BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019334
(342 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255543431|ref|XP_002512778.1| Ribulose bisphosphate carboxylase/oxygenase activase, chloroplast
precursor, putative [Ricinus communis]
gi|223547789|gb|EEF49281.1| Ribulose bisphosphate carboxylase/oxygenase activase, chloroplast
precursor, putative [Ricinus communis]
Length = 428
Score = 659 bits (1701), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 316/342 (92%), Positives = 331/342 (96%), Gaps = 1/342 (0%)
Query: 1 MNIAVGARAGVIDPLFAGNFLGKDSDIVFDYRQKVTRSFEYLQGDYYIAPVFMASLLCHI 60
MNIAVGAR GVIDPLFAGNFLG+DSDIVFDYRQKVTRSFEYL+GDYYIAPVF+ ++CHI
Sbjct: 88 MNIAVGARPGVIDPLFAGNFLGRDSDIVFDYRQKVTRSFEYLKGDYYIAPVFLV-MICHI 146
Query: 61 VKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGK 120
VKNYIAHLLNVKVPLILGIWGGKGQGKSFQTEL+FQAMGIEPVIMSAGELESERAGEPGK
Sbjct: 147 VKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELVFQAMGIEPVIMSAGELESERAGEPGK 206
Query: 121 LIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRV 180
LIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNL DNPTRV
Sbjct: 207 LIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLVDNPTRV 266
Query: 181 SIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKD 240
S GQDWRESDITNRIPII TGNDFSTIYAPLIRDGRMEKF+WQPN EDI+NIVHRMYEKD
Sbjct: 267 STGQDWRESDITNRIPIIVTGNDFSTIYAPLIRDGRMEKFFWQPNQEDIVNIVHRMYEKD 326
Query: 241 GITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKEL 300
GI++DEV SIVKTFPNQALDFYGALRSRTYD SISKWIDDIGGVENLGNKLLKRRK++ L
Sbjct: 327 GISRDEVVSIVKTFPNQALDFYGALRSRTYDMSISKWIDDIGGVENLGNKLLKRRKNETL 386
Query: 301 PVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYMKNIDD 342
PV+TPPE+TVEAL ESGYSL+REQQLIMETKLSKEYMKNIDD
Sbjct: 387 PVYTPPEQTVEALFESGYSLIREQQLIMETKLSKEYMKNIDD 428
>gi|224057192|ref|XP_002299165.1| predicted protein [Populus trichocarpa]
gi|222846423|gb|EEE83970.1| predicted protein [Populus trichocarpa]
Length = 428
Score = 649 bits (1675), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 304/342 (88%), Positives = 330/342 (96%)
Query: 1 MNIAVGARAGVIDPLFAGNFLGKDSDIVFDYRQKVTRSFEYLQGDYYIAPVFMASLLCHI 60
MNIAVGARAGV+D LFAGNFLGKDSDIVFDYRQKVTRSFEYLQGDYYIAP+F+ ++CHI
Sbjct: 87 MNIAVGARAGVVDSLFAGNFLGKDSDIVFDYRQKVTRSFEYLQGDYYIAPLFLDKVVCHI 146
Query: 61 VKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGK 120
VKNY+AH LNVKVPLILGIWGGKGQGKSFQTELIFQ +G+EPVIMSAGELESERAGEPG+
Sbjct: 147 VKNYLAHRLNVKVPLILGIWGGKGQGKSFQTELIFQTLGVEPVIMSAGELESERAGEPGR 206
Query: 121 LIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRV 180
LIRERYRTASQVVQNQGKMSCLMIND+DAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRV
Sbjct: 207 LIRERYRTASQVVQNQGKMSCLMINDLDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRV 266
Query: 181 SIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKD 240
SIGQDWRESDITNR+PII TGNDFSTIYAPLIRDGRMEKFYWQPN EDI+NIVHRMYEKD
Sbjct: 267 SIGQDWRESDITNRVPIIVTGNDFSTIYAPLIRDGRMEKFYWQPNREDIVNIVHRMYEKD 326
Query: 241 GITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKEL 300
GI++DEV SIV FPNQALDFYGALRSRTYDRSISKW+DDIGG+ENLG +LL+R+KD++L
Sbjct: 327 GISRDEVVSIVNKFPNQALDFYGALRSRTYDRSISKWVDDIGGIENLGKQLLRRKKDEKL 386
Query: 301 PVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYMKNIDD 342
P FTPPE+T+EALLESG+SL+REQQLIMETKLSKEYMKN+DD
Sbjct: 387 PEFTPPEQTMEALLESGHSLIREQQLIMETKLSKEYMKNVDD 428
>gi|356550687|ref|XP_003543716.1| PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic-like [Glycine max]
Length = 428
Score = 646 bits (1667), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 307/342 (89%), Positives = 326/342 (95%)
Query: 1 MNIAVGARAGVIDPLFAGNFLGKDSDIVFDYRQKVTRSFEYLQGDYYIAPVFMASLLCHI 60
MNIAVG RAGVID LFAGNFLGKDSDIVFDYRQKVTRSF+YLQGDYYIAP+FM ++CHI
Sbjct: 87 MNIAVGQRAGVIDSLFAGNFLGKDSDIVFDYRQKVTRSFQYLQGDYYIAPLFMDKVVCHI 146
Query: 61 VKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGK 120
VKNY+A +LN KVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGK
Sbjct: 147 VKNYLARVLNTKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGK 206
Query: 121 LIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRV 180
LIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRV
Sbjct: 207 LIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRV 266
Query: 181 SIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKD 240
S+GQDWRESD+TNRIPII TGNDFST+YAPLIRDGRM+KFYWQPN EDILNIVHRMYEKD
Sbjct: 267 SVGQDWRESDVTNRIPIIVTGNDFSTLYAPLIRDGRMDKFYWQPNQEDILNIVHRMYEKD 326
Query: 241 GITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKEL 300
I++DEV +V TFPNQALDFYGALRSRTYDRSI KWIDDIGGVEN GNKLLKRRKD+ L
Sbjct: 327 SISRDEVERVVNTFPNQALDFYGALRSRTYDRSILKWIDDIGGVENFGNKLLKRRKDQSL 386
Query: 301 PVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYMKNIDD 342
PVF PPE+TV+ALLESGYSL++EQ+LIMETKLSKEYMKNIDD
Sbjct: 387 PVFIPPEQTVDALLESGYSLIKEQRLIMETKLSKEYMKNIDD 428
>gi|225443213|ref|XP_002270825.1| PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic-like [Vitis vinifera]
Length = 442
Score = 643 bits (1659), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 304/342 (88%), Positives = 326/342 (95%)
Query: 1 MNIAVGARAGVIDPLFAGNFLGKDSDIVFDYRQKVTRSFEYLQGDYYIAPVFMASLLCHI 60
MNIAVGARAG+ID LF GNFLG+DSDIVFDYRQKVTRSFEYLQGDYYIAPVFM ++CHI
Sbjct: 101 MNIAVGARAGIIDDLFVGNFLGRDSDIVFDYRQKVTRSFEYLQGDYYIAPVFMDKVVCHI 160
Query: 61 VKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGK 120
VKNYIAHLLN VPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGK
Sbjct: 161 VKNYIAHLLNTNVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGK 220
Query: 121 LIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRV 180
LIRERYRTASQVVQNQGKMSCLMINDIDAG+GRFGNTQ+TVNNQI VGTLMNLSDNPTRV
Sbjct: 221 LIRERYRTASQVVQNQGKMSCLMINDIDAGIGRFGNTQVTVNNQIAVGTLMNLSDNPTRV 280
Query: 181 SIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKD 240
SIGQDWRE+DITNR+PII TGNDFSTIYAPLIRDGRM+KFYWQP EDI+NIV RMYEKD
Sbjct: 281 SIGQDWRETDITNRVPIIVTGNDFSTIYAPLIRDGRMDKFYWQPTHEDIINIVDRMYEKD 340
Query: 241 GITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKEL 300
GI++D V IV TFPNQALDFYGALRSRTYDRSISKW+DDIGGVENLGNKLL+RRKD++L
Sbjct: 341 GISRDAVVRIVDTFPNQALDFYGALRSRTYDRSISKWVDDIGGVENLGNKLLRRRKDEKL 400
Query: 301 PVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYMKNIDD 342
PVF PP++T++ALLESGYSL++EQQLIMETKLSKEYMKNIDD
Sbjct: 401 PVFVPPKQTIDALLESGYSLIKEQQLIMETKLSKEYMKNIDD 442
>gi|298204740|emb|CBI25238.3| unnamed protein product [Vitis vinifera]
Length = 440
Score = 640 bits (1652), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 305/342 (89%), Positives = 326/342 (95%), Gaps = 2/342 (0%)
Query: 1 MNIAVGARAGVIDPLFAGNFLGKDSDIVFDYRQKVTRSFEYLQGDYYIAPVFMASLLCHI 60
MNIAVGARAG+ID LF GNFLG+DSDIVFDYRQKVTRSFEYLQGDYYIAPVFMA +CHI
Sbjct: 101 MNIAVGARAGIIDDLFVGNFLGRDSDIVFDYRQKVTRSFEYLQGDYYIAPVFMA--MCHI 158
Query: 61 VKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGK 120
VKNYIAHLLN VPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGK
Sbjct: 159 VKNYIAHLLNTNVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGK 218
Query: 121 LIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRV 180
LIRERYRTASQVVQNQGKMSCLMINDIDAG+GRFGNTQ+TVNNQI VGTLMNLSDNPTRV
Sbjct: 219 LIRERYRTASQVVQNQGKMSCLMINDIDAGIGRFGNTQVTVNNQIAVGTLMNLSDNPTRV 278
Query: 181 SIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKD 240
SIGQDWRE+DITNR+PII TGNDFSTIYAPLIRDGRM+KFYWQP EDI+NIV RMYEKD
Sbjct: 279 SIGQDWRETDITNRVPIIVTGNDFSTIYAPLIRDGRMDKFYWQPTHEDIINIVDRMYEKD 338
Query: 241 GITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKEL 300
GI++D V IV TFPNQALDFYGALRSRTYDRSISKW+DDIGGVENLGNKLL+RRKD++L
Sbjct: 339 GISRDAVVRIVDTFPNQALDFYGALRSRTYDRSISKWVDDIGGVENLGNKLLRRRKDEKL 398
Query: 301 PVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYMKNIDD 342
PVF PP++T++ALLESGYSL++EQQLIMETKLSKEYMKNIDD
Sbjct: 399 PVFVPPKQTIDALLESGYSLIKEQQLIMETKLSKEYMKNIDD 440
>gi|388517903|gb|AFK47013.1| unknown [Lotus japonicus]
Length = 421
Score = 634 bits (1635), Expect = e-179, Method: Compositional matrix adjust.
Identities = 298/342 (87%), Positives = 323/342 (94%)
Query: 1 MNIAVGARAGVIDPLFAGNFLGKDSDIVFDYRQKVTRSFEYLQGDYYIAPVFMASLLCHI 60
MNIAVG RAGVID LFAGNFLGKDSDIVFDYRQK TRSF+YLQG YYIAP+FM ++CHI
Sbjct: 80 MNIAVGQRAGVIDDLFAGNFLGKDSDIVFDYRQKATRSFQYLQGYYYIAPLFMDKVVCHI 139
Query: 61 VKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGK 120
KNY+AHLLNVKVPLILGIWGGKGQGK+FQTELIF AMG+EPVIMSAGELESERAGEPG+
Sbjct: 140 AKNYLAHLLNVKVPLILGIWGGKGQGKTFQTELIFHAMGMEPVIMSAGELESERAGEPGR 199
Query: 121 LIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRV 180
LIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRV
Sbjct: 200 LIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRV 259
Query: 181 SIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKD 240
S+GQDWRESDITNRIPII TGNDFSTIYAPLIRDGRM+KFYWQPN EDI NIVHRMYEKD
Sbjct: 260 SVGQDWRESDITNRIPIIVTGNDFSTIYAPLIRDGRMDKFYWQPNREDIQNIVHRMYEKD 319
Query: 241 GITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKEL 300
GI++DEV IV TFPNQALDFYGALRSRTYD+SI KW+DDIGGVEN G K+LKRRKD+ L
Sbjct: 320 GISRDEVERIVDTFPNQALDFYGALRSRTYDKSILKWVDDIGGVENFGTKILKRRKDQNL 379
Query: 301 PVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYMKNIDD 342
PVF PPE+TV+ALLESGYSL++EQ+L+ME+KLSKEYMKN++D
Sbjct: 380 PVFIPPEQTVDALLESGYSLIKEQELVMESKLSKEYMKNMED 421
>gi|449436220|ref|XP_004135891.1| PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic-like [Cucumis sativus]
Length = 426
Score = 625 bits (1611), Expect = e-176, Method: Compositional matrix adjust.
Identities = 291/342 (85%), Positives = 323/342 (94%)
Query: 1 MNIAVGARAGVIDPLFAGNFLGKDSDIVFDYRQKVTRSFEYLQGDYYIAPVFMASLLCHI 60
MNIAVGARAGVID +FAGNFLGKDSDIVFDYRQKVTR+FE++QGDYYIAP FM ++CH+
Sbjct: 85 MNIAVGARAGVIDDVFAGNFLGKDSDIVFDYRQKVTRTFEHIQGDYYIAPTFMDKVVCHL 144
Query: 61 VKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGK 120
VKN+I HLL+VKVPLILG+WGGKGQGKSFQTELIFQAMG+EPVIMSAGELESERAGEPGK
Sbjct: 145 VKNFIVHLLDVKVPLILGVWGGKGQGKSFQTELIFQAMGVEPVIMSAGELESERAGEPGK 204
Query: 121 LIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRV 180
LIRERYRTASQVVQNQGKMSCLMINDIDAG+GRFG TQ+TVNNQIV GTLMNL+DNPTRV
Sbjct: 205 LIRERYRTASQVVQNQGKMSCLMINDIDAGIGRFGQTQVTVNNQIVSGTLMNLADNPTRV 264
Query: 181 SIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKD 240
SIGQDWRE+DI +RIPII TGNDFSTIYAPLIRDGRMEKFYWQPN EDI+NIVHRMYEKD
Sbjct: 265 SIGQDWREADILHRIPIILTGNDFSTIYAPLIRDGRMEKFYWQPNREDIVNIVHRMYEKD 324
Query: 241 GITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKEL 300
GI++ +V IV TFPNQALDFYGALRSRTYD +ISKW+DDIGGVE LG KLL+RRK ++L
Sbjct: 325 GISRAQVVDIVNTFPNQALDFYGALRSRTYDSAISKWVDDIGGVEKLGEKLLRRRKSEKL 384
Query: 301 PVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYMKNIDD 342
P FTPPE+T+EALL++GYSL++EQQLIMETKLSKEYMKN+DD
Sbjct: 385 PTFTPPEQTLEALLKAGYSLVKEQQLIMETKLSKEYMKNMDD 426
>gi|388512327|gb|AFK44225.1| unknown [Medicago truncatula]
Length = 418
Score = 622 bits (1604), Expect = e-176, Method: Compositional matrix adjust.
Identities = 291/342 (85%), Positives = 320/342 (93%)
Query: 1 MNIAVGARAGVIDPLFAGNFLGKDSDIVFDYRQKVTRSFEYLQGDYYIAPVFMASLLCHI 60
MNIAVG RAG+ID +FAGNFLG+DSDIVFDYRQKVTRSF+YLQGDYYIAP+FM ++ HI
Sbjct: 77 MNIAVGQRAGIIDDVFAGNFLGRDSDIVFDYRQKVTRSFQYLQGDYYIAPLFMDKVVTHI 136
Query: 61 VKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGK 120
KNY++HLLN KVPLILGIWGGKGQGK+FQTELIF+AMG+EPVIMSAGELESE AGEPG+
Sbjct: 137 TKNYLSHLLNAKVPLILGIWGGKGQGKTFQTELIFRAMGVEPVIMSAGELESENAGEPGR 196
Query: 121 LIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRV 180
LIRERYRTAS+VVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNL DNPTRV
Sbjct: 197 LIRERYRTASKVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLCDNPTRV 256
Query: 181 SIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKD 240
SIGQDWRE+D+TNRIPII TGND STIYAPLIRDGRM+KFYWQPN EDILNIV RMYEKD
Sbjct: 257 SIGQDWREADVTNRIPIIVTGNDLSTIYAPLIRDGRMDKFYWQPNQEDILNIVQRMYEKD 316
Query: 241 GITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKEL 300
GI++DEV +VKTFPNQALDFYGALRSRTYDRSI KW+DDIGG E+ +K LKRRKD+ L
Sbjct: 317 GISRDEVEKVVKTFPNQALDFYGALRSRTYDRSILKWVDDIGGAESFTSKFLKRRKDQNL 376
Query: 301 PVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYMKNIDD 342
PVF PPE+T++ALLESGYSLL+EQQLIMETKLSKEYMKNI+D
Sbjct: 377 PVFIPPEQTIDALLESGYSLLKEQQLIMETKLSKEYMKNIED 418
>gi|449491096|ref|XP_004158798.1| PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic-like [Cucumis sativus]
Length = 427
Score = 614 bits (1584), Expect = e-173, Method: Compositional matrix adjust.
Identities = 288/343 (83%), Positives = 320/343 (93%), Gaps = 1/343 (0%)
Query: 1 MNIAVGARAGVIDPLFAGNFLGKDSDIVFDYRQKVTRSFEYLQGDYYIAPVFMASLLCHI 60
MNIAVGARAGVID +FAGNFLGKDSDIVFDYRQKVTR+FE++QGDYYIAP FM ++CH+
Sbjct: 85 MNIAVGARAGVIDDVFAGNFLGKDSDIVFDYRQKVTRTFEHIQGDYYIAPTFMDKVVCHL 144
Query: 61 VKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGK 120
VKN+I HLL+VKVPLILG+WGGKGQGKSFQTELIFQAMG+EPVIMSAGELESERAGEPGK
Sbjct: 145 VKNFIVHLLDVKVPLILGVWGGKGQGKSFQTELIFQAMGVEPVIMSAGELESERAGEPGK 204
Query: 121 LIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRV 180
LIRERYRTASQVVQNQGKMSCLMINDIDAG+GRFG TQ+TVNNQIV GTLMNL+DNPTRV
Sbjct: 205 LIRERYRTASQVVQNQGKMSCLMINDIDAGIGRFGQTQVTVNNQIVSGTLMNLADNPTRV 264
Query: 181 SIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKD 240
SIGQDWRE+DI +RIPII TGNDFSTIYAPLIRDGRMEKFYWQPN EDI+NIVHRMYEKD
Sbjct: 265 SIGQDWREADILHRIPIILTGNDFSTIYAPLIRDGRMEKFYWQPNREDIVNIVHRMYEKD 324
Query: 241 GITKDEVGSIVKTFPNQA-LDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKE 299
GI++ +V IV TFPNQ FYGALRSRTYD +ISKW+DDIGGVE LG KLL+RRK ++
Sbjct: 325 GISRAQVVDIVNTFPNQGNFGFYGALRSRTYDSAISKWVDDIGGVEKLGEKLLRRRKSEK 384
Query: 300 LPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYMKNIDD 342
LP FTPPE+T+EALL++GYSL++EQQLIMETKLSKEYMKN+DD
Sbjct: 385 LPTFTPPEQTLEALLKAGYSLVKEQQLIMETKLSKEYMKNMDD 427
>gi|358346465|ref|XP_003637288.1| Ribulose bisphosphate carboxylase/oxygenase activase [Medicago
truncatula]
gi|355503223|gb|AES84426.1| Ribulose bisphosphate carboxylase/oxygenase activase [Medicago
truncatula]
Length = 459
Score = 604 bits (1557), Expect = e-170, Method: Compositional matrix adjust.
Identities = 291/383 (75%), Positives = 320/383 (83%), Gaps = 41/383 (10%)
Query: 1 MNIAVGARAGVIDPLFAGNFLGKDSDIVFDYRQKVTRSFEYLQGDYYIAPVFMASLLCHI 60
MNIAVG RAG+ID +FAGNFLG+DSDIVFDYRQKVTRSF+YLQGDYYIAP+FM ++ HI
Sbjct: 77 MNIAVGQRAGIIDDVFAGNFLGRDSDIVFDYRQKVTRSFQYLQGDYYIAPLFMDKVVTHI 136
Query: 61 VKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGK 120
KNY++HLLN KVPLILGIWGGKGQGK+FQTELIF+AMG+EPVIMSAGELESE AGEPG+
Sbjct: 137 TKNYLSHLLNAKVPLILGIWGGKGQGKTFQTELIFRAMGVEPVIMSAGELESENAGEPGR 196
Query: 121 LIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRV 180
LIRERYRTAS+VVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNL DNPTRV
Sbjct: 197 LIRERYRTASKVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLCDNPTRV 256
Query: 181 SIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKD 240
SIGQDWRE+D+TNRIPII TGND STIYAPLIRDGRM+KFYWQPN EDILNIV RMYEKD
Sbjct: 257 SIGQDWREADVTNRIPIIVTGNDLSTIYAPLIRDGRMDKFYWQPNQEDILNIVQRMYEKD 316
Query: 241 GITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISK------------------------ 276
GI++DEV +VKTFPNQALDFYGALRSRTYDRSI K
Sbjct: 317 GISRDEVEKVVKTFPNQALDFYGALRSRTYDRSILKGVELEEKPLSKESPVSYLLCTSNA 376
Query: 277 -----------------WIDDIGGVENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYS 319
W+DDIGG E+ +K LKRRKD+ LPVF PPE+T++ALLESGYS
Sbjct: 377 VGITHTDRLIPQHLPTPWVDDIGGAESFASKFLKRRKDQNLPVFIPPEQTIDALLESGYS 436
Query: 320 LLREQQLIMETKLSKEYMKNIDD 342
LL+EQQLIMETKLSKEYMKNI+D
Sbjct: 437 LLKEQQLIMETKLSKEYMKNIED 459
>gi|71834884|gb|AAZ41846.1| Rubisco activase 2 [Mesembryanthemum crystallinum]
Length = 456
Score = 600 bits (1546), Expect = e-169, Method: Compositional matrix adjust.
Identities = 278/341 (81%), Positives = 314/341 (92%)
Query: 2 NIAVGARAGVIDPLFAGNFLGKDSDIVFDYRQKVTRSFEYLQGDYYIAPVFMASLLCHIV 61
NI VGAR GVID LF GNFLG+DSDIVFDYRQKVTRSFEYL+GDYYIAPVF+ ++CHIV
Sbjct: 116 NITVGARPGVIDDLFTGNFLGRDSDIVFDYRQKVTRSFEYLRGDYYIAPVFLDQVVCHIV 175
Query: 62 KNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKL 121
KN++AHLLNVKVPLILGIWGGKGQGK+FQTELIF+AMG+EPVIMSAGE+ESE+AGEPG+L
Sbjct: 176 KNFMAHLLNVKVPLILGIWGGKGQGKTFQTELIFRAMGVEPVIMSAGEMESEKAGEPGRL 235
Query: 122 IRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVS 181
IRERYR ASQVVQN GK+SCLMIND+DAG+GRFGNTQ+TVNNQ GTLMNL+DNPTRVS
Sbjct: 236 IRERYRAASQVVQNHGKLSCLMINDLDAGIGRFGNTQVTVNNQTAAGTLMNLADNPTRVS 295
Query: 182 IGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDG 241
IGQ WRE+D T+RIP+I TGNDFSTIYAPLIRDGRM+KFYWQP +DI+NIVHRMYEKDG
Sbjct: 296 IGQKWRENDTTHRIPVIVTGNDFSTIYAPLIRDGRMDKFYWQPTHDDIVNIVHRMYEKDG 355
Query: 242 ITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELP 301
I+ DEV SIV TFPNQALDFYGA+RSRTYDRS+ KW+DDIGG++NLG KLL+ RK ELP
Sbjct: 356 ISWDEVVSIVNTFPNQALDFYGAMRSRTYDRSVLKWVDDIGGIDNLGAKLLQLRKGDELP 415
Query: 302 VFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYMKNIDD 342
VF PPE+ VEALLESGYSLLREQQLI +TKL+KEYMKN++D
Sbjct: 416 VFVPPEQNVEALLESGYSLLREQQLINKTKLAKEYMKNMED 456
>gi|116310848|emb|CAH67790.1| OSIGBa0132E09-OSIGBa0108L24.4 [Oryza sativa Indica Group]
Length = 441
Score = 588 bits (1517), Expect = e-166, Method: Compositional matrix adjust.
Identities = 268/342 (78%), Positives = 315/342 (92%)
Query: 1 MNIAVGARAGVIDPLFAGNFLGKDSDIVFDYRQKVTRSFEYLQGDYYIAPVFMASLLCHI 60
MNIAVGAR+G++D LF GNFLGKDSDIVFDYRQK TR+FEYLQGDYYIAP+F+ + CHI
Sbjct: 100 MNIAVGARSGIVDDLFVGNFLGKDSDIVFDYRQKATRTFEYLQGDYYIAPLFLDKVACHI 159
Query: 61 VKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGK 120
VKNY+AH+L +K+PLILGIWGGKGQGK+FQTELIF+AMG+EPVIMSAGELESE+AGEPG+
Sbjct: 160 VKNYLAHILTIKIPLILGIWGGKGQGKTFQTELIFRAMGVEPVIMSAGELESEKAGEPGR 219
Query: 121 LIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRV 180
LIR+RYRTASQV+QNQGKMS LMIND+DAG+GRFGNTQMTVNNQIV+GTLMNL+DNPTRV
Sbjct: 220 LIRDRYRTASQVIQNQGKMSVLMINDLDAGVGRFGNTQMTVNNQIVIGTLMNLADNPTRV 279
Query: 181 SIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKD 240
SIGQ WRESD+T+R+PII TGNDFST+YAPLIRDGRMEKFYWQP+ EDI+NIVHRMY KD
Sbjct: 280 SIGQKWRESDVTHRVPIIVTGNDFSTLYAPLIRDGRMEKFYWQPDREDIINIVHRMYIKD 339
Query: 241 GITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKEL 300
G++ ++V IV TFPNQALDFYGALRSRTYDR+I +W+++IGG E L KLLKR+K +EL
Sbjct: 340 GLSFEDVSKIVDTFPNQALDFYGALRSRTYDRAILQWVEEIGGHEQLNEKLLKRKKGEEL 399
Query: 301 PVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYMKNIDD 342
P F PP+ TV+AL+ESG SL++EQ+LIM +KLSKEYMKN+DD
Sbjct: 400 PTFIPPKTTVDALIESGDSLVKEQELIMNSKLSKEYMKNLDD 441
>gi|115461056|ref|NP_001054128.1| Os04g0658300 [Oryza sativa Japonica Group]
gi|38346401|emb|CAE04234.2| OSJNBa0011F23.7 [Oryza sativa Japonica Group]
gi|113565699|dbj|BAF16042.1| Os04g0658300 [Oryza sativa Japonica Group]
Length = 441
Score = 587 bits (1514), Expect = e-165, Method: Compositional matrix adjust.
Identities = 267/342 (78%), Positives = 314/342 (91%)
Query: 1 MNIAVGARAGVIDPLFAGNFLGKDSDIVFDYRQKVTRSFEYLQGDYYIAPVFMASLLCHI 60
MNIAVGAR+G++D LF GNFLGKDSDIVFDYRQK TR+FEYLQGDYYIAP+F+ + CHI
Sbjct: 100 MNIAVGARSGIVDDLFVGNFLGKDSDIVFDYRQKATRTFEYLQGDYYIAPLFLDKVACHI 159
Query: 61 VKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGK 120
VKNY+AH+L +K+PLILGIWGGKGQGK+FQTELIF+AMG+EPVIMSAGELESE+AGEPG+
Sbjct: 160 VKNYLAHILTIKIPLILGIWGGKGQGKTFQTELIFRAMGVEPVIMSAGELESEKAGEPGR 219
Query: 121 LIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRV 180
LIR+RYRTASQV+QNQGKMS LMIND+DAG+GRFGNTQMTVNNQIV+GTLMNL+DNPTRV
Sbjct: 220 LIRDRYRTASQVIQNQGKMSVLMINDLDAGVGRFGNTQMTVNNQIVIGTLMNLADNPTRV 279
Query: 181 SIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKD 240
SIGQ WRESD+T+R+PII TGNDFST+YAPLIRDGRMEKFYWQP EDI+NIVHRMY KD
Sbjct: 280 SIGQKWRESDVTHRVPIIVTGNDFSTLYAPLIRDGRMEKFYWQPGREDIINIVHRMYIKD 339
Query: 241 GITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKEL 300
G++ ++V +V TFPNQALDFYGALRSRTYDR+I +W+++IGG E L KLLKR+K +EL
Sbjct: 340 GLSFEDVSKVVDTFPNQALDFYGALRSRTYDRAILQWVEEIGGHEQLNEKLLKRKKGEEL 399
Query: 301 PVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYMKNIDD 342
P F PP+ TV+AL+ESG SL++EQ+LIM +KLSKEYMKN+DD
Sbjct: 400 PTFIPPKTTVDALIESGDSLVKEQELIMNSKLSKEYMKNLDD 441
>gi|218195741|gb|EEC78168.1| hypothetical protein OsI_17750 [Oryza sativa Indica Group]
Length = 456
Score = 579 bits (1492), Expect = e-163, Method: Compositional matrix adjust.
Identities = 268/357 (75%), Positives = 315/357 (88%), Gaps = 15/357 (4%)
Query: 1 MNIAVGARAGVIDPLFAGNFLGKDSDIVFDYRQKVTRSFEYLQGDYYIAPVFMASLLCHI 60
MNIAVGAR+G++D LF GNFLGKDSDIVFDYRQK TR+FEYLQGDYYIAP+F+ + CHI
Sbjct: 100 MNIAVGARSGIVDDLFVGNFLGKDSDIVFDYRQKATRTFEYLQGDYYIAPLFLDKVACHI 159
Query: 61 VKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGK 120
VKNY+AH+L +K+PLILGIWGGKGQGK+FQTELIF+AMG+EPVIMSAGELESE+AGEPG+
Sbjct: 160 VKNYLAHILTIKIPLILGIWGGKGQGKTFQTELIFRAMGVEPVIMSAGELESEKAGEPGR 219
Query: 121 LIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRV 180
LIR+RYRTASQV+QNQGKMS LMIND+DAG+GRFGNTQMTVNNQIV+GTLMNL+DNPTRV
Sbjct: 220 LIRDRYRTASQVIQNQGKMSVLMINDLDAGVGRFGNTQMTVNNQIVIGTLMNLADNPTRV 279
Query: 181 SIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKD 240
SIGQ WRESD+T+R+PII TGNDFST+YAPLIRDGRMEKFYWQP+ EDI+NIVHRMY KD
Sbjct: 280 SIGQKWRESDVTHRVPIIVTGNDFSTLYAPLIRDGRMEKFYWQPDREDIINIVHRMYIKD 339
Query: 241 GITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISK---------------WIDDIGGVE 285
G++ ++V IV TFPNQALDFYGALRSRTYDR+I + W+++IGG E
Sbjct: 340 GLSFEDVSKIVDTFPNQALDFYGALRSRTYDRAILQLLKMYFFANTVEDVLWVEEIGGHE 399
Query: 286 NLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYMKNIDD 342
L KLLKR+K +ELP F PP+ TV+AL+ESG SL++EQ+LIM +KLSKEYMKN+DD
Sbjct: 400 QLNEKLLKRKKGEELPTFIPPKTTVDALIESGDSLVKEQELIMNSKLSKEYMKNLDD 456
>gi|297842049|ref|XP_002888906.1| hypothetical protein ARALYDRAFT_476441 [Arabidopsis lyrata subsp.
lyrata]
gi|297334747|gb|EFH65165.1| hypothetical protein ARALYDRAFT_476441 [Arabidopsis lyrata subsp.
lyrata]
Length = 419
Score = 578 bits (1491), Expect = e-162, Method: Compositional matrix adjust.
Identities = 270/342 (78%), Positives = 311/342 (90%)
Query: 1 MNIAVGARAGVIDPLFAGNFLGKDSDIVFDYRQKVTRSFEYLQGDYYIAPVFMASLLCHI 60
+NI+VGAR+G+ID +F G+FLGKDSDIVFDYRQK TRSFE+LQGDYYIAP F+ + HI
Sbjct: 78 VNISVGARSGMIDDVFIGDFLGKDSDIVFDYRQKATRSFEHLQGDYYIAPSFLDKVAVHI 137
Query: 61 VKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGK 120
VKNY+A LN+K+PLILGIWGGKGQGK+FQTELIF+ MG+EPVIMSAGELES+RAGEPG+
Sbjct: 138 VKNYLAPSLNIKIPLILGIWGGKGQGKTFQTELIFKTMGVEPVIMSAGELESDRAGEPGR 197
Query: 121 LIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRV 180
LIR+RYRTASQV+QNQGKMS LMINDIDAGLGRFG TQMTVNNQIVVGTLMNL+DNPTRV
Sbjct: 198 LIRDRYRTASQVIQNQGKMSVLMINDIDAGLGRFGETQMTVNNQIVVGTLMNLADNPTRV 257
Query: 181 SIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKD 240
S+GQ+WRE+DI NR+P+I TGNDFST+YAPLIR+GRMEKFYWQP EDI+NIV RMYEKD
Sbjct: 258 SVGQEWREADIVNRVPLIVTGNDFSTLYAPLIREGRMEKFYWQPTREDIVNIVSRMYEKD 317
Query: 241 GITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKEL 300
GI++ +V SIV FPNQALDFYGALRSRTYDRSI KW+D+ GG+E LG LL+ +K KE+
Sbjct: 318 GISRKDVISIVDKFPNQALDFYGALRSRTYDRSILKWVDEAGGMETLGKILLRSKKTKEV 377
Query: 301 PVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYMKNIDD 342
P FTPPE+TVEALLESGYSL+ EQ+LIMETKLSKEYMKN+DD
Sbjct: 378 PQFTPPEQTVEALLESGYSLINEQKLIMETKLSKEYMKNMDD 419
>gi|15219376|ref|NP_177454.1| putative Rubisco activase 2 [Arabidopsis thaliana]
gi|13605706|gb|AAK32846.1|AF361834_1 At1g73110/F3N23_39 [Arabidopsis thaliana]
gi|18700270|gb|AAL77745.1| At1g73110/F3N23_39 [Arabidopsis thaliana]
gi|26452888|dbj|BAC43522.1| unknown protein [Arabidopsis thaliana]
gi|332197294|gb|AEE35415.1| putative Rubisco activase 2 [Arabidopsis thaliana]
Length = 432
Score = 578 bits (1490), Expect = e-162, Method: Compositional matrix adjust.
Identities = 269/342 (78%), Positives = 311/342 (90%)
Query: 1 MNIAVGARAGVIDPLFAGNFLGKDSDIVFDYRQKVTRSFEYLQGDYYIAPVFMASLLCHI 60
+NIAVGAR+G+ID +F G+FLGKDSDIVFDYRQK TRSFE+LQGDYYIAP F+ + HI
Sbjct: 91 VNIAVGARSGMIDDVFIGDFLGKDSDIVFDYRQKATRSFEHLQGDYYIAPSFLDKVAVHI 150
Query: 61 VKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGK 120
VKNY+A LN+K+PLILGIWGGKGQGK+FQTELIF+ MG+EPVIMSAGELES+RAGEPG+
Sbjct: 151 VKNYLAPSLNIKIPLILGIWGGKGQGKTFQTELIFKTMGVEPVIMSAGELESDRAGEPGR 210
Query: 121 LIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRV 180
LIR+RYRTASQV+QNQGKMS LMINDIDAGLGRFG TQMTVNNQIVVGTLMNL+DNPTRV
Sbjct: 211 LIRDRYRTASQVIQNQGKMSVLMINDIDAGLGRFGETQMTVNNQIVVGTLMNLADNPTRV 270
Query: 181 SIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKD 240
S+GQ+WRE+D+ NR+P+I TGNDFST+YAPLIR+GRMEKFYWQP EDI+NIV RMYEKD
Sbjct: 271 SVGQEWREADMVNRVPLIVTGNDFSTLYAPLIREGRMEKFYWQPTREDIVNIVSRMYEKD 330
Query: 241 GITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKEL 300
GI++ +V SIV FPNQALDFYGALRSRTYDRSI KW+D+ GG+E LG LL+R+K +E+
Sbjct: 331 GISRKDVISIVDKFPNQALDFYGALRSRTYDRSILKWVDEAGGMETLGKVLLRRKKTQEV 390
Query: 301 PVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYMKNIDD 342
P FT PE+TVEALLESGYSL+ EQ+LIMETKLSKEYMKN+DD
Sbjct: 391 PQFTAPEQTVEALLESGYSLINEQKLIMETKLSKEYMKNMDD 432
>gi|222629697|gb|EEE61829.1| hypothetical protein OsJ_16474 [Oryza sativa Japonica Group]
Length = 456
Score = 577 bits (1488), Expect = e-162, Method: Compositional matrix adjust.
Identities = 267/357 (74%), Positives = 314/357 (87%), Gaps = 15/357 (4%)
Query: 1 MNIAVGARAGVIDPLFAGNFLGKDSDIVFDYRQKVTRSFEYLQGDYYIAPVFMASLLCHI 60
MNIAVGAR+G++D LF GNFLGKDSDIVFDYRQK TR+FEYLQGDYYIAP+F+ + CHI
Sbjct: 100 MNIAVGARSGIVDDLFVGNFLGKDSDIVFDYRQKATRTFEYLQGDYYIAPLFLDKVACHI 159
Query: 61 VKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGK 120
VKNY+AH+L +K+PLILGIWGGKGQGK+FQTELIF+AMG+EPVIMSAGELESE+AGEPG+
Sbjct: 160 VKNYLAHILTIKIPLILGIWGGKGQGKTFQTELIFRAMGVEPVIMSAGELESEKAGEPGR 219
Query: 121 LIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRV 180
LIR+RYRTASQV+QNQGKMS LMIND+DAG+GRFGNTQMTVNNQIV+GTLMNL+DNPTRV
Sbjct: 220 LIRDRYRTASQVIQNQGKMSVLMINDLDAGVGRFGNTQMTVNNQIVIGTLMNLADNPTRV 279
Query: 181 SIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKD 240
SIGQ WRESD+T+R+PII TGNDFST+YAPLIRDGRMEKFYWQP EDI+NIVHRMY KD
Sbjct: 280 SIGQKWRESDVTHRVPIIVTGNDFSTLYAPLIRDGRMEKFYWQPGREDIINIVHRMYIKD 339
Query: 241 GITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISK---------------WIDDIGGVE 285
G++ ++V +V TFPNQALDFYGALRSRTYDR+I + W+++IGG E
Sbjct: 340 GLSFEDVSKVVDTFPNQALDFYGALRSRTYDRAILQLLKMYFFANTVEDVLWVEEIGGHE 399
Query: 286 NLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYMKNIDD 342
L KLLKR+K +ELP F PP+ TV+AL+ESG SL++EQ+LIM +KLSKEYMKN+DD
Sbjct: 400 QLNEKLLKRKKGEELPTFIPPKTTVDALIESGDSLVKEQELIMNSKLSKEYMKNLDD 456
>gi|242077492|ref|XP_002448682.1| hypothetical protein SORBIDRAFT_06g031390 [Sorghum bicolor]
gi|241939865|gb|EES13010.1| hypothetical protein SORBIDRAFT_06g031390 [Sorghum bicolor]
Length = 433
Score = 575 bits (1482), Expect = e-161, Method: Compositional matrix adjust.
Identities = 261/342 (76%), Positives = 309/342 (90%), Gaps = 1/342 (0%)
Query: 1 MNIAVGARAGVIDPLFAGNFLGKDSDIVFDYRQKVTRSFEYLQGDYYIAPVFMASLLCHI 60
+N+ VGARAG++D LF GNFLGKDSDIVFDYRQK TR+FEYLQGDYYIAP F+ + CHI
Sbjct: 92 LNVTVGARAGIVDDLFVGNFLGKDSDIVFDYRQKATRTFEYLQGDYYIAPAFLDKVACHI 151
Query: 61 VKNYIAHLLN-VKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPG 119
VKNYI HLLN +K+PLILG+WGGKGQGK+FQTELIF+AMG+EPVIMSAGELESE+AGEPG
Sbjct: 152 VKNYIGHLLNNIKIPLILGVWGGKGQGKTFQTELIFKAMGVEPVIMSAGELESEKAGEPG 211
Query: 120 KLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTR 179
+LIR+RYRTASQV+QNQGK+SCLMIND+DAG+GRFGNTQMTVNNQI VGTLMNL+DNP R
Sbjct: 212 RLIRDRYRTASQVIQNQGKLSCLMINDLDAGVGRFGNTQMTVNNQIAVGTLMNLADNPNR 271
Query: 180 VSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEK 239
VSIGQ WRESD+T+R+PII TGNDFST+YAPLIRDGRMEKFYWQP EDI++IVH MY K
Sbjct: 272 VSIGQKWRESDVTHRVPIIVTGNDFSTLYAPLIRDGRMEKFYWQPTREDIISIVHGMYRK 331
Query: 240 DGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKE 299
DG++ +EV +V TFPNQALDFYGALRSRTYDR+I +W+++IGG E L KLLKR+K +E
Sbjct: 332 DGLSAEEVARVVDTFPNQALDFYGALRSRTYDRAILEWVEEIGGHEQLRAKLLKRKKGEE 391
Query: 300 LPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYMKNID 341
LP F P+ ++EAL+ESGYSL++EQ+LIM +KLSKEYMKN++
Sbjct: 392 LPTFIAPKPSLEALIESGYSLVKEQELIMNSKLSKEYMKNLE 433
>gi|357166474|ref|XP_003580722.1| PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic-like [Brachypodium distachyon]
Length = 437
Score = 560 bits (1444), Expect = e-157, Method: Compositional matrix adjust.
Identities = 269/341 (78%), Positives = 314/341 (92%)
Query: 1 MNIAVGARAGVIDPLFAGNFLGKDSDIVFDYRQKVTRSFEYLQGDYYIAPVFMASLLCHI 60
MNIAVGAR+G+ID LF G FLG+DSDIVFDYRQKVTR FEYLQGDYYIAP F+ + CHI
Sbjct: 96 MNIAVGARSGIIDDLFVGKFLGRDSDIVFDYRQKVTRKFEYLQGDYYIAPSFLDKVACHI 155
Query: 61 VKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGK 120
VKNY+A+ LN+KVPLILG+WGGKGQGK+FQTELIF+AMG+EPVIMSAGELESERAGEPG+
Sbjct: 156 VKNYLANNLNIKVPLILGVWGGKGQGKTFQTELIFKAMGVEPVIMSAGELESERAGEPGR 215
Query: 121 LIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRV 180
LIR+RYRTASQV+QNQGKMSCLMIND+DAG+GRFGNTQMTVNNQIVVGTLMNL+DNPTRV
Sbjct: 216 LIRDRYRTASQVIQNQGKMSCLMINDLDAGVGRFGNTQMTVNNQIVVGTLMNLADNPTRV 275
Query: 181 SIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKD 240
SIGQ WRESDIT+R+PII TGNDFST+YAPLIRDGRMEKFYWQP+ EDI+NIVHRMY KD
Sbjct: 276 SIGQKWRESDITHRVPIIATGNDFSTLYAPLIRDGRMEKFYWQPDREDIINIVHRMYMKD 335
Query: 241 GITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKEL 300
G++ +EV IV TFPNQALDFYGALRSRTYD++I +W++DIGG E LG KLLK++K ++L
Sbjct: 336 GLSFEEVSRIVDTFPNQALDFYGALRSRTYDQAILQWVNDIGGYEQLGEKLLKKKKREKL 395
Query: 301 PVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYMKNID 341
P F PP+ T++AL+ESG SL++EQ+LIM +KLSKEYMKN++
Sbjct: 396 PTFIPPKPTLDALIESGDSLVKEQELIMNSKLSKEYMKNLE 436
>gi|19387266|gb|AAL87177.1|AF480497_5 putative rubisco activase [Oryza sativa Japonica Group]
Length = 435
Score = 527 bits (1358), Expect = e-147, Method: Compositional matrix adjust.
Identities = 252/357 (70%), Positives = 295/357 (82%), Gaps = 36/357 (10%)
Query: 1 MNIAVGARAGVIDPLFAGNFLGKDSDIVFDYRQKVTRSFEYLQGDYYIAPVFMASLLCHI 60
MNIAVGAR+G++D LF GNFLGKDSDIVFDYRQK TR+FEYLQGDYYIAP+F+ +
Sbjct: 100 MNIAVGARSGIVDDLFVGNFLGKDSDIVFDYRQKATRTFEYLQGDYYIAPLFLDKV---- 155
Query: 61 VKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGK 120
GIWGGKGQGK+FQTELIF+AMG+EPVIMSAGELESE+AGEPG+
Sbjct: 156 -----------------GIWGGKGQGKTFQTELIFRAMGVEPVIMSAGELESEKAGEPGR 198
Query: 121 LIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRV 180
LIR+RYRTASQV+QNQGKMS LMIND+DAG+GRFGNTQMTVNNQIV+GTLMNL+DNPTRV
Sbjct: 199 LIRDRYRTASQVIQNQGKMSVLMINDLDAGVGRFGNTQMTVNNQIVIGTLMNLADNPTRV 258
Query: 181 SIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKD 240
SIGQ WRESD+T+R+PII TGNDFST+YAPLIRDGRMEKFYWQP EDI+NIVHRMY KD
Sbjct: 259 SIGQKWRESDVTHRVPIIVTGNDFSTLYAPLIRDGRMEKFYWQPGREDIINIVHRMYIKD 318
Query: 241 GITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISK---------------WIDDIGGVE 285
G++ ++V +V TFPNQALDFYGALRSRTYDR+I + W+++IGG E
Sbjct: 319 GLSFEDVSKVVDTFPNQALDFYGALRSRTYDRAILQLLKMYFFANTVEDVLWVEEIGGHE 378
Query: 286 NLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYMKNIDD 342
L KLLKR+K +ELP F PP+ TV+AL+ESG SL++EQ+LIM +KLSKEYMKN+DD
Sbjct: 379 QLNEKLLKRKKGEELPTFIPPKTTVDALIESGDSLVKEQELIMNSKLSKEYMKNLDD 435
>gi|168063726|ref|XP_001783820.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162664649|gb|EDQ51360.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 458
Score = 513 bits (1320), Expect = e-143, Method: Compositional matrix adjust.
Identities = 235/339 (69%), Positives = 290/339 (85%), Gaps = 1/339 (0%)
Query: 1 MNIAVGARAGVIDPLFAGNFLGKDSDIVFDYRQKVTRSFEYLQGDYYIAPVFMASLLCHI 60
+NI VGAR G+ID LF G+FLGK++DIVF YRQKVTRSFE++ GDYYIAP FM ++ HI
Sbjct: 106 LNITVGARTGMIDSLFTGDFLGKEADIVFKYRQKVTRSFEHITGDYYIAPAFMDKVVTHI 165
Query: 61 VKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGK 120
VKNY+A ++ KVPLILG+WGGKGQGKSFQTELIF+AMGIEP+IMSAGE+ESE AGEPGK
Sbjct: 166 VKNYLAAQIDGKVPLILGVWGGKGQGKSFQTELIFKAMGIEPIIMSAGEMESEWAGEPGK 225
Query: 121 LIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRV 180
LIRERYR A V+ NQGKMSCLMIND+DAG+GRF NTQMTVNNQ+VVGTLMNL+DNP RV
Sbjct: 226 LIRERYRAAHLVINNQGKMSCLMINDLDAGIGRFENTQMTVNNQMVVGTLMNLADNPNRV 285
Query: 181 SIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKD 240
S+GQ WRE+DI NR+PII TGNDFSTI+APLIRDGRM+KFYWQP +D++ IV++MY+KD
Sbjct: 286 SVGQAWREADIVNRVPIIVTGNDFSTIWAPLIRDGRMDKFYWQPTRDDLVKIVYQMYKKD 345
Query: 241 GITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRK-DKE 299
G+++ ++G I+ TFPNQALDFYGALRSRTYD+ + +W+++IGG E +G KLL+R+K D
Sbjct: 346 GLSEADIGFIIDTFPNQALDFYGALRSRTYDKHVLEWVNEIGGAEQIGPKLLRRKKGDAP 405
Query: 300 LPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYMK 338
LP F PE+ V+ L+++GY L+ EQ ++ KLS EYMK
Sbjct: 406 LPEFIAPEQNVDDLIKAGYELVEEQNMVNNMKLSDEYMK 444
>gi|302769017|ref|XP_002967928.1| hypothetical protein SELMODRAFT_88296 [Selaginella moellendorffii]
gi|300164666|gb|EFJ31275.1| hypothetical protein SELMODRAFT_88296 [Selaginella moellendorffii]
Length = 421
Score = 501 bits (1290), Expect = e-139, Method: Compositional matrix adjust.
Identities = 233/338 (68%), Positives = 291/338 (86%), Gaps = 4/338 (1%)
Query: 1 MNIAVGARAGVIDPLFAGNFLGKDSDIVFDYRQKVTRSFEYLQGDYYIAPVFMASLLCHI 60
MNI VGAR G+ID +F G+FLGK++DIVF YRQKVTRSFE+LQGDYYIAP F+ +L HI
Sbjct: 76 MNITVGARQGMIDSVFVGDFLGKEADIVFAYRQKVTRSFEHLQGDYYIAPAFL--VLTHI 133
Query: 61 VKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGK 120
VKNY+A L+ VPLILG+WGGKGQGK+FQTELIF+AMG+EPVIMSAGE+ESERAGEPG+
Sbjct: 134 VKNYVAEQLDTSVPLILGVWGGKGQGKTFQTELIFKAMGVEPVIMSAGEMESERAGEPGR 193
Query: 121 LIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRV 180
LIR+RYRTA+QVV+NQGK+SCLMINDIDAG+GRF NTQMTVNNQIVVGTLMNL+DNPT+V
Sbjct: 194 LIRDRYRTAAQVVKNQGKLSCLMINDIDAGIGRFENTQMTVNNQIVVGTLMNLADNPTQV 253
Query: 181 SIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKD 240
S+GQDWRE D+ R+PII TGNDFST++APLIRDGRM+KFYWQP+ ED++NIV+RMY KD
Sbjct: 254 SVGQDWREGDVIKRVPIIVTGNDFSTLWAPLIRDGRMDKFYWQPSREDLINIVYRMYSKD 313
Query: 241 GITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKEL 300
G+++ +V +IV FPNQALDFYGAL+SR D + KW++ GG E L N++ ++ K K +
Sbjct: 314 GLSRVDVETIVDKFPNQALDFYGALKSRACDEELWKWLESNGGPEKL-NEIFRQSKKKTI 372
Query: 301 PVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYMK 338
F PPE+T+ +LL++G SL+ EQ+++ + +LS EYMK
Sbjct: 373 D-FNPPEQTLTSLLKAGTSLVEEQKMVTKMRLSDEYMK 409
>gi|302761150|ref|XP_002963997.1| hypothetical protein SELMODRAFT_82367 [Selaginella moellendorffii]
gi|300167726|gb|EFJ34330.1| hypothetical protein SELMODRAFT_82367 [Selaginella moellendorffii]
Length = 421
Score = 500 bits (1288), Expect = e-139, Method: Compositional matrix adjust.
Identities = 233/338 (68%), Positives = 291/338 (86%), Gaps = 4/338 (1%)
Query: 1 MNIAVGARAGVIDPLFAGNFLGKDSDIVFDYRQKVTRSFEYLQGDYYIAPVFMASLLCHI 60
MNI VGAR G+ID +F G+FLGK++DIVF YRQKVTRSFE+LQGDYYIAP F+ +L HI
Sbjct: 76 MNITVGARQGMIDNVFVGDFLGKEADIVFAYRQKVTRSFEHLQGDYYIAPAFL--VLTHI 133
Query: 61 VKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGK 120
VKNY+A L+ VPLILG+WGGKGQGK+FQTELIF+AMG+EPVIMSAGE+ESERAGEPG+
Sbjct: 134 VKNYVAEQLDTSVPLILGVWGGKGQGKTFQTELIFKAMGVEPVIMSAGEMESERAGEPGR 193
Query: 121 LIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRV 180
LIR+RYRTA+QVV+NQGK+SCLMINDIDAG+GRF NTQMTVNNQIVVGTLMNL+DNPT+V
Sbjct: 194 LIRDRYRTAAQVVKNQGKLSCLMINDIDAGIGRFENTQMTVNNQIVVGTLMNLADNPTQV 253
Query: 181 SIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKD 240
S+GQDWRE D+ R+PII TGNDFST++APLIRDGRM+KFYWQP+ ED++NIV+RMY KD
Sbjct: 254 SVGQDWREGDVIKRVPIIVTGNDFSTLWAPLIRDGRMDKFYWQPSREDLINIVYRMYSKD 313
Query: 241 GITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKEL 300
G+++ +V +IV FPNQALDFYGAL+SR D + KW++ GG E L N++ ++ K K +
Sbjct: 314 GLSRVDVETIVDKFPNQALDFYGALKSRACDEELWKWLESNGGPEKL-NEIFRQSKKKTI 372
Query: 301 PVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYMK 338
F PPE+T+ +LL++G SL+ EQ+++ + +LS EYMK
Sbjct: 373 D-FNPPEQTLTSLLKAGTSLVEEQKMVTKMRLSDEYMK 409
>gi|47176692|gb|AAT12492.1| putative RuBisCo activase protein [Zantedeschia hybrid cultivar]
Length = 244
Score = 424 bits (1090), Expect = e-116, Method: Compositional matrix adjust.
Identities = 199/244 (81%), Positives = 223/244 (91%)
Query: 99 GIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQ 158
GIEP+IMSAGELESE AGEPG+LIRERYRTASQVVQNQGKMSCL INDIDAGLGRFGNTQ
Sbjct: 1 GIEPIIMSAGELESENAGEPGRLIRERYRTASQVVQNQGKMSCLTINDIDAGLGRFGNTQ 60
Query: 159 MTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRME 218
+TVNNQI VGTLMNLSDNPTRVSIGQ WRESD+T+RIP+I TGNDFST+YAPLIRDGRME
Sbjct: 61 VTVNNQIAVGTLMNLSDNPTRVSIGQKWRESDVTHRIPVIVTGNDFSTLYAPLIRDGRME 120
Query: 219 KFYWQPNLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWI 278
KFYWQP EDI+NIV RMYEKDGI++D V SIV +FPNQALDFYGALRSRTYD+S KWI
Sbjct: 121 KFYWQPTHEDIINIVQRMYEKDGISRDAVESIVDSFPNQALDFYGALRSRTYDKSTLKWI 180
Query: 279 DDIGGVENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYMK 338
D+IGG ENL +KLL+ RK+ +LP F PP++T+EALLESG+SL+ EQ+LIM TKLSKEYMK
Sbjct: 181 DEIGGYENLSDKLLRERKEGKLPTFVPPKQTLEALLESGHSLIEEQELIMNTKLSKEYMK 240
Query: 339 NIDD 342
N+DD
Sbjct: 241 NMDD 244
>gi|5903100|gb|AAD55658.1|AC008017_31 Highly similar to ribulose-1,5-bisphosphate carboxylase/oxygenase
activase [Arabidopsis thaliana]
Length = 245
Score = 421 bits (1081), Expect = e-115, Method: Compositional matrix adjust.
Identities = 196/245 (80%), Positives = 225/245 (91%)
Query: 98 MGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNT 157
MG+EPVIMSAGELES+RAGEPG+LIR+RYRTASQV+QNQGKMS LMINDIDAGLGRFG T
Sbjct: 1 MGVEPVIMSAGELESDRAGEPGRLIRDRYRTASQVIQNQGKMSVLMINDIDAGLGRFGET 60
Query: 158 QMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRM 217
QMTVNNQIVVGTLMNL+DNPTRVS+GQ+WRE+D+ NR+P+I TGNDFST+YAPLIR+GRM
Sbjct: 61 QMTVNNQIVVGTLMNLADNPTRVSVGQEWREADMVNRVPLIVTGNDFSTLYAPLIREGRM 120
Query: 218 EKFYWQPNLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKW 277
EKFYWQP EDI+NIV RMYEKDGI++ +V SIV FPNQALDFYGALRSRTYDRSI KW
Sbjct: 121 EKFYWQPTREDIVNIVSRMYEKDGISRKDVISIVDKFPNQALDFYGALRSRTYDRSILKW 180
Query: 278 IDDIGGVENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYM 337
+D+ GG+E LG LL+R+K +E+P FT PE+TVEALLESGYSL+ EQ+LIMETKLSKEYM
Sbjct: 181 VDEAGGMETLGKVLLRRKKTQEVPQFTAPEQTVEALLESGYSLINEQKLIMETKLSKEYM 240
Query: 338 KNIDD 342
KN+DD
Sbjct: 241 KNMDD 245
>gi|307108081|gb|EFN56322.1| hypothetical protein CHLNCDRAFT_144763 [Chlorella variabilis]
Length = 434
Score = 391 bits (1004), Expect = e-106, Method: Compositional matrix adjust.
Identities = 190/353 (53%), Positives = 253/353 (71%), Gaps = 18/353 (5%)
Query: 1 MNIAVGARAGVIDPLFAGNFLGKDSDIV-FDYRQKVTRSFEYLQGDYYIAPVFMASLLCH 59
+N+ G AG+ID +F GN LG SDI R R++ + GDYYIAP F+ + H
Sbjct: 71 INVDHGQTAGMIDSIFTGNVLGHKSDIADGSLRTYEFRTYNNIVGDYYIAPRFLEKIALH 130
Query: 60 IVKNYIAHL----LNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERA 115
I KN++ +VPLILGIWGGKGQGK+FQTEL F+ +G+EP+IMSAGELE+E A
Sbjct: 131 IAKNFLLEFGALDSATRVPLILGIWGGKGQGKTFQTELCFKKLGVEPIIMSAGELENEWA 190
Query: 116 GEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSD 175
G PGKLIRERYR A++V + GK+SCLMIND+DAG+G F NTQ+TVNNQ+VVGTLMN+ D
Sbjct: 191 GVPGKLIRERYRRAAEVSKVHGKLSCLMINDLDAGIGHFENTQITVNNQMVVGTLMNICD 250
Query: 176 NPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHR 235
NPTR+SIGQ W E+D+T RIPII TGNDFSTI+APL+RDGRM+KFYWQP ED++ I+H+
Sbjct: 251 NPTRISIGQGWMENDVTRRIPIIVTGNDFSTIFAPLVRDGRMDKFYWQPTEEDLVGILHQ 310
Query: 236 MYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWI----------DDIGGVE 285
MY+ DG+++ ++ ++++ FP Q LDF+GALRS TYD I +WI +D +
Sbjct: 311 MYKDDGLSESDMAALLRAFPGQTLDFFGALRSSTYDGQIRQWIKQDVIHGEIAEDNQNMR 370
Query: 286 NLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYMK 338
LG +LL++ ++LP F P + T+ L+E G L EQ ++ +LS EY+K
Sbjct: 371 ELGRRLLRQ---EDLPQFEPVDLTLLMLMEEGRRLQAEQDMVNSMRLSDEYLK 420
>gi|384253471|gb|EIE26946.1| hypothetical protein COCSUDRAFT_11792, partial [Coccomyxa
subellipsoidea C-169]
Length = 404
Score = 372 bits (955), Expect = e-100, Method: Compositional matrix adjust.
Identities = 187/359 (52%), Positives = 253/359 (70%), Gaps = 22/359 (6%)
Query: 1 MNIAVGARAGVIDPLFAGNFLGKDSDIV-FDYRQKVTRSFEYLQGDYYIAPVFMASLLCH 59
+N++ G + ID LF GN LG +SDI R RSF + GDYY++P F+ ++ H
Sbjct: 35 INVSHGQSSKFIDHLFTGNVLGHESDIADGSLRGWEFRSFANIVGDYYVSPRFLDAVAMH 94
Query: 60 IVKNYI----AHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERA 115
IVKN++ A + +VPLILGIWG KGQGK+FQTEL F+ +GIEPV+MSAGELESE A
Sbjct: 95 IVKNWMVDNGAFDPSHRVPLILGIWGPKGQGKTFQTELTFKKLGIEPVVMSAGELESEWA 154
Query: 116 GEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSD 175
G PG+LIR+RYR A++V + +G++ CLMIND+DAG+G N Q TVNNQ+V GTLMNL D
Sbjct: 155 GAPGRLIRDRYRRAAEVAKVRGRLPCLMINDLDAGVGIQENVQRTVNNQMVSGTLMNLCD 214
Query: 176 NPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHR 235
NP RVS+ Q WR+SD+ R+PII TGNDFST++APL+RDGRM KFYW+P+ D+LNI+H+
Sbjct: 215 NPNRVSVFQVWRDSDLVQRVPIIVTGNDFSTLFAPLVRDGRMAKFYWEPDRIDLLNILHQ 274
Query: 236 MYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWI----------DDIGGVE 285
MY++DG++ ++ +++ TFP Q+LDF+GALR+ TYD I +WI D+ +
Sbjct: 275 MYKEDGLSVEDTQTLLDTFPGQSLDFFGALRAATYDNQIRRWIKEEVVKADITDEDANMR 334
Query: 286 NLGNKLLK-----RRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYMKN 339
L +L+ RRKD LP F P + +E LL+ G+ L EQ+ + KLS+EYMKN
Sbjct: 335 ELSKRLIDHMHVVRRKD--LPSFEPVDLKLEDLLKEGHRLAEEQENVNRLKLSEEYMKN 391
>gi|159491655|ref|XP_001703775.1| RuBisCO activase-like protein [Chlamydomonas reinhardtii]
gi|158270456|gb|EDO96301.1| RuBisCO activase-like protein [Chlamydomonas reinhardtii]
Length = 533
Score = 348 bits (892), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 181/354 (51%), Positives = 235/354 (66%), Gaps = 14/354 (3%)
Query: 1 MNIAVGARAGVIDPLFAGNFLGKDSDIVFDYRQKVT-RSFEYLQGDYYIAPVFMASLLCH 59
+N+ G ID LFAG LG SDI + V R F + GDYY+AP F+ + H
Sbjct: 118 INVDHGQSVDHIDSLFAGEVLGHKSDIADGSLRAVDFRVFNNIVGDYYVAPAFLMKVAMH 177
Query: 60 IVKNYIAHL----LNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERA 115
+ KNY+ L N +VPLILGIWG KG GK+FQTEL + +G E V+MS+GELE E A
Sbjct: 178 MAKNYLFDLGAMSANTRVPLILGIWGEKGMGKTFQTELALKKLGAETVVMSSGELEHEWA 237
Query: 116 GEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSD 175
G PGKLIRERYR AS++ + +GKM+ L+I+DIDAGLG F + Q+TVNNQIV+GTLMN+ D
Sbjct: 238 GTPGKLIRERYRKASEMSKVRGKMTALLIHDIDAGLGHFDHVQVTVNNQIVIGTLMNICD 297
Query: 176 NPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHR 235
NP VS GQDW R PII TGNDFS ++APLIRDGRM+K+YW+P ED++NIV +
Sbjct: 298 NPNVVSTGQDWFAVSRIRRTPIIVTGNDFSKMFAPLIRDGRMDKYYWKPTREDMVNIVLQ 357
Query: 236 MYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWID-DIGGVE------NLG 288
MY+ DGIT+ +V +++ F +Q LDFYGALR+ TYD I WI D+ G E NL
Sbjct: 358 MYQDDGITRRDVEALLDRFRHQPLDFYGALRASTYDEQIRDWIKTDVTGEEFIADAANLS 417
Query: 289 N--KLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYMKNI 340
N K L E+P F P T++ L+ G L EQQ + + KLS++Y+K++
Sbjct: 418 NMAKTLLSVDRSEMPKFEPVRLTLDMLVAEGERLEMEQQQVNDHKLSEQYLKHV 471
>gi|302803723|ref|XP_002983614.1| hypothetical protein SELMODRAFT_445595 [Selaginella moellendorffii]
gi|300148451|gb|EFJ15110.1| hypothetical protein SELMODRAFT_445595 [Selaginella moellendorffii]
Length = 440
Score = 344 bits (883), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 167/334 (50%), Positives = 233/334 (69%), Gaps = 11/334 (3%)
Query: 10 GVIDPLFAGNF-LGKDSDIV--FDYRQKVTRSFEY--LQGDYYIAPVFMASLLCHIVKNY 64
G++D L+ G +G + I+ ++Y R+F + + +YIAP FM L+ HI KN+
Sbjct: 94 GMVDTLYQGAMGMGTQTAIMSSYEYISTAQRNFAFDNTKDGFYIAPAFMEKLMIHIAKNF 153
Query: 65 IAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRE 124
++ L N+KVPLILGIWGGKGQGKSFQ EL+F +G+ P++MSAGELES AGEP KLIR+
Sbjct: 154 MS-LPNIKVPLILGIWGGKGQGKSFQCELVFSKLGVNPIMMSAGELESGNAGEPAKLIRQ 212
Query: 125 RYRTASQVVQNQGKMSCLMINDIDAGLGRF-GNTQMTVNNQIVVGTLMNLSDNPTRVSIG 183
RYR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ+V TLMN++DNPT V +
Sbjct: 213 RYREAADIIKKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLP 272
Query: 184 QDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGIT 243
+ + +I R+PII TGNDFST+YAPLIRDGRMEK+YW P ED + + ++ DGI
Sbjct: 273 GIYNKEEIP-RVPIIVTGNDFSTLYAPLIRDGRMEKYYWAPTREDRIGVCKGIFRTDGIA 331
Query: 244 KDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVF 303
+D++ +V FP Q++DF+GALR+R YD + KWI+ GVEN+G+KL+ R P F
Sbjct: 332 EDDMVKLVDAFPGQSIDFFGALRARVYDDEVRKWIEST-GVENIGSKLVNSRDGP--PTF 388
Query: 304 TPPEKTVEALLESGYSLLREQQLIMETKLSKEYM 337
P T+ L+ GY L++EQ+ + +L+++YM
Sbjct: 389 AKPAMTINKLMSYGYMLVKEQENVKRVQLAEKYM 422
>gi|302802165|ref|XP_002982838.1| hypothetical protein SELMODRAFT_268623 [Selaginella moellendorffii]
gi|300149428|gb|EFJ16083.1| hypothetical protein SELMODRAFT_268623 [Selaginella moellendorffii]
Length = 440
Score = 343 bits (879), Expect = 8e-92, Method: Compositional matrix adjust.
Identities = 167/334 (50%), Positives = 233/334 (69%), Gaps = 11/334 (3%)
Query: 10 GVIDPLFAGNF-LGKDSDIV--FDYRQKVTRSFEY--LQGDYYIAPVFMASLLCHIVKNY 64
G++D L+ G +G + I+ ++Y R+F + + +YIAP FM L+ HI KN+
Sbjct: 94 GMVDTLYQGAIGMGTQNAIMSSYEYISTAQRNFAFDNTKDGFYIAPAFMEKLMIHIAKNF 153
Query: 65 IAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRE 124
++ L N+KVPLILGIWGGKGQGKSFQ EL+F +G+ P++MSAGELES AGEP KLIR+
Sbjct: 154 MS-LPNIKVPLILGIWGGKGQGKSFQCELVFSKLGVNPIMMSAGELESGNAGEPAKLIRQ 212
Query: 125 RYRTASQVVQNQGKMSCLMINDIDAGLGRF-GNTQMTVNNQIVVGTLMNLSDNPTRVSIG 183
RYR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ+V TLMN++DNPT V +
Sbjct: 213 RYREAADIIKKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLP 272
Query: 184 QDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGIT 243
+ + +I R+PII TGNDFST+YAPLIRDGRMEK+YW P ED + + ++ DGI+
Sbjct: 273 GIYNKEEIP-RVPIIVTGNDFSTLYAPLIRDGRMEKYYWAPTREDRIGVCKGIFRTDGIS 331
Query: 244 KDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVF 303
D++ +V FP Q++DF+GALR+R YD + KWI+ GVEN+G+KL+ R P F
Sbjct: 332 DDDMVRLVDAFPGQSIDFFGALRARVYDDEVRKWIEST-GVENIGSKLVNSRDGP--PTF 388
Query: 304 TPPEKTVEALLESGYSLLREQQLIMETKLSKEYM 337
P T+ L+ GY L++EQ+ + +L+++YM
Sbjct: 389 AKPAMTINKLMSYGYMLVKEQENVKRVQLAEKYM 422
>gi|326493048|dbj|BAJ84985.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326524450|dbj|BAK00608.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 206
Score = 339 bits (870), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 156/206 (75%), Positives = 182/206 (88%)
Query: 137 GKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIP 196
GKMSCLMIND+DAGLGRFGNTQMTVNNQIVVGTLMNL+DNP RVS+GQ WRESDIT+RIP
Sbjct: 1 GKMSCLMINDLDAGLGRFGNTQMTVNNQIVVGTLMNLADNPNRVSVGQKWRESDITHRIP 60
Query: 197 IIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITKDEVGSIVKTFPN 256
II TGNDFST+YAPLIRDGRMEKFYWQP EDI+NI+HRMY KDG++ +EV SIV TFPN
Sbjct: 61 IIATGNDFSTLYAPLIRDGRMEKFYWQPTREDIINIIHRMYTKDGLSLEEVSSIVDTFPN 120
Query: 257 QALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVFTPPEKTVEALLES 316
QALDFYGALRSRTYD++I +W++DIGG E LG KLLKR+ ++LP F PP+ T++AL++S
Sbjct: 121 QALDFYGALRSRTYDQAILQWVNDIGGYEQLGEKLLKRKNREKLPTFIPPKPTLDALIQS 180
Query: 317 GYSLLREQQLIMETKLSKEYMKNIDD 342
G SL+ EQ +M + LSKEYMKNIDD
Sbjct: 181 GNSLVEEQAFVMNSNLSKEYMKNIDD 206
>gi|414585019|tpg|DAA35590.1| TPA: hypothetical protein ZEAMMB73_040721 [Zea mays]
Length = 203
Score = 335 bits (859), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 153/203 (75%), Positives = 182/203 (89%)
Query: 139 MSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPII 198
MSCLMIND+DAG+GRFGNTQMTVNNQI VGTLMNL+DNPTRVSIGQ WRESD+T+R+PII
Sbjct: 1 MSCLMINDLDAGVGRFGNTQMTVNNQIAVGTLMNLADNPTRVSIGQKWRESDVTHRVPII 60
Query: 199 FTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQA 258
TGNDFST+YAPLIRDGRMEKFYWQPN EDI++IVH MY KDG++ +EV IV FPNQA
Sbjct: 61 VTGNDFSTLYAPLIRDGRMEKFYWQPNREDIISIVHGMYIKDGLSVEEVSRIVDAFPNQA 120
Query: 259 LDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVFTPPEKTVEALLESGY 318
LDFYGALRSRTYD++I +W+++IGG E L KLLKR+K +ELP F PP+ T+EAL+ESGY
Sbjct: 121 LDFYGALRSRTYDQAILEWVEEIGGHEQLNEKLLKRKKGEELPTFIPPKPTLEALIESGY 180
Query: 319 SLLREQQLIMETKLSKEYMKNID 341
SL++EQ+LIM +KLSKEYMKN++
Sbjct: 181 SLVKEQELIMSSKLSKEYMKNLE 203
>gi|388515017|gb|AFK45570.1| unknown [Lotus japonicus]
Length = 184
Score = 334 bits (857), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 156/184 (84%), Positives = 174/184 (94%)
Query: 159 MTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRME 218
MTVNNQIVVGTLMNLSDNPTRVS+GQDWRESDITNRIPII TGNDFSTIYAPLIRDGRM+
Sbjct: 1 MTVNNQIVVGTLMNLSDNPTRVSVGQDWRESDITNRIPIIVTGNDFSTIYAPLIRDGRMD 60
Query: 219 KFYWQPNLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWI 278
KFYWQPN EDI NIVHRMYEKDGI++DEV IV TFPNQALDFYGALRSRTYD+SI KW+
Sbjct: 61 KFYWQPNREDIQNIVHRMYEKDGISRDEVERIVDTFPNQALDFYGALRSRTYDKSILKWV 120
Query: 279 DDIGGVENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYMK 338
DDIGGVEN G+K+LKRRKD+ LPVF PPE+TV+ALLESGYSL++EQ+L+ME+KLSKEYMK
Sbjct: 121 DDIGGVENFGSKILKRRKDQNLPVFIPPEQTVDALLESGYSLIKEQELVMESKLSKEYMK 180
Query: 339 NIDD 342
N++D
Sbjct: 181 NMED 184
>gi|8918361|dbj|BAA97584.1| RuBisCO activase small isoform precursor [Oryza sativa]
gi|62733169|gb|AAX95286.1| RuBisCO activase small isoform precursor [Oryza sativa Japonica
Group]
gi|77552726|gb|ABA95523.1| Ribulose bisphosphate carboxylase/oxygenase activase, chloroplast
precursor, putative, expressed [Oryza sativa Japonica
Group]
gi|215694316|dbj|BAG89309.1| unnamed protein product [Oryza sativa Japonica Group]
gi|347737190|gb|AEP20546.1| ribulose bisphosphate carboxylase activase small isoform [Oryza
sativa Japonica Group]
Length = 433
Score = 333 bits (854), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 161/303 (53%), Positives = 217/303 (71%), Gaps = 7/303 (2%)
Query: 36 TRSFEYLQGDYYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIF 95
T F+ G +YIAP FM L+ HI KN++ L N+KVPLILGIWGGKGQGKSFQ EL+F
Sbjct: 112 TYDFDNTMGGFYIAPAFMDKLVVHISKNFMT-LPNIKVPLILGIWGGKGQGKSFQCELVF 170
Query: 96 QAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG 155
MGI P++MSAGELES AGEP KLIR+RYR A+ +++ +GKM CL IND+DAG GR G
Sbjct: 171 AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMG 229
Query: 156 -NTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRD 214
TQ TVNNQ+V TLMN++DNPT V + + + D R+PII TGNDFST+YAPLIRD
Sbjct: 230 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKED-NPRVPIIVTGNDFSTLYAPLIRD 288
Query: 215 GRMEKFYWQPNLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSI 274
GRMEKFYW P +D + + ++ D + +++ IV +FP Q++DF+GALR+R YD +
Sbjct: 289 GRMEKFYWAPTRDDRVGVCKGIFRTDNVPDEDIVKIVDSFPGQSIDFFGALRARVYDDEV 348
Query: 275 SKWIDDIGGVENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSK 334
KW+ D GVEN+G +L+ R+ P F P+ T+E L+E GY L++EQ+ + +L++
Sbjct: 349 RKWVSDT-GVENIGKRLVNSREGP--PEFEQPKMTIEKLMEYGYMLVKEQENVKRVQLAE 405
Query: 335 EYM 337
+Y+
Sbjct: 406 QYL 408
>gi|109940135|sp|P93431.2|RCA_ORYSJ RecName: Full=Ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic; Short=RA; Short=RuBisCO activase; Flags:
Precursor
gi|8918359|dbj|BAA97583.1| RuBisCO activase large isoform precursor [Oryza sativa (japonica
cultivar-group)]
gi|32352158|dbj|BAC78572.1| ribulose-bisphosphate carboxylase activase large isoform precursor
protein [Oryza sativa Japonica Group]
gi|77552725|gb|ABA95522.1| Ribulose bisphosphate carboxylase/oxygenase activase, chloroplast
precursor, putative, expressed [Oryza sativa Japonica
Group]
gi|125578108|gb|EAZ19330.1| hypothetical protein OsJ_34880 [Oryza sativa Japonica Group]
gi|218186228|gb|EEC68655.1| hypothetical protein OsI_37096 [Oryza sativa Indica Group]
Length = 466
Score = 333 bits (854), Expect = 7e-89, Method: Compositional matrix adjust.
Identities = 161/303 (53%), Positives = 217/303 (71%), Gaps = 7/303 (2%)
Query: 36 TRSFEYLQGDYYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIF 95
T F+ G +YIAP FM L+ HI KN++ L N+KVPLILGIWGGKGQGKSFQ EL+F
Sbjct: 112 TYDFDNTMGGFYIAPAFMDKLVVHISKNFMT-LPNIKVPLILGIWGGKGQGKSFQCELVF 170
Query: 96 QAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG 155
MGI P++MSAGELES AGEP KLIR+RYR A+ +++ +GKM CL IND+DAG GR G
Sbjct: 171 AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMG 229
Query: 156 -NTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRD 214
TQ TVNNQ+V TLMN++DNPT V + + + D R+PII TGNDFST+YAPLIRD
Sbjct: 230 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKED-NPRVPIIVTGNDFSTLYAPLIRD 288
Query: 215 GRMEKFYWQPNLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSI 274
GRMEKFYW P +D + + ++ D + +++ IV +FP Q++DF+GALR+R YD +
Sbjct: 289 GRMEKFYWAPTRDDRVGVCKGIFRTDNVPDEDIVKIVDSFPGQSIDFFGALRARVYDDEV 348
Query: 275 SKWIDDIGGVENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSK 334
KW+ D GVEN+G +L+ R+ P F P+ T+E L+E GY L++EQ+ + +L++
Sbjct: 349 RKWVSDT-GVENIGKRLVNSREGP--PEFEQPKMTIEKLMEYGYMLVKEQENVKRVQLAE 405
Query: 335 EYM 337
+Y+
Sbjct: 406 QYL 408
>gi|108864713|gb|ABG22614.1| Ribulose bisphosphate carboxylase/oxygenase activase, chloroplast
precursor, putative, expressed [Oryza sativa Japonica
Group]
Length = 428
Score = 333 bits (854), Expect = 7e-89, Method: Compositional matrix adjust.
Identities = 161/303 (53%), Positives = 217/303 (71%), Gaps = 7/303 (2%)
Query: 36 TRSFEYLQGDYYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIF 95
T F+ G +YIAP FM L+ HI KN++ L N+KVPLILGIWGGKGQGKSFQ EL+F
Sbjct: 112 TYDFDNTMGGFYIAPAFMDKLVVHISKNFMT-LPNIKVPLILGIWGGKGQGKSFQCELVF 170
Query: 96 QAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG 155
MGI P++MSAGELES AGEP KLIR+RYR A+ +++ +GKM CL IND+DAG GR G
Sbjct: 171 AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMG 229
Query: 156 -NTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRD 214
TQ TVNNQ+V TLMN++DNPT V + + + D R+PII TGNDFST+YAPLIRD
Sbjct: 230 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKED-NPRVPIIVTGNDFSTLYAPLIRD 288
Query: 215 GRMEKFYWQPNLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSI 274
GRMEKFYW P +D + + ++ D + +++ IV +FP Q++DF+GALR+R YD +
Sbjct: 289 GRMEKFYWAPTRDDRVGVCKGIFRTDNVPDEDIVKIVDSFPGQSIDFFGALRARVYDDEV 348
Query: 275 SKWIDDIGGVENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSK 334
KW+ D GVEN+G +L+ R+ P F P+ T+E L+E GY L++EQ+ + +L++
Sbjct: 349 RKWVSDT-GVENIGKRLVNSREGP--PEFEQPKMTIEKLMEYGYMLVKEQENVKRVQLAE 405
Query: 335 EYM 337
+Y+
Sbjct: 406 QYL 408
>gi|108864712|gb|ABG22613.1| Ribulose bisphosphate carboxylase/oxygenase activase, chloroplast
precursor, putative, expressed [Oryza sativa Japonica
Group]
Length = 348
Score = 333 bits (853), Expect = 8e-89, Method: Compositional matrix adjust.
Identities = 161/303 (53%), Positives = 217/303 (71%), Gaps = 7/303 (2%)
Query: 36 TRSFEYLQGDYYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIF 95
T F+ G +YIAP FM L+ HI KN++ L N+KVPLILGIWGGKGQGKSFQ EL+F
Sbjct: 27 TYDFDNTMGGFYIAPAFMDKLVVHISKNFMT-LPNIKVPLILGIWGGKGQGKSFQCELVF 85
Query: 96 QAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG 155
MGI P++MSAGELES AGEP KLIR+RYR A+ +++ +GKM CL IND+DAG GR G
Sbjct: 86 AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMG 144
Query: 156 -NTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRD 214
TQ TVNNQ+V TLMN++DNPT V + + + D R+PII TGNDFST+YAPLIRD
Sbjct: 145 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKED-NPRVPIIVTGNDFSTLYAPLIRD 203
Query: 215 GRMEKFYWQPNLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSI 274
GRMEKFYW P +D + + ++ D + +++ IV +FP Q++DF+GALR+R YD +
Sbjct: 204 GRMEKFYWAPTRDDRVGVCKGIFRTDNVPDEDIVKIVDSFPGQSIDFFGALRARVYDDEV 263
Query: 275 SKWIDDIGGVENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSK 334
KW+ D GVEN+G +L+ R+ P F P+ T+E L+E GY L++EQ+ + +L++
Sbjct: 264 RKWVSDT-GVENIGKRLVNSREGP--PEFEQPKMTIEKLMEYGYMLVKEQENVKRVQLAE 320
Query: 335 EYM 337
+Y+
Sbjct: 321 QYL 323
>gi|118489408|gb|ABK96507.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 461
Score = 333 bits (853), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 166/336 (49%), Positives = 233/336 (69%), Gaps = 11/336 (3%)
Query: 10 GVIDPLF-AGNFLGKDSDIV--FDYRQKVTRSF--EYLQGDYYIAPVFMASLLCHIVKNY 64
G++D LF A G + ++ ++Y + R++ + + YYIAP FM ++ HI KN+
Sbjct: 92 GMVDSLFQAPQGTGTHNPVLSSYEYLSQGLRTYNLDNMMDGYYIAPAFMDKIVVHISKNF 151
Query: 65 IAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRE 124
++ L N+KVPLILGIWGGKGQGKSFQ EL+F MGI P++MSAGELES AGEP KLIR+
Sbjct: 152 MS-LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGISPIMMSAGELESGNAGEPAKLIRQ 210
Query: 125 RYRTASQVVQNQGKMSCLMINDIDAGLGRF-GNTQMTVNNQIVVGTLMNLSDNPTRVSIG 183
RYR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ+V TLMN++DNPT V +
Sbjct: 211 RYREAADIIKKKGKMCCLFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLP 270
Query: 184 QDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGIT 243
+ + D R+PII TGNDFST+YAPLIRDGRMEKFYW P +D + + +++ D +
Sbjct: 271 GMYNKED-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCIGIFKTDNVP 329
Query: 244 KDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVF 303
+D++ +V TFP Q++DF+GALR+R YD + KW+ + GVE++G KL+ R+ P F
Sbjct: 330 QDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWVSGV-GVESIGKKLVNSREGP--PTF 386
Query: 304 TPPEKTVEALLESGYSLLREQQLIMETKLSKEYMKN 339
P TVE L E G L++EQ+ + +L+ +Y+ +
Sbjct: 387 EQPAMTVEKLFEYGNMLVKEQENVKRVQLADKYLSD 422
>gi|118486739|gb|ABK95205.1| unknown [Populus trichocarpa]
Length = 475
Score = 332 bits (852), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 166/336 (49%), Positives = 233/336 (69%), Gaps = 11/336 (3%)
Query: 10 GVIDPLF-AGNFLGKDSDIV--FDYRQKVTRSF--EYLQGDYYIAPVFMASLLCHIVKNY 64
G++D LF A G + ++ ++Y + R++ + + +YIAP FM ++ HI KN+
Sbjct: 92 GMVDSLFQAPQGTGTHNPVLSSYEYLSQGLRTYNLDNMMDGFYIAPAFMDKIVVHISKNF 151
Query: 65 IAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRE 124
++ L N+KVPLILGIWGGKGQGKSFQ EL+F MGI P++MSAGELES AGEP KLIR+
Sbjct: 152 MS-LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGISPIMMSAGELESGNAGEPAKLIRQ 210
Query: 125 RYRTASQVVQNQGKMSCLMINDIDAGLGRF-GNTQMTVNNQIVVGTLMNLSDNPTRVSIG 183
RYR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ+V TLMN++DNPT V +
Sbjct: 211 RYREAADIIKKKGKMCCLFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLP 270
Query: 184 QDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGIT 243
+ + D R+PII TGNDFST+YAPLIRDGRMEKFYW P ED + + +++ D +
Sbjct: 271 GMYNKED-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCIGIFKTDNVP 329
Query: 244 KDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVF 303
+D++ +V TFP Q++DF+GALR+R YD + KW+ + GVE++G KL+ R+ P F
Sbjct: 330 EDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWVSGV-GVESIGKKLVNSREGP--PTF 386
Query: 304 TPPEKTVEALLESGYSLLREQQLIMETKLSKEYMKN 339
P TVE L E G L++EQ+ + +L+ +Y+ +
Sbjct: 387 EQPPMTVEKLFEYGNMLVKEQENVKRVQLADKYLSD 422
>gi|297612474|ref|NP_001068555.2| Os11g0707000 [Oryza sativa Japonica Group]
gi|255680411|dbj|BAF28918.2| Os11g0707000 [Oryza sativa Japonica Group]
Length = 350
Score = 332 bits (852), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 161/303 (53%), Positives = 217/303 (71%), Gaps = 7/303 (2%)
Query: 36 TRSFEYLQGDYYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIF 95
T F+ G +YIAP FM L+ HI KN++ L N+KVPLILGIWGGKGQGKSFQ EL+F
Sbjct: 29 TYDFDNTMGGFYIAPAFMDKLVVHISKNFMT-LPNIKVPLILGIWGGKGQGKSFQCELVF 87
Query: 96 QAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG 155
MGI P++MSAGELES AGEP KLIR+RYR A+ +++ +GKM CL IND+DAG GR G
Sbjct: 88 AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMG 146
Query: 156 -NTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRD 214
TQ TVNNQ+V TLMN++DNPT V + + + D R+PII TGNDFST+YAPLIRD
Sbjct: 147 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKED-NPRVPIIVTGNDFSTLYAPLIRD 205
Query: 215 GRMEKFYWQPNLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSI 274
GRMEKFYW P +D + + ++ D + +++ IV +FP Q++DF+GALR+R YD +
Sbjct: 206 GRMEKFYWAPTRDDRVGVCKGIFRTDNVPDEDIVKIVDSFPGQSIDFFGALRARVYDDEV 265
Query: 275 SKWIDDIGGVENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSK 334
KW+ D GVEN+G +L+ R+ P F P+ T+E L+E GY L++EQ+ + +L++
Sbjct: 266 RKWVSDT-GVENIGKRLVNSREGP--PEFEQPKMTIEKLMEYGYMLVKEQENVKRVQLAE 322
Query: 335 EYM 337
+Y+
Sbjct: 323 QYL 325
>gi|118489105|gb|ABK96359.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 476
Score = 332 bits (852), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 170/335 (50%), Positives = 233/335 (69%), Gaps = 13/335 (3%)
Query: 10 GVIDPLF-AGNFLGKDSDIV--FDYRQKVTRSFEY---LQGDYYIAPVFMASLLCHIVKN 63
G++D LF A G + I+ ++Y + R++ + G YYIAP FM L+ HI KN
Sbjct: 91 GMVDSLFQAPQGTGTHNPILSSYEYLSQGLRTYNLDNNMDG-YYIAPAFMDKLVVHISKN 149
Query: 64 YIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIR 123
+++ L N+KVPLILGIWGGKGQGKSFQ EL+F MGI P++MSAGELES AGEP KLIR
Sbjct: 150 FMS-LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIR 208
Query: 124 ERYRTASQVVQNQGKMSCLMINDIDAGLGRF-GNTQMTVNNQIVVGTLMNLSDNPTRVSI 182
+RYR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ+V TLMN++DNPT V +
Sbjct: 209 QRYREAADIIKKKGKMCCLFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQL 268
Query: 183 GQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGI 242
+ + D R+PII TGNDFST+YAPLIRDGRMEKFYW P +D + + +++ D I
Sbjct: 269 PGMYNKED-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCIGIFKSDKI 327
Query: 243 TKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPV 302
K+++ +V TFP Q++DF+GALR+R YD + KWI + GV+++G KL+ R P
Sbjct: 328 AKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGV-GVDSIGKKLVNSRDGP--PT 384
Query: 303 FTPPEKTVEALLESGYSLLREQQLIMETKLSKEYM 337
F P+ T+E LLE G L++EQ+ + +L+ +Y+
Sbjct: 385 FEQPKMTIEKLLEYGNMLVQEQENVKRVQLADKYL 419
>gi|224101023|ref|XP_002312110.1| predicted protein [Populus trichocarpa]
gi|222851930|gb|EEE89477.1| predicted protein [Populus trichocarpa]
Length = 438
Score = 332 bits (852), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 165/336 (49%), Positives = 233/336 (69%), Gaps = 11/336 (3%)
Query: 10 GVIDPLF-AGNFLGKDSDIV--FDYRQKVTRSF--EYLQGDYYIAPVFMASLLCHIVKNY 64
G++D LF A G + ++ ++Y + R++ + + +YIAP FM ++ HI KN+
Sbjct: 92 GMVDSLFQAPQGTGTHNPVLSSYEYLSQGLRTYNLDNMMDGFYIAPAFMDKIVVHISKNF 151
Query: 65 IAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRE 124
++ L N+KVPLILGIWGGKGQGKSFQ EL+F MGI P++MSAGELES AGEP KLIR+
Sbjct: 152 MS-LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGISPIMMSAGELESGNAGEPAKLIRQ 210
Query: 125 RYRTASQVVQNQGKMSCLMINDIDAGLGRF-GNTQMTVNNQIVVGTLMNLSDNPTRVSIG 183
RYR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ+V TLMN++DNPT V +
Sbjct: 211 RYREAADIIKKKGKMCCLFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLP 270
Query: 184 QDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGIT 243
+ + D R+P+I TGNDFST+YAPLIRDGRMEKFYW P ED + + +++ D +
Sbjct: 271 GMYNKED-NPRVPVIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCIGIFKTDNVP 329
Query: 244 KDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVF 303
+D++ +V TFP Q++DF+GALR+R YD + KW+ + GVE++G KL+ R+ P F
Sbjct: 330 EDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWVSGV-GVESIGKKLVNSREGP--PTF 386
Query: 304 TPPEKTVEALLESGYSLLREQQLIMETKLSKEYMKN 339
P TVE L E G L++EQ+ + +L+ +Y+ +
Sbjct: 387 EQPPMTVEKLFEYGNMLVKEQENVKRVQLADKYLSD 422
>gi|62733168|gb|AAX95285.1| RuBisCO activase small isoform precursor [Oryza sativa Japonica
Group]
gi|108864711|gb|ABG22612.1| Ribulose bisphosphate carboxylase/oxygenase activase, chloroplast
precursor, putative, expressed [Oryza sativa Japonica
Group]
Length = 357
Score = 332 bits (852), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 161/303 (53%), Positives = 217/303 (71%), Gaps = 7/303 (2%)
Query: 36 TRSFEYLQGDYYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIF 95
T F+ G +YIAP FM L+ HI KN++ L N+KVPLILGIWGGKGQGKSFQ EL+F
Sbjct: 36 TYDFDNTMGGFYIAPAFMDKLVVHISKNFMT-LPNIKVPLILGIWGGKGQGKSFQCELVF 94
Query: 96 QAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG 155
MGI P++MSAGELES AGEP KLIR+RYR A+ +++ +GKM CL IND+DAG GR G
Sbjct: 95 AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMG 153
Query: 156 -NTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRD 214
TQ TVNNQ+V TLMN++DNPT V + + + D R+PII TGNDFST+YAPLIRD
Sbjct: 154 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKED-NPRVPIIVTGNDFSTLYAPLIRD 212
Query: 215 GRMEKFYWQPNLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSI 274
GRMEKFYW P +D + + ++ D + +++ IV +FP Q++DF+GALR+R YD +
Sbjct: 213 GRMEKFYWAPTRDDRVGVCKGIFRTDNVPDEDIVKIVDSFPGQSIDFFGALRARVYDDEV 272
Query: 275 SKWIDDIGGVENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSK 334
KW+ D GVEN+G +L+ R+ P F P+ T+E L+E GY L++EQ+ + +L++
Sbjct: 273 RKWVSDT-GVENIGKRLVNSREGP--PEFEQPKMTIEKLMEYGYMLVKEQENVKRVQLAE 329
Query: 335 EYM 337
+Y+
Sbjct: 330 QYL 332
>gi|62733297|gb|AAX95414.1| RuBisCO activase small isoform precursor [Oryza sativa Japonica
Group]
Length = 466
Score = 332 bits (851), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 161/303 (53%), Positives = 217/303 (71%), Gaps = 7/303 (2%)
Query: 36 TRSFEYLQGDYYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIF 95
T F+ G +YIAP FM L+ HI KN++ L N+KVPLILGIWGGKGQGKSFQ EL+F
Sbjct: 150 TYDFDNTMGGFYIAPAFMDKLVVHISKNFMT-LPNIKVPLILGIWGGKGQGKSFQCELVF 208
Query: 96 QAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG 155
MGI P++MSAGELES AGEP KLIR+RYR A+ +++ +GKM CL IND+DAG GR G
Sbjct: 209 AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMG 267
Query: 156 -NTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRD 214
TQ TVNNQ+V TLMN++DNPT V + + + D R+PII TGNDFST+YAPLIRD
Sbjct: 268 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKED-NPRVPIIVTGNDFSTLYAPLIRD 326
Query: 215 GRMEKFYWQPNLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSI 274
GRMEKFYW P +D + + ++ D + +++ IV +FP Q++DF+GALR+R YD +
Sbjct: 327 GRMEKFYWAPTRDDRVGVCKGIFRTDNVPDEDIVKIVDSFPGQSIDFFGALRARVYDDEV 386
Query: 275 SKWIDDIGGVENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSK 334
KW+ D GVEN+G +L+ R+ P F P+ T+E L+E GY L++EQ+ + +L++
Sbjct: 387 RKWVSDT-GVENIGKRLVNSREGP--PEFEQPKMTIEKLMEYGYMLVKEQENVKRVQLAE 443
Query: 335 EYM 337
+Y+
Sbjct: 444 QYL 446
>gi|225580059|gb|ACN94267.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase
activase [Solenostemon scutellarioides]
Length = 436
Score = 331 bits (849), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 167/337 (49%), Positives = 236/337 (70%), Gaps = 13/337 (3%)
Query: 10 GVIDPLF-AGNFLGKDSDIV--FDYRQKVTRSFEYLQGDY---YIAPVFMASLLCHIVKN 63
G++D LF A + +G I+ ++Y + +++++L YIAP FM L+ H+ KN
Sbjct: 87 GMVDSLFQAPSGMGTHDAIMNSYEYISQGQKTYDHLDNTLDGLYIAPAFMDKLVVHLSKN 146
Query: 64 YIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIR 123
++ L N+KVPLILG+WGGKGQGKSFQ EL+F+ MGI P++MSAGELES AGEP KLIR
Sbjct: 147 FMT-LPNIKVPLILGVWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIR 205
Query: 124 ERYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSI 182
+RYR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ+V TLMN++DNPT V +
Sbjct: 206 QRYREAADLIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQL 264
Query: 183 GQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGI 242
+ + + R+PII TGNDFST+YAPLIRDGRMEKFYW P ED + + ++ DG+
Sbjct: 265 PGMYNKQE-NARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDGV 323
Query: 243 TKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPV 302
+ V +V TFP Q++DF+GALR+R YD + KW+ + GVEN+G +L+ R+ P
Sbjct: 324 PDEAVVRLVDTFPGQSIDFFGALRARVYDDEVRKWVSGV-GVENIGTRLVNSREGP--PK 380
Query: 303 FTPPEKTVEALLESGYSLLREQQLIMETKLSKEYMKN 339
F P+ T+E LLE G+ L++EQ+ + +L+ +Y+K+
Sbjct: 381 FEQPKMTLEKLLEYGFMLVQEQENVKRVQLADKYLKD 417
>gi|118486993|gb|ABK95328.1| unknown [Populus trichocarpa]
Length = 361
Score = 331 bits (848), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 165/336 (49%), Positives = 233/336 (69%), Gaps = 11/336 (3%)
Query: 10 GVIDPLF-AGNFLGKDSDIV--FDYRQKVTRSF--EYLQGDYYIAPVFMASLLCHIVKNY 64
G++D LF A G + ++ ++Y + R++ + + +YIAP FM ++ HI KN+
Sbjct: 13 GMVDSLFQAPQGTGTHNPVLSSYEYLSQGLRTYNLDNMMDGFYIAPAFMDKIVVHISKNF 72
Query: 65 IAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRE 124
++ L N+KVPLILGIWGGKGQGKSFQ EL+F MGI P++MSAGELES AGEP KLIR+
Sbjct: 73 MS-LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGISPIMMSAGELESGNAGEPAKLIRQ 131
Query: 125 RYRTASQVVQNQGKMSCLMINDIDAGLGRF-GNTQMTVNNQIVVGTLMNLSDNPTRVSIG 183
RYR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ+V TLMN++DNPT V +
Sbjct: 132 RYREAADIIKKKGKMCCLFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLP 191
Query: 184 QDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGIT 243
+ + D R+P+I TGNDFST+YAPLIRDGRMEKFYW P ED + + +++ D +
Sbjct: 192 GMYNKED-NPRVPVIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCIGIFKTDNVP 250
Query: 244 KDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVF 303
+D++ +V TFP Q++DF+GALR+R YD + KW+ + GVE++G KL+ R+ P F
Sbjct: 251 EDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWVSGV-GVESIGKKLVNSREGP--PTF 307
Query: 304 TPPEKTVEALLESGYSLLREQQLIMETKLSKEYMKN 339
P TVE L E G L++EQ+ + +L+ +Y+ +
Sbjct: 308 EQPPMTVEKLFEYGNMLVKEQENVKRVQLADKYLSD 343
>gi|242072103|ref|XP_002451328.1| hypothetical protein SORBIDRAFT_05g027870 [Sorghum bicolor]
gi|241937171|gb|EES10316.1| hypothetical protein SORBIDRAFT_05g027870 [Sorghum bicolor]
Length = 440
Score = 328 bits (842), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 167/335 (49%), Positives = 232/335 (69%), Gaps = 14/335 (4%)
Query: 10 GVIDPLFAGNFLGKDSDIV----FDY--RQKVTRSFEYLQGDYYIAPVFMASLLCHIVKN 63
G+ID LF +G + + +DY + + T SF+ + +YI+ FM L+ H+ KN
Sbjct: 93 GMIDSLFQAP-MGDGTHVAVLSSYDYISQGQKTYSFDNMMDGFYISKSFMDKLVVHLSKN 151
Query: 64 YIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIR 123
+++ L N+KVPLILGIWGGKGQGKSFQ EL+F MGI P++MSAGELES AGEP KLIR
Sbjct: 152 FMS-LPNIKVPLILGIWGGKGQGKSFQCELVFSKMGIIPIMMSAGELESGNAGEPAKLIR 210
Query: 124 ERYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSI 182
+RYR A+ ++ ++GKMSCL IND+DAG GR G TQ TVNNQ+V TLMN++DNPT V +
Sbjct: 211 QRYREAADLI-SKGKMSCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQL 269
Query: 183 GQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGI 242
+ + D R+PII TGNDFST+YAPLIRDGRMEKFYW P ED + + ++ DG+
Sbjct: 270 PGMYNKVD-NARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDGV 328
Query: 243 TKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPV 302
++ V +V TFP Q++DF+GALR+R YD + +W+ + GVEN+ KL+ ++ P
Sbjct: 329 DEEHVVQLVDTFPGQSIDFFGALRARVYDDEVRRWVAET-GVENIAKKLVNSKEGP--PT 385
Query: 303 FTPPEKTVEALLESGYSLLREQQLIMETKLSKEYM 337
F P+ T+E LLE G+ L+ EQ+ + +L+ +Y+
Sbjct: 386 FEQPKMTIEKLLEYGHMLVAEQENVKRVQLADKYL 420
>gi|118487547|gb|ABK95600.1| unknown [Populus trichocarpa]
Length = 476
Score = 328 bits (840), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 163/316 (51%), Positives = 222/316 (70%), Gaps = 18/316 (5%)
Query: 35 VTRSFEYL-QG-----------DYYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGG 82
V S+EYL QG +YIAP FM L+ HI KN+++ L N+KVPLILG+WGG
Sbjct: 109 VLNSYEYLSQGLRTYNLDNNMDGFYIAPAFMDKLVVHISKNFMS-LPNIKVPLILGVWGG 167
Query: 83 KGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCL 142
KGQGKSFQ EL+F MGI P++MSAGELES AGEP KLIR+RYR A+ +++ +GKM CL
Sbjct: 168 KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKKGKMCCL 227
Query: 143 MINDIDAGLGRF-GNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTG 201
IND+DAG GR G TQ TVNNQ+V TLMN++DNPT V + + + + R+PII TG
Sbjct: 228 FINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEE-NPRVPIIVTG 286
Query: 202 NDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDF 261
NDFST+YAPLIRDGRMEKFYW P +D + + +++ D I K+++ +V TFP Q++DF
Sbjct: 287 NDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCIGIFKSDKIPKEDIVKLVDTFPGQSIDF 346
Query: 262 YGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLL 321
+GALR+R YD + KW+ + GV+++G KL+ R+ P F P+ T+E LLE G L+
Sbjct: 347 FGALRARVYDDEVRKWVSGV-GVDSIGKKLVNSREGP--PTFEQPKMTIEKLLEYGNMLV 403
Query: 322 REQQLIMETKLSKEYM 337
+EQ+ + +L+ +Y+
Sbjct: 404 QEQENVKRVQLADKYL 419
>gi|21950712|gb|AAM78591.1| rubisco activase [Chenopodium quinoa]
Length = 438
Score = 328 bits (840), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 164/334 (49%), Positives = 229/334 (68%), Gaps = 12/334 (3%)
Query: 10 GVIDPLF-----AGNFLGKDSDIVFDYRQKVTRSFEYLQGDYYIAPVFMASLLCHIVKNY 64
G++D LF +G + S + ++ + + + + G++YIAP FM ++ HI KNY
Sbjct: 91 GMVDSLFQAPMDSGTHVPVQSSLEYESQGLRKYNIDNMLGNFYIAPSFMDKIVVHITKNY 150
Query: 65 IAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRE 124
+ +L N+KVPLILGIWGGKGQGKSFQ EL+F MGI P++MSAGELES AGEP KLIR+
Sbjct: 151 L-NLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQ 209
Query: 125 RYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIG 183
RYR A+ ++ +GKM L IND+DAG GR G TQ TVNNQ+V TLMN++DNPT V +
Sbjct: 210 RYREAADIIA-KGKMCALFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLP 268
Query: 184 QDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGIT 243
+ + + R+PII TGNDFST+YAPLIRDGRMEKFYW P ED + + ++ D +
Sbjct: 269 GMYNKQE-NARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVATGIFRTDNVP 327
Query: 244 KDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVF 303
+D V +V TFP Q++DF+GALR+R YD + KW+ ++ G++ +G KL+ R PVF
Sbjct: 328 EDHVVKLVDTFPGQSIDFFGALRARVYDDEVRKWVSEV-GIDAVGKKLVNSRDGP--PVF 384
Query: 304 TPPEKTVEALLESGYSLLREQQLIMETKLSKEYM 337
P+ T+E LLE G L++EQ+ + +L+ +Y+
Sbjct: 385 EQPKMTLEKLLEYGNMLVQEQENVKRVQLADKYL 418
>gi|158726716|gb|ABW80752.1| chloroplast ribulose 1,5-bisphosphate carboxylase/oxygenase
activase [Flaveria bidentis]
Length = 438
Score = 327 bits (838), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 168/340 (49%), Positives = 228/340 (67%), Gaps = 25/340 (7%)
Query: 10 GVIDPLFAGNFLGKDSDIVFDYRQKVTRSFEYLQ-----------GDYYIAPVFMASLLC 58
G++D LF +DS F V S+EY+ +YIAP FM L+
Sbjct: 89 GMVDSLFQAP---QDSGTHF----AVMSSYEYISTGLRTYLDNNMDGFYIAPAFMDKLVV 141
Query: 59 HIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEP 118
HI KN++ L N+KVPLILG+WGGKGQGKSFQ EL+F MGI P++MSAGELES AGEP
Sbjct: 142 HITKNFMT-LPNIKVPLILGVWGGKGQGKSFQCELVFAKMGITPIMMSAGELESGNAGEP 200
Query: 119 GKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNP 177
KLIR+RYR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ+V TLMN++DNP
Sbjct: 201 AKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNP 259
Query: 178 TRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMY 237
T V + + + + R+PII TGNDFST+YAPLIRDGRMEKFYW P +D + + ++
Sbjct: 260 TNVQLPGMYNKEE-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCIGIF 318
Query: 238 EKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKD 297
D + K+++ +V TFP Q++DF+GALR+R YD + KWI ++ GVE +G KL+ R+
Sbjct: 319 RTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWIGEV-GVETIGKKLVNSREG 377
Query: 298 KELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYM 337
P F P+ T++ LLE GY L++EQ+ + +L+ Y+
Sbjct: 378 P--PTFEQPKMTIDKLLEYGYMLVQEQENVKRVQLADTYL 415
>gi|162458161|ref|NP_001104921.1| ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic
precursor [Zea mays]
gi|29429152|sp|Q9ZT00.3|RCA_MAIZE RecName: Full=Ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic; Short=RA; Short=RuBisCO activase; Flags:
Precursor
gi|19855034|gb|AAC97932.3| ribulose-1,5-bisphosphate carboxylase/oxygenase activase precursor
[Zea mays]
gi|195620038|gb|ACG31849.1| ribulose bisphosphate carboxylase/oxygenase activase [Zea mays]
gi|313574198|dbj|BAJ41042.1| ribulose-1,5-bisphosphate carboxylase/oxygenase activase small
isoform [Zea mays]
gi|413920136|gb|AFW60068.1| ribulose bisphosphate carboxylase/oxygenase activase, Precursor
isoform 1 [Zea mays]
gi|413920137|gb|AFW60069.1| ribulose bisphosphate carboxylase/oxygenase activase, Precursor
isoform 2 [Zea mays]
Length = 433
Score = 327 bits (838), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 166/335 (49%), Positives = 230/335 (68%), Gaps = 14/335 (4%)
Query: 10 GVIDPLFAGNFLGKDSDIV----FDYRQKVTRSFEY--LQGDYYIAPVFMASLLCHIVKN 63
G++D LF +G + + +DY + +S+ + + +YIA FM L+ H+ KN
Sbjct: 86 GLVDNLFQAP-MGDGTHVAVLSSYDYISQGQKSYNFDNMMDGFYIAKGFMDKLVVHLSKN 144
Query: 64 YIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIR 123
++ L N+KVPLILGIWGGKGQGKSFQ EL+F MGI P++MSAGELES AGEP KLIR
Sbjct: 145 FMT-LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGITPIMMSAGELESGNAGEPAKLIR 203
Query: 124 ERYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSI 182
+RYR AS +++ +GKMSCL IND+DAG GR G TQ TVNNQ+V TLMN++DNPT V +
Sbjct: 204 QRYREASDLIK-KGKMSCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQL 262
Query: 183 GQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGI 242
+ + D R+PII TGNDFST+YAPLIRDGRMEKFYW P ED + + ++ DG+
Sbjct: 263 PGMYNKED-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDGV 321
Query: 243 TKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPV 302
++ V +V TFP Q++DF+GALR+R YD + +W+ + GVEN+ KL+ ++ P
Sbjct: 322 DEEHVVQLVDTFPGQSIDFFGALRARVYDDEVRRWVSET-GVENIARKLVNSKEGP--PT 378
Query: 303 FTPPEKTVEALLESGYSLLREQQLIMETKLSKEYM 337
F P+ T+E LLE G+ L+ EQ+ + +L+ +Y+
Sbjct: 379 FEQPKITIEKLLEYGHMLVAEQENVKRVQLADKYL 413
>gi|357469233|ref|XP_003604901.1| Ribulose bisphosphate carboxylase/oxygenase activase [Medicago
truncatula]
gi|355505956|gb|AES87098.1| Ribulose bisphosphate carboxylase/oxygenase activase [Medicago
truncatula]
Length = 476
Score = 327 bits (837), Expect = 7e-87, Method: Compositional matrix adjust.
Identities = 158/292 (54%), Positives = 212/292 (72%), Gaps = 7/292 (2%)
Query: 47 YIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMS 106
YIAP FM L+ HI KN++ +L N+K+PLILGIWGGKGQGKSFQ EL+F MGI P++MS
Sbjct: 134 YIAPAFMDKLVVHITKNFL-NLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGISPIMMS 192
Query: 107 AGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQI 165
AGELES AGEP KLIR+RYR AS +++ +GKM CL IND+DAG GR G TQ TVNNQ+
Sbjct: 193 AGELESGNAGEPAKLIRQRYREASDIIR-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQM 251
Query: 166 VVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPN 225
V TLMN++DNPT V + + + + R+PII TGNDFST+YAPLIRDGRMEKFYW P
Sbjct: 252 VNATLMNIADNPTNVQLPGMYNKEE-NARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT 310
Query: 226 LEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVE 285
+D + + ++ DG+ KD++ IV TFP Q++DF+GALR+R YD + WI I GVE
Sbjct: 311 RDDRVGVCQGIFRTDGVPKDDIVKIVDTFPGQSIDFFGALRARVYDDEVRNWISGI-GVE 369
Query: 286 NLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYM 337
++G +L+ ++ P F P+ T++ LLE G L++EQ+ + +L+ +Y+
Sbjct: 370 SIGKRLVNSKEGP--PTFEQPKMTIDKLLEYGNMLVQEQENVKRVQLADKYL 419
>gi|224109480|ref|XP_002315210.1| predicted protein [Populus trichocarpa]
gi|222864250|gb|EEF01381.1| predicted protein [Populus trichocarpa]
Length = 424
Score = 327 bits (837), Expect = 7e-87, Method: Compositional matrix adjust.
Identities = 163/316 (51%), Positives = 222/316 (70%), Gaps = 18/316 (5%)
Query: 35 VTRSFEYL-QG-----------DYYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGG 82
V S+EYL QG +YIAP FM L+ HI KN+++ L N+KVPLILG+WGG
Sbjct: 59 VLNSYEYLSQGLRTYNLDNNMDGFYIAPAFMDKLVVHISKNFMS-LPNIKVPLILGVWGG 117
Query: 83 KGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCL 142
KGQGKSFQ EL+F MGI P++MSAGELES AGEP KLIR+RYR A+ +++ +GKM CL
Sbjct: 118 KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKKGKMCCL 177
Query: 143 MINDIDAGLGRF-GNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTG 201
IND+DAG GR G TQ TVNNQ+V TLMN++DNPT V + + + + R+PII TG
Sbjct: 178 FINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEE-NPRVPIIVTG 236
Query: 202 NDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDF 261
NDFST+YAPLIRDGRMEKFYW P +D + + +++ D I K+++ +V TFP Q++DF
Sbjct: 237 NDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCIGIFKSDKIPKEDIVKLVDTFPGQSIDF 296
Query: 262 YGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLL 321
+GALR+R YD + KW+ + GV+++G KL+ R+ P F P+ T+E LLE G L+
Sbjct: 297 FGALRARVYDDEVRKWVSGV-GVDSIGKKLVNSREGP--PTFEQPKMTIEKLLEYGNMLV 353
Query: 322 REQQLIMETKLSKEYM 337
+EQ+ + +L+ +Y+
Sbjct: 354 QEQENVKRVQLADKYL 369
>gi|357155664|ref|XP_003577195.1| PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase A,
chloroplastic-like [Brachypodium distachyon]
Length = 465
Score = 326 bits (835), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 167/335 (49%), Positives = 226/335 (67%), Gaps = 14/335 (4%)
Query: 10 GVIDPLFAGNFLGKDSDIVFDYRQKVTRS-----FEYLQGDYYIAPVFMASLLCHIVKNY 64
G++D LF V ++ +++ F+ G +YIAP FM L+ H+ KN+
Sbjct: 81 GIVDSLFQAPMGDGTHVAVLSSQEYISQGLRKYDFDNTMGGFYIAPAFMDKLVVHLSKNF 140
Query: 65 IAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRE 124
+ L N+KVPLILGIWGGKGQGKSFQ EL+F MGI P++MSAGELES AGEP KLIR+
Sbjct: 141 MT-LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQ 199
Query: 125 RYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIG 183
RYR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ+V TLMN++D PT V +
Sbjct: 200 RYREAADLIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADAPTNVQLP 258
Query: 184 QDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGIT 243
+ + + R+PII TGNDFST+YAPLIRDGRMEKFYW P ED + + +++ D I+
Sbjct: 259 GMYNKEE-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCRGIFQTDNIS 317
Query: 244 KDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPV- 302
+ V IV TFP Q++DF+GALR+R YD + KW+ G+EN+G KL+ K+ PV
Sbjct: 318 DESVIKIVDTFPGQSIDFFGALRARVYDDEVRKWVSST-GIENIGKKLV---NSKDGPVS 373
Query: 303 FTPPEKTVEALLESGYSLLREQQLIMETKLSKEYM 337
F P+ T+E LLE G+ L++EQ + +L+ +YM
Sbjct: 374 FEQPKMTIEKLLEYGHMLVQEQDNVKRVQLADKYM 408
>gi|10720247|sp|O49074.1|RCA_SOLPN RecName: Full=Ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic; Short=RA; Short=RuBisCO activase; Flags:
Precursor
gi|2707330|gb|AAC15236.1| rubisco activase [Solanum pennellii]
Length = 459
Score = 326 bits (835), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 164/335 (48%), Positives = 226/335 (67%), Gaps = 12/335 (3%)
Query: 10 GVIDPLFAGNFLGKDSDIVFDYRQKVTRSFEYLQGD-----YYIAPVFMASLLCHIVKNY 64
G++D LF + + + V+++ + Q D +YIAP FM L+ HI KN+
Sbjct: 89 GLVDSLFQAPTGTGTHHAIMNSYEYVSQALKTYQLDNKLDGFYIAPAFMDKLVVHITKNF 148
Query: 65 IAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRE 124
+ L N+KVPLILG+WGGKGQGKSFQ EL+F+ MGI P++MSAGELES AGEP KLIR+
Sbjct: 149 LT-LPNIKVPLILGVWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQ 207
Query: 125 RYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIG 183
RYR A+++++ +G M CL IND+DAG GR G TQ TVNNQ+V TLMN++DNPT V +
Sbjct: 208 RYREAAEIIR-KGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLP 266
Query: 184 QDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGIT 243
+ + + R+PII TGNDFST+YAPLIRDGRMEKFYW P ED + + ++ D +
Sbjct: 267 GMYNKQE-NARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDNVP 325
Query: 244 KDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVF 303
++ V IV +FP Q++DF+GALR+R YD + KW+ G+E +G KLL R P F
Sbjct: 326 EEAVVKIVDSFPGQSIDFFGALRARVYDDEVRKWVSGT-GIELIGEKLLNSRDGP--PTF 382
Query: 304 TPPEKTVEALLESGYSLLREQQLIMETKLSKEYMK 338
P+ T+E LLE G L++EQ+ + +L++ Y+K
Sbjct: 383 EQPKMTLEKLLEYGNMLVQEQENVKRVQLAETYLK 417
>gi|1778414|gb|AAC28134.1| ribulose-1,5-bisphosphate carboxylase/oxygenase activase [Oryza
sativa Japonica Group]
Length = 432
Score = 326 bits (835), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 160/303 (52%), Positives = 216/303 (71%), Gaps = 8/303 (2%)
Query: 36 TRSFEYLQGDYYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIF 95
T F+ G +YIAP FM L+ HI KN++ L N+KVPLILGIWGGKGQGKSFQ EL+F
Sbjct: 112 TYDFDNTMGGFYIAPSFMDKLVVHISKNFMT-LPNIKVPLILGIWGGKGQGKSFQCELVF 170
Query: 96 QAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG 155
MGI P++MSAGELES GEP KLIR+RYR A+ +++ +GKM CL IND+DAG GR G
Sbjct: 171 AKMGINPIMMSAGELESGN-GEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMG 228
Query: 156 -NTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRD 214
TQ TVNNQ+V TLMN++DNPT V + + + D R+PII TGNDFST+YAPLIRD
Sbjct: 229 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKED-NPRVPIIVTGNDFSTLYAPLIRD 287
Query: 215 GRMEKFYWQPNLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSI 274
GRMEKFYW P +D + + ++ D + +++ IV +FP Q++DF+GALR+R YD +
Sbjct: 288 GRMEKFYWAPTRDDRVGVCKGIFRTDNVPDEDIVKIVDSFPGQSIDFFGALRARVYDDEV 347
Query: 275 SKWIDDIGGVENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSK 334
KW+ D GVEN+G +L+ R+ P F P+ T+E L+E GY L++EQ+ + +L++
Sbjct: 348 RKWVSDT-GVENIGKRLVNSREGP--PEFEQPKMTIEKLIEYGYMLVKEQENVKRVQLAE 404
Query: 335 EYM 337
+Y+
Sbjct: 405 QYL 407
>gi|32481063|gb|AAP83928.1| Rubisco activase beta form precursor [Deschampsia antarctica]
Length = 428
Score = 325 bits (834), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 166/335 (49%), Positives = 225/335 (67%), Gaps = 14/335 (4%)
Query: 10 GVIDPLFAGNFLGKDSDIVFDYRQKVTRS-----FEYLQGDYYIAPVFMASLLCHIVKNY 64
G++D LF + V + V++ F+ G +YIAP FM L+ H+ KN+
Sbjct: 81 GIVDSLFQAPMGDGTHEAVLSSYEYVSQGLKKYDFDNTMGGFYIAPAFMDKLVVHLSKNF 140
Query: 65 IAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRE 124
+ L N+K+PLILGIWGGKGQGKSFQ EL+F MGI P++MSAGELES AGEP KLIR+
Sbjct: 141 MT-LPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQ 199
Query: 125 RYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIG 183
RYR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ+V TLMN++D PT V +
Sbjct: 200 RYREAADMIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADAPTNVQLP 258
Query: 184 QDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGIT 243
+ + + R+PII TGNDFST+YAPLIRDGRMEKFYW P ED + + +++ D ++
Sbjct: 259 GMYNKEE-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFQTDNVS 317
Query: 244 KDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPV- 302
+ V IV TFP Q++DF+GALR+R YD + KW+ G+EN+G +L+ R + PV
Sbjct: 318 DESVVKIVDTFPGQSIDFFGALRARVYDVEVRKWVSST-GIENIGKRLVNSR---DGPVT 373
Query: 303 FTPPEKTVEALLESGYSLLREQQLIMETKLSKEYM 337
F P+ TVE LLE G+ L++EQ + +L+ YM
Sbjct: 374 FEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYM 408
>gi|303290017|ref|XP_003064296.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226454612|gb|EEH51918.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 505
Score = 325 bits (834), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 182/391 (46%), Positives = 241/391 (61%), Gaps = 50/391 (12%)
Query: 2 NIAVGARAGVIDPLFAGNF-----LGKDSDIV---FDYRQ-KVTRSFEYLQGDYYIAPVF 52
N VGAR G+ID +FAG LG DSDI YR + RSF+ L GD+++ P+F
Sbjct: 115 NTEVGARKGIIDDVFAGTANAKFNLGADSDIASGRLRYRDVEHVRSFKNLFGDFHVPPLF 174
Query: 53 MASLLCHIVKNYIAHLLN-----------VKVPLILGIWGGKGQGKSFQTELIFQAMGIE 101
+ + H+ KN +A N KVPLILG+WG KG GK+F EL +A+ I
Sbjct: 175 VDKVSLHVAKNLMADSDNPGASANPLGGLTKVPLILGVWGAKGCGKTFNLELACKALDIT 234
Query: 102 PVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTV 161
PV+MSAGELE E AG PG+LIR RYR A+++++N GKMSCL+INDIDAG+GRF TQ TV
Sbjct: 235 PVVMSAGELEDEWAGNPGRLIRSRYRKAAEIIRNHGKMSCLIINDIDAGVGRFKRTQATV 294
Query: 162 NNQIVVGTLMNLSDNPTRVSIGQD-----WRESDITNRIPIIFTGNDFSTIYAPLIRDGR 216
N Q+V+GTLMNL D+PT+VS +D +RE + R+PII TGND ST+YAPL+RDGR
Sbjct: 295 NTQMVMGTLMNLCDHPTQVSNEEDDEIHEYREEERIRRVPIIVTGNDLSTLYAPLLRDGR 354
Query: 217 MEKFYWQPNLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISK 276
MEKFYWQP DI ++VH MY D ++++ V +V Q LDF+GA R+R YDR I +
Sbjct: 355 MEKFYWQPTRTDIADMVHAMYRDDDVSRETVERLVARHEGQPLDFFGATRARMYDRCIVE 414
Query: 277 WI--------DDIGG----VENLGNKLLK----RRKDKEL---------PVFTPPEKTVE 311
W D + G + +G L+K R D E P FT + + E
Sbjct: 415 WAESFRSETPDPVTGQRHVTKAMGEHLMKNRTRERPDDEHDPGDFVLWKPDFTVQDCSEE 474
Query: 312 ALLESGYSLLREQQLIMETKLSKEYMKNIDD 342
AL+ L REQ+L+ E +LS++YM+ + D
Sbjct: 475 ALMRHADDLAREQRLVNEKRLSEDYMRTMKD 505
>gi|223948607|gb|ACN28387.1| unknown [Zea mays]
Length = 383
Score = 325 bits (834), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 166/335 (49%), Positives = 230/335 (68%), Gaps = 14/335 (4%)
Query: 10 GVIDPLFAGNFLGKDSDIV----FDYRQKVTRSFEY--LQGDYYIAPVFMASLLCHIVKN 63
G++D LF +G + + +DY + +S+ + + +YIA FM L+ H+ KN
Sbjct: 36 GLVDNLFQAP-MGDGTHVAVLSSYDYISQGQKSYNFDNMMDGFYIAKGFMDKLVVHLSKN 94
Query: 64 YIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIR 123
++ L N+KVPLILGIWGGKGQGKSFQ EL+F MGI P++MSAGELES AGEP KLIR
Sbjct: 95 FMT-LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGITPIMMSAGELESGNAGEPAKLIR 153
Query: 124 ERYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSI 182
+RYR AS +++ +GKMSCL IND+DAG GR G TQ TVNNQ+V TLMN++DNPT V +
Sbjct: 154 QRYREASDLIK-KGKMSCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQL 212
Query: 183 GQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGI 242
+ + D R+PII TGNDFST+YAPLIRDGRMEKFYW P ED + + ++ DG+
Sbjct: 213 PGMYNKED-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDGV 271
Query: 243 TKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPV 302
++ V +V TFP Q++DF+GALR+R YD + +W+ + GVEN+ KL+ ++ P
Sbjct: 272 DEEHVVQLVDTFPGQSIDFFGALRARVYDDEVRRWVSET-GVENIARKLVNSKEGP--PT 328
Query: 303 FTPPEKTVEALLESGYSLLREQQLIMETKLSKEYM 337
F P+ T+E LLE G+ L+ EQ+ + +L+ +Y+
Sbjct: 329 FEQPKITIEKLLEYGHMLVAEQENVKRVQLADKYL 363
>gi|225434859|ref|XP_002282236.1| PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase 2,
chloroplastic isoform 1 [Vitis vinifera]
gi|297746032|emb|CBI16088.3| unnamed protein product [Vitis vinifera]
Length = 472
Score = 325 bits (833), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 159/293 (54%), Positives = 210/293 (71%), Gaps = 7/293 (2%)
Query: 46 YYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIM 105
+YIAP FM L+ HI KN++ L N+KVPLILGIWGGKGQGKSFQ EL+F MGI P++M
Sbjct: 131 FYIAPAFMDKLVVHITKNFMT-LPNIKVPLILGIWGGKGQGKSFQCELVFSKMGINPIMM 189
Query: 106 SAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQ 164
SAGELES AGEP KLIR+RYR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ
Sbjct: 190 SAGELESGNAGEPAKLIRQRYREAADIIR-KGKMCCLFINDLDAGAGRLGGTTQYTVNNQ 248
Query: 165 IVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQP 224
+V TLMN++DNPT V + + + + R+PII TGNDFST+YAPLIRDGRMEKFYW P
Sbjct: 249 MVNATLMNIADNPTNVQLPGMYNKEE-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 307
Query: 225 NLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGV 284
N ED + + ++ D + D++ IV TFP Q++DF+GALR+R YD + KWI + GV
Sbjct: 308 NREDRIGVCKGIFRSDNVPDDDIVKIVDTFPGQSIDFFGALRARVYDDEVRKWISGV-GV 366
Query: 285 ENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYM 337
+ +G KL+ ++ P F P+ T+E LLE G L+ EQ+ + +L+ +Y+
Sbjct: 367 DFIGKKLVNSKEGP--PTFEQPKMTIEKLLEYGNMLVMEQENVKRVQLADKYL 417
>gi|147856329|emb|CAN83893.1| hypothetical protein VITISV_039112 [Vitis vinifera]
Length = 472
Score = 325 bits (833), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 159/293 (54%), Positives = 210/293 (71%), Gaps = 7/293 (2%)
Query: 46 YYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIM 105
+YIAP FM L+ HI KN++ L N+KVPLILGIWGGKGQGKSFQ EL+F MGI P++M
Sbjct: 131 FYIAPAFMDKLVVHITKNFMT-LPNIKVPLILGIWGGKGQGKSFQCELVFSKMGINPIMM 189
Query: 106 SAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQ 164
SAGELES AGEP KLIR+RYR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ
Sbjct: 190 SAGELESGNAGEPAKLIRQRYREAADIIR-KGKMCCLFINDLDAGAGRLGGTTQYTVNNQ 248
Query: 165 IVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQP 224
+V TLMN++DNPT V + + + + R+PII TGNDFST+YAPLIRDGRMEKFYW P
Sbjct: 249 MVNATLMNIADNPTNVQLPGMYNKEE-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 307
Query: 225 NLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGV 284
N ED + + ++ D + D++ IV TFP Q++DF+GALR+R YD + KWI + GV
Sbjct: 308 NREDRIGVCKGIFRSDNVPDDDIVKIVDTFPGQSIDFFGALRARVYDDEVRKWISGV-GV 366
Query: 285 ENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYM 337
+ +G KL+ ++ P F P+ T+E LLE G L+ EQ+ + +L+ +Y+
Sbjct: 367 DFIGKKLVNSKEGP--PTFEQPKMTIEKLLEYGNMLVMEQENVKRVQLADKYL 417
>gi|116789461|gb|ABK25255.1| unknown [Picea sitchensis]
Length = 440
Score = 325 bits (833), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 166/334 (49%), Positives = 224/334 (67%), Gaps = 12/334 (3%)
Query: 10 GVIDPLFAGNFLGKDSDIV---FDYRQKVTRSFEY--LQGDYYIAPVFMASLLCHIVKNY 64
G +D LF ++V +DY R++++ YYIAP FM LL HI KN+
Sbjct: 93 GKVDSLFQAPMGSGTHNVVMSTYDYISTAQRTYDFDNTMDGYYIAPSFMDKLLVHISKNF 152
Query: 65 IAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRE 124
+ +L N+KVPLILGIWGGKGQGKSFQ EL+F +GI P++MSAGELES AGEP KL+R+
Sbjct: 153 M-NLPNIKVPLILGIWGGKGQGKSFQCELVFAKLGINPIMMSAGELESGDAGEPAKLLRK 211
Query: 125 RYRTASQVVQNQGKMSCLMINDIDAGLGRFGNT-QMTVNNQIVVGTLMNLSDNPTRVSIG 183
RYR AS +V+ +GKM L IND+DAG GR G+T Q TVNNQ+V TLMN++DNPT V +
Sbjct: 212 RYREASDIVK-KGKMCVLFINDLDAGAGRMGSTTQYTVNNQMVNATLMNIADNPTNVQLP 270
Query: 184 QDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGIT 243
+ + D R+PI+ TGNDFST+YAPLIRDGRMEKFYW P +D + + ++ D +
Sbjct: 271 GMYNKQD-NPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCQGIFRADNVH 329
Query: 244 KDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVF 303
D+V +V TFP Q++DF+GALR+R YD + KW+ G++N+G KL+ ++ P F
Sbjct: 330 PDDVVRLVDTFPGQSIDFFGALRARVYDDEVRKWVAGT-GIQNIGKKLINSKEGP--PTF 386
Query: 304 TPPEKTVEALLESGYSLLREQQLIMETKLSKEYM 337
P T+E LLE G L+ EQ + +L+ +YM
Sbjct: 387 EKPAMTIEKLLEYGNMLVGEQDNVKRVQLADKYM 420
>gi|115334981|gb|ABI94078.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase
activase large protein isoform [Acer rubrum]
Length = 474
Score = 325 bits (833), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 166/333 (49%), Positives = 227/333 (68%), Gaps = 11/333 (3%)
Query: 10 GVIDPLF-AGNFLGKDSDIVFDYRQKVTRSFEYLQGD---YYIAPVFMASLLCHIVKNYI 65
G++D LF A + G ++ Y T YL+ +YIAPVFM L+ HI KN++
Sbjct: 91 GLVDSLFQAPSGTGTHYAVMSSYDYISTGLRTYLENSMDGFYIAPVFMGKLVVHITKNFM 150
Query: 66 AHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRER 125
+ L N+K+PLILGIWGGKGQGKSFQ EL+F MGI P++MSAGELES AGEP KLIR+R
Sbjct: 151 S-LPNIKIPLILGIWGGKGQGKSFQCELVFAKMGITPIMMSAGELESGNAGEPAKLIRQR 209
Query: 126 YRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIGQ 184
YR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ+V TLMN++DNPT V +
Sbjct: 210 YREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTSVQLPG 268
Query: 185 DWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITK 244
+ + + R+PII TGNDFST+YAPLIRDGRMEKFYW P ED + + ++ D +
Sbjct: 269 MYNKEE-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRSDNVAD 327
Query: 245 DEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVFT 304
+E+ +V TFP Q++DF+GALR+R YD + KWI I GV+++G L+ + P F
Sbjct: 328 NELIKLVDTFPGQSIDFFGALRARVYDDEVRKWISGI-GVDSIGKNLVNSKNGP--PTFE 384
Query: 305 PPEKTVEALLESGYSLLREQQLIMETKLSKEYM 337
P+ T++ LLE G L++EQ+ + +L+ +Y+
Sbjct: 385 QPKMTIDKLLEYGNMLVQEQENVKRVQLADKYL 417
>gi|116787538|gb|ABK24548.1| unknown [Picea sitchensis]
Length = 480
Score = 325 bits (832), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 166/334 (49%), Positives = 224/334 (67%), Gaps = 12/334 (3%)
Query: 10 GVIDPLFAGNFLGKDSDIV---FDYRQKVTRSFEY--LQGDYYIAPVFMASLLCHIVKNY 64
G +D LF ++V +DY R++++ YYIAP FM LL HI KN+
Sbjct: 93 GKVDSLFQAPMGSGTHNVVMSTYDYISTAQRTYDFDNTMDGYYIAPSFMDKLLVHISKNF 152
Query: 65 IAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRE 124
+ +L N+KVPLILGIWGGKGQGKSFQ EL+F +GI P++MSAGELES AGEP KL+R+
Sbjct: 153 M-NLPNIKVPLILGIWGGKGQGKSFQCELVFAKLGINPIMMSAGELESGDAGEPAKLLRK 211
Query: 125 RYRTASQVVQNQGKMSCLMINDIDAGLGRFGNT-QMTVNNQIVVGTLMNLSDNPTRVSIG 183
RYR AS +V+ +GKM L IND+DAG GR G+T Q TVNNQ+V TLMN++DNPT V +
Sbjct: 212 RYREASDIVK-KGKMCVLFINDLDAGAGRMGSTTQYTVNNQMVNATLMNIADNPTNVQLP 270
Query: 184 QDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGIT 243
+ + D R+PI+ TGNDFST+YAPLIRDGRMEKFYW P +D + + ++ D +
Sbjct: 271 GMYNKQD-NPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCQGIFRADNVH 329
Query: 244 KDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVF 303
D+V +V TFP Q++DF+GALR+R YD + KW+ G++N+G KL+ ++ P F
Sbjct: 330 PDDVVRLVDTFPGQSIDFFGALRARVYDDEVRKWVAGT-GIQNIGKKLINSKEGP--PTF 386
Query: 304 TPPEKTVEALLESGYSLLREQQLIMETKLSKEYM 337
P T+E LLE G L+ EQ + +L+ +YM
Sbjct: 387 EKPAMTIEKLLEYGNMLVGEQDNVKRVQLADKYM 420
>gi|359478916|ref|XP_003632187.1| PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase 2,
chloroplastic isoform 2 [Vitis vinifera]
Length = 440
Score = 325 bits (832), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 159/293 (54%), Positives = 210/293 (71%), Gaps = 7/293 (2%)
Query: 46 YYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIM 105
+YIAP FM L+ HI KN++ L N+KVPLILGIWGGKGQGKSFQ EL+F MGI P++M
Sbjct: 131 FYIAPAFMDKLVVHITKNFMT-LPNIKVPLILGIWGGKGQGKSFQCELVFSKMGINPIMM 189
Query: 106 SAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQ 164
SAGELES AGEP KLIR+RYR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ
Sbjct: 190 SAGELESGNAGEPAKLIRQRYREAADIIR-KGKMCCLFINDLDAGAGRLGGTTQYTVNNQ 248
Query: 165 IVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQP 224
+V TLMN++DNPT V + + + + R+PII TGNDFST+YAPLIRDGRMEKFYW P
Sbjct: 249 MVNATLMNIADNPTNVQLPGMYNKEE-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 307
Query: 225 NLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGV 284
N ED + + ++ D + D++ IV TFP Q++DF+GALR+R YD + KWI + GV
Sbjct: 308 NREDRIGVCKGIFRSDNVPDDDIVKIVDTFPGQSIDFFGALRARVYDDEVRKWISGV-GV 366
Query: 285 ENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYM 337
+ +G KL+ ++ P F P+ T+E LLE G L+ EQ+ + +L+ +Y+
Sbjct: 367 DFIGKKLVNSKEGP--PTFEQPKMTIEKLLEYGNMLVMEQENVKRVQLADKYL 417
>gi|449450762|ref|XP_004143131.1| PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic-like [Cucumis sativus]
gi|449496654|ref|XP_004160190.1| PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic-like [Cucumis sativus]
gi|239837354|gb|ACS29559.1| chloroplast rubisco activase [Cucumis sativus]
Length = 611
Score = 325 bits (832), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 166/334 (49%), Positives = 222/334 (66%), Gaps = 12/334 (3%)
Query: 10 GVIDPLFAGNFLGKDSDIV---FDYRQKVTRSFEYLQG--DYYIAPVFMASLLCHIVKNY 64
G+ DPLF + V ++Y R + Y +YIAP FM L HIVKN+
Sbjct: 87 GLADPLFQAPMGTGTHNAVLSSYEYISAGLRDYSYDNNVDGFYIAPAFMDKLTVHIVKNF 146
Query: 65 IAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRE 124
+ L N+KVPLILG+WGGKGQGKSFQ EL+F MGI P++MSAGELES AGEP KLIR+
Sbjct: 147 LT-LPNIKVPLILGVWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQ 205
Query: 125 RYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIG 183
RYR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ+V TLMN++DNPT V +
Sbjct: 206 RYREAADIIK-KGKMCCLFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLP 264
Query: 184 QDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGIT 243
+ + + R+PII TGNDFST+YAPLIRDGRM+KFYW P ED + I ++ DG+
Sbjct: 265 GMYNKEE-NPRVPIIVTGNDFSTLYAPLIRDGRMDKFYWAPTREDRIGICTGIFRTDGVP 323
Query: 244 KDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVF 303
+++ +V TFP Q++DF+GALR+R YD + KW + GVE +G L+ ++ P F
Sbjct: 324 FEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWAVGV-GVERIGRNLVNSKESP--PTF 380
Query: 304 TPPEKTVEALLESGYSLLREQQLIMETKLSKEYM 337
P+ T+E LLE G L+ EQ+ + KL+ +Y+
Sbjct: 381 DQPKMTIEKLLEYGNMLVMEQENVKRVKLADKYL 414
>gi|115334979|gb|ABI94077.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase
activase small protein isoform [Acer rubrum]
Length = 437
Score = 325 bits (832), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 166/333 (49%), Positives = 227/333 (68%), Gaps = 11/333 (3%)
Query: 10 GVIDPLF-AGNFLGKDSDIVFDYRQKVTRSFEYLQGD---YYIAPVFMASLLCHIVKNYI 65
G++D LF A + G ++ Y T YL+ +YIAPVFM L+ HI KN++
Sbjct: 91 GLVDSLFQAPSGTGTHYAVMSSYDYISTGLRTYLENSMDGFYIAPVFMGKLVVHITKNFM 150
Query: 66 AHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRER 125
+ L N+K+PLILGIWGGKGQGKSFQ EL+F MGI P++MSAGELES AGEP KLIR+R
Sbjct: 151 S-LPNIKIPLILGIWGGKGQGKSFQCELVFAKMGITPIMMSAGELESGNAGEPAKLIRQR 209
Query: 126 YRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIGQ 184
YR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ+V TLMN++DNPT V +
Sbjct: 210 YREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTSVQLPG 268
Query: 185 DWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITK 244
+ + + R+PII TGNDFST+YAPLIRDGRMEKFYW P ED + + ++ D +
Sbjct: 269 MYNKEE-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRSDNVAD 327
Query: 245 DEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVFT 304
+E+ +V TFP Q++DF+GALR+R YD + KWI I GV+++G L+ + P F
Sbjct: 328 NELIKLVDTFPGQSIDFFGALRARVYDDEVRKWISGI-GVDSIGKNLVNSKNGP--PTFE 384
Query: 305 PPEKTVEALLESGYSLLREQQLIMETKLSKEYM 337
P+ T++ LLE G L++EQ+ + +L+ +Y+
Sbjct: 385 QPKMTIDKLLEYGNMLVQEQENVKRVQLADKYL 417
>gi|116283512|gb|AAH29790.1| Unknown (protein for MGC:35458) [Homo sapiens]
Length = 427
Score = 325 bits (832), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 165/335 (49%), Positives = 225/335 (67%), Gaps = 14/335 (4%)
Query: 10 GVIDPLFAGNFLGKDSDIVFDYRQKVTRS-----FEYLQGDYYIAPVFMASLLCHIVKNY 64
G++D LF + V + V++ F+ G +YIAP FM L+ H+ KN+
Sbjct: 80 GIVDSLFQAPTGDGTHEAVLSSYEYVSQGLKKYDFDNTMGGFYIAPAFMDKLVVHLSKNF 139
Query: 65 IAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRE 124
+ L N+K+PLILGIWGGKGQGKSFQ EL+F MGI P++MSAGELES AGEP KLIR+
Sbjct: 140 MT-LPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQ 198
Query: 125 RYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIG 183
RYR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ+V TLMN++D PT V +
Sbjct: 199 RYREAADMIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADAPTNVQLP 257
Query: 184 QDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGIT 243
+ + + R+PI+ TGNDFST+YAPLIRDGRMEKFYW P +D + + +++ D ++
Sbjct: 258 GMYNKEE-NPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVS 316
Query: 244 KDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPV- 302
+ V IV TFP Q++DF+GALR+R YD + KW+ G+EN+G KL+ R + PV
Sbjct: 317 DESVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVTST-GIENIGKKLVNSR---DGPVT 372
Query: 303 FTPPEKTVEALLESGYSLLREQQLIMETKLSKEYM 337
F P+ TVE LLE G+ L++EQ + +L+ YM
Sbjct: 373 FEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYM 407
>gi|255566442|ref|XP_002524206.1| Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplast
precursor, putative [Ricinus communis]
gi|223536483|gb|EEF38130.1| Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplast
precursor, putative [Ricinus communis]
Length = 473
Score = 324 bits (831), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 158/293 (53%), Positives = 211/293 (72%), Gaps = 7/293 (2%)
Query: 46 YYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIM 105
+YIAP FM L+ HI KN++ L N+K+PLILGIWGGKGQGKSFQ EL+F MGI P++M
Sbjct: 130 FYIAPAFMDKLVVHITKNFMT-LPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 188
Query: 106 SAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQ 164
SAGELES AGEP KLIR+RYR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ
Sbjct: 189 SAGELESGNAGEPAKLIRQRYREAADMIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQ 247
Query: 165 IVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQP 224
+V TLMN++DNPT V + + + + R+PII TGNDFST+YAPLIRDGRMEKFYW P
Sbjct: 248 MVNATLMNIADNPTNVQLPGMYNKEE-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 306
Query: 225 NLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGV 284
ED + + +++ DG+ ++V +V TFP Q++DF+GALR+R YD + KWI + GV
Sbjct: 307 TREDRIGVCTGIFKTDGVAPEDVVKLVDTFPGQSIDFFGALRARVYDDEVRKWIGGV-GV 365
Query: 285 ENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYM 337
E +G L+ ++ P F P+ T+E LLE G L++EQ+ + +L+ +YM
Sbjct: 366 EKIGKSLVNSKEGP--PTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADKYM 416
>gi|357492323|ref|XP_003616450.1| Ribulose-1 5-bisphosphate carboxylase/oxygenase activase [Medicago
truncatula]
gi|355517785|gb|AES99408.1| Ribulose-1 5-bisphosphate carboxylase/oxygenase activase [Medicago
truncatula]
Length = 476
Score = 324 bits (831), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 158/294 (53%), Positives = 212/294 (72%), Gaps = 7/294 (2%)
Query: 46 YYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIM 105
+YIAP FM L+ HI KN++ L N+KVPLILGIWGGKGQGKSFQ EL+F MGI P++M
Sbjct: 132 FYIAPAFMDKLVVHITKNFLT-LPNIKVPLILGIWGGKGQGKSFQAELVFAKMGINPIMM 190
Query: 106 SAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQ 164
SAGELES AGEP KLIR+RYR AS +++ +GKM CL IND+DAG GR G TQ TVNNQ
Sbjct: 191 SAGELESGNAGEPAKLIRQRYREASDIIR-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQ 249
Query: 165 IVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQP 224
+V TLMN++DNPT V + + + + R+PII TGNDFST+YAPLIRDGRMEKFYW P
Sbjct: 250 MVNATLMNIADNPTNVQLPGMYNKEE-NARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 308
Query: 225 NLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGV 284
ED + + ++ D + +++V IV TFP Q++DF+GALR+R YD + KWI + G+
Sbjct: 309 TREDRIGVCKGIFRHDNVPEEDVVKIVDTFPGQSIDFFGALRARVYDDEVRKWIAGV-GI 367
Query: 285 ENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYMK 338
E +G KL+ ++ P F P+ ++E LLE G L++EQ+ + +L+ +Y++
Sbjct: 368 ETIGKKLVNSKEGP--PTFDQPKMSLEKLLEYGNMLVQEQENVKRVQLADKYLE 419
>gi|242072105|ref|XP_002451329.1| hypothetical protein SORBIDRAFT_05g027880 [Sorghum bicolor]
gi|241937172|gb|EES10317.1| hypothetical protein SORBIDRAFT_05g027880 [Sorghum bicolor]
Length = 473
Score = 324 bits (830), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 164/333 (49%), Positives = 225/333 (67%), Gaps = 13/333 (3%)
Query: 10 GVIDPLFAGNFLGKDSDIV----FDYRQKVTRSFEYLQGDYYIAPVFMASLLCHIVKNYI 65
G+ID LF +G + + +DY + R + + G YYIAP FM L+ HI KN++
Sbjct: 98 GMIDSLFQAP-MGDGTHVAVLSSYDYISQGLRQYNTMDG-YYIAPAFMDKLVLHIAKNFM 155
Query: 66 AHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRER 125
L N+KVPLILGIWGGKGQGKSFQ EL+F MGI P++MSAGELES AGEP KLIR+R
Sbjct: 156 T-LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIVMSAGELESGNAGEPAKLIRQR 214
Query: 126 YRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIGQ 184
YR A+ ++ ++GKMSCL IND+DAG GR G TQ TVNNQ+V TLMN++DNPT V +
Sbjct: 215 YREAADLI-SKGKMSCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPG 273
Query: 185 DWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITK 244
+ + D R+PII TGNDFST+YAPLIRDGRM+KFYW P +D + + ++ DG+
Sbjct: 274 MYSKVD-NPRVPIIVTGNDFSTLYAPLIRDGRMDKFYWAPTRDDRIGVCKGIFRTDGVPD 332
Query: 245 DEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVFT 304
+ V +V FP Q++DF+GALR+R YD + +W+ + GVEN+ +L+ ++ P F
Sbjct: 333 EHVVQLVDAFPGQSIDFFGALRARVYDDEVRRWVAET-GVENIARRLVNSKEAP--PTFE 389
Query: 305 PPEKTVEALLESGYSLLREQQLIMETKLSKEYM 337
P T++ L+E G L EQ+ + +L+ +Y+
Sbjct: 390 QPRMTLDKLMEYGRMLEEEQENVKRVQLADKYL 422
>gi|12620881|gb|AAG61120.1| ribulose-1,5-bisphosphate carboxylase/oxygenase activase 1
[Gossypium hirsutum]
Length = 438
Score = 323 bits (829), Expect = 6e-86, Method: Compositional matrix adjust.
Identities = 159/293 (54%), Positives = 209/293 (71%), Gaps = 7/293 (2%)
Query: 46 YYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIM 105
+YIAP FM L+ HI KNY+ L N+KVPLILGIWGGKGQGKSFQ EL+F MGI P++M
Sbjct: 134 FYIAPAFMDKLVVHITKNYMT-LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 192
Query: 106 SAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQ 164
SAGELES AGEP KLIR+RYR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ
Sbjct: 193 SAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQ 251
Query: 165 IVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQP 224
+V TLMN++DNPT V + + + + R+PII TGNDFST+YAPLIRDGRMEKFYW P
Sbjct: 252 MVNATLMNIADNPTNVQLPGMYNKEE-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 310
Query: 225 NLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGV 284
ED + + ++ D + D++ +V TFP Q++DF+GALR+R YD + KWI ++ GV
Sbjct: 311 TREDRIGVCTGIFRTDNVPVDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWIGEV-GV 369
Query: 285 ENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYM 337
++G KL+ R+ P F P T+E LLE G L+ EQ+ + +L+ +Y+
Sbjct: 370 NSVGKKLVNSREGP--PSFEQPTMTIEKLLEYGNMLVAEQENVKRVQLADKYL 420
>gi|255584538|ref|XP_002532996.1| Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplast
precursor, putative [Ricinus communis]
gi|223527225|gb|EEF29388.1| Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplast
precursor, putative [Ricinus communis]
Length = 474
Score = 323 bits (829), Expect = 6e-86, Method: Compositional matrix adjust.
Identities = 156/294 (53%), Positives = 213/294 (72%), Gaps = 7/294 (2%)
Query: 46 YYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIM 105
+YIAP FM ++ HI KN++ +L N+KVPLILGIWGGKGQGKSFQ EL+F MGI P++M
Sbjct: 131 FYIAPAFMDKVVVHITKNFL-NLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 189
Query: 106 SAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQ 164
SAGELES AGEP KLIR+RYR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ
Sbjct: 190 SAGELESGNAGEPAKLIRQRYREAADIIR-KGKMCCLFINDLDAGAGRLGGTTQYTVNNQ 248
Query: 165 IVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQP 224
+V TLMN++DNPT V + + + + R+PII TGNDFST+YAPLIRDGRMEKFYW P
Sbjct: 249 MVNATLMNIADNPTNVQLPGMYNKEE-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 307
Query: 225 NLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGV 284
ED + + ++ D + K+++ +V TFP Q++DF+GA+R+R YD + WI I GV
Sbjct: 308 TREDRIGVCTGIFRTDNVPKEDIVKLVDTFPGQSIDFFGAIRARVYDDEVRAWISTI-GV 366
Query: 285 ENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYMK 338
EN+G +L+ ++ P F P+ T++ LLE G L++EQ+ + +L+ +Y+K
Sbjct: 367 ENVGKRLVNSKEAP--PTFEQPKMTLDKLLEYGSMLVKEQENVKRVQLADKYLK 418
>gi|313574196|dbj|BAJ41041.1| ribulose-1,5-bisphosphate carboxylase/oxygenase activase small
isoform [Hordeum vulgare subsp. vulgare]
Length = 427
Score = 323 bits (828), Expect = 7e-86, Method: Compositional matrix adjust.
Identities = 164/335 (48%), Positives = 225/335 (67%), Gaps = 14/335 (4%)
Query: 10 GVIDPLFAGNFLGKDSDIVFDYRQKVTRS-----FEYLQGDYYIAPVFMASLLCHIVKNY 64
G++D LF + V + V++ F+ G +YIAP FM L+ H+ KN+
Sbjct: 80 GIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIAPAFMDKLVVHLSKNF 139
Query: 65 IAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRE 124
+ L N+K+PLILGIWGGKGQGKSFQ EL+F MGI P++MSAGELES AGEP KLIR+
Sbjct: 140 MT-LPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQ 198
Query: 125 RYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIG 183
RYR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ+V TLMN++D PT V +
Sbjct: 199 RYREAADMIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADAPTNVQLP 257
Query: 184 QDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGIT 243
+ + + R+PI+ TGNDFST+YAPLIRDGRMEKFYW P +D + + +++ D ++
Sbjct: 258 GMYNKEE-NPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVS 316
Query: 244 KDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPV- 302
+ V IV TFP Q++DF+GALR+R YD + KW+ G+EN+G +L+ R + PV
Sbjct: 317 DESVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVGST-GIENIGKRLVNSR---DGPVT 372
Query: 303 FTPPEKTVEALLESGYSLLREQQLIMETKLSKEYM 337
F P+ TVE LLE G+ L++EQ + +L+ YM
Sbjct: 373 FEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYM 407
>gi|326494300|dbj|BAJ90419.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 427
Score = 323 bits (828), Expect = 7e-86, Method: Compositional matrix adjust.
Identities = 164/335 (48%), Positives = 225/335 (67%), Gaps = 14/335 (4%)
Query: 10 GVIDPLFAGNFLGKDSDIVFDYRQKVTRS-----FEYLQGDYYIAPVFMASLLCHIVKNY 64
G++D LF + V + V++ F+ G +YIAP FM L+ H+ KN+
Sbjct: 80 GIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIAPAFMDKLVVHLSKNF 139
Query: 65 IAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRE 124
+ L N+K+PLILGIWGGKGQGKSFQ EL+F MGI P++MSAGELES AGEP KLIR+
Sbjct: 140 MT-LPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQ 198
Query: 125 RYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIG 183
RYR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ+V TLMN++D PT V +
Sbjct: 199 RYREAADMIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADAPTNVQLP 257
Query: 184 QDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGIT 243
+ + + R+PI+ TGNDFST+YAPLIRDGRMEKFYW P +D + + +++ D ++
Sbjct: 258 GMYNKEE-NPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVS 316
Query: 244 KDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPV- 302
+ V IV TFP Q++DF+GALR+R YD + KW+ G+EN+G +L+ R + PV
Sbjct: 317 DESVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVGST-GIENIGKRLVNSR---DGPVT 372
Query: 303 FTPPEKTVEALLESGYSLLREQQLIMETKLSKEYM 337
F P+ TVE LLE G+ L++EQ + +L+ YM
Sbjct: 373 FEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYM 407
>gi|167096|gb|AAA63163.1| ribulose 1,5-bisphosphate carboxylase activase isoform 1 [Hordeum
vulgare subsp. vulgare]
Length = 427
Score = 323 bits (827), Expect = 9e-86, Method: Compositional matrix adjust.
Identities = 164/335 (48%), Positives = 225/335 (67%), Gaps = 14/335 (4%)
Query: 10 GVIDPLFAGNFLGKDSDIVFDYRQKVTRS-----FEYLQGDYYIAPVFMASLLCHIVKNY 64
G++D LF + V + V++ F+ G +YIAP FM L+ H+ KN+
Sbjct: 80 GIVDSLFQAPTGHGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIAPAFMDKLVVHLSKNF 139
Query: 65 IAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRE 124
+ L N+K+PLILGIWGGKGQGKSFQ EL+F MGI P++MSAGELES AGEP KLIR+
Sbjct: 140 MT-LPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQ 198
Query: 125 RYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIG 183
RYR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ+V TLMN++D PT V +
Sbjct: 199 RYREAADMIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADAPTNVQLP 257
Query: 184 QDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGIT 243
+ + + R+PI+ TGNDFST+YAPLIRDGRMEKFYW P +D + + +++ D ++
Sbjct: 258 GMYNKRE-NPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVS 316
Query: 244 KDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPV- 302
+ V IV TFP Q++DF+GALR+R YD + KW+ G+EN+G +L+ R + PV
Sbjct: 317 DESVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVGST-GIENIGKRLVNSR---DGPVT 372
Query: 303 FTPPEKTVEALLESGYSLLREQQLIMETKLSKEYM 337
F P+ TVE LLE G+ L++EQ + +L+ YM
Sbjct: 373 FEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYM 407
>gi|449459892|ref|XP_004147680.1| PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase 1,
chloroplastic-like [Cucumis sativus]
Length = 443
Score = 323 bits (827), Expect = 9e-86, Method: Compositional matrix adjust.
Identities = 161/317 (50%), Positives = 218/317 (68%), Gaps = 20/317 (6%)
Query: 35 VTRSFEYLQ-------------GDYYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWG 81
V S+EYL G YIAP FM L+ HI KN+++ L N+KVPLILG+WG
Sbjct: 115 VMSSYEYLSQGRKSYDGMDNVLGGLYIAPAFMDKLVVHITKNFLS-LPNIKVPLILGLWG 173
Query: 82 GKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSC 141
GKGQGKSFQ EL+F MGI P++MSAGELES AGEP KLIR+RYR A+ +++ +GKMSC
Sbjct: 174 GKGQGKSFQCELVFAKMGITPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMSC 232
Query: 142 LMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFT 200
L IND+DAG GR G TQ TVNNQ+V TLMN++DNPT V + + + + R+PII T
Sbjct: 233 LFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEE-NPRVPIIVT 291
Query: 201 GNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALD 260
GNDFST+YAPLIRDGRMEKFYW P ED + + ++ D + D++ +V TFP Q++D
Sbjct: 292 GNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDNVADDDIVKLVDTFPGQSID 351
Query: 261 FYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSL 320
F+GALR+R YD + KW+ + GV+++G KL+ ++ P F P ++E LLE G L
Sbjct: 352 FFGALRARVYDDEVRKWVTGV-GVQSIGKKLVNSKEPP--PKFEQPTMSLEKLLEYGGML 408
Query: 321 LREQQLIMETKLSKEYM 337
++EQ+ + +L++ Y+
Sbjct: 409 VQEQENVKRVQLAETYL 425
>gi|359481752|ref|XP_002270571.2| PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase 1,
chloroplastic-like [Vitis vinifera]
gi|297740331|emb|CBI30513.3| unnamed protein product [Vitis vinifera]
Length = 474
Score = 323 bits (827), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 157/293 (53%), Positives = 211/293 (72%), Gaps = 7/293 (2%)
Query: 46 YYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIM 105
+YIAP FM L+ HI KN++ L N+KVPLILGIWGGKGQGKSFQ EL+F MGI P++M
Sbjct: 131 FYIAPAFMDKLVVHITKNFMT-LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 189
Query: 106 SAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQ 164
SAGELES AGEP KLIR+RYR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ
Sbjct: 190 SAGELESGNAGEPAKLIRQRYREAADIIR-KGKMCCLFINDLDAGAGRLGGTTQYTVNNQ 248
Query: 165 IVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQP 224
+V TLMN++DNPT V + + + + R+PII TGNDFST+YAPLIRDGRMEKFYW P
Sbjct: 249 MVNATLMNIADNPTNVQLPGMYNKEE-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 307
Query: 225 NLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGV 284
ED + + ++ D I K+++ +V TFP Q++DF+GALR+R YD + KW+ + GV
Sbjct: 308 TREDRIGVCTGIFRSDNIPKEDMVKLVDTFPGQSIDFFGALRARVYDDEVRKWVASV-GV 366
Query: 285 ENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYM 337
E +G KL+ ++ P F P+ T++ LLE G L++EQ+ + +L+ +Y+
Sbjct: 367 EGIGKKLVNSKEGP--PTFEKPKMTLDKLLEYGNMLVQEQENVKRVQLADKYL 417
>gi|169930138|gb|ACB05667.1| chloroplast rubisco activase [Capsicum annuum]
Length = 439
Score = 322 bits (826), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 162/320 (50%), Positives = 217/320 (67%), Gaps = 19/320 (5%)
Query: 32 RQKVTRSFEYL-QG-----------DYYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGI 79
+ S+EYL QG +YIAP FM L+ HI KN++ L N+K+PLILG+
Sbjct: 109 HHAIMNSYEYLSQGLKQYSMDNKLDGFYIAPAFMDKLVVHITKNFL-QLPNIKIPLILGV 167
Query: 80 WGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKM 139
WGGKGQGKSFQ EL+F+ MGI P++MSAGELES AGEP KLIR+RYR A+++++ +G M
Sbjct: 168 WGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIR-KGTM 226
Query: 140 SCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPII 198
CL IND+DAG GR G TQ TVNNQ+V TLMN++DNPT V + + + + R+PII
Sbjct: 227 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQE-NCRVPII 285
Query: 199 FTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQA 258
TGNDFST+YAPLIRDGRMEKFYW P ED + + ++ D + + V IV +FP Q+
Sbjct: 286 VTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDNVPDEAVVKIVDSFPGQS 345
Query: 259 LDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVFTPPEKTVEALLESGY 318
+DF+GALR+R YD + KW+ G+E +G KLL R P F P+ T+E LLE G
Sbjct: 346 IDFFGALRARVYDDEVRKWVSGT-GIEAVGEKLLNSRDGP--PTFEQPKMTLEKLLEYGN 402
Query: 319 SLLREQQLIMETKLSKEYMK 338
L++EQ+ + +L++ Y+K
Sbjct: 403 MLVKEQENVKRVQLAETYLK 422
>gi|100615|pir||C23703 ribulose-bisphosphate carboxylase activase (EC 6.3.4.-) A short
form precursor - barley
gi|167091|gb|AAA62702.1| ribulose 1,5-bisphosphate carboxylase activase [Hordeum vulgare
subsp. vulgare]
Length = 427
Score = 322 bits (826), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 164/335 (48%), Positives = 224/335 (66%), Gaps = 14/335 (4%)
Query: 10 GVIDPLFAGNFLGKDSDIVFDYRQKVTRS-----FEYLQGDYYIAPVFMASLLCHIVKNY 64
G++D LF + V + V++ F+ G +YIAP FM L+ H+ KN+
Sbjct: 80 GIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIAPAFMDKLVVHLSKNF 139
Query: 65 IAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRE 124
+ L N+K+PLILGIWGGKGQGKSFQ EL+F MGI P++MSAGELES AGEP KLIR+
Sbjct: 140 MT-LPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQ 198
Query: 125 RYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIG 183
RYR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ+V TLMN++D PT V +
Sbjct: 199 RYREAADMIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADAPTNVQLP 257
Query: 184 QDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGIT 243
+ + + R+PI+ TGNDFST+YAPLIRDGRMEKFYW P +D + + +++ D +
Sbjct: 258 GMYNKRE-NPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVC 316
Query: 244 KDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPV- 302
+ V IV TFP Q++DF+GALR+R YD + KW+ G+EN+G +L+ R + PV
Sbjct: 317 DESVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVGST-GIENIGKRLVNSR---DGPVT 372
Query: 303 FTPPEKTVEALLESGYSLLREQQLIMETKLSKEYM 337
F P+ TVE LLE G+ L++EQ + +L+ YM
Sbjct: 373 FEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYM 407
>gi|12643998|sp|P10871.2|RCA_SPIOL RecName: Full=Ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic; Short=RA; Short=RuBisCO activase; Flags:
Precursor
gi|4261546|gb|AAD13840.1|S45033_1 ribulosebisphosphate carboxylase/oxygenase activase [Spinacia
oleracea]
Length = 472
Score = 322 bits (826), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 163/338 (48%), Positives = 229/338 (67%), Gaps = 16/338 (4%)
Query: 10 GVIDPLF-----AGNFLGKDSDIVFDYRQKVTRSFEY--LQGDYYIAPVFMASLLCHIVK 62
G++D LF AG + S F+Y + R ++ + GD+YIAP FM L+ HI K
Sbjct: 88 GMVDSLFQAPADAGTHVPIQSS--FEYESQGLRKYDIDNMLGDFYIAPAFMDKLVVHITK 145
Query: 63 NYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLI 122
N++ +L N+K+PLILG+WGGKGQGKSFQ EL+F +GI P++MSAGELES AGEP KLI
Sbjct: 146 NFL-NLPNIKIPLILGVWGGKGQGKSFQCELVFAKLGINPIMMSAGELESGNAGEPAKLI 204
Query: 123 RERYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVS 181
R+RYR A+ ++ +GKM L IND++ G GR G TQ TVNNQ+V TLMN++DNPT V
Sbjct: 205 RQRYREAADLIA-KGKMCALFINDLEPGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQ 263
Query: 182 IGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDG 241
+ + + D R+PII TGNDFST+YAPLIRDGRMEKFYW P ED + + +++ D
Sbjct: 264 LPGMYNKQD-NARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCTGIFKTDK 322
Query: 242 ITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELP 301
+ + V +V FP Q++DF+GALR+R Y + KW++ + GV+N+G KL+ + P
Sbjct: 323 VPAEHVVKLVDAFPGQSIDFFGALRARVYHDEVRKWVNSV-GVDNVGKKLVNSKDGP--P 379
Query: 302 VFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYMKN 339
VF PE T++ L+E G L++EQ+ + +L+ +YM +
Sbjct: 380 VFEQPEMTLQKLMEYGNMLVQEQENVKRVQLADQYMSS 417
>gi|12643756|sp|Q40073.1|RCAA_HORVU RecName: Full=Ribulose bisphosphate carboxylase/oxygenase activase
A, chloroplastic; Short=RA A; Short=RuBisCO activase A;
Flags: Precursor
gi|167097|gb|AAA63164.1| ribulose 1,5-bisphosphate carboxylase activase isoform 2 [Hordeum
vulgare subsp. vulgare]
Length = 464
Score = 322 bits (826), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 164/335 (48%), Positives = 225/335 (67%), Gaps = 14/335 (4%)
Query: 10 GVIDPLFAGNFLGKDSDIVFDYRQKVTRS-----FEYLQGDYYIAPVFMASLLCHIVKNY 64
G++D LF + V + V++ F+ G +YIAP FM L+ H+ KN+
Sbjct: 80 GIVDSLFQAPTGHGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIAPAFMDKLVVHLSKNF 139
Query: 65 IAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRE 124
+ L N+K+PLILGIWGGKGQGKSFQ EL+F MGI P++MSAGELES AGEP KLIR+
Sbjct: 140 MT-LPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQ 198
Query: 125 RYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIG 183
RYR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ+V TLMN++D PT V +
Sbjct: 199 RYREAADMIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADAPTNVQLP 257
Query: 184 QDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGIT 243
+ + + R+PI+ TGNDFST+YAPLIRDGRMEKFYW P +D + + +++ D ++
Sbjct: 258 GMYNKRE-NPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVS 316
Query: 244 KDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPV- 302
+ V IV TFP Q++DF+GALR+R YD + KW+ G+EN+G +L+ R + PV
Sbjct: 317 DESVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVGST-GIENIGKRLVNSR---DGPVT 372
Query: 303 FTPPEKTVEALLESGYSLLREQQLIMETKLSKEYM 337
F P+ TVE LLE G+ L++EQ + +L+ YM
Sbjct: 373 FEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYM 407
>gi|4261547|gb|AAD13841.1|S45033_11 rubisco activase [Spinacia oleracea]
Length = 435
Score = 322 bits (825), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 163/338 (48%), Positives = 229/338 (67%), Gaps = 16/338 (4%)
Query: 10 GVIDPLF-----AGNFLGKDSDIVFDYRQKVTRSFEY--LQGDYYIAPVFMASLLCHIVK 62
G++D LF AG + S F+Y + R ++ + GD+YIAP FM L+ HI K
Sbjct: 88 GMVDSLFQAPADAGTHVPIQSS--FEYESQGLRKYDIDNMLGDFYIAPAFMDKLVVHITK 145
Query: 63 NYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLI 122
N++ +L N+K+PLILG+WGGKGQGKSFQ EL+F +GI P++MSAGELES AGEP KLI
Sbjct: 146 NFL-NLPNIKIPLILGVWGGKGQGKSFQCELVFAKLGINPIMMSAGELESGNAGEPAKLI 204
Query: 123 RERYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVS 181
R+RYR A+ ++ +GKM L IND++ G GR G TQ TVNNQ+V TLMN++DNPT V
Sbjct: 205 RQRYREAADLIA-KGKMCALFINDLEPGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQ 263
Query: 182 IGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDG 241
+ + + D R+PII TGNDFST+YAPLIRDGRMEKFYW P ED + + +++ D
Sbjct: 264 LPGMYNKQD-NARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCTGIFKTDK 322
Query: 242 ITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELP 301
+ + V +V FP Q++DF+GALR+R Y + KW++ + GV+N+G KL+ + P
Sbjct: 323 VPAEHVVKLVDAFPGQSIDFFGALRARVYHDEVRKWVNSV-GVDNVGKKLVNSKDGP--P 379
Query: 302 VFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYMKN 339
VF PE T++ L+E G L++EQ+ + +L+ +YM +
Sbjct: 380 VFEQPEMTLQKLMEYGNMLVQEQENVKRVQLADQYMSS 417
>gi|170129|gb|AAA34038.1| rubisco activase precursor [Spinacia oleracea]
Length = 472
Score = 322 bits (825), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 163/338 (48%), Positives = 229/338 (67%), Gaps = 16/338 (4%)
Query: 10 GVIDPLF-----AGNFLGKDSDIVFDYRQKVTRSFEY--LQGDYYIAPVFMASLLCHIVK 62
G++D LF AG + S F+Y + R ++ + GD YIAP FM L+ HI K
Sbjct: 88 GMVDSLFQAPADAGTHVPIQSS--FEYESQGLRKYDIDNMLGDLYIAPAFMDKLVVHITK 145
Query: 63 NYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLI 122
N++ +L N+K+PLILG+WGGKGQGKSFQ EL+F +GI P++MSAGELES AGEP KLI
Sbjct: 146 NFL-NLPNIKIPLILGVWGGKGQGKSFQCELVFAKLGINPIMMSAGELESGNAGEPAKLI 204
Query: 123 RERYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVS 181
R+RYR A+ ++ +GKM L IND++ G GR G TQ TVNNQ+V TL+N++DNPT V
Sbjct: 205 RQRYREAADLIA-KGKMCALFINDLEPGAGRMGGTTQYTVNNQMVNATLLNIADNPTNVQ 263
Query: 182 IGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDG 241
+ + + D R+PII TGNDFST+YAPLIRDGRMEKFYW P ED + + +++ D
Sbjct: 264 LPGMYNKQD-NARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCTGIFKTDK 322
Query: 242 ITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELP 301
+ + V +V FP Q++DF+GALR+R YD + KW++ + GV+N+G KL+ + P
Sbjct: 323 VPAEHVVKLVDAFPGQSIDFFGALRARVYDDEVRKWVNSV-GVDNVGKKLVNSKDGP--P 379
Query: 302 VFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYMKN 339
VF PE T++ L+E G L++EQ+ + +L+ +YM +
Sbjct: 380 VFEQPEMTLQKLMEYGNMLVQEQENVKRVQLADQYMSS 417
>gi|290766481|gb|ADD60243.1| rubisco activase [Glycine max]
Length = 474
Score = 322 bits (824), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 156/293 (53%), Positives = 212/293 (72%), Gaps = 7/293 (2%)
Query: 46 YYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIM 105
+YIAP FM ++ HI KN++ +L N+KVPLILGIWGGKGQGKSFQ EL+F MGI P++M
Sbjct: 131 FYIAPAFMDKIVVHITKNFL-NLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIVM 189
Query: 106 SAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQ 164
SAGELES AGEP KLIR+RYR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ
Sbjct: 190 SAGELESGNAGEPAKLIRQRYREAADIIR-KGKMCCLFINDLDAGAGRLGGTTQYTVNNQ 248
Query: 165 IVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQP 224
+V TLMN++DNPT V + + + + R+PII TGNDFST+YAPLIRDGRMEKFYW P
Sbjct: 249 MVNATLMNIADNPTNVQLPGMYNKEE-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 307
Query: 225 NLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGV 284
+D + + ++ DG+ K+++ +V TF Q++DF+GALR+R YD + KWI + GV
Sbjct: 308 TRDDRIGVCQGIFRTDGVLKEDIIKLVDTFLGQSIDFFGALRARVYDDEVRKWISGV-GV 366
Query: 285 ENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYM 337
EN+G KL+ ++ P F P+ T+ LLE G L++EQ+ + +L+ +Y+
Sbjct: 367 ENIGKKLVNSKEGP--PTFEQPKMTLSKLLEYGNMLVQEQENVKRVQLADKYL 417
>gi|115334977|gb|ABI94076.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase
activase large protein isoform [Acer rubrum]
Length = 474
Score = 322 bits (824), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 165/333 (49%), Positives = 225/333 (67%), Gaps = 11/333 (3%)
Query: 10 GVIDPLF-AGNFLGKDSDIVFDYRQKVTRSFEYLQGD---YYIAPVFMASLLCHIVKNYI 65
G++D LF A + G ++ Y T YL+ +YIAP FM L+ HI KN++
Sbjct: 91 GLVDSLFQAPSGTGTHYAVMSSYDYISTGLRTYLENSMDGFYIAPAFMDKLVVHITKNFM 150
Query: 66 AHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRER 125
+ L N+K+PLILGIWGGKGQGKSFQ EL+F MGI P++MSAGELES AGEP KLIR+R
Sbjct: 151 S-LPNIKIPLILGIWGGKGQGKSFQCELVFAKMGITPIMMSAGELESGNAGEPAKLIRQR 209
Query: 126 YRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIGQ 184
YR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ+V TLMN++DNPT V +
Sbjct: 210 YREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTSVQLPG 268
Query: 185 DWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITK 244
+ + + R+PII TGNDFST+YAPLIRDGRMEKFYW P ED + + ++ D +
Sbjct: 269 MYNKEE-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRSDNVAD 327
Query: 245 DEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVFT 304
E+ +V TFP Q++DF+GALR+R YD + KWI I GV+++G L+ + P F
Sbjct: 328 GELIKLVDTFPGQSIDFFGALRARVYDDEVRKWISGI-GVDSIGKNLVNSKNGP--PTFE 384
Query: 305 PPEKTVEALLESGYSLLREQQLIMETKLSKEYM 337
P+ T++ LLE G L++EQ+ + +L+ +Y+
Sbjct: 385 QPKMTIDKLLEYGNMLVQEQENVKRVQLADKYL 417
>gi|168047151|ref|XP_001776035.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162672693|gb|EDQ59227.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 445
Score = 322 bits (824), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 165/337 (48%), Positives = 227/337 (67%), Gaps = 14/337 (4%)
Query: 10 GVIDPLFAGNFLGKDSDIV----FDYRQKVTRSFEY--LQGDYYIAPVFMASLLCHIVKN 63
G++D LF G +G + +V +DY R++ + ++ YIAP FM L+ HI KN
Sbjct: 90 GMVDALFQG-AVGLGTQVVTMSSWDYVSTGQRTYNFDNMKDGLYIAPAFMDKLIIHIAKN 148
Query: 64 YIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIR 123
++ +L +KVPLILGIWGGKGQGKSFQ EL+ +GI P++MSAGELES AGEP KLIR
Sbjct: 149 FM-NLPGIKVPLILGIWGGKGQGKSFQCELVMAKLGINPIVMSAGELESGNAGEPAKLIR 207
Query: 124 ERYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSI 182
+RYR A+ V++ +GKM L IND+DAG GR G TQ TVNNQ+V TLMN++D+PT V +
Sbjct: 208 QRYREAADVIK-KGKMCALFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADSPTNVQL 266
Query: 183 GQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGI 242
+ + +I R+PII TGNDFST+YAPLIRDGRMEKFYW P ED + + ++ D +
Sbjct: 267 PGVYNKEEIP-RVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRLDNV 325
Query: 243 TKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPV 302
+ D V +V FP Q++DF+GALR+R YD + KWI GVEN+G L+ + P
Sbjct: 326 SDDNVTKLVDQFPGQSIDFFGALRARVYDDEVRKWIAGT-GVENIGKNLVNSKNGP--PT 382
Query: 303 FTPPEKTVEALLESGYSLLREQQLIMETKLSKEYMKN 339
F P T+E L+E G L++EQQ + +L+++Y+ +
Sbjct: 383 FEKPAMTIEKLMEYGEMLVQEQQNVKRVQLAEQYLSS 419
>gi|100614|pir||B23703 ribulose-bisphosphate carboxylase activase (EC 6.3.4.-) A long form
precursor - barley (fragment)
gi|167089|gb|AAA62701.1| ribulose 1,5-bisphosphate carboxylase activase, partial [Hordeum
vulgare subsp. vulgare]
Length = 426
Score = 321 bits (823), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 164/335 (48%), Positives = 224/335 (66%), Gaps = 14/335 (4%)
Query: 10 GVIDPLFAGNFLGKDSDIVFDYRQKVTRS-----FEYLQGDYYIAPVFMASLLCHIVKNY 64
G++D LF + V + V++ F+ G +YIAP FM L+ H+ KN+
Sbjct: 42 GIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIAPAFMDKLVVHLSKNF 101
Query: 65 IAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRE 124
+ L N+K+PLILGIWGGKGQGKSFQ EL+F MGI P++MSAGELES AGEP KLIR+
Sbjct: 102 MT-LPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQ 160
Query: 125 RYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIG 183
RYR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ+V TLMN++D PT V +
Sbjct: 161 RYREAADMIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADAPTNVQLP 219
Query: 184 QDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGIT 243
+ + + R+PI+ TGNDFST+YAPLIRDGRMEKFYW P +D + + +++ D +
Sbjct: 220 GMYNKRE-NPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVC 278
Query: 244 KDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPV- 302
+ V IV TFP Q++DF+GALR+R YD + KW+ G+EN+G +L+ R + PV
Sbjct: 279 DESVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVGST-GIENIGKRLVNSR---DGPVT 334
Query: 303 FTPPEKTVEALLESGYSLLREQQLIMETKLSKEYM 337
F P+ TVE LLE G+ L++EQ + +L+ YM
Sbjct: 335 FEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYM 369
>gi|410927466|gb|AFV93498.1| chloroplast ribulose bisphosphate carboxylase/oxygenase activase
alpha 2, partial [Gossypium barbadense]
Length = 371
Score = 321 bits (823), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 165/316 (52%), Positives = 217/316 (68%), Gaps = 19/316 (6%)
Query: 35 VTRSFEYL-QG-----------DYYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGG 82
V S+EYL QG +YIAP FM L+ HI KN+++ L N+KVPLILGIWGG
Sbjct: 36 VMSSYEYLSQGLKTYNLDNNMDGFYIAPAFMDKLVVHITKNFMS-LPNIKVPLILGIWGG 94
Query: 83 KGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCL 142
KGQGKSFQ EL+F MGI P++MSAGELES AGEP KLIR+RYR A+ +++ +GKM L
Sbjct: 95 KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCAL 153
Query: 143 MINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTG 201
IND+DAG GR G TQ TVNNQ+V TLMN++DNPT V + + + + R+PII TG
Sbjct: 154 FINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEE-NPRVPIIVTG 212
Query: 202 NDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDF 261
NDFST+YAPLIRDGRMEKFYW P +D + + ++ DGI +++ +V TFP Q++DF
Sbjct: 213 NDFSTLYAPLIRDGRMEKFYWAPTRDDRVGVCKGIFRTDGIPDEDIVKLVDTFPGQSIDF 272
Query: 262 YGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLL 321
+GALR+R YD + KWI D+ GV +G KL+ R P F P+ T+E LLE G L+
Sbjct: 273 FGALRARVYDDEVRKWISDV-GVAGVGKKLVNSRDGP--PTFEQPKMTIEKLLEYGNMLV 329
Query: 322 REQQLIMETKLSKEYM 337
EQ+ + +L+ +Y+
Sbjct: 330 AEQENVKRVQLADKYL 345
>gi|115334975|gb|ABI94075.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase
activase small protein isoform [Acer rubrum]
Length = 437
Score = 321 bits (823), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 165/333 (49%), Positives = 225/333 (67%), Gaps = 11/333 (3%)
Query: 10 GVIDPLF-AGNFLGKDSDIVFDYRQKVTRSFEYLQGD---YYIAPVFMASLLCHIVKNYI 65
G++D LF A + G ++ Y T YL+ +YIAP FM L+ HI KN++
Sbjct: 91 GLVDSLFQAPSGTGTHYAVMSSYDYISTGLRTYLENSMDGFYIAPAFMDKLVVHITKNFM 150
Query: 66 AHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRER 125
+ L N+K+PLILGIWGGKGQGKSFQ EL+F MGI P++MSAGELES AGEP KLIR+R
Sbjct: 151 S-LPNIKIPLILGIWGGKGQGKSFQCELVFAKMGITPIMMSAGELESGNAGEPAKLIRQR 209
Query: 126 YRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIGQ 184
YR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ+V TLMN++DNPT V +
Sbjct: 210 YREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTSVQLPG 268
Query: 185 DWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITK 244
+ + + R+PII TGNDFST+YAPLIRDGRMEKFYW P ED + + ++ D +
Sbjct: 269 MYNKEE-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRSDNVAD 327
Query: 245 DEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVFT 304
E+ +V TFP Q++DF+GALR+R YD + KWI I GV+++G L+ + P F
Sbjct: 328 GELIKLVDTFPGQSIDFFGALRARVYDDEVRKWISGI-GVDSIGKNLVNSKNGP--PTFE 384
Query: 305 PPEKTVEALLESGYSLLREQQLIMETKLSKEYM 337
P+ T++ LLE G L++EQ+ + +L+ +Y+
Sbjct: 385 QPKMTIDKLLEYGNMLVQEQENVKRVQLADKYL 417
>gi|356504250|ref|XP_003520910.1| PREDICTED: LOW QUALITY PROTEIN: ribulose bisphosphate
carboxylase/oxygenase activase 1, chloroplastic-like
[Glycine max]
Length = 474
Score = 321 bits (823), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 156/293 (53%), Positives = 211/293 (72%), Gaps = 7/293 (2%)
Query: 46 YYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIM 105
+YIAP FM ++ HI KN++ +L N+KVPLILGIWGGKGQGKSFQ EL+F MGI P++M
Sbjct: 131 FYIAPAFMDKIVVHITKNFL-NLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIVM 189
Query: 106 SAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQ 164
SAGELES AGEP KLIR+RYR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ
Sbjct: 190 SAGELESGNAGEPAKLIRQRYREAADIIR-KGKMCCLFINDLDAGAGRLGGTTQYTVNNQ 248
Query: 165 IVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQP 224
+V TLMN++DNPT V + + + + R+PII TGNDFST+YAPLIRDGRMEKFYW P
Sbjct: 249 MVNATLMNIADNPTNVQLPGMYNKEE-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 307
Query: 225 NLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGV 284
+D + + ++ DG+ K+++ +V TF Q++DF+GALR R YD + KWI + GV
Sbjct: 308 TRDDRIGVCQGIFRTDGVLKEDIIKLVDTFLGQSIDFFGALRXRVYDDEVRKWISGV-GV 366
Query: 285 ENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYM 337
EN+G KL+ ++ P F P+ T+ LLE G L++EQ+ + +L+ +Y+
Sbjct: 367 ENIGKKLVNSKEGP--PTFEQPKMTLSKLLEYGNMLVQEQENVKRVQLADKYL 417
>gi|168054092|ref|XP_001779467.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669152|gb|EDQ55745.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 410
Score = 321 bits (823), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 165/337 (48%), Positives = 228/337 (67%), Gaps = 14/337 (4%)
Query: 10 GVIDPLFAGNFLGKDSDIV----FDYRQKVTRS--FEYLQGDYYIAPVFMASLLCHIVKN 63
G++D LF G +G + +V +DY R+ F+ ++ YIAP FM L+ HI KN
Sbjct: 55 GMVDALFQG-AVGLGTQVVTMSSWDYVSTGQRTYNFDNMKDGLYIAPAFMDKLIIHIAKN 113
Query: 64 YIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIR 123
++ +L +KVPLILG+WGGKGQGKSFQ EL+ +GI P++MSAGELES AGEP KLIR
Sbjct: 114 FM-NLPGIKVPLILGVWGGKGQGKSFQCELVMSKLGINPIVMSAGELESGNAGEPAKLIR 172
Query: 124 ERYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSI 182
+RYR A+ V++ +GKM L IND+DAG GR G TQ TVNNQ+V TLMN++D+PT V +
Sbjct: 173 QRYREAADVIK-KGKMCALFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADSPTNVQL 231
Query: 183 GQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGI 242
+ + +I R+PII TGNDFST+YAPLIRDGRMEKFYW P ED + + ++ D +
Sbjct: 232 PGVYNKEEIP-RVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRLDNV 290
Query: 243 TKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPV 302
+ D V +V +FP Q++DF+GALR+R YD + KWI GV+N+G KL+ + P
Sbjct: 291 SDDNVTKLVDSFPGQSIDFFGALRARVYDDEVRKWISAT-GVDNIGKKLVNSKDGP--PT 347
Query: 303 FTPPEKTVEALLESGYSLLREQQLIMETKLSKEYMKN 339
F P T+E L+E G L++EQQ + +L+ +Y+ +
Sbjct: 348 FEKPAMTIEKLMEYGNMLVQEQQNVKRVQLADQYLSS 384
>gi|12643757|sp|Q40460.1|RCA1_TOBAC RecName: Full=Ribulose bisphosphate carboxylase/oxygenase activase
1, chloroplastic; Short=RA 1; Short=RuBisCO activase 1;
Flags: Precursor
gi|1006835|gb|AAA78277.1| rubisco activase precursor [Nicotiana tabacum]
Length = 442
Score = 321 bits (823), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 163/320 (50%), Positives = 218/320 (68%), Gaps = 19/320 (5%)
Query: 32 RQKVTRSFEYL-QG-----------DYYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGI 79
V +S+EY+ QG +YIAP FM L+ HI KN++ L N+KVPLILGI
Sbjct: 109 HHAVLQSYEYVSQGLRQYNLDNKLDGFYIAPAFMDKLVVHITKNFL-KLPNIKVPLILGI 167
Query: 80 WGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKM 139
WGGKGQGKSFQ EL+F+ MGI P++MSAGELES AGEP KLIR+RYR A+++++ +G M
Sbjct: 168 WGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIR-KGNM 226
Query: 140 SCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPII 198
CL IND+DAG GR G TQ TVNNQ+V TLMN++DNPT V + + + + R+PII
Sbjct: 227 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQE-NARVPII 285
Query: 199 FTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQA 258
TGNDFST+YAPLIRDGRMEKFYW P ED + + ++ D + ++V IV FP Q+
Sbjct: 286 VTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCTGIFRTDNVPAEDVVKIVDNFPGQS 345
Query: 259 LDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVFTPPEKTVEALLESGY 318
+DF+GALR+R YD + KW+ G+E +G+KLL P F P+ T+E LLE G
Sbjct: 346 IDFFGALRARVYDDEVRKWVSGT-GIEKIGDKLLNSFDGP--PTFEQPKMTIEKLLEYGN 402
Query: 319 SLLREQQLIMETKLSKEYMK 338
L++EQ+ + +L+ +Y+K
Sbjct: 403 MLVQEQENVKRVQLADKYLK 422
>gi|410927512|gb|AFV93502.1| chloroplast ribulose bisphosphate carboxylase/oxygenase activase
alpha 2, partial [Gossypium barbadense]
Length = 344
Score = 321 bits (823), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 165/316 (52%), Positives = 217/316 (68%), Gaps = 19/316 (6%)
Query: 35 VTRSFEYL-QG-----------DYYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGG 82
V S+EYL QG +YIAP FM L+ HI KN+++ L N+KVPLILGIWGG
Sbjct: 16 VMSSYEYLSQGLKTYNLDNNMDGFYIAPAFMDKLVVHITKNFMS-LPNIKVPLILGIWGG 74
Query: 83 KGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCL 142
KGQGKSFQ EL+F MGI P++MSAGELES AGEP KLIR+RYR A+ +++ +GKM L
Sbjct: 75 KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCAL 133
Query: 143 MINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTG 201
IND+DAG GR G TQ TVNNQ+V TLMN++DNPT V + + + + R+PII TG
Sbjct: 134 FINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEE-NPRVPIIVTG 192
Query: 202 NDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDF 261
NDFST+YAPLIRDGRMEKFYW P +D + + ++ DGI +++ +V TFP Q++DF
Sbjct: 193 NDFSTLYAPLIRDGRMEKFYWAPTRDDRVGVCKGIFRTDGIPDEDIVKLVDTFPGQSIDF 252
Query: 262 YGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLL 321
+GALR+R YD + KWI D+ GV +G KL+ R P F P+ T+E LLE G L+
Sbjct: 253 FGALRARVYDDEVRKWISDV-GVAGVGKKLVNSRDGP--PTFEQPKMTIEKLLEYGNMLV 309
Query: 322 REQQLIMETKLSKEYM 337
EQ+ + +L+ +Y+
Sbjct: 310 AEQENVKRVQLADKYL 325
>gi|78100212|gb|ABB20913.1| ribulose-1,5-bisphosphate carboxylase/oxygenase activase alpha 2
[Gossypium hirsutum]
Length = 421
Score = 321 bits (822), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 165/316 (52%), Positives = 217/316 (68%), Gaps = 19/316 (6%)
Query: 35 VTRSFEYL-QG-----------DYYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGG 82
V S+EYL QG +YIAP FM L+ HI KN+++ L N+KVPLILGIWGG
Sbjct: 55 VMSSYEYLSQGLKTYNLDNNMDGFYIAPAFMDKLVVHITKNFMS-LPNIKVPLILGIWGG 113
Query: 83 KGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCL 142
KGQGKSFQ EL+F MGI P++MSAGELES AGEP KLIR+RYR A+ +++ +GKM L
Sbjct: 114 KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCAL 172
Query: 143 MINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTG 201
IND+DAG GR G TQ TVNNQ+V TLMN++DNPT V + + + + R+PII TG
Sbjct: 173 FINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEE-NPRVPIIVTG 231
Query: 202 NDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDF 261
NDFST+YAPLIRDGRMEKFYW P +D + + ++ DGI +++ +V TFP Q++DF
Sbjct: 232 NDFSTLYAPLIRDGRMEKFYWAPTRDDRVGVCKGIFRTDGIPDEDIVKLVDTFPGQSIDF 291
Query: 262 YGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLL 321
+GALR+R YD + KWI D+ GV +G KL+ R P F P+ T+E LLE G L+
Sbjct: 292 FGALRARVYDDEVRKWISDV-GVAGVGKKLVNSRDGP--PTFEQPKMTIEKLLEYGNMLV 348
Query: 322 REQQLIMETKLSKEYM 337
EQ+ + +L+ +Y+
Sbjct: 349 AEQENVKRVQLADKYL 364
>gi|32481061|gb|AAP83927.1| Rubisco activase alpha form precursor [Deschampsia antarctica]
Length = 465
Score = 321 bits (822), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 164/335 (48%), Positives = 223/335 (66%), Gaps = 14/335 (4%)
Query: 10 GVIDPLFAGNFLGKDSDIVFDYRQKVTRS-----FEYLQGDYYIAPVFMASLLCHIVKNY 64
G++D LF + V + V++ F+ G +YIAP FM L+ H+ KN+
Sbjct: 81 GIVDSLFQAPMGDGTHEAVLSSYEYVSQGLKKYDFDNTMGGFYIAPAFMDKLVVHLSKNF 140
Query: 65 IAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRE 124
+ L N+K+PLILGIWGGKGQGKSFQ EL+F MGI P++MSAGELES AGEP KLIR+
Sbjct: 141 MT-LPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQ 199
Query: 125 RYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIG 183
RYR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ+V TLMN++D PT V +
Sbjct: 200 RYREAADMIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADAPTNVQLP 258
Query: 184 QDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGIT 243
+ + + R+PI TGNDFST+YAPLI DGRMEKFYW P ED + + +++ D ++
Sbjct: 259 GMYNKEE-NPRVPIXVTGNDFSTLYAPLIPDGRMEKFYWAPTREDRIGVCKGIFQTDNVS 317
Query: 244 KDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPV- 302
+ V IV TFP Q++DF+GALR+R YD + KW+ G+EN+G +L+ R + PV
Sbjct: 318 DESVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVSST-GIENIGKRLVNSR---DGPVT 373
Query: 303 FTPPEKTVEALLESGYSLLREQQLIMETKLSKEYM 337
F P+ TVE LLE G+ L++EQ + +L+ YM
Sbjct: 374 FEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYM 408
>gi|449503259|ref|XP_004161913.1| PREDICTED: LOW QUALITY PROTEIN: ribulose bisphosphate
carboxylase/oxygenase activase 1, chloroplastic-like
[Cucumis sativus]
Length = 443
Score = 320 bits (821), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 160/317 (50%), Positives = 217/317 (68%), Gaps = 20/317 (6%)
Query: 35 VTRSFEYLQ-------------GDYYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWG 81
V S+EYL G YIAP FM L+ HI KN+++ L N+KVPLILG+WG
Sbjct: 115 VMSSYEYLSQGRKSYDGMDNVLGGLYIAPAFMDKLVVHITKNFLS-LPNIKVPLILGLWG 173
Query: 82 GKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSC 141
GKGQGKSFQ EL+F MGI P++MSAGELES AGEP KLIR+RYR A+ +++ +GKMSC
Sbjct: 174 GKGQGKSFQCELVFAKMGITPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMSC 232
Query: 142 LMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFT 200
L IND+DAG GR G TQ TVNNQ+V TLMN++DNPT V + + + + R+PII T
Sbjct: 233 LFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEE-NPRVPIIVT 291
Query: 201 GNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALD 260
GNDFST+YAPLIRDGRMEKFYW P ED + + ++ D + D++ +V TFP Q++D
Sbjct: 292 GNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDNVADDDIVKLVDTFPGQSID 351
Query: 261 FYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSL 320
F+GALR+R YD + KW+ + GV+++G KL+ ++ P F P ++ LLE G L
Sbjct: 352 FFGALRARVYDDEVRKWVTGV-GVQSIGKKLVNSKEPP--PKFEQPTMSLXKLLEYGGML 408
Query: 321 LREQQLIMETKLSKEYM 337
++EQ+ + +L++ Y+
Sbjct: 409 VQEQENVKRVQLAETYL 425
>gi|7960277|gb|AAF71272.1|AF251264_1 ribulose bisphosphate carboxylase activase B [Triticum aestivum]
Length = 432
Score = 320 bits (821), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 161/334 (48%), Positives = 224/334 (67%), Gaps = 12/334 (3%)
Query: 10 GVIDPLFAGNFLGKDSDIV---FDYRQKVTRSFEY--LQGDYYIAPVFMASLLCHIVKNY 64
G++D LF + + ++Y + R +++ YIAP FM L+ H+ KN+
Sbjct: 84 GIVDSLFQAPMGDGTHEAILSSYEYISQGLRKYDFDNTMDGLYIAPAFMDKLIVHLAKNF 143
Query: 65 IAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRE 124
+ L N+KVPLILGIWGGKGQGKSFQ EL+F MGI P++MSAGELES AGEP KLIR+
Sbjct: 144 MT-LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQ 202
Query: 125 RYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIG 183
RYR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ+V TLMN++D PT V
Sbjct: 203 RYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADAPTNVQFP 261
Query: 184 QDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGIT 243
+ + + R+PII TGNDFST+YAPLIRDGRMEKFYW P ED + + ++ D +
Sbjct: 262 GMYNKEE-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDNVP 320
Query: 244 KDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVF 303
+ V +V TFP Q++DF+GALR+R YD + KW+ +I GVEN+ +L+ R+ P F
Sbjct: 321 DEAVVRLVDTFPGQSIDFFGALRARVYDDEVRKWVGEI-GVENISKRLVNSREGP--PTF 377
Query: 304 TPPEKTVEALLESGYSLLREQQLIMETKLSKEYM 337
P+ T+E L+E G+ L++EQ+ + +L+ +Y+
Sbjct: 378 DQPKMTIEKLMEYGHMLVQEQENVKRVQLADKYL 411
>gi|10720249|sp|O98997.2|RCA_PHAAU RecName: Full=Ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic; Short=RA; Short=RuBisCO activase; Flags:
Precursor
gi|8954287|gb|AAD20019.2| rubisco activase [Vigna radiata]
Length = 439
Score = 320 bits (820), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 161/334 (48%), Positives = 226/334 (67%), Gaps = 14/334 (4%)
Query: 10 GVIDPLF-----AGNFLGKDSDIVFDYRQKVTRSFEYLQGDYYIAPVFMASLLCHIVKNY 64
G++DPLF AG S ++Y R + ++ +YIAP F+ L+ HI KN+
Sbjct: 94 GMVDPLFQAPMDAGTHYAVMSS--YEYLSTGLRQLDNIKDGFYIAPAFLDKLVVHITKNF 151
Query: 65 IAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRE 124
+ L N+KVPLILGIWGGKGQGKSFQ EL+F MGI P++MSAGELES AGEP KLIR+
Sbjct: 152 MT-LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQ 210
Query: 125 RYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIG 183
RYR A+ ++ +GKM L IND+DAG GR G TQ TVNNQ+V TLMN++DNPT V +
Sbjct: 211 RYREAADLIA-KGKMCALFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLP 269
Query: 184 QDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGIT 243
+ + + R+PII TGNDFST+YAPLIRDGRMEKFYW P +D + + ++ DG+
Sbjct: 270 GMYNKEE-NARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRVGVCKGIFRTDGVP 328
Query: 244 KDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVF 303
++++ +V TFP Q++DF+GALR+R YD + KWI + GV+ G KL+ ++ P F
Sbjct: 329 EEDITKLVDTFPGQSIDFFGALRARVYDDEVRKWISGV-GVDATGKKLVNSKEGP--PTF 385
Query: 304 TPPEKTVEALLESGYSLLREQQLIMETKLSKEYM 337
P+ +++ LL+ G L++EQ+ + +L+ +Y+
Sbjct: 386 DQPKMSLDKLLQYGNMLVQEQENVKRVQLADKYL 419
>gi|12643758|sp|Q40565.1|RCA2_TOBAC RecName: Full=Ribulose bisphosphate carboxylase/oxygenase activase
2, chloroplastic; Short=RA 2; Short=RuBisCO activase 2;
Flags: Precursor
gi|19990|emb|CAA78703.1| ribulose bisphosphate carboxylase activase [Nicotiana tabacum]
Length = 439
Score = 320 bits (820), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 164/335 (48%), Positives = 222/335 (66%), Gaps = 12/335 (3%)
Query: 10 GVIDPLFAGNFLGKDSDIVFDYRQKVTRSFEYLQGD-----YYIAPVFMASLLCHIVKNY 64
G++D LF V + V++ D +YIAP FM L+ HI KN+
Sbjct: 94 GMVDSLFQAPTGTGTHHAVLQSYEYVSQGLRQYNMDNTLDGFYIAPSFMDKLVVHITKNF 153
Query: 65 IAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRE 124
+ L N+KVPLILG+WGGKGQGKSFQ EL+F+ MGI P++MSAGELES AGEP KLIR+
Sbjct: 154 L-KLPNIKVPLILGVWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQ 212
Query: 125 RYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIG 183
RYR A+++++ +G + CL IND+DAG GR G TQ TVNNQ+V TLMN++DNPT V +
Sbjct: 213 RYREAAEIIR-KGNICCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLP 271
Query: 184 QDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGIT 243
+ + + R+PII TGNDFST+YAPLIRDGRMEKFYW P ED + + ++ D +
Sbjct: 272 GMYNKQE-NARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDNVP 330
Query: 244 KDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVF 303
++ V IV TFP Q++DF+GALR+R YD + KW+ G+E +G+KLL P F
Sbjct: 331 EEAVIKIVDTFPGQSIDFFGALRARVYDDEVRKWVSGT-GIEAIGDKLLNSFDGP--PTF 387
Query: 304 TPPEKTVEALLESGYSLLREQQLIMETKLSKEYMK 338
P+ TVE LLE G L++EQ+ + +L++ Y+K
Sbjct: 388 EQPKMTVEKLLEYGNMLVQEQENVKRVQLAETYLK 422
>gi|68565781|sp|Q7X999.1|RCA2_LARTR RecName: Full=Ribulose bisphosphate carboxylase/oxygenase activase
2, chloroplastic; Short=RA 2; Short=RuBisCO activase 2;
AltName: Full=RuBisCO activase beta form; Flags:
Precursor
gi|32481067|gb|AAP83930.1| Rubisco activase beta form precursor [Larrea tridentata]
Length = 435
Score = 320 bits (820), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 152/293 (51%), Positives = 211/293 (72%), Gaps = 7/293 (2%)
Query: 46 YYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIM 105
+YIAP FM L+ HI KN+++ L N+K+PLILGIWGGKGQGKSFQ EL+F MGI P++M
Sbjct: 131 FYIAPAFMDKLVVHITKNFLS-LPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 189
Query: 106 SAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQ 164
SAGELES AGEP KLIR+RYR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ
Sbjct: 190 SAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQ 248
Query: 165 IVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQP 224
+V TLMN++DNPT V + + + + R+PII TGNDFST+YAPLIRDGRMEKFYW P
Sbjct: 249 MVNATLMNIADNPTNVQLPGMYNKEE-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 307
Query: 225 NLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGV 284
ED + + ++ D + ++++ +V FP Q++DF+GALR+R YD + KW+ ++ GV
Sbjct: 308 TREDRIGVCKGIFRTDNVPEEDIVKVVDQFPGQSIDFFGALRARVYDDEVRKWVSEV-GV 366
Query: 285 ENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYM 337
+ +G KL+ ++ P F P+ T++ LL+ G L+ EQ+ + +L+ +YM
Sbjct: 367 DTIGKKLVNSKEGP--PTFEQPKMTIDKLLQYGNMLVEEQENVKRVQLADKYM 417
>gi|167999775|ref|XP_001752592.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162696123|gb|EDQ82463.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 477
Score = 320 bits (820), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 165/336 (49%), Positives = 227/336 (67%), Gaps = 12/336 (3%)
Query: 10 GVIDPLFAG-NFLGKDSDIV--FDY--RQKVTRSFEYLQGDYYIAPVFMASLLCHIVKNY 64
G++D LF G +G + ++ +DY + + T S + ++ YIAP FM L+ HI KN+
Sbjct: 89 GLVDALFQGPQGMGTQNAVLSSWDYISQGQRTYSMDNIKDGLYIAPAFMDKLVIHIAKNF 148
Query: 65 IAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRE 124
+ L +KVPLILGIWGGKGQGKSFQ EL+ +GI P++MSAGELES AGEP KLIR+
Sbjct: 149 M-DLPGIKVPLILGIWGGKGQGKSFQCELVMSKLGINPIVMSAGELESGNAGEPAKLIRQ 207
Query: 125 RYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIG 183
RYR A+ +++ +GKM L IND+DAG GR G TQ TVNNQ+V TLMN++DNPT V +
Sbjct: 208 RYREAADIIK-KGKMCALFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLP 266
Query: 184 QDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGIT 243
+ + I R+PII TGNDFST+YAPLIRDGRMEKFYW P ED + + ++ D +
Sbjct: 267 GVYNKETIP-RVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRLDNVH 325
Query: 244 KDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVF 303
D+V +V FP Q++DF+GALR+R YD + KWI + G+EN+G L+ + P F
Sbjct: 326 DDDVVKLVDKFPGQSIDFFGALRARVYDDEVRKWIGKV-GIENIGRNLVNSKDGP--PTF 382
Query: 304 TPPEKTVEALLESGYSLLREQQLIMETKLSKEYMKN 339
P T+E L+E G L++EQQ + +L++EY+ +
Sbjct: 383 QKPAMTIEKLMEYGDMLVQEQQNVKRVQLAEEYLSS 418
>gi|407911678|gb|AFU50387.1| chloroplast ribulose bisphosphate carboxylase/oxygenase activase
small isoform c [Ipomoea batatas]
Length = 439
Score = 320 bits (819), Expect = 7e-85, Method: Compositional matrix adjust.
Identities = 164/335 (48%), Positives = 227/335 (67%), Gaps = 12/335 (3%)
Query: 10 GVIDPLFAGNF-LGKDSDIVFDY----RQKVTRSFEYLQGDYYIAPVFMASLLCHIVKNY 64
G++D LF G ++ Y + + T S + +YIAP FM L+ HI KN+
Sbjct: 91 GLVDTLFQAPMGTGTHHAVLSSYEYVSQGQKTYSLDNKLDGFYIAPAFMDKLVVHITKNF 150
Query: 65 IAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRE 124
+ L N+K+PLILGIWGGKGQGKSFQ EL+F+ MGI P++MSAGELES AGEP KLIR+
Sbjct: 151 L-KLPNIKIPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQ 209
Query: 125 RYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIG 183
RYR A++ ++ +G M CL IND+DAG GR G TQ TVNNQ+V TLMN++DNPT V +
Sbjct: 210 RYREAAENIR-KGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLP 268
Query: 184 QDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGIT 243
+ + + R+PII TGNDFST+YAPLIRDGRMEKFYW P +D + + +++ DG+
Sbjct: 269 GMYNKQE-NARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRVGVCKGIFKTDGVP 327
Query: 244 KDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVF 303
+ V +V TFP Q++DF+GALR+R YD + K++ + GVE + +LL R+ PVF
Sbjct: 328 DEHVVKLVDTFPGQSIDFFGALRARVYDDEVRKFVAGL-GVEKVNERLLNSREGA--PVF 384
Query: 304 TPPEKTVEALLESGYSLLREQQLIMETKLSKEYMK 338
P+ T+E LLE G L++EQ+ + +L+ +Y+K
Sbjct: 385 AQPKMTIEKLLEYGNMLVQEQENVKRVQLADKYLK 419
>gi|302760819|ref|XP_002963832.1| hypothetical protein SELMODRAFT_79425 [Selaginella moellendorffii]
gi|300169100|gb|EFJ35703.1| hypothetical protein SELMODRAFT_79425 [Selaginella moellendorffii]
Length = 451
Score = 320 bits (819), Expect = 8e-85, Method: Compositional matrix adjust.
Identities = 156/293 (53%), Positives = 208/293 (70%), Gaps = 6/293 (2%)
Query: 47 YIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMS 106
YIAP FM L+ HI KN++A L N+KVPLILG+WGGKGQGKSFQ EL+F +GI P+ MS
Sbjct: 74 YIAPAFMDKLVIHISKNFMA-LPNIKVPLILGVWGGKGQGKSFQCELVFSKLGINPIAMS 132
Query: 107 AGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRF-GNTQMTVNNQI 165
AGELES AGEP KLIR+RYR A+ +++ +G+M L IND+DAG GR G TQ TVNNQ+
Sbjct: 133 AGELESGNAGEPAKLIRQRYREAADIIKKKGQMCVLFINDLDAGAGRMGGTTQYTVNNQM 192
Query: 166 VVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPN 225
V TLMN++DNPT V + + + ++ R+PII TGNDFST+YAPLIRDGRMEKFYW P
Sbjct: 193 VNATLMNIADNPTNVQLPGIYTKEELP-RVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT 251
Query: 226 LEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVE 285
ED + + ++ D + +++ +V TFP Q++DF+GALR+R YD + KWI + GVE
Sbjct: 252 REDRIGVCKGIFRSDEVPDEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWITQV-GVE 310
Query: 286 NLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYMK 338
N+G KL+ + P F P T++ LLE G L++EQ+ + L+ +YMK
Sbjct: 311 NIGPKLVNSKDGP--PTFPKPPMTIDKLLEYGNMLVKEQENVKRYHLADKYMK 361
>gi|302780018|ref|XP_002971784.1| hypothetical protein SELMODRAFT_95817 [Selaginella moellendorffii]
gi|300160916|gb|EFJ27533.1| hypothetical protein SELMODRAFT_95817 [Selaginella moellendorffii]
Length = 451
Score = 320 bits (819), Expect = 8e-85, Method: Compositional matrix adjust.
Identities = 156/293 (53%), Positives = 208/293 (70%), Gaps = 6/293 (2%)
Query: 47 YIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMS 106
YIAP FM L+ HI KN++A L N+KVPLILG+WGGKGQGKSFQ EL+F +GI P+ MS
Sbjct: 74 YIAPAFMDKLVIHISKNFMA-LPNIKVPLILGVWGGKGQGKSFQCELVFSKLGINPIAMS 132
Query: 107 AGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRF-GNTQMTVNNQI 165
AGELES AGEP KLIR+RYR A+ +++ +G+M L IND+DAG GR G TQ TVNNQ+
Sbjct: 133 AGELESGNAGEPAKLIRQRYREAADIIKKKGQMCVLFINDLDAGAGRMGGTTQYTVNNQM 192
Query: 166 VVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPN 225
V TLMN++DNPT V + + + ++ R+PII TGNDFST+YAPLIRDGRMEKFYW P
Sbjct: 193 VNATLMNIADNPTNVQLPGIYTKEELP-RVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT 251
Query: 226 LEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVE 285
ED + + ++ D + +++ +V TFP Q++DF+GALR+R YD + KWI + GVE
Sbjct: 252 REDRIGVCKGIFRTDDVPDEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWITQV-GVE 310
Query: 286 NLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYMK 338
N+G KL+ + P F P T++ LLE G L++EQ+ + L+ +YMK
Sbjct: 311 NIGPKLVNSKDGP--PTFPKPPMTIDKLLEYGNMLVQEQENVKRYHLADKYMK 361
>gi|449441384|ref|XP_004138462.1| PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase 1,
chloroplastic-like [Cucumis sativus]
Length = 474
Score = 320 bits (819), Expect = 8e-85, Method: Compositional matrix adjust.
Identities = 164/334 (49%), Positives = 223/334 (66%), Gaps = 12/334 (3%)
Query: 10 GVIDPLFAGNFLGKDSDIV---FDYRQKVTRSFEYLQG--DYYIAPVFMASLLCHIVKNY 64
G++D LF D V ++Y R + + +YIAP FM L+ HI KN+
Sbjct: 90 GMVDTLFQAPSGAGTHDPVLSSYEYLSAGLRQYNFDNNVDGFYIAPAFMDKLVVHISKNF 149
Query: 65 IAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRE 124
+ L N+KVPLILGIWGGKGQGKSFQ EL+F MGI P++MSAGELES AGEP KLIR+
Sbjct: 150 M-KLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQ 208
Query: 125 RYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIG 183
RYR A+ +++ +GKM L IND+DAG GR G TQ TVNNQ+V TLMN++DNPT V +
Sbjct: 209 RYREAADIIK-KGKMCALFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLP 267
Query: 184 QDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGIT 243
+ + + R+PII TGNDFST+YAPLIRDGRMEKFYW P ED + + ++ D I
Sbjct: 268 GMYNKEE-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRSDNIP 326
Query: 244 KDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVF 303
K+++ +V TFP Q++DF+GALR+R YD + W+ + GVEN+ KL+ ++ P F
Sbjct: 327 KEDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWVCSV-GVENIAKKLVNSKEGP--PTF 383
Query: 304 TPPEKTVEALLESGYSLLREQQLIMETKLSKEYM 337
P+ T+E LLE G L++EQ+ + +L+ +Y+
Sbjct: 384 EQPKMTLEKLLEYGNMLVQEQENVKRVQLADKYL 417
>gi|445628|prf||1909374A RuBisCO activase
Length = 383
Score = 319 bits (818), Expect = 9e-85, Method: Compositional matrix adjust.
Identities = 157/294 (53%), Positives = 209/294 (71%), Gaps = 7/294 (2%)
Query: 46 YYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIM 105
+YIAP FM L+ HI KN++ L N+KVPLILGIWGGKGQGKSFQ EL+F+ MGI P++M
Sbjct: 76 FYIAPAFMDKLVVHITKNFL-KLPNIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMM 134
Query: 106 SAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQ 164
SAGELES AGEP KLIR+RYR A+++++ +G M CL IND+DAG GR G TQ TVNNQ
Sbjct: 135 SAGELESGNAGEPAKLIRQRYREAAEIIR-KGNMCCLFINDLDAGAGRMGGTTQYTVNNQ 193
Query: 165 IVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQP 224
+V TLMN++DNPT V + + + + R+PII TGNDFST+YAPLIRDGRMEKFYW P
Sbjct: 194 MVNATLMNIADNPTNVQLPGMYNKQE-NARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 252
Query: 225 NLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGV 284
ED + + ++ D + ++V IV FP Q++DF+GALR+R YD + KW+ G+
Sbjct: 253 TREDRIGVCTGIFRTDNVPAEDVVKIVDNFPGQSIDFFGALRARVYDDEVRKWVSGT-GI 311
Query: 285 ENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYMK 338
E +G+KLL P F P+ T+E LLE G L++EQ+ + +L+ +Y+K
Sbjct: 312 EKIGDKLLNSFDGP--PTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADKYLK 363
>gi|407911676|gb|AFU50386.1| chloroplast ribulose bisphosphate carboxylase/oxygenase activase
small isoform b [Ipomoea batatas]
Length = 439
Score = 319 bits (818), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 164/335 (48%), Positives = 226/335 (67%), Gaps = 12/335 (3%)
Query: 10 GVIDPLFAGNF-LGKDSDIVFDY----RQKVTRSFEYLQGDYYIAPVFMASLLCHIVKNY 64
G++D LF G ++ Y + + T S + +YIAP FM L+ HI KN+
Sbjct: 91 GLVDTLFQAPMGTGTHHAVLSSYEYVSQGQKTYSLDNKLDGFYIAPAFMDKLVVHITKNF 150
Query: 65 IAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRE 124
+ L N+K+PLILGIWGGKGQGKSFQ EL+F+ MGI P++MSAGELES AGEP KLIR+
Sbjct: 151 L-KLPNIKIPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQ 209
Query: 125 RYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIG 183
RYR A++ ++ +G M CL IND+DAG GR G TQ TVNNQ+V TLMN++DNPT V +
Sbjct: 210 RYREAAENIR-KGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLP 268
Query: 184 QDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGIT 243
+ + + R+PII TGNDFST+YAPLIRDGRMEKFYW P +D + + ++ DG+
Sbjct: 269 GMYNKQE-NARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRVGVCKGIFRTDGVP 327
Query: 244 KDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVF 303
+ V +V TFP Q++DF+GALR+R YD + K++ + GVE + +LL R+ PVF
Sbjct: 328 DEHVVKLVDTFPGQSIDFFGALRARVYDDEVRKFVAGL-GVEKVNERLLNSREGA--PVF 384
Query: 304 TPPEKTVEALLESGYSLLREQQLIMETKLSKEYMK 338
P+ T+E LLE G L++EQ+ + +L+ +Y+K
Sbjct: 385 AQPKMTIEKLLEYGNMLVQEQENVKRVQLADKYLK 419
>gi|162312077|gb|ABX84141.1| rubisco activase [Ipomoea batatas]
gi|407911674|gb|AFU50385.1| chloroplast ribulose bisphosphate carboxylase/oxygenase activase
small isoform a [Ipomoea batatas]
Length = 439
Score = 319 bits (818), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 164/335 (48%), Positives = 226/335 (67%), Gaps = 12/335 (3%)
Query: 10 GVIDPLFAGNF-LGKDSDIVFDY----RQKVTRSFEYLQGDYYIAPVFMASLLCHIVKNY 64
G++D LF G ++ Y + + T S + +YIAP FM L+ HI KN+
Sbjct: 91 GLVDTLFQAPMGTGTHHAVLSSYEYVSQGQKTYSLDNKLDGFYIAPAFMDKLVVHITKNF 150
Query: 65 IAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRE 124
+ L N+K+PLILGIWGGKGQGKSFQ EL+F+ MGI P++MSAGELES AGEP KLIR+
Sbjct: 151 L-KLPNIKIPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQ 209
Query: 125 RYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIG 183
RYR A++ ++ +G M CL IND+DAG GR G TQ TVNNQ+V TLMN++DNPT V +
Sbjct: 210 RYREAAENIR-KGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLP 268
Query: 184 QDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGIT 243
+ + + R+PII TGNDFST+YAPLIRDGRMEKFYW P +D + + ++ DG+
Sbjct: 269 GMYNKQE-NARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRVGVCKGIFRTDGVP 327
Query: 244 KDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVF 303
+ V +V TFP Q++DF+GALR+R YD + K++ + GVE + +LL R+ PVF
Sbjct: 328 DEHVVKLVDTFPGQSIDFFGALRARVYDDEVRKFVAGL-GVEKVNERLLNSREGA--PVF 384
Query: 304 TPPEKTVEALLESGYSLLREQQLIMETKLSKEYMK 338
P+ T+E LLE G L++EQ+ + +L+ +Y+K
Sbjct: 385 AQPKMTIEKLLEYGNMLVQEQENVKRVQLADKYLK 419
>gi|407911666|gb|AFU50381.1| chloroplast ribulose bisphosphate carboxylase/oxygenase activase
small isoform [Ipomoea batatas]
Length = 439
Score = 319 bits (817), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 164/335 (48%), Positives = 226/335 (67%), Gaps = 12/335 (3%)
Query: 10 GVIDPLFAGNF-LGKDSDIVFDY----RQKVTRSFEYLQGDYYIAPVFMASLLCHIVKNY 64
G++D LF G ++ Y + + T S + +YIAP FM L+ HI KN+
Sbjct: 91 GLVDTLFQAPMGTGTHHAVLSSYEYVSQGQKTYSLDNKLDGFYIAPAFMDKLVVHITKNF 150
Query: 65 IAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRE 124
+ L N+K+PLILGIWGGKGQGKSFQ EL+F+ MGI P++MSAGELES AGEP KLIR+
Sbjct: 151 L-KLPNIKIPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQ 209
Query: 125 RYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIG 183
RYR A++ ++ +G M CL IND+DAG GR G TQ TVNNQ+V TLMN++DNPT V +
Sbjct: 210 RYREAAENIR-KGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLP 268
Query: 184 QDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGIT 243
+ + + R+PII TGNDFST+YAPLIRDGRMEKFYW P +D + + ++ DG+
Sbjct: 269 GMYNKQE-NARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRVGVCKGIFRTDGVP 327
Query: 244 KDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVF 303
+ V +V TFP Q++DF+GALR+R YD + K++ + GVE + +LL R+ PVF
Sbjct: 328 DEHVVKLVDTFPGQSIDFFGALRARVYDDEVRKFVAGL-GVEKVNERLLNSREGA--PVF 384
Query: 304 TPPEKTVEALLESGYSLLREQQLIMETKLSKEYMK 338
P+ T+E LLE G L++EQ+ + +L+ +Y+K
Sbjct: 385 AQPKMTIEKLLEYGNMLVQEQENVKRVQLADKYLK 419
>gi|307136240|gb|ADN34076.1| ribulose bisphosphate carboxylase/oxygenase activase 1 [Cucumis
melo subsp. melo]
Length = 474
Score = 319 bits (817), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 166/341 (48%), Positives = 221/341 (64%), Gaps = 26/341 (7%)
Query: 10 GVIDPLFAGNFLGKDSDIVFDYRQKVTRSFEYLQGD------------YYIAPVFMASLL 57
G++D LF D V S+EYL +YIAP FM L+
Sbjct: 90 GMVDSLFQAPTGAGTHDPVLS-------SYEYLSAGLRQYNLDNDVEGFYIAPAFMDKLV 142
Query: 58 CHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGE 117
HI KN++ L N+KVPLILGIWGGKGQGKSFQ EL+F MGI P++MSAGELES AGE
Sbjct: 143 VHITKNFM-KLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGE 201
Query: 118 PGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDN 176
P KLIR+RYR A+ +++ +GKM L IND+DAG GR G TQ TVNNQ+V TLMN++DN
Sbjct: 202 PAKLIRQRYREAADIIK-KGKMCALFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADN 260
Query: 177 PTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRM 236
PT V + + + + R+PII TGNDFST+YAPLIRDGRMEKFYW P ED + + +
Sbjct: 261 PTNVQLPGMYNKEE-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGI 319
Query: 237 YEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRK 296
+ D I K+++ +V TFP Q++DF+GALR+R YD + KW + GVEN+ KL+ ++
Sbjct: 320 FRSDNIPKEDIIKLVDTFPGQSIDFFGALRARVYDDEVRKWASSV-GVENIAKKLVNSKE 378
Query: 297 DKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYM 337
P P+ T+E LLE G L++EQ+ + +L+ +Y+
Sbjct: 379 GP--PTLEQPKMTLEKLLEYGNMLVQEQENVKRVQLADKYL 417
>gi|410927436|gb|AFV93497.1| chloroplast ribulose bisphosphate carboxylase/oxygenase activase
alpha1, partial [Gossypium barbadense]
Length = 371
Score = 319 bits (817), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 156/293 (53%), Positives = 211/293 (72%), Gaps = 7/293 (2%)
Query: 46 YYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIM 105
+YIAP FM L+ HI KN+++ L N+KVPLILGIWGGKGQGKSFQ EL+F MGI P++M
Sbjct: 59 FYIAPAFMDKLVVHISKNFMS-LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 117
Query: 106 SAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQ 164
SAGELES AGEP KLIR+RYR A+ +++ +GKM L IND+DAG GR G TQ TVNNQ
Sbjct: 118 SAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCALFINDLDAGAGRMGGTTQYTVNNQ 176
Query: 165 IVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQP 224
+V TLMN++DNPT V + + + + R+PII TGNDFST+YAPLIRDGRMEKFYW P
Sbjct: 177 MVNATLMNIADNPTNVQLPGMYNKEE-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 235
Query: 225 NLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGV 284
+D + + ++ DG+ +++ +V TFP Q++DF+GALR+R YD + KWI ++ GV
Sbjct: 236 TRDDRIGVCKGIFRTDGVRDEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEV-GV 294
Query: 285 ENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYM 337
++G KL+ R+ P F P+ T+E LLE G L+ EQ+ + +L+ +Y+
Sbjct: 295 ASVGKKLVNSREGP--PTFEQPKMTIEKLLEYGNMLVAEQENVKRVQLADKYL 345
>gi|312281705|dbj|BAJ33718.1| unnamed protein product [Thellungiella halophila]
Length = 437
Score = 319 bits (817), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 156/293 (53%), Positives = 210/293 (71%), Gaps = 7/293 (2%)
Query: 46 YYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIM 105
+YIAP FM L+ HI KN++ L N+KVPLILGIWGGKGQGKSFQ EL+ MGI P++M
Sbjct: 131 FYIAPAFMDKLVVHITKNFLT-LPNIKVPLILGIWGGKGQGKSFQCELVMAKMGINPIMM 189
Query: 106 SAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQ 164
SAGELES AGEP KLIR+RYR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ
Sbjct: 190 SAGELESGNAGEPAKLIRQRYREAADMIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQ 248
Query: 165 IVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQP 224
+V TLMN++DNPT V + + + D R+PII TGNDFST+YAPLIRDGRMEKFYW P
Sbjct: 249 MVNATLMNIADNPTNVQLPGMYNKED-NARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 307
Query: 225 NLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGV 284
ED + + ++ D I +++ ++V FP Q++DF+GALR+R YD + K+++ + GV
Sbjct: 308 TREDRIGVCKGIFRTDKINDEDIVTLVDQFPGQSIDFFGALRARVYDDEVRKFVEGL-GV 366
Query: 285 ENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYM 337
E +G +L+ R+ PVF PE T+E L+E G L+ EQ+ + +L+ +Y+
Sbjct: 367 EKIGKRLVNSREGP--PVFEQPEMTLEKLMEYGNMLVMEQENVKRVQLADQYL 417
>gi|12620883|gb|AAG61121.1|AF329935_1 ribulose-1,5-bisphosphate carboxylase/oxygenase activase 2
[Gossypium hirsutum]
Length = 435
Score = 319 bits (817), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 156/293 (53%), Positives = 211/293 (72%), Gaps = 7/293 (2%)
Query: 46 YYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIM 105
+YIAP FM L+ HI KN+++ L N+KVPLILGIWGGKGQGKSFQ EL+F MGI P++M
Sbjct: 92 FYIAPAFMDKLVVHISKNFMS-LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 150
Query: 106 SAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQ 164
SAGELES AGEP KLIR+RYR A+ +++ +GKM L IND+DAG GR G TQ TVNNQ
Sbjct: 151 SAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCALFINDLDAGAGRMGGTTQYTVNNQ 209
Query: 165 IVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQP 224
+V TLMN++DNPT V + + + + R+PII TGNDFST+YAPLIRDGRMEKFYW P
Sbjct: 210 MVNATLMNIADNPTNVQLPGMYNKEE-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 268
Query: 225 NLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGV 284
+D + + ++ DG+ +++ +V TFP Q++DF+GALR+R YD + KWI ++ GV
Sbjct: 269 TRDDRIGVCKGIFRTDGVRDEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEV-GV 327
Query: 285 ENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYM 337
++G KL+ R+ P F P+ T+E LLE G L+ EQ+ + +L+ +Y+
Sbjct: 328 ASVGKKLVNSREGP--PTFEQPKMTIEKLLEYGNMLVAEQENVKRVQLADKYL 378
>gi|68565782|sp|Q7X9A0.1|RCA1_LARTR RecName: Full=Ribulose bisphosphate carboxylase/oxygenase activase
1, chloroplastic; Short=RA 1; Short=RuBisCO activase 1;
AltName: Full=RuBisCO activase alpha form; Flags:
Precursor
gi|32481065|gb|AAP83929.1| Rubisco activase alpha form precursor [Larrea tridentata]
Length = 476
Score = 318 bits (816), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 153/293 (52%), Positives = 210/293 (71%), Gaps = 7/293 (2%)
Query: 46 YYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIM 105
+YIAP FM L+ HI KN+++ L N+K+PLILGIWGGKGQGKSFQ EL+F MGI P++M
Sbjct: 131 FYIAPAFMDKLVVHITKNFLS-LPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 189
Query: 106 SAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQ 164
SAGELES AGEP KLIR+RYR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ
Sbjct: 190 SAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQ 248
Query: 165 IVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQP 224
+V TLMN++DNPT V + + + + R+PII TGNDFST+YAPLIRDGRMEKFYW P
Sbjct: 249 MVNATLMNIADNPTNVQLPGMYNKEE-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 307
Query: 225 NLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGV 284
ED + + ++ D + D++ +V TFP Q++DF+GALR+R Y + KW+ ++ GV
Sbjct: 308 TREDRIGVCKGIFRTDNVADDDIVKLVDTFPGQSIDFFGALRARVYHDEVRKWVSEV-GV 366
Query: 285 ENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYM 337
+ +G KL+ ++ P F P+ T++ LL G L++EQ+ + +L+ +YM
Sbjct: 367 DTIGKKLVNSKEGP--PSFEQPKMTIDKLLGYGGMLVQEQENVKRVQLADKYM 417
>gi|410927500|gb|AFV93501.1| chloroplast ribulose bisphosphate carboxylase/oxygenase activase
alpha1, partial [Gossypium barbadense]
Length = 344
Score = 318 bits (816), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 156/293 (53%), Positives = 211/293 (72%), Gaps = 7/293 (2%)
Query: 46 YYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIM 105
+YIAP FM L+ HI KN+++ L N+KVPLILGIWGGKGQGKSFQ EL+F MGI P++M
Sbjct: 39 FYIAPAFMDKLVVHISKNFMS-LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 97
Query: 106 SAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQ 164
SAGELES AGEP KLIR+RYR A+ +++ +GKM L IND+DAG GR G TQ TVNNQ
Sbjct: 98 SAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCALFINDLDAGAGRMGGTTQYTVNNQ 156
Query: 165 IVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQP 224
+V TLMN++DNPT V + + + + R+PII TGNDFST+YAPLIRDGRMEKFYW P
Sbjct: 157 MVNATLMNIADNPTNVQLPGMYNKEE-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 215
Query: 225 NLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGV 284
+D + + ++ DG+ +++ +V TFP Q++DF+GALR+R YD + KWI ++ GV
Sbjct: 216 TRDDRIGVCKGIFRTDGVRDEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEV-GV 274
Query: 285 ENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYM 337
++G KL+ R+ P F P+ T+E LLE G L+ EQ+ + +L+ +Y+
Sbjct: 275 ASVGKKLVNSREGP--PTFEQPKMTIEKLLEYGNMLVAEQENVKRVQLADKYL 325
>gi|363806750|ref|NP_001242531.1| ribulose bisphosphate carboxylase/oxygenase activase 1,
chloroplastic-like [Glycine max]
gi|290766483|gb|ADD60244.1| rubisco activase [Glycine max]
Length = 478
Score = 318 bits (815), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 160/316 (50%), Positives = 214/316 (67%), Gaps = 19/316 (6%)
Query: 35 VTRSFEYLQ------------GDYYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGG 82
V SFEYL +YIAP FM L+ HI KN++ L N+KVPLILGIWGG
Sbjct: 112 VMSSFEYLSTGLKQYNLDNNMDGFYIAPAFMDKLVAHITKNFMT-LPNIKVPLILGIWGG 170
Query: 83 KGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCL 142
KGQGKSFQ EL+F MGI P++M AGELES AGEP KLIR+RYR A+ ++ ++GKM CL
Sbjct: 171 KGQGKSFQCELVFAKMGINPIMMGAGELESGNAGEPAKLIRQRYREAADII-SKGKMCCL 229
Query: 143 MINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTG 201
IND+D G GR G TQ TVNNQ+V TLMN++DNPT V + + + + R+PII TG
Sbjct: 230 FINDLDVGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQE-NPRVPIIVTG 288
Query: 202 NDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDF 261
NDFST+YAPLIRDGRMEKFYW P +D + + ++ D + +DE+ +V TFP Q++DF
Sbjct: 289 NDFSTLYAPLIRDGRMEKFYWAPTRDDRVGVCKGIFRTDNVPEDEIVKLVDTFPGQSIDF 348
Query: 262 YGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLL 321
+GALR+R YD + KWI + GV+ +G KL+ ++ P F P+ T+ LLE G L+
Sbjct: 349 FGALRARVYDDEVRKWISGV-GVDLIGKKLVNSKEGP--PTFDQPKMTLSKLLEYGNMLV 405
Query: 322 REQQLIMETKLSKEYM 337
+EQ+ + +L+ +Y+
Sbjct: 406 QEQENVKRVQLADKYL 421
>gi|266893|sp|Q01587.1|RCA_CUCSA RecName: Full=Ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic; Short=RA; Short=RuBisCO activase; Flags:
Precursor
gi|18284|emb|CAA47906.1| rubisco activase [Cucumis sativus]
Length = 413
Score = 318 bits (815), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 165/329 (50%), Positives = 218/329 (66%), Gaps = 12/329 (3%)
Query: 10 GVIDPLFAGNFLGKDSDIV---FDYRQKVTRSFEYLQG--DYYIAPVFMASLLCHIVKNY 64
G+ DPLF + V ++Y R + Y +YIAP FM L HIVKN+
Sbjct: 87 GLADPLFQAPMGTGTHNAVLSSYEYISAGLRDYSYDNNVDGFYIAPAFMDKLTVHIVKNF 146
Query: 65 IAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRE 124
+ L N+KVPLILG+WGGKGQGKSFQ EL+F MGI P++MSAGELES AGEP KLIR+
Sbjct: 147 LT-LPNIKVPLILGVWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQ 205
Query: 125 RYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIG 183
RYR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ+V TLMN++DNPT V +
Sbjct: 206 RYREAADIIK-KGKMCCLFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLP 264
Query: 184 QDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGIT 243
+ + + R+PII TGNDFST+YAPLIRDGRM+KFYW P ED + I ++ DG+
Sbjct: 265 GMYNKEE-NPRVPIIVTGNDFSTLYAPLIRDGRMDKFYWAPTREDRIGICTGIFRTDGVP 323
Query: 244 KDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVF 303
+++ +V TFP Q++DF+GALR+R YD + KW + GVE +G L+ ++ P F
Sbjct: 324 FEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWAVGV-GVERIGRNLVNSKESP--PTF 380
Query: 304 TPPEKTVEALLESGYSLLREQQLIMETKL 332
P+ T+E LLE G L+ EQ+ + KL
Sbjct: 381 DQPKMTIEKLLEYGNMLVMEQENVKRVKL 409
>gi|337263422|gb|AEI69347.1| chloroplast rubisco activase [Ophiopogon japonicus]
Length = 435
Score = 318 bits (815), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 160/334 (47%), Positives = 222/334 (66%), Gaps = 12/334 (3%)
Query: 10 GVIDPLFAGNFLGKDSDIVFDYRQKVTRSF-----EYLQGDYYIAPVFMASLLCHIVKNY 64
G++DPLF + V + + +++ E +YIAP FM L+ HI KNY
Sbjct: 90 GLVDPLFQAPMGDGTHEAVLNSYEYISQGLRDYGMENKMDGFYIAPEFMDKLVVHITKNY 149
Query: 65 IAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRE 124
+ L N+KVPLILGIWGGKGQGK+FQ EL+F+ MGI P++MSAGELES AGEP KLIR+
Sbjct: 150 M-DLPNIKVPLILGIWGGKGQGKTFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQ 208
Query: 125 RYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIG 183
RYR A+ ++ +GKM CL IND+DAG GR G TQ TVNNQ+V TLMN++DNPT V +
Sbjct: 209 RYREAADIIA-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLP 267
Query: 184 QDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGIT 243
+ + + R+PII TGNDFST+YAPLIRDGRMEKFYW P D + + ++ D +
Sbjct: 268 GMYNKQE-NARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRSDRIGVCTGIFMTDNVA 326
Query: 244 KDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVF 303
++ +V FP Q++DF+GALR+R YD + KWI DI GV+ +G +L+ + P F
Sbjct: 327 VQDIVKLVDAFPGQSIDFFGALRARVYDDEVRKWISDI-GVDKVGKRLVNSAEGA--PTF 383
Query: 304 TPPEKTVEALLESGYSLLREQQLIMETKLSKEYM 337
P+ T+E L++ G L++EQ+ + +L+ +Y+
Sbjct: 384 EQPKMTLEKLMDYGNMLVQEQENVKRVQLADKYL 417
>gi|357155667|ref|XP_003577196.1| PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase B,
chloroplastic-like [Brachypodium distachyon]
Length = 440
Score = 318 bits (814), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 159/334 (47%), Positives = 222/334 (66%), Gaps = 12/334 (3%)
Query: 10 GVIDPLFAGNFLGKDSDIVFDYRQKVTRS-----FEYLQGDYYIAPVFMASLLCHIVKNY 64
G++D LF + V + +++ F+ YIAP FM L+ H+ KN+
Sbjct: 90 GIVDALFQAPMGDGTHEAVLSSYEYISQGLRQYDFDNTMDGLYIAPAFMDKLVVHLAKNF 149
Query: 65 IAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRE 124
+ L N+KVPLILGIWGGKGQGKSFQ EL+F MGI P++MSAGELES AGEP KLIR+
Sbjct: 150 MT-LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQ 208
Query: 125 RYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIG 183
RYR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ+V TLMN++D PT V +
Sbjct: 209 RYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADAPTNVQLP 267
Query: 184 QDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGIT 243
+ + + R+PII TGNDFST+YAPLIRDGRMEKFYW P ED + + ++ DG+
Sbjct: 268 GMYNKEE-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDGVP 326
Query: 244 KDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVF 303
+ V +V FP Q++DF+GALR+R YD + KW+ +I GVEN+ +L+ ++ P F
Sbjct: 327 DEAVVRLVDMFPGQSIDFFGALRARVYDDEVRKWVGEI-GVENISKRLVNSKEGP--PKF 383
Query: 304 TPPEKTVEALLESGYSLLREQQLIMETKLSKEYM 337
P+ T+ L+E G+ L++EQ+ + +L+ +Y+
Sbjct: 384 EQPKMTISKLMEYGHMLVQEQENVKRVQLADKYL 417
>gi|224284512|gb|ACN39989.1| unknown [Picea sitchensis]
Length = 368
Score = 318 bits (814), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 164/329 (49%), Positives = 220/329 (66%), Gaps = 12/329 (3%)
Query: 10 GVIDPLFAGNFLGKDSDIV---FDYRQKVTRSFEY--LQGDYYIAPVFMASLLCHIVKNY 64
G +D LF ++V +DY R++++ YYIAP FM LL HI KN+
Sbjct: 8 GKVDSLFQAPMGSGTHNVVMSTYDYISTAQRTYDFDNTMDGYYIAPSFMDKLLVHISKNF 67
Query: 65 IAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRE 124
+ +L N+KVPLILGIWGGKGQGKSFQ EL+F +GI P++MSAGELES AGEP KL+R+
Sbjct: 68 M-NLPNIKVPLILGIWGGKGQGKSFQCELVFAKLGINPIMMSAGELESGDAGEPAKLLRK 126
Query: 125 RYRTASQVVQNQGKMSCLMINDIDAGLGRFGNT-QMTVNNQIVVGTLMNLSDNPTRVSIG 183
RYR AS +V+ +GKM L IND+DAG GR G+T Q TVNNQ+V TLMN++DNPT V +
Sbjct: 127 RYREASDIVK-KGKMCVLFINDLDAGAGRMGSTTQYTVNNQMVNATLMNIADNPTNVQLP 185
Query: 184 QDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGIT 243
+ + D R+PI+ TGNDFST+YAPLIRDGRMEKFYW P +D + + ++ D +
Sbjct: 186 GMYNKQD-NPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCQGIFRADNVH 244
Query: 244 KDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVF 303
D+V +V TFP Q++DF+GALR+R YD + KW+ G++N+G KL+ ++ P F
Sbjct: 245 PDDVVRLVDTFPGQSIDFFGALRARVYDDEVRKWVAGT-GIQNIGKKLINSKEGP--PTF 301
Query: 304 TPPEKTVEALLESGYSLLREQQLIMETKL 332
P T+E LLE G L+ EQ + +L
Sbjct: 302 EKPAMTIEKLLEYGNMLVGEQDNVKRVQL 330
>gi|13430338|gb|AAK25801.1|AF338240_1 rubisco activase [Zantedeschia aethiopica]
Length = 435
Score = 318 bits (814), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 164/334 (49%), Positives = 226/334 (67%), Gaps = 12/334 (3%)
Query: 10 GVIDPLFAGNFLGKDSDIV---FDYRQKVTRSF--EYLQGDYYIAPVFMASLLCHIVKNY 64
G++D LF + V ++Y RSF + YIAP FM L+ HI KN+
Sbjct: 88 GMVDSLFQAPMGDGTHNPVLSSYEYISTGLRSFNLDNTVNGLYIAPAFMDKLVVHITKNF 147
Query: 65 IAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRE 124
+ +L N+K+PLILGIWGGKGQGKSFQ EL+F MGI P++MSAGELES AGEP KLIR+
Sbjct: 148 M-NLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQ 206
Query: 125 RYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIG 183
RYR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ+V TLMN++DNPT V +
Sbjct: 207 RYREAADIIR-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLP 265
Query: 184 QDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGIT 243
+ + + R+PII TGNDFST+YAPLIRDGRMEKFYW P +D + + ++ D +
Sbjct: 266 GMYNKQE-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRVGVCTGIFRSDNVP 324
Query: 244 KDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVF 303
K++V +V TFP Q++DF+GALR+R YD + KWI +I GV+ +G +L+ + P F
Sbjct: 325 KEDVIKLVDTFPGQSIDFFGALRARVYDDEVRKWIAEI-GVDGVGKRLVNSLEGP--PTF 381
Query: 304 TPPEKTVEALLESGYSLLREQQLIMETKLSKEYM 337
P+ T++ LLE G L++EQ+ + +L+ +Y+
Sbjct: 382 AQPKMTLDKLLEYGNMLVQEQENVKRVQLADKYL 415
>gi|255635315|gb|ACU18011.1| unknown [Glycine max]
gi|290766487|gb|ADD60246.1| beta-form rubisco activase [Glycine max]
gi|290766491|gb|ADD60248.1| beta-form rubisco activase [Glycine max]
Length = 443
Score = 317 bits (813), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 166/333 (49%), Positives = 224/333 (67%), Gaps = 11/333 (3%)
Query: 10 GVIDPLF-AGNFLGKDSDIVFDYRQKVTRSFEYLQGD---YYIAPVFMASLLCHIVKNYI 65
G++D LF A G ++ Y T +YL +YIAP FM L+ HI KN++
Sbjct: 96 GLVDSLFQAPQDAGTHYAVMSSYEYLSTGLRQYLDNKMDGFYIAPAFMDKLVVHISKNFM 155
Query: 66 AHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRER 125
L N+KVPLILGIWGGKGQGKSFQ EL+F MGI P++MSAGELES AGEP KLIR+R
Sbjct: 156 T-LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQR 214
Query: 126 YRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIGQ 184
YR A+ +++ +GKM L IND+DAG GR G TQ TVNNQ+V TLMN++DNPT V +
Sbjct: 215 YREAADMIK-KGKMCALFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPG 273
Query: 185 DWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITK 244
+ + + R+PII TGNDFST+YAPLIRDGRMEKFYW P ED + + ++ DGI +
Sbjct: 274 MYNKEE-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCTGIFRTDGIPE 332
Query: 245 DEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVFT 304
++ +V TFP Q++DF+GALR+R YD + KWI + GV+++G KL+ + P F
Sbjct: 333 QDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGV-GVDSVGKKLVNSKDGP--PTFE 389
Query: 305 PPEKTVEALLESGYSLLREQQLIMETKLSKEYM 337
P+ T+E LL G L++EQ+ + +L+ +Y+
Sbjct: 390 QPKMTLEKLLLYGNMLVQEQENVKRVQLADKYL 422
>gi|356569334|ref|XP_003552857.1| PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic-like [Glycine max]
Length = 431
Score = 317 bits (813), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 166/333 (49%), Positives = 224/333 (67%), Gaps = 11/333 (3%)
Query: 10 GVIDPLF-AGNFLGKDSDIVFDYRQKVTRSFEYLQGD---YYIAPVFMASLLCHIVKNYI 65
G++D LF A G ++ Y T +YL +YIAP FM L+ HI KN++
Sbjct: 84 GLVDSLFQAPQDAGTHYAVMSSYEYLSTGLRQYLDNKMDGFYIAPAFMDKLVVHISKNFM 143
Query: 66 AHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRER 125
L N+KVPLILGIWGGKGQGKSFQ EL+F MGI P++MSAGELES AGEP KLIR+R
Sbjct: 144 T-LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQR 202
Query: 126 YRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIGQ 184
YR A+ +++ +GKM L IND+DAG GR G TQ TVNNQ+V TLMN++DNPT V +
Sbjct: 203 YREAADMIK-KGKMCALFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPG 261
Query: 185 DWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITK 244
+ + + R+PII TGNDFST+YAPLIRDGRMEKFYW P ED + + ++ DGI +
Sbjct: 262 MYNKEE-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCTGIFRTDGIPE 320
Query: 245 DEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVFT 304
++ +V TFP Q++DF+GALR+R YD + KWI + GV+++G KL+ + P F
Sbjct: 321 QDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGV-GVDSVGKKLVNSKDGP--PTFE 377
Query: 305 PPEKTVEALLESGYSLLREQQLIMETKLSKEYM 337
P+ T+E LL G L++EQ+ + +L+ +Y+
Sbjct: 378 QPKMTLEKLLLYGNMLVQEQENVKRVQLADKYL 410
>gi|13430336|gb|AAK25800.1|AF338239_1 rubisco activase [Zantedeschia aethiopica]
Length = 426
Score = 317 bits (813), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 164/334 (49%), Positives = 226/334 (67%), Gaps = 12/334 (3%)
Query: 10 GVIDPLFAGNFLGKDSDIV---FDYRQKVTRSF--EYLQGDYYIAPVFMASLLCHIVKNY 64
G++D LF + V ++Y RSF + YIAP FM L+ HI KN+
Sbjct: 42 GMVDSLFQAPMGDGTHNPVLSSYEYISTGLRSFNLDNTVNGLYIAPAFMDKLVVHITKNF 101
Query: 65 IAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRE 124
+ +L N+K+PLILGIWGGKGQGKSFQ EL+F MGI P++MSAGELES AGEP KLIR+
Sbjct: 102 M-NLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQ 160
Query: 125 RYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIG 183
RYR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ+V TLMN++DNPT V +
Sbjct: 161 RYREAADIIR-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLP 219
Query: 184 QDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGIT 243
+ + + R+PII TGNDFST+YAPLIRDGRMEKFYW P +D + + ++ D +
Sbjct: 220 GMYNKQE-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRVGVCTGIFRSDNVP 278
Query: 244 KDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVF 303
K++V +V TFP Q++DF+GALR+R YD + KWI +I GV+ +G +L+ + P F
Sbjct: 279 KEDVIKLVDTFPGQSIDFFGALRARVYDDEVRKWIAEI-GVDGVGKRLVNSLEGP--PTF 335
Query: 304 TPPEKTVEALLESGYSLLREQQLIMETKLSKEYM 337
P+ T++ LLE G L++EQ+ + +L+ +Y+
Sbjct: 336 AQPKMTLDKLLEYGNMLVQEQENVKRVQLADKYL 369
>gi|23308421|gb|AAN18180.1| At2g39730/T5I7.3 [Arabidopsis thaliana]
Length = 474
Score = 317 bits (813), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 155/293 (52%), Positives = 211/293 (72%), Gaps = 7/293 (2%)
Query: 46 YYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIM 105
+YIAP FM L+ HI KN++ L N+KVPLILGIWGGKGQGKSFQ EL+ MGI P++M
Sbjct: 131 FYIAPAFMDKLVVHITKNFLT-LPNIKVPLILGIWGGKGQGKSFQCELVMAKMGINPIMM 189
Query: 106 SAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQ 164
SAGELES AGEP KLIR+RYR A+ +++ +GKM CL+IND+DAG GR G TQ TVNNQ
Sbjct: 190 SAGELESGNAGEPAKLIRQRYREAADLIK-KGKMCCLLINDLDAGAGRMGGTTQYTVNNQ 248
Query: 165 IVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQP 224
+V TLMN++DNPT V + + + + R+PII TGNDFST+YAPLIRDGRMEKFYW P
Sbjct: 249 MVNATLMNIADNPTNVQLPGMYNKEE-NARVPIICTGNDFSTLYAPLIRDGRMEKFYWAP 307
Query: 225 NLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGV 284
ED + + ++ D I +++ ++V FP+Q++DF+GALR+R YD + K+++ + GV
Sbjct: 308 TREDRIGVCKGIFRTDKIKDEDIVTLVDQFPDQSIDFFGALRARVYDDEVRKFVESL-GV 366
Query: 285 ENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYM 337
E +G +L+ R+ PVF PE T E L+E G L+ EQ+ + +L++ Y+
Sbjct: 367 EKIGKRLVNSREGP--PVFEQPEMTYEKLMEYGNMLVMEQENVKRVQLAETYL 417
>gi|358248528|ref|NP_001240152.1| ribulose bisphosphate carboxylase/oxygenase activase 1,
chloroplastic-like [Glycine max]
gi|290766479|gb|ADD60242.1| alpha-form rubisco activase [Glycine max]
gi|290766489|gb|ADD60247.1| alpha-form rubisco activase [Glycine max]
Length = 478
Score = 317 bits (813), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 156/294 (53%), Positives = 211/294 (71%), Gaps = 7/294 (2%)
Query: 46 YYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIM 105
+YIAP FM L+ HI KN++ L N+KVPLILGIWGGKGQGKSFQ EL+F MGI P++M
Sbjct: 135 FYIAPAFMDKLVVHISKNFMT-LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 193
Query: 106 SAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQ 164
SAGELES AGEP KLIR+RYR A+ +++ +GKM L IND+DAG GR G TQ TVNNQ
Sbjct: 194 SAGELESGNAGEPAKLIRQRYREAADMIK-KGKMCALFINDLDAGAGRLGGTTQYTVNNQ 252
Query: 165 IVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQP 224
+V TLMN++DNPT V + + + + R+PII TGNDFST+YAPLIRDGRMEKFYW P
Sbjct: 253 MVNATLMNIADNPTNVQLPGMYNKEE-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 311
Query: 225 NLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGV 284
+D + + + ++ D + KD++ +V TFP Q++DF+GALR+R YD + KWI + GV
Sbjct: 312 TRDDRVGVCNGIFRTDNVPKDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI-SVVGV 370
Query: 285 ENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYMK 338
+ +G KL+ ++ P F P+ T+ LLE G L++EQ+ + +L+ +Y+K
Sbjct: 371 DFIGKKLVNSKEGP--PTFDQPKMTLSKLLEYGNMLVQEQENVKRVQLADKYLK 422
>gi|13430332|gb|AAK25798.1|AF338237_1 rubisco activase, partial [Zantedeschia aethiopica]
Length = 436
Score = 317 bits (812), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 164/334 (49%), Positives = 226/334 (67%), Gaps = 12/334 (3%)
Query: 10 GVIDPLFAGNFLGKDSDIV---FDYRQKVTRSF--EYLQGDYYIAPVFMASLLCHIVKNY 64
G++D LF + V ++Y RSF + YIAP FM L+ HI KN+
Sbjct: 52 GMVDSLFQAPMGDGTHNPVLSSYEYISTGLRSFNLDNTVNGLYIAPAFMDKLVVHITKNF 111
Query: 65 IAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRE 124
+ +L N+K+PLILGIWGGKGQGKSFQ EL+F MGI P++MSAGELES AGEP KLIR+
Sbjct: 112 M-NLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQ 170
Query: 125 RYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIG 183
RYR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ+V TLMN++DNPT V +
Sbjct: 171 RYREAADIIR-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLP 229
Query: 184 QDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGIT 243
+ + + R+PII TGNDFST+YAPLIRDGRMEKFYW P +D + + ++ D +
Sbjct: 230 GMYNKQE-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRVGVCTGIFRSDNVP 288
Query: 244 KDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVF 303
K++V +V TFP Q++DF+GALR+R YD + KWI +I GV+ +G +L+ + P F
Sbjct: 289 KEDVIKLVDTFPGQSIDFFGALRARVYDDEVRKWIAEI-GVDGVGKRLVNSLEGP--PTF 345
Query: 304 TPPEKTVEALLESGYSLLREQQLIMETKLSKEYM 337
P+ T++ LLE G L++EQ+ + +L+ +Y+
Sbjct: 346 AQPKMTLDKLLEYGNMLVQEQENVKRVQLADKYL 379
>gi|3914605|sp|Q40281.1|RCA_MALDO RecName: Full=Ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic; Short=RA; Short=RuBisCO activase; Flags:
Precursor
gi|415852|emb|CAA79857.1| ribulose-1,5-bisphosphate carboxylase/oxygenase activase [Malus x
domestica]
Length = 437
Score = 317 bits (812), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 156/293 (53%), Positives = 210/293 (71%), Gaps = 7/293 (2%)
Query: 46 YYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIM 105
YYIAP FM L+ HI KN++ L N+KVPLILGIWGGKGQGKSFQ EL+F M I P++M
Sbjct: 131 YYIAPAFMDKLVVHITKNFMT-LPNMKVPLILGIWGGKGQGKSFQCELVFAKMRISPIMM 189
Query: 106 SAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQ 164
SAGELES AGEP KLIR+RYR A+ +++ +GKM L IND+DAG GR G TQ TVNNQ
Sbjct: 190 SAGELESGNAGEPAKLIRQRYREAADIIR-KGKMCALFINDLDAGAGRLGGTTQYTVNNQ 248
Query: 165 IVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQP 224
+V TLMN++DNPT V + + + + R+PII TGNDFST+YAPLIRDGRMEKFYW P
Sbjct: 249 MVNATLMNIADNPTNVQLPGMYNKEE-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 307
Query: 225 NLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGV 284
ED + + ++ D + K+++ +V TFP Q++DF+GALR+R YD + KWI + GV
Sbjct: 308 TREDRIGVCIGIFRSDNVAKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWITGV-GV 366
Query: 285 ENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYM 337
+++G KL+ ++ P F P+ T+E LLE G L++EQ+ + +L+ +Y+
Sbjct: 367 DSIGKKLVNSKEGP--PTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADKYL 417
>gi|308368980|gb|AAG22094.3| ribulose 1,5-bisphosphate carboxylase/oxygenase activase precursor
[Zea mays]
Length = 305
Score = 317 bits (812), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 157/291 (53%), Positives = 209/291 (71%), Gaps = 7/291 (2%)
Query: 48 IAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSA 107
IA FM L+ H+ KN++ L N+KVPLILGIWGGKGQGKSFQ EL+F MGI P++MSA
Sbjct: 1 IAKGFMDKLVVHLSKNFMT-LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGITPIMMSA 59
Query: 108 GELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIV 166
GELES AGEP KLIR+RYR AS +++ +GKMSCL IND+DAG GR G TQ TVNNQ+V
Sbjct: 60 GELESGNAGEPAKLIRQRYREASDLIK-KGKMSCLFINDLDAGAGRMGGTTQYTVNNQMV 118
Query: 167 VGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNL 226
TLMN++DNPT V + + + D R+PII TGNDFST+YAPLIRDGRMEKFYW P
Sbjct: 119 NATLMNIADNPTNVQLPGMYNKED-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTR 177
Query: 227 EDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVEN 286
ED + + ++ DG+ ++ V +V TFP Q++DF+GALR+R YD + +W+ + GVEN
Sbjct: 178 EDRIGVCKGIFRTDGVDEEHVVQLVDTFPGQSIDFFGALRARVYDDEVRRWVSET-GVEN 236
Query: 287 LGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYM 337
+ KL+ ++ P F P+ T+E LLE G+ L+ EQ+ + +L+ +Y+
Sbjct: 237 IARKLVNSKEGP--PTFEQPKITIEKLLEYGHMLVAEQENVKRVQLADKYL 285
>gi|358249078|ref|NP_001240245.1| ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic-like [Glycine max]
gi|290766485|gb|ADD60245.1| rubisco activase [Glycine max]
Length = 443
Score = 317 bits (812), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 166/333 (49%), Positives = 223/333 (66%), Gaps = 11/333 (3%)
Query: 10 GVIDPLF-AGNFLGKDSDIVFDYRQKVTRSFEYLQGD---YYIAPVFMASLLCHIVKNYI 65
G++D LF A G ++ Y T +YL + +YIAP FM L+ HI KN++
Sbjct: 96 GLVDSLFQAPQDAGTHYAVMSSYEYLSTGLRQYLDNNMDGFYIAPAFMDKLVVHITKNFM 155
Query: 66 AHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRER 125
L N+KVPLILGIWGGKGQGKSFQ EL+F MGI P++MSAGELES AGEP KLIR+R
Sbjct: 156 T-LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQR 214
Query: 126 YRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIGQ 184
YR A+ +++ +GKM L IND+DAG GR G TQ TVNNQ+V TLMN++DNPT V +
Sbjct: 215 YREAADLIK-KGKMCALFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPG 273
Query: 185 DWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITK 244
+ + + R+PII TGNDFST+YAPLIRDGRMEKFYW P +D + + ++ D I +
Sbjct: 274 MYNKEE-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCTGIFRTDSIPE 332
Query: 245 DEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVFT 304
+V IV TFP Q++DF+GALR+R YD + KWI + GV+ +G KL+ + P F
Sbjct: 333 QDVVKIVDTFPGQSIDFFGALRARVYDDEVRKWISGV-GVDGIGKKLVNSKDGP--PTFE 389
Query: 305 PPEKTVEALLESGYSLLREQQLIMETKLSKEYM 337
P+ T+E LL G L++EQ+ + +L+ +Y+
Sbjct: 390 QPKMTLEKLLTYGNMLVQEQENVKRVQLADKYL 422
>gi|15450379|gb|AAK96483.1| At2g39730/T5I7.3 [Arabidopsis thaliana]
Length = 474
Score = 316 bits (810), Expect = 8e-84, Method: Compositional matrix adjust.
Identities = 155/293 (52%), Positives = 210/293 (71%), Gaps = 7/293 (2%)
Query: 46 YYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIM 105
+YIAP FM L+ HI KN++ L N+KVPLILGIWGGKGQGKSFQ EL+ MGI P++M
Sbjct: 131 FYIAPAFMDKLVVHITKNFLT-LPNIKVPLILGIWGGKGQGKSFQCELVMAKMGINPIMM 189
Query: 106 SAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQ 164
SAGELES AGEP KLIR+RYR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ
Sbjct: 190 SAGELESGNAGEPAKLIRQRYREAADLIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQ 248
Query: 165 IVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQP 224
+V TLMN++DNPT V + + + + R+PII TGNDFST+YAPLIRDGRMEKFYW P
Sbjct: 249 MVNATLMNIADNPTNVQLPGMYNKEE-NARVPIICTGNDFSTLYAPLIRDGRMEKFYWAP 307
Query: 225 NLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGV 284
ED + + ++ D I +++ ++V FP+Q++DF+GALR+R YD + K+++ + GV
Sbjct: 308 TREDRIGVCKGIFRTDKIKDEDIVTLVDQFPDQSIDFFGALRARVYDDEVRKFVESL-GV 366
Query: 285 ENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYM 337
E +G +L+ R+ PVF PE T E L+E G L+ EQ+ + +L++ Y+
Sbjct: 367 EKIGKRLVNSREGP--PVFEQPEMTYEKLMEYGNMLVMEQENVKRVQLAETYL 417
>gi|116789808|gb|ABK25395.1| unknown [Picea sitchensis]
Length = 310
Score = 316 bits (810), Expect = 9e-84, Method: Compositional matrix adjust.
Identities = 158/293 (53%), Positives = 207/293 (70%), Gaps = 7/293 (2%)
Query: 46 YYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIM 105
YYIAP FM LL HI KN++ +L N+KVPLILGIWGGKGQGKSFQ EL+F +GI P++M
Sbjct: 4 YYIAPSFMDKLLVHISKNFM-NLPNIKVPLILGIWGGKGQGKSFQCELVFAKLGINPIMM 62
Query: 106 SAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNT-QMTVNNQ 164
SAGELES AGEP KL+R+RYR AS +V+ +GKM L IND+DAG GR G+T Q TVNNQ
Sbjct: 63 SAGELESGDAGEPAKLLRKRYREASDIVK-KGKMCVLFINDLDAGAGRMGSTTQYTVNNQ 121
Query: 165 IVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQP 224
+V TLMN++DNPT V + + D R+PI+ TGNDFST+YAPLIRDGRMEKFYW P
Sbjct: 122 MVNATLMNIADNPTNVQLPGMYNRQD-NPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAP 180
Query: 225 NLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGV 284
+D + + ++ D + D+V +V TFP Q++DF+GALR+R YD + KW+ G+
Sbjct: 181 TRDDRIGVCQGIFRADNVHPDDVVRLVDTFPGQSIDFFGALRARVYDDEVRKWVAGT-GI 239
Query: 285 ENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYM 337
+N+G KL+ ++ P F P T+E LLE G L+ EQ + +L+ +YM
Sbjct: 240 QNIGKKLINSKEGP--PTFEKPAMTIEKLLEYGNMLVGEQDNVKRLQLADKYM 290
>gi|10720253|sp|Q42450.1|RCAB_HORVU RecName: Full=Ribulose bisphosphate carboxylase/oxygenase activase
B, chloroplastic; Short=RA B; Short=RuBisCO activase B;
Flags: Precursor
gi|167093|gb|AAA62703.1| ribulose 1,5-bisphosphate carboxylase activase [Hordeum vulgare]
gi|167095|gb|AAA63162.1| ribulose 1,5-bisphosphate carboxylase activase [Hordeum vulgare
subsp. vulgare]
Length = 425
Score = 316 bits (810), Expect = 9e-84, Method: Compositional matrix adjust.
Identities = 160/334 (47%), Positives = 222/334 (66%), Gaps = 13/334 (3%)
Query: 10 GVIDPLFAGNFLGKDSDIVFDYRQKVTRS-----FEYLQGDYYIAPVFMASLLCHIVKNY 64
G++D LF + + + +++ F+ YIAP FM L+ H+ KN+
Sbjct: 78 GIVDSLFQAPMGDGTHEAILSSYEYISQGLRKYDFDNTMDGLYIAPAFMDKLIVHLAKNF 137
Query: 65 IAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRE 124
+ L N+KVPLILGIWGGKGQGKSFQ EL+F MGI P++MSAGELES GEP KLIR+
Sbjct: 138 MT-LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGN-GEPAKLIRQ 195
Query: 125 RYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIG 183
RYR A+ ++ N+GKM CL IND+DAG GR G TQ TVNNQ+V TLMN++D PT V +
Sbjct: 196 RYREAADII-NKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADAPTNVQLP 254
Query: 184 QDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGIT 243
+ + + R+PII TGNDFST+YAPLIRDGRMEKFYW P ED + + ++ D +
Sbjct: 255 GMYNKEE-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDNVP 313
Query: 244 KDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVF 303
+ V +V TFP Q++DF+GALR+R YD + KW+ +I GVEN+ +L+ R+ P F
Sbjct: 314 DEAVVRLVDTFPGQSIDFFGALRARVYDDEVRKWVGEI-GVENISKRLVNSREGP--PTF 370
Query: 304 TPPEKTVEALLESGYSLLREQQLIMETKLSKEYM 337
P+ T+E L+E G+ L++EQ+ + +L+ +Y+
Sbjct: 371 DQPKMTIEKLMEYGHMLVQEQENVKRVQLADKYL 404
>gi|13430334|gb|AAK25799.1|AF338238_1 rubisco activase [Zantedeschia aethiopica]
Length = 334
Score = 316 bits (810), Expect = 9e-84, Method: Compositional matrix adjust.
Identities = 155/292 (53%), Positives = 211/292 (72%), Gaps = 7/292 (2%)
Query: 47 YIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMS 106
YIAP FM L+ HI KN++ +L N+K+PLILGIWGGKGQGKSFQ EL+F MGI P++MS
Sbjct: 29 YIAPAFMDKLVVHITKNFM-NLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 87
Query: 107 AGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQI 165
AGELES AGEP KLIR+RYR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ+
Sbjct: 88 AGELESGNAGEPAKLIRQRYREAADIIR-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQM 146
Query: 166 VVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPN 225
V TLMN++DNPT V + + + + R+PII TGNDFST+YAPLIRDGRMEKFYW P
Sbjct: 147 VNATLMNIADNPTNVQLPGMYNKQE-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT 205
Query: 226 LEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVE 285
+D + + ++ D + K++V +V TFP Q++DF+GALR+R YD + KWI +I GV+
Sbjct: 206 RDDRVGVCTGIFRSDNVPKEDVIKLVDTFPGQSIDFFGALRARVYDDEVRKWIAEI-GVD 264
Query: 286 NLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYM 337
+G +L+ + P F P+ T++ LLE G L++EQ+ + +L+ +Y+
Sbjct: 265 GVGKRLVNSLEGP--PTFAQPKMTLDKLLEYGNMLVQEQENVKRVQLADKYL 314
>gi|30687999|ref|NP_850321.1| ribulose bisphosphate carboxylase/oxygenase activase [Arabidopsis
thaliana]
gi|330254622|gb|AEC09716.1| ribulose bisphosphate carboxylase/oxygenase activase [Arabidopsis
thaliana]
Length = 441
Score = 316 bits (810), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 155/293 (52%), Positives = 209/293 (71%), Gaps = 7/293 (2%)
Query: 46 YYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIM 105
+YIAP FM L+ HI KN++ L N+KVPLILGIWGGKGQGKSFQ EL+ MGI P++M
Sbjct: 131 FYIAPAFMDKLVVHITKNFLT-LPNIKVPLILGIWGGKGQGKSFQCELVMAKMGINPIMM 189
Query: 106 SAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQ 164
SAGELES AGEP KLIR+RYR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ
Sbjct: 190 SAGELESGNAGEPAKLIRQRYREAADLIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQ 248
Query: 165 IVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQP 224
+V TLMN++DNPT V + + + + R+PII TGNDFST+YAPLIRDGRMEKFYW P
Sbjct: 249 MVNATLMNIADNPTNVQLPGMYNKEE-NARVPIICTGNDFSTLYAPLIRDGRMEKFYWAP 307
Query: 225 NLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGV 284
ED + + ++ D I +++ ++V FP Q++DF+GALR+R YD + K+++ + GV
Sbjct: 308 TREDRIGVCKGIFRTDKIKDEDIVTLVDQFPGQSIDFFGALRARVYDDEVRKFVESL-GV 366
Query: 285 ENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYM 337
E +G +L+ R+ PVF PE T E L+E G L+ EQ+ + +L++ Y+
Sbjct: 367 EKIGKRLVNSREGP--PVFEQPEMTYEKLMEYGNMLVMEQENVKRVQLAETYL 417
>gi|225449432|ref|XP_002282979.1| PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic [Vitis vinifera]
Length = 438
Score = 316 bits (810), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 154/293 (52%), Positives = 209/293 (71%), Gaps = 7/293 (2%)
Query: 46 YYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIM 105
+YIAP FM L+ HI KN++ L N+KVPLILGIWGGKGQGKSFQ EL+F MGI P++M
Sbjct: 132 FYIAPAFMDKLVVHITKNFMT-LPNIKVPLILGIWGGKGQGKSFQCELVFSKMGINPIMM 190
Query: 106 SAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQ 164
SAGELES AGEP KLIR+RYR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ
Sbjct: 191 SAGELESGNAGEPAKLIRQRYREAADIIR-KGKMCCLFINDLDAGAGRLGGTTQYTVNNQ 249
Query: 165 IVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQP 224
+V TLMN++DNPT V + + + + R+P+I TGNDFST+YAPLIRDGRMEKFYW P
Sbjct: 250 MVNATLMNIADNPTNVQLPGMYNKEE-NPRVPVIVTGNDFSTLYAPLIRDGRMEKFYWAP 308
Query: 225 NLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGV 284
ED + + ++ D + +++ +V TFP Q++DF+GALR+R YD + WI I GV
Sbjct: 309 TREDRIGVCTGIFRTDNVPVEDIVKLVDTFPGQSIDFFGALRARVYDDMVRDWIAGI-GV 367
Query: 285 ENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYM 337
+ +G +L+ ++ P F P+ T+E LLE G L++EQ+ + +L+ +Y+
Sbjct: 368 DTVGKRLVNSKEGP--PSFEQPKMTLEKLLEYGSMLVQEQENVKRVQLADKYL 418
>gi|30687995|ref|NP_850320.1| ribulose bisphosphate carboxylase/oxygenase activase [Arabidopsis
thaliana]
gi|166835|gb|AAA20203.1| ribulose bisphosphate carboxylase/oxygenase activase [Arabidopsis
thaliana]
gi|15450671|gb|AAK96607.1| At2g39730/T5I7.3 [Arabidopsis thaliana]
gi|23397139|gb|AAN31853.1| unknown protein [Arabidopsis thaliana]
gi|330254621|gb|AEC09715.1| ribulose bisphosphate carboxylase/oxygenase activase [Arabidopsis
thaliana]
Length = 446
Score = 316 bits (809), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 155/293 (52%), Positives = 209/293 (71%), Gaps = 7/293 (2%)
Query: 46 YYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIM 105
+YIAP FM L+ HI KN++ L N+KVPLILGIWGGKGQGKSFQ EL+ MGI P++M
Sbjct: 131 FYIAPAFMDKLVVHITKNFLT-LPNIKVPLILGIWGGKGQGKSFQCELVMAKMGINPIMM 189
Query: 106 SAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQ 164
SAGELES AGEP KLIR+RYR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ
Sbjct: 190 SAGELESGNAGEPAKLIRQRYREAADLIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQ 248
Query: 165 IVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQP 224
+V TLMN++DNPT V + + + + R+PII TGNDFST+YAPLIRDGRMEKFYW P
Sbjct: 249 MVNATLMNIADNPTNVQLPGMYNKEE-NARVPIICTGNDFSTLYAPLIRDGRMEKFYWAP 307
Query: 225 NLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGV 284
ED + + ++ D I +++ ++V FP Q++DF+GALR+R YD + K+++ + GV
Sbjct: 308 TREDRIGVCKGIFRTDKIKDEDIVTLVDQFPGQSIDFFGALRARVYDDEVRKFVESL-GV 366
Query: 285 ENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYM 337
E +G +L+ R+ PVF PE T E L+E G L+ EQ+ + +L++ Y+
Sbjct: 367 EKIGKRLVNSREGP--PVFEQPEMTYEKLMEYGNMLVMEQENVKRVQLAETYL 417
>gi|407911668|gb|AFU50382.1| chloroplast ribulose bisphosphate carboxylase/oxygenase activase
large isoform a [Ipomoea batatas]
Length = 484
Score = 316 bits (809), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 155/294 (52%), Positives = 210/294 (71%), Gaps = 7/294 (2%)
Query: 46 YYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIM 105
+YIAP FM L+ HI KN++ L N+K+PLILG+WGGKGQGKSFQ EL+F+ MGI P++M
Sbjct: 141 FYIAPAFMDKLVVHITKNFL-KLPNIKIPLILGVWGGKGQGKSFQCELVFRKMGINPIMM 199
Query: 106 SAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQ 164
SAGELES AGEP KLIR+RYR A+++++ +G M L IND+DAG GR G TQ TVNNQ
Sbjct: 200 SAGELESGNAGEPAKLIRQRYREAAEIIR-KGNMCVLFINDLDAGAGRMGGTTQYTVNNQ 258
Query: 165 IVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQP 224
+V TLMN++DNPT V + + + + R+PII TGNDFST+YAPLIRDGRMEKFYW P
Sbjct: 259 MVNATLMNIADNPTNVQLPGMYNKQE-NARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 317
Query: 225 NLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGV 284
ED + + ++ DG+ + V +V TFP Q++DF+GALR+R YD + K+I I GV
Sbjct: 318 TREDRIGVCKGIFRTDGVPDEHVVKLVDTFPGQSIDFFGALRARVYDDEVRKFIASI-GV 376
Query: 285 ENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYMK 338
+ + +LL R P F P+ T+E LL+ GY L++EQ+ + +L+ +Y+K
Sbjct: 377 DAVNERLLNSRDGP--PKFDQPKMTIEKLLQYGYMLVQEQENVKRVQLADKYLK 428
>gi|18405145|ref|NP_565913.1| ribulose bisphosphate carboxylase/oxygenase activase [Arabidopsis
thaliana]
gi|12643259|sp|P10896.2|RCA_ARATH RecName: Full=Ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic; Short=RA; Short=RuBisCO activase; Flags:
Precursor
gi|11762250|gb|AAG40401.1|AF325049_1 At2g39730 [Arabidopsis thaliana]
gi|166834|gb|AAA20202.1| ribulose bisphosphate carboxylase/oxygenase activase [Arabidopsis
thaliana]
gi|2642155|gb|AAB87122.1| expressed protein [Arabidopsis thaliana]
gi|15810188|gb|AAL06995.1| At2g39730/T5I7.3_ [Arabidopsis thaliana]
gi|21594581|gb|AAM66023.1| unknown [Arabidopsis thaliana]
gi|330254620|gb|AEC09714.1| ribulose bisphosphate carboxylase/oxygenase activase [Arabidopsis
thaliana]
Length = 474
Score = 316 bits (809), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 155/293 (52%), Positives = 209/293 (71%), Gaps = 7/293 (2%)
Query: 46 YYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIM 105
+YIAP FM L+ HI KN++ L N+KVPLILGIWGGKGQGKSFQ EL+ MGI P++M
Sbjct: 131 FYIAPAFMDKLVVHITKNFLT-LPNIKVPLILGIWGGKGQGKSFQCELVMAKMGINPIMM 189
Query: 106 SAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQ 164
SAGELES AGEP KLIR+RYR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ
Sbjct: 190 SAGELESGNAGEPAKLIRQRYREAADLIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQ 248
Query: 165 IVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQP 224
+V TLMN++DNPT V + + + + R+PII TGNDFST+YAPLIRDGRMEKFYW P
Sbjct: 249 MVNATLMNIADNPTNVQLPGMYNKEE-NARVPIICTGNDFSTLYAPLIRDGRMEKFYWAP 307
Query: 225 NLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGV 284
ED + + ++ D I +++ ++V FP Q++DF+GALR+R YD + K+++ + GV
Sbjct: 308 TREDRIGVCKGIFRTDKIKDEDIVTLVDQFPGQSIDFFGALRARVYDDEVRKFVESL-GV 366
Query: 285 ENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYM 337
E +G +L+ R+ PVF PE T E L+E G L+ EQ+ + +L++ Y+
Sbjct: 367 EKIGKRLVNSREGP--PVFEQPEMTYEKLMEYGNMLVMEQENVKRVQLAETYL 417
>gi|297827581|ref|XP_002881673.1| hypothetical protein ARALYDRAFT_482998 [Arabidopsis lyrata subsp.
lyrata]
gi|297327512|gb|EFH57932.1| hypothetical protein ARALYDRAFT_482998 [Arabidopsis lyrata subsp.
lyrata]
Length = 474
Score = 316 bits (809), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 155/293 (52%), Positives = 209/293 (71%), Gaps = 7/293 (2%)
Query: 46 YYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIM 105
+YIAP FM L+ HI KN++ L N+KVPLILGIWGGKGQGKSFQ EL+ MGI P++M
Sbjct: 131 FYIAPAFMDKLVVHITKNFLT-LPNIKVPLILGIWGGKGQGKSFQCELVMAKMGINPIMM 189
Query: 106 SAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQ 164
SAGELES AGEP KLIR+RYR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ
Sbjct: 190 SAGELESGNAGEPAKLIRQRYREAADMIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQ 248
Query: 165 IVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQP 224
+V TLMN++DNPT V + + + + R+PII TGNDFST+YAPLIRDGRMEKFYW P
Sbjct: 249 MVNATLMNIADNPTNVQLPGMYNKEE-NARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 307
Query: 225 NLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGV 284
ED + + ++ D I +++ ++V FP Q++DF+GALR+R YD + K+++ + GV
Sbjct: 308 TREDRIGVCKGIFRTDKIKDEDIVTLVDQFPGQSIDFFGALRARVYDDEVRKFVEGL-GV 366
Query: 285 ENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYM 337
E +G +L+ R+ PVF PE T+E L+E G L+ EQ+ + +L+ Y+
Sbjct: 367 EKIGKRLVNSREGP--PVFEQPEMTLEKLMEYGNMLVMEQENVKRVQLADTYL 417
>gi|407911664|gb|AFU50380.1| chloroplast ribulose bisphosphate carboxylase/oxygenase activase
large isoform [Ipomoea batatas]
gi|407911672|gb|AFU50384.1| chloroplast ribulose bisphosphate carboxylase/oxygenase activase
large isoform c [Ipomoea batatas]
Length = 484
Score = 316 bits (809), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 155/294 (52%), Positives = 210/294 (71%), Gaps = 7/294 (2%)
Query: 46 YYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIM 105
+YIAP FM L+ HI KN++ L N+K+PLILG+WGGKGQGKSFQ EL+F+ MGI P++M
Sbjct: 141 FYIAPAFMDKLVVHITKNFL-KLPNIKIPLILGVWGGKGQGKSFQCELVFRKMGINPIMM 199
Query: 106 SAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQ 164
SAGELES AGEP KLIR+RYR A+++++ +G M L IND+DAG GR G TQ TVNNQ
Sbjct: 200 SAGELESGNAGEPAKLIRQRYREAAEIIR-KGNMCVLFINDLDAGAGRMGGTTQYTVNNQ 258
Query: 165 IVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQP 224
+V TLMN++DNPT V + + + + R+PII TGNDFST+YAPLIRDGRMEKFYW P
Sbjct: 259 MVNATLMNIADNPTNVQLPGMYNKQE-NARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 317
Query: 225 NLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGV 284
ED + + ++ DG+ + V +V TFP Q++DF+GALR+R YD + K+I I GV
Sbjct: 318 TREDRIGVCKGIFRTDGVPDEHVVKLVDTFPGQSIDFFGALRARVYDDEVRKFIASI-GV 376
Query: 285 ENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYMK 338
+ + +LL R P F P+ T+E LL+ GY L++EQ+ + +L+ +Y+K
Sbjct: 377 DAVNERLLNSRDGP--PKFDQPKMTIEKLLQYGYMLVQEQENVKRVQLADKYLK 428
>gi|407911670|gb|AFU50383.1| chloroplast ribulose bisphosphate carboxylase/oxygenase activase
large isoform b [Ipomoea batatas]
Length = 484
Score = 316 bits (809), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 155/294 (52%), Positives = 210/294 (71%), Gaps = 7/294 (2%)
Query: 46 YYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIM 105
+YIAP FM L+ HI KN++ L N+K+PLILG+WGGKGQGKSFQ EL+F+ MGI P++M
Sbjct: 141 FYIAPAFMDKLVVHITKNFL-KLPNIKIPLILGVWGGKGQGKSFQCELVFRKMGINPIMM 199
Query: 106 SAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQ 164
SAGELES AGEP KLIR+RYR A+++++ +G M L IND+DAG GR G TQ TVNNQ
Sbjct: 200 SAGELESGNAGEPAKLIRQRYREAAEIIR-KGNMCVLFINDLDAGAGRMGGTTQYTVNNQ 258
Query: 165 IVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQP 224
+V TLMN++DNPT V + + + + R+PII TGNDFST+YAPLIRDGRMEKFYW P
Sbjct: 259 MVNATLMNIADNPTNVQLPGMYNKQE-NARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 317
Query: 225 NLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGV 284
ED + + ++ DG+ + V +V TFP Q++DF+GALR+R YD + K+I I GV
Sbjct: 318 TREDRIGVCKGIFRTDGVPDEHVVKLVDTFPGQSIDFFGALRARVYDDEVRKFIASI-GV 376
Query: 285 ENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYMK 338
+ + +LL R P F P+ T+E LL+ GY L++EQ+ + +L+ +Y+K
Sbjct: 377 DAVNERLLNSRDGP--PKFDQPKMTIEKLLQYGYMLVQEQENVKRVQLADKYLK 428
>gi|293331415|ref|NP_001168488.1| uncharacterized protein LOC100382265 [Zea mays]
gi|223948617|gb|ACN28392.1| unknown [Zea mays]
gi|413920135|gb|AFW60067.1| hypothetical protein ZEAMMB73_533261 [Zea mays]
Length = 463
Score = 315 bits (808), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 161/335 (48%), Positives = 224/335 (66%), Gaps = 14/335 (4%)
Query: 10 GVIDPLFAGNFLGKDSDIV----FDYRQKVTR--SFEYLQGDYYIAPVFMASLLCHIVKN 63
G +DPLF +G + + +DY + R S + + YYIAP FM L+ HI KN
Sbjct: 84 GRVDPLFQAP-MGDGTHVAVLSSYDYISQGLRHYSLDNMMDGYYIAPAFMDKLVVHIAKN 142
Query: 64 YIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIR 123
++ L N+KVPLILGIWGGKGQGKSFQ EL+ MGI P++MSAGELES AGEP KLIR
Sbjct: 143 FMP-LPNIKVPLILGIWGGKGQGKSFQCELVLAKMGINPIVMSAGELESGNAGEPAKLIR 201
Query: 124 ERYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSI 182
+RYR A+ +++ +GKM L IND+DAG GR G TQ TVNNQ+V TLMN++DNPT V +
Sbjct: 202 QRYREAADMIK-KGKMCVLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQL 260
Query: 183 GQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGI 242
+ + + R+PII TGNDFST+YAPLIRDGRM+KFYW P ED + + ++ DG+
Sbjct: 261 PGMYNKEE-NPRVPIIVTGNDFSTLYAPLIRDGRMDKFYWAPTREDRVGVCKGIFRSDGV 319
Query: 243 TKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPV 302
++V +V FP Q++DF+GALR+R YD + +W+ + GVEN+ +L+ ++ P
Sbjct: 320 PDEDVVRLVDAFPGQSIDFFGALRARVYDDEVRRWVAET-GVENIARRLVNSKEGP--PT 376
Query: 303 FTPPEKTVEALLESGYSLLREQQLIMETKLSKEYM 337
F P T++ L+E G L+ EQ+ + +L+ +Y+
Sbjct: 377 FEQPRMTLDKLMEYGRMLVEEQENVKRVQLADKYL 411
>gi|303277399|ref|XP_003057993.1| ribulose bisphosphate carboxylase/oxygenase activase, chloroplast
precursor [Micromonas pusilla CCMP1545]
gi|226460650|gb|EEH57944.1| ribulose bisphosphate carboxylase/oxygenase activase, chloroplast
precursor [Micromonas pusilla CCMP1545]
Length = 419
Score = 315 bits (807), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 161/334 (48%), Positives = 226/334 (67%), Gaps = 10/334 (2%)
Query: 10 GVIDPLFAGNF-LGKDSDIVFDYRQKVTRSFEYLQG----DYYIAPVFMASLLCHIVKNY 64
G++D F G F LG + + V+ F+ L YYI+ +M + H+ KN+
Sbjct: 66 GMVDSKFQGGFGLGGTQNAIMQGSDYVSDGFKDLSNMSDEGYYISKSYMDKITVHVAKNF 125
Query: 65 IAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRE 124
+ L +KVPLILGIWGGKGQGK+FQ+ LIF+ +GI P+IMSAGELES AGEP KLIR+
Sbjct: 126 M-DLPKIKVPLILGIWGGKGQGKTFQSTLIFKRLGIAPIIMSAGELESGNAGEPAKLIRQ 184
Query: 125 RYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIG 183
RYR AS +++ +GKMS L IND+DAG GR G +TQ TVNNQ+V TLMNL+DNPT V +
Sbjct: 185 RYREASDIIK-KGKMSTLFINDLDAGAGRMGGSTQYTVNNQMVNATLMNLADNPTNVQLP 243
Query: 184 QDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGIT 243
++ +I R+PII TGNDFST+YAPLIRDGRM+KFYW P ED + +++ DG+
Sbjct: 244 GQYQVEEIP-RVPIIATGNDFSTLYAPLIRDGRMDKFYWSPTFEDRCGVACGIFKADGVN 302
Query: 244 KDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVF 303
+ +V +V+TF Q++DF+GALR+R YD+ + +W+ + G EN+G+ L+ +DK F
Sbjct: 303 EKDVEVLVRTFDGQSIDFFGALRARVYDQKVREWVQTV-GQENIGSYLVNPSRDKGKLEF 361
Query: 304 TPPEKTVEALLESGYSLLREQQLIMETKLSKEYM 337
PP ++E LL+ G +L EQ+ + +L+ Y+
Sbjct: 362 EPPVMSLEVLLQHGKALEGEQENVKRVQLADAYL 395
>gi|356624532|pdb|3T15|A Chain A, Structure Of Green-Type Rubisco Activase From Tobacco
gi|356624733|pdb|3ZW6|A Chain A, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
gi|356624734|pdb|3ZW6|B Chain B, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
gi|356624735|pdb|3ZW6|C Chain C, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
gi|356624736|pdb|3ZW6|D Chain D, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
gi|356624737|pdb|3ZW6|E Chain E, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
gi|356624738|pdb|3ZW6|F Chain F, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco
Length = 293
Score = 313 bits (803), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 155/289 (53%), Positives = 205/289 (70%), Gaps = 7/289 (2%)
Query: 46 YYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIM 105
+YIAP FM L+ HI KN++ L N+KVPLILGIWGGKGQGKSFQ EL+F+ MGI P++M
Sbjct: 9 FYIAPAFMDKLVVHITKNFL-KLPNIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMM 67
Query: 106 SAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQ 164
SAGELES AGEP KLIR+RYR A+++++ +G M CL IND+DAG GR G TQ TVNNQ
Sbjct: 68 SAGELESGNAGEPAKLIRQRYREAAEIIR-KGNMCCLFINDLDAGAGRMGGTTQYTVNNQ 126
Query: 165 IVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQP 224
+V TLMN++DNPT V + + + + R+PII TGNDFST+YAPLIRDGRMEKFYW P
Sbjct: 127 MVNATLMNIADNPTNVQLPGMYNKQE-NARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 185
Query: 225 NLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGV 284
ED + + ++ D + ++V IV FP Q++DF+GALR+R YD + KW+ G+
Sbjct: 186 TREDRIGVCTGIFRTDNVPAEDVVKIVDNFPGQSIDFFGALRARVYDDEVRKWVSGT-GI 244
Query: 285 ENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLS 333
E +G+KLL P F P+ T+E LLE G L++EQ+ + +L+
Sbjct: 245 EKIGDKLLNSFDGP--PTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLA 291
>gi|168047149|ref|XP_001776034.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162672692|gb|EDQ59226.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 455
Score = 313 bits (801), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 165/357 (46%), Positives = 226/357 (63%), Gaps = 34/357 (9%)
Query: 10 GVIDPLFAGNFLGKDSDIV----FDYRQKVTRSFEY--LQGDYYIAPVFMASLLCHIVKN 63
G++D LF G G + +V +DY R++ + YIAP FM L+ H+ KN
Sbjct: 90 GMVDALFQGA-TGLGTQVVTMSSWDYVSTAQRTYNFDNTSDGLYIAPAFMDKLVIHVCKN 148
Query: 64 YIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGI--------------------EPV 103
++ +L +KVPLILG+WGGKGQGKSFQ+EL+ + +GI P+
Sbjct: 149 FM-NLPGIKVPLILGVWGGKGQGKSFQSELVMKKLGINSGRGLLSSLVTLSFEISMCHPI 207
Query: 104 IMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVN 162
+MSAGELES AGEP KLIR+RYR A+ ++Q +GKM CL IND+DAG GR G TQ TVN
Sbjct: 208 MMSAGELESGNAGEPAKLIRQRYREAAAIIQ-KGKMCCLFINDLDAGAGRMGGTTQYTVN 266
Query: 163 NQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYW 222
NQ+V TLMN++D+PT V + + + +I R+PII TGNDFST+YAPLIRDGRMEKFYW
Sbjct: 267 NQMVNATLMNIADSPTNVQLPGVYNKEEIP-RVPIIVTGNDFSTLYAPLIRDGRMEKFYW 325
Query: 223 QPNLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIG 282
P ED + + ++ D I+ D V +V FP Q++DF+GALR+R YD + WI
Sbjct: 326 APTREDRIGVCKGIFRLDNISDDNVTKMVDMFPGQSIDFFGALRARVYDDEVRNWISAT- 384
Query: 283 GVENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYMKN 339
GVENLG L+ + P F P T+E L+E G L++EQQ + +L+++Y+ +
Sbjct: 385 GVENLGKNLVNSKDGP--PEFKKPAMTIEKLMEYGQMLVQEQQNVKRVQLAEQYLNS 439
>gi|383470439|gb|AFH35543.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase
activase [Brassica oleracea]
Length = 438
Score = 312 bits (800), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 152/292 (52%), Positives = 208/292 (71%), Gaps = 7/292 (2%)
Query: 47 YIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMS 106
+IAP FM L+ HI KN++ L N+KVPLILGIWGGKGQGKSFQ EL+ MGI P++MS
Sbjct: 133 FIAPAFMDKLVVHITKNFLT-LPNIKVPLILGIWGGKGQGKSFQCELVMAKMGINPIMMS 191
Query: 107 AGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQI 165
AGELES AGEP KLIR+RYR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ+
Sbjct: 192 AGELESGNAGEPAKLIRQRYREAADMIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQM 250
Query: 166 VVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPN 225
V TLMN++DNPT V + + + + R+PII TGNDFST+YAPLIRDGRMEKFYW P
Sbjct: 251 VNATLMNIADNPTNVQLPGMYNKEE-NARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT 309
Query: 226 LEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVE 285
ED + + ++ D + +++ ++V FP Q++DF+GALR+R YD + K+++ + GVE
Sbjct: 310 REDRIGVCKGIFRTDNVKDEDIVTLVDQFPGQSIDFFGALRARVYDDEVRKFVEGL-GVE 368
Query: 286 NLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYM 337
+G +L+ R+ PVF P T+E L+E G L+ EQ+ + +L+ +Y+
Sbjct: 369 KIGKRLVNSREGP--PVFEQPAMTLEKLMEYGNMLVMEQENVKRVQLADQYL 418
>gi|427542680|gb|AFY63117.1| alpha-form Rubisco activase [Zea mays]
Length = 463
Score = 312 bits (799), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 160/335 (47%), Positives = 223/335 (66%), Gaps = 14/335 (4%)
Query: 10 GVIDPLFAGNFLGKDSDIV----FDYRQKVTR--SFEYLQGDYYIAPVFMASLLCHIVKN 63
G +DPLF +G + + +DY + R S + + YYIAP FM L+ HI KN
Sbjct: 84 GRVDPLFQAP-MGDGTHVAVLSSYDYISQGLRHYSLDNMMDGYYIAPAFMDKLVVHIAKN 142
Query: 64 YIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIR 123
++ L N+KVPLILGIWGGKGQGKSFQ EL+ MGI P++MSAGELES AGEP KLIR
Sbjct: 143 FMP-LPNIKVPLILGIWGGKGQGKSFQCELVLAKMGINPIVMSAGELESGNAGEPAKLIR 201
Query: 124 ERYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSI 182
+RYR A+ +++ +GKM L IND+ AG GR G TQ TVNNQ+V TLMN++DNPT V +
Sbjct: 202 QRYREAADMIK-KGKMCVLFINDLYAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQL 260
Query: 183 GQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGI 242
+ + + R+PII TGNDFST+YAPLIRDGRM+KFYW P ED + + ++ DG+
Sbjct: 261 PGMYNKEE-NPRVPIIVTGNDFSTLYAPLIRDGRMDKFYWAPTREDRVGVCKGIFRSDGV 319
Query: 243 TKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPV 302
++V +V FP Q++DF+GALR+R YD + +W+ + GVEN+ +L+ ++ P
Sbjct: 320 PDEDVVRLVDAFPGQSIDFFGALRARVYDDEVRRWVAET-GVENIARRLVNSKEGP--PT 376
Query: 303 FTPPEKTVEALLESGYSLLREQQLIMETKLSKEYM 337
F P T++ L+E G L+ EQ+ + +L+ +Y+
Sbjct: 377 FEQPRMTLDKLMEYGRMLVEEQENVKRVQLADKYL 411
>gi|10720248|sp|O64981.1|RCA_PHAVU RecName: Full=Ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic; Short=RA; Short=RuBisCO activase; Flags:
Precursor
gi|3033513|gb|AAC12868.1| rubisco activase [Phaseolus vulgaris]
Length = 441
Score = 312 bits (799), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 152/301 (50%), Positives = 212/301 (70%), Gaps = 7/301 (2%)
Query: 38 SFEYLQGDYYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQA 97
+F+ ++ +YIAP F+ L+ HI KN++ L N+KVPLILG+WGGKGQGKSFQ EL+F
Sbjct: 127 NFDNIKDGFYIAPAFLDKLVVHIAKNFMT-LPNIKVPLILGVWGGKGQGKSFQCELVFAK 185
Query: 98 MGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG-N 156
MGI P++MSAGELES AGEP KLIR+RYR AS +++ +GKM L IND+DAG GR G
Sbjct: 186 MGINPIMMSAGELESGNAGEPAKLIRQRYREASDLIK-KGKMCVLFINDLDAGAGRLGGT 244
Query: 157 TQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGR 216
TQ TVNNQ+V TLMN++DNPT V + + + D R+PII TGNDFST+YAPLIRDGR
Sbjct: 245 TQYTVNNQMVNATLMNIADNPTNVQLPGMYNKED-NARVPIIVTGNDFSTLYAPLIRDGR 303
Query: 217 MEKFYWQPNLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISK 276
MEKFYW P ED + + ++ DG+ + ++ +V P Q++DF+GALR+R YD + K
Sbjct: 304 MEKFYWAPTREDRIGVCKGIFRTDGVPEKDIVELVDKHPGQSIDFFGALRARVYDDEVRK 363
Query: 277 WIDDIGGVENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEY 336
WI + GV+++G KL+ ++ P F P+ T++ LL L++EQ+ + +L+ +Y
Sbjct: 364 WISGV-GVDSVGKKLVNSKEGP--PTFDQPKMTLDKLLLYASMLVQEQENVKRVQLADQY 420
Query: 337 M 337
+
Sbjct: 421 L 421
>gi|168052682|ref|XP_001778769.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669888|gb|EDQ56467.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 471
Score = 311 bits (798), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 162/336 (48%), Positives = 223/336 (66%), Gaps = 12/336 (3%)
Query: 10 GVIDPLFAG-NFLGKDSDIVFDY----RQKVTRSFEYLQGDYYIAPVFMASLLCHIVKNY 64
G++D LF G LG + I+ + + + T S + ++ YIAP FM L+ HI KN+
Sbjct: 82 GMVDALFQGAQGLGTQNAIMSSWGYVSQGQRTYSMDNIKDGLYIAPAFMDKLVIHIAKNF 141
Query: 65 IAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRE 124
+ +L +KVPLILGIWGGKGQGKSFQ EL+ +GI P++MSAGELES AGEP KLIR+
Sbjct: 142 M-NLPGIKVPLILGIWGGKGQGKSFQCELVMSKLGINPIVMSAGELESGNAGEPAKLIRQ 200
Query: 125 RYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIG 183
RYR A+ V++ +GKM L IND+DAG GR G TQ TVNNQ+V TLMN++DNPT V +
Sbjct: 201 RYREAADVIK-KGKMCALFINDLDAGTGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLP 259
Query: 184 QDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGIT 243
+ + I R+PII TGNDF T+YAPLIRDGRMEKFYW P ED + + ++ D +
Sbjct: 260 SIYNKETIP-RVPIIVTGNDFPTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRLDNVH 318
Query: 244 KDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVF 303
+V +V FP Q++DF+GALR+R YD + KWI + G+EN+G L+ + P F
Sbjct: 319 DYDVAKLVDQFPGQSIDFFGALRARVYDDEVRKWIAKV-GIENIGRNLVNSKDGP--PTF 375
Query: 304 TPPEKTVEALLESGYSLLREQQLIMETKLSKEYMKN 339
P T++ L+E G L++EQQ + +L+ +Y+ +
Sbjct: 376 QKPAMTIDKLMEYGNLLVQEQQNVKRVQLADKYLSS 411
>gi|303281738|ref|XP_003060161.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226458816|gb|EEH56113.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 498
Score = 311 bits (796), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 166/362 (45%), Positives = 231/362 (63%), Gaps = 21/362 (5%)
Query: 1 MNIAVGARAGVIDPLFAG----NF-LGKDSDIVF-DYRQKVTRSFEYLQGDYYIAPVFMA 54
+ VGAR GV+D +FAG NF LG D+DI + R RS + Y+ P FM
Sbjct: 101 LRTEVGARKGVVDDVFAGTANANFVLGADADIATGELRYTEARSLTNVVDGCYVPPRFMD 160
Query: 55 SLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESER 114
+ H+VKN++A + +VPLILGIWG KG GKS+ EL +AM P+I+SAGELE E
Sbjct: 161 KVCVHLVKNHLAEGVG-QVPLILGIWGEKGCGKSYTLELCLRAMRASPIIVSAGELEDEW 219
Query: 115 AGEPGKLIRERYRTASQVVQNQ-------GKMSCLMINDIDAGLGRFGNTQMTVNNQIVV 167
AG PG+ IRERYR AS+++ G+++CL+IND+DAG G + TQ TVN Q+V+
Sbjct: 220 AGAPGRRIRERYRAASRLMSQARSISTLTGRLACLVINDLDAGAGTYRATQKTVNMQMVM 279
Query: 168 GTLMNLSDNPTRVSIG-QDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNL 226
GTLMNL D+PT VS+G ++WRE R+PII TGND ST+YAPL+RDGRM+KF W P++
Sbjct: 280 GTLMNLCDHPTSVSVGAEEWREDRELRRVPIIITGNDLSTLYAPLLRDGRMDKFMWAPSI 339
Query: 227 EDILNIVHRMYEKDGITKDEVGSIVKTFPNQA---LDFYGALRSRTYDRSISKWIDDIGG 283
++ VH + G+T + +V+ F NQA LDF+GAL +RT D ++ +WI GG
Sbjct: 340 DERAAAVHAVMADAGVTARDALELVRAFSNQARSPLDFFGALHARTVDAAVLEWIARNGG 399
Query: 284 VENLGNKLLK-RRKDKELPVF--TPPEKTVEALLESGYSLLREQQLIMETKLSKEYMKNI 340
+G+ LL+ + ++ P + T+EALLE G L REQQ +++ +L EYMK +
Sbjct: 400 ARGMGDALLRGDARTRKAPSVDRSSSRLTLEALLEIGRELEREQQRVLDVRLVDEYMKGV 459
Query: 341 DD 342
+
Sbjct: 460 KE 461
>gi|302840850|ref|XP_002951971.1| hypothetical protein VOLCADRAFT_105291 [Volvox carteri f.
nagariensis]
gi|300262872|gb|EFJ47076.1| hypothetical protein VOLCADRAFT_105291 [Volvox carteri f.
nagariensis]
Length = 409
Score = 309 bits (791), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 154/332 (46%), Positives = 226/332 (68%), Gaps = 12/332 (3%)
Query: 11 VIDPLFAGNF-LGKDSDIVF---DYRQKVTRSFEYLQGDYYIAPVFMASLLCHIVKNYIA 66
++D LF G F G + V +Y + SF ++ +YI+P F+ + HI KN++
Sbjct: 65 MVDDLFQGGFGAGGTHNAVLSSTEYLSQARASFNNIEDGFYISPAFLDKMTIHIAKNFM- 123
Query: 67 HLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERY 126
L +KVPLILGIWGGKGQGK+FQ L ++ +GI P++MSAGELES AGEP KLIR RY
Sbjct: 124 DLPKIKVPLILGIWGGKGQGKTFQCALAYKKLGISPIVMSAGELESGNAGEPAKLIRTRY 183
Query: 127 RTASQVVQNQGKMSCLMINDIDAGLGRFGNT-QMTVNNQIVVGTLMNLSDNPTRVSIGQD 185
R AS +++ +GKM L IND+DAG GR G+T Q TVNNQ+V TLMN++DNPT V +
Sbjct: 184 REASDIIK-KGKMCSLFINDLDAGAGRMGDTTQYTVNNQMVNATLMNIADNPTNVQLPGV 242
Query: 186 WRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITKD 245
++ +I R+PI+ TGNDFST+YAPLIRDGRMEK+YW P ED + + ++++D +++
Sbjct: 243 YKNEEIP-RVPIVCTGNDFSTLYAPLIRDGRMEKYYWNPTREDRIGVCMGIFQEDNVSRG 301
Query: 246 EVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVFTP 305
+V +V TFP Q++DF+GALR+R YD + KWI ++ G+E +G+KL+ R+ P +
Sbjct: 302 DVERLVDTFPGQSIDFFGALRARVYDDMVRKWIAEV-GIEGIGSKLVNGRQKVSFPKVS- 359
Query: 306 PEKTVEALLESGYSLLREQQLIMETKLSKEYM 337
+++ LL+ G +L+ EQ+ + +L+ Y+
Sbjct: 360 --MSLDVLLKYGRALVDEQENVKRVQLADAYL 389
>gi|412985893|emb|CCO17093.1| predicted protein [Bathycoccus prasinos]
Length = 480
Score = 309 bits (791), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 158/335 (47%), Positives = 229/335 (68%), Gaps = 13/335 (3%)
Query: 11 VIDPLFAGNF-LGKDSDIVF---DYRQKVTRSFEYLQGD---YYIAPVFMASLLCHIVKN 63
++D F G F +G + V DY + ++ + L D YYI+P F+ H+ KN
Sbjct: 132 MVDSKFQGGFGMGGTHNAVMSSTDYISQGQKNLDNLSVDGNNYYISPSFLDKTAVHVAKN 191
Query: 64 YIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIR 123
++ L +KVPLILG+WGGKGQGK+FQ+ LIF +GI P++MSAGELES AGEP KL+R
Sbjct: 192 FM-DLPKIKVPLILGVWGGKGQGKTFQSNLIFAKLGISPIVMSAGELESGNAGEPAKLVR 250
Query: 124 ERYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSI 182
+RYR AS +V+ +GK+S L IND+DAG GR G TQ TVNNQ+V TLMN++DNPT V +
Sbjct: 251 QRYREASDIVK-KGKLSTLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQL 309
Query: 183 GQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGI 242
+ +I R+P+I TGNDFST+YAPL+RDGRM+KFYW P ED + I + +++ DG+
Sbjct: 310 PGQYEVVEIP-RVPVIATGNDFSTLYAPLVRDGRMDKFYWAPTFEDRVGIANGIFKADGV 368
Query: 243 TKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPV 302
+ +V S+V+ F Q++DF+GALR+R YD + ++I ++ G+EN+G +L+ RK +E+
Sbjct: 369 DEADVRSLVEAFDGQSIDFFGALRARVYDDKVREFIQEM-GLENIGKRLVNVRKGEEVS- 426
Query: 303 FTPPEKTVEALLESGYSLLREQQLIMETKLSKEYM 337
F P ++E LLE G +L EQ+ + +L+ Y+
Sbjct: 427 FDAPAMSIEILLEYGKALENEQENVKRVQLADAYL 461
>gi|1805719|emb|CAA71667.1| Rubisco activase [Chlorococcum littorale]
Length = 403
Score = 308 bits (790), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 156/332 (46%), Positives = 221/332 (66%), Gaps = 11/332 (3%)
Query: 11 VIDPLFAGNFLGKDSDIVF----DYRQKVTRSFEYLQGDYYIAPVFMASLLCHIVKNYIA 66
++D LF G G + DY +R+F ++ +YI+P F+ + H+ KN++
Sbjct: 59 MVDSLFQGPGSGGGTHSAVLSSEDYLSTASRNFNNVEDGFYISPAFLDKMTIHVAKNFM- 117
Query: 67 HLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERY 126
L +KVPLILGIWGGKGQGK+FQ L ++ +GI P++MSAGELES AGEP KLIR+RY
Sbjct: 118 DLPKIKVPLILGIWGGKGQGKTFQCALAYKKLGISPIVMSAGELESGNAGEPAKLIRQRY 177
Query: 127 RTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIGQD 185
R AS V+ +GKM L IND+DAG GR G TQ TVNNQ+V TLMN++DNPT V +
Sbjct: 178 REASDSVK-KGKMCSLFINDLDAGAGRMGMGTQYTVNNQMVNATLMNIADNPTNVQLPGV 236
Query: 186 WRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITKD 245
++E I R+PI+ TGNDFST+YAPLIRDGRMEK+YW P ED + + ++++D + +
Sbjct: 237 YKEVQIP-RVPIVCTGNDFSTLYAPLIRDGRMEKYYWNPTREDRIGVCMGIFQEDNVNRG 295
Query: 246 EVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVFTP 305
EV +V FP Q++DF+GALR+R YD + +++ + GVENL +L+ R+ K VF
Sbjct: 296 EVEVLVDAFPGQSIDFFGALRARVYDDKVREFVKNT-GVENLSKRLINSREGKV--VFEK 352
Query: 306 PEKTVEALLESGYSLLREQQLIMETKLSKEYM 337
P ++ L++ G L EQ+ + +L++EYM
Sbjct: 353 PSMNLDILMKYGKFLTNEQENVKRVQLAEEYM 384
>gi|307111891|gb|EFN60125.1| hypothetical protein CHLNCDRAFT_133490 [Chlorella variabilis]
Length = 419
Score = 308 bits (790), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 154/332 (46%), Positives = 222/332 (66%), Gaps = 11/332 (3%)
Query: 11 VIDPLF-AGNFLGKDSDIVF---DYRQKVTRSFEYLQGDYYIAPVFMASLLCHIVKNYIA 66
++D LF G +G + + DY R+F ++ +YI+P F+ + H+ KN++
Sbjct: 74 MVDSLFQGGQGMGGTHNAILSSQDYLSTAQRNFNNIEDGFYISPAFLDKISIHVAKNFL- 132
Query: 67 HLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERY 126
L +KVPLILGIWGGKGQGK+FQ L ++ +GI P++MSAGELES AGEP KLIR+RY
Sbjct: 133 DLPKIKVPLILGIWGGKGQGKTFQCNLAYKKLGISPIVMSAGELESGNAGEPAKLIRQRY 192
Query: 127 RTASQVVQNQGKMSCLMINDIDAGLGRFGN-TQMTVNNQIVVGTLMNLSDNPTRVSIGQD 185
R AS +++ +G+MS L IND+DAG GR G+ TQ TVNNQ+V TLMN++DNPT V +
Sbjct: 193 REASDIIK-KGRMSSLFINDLDAGAGRMGDATQYTVNNQMVNATLMNIADNPTNVQLPGV 251
Query: 186 WRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITKD 245
++ +I R+PI+ TGNDFST+YAPLIRDGRMEK+YW P ED + + +++ D + +
Sbjct: 252 YKNEEIP-RVPIVCTGNDFSTLYAPLIRDGRMEKYYWNPTREDRVGVCMGIFQHDNVDRA 310
Query: 246 EVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVFTP 305
+V ++V FP Q++DF+GALR+R YD + +WI GVEN+G +L+ R+ K F
Sbjct: 311 DVETLVDAFPGQSIDFFGALRARVYDDKVREWIQGT-GVENIGKRLVNSREGKV--EFDK 367
Query: 306 PEKTVEALLESGYSLLREQQLIMETKLSKEYM 337
P + L+ G L+ EQ+ + +L+ EYM
Sbjct: 368 PPMPLSTLMNYGNLLVEEQENVKRVQLADEYM 399
>gi|428227229|ref|YP_007111326.1| ribulose 1,5-bisphosphate carboxylase small subunit [Geitlerinema
sp. PCC 7407]
gi|427987130|gb|AFY68274.1| ribulose 1,5-bisphosphate carboxylase small subunit [Geitlerinema
sp. PCC 7407]
Length = 415
Score = 306 bits (785), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 152/298 (51%), Positives = 212/298 (71%), Gaps = 6/298 (2%)
Query: 46 YYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIM 105
+Y++P F+ + HI KN++ L VKVPLILGI G KG+GKSFQ EL+F+ MGIEPV M
Sbjct: 3 FYVSPRFLDKVAVHITKNFL-DLPGVKVPLILGIHGRKGEGKSFQCELVFERMGIEPVHM 61
Query: 106 SAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRF-GNTQMTVNNQ 164
SAGELES AG+P +LIR RYR A + ++ +G+M LMIND+DAG GRF G TQ TVN Q
Sbjct: 62 SAGELESPDAGDPARLIRLRYREAGEYIRTRGRMCVLMINDLDAGAGRFDGGTQYTVNTQ 121
Query: 165 IVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQP 224
+V TLMN++DNPT V + + E + R+PI+ TGNDFST+YAPLIRDGRMEKFYW P
Sbjct: 122 LVNATLMNIADNPTNVQLPGSYDEKPLP-RVPILVTGNDFSTLYAPLIRDGRMEKFYWDP 180
Query: 225 NLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGV 284
+ ED + IV ++ DG+++ + +V TFP Q++DF+GALRSR YD + ++I ++ GV
Sbjct: 181 DYEDRVGIVSGIFSDDGLSRQDFERLVDTFPAQSIDFFGALRSRFYDEQVRRFIQEV-GV 239
Query: 285 ENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYMKNIDD 342
E + +LL ++ P F P T+E LLE GY +++EQ+ + ++L++EY + + D
Sbjct: 240 EQVSFRLLNSKEGA--PTFQKPRFTLERLLEFGYLMVQEQERVRTSRLAEEYNRVLMD 295
>gi|342360007|gb|AEL29575.1| chloroplast rubisco activase [Chlorella pyrenoidosa]
Length = 413
Score = 305 bits (782), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 147/309 (47%), Positives = 211/309 (68%), Gaps = 7/309 (2%)
Query: 30 DYRQKVTRSFEYLQGDYYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSF 89
DY R+F ++ +YI+P F+ + H+ KN++ L +KVPLILGIWGGKGQGK+F
Sbjct: 92 DYLSTAARNFNNIEDGFYISPAFLDKMSIHVAKNFM-DLPKIKVPLILGIWGGKGQGKTF 150
Query: 90 QTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDA 149
Q L ++ +GI P++MSAGELES AGEP KLIR+RYR AS +++ +G+M L IND+DA
Sbjct: 151 QCNLAYKKLGISPIVMSAGELESGNAGEPAKLIRQRYREASDIIK-KGRMCSLFINDLDA 209
Query: 150 GLGRFGN-TQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIY 208
G GR G+ TQ TVNNQ+V TLMN++D+PT V + ++ +I R+PI+ TGNDFST+Y
Sbjct: 210 GAGRMGDATQYTVNNQMVNATLMNIADSPTNVQLPGVYKNEEIP-RVPIVCTGNDFSTLY 268
Query: 209 APLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSR 268
APLIRDGRMEK+YW P ED + + +++ D + + +V +V FP Q++DF+GALR+R
Sbjct: 269 APLIRDGRMEKYYWNPTREDRIGVCMGIFQHDNVDRADVEKLVDAFPGQSIDFFGALRAR 328
Query: 269 TYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIM 328
YD + +WI GVEN+G +L+ R+ K F P + L++ G L+ EQ+ +
Sbjct: 329 VYDDKVREWITGT-GVENIGKRLINSREGK--VEFEKPSMNLSTLMQYGNMLVEEQENVK 385
Query: 329 ETKLSKEYM 337
+L+ EYM
Sbjct: 386 RVQLADEYM 394
>gi|145346050|ref|XP_001417509.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144577736|gb|ABO95802.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 415
Score = 305 bits (781), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 152/294 (51%), Positives = 212/294 (72%), Gaps = 6/294 (2%)
Query: 45 DYYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVI 104
++YI+P +M ++ H+ KN++ L +KVP+ILG+WGGKGQGK+FQ++LIF+ +GI P++
Sbjct: 107 NFYISPSYMDKVIVHVAKNFM-KLPKIKVPVILGVWGGKGQGKTFQSDLIFKKLGISPIV 165
Query: 105 MSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNN 163
MSAGELES AGEP KL+R+RYR AS +V+ +G+MS L IND+DAG GR G TQ TVNN
Sbjct: 166 MSAGELESGNAGEPAKLVRQRYREASDIVK-KGRMSTLFINDLDAGAGRMGGTTQYTVNN 224
Query: 164 QIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQ 223
Q+V TLMN++DNPT V + + +I R+PII TGNDFST+YAPL+RDGRM+KFYW
Sbjct: 225 QMVNATLMNIADNPTNVQLPGQYEVIEIP-RVPIIATGNDFSTLYAPLVRDGRMDKFYWS 283
Query: 224 PNLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGG 283
P ED + I + ++ DGI K++V +V TF Q++DF+GALRSR YD + +I ++ G
Sbjct: 284 PTREDRVGIANGIFMADGIEKEDVEVLVDTFEGQSIDFFGALRSRVYDDLVRDFILEV-G 342
Query: 284 VENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYM 337
E LG +L+ RK +E+ F PP+ T+E LL G L EQ+ I +L+ Y+
Sbjct: 343 YEALGPRLINPRKGEEVN-FNPPKMTLEVLLAYGKELENEQENIKRIQLADAYL 395
>gi|380707033|gb|AFD97617.1| rubisco activase (chloroplast) [Ammopiptanthus mongolicus]
Length = 439
Score = 305 bits (780), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 168/334 (50%), Positives = 226/334 (67%), Gaps = 12/334 (3%)
Query: 10 GVIDPLF-AGNFLGKDSDIVFDYRQKVTRSFEYLQGD----YYIAPVFMASLLCHIVKNY 64
G++D LF A + G ++ Y T EY + +YIAP FM L+ HI KN+
Sbjct: 92 GMVDSLFQAPSDAGTHYAVLSSYEYISTGLREYNLDNNVDGFYIAPAFMDKLVVHITKNF 151
Query: 65 IAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRE 124
+ L N+KVPLILGIWGGKGQGKSFQ EL+F MGI P++MSAGELES AGEP KL+R
Sbjct: 152 MT-LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLMRR 210
Query: 125 RYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIG 183
RYR A+ +++ +GKM L IN +DAG GR G TQ TVNNQ+V TLMN++DNPT V +
Sbjct: 211 RYREAADIIR-KGKMCALFINGLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTSVQLP 269
Query: 184 QDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGIT 243
+ + + + R+PII TGNDFST+YAPLIRDGRMEKFYW P +D + + ++ D IT
Sbjct: 270 GMYNKEE-SPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRVGVCKGIFRTDNIT 328
Query: 244 KDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVF 303
+D+V +V TFP Q++DF+GALR+R YD + KWI I GVE +G KL+ ++ P F
Sbjct: 329 EDDVVKLVDTFPGQSIDFFGALRARVYDDEVRKWIGGI-GVEGVGKKLVNSKEGP--PTF 385
Query: 304 TPPEKTVEALLESGYSLLREQQLIMETKLSKEYM 337
P T++ LLE G L++EQ+ + +L+++YM
Sbjct: 386 EQPSMTLQKLLEYGNMLVQEQENVKRVQLAEQYM 419
>gi|115392208|gb|ABI96906.1| chloroplast ribulose-1,5-bisphosphate carboxylase activase
[Triticum aestivum]
Length = 360
Score = 304 bits (778), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 156/319 (48%), Positives = 214/319 (67%), Gaps = 14/319 (4%)
Query: 10 GVIDPLFAGNFLGKDSDIVFDYRQKVTRS-----FEYLQGDYYIAPVFMASLLCHIVKNY 64
G++D LF + V + V++ F+ G +YIAP FM L+ H+ KN+
Sbjct: 49 GIVDSLFQAPTGDGTHEAVLSSYEYVSQGLKKYDFDNTMGGFYIAPAFMDKLVVHLSKNF 108
Query: 65 IAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRE 124
+ L N+K+P ILGIWGGKGQGKSFQ EL+F MGI P+++SAGELES AGEP KLIR+
Sbjct: 109 MT-LPNIKIPRILGIWGGKGQGKSFQCELVFAKMGINPIMLSAGELESGNAGEPAKLIRQ 167
Query: 125 RYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIG 183
RYR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ+V TLMN++D PT V +
Sbjct: 168 RYREAADMIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADAPTNVQLP 226
Query: 184 QDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGIT 243
+ + + R+PI+ TGNDFST+YAPLIRDGRMEKFYW P +D + + +++ D ++
Sbjct: 227 GMYNKEE-NPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVS 285
Query: 244 KDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPV- 302
+ V IV TFP Q++DF+GALR+R D + KW+ G+EN+G +L+ R + PV
Sbjct: 286 DESVVKIVDTFPGQSIDFFGALRARVNDDEVRKWVTST-GIENIGKRLVNSR---DGPVT 341
Query: 303 FTPPEKTVEALLESGYSLL 321
F P+ TVE LLE G+ L+
Sbjct: 342 FEQPKMTVEKLLEYGHMLV 360
>gi|159468147|ref|XP_001692244.1| rubisco activase [Chlamydomonas reinhardtii]
gi|38532373|gb|AAR23425.1| rubisco activase [Chlamydomonas reinhardtii]
gi|158278430|gb|EDP04194.1| rubisco activase [Chlamydomonas reinhardtii]
Length = 408
Score = 304 bits (778), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 153/332 (46%), Positives = 223/332 (67%), Gaps = 12/332 (3%)
Query: 11 VIDPLFAGNF-LGKDSDIVF---DYRQKVTRSFEYLQGDYYIAPVFMASLLCHIVKNYIA 66
++D LF G F G + V +Y + SF ++ +YI+P F+ + HI KN++
Sbjct: 65 MVDDLFQGGFGAGGTHNAVLSSQEYLSQSRASFNNIEDGFYISPAFLDKMTIHIAKNFM- 123
Query: 67 HLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERY 126
L +KVPLILGIWGGKGQGK+FQ L ++ +GI P++MSAGELES AGEP KLIR RY
Sbjct: 124 DLPKIKVPLILGIWGGKGQGKTFQCALAYKKLGIAPIVMSAGELESGNAGEPAKLIRTRY 183
Query: 127 RTASQVVQNQGKMSCLMINDIDAGLGRFGNT-QMTVNNQIVVGTLMNLSDNPTRVSIGQD 185
R AS +++ +G+M L IND+DAG GR G+T Q TVNNQ+V TLMN++DNPT V +
Sbjct: 184 REASDIIK-KGRMCSLFINDLDAGAGRMGDTTQYTVNNQMVNATLMNIADNPTNVQLPGV 242
Query: 186 WRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITKD 245
++ +I R+PI+ TGNDFST+YAPLIRDGRMEK+YW P ED + + ++++D + +
Sbjct: 243 YKNEEIP-RVPIVCTGNDFSTLYAPLIRDGRMEKYYWNPTREDRIGVCMGIFQEDNVQRR 301
Query: 246 EVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVFTP 305
EV ++V TFP Q++DF+GALR+R YD + +WI D GV+ +G +L+ R+ +P +
Sbjct: 302 EVENLVDTFPGQSIDFFGALRARVYDDMVRQWITDT-GVDKIGQQLVNARQKVAMPKVS- 359
Query: 306 PEKTVEALLESGYSLLREQQLIMETKLSKEYM 337
+ L++ G SL+ EQ+ + +L+ Y+
Sbjct: 360 --MDLNVLIKYGKSLVDEQENVKRVQLADAYL 389
>gi|384253108|gb|EIE26583.1| Rubisco activase [Coccomyxa subellipsoidea C-169]
Length = 421
Score = 304 bits (778), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 148/309 (47%), Positives = 215/309 (69%), Gaps = 7/309 (2%)
Query: 30 DYRQKVTRSFEYLQGDYYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSF 89
+Y + R+ ++ +YI+P F+ + H+ KN++ L +KVPLILGIWGGKGQGK+F
Sbjct: 104 EYLSQAQRTLNNIEDGFYISPPFLDKISIHVAKNFL-DLPKIKVPLILGIWGGKGQGKTF 162
Query: 90 QTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDA 149
Q L F+ + I P++MSAGELES AGEP KL+R+RYR AS V++ +GKMS L IND+DA
Sbjct: 163 QCNLAFKKLDINPIVMSAGELESGNAGEPAKLVRQRYREASDVIK-KGKMSSLFINDLDA 221
Query: 150 GLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIY 208
G GR G TQ TVNNQ+V TLMN++DNPT V + +++ +I R+P+I TGNDFST+Y
Sbjct: 222 GAGRMGAGTQYTVNNQMVNATLMNIADNPTNVQLPGVYKQEEIP-RVPVICTGNDFSTLY 280
Query: 209 APLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSR 268
APLIRDGRMEKFYW P+ +D + + +++ DG+ + +V +V TFP Q++DF+GALR+R
Sbjct: 281 APLIRDGRMEKFYWAPSRDDRVGVCMGIFQHDGVNRTDVEHLVDTFPGQSIDFFGALRAR 340
Query: 269 TYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIM 328
YD + +++ I G+EN+G +L+ R+ K F PE + LL+ G L+ EQ+ +
Sbjct: 341 VYDDKVREFVSTI-GLENIGKRLVNSREAK--VTFEKPEMDLNTLLKYGNLLVDEQENVK 397
Query: 329 ETKLSKEYM 337
+L+ Y+
Sbjct: 398 RVQLADSYL 406
>gi|132167|sp|P23489.1|RCA_CHLRE RecName: Full=Ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic; Short=RA; Short=RuBisCO activase; Flags:
Precursor
gi|167434|gb|AAA33091.1| ribulose 1,5-bisphosphate carboxylase/oxygenase activase
[Chlamydomonas reinhardtii]
gi|227783|prf||1710353A RuBisCO activase
Length = 408
Score = 304 bits (778), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 153/332 (46%), Positives = 223/332 (67%), Gaps = 12/332 (3%)
Query: 11 VIDPLFAGNF-LGKDSDIVF---DYRQKVTRSFEYLQGDYYIAPVFMASLLCHIVKNYIA 66
++D LF G F G + V +Y + SF ++ +YI+P F+ + HI KN++
Sbjct: 65 MVDDLFQGGFGAGGTHNAVLSSQEYLSQSRASFNNIEDGFYISPAFLDKMTIHIAKNFM- 123
Query: 67 HLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERY 126
L +KVPLILGIWGGKGQGK+FQ L ++ +GI P++MSAGELES AGEP KLIR RY
Sbjct: 124 DLPKIKVPLILGIWGGKGQGKTFQCALAYKKLGIAPIVMSAGELESGNAGEPAKLIRTRY 183
Query: 127 RTASQVVQNQGKMSCLMINDIDAGLGRFGNT-QMTVNNQIVVGTLMNLSDNPTRVSIGQD 185
R AS +++ +G+M L IND+DAG GR G+T Q TVNNQ+V TLMN++DNPT V +
Sbjct: 184 REASDIIK-KGRMCSLFINDLDAGAGRMGDTTQYTVNNQMVNATLMNIADNPTNVQLPGV 242
Query: 186 WRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITKD 245
++ +I R+PI+ TGNDFST+YAPLIRDGRMEK+YW P ED + + ++++D + +
Sbjct: 243 YKNEEIP-RVPIVCTGNDFSTLYAPLIRDGRMEKYYWNPTREDRIGVCMGIFQEDNVQRR 301
Query: 246 EVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVFTP 305
EV ++V TFP Q++DF+GALR+R YD + +WI D GV+ +G +L+ R+ +P +
Sbjct: 302 EVENLVDTFPGQSIDFFGALRARVYDDMVRQWITDT-GVDKIGQQLVNARQKVAMPKVS- 359
Query: 306 PEKTVEALLESGYSLLREQQLIMETKLSKEYM 337
+ L++ G SL+ EQ+ + +L+ Y+
Sbjct: 360 --MDLNVLIKYGKSLVDEQENVKRVQLADAYL 389
>gi|255075671|ref|XP_002501510.1| ribulose bisphosphate carboxylase/oxygenase activase,chloroplast
precursor [Micromonas sp. RCC299]
gi|226516774|gb|ACO62768.1| ribulose bisphosphate carboxylase/oxygenase activase,chloroplast
precursor [Micromonas sp. RCC299]
Length = 413
Score = 303 bits (776), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 155/333 (46%), Positives = 225/333 (67%), Gaps = 11/333 (3%)
Query: 11 VIDPLFAGNF-LGKDSDIVFDYRQKVTRSFEYLQG----DYYIAPVFMASLLCHIVKNYI 65
++D F G F LG + V V+ F+ + YYI+ FM HI KN++
Sbjct: 66 MVDSKFQGGFGLGGTHNAVMSSSDYVSDGFKDVSNMTDEGYYISKGFMDRFCVHIAKNFM 125
Query: 66 AHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRER 125
L +KVPLILG+WGGKGQGK+FQ+ LIF+ +G+ P++MSAGELES AGEP KLIR+R
Sbjct: 126 -DLPKIKVPLILGVWGGKGQGKTFQSMLIFKKLGVGPIVMSAGELESGNAGEPAKLIRQR 184
Query: 126 YRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIGQ 184
YR AS +++ +G+MS L IND+DAG GR G +TQ TVNNQ+V TLMNL+DNPT V +
Sbjct: 185 YREASDIIK-KGRMSTLFINDLDAGAGRMGGSTQYTVNNQMVNATLMNLADNPTNVQLPG 243
Query: 185 DWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITK 244
++ +I R+PII TGNDFST+YAPLIRDGRMEK+YW P+ ED + + +++ DG+ +
Sbjct: 244 QYQVEEIP-RVPIIATGNDFSTLYAPLIRDGRMEKYYWSPSFEDRVGVACGIFKADGVAE 302
Query: 245 DEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVFT 304
+V +V+TF Q++DF+GALR+R YD + +WI + G+E +G L+ ++ ++ F
Sbjct: 303 KDVEVLVRTFDGQSIDFFGALRARVYDDKVREWIRET-GIEAMGPLLVNPKRGSKV-TFE 360
Query: 305 PPEKTVEALLESGYSLLREQQLIMETKLSKEYM 337
PP +++ LL+ G +L EQ+ + +L+ Y+
Sbjct: 361 PPRMSLDILLQYGKALEMEQENVKRVQLADAYL 393
>gi|308802948|ref|XP_003078787.1| RuBisCO activase (IC) [Ostreococcus tauri]
gi|116057240|emb|CAL51667.1| RuBisCO activase (IC) [Ostreococcus tauri]
Length = 407
Score = 303 bits (775), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 149/294 (50%), Positives = 210/294 (71%), Gaps = 6/294 (2%)
Query: 45 DYYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVI 104
++YI+ +M ++ HI KN++ L +KVPLILG+WGGKGQGK+FQ++LIF+ +GI P++
Sbjct: 98 NFYISKSYMDKVVVHIAKNFM-QLPKIKVPLILGVWGGKGQGKTFQSDLIFRKLGINPIV 156
Query: 105 MSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNN 163
MSAGELES AGEP KL+R+RYR AS +V+ +G+MS L IND+DAG GR G TQ TVNN
Sbjct: 157 MSAGELESGNAGEPAKLVRQRYREASDIVK-KGRMSTLFINDLDAGAGRMGGTTQYTVNN 215
Query: 164 QIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQ 223
Q+V TLMN++DNPT V + + +I R+PII TGNDFST+YAPL+RDGRM+KFYW
Sbjct: 216 QMVNATLMNIADNPTNVQLPGQYEVIEIP-RVPIIATGNDFSTLYAPLVRDGRMDKFYWS 274
Query: 224 PNLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGG 283
P ED + I + ++ DG++ ++V +V TF Q++DF+GALR+R YD + +I + G
Sbjct: 275 PTFEDRVGIANGIFMADGVSPEDVEVLVSTFEGQSIDFFGALRARVYDDKVRDFILSV-G 333
Query: 284 VENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYM 337
+ LG +L+ RK +E+ VF PP T+E LL G + EQ+ I +L+ Y+
Sbjct: 334 YDQLGKRLINPRKGEEV-VFEPPAMTLEVLLAYGKEIENEQENIKRIQLADAYL 386
>gi|255078274|ref|XP_002502717.1| predicted protein [Micromonas sp. RCC299]
gi|226517982|gb|ACO63975.1| predicted protein [Micromonas sp. RCC299]
Length = 396
Score = 300 bits (768), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 149/298 (50%), Positives = 201/298 (67%), Gaps = 21/298 (7%)
Query: 1 MNIAVGARAGVIDPLFAGNF-----LGKDSDIVF-DYRQKVTRSFEYLQGDYYIAPVFMA 54
MN AVGAR GV+D +FAG LG DSDI R + RSF L G++++ F+
Sbjct: 99 MNTAVGARYGVVDDVFAGKNNSKFNLGADSDIASGKLRYTMERSFNNLVGEFHVPKQFVD 158
Query: 55 SLLCHIVKNYIAHLLN----------VKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVI 104
+ HI KN + N +VPLILGIWG KG GK+F EL +A+G+ PV+
Sbjct: 159 RVALHIAKNLLMDSTNPGVGENALGLTRVPLILGIWGSKGCGKTFNLELACKALGVHPVV 218
Query: 105 MSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQ 164
MSAGELE E AGEPG+LIR RYR A+++++ +GK +CL+INDIDAG+G F TQ TVN Q
Sbjct: 219 MSAGELEDEWAGEPGRLIRRRYRHAAEIMKVRGKATCLIINDIDAGVGWFKQTQATVNTQ 278
Query: 165 IVVGTLMNLSDNPTRVSIGQD-----WRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEK 219
+V+GTLMN+ D+P VS +D +R+ + R+PII TGND ST+YAPL+RDGRM+K
Sbjct: 279 MVMGTLMNICDHPNFVSNEEDDEIHAYRDDEYIRRVPIIITGNDLSTLYAPLLRDGRMDK 338
Query: 220 FYWQPNLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKW 277
FYW P EDI ++VH MY+ D + + V +V+ + +Q LDF+GA+RSR YD +I++W
Sbjct: 339 FYWSPTREDICDMVHAMYKDDDVPRATVERLVQAYSHQPLDFFGAIRSRMYDEAIARW 396
>gi|3687652|gb|AAC62207.1| rubisco activase precursor [Datisca glomerata]
Length = 373
Score = 299 bits (765), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 151/287 (52%), Positives = 199/287 (69%), Gaps = 9/287 (3%)
Query: 10 GVIDPLFAGNF-LGKDSDIVFDYRQKVTRSFEYLQGD---YYIAPVFMASLLCHIVKNYI 65
G++D LF G ++ Y T +YL + +YIAP FM L+ HI KN++
Sbjct: 91 GMVDSLFQAPMQTGTHYAVMSSYEYLSTGLRQYLDNNMDGFYIAPAFMDKLVVHITKNFM 150
Query: 66 AHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRER 125
L N+KVPLILGIWGGKGQGKSFQ EL+F MGI P++MSAGELES AGEP KLIR+R
Sbjct: 151 T-LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQR 209
Query: 126 YRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIGQ 184
R A+ +++ +GKMSCL IND+DAG GR G TQ TVNNQ+V TLMN++DNPT V +
Sbjct: 210 CREAADIIK-KGKMSCLFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPG 268
Query: 185 DWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITK 244
+ + + R+PII TGNDFST+YAPLIRDGRMEKFYW P ED + + ++ D + K
Sbjct: 269 MYNKEE-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCTGIFRSDNVAK 327
Query: 245 DEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKL 291
+++ +V TFP Q++DF+GALR+R YD + KWI + GV+++G L
Sbjct: 328 EDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGV-GVQDVGKSL 373
>gi|412985424|emb|CCO18870.1| predicted protein [Bathycoccus prasinos]
Length = 1026
Score = 298 bits (764), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 171/383 (44%), Positives = 227/383 (59%), Gaps = 46/383 (12%)
Query: 2 NIAVGARAGVIDPLFA-----GNF-LGKDSDIV---FDYRQKVTRSFEYLQGDYYIAPVF 52
N VGA+ G ID +FA G F LG DSDI +R + R F L GDY++ F
Sbjct: 118 NTNVGAKEGKIDDIFARNRGDGEFKLGADSDIANGDLRFRFQEVRQFNNLVGDYFVPEQF 177
Query: 53 MASLLCHIVKNYI--AHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGEL 110
+ + H+ KN++ A + VPLILG+WGGKG GK+F EL + +G+ P++ SAGEL
Sbjct: 178 IEKVALHVCKNFMCAAQPNSPNVPLILGVWGGKGCGKTFNLELACKKLGMMPIVTSAGEL 237
Query: 111 ESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTL 170
E E AG PG+LIR+RYR A +VV+ GKMSCL++NDIDAGLG F +TQ TVNNQ V GTL
Sbjct: 238 EDESAGGPGRLIRQRYRRAGEVVRVHGKMSCLIVNDIDAGLGWFKDTQQTVNNQTVCGTL 297
Query: 171 MNLSDNPTRVSIGQDWRE--SDI-TNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLE 227
MNL D+P VS+G++ RE S++ T RIPII TGND S +YAPL+RDGRMEK+YW P +
Sbjct: 298 MNLCDHPELVSLGEERREDGSNLQTVRIPIIVTGNDLSRLYAPLLRDGRMEKWYWDPQFD 357
Query: 228 DILNIVHRMYEKDGI-TKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWI-------- 278
DI+N+V +++ D + + D+ ++V FPNQ LDF+GA RS YD +I W+
Sbjct: 358 DIVNMVDALFKDDPLWSIDDTRALVAKFPNQPLDFFGATRSTVYDDAIRNWMIGNSKKKN 417
Query: 279 --DD-------------IGGVENLGNKLLKRRKDKELPVFTPPE--------KTVEALLE 315
DD GV+ GN P E T E+++
Sbjct: 418 GYDDQFGQVLMKNLALGTSGVDLFGNVGTDEAPSSAWKYHAPLEIVQSEKTQITTESVMA 477
Query: 316 SGYSLLREQQLIMETKLSKEYMK 338
+ L +Q L+ KLS EYMK
Sbjct: 478 AAKELSNQQDLVNSEKLSVEYMK 500
>gi|224140291|ref|XP_002323516.1| predicted protein [Populus trichocarpa]
gi|222868146|gb|EEF05277.1| predicted protein [Populus trichocarpa]
Length = 476
Score = 298 bits (763), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 158/337 (46%), Positives = 219/337 (64%), Gaps = 23/337 (6%)
Query: 10 GVIDPLFAGNFLGKDSDIV----FDYRQKVTRSFEY---LQGDYYIAPVFMASLLCHIVK 62
G++D LF +G + +DY K R ++ + G +YIA FM L+ HI K
Sbjct: 91 GMVDSLFQAP-MGTGTHYAVMSSYDYTSKGLRQYKLDNNMDG-FYIASSFMDKLVVHITK 148
Query: 63 NYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLI 122
N++ L N+K KGQGKSFQ EL+F MGI PV+MSAGELES AGEP KLI
Sbjct: 149 NFL-QLPNIKA--------SKGQGKSFQCELVFAKMGINPVVMSAGELESGNAGEPAKLI 199
Query: 123 RERYRTASQVVQNQGKMSCLMINDIDAGLGRF-GNTQMTVNNQIVVGTLMNLSDNPTRVS 181
R+RYR A+ +++ +GKM CL IND+DAG GRF G TQ TVNNQ+V TLMN++DNPT V
Sbjct: 200 RQRYREAADIIKKRGKMCCLFINDLDAGAGRFGGTTQYTVNNQMVNATLMNIADNPTSVQ 259
Query: 182 IGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDG 241
+ + + + R+PII TGNDFST+YAPLIRDGRMEKFYW P ED + + ++ D
Sbjct: 260 LPGMYNKEE-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCTGIFGSDN 318
Query: 242 ITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELP 301
+ ++++ +V TF Q++DF+GALR+R YD + KWI + GVEN+G +L+ ++ P
Sbjct: 319 VPREDIVKLVNTFHGQSIDFFGALRARAYDDEVRKWISGV-GVENVGKRLVNSKEGP--P 375
Query: 302 VFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYMK 338
+ P+ T+E LLE G L+ EQ+ + +LS +Y+K
Sbjct: 376 ILEQPKMTLEKLLEYGNMLVLEQENVKRVRLSDKYLK 412
>gi|411118859|ref|ZP_11391239.1| ribulose bisphosphate carboxylase small subunit [Oscillatoriales
cyanobacterium JSC-12]
gi|410710722|gb|EKQ68229.1| ribulose bisphosphate carboxylase small subunit [Oscillatoriales
cyanobacterium JSC-12]
Length = 507
Score = 296 bits (758), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 148/294 (50%), Positives = 210/294 (71%), Gaps = 6/294 (2%)
Query: 46 YYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIM 105
+YI+P F+ + HI KNY+ L NVKVPLILG+ G KG+GKSFQ EL+F+ MG+ V M
Sbjct: 62 FYISPRFLDKIAVHITKNYL-DLPNVKVPLILGVHGRKGEGKSFQCELVFERMGVNVVHM 120
Query: 106 SAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGN-TQMTVNNQ 164
SAGELES AG+P +LIR RYR A+++V+ +GKM+ LMINDIDAG GR TQ TVN Q
Sbjct: 121 SAGELESPDAGDPARLIRLRYREAAELVKVRGKMAVLMINDIDAGAGRVDQYTQYTVNTQ 180
Query: 165 IVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQP 224
+V GTLMN++DNPT V + + +S+ RIPII TGNDFST+Y PL+RDGRMEKFYW+P
Sbjct: 181 LVNGTLMNIADNPTNVQLPGSY-DSEPIQRIPIIVTGNDFSTLYQPLVRDGRMEKFYWEP 239
Query: 225 NLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGV 284
N +D + IV +++ D +++ ++ +V TFPNQA+DF+GALRSR +D I +I + G+
Sbjct: 240 NWDDRVGIVAGIFQVDPVSRADIEKLVDTFPNQAIDFFGALRSRLFDEQIRNFIHSV-GI 298
Query: 285 ENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYMK 338
E + +++ ++ P F P+ ++ L+E G ++ EQ+ + E+ L++EY K
Sbjct: 299 ERVSQRVVNSKEAP--PEFKKPDFSLPHLIEVGNQMVYEQKRVQESGLAQEYNK 350
>gi|428299641|ref|YP_007137947.1| ribulose 1,5-bisphosphate carboxylase small subunit [Calothrix sp.
PCC 6303]
gi|428236185|gb|AFZ01975.1| ribulose 1,5-bisphosphate carboxylase small subunit [Calothrix sp.
PCC 6303]
Length = 425
Score = 295 bits (755), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 147/296 (49%), Positives = 209/296 (70%), Gaps = 6/296 (2%)
Query: 46 YYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIM 105
YYIAP F+ L HI KN++ ++ V+VPLILG+ G KG+GKSFQ EL+F+ MGIE ++
Sbjct: 3 YYIAPRFLDKLAVHITKNFL-NIPGVRVPLILGVHGRKGEGKSFQCELVFERMGIEVTLI 61
Query: 106 SAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGN-TQMTVNNQ 164
S GELES AG+P +LIR RYR +++V+ +GKM LMIND+DAG GRF TQ TVN Q
Sbjct: 62 SGGELESPDAGDPARLIRLRYRETAELVKVRGKMCVLMINDLDAGAGRFDEGTQYTVNTQ 121
Query: 165 IVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQP 224
+V TLMN++DNPT V + + +S R+PII TGNDFST+YAPLIRDGRMEKFYW+P
Sbjct: 122 LVNATLMNIADNPTDVQLPGSY-DSTPLRRVPIIVTGNDFSTLYAPLIRDGRMEKFYWEP 180
Query: 225 NLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGV 284
+ +D + +V ++ DG+++ EV +V TFPNQ++DFY A+RSR YD + +I DI GV
Sbjct: 181 DRDDKVGVVEGIFGDDGLSRREVAQLVDTFPNQSIDFYSAMRSRLYDEQVLHFIHDI-GV 239
Query: 285 ENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYMKNI 340
EN+ +++ + P+F P+ ++ LLE G ++ EQQ + ++L ++Y + +
Sbjct: 240 ENVSQRVVN--SAEAAPIFGKPDFSLSRLLEMGNFMVSEQQHVENSQLVEQYNRGL 293
>gi|149941202|emb|CAO02533.1| putative rubisco activase [Vigna unguiculata]
Length = 251
Score = 295 bits (755), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 142/245 (57%), Positives = 184/245 (75%), Gaps = 6/245 (2%)
Query: 36 TRSFEYLQGDYYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIF 95
T +F+ ++ YYIAP FM L+ HI KN++ L N+KVPLILGIWGGKGQGKSFQ EL+F
Sbjct: 9 TYNFDNMKDGYYIAPAFMDKLVVHITKNFMT-LPNIKVPLILGIWGGKGQGKSFQCELVF 67
Query: 96 QAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG 155
MGI P++MSAGELES AGEP KLIR+RYR A+ +++ +GKM L IND+DAG GR G
Sbjct: 68 AKMGINPIVMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCALFINDLDAGAGRLG 126
Query: 156 -NTQMTVNNQIVVGTLMNLSDNPTRVSI-GQDWRESDITNRIPIIFTGNDFSTIYAPLIR 213
TQ TVNNQ+V TLMN++DNPT V + G +E ++ R+PII TGNDFST+YAPLIR
Sbjct: 127 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENL--RVPIIVTGNDFSTLYAPLIR 184
Query: 214 DGRMEKFYWQPNLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRS 273
DGRMEKFYW P +D + + ++ DG+ ++EV +V TFP Q++DF+GALR+R YD
Sbjct: 185 DGRMEKFYWAPTRDDRVGVCKGIFRTDGVPEEEVTKLVDTFPGQSIDFFGALRARVYDDE 244
Query: 274 ISKWI 278
+ KW+
Sbjct: 245 VRKWV 249
>gi|145353113|ref|XP_001420873.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144581108|gb|ABO99166.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 342
Score = 295 bits (754), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 152/309 (49%), Positives = 202/309 (65%), Gaps = 30/309 (9%)
Query: 2 NIAVGARAGVIDPLFAGNF-----LGKDSDIV---FDYRQKVTRSFEYLQGDYYIAPVFM 53
N VGAR GV+D +F N LG DSDI YR + R F+ L GDY+ P FM
Sbjct: 35 NTNVGARQGVVDDVFTRNATGEFQLGADSDIASGELRYRYQEARKFKNLVGDYHCPPAFM 94
Query: 54 ASLLCHIVKNYI--AHLLNVK--------------VPLILGIWGGKGQGKSFQTELIFQA 97
+ H+VKN++ L +V+ PLILG+WGGKG GKSF EL +A
Sbjct: 95 EKVSGHLVKNFLFGGGLRHVREMTNEAGVVVQPPNTPLILGVWGGKGCGKSFNLELACKA 154
Query: 98 MGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNT 157
MG+ P+I SAGELE E AG PG+LIRERY+ A ++++ G MSCL+IND+DAG+G F +T
Sbjct: 155 MGVTPIITSAGELEDENAGAPGRLIRERYKRAGEILRRTGVMSCLIINDVDAGIGWFKDT 214
Query: 158 QMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDI---TNRIPIIFTGNDFSTIYAPLIRD 214
Q TVNNQ V GTLMNL D+P VS+G+D E T R+PII TGND ST+YAPL+RD
Sbjct: 215 QHTVNNQTVCGTLMNLCDHPELVSLGEDRGEDGKNLQTARVPIIVTGNDLSTVYAPLLRD 274
Query: 215 GRMEKFYWQPNLEDILNIVHRMYEKDGI--TKDEVGSIVKTFPNQALDFYGALRSRTYDR 272
GRM+K+YW P+ +DI +IVH ++ KD + + D +V FP Q LDF+GA R++ YD
Sbjct: 275 GRMDKWYWNPSRDDICDIVHALF-KDEVDWSPDATARLVNAFPGQPLDFFGAARAKVYDD 333
Query: 273 SISKWIDDI 281
++S+W+ ++
Sbjct: 334 AVSRWMCEV 342
>gi|410927414|gb|AFV93495.1| chloroplast ribulose bisphosphate carboxylase/oxygenase activase
beta1, partial [Gossypium barbadense]
Length = 296
Score = 294 bits (752), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 140/238 (58%), Positives = 178/238 (74%), Gaps = 4/238 (1%)
Query: 46 YYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIM 105
+YIAP FM L+ HI KNY+ L N+KVPLILGIWGGKGQGKSFQ EL+F MGI P++M
Sbjct: 59 FYIAPAFMDKLVVHITKNYMT-LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 117
Query: 106 SAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQ 164
SAGELES AGEP KLIR+RYR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ
Sbjct: 118 SAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQ 176
Query: 165 IVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQP 224
+V TLMN++DNPT V + + + + R+PII TGNDFST+YAPLIRDGRMEKFYW P
Sbjct: 177 MVNATLMNIADNPTNVQLPGMYNKEE-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 235
Query: 225 NLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIG 282
ED + + ++ D + D++ +V TFP Q++DF+GALR+R YD + KWI ++G
Sbjct: 236 TREDRIGVCTGIFRTDNVPVDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWIGEVG 293
>gi|3687676|gb|AAC62215.1| rubisco activase precursor [Datisca glomerata]
Length = 244
Score = 293 bits (750), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 141/247 (57%), Positives = 183/247 (74%), Gaps = 5/247 (2%)
Query: 46 YYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIM 105
+YIAP FM L+ HI KN++ N+KVPLILGIWGGKGQGKSFQ EL+F MGI P++M
Sbjct: 2 FYIAPAFMDKLVVHITKNFMT-FPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 60
Query: 106 SAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQ 164
SAGELES AGEP KLIR+R R A+ +++ +GKMSCL IND+DAG GR G TQ TVNNQ
Sbjct: 61 SAGELESGNAGEPAKLIRQRCREAADIIK-KGKMSCLFINDLDAGAGRLGGTTQYTVNNQ 119
Query: 165 IVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQP 224
+V TLMN++DNPT V + + + + R+PII TGNDFST+YAPLIRDGRMEKFYW P
Sbjct: 120 MVNATLMNIADNPTNVQLPGMYNKEE-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 178
Query: 225 NLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGV 284
ED + + ++ D + K+++ +V TFP Q++DF+GALR+R YD + KWI + GV
Sbjct: 179 TREDRIGVCTGIFRSDNVAKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGV-GV 237
Query: 285 ENLGNKL 291
+++G L
Sbjct: 238 QDVGKSL 244
>gi|296086200|emb|CBI31641.3| unnamed protein product [Vitis vinifera]
Length = 411
Score = 293 bits (749), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 140/253 (55%), Positives = 186/253 (73%), Gaps = 5/253 (1%)
Query: 46 YYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIM 105
+YIAP FM L+ HI KN++ L N+KVPLILGIWGGKGQGKSFQ EL+F MGI P++M
Sbjct: 132 FYIAPAFMDKLVVHITKNFMT-LPNIKVPLILGIWGGKGQGKSFQCELVFSKMGINPIMM 190
Query: 106 SAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQ 164
SAGELES AGEP KLIR+RYR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ
Sbjct: 191 SAGELESGNAGEPAKLIRQRYREAADIIR-KGKMCCLFINDLDAGAGRLGGTTQYTVNNQ 249
Query: 165 IVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQP 224
+V TLMN++DNPT V + + + + R+P+I TGNDFST+YAPLIRDGRMEKFYW P
Sbjct: 250 MVNATLMNIADNPTNVQLPGMYNKEE-NPRVPVIVTGNDFSTLYAPLIRDGRMEKFYWAP 308
Query: 225 NLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGV 284
ED + + ++ D + +++ +V TFP Q++DF+GALR+R YD + WI I GV
Sbjct: 309 TREDRIGVCTGIFRTDNVPVEDIVKLVDTFPGQSIDFFGALRARVYDDMVRDWIAGI-GV 367
Query: 285 ENLGNKLLKRRKD 297
+ G+ L++ +++
Sbjct: 368 DTYGSMLVQEQEN 380
>gi|410927420|gb|AFV93496.1| chloroplast ribulose bisphosphate carboxylase/oxygenase activase
beta2, partial [Gossypium barbadense]
Length = 296
Score = 292 bits (748), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 145/261 (55%), Positives = 186/261 (71%), Gaps = 16/261 (6%)
Query: 35 VTRSFEYL-QG-----------DYYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGG 82
V S+EYL QG +YIAP FM L+ HI KN++ L N+KVPLILG+WGG
Sbjct: 36 VMSSYEYLSQGLRTYDLDNNMDGFYIAPAFMDKLVVHITKNFMT-LPNIKVPLILGVWGG 94
Query: 83 KGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCL 142
KGQGKSFQ EL+F MGI P++MSAGELES AGEP KLIR+RYR A+ +++ +GKM CL
Sbjct: 95 KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCL 153
Query: 143 MINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTG 201
IND+DAG GR G TQ TVNNQ+V TLMN++DNPT V + + + + R+PII TG
Sbjct: 154 FINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEE-NPRVPIIVTG 212
Query: 202 NDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDF 261
NDFST+YAPLIRDGRMEKFYW P ED + + ++ D + D++ +V TFP Q++DF
Sbjct: 213 NDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCTGIFRTDNVPVDDLVKLVDTFPGQSIDF 272
Query: 262 YGALRSRTYDRSISKWIDDIG 282
+GALR+R YD + KWI ++G
Sbjct: 273 FGALRARVYDDEVRKWIGEVG 293
>gi|149941206|emb|CAO02535.1| putative rubisco activase [Vigna unguiculata]
Length = 244
Score = 291 bits (746), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 142/249 (57%), Positives = 185/249 (74%), Gaps = 7/249 (2%)
Query: 42 LQGDYYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIE 101
++ YYIAP FM L+ HI KN++ L N+KVPLILGIWGGKGQGKSFQ EL+F MGI
Sbjct: 1 MKDGYYIAPAFMDKLVVHITKNFMT-LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGIN 59
Query: 102 PVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMT 160
P++MSAGELES AGEP KLIR+RYR A+ +++ +GKM L IND+DAG GR G TQ T
Sbjct: 60 PIVMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCALFINDLDAGAGRLGGTTQYT 118
Query: 161 VNNQIVVGTLMNLSDNPTRVSI-GQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEK 219
VNNQ+V TLMN++DNPT V + G +E ++ R+PII TGNDFST+YAPLIRDGRMEK
Sbjct: 119 VNNQMVNATLMNIADNPTNVQLPGMYNKEENL--RVPIIVTGNDFSTLYAPLIRDGRMEK 176
Query: 220 FYWQPNLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWID 279
FYW P +D + + ++ DG+ + EV +V TFP Q++DF+GALR++ YD + KW+
Sbjct: 177 FYWAPTRDDRVGVCKGIFRTDGVPEKEVTKLVDTFPGQSIDFFGALRAKVYDDEVRKWVS 236
Query: 280 DIGGVENLG 288
+ GV+ +G
Sbjct: 237 GV-GVDGIG 244
>gi|220909662|ref|YP_002484973.1| ribulose bisphosphate carboxylase small chain [Cyanothece sp. PCC
7425]
gi|219866273|gb|ACL46612.1| ribulose bisphosphate carboxylase small chain [Cyanothece sp. PCC
7425]
Length = 423
Score = 290 bits (743), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 153/294 (52%), Positives = 203/294 (69%), Gaps = 6/294 (2%)
Query: 46 YYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIM 105
YYIAP F+ L HI KNY+ L NVKVPLILGI G KG+GK+F EL+F+ MGI V M
Sbjct: 3 YYIAPRFLDKLSVHITKNYL-DLPNVKVPLILGIHGRKGEGKTFMCELVFKRMGIGVVYM 61
Query: 106 SAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQ 164
SAGELES AG+P +LIR RYR A + + G+M+ LMIND+DAG+GR TQ TVN Q
Sbjct: 62 SAGELESPDAGDPSRLIRLRYREAGEWSKVNGRMAALMINDVDAGIGRVDETTQYTVNTQ 121
Query: 165 IVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQP 224
+V TLMN++DNPT V + + + + T RIPII TGNDFST+YAPLIRDGRMEKFYW+P
Sbjct: 122 LVNATLMNIADNPTNVQLPGSY-DQEPTRRIPIILTGNDFSTMYAPLIRDGRMEKFYWEP 180
Query: 225 NLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGV 284
+ D L IV ++ D I E+ +V +FP+Q++DF+GALRSR YD I + I ++ G+
Sbjct: 181 DRSDRLGIVQGIFALDQIPDPEIEKLVDSFPDQSIDFFGALRSRLYDEQIRQLIQEV-GI 239
Query: 285 ENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYMK 338
E + +++ + LP F P ++ L+E G ++REQQ I E +LS+EY +
Sbjct: 240 ERISPRVVN--SAEPLPEFRRPNFSLPHLIEIGQLMVREQQRIRELRLSEEYNR 291
>gi|443313470|ref|ZP_21043081.1| ribulose bisphosphate carboxylase small subunit [Synechocystis sp.
PCC 7509]
gi|442776413|gb|ELR86695.1| ribulose bisphosphate carboxylase small subunit [Synechocystis sp.
PCC 7509]
Length = 498
Score = 289 bits (740), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 151/298 (50%), Positives = 203/298 (68%), Gaps = 6/298 (2%)
Query: 46 YYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIM 105
YYI+P F+ L HI KN++ L V+VPLILGI G KG+GKSFQ EL+F+ MGIE + M
Sbjct: 3 YYISPSFLDKLAVHITKNFL-ELPGVRVPLILGIHGRKGEGKSFQCELVFERMGIEAIHM 61
Query: 106 SAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGN-TQMTVNNQ 164
SAGELES AG+PG+L+R RYR AS++ + +GKM LMIND+DAG GRF TQ TVN Q
Sbjct: 62 SAGELESPDAGDPGRLVRLRYREASELSKVRGKMCVLMINDLDAGAGRFDRGTQYTVNTQ 121
Query: 165 IVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQP 224
+V GTLMN++DNPT V + + +S RIPII TGNDFST+YAPLIRDGRMEKF+W+P
Sbjct: 122 LVNGTLMNIADNPTDVQLPGSY-DSTPLQRIPIIVTGNDFSTLYAPLIRDGRMEKFFWEP 180
Query: 225 NLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGV 284
N +D + IV ++E DG+ K ++ +V TF NQ +DF+ ALRSR YD I +I G
Sbjct: 181 NRDDKVGIVSGIFEPDGLPKRDIEKLVDTFLNQPIDFFSALRSRIYDEQIRDFIHTT-GF 239
Query: 285 ENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYMKNIDD 342
E + +++ + P F P + L+E G +++EQQ + + L +EY + + D
Sbjct: 240 EKVSLRVVN--STEAAPTFAKPNFQLPRLIEYGNLMVKEQQRVENSGLVREYNQVLQD 295
>gi|428310574|ref|YP_007121551.1| ribulose bisphosphate carboxylase small subunit [Microcoleus sp.
PCC 7113]
gi|428252186|gb|AFZ18145.1| ribulose bisphosphate carboxylase small subunit [Microcoleus sp.
PCC 7113]
Length = 437
Score = 289 bits (739), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 149/292 (51%), Positives = 203/292 (69%), Gaps = 6/292 (2%)
Query: 46 YYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIM 105
YYI+P F+ L HI KNY+ L V+VPLILGI G KG+GKSFQ EL+F+ MG+E V M
Sbjct: 3 YYISPRFLNKLSVHITKNYL-DLPGVRVPLILGIHGRKGEGKSFQCELVFERMGVEAVHM 61
Query: 106 SAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGN-TQMTVNNQ 164
SAGELES AG+P +LIR RYR A+++++ +GKM+ LMIND+DAG GRF TQ TVN Q
Sbjct: 62 SAGELESPDAGDPARLIRLRYREAAELIRVRGKMAVLMINDLDAGAGRFDQGTQYTVNTQ 121
Query: 165 IVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQP 224
+V GTLMN++DNPT V + + +S +R+PI+ TGNDFST+YAPLIRDGRMEKFYW+P
Sbjct: 122 LVNGTLMNIADNPTDVQLPGSY-DSTPLHRVPILVTGNDFSTLYAPLIRDGRMEKFYWEP 180
Query: 225 NLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGV 284
+ ED + IV ++ +DG+ + ++ +V TFP Q +DF+ ALRSR YD I ++I I G
Sbjct: 181 DREDRIGIVSGIFSEDGLPRQQIEQLVDTFPGQPIDFFSALRSRIYDEQILQFIQKI-GF 239
Query: 285 ENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEY 336
E + ++++ +E P F P + L+E G L EQ+ + L +EY
Sbjct: 240 ERISSRIVN--SAEEAPKFPKPNFNLSRLIEFGNLLRGEQKQVENMGLVREY 289
>gi|332710946|ref|ZP_08430882.1| ribulose 1,5-bisphosphate carboxylase small subunit [Moorea
producens 3L]
gi|332350260|gb|EGJ29864.1| ribulose 1,5-bisphosphate carboxylase small subunit [Moorea
producens 3L]
Length = 448
Score = 289 bits (739), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 147/292 (50%), Positives = 205/292 (70%), Gaps = 6/292 (2%)
Query: 46 YYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIM 105
YYI+P F+ L HI KN++ + +V+VPLILGI G KG+GKSFQ EL+F+ MGIE V M
Sbjct: 5 YYISPRFIDKLAVHITKNFL-DIPHVRVPLILGIHGRKGEGKSFQCELVFERMGIEAVHM 63
Query: 106 SAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGN-TQMTVNNQ 164
S+GELES AG+P +LIR RYR +++++ +GKM LMIND+DAG GRF TQ TVN Q
Sbjct: 64 SSGELESPDAGDPARLIRLRYRETAEMIRVKGKMCVLMINDLDAGAGRFDERTQYTVNTQ 123
Query: 165 IVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQP 224
+V GTLMN++DNPT V + + +S +R+PII TGNDFST+YAPL RDGRM KFYW+P
Sbjct: 124 LVHGTLMNIADNPTNVQLPGSY-DSQPIHRVPIIVTGNDFSTLYAPLTRDGRMSKFYWEP 182
Query: 225 NLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGV 284
N ED + IV ++ DG++ E+ ++ TF NQA+DF+ ALRSR YD I K+I DI G+
Sbjct: 183 NREDRIGIVSGIFHGDGLSSGEIEQLIDTFDNQAIDFFSALRSRIYDEQIRKFIYDI-GI 241
Query: 285 ENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEY 336
+ + ++++ ++ P F P ++ L+E G + EQQ + + L++EY
Sbjct: 242 DRVSSRVVNSKQGP--PKFETPNFSISRLIEFGELIKAEQQRLELSGLAREY 291
>gi|427419082|ref|ZP_18909265.1| ribulose bisphosphate carboxylase small subunit [Leptolyngbya sp.
PCC 7375]
gi|425761795|gb|EKV02648.1| ribulose bisphosphate carboxylase small subunit [Leptolyngbya sp.
PCC 7375]
Length = 428
Score = 288 bits (738), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 146/297 (49%), Positives = 209/297 (70%), Gaps = 7/297 (2%)
Query: 46 YYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIM 105
YYI+P F+ +L HI KN++ L VK+PLI GI G KG+GK+FQ EL+++ MG+ V +
Sbjct: 3 YYISPRFLNALAVHITKNFL-ELPQVKLPLIFGIHGRKGEGKTFQCELVYKRMGVNVVHI 61
Query: 106 SAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRF-GNTQMTVNNQ 164
S GELES AG+P +LIR RYR A+ +V+ +G+M+ LMIND+DAG GRF G TQ TVN Q
Sbjct: 62 SGGELESPDAGDPARLIRLRYREAADLVKIRGEMAVLMINDLDAGAGRFDGMTQYTVNTQ 121
Query: 165 IVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQP 224
+V TLMN++DNPT V + + E+ + RIPI+ TGNDF+T+YAPL+RDGRM+KFYW+P
Sbjct: 122 LVNNTLMNIADNPTNVQLPGSYDETPLP-RIPIVVTGNDFATLYAPLVRDGRMQKFYWEP 180
Query: 225 NLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGV 284
N +D L IV ++ D ++++++ ++V TFPNQA+DFYGALRS+ YD I +I + GV
Sbjct: 181 NRDDRLGIVGGIFSPDDLSRNDIETLVDTFPNQAIDFYGALRSQIYDEQIIDFIHRV-GV 239
Query: 285 ENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYMKNID 341
EN+ ++ K P F P+ + L+E G L+REQ+ + E L +EY + ++
Sbjct: 240 ENVSRNVV---NTKTPPSFKKPDFRIGHLIEVGQRLVREQRRLQEMGLVQEYNQALN 293
>gi|434391832|ref|YP_007126779.1| ribulose 1,5-bisphosphate carboxylase small subunit [Gloeocapsa sp.
PCC 7428]
gi|428263673|gb|AFZ29619.1| ribulose 1,5-bisphosphate carboxylase small subunit [Gloeocapsa sp.
PCC 7428]
Length = 462
Score = 288 bits (737), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 145/292 (49%), Positives = 206/292 (70%), Gaps = 6/292 (2%)
Query: 46 YYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIM 105
YYI+P F+ L HI KN++ L ++VPLILGI G KG+GK+FQ EL+F+ MGIE + +
Sbjct: 3 YYISPRFLDKLAVHITKNFL-DLPGIRVPLILGIHGRKGEGKTFQCELVFERMGIEVIHI 61
Query: 106 SAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGN-TQMTVNNQ 164
S GELES AG+P +LIR RYR A+++++ +GKM LMIND+DAG GRF TQ TVN Q
Sbjct: 62 SGGELESPDAGDPARLIRLRYREAAELIKVRGKMVALMINDLDAGAGRFDEGTQYTVNTQ 121
Query: 165 IVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQP 224
+V TLMN++DNPT V + + +S +R+PII TGNDFST+YAPLIR+GRMEKFYW+P
Sbjct: 122 LVNATLMNIADNPTDVQLPGSY-DSTPLHRVPIIVTGNDFSTLYAPLIREGRMEKFYWEP 180
Query: 225 NLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGV 284
+ +D + IV ++ +DG++ EV +V FP+QA+DF+ ALRSR YD I ++I + G+
Sbjct: 181 DRDDKIGIVGGIFAEDGLSAQEVTQLVDAFPDQAIDFFSALRSRVYDEQIRRFIHET-GI 239
Query: 285 ENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEY 336
E + +++ + PVF P+ + LLESG +++EQQ + ++L EY
Sbjct: 240 ERVSLRVVNSTEGP--PVFQKPDFRLSHLLESGNFMVQEQQRVESSRLVHEY 289
>gi|254422770|ref|ZP_05036488.1| ribulose bisphosphate carboxylase, small subunit, putative
[Synechococcus sp. PCC 7335]
gi|196190259|gb|EDX85223.1| ribulose bisphosphate carboxylase, small subunit, putative
[Synechococcus sp. PCC 7335]
Length = 455
Score = 287 bits (734), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 146/292 (50%), Positives = 204/292 (69%), Gaps = 7/292 (2%)
Query: 46 YYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIM 105
YYIAP F+ L HI KNY+ L VKVPLILGI G KG+GK+FQ EL+F+ MG+E V +
Sbjct: 3 YYIAPRFLNKLAVHITKNYL-DLPQVKVPLILGIHGRKGEGKTFQCELVFERMGVEVVHI 61
Query: 106 SAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGN-TQMTVNNQ 164
S GELES AG+P +LIR RYR A+++V+ +G+M+ LMIND+DAG GRF TQ TVN Q
Sbjct: 62 SGGELESPDAGDPARLIRLRYREAAELVRVRGRMAVLMINDLDAGAGRFDRMTQYTVNTQ 121
Query: 165 IVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQP 224
+V TLMN++DNPT V + + E + RIPII TGNDF+T+YAPLIRDGRM+KFYWQP
Sbjct: 122 LVNNTLMNIADNPTNVQLPGSYDEKALP-RIPIIATGNDFATLYAPLIRDGRMQKFYWQP 180
Query: 225 NLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGV 284
+ ED + IV M+ DG++ +++ +VK F +QA+DF+GA+RS+ YD I+++I+ + G+
Sbjct: 181 SEEDRVGIVGGMFAGDGLSAEDIEQLVKQFKDQAVDFFGAVRSQLYDEQITRFIEQV-GI 239
Query: 285 ENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEY 336
E + ++ + P F P T++ L+ +G +L+ EQ + L EY
Sbjct: 240 EKVATNVV---NTPQKPTFNRPHFTLDHLVAAGNTLVEEQDRVRTMGLVNEY 288
>gi|414076620|ref|YP_006995938.1| ribulose bisphosphate carboxylase activase [Anabaena sp. 90]
gi|413970036|gb|AFW94125.1| ribulose bisphosphate carboxylase activase [Anabaena sp. 90]
Length = 407
Score = 286 bits (733), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 144/292 (49%), Positives = 204/292 (69%), Gaps = 6/292 (2%)
Query: 46 YYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIM 105
YYIAP F+ L HI KN++ ++ ++VPLILGI G KG+GK+FQ EL+F+ MGIE ++
Sbjct: 3 YYIAPSFLDKLAVHITKNFL-NIPGIRVPLILGIHGRKGEGKTFQCELVFEKMGIEVTLI 61
Query: 106 SAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGN-TQMTVNNQ 164
S GELES AG+P +LIR RYR +++++ +GKM LMIND+DAG GRF TQ TVN Q
Sbjct: 62 SGGELESPDAGDPARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEGTQYTVNTQ 121
Query: 165 IVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQP 224
+V TLMN++DNPT V + + +S+ R+PII TGNDFST+YAPLIRDGRM+KFYW+P
Sbjct: 122 LVNATLMNIADNPTDVQLPGSY-DSNPLCRVPIIVTGNDFSTLYAPLIRDGRMDKFYWEP 180
Query: 225 NLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGV 284
N +D + IV ++ +DG+++ E+ V TFP+Q++DF+ ALRSR YD I +I I G
Sbjct: 181 NRDDKVGIVGGIFAEDGLSQKEIAQFVDTFPHQSIDFFSALRSRIYDEQIRHFIHKI-GF 239
Query: 285 ENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEY 336
EN+ +++ + P F P+ T+ L+ESG ++ EQ+ + + L EY
Sbjct: 240 ENVSLRVVNSLEGP--PAFKKPDFTLSHLIESGKFMVGEQKRVETSHLVDEY 289
>gi|145346081|ref|XP_001417523.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144577750|gb|ABO95816.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 381
Score = 286 bits (733), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 152/339 (44%), Positives = 225/339 (66%), Gaps = 13/339 (3%)
Query: 8 RAGVIDPLFAGNFLGKDSDIVF-DYRQKVTRSFEYLQGDYYIAPVFMASLLCHIVKNYIA 66
R+GV + LF G+ LG D+D+ ++R++ R+F L G +++ F + H+VKN +
Sbjct: 48 RSGVEEELFKGSVLGVDADVATGEHREREFRTFAALDG-FHVPERFAERVATHVVKNLLK 106
Query: 67 H--LLNVKVP-LILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIR 123
L P LILGIWG KG GK+ EL + MG++P++ SAGELE AGEPG ++R
Sbjct: 107 DKGALGATSPALILGIWGHKGCGKTMNVELACKKMGLQPIVTSAGELEDSTAGEPGAMLR 166
Query: 124 ERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIG 183
RY TA++ ++ GK+SCL+INDIDAG+G+F + TVNNQI GTLMN+ DNPT VS G
Sbjct: 167 RRYLTAARAMRETGKLSCLIINDIDAGIGKFKDDLGTVNNQITHGTLMNICDNPTIVSEG 226
Query: 184 QDWR-ESDITN-RIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDG 241
WR +S TN R+PII TGNDFS +YAPL RDGRM+ + W+P ++++ ++H M + DG
Sbjct: 227 LVWRTDSKSTNARVPIIVTGNDFSRLYAPLTRDGRMDLWMWEPTSQELVEMIHAMMKDDG 286
Query: 242 ITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKL--LKRRKDKE 299
+T ++V TFPNQ LDF+GALR+R YD ++S ++ ++ G++ L + L L R+ +
Sbjct: 287 LTTACCETLVATFPNQPLDFFGALRARVYDDAVSDFVFNV-GLDGLNDSLVGLDERRRLK 345
Query: 300 LPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYMK 338
L T T+E LL G +++ EQ+ + +L++EYM+
Sbjct: 346 LGDVT---ITLERLLACGRNVVGEQENVNNIQLAREYMR 381
>gi|113475266|ref|YP_721327.1| ribulose 1,5-bisphosphate carboxylase small subunit [Trichodesmium
erythraeum IMS101]
gi|110166314|gb|ABG50854.1| ribulose 1,5-bisphosphate carboxylase small subunit [Trichodesmium
erythraeum IMS101]
Length = 423
Score = 286 bits (732), Expect = 9e-75, Method: Compositional matrix adjust.
Identities = 145/295 (49%), Positives = 206/295 (69%), Gaps = 6/295 (2%)
Query: 46 YYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIM 105
YYI+P F+ L HI KN++ + ++VPLI+GI G KG+GK+FQ +L+F+ MGIEPV +
Sbjct: 3 YYISPRFIDKLAVHITKNFL-EIPRIRVPLIIGIHGRKGEGKTFQCQLVFEKMGIEPVTI 61
Query: 106 SAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRF-GNTQMTVNNQ 164
S GELES+ AG+P +L+R RYR AS+ V+ QG+M L IND+DAG GRF G TQ TVN Q
Sbjct: 62 SGGELESKDAGDPARLLRLRYREASEKVKVQGRMCALFINDLDAGAGRFDGGTQYTVNTQ 121
Query: 165 IVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQP 224
+V TLMN++DNPT V + + E+ + +RIPII TGNDFST+YAPLIRDGRMEKFYW+P
Sbjct: 122 LVNATLMNIADNPTNVQLPGSYDETPL-HRIPIIVTGNDFSTLYAPLIRDGRMEKFYWEP 180
Query: 225 NLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGV 284
N ED + IV +++ D ++ ++ +++ F +QA+DF+ ALRSR YD I +I + G+
Sbjct: 181 NREDRVGIVGSIFKTDELSTGDIDNLIDEFSDQAIDFFSALRSRIYDEQIRDFIHQV-GI 239
Query: 285 ENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYMKN 339
E + +++ +++P F P V LLE G ++ EQ+ I E L +EY K+
Sbjct: 240 EKISRRVVN--SVEKIPDFPQPTFNVSRLLEYGKIMVGEQERIRELGLVEEYNKS 292
>gi|427728382|ref|YP_007074619.1| ribulose bisphosphate carboxylase small subunit [Nostoc sp. PCC
7524]
gi|427364301|gb|AFY47022.1| ribulose bisphosphate carboxylase small subunit [Nostoc sp. PCC
7524]
Length = 415
Score = 286 bits (732), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 146/294 (49%), Positives = 205/294 (69%), Gaps = 6/294 (2%)
Query: 46 YYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIM 105
YYIAP F+ L HI KN++ +L V+VPLILGI G KG+GK+FQ EL F+ MG+E ++
Sbjct: 3 YYIAPRFLDKLAVHITKNFL-NLPGVRVPLILGIHGRKGEGKTFQCELAFEKMGVEVTLI 61
Query: 106 SAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGN-TQMTVNNQ 164
S GELES AG+P +LIR RYR +++++ +GKM LMIND+DAG GRF TQ TVN Q
Sbjct: 62 SGGELESPDAGDPARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEGTQYTVNTQ 121
Query: 165 IVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQP 224
+V TLMN++DNPT V + + +S R+PII TGNDFST+YAPLIRDGRMEKFYW+P
Sbjct: 122 LVNATLMNIADNPTDVQLPGSY-DSTPLRRVPIIVTGNDFSTLYAPLIRDGRMEKFYWEP 180
Query: 225 NLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGV 284
N +D + IV ++ +DG+++ EV +V TFPNQ++DF+ ALRSR YD I +I + G
Sbjct: 181 NRDDKVGIVGGIFGEDGLSQREVEQLVDTFPNQSIDFFSALRSRIYDEQIRNFIHQV-GF 239
Query: 285 ENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYMK 338
E++ +++ + P F PE ++ L+ESG ++ EQ+ + ++L EY +
Sbjct: 240 EHVSLRVVNSLEGP--PAFKKPEFSLSHLIESGNFMVGEQKRVETSQLVDEYNR 291
>gi|312064704|gb|ADQ27442.1| chloroplast Rubisco activase [Solanum tuberosum]
Length = 359
Score = 285 bits (730), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 140/271 (51%), Positives = 189/271 (69%), Gaps = 9/271 (3%)
Query: 10 GVIDPLFAGNFLGKDSDIVFDYRQKVTRSFEYLQGD-----YYIAPVFMASLLCHIVKNY 64
G++D LF + + + V+++ + Q D +YIAP FM L HI KN+
Sbjct: 92 GMVDSLFQAPTGTGTHHAIMNSYEYVSQALKTYQMDNKLDGFYIAPSFMDKLAVHITKNF 151
Query: 65 IAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRE 124
++ L N+KVPLILG+WGGKGQGKSFQ EL+F+ MGI P++MSAGELES AGEP KLIR+
Sbjct: 152 LS-LPNIKVPLILGVWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQ 210
Query: 125 RYRTASQVVQNQGKMSCLMINDIDAGLGRF-GNTQMTVNNQIVVGTLMNLSDNPTRVSIG 183
RYR A+++++ +G M CL IND+DAG GR G TQ TVNNQ+V TLMN++DNPT V +
Sbjct: 211 RYREAAEIIR-KGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLP 269
Query: 184 QDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGIT 243
+ + + R+PII TGNDFST+YAPLIRDGRMEKFYW P ED + + ++ D +
Sbjct: 270 GMYNKQE-NCRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDNVP 328
Query: 244 KDEVGSIVKTFPNQALDFYGALRSRTYDRSI 274
++ V IV +FP Q++DF+GALR+R YD +
Sbjct: 329 EEAVVKIVDSFPGQSIDFFGALRARVYDDEV 359
>gi|300868066|ref|ZP_07112703.1| Ribulose bisphosphate carboxylase/oxygenase activase [Oscillatoria
sp. PCC 6506]
gi|300333904|emb|CBN57881.1| Ribulose bisphosphate carboxylase/oxygenase activase [Oscillatoria
sp. PCC 6506]
Length = 425
Score = 285 bits (728), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 142/295 (48%), Positives = 203/295 (68%), Gaps = 6/295 (2%)
Query: 46 YYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIM 105
YYI+P F+ + HI KN++ L V+VPLILGI G KG+GK+FQ EL F+ +G EPV +
Sbjct: 3 YYISPSFLDKVAVHITKNFL-DLPGVRVPLILGIHGRKGEGKTFQCELAFERLGFEPVTI 61
Query: 106 SAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRF-GNTQMTVNNQ 164
S GELES AG+P +LIR RYR A++ ++ +G+M + IND+DAG GRF TQ TVN Q
Sbjct: 62 SGGELESPDAGDPARLIRLRYREAAEQIRVRGEMCAIFINDLDAGAGRFDSTTQYTVNTQ 121
Query: 165 IVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQP 224
+V TLMN++DNPT V + + ++ + +R+PII TGNDF+T+YAPLIRDGRMEKFYW+P
Sbjct: 122 LVNATLMNIADNPTNVQLPGSYDDTPL-HRVPIIVTGNDFATLYAPLIRDGRMEKFYWEP 180
Query: 225 NLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGV 284
N +D + IV ++E DG+ + E+ V FP+QA+DF+ ALRSR YD I ++I I G+
Sbjct: 181 NRDDKIGIVSGIFEADGMPQSEIAEFVDAFPDQAIDFFSALRSRIYDEQIREFIHGI-GI 239
Query: 285 ENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYMKN 339
E + +L+ + P F P ++ L+E G +++ +Q I E +L +EY +N
Sbjct: 240 EKVSKRLVNSL--EAAPHFPKPNFSLSRLIEIGRAMVGQQYRIKEMRLVEEYNQN 292
>gi|334117637|ref|ZP_08491728.1| ribulose bisphosphate carboxylase small chain [Microcoleus
vaginatus FGP-2]
gi|333460746|gb|EGK89354.1| ribulose bisphosphate carboxylase small chain [Microcoleus
vaginatus FGP-2]
Length = 425
Score = 285 bits (728), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 145/292 (49%), Positives = 204/292 (69%), Gaps = 6/292 (2%)
Query: 46 YYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIM 105
YYI+P F+ + HI KN++ +L V+VPLILGI G KG+GK+FQTEL+F+ MG EPV++
Sbjct: 3 YYISPNFLDKVAVHITKNFL-NLPGVRVPLILGIHGRKGEGKTFQTELVFRRMGFEPVMI 61
Query: 106 SAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRF-GNTQMTVNNQ 164
S GELES AG+P +LIR RYR A++ ++ +G+M + IND+DAG GRF TQ TVN Q
Sbjct: 62 SGGELESPDAGDPARLIRLRYREAAEQIRVRGEMCAIFINDLDAGAGRFDSTTQYTVNTQ 121
Query: 165 IVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQP 224
+V TLMN++DNPT V + + +S +R+PII TGNDFST+YAPLIRDGRMEKFYW+P
Sbjct: 122 MVNATLMNIADNPTNVQLPGSY-DSTPLDRVPIIVTGNDFSTLYAPLIRDGRMEKFYWEP 180
Query: 225 NLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGV 284
+ +D + IV ++E D ++K E+ +V FP+QA+DF+ ALRSR YD I ++I I G+
Sbjct: 181 SRDDKIGIVGGIFESDKLSKTEIVGLVDNFPDQAIDFFSALRSRIYDEQIREFIHKI-GI 239
Query: 285 ENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEY 336
E + +L+ + P F P ++ LLE G ++ +Q+ I E +L EY
Sbjct: 240 ERVSKRLVNTL--EAAPDFQNPNFSLAHLLEMGSLMVGQQKRIQEMRLVDEY 289
>gi|427707439|ref|YP_007049816.1| ribulose 1,5-bisphosphate carboxylase small subunit [Nostoc sp. PCC
7107]
gi|427359944|gb|AFY42666.1| ribulose 1,5-bisphosphate carboxylase small subunit [Nostoc sp. PCC
7107]
Length = 415
Score = 285 bits (728), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 145/294 (49%), Positives = 204/294 (69%), Gaps = 6/294 (2%)
Query: 46 YYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIM 105
YYIAP F+ + HI KN++ +L V+VPLILGI G KG+GK+FQ EL F+ MG+E ++
Sbjct: 3 YYIAPRFLDKIAVHITKNFL-NLPGVRVPLILGIHGRKGEGKTFQCELAFEKMGVEVTLI 61
Query: 106 SAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGN-TQMTVNNQ 164
S GELES AG+P +LIR RYR ++ V+ +G+M LMIND+DAG GRF TQ TVN Q
Sbjct: 62 SGGELESPDAGDPARLIRLRYRETAEQVKVRGRMCVLMINDLDAGAGRFDEGTQYTVNTQ 121
Query: 165 IVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQP 224
+V TLMN++DNPT V + + +S+ R+PII TGNDFST+YAPLIRDGRMEKFYW+P
Sbjct: 122 LVNATLMNIADNPTDVQLPGSY-DSNPIRRVPIIVTGNDFSTLYAPLIRDGRMEKFYWEP 180
Query: 225 NLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGV 284
N ++ + IV ++ +DG++ EV V TFPNQ++DF+ A+RSR YD I K+I +I G
Sbjct: 181 NRDEKVGIVGGIFVEDGLSSREVEQFVDTFPNQSIDFFSAVRSRIYDEQIRKFIHEI-GF 239
Query: 285 ENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYMK 338
EN+ +++ + P F P + L+ESG+ ++ EQ+ + ++L EY +
Sbjct: 240 ENISLRVVNSVEGP--PTFKKPNFNLSHLIESGHFMVGEQKRVENSQLVDEYNR 291
>gi|16471|emb|CAA32429.1| unnamed protein product [Arabidopsis thaliana]
Length = 473
Score = 284 bits (727), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 149/293 (50%), Positives = 202/293 (68%), Gaps = 8/293 (2%)
Query: 46 YYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIM 105
+YIAP FM L+ HI KN++ L N+KVPLILG GGKGQGKSFQ EL+ MGI P++M
Sbjct: 131 FYIAPAFMDKLVVHITKNFLT-LPNIKVPLILGSRGGKGQGKSFQCELVMAKMGINPIMM 189
Query: 106 SAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRF-GNTQMTVNNQ 164
SAGELES AGE KLIR+RYR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ
Sbjct: 190 SAGELESGNAGEVRKLIRQRYREAADLIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQ 248
Query: 165 IVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQP 224
+V TLMN++DNPT V + + + + R+PII TGNDFST+Y PLI DGRMEKF P
Sbjct: 249 MVNATLMNIADNPTNVQLPGMYNKEE-NARVPIICTGNDFSTLYGPLILDGRMEKFLTGP 307
Query: 225 NLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGV 284
ED + V ++ D I +++ ++V FP Q++DF+GALR+R YD + K+++ + GV
Sbjct: 308 TREDRIG-VWGIFRTDKIKDEDIVTLVDQFPGQSIDFFGALRARVYDDEVRKFVESL-GV 365
Query: 285 ENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYM 337
E +G +L+ R+ PVF PE T E L+E G L+ EQ+ + +L++ Y+
Sbjct: 366 EKIGKRLVNSREGP--PVFEQPEMTYEKLMEYGNMLVMEQENVKRVQLAETYL 416
>gi|75910107|ref|YP_324403.1| ribulose 1,5-bisphosphate carboxylase small subunit [Anabaena
variabilis ATCC 29413]
gi|75703832|gb|ABA23508.1| ribulose 1,5-bisphosphate carboxylase small subunit [Anabaena
variabilis ATCC 29413]
Length = 414
Score = 284 bits (727), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 146/294 (49%), Positives = 204/294 (69%), Gaps = 6/294 (2%)
Query: 46 YYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIM 105
YYIAP F+ L HI KN++ ++ V+VPLILGI G KG+GK+FQ EL F+ MGIE ++
Sbjct: 3 YYIAPRFLDKLAVHITKNFL-NIPGVRVPLILGIHGRKGEGKTFQCELAFEKMGIEVTLI 61
Query: 106 SAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGN-TQMTVNNQ 164
S GELES AG+P +LIR RYR +++++ +GKM LMIND+DAG GRF TQ TVN Q
Sbjct: 62 SGGELESPDAGDPARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEGTQYTVNTQ 121
Query: 165 IVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQP 224
+V TLMN++DNPT V + + +S+ R+PII TGNDFST+YAPLIRDGRMEKFYW+P
Sbjct: 122 LVNATLMNIADNPTDVQLPGSY-DSNPIRRVPIIVTGNDFSTLYAPLIRDGRMEKFYWEP 180
Query: 225 NLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGV 284
N +D + IV ++ +DG++K E+ +V TFP Q++DF+ ALRSR YD I +I + G
Sbjct: 181 NRDDKVGIVGGIFAEDGLSKREIEQLVDTFPKQSIDFFSALRSRIYDEQIRDFIHQV-GF 239
Query: 285 ENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYMK 338
E + +++ + P F P+ ++ L+ESG +L EQQ + ++L EY +
Sbjct: 240 ERISLRVVNSVEAP--PEFKKPDFSLAHLIESGNLVLGEQQRVDNSQLVDEYNR 291
>gi|94549022|gb|ABF38996.1| ribulose-1,5-bisphosphate carboxylase/oxygenase activase
[Pachysandra terminalis]
Length = 314
Score = 284 bits (727), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 139/261 (53%), Positives = 187/261 (71%), Gaps = 6/261 (2%)
Query: 78 GIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQG 137
GIWGGKGQGKSFQ EL+F MGI P++MSAGELES AGEP KLIR+RYR A+ +++ +G
Sbjct: 2 GIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIR-KG 60
Query: 138 KMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIP 196
KM CL IND+DAG GR G TQ TVNNQ+V TLMN++DNPT V + + + + R+P
Sbjct: 61 KMCCLFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEE-NPRVP 119
Query: 197 IIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITKDEVGSIVKTFPN 256
+I TGNDFST+YAPLIRDGRMEKFYW P +D + + +++ D + ++V IV TFP
Sbjct: 120 VIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCTGIFKADNVPPEDVVKIVDTFPG 179
Query: 257 QALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVFTPPEKTVEALLES 316
Q++DF+GALR+R YD + KWI + GV+ +G KL+ R+ P F P+ TVE LLE
Sbjct: 180 QSIDFFGALRARVYDDEVRKWISGV-GVDKVGKKLVNSREGP--PTFEQPKMTVEKLLEY 236
Query: 317 GYSLLREQQLIMETKLSKEYM 337
G L++EQ+ + +L+ +Y+
Sbjct: 237 GNMLVQEQENVKRVQLADKYL 257
>gi|440681100|ref|YP_007155895.1| ribulose 1,5-bisphosphate carboxylase small subunit [Anabaena
cylindrica PCC 7122]
gi|428678219|gb|AFZ56985.1| ribulose 1,5-bisphosphate carboxylase small subunit [Anabaena
cylindrica PCC 7122]
Length = 414
Score = 283 bits (725), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 145/294 (49%), Positives = 200/294 (68%), Gaps = 6/294 (2%)
Query: 46 YYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIM 105
YYIAP F+ L HI KN++ HL V+VPLILGI G KG+GK+FQ EL F+ MGIE ++
Sbjct: 3 YYIAPSFLDKLAVHITKNFL-HLPGVRVPLILGIHGRKGEGKTFQCELAFEKMGIEVTLI 61
Query: 106 SAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGN-TQMTVNNQ 164
S GELES AG+P +LIR RYR +++++ +GKM LMIND+DAG GRF TQ TVN Q
Sbjct: 62 SGGELESPDAGDPARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEGTQYTVNTQ 121
Query: 165 IVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQP 224
+V TLMN++DNPT V + + +S +R+PII TGNDFST+YAPLIRDGRMEKFYW+P
Sbjct: 122 LVNATLMNIADNPTDVQLPGSY-DSTPLHRVPIIVTGNDFSTLYAPLIRDGRMEKFYWEP 180
Query: 225 NLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGV 284
N +D + IV ++ DG ++ E+ +V TF NQA+DF+ +LRSR YD+ I +I + G
Sbjct: 181 NRDDKVGIVGGIFAPDGFSQREIEELVDTFANQAIDFFSSLRSRIYDQQIRNFIHQV-GF 239
Query: 285 ENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYMK 338
E + +++ + P F P + L+ESG ++ EQ+ + + L EY +
Sbjct: 240 EQISKRVVNSLEGP--PEFKKPNFNLSHLIESGKLMVGEQKRVETSHLVDEYNR 291
>gi|428305071|ref|YP_007141896.1| ribulose 1,5-bisphosphate carboxylase small subunit [Crinalium
epipsammum PCC 9333]
gi|428246606|gb|AFZ12386.1| ribulose 1,5-bisphosphate carboxylase small subunit [Crinalium
epipsammum PCC 9333]
Length = 427
Score = 283 bits (724), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 144/292 (49%), Positives = 203/292 (69%), Gaps = 6/292 (2%)
Query: 46 YYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIM 105
YYI+P F+ L HI KN++ L V+VPLILGI G KG+GK+FQ EL+FQ MGIE V M
Sbjct: 3 YYISPRFLDKLAVHITKNFL-DLPGVRVPLILGIHGRKGEGKTFQCELVFQRMGIEVVHM 61
Query: 106 SAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGN-TQMTVNNQ 164
SAGELES AG+P +L+R RYR A+++++ +GKM LMIND+DAG GRF TQ TVN Q
Sbjct: 62 SAGELESPDAGDPSRLVRLRYREAAELIKVRGKMCVLMINDLDAGAGRFDQGTQYTVNTQ 121
Query: 165 IVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQP 224
+V TLMN++DNPT V + + +S +R+PI+ TGNDF+T+YAPLIRDGRMEKF+W+P
Sbjct: 122 MVNATLMNIADNPTNVQLPGSY-DSTPLHRVPILVTGNDFTTLYAPLIRDGRMEKFHWEP 180
Query: 225 NLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGV 284
++ + IV +Y +DG+++ E+ +V F QA+DF+GALRSR YD I ++I +G
Sbjct: 181 TRDEKVGIVRGIYSEDGLSESEIAQLVDNFVTQAVDFFGALRSRIYDEQIRQFIHQVG-- 238
Query: 285 ENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEY 336
N + + D P+F P+ ++ L+E G + +EQQ + ++L +EY
Sbjct: 239 YNKVSSAVVNSVDGP-PIFQKPDFSLSRLIEFGNLMAQEQQRVQSSRLVEEY 289
>gi|428320865|ref|YP_007118747.1| ribulose 1,5-bisphosphate carboxylase small subunit [Oscillatoria
nigro-viridis PCC 7112]
gi|428244545|gb|AFZ10331.1| ribulose 1,5-bisphosphate carboxylase small subunit [Oscillatoria
nigro-viridis PCC 7112]
Length = 424
Score = 283 bits (724), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 142/292 (48%), Positives = 205/292 (70%), Gaps = 6/292 (2%)
Query: 46 YYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIM 105
YYI+P F+ + H+ KN++ +L V+VPLILGI G KG+GK+FQTEL+F+ MG EPV++
Sbjct: 3 YYISPNFLDKVAVHVTKNFL-NLPGVRVPLILGIHGRKGEGKTFQTELVFRRMGFEPVMI 61
Query: 106 SAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNT-QMTVNNQ 164
S GELES AG+P +LIR RYR A++ ++ +G+M + IND+DAG GRF T Q TVN Q
Sbjct: 62 SGGELESPDAGDPARLIRLRYREAAEQIRVRGEMCAIFINDLDAGAGRFDTTTQYTVNTQ 121
Query: 165 IVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQP 224
+V TLMN++DNPT V + + +S +R+PII TGNDFST+YAPLIRDGRMEKFYW+P
Sbjct: 122 MVNATLMNIADNPTNVQLPGSY-DSTPLHRVPIIVTGNDFSTLYAPLIRDGRMEKFYWEP 180
Query: 225 NLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGV 284
+ +D + IV ++E D ++K E+ +V FP+QA+DF+ ALRSR YD + ++I + G+
Sbjct: 181 SRDDKIGIVGGIFESDKLSKTEIVGLVDHFPDQAIDFFSALRSRIYDEQVREFIHKV-GI 239
Query: 285 ENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEY 336
E + +L+ + P F P+ ++ LLE G ++ +Q+ I E +L EY
Sbjct: 240 ERVSKRLVNTL--EAAPDFKNPDFSLAHLLEMGSLMVGQQKRIQEMRLVDEY 289
>gi|149941204|emb|CAO02534.1| putative rubisco activase [Vigna unguiculata]
Length = 229
Score = 283 bits (724), Expect = 9e-74, Method: Compositional matrix adjust.
Identities = 136/231 (58%), Positives = 174/231 (75%), Gaps = 4/231 (1%)
Query: 42 LQGDYYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIE 101
++ YYIAP FM L+ HI KN++ L N+KVPLILGIWGGKGQGKSFQ EL+F MGI
Sbjct: 1 MKDGYYIAPAFMDKLVVHITKNFMT-LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGIN 59
Query: 102 PVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMT 160
P++MSAGELES AGEP KLIR+RYR A+ +++ +GKM L IND+DAG GR G TQ T
Sbjct: 60 PIVMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCALFINDLDAGAGRLGGTTQYT 118
Query: 161 VNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKF 220
VNNQ+V TLMN++DNPT V + + + + R+PII TGNDFST+YAPLIRDGRMEKF
Sbjct: 119 VNNQMVNATLMNIADNPTNVQLPGMYNKEE-NPRVPIIVTGNDFSTLYAPLIRDGRMEKF 177
Query: 221 YWQPNLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYD 271
YW P +D + + ++ DG+ ++EV +V TFP Q++DF+GALR+R YD
Sbjct: 178 YWAPTRDDRVGVCKGIFRTDGVPEEEVYQLVDTFPGQSIDFFGALRARVYD 228
>gi|119486453|ref|ZP_01620511.1| AAA ATPase, central region [Lyngbya sp. PCC 8106]
gi|119456355|gb|EAW37486.1| AAA ATPase, central region [Lyngbya sp. PCC 8106]
Length = 445
Score = 283 bits (723), Expect = 9e-74, Method: Compositional matrix adjust.
Identities = 144/295 (48%), Positives = 203/295 (68%), Gaps = 7/295 (2%)
Query: 46 YYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIM 105
YYI+P F+ L HI KN++ + N++VPLILGI G KG+GK+FQ EL+F+ MG EPV +
Sbjct: 3 YYISPRFLDKLAVHITKNFLK-ISNLRVPLILGIHGRKGEGKTFQCELVFEKMGFEPVTI 61
Query: 106 SAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGN-TQMTVNNQ 164
S GELES AG+P +LIR RYR AS+ + +G+M L INDIDAG GRF + TQ TVN Q
Sbjct: 62 SGGELESPDAGDPSRLIRLRYREASEQTKVRGQMCALFINDIDAGAGRFDSGTQYTVNTQ 121
Query: 165 IVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQP 224
+V TLMN++DNPT V + + E+ + RIPII TGNDFST+YAPLIRDGRMEKFYW+P
Sbjct: 122 LVNATLMNIADNPTNVQLPGSYDETPL-QRIPIIVTGNDFSTLYAPLIRDGRMEKFYWEP 180
Query: 225 NLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGV 284
N ++ + IV +++++ + K ++ +V FP Q++DF+ ALRSR YD I +I + G+
Sbjct: 181 NSKERVEIVEGIFQQE-LLKQDIIKLVDEFPEQSVDFFSALRSRIYDEQIQSFIHQM-GI 238
Query: 285 ENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYMKN 339
E + +++ ++ P F P LLE G+ ++ EQ+ I E +L +EY +N
Sbjct: 239 EKISKRIVN--STEKPPEFNKPNFKFSHLLEMGHQMVAEQRRIQELRLVEEYNQN 291
>gi|443478603|ref|ZP_21068337.1| AAA ATPase central domain protein [Pseudanabaena biceps PCC 7429]
gi|443016085|gb|ELS30823.1| AAA ATPase central domain protein [Pseudanabaena biceps PCC 7429]
Length = 297
Score = 282 bits (722), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 145/293 (49%), Positives = 200/293 (68%), Gaps = 6/293 (2%)
Query: 46 YYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIM 105
YYI+P F+ L H+ KN++ L NV VPLILGI GGKG+GKSFQ EL F+ +GIEP+ M
Sbjct: 3 YYISPRFLDKLAVHLAKNFM-KLPNVTVPLILGIHGGKGEGKSFQCELAFEKLGIEPIRM 61
Query: 106 SAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRF-GNTQMTVNNQ 164
S GELES AG+P +LIR RYR A+++V+ +GKM L+IND+DAG GR TQ TVN Q
Sbjct: 62 SGGELESPDAGDPARLIRMRYREAAELVKVRGKMCALLINDLDAGAGRVDSTTQYTVNTQ 121
Query: 165 IVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQP 224
+V TLMN++DNPT V + + +S+ R+PII TGNDFST+YAPL+RDGRMEKF+W P
Sbjct: 122 LVNATLMNIADNPTNVQLPGSY-DSNPIRRVPIIVTGNDFSTLYAPLVRDGRMEKFFWMP 180
Query: 225 NLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGV 284
+ D + IV ++ D I + E+ +V +P++++DF+G+LRS YD + K++ DI G+
Sbjct: 181 DRTDRIGIVSGIFAPDNIPQWEIERLVDMYPDRSIDFFGSLRSSLYDEQVRKFVYDI-GL 239
Query: 285 ENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYM 337
E L +L+ + LP F PP + L E+G LL E + + L +EYM
Sbjct: 240 ERLSLRLVN--STEALPEFRPPSFDLRTLKEAGDRLLAEGDRVSQRNLIQEYM 290
>gi|86605146|ref|YP_473909.1| ribulose bisphosphate carboxylase/oxygenase activase [Synechococcus
sp. JA-3-3Ab]
gi|86553688|gb|ABC98646.1| ribulose bisphosphate carboxylase/oxygenase activase [Synechococcus
sp. JA-3-3Ab]
Length = 407
Score = 282 bits (722), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 138/293 (47%), Positives = 204/293 (69%), Gaps = 6/293 (2%)
Query: 46 YYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIM 105
YYI P F+ + H+ KN++ L +V VPLILGI G KG+GK+FQ LIF+ M + V +
Sbjct: 3 YYIPPTFLKVVALHLTKNHLP-LPDVPVPLILGIHGRKGEGKTFQCNLIFERMKVYAVHI 61
Query: 106 SAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGN-TQMTVNNQ 164
S GELES AG+P ++IR RYR A++ ++ G+M+ LMIND+DAG GR + TQ TVN Q
Sbjct: 62 SGGELESPDAGDPARMIRLRYREAAEHIRKFGQMAVLMINDLDAGAGRLNSMTQYTVNTQ 121
Query: 165 IVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQP 224
+V TLMN++DNPT V + + + R+PII TGNDFST+YAPLIRDGRM KFYW+P
Sbjct: 122 LVSATLMNIADNPTNVQLPGSYDPKPLP-RVPIIATGNDFSTLYAPLIRDGRMRKFYWEP 180
Query: 225 NLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGV 284
+ D ++IVH +++ DG++ +E+ +V FP QA+DF+GALR++ YD + ++I ++ G+
Sbjct: 181 SRTDRIHIVHGIFQADGLSLEEIERLVDAFPEQAIDFFGALRAQLYDEQVWQFIQEV-GL 239
Query: 285 ENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYM 337
E + +LLK ++ P F PP ++E L+++G+ L EQ + +LS+EY+
Sbjct: 240 EGIAFRLLKSKEGA--PQFPPPRFSLEQLIQAGHQLKAEQHQVEARRLSEEYL 290
>gi|119508823|ref|ZP_01627975.1| ribulose 1,5-bisphosphate carboxylase/oxygenase activase [Nodularia
spumigena CCY9414]
gi|119466352|gb|EAW47237.1| ribulose 1,5-bisphosphate carboxylase/oxygenase activase [Nodularia
spumigena CCY9414]
Length = 416
Score = 281 bits (720), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 142/294 (48%), Positives = 208/294 (70%), Gaps = 6/294 (2%)
Query: 46 YYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIM 105
YYIAP F+ L HI KN++ +L V+VPLILGI G KG+GK+FQ +L+F+ MGIE +
Sbjct: 3 YYIAPRFLDKLGVHITKNFL-NLPGVRVPLILGIHGRKGEGKTFQCQLVFEKMGIEVTNI 61
Query: 106 SAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGN-TQMTVNNQ 164
S GELES AG+P +LIR RYR +++++ +GKM LMIND+DAG GRF TQ TVN Q
Sbjct: 62 SGGELESPDAGDPARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEGTQYTVNTQ 121
Query: 165 IVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQP 224
+V TLMN++DNPT V + + +S +R+PII TGNDFST+YAPLIRDGRMEKFYW+P
Sbjct: 122 MVNATLMNIADNPTDVQLPGSY-DSTPLHRVPIIVTGNDFSTLYAPLIRDGRMEKFYWEP 180
Query: 225 NLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGV 284
+ +D + IV ++ +DG+++ EV +V TFP+Q++DFY ALRSR YD+ + ++I + G
Sbjct: 181 DRDDKVGIVGGIFAEDGLSQREVAQLVDTFPHQSIDFYSALRSRIYDQQVREFIHQV-GF 239
Query: 285 ENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYMK 338
E + ++++ ++ P F P+ ++ L+ +G ++ EQQ + ++L EY +
Sbjct: 240 ERVSSRIVN--SAEKPPEFKKPDFSLSNLISAGNFMVGEQQRVETSQLVDEYNR 291
>gi|17229025|ref|NP_485573.1| ribulose 1,5-bisphosphate carboxylase/oxygenase activase [Nostoc
sp. PCC 7120]
gi|20139326|sp|P58555.1|RCA_ANASP RecName: Full=Ribulose bisphosphate carboxylase/oxygenase activase;
Short=RA; Short=RuBisCO activase
gi|17135353|dbj|BAB77899.1| ribulose 1,5-bisphosphate carboxylase/oxygenase activase [Nostoc
sp. PCC 7120]
Length = 414
Score = 281 bits (720), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 145/294 (49%), Positives = 204/294 (69%), Gaps = 6/294 (2%)
Query: 46 YYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIM 105
YYIAP F+ L HI KN++ ++ V+VPLILGI G KG+GK+FQ EL F+ MGIE ++
Sbjct: 3 YYIAPRFLDKLAVHITKNFL-NIPGVRVPLILGIHGRKGEGKTFQCELAFEKMGIEVTLI 61
Query: 106 SAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGN-TQMTVNNQ 164
S GELES AG+P +LIR RYR +++++ +GKM LMIND+DAG GRF TQ TVN Q
Sbjct: 62 SGGELESPDAGDPARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEGTQYTVNTQ 121
Query: 165 IVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQP 224
+V TLMN++DNPT V + + +S+ R+PII TGNDFST+YAPLIRDGRMEKFYW+P
Sbjct: 122 LVNATLMNIADNPTDVQLPGSY-DSNPIRRVPIIVTGNDFSTLYAPLIRDGRMEKFYWEP 180
Query: 225 NLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGV 284
N +D + IV ++ +DG+++ E+ +V TFP Q++DF+ ALRSR YD I +I + G
Sbjct: 181 NRDDKVGIVGGIFAEDGLSQREIEQLVDTFPKQSIDFFSALRSRIYDIQIRDFIHKV-GF 239
Query: 285 ENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYMK 338
E + +++ + P F P+ ++ L+ESG +L EQQ + ++L EY +
Sbjct: 240 ERISLRVVNSLEAP--PEFKKPDFSLAHLIESGNLVLGEQQRVDNSQLVDEYNR 291
>gi|10720250|sp|Q06721.1|RCA_ANASC RecName: Full=Ribulose bisphosphate carboxylase/oxygenase activase;
Short=RA; Short=RuBisCO activase
gi|485516|pir||S33627 ribulose-bisphosphate carboxylase activase (EC 6.3.4.-) - Anabaena
sp. (strain CA)
gi|296414|emb|CAA48129.1| ribulose 1,5-bisphosphate carboxylase/oxygenase activase [Anabaena
sp. CA]
Length = 415
Score = 281 bits (719), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 143/294 (48%), Positives = 204/294 (69%), Gaps = 6/294 (2%)
Query: 46 YYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIM 105
YYIAP F+ L HI KN++ +L V+VPLILGI G KG+GK+FQ EL F+ MG+E ++
Sbjct: 3 YYIAPRFLDKLAVHITKNFL-NLPGVRVPLILGIHGRKGEGKTFQCELAFEKMGVEVTLI 61
Query: 106 SAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGN-TQMTVNNQ 164
S GELES AG+P +LIR RYR +++++ +GKM LMIND+DAG GRF TQ TVN Q
Sbjct: 62 SGGELESPDAGDPARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEGTQYTVNTQ 121
Query: 165 IVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQP 224
+V TLMN++DNPT V + + +S R+PII TGNDFST+YAPLIRDGRMEKFYW+P
Sbjct: 122 LVNATLMNIADNPTDVQLPGSY-DSTPLRRVPIIVTGNDFSTLYAPLIRDGRMEKFYWEP 180
Query: 225 NLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGV 284
+ ++ + IV ++ +DG+++ +V +V +FPNQ++DF+ ALRSR YD I +I + G
Sbjct: 181 HRDEKVGIVGGIFAEDGLSQRDVEKLVDSFPNQSIDFFSALRSRIYDEQIRDFIHQV-GY 239
Query: 285 ENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYMK 338
EN+ +++ + P F P+ T+ L+ES ++ EQ+ I ++L EY +
Sbjct: 240 ENVSLRVVNSLEGP--PAFKKPDFTLSHLIESANFMVAEQKRIETSQLVDEYNR 291
>gi|427736905|ref|YP_007056449.1| ribulose bisphosphate carboxylase small subunit [Rivularia sp. PCC
7116]
gi|427371946|gb|AFY55902.1| ribulose bisphosphate carboxylase small subunit [Rivularia sp. PCC
7116]
Length = 787
Score = 280 bits (717), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 144/294 (48%), Positives = 200/294 (68%), Gaps = 7/294 (2%)
Query: 46 YYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIM 105
YYI+P F L HI KNY+ L V+VPLILGI G KG+GKSFQ EL+F+ MG+E +
Sbjct: 3 YYISPRFQDKLSVHITKNYLD-LPKVRVPLILGIHGRKGEGKSFQCELVFEKMGVEVTHI 61
Query: 106 SAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGN-TQMTVNNQ 164
S GELES AG+P +LIR RYR +++++ +GKM LMIND+DAG GRF TQ TVN Q
Sbjct: 62 SGGELESPDAGDPARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEGTQYTVNTQ 121
Query: 165 IVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQP 224
+V TLMN++DNPT V + + +S +R+PII TGNDFST+YAPLIRDGRMEKFYW+P
Sbjct: 122 LVNATLMNIADNPTDVQLPGSY-DSTPLHRVPIIVTGNDFSTLYAPLIRDGRMEKFYWEP 180
Query: 225 NLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGV 284
ED + I+ ++ +DG++K +V +V F NQA+DFY ALRSR YD I ++I + GV
Sbjct: 181 TREDKVGIIGGIFSEDGLSKQDVEQLVDHFGNQAVDFYSALRSRIYDEQIRRFIQN-KGV 239
Query: 285 ENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYMK 338
+ + ++++ +P F P+ + L+E ++ EQQ + + L +EY +
Sbjct: 240 DRVSSQVV---NSNNIPSFQKPKFGLSDLMEVASLMVEEQQRVDNSHLVEEYNR 290
>gi|427715651|ref|YP_007063645.1| ribulose 1,5-bisphosphate carboxylase small subunit [Calothrix sp.
PCC 7507]
gi|427348087|gb|AFY30811.1| ribulose 1,5-bisphosphate carboxylase small subunit [Calothrix sp.
PCC 7507]
Length = 417
Score = 280 bits (716), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 143/294 (48%), Positives = 202/294 (68%), Gaps = 6/294 (2%)
Query: 46 YYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIM 105
YYIAP F+ L HI KN++ L V+VPLILGI G KG+GK+FQ EL+F+ MGIE ++
Sbjct: 3 YYIAPRFLDKLAVHITKNFLK-LPGVRVPLILGIHGRKGEGKTFQCELVFEKMGIEVTLI 61
Query: 106 SAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGN-TQMTVNNQ 164
S GELES AG+P +LIR RYR +++++ +GKM LMIND+DAG GRF TQ TVN Q
Sbjct: 62 SGGELESPDAGDPARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEGTQYTVNTQ 121
Query: 165 IVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQP 224
+V TLMN++DNPT V + + +S +R+PII TGNDF+T+YAPLIRDGRMEKFYW+P
Sbjct: 122 LVNATLMNIADNPTDVQLPGSY-DSTPLHRVPIIVTGNDFTTLYAPLIRDGRMEKFYWEP 180
Query: 225 NLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGV 284
+ +D + IV ++E DG+++ EV +V TFP+Q++DFY A+RSR YD I +I + G
Sbjct: 181 DRDDKVGIVGGIFEPDGLSRKEVEQLVDTFPHQSIDFYSAVRSRIYDEQIRNYIHKV-GF 239
Query: 285 ENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYMK 338
E + ++ + P F P + L+E+G ++ EQ+ + ++L EY +
Sbjct: 240 EQVSLSVVNSVEGP--PEFKKPNFGLSHLIEAGNLMVGEQKRVENSQLVDEYNR 291
>gi|23320705|gb|AAN15946.1| rubisco activase, partial [Medicago sativa]
Length = 270
Score = 278 bits (710), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 137/257 (53%), Positives = 183/257 (71%), Gaps = 6/257 (2%)
Query: 83 KGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCL 142
+GQGKSFQ EL+F MGI P++MSAGELES AGEP KLIR+RYR AS +++ +GKM CL
Sbjct: 2 EGQGKSFQAELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREASDIIR-KGKMCCL 60
Query: 143 MINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTG 201
IND+DAG GR G TQ TVNNQ+V TLMN++DNPT V + + + D R+PII TG
Sbjct: 61 FINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKED-NARVPIIVTG 119
Query: 202 NDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDF 261
NDFST+YAPLIRDGRMEKFYW P ED + + ++ D I KD++ IV TFP Q++DF
Sbjct: 120 NDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCIGIFRHDNIAKDDIVKIVDTFPGQSIDF 179
Query: 262 YGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLL 321
+GALR+R YD + KW+ + G+E +G KL+ ++ PVF P+ T+E LLE G L+
Sbjct: 180 FGALRARVYDDEVRKWVSGV-GIETIGKKLVNSKEGP--PVFEQPKMTLEKLLEYGNMLV 236
Query: 322 REQQLIMETKLSKEYMK 338
EQ+ + +L+ +Y++
Sbjct: 237 SEQENVKRVQLADKYLE 253
>gi|149941210|emb|CAO02537.1| putative rubisco activase [Vigna unguiculata]
Length = 236
Score = 277 bits (709), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 136/232 (58%), Positives = 175/232 (75%), Gaps = 6/232 (2%)
Query: 36 TRSFEYLQGDYYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIF 95
T +F+ ++ YYIAP FM L+ HI KN++ L N+KVPLILGIWGGKGQGKSFQ EL+F
Sbjct: 9 TYNFDNMKDGYYIAPAFMDKLVVHITKNFMT-LPNIKVPLILGIWGGKGQGKSFQCELVF 67
Query: 96 QAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRF- 154
MGI P++MSAGELES AGEP KLIR+RYR A+ +++ +GKM L IND+DAG GR
Sbjct: 68 AKMGINPIVMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCALFINDLDAGAGRLG 126
Query: 155 GNTQMTVNNQIVVGTLMNLSDNPTRVSI-GQDWRESDITNRIPIIFTGNDFSTIYAPLIR 213
G TQ TVNNQ+V TLMN++DNPT V + G +E ++ R+PII TGNDFST+YAPLIR
Sbjct: 127 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENL--RVPIIVTGNDFSTLYAPLIR 184
Query: 214 DGRMEKFYWQPNLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGAL 265
DGRMEKFYW P +D + + ++ DG+ ++EV +V TFP Q++DF+GAL
Sbjct: 185 DGRMEKFYWAPTRDDRVGVCKGIFRTDGVPEEEVYKLVDTFPGQSIDFFGAL 236
>gi|186684323|ref|YP_001867519.1| ribulose bisphosphate carboxylase, small chain [Nostoc punctiforme
PCC 73102]
gi|186466775|gb|ACC82576.1| ribulose bisphosphate carboxylase, small chain [Nostoc punctiforme
PCC 73102]
Length = 425
Score = 277 bits (709), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 143/294 (48%), Positives = 200/294 (68%), Gaps = 6/294 (2%)
Query: 46 YYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIM 105
YYIAP F+ L HI KN++ L V+VP+ILGI G KG+GK+FQ +L+F+ MGIE +
Sbjct: 3 YYIAPRFLDKLAVHITKNFLK-LPGVRVPVILGIHGRKGEGKTFQCQLVFEKMGIEVTHV 61
Query: 106 SAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGN-TQMTVNNQ 164
S GELES AG+P +LIR RYR +++++ +GKM LMIND+DAG GRF TQ TVN Q
Sbjct: 62 SGGELESPDAGDPARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEGTQYTVNTQ 121
Query: 165 IVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQP 224
+V TLMN++DNPT V + + +S +R+PII TGNDFST+YAPLIRDGRMEKFYW+P
Sbjct: 122 LVNATLMNIADNPTDVQLPGSY-DSTPLHRVPIIVTGNDFSTLYAPLIRDGRMEKFYWEP 180
Query: 225 NLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGV 284
+ +D + IV ++E DG+++ EV +V TF NQ++DF+ ALRSR YD I +I + G
Sbjct: 181 DRDDKVGIVKGIFEPDGLSQKEVEQLVDTFVNQSIDFFSALRSRIYDEQIRNYIHQV-GF 239
Query: 285 ENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYMK 338
E + ++ + P F P+ + L+ESG L+ EQ+ + + L +Y +
Sbjct: 240 ERVSLSVVNSTEGP--PEFKKPDFRLSHLIESGNFLVGEQKRVENSHLVDDYNR 291
>gi|428220631|ref|YP_007104801.1| ribulose bisphosphate carboxylase small subunit [Synechococcus sp.
PCC 7502]
gi|427993971|gb|AFY72666.1| ribulose bisphosphate carboxylase small subunit [Synechococcus sp.
PCC 7502]
Length = 418
Score = 277 bits (708), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 142/293 (48%), Positives = 203/293 (69%), Gaps = 5/293 (1%)
Query: 45 DYYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVI 104
+YYI+P F+ L HI KN++ +L + VPLILGI G KG+GKSFQ EL+F+ MGIEPV
Sbjct: 2 NYYISPRFLDKLAVHITKNFL-NLPGLTVPLILGIHGRKGEGKSFQCELVFKLMGIEPVR 60
Query: 105 MSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRF-GNTQMTVNN 163
MSAGELES AG+P +LIR RYR A+ +++ +GKM L+INDIDAG GR +TQ TVN
Sbjct: 61 MSAGELESPDAGDPVRLIRTRYREAADLIKVRGKMCVLLINDIDAGAGRVDSSTQYTVNT 120
Query: 164 QIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQ 223
Q+V GTLMN++DNPT V + + E++ +R+PI+ TGNDFST+YAPL+RDGRMEKFYW+
Sbjct: 121 QLVNGTLMNIADNPTDVQLPGSY-ETEPISRVPILLTGNDFSTLYAPLLRDGRMEKFYWE 179
Query: 224 PNLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGG 283
P ED + IV +++ DG+T+ V ++ FP+Q++DF+GALRS+ YD+ + +I +I G
Sbjct: 180 PTKEDRIGIVTGIFKADGLTEQNVEELISNFPHQSIDFFGALRSQVYDQQVRDFIREI-G 238
Query: 284 VENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEY 336
+ + ++ D + P + L++ G ++ EQQ + L +EY
Sbjct: 239 INKVSTHIVN-NPDLTVKFQQSPNFGLPYLIKLGNMMVHEQQRVQSRGLVEEY 290
>gi|354567922|ref|ZP_08987089.1| ribulose bisphosphate carboxylase small chain [Fischerella sp.
JSC-11]
gi|353541596|gb|EHC11063.1| ribulose bisphosphate carboxylase small chain [Fischerella sp.
JSC-11]
Length = 415
Score = 277 bits (708), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 140/296 (47%), Positives = 204/296 (68%), Gaps = 6/296 (2%)
Query: 46 YYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIM 105
YYI+P F+ + HI KN++ L ++VPLILGI G KG+GKSFQ EL+F+ MG+E +
Sbjct: 3 YYISPRFLDKVAVHITKNFL-DLPGLRVPLILGIHGRKGEGKSFQCELVFEKMGVEVTHI 61
Query: 106 SAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGN-TQMTVNNQ 164
S GELES AG+P +LIR RYR +++++ +GKM LMIND+DAG GRF TQ TVN Q
Sbjct: 62 SGGELESPDAGDPARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEGTQYTVNTQ 121
Query: 165 IVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQP 224
+V TLMN++DNPT V + + + + +R+PII TGNDFST+YAPLIRDGRMEKFYW+P
Sbjct: 122 LVNATLMNIADNPTDVQLPGSYDPTPL-HRVPIIVTGNDFSTLYAPLIRDGRMEKFYWEP 180
Query: 225 NLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGV 284
+ +D + IV ++ +DG+++ E+ +V TF NQ++DF+ ALRSR YD I +I ++ GV
Sbjct: 181 DRDDKIGIVGGIFSEDGLSQREIEQLVDTFLNQSIDFFSALRSRIYDEQIRDFIYEV-GV 239
Query: 285 ENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYMKNI 340
E + +++ + P F P + L+E G ++ EQQ ++ ++L EY + +
Sbjct: 240 ERVSRRVVNSLEGP--PQFRKPNFNLSHLIEMGNVMVTEQQRVLTSQLVTEYNRGL 293
>gi|298491099|ref|YP_003721276.1| ribulose bisphosphate carboxylase small chain ['Nostoc azollae'
0708]
gi|298233017|gb|ADI64153.1| ribulose bisphosphate carboxylase small chain ['Nostoc azollae'
0708]
Length = 408
Score = 276 bits (706), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 139/292 (47%), Positives = 200/292 (68%), Gaps = 6/292 (2%)
Query: 46 YYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIM 105
YYIAP F+ L HI KN++ +L ++VPLILGI G KG+GKSFQ EL+F MGIE ++
Sbjct: 3 YYIAPSFLDKLAVHITKNFL-NLPGIRVPLILGIHGRKGEGKSFQCELVFDKMGIETTLI 61
Query: 106 SAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGN-TQMTVNNQ 164
S GELES AG+P +LIR RYR +++++ +GKM LMIND+DAG GRF TQ TVN Q
Sbjct: 62 SGGELESSDAGDPARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEGTQYTVNTQ 121
Query: 165 IVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQP 224
+V TLMN++D+PT V + + +S+ T R+PII TGNDFST+YAPL RDGRMEKFYW+P
Sbjct: 122 LVNATLMNIADSPTDVQLPGSY-DSNPTRRVPIIVTGNDFSTLYAPLTRDGRMEKFYWEP 180
Query: 225 NLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGV 284
N +D + +V ++ +D + + E+ +V F Q++DF+ LRSR YD I ++I I G
Sbjct: 181 NRDDKVGMVGGIFAEDALLQREIEQLVDNFAYQSIDFFSTLRSRIYDEQIREFIHTI-GF 239
Query: 285 ENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEY 336
EN+ ++++ + P F P ++ L++SG ++ EQ+ + ++L EY
Sbjct: 240 ENVSSRVVNSAEGP--PAFKRPNFSLSHLIDSGKFMVAEQKRVETSQLVDEY 289
>gi|434404079|ref|YP_007146964.1| ribulose bisphosphate carboxylase small subunit [Cylindrospermum
stagnale PCC 7417]
gi|428258334|gb|AFZ24284.1| ribulose bisphosphate carboxylase small subunit [Cylindrospermum
stagnale PCC 7417]
Length = 415
Score = 276 bits (705), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 142/294 (48%), Positives = 204/294 (69%), Gaps = 6/294 (2%)
Query: 46 YYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIM 105
YYIAP F+ L HI KN++ L V+VPLILGI G KG+GK+FQ EL+F+ MGIE +
Sbjct: 3 YYIAPRFLDKLGVHITKNFL-QLPGVRVPLILGIHGRKGEGKTFQCELVFEKMGIEVTQI 61
Query: 106 SAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGN-TQMTVNNQ 164
S GELES AG+P +LIR RYR +++++ +GKM LMIND+DAG GRF TQ TVN Q
Sbjct: 62 SGGELESPDAGDPARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEGTQYTVNTQ 121
Query: 165 IVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQP 224
+V TLMN++DNPT V + + +S +R+PII TGNDFST+YAPLIRDGRMEKFYW+P
Sbjct: 122 LVNATLMNIADNPTDVQLPGSY-DSTPLHRVPIIVTGNDFSTLYAPLIRDGRMEKFYWEP 180
Query: 225 NLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGV 284
+ +D + IV ++ +DG+++ +V +V TF NQ++DF+ ALRSR YD I ++I + G
Sbjct: 181 SRDDKVGIVGGIFAEDGLSQRQVEQLVDTFINQSVDFFSALRSRIYDEQIREFIHQV-GF 239
Query: 285 ENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYMK 338
E + +++ ++ P F P+ ++ L+E+G ++ EQQ + + L +Y +
Sbjct: 240 ERVSLRVVN--SAEKPPEFKKPDFSLSHLIEAGNLIVGEQQRVETSHLVDDYNR 291
>gi|209526170|ref|ZP_03274701.1| ribulose bisphosphate carboxylase small chain [Arthrospira maxima
CS-328]
gi|376005139|ref|ZP_09782687.1| Ribulose bisphosphate carboxylase/oxygenase activase [Arthrospira
sp. PCC 8005]
gi|423065450|ref|ZP_17054240.1| ribulose bisphosphate carboxylase/oxygenase activase [Arthrospira
platensis C1]
gi|209493426|gb|EDZ93750.1| ribulose bisphosphate carboxylase small chain [Arthrospira maxima
CS-328]
gi|375326497|emb|CCE18440.1| Ribulose bisphosphate carboxylase/oxygenase activase [Arthrospira
sp. PCC 8005]
gi|406713143|gb|EKD08317.1| ribulose bisphosphate carboxylase/oxygenase activase [Arthrospira
platensis C1]
Length = 434
Score = 276 bits (705), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 141/293 (48%), Positives = 205/293 (69%), Gaps = 8/293 (2%)
Query: 46 YYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIM 105
YYI+P F+ + HI KN++ + +KVPLILGI G KG+GK+FQ EL+F+ MGIEPV++
Sbjct: 3 YYISPRFLDKVSVHITKNFL-DIPRIKVPLILGIHGRKGEGKTFQCELVFKTMGIEPVMI 61
Query: 106 SAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGN-TQMTVNNQ 164
S GELES AG+P +L+R RYR A++ V+ +G+M + IND DAG GRF + TQ TVN Q
Sbjct: 62 SGGELESPDAGDPSRLLRLRYREAAEQVRVKGQMCAIFINDFDAGAGRFDSGTQYTVNTQ 121
Query: 165 IVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQP 224
+V TLMN++DNPT V + + E+ + +RIPII TGNDFST+YAPLIRDGRM+KFYW+P
Sbjct: 122 LVNATLMNIADNPTNVQLPGSYDETPL-HRIPIIITGNDFSTLYAPLIRDGRMDKFYWEP 180
Query: 225 NLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGV 284
+ ED + IV ++ D ++ ++ +V F QA+DF+ A+RSR YD I ++I G+
Sbjct: 181 SREDRIAIVRGIFADDSLSDSQIIKLVDDFTGQAIDFFSAMRSRIYDEQIREFIYH-QGL 239
Query: 285 ENLGNKLLKR-RKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEY 336
+ + +L+ K ELP P+ +++ L+ESG +++ EQQ I + +L +EY
Sbjct: 240 DKISRRLVNSVDKPPELPQ---PDFSLQHLIESGRAMVEEQQQIQKLRLVEEY 289
>gi|158334944|ref|YP_001516116.1| ribulose bisphosphate carboxylase activase [Acaryochloris marina
MBIC11017]
gi|158305185|gb|ABW26802.1| Ribulose bisphosphate carboxylase activase, putative [Acaryochloris
marina MBIC11017]
Length = 416
Score = 276 bits (705), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 142/294 (48%), Positives = 203/294 (69%), Gaps = 6/294 (2%)
Query: 46 YYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIM 105
YY++P F+ L HI KN++ L ++VPLILGI G KG+GKSFQ EL+F+ MGIEPV M
Sbjct: 3 YYLSPRFLDRLAVHITKNFM-DLPGLRVPLILGIHGRKGEGKSFQCELLFEQMGIEPVRM 61
Query: 106 SAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQ 164
SAGELES AG+P +LIR RYR A+++++ +GKM L+IND+DAG GR TQ TVN Q
Sbjct: 62 SAGELESPDAGDPVRLIRMRYREAAELIKVRGKMCVLLINDLDAGAGRMDQTTQYTVNTQ 121
Query: 165 IVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQP 224
+V GTLMN++DNPT V + + I R+PI+ TGNDFST+YAPL+RDGRM+KFYWQP
Sbjct: 122 LVNGTLMNIADNPTDVQLPGSYDTQPI-RRVPILVTGNDFSTLYAPLVRDGRMDKFYWQP 180
Query: 225 NLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGV 284
N ED L IV ++E D ++ + +V F +QA+DF+GALRSR YD + +I ++ G+
Sbjct: 181 NHEDRLGIVQGIFEPDRLSSSVIEQLVNHFADQAIDFFGALRSRIYDEQVRDFIRNL-GI 239
Query: 285 ENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYMK 338
N+ L+ ++++ + PP T++ L+ G +++ EQ + L++ Y+
Sbjct: 240 GNVSTYLVN-SPERQVQI-QPPALTLDYLINLGEAMVGEQDRLHHAGLAQAYLS 291
>gi|428215450|ref|YP_007088594.1| ribulose bisphosphate carboxylase small subunit [Oscillatoria
acuminata PCC 6304]
gi|428003831|gb|AFY84674.1| ribulose bisphosphate carboxylase small subunit [Oscillatoria
acuminata PCC 6304]
Length = 435
Score = 273 bits (699), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 139/296 (46%), Positives = 195/296 (65%), Gaps = 7/296 (2%)
Query: 46 YYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIM 105
YYIAP F+ L HI KN++ L + PLILGI G KG+GKSFQ EL+FQ M ++ + +
Sbjct: 3 YYIAPRFLNKLAVHITKNFL-DLPGINAPLILGIHGHKGEGKSFQCELVFQRMKVQAIHL 61
Query: 106 SAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRF-GNTQMTVNNQ 164
SAGELES AG+P +L+R RYR A+ ++ GK++ LMINDIDAG GR TQ TVN Q
Sbjct: 62 SAGELESPDAGDPSRLVRFRYREAADIITKHGKLAVLMINDIDAGAGRVDSGTQYTVNTQ 121
Query: 165 IVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQP 224
+V TLMN++DNPT V + + +S+ R+PII TGNDF T+YAPL+RDGRM+KFYW+P
Sbjct: 122 LVNATLMNIADNPTNVQLPGSY-DSEPLPRVPIIVTGNDFGTLYAPLVRDGRMDKFYWEP 180
Query: 225 NLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGV 284
N ED L IV+ ++ DG+ + ++ +V F Q++DF+ ALR+ YD I +I+ G
Sbjct: 181 NREDRLEIVNGIFTPDGLNRQQIEQLVSKFEGQSIDFFSALRASIYDEQILAFIEQT-GF 239
Query: 285 ENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYMKNI 340
+ +G LK E F P+ +E L+E G +++EQQ I E +L Y +++
Sbjct: 240 DKIG---LKVANSTEKHSFIKPDFRLEHLIEKGEQMVKEQQHIQELRLVAAYNRSL 292
>gi|443316141|ref|ZP_21045597.1| ribulose bisphosphate carboxylase small subunit [Leptolyngbya sp.
PCC 6406]
gi|442784241|gb|ELR94125.1| ribulose bisphosphate carboxylase small subunit [Leptolyngbya sp.
PCC 6406]
Length = 461
Score = 273 bits (698), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 141/297 (47%), Positives = 200/297 (67%), Gaps = 9/297 (3%)
Query: 46 YYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIM 105
YYI+P F+ L HI KNY++ L +V+VP+ILG+ G KG+GK+FQ EL+++ MG+E V +
Sbjct: 3 YYISPRFLDKLAIHITKNYLS-LPDVRVPVILGVHGRKGEGKTFQCELVYERMGVEVVAI 61
Query: 106 SAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGN-TQMTVNNQ 164
S GELES AG+P +LIR RYR A+++V+ +G M+ LMIND+DAG GRF TQ TVN Q
Sbjct: 62 SGGELESPDAGDPARLIRLRYREAAELVRVRGVMAVLMINDLDAGAGRFDALTQYTVNTQ 121
Query: 165 IVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQP 224
+V TLMN++DNPT V + + + I R+PII TGNDFST+Y PL+RDGRMEKFYW P
Sbjct: 122 LVNNTLMNIADNPTNVQLPGSYDDQPI-RRVPIIATGNDFSTLYEPLVRDGRMEKFYWMP 180
Query: 225 NLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGV 284
+ D + IV ++E D + + +V TF QA+DF+GALR+R YD + +I +G
Sbjct: 181 DRSDRIGIVAGIFEPDQLGTAAIEQLVDTFSQQAVDFFGALRARIYDEQVRDFIQSVG-- 238
Query: 285 ENLGNKLLKRRKDKEL-PVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYMKNI 340
+K+ +R + E P FT P T+ L+E G ++ EQQ + E +L +Y + +
Sbjct: 239 ---LDKVSQRVVNSETSPTFTRPTFTLSHLIEVGQQMVIEQQWLQEMRLGDQYNRAL 292
>gi|149392725|gb|ABR26165.1| ribulose bisphosphate carboxylase/oxygenase activase [Oryza sativa
Indica Group]
Length = 273
Score = 273 bits (697), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 131/253 (51%), Positives = 181/253 (71%), Gaps = 6/253 (2%)
Query: 86 GKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMIN 145
GKSFQ EL+F MGI P++MSAGELES AGEP KLIR+RYR A+ +++ +GKM CL IN
Sbjct: 1 GKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFIN 59
Query: 146 DIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDF 204
D+DAG GR G TQ TVNNQ+V TLMN++DNPT V + + + D R+PII TGNDF
Sbjct: 60 DLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKED-NPRVPIIVTGNDF 118
Query: 205 STIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGA 264
ST+YAPLIRDGRMEKFYW P +D + + ++ D + +++ IV +FP Q++DF+GA
Sbjct: 119 STLYAPLIRDGRMEKFYWAPTRDDRVGVCKGIFRTDNVPDEDIVKIVDSFPGQSIDFFGA 178
Query: 265 LRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQ 324
LR+R YD + KW+ D GVEN+G +L+ R+ P F P+ T+E L+E GY L++EQ
Sbjct: 179 LRARVYDDEVRKWVSDT-GVENIGKRLVNSREGP--PEFEQPKMTIEKLMEYGYMLVKEQ 235
Query: 325 QLIMETKLSKEYM 337
+ + +L+++Y+
Sbjct: 236 ENVKRVQLAEQYL 248
>gi|428210200|ref|YP_007094553.1| ribulose 1,5-bisphosphate carboxylase small subunit
[Chroococcidiopsis thermalis PCC 7203]
gi|428012121|gb|AFY90684.1| ribulose 1,5-bisphosphate carboxylase small subunit
[Chroococcidiopsis thermalis PCC 7203]
Length = 475
Score = 273 bits (697), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 142/298 (47%), Positives = 205/298 (68%), Gaps = 6/298 (2%)
Query: 45 DYYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVI 104
+YYIAP F+ + I KNY+ ++ ++VPLILG+ G KG+GKSFQ +L+F+ MGIE
Sbjct: 2 NYYIAPRFLEKIAVFITKNYL-NIPGIRVPLILGVHGRKGEGKSFQCDLVFEKMGIEITH 60
Query: 105 MSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGN-TQMTVNN 163
+S GELES AG+P +L+R RYR +++++ +GKM +MIND+DAG GRF TQ TVN
Sbjct: 61 ISGGELESPDAGDPSRLLRLRYRETAELIRVRGKMCAIMINDLDAGAGRFDEGTQYTVNT 120
Query: 164 QIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQ 223
Q+V TLMN++DNPT V + + E+ + +R+PII TGNDFST+YAPLIRDGRMEKFYWQ
Sbjct: 121 QLVNATLMNIADNPTNVQLPGSYDETPL-HRVPIIVTGNDFSTLYAPLIRDGRMEKFYWQ 179
Query: 224 PNLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGG 283
P+ D + IV +Y DG++ E+ +V TF NQ++DF+ ALRSR YD I +I I G
Sbjct: 180 PDRSDKVGIVAGIYSDDGLSSREIEQLVDTFSNQSVDFFSALRSRIYDEQIRDFIFKI-G 238
Query: 284 VENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYMKNID 341
+E + +++ P F+ P+ + L+E G +++EQQ + ++L KEY + +D
Sbjct: 239 IEQVSRRVVN--SADRPPEFSKPKFNLSRLIEMGNLMVKEQQQVQSSQLVKEYNRALD 294
>gi|434387097|ref|YP_007097708.1| ATP-dependent 26S proteasome regulatory subunit [Chamaesiphon
minutus PCC 6605]
gi|428018087|gb|AFY94181.1| ATP-dependent 26S proteasome regulatory subunit [Chamaesiphon
minutus PCC 6605]
Length = 302
Score = 272 bits (696), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 141/293 (48%), Positives = 201/293 (68%), Gaps = 5/293 (1%)
Query: 45 DYYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVI 104
DYYIAP F+ L HI KN++ L VKVPLILG+ G KG+GK+FQ EL+F M +E +
Sbjct: 2 DYYIAPAFLDKLAVHITKNFL-DLPGVKVPLILGVHGRKGEGKTFQCELVFDRMKVEAIH 60
Query: 105 MSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGN-TQMTVNN 163
+SAGELES AG+ +LIR RYR A+++++ +G+M+ L+INDIDAG GRF TQ TVN
Sbjct: 61 ISAGELESPDAGDSARLIRLRYREAAEIIKVRGRMAVLVINDIDAGAGRFDQGTQYTVNT 120
Query: 164 QIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQ 223
Q+V TLMN++D+PT V + + +S RIPII TGND ST+YAPLIRDGRMEK+YW
Sbjct: 121 QLVNATLMNIADHPTNVQLPGSY-DSTPLPRIPIIVTGNDLSTLYAPLIRDGRMEKYYWV 179
Query: 224 PNLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGG 283
P ED + IV ++ D I++ E+ ++V FP++A+DF+ A+R+R YD I +I + G
Sbjct: 180 PTREDKIGIVRGIFAPDNISEREIVNLVDRFPDRAVDFFAAMRARIYDEQIRDFIHKV-G 238
Query: 284 VENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEY 336
+E L +++ + P F P T+ L+E G L++EQ+ + E++L +EY
Sbjct: 239 LERLSIEVVNPASGIK-PTFPKPYFTLARLIEFGNLLVQEQKSVDESRLVEEY 290
>gi|359457374|ref|ZP_09245937.1| ribulose bisphosphate carboxylase small chain [Acaryochloris sp.
CCMEE 5410]
Length = 416
Score = 271 bits (694), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 140/293 (47%), Positives = 202/293 (68%), Gaps = 6/293 (2%)
Query: 46 YYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIM 105
YY++P F+ L HI KN++ L ++VPLILGI G KG+GKSFQ EL+F+ MGIEPV M
Sbjct: 3 YYLSPRFLDRLAVHITKNFM-DLPGLRVPLILGIHGRKGEGKSFQCELLFEQMGIEPVRM 61
Query: 106 SAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQ 164
SAGELES AG+P +LIR RYR A+++++ +GKM L+IND+DAG R TQ TVN Q
Sbjct: 62 SAGELESPDAGDPVRLIRMRYREAAELIKVRGKMCVLLINDLDAGASRMDQTTQYTVNTQ 121
Query: 165 IVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQP 224
+V GTLMN++DNPT V + + I R+PI+ TGNDFST+YAPL+RDGRM+KFYWQP
Sbjct: 122 LVNGTLMNIADNPTDVQLPGSYDTQPI-RRVPILVTGNDFSTLYAPLVRDGRMDKFYWQP 180
Query: 225 NLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGV 284
+ ED L IV ++E D ++ + +V F +QA+DF+GALRSR YD + +I ++ G+
Sbjct: 181 SDEDRLGIVQGIFEPDRLSSSVIEQLVNHFADQAIDFFGALRSRIYDEQVRDFIRNL-GI 239
Query: 285 ENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYM 337
N+ L+ ++++ + PP ++ L+E G +++ EQ + L++ Y+
Sbjct: 240 GNVSTYLVN-SPERQVQI-QPPALALDYLIELGEAMVGEQDRLHHAGLAQAYL 290
>gi|308803006|ref|XP_003078816.1| 26S proteasome regulatory complex, ATPase RPT4 (ISS) [Ostreococcus
tauri]
gi|116057269|emb|CAL51696.1| 26S proteasome regulatory complex, ATPase RPT4 (ISS) [Ostreococcus
tauri]
Length = 584
Score = 271 bits (692), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 145/340 (42%), Positives = 215/340 (63%), Gaps = 24/340 (7%)
Query: 8 RAGVIDPLFAGNFLGKDSDIVF-DYRQKVTRSFEYLQGDYYIAPVFMASLLCHIVKNYIA 66
R+GV + LF G LG D+D+ ++R+ RSF ++G++Y+ FM + H+ KN +A
Sbjct: 46 RSGVEETLFKGVVLGVDADVASGEHREGGFRSFGNVEGEFYVPERFMERVATHVAKNLLA 105
Query: 67 H---LLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIR 123
L + K ++LGIWG KG GK+F EL + MG+ P++ SAGELE AGEPG ++R
Sbjct: 106 DRDGLRSAKPAVMLGIWGHKGCGKTFNVELACKRMGLMPIVTSAGELEDGTAGEPGAMLR 165
Query: 124 ERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIG 183
RY TA++ ++ G++SCL+INDIDAG+GRF + TVNNQI GTLMN+ DNPT VS G
Sbjct: 166 RRYLTAARAMRETGRLSCLIINDIDAGIGRFRDDLGTVNNQITHGTLMNICDNPTLVSEG 225
Query: 184 QDWR-ESDITN-RIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDG 241
WR ++ +TN R+PII TGNDFS +YAPL RDGRM D+ + + DG
Sbjct: 226 NAWRHDAKMTNARVPIIVTGNDFSRLYAPLTRDGRM----------DLWICYTAITKDDG 275
Query: 242 ITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGV---ENLGNKLLKRRKDK 298
+++ + ++V TFP Q LDF+GA+R+R YD ++ +I D+G V E L + +RK
Sbjct: 276 LSEKDCETLVDTFPQQPLDFFGAIRARVYDDAVRDFILDVGLVGMNEALVGGVESKRK-- 333
Query: 299 ELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYMK 338
++E L+++G+ L EQ+ + +L++EYM+
Sbjct: 334 ---TLGKVNASLERLIQAGHELCEEQENVSNIQLAREYMR 370
>gi|254416331|ref|ZP_05030084.1| ribulose bisphosphate carboxylase, small subunit, putative
[Coleofasciculus chthonoplastes PCC 7420]
gi|196176769|gb|EDX71780.1| ribulose bisphosphate carboxylase, small subunit, putative
[Coleofasciculus chthonoplastes PCC 7420]
Length = 447
Score = 270 bits (691), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 143/298 (47%), Positives = 207/298 (69%), Gaps = 6/298 (2%)
Query: 46 YYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIM 105
YYIAP F L HI KNY+ L V+VPLILGI G KG+GKSFQ EL+F+ MGI + +
Sbjct: 8 YYIAPSFRDKLAVHITKNYL-ELEGVRVPLILGIHGRKGEGKSFQCELVFEQMGIGIIHI 66
Query: 106 SAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRF-GNTQMTVNNQ 164
S GELES AG+P +LIR RYR A+++++ QGKM LMIND+DAG+GRF TQ TVN Q
Sbjct: 67 SGGELESPDAGDPARLIRLRYREAAEMIKVQGKMCGLMINDLDAGVGRFDSTTQYTVNTQ 126
Query: 165 IVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQP 224
+V TLMN++D+PT V + + +++ +R+PII TGNDFST+YAPLIR+GRMEK+YW+P
Sbjct: 127 LVSATLMNIADHPTDVQLPGSY-DANPLHRVPIIVTGNDFSTLYAPLIREGRMEKYYWEP 185
Query: 225 NLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGV 284
+ E+ + IV ++ DG+ + ++ +V FP+QA+DF+ ALRSR YD+ I +I D+ G+
Sbjct: 186 SREERIGIVGGIFAADGLPRRDIEQLVDQFPDQAIDFFSALRSRIYDQQILHFIHDV-GL 244
Query: 285 ENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYMKNIDD 342
+ + +++ R + P F P + L+E G ++ EQ+ + +T L +EY K + +
Sbjct: 245 DQVSFRVV--RSTEAPPEFEKPNFDISHLIEFGQVMIGEQRQVEQTGLVREYNKALRE 300
>gi|303281566|ref|XP_003060075.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226458730|gb|EEH56027.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 390
Score = 270 bits (689), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 142/318 (44%), Positives = 201/318 (63%), Gaps = 22/318 (6%)
Query: 37 RSFEYLQGDYYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQ 96
RS +QGDY++ F H+VKN +A N++ PLILGIWGGKG GKSF EL +
Sbjct: 7 RSLANVQGDYHVPERFRDKFATHLVKNALASS-NLQTPLILGIWGGKGCGKSFNVELCCR 65
Query: 97 AMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGN 156
MG+ P++ SAGELE AGEPG L+R RY AS +++ GK + D+DAG+GR +
Sbjct: 66 DMGVTPIVTSAGELEDPVAGEPGALLRRRYLAASTAIRHTGKPA-----DLDAGIGRHRD 120
Query: 157 TQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESD--ITNRIPIIFTGNDFSTIYAPLIRD 214
+ TVNNQIV TLMNL D+PTRVS+G +WR D R+PI+ TGND S +YAPL R
Sbjct: 121 DKTTVNNQIVAATLMNLCDDPTRVSVGGEWRADDRARCERVPIVVTGNDLSRVYAPLTRS 180
Query: 215 GRMEKFYWQPNLEDILNIVHRMYEKD-------GITKDEVGSIVKTFPNQALDFYGALRS 267
GRM+ + W+P ++I +VH++ + D GI ++ V F Q LDF+GA RS
Sbjct: 181 GRMDLWMWEPTRDEIAEMVHQLLKDDKRPGGYGGI--EDARRFVDAFDAQPLDFFGAARS 238
Query: 268 RTYDRSISKWIDDIGGVENLGNKLLK---RRKDKELPVFTPPEKTVEALLESGYSLLREQ 324
R D + ++D + GVE+LG +LL + K K + V + ++EAL+ +G ++ REQ
Sbjct: 239 RCVDDDVRAFVDRV-GVESLGTRLLSSGDKIKSKSV-VVGRGDVSLEALVRAGRAIEREQ 296
Query: 325 QLIMETKLSKEYMKNIDD 342
Q +++ +LS+EY+ N DD
Sbjct: 297 QNVLDVRLSREYLANWDD 314
>gi|116791872|gb|ABK26141.1| unknown [Picea sitchensis]
Length = 363
Score = 264 bits (675), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 134/256 (52%), Positives = 177/256 (69%), Gaps = 9/256 (3%)
Query: 10 GVIDPLFAGNFLGKDSDIV---FDYRQKVTRSFEY--LQGDYYIAPVFMASLLCHIVKNY 64
G +D LF ++V +DY R++++ YYIAP FM LL HI KN+
Sbjct: 93 GKVDSLFQAPMGSGTHNVVMSTYDYISTAQRTYDFDNTMDGYYIAPSFMDKLLVHISKNF 152
Query: 65 IAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRE 124
+ +L N+KVPLILGIWGGKGQGKSFQ EL+F +GI P++MSAGELES AGEP KL+R+
Sbjct: 153 M-NLPNIKVPLILGIWGGKGQGKSFQCELVFAKLGINPIMMSAGELESGDAGEPAKLLRK 211
Query: 125 RYRTASQVVQNQGKMSCLMINDIDAGLGRFGN-TQMTVNNQIVVGTLMNLSDNPTRVSIG 183
RYR AS +V+ +GKM L IND++AG GR G+ TQ TVNNQ+V TLMN++DNPT V +
Sbjct: 212 RYREASDIVK-KGKMCVLFINDLEAGAGRMGSTTQYTVNNQMVNATLMNIADNPTNVQLP 270
Query: 184 QDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGIT 243
+ + D R+PI+ TGNDFST+YAPLIRDGRMEKFYW P +D + + ++ D +
Sbjct: 271 GMYNKQD-NPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCQGIFRADNVH 329
Query: 244 KDEVGSIVKTFPNQAL 259
D+V +V TFP Q++
Sbjct: 330 PDDVVRLVDTFPGQSI 345
>gi|410927480|gb|AFV93499.1| chloroplast ribulose bisphosphate carboxylase/oxygenase activase
beta1, partial [Gossypium barbadense]
Length = 236
Score = 262 bits (670), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 127/215 (59%), Positives = 160/215 (74%), Gaps = 4/215 (1%)
Query: 46 YYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIM 105
+YIAP FM L+ HI KNY+ L N+KVPLILGIWGGKGQGKSFQ EL+F MGI P++M
Sbjct: 25 FYIAPAFMDKLVVHITKNYMT-LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 83
Query: 106 SAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRF-GNTQMTVNNQ 164
SAGELES AGEP KLIR+RYR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ
Sbjct: 84 SAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQ 142
Query: 165 IVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQP 224
+V TLMN++DNPT V + + + + R+PII TGNDFST+YAPLIRDGRMEKFYW P
Sbjct: 143 MVNATLMNIADNPTNVQLPGMYNKEE-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 201
Query: 225 NLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQAL 259
ED + + ++ D + D++ +V TFP Q++
Sbjct: 202 TREDRIGVCTGIFRTDNVPVDDIVKLVDTFPGQSI 236
>gi|410927496|gb|AFV93500.1| chloroplast ribulose bisphosphate carboxylase/oxygenase activase
beta2, partial [Gossypium barbadense]
Length = 250
Score = 261 bits (666), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 132/238 (55%), Positives = 168/238 (70%), Gaps = 16/238 (6%)
Query: 35 VTRSFEYL-QG-----------DYYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGG 82
V S+EYL QG +YIAP FM L+ HI KN++ L N+KVPLILG+WGG
Sbjct: 16 VMSSYEYLSQGLRTYDLDNNMDGFYIAPAFMDKLVVHITKNFMT-LPNIKVPLILGVWGG 74
Query: 83 KGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCL 142
KGQGKSFQ EL+F MGI P++MSAGELES AGEP KLIR+RYR A+ +++ +GKM CL
Sbjct: 75 KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCL 133
Query: 143 MINDIDAGLGRF-GNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTG 201
IND+DAG GR G TQ TVNNQ+V TLMN++DNPT V + + + + R+PII TG
Sbjct: 134 FINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEE-NPRVPIIVTG 192
Query: 202 NDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQAL 259
NDFST+YAPLIRDGRMEKFYW P ED + + ++ D + D++ +V TFP Q++
Sbjct: 193 NDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCTGIFRTDNVPVDDLVKLVDTFPGQSI 250
>gi|302836245|ref|XP_002949683.1| hypothetical protein VOLCADRAFT_42653 [Volvox carteri f.
nagariensis]
gi|300265042|gb|EFJ49235.1| hypothetical protein VOLCADRAFT_42653 [Volvox carteri f.
nagariensis]
Length = 323
Score = 260 bits (665), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 151/331 (45%), Positives = 200/331 (60%), Gaps = 16/331 (4%)
Query: 18 GNFLGKDSDIV-FDYRQKVTRSFEYLQGDYYIAPVFMASLLCHIVKNYIAHL----LNVK 72
G LG SDI R R+F + GDYY+AP F+ + H+ KNY+ L NV+
Sbjct: 1 GEVLGHKSDIADGTLRAYDFRTFNNIVGDYYVAPAFLEKVALHMAKNYLYDLGAIASNVR 60
Query: 73 VPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQV 132
VPLILGIWG KG GK+FQTEL + +G E V+MS+GELE E AG PGKLIRERYR AS++
Sbjct: 61 VPLILGIWGEKGMGKTFQTELALKQLGAETVVMSSGELEHEWAGTPGKLIRERYRKASEM 120
Query: 133 VQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDIT 192
+ +GKM+ L+I+DIDAGLG F + Q+TVNNQIV+GTLMN+ DNP VS+GQDWR D
Sbjct: 121 SKVRGKMTALLIHDIDAGLGHFDHVQVTVNNQIVIGTLMNICDNPNVVSVGQDWRSEDRI 180
Query: 193 NRIPIIFTGNDFSTIYAP-LIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITKDEVGSIV 251
R PII TG + ++ L+R + QP+ + L+ + T V + V
Sbjct: 181 RRTPIIVTGRGPTRRFSRYLLRVTSVT----QPHSTNHLSNCYLPTNTPCCTY--VYTYV 234
Query: 252 KTFPNQALDFYGALRSRTYDRSISKWI--DDIGGVENLGNKLLKRRKDKELPVFTPPEKT 309
F Q LDF+GALR+ TYD I +WI D GG+ G + LP F P T
Sbjct: 235 CRFKRQPLDFFGALRASTYDEQIRQWIRRDITGGL--WGEVCVGGTDKSGLPRFEPVRLT 292
Query: 310 VEALLESGYSLLREQQLIMETKLSKEYMKNI 340
V+ L+ G L EQQ ++ KLS +Y++++
Sbjct: 293 VDMLVAEGERLENEQQQVLNHKLSADYLRHV 323
>gi|255088359|ref|XP_002506102.1| ribulose bisphosphate carboxylase/oxygenase activase [Micromonas
sp. RCC299]
gi|226521373|gb|ACO67360.1| ribulose bisphosphate carboxylase/oxygenase activase [Micromonas
sp. RCC299]
Length = 395
Score = 258 bits (660), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 143/350 (40%), Positives = 210/350 (60%), Gaps = 23/350 (6%)
Query: 9 AGVIDPLFAGNFLGKDSDIVF-DYRQK-VTRSFEYLQ--GDYYIAPVFMASLLCHIVKNY 64
+GV + LF G+ LG D+D+ D R + + F ++ Y+I F+ HI KN
Sbjct: 50 SGVREELFKGSILGVDADVATGDLRARGEIKQFGDIKDHASYHIPDRFLDRFATHIAKNL 109
Query: 65 I----AHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGK 120
+ A+L +V PLIL +WGGKG GKSF EL + +G+ PV++SAGELE AGEPG
Sbjct: 110 LIDGGANLGSV--PLILCVWGGKGCGKSFNLELCCKRLGVFPVVVSAGELEDPTAGEPGA 167
Query: 121 LIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRV 180
++R RY TA + + G +C+++ND+DAG+GRF + + TVNNQI TLMNL D P RV
Sbjct: 168 MLRRRYLTAGKHMSASGAPTCVIVNDVDAGVGRFKDDKATVNNQIAQATLMNLCDEPNRV 227
Query: 181 SIGQDWRESDITN--RIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYE 238
S+G +WR D + R+PI+ T ND S +YAPL R+GR + + W+P +I +VH +
Sbjct: 228 SVGGEWRSDDRAHCPRVPIVVTANDPSVLYAPLTRNGRTDLWMWEPTRGEITKMVHDALD 287
Query: 239 KD---GITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRR 295
G D + +V FP+Q LDF+GA+RSR D ++ ++I + G+ENLG L R
Sbjct: 288 GAPGYGGESDAL-ELVNAFPSQPLDFFGAVRSRCADDAVRRFIARV-GLENLGATLCGHR 345
Query: 296 KDK------ELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYMKN 339
+ T + ++ +LLE+G + REQQ +M+ LS+EY+ N
Sbjct: 346 GREGGDPGWSASTLTGMDASLRSLLEAGAEIAREQQNVMDVALSREYVAN 395
>gi|149941208|emb|CAO02536.1| putative rubisco activase [Vigna unguiculata]
Length = 214
Score = 245 bits (625), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 122/195 (62%), Positives = 150/195 (76%), Gaps = 6/195 (3%)
Query: 36 TRSFEYLQGDYYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIF 95
T +F+ ++ YYIAP FM L+ HI KN++ L N+KVPLILGIWGGKGQGKSFQ EL+F
Sbjct: 20 TYNFDNMKDGYYIAPAFMDKLVVHITKNFMT-LPNIKVPLILGIWGGKGQGKSFQCELVF 78
Query: 96 QAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRF- 154
MGI P++MSAGELES AGEP KLIR+RYR A+ +++ +GKM L IND+DAG GR
Sbjct: 79 AKMGINPIVMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCALFINDLDAGAGRLG 137
Query: 155 GNTQMTVNNQIVVGTLMNLSDNPTRVSI-GQDWRESDITNRIPIIFTGNDFSTIYAPLIR 213
G TQ TVNNQ+V TLMN++DNPT V + G +E ++ R+PII TGNDFST+YAPLIR
Sbjct: 138 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENL--RVPIIVTGNDFSTLYAPLIR 195
Query: 214 DGRMEKFYWQPNLED 228
DGRMEKFYW P +D
Sbjct: 196 DGRMEKFYWAPTRDD 210
>gi|149941212|emb|CAO02538.1| putative rubisco activase [Vigna unguiculata]
Length = 194
Score = 242 bits (617), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 120/198 (60%), Positives = 150/198 (75%), Gaps = 6/198 (3%)
Query: 42 LQGDYYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIE 101
++ YYIAP FM L+ HI KN++ L N+KVPLILGIWGGKGQGKSFQ EL+F MGI
Sbjct: 1 MKDGYYIAPAFMDKLVVHITKNFMT-LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGIN 59
Query: 102 PVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRF-GNTQMT 160
P++MSAGELES AGEP KLIR+RYR A+ +++ +GKM L IND+DAG GR G TQ T
Sbjct: 60 PIVMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCALFINDLDAGAGRLGGTTQYT 118
Query: 161 VNNQIVVGTLMNLSDNPTRVSI-GQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEK 219
VNNQ+V TLMN++DNPT V + G +E ++ R+PII TGNDFST+YAPLIRDGRMEK
Sbjct: 119 VNNQMVNATLMNIADNPTNVQLPGMYNKEENL--RVPIIVTGNDFSTLYAPLIRDGRMEK 176
Query: 220 FYWQPNLEDILNIVHRMY 237
FYW P +D + + ++
Sbjct: 177 FYWAPTRDDRVGVCKGIF 194
>gi|327323113|gb|AEA48974.1| rubisco activase, partial [Rosa roxburghii]
Length = 265
Score = 239 bits (611), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 127/291 (43%), Positives = 172/291 (59%), Gaps = 56/291 (19%)
Query: 47 YIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMS 106
YIAP FM L+ HI KN+++ L N+KVPLILGIWGGKGQGKSFQ EL+F MGI P++MS
Sbjct: 11 YIAPAFMDKLVVHITKNFMS-LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 69
Query: 107 AGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIV 166
AGELES AGEP KLIR+RY GR+
Sbjct: 70 AGELESGNAGEPAKLIRQRYLGRDHA-------------------GRY------------ 98
Query: 167 VGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNL 226
N +NP R+PII TGNDFST+YAPLIRDGRMEKFYW P
Sbjct: 99 -----NKEENP----------------RVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTR 137
Query: 227 EDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVEN 286
+D + + +++ D + + ++ +V TFP Q++DF+GALR+R YD + KWI + GV+
Sbjct: 138 DDRIGVCTGIFKTDSVAQSDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGV-GVDG 196
Query: 287 LGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYM 337
+G KL+ ++ P F P+ T+E LLE G L++EQ+ + +L+ +Y+
Sbjct: 197 VGKKLVNSKEGP--PTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADQYL 245
>gi|412986205|emb|CCO17405.1| predicted protein [Bathycoccus prasinos]
Length = 596
Score = 238 bits (606), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 136/352 (38%), Positives = 199/352 (56%), Gaps = 33/352 (9%)
Query: 8 RAGVIDPLFAGNFLGKDSDIVF-DYRQKVTRSFEYLQGDYYIAPV-FMASLLCHIVKNYI 65
++GV + LF + D+DI + R + + + D + P + + + KNY+
Sbjct: 41 KSGVTEELFMNSV---DADIATGEMRVNEFKEMKSINADDFTVPERLLERIGTFLTKNYL 97
Query: 66 AHL--------LNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGE 117
H + PL+LGIWGGKG GKSF EL +G+ P++ SAGELE AGE
Sbjct: 98 MHYQAKTFMKKRTIVSPLVLGIWGGKGCGKSFNVELACAKLGVLPIVTSAGELEDATAGE 157
Query: 118 PGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGN-TQMTVNNQIVVGTLMNLSDN 176
PGKL+R RY A ++ + G +CL+INDIDAG+GRF + T TVNNQIV GTLMN++DN
Sbjct: 158 PGKLLRRRYLAAGKMTRETGVPTCLIINDIDAGVGRFKHTTSSTVNNQIVQGTLMNIADN 217
Query: 177 PTRVSIGQDWRESDITN------RIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDIL 230
PT V + ++ I R+P+I TGNDFS +YAPL RDGRM+KF+W+P+ E+I+
Sbjct: 218 PTNV-----YEDTSIVGNRASVPRVPVIVTGNDFSRLYAPLARDGRMDKFFWEPSREEIV 272
Query: 231 NIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVEN---L 287
I+ ++ + G+ K + +V FPNQ LDF+ A+R+R D + + VEN
Sbjct: 273 GIMTPIFAQHGLDKRDTEKLVSHFPNQPLDFFSAVRNRAIDAFVLDFC-----VENEMAF 327
Query: 288 GNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYMKN 339
+ LL K + + E L + + EQQ + +LS+EY+ N
Sbjct: 328 TSALLDANKSSSQSKVSERTVSYETFLSAARYVQNEQQNVNNLQLSREYLAN 379
>gi|6967045|emb|CAB72439.1| rubisco activase [Pinus halepensis]
Length = 226
Score = 237 bits (604), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 122/219 (55%), Positives = 156/219 (71%), Gaps = 9/219 (4%)
Query: 10 GVIDPLFAGNFLGKDSDIV---FDYRQKVTRSF--EYLQGDYYIAPVFMASLLCHIVKNY 64
G +D LF + + +DY R++ + + YYIAP FM L+ HI KN+
Sbjct: 11 GKVDSLFQAPMGSGTHNAIMSSYDYISTAQRTYSLDNMMDGYYIAPAFMDKLVVHISKNF 70
Query: 65 IAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRE 124
+ +L N+KVPLILGIWGGKGQGKSFQ EL+F +GI P++MSAGELES AGEP KLIR+
Sbjct: 71 M-NLPNIKVPLILGIWGGKGQGKSFQCELVFAKLGINPIMMSAGELESGDAGEPAKLIRK 129
Query: 125 RYRTASQVVQNQGKMSCLMINDIDAGLGRFGN-TQMTVNNQIVVGTLMNLSDNPTRVSIG 183
RYR A+ +V+ +GKM L IND+DAG GR G+ TQ TVNNQ+V TLMN++DNPT V +
Sbjct: 130 RYREAADIVK-KGKMCVLFINDLDAGAGRMGSTTQYTVNNQMVNATLMNIADNPTNVQLP 188
Query: 184 QDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYW 222
+ + + R+PI+ TGNDFST+YAPLIRDGRMEKFYW
Sbjct: 189 GMYNKEE-NPRVPIVVTGNDFSTLYAPLIRDGRMEKFYW 226
>gi|282898324|ref|ZP_06306315.1| AAA ATPase, central region protein [Raphidiopsis brookii D9]
gi|281196855|gb|EFA71760.1| AAA ATPase, central region protein [Raphidiopsis brookii D9]
Length = 362
Score = 218 bits (555), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 113/240 (47%), Positives = 162/240 (67%), Gaps = 5/240 (2%)
Query: 98 MGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGN- 156
MG+ ++S GELES AG+P +LIR RYR +++V+ +GKM LMIND+DAG GRF
Sbjct: 1 MGVGVTLISGGELESPDAGDPARLIRLRYRETAELVKVRGKMCVLMINDLDAGAGRFDEG 60
Query: 157 TQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGR 216
TQ TVN Q+V TLMN++D+PT V + + I R+PII TGNDFST+YAPLIRDGR
Sbjct: 61 TQYTVNTQLVNATLMNIADSPTDVQLPGSYDAKPI-RRVPIIVTGNDFSTLYAPLIRDGR 119
Query: 217 MEKFYWQPNLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISK 276
MEKFYW+PN +D + IV ++ +DG++ E+ +V TFP+Q++DF+ ALRSR YD I
Sbjct: 120 MEKFYWEPNHDDKVGIVGGIFAEDGLSPVEIEQLVNTFPHQSIDFFSALRSRIYDEQIRD 179
Query: 277 WIDDIGGVENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEY 336
+I +I G + + +++ + P F PE T+ L+E+G ++ EQ+ + + L EY
Sbjct: 180 FIHEI-GYDRVSMRVVNSMEPP--PQFQKPEFTLFHLIEAGNVMVGEQKHVESSHLVAEY 236
>gi|100380|pir||S25484 ribulose-bisphosphate carboxylase activase (EC 6.3.4.-) (clone
TA1.1) - common tobacco (fragment)
gi|19992|emb|CAA78704.1| ribulose bisphosphate carboxylase activase [Nicotiana tabacum]
Length = 232
Score = 213 bits (541), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 107/220 (48%), Positives = 149/220 (67%), Gaps = 6/220 (2%)
Query: 120 KLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPT 178
KLI +RYR A+++++ +G M CL IND+DAG GR G TQ TVNNQ+V TLMN++DNPT
Sbjct: 1 KLISQRYREAAEIIR-KGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT 59
Query: 179 RVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYE 238
V + + + + R+PII TGNDFST+YAPLIRDGRMEKFYW P ED + + ++
Sbjct: 60 NVQLPGMYNKQE-NARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR 118
Query: 239 KDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDK 298
D + ++ V IV TFP Q++DF+GALR+R YD + KW+ G+E +G+KLL
Sbjct: 119 TDNVPEEAVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVSGT-GIEAIGDKLLNSFDGP 177
Query: 299 ELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYMK 338
P F P+ TVE LLE G L++EQ+ + +L++ Y+K
Sbjct: 178 --PTFEQPKMTVEKLLEYGNMLVQEQENVKRVQLAETYLK 215
>gi|37522136|ref|NP_925513.1| ribulose-bisphosphate carboxylase activase, partial [Gloeobacter
violaceus PCC 7421]
gi|35213136|dbj|BAC90508.1| ribulose-bisphosphate carboxylase activase [Gloeobacter violaceus
PCC 7421]
Length = 294
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 116/300 (38%), Positives = 180/300 (60%), Gaps = 17/300 (5%)
Query: 46 YYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIM 105
Y+I F ++ HI KNY A L V+ PLILGI G KG+GKSF + + Q + +++
Sbjct: 4 YFIPDRFRDRIILHIAKNYAA-LPKVQTPLILGIHGPKGEGKSFMVDRVLQELQANVIVI 62
Query: 106 SAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRF-GNTQMTVNNQ 164
S+ ELES AGEPG+LIR RYR A+++V+ +G+++ ++I+DIDAG G + TQ TVN Q
Sbjct: 63 SSSELESPDAGEPGRLIRLRYREAAELVKVRGRVAAIVIHDIDAGAGFWSATTQYTVNTQ 122
Query: 165 IVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQP 224
+V LM ++DNPT V + + + + RIP + TGNDFS +YAPL+RDGRM KF W+P
Sbjct: 123 LVNAALMAIADNPTNVQLPGSYDPTPLP-RIPFVVTGNDFSKLYAPLVRDGRMSKFSWEP 181
Query: 225 NLEDILNIVHRMYEKDG--ITKDEVGSIVKTFPNQALDFYGALRSRTYD----RSISKWI 278
+ IV ++ +DG + + ++ +++ F Q +DF+ A+RSR YD + + W
Sbjct: 182 TFAEKSEIVAHLFAEDGAALGRYDLERLIQRFGAQPVDFFAAIRSRAYDDMLLQQVKAW- 240
Query: 279 DDIGGVENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYMK 338
G+EN+ L+ + P F ++ L G ++ +QQ I E+ L + Y +
Sbjct: 241 ----GLENVSRNLVN--HGGQPPRFEAVRLDLDRCLRWGEQIMSDQQAI-ESGLVEAYTR 293
>gi|117661805|gb|ABK55669.1| chloroplast rubisco activase [Cucumis sativus]
Length = 150
Score = 202 bits (515), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 97/152 (63%), Positives = 119/152 (78%), Gaps = 3/152 (1%)
Query: 77 LGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQ 136
LG+WGGKGQG+SFQ EL+F MGI P++MSAGELES AGEP KLIR+RYR A+ +++ +
Sbjct: 1 LGVWGGKGQGRSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-K 59
Query: 137 GKMSCLMINDIDAGLGRF-GNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRI 195
GKM CL IND+DAG GR G TQ TVNNQ+V TLMN++DNPT V + + + + R+
Sbjct: 60 GKMCCLFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEE-NPRV 118
Query: 196 PIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLE 227
PII TGNDFST+YAPLIRDGRM+KFYW P E
Sbjct: 119 PIIVTGNDFSTLYAPLIRDGRMDKFYWAPTRE 150
>gi|154259484|gb|ABS72022.1| putative ribulose-1,5-bisphosphate carboxylase/oxygenase activase
[Olea europaea]
Length = 261
Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 100/214 (46%), Positives = 145/214 (67%), Gaps = 6/214 (2%)
Query: 127 RTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIGQD 185
R A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ+V TLMN++DNPT V +
Sbjct: 1 REAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGM 59
Query: 186 WRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITKD 245
+ + + R+PII TGNDFST+YAPLIRDGRMEKFYW P ED + + ++ D + +
Sbjct: 60 YNKEE-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDDVPDE 118
Query: 246 EVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVFTP 305
V +V +FP Q++DF+GALR+R YD + KWI + GV+N+G KL+ R+ P F
Sbjct: 119 HVVKLVDSFPGQSIDFFGALRARVYDDEVRKWIGGV-GVDNIGKKLVNSREGP--PTFDQ 175
Query: 306 PEKTVEALLESGYSLLREQQLIMETKLSKEYMKN 339
P+ ++E LLE G L++EQ+ + +L+ +Y+ +
Sbjct: 176 PKMSLEKLLEYGNMLVQEQENVKRVQLADQYLSS 209
>gi|110740175|dbj|BAF01986.1| Rubisco activase [Arabidopsis thaliana]
Length = 259
Score = 197 bits (500), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 97/203 (47%), Positives = 138/203 (67%), Gaps = 5/203 (2%)
Query: 136 QGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNR 194
+GKM CL IND+DAG GR G TQ TVNNQ+V TLMN++DNPT V + + + + R
Sbjct: 4 KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEE-NAR 62
Query: 195 IPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITKDEVGSIVKTF 254
+PII TGNDFST+YAPLIRDGRMEKFYW P ED + + ++ D I +++ ++V F
Sbjct: 63 VPIICTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDKIKDEDIVTLVDQF 122
Query: 255 PNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVFTPPEKTVEALL 314
P Q++DF+GALR+R YD + K+++ + GVE +G +L+ R+ PVF PE T E L+
Sbjct: 123 PGQSIDFFGALRARVYDDEVRKFVESL-GVEKIGKRLVNSREGP--PVFEQPEMTYEKLM 179
Query: 315 ESGYSLLREQQLIMETKLSKEYM 337
E G L+ EQ+ + +L++ Y+
Sbjct: 180 EYGNMLVMEQENVKRVQLAETYL 202
>gi|290760300|gb|ADD54590.1| putative ribulose-1,5-bisphosphate carboxylase/oxygenase activase 1
[Linum usitatissimum]
Length = 178
Score = 194 bits (493), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 95/157 (60%), Positives = 120/157 (76%), Gaps = 5/157 (3%)
Query: 29 FDYRQKVTRSFEY--LQGDYYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQG 86
+DY K R++++ G +YIAP FM L+ HI KN++ +L N+KVPLILG+WGGKGQG
Sbjct: 22 YDYISKGLRTYDFDNTMGGFYIAPAFMDKLVVHITKNFL-NLPNIKVPLILGVWGGKGQG 80
Query: 87 KSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMIND 146
KSFQ EL+F MGI P++MSAGELES AGEP KLIR+RYR AS +++ +GKM CL IND
Sbjct: 81 KSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREASDIIK-KGKMCCLFIND 139
Query: 147 IDAGLGRF-GNTQMTVNNQIVVGTLMNLSDNPTRVSI 182
+DAG GR G TQ TVNNQ+V TLMN++DNPT V +
Sbjct: 140 LDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQL 176
>gi|119855475|gb|ABM01871.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase
activase [Morus alba var. multicaulis]
Length = 246
Score = 190 bits (482), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 95/195 (48%), Positives = 133/195 (68%), Gaps = 5/195 (2%)
Query: 144 INDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGN 202
IND+DAG GR G TQ TVNNQ+V TLMN++DNPT V + + + + R+PII TGN
Sbjct: 1 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEE-NPRVPIIVTGN 59
Query: 203 DFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFY 262
DFST+YAPLIRDGRMEKFYW P ED + + ++ D + ++++ IV TFP Q++DF+
Sbjct: 60 DFSTLYAPLIRDGRMEKFYWAPTREDRIGVCTGIFRSDHVPEEDIVKIVDTFPGQSIDFF 119
Query: 263 GALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLR 322
GALR+R YD + KWI + GVE +G KL+ ++ P F P+ TVE LLE G L++
Sbjct: 120 GALRARVYDDEVRKWISGV-GVETIGKKLVNSKEGP--PTFDQPKMTVEKLLEYGNMLVQ 176
Query: 323 EQQLIMETKLSKEYM 337
EQ+ + +L+ +Y+
Sbjct: 177 EQENVKRVQLADKYL 191
>gi|307104587|gb|EFN52840.1| hypothetical protein CHLNCDRAFT_26386, partial [Chlorella
variabilis]
Length = 239
Score = 189 bits (481), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 97/247 (39%), Positives = 157/247 (63%), Gaps = 11/247 (4%)
Query: 98 MGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNT 157
MG+ PV +SAGELE E AGEPG+ +RERY A++ ++ G+ +CL+I+D+DAG+G F NT
Sbjct: 1 MGVLPVCLSAGELEDEWAGEPGRRLRERYAFAARHTESTGEATCLVISDLDAGVGVFANT 60
Query: 158 QMTVNNQIVVGTLMNLSDNPTRVSIGQDW---RESDITNRIPIIFTGNDFSTIYAPLIRD 214
TVN Q + G+LM L D+P VS GQ+W R + R+PI T ND + +YAPL+R+
Sbjct: 61 ANTVNTQNLQGSLMALCDDPLLVSAGQEWAAVRRRAL--RVPIYVTANDLTCLYAPLVRE 118
Query: 215 GRMEKFYWQPNLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSI 274
GRM+KFY++P+ ++ + ++ + +V ++ FP Q +DF+G++++R D ++
Sbjct: 119 GRMDKFYFEPSRGEMAAALRALFAPQ-LGAADVKVLLDAFPEQPMDFFGSIKARLVDGAV 177
Query: 275 SKWIDDIGGVENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSK 334
+W+ GG + L L++R PE ++ A L +G L EQQ +++T+LS
Sbjct: 178 RRWLHQAGGAQGLSAALVERDG-----AAMEPEVSLAAALAAGEELAAEQQAVLDTRLSL 232
Query: 335 EYMKNID 341
+YMK ++
Sbjct: 233 QYMKGLE 239
>gi|305855755|gb|ADM67718.1| putative rubisco activase [Rhododendron rubropunctatum]
gi|305855757|gb|ADM67719.1| putative rubisco activase [Rhododendron morii]
gi|305855759|gb|ADM67720.1| putative rubisco activase [Rhododendron pseudochrysanthum]
Length = 171
Score = 186 bits (472), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 91/146 (62%), Positives = 112/146 (76%), Gaps = 3/146 (2%)
Query: 46 YYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIM 105
+YIAP FM L+ HI KN++ L N+KVPLILGIWGGKGQGKSFQ EL+F MGI P++M
Sbjct: 26 FYIAPAFMDKLMVHISKNFMT-LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 84
Query: 106 SAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRF-GNTQMTVNNQ 164
SAGELES AGEP KLIR+RYR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ
Sbjct: 85 SAGELESGNAGEPAKLIRQRYREAADIIR-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQ 143
Query: 165 IVVGTLMNLSDNPTRVSIGQDWRESD 190
+V TLMN++DNPT V + + + D
Sbjct: 144 MVNATLMNIADNPTSVQLPGMYNKED 169
>gi|305855753|gb|ADM67717.1| putative rubisco activase [Rhododendron hyperythrum]
Length = 171
Score = 186 bits (472), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 91/146 (62%), Positives = 112/146 (76%), Gaps = 3/146 (2%)
Query: 46 YYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIM 105
+YIAP FM L+ HI KN++ L N+KVPLILGIWGGKGQGKSFQ EL+F MGI P++M
Sbjct: 26 FYIAPAFMDKLMVHISKNFMT-LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 84
Query: 106 SAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRF-GNTQMTVNNQ 164
SAGELES AGEP KLIR+RYR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ
Sbjct: 85 SAGELESGNAGEPAKLIRQRYREAADIIR-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQ 143
Query: 165 IVVGTLMNLSDNPTRVSIGQDWRESD 190
+V TLMN++DNPT V + + + D
Sbjct: 144 MVNATLMNIADNPTSVQLPGMYNKED 169
>gi|305855749|gb|ADM67715.1| putative rubisco activase [Rhododendron kawakamii]
Length = 171
Score = 186 bits (472), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 91/146 (62%), Positives = 112/146 (76%), Gaps = 3/146 (2%)
Query: 46 YYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIM 105
+YIAP FM L+ HI KN++ L N+KVPLILGIWGGKGQGKSFQ EL+F MGI P++M
Sbjct: 26 FYIAPAFMDKLIVHISKNFMT-LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 84
Query: 106 SAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRF-GNTQMTVNNQ 164
SAGELES AGEP KLIR+RYR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ
Sbjct: 85 SAGELESGNAGEPAKLIRQRYREAADIIR-KGKMCCLFINDLDAGAGRMGGTTQFTVNNQ 143
Query: 165 IVVGTLMNLSDNPTRVSIGQDWRESD 190
+V TLMN++DNPT V + + + D
Sbjct: 144 MVNATLMNIADNPTCVQLPGRYNKED 169
>gi|338807894|gb|AEJ07671.1| putative rubisco activase [Rhododendron wiltonii]
Length = 171
Score = 186 bits (472), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 91/146 (62%), Positives = 112/146 (76%), Gaps = 3/146 (2%)
Query: 46 YYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIM 105
+YIAP FM L+ HI KN++ L N+KVPLILGIWGGKGQGKSFQ EL+F MGI P++M
Sbjct: 26 FYIAPAFMDKLMVHISKNFMT-LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 84
Query: 106 SAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRF-GNTQMTVNNQ 164
SAGELES AGEP KLIR+RYR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ
Sbjct: 85 SAGELESGNAGEPAKLIRQRYREAADIIR-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQ 143
Query: 165 IVVGTLMNLSDNPTRVSIGQDWRESD 190
+V TLMN++DNPT V + + + D
Sbjct: 144 MVNATLMNIADNPTSVQLPGMYNKED 169
>gi|305855727|gb|ADM67704.1| putative rubisco activase [Pieris japonica var. taiwanensis]
Length = 171
Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 91/146 (62%), Positives = 112/146 (76%), Gaps = 3/146 (2%)
Query: 46 YYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIM 105
+YIAP FM L+ HI KN++ L N+KVPLILGIWGGKGQGKSFQ EL+F MGI P++M
Sbjct: 26 FYIAPAFMDKLIVHISKNFMT-LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 84
Query: 106 SAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRF-GNTQMTVNNQ 164
SAGELES AGEP KLIR+RYR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ
Sbjct: 85 SAGELESGNAGEPAKLIRQRYREAADIIR-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQ 143
Query: 165 IVVGTLMNLSDNPTRVSIGQDWRESD 190
+V TLMN++DNPT V + + + D
Sbjct: 144 MVNATLMNIADNPTSVQLPGMYNKED 169
>gi|338807890|gb|AEJ07669.1| putative rubisco activase [Rhododendron chihsinianum]
Length = 171
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 91/146 (62%), Positives = 112/146 (76%), Gaps = 3/146 (2%)
Query: 46 YYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIM 105
+YIAP FM L+ HI KN++ L N+KVPLILGIWGGKGQGKSFQ EL+F MGI P++M
Sbjct: 26 FYIAPAFMDKLMVHISKNFMT-LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 84
Query: 106 SAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRF-GNTQMTVNNQ 164
SAGELES AGEP KLIR+RYR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ
Sbjct: 85 SAGELESGNAGEPAKLIRQRYREAADIIR-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQ 143
Query: 165 IVVGTLMNLSDNPTRVSIGQDWRESD 190
+V TLMN++DNPT V + + + D
Sbjct: 144 MVNATLMNIADNPTCVQLPGMYNKED 169
>gi|305855751|gb|ADM67716.1| putative rubisco activase [Rhododendron formosanum]
Length = 171
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 92/147 (62%), Positives = 114/147 (77%), Gaps = 4/147 (2%)
Query: 46 YYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIM 105
+YIAP FM L+ HI KN++ L N+KVPLILGIWGGKGQGKSFQ EL+F MGI P++M
Sbjct: 26 FYIAPAFMDKLMVHISKNFMT-LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 84
Query: 106 SAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRF-GNTQMTVNNQ 164
SAGELES AGEP KLIR+RYR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ
Sbjct: 85 SAGELESGNAGEPAKLIRQRYREAADIIR-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQ 143
Query: 165 IVVGTLMNLSDNPTRVSI-GQDWRESD 190
+V TLMN++DNPT V + G + +E +
Sbjct: 144 MVNATLMNIADNPTSVQLPGMNNKEDN 170
>gi|305855747|gb|ADM67714.1| putative rubisco activase [Rhododendron breviperulatum]
Length = 171
Score = 185 bits (470), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 91/146 (62%), Positives = 112/146 (76%), Gaps = 3/146 (2%)
Query: 46 YYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIM 105
+YIAP FM L+ HI KN++ L N+KVPLILGIWGGKGQGKSFQ EL+F MGI P++M
Sbjct: 26 FYIAPAFMDKLIVHISKNFMT-LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 84
Query: 106 SAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRF-GNTQMTVNNQ 164
SAGELES AGEP KLIR+RYR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ
Sbjct: 85 SAGELESGNAGEPAKLIRQRYREAADIIR-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQ 143
Query: 165 IVVGTLMNLSDNPTRVSIGQDWRESD 190
+V TLMN++DNPT V + + + D
Sbjct: 144 MVNATLMNIADNPTCVQLPCMYNKED 169
>gi|305855731|gb|ADM67706.1| putative rubisco activase [Rhododendron ellipticum]
gi|305855735|gb|ADM67708.1| putative rubisco activase [Rhododendron nakaharae]
gi|305855737|gb|ADM67709.1| putative rubisco activase [Rhododendron noriakianum]
gi|305855739|gb|ADM67710.1| putative rubisco activase [Rhododendron kanehirai]
gi|305855741|gb|ADM67711.1| putative rubisco activase [Rhododendron simsii]
gi|305855743|gb|ADM67712.1| putative rubisco activase [Rhododendron oldhamii]
gi|305855745|gb|ADM67713.1| putative rubisco activase [Rhododendron rubropilosum]
gi|338807888|gb|AEJ07668.1| putative rubisco activase [Rhododendron simsii]
gi|338807892|gb|AEJ07670.1| putative rubisco activase [Rhododendron seniavinii]
gi|338807896|gb|AEJ07672.1| putative rubisco activase [Rhododendron simsii]
gi|338807898|gb|AEJ07673.1| putative rubisco activase [Rhododendron scabrum]
Length = 171
Score = 185 bits (470), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 91/146 (62%), Positives = 112/146 (76%), Gaps = 3/146 (2%)
Query: 46 YYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIM 105
+YIAP FM L+ HI KN++ L N+KVPLILGIWGGKGQGKSFQ EL+F MGI P++M
Sbjct: 26 FYIAPAFMDKLIVHISKNFMT-LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 84
Query: 106 SAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRF-GNTQMTVNNQ 164
SAGELES AGEP KLIR+RYR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ
Sbjct: 85 SAGELESGNAGEPAKLIRQRYREAADIIR-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQ 143
Query: 165 IVVGTLMNLSDNPTRVSIGQDWRESD 190
+V TLMN++DNPT V + + + D
Sbjct: 144 MVNATLMNIADNPTCVQLPGMYNKED 169
>gi|305855733|gb|ADM67707.1| putative rubisco activase [Rhododendron mariesii]
Length = 171
Score = 184 bits (467), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 90/138 (65%), Positives = 109/138 (78%), Gaps = 3/138 (2%)
Query: 46 YYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIM 105
+YIAP FM L+ HI KN++ L N+KVPLILGIWGGKGQGKSFQ EL+F MGI P++M
Sbjct: 26 FYIAPAFMDKLIVHISKNFMT-LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 84
Query: 106 SAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRF-GNTQMTVNNQ 164
SAGELES AGEP KLIR+RYR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ
Sbjct: 85 SAGELESGNAGEPAKLIRQRYREAADIIR-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQ 143
Query: 165 IVVGTLMNLSDNPTRVSI 182
+V TLMN++DNPT V +
Sbjct: 144 MVNATLMNIADNPTCVQL 161
>gi|305855729|gb|ADM67705.1| putative rubisco activase [Rhododendron ovatum]
Length = 171
Score = 181 bits (460), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 88/138 (63%), Positives = 109/138 (78%), Gaps = 3/138 (2%)
Query: 46 YYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIM 105
+YIAP FM L+ HI KN++ L N+KVPLILGIWGGKGQGKSFQ EL+F MGI P++M
Sbjct: 26 FYIAPAFMDKLMVHISKNFMT-LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 84
Query: 106 SAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRF-GNTQMTVNNQ 164
SAGELES +AGEP KLIR+RYR A+ +++ +GKM CL IND++AG GR G TQ TVNNQ
Sbjct: 85 SAGELESGKAGEPAKLIRQRYREAADIIR-KGKMCCLFINDLEAGAGRMGGTTQYTVNNQ 143
Query: 165 IVVGTLMNLSDNPTRVSI 182
+V TLMN++ NPT V +
Sbjct: 144 MVNATLMNIAHNPTCVQL 161
>gi|159885646|dbj|BAF93200.1| RuBisCO activase [Hordeum vulgare]
Length = 158
Score = 180 bits (457), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 86/158 (54%), Positives = 115/158 (72%), Gaps = 3/158 (1%)
Query: 91 TELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAG 150
EL+F MGI P++MSAGELES AGEP KLIR+RYR A+ +++ +GKM CL IND+DAG
Sbjct: 1 CELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADMIK-KGKMCCLFINDLDAG 59
Query: 151 LGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYA 209
GR G TQ TVNNQ+V TLMN++D PT V + + + + R+PI+ TGNDFST+YA
Sbjct: 60 AGRMGGTTQYTVNNQMVNATLMNIADAPTNVQLPGMYNKEE-NPRVPIVVTGNDFSTLYA 118
Query: 210 PLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITKDEV 247
PLIRDGRMEKFYW P +D + + +++ D ++ + V
Sbjct: 119 PLIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVSDESV 156
>gi|307102907|gb|EFN51173.1| hypothetical protein CHLNCDRAFT_141315 [Chlorella variabilis]
Length = 295
Score = 177 bits (448), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 98/253 (38%), Positives = 147/253 (58%), Gaps = 36/253 (14%)
Query: 86 GKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMIN 145
GK+FQ L ++ +GI P++MSAGELES AGEP KLIR+RYR AS V++ +G+M L IN
Sbjct: 50 GKTFQCNLAYKKLGIAPIVMSAGELESGNAGEPAKLIRQRYREASDVIK-KGRMCSLFIN 108
Query: 146 DIDAGLGRFGN-TQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDF 204
D+DAG GR G+ TQ TVNNQ+V TLMN++DNPT V + ++ +I R+PI
Sbjct: 109 DLDAGAGRMGDATQYTVNNQMVNATLMNIADNPTNVQLPGVYKNEEIP-RVPI------- 160
Query: 205 STIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGA 264
D + + +++ D + + +V +V FP Q++DF+GA
Sbjct: 161 -----------------------DRIGVCMGIFQHDNVDRADVEKLVDAFPGQSIDFFGA 197
Query: 265 LRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQ 324
+R+R YD + WI GVEN+G +L+ ++ K F P + L++ G L+ EQ
Sbjct: 198 IRARVYDDKVHDWIMGT-GVENIGKRLINSKEGK--VTFDKPSMDLGTLMKYGNLLVEEQ 254
Query: 325 QLIMETKLSKEYM 337
+ + +L+ EYM
Sbjct: 255 ENVKRVQLADEYM 267
>gi|19988|emb|CAA78702.1| ribulose bisphosphate carboxylase activase [Nicotiana tabacum]
Length = 206
Score = 174 bits (441), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 86/184 (46%), Positives = 121/184 (65%), Gaps = 4/184 (2%)
Query: 155 GNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRD 214
G TQ TVNNQ+V TLMN++DNPT V + + + + R+PII TGNDFST+YAPLIRD
Sbjct: 7 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQE-NARVPIIVTGNDFSTLYAPLIRD 65
Query: 215 GRMEKFYWQPNLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSI 274
GRMEKFYW P ED + + ++ D + ++V IV FP Q++DF+GALR+R YD +
Sbjct: 66 GRMEKFYWAPTREDRIGVCTGIFRTDNVPAEDVVKIVDNFPGQSIDFFGALRARVYDDEV 125
Query: 275 SKWIDDIGGVENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSK 334
KW+ G+E +G+KLL P F P+ T+E LLE G L++EQ+ + +L+
Sbjct: 126 RKWVSGT-GIEKIGDKLLNSFDGP--PTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLAD 182
Query: 335 EYMK 338
+Y+K
Sbjct: 183 KYLK 186
>gi|13569643|gb|AAK31173.1| ribulose-1,5-bisphosphate carboxylase activase [Oryza sativa Indica
Group]
Length = 193
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 78/172 (45%), Positives = 117/172 (68%), Gaps = 4/172 (2%)
Query: 166 VVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPN 225
V TLMN++DNPT V + + + D R+PII TGNDFST+YAPLIRDGRMEKFYW P
Sbjct: 1 VNATLMNIADNPTNVQLPGMYNKED-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT 59
Query: 226 LEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVE 285
+D + + ++ D + +++ IV +FP Q++DF+GALR+R YD + KW+ D GVE
Sbjct: 60 RDDRVGVCKGIFRTDNVPDEDIVKIVDSFPGQSIDFFGALRARVYDDEVRKWVSDT-GVE 118
Query: 286 NLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYM 337
N+G +L+ R+ P F P+ T+E L+E GY L++EQ+ + +L+++Y+
Sbjct: 119 NIGKRLVNSREGP--PEFEQPKMTIEKLIEYGYMLVKEQENVKRVQLAEQYL 168
>gi|388505442|gb|AFK40787.1| unknown [Lotus japonicus]
Length = 187
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 78/173 (45%), Positives = 118/173 (68%), Gaps = 4/173 (2%)
Query: 165 IVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQP 224
+V TLMN++DNPT V + + + D R+PI+ TGND ST+YAPLIRDGRMEKFYW P
Sbjct: 1 MVNATLMNIADNPTNVQLPGMYNKED-NPRVPIVVTGNDSSTLYAPLIRDGRMEKFYWAP 59
Query: 225 NLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGV 284
ED + + +++ D ++++ V +IV TFP Q++DF+GALR+R YD + KWI + GV
Sbjct: 60 TREDRIGVCKGIFQTDNVSEEAVVTIVDTFPGQSIDFFGALRARVYDDEVRKWISGV-GV 118
Query: 285 ENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYM 337
+ +G KL+ ++ PVF P+ T+E LLE G L++EQ+ + +L+ +Y+
Sbjct: 119 DLIGKKLVNSKEGP--PVFEQPKMTLEKLLEYGNMLVQEQENVERVQLADKYL 169
>gi|156106226|gb|ABU49419.1| rubisco activase [Camellia sinensis]
Length = 139
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 79/136 (58%), Positives = 98/136 (72%), Gaps = 3/136 (2%)
Query: 106 SAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQ 164
GELES AGEP KLIR+RYR AS +++ +GKM CL IND+DAG GR G TQ TVNNQ
Sbjct: 2 CPGELESGNAGEPAKLIRQRYREASDIIR-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQ 60
Query: 165 IVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQP 224
+V TLMN++DNPT V + + + D R+PII TGNDFST+YAPLIRDGRMEK +W P
Sbjct: 61 MVNATLMNIADNPTSVQLPGMYNKED-NARVPIIVTGNDFSTLYAPLIRDGRMEKLHWAP 119
Query: 225 NLEDILNIVHRMYEKD 240
N ED + + ++ D
Sbjct: 120 NREDRIGVCMGIFRTD 135
>gi|37783283|gb|AAP72270.1| ribulose-1,5-bisphosphate carboxylase activase [Triticum aestivum]
Length = 201
Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 70/145 (48%), Positives = 99/145 (68%), Gaps = 5/145 (3%)
Query: 194 RIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITKDEVGSIVKT 253
R+PI+ TGNDFST+YAPLIRDGRMEKFYW P +D + + +++ D ++ + V IV T
Sbjct: 4 RVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVSDESVVKIVDT 63
Query: 254 FPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPV-FTPPEKTVEA 312
FP Q++DF+GALR+R YD + KW+ G+EN+G KL+ R + PV F P+ TVE
Sbjct: 64 FPGQSIDFFGALRARVYDDEVRKWVTST-GIENIGKKLVNSR---DGPVTFEQPKMTVEK 119
Query: 313 LLESGYSLLREQQLIMETKLSKEYM 337
LLE G+ L++EQ + +L+ YM
Sbjct: 120 LLEYGHMLVQEQDNVKRVQLADTYM 144
>gi|168812226|gb|ACA30289.1| putative ribulose-1,5-bisphosphate carboxylase/oxygenase activase
alpha 2 [Cupressus sempervirens]
Length = 145
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 66/140 (47%), Positives = 93/140 (66%), Gaps = 3/140 (2%)
Query: 194 RIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITKDEVGSIVKT 253
R+PI+ TGNDFST+YAPLIRDGRMEKFYW P +D + + ++ D I+ + IV +
Sbjct: 7 RVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFRTDNISDAAIVKIVDS 66
Query: 254 FPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVFTPPEKTVEAL 313
FP Q+++F+GALR+R YD + KWI ++ GVE +G KL+ R P F P TVE L
Sbjct: 67 FPGQSINFFGALRARVYDDEVRKWIGEV-GVEGIGKKLVNSRDGP--PTFEKPAMTVEKL 123
Query: 314 LESGYSLLREQQLIMETKLS 333
LE G L++EQ+ + +L+
Sbjct: 124 LEYGNMLVKEQENVKRVQLA 143
>gi|308810312|ref|XP_003082465.1| 26S proteasome regulatory complex, ATPase RPT4 (ISS) [Ostreococcus
tauri]
gi|116060933|emb|CAL57411.1| 26S proteasome regulatory complex, ATPase RPT4 (ISS) [Ostreococcus
tauri]
Length = 555
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 74/195 (37%), Positives = 108/195 (55%), Gaps = 32/195 (16%)
Query: 171 MNLSDNPTRVSIGQDWRESD----ITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNL 226
MNL D+P VS+G+D R D +T R+PII T ND ST+YAPL+RDGRM+K+YW P
Sbjct: 1 MNLCDHPELVSVGED-RGDDGRNMVTARVPIIVTANDLSTVYAPLLRDGRMDKWYWSPTR 59
Query: 227 EDILNIVHRMY-EKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWID------ 279
+DI +IVH ++ +++ T + +V FP Q LDF+GA R++ YD +I W+
Sbjct: 60 DDICDIVHALFKDEEKWTYEATARLVDEFPGQPLDFFGAARAKVYDDAIHHWMCVDARER 119
Query: 280 --------DIGGVENL-GNKLLKRRKDKELPVFTPPEKTV-------EALLESGYSLLRE 323
+GG +L GN D L + P + V E++ + L R+
Sbjct: 120 CSLLMRKMSVGGDTDLFGNS----GADSSLWRYHTPNEVVRGASITPESVFTAAKELARQ 175
Query: 324 QQLIMETKLSKEYMK 338
Q +M TKLS EY++
Sbjct: 176 QDFMMATKLSTEYLR 190
>gi|338746118|emb|CCC15108.1| rubisco activase [Lepidodinium chlorophorum]
Length = 252
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 68/141 (48%), Positives = 91/141 (64%), Gaps = 7/141 (4%)
Query: 11 VIDPLFAGN-FLGKDSDIVF----DYRQKVTRSFEYLQGDYYIAPVFMASLLCHIVKNYI 65
++D LF G LG + V + QK + +Q YIAP F+ + HI KN++
Sbjct: 114 MVDSLFQGQQGLGGTHNAVMSSGPNVHQKNFGDSDVMQDGLYIAPDFLDKMTVHIAKNFL 173
Query: 66 AHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRER 125
L VKVPLILGIWGGKGQGK+FQTEL ++ +GI P++MSAGELES AGEP KL+R
Sbjct: 174 -ELPLVKVPLILGIWGGKGQGKTFQTELGYRKLGINPIVMSAGELESGNAGEPAKLVRAG 232
Query: 126 YRTASQVVQNQGKMSCLMIND 146
+ AS+ ++ +GKM L IN+
Sbjct: 233 NKEASEFIK-KGKMCFLFINE 252
>gi|125535371|gb|EAY81919.1| hypothetical protein OsI_37097 [Oryza sativa Indica Group]
Length = 360
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 72/184 (39%), Positives = 94/184 (51%), Gaps = 28/184 (15%)
Query: 59 HIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEP 118
HI KN + K+P I QGKSFQ EL+F MGI ++MSAGELES AGEP
Sbjct: 117 HISKNLM------KLPNI--------QGKSFQCELVFAKMGINLIMMSAGELESGNAGEP 162
Query: 119 GKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPT 178
KLIR+RYR A+ ++ N+GKM L IND+DAG V+ + G +
Sbjct: 163 AKLIRQRYREAADMI-NKGKMCLLFINDLDAG------RHDAVHGEQPDG---ERDADEH 212
Query: 179 RVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYE 238
R Q D+ P + PLIRDGRM+KFYW P ED + + ++
Sbjct: 213 RGQPHQRAAPRDVQPPCPH----HRHRQRLLPLIRDGRMDKFYWAPTREDRIGVCRGIFR 268
Query: 239 KDGI 242
D +
Sbjct: 269 SDKV 272
>gi|326525631|dbj|BAJ88862.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 74
Score = 97.1 bits (240), Expect = 1e-17, Method: Composition-based stats.
Identities = 42/53 (79%), Positives = 47/53 (88%)
Query: 1 MNIAVGARAGVIDPLFAGNFLGKDSDIVFDYRQKVTRSFEYLQGDYYIAPVFM 53
MNIAVGAR+G++D LF G FLG+DSDIVFDYRQK TR FEYLQGDYYIAP F+
Sbjct: 16 MNIAVGARSGIVDDLFVGKFLGRDSDIVFDYRQKATRKFEYLQGDYYIAPAFL 68
>gi|187470377|gb|ACD11149.1| ribulose bisphosphate carboxylase activase [Lemna minor]
Length = 68
Score = 96.7 bits (239), Expect = 1e-17, Method: Composition-based stats.
Identities = 45/69 (65%), Positives = 54/69 (78%), Gaps = 1/69 (1%)
Query: 85 QGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMI 144
QGKSFQ EL+F MGI P++MSAGELES AGEP KLIR+RYR A+ ++ +GKM L I
Sbjct: 1 QGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIA-KGKMCALFI 59
Query: 145 NDIDAGLGR 153
ND+DAG GR
Sbjct: 60 NDLDAGAGR 68
>gi|5903101|gb|AAD55659.1|AC008017_32 Unknown protein [Arabidopsis thaliana]
Length = 150
Score = 94.0 bits (232), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 42/53 (79%), Positives = 49/53 (92%)
Query: 1 MNIAVGARAGVIDPLFAGNFLGKDSDIVFDYRQKVTRSFEYLQGDYYIAPVFM 53
+NIAVGAR+G+ID +F G+FLGKDSDIVFDYRQK TRSFE+LQGDYYIAP F+
Sbjct: 91 VNIAVGARSGMIDDVFIGDFLGKDSDIVFDYRQKATRSFEHLQGDYYIAPSFL 143
>gi|134035003|sp|P85086.1|RCA_ARAHY RecName: Full=Ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic; Short=RA; Short=RuBisCO activase
Length = 140
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 67/197 (34%), Positives = 79/197 (40%), Gaps = 100/197 (50%)
Query: 70 NVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTA 129
++VPLILGIWGGK MGI P++MSAGELES AGEP
Sbjct: 44 GLRVPLILGIWGGK--------------MGINPIMMSAGELESGNAGEP----------- 78
Query: 130 SQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRES 189
KM CL IND+DAG G
Sbjct: 79 -------AKMCCLFINDLDAGAG------------------------------------- 94
Query: 190 DITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITKDEVGS 249
R+PII TGNDFST+YAPLIR G +
Sbjct: 95 ----RVPIIVTGNDFSTLYAPLIRIGVCTGIF---------------------------R 123
Query: 250 IVKTFPNQALDFYGALR 266
+V TFP Q++DF+GALR
Sbjct: 124 LVDTFPGQSIDFFGALR 140
>gi|133711850|gb|ABO36654.1| RuBisCO activase [Cucumis sativus]
Length = 111
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 64/109 (58%), Gaps = 3/109 (2%)
Query: 224 PNLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGG 283
P ED + I ++ DG+ +++ +V TFP Q++DF+GALR+R YD + KW + G
Sbjct: 2 PTREDRIGICTGIFRTDGVPFEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWAVGV-G 60
Query: 284 VENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKL 332
VE +G L+ ++ P F P+ T+E LLE G L+ EQ+ + KL
Sbjct: 61 VERIGRNLVNSKESP--PTFDQPKMTIEKLLEYGNMLVMEQENVKRVKL 107
>gi|111162643|gb|ABH07508.1| RuBisCO activase, partial [Nicotiana attenuata]
Length = 100
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/99 (40%), Positives = 61/99 (61%), Gaps = 3/99 (3%)
Query: 240 DGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKE 299
D + ++ V IV TFP Q++DF+GALR+R YD + KW+ G+E +G+KLL
Sbjct: 3 DNVPEEAVIKIVDTFPGQSIDFFGALRARVYDDEVRKWVSGT-GIEAIGDKLLNSFDGP- 60
Query: 300 LPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYMK 338
P F P+ TVE LL G L++EQ+ + +L++ Y+K
Sbjct: 61 -PTFEQPKMTVEKLLGYGNMLVQEQENVKRVQLAETYLK 98
>gi|345111061|pdb|3THG|A Chain A, Crystal Structure Of The Creosote Rubisco Activase
C-Domain
Length = 107
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 62/99 (62%), Gaps = 3/99 (3%)
Query: 227 EDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVEN 286
ED + + ++ D + D++ +V TFP Q++DF+GALR+R YD + KW+ ++ GV+
Sbjct: 8 EDRIGVCKGIFRTDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWVSEV-GVDT 66
Query: 287 LGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQ 325
+G KL+ ++ P F P+ T++ LL G L++EQ+
Sbjct: 67 IGKKLVNSKEGP--PSFEQPKMTIDKLLGYGGMLVQEQE 103
>gi|115486825|ref|NP_001068556.1| Os11g0707100 [Oryza sativa Japonica Group]
gi|62733170|gb|AAX95287.1| Similar to ribulose bisphosphate carboxylase/oxygenase activase b,
chloroplastprecursor (rubisco activase b) (ra b) [Oryza
sativa Japonica Group]
gi|62733298|gb|AAX95415.1| ribulose bisphosphate carboxylase/oxygenase activase b,
chloroplastprecursor (rubisco activase b) (ra b)-related
[Oryza sativa Japonica Group]
gi|77552727|gb|ABA95524.1| expressed protein [Oryza sativa Japonica Group]
gi|113645778|dbj|BAF28919.1| Os11g0707100 [Oryza sativa Japonica Group]
gi|125578109|gb|EAZ19331.1| hypothetical protein OsJ_34881 [Oryza sativa Japonica Group]
Length = 366
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/92 (46%), Positives = 55/92 (59%), Gaps = 23/92 (25%)
Query: 59 HIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEP 118
HI KN + K+P I QGKSFQ +L+F MGI ++MS AGEP
Sbjct: 117 HISKNLM------KLPNI--------QGKSFQCDLVFAKMGINLIMMS--------AGEP 154
Query: 119 GKLIRERYRTASQVVQNQGKMSCLMINDIDAG 150
KLIR+RYR A+ ++ N+GKM L IND+DAG
Sbjct: 155 AKLIRQRYREAADMI-NKGKMCVLFINDLDAG 185
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 25/33 (75%), Gaps = 1/33 (3%)
Query: 259 LDFYGALRSRTYDRSISKWIDDIGGVENLGNKL 291
+DF+GALR+R Y + +W+ +I GVEN+G +L
Sbjct: 269 IDFFGALRARVYGDEVRRWVAEI-GVENIGRRL 300
>gi|169635155|gb|ACA58354.1| rubisco activase 2 [Arachis diogoi]
Length = 160
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 63/102 (61%), Gaps = 3/102 (2%)
Query: 236 MYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRR 295
++ D + +++ +V TFP Q++DF+GALR+R YD + KW+ GV+ +G KL+ +
Sbjct: 5 IFRTDNVPPEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWV-SGVGVDGVGKKLVNSK 63
Query: 296 KDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYM 337
+ P F P+ T+ LLE G L++EQ+ + +L+ +Y+
Sbjct: 64 EGP--PTFEQPKMTLAKLLEYGNMLVQEQENVKRVQLADKYL 103
>gi|168415082|gb|ACA23474.1| rubisco activase [Arachis diogoi]
Length = 94
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 264 ALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLRE 323
ALR+R YD + KWI +G VE +G KL+ ++ P F P+ T+E LLE G L++E
Sbjct: 1 ALRARVYDDEVRKWISGVG-VEGVGKKLVNSKEGP--PTFEQPKMTLEKLLEYGNMLVQE 57
Query: 324 QQLIMETKLSKEYM 337
Q+ + +L+ +Y+
Sbjct: 58 QENVKRVQLADKYL 71
>gi|145566934|sp|P85111.1|RCA_VITSX RecName: Full=Ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic; Short=RA; Short=RuBisCO activase
Length = 62
Score = 55.8 bits (133), Expect = 3e-05, Method: Composition-based stats.
Identities = 29/58 (50%), Positives = 32/58 (55%), Gaps = 18/58 (31%)
Query: 98 MGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG 155
MGI P++MSAGELES AGEP KM CL IND+DAG GR G
Sbjct: 16 MGINPIMMSAGELESGNAGEP------------------AKMCCLFINDLDAGAGRIG 55
>gi|356494967|ref|XP_003516352.1| PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic-like [Glycine max]
Length = 118
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 48/78 (61%), Gaps = 3/78 (3%)
Query: 261 FYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSL 320
F+GAL++R YD + KWI + GV+ +G KL+ ++ P F P+ T+ LLE G L
Sbjct: 18 FFGALKARVYDDEVRKWI-SVVGVDFIGKKLVNSKEGP--PNFDQPKMTLSKLLEYGNML 74
Query: 321 LREQQLIMETKLSKEYMK 338
++EQ+ + +L+ Y+K
Sbjct: 75 VQEQENVERVQLADMYLK 92
>gi|356502624|ref|XP_003520118.1| PREDICTED: cell division control protein 48 homolog B-like [Glycine
max]
Length = 606
Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 83/182 (45%), Gaps = 21/182 (11%)
Query: 63 NYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLI 122
++ A L +K P L ++G G GK+ + + G ++S + AGE +++
Sbjct: 37 SHQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHRAHAGESERIL 96
Query: 123 RERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQ---MTVNNQIVVGTLMNLSDNPTR 179
RE + AS V GK S + I++IDA R + + + V +Q+ TLM+ S+ PT
Sbjct: 97 REAFSEASSHVA-LGKPSVIFIDEIDALCARRDSKREQDVRVASQLF--TLMD-SNKPTF 152
Query: 180 VSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRM--EKFYWQPNLEDILNIVHRMY 237
+ G + ++ + N I L R GR E PN +D I+ ++Y
Sbjct: 153 STPG-----------VVVVASTNRVDAIDPALRRSGRFDAEIEVTVPNEDDRFQIL-KLY 200
Query: 238 EK 239
K
Sbjct: 201 TK 202
>gi|192361342|ref|YP_001983115.1| putative ATPase [Cellvibrio japonicus Ueda107]
gi|190687507|gb|ACE85185.1| probable ATPase [Cellvibrio japonicus Ueda107]
Length = 507
Score = 45.8 bits (107), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 71/148 (47%), Gaps = 24/148 (16%)
Query: 75 LILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQ 134
L+LG+ GG GKS + + G+ + M G L ++ GE + +RE + A +
Sbjct: 285 LLLGVQGG---GKSLAAKAVAGLWGLPLMRMDVGSLYNKYHGETERNLREALKLADAM-- 339
Query: 135 NQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNR 194
L +++I+ G+ + GN +Q ++GTL+ W ++ T R
Sbjct: 340 ---SPCVLWLDEIEKGMAQDGNDGGV--SQRLLGTLLT-------------WM-AERTTR 380
Query: 195 IPIIFTGNDFSTIYAPLIRDGRMEKFYW 222
+ I+ T ND S + LIR GR+++ ++
Sbjct: 381 VFIVATSNDISRLPPELIRKGRLDEIFF 408
>gi|296413658|ref|XP_002836526.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295630353|emb|CAZ80717.1| unnamed protein product [Tuber melanosporum]
Length = 703
Score = 45.4 bits (106), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 60/125 (48%), Gaps = 10/125 (8%)
Query: 52 FMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELE 111
F+A L H N V+ P + + G G GK+ I + +G+ + +SA +
Sbjct: 173 FIAMPLAHPEVNLHT---GVQPPCGVLLHGPPGCGKTMLANAIAREVGLPFIAISAPSIV 229
Query: 112 SERAGEPGKLIRERYRTASQVVQNQGKMSCLM-INDIDAGLGRFGNTQMTVNNQIVVGTL 170
S +GEP K++RE + A +G CLM +++IDA + NTQ + +IV L
Sbjct: 230 SGVSGEPEKMLRELFEEA------RGIAPCLMFMDEIDAITQKRDNTQRDMERRIVAQML 283
Query: 171 MNLSD 175
+ D
Sbjct: 284 TCMDD 288
>gi|308798689|ref|XP_003074124.1| Nuclear AAA ATPase (VCP subfamily) (ISS) [Ostreococcus tauri]
gi|116000296|emb|CAL49976.1| Nuclear AAA ATPase (VCP subfamily) (ISS) [Ostreococcus tauri]
Length = 723
Score = 44.7 bits (104), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 75/172 (43%), Gaps = 19/172 (11%)
Query: 66 AHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRER 125
A L VK P L + G G GK+ + G E + +S+G++ AGE K +R+
Sbjct: 233 ARKLGVKFPRGLLLHGPPGTGKTEAVRAVSAEAGAETLTVSSGDVAGAYAGESEKRLRKV 292
Query: 126 YRTASQVVQNQGKMSCLMINDIDAGLG--RFGNTQMTVNNQIVVGTLMNLSDNPTRVSIG 183
+ A ++V+ +G ++I+++DA R GN + VV L+ L D S
Sbjct: 293 FERARKLVK-KGSPCVIVIDELDAMCPTRRDGN----AHEARVVAQLLTLMDGAGESS-- 345
Query: 184 QDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQ--PNLEDILNIV 233
+P++ T + + I L R GR ++ PNL IV
Sbjct: 346 --------EVHVPVVATTSRPNAIDPALRRPGRFDREIEMSLPNLHARAEIV 389
>gi|170592277|ref|XP_001900895.1| ATPase, AAA family protein [Brugia malayi]
gi|158591590|gb|EDP30195.1| ATPase, AAA family protein [Brugia malayi]
Length = 739
Score = 44.3 bits (103), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 77/177 (43%), Gaps = 15/177 (8%)
Query: 53 MASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELES 112
+ S + H+ I LL V P + G G GK+ + + + + ++ EL S
Sbjct: 155 VCSFVIHLFHPEIDDLLGVTHPTGFLLHGPPGCGKTLFAQAVAGQFNLPILKVAVTELVS 214
Query: 113 ERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIV---VGT 169
+GE + IR + A + L+++DIDA + N Q + +IV +
Sbjct: 215 GVSGESEQKIRLLFTKAI-----EASPCILLLDDIDAIASKRDNAQREMERRIVSQLIAC 269
Query: 170 LMNLSDNPTRVSIGQDWRESDIT-------NRIPIIFTGNDFSTIYAPLIRDGRMEK 219
L +LS+ V + + + DI+ NR+ +I T + TI L R GR +K
Sbjct: 270 LDDLSNPRKDVELNTNSIDIDISVRKMHKGNRVLVIGTTSRVETIDPALRRAGRFDK 326
>gi|388258720|ref|ZP_10135895.1| putative ATPase [Cellvibrio sp. BR]
gi|387937479|gb|EIK44035.1| putative ATPase [Cellvibrio sp. BR]
Length = 493
Score = 44.3 bits (103), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 71/148 (47%), Gaps = 24/148 (16%)
Query: 75 LILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQ 134
L+LG+ GG GKS + + G+ + M G L ++ GE + +RE + A +
Sbjct: 271 LLLGVQGG---GKSLAAKAVAGLWGLPLMRMDVGALYNKFHGETERNLREALKLADAM-- 325
Query: 135 NQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNR 194
L +++I+ G+ + GN +Q ++GTL+ W ++ +R
Sbjct: 326 ---SPCVLWLDEIEKGMAQDGNDNGV--SQRLLGTLLT-------------WM-AERRSR 366
Query: 195 IPIIFTGNDFSTIYAPLIRDGRMEKFYW 222
+ I+ T ND S + LIR GR+++ ++
Sbjct: 367 VFIVATSNDISRLPPELIRKGRLDEIFF 394
>gi|331005299|ref|ZP_08328688.1| ATPase of the AAA+ class [gamma proteobacterium IMCC1989]
gi|330420875|gb|EGG95152.1| ATPase of the AAA+ class [gamma proteobacterium IMCC1989]
Length = 501
Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 87/192 (45%), Gaps = 29/192 (15%)
Query: 75 LILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQ 134
++LG+ GG GKS + I + + + G L ++ GE + +RE + A V
Sbjct: 279 MLLGVQGG---GKSLAAKAIAGLWKVPLLRLDMGALYNKFHGETERNLRETLQLADNV-- 333
Query: 135 NQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNR 194
L +++I+ LG+ N ++ Q V+GTL+ W ++ +
Sbjct: 334 ---SPCVLWMDEIEKSLGQSDNEGIS---QRVLGTLLT-------------WM-AERKSP 373
Query: 195 IPIIFTGNDFSTIYAPLIRDGRMEKFYW--QPNLEDILNIVHRMYEKDGITKDEVGSIVK 252
+ I+ T ND S + L+R GR+++ ++ PNL+D I H ++ + D+ + +K
Sbjct: 374 VFIVATSNDISRLPPELLRKGRLDEIFFVDLPNLKDRAVIAHIHLKQRNVECDK--NAIK 431
Query: 253 TFPNQALDFYGA 264
F GA
Sbjct: 432 AIAEATEGFTGA 443
>gi|15227690|ref|NP_178463.1| cell division control protein 48-B [Arabidopsis thaliana]
gi|28201774|sp|Q9ZPR1.1|CD48B_ARATH RecName: Full=Cell division control protein 48 homolog B;
Short=AtCDC48b
gi|4406773|gb|AAD20084.1| putative AAA-type ATPase [Arabidopsis thaliana]
gi|17064734|gb|AAL32521.1| putative AAA-type ATPase [Arabidopsis thaliana]
gi|30725416|gb|AAP37730.1| At2g03670 [Arabidopsis thaliana]
gi|330250640|gb|AEC05734.1| cell division control protein 48-B [Arabidopsis thaliana]
Length = 603
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 75/177 (42%), Gaps = 17/177 (9%)
Query: 66 AHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRER 125
A L +K P L ++G G GK+ + Q +++S + AGE K++RE
Sbjct: 48 ARTLGLKWPRGLLLYGPPGTGKTSLVRAVVQECDAHLIVLSPHSVHRAHAGESEKVLREA 107
Query: 126 YRTASQVVQNQGKMSCLMINDIDAGLGRF-GNTQMTVNNQIVVGTLMNLSDNPTRVSIGQ 184
+ AS + K S + I++ID R + V + TLM+ S+ P
Sbjct: 108 FAEASSHAVSD-KPSVIFIDEIDVLCPRRDARREQDVRIASQLFTLMD-SNKP------- 158
Query: 185 DWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKF--YWQPNLEDILNIVHRMYEK 239
S R+ ++ + N I L R GR + PN ED L I+ ++Y K
Sbjct: 159 ----SSSAPRVVVVASTNRVDAIDPALRRAGRFDALVEVSTPNEEDRLKIL-QLYTK 210
>gi|312082008|ref|XP_003143266.1| ATPase [Loa loa]
Length = 714
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 78/177 (44%), Gaps = 15/177 (8%)
Query: 53 MASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELES 112
+ S + +++ I LL V P + G G GK+ + I + + ++ EL S
Sbjct: 156 VCSFVMYLLHPEIDGLLGVTHPSGFLLHGPPGCGKTLFAQAIAGQFKLPILKVAVTELVS 215
Query: 113 ERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIV---VGT 169
+GE + IR + A +V L+++DIDA + N Q + +IV V
Sbjct: 216 GVSGETEQKIRLLFNKAIEVAP-----CVLLLDDIDAIASKRDNAQREMERRIVSQLVAC 270
Query: 170 LMNLSDNPTRVSIGQDWRESDIT-------NRIPIIFTGNDFSTIYAPLIRDGRMEK 219
L +LS+ V + D + D++ N + +I T + TI L R GR +K
Sbjct: 271 LDDLSNPREDVELNADSTDVDLSIRKIRKGNLVLVIGTTSRVETIDPALRRAGRFDK 327
>gi|193215310|ref|YP_001996509.1| ATPase AAA [Chloroherpeton thalassium ATCC 35110]
gi|193088787|gb|ACF14062.1| AAA ATPase central domain protein [Chloroherpeton thalassium ATCC
35110]
Length = 402
Score = 43.1 bits (100), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 52/105 (49%), Gaps = 10/105 (9%)
Query: 75 LILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQ 134
+ L +G G GK+ + I +G E +I+S ELES+ GE K IR ++ A++
Sbjct: 186 VALNFYGPPGTGKTLAADAIANYLGKEILIVSYAELESKYVGETPKNIRAAFQKAAKT-- 243
Query: 135 NQGKMSCLMINDIDAGLG-RFGNTQMTVNNQIVVG---TLMNLSD 175
+ L ++ D+ LG R N + +N I V TL+ L +
Sbjct: 244 ----GAVLFFDEADSVLGKRLTNISQSADNSINVARSTTLIELDN 284
>gi|393907872|gb|EFO20801.2| ATPase [Loa loa]
Length = 741
Score = 43.1 bits (100), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 78/177 (44%), Gaps = 15/177 (8%)
Query: 53 MASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELES 112
+ S + +++ I LL V P + G G GK+ + I + + ++ EL S
Sbjct: 156 VCSFVMYLLHPEIDGLLGVTHPSGFLLHGPPGCGKTLFAQAIAGQFKLPILKVAVTELVS 215
Query: 113 ERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIV---VGT 169
+GE + IR + A +V L+++DIDA + N Q + +IV V
Sbjct: 216 GVSGETEQKIRLLFNKAIEVAP-----CVLLLDDIDAIASKRDNAQREMERRIVSQLVAC 270
Query: 170 LMNLSDNPTRVSIGQDWRESDIT-------NRIPIIFTGNDFSTIYAPLIRDGRMEK 219
L +LS+ V + D + D++ N + +I T + TI L R GR +K
Sbjct: 271 LDDLSNPREDVELNADSTDVDLSIRKIRKGNLVLVIGTTSRVETIDPALRRAGRFDK 327
>gi|90418162|ref|ZP_01226074.1| putative peptidase, M41 family [Aurantimonas manganoxydans
SI85-9A1]
gi|90337834|gb|EAS51485.1| putative peptidase, M41 family [Aurantimonas manganoxydans
SI85-9A1]
Length = 643
Score = 42.7 bits (99), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 78/180 (43%), Gaps = 24/180 (13%)
Query: 81 GGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPG---KLIRERYRTASQVVQNQG 137
G G GK+ + I + G+ + S + +S R+G G K IR + A++ +
Sbjct: 261 GPPGTGKTLLAQAIANSAGVHFIATSYAQWQSNRSGHLGDVTKAIRAVFEAAAKNLP--- 317
Query: 138 KMSCLMINDIDAGLGRFGNTQMT-VNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIP 196
+ + I++ID GR G+ + +V L+ D R RE +
Sbjct: 318 --AIVFIDEIDTVQGRGGSDRSADAWFTAIVTCLLECLDGIGR-------REG-----VV 363
Query: 197 IIFTGNDFSTIYAPLIRDGRMEKFYW--QPNLEDILNIVHRMYEKDGITKDEVGSIVKTF 254
+I ND + + A L+R GR+++ +W P+ E L + R + DGI + + F
Sbjct: 364 VIAACNDDANLDAALVRSGRLDRRFWIDLPD-EASLAGIFRHHLGDGIDASAIDRVATLF 422
>gi|221055759|ref|XP_002259018.1| N-ethylmaleimide-sensitive fusion protein [Plasmodium knowlesi
strain H]
gi|193809088|emb|CAQ39791.1| N-ethylmaleimide-sensitive fusion protein,putative [Plasmodium
knowlesi strain H]
Length = 783
Score = 42.7 bits (99), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 78/298 (26%), Positives = 126/298 (42%), Gaps = 42/298 (14%)
Query: 45 DYYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGI-EPV 103
D +F + I NYI L +K L ++G G GK+ I + + EP
Sbjct: 258 DEEFKTIFRRTFASRIYPNYIIKQLGIKHVKGLILYGPPGTGKTLIARQIGKTLNAREPK 317
Query: 104 IMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMI---NDIDAGLGRFGNTQMT 160
I++ E+ ++ G+ + IR ++ A + G+ S L I ++IDA + G++ +
Sbjct: 318 IINGPEILNKYVGQSEENIRNLFKEAEMEYKQSGENSQLHIIILDEIDAICRQRGSSASS 377
Query: 161 ---VNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRM 217
VN+ I V L++ D + N I +I N I L+R GR
Sbjct: 378 GTGVNDSI-VNQLLSKIDGVNSL------------NNILLIGMTNRIDLIDDALLRPGRF 424
Query: 218 EKF--YWQPNLE---DILNI-VHRMYEKDGITKD-EVGSIVKTFPN-QALDFYGALR--- 266
E PN E ILNI M + + ++ D + + + PN + G +R
Sbjct: 425 ELHIEISLPNKEGRIQILNIHTKSMRKSNKLSADVNIVELAEKTPNFSGAEIEGLVRNTV 484
Query: 267 SRTYDRSI-----SKWI--DDIGGVENLGNKLLKRRKDKELPVFTPPEKTVEALLESG 317
S ++R I +K I DDI ++ NK LK K P F E ++ LL +G
Sbjct: 485 SYAFERHINFNDLTKPINADDIMITKDDFNKALKETK----PAFGAEEDVIDGLLSNG 538
>gi|255580390|ref|XP_002531022.1| Transitional endoplasmic reticulum ATPase, putative [Ricinus
communis]
gi|223529397|gb|EEF31360.1| Transitional endoplasmic reticulum ATPase, putative [Ricinus
communis]
Length = 1029
Score = 42.7 bits (99), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 57/119 (47%), Gaps = 5/119 (4%)
Query: 37 RSFEYLQGDYYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQ 96
R+ E + G+ +L I+ ++ A L +K P L ++G G GK+ + +
Sbjct: 41 RAEEAIAGNQAALEALRELILFPILYSHEAKRLGLKWPRGLLLYGPPGTGKTSLVRAVVR 100
Query: 97 AMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQN--QGKMSCLMINDIDAGLGR 153
G V++S + AGE K++RE + S+ V + GK S + I++IDA R
Sbjct: 101 ECGAHLVVISPHSVHKAYAGESEKILREAF---SEAVSHTLSGKPSVIFIDEIDALCPR 156
>gi|156094029|ref|XP_001613052.1| N-ethylmaleimide sensitive fusion protein [Plasmodium vivax Sal-1]
gi|14578294|gb|AAF99460.1| PV1H14070_P [Plasmodium vivax]
gi|148801926|gb|EDL43325.1| N-ethylmaleimide sensitive fusion protein, putative [Plasmodium
vivax]
Length = 785
Score = 42.4 bits (98), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 78/298 (26%), Positives = 125/298 (41%), Gaps = 42/298 (14%)
Query: 45 DYYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGI-EPV 103
D +F + I NYI L +K L ++G G GK+ I + + EP
Sbjct: 260 DEEFKTIFRRTFASRIYPNYIIKQLGIKHVKGLILYGPPGTGKTLIARQIGKTLNAREPK 319
Query: 104 IMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMI---NDIDAGLGRFGNTQMT 160
I++ E+ ++ G+ + IR ++ A Q + G+ S L I ++IDA + G+ +
Sbjct: 320 IINGPEILNKYVGQSEENIRNLFKDAEQEYKQSGENSQLHIIILDEIDAICRQRGSAASS 379
Query: 161 ---VNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRM 217
VN+ I V L++ D + N I +I N I L+R GR
Sbjct: 380 GTGVNDSI-VNQLLSKIDGVNSL------------NNILLIGMTNRIDLIDDALLRPGRF 426
Query: 218 EKF--YWQPNLE---DILNI-VHRMYEKDGITKD-EVGSIVKTFPN-QALDFYGALR--- 266
E PN E ILNI M + + ++ D + + + PN + G +R
Sbjct: 427 ELHIEISLPNKEGRIQILNIHTKSMRKSNKLSADVNIVELAEKTPNFSGAEIEGLVRNTV 486
Query: 267 SRTYDRSI-----SKWI--DDIGGVENLGNKLLKRRKDKELPVFTPPEKTVEALLESG 317
S ++R I +K I DDI + +K LK K P F E ++ LL +G
Sbjct: 487 SYAFERHINFNDLTKPINADDIMITQKDFDKALKETK----PAFGAEEDVIDGLLSNG 540
>gi|448609636|ref|ZP_21660667.1| ATPase AAA [Haloferax mucosum ATCC BAA-1512]
gi|445746653|gb|ELZ98114.1| ATPase AAA [Haloferax mucosum ATCC BAA-1512]
Length = 587
Score = 42.0 bits (97), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 52/108 (48%), Gaps = 2/108 (1%)
Query: 69 LNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRT 128
L + +P +L ++G G GKS+ E I +G I+S G++ S+ K +++ +
Sbjct: 372 LGIPIPSLL-LYGPPGTGKSYLAEAIAGEIGYPYAILSGGDILSQWINASAKQVKQLFSE 430
Query: 129 ASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDN 176
A + G + + +++ID+ L + G +Q VV + +N
Sbjct: 431 AKAIADQTGGV-VVFVDEIDSVLSKRGGANQHAEDQKVVNEFLTHLEN 477
>gi|297742735|emb|CBI35369.3| unnamed protein product [Vitis vinifera]
Length = 3499
Score = 42.0 bits (97), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 70/156 (44%), Gaps = 17/156 (10%)
Query: 66 AHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRER 125
A L +K P L ++G G GK+ + + G +S + AGE +++RE
Sbjct: 42 AQTLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTTISPHTVHRAHAGESERILREA 101
Query: 126 YRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQ---MTVNNQIVVGTLMNLSDNPTRVSI 182
+ AS + GK S + I++IDA R + + + + +Q+ TLM+ S+ P S+
Sbjct: 102 FSEASSHAVS-GKPSVIFIDEIDALCPRRSSRREQDIRLASQLF--TLMD-SNKPLSASV 157
Query: 183 GQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRME 218
Q + ++ + N I L R GR +
Sbjct: 158 PQ----------VVVVASTNRVDAIDPALRRSGRFD 183
>gi|359484119|ref|XP_002267202.2| PREDICTED: cell division control protein 48 homolog B-like [Vitis
vinifera]
Length = 605
Score = 42.0 bits (97), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 70/156 (44%), Gaps = 17/156 (10%)
Query: 66 AHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRER 125
A L +K P L ++G G GK+ + + G +S + AGE +++RE
Sbjct: 42 AQTLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTTISPHTVHRAHAGESERILREA 101
Query: 126 YRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQ---MTVNNQIVVGTLMNLSDNPTRVSI 182
+ AS + GK S + I++IDA R + + + + +Q+ TLM+ S+ P S+
Sbjct: 102 FSEASSHAVS-GKPSVIFIDEIDALCPRRSSRREQDIRLASQLF--TLMD-SNKPLSASV 157
Query: 183 GQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRME 218
Q + ++ + N I L R GR +
Sbjct: 158 PQ----------VVVVASTNRVDAIDPALRRSGRFD 183
>gi|83648777|ref|YP_437212.1| ATPase [Hahella chejuensis KCTC 2396]
gi|83636820|gb|ABC32787.1| ATPase of the AAA+ class [Hahella chejuensis KCTC 2396]
Length = 495
Score = 41.6 bits (96), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 84/172 (48%), Gaps = 28/172 (16%)
Query: 75 LILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQ 134
++LG+ GG GKS + + G+ + M G L ++ GE + +RE + A +
Sbjct: 272 MLLGVQGG---GKSLAAKAVAGMWGLPLLRMDMGALYNKFFGETERNMREALQLAELM-- 326
Query: 135 NQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNR 194
L I++I+ GLG+ GN Q ++ V+GTL+ W S+ +
Sbjct: 327 ---SPCVLWIDEIEKGLGQDGNDQGV--SKRVLGTLLT-------------WM-SENKHP 367
Query: 195 IPIIFTGNDFSTIYAPLIRDGRMEKFYW--QPNLEDILNIVHRMY-EKDGIT 243
+ ++ T N+ + L+R GR+++ ++ P LE + NI+ ++ +K G+
Sbjct: 368 VFLVATANNIKALPPELMRKGRIDEIFFVDLPTLE-VRNIIFSIHLQKRGLA 418
>gi|296412774|ref|XP_002836095.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295629900|emb|CAZ80252.1| unnamed protein product [Tuber melanosporum]
Length = 648
Score = 41.6 bits (96), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 59/121 (48%), Gaps = 7/121 (5%)
Query: 56 LLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERA 115
++ +V + L + PL + G G GK+ +I + +G + +SA + S +
Sbjct: 108 IVMALVHPEVYQLTGMPPPLGVLFHGPPGCGKTMLANIIAEEVGRPFIAISAPSIVSGMS 167
Query: 116 GEPGKLIRERYRTASQVVQNQGKMSCLM-INDIDAGLGRFGNTQMTVNNQIVVGTLMNLS 174
GE K +RE + A + K CLM I++IDA + + NT+ ++ ++V L +
Sbjct: 168 GESEKRLRELFEEARE------KAPCLMFIDEIDAIMLKRDNTERGMDRRLVAQMLTCMD 221
Query: 175 D 175
D
Sbjct: 222 D 222
>gi|357167908|ref|XP_003581390.1| PREDICTED: cell division control protein 48 homolog B-like
[Brachypodium distachyon]
Length = 600
Score = 41.2 bits (95), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 83/181 (45%), Gaps = 23/181 (12%)
Query: 66 AHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRER 125
+ LL +K P L ++G G GK+ + + + +++ + AGE K +RE
Sbjct: 86 SRLLGLKWPRGLLLYGPPGTGKTSLVQAMVRECNAHLTMINPYSVHKAHAGEGEKFLREA 145
Query: 126 YRTA-SQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQ 184
+ A SQ +QG+ + + I+++DA R N + + +VG L+ L D +
Sbjct: 146 FSEAYSQA--SQGRPAIIFIDELDAICPRRDNKREQESR--IVGQLLTLMDGNKK----- 196
Query: 185 DWRESDITNRIP---IIFTGNDFSTIYAPLIRDGRM--EKFYWQPNLEDILNIVHRMYEK 239
T ++P ++ + N I L R GR E P+LE+ L I+ ++Y K
Sbjct: 197 -------TVKLPHVVVVASTNRVDAIDPALRRPGRFDSEIEVTVPSLEERLQIL-KLYTK 248
Query: 240 D 240
+
Sbjct: 249 N 249
>gi|326506470|dbj|BAJ86553.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 569
Score = 41.2 bits (95), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 82/177 (46%), Gaps = 14/177 (7%)
Query: 66 AHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRER 125
+ LL +K P L ++G G GK+ + + + +++ + AGE K +RE
Sbjct: 54 SRLLGLKWPRGLLLYGPPGTGKTSLVQAMVRECNAHLTMINPYSVHKAHAGEGEKFLREA 113
Query: 126 YRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQD 185
+ + S +QG+ + + I+++DA R N++ ++I VG L+ L D +
Sbjct: 114 F-SESYSQASQGRPAIIFIDELDAICPRR-NSRREQESRI-VGQLLTLMDG--------N 162
Query: 186 WRESDITNRIPIIFTGNDFSTIYAPLIRDGRM--EKFYWQPNLEDILNIVHRMYEKD 240
+ S + ++ + N I L R GR E P LE+ L I+ ++Y K+
Sbjct: 163 KKSSKKLPHVVVVASTNRVDAIDPALRRPGRFDSEIEVTVPTLEERLQIL-KLYSKN 218
>gi|389583566|dbj|GAB66301.1| N-ethylmaleimide sensitive fusion protein [Plasmodium cynomolgi
strain B]
Length = 744
Score = 41.2 bits (95), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 78/297 (26%), Positives = 123/297 (41%), Gaps = 40/297 (13%)
Query: 45 DYYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGI-EPV 103
D +F + I NYI L +K L ++G G GK+ I + + EP
Sbjct: 219 DEEFKTIFRRTFASRIYPNYIIKQLGIKHVKGLILYGPPGTGKTLIARQIGKTLNAREPK 278
Query: 104 IMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMI---NDIDAGLGRFGN--TQ 158
I++ E+ ++ G+ + IR ++ A + G+ S L I ++IDA + G+ +
Sbjct: 279 IINGPEILNKYVGQSEENIRNLFKDAELEYKQSGENSQLHIIILDEIDAICRQRGSAASS 338
Query: 159 MTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRME 218
T N +V L++ D + N I +I N I L+R GR E
Sbjct: 339 GTGVNDSIVNQLLSKIDGVNSL------------NNILLIGMTNRIDLIDDALLRPGRFE 386
Query: 219 KF--YWQPNLE---DILNI-VHRMYEKDGITKD-EVGSIVKTFPN-QALDFYGALR---S 267
PN E ILNI M + + ++ D + + + PN + G +R S
Sbjct: 387 LHIEISLPNKEGRIQILNIHTKSMRKSNKLSADVNIVELAEKTPNFSGAEIEGLVRNTVS 446
Query: 268 RTYDRSI-----SKWI--DDIGGVENLGNKLLKRRKDKELPVFTPPEKTVEALLESG 317
++R I +K I DDI +N K LK K P F E +E LL +G
Sbjct: 447 YAFERHINFNDLTKPINADDIMITKNDFYKALKETK----PAFGAEEDVIEGLLSNG 499
>gi|119490332|ref|ZP_01622810.1| AAA ATPase, central region [Lyngbya sp. PCC 8106]
gi|119453991|gb|EAW35145.1| AAA ATPase, central region [Lyngbya sp. PCC 8106]
Length = 519
Score = 40.8 bits (94), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 85/212 (40%), Gaps = 42/212 (19%)
Query: 68 LLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYR 127
L N K L+ GI +G GKS + I + + + G L GE +R+ +
Sbjct: 259 LPNPKGVLLAGI---QGTGKSLSAKTIAAEWKLPLLRLDVGRLFGGIVGESESRVRQVIK 315
Query: 128 TASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWR 187
A V L I++ID + + + + V GT + W
Sbjct: 316 LAEAV-----SPCVLWIDEIDKAFSQNYSRGDSGTSNRVFGTFIT-------------WL 357
Query: 188 ESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYW-----QPNLEDILNI-VHRMYEKDG 241
++ T+ + I+ T N+ + A LIR GR+++ +W QP E I + +HR+
Sbjct: 358 -AEKTSPVFIVATANNVEALPAELIRKGRLDEIFWIGLPSQPEREQIFQVHLHRLRP--- 413
Query: 242 ITKDEVGSIVKTFPNQALDFYGALRSRTYDRS 273
+ F N DF+ L SR+ D S
Sbjct: 414 ----------ERFKNNEFDFH-LLASRSLDFS 434
>gi|321455602|gb|EFX66730.1| hypothetical protein DAPPUDRAFT_302447 [Daphnia pulex]
Length = 515
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 58/247 (23%), Positives = 102/247 (41%), Gaps = 31/247 (12%)
Query: 69 LNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRT 128
LNV P + I+G G GKS + + +SA EL S G+ K++ + +R
Sbjct: 282 LNVPRPKGVLIYGPPGCGKSLLVRAAATSCTASFLSISAAELFSPFVGDSEKMVSDLFRR 341
Query: 129 ASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQI-VVGTLMNLSDNPTRVSIGQDWR 187
A Q V + L ++++DA +G N Q+ VV L+ D +S Q
Sbjct: 342 ARQAVP-----AILFLDELDAMVGGRTNANHGRTAQLGVVAALLQEMDG---ISSSQG-- 391
Query: 188 ESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYW--QPNLEDILNIVHRMYEKDGITKD 245
+ ++ N I L+R GR + P++ L ++ + K + +
Sbjct: 392 -------VVVVGATNRPDKIDGALLRPGRFDSLVHIPHPDVTARLAVLQSLCRKMPLKEV 444
Query: 246 EVGSIVKTFPNQALDFYGA-LRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVFT 304
+ +K + F GA L S T + ++ +D+ E +L+R ++ L
Sbjct: 445 D----LKNLAERTQLFSGADLESLTKEAALGALEEDLSAFE-----ILQRHFEQAL-AKV 494
Query: 305 PPEKTVE 311
PP T+E
Sbjct: 495 PPSITLE 501
>gi|238610683|ref|XP_002397785.1| hypothetical protein MPER_01728 [Moniliophthora perniciosa FA553]
gi|215472970|gb|EEB98715.1| hypothetical protein MPER_01728 [Moniliophthora perniciosa FA553]
Length = 226
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 59/123 (47%), Gaps = 8/123 (6%)
Query: 53 MASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELES 112
+A LCH + Y++ L V P + + G G GK+ I +G+ V +SA + S
Sbjct: 68 VAMPLCH-PEIYLS--LGVSPPRGVLLHGPPGCGKTLLANAIAGELGVPFVNISAPSIVS 124
Query: 113 ERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMN 172
+GE K +RE + A +V S L I++IDA G+ + Q + +IV L
Sbjct: 125 GMSGESEKGLREAFDEAKRVAP-----SLLFIDEIDAITGKRESAQREMERRIVAQFLTC 179
Query: 173 LSD 175
+ D
Sbjct: 180 MDD 182
>gi|259488300|tpe|CBF87639.1| TPA: AAA family ATPase/60S ribosome export protein Rix7, putative
(AFU_orthologue; AFUA_1G09210) [Aspergillus nidulans
FGSC A4]
Length = 729
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 83/198 (41%), Gaps = 30/198 (15%)
Query: 44 GDYYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPV 103
GD I P+ + Y+A NV+ P + + G G GK+ +G+ +
Sbjct: 178 GDLVILPMTRPQV-------YLAS--NVQPPRGVLLHGPPGCGKTMIANAFAAELGVPFI 228
Query: 104 IMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLM-INDIDAGLGRFGNTQMTVN 162
+SA + S +GE K +RE + A ++ CL+ I++IDA + N+Q +
Sbjct: 229 SISAPSIVSGMSGESEKALREHFEEAKRLA------PCLIFIDEIDAITPKRENSQREME 282
Query: 163 NQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEK--- 219
+IV L + D + G+ + ++ N ++ A L R GR +K
Sbjct: 283 KRIVAQLLTCMDDLALEKTDGKP---------VIVLAATNRPDSLDAALRRGGRFDKEIN 333
Query: 220 --FYWQPNLEDILNIVHR 235
+P E IL + R
Sbjct: 334 MTVPSEPVREQILRALTR 351
>gi|330802418|ref|XP_003289214.1| hypothetical protein DICPUDRAFT_16006 [Dictyostelium purpureum]
gi|325080701|gb|EGC34245.1| hypothetical protein DICPUDRAFT_16006 [Dictyostelium purpureum]
Length = 732
Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 76/167 (45%), Gaps = 28/167 (16%)
Query: 77 LGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQ 136
L +WG G GKS + I +M I + + ++ S+ GE ++IRE +++A +
Sbjct: 519 LLLWGPSGCGKSLMVKAIATSMSINFISIKGSDIYSKWLGESERIIRELFKSA------R 572
Query: 137 GKMSCLMIND-IDAGLGRFGNTQMTVNN----QIVVGTLMNLSDNPTRVSIGQDWRESDI 191
C+M D ID+ G++ + + + ++ L+N D +
Sbjct: 573 LSSPCIMFFDEIDSLALSRGDSNDSSEDGGTGKRILSQLLNEMDG------------IQV 620
Query: 192 TNRIPIIFTGNDFSTIYAPLIRDGRMEKFYW--QPNLE---DILNIV 233
++I +I N +I + L+R GR+E P LE DILN++
Sbjct: 621 KSQIFLIGCTNTIDSIDSALLRPGRLETLIKVDLPTLEDRIDILNVI 667
>gi|402589696|gb|EJW83627.1| ATPase [Wuchereria bancrofti]
Length = 644
Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 79/180 (43%), Gaps = 23/180 (12%)
Query: 58 CHIVKNYIAHLLNVKVPLILGI--------WGGKGQGKSFQTELIFQAMGIEPVIMSAGE 109
C V +++ HL + ++ +LG+ G G GK+ + + + + ++ E
Sbjct: 54 CLEVCSFVIHLFHPEIDDVLGVTHPTGFLLHGPPGCGKTLFAQAVAGQFNLPILKVAVTE 113
Query: 110 LESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIV--- 166
L S +GE + IR + A + L+++DIDA + N Q + +IV
Sbjct: 114 LVSGVSGESEQKIRLLFTKAI-----EASPCILLLDDIDAIASKRDNAQREMERRIVSQL 168
Query: 167 VGTLMNLSDNPTRVSIGQDWRESDIT-------NRIPIIFTGNDFSTIYAPLIRDGRMEK 219
+ L +LS+ + + + + DI+ N + +I T + TI L R GR +K
Sbjct: 169 IACLDDLSNPRKDIELNANSTDVDISVRKMHKGNGVLVIGTTSRVETIDPALRRAGRFDK 228
>gi|124504725|ref|XP_001351105.1| N-ethylmaleimide sensitive fusion protein, putative [Plasmodium
falciparum 3D7]
gi|3647351|emb|CAB10575.1| N-ethylmaleimide sensitive fusion protein, putative [Plasmodium
falciparum 3D7]
Length = 783
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 78/298 (26%), Positives = 123/298 (41%), Gaps = 42/298 (14%)
Query: 45 DYYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGI-EPV 103
D +F + I NYI L++K + ++G G GK+ I + + EP
Sbjct: 258 DEEFKTIFRRTFASRIYPNYIIKQLSIKHVKGMILYGPPGTGKTLIARQIGKTLNAREPK 317
Query: 104 IMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMI---NDIDAGL---GRFGNT 157
I++ E+ ++ G+ + IR ++ A + G+ S L I ++IDA G G++
Sbjct: 318 IINGPEILNKYVGQSEENIRNLFKDAEMEYKQSGENSLLHIIILDEIDAICRQRGNVGSS 377
Query: 158 QMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRM 217
VN+ VV L++ D + N I +I N I L+R GR
Sbjct: 378 STGVNDS-VVNQLLSKIDGVNSL------------NNILLIGMTNRIDLIDEALLRPGRF 424
Query: 218 EKF--YWQPNLE---DILNI-VHRMYEKDGITKD-EVGSIVKTFPN-QALDFYGALR--- 266
E PN E ILNI M + ++ D + + + PN + G +R
Sbjct: 425 ELHIEISLPNKEGRIQILNIHTKNMRMSNKLSSDVNILELAERTPNFSGAEIEGLVRNTV 484
Query: 267 SRTYDRSI-----SKWI--DDIGGVENLGNKLLKRRKDKELPVFTPPEKTVEALLESG 317
S ++R I +K I DDI +N K LK K P F E + LL +G
Sbjct: 485 SYAFERHINFNDLTKPINADDIMITKNDFMKALKETK----PAFGAEEDIIGNLLCNG 538
>gi|67521818|ref|XP_658970.1| hypothetical protein AN1366.2 [Aspergillus nidulans FGSC A4]
gi|40746393|gb|EAA65549.1| hypothetical protein AN1366.2 [Aspergillus nidulans FGSC A4]
Length = 628
Score = 40.0 bits (92), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 83/198 (41%), Gaps = 30/198 (15%)
Query: 44 GDYYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPV 103
GD I P+ + Y+A NV+ P + + G G GK+ +G+ +
Sbjct: 77 GDLVILPMTRPQV-------YLAS--NVQPPRGVLLHGPPGCGKTMIANAFAAELGVPFI 127
Query: 104 IMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLM-INDIDAGLGRFGNTQMTVN 162
+SA + S +GE K +RE + A ++ CL+ I++IDA + N+Q +
Sbjct: 128 SISAPSIVSGMSGESEKALREHFEEAKRLA------PCLIFIDEIDAITPKRENSQREME 181
Query: 163 NQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEK--- 219
+IV L + D + G+ + ++ N ++ A L R GR +K
Sbjct: 182 KRIVAQLLTCMDDLALEKTDGKP---------VIVLAATNRPDSLDAALRRGGRFDKEIN 232
Query: 220 --FYWQPNLEDILNIVHR 235
+P E IL + R
Sbjct: 233 MTVPSEPVREQILRALTR 250
>gi|429217576|ref|YP_007175566.1| AAA ATPase [Caldisphaera lagunensis DSM 15908]
gi|429134105|gb|AFZ71117.1| AAA family ATPase, CDC48 subfamily [Caldisphaera lagunensis DSM
15908]
Length = 734
Score = 40.0 bits (92), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 50/229 (21%), Positives = 95/229 (41%), Gaps = 38/229 (16%)
Query: 69 LNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRT 128
+ V+ P + ++G G GK+ + + G + + E+ S+ GE + IRE ++
Sbjct: 488 IGVQPPKGVLLFGPPGTGKTLLAKAVATESGANFITIRGPEVLSKWVGESERAIREIFKK 547
Query: 129 ASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRE 188
A Q + ++IDA G + T + +V L+ D T
Sbjct: 548 ARQYAP-----VVVFFDEIDAIAALRGIDEGTRVGERIVSQLLTEIDGIT---------- 592
Query: 189 SDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQP------------------NLEDIL 230
D+ N + +I N + LIR GR+EK + P L D +
Sbjct: 593 -DLQNVV-VIAATNRPEMVDPALIRPGRLEKLVYVPPPDEKGRVEILQIHTRNVPLADDV 650
Query: 231 NIVHRMYEKDGITKDEVGSIVKTFPNQAL--DFY-GALRSRTYDRSISK 276
+++ +G T ++ ++V+ QAL D G ++++ +D ++SK
Sbjct: 651 DLIEIAKRTNGYTGADLAALVREAAMQALREDLQNGIVKNKHFDVALSK 699
>gi|357509249|ref|XP_003624913.1| Cell division control protein-like protein [Medicago truncatula]
gi|124361206|gb|ABN09178.1| AAA ATPase, central region [Medicago truncatula]
gi|355499928|gb|AES81131.1| Cell division control protein-like protein [Medicago truncatula]
Length = 560
Score = 39.7 bits (91), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 74/172 (43%), Gaps = 16/172 (9%)
Query: 66 AHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRER 125
A L +K P L ++G G GK+ I + G I+S + S AGE + +RE
Sbjct: 46 AKQLGLKFPRGLLLYGPPGTGKTSLVRAIVEECGANLTIISPNTVNSALAGESERNLREA 105
Query: 126 YRTASQVVQNQGKMSCLMINDIDAGLGRFGNT-QMTVNNQIVVGTLMNLSDNPTRVSIGQ 184
+ AS GK S + I++ID R + ++ V + TLM+ S+ T + G
Sbjct: 106 FSEASSHAA-LGKSSVIFIDEIDGLCPRRDSIRELDVRIASQLCTLMD-SNKATSSNPG- 162
Query: 185 DWRESDITNRIPIIFTGNDFSTIYAPLIRDGR--MEKFYWQPNLEDILNIVH 234
+ ++ + N I L R GR +E PN E+ L I+
Sbjct: 163 ----------VVVVASTNRVDAIDPALRRYGRFDIETEVTVPNEEERLQILE 204
>gi|449478622|ref|XP_004155372.1| PREDICTED: LOW QUALITY PROTEIN: cell division control protein 48
homolog B-like [Cucumis sativus]
Length = 614
Score = 39.7 bits (91), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 66 AHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRER 125
A + +K P L ++G G GK+ I Q G +S + AGE K++RE
Sbjct: 49 AKKIGLKWPRGLLLYGPPGTGKTSLVRAIVQESGAHLTTISPHSVHRAHAGESEKVLREA 108
Query: 126 YRTASQVVQNQGKMSCLMINDIDA 149
+ AS + + G+ S + I++IDA
Sbjct: 109 FTKASSLAIS-GRPSVIFIDEIDA 131
>gi|408790152|ref|ZP_11201783.1| AAA ATPase, central region [Lactobacillus florum 2F]
gi|408520592|gb|EKK20633.1| AAA ATPase, central region [Lactobacillus florum 2F]
Length = 289
Score = 39.7 bits (91), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 44/78 (56%), Gaps = 6/78 (7%)
Query: 76 ILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQN 135
++ ++G G GKSF E I + MG + + ++ E+ES+ GE K I+ ++ A +
Sbjct: 76 VINLYGLPGTGKSFAAEAIAKEMGKKIIKVNYAEIESKYVGETPKNIKLLFKEAKK---- 131
Query: 136 QGKMSCLMINDIDAGLGR 153
+ + L+ ++ D+ LGR
Sbjct: 132 --EDAILIFDEADSILGR 147
>gi|449435300|ref|XP_004135433.1| PREDICTED: cell division control protein 48 homolog B-like [Cucumis
sativus]
Length = 614
Score = 39.7 bits (91), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 66 AHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRER 125
A + +K P L ++G G GK+ I Q G +S + AGE K++RE
Sbjct: 49 AKKIGLKWPRGLLLYGPPGTGKTSLVRAIVQESGAHLTTISPHSVHRAHAGESEKVLREA 108
Query: 126 YRTASQVVQNQGKMSCLMINDIDA 149
+ AS + + G+ S + I++IDA
Sbjct: 109 FTKASSLAIS-GRPSVIFIDEIDA 131
>gi|256821468|ref|YP_003145431.1| AAA ATPase [Kangiella koreensis DSM 16069]
gi|256795007|gb|ACV25663.1| AAA ATPase central domain protein [Kangiella koreensis DSM 16069]
Length = 499
Score = 39.7 bits (91), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 34/150 (22%), Positives = 68/150 (45%), Gaps = 28/150 (18%)
Query: 75 LILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQ 134
+++G+ GG GKS + + G+ + + G L S+ GE K +RE + A +
Sbjct: 276 MLVGVQGG---GKSLAAKAVAGMWGVPLLRLDFGALYSKWHGESEKNLRESLKLAEMMAP 332
Query: 135 NQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNR 194
L +++++ G+ N T ++ V+GT++ N+
Sbjct: 333 -----CVLWLDEVEKGISTGDNDGGT--SKRVLGTMLTFMQE----------------NK 369
Query: 195 IP--IIFTGNDFSTIYAPLIRDGRMEKFYW 222
+P I+ T ND S + L+R GR+++ ++
Sbjct: 370 LPIFIVATANDISALPPELVRKGRLDEIFF 399
>gi|388851908|emb|CCF54502.1| related to RIX7-AAA-type ATPase required for biogenesis and nuclear
export of 60S ribosomal subunits [Ustilago hordei]
Length = 883
Score = 39.3 bits (90), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 72/168 (42%), Gaps = 19/168 (11%)
Query: 52 FMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELE 111
+A LCH AH VK P + + G G GK+ + +G+ + +SA +
Sbjct: 169 LIAMPLCH--PEIYAHT-GVKPPRGVLLHGPPGCGKTMLAGAVAGELGVPFLSISAPSVV 225
Query: 112 SERAGEPGKLIRERYRTASQVVQNQGKMSC-LMINDIDAGLGRFGNTQMTVNNQIVVGTL 170
S +GE K IR+ + A+ + C L I++IDA + Q + +IV L
Sbjct: 226 SGTSGESEKTIRDTFDEAASIAP------CILFIDEIDAITPKRETAQREMERRIVAQLL 279
Query: 171 MNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRME 218
+L D W ++D + II N ++ + L R GR +
Sbjct: 280 TSLDD--------LSWEKTD-GKPVMIIGATNRPDSLDSALRRAGRFD 318
>gi|227202724|dbj|BAH56835.1| AT1G73110 [Arabidopsis thaliana]
Length = 115
Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/24 (70%), Positives = 22/24 (91%)
Query: 1 MNIAVGARAGVIDPLFAGNFLGKD 24
+NIAVGAR+G+ID +F G+FLGKD
Sbjct: 91 VNIAVGARSGMIDDVFIGDFLGKD 114
>gi|325000843|ref|ZP_08121955.1| ATPase [Pseudonocardia sp. P1]
Length = 420
Score = 39.3 bits (90), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 70/160 (43%), Gaps = 25/160 (15%)
Query: 69 LNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRT 128
L V+ P + ++G G GK+F + + + + EL + GE + +RE +R
Sbjct: 187 LGVEAPRGVLLYGPPGGGKTFLLRALAGSGDLNVFAVKGAELLDKYVGESERAVRELFRR 246
Query: 129 ASQVVQNQGKMSCLMINDIDA-GLGRFGNTQMTVNNQIVVGTLMNL-SDNPTR--VSIGQ 184
A++ + + ++++DA R G+T V +++V L L P R V +G
Sbjct: 247 AAEAAP-----ALIFLDEVDALAPRRGGSTDAGVADRVVAALLTELDGATPLREVVVVGA 301
Query: 185 DWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQP 224
TNR +I L+R GR+E+ + P
Sbjct: 302 -------TNRPELIDPA---------LLRPGRLERLVFVP 325
>gi|345569478|gb|EGX52344.1| hypothetical protein AOL_s00043g133 [Arthrobotrys oligospora ATCC
24927]
Length = 851
Score = 39.3 bits (90), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 53/220 (24%), Positives = 98/220 (44%), Gaps = 21/220 (9%)
Query: 59 HIVKNYIAHLL---------NVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGE 109
I++ +IA L N+ PL + ++G G GK+ I G I+ +
Sbjct: 297 EILRTHIASSLLHFKRFTRSNLTPPLGILLYGPPGTGKTMLLRSIATEAGANNFIIDS-S 355
Query: 110 LESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGT 169
L + GE IR+ + A + V + + S + I++IDA + G T T ++++V
Sbjct: 356 LIGKFLGESEASIRKVFAEAKKSVDGKNR-SIIFIDEIDAFAPKRGGTDTTSDSRLVTTL 414
Query: 170 LMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQP----- 224
L + ++G+D + D ++R+ +I N + I L R GR + P
Sbjct: 415 LTEMD---ALAAVGEDDGKKD-SSRVIVIAATNRPNGIDPALRRPGRFDLEIEIPIPDAK 470
Query: 225 NLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGA 264
+ +IL ++ + E + + G I ++ N+A F GA
Sbjct: 471 SRLEILKLLLKDVETEFDKSVDAGHIT-SWANRAHGFVGA 509
>gi|354546783|emb|CCE43515.1| hypothetical protein CPAR2_211590 [Candida parapsilosis]
Length = 391
Score = 39.3 bits (90), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 32/152 (21%), Positives = 68/152 (44%), Gaps = 19/152 (12%)
Query: 79 IWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGK 138
++G G GK+ + + A + ++ E + GE +++R+ +R A +
Sbjct: 174 LYGPPGTGKTMLVKAVANATKASFIRINGSEFVQKYLGEGPRMVRDVFRLA-----RENS 228
Query: 139 MSCLMINDIDAGLGRFGNTQMTVNNQI--VVGTLMNLSDNPTRVSIGQDWRESDITNRIP 196
+ + I++IDA + + Q + ++ ++ L+N D D T+ +
Sbjct: 229 PAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDG------------FDQTSNVK 276
Query: 197 IIFTGNDFSTIYAPLIRDGRMEKFYWQPNLED 228
+I N T+ L+R GR+++ PNL+D
Sbjct: 277 VIMATNRADTLDPALLRPGRLDRKIEFPNLKD 308
>gi|403225149|gb|AFR24761.1| ATPase AAA family [uncultured Pelagomonas]
Length = 493
Score = 39.3 bits (90), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 44/199 (22%), Positives = 83/199 (41%), Gaps = 32/199 (16%)
Query: 73 VPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQV 132
VP L + G +G GKS + I + + + G L + GE +RE R A
Sbjct: 258 VPRGLLLVGVQGTGKSLTAKAIAHDWQLPLLRLDFGRLFAGIVGESESRVREMIRVA--- 314
Query: 133 VQNQGKMSCLM-INDIDAGLGRF-GNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESD 190
+ C++ I++ID + G N+++ L LS+
Sbjct: 315 ---EALSPCIVWIDEIDKSFNQSEGKGDSGTTNRVLATFLTWLSEK-------------- 357
Query: 191 ITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYW-----QPNLEDILNIVHRMYEKDGITKD 245
T+++ ++ T N+F + LIR GR ++ ++ + + I ++ D +
Sbjct: 358 -TSQVFVVATANNFEVLPLELIRKGRFDEIFFVGLPVESERKQIFEVLLSQLRPDSVQNY 416
Query: 246 EVGSIVKTFPNQALDFYGA 264
++ S+ K +A+DF GA
Sbjct: 417 DLQSLSK----KAIDFSGA 431
>gi|149248778|ref|XP_001528776.1| 26S protease regulatory subunit 6B [Lodderomyces elongisporus NRRL
YB-4239]
gi|146448730|gb|EDK43118.1| 26S protease regulatory subunit 6B [Lodderomyces elongisporus NRRL
YB-4239]
Length = 388
Score = 39.3 bits (90), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 32/152 (21%), Positives = 68/152 (44%), Gaps = 19/152 (12%)
Query: 79 IWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGK 138
++G G GK+ + + A + ++ E + GE +++R+ +R A +
Sbjct: 171 LYGPPGTGKTMLVKAVANATKASFIRINGSEFVQKYLGEGPRMVRDVFRLA-----RENS 225
Query: 139 MSCLMINDIDAGLGRFGNTQMTVNNQI--VVGTLMNLSDNPTRVSIGQDWRESDITNRIP 196
+ + I++IDA + + Q + ++ ++ L+N D D T+ +
Sbjct: 226 PAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDG------------FDQTSNVK 273
Query: 197 IIFTGNDFSTIYAPLIRDGRMEKFYWQPNLED 228
+I N T+ L+R GR+++ PNL+D
Sbjct: 274 VIMATNRADTLDPALLRPGRLDRKIEFPNLKD 305
>gi|448513293|ref|XP_003866916.1| Pr26 protein [Candida orthopsilosis Co 90-125]
gi|380351254|emb|CCG21478.1| Pr26 protein [Candida orthopsilosis Co 90-125]
Length = 391
Score = 39.3 bits (90), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 32/152 (21%), Positives = 68/152 (44%), Gaps = 19/152 (12%)
Query: 79 IWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGK 138
++G G GK+ + + A + ++ E + GE +++R+ +R A +
Sbjct: 174 LYGPPGTGKTMLVKAVANATKASFIRINGSEFVQKYLGEGPRMVRDVFRLA-----RENS 228
Query: 139 MSCLMINDIDAGLGRFGNTQMTVNNQI--VVGTLMNLSDNPTRVSIGQDWRESDITNRIP 196
+ + I++IDA + + Q + ++ ++ L+N D D T+ +
Sbjct: 229 PAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDG------------FDQTSNVK 276
Query: 197 IIFTGNDFSTIYAPLIRDGRMEKFYWQPNLED 228
+I N T+ L+R GR+++ PNL+D
Sbjct: 277 VIMATNRADTLDPALLRPGRLDRKIEFPNLKD 308
>gi|325182391|emb|CCA16844.1| cell division cycle protein 48 putative [Albugo laibachii Nc14]
Length = 854
Score = 38.9 bits (89), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 85/193 (44%), Gaps = 31/193 (16%)
Query: 79 IWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRE---RYRTASQVVQN 135
++G G GKS +++ + V + + E+ S+ G+ + IR+ R R+AS
Sbjct: 617 LYGPSGCGKSLLAKVLAARANVNFVSIKSSEIMSKYFGDSEQAIRQVFARARSASP---- 672
Query: 136 QGKMSCLMINDIDA-GLGRFGNTQM-----------TVNNQIVVGTLMNLSDNPTRVS-I 182
S L ++ DA RFG Q +V N+I + T +N D
Sbjct: 673 ----SILFFDEFDAVACKRFGEAQTKGSDAAAFDGSSVYNRI-LSTFLNEMDGIGHAKRS 727
Query: 183 GQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEK--FYWQPNLED---ILNIV-HRM 236
G ++++ ++ +I N + LIR GR++K F P+L+D IL + RM
Sbjct: 728 GYQAQKTENRKQVLVIAATNRVDALDQALIRPGRIDKKVFLHYPDLQDRKAILRLCTARM 787
Query: 237 YEKDGITKDEVGS 249
KD + D + S
Sbjct: 788 PLKDDVDLDVLAS 800
>gi|15922918|ref|NP_378587.1| cell division control protein [Sulfolobus tokodaii str. 7]
gi|342306740|dbj|BAK54829.1| ATPase [Sulfolobus tokodaii str. 7]
Length = 700
Score = 38.9 bits (89), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 64/156 (41%), Gaps = 17/156 (10%)
Query: 69 LNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRT 128
+ ++P + ++G G GK+ + G + ++ EL S GE + IRE ++
Sbjct: 460 MKAEIPSGILLYGPPGTGKTMLARAVAHESGANFIAINGPELMSMWVGETERAIREVFKK 519
Query: 129 ASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRE 188
A Q + + ++IDA G V ++IV L + R RE
Sbjct: 520 A-----RQSSPTIIFFDEIDAIAVARGADPNKVTDRIVSQLLTEMDGISKR-------RE 567
Query: 189 SDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQP 224
++ II N I L+R GR+EK + P
Sbjct: 568 -----KVVIIAATNRPDIIDPALLRPGRLEKLIYVP 598
>gi|123966592|ref|YP_001011673.1| AAA family ATPase [Prochlorococcus marinus str. MIT 9515]
gi|123200958|gb|ABM72566.1| ATPase of the AAA+ family [Prochlorococcus marinus str. MIT 9515]
Length = 488
Score = 38.9 bits (89), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 35/162 (21%), Positives = 69/162 (42%), Gaps = 24/162 (14%)
Query: 81 GGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMS 140
G +G GKS + I Q+ + + + G L S G RT +++ +
Sbjct: 267 GPQGTGKSLTAKSISQSWSMPLLRLDVGRLFSSLVGS------SEARTRETILRAEAMSP 320
Query: 141 CLM-INDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIF 199
C++ I++ID G G + + +++ L +++ + V + I
Sbjct: 321 CILWIDEIDKGFGGDARSDGGTSQRVLASLLTWMAEKESAVFV---------------IA 365
Query: 200 TGNDFSTIYAPLIRDGRMEKFYW--QPNLEDILNIVHRMYEK 239
T N + A L+R GR ++ ++ PN E+ L+I+ +K
Sbjct: 366 TANAIDKLPAELLRKGRFDEIFFLDLPNSEERLSILDLHLKK 407
>gi|70953745|ref|XP_745954.1| N-ethylmaleimide-sensitive fusion protein [Plasmodium chabaudi
chabaudi]
gi|56526434|emb|CAH74629.1| N-ethylmaleimide-sensitive fusion protein, putative [Plasmodium
chabaudi chabaudi]
Length = 776
Score = 38.9 bits (89), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 76/298 (25%), Positives = 123/298 (41%), Gaps = 42/298 (14%)
Query: 45 DYYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGI-EPV 103
D +F + I NYI L +K + ++G G GK+ I + + EP
Sbjct: 249 DEEFKTIFRRTFASRIYPNYIIKQLGIKHVKGMILYGPPGTGKTLIARQIGKTLNAREPK 308
Query: 104 IMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMI---NDIDAGLGRFGNTQMT 160
I++ E+ ++ G+ + IR ++ A + G+ S L I ++IDA + G+ +
Sbjct: 309 IINGPEILNKYVGQSEENIRNLFKEAELEYKQSGENSLLHIIILDEIDAICRQRGSAASS 368
Query: 161 ---VNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRM 217
VN+ I V L++ D + N I +I N I L+R GR
Sbjct: 369 GSGVNDSI-VNQLLSKIDGVNSL------------NNILLIGMTNRIDLIDEALLRPGRF 415
Query: 218 EKF--YWQPNLE---DILNI-VHRMYEKDGITKD-EVGSIVKTFPN-QALDFYGALR--- 266
E PN E ILNI M + + + KD + + + PN + G +R
Sbjct: 416 ELHIEISLPNKEGRIQILNIHTKNMRQNNKLNKDVNIEELAERTPNFSGAEIEGLVRNTV 475
Query: 267 SRTYDRSI-----SKWI--DDIGGVENLGNKLLKRRKDKELPVFTPPEKTVEALLESG 317
S ++R I +K + DDI +N LK K P F E ++ LL +G
Sbjct: 476 SYAFERHINFNDLTKPVNADDIMITKNDFLNALKETK----PAFGAEEDIIDNLLSNG 529
>gi|302308716|ref|NP_985735.2| AFR188Wp [Ashbya gossypii ATCC 10895]
gi|299790761|gb|AAS53559.2| AFR188Wp [Ashbya gossypii ATCC 10895]
Length = 827
Score = 38.5 bits (88), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 80/174 (45%), Gaps = 22/174 (12%)
Query: 71 VKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTAS 130
+ P + +WG G GK+ + + + + EL ++ GE + IR+ + A
Sbjct: 554 ISAPAGVLLWGPPGCGKTLLAKAVANESRANFISIKGPELLNKYVGESERAIRQVFTRA- 612
Query: 131 QVVQNQGKMSCLM-INDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRES 189
+ + C++ +++DA + R +T ++ ++ VV TL+ D G + R
Sbjct: 613 -----RASVPCVIFFDELDALVPR-RDTSLSESSSRVVNTLLTELD-------GLNDRRG 659
Query: 190 DITNRIPIIFTGNDFSTIYAPLIRDGRMEK--FYWQPNLEDILNIVHRMYEKDG 241
I +I N I ++R GR++K F PN ++ L+I+H + + +G
Sbjct: 660 -----IFVIGATNRPDMIDPAMLRPGRLDKTLFIELPNADEKLDIMHTLVKSNG 708
>gi|374108966|gb|AEY97872.1| FAFR188Wp [Ashbya gossypii FDAG1]
Length = 827
Score = 38.5 bits (88), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 80/174 (45%), Gaps = 22/174 (12%)
Query: 71 VKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTAS 130
+ P + +WG G GK+ + + + + EL ++ GE + IR+ + A
Sbjct: 554 ISAPAGVLLWGPPGCGKTLLAKAVANESRANFISIKGPELLNKYVGESERAIRQVFTRA- 612
Query: 131 QVVQNQGKMSCLM-INDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRES 189
+ + C++ +++DA + R +T ++ ++ VV TL+ D G + R
Sbjct: 613 -----RASVPCVIFFDELDALVPR-RDTSLSESSSRVVNTLLTELD-------GLNDRRG 659
Query: 190 DITNRIPIIFTGNDFSTIYAPLIRDGRMEK--FYWQPNLEDILNIVHRMYEKDG 241
I +I N I ++R GR++K F PN ++ L+I+H + + +G
Sbjct: 660 -----IFVIGATNRPDMIDPAMLRPGRLDKTLFIELPNADEKLDIMHTLVKSNG 708
>gi|449480824|ref|XP_004156006.1| PREDICTED: LOW QUALITY PROTEIN: cell division control protein 48
homolog C-like [Cucumis sativus]
Length = 816
Score = 38.5 bits (88), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 56/236 (23%), Positives = 96/236 (40%), Gaps = 28/236 (11%)
Query: 1 MNIAVGARAGVIDPLFAGNFLGKDSDIVFDYRQKVTRSFEYLQGDYYIAPVFMASLLCHI 60
M + V V + + GN + +I+ +Q + + E ++G ++ M S+L +
Sbjct: 192 MELEVAIDDKVAEKINVGNEGNANKEILRKEKQS-SLNREEIEGPWFKDLGGMKSVLDEL 250
Query: 61 VKNYIAHLLNVKVPLILGI--------WGGKGQGKSFQTELIFQAMGIEPVIMSAGELES 112
I L + +VPL +G+ G G GK+ I G+ +SA E+ S
Sbjct: 251 KMEVIVPLYHPQVPLXVGVRPMAGILLHGPPGCGKTKLAHAIANETGVPFYKISATEIMS 310
Query: 113 ERAGEPGKLIRE----RYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVG 168
+G + IRE YRTA +V I++IDA + N Q + +IV
Sbjct: 311 GVSGASEENIRELFSKAYRTAPSIV---------FIDEIDAIASKRENLQREMEKRIVT- 360
Query: 169 TLMNLSDNPTRVSIGQDWRESDITNRIP-----IIFTGNDFSTIYAPLIRDGRMEK 219
LM D ++ +D D + + +I N + L R GR ++
Sbjct: 361 QLMTCMDGFHKLVDSKDASSKDDNSNVRPGYVLVIGATNRPDAVDPALRRPGRFDR 416
>gi|331699452|ref|YP_004335691.1| Microtubule-severing ATPase [Pseudonocardia dioxanivorans CB1190]
gi|326954141|gb|AEA27838.1| Microtubule-severing ATPase [Pseudonocardia dioxanivorans CB1190]
Length = 802
Score = 38.5 bits (88), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 83/205 (40%), Gaps = 27/205 (13%)
Query: 69 LNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRT 128
L V P + ++G G GK+F + + + + EL + GE + +RE +R
Sbjct: 568 LGVDAPRGVLLYGPPGCGKTFLLRALAGTGQLNVLSVKGAELLDKYVGESERAVRELFRK 627
Query: 129 ASQVVQNQGKMSCLMINDIDA-GLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWR 187
AS + + ++++DA R G+T V +++V L L Q R
Sbjct: 628 ASDAAP-----ALVFLDEVDALAPRRGGSTDSGVADRVVAALLTELDG-------AQPLR 675
Query: 188 ESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLE-----DILNIVHRMYE-KDG 241
E + ++ N I L+R GR+E+ + P + IL R D
Sbjct: 676 E------VVVVGATNRPELIDPALLRPGRLERLVYVPPPDAEARAAILRAAGRNTPLADD 729
Query: 242 ITKDEVGSIVKTFPNQALDFYGALR 266
+ DE+G+ + + A D LR
Sbjct: 730 VDLDELGAELDGY--SAADCAAVLR 752
>gi|390951337|ref|YP_006415096.1| AAA ATPase [Thiocystis violascens DSM 198]
gi|390427906|gb|AFL74971.1| AAA+ family ATPase [Thiocystis violascens DSM 198]
Length = 496
Score = 38.5 bits (88), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 66/148 (44%), Gaps = 24/148 (16%)
Query: 75 LILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQ 134
L+LG+ GG GKS + + G+ + + G L + GE K +R TA +
Sbjct: 268 LLLGVQGG---GKSLAAKAVAGRFGVPLLRIDFGALYDKYIGETEKNLRRALDTADLMAP 324
Query: 135 NQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNR 194
L I++I+ G+ G+ V +I+ L+ +++ TRV +
Sbjct: 325 -----CVLWIDEIEKGIAS-GSEDEGVGRRILGTLLIWMAERATRVFL------------ 366
Query: 195 IPIIFTGNDFSTIYAPLIRDGRMEKFYW 222
+ T ND S + LIR GR+++ ++
Sbjct: 367 ---VATANDISRLPPELIRKGRIDELFF 391
>gi|167382107|ref|XP_001735975.1| hypothetical protein [Entamoeba dispar SAW760]
gi|165901776|gb|EDR27788.1| hypothetical protein, conserved [Entamoeba dispar SAW760]
Length = 622
Score = 38.5 bits (88), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 52/105 (49%), Gaps = 5/105 (4%)
Query: 69 LNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRT 128
L ++ P + + G G GK+ + I +G+ + +SA EL +GE IR+ +++
Sbjct: 70 LGIEPPRGILLHGPPGCGKTLLAKAIAGEVGVAFIEVSATELVGGMSGESESKIRDLFQS 129
Query: 129 ASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNL 173
ASQ + L I++IDA + N Q + +IV L +L
Sbjct: 130 ASQRAP-----ALLFIDEIDAITPKRDNAQREMERRIVAQLLSSL 169
>gi|374386679|ref|ZP_09644177.1| ATP-dependent protease La [Odoribacter laneus YIT 12061]
gi|373223629|gb|EHP45977.1| ATP-dependent protease La [Odoribacter laneus YIT 12061]
Length = 796
Score = 38.5 bits (88), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 63/237 (26%), Positives = 106/237 (44%), Gaps = 49/237 (20%)
Query: 70 NVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGEL--ESERAGE--------PG 119
++K P IL ++G G GK+ + + +A+G E V MS G L ESE G PG
Sbjct: 370 DMKSP-ILCLYGPPGVGKTSLGKSVAKAIGREFVRMSLGGLHDESEIRGHRKTYIGAMPG 428
Query: 120 KLIRERYRTASQVVQNQGKMS-CLMINDIDAGLGRF-GNTQMTVNNQIVVGTLMNLSDNP 177
++I Q ++ G + ++++ID F G+ Q L+ + D
Sbjct: 429 RII--------QSIKKAGTSNPVFILDEIDKVGNDFRGDPQ---------SALLEVLDPE 471
Query: 178 TRVSIGQDWRESDIT-NRIPIIFTGNDFSTIYAPLIRDGRMEKF----YWQPNLEDIL-- 230
+ ++ + D +++ I T ND STI AP +RD RME Y +I
Sbjct: 472 QNTNFHDNFLDIDYDLSKVMFIATANDISTI-APPLRD-RMEIIEVSGYLLEEKREIAKR 529
Query: 231 NIVHRMYEKDGITKDEVGSIVKTFPNQALD-----FYGALRSRTYDRSISKWIDDIG 282
+++ + E G++KD V FP++ +D + R+ D+ I+K I I
Sbjct: 530 HLIPKQLENHGVSKDHV-----EFPDEIIDVIIEKYTRESGVRSLDKLIAKIIRQIA 581
>gi|425084385|ref|ZP_18487481.1| hypothetical protein HMPREF1306_05191 [Klebsiella pneumoniae subsp.
pneumoniae WGLW2]
gi|405597104|gb|EKB70402.1| hypothetical protein HMPREF1306_05191 [Klebsiella pneumoniae subsp.
pneumoniae WGLW2]
Length = 300
Score = 38.5 bits (88), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 53/228 (23%), Positives = 100/228 (43%), Gaps = 27/228 (11%)
Query: 65 IAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAM----GIEPVIM---SAGELESERAGE 117
I L++ + PL++ G G GK+ E + + G E I+ S S + GE
Sbjct: 64 ICSLVSDQYPLVI-FHGDVGTGKTATAECVANMLAKDSGAEDSILFKISNRVRGSGKVGE 122
Query: 118 PGKLIRERYRTASQVVQNQGK--MSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSD 175
G LI + + ++V+++ GK L+I++ D+ +++ V TL+ D
Sbjct: 123 MGTLINQAF---AEVIKSAGKNRRGILIIDEGDSLASSRTQEHSHHEDKVAVNTLIQCID 179
Query: 176 NPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHR 235
D R+ RI + N S + A LIR + + + +P+ + L +
Sbjct: 180 ---------DLRK--YQGRIVVFLCTNRLSVLDAALIRRAAVVEEFSRPSDAERLALFDM 228
Query: 236 MYEKDGITKDEVGSIVK-TFPNQALD--FYGALRSRTYDRSISKWIDD 280
+ G++ + G +VK T PN+ + +R+R Y +++K D
Sbjct: 229 DLQGLGLSPQQKGVLVKATGPNEGRPGWTFSDIRTRLYPAALAKAFPD 276
>gi|396081792|gb|AFN83407.1| 26S proteasome regulatory subunit 4 [Encephalitozoon romaleae
SJ-2008]
Length = 424
Score = 38.5 bits (88), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 66/153 (43%), Gaps = 19/153 (12%)
Query: 69 LNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRT 128
+ +K P + ++G G GK+ + + + + EL E GE KL+RE +R
Sbjct: 198 MGIKPPKGVILYGLPGTGKTLLAKAVANQTSATFLRVVGTELIQEYLGEGPKLVRELFRV 257
Query: 129 ASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQI--VVGTLMNLSDNPTRVSIGQDW 186
A + S + I++IDA GR NT ++ + L+N D G D
Sbjct: 258 A-----DMHAPSIIFIDEIDAIGGRRYNTSSGGRREVQRTMLELLNQLD-------GFDT 305
Query: 187 RESDITNRIPIIFTGNDFSTIYAPLIRDGRMEK 219
R N I +I N + LIR GR+++
Sbjct: 306 R-----NDIKVIMATNKIEALDPALIRPGRIDR 333
>gi|397671724|ref|YP_006513259.1| AAA ATPase [Propionibacterium propionicum F0230a]
gi|395141804|gb|AFN45911.1| ATPase, AAA family [Propionibacterium propionicum F0230a]
Length = 514
Score = 38.5 bits (88), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 70/164 (42%), Gaps = 31/164 (18%)
Query: 81 GGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMS 140
G G GKS + I G+ + + G+ +RE TA +V
Sbjct: 273 GVPGCGKSLSAKAIASQWGLPLYRLDMASVLGMYVGQSEGRLREALATAERVAP-----C 327
Query: 141 CLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQD--WRESDITNRIPII 198
L I++I+ GL + + GT TR IGQ W + ++T ++ ++
Sbjct: 328 VLWIDEIEKGLAQGSDG----------GT--------TRRLIGQFLFWMQ-ELTAKVFMV 368
Query: 199 FTGNDFSTIYAPLIRDGRMEKFYW-----QPNLEDILNIVHRMY 237
T ND ST+ L+R GR ++ ++ P+ E+I+ + R Y
Sbjct: 369 ATANDVSTLPPELLRKGRFDELFFVDLPEAPDREEIIGLYFRKY 412
>gi|401827145|ref|XP_003887665.1| 26 proteosome regulatory subunit 4 [Encephalitozoon hellem ATCC
50504]
gi|392998671|gb|AFM98684.1| 26 proteosome regulatory subunit 4 [Encephalitozoon hellem ATCC
50504]
Length = 424
Score = 38.5 bits (88), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 66/153 (43%), Gaps = 19/153 (12%)
Query: 69 LNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRT 128
+ +K P + ++G G GK+ + + + + EL E GE KL+RE +R
Sbjct: 198 MGIKPPKGVILYGLPGTGKTLLAKAVANQTSATFLRVVGTELIQEYLGEGPKLVRELFRV 257
Query: 129 ASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQI--VVGTLMNLSDNPTRVSIGQDW 186
A + S + I++IDA GR NT ++ + L+N D G D
Sbjct: 258 A-----DMHAPSIIFIDEIDAIGGRRYNTSSGGRREVQRTMLELLNQLD-------GFDT 305
Query: 187 RESDITNRIPIIFTGNDFSTIYAPLIRDGRMEK 219
R N I +I N + LIR GR+++
Sbjct: 306 R-----NDIKVIMATNKIEALDPALIRPGRIDR 333
>gi|358055257|dbj|GAA98765.1| hypothetical protein E5Q_05453 [Mixia osmundae IAM 14324]
Length = 746
Score = 38.5 bits (88), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 37/179 (20%), Positives = 75/179 (41%), Gaps = 19/179 (10%)
Query: 69 LNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRT 128
L V+ P + ++G G K+ + + + + + EL ++ GE + +RE +R
Sbjct: 509 LGVRPPRGILLYGPPGCSKTLLAKALASQAKVNFLAVKGPELFNKYVGESERAVRELFRK 568
Query: 129 ASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRE 188
A + S + +++ID G G + + ++ V+ +L+ D +
Sbjct: 569 A-----RAAQPSIIFLDEIDVIAGHRGTEEGSGSSDRVLTSLLTEMDGIEEL-------- 615
Query: 189 SDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYW--QPNLEDILNIVHRMYEKDGITKD 245
N + I+ N I A L+R GR+++ + P+ E L I + K + D
Sbjct: 616 ----NGVTILAATNRPDVIDAALMRPGRLDRILYVGPPDFEGRLAIFQSRFAKMSVAPD 670
>gi|331085585|ref|ZP_08334669.1| hypothetical protein HMPREF0987_00972 [Lachnospiraceae bacterium
9_1_43BFAA]
gi|330407472|gb|EGG86974.1| hypothetical protein HMPREF0987_00972 [Lachnospiraceae bacterium
9_1_43BFAA]
Length = 543
Score = 38.5 bits (88), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 50/106 (47%), Gaps = 7/106 (6%)
Query: 240 DGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKE 299
+G+ D IV+TFP L+F LR + ++ G V +G KL ++K +
Sbjct: 388 EGMISDFEQKIVETFPKMELEF-AVLREGKKMSELKSSVETCGKVMKMGKKLCPKKKIWD 446
Query: 300 LPVFTP------PEKTVEALLESGYSLLREQQLIMETKLSKEYMKN 339
+ P PEK +E +L ++++++ + + K Y++N
Sbjct: 447 YEMIGPFAWLQIPEKELEQMLSEYLDMMKDEKNVELLRTLKVYLEN 492
>gi|303390097|ref|XP_003073280.1| 26S proteasome regulatory subunit 4 [Encephalitozoon intestinalis
ATCC 50506]
gi|303302425|gb|ADM11920.1| 26S proteasome regulatory subunit 4 [Encephalitozoon intestinalis
ATCC 50506]
Length = 424
Score = 38.5 bits (88), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 66/153 (43%), Gaps = 19/153 (12%)
Query: 69 LNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRT 128
+ +K P + ++G G GK+ + + + + EL E GE KL+RE +R
Sbjct: 198 MGIKPPKGVILYGLPGTGKTLLAKAVANQTSATFLRVVGTELIQEYLGEGPKLVRELFRV 257
Query: 129 ASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQI--VVGTLMNLSDNPTRVSIGQDW 186
A + S + I++IDA GR NT ++ + L+N D G D
Sbjct: 258 A-----DMHAPSIIFIDEIDAIGGRRYNTSSGGRREVQRTMLELLNQLD-------GFDT 305
Query: 187 RESDITNRIPIIFTGNDFSTIYAPLIRDGRMEK 219
R N I +I N + LIR GR+++
Sbjct: 306 R-----NDIKVIMATNKIEALDPALIRPGRIDR 333
>gi|91069869|gb|ABE10800.1| AAA ATPase superfamily [uncultured Prochlorococcus marinus clone
ASNC1363]
Length = 488
Score = 38.1 bits (87), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 34/162 (20%), Positives = 69/162 (42%), Gaps = 24/162 (14%)
Query: 81 GGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMS 140
G +G GKS + I ++ + + + G L S G RT +++ +
Sbjct: 267 GAQGTGKSLTAKSISKSWSMPLLRLDVGRLFSSLVGSS------EARTREAILRAEAMSP 320
Query: 141 CLM-INDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIF 199
C++ I++ID G G + + +++ L +++ + V + I
Sbjct: 321 CILWIDEIDKGFGGDARSDGGTSQRVLASLLTWMAEKESAVFV---------------IA 365
Query: 200 TGNDFSTIYAPLIRDGRMEKFYW--QPNLEDILNIVHRMYEK 239
T N + A L+R GR ++ ++ PN E+ L+I+ +K
Sbjct: 366 TANAIDKLPAELLRKGRFDEIFFLDLPNSEERLSILELHLKK 407
>gi|344345580|ref|ZP_08776427.1| AAA ATPase central domain protein [Marichromatium purpuratum 984]
gi|343802848|gb|EGV20767.1| AAA ATPase central domain protein [Marichromatium purpuratum 984]
Length = 506
Score = 38.1 bits (87), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 68/148 (45%), Gaps = 24/148 (16%)
Query: 75 LILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQ 134
L+LG+ GG GKS + + G+ + + L + GE K +R+ RTA +
Sbjct: 277 LLLGVQGG---GKSLAAKAVAGRFGVALLRLDFATLYDKYIGETEKNLRQALRTAEVMAP 333
Query: 135 NQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNR 194
L I++I+ GL G+ V + V+GTL+ W ++ R
Sbjct: 334 -----CVLWIDEIEKGLAS-GSGDDGVGRR-VLGTLLT-------------WM-AERRAR 372
Query: 195 IPIIFTGNDFSTIYAPLIRDGRMEKFYW 222
+ ++ T ND S + L+R GR+++ ++
Sbjct: 373 VFLVATANDVSRLPPELLRKGRIDELFF 400
>gi|344338327|ref|ZP_08769259.1| AAA ATPase central domain protein [Thiocapsa marina 5811]
gi|343801609|gb|EGV19551.1| AAA ATPase central domain protein [Thiocapsa marina 5811]
Length = 534
Score = 38.1 bits (87), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 91/210 (43%), Gaps = 41/210 (19%)
Query: 19 NFLGKDSDIVFDYRQKVTRSFEYLQGDYYIAPVFMASLLCHIVKNYIAHLL------NVK 72
+ LG +S I F+Y TRSF + G + +L I + A L + +
Sbjct: 220 DLLGPESAISFEYD---TRSFAEVAG--------LGNLKAWIDRRRDAFLDPDRKADHPR 268
Query: 73 VPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQV 132
L+LG+ GG GKS + + G+ + + G L + GE K +R+ TA +
Sbjct: 269 GVLLLGVQGG---GKSLAAKAVAGRFGVPLLRLDFGALYDKYIGETEKNLRKALATADVM 325
Query: 133 VQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDIT 192
L I++I+ G+ G V + V+GTL+ W ++
Sbjct: 326 -----SPCVLWIDEIEKGVA-TGAEDDGVGRR-VLGTLLT-------------WM-AERN 364
Query: 193 NRIPIIFTGNDFSTIYAPLIRDGRMEKFYW 222
+R+ + T ND S + LIR GR+++ ++
Sbjct: 365 SRVFLTATANDISRLPPELIRKGRIDELFF 394
>gi|383830124|ref|ZP_09985213.1| AAA+ family ATPase [Saccharomonospora xinjiangensis XJ-54]
gi|383462777|gb|EID54867.1| AAA+ family ATPase [Saccharomonospora xinjiangensis XJ-54]
Length = 747
Score = 38.1 bits (87), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 68/160 (42%), Gaps = 25/160 (15%)
Query: 69 LNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRT 128
L V P + I+G G GK+F + + + EL + GE + +RE +R
Sbjct: 516 LGVAPPRGVLIYGPPGNGKTFLVRALAGTGALNVFSVKGAELMDKWVGESERAVRELFRK 575
Query: 129 ASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSD--NPTR--VSIGQ 184
A++ S + ++++DA + R G + + + VV L+ D P R V +G
Sbjct: 576 AAEAAP-----SLIFLDEVDALVPRRGQSSDSGASDRVVAALLTELDGVEPLRDVVVVGA 630
Query: 185 DWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQP 224
TNR ++ L+R GR+E+ + P
Sbjct: 631 -------TNRPELVDPA---------LLRPGRLERLIYVP 654
>gi|440299581|gb|ELP92133.1| atpase AAA family protein, partial [Entamoeba invadens IP1]
Length = 590
Score = 38.1 bits (87), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 74/169 (43%), Gaps = 19/169 (11%)
Query: 79 IWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGK 138
+ G G GK+ E I +G+ + +SA EL +GE + IR+ + A+++
Sbjct: 50 LHGPPGCGKTLLAEAIAGEVGVPFIEVSATELVGGVSGESEQKIRDLFDDAAKLAP---- 105
Query: 139 MSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPII 198
S L I++ID+ + + N+Q + +IV L ++ + S + +I
Sbjct: 106 -SLLFIDEIDSIVQKRDNSQREMEKRIVAQLLSSMD------------KLSTADKPVMVI 152
Query: 199 FTGNDFSTIYAPLIRDGRMEK--FYWQPNLEDILNIVHRMYEKDGITKD 245
N ++ L R GR +K P+ E IV +M E I +D
Sbjct: 153 GATNRPDSLDPALRRAGRFDKEIALGIPSEEQRRQIVTKMIENLKIAED 201
>gi|345872617|ref|ZP_08824548.1| AAA ATPase central domain protein [Thiorhodococcus drewsii AZ1]
gi|343918280|gb|EGV29046.1| AAA ATPase central domain protein [Thiorhodococcus drewsii AZ1]
Length = 504
Score = 38.1 bits (87), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 69/148 (46%), Gaps = 24/148 (16%)
Query: 75 LILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQ 134
L+LG+ GG GKS + + +G+ + + G L + GE K +R+ TA +
Sbjct: 268 LLLGVQGG---GKSLAAKAVAGRLGVPLLRLDFGALYDKYIGETEKNLRKALETADLM-- 322
Query: 135 NQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNR 194
L I++I+ G+ G+ V + V+GTL+ W ++ +R
Sbjct: 323 ---SPCVLWIDEIEKGIA-TGSEDEGVGRR-VLGTLLT-------------WM-AERKSR 363
Query: 195 IPIIFTGNDFSTIYAPLIRDGRMEKFYW 222
+ + T ND S + LIR GR+++ ++
Sbjct: 364 VFLAATANDISRLPPELIRKGRIDELFF 391
>gi|219117433|ref|XP_002179511.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217409402|gb|EEC49334.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 389
Score = 38.1 bits (87), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 33/168 (19%), Positives = 72/168 (42%), Gaps = 19/168 (11%)
Query: 60 IVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPG 119
++++++ + + P + ++G G GK+ + + A + M E + GE
Sbjct: 155 LLQHHLYQQIGIDPPRGVLLYGPPGTGKTMMAKAVANATKATFISMVGSEFVQKYLGEGP 214
Query: 120 KLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQI--VVGTLMNLSDNP 177
+++R+ +R A + + I++IDA + + Q + ++ ++ L+N D
Sbjct: 215 RMVRDVFRLA-----RENSPCIVFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDG- 268
Query: 178 TRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPN 225
D T I +I N T+ L+R GR+++ PN
Sbjct: 269 -----------FDQTTNIKVIMATNRADTLDPALLRPGRLDRKIEFPN 305
>gi|2127780|pir||E64486 ATP-dependent 26S proteosome regulatory subunit 8 homolog -
Methanococcus jannaschii
Length = 373
Score = 38.1 bits (87), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 47/100 (47%), Gaps = 10/100 (10%)
Query: 58 CHIVKNYIAH--LLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERA 115
C I+ Y+ + L P + +G G GK+ + +++ A EL E
Sbjct: 138 CRIIMKYLENPKLFGEWAPKNVLFYGPPGTGKTLMARALATETNSSFILVKAPELIGEHV 197
Query: 116 GEPGKLIRERYRTASQVVQNQGKMSCLM-INDIDA-GLGR 153
G+ K+IRE Y+ AS+ C++ I+++DA GL R
Sbjct: 198 GDASKMIRELYQRASESA------PCIVFIDELDAIGLSR 231
>gi|431931291|ref|YP_007244337.1| AAA ATPase [Thioflavicoccus mobilis 8321]
gi|431829594|gb|AGA90707.1| AAA+ family ATPase [Thioflavicoccus mobilis 8321]
Length = 508
Score = 38.1 bits (87), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 63/148 (42%), Gaps = 24/148 (16%)
Query: 75 LILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQ 134
++LG+ GG GKS + + +GI + + G L + GE K +R +TA +
Sbjct: 267 MLLGVQGG---GKSLAAKAVAGQLGIPLLRLDFGALYDKYYGETEKNLRRALQTADLMAP 323
Query: 135 NQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNR 194
L +++I+ GL G+ V+GTL+ P +
Sbjct: 324 -----CVLWMDEIEKGLATGGDHDGLARR--VLGTLLTWMAEPRSAAF------------ 364
Query: 195 IPIIFTGNDFSTIYAPLIRDGRMEKFYW 222
I+ T N + A L+R GR+++ ++
Sbjct: 365 --IVATSNHIQRLPAELVRKGRLDEIFF 390
>gi|418461396|ref|ZP_13032471.1| AAA+ family ATPase [Saccharomonospora azurea SZMC 14600]
gi|359738499|gb|EHK87384.1| AAA+ family ATPase [Saccharomonospora azurea SZMC 14600]
Length = 741
Score = 38.1 bits (87), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 67/160 (41%), Gaps = 25/160 (15%)
Query: 69 LNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRT 128
L V P + I+G G GK+F + + + EL + GE + +RE +R
Sbjct: 510 LGVAPPRGVLIYGPPGNGKTFLVRALAGTGALNVFSVKGAELMDKWVGESERAVRELFRR 569
Query: 129 ASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSD--NPTR--VSIGQ 184
A++ S + ++++DA R G + + + VV L+ D P R V +G
Sbjct: 570 AAEAAP-----SLIFLDEVDALAPRRGQSSDSGASDRVVAALLTELDGVEPLRDVVVVGA 624
Query: 185 DWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQP 224
TNR ++ L+R GR+E+ + P
Sbjct: 625 -------TNRPELVDPA---------LLRPGRLERLVYVP 648
>gi|15669688|ref|NP_248501.1| AAA ATPase [Methanocaldococcus jannaschii DSM 2661]
gi|3915816|sp|Q58889.2|PRS2_METJA RecName: Full=Putative 26S protease regulatory subunit homolog
MJ1494
gi|2826420|gb|AAB99505.1| AAA superfamily ATPase, similar to FtsH [Methanocaldococcus
jannaschii DSM 2661]
Length = 371
Score = 38.1 bits (87), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 47/100 (47%), Gaps = 10/100 (10%)
Query: 58 CHIVKNYIAH--LLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERA 115
C I+ Y+ + L P + +G G GK+ + +++ A EL E
Sbjct: 136 CRIIMKYLENPKLFGEWAPKNVLFYGPPGTGKTLMARALATETNSSFILVKAPELIGEHV 195
Query: 116 GEPGKLIRERYRTASQVVQNQGKMSCLM-INDIDA-GLGR 153
G+ K+IRE Y+ AS+ C++ I+++DA GL R
Sbjct: 196 GDASKMIRELYQRASE------SAPCIVFIDELDAIGLSR 229
>gi|289191993|ref|YP_003457934.1| AAA ATPase central domain protein [Methanocaldococcus sp. FS406-22]
gi|288938443|gb|ADC69198.1| AAA ATPase central domain protein [Methanocaldococcus sp. FS406-22]
Length = 371
Score = 38.1 bits (87), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 47/100 (47%), Gaps = 10/100 (10%)
Query: 58 CHIVKNYIAH--LLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERA 115
C I+ Y+ + L P + +G G GK+ + +++ A EL E
Sbjct: 136 CRIIMKYLENPKLFGEWAPKNVLFYGPPGTGKTLMARALATETNSSFILVKAPELIGEHV 195
Query: 116 GEPGKLIRERYRTASQVVQNQGKMSCLM-INDIDA-GLGR 153
G+ K+IRE Y+ AS+ C++ I+++DA GL R
Sbjct: 196 GDASKMIRELYQRASE------NAPCIVFIDELDAIGLSR 229
>gi|256810841|ref|YP_003128210.1| AAA ATPase [Methanocaldococcus fervens AG86]
gi|256794041|gb|ACV24710.1| AAA ATPase central domain protein [Methanocaldococcus fervens AG86]
Length = 371
Score = 38.1 bits (87), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 47/100 (47%), Gaps = 10/100 (10%)
Query: 58 CHIVKNYIAH--LLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERA 115
C I+ Y+ + L P + +G G GK+ + +++ A EL E
Sbjct: 136 CRIIMKYLENPKLFGEWAPKNVLFYGPPGTGKTLMARALATETNSSFILVKAPELIGEHV 195
Query: 116 GEPGKLIRERYRTASQVVQNQGKMSCLM-INDIDA-GLGR 153
G+ K+IRE Y+ AS+ C++ I+++DA GL R
Sbjct: 196 GDASKMIRELYQRASE------SAPCIVFIDELDAIGLSR 229
>gi|381163299|ref|ZP_09872529.1| AAA+ family ATPase [Saccharomonospora azurea NA-128]
gi|379255204|gb|EHY89130.1| AAA+ family ATPase [Saccharomonospora azurea NA-128]
Length = 767
Score = 38.1 bits (87), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 67/160 (41%), Gaps = 25/160 (15%)
Query: 69 LNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRT 128
L V P + I+G G GK+F + + + EL + GE + +RE +R
Sbjct: 536 LGVAPPRGVLIYGPPGNGKTFLVRALAGTGALNVFSVKGAELMDKWVGESERAVRELFRR 595
Query: 129 ASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSD--NPTR--VSIGQ 184
A++ S + ++++DA R G + + + VV L+ D P R V +G
Sbjct: 596 AAEAAP-----SLIFLDEVDALAPRRGQSSDSGASDRVVAALLTELDGVEPLRDVVVVGA 650
Query: 185 DWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQP 224
TNR ++ L+R GR+E+ + P
Sbjct: 651 -------TNRPELVDPA---------LLRPGRLERLVYVP 674
>gi|320590385|gb|EFX02828.1| aaa family ATPase [Grosmannia clavigera kw1407]
Length = 752
Score = 38.1 bits (87), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 33/151 (21%), Positives = 65/151 (43%), Gaps = 23/151 (15%)
Query: 79 IWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGK 138
++G G K+ + + G+ + GEL ++ GE + IRE + A +
Sbjct: 518 LYGPPGCSKTMTAQALATESGLNYFSVKGGELLNQYVGESERGIRELFERAKRAAP---- 573
Query: 139 MSCLMINDIDAGLGR---FGNTQMTVNN--QIVVGTLMNLSDNPTRVSIGQDWRESDITN 193
+ + +++IDA GR FG+ + N Q+V L L T +
Sbjct: 574 -AVIFLDEIDAVAGRRSDFGDKSASSNRGPQVVPALLSELDGFET-------------LS 619
Query: 194 RIPIIFTGNDFSTIYAPLIRDGRMEKFYWQP 224
++ ++ N ++ L+R GR+E+ ++ P
Sbjct: 620 KVFVVAATNRPESLDPALLRPGRLERHFYVP 650
>gi|82596078|ref|XP_726114.1| ATPase, AAA family [Plasmodium yoelii yoelii 17XNL]
gi|23481383|gb|EAA17679.1| ATPase, AAA family, putative [Plasmodium yoelii yoelii]
Length = 776
Score = 37.7 bits (86), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 74/292 (25%), Positives = 121/292 (41%), Gaps = 42/292 (14%)
Query: 51 VFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGI-EPVIMSAGE 109
+F + I NYI L +K + ++G G GK+ I + + EP I++ E
Sbjct: 255 IFRRTFASRIYPNYIIKQLGIKHVKGMILYGPPGTGKTLIARQIGKTLNAREPKIINGPE 314
Query: 110 LESERAGEPGKLIRERYRTASQVVQNQGKMSCLMI---NDIDAGLGRFGNTQMT---VNN 163
+ ++ G+ + IR ++ A + G+ S L I ++IDA + G+ T VN+
Sbjct: 315 ILNKYVGQSEENIRNLFKDAELEYKQSGENSLLHIIILDEIDAICRQRGSGASTGSGVND 374
Query: 164 QIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKF--Y 221
I V L++ D + N I +I N I L+R GR E
Sbjct: 375 SI-VNQLLSKIDGVNSL------------NNILLIGMTNRIDLIDEALLRPGRFELHIEI 421
Query: 222 WQPNLE---DILNI-VHRMYEKDGITKD-EVGSIVKTFPN-QALDFYGALR---SRTYDR 272
PN E ILNI M + + ++ D + + + PN + G +R S ++R
Sbjct: 422 SLPNKEGRIQILNIHTKNMRQNNKLSADVNIEELAERTPNFSGAEIEGLVRNTVSYAFER 481
Query: 273 SIS-------KWIDDIGGVENLGNKLLKRRKDKELPVFTPPEKTVEALLESG 317
I+ +DDI +N LK K P F E ++ LL +G
Sbjct: 482 HINFNDLTKPINVDDIMISKNDFLNALKETK----PAFGAEEDIIDNLLSNG 529
>gi|161528731|ref|YP_001582557.1| ATPase AAA [Nitrosopumilus maritimus SCM1]
gi|160340032|gb|ABX13119.1| AAA family ATPase, CDC48 subfamily [Nitrosopumilus maritimus SCM1]
Length = 721
Score = 37.7 bits (86), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 74/179 (41%), Gaps = 22/179 (12%)
Query: 69 LNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRT 128
+ +K P I+G G GK+ + G +++ E+ S+ GE K +RE +R
Sbjct: 481 MGIKPPKGALIYGPPGCGKTLLGRALATETGANMILVRGPEILSKWVGESEKAVREIFRK 540
Query: 129 ASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRE 188
A + C++I D L R + + V I+ L + D
Sbjct: 541 A------KASSPCVVIFDELDSLARSKSGEGGVGENILSQLLTEIEDG------------ 582
Query: 189 SDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYW--QPNLEDILNIVHRMYEKDGITKD 245
+++R+ +I N + L+R GR++ + P+ + L I+ + +K +T D
Sbjct: 583 --VSSRVVVIGITNRPDVVDNSLLRTGRLDLVLYVEPPDEKGRLEIIKILTKKMPLTSD 639
>gi|48477528|ref|YP_023234.1| cell division cycle protein 48 [Picrophilus torridus DSM 9790]
gi|48430176|gb|AAT43041.1| cell division cycle protein 48 [Picrophilus torridus DSM 9790]
Length = 744
Score = 37.7 bits (86), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 34/156 (21%), Positives = 65/156 (41%), Gaps = 17/156 (10%)
Query: 69 LNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRT 128
L ++ P ++G G GK+ + + + + E+ S+ GE K +RE ++
Sbjct: 495 LGIRAPKGFLLYGPPGTGKTLLAKAVANESNANFISIKGPEVLSKWVGESEKAVREIFKK 554
Query: 129 ASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRE 188
A QV S + +++ID+ R G + + + +V L+ D
Sbjct: 555 AKQVAP-----SIVFLDEIDSIAPRRGASMDSGVTERIVNQLLTSLDG------------ 597
Query: 189 SDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQP 224
++ N + +I N I L+R GR +K + P
Sbjct: 598 IEVLNGVVVIAATNRPDIIDPALLRAGRFDKIMYIP 633
>gi|312381272|gb|EFR27057.1| hypothetical protein AND_06456 [Anopheles darlingi]
Length = 848
Score = 37.7 bits (86), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 70/163 (42%), Gaps = 13/163 (7%)
Query: 17 AGNFLGKDSDIVFDYRQKV-----TRSFEYLQG-DYYIAPVFMASLLCHIVKNYIAHLLN 70
+GN D YR++V + +FE + G D + + LL H+ I +
Sbjct: 253 SGNNQTGDRGKTKKYRKEVASRVVSTTFEDVGGMDRVLK--HLCELLLHVKHPEIYRHIG 310
Query: 71 VKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTAS 130
+ P + G G GK+ + I + IE + + A EL + +GE + IRE + A+
Sbjct: 311 LPPPRGFLLHGPPGSGKTLLAQAIAGQLKIELIEVPATELVASLSGESEERIREVFEQAA 370
Query: 131 QVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNL 173
+ L I++IDA N Q + +IV L +L
Sbjct: 371 SMAP-----CVLFIDEIDAISSNRINAQKDMERRIVSQLLNSL 408
>gi|225709404|gb|ACO10548.1| 26S protease regulatory subunit 4 [Caligus rogercresseyi]
Length = 440
Score = 37.7 bits (86), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 81/187 (43%), Gaps = 25/187 (13%)
Query: 69 LNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRT 128
+ +K P + ++G G GK+ T+ + + + EL + G+ KL+RE +R
Sbjct: 214 MGIKPPKGVILYGAPGTGKTLLTKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRV 273
Query: 129 ASQVVQNQGKMSCLMINDIDA-GLGRF-GNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDW 186
A + S + I++IDA G R+ N+ Q + L+N D G D
Sbjct: 274 AEEHAP-----SIVFIDEIDAIGTKRYDSNSGGEREIQRTLLELLNQLD-------GFDS 321
Query: 187 RESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLED-----ILNI-VHRMYEKD 240
R + +I N T+ LIR GR+++ P ++ I NI RM D
Sbjct: 322 R-----GDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTVAD 376
Query: 241 GITKDEV 247
+T D++
Sbjct: 377 DVTLDDL 383
>gi|255727749|ref|XP_002548800.1| protein AFG2 [Candida tropicalis MYA-3404]
gi|240133116|gb|EER32672.1| protein AFG2 [Candida tropicalis MYA-3404]
Length = 770
Score = 37.7 bits (86), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 41/183 (22%), Positives = 78/183 (42%), Gaps = 21/183 (11%)
Query: 69 LNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRT 128
L V P + ++G G K+ + + G+ + + E+ ++ GE + IRE +R
Sbjct: 534 LGVSSPKGVLLYGPPGCSKTLTAKALATESGLNFLAVKGPEIFNKYVGESERTIREIFRK 593
Query: 129 ASQVVQNQGKMSCLMINDIDAGLG-RFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWR 187
A S + ++IDA G R G++ T + ++ +L+N D +
Sbjct: 594 A-----RAASPSIIFFDEIDAIAGDRDGDSSTTAASNVLT-SLLNEIDGVEEL------- 640
Query: 188 ESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYW--QPNLEDILNIVHRMYEKDGITKD 245
+ I+ N + I L+R GR+++ + P+ E L I+ + + KD
Sbjct: 641 -----KGVVIVGATNKPTEIDPALLRPGRLDRHIYVAPPDYEARLQILQKCTRNFNLDKD 695
Query: 246 EVG 248
EV
Sbjct: 696 EVA 698
>gi|407034780|gb|EKE37391.1| ATPase, AAA family protein [Entamoeba nuttalli P19]
Length = 622
Score = 37.4 bits (85), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 5/105 (4%)
Query: 69 LNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRT 128
L ++ P + + G G GK+ + I +G+ + +SA EL +GE IR+ ++
Sbjct: 70 LGIEPPRGILLHGPPGCGKTLLAKAIAGEVGVAFIEVSATELVGGMSGESESKIRDLFQL 129
Query: 129 ASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNL 173
ASQ + L I++IDA + N Q + +IV L +L
Sbjct: 130 ASQRAP-----ALLFIDEIDAITPKRDNAQREMERRIVAQLLSSL 169
>gi|167525423|ref|XP_001747046.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163774341|gb|EDQ87970.1| predicted protein [Monosiga brevicollis MX1]
Length = 508
Score = 37.4 bits (85), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 65/144 (45%), Gaps = 15/144 (10%)
Query: 79 IWGGKGQGKSFQTELIFQAM-GIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQG 137
++G G GK+ I Q + G EP I++ E+ S+ GE IR + A + +G
Sbjct: 56 LYGPPGTGKTLMARKIGQMLEGREPKIVNGPEVLSKYVGEAEANIRALFEDAETEYKQKG 115
Query: 138 KMSCLMI---NDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNR 194
+MS L I ++IDA T+ TVNN GT +N S +S D N
Sbjct: 116 EMSSLHIIIFDEIDA----ICKTRGTVNN----GTGVNDSIVNQLLS---KIDGVDSLNN 164
Query: 195 IPIIFTGNDFSTIYAPLIRDGRME 218
I +I N I L R GR+E
Sbjct: 165 ILLIGMTNRPDMIDDALTRPGRLE 188
>gi|67469139|ref|XP_650561.1| ATPase, AAA family protein [Entamoeba histolytica HM-1:IMSS]
gi|56467200|gb|EAL45175.1| ATPase, AAA family protein [Entamoeba histolytica HM-1:IMSS]
gi|449708369|gb|EMD47845.1| atpase AAA family protein [Entamoeba histolytica KU27]
Length = 622
Score = 37.4 bits (85), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 5/105 (4%)
Query: 69 LNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRT 128
L ++ P + + G G GK+ + I +G+ + +SA EL +GE IR+ ++
Sbjct: 70 LGIEPPRGILLHGPPGCGKTLLAKAIAGEVGVAFIEVSATELVGGMSGESESKIRDLFQL 129
Query: 129 ASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNL 173
ASQ + L I++IDA + N Q + +IV L +L
Sbjct: 130 ASQRAP-----ALLFIDEIDAITPKRDNAQREMERRIVAQLLSSL 169
>gi|361131042|gb|EHL02772.1| putative 26S protease regulatory subunit 6B like protein [Glarea
lozoyensis 74030]
Length = 269
Score = 37.4 bits (85), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 32/152 (21%), Positives = 66/152 (43%), Gaps = 19/152 (12%)
Query: 79 IWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGK 138
++G G GK+ + + + + + E + GE +++R+ +R A +
Sbjct: 52 LYGPPGTGKTMLVKAVANSTTASFIRVVGSEFVQKYLGEGPRMVRDVFRMA-----RENS 106
Query: 139 MSCLMINDIDAGLGRFGNTQMTVNNQI--VVGTLMNLSDNPTRVSIGQDWRESDITNRIP 196
S + I++IDA + + Q + ++ ++ L+N D D T+ +
Sbjct: 107 PSIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDG------------FDQTSNVK 154
Query: 197 IIFTGNDFSTIYAPLIRDGRMEKFYWQPNLED 228
+I N T+ L+R GR+++ PNL D
Sbjct: 155 VIMATNRADTLDPALLRPGRLDRKIEFPNLRD 186
>gi|375102754|ref|ZP_09749017.1| AAA+ family ATPase [Saccharomonospora cyanea NA-134]
gi|374663486|gb|EHR63364.1| AAA+ family ATPase [Saccharomonospora cyanea NA-134]
Length = 747
Score = 37.4 bits (85), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 67/160 (41%), Gaps = 25/160 (15%)
Query: 69 LNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRT 128
L V P + I+G G GK+F + + + EL + GE + +RE +R
Sbjct: 516 LGVAPPRGVLIYGPPGNGKTFLVRALAGTGALNVFSVKGAELLDKWVGESERAVRELFRR 575
Query: 129 ASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSD--NPTR--VSIGQ 184
A++ S + ++++DA R G + + + VV L+ D P R V +G
Sbjct: 576 AAEAAP-----SLIFLDEVDALAPRRGQSSDSGASDRVVAALLTELDGVEPMRDVVVVGA 630
Query: 185 DWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQP 224
TNR ++ L+R GR+E+ + P
Sbjct: 631 -------TNRPELVDPA---------LLRPGRLERLIYVP 654
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.320 0.139 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,447,792,214
Number of Sequences: 23463169
Number of extensions: 238529371
Number of successful extensions: 572385
Number of sequences better than 100.0: 433
Number of HSP's better than 100.0 without gapping: 278
Number of HSP's successfully gapped in prelim test: 155
Number of HSP's that attempted gapping in prelim test: 570941
Number of HSP's gapped (non-prelim): 486
length of query: 342
length of database: 8,064,228,071
effective HSP length: 143
effective length of query: 199
effective length of database: 9,003,962,200
effective search space: 1791788477800
effective search space used: 1791788477800
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 77 (34.3 bits)