BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019334
(342 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3T15|A Chain A, Structure Of Green-Type Rubisco Activase From Tobacco
pdb|3ZW6|A Chain A, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|B Chain B, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|C Chain C, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|D Chain D, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|E Chain E, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|F Chain F, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco
Length = 293
Score = 313 bits (803), Expect = 7e-86, Method: Compositional matrix adjust.
Identities = 155/289 (53%), Positives = 205/289 (70%), Gaps = 7/289 (2%)
Query: 46 YYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIM 105
+YIAP FM L+ HI KN++ L N+KVPLILGIWGGKGQGKSFQ EL+F+ MGI P++M
Sbjct: 9 FYIAPAFMDKLVVHITKNFL-KLPNIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMM 67
Query: 106 SAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQ 164
SAGELES AGEP KLIR+RYR A+++++ +G M CL IND+DAG GR G TQ TVNNQ
Sbjct: 68 SAGELESGNAGEPAKLIRQRYREAAEIIR-KGNMCCLFINDLDAGAGRMGGTTQYTVNNQ 126
Query: 165 IVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQP 224
+V TLMN++DNPT V + + + + R+PII TGNDFST+YAPLIRDGRMEKFYW P
Sbjct: 127 MVNATLMNIADNPTNVQLPGMYNKQE-NARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 185
Query: 225 NLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGV 284
ED + + ++ D + ++V IV FP Q++DF+GALR+R YD + KW+ G+
Sbjct: 186 TREDRIGVCTGIFRTDNVPAEDVVKIVDNFPGQSIDFFGALRARVYDDEVRKWVSGT-GI 244
Query: 285 ENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLS 333
E +G+KLL P F P+ T+E LLE G L++EQ+ + +L+
Sbjct: 245 EKIGDKLLNSFDGP--PTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLA 291
>pdb|3THG|A Chain A, Crystal Structure Of The Creosote Rubisco Activase
C-Domain
Length = 107
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 62/99 (62%), Gaps = 3/99 (3%)
Query: 227 EDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVEN 286
ED + + ++ D + D++ +V TFP Q++DF+GALR+R YD + KW+ ++ GV+
Sbjct: 8 EDRIGVCKGIFRTDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWVSEV-GVDT 66
Query: 287 LGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQ 325
+G KL+ ++ P F P+ T++ LL G L++EQ+
Sbjct: 67 IGKKLVNSKEGP--PSFEQPKMTIDKLLGYGGMLVQEQE 103
>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 467
Score = 31.2 bits (69), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 80/175 (45%), Gaps = 22/175 (12%)
Query: 69 LNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRT 128
L + P + ++G G GK+ + + + EL + GE +++RE +
Sbjct: 238 LGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRELFEM 297
Query: 129 ASQVVQNQGKMSCLM-INDIDA-GLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDW 186
A + K +C++ ++IDA G RF + N V T++ L T++ G D
Sbjct: 298 A------RTKKACIIFFDEIDAVGGARFDDGAGGDNE--VQRTMLELI---TQLD-GFDP 345
Query: 187 RESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKF--YWQPNLEDILNIVHRMYEK 239
R I ++F N +T+ L+R GR+++ + P+LE NI R++ K
Sbjct: 346 R-----GNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANI-FRIHSK 394
>pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer
Length = 331
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 46/96 (47%), Gaps = 5/96 (5%)
Query: 79 IWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGK 138
++G G GKS+ + + +S+ +L S+ GE KL+++ + A + K
Sbjct: 65 LYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMA-----RENK 119
Query: 139 MSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLS 174
S + I+++DA G G + + +I L+ ++
Sbjct: 120 PSIIFIDEVDALTGTRGEGESEASRRIKTELLVQMN 155
>pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound
State
Length = 322
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 45/96 (46%), Gaps = 5/96 (5%)
Query: 79 IWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGK 138
++G G GKS+ + + +S+ +L S+ GE KL+++ + A + K
Sbjct: 56 LYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMA-----RENK 110
Query: 139 MSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLS 174
S + I+ +DA G G + + +I L+ ++
Sbjct: 111 PSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMN 146
>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 32/156 (20%), Positives = 67/156 (42%), Gaps = 17/156 (10%)
Query: 65 IAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRE 124
I + +K P + ++G G GK+ + + +G + A + + GE ++IRE
Sbjct: 206 IFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIRE 265
Query: 125 RYRTASQVVQNQGKMSCLM-INDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIG 183
+ A + C++ ++++DA GR + + + +I + L+ ++G
Sbjct: 266 MFAYAKE------HEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLG 319
Query: 184 QDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEK 219
Q II N T+ L+R GR+++
Sbjct: 320 Q----------TKIIMATNRPDTLDPALLRPGRLDR 345
>pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
Length = 340
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 45/96 (46%), Gaps = 5/96 (5%)
Query: 79 IWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGK 138
++G G GKS+ + + +S+ +L S+ GE KL+++ + A + K
Sbjct: 74 LYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMA-----RENK 128
Query: 139 MSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLS 174
S + I+ +DA G G + + +I L+ ++
Sbjct: 129 PSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMN 164
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 27/152 (17%), Positives = 65/152 (42%), Gaps = 19/152 (12%)
Query: 79 IWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGK 138
++G G GK+ + + + + ++ E + GE +++R+ +R A +
Sbjct: 211 LYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLGEGPRMVRDVFRLA-----RENA 265
Query: 139 MSCLMINDIDAGLGRFGNTQMTVNNQI--VVGTLMNLSDNPTRVSIGQDWRESDITNRIP 196
S + I+++D+ + + Q + ++ ++ L+ D D + +
Sbjct: 266 PSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDG------------FDQSTNVK 313
Query: 197 IIFTGNDFSTIYAPLIRDGRMEKFYWQPNLED 228
+I N T+ L+R GR+++ P+L D
Sbjct: 314 VIMATNRADTLDPALLRPGRLDRKIEFPSLRD 345
>pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 69/162 (42%), Gaps = 21/162 (12%)
Query: 69 LNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRT 128
+ +K P + ++G G GK+ + + + + EL + G+ +L R+ ++
Sbjct: 211 MGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPRLCRQIFKV 270
Query: 129 ASQVVQNQGKMSCLMINDIDA-GLGRF-GNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDW 186
A + S + I++IDA G R+ N+ Q + L+N D G D
Sbjct: 271 A-----GENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLD-------GFDD 318
Query: 187 RESDITNRIPIIFTGNDFSTIYAPLIRDGRMEK--FYWQPNL 226
R + +I N T+ LIR GR+++ + P+L
Sbjct: 319 R-----GDVKVIMATNKIETLDPALIRPGRIDRKILFENPDL 355
>pdb|1TEV|A Chain A, Crystal Structure Of The Human UmpCMP KINASE IN OPEN
Conformation
Length = 196
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 7/64 (10%)
Query: 74 PLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEP----GKLIRERYRTA 129
PL++ + GG G GK Q I + G +SAGEL + P G+LI E+Y
Sbjct: 3 PLVVFVLGGPGAGKGTQCARIVEKYGY--THLSAGELLRDERKNPDSQYGELI-EKYIKE 59
Query: 130 SQVV 133
++V
Sbjct: 60 GKIV 63
>pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4
pdb|2QPA|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
Length = 355
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 45/96 (46%), Gaps = 5/96 (5%)
Query: 79 IWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGK 138
++G G GKS+ + + +S+ +L S+ GE KL+++ + A + K
Sbjct: 89 LYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMA-----RENK 143
Query: 139 MSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLS 174
S + I+ +DA G G + + +I L+ ++
Sbjct: 144 PSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMN 179
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 28.1 bits (61), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 48/107 (44%), Gaps = 6/107 (5%)
Query: 69 LNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRT 128
+ VK P + ++G G GK+ + G +++ E+ S+ AGE +R+ +
Sbjct: 233 IGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 292
Query: 129 ASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSD 175
A + + + I+++DA + T V +I V L+ L D
Sbjct: 293 AE-----KNAPAIIFIDELDAIAPKREKTHGEVERRI-VSQLLTLMD 333
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 28.1 bits (61), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 48/107 (44%), Gaps = 6/107 (5%)
Query: 69 LNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRT 128
+ VK P + ++G G GK+ + G +++ E+ S+ AGE +R+ +
Sbjct: 233 IGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 292
Query: 129 ASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSD 175
A + + + I+++DA + T V +I V L+ L D
Sbjct: 293 AE-----KNAPAIIFIDELDAIAPKREKTHGEVERRI-VSQLLTLMD 333
>pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
pdb|3D8B|B Chain B, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
Length = 357
Score = 28.1 bits (61), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 44/95 (46%), Gaps = 5/95 (5%)
Query: 79 IWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGK 138
++G G GK+ + I G +SA L S+ GE K++R + V +
Sbjct: 122 LFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWVGEGEKMVRALF-----AVARCQQ 176
Query: 139 MSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNL 173
+ + I++ID+ L + G+ + + +I L+ L
Sbjct: 177 PAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQL 211
>pdb|3U44|A Chain A, Crystal Structure Of Addab-Dna Complex
pdb|3U4Q|A Chain A, Structure Of Addab-Dna Complex At 2.8 Angstroms
Length = 1232
Score = 28.1 bits (61), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 20/27 (74%)
Query: 224 PNLEDILNIVHRMYEKDGITKDEVGSI 250
P++E+ VHR+YEK+ +T+++ +I
Sbjct: 1077 PSIEEAEQTVHRLYEKELLTEEQKDAI 1103
>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
pdb|3HU3|B Chain B, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
Length = 489
Score = 27.7 bits (60), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 48/107 (44%), Gaps = 6/107 (5%)
Query: 69 LNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRT 128
+ VK P + ++G G GK+ + G +++ E+ S+ AGE +R+ +
Sbjct: 233 IGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 292
Query: 129 ASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSD 175
A + + + I+++DA + T V +I V L+ L D
Sbjct: 293 AE-----KNAPAIIFIDELDAIAPKREKTHGEVERRI-VSQLLTLMD 333
>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|B Chain B, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|C Chain C, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|D Chain D, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|E Chain E, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|F Chain F, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
Length = 489
Score = 27.7 bits (60), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 48/107 (44%), Gaps = 6/107 (5%)
Query: 69 LNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRT 128
+ VK P + ++G G GK+ + G +++ E+ S+ AGE +R+ +
Sbjct: 233 IGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 292
Query: 129 ASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSD 175
A + + + I+++DA + T V +I V L+ L D
Sbjct: 293 AE-----KNAPAIIFIDELDAIAPKREKTHGEVERRI-VSQLLTLMD 333
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain
Of Membrane Fusion Atpase P97
pdb|1S3S|A Chain A, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|B Chain B, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|C Chain C, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|D Chain D, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|E Chain E, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|F Chain F, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
Length = 458
Score = 27.7 bits (60), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 48/107 (44%), Gaps = 6/107 (5%)
Query: 69 LNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRT 128
+ VK P + ++G G GK+ + G +++ E+ S+ AGE +R+ +
Sbjct: 233 IGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 292
Query: 129 ASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSD 175
A + + + I+++DA + T V +I V L+ L D
Sbjct: 293 AE-----KNAPAIIFIDELDAIAPKREKTHGEVERRI-VSQLLTLMD 333
>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|B Chain B, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|C Chain C, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|D Chain D, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|E Chain E, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|F Chain F, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
Length = 489
Score = 27.7 bits (60), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 48/107 (44%), Gaps = 6/107 (5%)
Query: 69 LNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRT 128
+ VK P + ++G G GK+ + G +++ E+ S+ AGE +R+ +
Sbjct: 233 IGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 292
Query: 129 ASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSD 175
A + + + I+++DA + T V +I V L+ L D
Sbjct: 293 AE-----KNAPAIIFIDELDAIAPKREKTHGEVERRI-VSQLLTLMD 333
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.139 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,363,209
Number of Sequences: 62578
Number of extensions: 453207
Number of successful extensions: 1125
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 1112
Number of HSP's gapped (non-prelim): 24
length of query: 342
length of database: 14,973,337
effective HSP length: 100
effective length of query: 242
effective length of database: 8,715,537
effective search space: 2109159954
effective search space used: 2109159954
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)