BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019334
(342 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P93431|RCA_ORYSJ Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic
OS=Oryza sativa subsp. japonica GN=RCA PE=1 SV=2
Length = 466
Score = 333 bits (854), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 161/303 (53%), Positives = 217/303 (71%), Gaps = 7/303 (2%)
Query: 36 TRSFEYLQGDYYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIF 95
T F+ G +YIAP FM L+ HI KN++ L N+KVPLILGIWGGKGQGKSFQ EL+F
Sbjct: 112 TYDFDNTMGGFYIAPAFMDKLVVHISKNFMT-LPNIKVPLILGIWGGKGQGKSFQCELVF 170
Query: 96 QAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG 155
MGI P++MSAGELES AGEP KLIR+RYR A+ +++ +GKM CL IND+DAG GR G
Sbjct: 171 AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMG 229
Query: 156 -NTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRD 214
TQ TVNNQ+V TLMN++DNPT V + + + D R+PII TGNDFST+YAPLIRD
Sbjct: 230 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKED-NPRVPIIVTGNDFSTLYAPLIRD 288
Query: 215 GRMEKFYWQPNLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSI 274
GRMEKFYW P +D + + ++ D + +++ IV +FP Q++DF+GALR+R YD +
Sbjct: 289 GRMEKFYWAPTRDDRVGVCKGIFRTDNVPDEDIVKIVDSFPGQSIDFFGALRARVYDDEV 348
Query: 275 SKWIDDIGGVENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSK 334
KW+ D GVEN+G +L+ R+ P F P+ T+E L+E GY L++EQ+ + +L++
Sbjct: 349 RKWVSDT-GVENIGKRLVNSREGP--PEFEQPKMTIEKLMEYGYMLVKEQENVKRVQLAE 405
Query: 335 EYM 337
+Y+
Sbjct: 406 QYL 408
>sp|Q9ZT00|RCA_MAIZE Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic
OS=Zea mays GN=RCA1 PE=2 SV=3
Length = 433
Score = 327 bits (838), Expect = 9e-89, Method: Compositional matrix adjust.
Identities = 166/335 (49%), Positives = 230/335 (68%), Gaps = 14/335 (4%)
Query: 10 GVIDPLFAGNFLGKDSDIV----FDYRQKVTRSFEY--LQGDYYIAPVFMASLLCHIVKN 63
G++D LF +G + + +DY + +S+ + + +YIA FM L+ H+ KN
Sbjct: 86 GLVDNLFQAP-MGDGTHVAVLSSYDYISQGQKSYNFDNMMDGFYIAKGFMDKLVVHLSKN 144
Query: 64 YIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIR 123
++ L N+KVPLILGIWGGKGQGKSFQ EL+F MGI P++MSAGELES AGEP KLIR
Sbjct: 145 FMT-LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGITPIMMSAGELESGNAGEPAKLIR 203
Query: 124 ERYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSI 182
+RYR AS +++ +GKMSCL IND+DAG GR G TQ TVNNQ+V TLMN++DNPT V +
Sbjct: 204 QRYREASDLIK-KGKMSCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQL 262
Query: 183 GQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGI 242
+ + D R+PII TGNDFST+YAPLIRDGRMEKFYW P ED + + ++ DG+
Sbjct: 263 PGMYNKED-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDGV 321
Query: 243 TKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPV 302
++ V +V TFP Q++DF+GALR+R YD + +W+ + GVEN+ KL+ ++ P
Sbjct: 322 DEEHVVQLVDTFPGQSIDFFGALRARVYDDEVRRWVSET-GVENIARKLVNSKEGP--PT 378
Query: 303 FTPPEKTVEALLESGYSLLREQQLIMETKLSKEYM 337
F P+ T+E LLE G+ L+ EQ+ + +L+ +Y+
Sbjct: 379 FEQPKITIEKLLEYGHMLVAEQENVKRVQLADKYL 413
>sp|O49074|RCA_SOLPN Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic
OS=Solanum pennellii PE=2 SV=1
Length = 459
Score = 326 bits (835), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 164/335 (48%), Positives = 226/335 (67%), Gaps = 12/335 (3%)
Query: 10 GVIDPLFAGNFLGKDSDIVFDYRQKVTRSFEYLQGD-----YYIAPVFMASLLCHIVKNY 64
G++D LF + + + V+++ + Q D +YIAP FM L+ HI KN+
Sbjct: 89 GLVDSLFQAPTGTGTHHAIMNSYEYVSQALKTYQLDNKLDGFYIAPAFMDKLVVHITKNF 148
Query: 65 IAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRE 124
+ L N+KVPLILG+WGGKGQGKSFQ EL+F+ MGI P++MSAGELES AGEP KLIR+
Sbjct: 149 LT-LPNIKVPLILGVWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQ 207
Query: 125 RYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIG 183
RYR A+++++ +G M CL IND+DAG GR G TQ TVNNQ+V TLMN++DNPT V +
Sbjct: 208 RYREAAEIIR-KGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLP 266
Query: 184 QDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGIT 243
+ + + R+PII TGNDFST+YAPLIRDGRMEKFYW P ED + + ++ D +
Sbjct: 267 GMYNKQE-NARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDNVP 325
Query: 244 KDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVF 303
++ V IV +FP Q++DF+GALR+R YD + KW+ G+E +G KLL R P F
Sbjct: 326 EEAVVKIVDSFPGQSIDFFGALRARVYDDEVRKWVSGT-GIELIGEKLLNSRDGP--PTF 382
Query: 304 TPPEKTVEALLESGYSLLREQQLIMETKLSKEYMK 338
P+ T+E LLE G L++EQ+ + +L++ Y+K
Sbjct: 383 EQPKMTLEKLLEYGNMLVQEQENVKRVQLAETYLK 417
>sp|P10871|RCA_SPIOL Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic
OS=Spinacia oleracea PE=1 SV=2
Length = 472
Score = 322 bits (826), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 163/338 (48%), Positives = 229/338 (67%), Gaps = 16/338 (4%)
Query: 10 GVIDPLF-----AGNFLGKDSDIVFDYRQKVTRSFEY--LQGDYYIAPVFMASLLCHIVK 62
G++D LF AG + S F+Y + R ++ + GD+YIAP FM L+ HI K
Sbjct: 88 GMVDSLFQAPADAGTHVPIQSS--FEYESQGLRKYDIDNMLGDFYIAPAFMDKLVVHITK 145
Query: 63 NYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLI 122
N++ +L N+K+PLILG+WGGKGQGKSFQ EL+F +GI P++MSAGELES AGEP KLI
Sbjct: 146 NFL-NLPNIKIPLILGVWGGKGQGKSFQCELVFAKLGINPIMMSAGELESGNAGEPAKLI 204
Query: 123 RERYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVS 181
R+RYR A+ ++ +GKM L IND++ G GR G TQ TVNNQ+V TLMN++DNPT V
Sbjct: 205 RQRYREAADLIA-KGKMCALFINDLEPGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQ 263
Query: 182 IGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDG 241
+ + + D R+PII TGNDFST+YAPLIRDGRMEKFYW P ED + + +++ D
Sbjct: 264 LPGMYNKQD-NARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCTGIFKTDK 322
Query: 242 ITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELP 301
+ + V +V FP Q++DF+GALR+R Y + KW++ + GV+N+G KL+ + P
Sbjct: 323 VPAEHVVKLVDAFPGQSIDFFGALRARVYHDEVRKWVNSV-GVDNVGKKLVNSKDGP--P 379
Query: 302 VFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYMKN 339
VF PE T++ L+E G L++EQ+ + +L+ +YM +
Sbjct: 380 VFEQPEMTLQKLMEYGNMLVQEQENVKRVQLADQYMSS 417
>sp|Q40073|RCAA_HORVU Ribulose bisphosphate carboxylase/oxygenase activase A,
chloroplastic OS=Hordeum vulgare GN=RCAA PE=2 SV=1
Length = 464
Score = 322 bits (826), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 164/335 (48%), Positives = 225/335 (67%), Gaps = 14/335 (4%)
Query: 10 GVIDPLFAGNFLGKDSDIVFDYRQKVTRS-----FEYLQGDYYIAPVFMASLLCHIVKNY 64
G++D LF + V + V++ F+ G +YIAP FM L+ H+ KN+
Sbjct: 80 GIVDSLFQAPTGHGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIAPAFMDKLVVHLSKNF 139
Query: 65 IAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRE 124
+ L N+K+PLILGIWGGKGQGKSFQ EL+F MGI P++MSAGELES AGEP KLIR+
Sbjct: 140 MT-LPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQ 198
Query: 125 RYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIG 183
RYR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ+V TLMN++D PT V +
Sbjct: 199 RYREAADMIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADAPTNVQLP 257
Query: 184 QDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGIT 243
+ + + R+PI+ TGNDFST+YAPLIRDGRMEKFYW P +D + + +++ D ++
Sbjct: 258 GMYNKRE-NPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVS 316
Query: 244 KDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPV- 302
+ V IV TFP Q++DF+GALR+R YD + KW+ G+EN+G +L+ R + PV
Sbjct: 317 DESVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVGST-GIENIGKRLVNSR---DGPVT 372
Query: 303 FTPPEKTVEALLESGYSLLREQQLIMETKLSKEYM 337
F P+ TVE LLE G+ L++EQ + +L+ YM
Sbjct: 373 FEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYM 407
>sp|Q40460|RCA1_TOBAC Ribulose bisphosphate carboxylase/oxygenase activase 1,
chloroplastic OS=Nicotiana tabacum PE=1 SV=1
Length = 442
Score = 321 bits (823), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 163/320 (50%), Positives = 218/320 (68%), Gaps = 19/320 (5%)
Query: 32 RQKVTRSFEYL-QG-----------DYYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGI 79
V +S+EY+ QG +YIAP FM L+ HI KN++ L N+KVPLILGI
Sbjct: 109 HHAVLQSYEYVSQGLRQYNLDNKLDGFYIAPAFMDKLVVHITKNFL-KLPNIKVPLILGI 167
Query: 80 WGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKM 139
WGGKGQGKSFQ EL+F+ MGI P++MSAGELES AGEP KLIR+RYR A+++++ +G M
Sbjct: 168 WGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIR-KGNM 226
Query: 140 SCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPII 198
CL IND+DAG GR G TQ TVNNQ+V TLMN++DNPT V + + + + R+PII
Sbjct: 227 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQE-NARVPII 285
Query: 199 FTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQA 258
TGNDFST+YAPLIRDGRMEKFYW P ED + + ++ D + ++V IV FP Q+
Sbjct: 286 VTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCTGIFRTDNVPAEDVVKIVDNFPGQS 345
Query: 259 LDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVFTPPEKTVEALLESGY 318
+DF+GALR+R YD + KW+ G+E +G+KLL P F P+ T+E LLE G
Sbjct: 346 IDFFGALRARVYDDEVRKWVSGT-GIEKIGDKLLNSFDGP--PTFEQPKMTIEKLLEYGN 402
Query: 319 SLLREQQLIMETKLSKEYMK 338
L++EQ+ + +L+ +Y+K
Sbjct: 403 MLVQEQENVKRVQLADKYLK 422
>sp|O98997|RCA_VIGRR Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic
OS=Vigna radiata var. radiata GN=RCA PE=2 SV=2
Length = 439
Score = 320 bits (820), Expect = 9e-87, Method: Compositional matrix adjust.
Identities = 161/334 (48%), Positives = 226/334 (67%), Gaps = 14/334 (4%)
Query: 10 GVIDPLF-----AGNFLGKDSDIVFDYRQKVTRSFEYLQGDYYIAPVFMASLLCHIVKNY 64
G++DPLF AG S ++Y R + ++ +YIAP F+ L+ HI KN+
Sbjct: 94 GMVDPLFQAPMDAGTHYAVMSS--YEYLSTGLRQLDNIKDGFYIAPAFLDKLVVHITKNF 151
Query: 65 IAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRE 124
+ L N+KVPLILGIWGGKGQGKSFQ EL+F MGI P++MSAGELES AGEP KLIR+
Sbjct: 152 MT-LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQ 210
Query: 125 RYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIG 183
RYR A+ ++ +GKM L IND+DAG GR G TQ TVNNQ+V TLMN++DNPT V +
Sbjct: 211 RYREAADLIA-KGKMCALFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLP 269
Query: 184 QDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGIT 243
+ + + R+PII TGNDFST+YAPLIRDGRMEKFYW P +D + + ++ DG+
Sbjct: 270 GMYNKEE-NARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRVGVCKGIFRTDGVP 328
Query: 244 KDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVF 303
++++ +V TFP Q++DF+GALR+R YD + KWI + GV+ G KL+ ++ P F
Sbjct: 329 EEDITKLVDTFPGQSIDFFGALRARVYDDEVRKWISGV-GVDATGKKLVNSKEGP--PTF 385
Query: 304 TPPEKTVEALLESGYSLLREQQLIMETKLSKEYM 337
P+ +++ LL+ G L++EQ+ + +L+ +Y+
Sbjct: 386 DQPKMSLDKLLQYGNMLVQEQENVKRVQLADKYL 419
>sp|Q40565|RCA2_TOBAC Ribulose bisphosphate carboxylase/oxygenase activase 2,
chloroplastic OS=Nicotiana tabacum GN=RCA PE=2 SV=1
Length = 439
Score = 320 bits (820), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 164/335 (48%), Positives = 222/335 (66%), Gaps = 12/335 (3%)
Query: 10 GVIDPLFAGNFLGKDSDIVFDYRQKVTRSFEYLQGD-----YYIAPVFMASLLCHIVKNY 64
G++D LF V + V++ D +YIAP FM L+ HI KN+
Sbjct: 94 GMVDSLFQAPTGTGTHHAVLQSYEYVSQGLRQYNMDNTLDGFYIAPSFMDKLVVHITKNF 153
Query: 65 IAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRE 124
+ L N+KVPLILG+WGGKGQGKSFQ EL+F+ MGI P++MSAGELES AGEP KLIR+
Sbjct: 154 L-KLPNIKVPLILGVWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQ 212
Query: 125 RYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIG 183
RYR A+++++ +G + CL IND+DAG GR G TQ TVNNQ+V TLMN++DNPT V +
Sbjct: 213 RYREAAEIIR-KGNICCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLP 271
Query: 184 QDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGIT 243
+ + + R+PII TGNDFST+YAPLIRDGRMEKFYW P ED + + ++ D +
Sbjct: 272 GMYNKQE-NARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDNVP 330
Query: 244 KDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVF 303
++ V IV TFP Q++DF+GALR+R YD + KW+ G+E +G+KLL P F
Sbjct: 331 EEAVIKIVDTFPGQSIDFFGALRARVYDDEVRKWVSGT-GIEAIGDKLLNSFDGP--PTF 387
Query: 304 TPPEKTVEALLESGYSLLREQQLIMETKLSKEYMK 338
P+ TVE LLE G L++EQ+ + +L++ Y+K
Sbjct: 388 EQPKMTVEKLLEYGNMLVQEQENVKRVQLAETYLK 422
>sp|Q7X999|RCA2_LARTR Ribulose bisphosphate carboxylase/oxygenase activase 2,
chloroplastic OS=Larrea tridentata GN=RCA2 PE=2 SV=1
Length = 435
Score = 320 bits (820), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 152/293 (51%), Positives = 211/293 (72%), Gaps = 7/293 (2%)
Query: 46 YYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIM 105
+YIAP FM L+ HI KN+++ L N+K+PLILGIWGGKGQGKSFQ EL+F MGI P++M
Sbjct: 131 FYIAPAFMDKLVVHITKNFLS-LPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 189
Query: 106 SAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQ 164
SAGELES AGEP KLIR+RYR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ
Sbjct: 190 SAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQ 248
Query: 165 IVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQP 224
+V TLMN++DNPT V + + + + R+PII TGNDFST+YAPLIRDGRMEKFYW P
Sbjct: 249 MVNATLMNIADNPTNVQLPGMYNKEE-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 307
Query: 225 NLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGV 284
ED + + ++ D + ++++ +V FP Q++DF+GALR+R YD + KW+ ++ GV
Sbjct: 308 TREDRIGVCKGIFRTDNVPEEDIVKVVDQFPGQSIDFFGALRARVYDDEVRKWVSEV-GV 366
Query: 285 ENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYM 337
+ +G KL+ ++ P F P+ T++ LL+ G L+ EQ+ + +L+ +YM
Sbjct: 367 DTIGKKLVNSKEGP--PTFEQPKMTIDKLLQYGNMLVEEQENVKRVQLADKYM 417
>sp|Q7X9A0|RCA1_LARTR Ribulose bisphosphate carboxylase/oxygenase activase 1,
chloroplastic OS=Larrea tridentata GN=RCA1 PE=1 SV=1
Length = 476
Score = 318 bits (816), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 153/293 (52%), Positives = 210/293 (71%), Gaps = 7/293 (2%)
Query: 46 YYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIM 105
+YIAP FM L+ HI KN+++ L N+K+PLILGIWGGKGQGKSFQ EL+F MGI P++M
Sbjct: 131 FYIAPAFMDKLVVHITKNFLS-LPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 189
Query: 106 SAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQ 164
SAGELES AGEP KLIR+RYR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ
Sbjct: 190 SAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQ 248
Query: 165 IVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQP 224
+V TLMN++DNPT V + + + + R+PII TGNDFST+YAPLIRDGRMEKFYW P
Sbjct: 249 MVNATLMNIADNPTNVQLPGMYNKEE-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 307
Query: 225 NLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGV 284
ED + + ++ D + D++ +V TFP Q++DF+GALR+R Y + KW+ ++ GV
Sbjct: 308 TREDRIGVCKGIFRTDNVADDDIVKLVDTFPGQSIDFFGALRARVYHDEVRKWVSEV-GV 366
Query: 285 ENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYM 337
+ +G KL+ ++ P F P+ T++ LL G L++EQ+ + +L+ +YM
Sbjct: 367 DTIGKKLVNSKEGP--PSFEQPKMTIDKLLGYGGMLVQEQENVKRVQLADKYM 417
>sp|Q01587|RCA_CUCSA Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic
OS=Cucumis sativus PE=2 SV=1
Length = 413
Score = 318 bits (815), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 165/329 (50%), Positives = 218/329 (66%), Gaps = 12/329 (3%)
Query: 10 GVIDPLFAGNFLGKDSDIV---FDYRQKVTRSFEYLQG--DYYIAPVFMASLLCHIVKNY 64
G+ DPLF + V ++Y R + Y +YIAP FM L HIVKN+
Sbjct: 87 GLADPLFQAPMGTGTHNAVLSSYEYISAGLRDYSYDNNVDGFYIAPAFMDKLTVHIVKNF 146
Query: 65 IAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRE 124
+ L N+KVPLILG+WGGKGQGKSFQ EL+F MGI P++MSAGELES AGEP KLIR+
Sbjct: 147 LT-LPNIKVPLILGVWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQ 205
Query: 125 RYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIG 183
RYR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ+V TLMN++DNPT V +
Sbjct: 206 RYREAADIIK-KGKMCCLFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLP 264
Query: 184 QDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGIT 243
+ + + R+PII TGNDFST+YAPLIRDGRM+KFYW P ED + I ++ DG+
Sbjct: 265 GMYNKEE-NPRVPIIVTGNDFSTLYAPLIRDGRMDKFYWAPTREDRIGICTGIFRTDGVP 323
Query: 244 KDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVF 303
+++ +V TFP Q++DF+GALR+R YD + KW + GVE +G L+ ++ P F
Sbjct: 324 FEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWAVGV-GVERIGRNLVNSKESP--PTF 380
Query: 304 TPPEKTVEALLESGYSLLREQQLIMETKL 332
P+ T+E LLE G L+ EQ+ + KL
Sbjct: 381 DQPKMTIEKLLEYGNMLVMEQENVKRVKL 409
>sp|Q40281|RCA_MALDO Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic
OS=Malus domestica GN=RCA PE=2 SV=1
Length = 437
Score = 317 bits (812), Expect = 8e-86, Method: Compositional matrix adjust.
Identities = 156/293 (53%), Positives = 210/293 (71%), Gaps = 7/293 (2%)
Query: 46 YYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIM 105
YYIAP FM L+ HI KN++ L N+KVPLILGIWGGKGQGKSFQ EL+F M I P++M
Sbjct: 131 YYIAPAFMDKLVVHITKNFMT-LPNMKVPLILGIWGGKGQGKSFQCELVFAKMRISPIMM 189
Query: 106 SAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQ 164
SAGELES AGEP KLIR+RYR A+ +++ +GKM L IND+DAG GR G TQ TVNNQ
Sbjct: 190 SAGELESGNAGEPAKLIRQRYREAADIIR-KGKMCALFINDLDAGAGRLGGTTQYTVNNQ 248
Query: 165 IVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQP 224
+V TLMN++DNPT V + + + + R+PII TGNDFST+YAPLIRDGRMEKFYW P
Sbjct: 249 MVNATLMNIADNPTNVQLPGMYNKEE-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 307
Query: 225 NLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGV 284
ED + + ++ D + K+++ +V TFP Q++DF+GALR+R YD + KWI + GV
Sbjct: 308 TREDRIGVCIGIFRSDNVAKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWITGV-GV 366
Query: 285 ENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYM 337
+++G KL+ ++ P F P+ T+E LLE G L++EQ+ + +L+ +Y+
Sbjct: 367 DSIGKKLVNSKEGP--PTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADKYL 417
>sp|Q42450|RCAB_HORVU Ribulose bisphosphate carboxylase/oxygenase activase B,
chloroplastic OS=Hordeum vulgare GN=RCAB PE=2 SV=1
Length = 425
Score = 316 bits (810), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 160/334 (47%), Positives = 222/334 (66%), Gaps = 13/334 (3%)
Query: 10 GVIDPLFAGNFLGKDSDIVFDYRQKVTRS-----FEYLQGDYYIAPVFMASLLCHIVKNY 64
G++D LF + + + +++ F+ YIAP FM L+ H+ KN+
Sbjct: 78 GIVDSLFQAPMGDGTHEAILSSYEYISQGLRKYDFDNTMDGLYIAPAFMDKLIVHLAKNF 137
Query: 65 IAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRE 124
+ L N+KVPLILGIWGGKGQGKSFQ EL+F MGI P++MSAGELES GEP KLIR+
Sbjct: 138 MT-LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGN-GEPAKLIRQ 195
Query: 125 RYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIG 183
RYR A+ ++ N+GKM CL IND+DAG GR G TQ TVNNQ+V TLMN++D PT V +
Sbjct: 196 RYREAADII-NKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADAPTNVQLP 254
Query: 184 QDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGIT 243
+ + + R+PII TGNDFST+YAPLIRDGRMEKFYW P ED + + ++ D +
Sbjct: 255 GMYNKEE-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDNVP 313
Query: 244 KDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVF 303
+ V +V TFP Q++DF+GALR+R YD + KW+ +I GVEN+ +L+ R+ P F
Sbjct: 314 DEAVVRLVDTFPGQSIDFFGALRARVYDDEVRKWVGEI-GVENISKRLVNSREGP--PTF 370
Query: 304 TPPEKTVEALLESGYSLLREQQLIMETKLSKEYM 337
P+ T+E L+E G+ L++EQ+ + +L+ +Y+
Sbjct: 371 DQPKMTIEKLMEYGHMLVQEQENVKRVQLADKYL 404
>sp|P10896|RCA_ARATH Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic
OS=Arabidopsis thaliana GN=RCA PE=1 SV=2
Length = 474
Score = 316 bits (809), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 155/293 (52%), Positives = 209/293 (71%), Gaps = 7/293 (2%)
Query: 46 YYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIM 105
+YIAP FM L+ HI KN++ L N+KVPLILGIWGGKGQGKSFQ EL+ MGI P++M
Sbjct: 131 FYIAPAFMDKLVVHITKNFLT-LPNIKVPLILGIWGGKGQGKSFQCELVMAKMGINPIMM 189
Query: 106 SAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQ 164
SAGELES AGEP KLIR+RYR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ
Sbjct: 190 SAGELESGNAGEPAKLIRQRYREAADLIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQ 248
Query: 165 IVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQP 224
+V TLMN++DNPT V + + + + R+PII TGNDFST+YAPLIRDGRMEKFYW P
Sbjct: 249 MVNATLMNIADNPTNVQLPGMYNKEE-NARVPIICTGNDFSTLYAPLIRDGRMEKFYWAP 307
Query: 225 NLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGV 284
ED + + ++ D I +++ ++V FP Q++DF+GALR+R YD + K+++ + GV
Sbjct: 308 TREDRIGVCKGIFRTDKIKDEDIVTLVDQFPGQSIDFFGALRARVYDDEVRKFVESL-GV 366
Query: 285 ENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYM 337
E +G +L+ R+ PVF PE T E L+E G L+ EQ+ + +L++ Y+
Sbjct: 367 EKIGKRLVNSREGP--PVFEQPEMTYEKLMEYGNMLVMEQENVKRVQLAETYL 417
>sp|O64981|RCA_PHAVU Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic
OS=Phaseolus vulgaris GN=RCA1 PE=2 SV=1
Length = 441
Score = 312 bits (799), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 152/301 (50%), Positives = 212/301 (70%), Gaps = 7/301 (2%)
Query: 38 SFEYLQGDYYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQA 97
+F+ ++ +YIAP F+ L+ HI KN++ L N+KVPLILG+WGGKGQGKSFQ EL+F
Sbjct: 127 NFDNIKDGFYIAPAFLDKLVVHIAKNFMT-LPNIKVPLILGVWGGKGQGKSFQCELVFAK 185
Query: 98 MGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG-N 156
MGI P++MSAGELES AGEP KLIR+RYR AS +++ +GKM L IND+DAG GR G
Sbjct: 186 MGINPIMMSAGELESGNAGEPAKLIRQRYREASDLIK-KGKMCVLFINDLDAGAGRLGGT 244
Query: 157 TQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGR 216
TQ TVNNQ+V TLMN++DNPT V + + + D R+PII TGNDFST+YAPLIRDGR
Sbjct: 245 TQYTVNNQMVNATLMNIADNPTNVQLPGMYNKED-NARVPIIVTGNDFSTLYAPLIRDGR 303
Query: 217 MEKFYWQPNLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISK 276
MEKFYW P ED + + ++ DG+ + ++ +V P Q++DF+GALR+R YD + K
Sbjct: 304 MEKFYWAPTREDRIGVCKGIFRTDGVPEKDIVELVDKHPGQSIDFFGALRARVYDDEVRK 363
Query: 277 WIDDIGGVENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEY 336
WI + GV+++G KL+ ++ P F P+ T++ LL L++EQ+ + +L+ +Y
Sbjct: 364 WISGV-GVDSVGKKLVNSKEGP--PTFDQPKMTLDKLLLYASMLVQEQENVKRVQLADQY 420
Query: 337 M 337
+
Sbjct: 421 L 421
>sp|P23489|RCA_CHLRE Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic
OS=Chlamydomonas reinhardtii PE=2 SV=1
Length = 408
Score = 304 bits (778), Expect = 8e-82, Method: Compositional matrix adjust.
Identities = 153/332 (46%), Positives = 223/332 (67%), Gaps = 12/332 (3%)
Query: 11 VIDPLFAGNF-LGKDSDIVF---DYRQKVTRSFEYLQGDYYIAPVFMASLLCHIVKNYIA 66
++D LF G F G + V +Y + SF ++ +YI+P F+ + HI KN++
Sbjct: 65 MVDDLFQGGFGAGGTHNAVLSSQEYLSQSRASFNNIEDGFYISPAFLDKMTIHIAKNFM- 123
Query: 67 HLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERY 126
L +KVPLILGIWGGKGQGK+FQ L ++ +GI P++MSAGELES AGEP KLIR RY
Sbjct: 124 DLPKIKVPLILGIWGGKGQGKTFQCALAYKKLGIAPIVMSAGELESGNAGEPAKLIRTRY 183
Query: 127 RTASQVVQNQGKMSCLMINDIDAGLGRFGNT-QMTVNNQIVVGTLMNLSDNPTRVSIGQD 185
R AS +++ +G+M L IND+DAG GR G+T Q TVNNQ+V TLMN++DNPT V +
Sbjct: 184 REASDIIK-KGRMCSLFINDLDAGAGRMGDTTQYTVNNQMVNATLMNIADNPTNVQLPGV 242
Query: 186 WRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITKD 245
++ +I R+PI+ TGNDFST+YAPLIRDGRMEK+YW P ED + + ++++D + +
Sbjct: 243 YKNEEIP-RVPIVCTGNDFSTLYAPLIRDGRMEKYYWNPTREDRIGVCMGIFQEDNVQRR 301
Query: 246 EVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVFTP 305
EV ++V TFP Q++DF+GALR+R YD + +WI D GV+ +G +L+ R+ +P +
Sbjct: 302 EVENLVDTFPGQSIDFFGALRARVYDDMVRQWITDT-GVDKIGQQLVNARQKVAMPKVS- 359
Query: 306 PEKTVEALLESGYSLLREQQLIMETKLSKEYM 337
+ L++ G SL+ EQ+ + +L+ Y+
Sbjct: 360 --MDLNVLIKYGKSLVDEQENVKRVQLADAYL 389
>sp|P58555|RCA_NOSS1 Ribulose bisphosphate carboxylase/oxygenase activase OS=Nostoc sp.
(strain PCC 7120 / UTEX 2576) GN=rca PE=3 SV=1
Length = 414
Score = 281 bits (720), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 145/294 (49%), Positives = 204/294 (69%), Gaps = 6/294 (2%)
Query: 46 YYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIM 105
YYIAP F+ L HI KN++ ++ V+VPLILGI G KG+GK+FQ EL F+ MGIE ++
Sbjct: 3 YYIAPRFLDKLAVHITKNFL-NIPGVRVPLILGIHGRKGEGKTFQCELAFEKMGIEVTLI 61
Query: 106 SAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGN-TQMTVNNQ 164
S GELES AG+P +LIR RYR +++++ +GKM LMIND+DAG GRF TQ TVN Q
Sbjct: 62 SGGELESPDAGDPARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEGTQYTVNTQ 121
Query: 165 IVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQP 224
+V TLMN++DNPT V + + +S+ R+PII TGNDFST+YAPLIRDGRMEKFYW+P
Sbjct: 122 LVNATLMNIADNPTDVQLPGSY-DSNPIRRVPIIVTGNDFSTLYAPLIRDGRMEKFYWEP 180
Query: 225 NLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGV 284
N +D + IV ++ +DG+++ E+ +V TFP Q++DF+ ALRSR YD I +I + G
Sbjct: 181 NRDDKVGIVGGIFAEDGLSQREIEQLVDTFPKQSIDFFSALRSRIYDIQIRDFIHKV-GF 239
Query: 285 ENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYMK 338
E + +++ + P F P+ ++ L+ESG +L EQQ + ++L EY +
Sbjct: 240 ERISLRVVNSLEAP--PEFKKPDFSLAHLIESGNLVLGEQQRVDNSQLVDEYNR 291
>sp|Q06721|RCA_ANASC Ribulose bisphosphate carboxylase/oxygenase activase OS=Anabaena
sp. (strain CA / ATCC 33047) GN=rca PE=3 SV=1
Length = 415
Score = 281 bits (719), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 143/294 (48%), Positives = 204/294 (69%), Gaps = 6/294 (2%)
Query: 46 YYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIM 105
YYIAP F+ L HI KN++ +L V+VPLILGI G KG+GK+FQ EL F+ MG+E ++
Sbjct: 3 YYIAPRFLDKLAVHITKNFL-NLPGVRVPLILGIHGRKGEGKTFQCELAFEKMGVEVTLI 61
Query: 106 SAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGN-TQMTVNNQ 164
S GELES AG+P +LIR RYR +++++ +GKM LMIND+DAG GRF TQ TVN Q
Sbjct: 62 SGGELESPDAGDPARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEGTQYTVNTQ 121
Query: 165 IVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQP 224
+V TLMN++DNPT V + + +S R+PII TGNDFST+YAPLIRDGRMEKFYW+P
Sbjct: 122 LVNATLMNIADNPTDVQLPGSY-DSTPLRRVPIIVTGNDFSTLYAPLIRDGRMEKFYWEP 180
Query: 225 NLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGV 284
+ ++ + IV ++ +DG+++ +V +V +FPNQ++DF+ ALRSR YD I +I + G
Sbjct: 181 HRDEKVGIVGGIFAEDGLSQRDVEKLVDSFPNQSIDFFSALRSRIYDEQIRDFIHQV-GY 239
Query: 285 ENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKEYMK 338
EN+ +++ + P F P+ T+ L+ES ++ EQ+ I ++L EY +
Sbjct: 240 ENVSLRVVNSLEGP--PAFKKPDFTLSHLIESANFMVAEQKRIETSQLVDEYNR 291
>sp|P85086|RCA_ARAHY Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic
(Fragments) OS=Arachis hypogaea GN=RCA PE=1 SV=1
Length = 140
Score = 93.2 bits (230), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 67/197 (34%), Positives = 79/197 (40%), Gaps = 100/197 (50%)
Query: 70 NVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTA 129
++VPLILGIWGGK MGI P++MSAGELES AGEP
Sbjct: 44 GLRVPLILGIWGGK--------------MGINPIMMSAGELESGNAGEP----------- 78
Query: 130 SQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRES 189
KM CL IND+DAG G
Sbjct: 79 -------AKMCCLFINDLDAGAG------------------------------------- 94
Query: 190 DITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITKDEVGS 249
R+PII TGNDFST+YAPLIR G +
Sbjct: 95 ----RVPIIVTGNDFSTLYAPLIRIGVCTGIF---------------------------R 123
Query: 250 IVKTFPNQALDFYGALR 266
+V TFP Q++DF+GALR
Sbjct: 124 LVDTFPGQSIDFFGALR 140
>sp|P85111|RCA_VITSX Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic
(Fragments) OS=Vitis sp. PE=1 SV=1
Length = 62
Score = 55.8 bits (133), Expect = 5e-07, Method: Composition-based stats.
Identities = 29/58 (50%), Positives = 32/58 (55%), Gaps = 18/58 (31%)
Query: 98 MGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG 155
MGI P++MSAGELES AGEP KM CL IND+DAG GR G
Sbjct: 16 MGINPIMMSAGELESGNAGEP------------------AKMCCLFINDLDAGAGRIG 55
>sp|Q9ZPR1|CD48B_ARATH Cell division control protein 48 homolog B OS=Arabidopsis thaliana
GN=CDC48B PE=2 SV=1
Length = 603
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 75/177 (42%), Gaps = 17/177 (9%)
Query: 66 AHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRER 125
A L +K P L ++G G GK+ + Q +++S + AGE K++RE
Sbjct: 48 ARTLGLKWPRGLLLYGPPGTGKTSLVRAVVQECDAHLIVLSPHSVHRAHAGESEKVLREA 107
Query: 126 YRTASQVVQNQGKMSCLMINDIDAGLGRF-GNTQMTVNNQIVVGTLMNLSDNPTRVSIGQ 184
+ AS + K S + I++ID R + V + TLM+ S+ P
Sbjct: 108 FAEASSHAVSD-KPSVIFIDEIDVLCPRRDARREQDVRIASQLFTLMD-SNKP------- 158
Query: 185 DWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKF--YWQPNLEDILNIVHRMYEK 239
S R+ ++ + N I L R GR + PN ED L I+ ++Y K
Sbjct: 159 ----SSSAPRVVVVASTNRVDAIDPALRRAGRFDALVEVSTPNEEDRLKIL-QLYTK 210
>sp|Q58889|PRS2_METJA Putative 26S protease regulatory subunit homolog MJ1494
OS=Methanocaldococcus jannaschii (strain ATCC 43067 /
DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ1494
PE=3 SV=2
Length = 371
Score = 38.1 bits (87), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 47/100 (47%), Gaps = 10/100 (10%)
Query: 58 CHIVKNYIAH--LLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERA 115
C I+ Y+ + L P + +G G GK+ + +++ A EL E
Sbjct: 136 CRIIMKYLENPKLFGEWAPKNVLFYGPPGTGKTLMARALATETNSSFILVKAPELIGEHV 195
Query: 116 GEPGKLIRERYRTASQVVQNQGKMSCLM-INDIDA-GLGR 153
G+ K+IRE Y+ AS+ C++ I+++DA GL R
Sbjct: 196 GDASKMIRELYQRASE------SAPCIVFIDELDAIGLSR 229
>sp|O28972|Y1297_ARCFU Cell division cycle protein 48 homolog AF_1297 OS=Archaeoglobus
fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM
9628 / NBRC 100126) GN=AF_1297 PE=3 SV=1
Length = 733
Score = 37.0 bits (84), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 63/155 (40%), Gaps = 17/155 (10%)
Query: 70 NVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTA 129
N+K P + ++G G GK+ + + + + EL S+ GE K +RE +R A
Sbjct: 485 NIKPPRGILLFGPPGTGKTLLAKAVANESNANFISVKGPELLSKWVGESEKHVREMFRKA 544
Query: 130 SQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRES 189
QV + ++ID+ R G + + VV L+ D +
Sbjct: 545 RQVAP-----CVIFFDEIDSLAPRRGGIGDSHVTERVVSQLLTELDGLEEL--------K 591
Query: 190 DITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQP 224
D+ +I N I L+R GR+E+ + P
Sbjct: 592 DVV----VIAATNRPDMIDPALLRPGRLERHIYIP 622
>sp|Q8SRH0|PRS4_ENCCU 26S protease regulatory subunit 4 homolog OS=Encephalitozoon
cuniculi (strain GB-M1) GN=RPT2 PE=1 SV=1
Length = 424
Score = 37.0 bits (84), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 66/153 (43%), Gaps = 19/153 (12%)
Query: 69 LNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRT 128
+ +K P + ++G G GK+ + + + + EL E GE KL+RE +R
Sbjct: 198 MGIKPPKGVILYGLPGTGKTLLAKAVANQTSATFLRVVGTELIQEYLGEGPKLVRELFRV 257
Query: 129 ASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQI--VVGTLMNLSDNPTRVSIGQDW 186
A + S + I++IDA G+ NT ++ + L+N D G D
Sbjct: 258 A-----DMHAPSIIFIDEIDAIGGKRYNTSSGGRREVQRTMLELLNQLD-------GFDT 305
Query: 187 RESDITNRIPIIFTGNDFSTIYAPLIRDGRMEK 219
R N I +I N + LIR GR+++
Sbjct: 306 R-----NDIKVIMATNKIEALDPALIRPGRIDR 333
>sp|P75088|Y026_MYCPN Probable GTP-binding protein MG024 homolog OS=Mycoplasma pneumoniae
(strain ATCC 29342 / M129) GN=MPN_026 PE=3 SV=1
Length = 362
Score = 36.6 bits (83), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 80/182 (43%), Gaps = 32/182 (17%)
Query: 44 GDYYIAPVFMASLLCHIVKNY----IAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAM- 98
G+ ++A + L+CH+V+ Y I H+ N P+ F E+I +
Sbjct: 86 GNQFLANIREVDLICHVVRCYEDKKIVHVNNQVDPV-------------FDFEIIVNELI 132
Query: 99 --GIEPVIMSAGELESERAGEPG-KLIRERYRTASQVVQ--NQGKMSCLMINDIDAGLGR 153
IE V G++ +R E G K +E Y+ + V+Q Q +M ++N++D +
Sbjct: 133 QADIEVVNTRIGKI--KRKAESGDKQSKEEYQLLAPVLQGLQQNQMVLHLVNEVDLKKLK 190
Query: 154 FGNTQMTVNNQIVVGT-----LMNLSDNPTRVSIGQDWRESDITNRIPII-FTGNDFSTI 207
+T +VV L NL NP + Q ++ ++ + IP+ N+ S++
Sbjct: 191 -SLNLLTAKPILVVANVSEADLSNLDHNPHLTQLNQFLKQHNLPHAIPVCALLENELSSL 249
Query: 208 YA 209
A
Sbjct: 250 DA 251
>sp|A7YSY2|SPA5L_BOVIN Spermatogenesis-associated protein 5-like protein 1 OS=Bos taurus
GN=SPATA5L1 PE=2 SV=1
Length = 767
Score = 36.6 bits (83), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 68/151 (45%), Gaps = 15/151 (9%)
Query: 69 LNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRT 128
L ++VP + + G G GK+ + + G E + +SA L+ R GE + +R ++
Sbjct: 229 LGLEVPRGVLLAGPPGVGKTQLVRAVARETGAELLAVSAPALQGARPGETEENVRRIFKR 288
Query: 129 ASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRE 188
A ++ + + L ++++DA R G +++V L L IG+D RE
Sbjct: 289 ARELASRRPTL--LFLDEVDALCPRRGGPHQAPESRVVAQVLTLLD------GIGED-RE 339
Query: 189 SDITNRIPIIFTGNDFSTIYAPLIRDGRMEK 219
+ ++ + N + L R GR ++
Sbjct: 340 ------VVVVGSTNRPDALDPALRRPGRFDR 364
>sp|Q07844|RIX7_YEAST Ribosome biogenesis ATPase RIX7 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RIX7 PE=1 SV=1
Length = 837
Score = 35.4 bits (80), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 75/166 (45%), Gaps = 22/166 (13%)
Query: 79 IWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGK 138
+WG G GK+ + + + + EL ++ GE + IR+ + A +
Sbjct: 572 LWGPPGCGKTLLAKAVANESRANFISIKGPELLNKYVGESERSIRQVFTRA------RAS 625
Query: 139 MSCLM-INDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPI 197
+ C++ +++DA + R +T ++ ++ VV TL+ D G + R I +
Sbjct: 626 VPCVIFFDELDALVPR-RDTSLSESSSRVVNTLLTELD-------GLNDRRG-----IFV 672
Query: 198 IFTGNDFSTIYAPLIRDGRMEK--FYWQPNLEDILNIVHRMYEKDG 241
I N I ++R GR++K F PN E+ L+I+ + + G
Sbjct: 673 IGATNRPDMIDPAMLRPGRLDKSLFIELPNTEEKLDIIKTLTKSHG 718
>sp|B6YV97|COBQ_THEON Probable cobyric acid synthase OS=Thermococcus onnurineus (strain
NA1) GN=cobQ PE=3 SV=1
Length = 484
Score = 35.0 bits (79), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 68/159 (42%), Gaps = 29/159 (18%)
Query: 88 SFQTELIFQAMGIEPVIMSAGELES-ERAGEPGKLIRERYRTASQVVQNQGKMSCLMIND 146
S + EL +AM + +M E+ E AG P ++ + Y A+ V K +++ D
Sbjct: 107 SRKEELFRKAMKVLDELMVEHEIVIIEGAGSPVEINLKDYDIANMRVARHAKAKTILVTD 166
Query: 147 IDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFST 206
ID G G F + +VGT+ LS + +G F N F
Sbjct: 167 IDRG-GSFAS---------IVGTMELLSKEERNLILG---------------FVFNKFRG 201
Query: 207 IYAPLIRDG--RMEKFYWQPNLEDILNIVHRMYEKDGIT 243
A L+ G +EK Y +P L + I H++ E+D +T
Sbjct: 202 -DASLLEPGFEYLEKRYGKPTLGVVPCIEHKLPEEDSLT 239
>sp|Q9Y7X6|ISH1_SCHPO Stress response protein ish1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=ish1 PE=1 SV=1
Length = 684
Score = 35.0 bits (79), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 44/102 (43%), Gaps = 17/102 (16%)
Query: 55 SLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESER 114
S L +KNYI+ + P + + GK K+ Q AGE S++
Sbjct: 214 SHLLRKLKNYISTKADEAQPSVEAV-KGKASEKAKQ----------------AGEFVSDK 256
Query: 115 AGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGN 156
AG+ +L+ E+ A Q + + ++ +I GRFGN
Sbjct: 257 AGDAKELVNEKSSEAGQYAGQKMEEGGELLQEISKRRGRFGN 298
>sp|O05209|VAT_THEAC VCP-like ATPase OS=Thermoplasma acidophilum (strain ATCC 25905 /
DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165) GN=vat
PE=1 SV=1
Length = 745
Score = 34.7 bits (78), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 32/146 (21%), Positives = 61/146 (41%), Gaps = 17/146 (11%)
Query: 79 IWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGK 138
++G G GK+ + + + + E+ S+ GE K IRE ++ A QV
Sbjct: 506 LYGPPGVGKTLLAKAVATESNANFISIKGPEVLSKWVGESEKAIREIFKKAKQVAP---- 561
Query: 139 MSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPII 198
+ + +++ID+ R G T + + +V L+ D ++ N + +I
Sbjct: 562 -AIVFLDEIDSIAPRRGTTSDSGVTERIVNQLLTSLDG------------IEVMNGVVVI 608
Query: 199 FTGNDFSTIYAPLIRDGRMEKFYWQP 224
N + L+R GR +K + P
Sbjct: 609 GATNRPDIMDPALLRAGRFDKLIYIP 634
>sp|P08544|POLG_TMEVB Genome polyprotein OS=Theiler's murine encephalomyelitis virus
(strain BeAn 8386) PE=1 SV=1
Length = 2303
Score = 33.9 bits (76), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
Query: 34 KVTRSFEYLQGDYYIA----PVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSF 89
+ T SF+Y Y +A + +ASL C KN H + P+++ + G GQGKS
Sbjct: 1262 ECTASFKYFDELYNLAVTCKRIPLASL-CEKFKNRHDHSVTRPEPVVVVLRGAAGQGKSV 1320
Query: 90 QTELIFQAMG 99
+++I Q++
Sbjct: 1321 TSQIIAQSVS 1330
>sp|A3CV35|PAN_METMJ Proteasome-activating nucleotidase OS=Methanoculleus marisnigri
(strain ATCC 35101 / DSM 1498 / JR1) GN=pan PE=3 SV=1
Length = 412
Score = 33.9 bits (76), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 58/146 (39%), Gaps = 15/146 (10%)
Query: 79 IWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGK 138
++G G GK+ + + + EL + GE +L+RE + A Q
Sbjct: 192 LYGPPGTGKTLLARAVAHQTNAHFLRVVGSELVQKYIGEGARLVRELFDLAKQRAP---- 247
Query: 139 MSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPII 198
S + I++IDA +G N T ++ V TLM L D + TNRI I+
Sbjct: 248 -SIIFIDEIDA-IGAHRNDSTTSGDREVQRTLMQLLAEMDGFDNRGDVKIVAATNRIDIL 305
Query: 199 FTGNDFSTIYAPLIRDGRMEKFYWQP 224
L+R GR ++ P
Sbjct: 306 DRA---------LLRPGRFDRMIEIP 322
>sp|P13899|POLG_TMEVD Genome polyprotein OS=Theiler's murine encephalomyelitis virus
(strain DA) PE=1 SV=1
Length = 2301
Score = 33.9 bits (76), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
Query: 34 KVTRSFEYLQGDYYIA----PVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSF 89
+ T SF+Y Y +A + +ASL C KN H + P+++ + G GQGKS
Sbjct: 1260 ECTASFKYFDELYNLAVTCKRIPLASL-CEKFKNRHDHSVTRPEPVVVVLRGAAGQGKSV 1318
Query: 90 QTELIFQAMG 99
+++I Q++
Sbjct: 1319 TSQIIAQSVS 1328
>sp|Q9HNP9|PAN2_HALSA Proteasome-activating nucleotidase 2 OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=pan2 PE=3
SV=1
Length = 411
Score = 33.9 bits (76), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 34/157 (21%), Positives = 68/157 (43%), Gaps = 15/157 (9%)
Query: 69 LNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRT 128
+ V+ P + + G G GK+ + + + M+ EL + GE +L+R+ +
Sbjct: 181 VGVEPPSGVLLHGPPGTGKTMLAKAVANQTDASFIKMAGSELVRKFIGEGSRLVRDLFEL 240
Query: 129 ASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRE 188
A Q + + I++IDA + +++ + + ++ + LS+ G D R
Sbjct: 241 A-----EQKDPAIIFIDEIDAVAAKRTDSKTSGDAEVQRTMMQLLSEMD-----GFDER- 289
Query: 189 SDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPN 225
I II N F + + ++R GR ++ PN
Sbjct: 290 ----GDIRIIAATNRFDMLDSAILRPGRFDRLIEVPN 322
>sp|A1WVT8|ARLY_HALHL Argininosuccinate lyase OS=Halorhodospira halophila (strain DSM 244
/ SL1) GN=argH PE=3 SV=1
Length = 465
Score = 33.9 bits (76), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 11/54 (20%)
Query: 218 EKFYWQPNLEDI-LNIVHRMYEKDGIT----------KDEVGSIVKTFPNQALD 260
E+F W P LED+ +NI HR+ ++ G D++ + V+ F +A+D
Sbjct: 81 ERFPWSPQLEDVHMNIEHRLTQRIGEAGKKLHTGRSRNDQIATDVRLFLREAID 134
>sp|Q6B952|YCF46_GRATL Uncharacterized AAA domain-containing protein ycf46 OS=Gracilaria
tenuistipitata var. liui GN=ycf46 PE=3 SV=1
Length = 491
Score = 33.9 bits (76), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 35/160 (21%), Positives = 69/160 (43%), Gaps = 21/160 (13%)
Query: 71 VKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTAS 130
+ VP + + G +G GKS + I + + + G++ + G+ + +R +TA
Sbjct: 257 LTVPKGILLIGIQGTGKSLIAKAISGQWNLPLLKLDMGKIFASLVGQSEERMRHMIKTAE 316
Query: 131 QVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESD 190
Q L I++ID R N + N V+ T++ W S+
Sbjct: 317 Q-----SSPCILWIDEIDKCFTRLNNYTDSGTNGRVLSTMLT-------------WL-SE 357
Query: 191 ITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYW--QPNLED 228
+ +I T N ++ + L+R GR ++ ++ P+LE+
Sbjct: 358 KKKPVFVIATANQVLSLPSELLRKGRFDEIFFLNLPSLEE 397
>sp|P32794|AFG2_YEAST ATPase family gene 2 protein OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=AFG2 PE=1 SV=1
Length = 780
Score = 33.9 bits (76), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 74/174 (42%), Gaps = 22/174 (12%)
Query: 69 LNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRT 128
L + P + ++G G K+ + + GI + + E+ ++ GE + IRE +R
Sbjct: 545 LGISAPKGVLLYGPPGCSKTLTAKALATESGINFLAVKGPEIFNKYVGESERAIREIFRK 604
Query: 129 ASQVVQNQGKMSCLMINDIDA-GLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWR 187
A S + ++IDA R G++ N+ V+ +L+N D +
Sbjct: 605 ARSAAP-----SIIFFDEIDALSPDRDGSSTSAANH--VLTSLLNEIDGVEEL------- 650
Query: 188 ESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYW--QPNLEDILNIVHRMYEK 239
+ I+ N I A L+R GR+++ + P++ L I+ + +K
Sbjct: 651 -----KGVVIVAATNRPDEIDAALLRPGRLDRHIYVGPPDVNARLEILKKCTKK 699
>sp|P08545|POLG_TMEVG Genome polyprotein OS=Theiler's murine encephalomyelitis virus
(strain GDVII) PE=3 SV=2
Length = 2303
Score = 33.5 bits (75), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Query: 34 KVTRSFEYLQGDYYIA----PVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSF 89
+ T SF+Y Y +A + +ASL C KN H + P++ + G GQGKS
Sbjct: 1262 ECTASFKYFDDLYNLAVTCKRIPLASL-CEKFKNRHDHSVTRPEPVVAVLRGAAGQGKSV 1320
Query: 90 QTELIFQAMG 99
+++I Q++
Sbjct: 1321 TSQIIAQSVS 1330
>sp|Q90732|PRS4_CHICK 26S protease regulatory subunit 4 OS=Gallus gallus GN=PSMC1 PE=2
SV=1
Length = 440
Score = 33.5 bits (75), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 80/187 (42%), Gaps = 25/187 (13%)
Query: 69 LNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRT 128
+ +K P + ++G G GK+ + + + + EL + G+ KL+RE +R
Sbjct: 214 MGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRV 273
Query: 129 ASQVVQNQGKMSCLMINDIDA-GLGRF-GNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDW 186
A + G S + I++IDA G R+ N+ Q + L+N D G D
Sbjct: 274 A----EEHGP-SIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLD-------GFDS 321
Query: 187 RESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLED-----ILNI-VHRMYEKD 240
R + +I N T+ LIR GR+++ P ++ I I RM D
Sbjct: 322 R-----GDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKRIFQIHTSRMTLAD 376
Query: 241 GITKDEV 247
+T DE+
Sbjct: 377 DVTLDEL 383
>sp|A6UQT3|PAN_METVS Proteasome-activating nucleotidase OS=Methanococcus vannielii
(strain SB / ATCC 35089 / DSM 1224) GN=pan PE=3 SV=1
Length = 407
Score = 33.1 bits (74), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 82/189 (43%), Gaps = 20/189 (10%)
Query: 79 IWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGK 138
++G G GK+ + + + V + EL + GE KL+R+ ++ A + K
Sbjct: 187 LYGPPGTGKTLLAKAVARETNASFVRVVGSELVKKFIGEGAKLVRDVFKLAKE------K 240
Query: 139 MSCLM-INDIDAGLGRFGNTQMTVNNQIVVGTLMNLS------DNPTRVSIGQDWRESDI 191
C++ I++IDA + + +T ++ V TLM L D+ V I DI
Sbjct: 241 SPCIIFIDEIDAVASKRTES-LTGGDREVQRTLMQLLAEMDGFDSRGDVKIIAATNRPDI 299
Query: 192 TNRIPIIFTGNDFSTI--YAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITKDEVGS 249
+ P I F I A DGR+E F + +I ++ R K + ++ VG+
Sbjct: 300 LD--PAILRPGRFDRIIEIAAPDEDGRLEIFKIHTDKMNIKSVDLREIAK--MAENMVGA 355
Query: 250 IVKTFPNQA 258
+K +A
Sbjct: 356 DIKAVCTEA 364
>sp|P62193|PRS4_RAT 26S protease regulatory subunit 4 OS=Rattus norvegicus GN=Psmc1
PE=2 SV=1
Length = 440
Score = 33.1 bits (74), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 66/153 (43%), Gaps = 19/153 (12%)
Query: 69 LNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRT 128
+ +K P + ++G G GK+ + + + + EL + G+ KL+RE +R
Sbjct: 214 MGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRV 273
Query: 129 ASQVVQNQGKMSCLMINDIDA-GLGRF-GNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDW 186
A + S + I++IDA G R+ N+ Q + L+N D G D
Sbjct: 274 AEEHAP-----SIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLD-------GFDS 321
Query: 187 RESDITNRIPIIFTGNDFSTIYAPLIRDGRMEK 219
R + +I N T+ LIR GR+++
Sbjct: 322 R-----GDVKVIMATNRIETLDPALIRPGRIDR 349
>sp|P62192|PRS4_MOUSE 26S protease regulatory subunit 4 OS=Mus musculus GN=Psmc1 PE=1
SV=1
Length = 440
Score = 33.1 bits (74), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 66/153 (43%), Gaps = 19/153 (12%)
Query: 69 LNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRT 128
+ +K P + ++G G GK+ + + + + EL + G+ KL+RE +R
Sbjct: 214 MGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRV 273
Query: 129 ASQVVQNQGKMSCLMINDIDA-GLGRF-GNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDW 186
A + S + I++IDA G R+ N+ Q + L+N D G D
Sbjct: 274 AEEHAP-----SIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLD-------GFDS 321
Query: 187 RESDITNRIPIIFTGNDFSTIYAPLIRDGRMEK 219
R + +I N T+ LIR GR+++
Sbjct: 322 R-----GDVKVIMATNRIETLDPALIRPGRIDR 349
>sp|P62191|PRS4_HUMAN 26S protease regulatory subunit 4 OS=Homo sapiens GN=PSMC1 PE=1
SV=1
Length = 440
Score = 33.1 bits (74), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 66/153 (43%), Gaps = 19/153 (12%)
Query: 69 LNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRT 128
+ +K P + ++G G GK+ + + + + EL + G+ KL+RE +R
Sbjct: 214 MGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRV 273
Query: 129 ASQVVQNQGKMSCLMINDIDA-GLGRF-GNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDW 186
A + S + I++IDA G R+ N+ Q + L+N D G D
Sbjct: 274 AEEHAP-----SIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLD-------GFDS 321
Query: 187 RESDITNRIPIIFTGNDFSTIYAPLIRDGRMEK 219
R + +I N T+ LIR GR+++
Sbjct: 322 R-----GDVKVIMATNRIETLDPALIRPGRIDR 349
>sp|Q3Z717|SYR_DEHE1 Arginine--tRNA ligase OS=Dehalococcoides ethenogenes (strain 195)
GN=argS PE=3 SV=1
Length = 556
Score = 33.1 bits (74), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 42/97 (43%), Gaps = 9/97 (9%)
Query: 50 PVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGE 109
P + AS + + +I K ++ IWG QG + + + A+GI P ++
Sbjct: 315 PTYFASDIAYHYNKFIER----KFDRVINIWGADHQGHVSRMKAMLSALGINPERLTTLL 370
Query: 110 LESERAGEPGKLIRERYRTA-----SQVVQNQGKMSC 141
+ G+L+R RT S+V++ G +C
Sbjct: 371 FQMITLKRGGELVRLSKRTGEMISLSEVIEEVGADAC 407
>sp|Q55BV5|PRS4_DICDI 26S protease regulatory subunit 4 homolog OS=Dictyostelium
discoideum GN=psmC1 PE=1 SV=1
Length = 439
Score = 33.1 bits (74), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 72/164 (43%), Gaps = 22/164 (13%)
Query: 69 LNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRT 128
+ +K P + ++G G GK+ + + + + EL + G+ KL+RE +R
Sbjct: 213 IGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRV 272
Query: 129 ASQVVQNQGKMSCLMINDIDA-GLGRFGNTQMTVNNQI--VVGTLMNLSDNPTRVSIGQD 185
A + S + I++IDA G R+ ++Q +I + L+N D G D
Sbjct: 273 ADECAP-----SIVFIDEIDAVGTKRY-DSQSGGEREIQRTMLELLNQLD-------GFD 319
Query: 186 WRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDI 229
R + +I N T+ LIR GR+++ P L DI
Sbjct: 320 ARTD-----VKVIMATNRIETLDPALIRPGRIDRKIEFP-LPDI 357
>sp|O14325|YB7A_SCHPO Uncharacterized AAA domain-containing protein C16E9.10c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC16E9.10c PE=1 SV=1
Length = 779
Score = 33.1 bits (74), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 45/98 (45%), Gaps = 7/98 (7%)
Query: 79 IWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGK 138
+ G G GK+ + +G+ + +SA + S +GE K +RE + A +
Sbjct: 213 LHGPPGCGKTMLANALANELGVPFISISAPSIVSGMSGESEKKVREVFEEAKSLA----- 267
Query: 139 MSCLM-INDIDAGLGRFGNTQMTVNNQIVVGTLMNLSD 175
CLM I++IDA + + Q + +IV L + +
Sbjct: 268 -PCLMFIDEIDAVTPKRESAQREMERRIVAQFLTCMDE 304
>sp|P48601|PRS4_DROME 26S protease regulatory subunit 4 OS=Drosophila melanogaster
GN=Pros26.4 PE=2 SV=2
Length = 439
Score = 32.7 bits (73), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 66/153 (43%), Gaps = 19/153 (12%)
Query: 69 LNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRT 128
+ +K P + ++G G GK+ + + + + EL + G+ KL+RE +R
Sbjct: 213 MGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRV 272
Query: 129 ASQVVQNQGKMSCLMINDIDA-GLGRF-GNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDW 186
A + S + I++IDA G R+ N+ Q + L+N D G D
Sbjct: 273 AEEHAP-----SIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLD-------GFDS 320
Query: 187 RESDITNRIPIIFTGNDFSTIYAPLIRDGRMEK 219
R + +I N T+ LIR GR+++
Sbjct: 321 R-----GDVKVIMATNRIETLDPALIRPGRIDR 348
>sp|D4GUJ7|PAN1_HALVD Proteasome-activating nucleotidase 1 OS=Haloferax volcanii (strain
ATCC 29605 / DSM 3757 / JCM 8879 / NBRC 14742 / NCIMB
2012 / VKM B-1768 / DS2) GN=pan1 PE=2 SV=2
Length = 406
Score = 32.7 bits (73), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 75/171 (43%), Gaps = 18/171 (10%)
Query: 79 IWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGK 138
++G G GK+ + + + M+ EL + GE KL+R+ + A + +
Sbjct: 189 LYGPPGTGKTMLAKAVANQTNASFIKMAGSELVHKFIGEGAKLVRDLFEVA-----RENE 243
Query: 139 MSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPII 198
+ + I++IDA + +++ T + V T+M L G D R I II
Sbjct: 244 PAVIFIDEIDAIASKRTDSK-TSGDAEVQRTMMQLLAEMD----GFDER-----GNIRII 293
Query: 199 FTGNDFSTIYAPLIRDGRMEKFYW--QPNLEDILNIVHRMYEKDGITKDEV 247
N F + ++R GR ++ +PN ED I+ +++ + D+V
Sbjct: 294 AATNRFDMLDPAILRPGRFDRLIEVPKPN-EDGREIIFQIHTRKMNVSDDV 343
>sp|O74445|PRS10_SCHPO Probable 26S protease subunit rpt4 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=rpt4 PE=3 SV=2
Length = 388
Score = 32.3 bits (72), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 33/151 (21%), Positives = 69/151 (45%), Gaps = 15/151 (9%)
Query: 69 LNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRT 128
+ +K P + ++G G GK+ + ++G+ + + + + + GE ++IRE +
Sbjct: 161 VGIKPPKGVLLYGPPGTGKTLLARAVAASLGVNFLKVVSSAIVDKYIGESARIIREMFGY 220
Query: 129 ASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRE 188
A + + + +++IDA GR + + + +I TLM L + G D+
Sbjct: 221 A-----KEHEPCVIFMDEIDAIGGRRFSEGTSADREI-QRTLMELLNQMD----GFDY-- 268
Query: 189 SDITNRIPIIFTGNDFSTIYAPLIRDGRMEK 219
+ II N T+ L+R GR+++
Sbjct: 269 ---LGQTKIIMATNRPDTLDPALLRPGRLDR 296
>sp|Q09803|VPS4_SCHPO Suppressor protein of bem1/bed5 double mutants
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=vps4 PE=3 SV=1
Length = 432
Score = 32.3 bits (72), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 44/92 (47%), Gaps = 15/92 (16%)
Query: 68 LLNVKVPLILG----------IWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGE 117
LL +K+P + ++G G GKS+ + + G +S+ +L S+ GE
Sbjct: 146 LLPIKLPQLFSHGRKPWSGILLYGPPGTGKSYLAKAVATEAGSTFFSISSSDLVSKWMGE 205
Query: 118 PGKLIRERYRTASQVVQNQGKMSCLMINDIDA 149
+L+R+ + A + K S + I++ID+
Sbjct: 206 SERLVRQLFEMA-----REQKPSIIFIDEIDS 232
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.139 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 129,967,483
Number of Sequences: 539616
Number of extensions: 5736706
Number of successful extensions: 15266
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 60
Number of HSP's that attempted gapping in prelim test: 15122
Number of HSP's gapped (non-prelim): 92
length of query: 342
length of database: 191,569,459
effective HSP length: 118
effective length of query: 224
effective length of database: 127,894,771
effective search space: 28648428704
effective search space used: 28648428704
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)