Query 019334
Match_columns 342
No_of_seqs 225 out of 644
Neff 4.6
Searched_HMMs 46136
Date Fri Mar 29 08:37:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019334.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019334hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00020 ribulose bisphosphate 100.0 6E-111 1E-115 827.6 32.7 332 7-342 80-413 (413)
2 KOG0651 26S proteasome regulat 100.0 2.5E-73 5.4E-78 548.3 14.2 293 2-339 91-388 (388)
3 COG1222 RPT1 ATP-dependent 26S 100.0 3.6E-53 7.8E-58 414.2 15.9 197 68-281 179-389 (406)
4 KOG0730 AAA+-type ATPase [Post 100.0 4E-50 8.8E-55 414.0 16.7 210 50-281 431-656 (693)
5 KOG0733 Nuclear AAA ATPase (VC 100.0 2.5E-49 5.4E-54 405.7 18.4 254 51-336 509-788 (802)
6 KOG0733 Nuclear AAA ATPase (VC 100.0 4.4E-48 9.6E-53 396.6 16.6 177 68-258 217-399 (802)
7 KOG0736 Peroxisome assembly fa 100.0 4.7E-45 1E-49 380.9 21.9 266 32-326 650-941 (953)
8 KOG0727 26S proteasome regulat 100.0 3.1E-44 6.7E-49 341.0 11.9 214 51-281 153-393 (408)
9 KOG0735 AAA+-type ATPase [Post 100.0 1.3E-42 2.8E-47 360.6 17.6 214 51-289 665-900 (952)
10 CHL00195 ycf46 Ycf46; Provisio 100.0 1.5E-40 3.2E-45 338.2 19.4 178 43-240 218-408 (489)
11 COG0464 SpoVK ATPases of the A 100.0 4.9E-40 1.1E-44 330.6 20.8 213 47-281 236-466 (494)
12 KOG0726 26S proteasome regulat 100.0 2.4E-41 5.1E-46 325.7 10.2 197 69-281 214-423 (440)
13 KOG0652 26S proteasome regulat 100.0 8.4E-41 1.8E-45 318.7 11.7 183 68-266 199-394 (424)
14 KOG0728 26S proteasome regulat 100.0 5.5E-40 1.2E-44 311.8 16.9 197 68-281 175-385 (404)
15 KOG0734 AAA+-type ATPase conta 100.0 2.9E-40 6.2E-45 335.6 14.8 190 51-259 302-510 (752)
16 KOG0729 26S proteasome regulat 100.0 1.6E-40 3.4E-45 317.6 11.1 197 68-281 205-415 (435)
17 KOG0738 AAA+-type ATPase [Post 100.0 2E-39 4.3E-44 320.4 15.4 201 51-273 210-428 (491)
18 KOG0731 AAA+-type ATPase conta 100.0 1.6E-38 3.4E-43 334.4 17.3 191 51-259 309-522 (774)
19 COG0465 HflB ATP-dependent Zn 100.0 6E-38 1.3E-42 324.1 17.9 246 50-322 147-420 (596)
20 TIGR01243 CDC48 AAA family ATP 100.0 3.7E-37 8.1E-42 324.5 19.7 209 51-280 451-675 (733)
21 TIGR03689 pup_AAA proteasome A 100.0 8E-36 1.7E-40 305.0 19.5 259 45-336 174-494 (512)
22 PTZ00454 26S protease regulato 100.0 4.3E-35 9.3E-40 291.5 20.6 208 47-278 139-367 (398)
23 KOG0739 AAA+-type ATPase [Post 100.0 3.1E-36 6.8E-41 290.9 10.9 192 51-261 131-341 (439)
24 CHL00206 ycf2 Ycf2; Provisiona 100.0 7.5E-36 1.6E-40 333.1 13.4 170 69-259 1625-1846(2281)
25 PRK03992 proteasome-activating 100.0 1.6E-34 3.4E-39 285.4 20.6 188 68-279 159-354 (389)
26 KOG0741 AAA+-type ATPase [Post 100.0 6.8E-36 1.5E-40 303.6 9.1 180 68-260 250-445 (744)
27 TIGR01241 FtsH_fam ATP-depende 100.0 3.5E-34 7.6E-39 289.8 20.7 189 47-252 49-254 (495)
28 KOG0737 AAA+-type ATPase [Post 100.0 1.9E-35 4E-40 290.2 9.3 200 42-259 81-300 (386)
29 KOG0730 AAA+-type ATPase [Post 100.0 3.8E-34 8.3E-39 295.9 17.1 187 68-278 212-402 (693)
30 PTZ00361 26 proteosome regulat 100.0 9.8E-34 2.1E-38 285.1 18.1 195 47-258 177-392 (438)
31 CHL00176 ftsH cell division pr 100.0 4.1E-32 9E-37 283.9 19.9 187 49-252 179-382 (638)
32 TIGR01242 26Sp45 26S proteasom 100.0 7.1E-32 1.5E-36 262.7 18.2 187 68-278 150-344 (364)
33 COG1223 Predicted ATPase (AAA+ 100.0 2E-32 4.3E-37 260.9 12.4 189 50-259 118-323 (368)
34 KOG0732 AAA+-type ATPase conta 100.0 5.6E-32 1.2E-36 291.6 17.1 192 52-261 264-480 (1080)
35 PRK10733 hflB ATP-dependent me 100.0 2.2E-31 4.8E-36 278.3 19.6 209 50-279 149-374 (644)
36 TIGR01243 CDC48 AAA family ATP 100.0 4E-29 8.6E-34 263.8 19.0 172 68-257 206-383 (733)
37 KOG0740 AAA+-type ATPase [Post 100.0 5.8E-30 1.3E-34 256.5 10.0 191 51-260 151-361 (428)
38 PF00004 AAA: ATPase family as 100.0 1.1E-28 2.4E-33 201.1 9.6 131 77-224 1-131 (132)
39 KOG0744 AAA+-type ATPase [Post 99.9 3.8E-22 8.2E-27 194.9 13.9 274 22-324 120-422 (423)
40 CHL00181 cbbX CbbX; Provisiona 99.8 1.8E-19 3.9E-24 172.4 16.2 152 74-252 59-226 (287)
41 TIGR02881 spore_V_K stage V sp 99.8 2.1E-19 4.6E-24 167.8 15.3 151 74-252 42-208 (261)
42 KOG0743 AAA+-type ATPase [Post 99.8 1.2E-19 2.7E-24 182.5 12.7 184 48-254 196-402 (457)
43 TIGR02880 cbbX_cfxQ probable R 99.8 4.8E-19 1E-23 168.8 15.7 152 74-252 58-225 (284)
44 COG0464 SpoVK ATPases of the A 99.8 5.5E-19 1.2E-23 178.3 15.7 186 68-280 12-203 (494)
45 TIGR00763 lon ATP-dependent pr 99.8 4.2E-18 9.2E-23 181.8 20.3 163 75-255 348-535 (775)
46 TIGR02639 ClpA ATP-dependent C 99.8 1.1E-18 2.4E-23 185.1 15.0 167 71-263 200-399 (731)
47 PRK11034 clpA ATP-dependent Cl 99.7 3.3E-17 7.2E-22 175.0 13.1 186 51-262 167-402 (758)
48 PRK10865 protein disaggregatio 99.7 1.1E-16 2.5E-21 172.8 14.5 154 72-251 197-374 (857)
49 TIGR03345 VI_ClpV1 type VI sec 99.7 1.8E-16 3.9E-21 171.3 14.7 165 72-262 206-403 (852)
50 TIGR03346 chaperone_ClpB ATP-d 99.7 2.9E-16 6.4E-21 169.3 15.4 166 72-263 192-390 (852)
51 PRK00080 ruvB Holliday junctio 99.7 8.5E-16 1.9E-20 147.9 16.3 188 44-258 16-216 (328)
52 KOG0742 AAA+-type ATPase [Post 99.7 3.1E-16 6.8E-21 157.5 13.3 175 40-237 351-528 (630)
53 PRK04195 replication factor C 99.7 3.5E-15 7.6E-20 151.3 18.5 178 47-256 8-194 (482)
54 CHL00095 clpC Clp protease ATP 99.7 1.3E-15 2.7E-20 163.8 15.5 185 51-262 160-394 (821)
55 TIGR00635 ruvB Holliday juncti 99.6 7.2E-15 1.6E-19 138.5 14.8 158 72-256 28-193 (305)
56 PHA02544 44 clamp loader, smal 99.6 2.3E-14 5E-19 135.7 16.0 175 45-253 13-198 (316)
57 TIGR00390 hslU ATP-dependent p 99.6 4.4E-15 9.6E-20 149.9 11.6 156 72-233 45-342 (441)
58 PRK10787 DNA-binding ATP-depen 99.6 5.8E-14 1.3E-18 150.8 19.8 162 75-254 350-535 (784)
59 TIGR02640 gas_vesic_GvpN gas v 99.6 5.7E-14 1.2E-18 132.1 16.9 159 75-251 22-209 (262)
60 PRK05201 hslU ATP-dependent pr 99.6 1.3E-14 2.8E-19 146.6 12.8 155 73-233 49-344 (443)
61 PRK12402 replication factor C 99.6 5.9E-14 1.3E-18 132.8 15.8 183 46-256 8-218 (337)
62 KOG0736 Peroxisome assembly fa 99.6 2.3E-14 5E-19 151.9 13.6 163 72-252 429-607 (953)
63 PRK05342 clpX ATP-dependent pr 99.5 1.5E-14 3.2E-19 145.4 10.2 101 75-176 109-213 (412)
64 PRK13342 recombination factor 99.5 3.5E-13 7.5E-18 134.3 17.4 154 61-256 27-188 (413)
65 TIGR00382 clpX endopeptidase C 99.5 5.3E-14 1.2E-18 141.6 10.4 101 75-176 117-221 (413)
66 PRK06893 DNA replication initi 99.5 1.6E-13 3.5E-18 126.5 11.3 145 75-257 40-196 (229)
67 TIGR00362 DnaA chromosomal rep 99.5 1.9E-13 4.1E-18 135.2 12.0 181 53-266 117-312 (405)
68 PRK00149 dnaA chromosomal repl 99.5 2.8E-13 6E-18 136.2 13.1 180 54-266 130-324 (450)
69 PRK14962 DNA polymerase III su 99.5 6.4E-13 1.4E-17 135.7 15.4 147 71-252 33-206 (472)
70 KOG0735 AAA+-type ATPase [Post 99.5 2.2E-13 4.8E-18 143.6 12.3 152 72-239 429-588 (952)
71 PRK00411 cdc6 cell division co 99.5 7.1E-13 1.5E-17 129.0 14.6 187 41-251 21-238 (394)
72 TIGR02928 orc1/cdc6 family rep 99.5 1.1E-12 2.3E-17 126.3 15.2 170 43-238 8-213 (365)
73 PLN03025 replication factor C 99.5 1.2E-12 2.6E-17 125.8 15.5 175 47-256 7-192 (319)
74 PF05496 RuvB_N: Holliday junc 99.5 7E-13 1.5E-17 124.7 12.8 141 73-241 49-196 (233)
75 PF07728 AAA_5: AAA domain (dy 99.4 2.7E-14 5.8E-19 119.9 2.1 120 76-217 1-139 (139)
76 cd00009 AAA The AAA+ (ATPases 99.4 1.4E-12 3.1E-17 104.7 10.9 129 72-224 17-150 (151)
77 PRK14956 DNA polymerase III su 99.4 6E-12 1.3E-16 129.0 16.5 167 47-251 12-209 (484)
78 KOG2004 Mitochondrial ATP-depe 99.4 6.7E-12 1.5E-16 132.7 17.1 173 44-238 411-597 (906)
79 PRK07940 DNA polymerase III su 99.4 3.1E-12 6.7E-17 128.0 13.6 167 51-251 3-200 (394)
80 PRK11034 clpA ATP-dependent Cl 99.4 1.5E-12 3.2E-17 139.7 12.1 146 72-238 485-667 (758)
81 TIGR02639 ClpA ATP-dependent C 99.4 3.8E-12 8.3E-17 135.5 14.8 164 49-238 459-663 (731)
82 PRK14086 dnaA chromosomal repl 99.4 1.6E-12 3.5E-17 136.4 11.6 169 56-257 298-481 (617)
83 smart00382 AAA ATPases associa 99.4 2.1E-12 4.6E-17 102.1 9.2 126 74-223 2-144 (148)
84 COG0466 Lon ATP-dependent Lon 99.4 5.5E-12 1.2E-16 133.4 14.6 151 70-238 347-509 (782)
85 TIGR02397 dnaX_nterm DNA polym 99.4 7.5E-12 1.6E-16 119.8 14.2 175 47-256 8-210 (355)
86 PRK14970 DNA polymerase III su 99.4 9.4E-12 2E-16 121.2 15.0 179 47-255 11-200 (367)
87 PRK13341 recombination factor 99.4 1.2E-11 2.7E-16 132.1 17.0 146 74-256 52-209 (725)
88 PRK14961 DNA polymerase III su 99.4 9.9E-12 2.1E-16 122.1 15.1 178 47-253 10-209 (363)
89 PF07724 AAA_2: AAA domain (Cd 99.4 4.8E-13 1E-17 119.5 4.7 129 75-210 4-136 (171)
90 COG2256 MGS1 ATPase related to 99.4 8E-12 1.7E-16 125.4 13.5 152 36-235 20-174 (436)
91 PRK00440 rfc replication facto 99.4 2.6E-11 5.6E-16 113.8 16.2 147 76-256 40-195 (319)
92 PRK05563 DNA polymerase III su 99.3 2.5E-11 5.3E-16 126.3 17.0 176 31-253 7-209 (559)
93 PRK06645 DNA polymerase III su 99.3 2.1E-11 4.5E-16 125.8 16.0 177 47-252 15-217 (507)
94 TIGR03420 DnaA_homol_Hda DnaA 99.3 1.4E-11 3.1E-16 110.6 12.5 162 55-258 23-195 (226)
95 PRK07003 DNA polymerase III su 99.3 2.8E-11 6E-16 129.7 16.3 170 48-252 11-208 (830)
96 PRK14960 DNA polymerase III su 99.3 2.3E-11 5.1E-16 128.7 15.5 175 31-252 6-207 (702)
97 TIGR02902 spore_lonB ATP-depen 99.3 1.5E-11 3.3E-16 127.0 13.8 190 43-251 55-292 (531)
98 PRK12422 chromosomal replicati 99.3 1.2E-11 2.7E-16 125.4 12.5 182 54-266 119-315 (445)
99 PRK08691 DNA polymerase III su 99.3 2.6E-11 5.7E-16 128.8 15.4 179 47-254 10-210 (709)
100 PRK12323 DNA polymerase III su 99.3 2.3E-11 4.9E-16 128.7 14.7 148 70-252 34-213 (700)
101 PRK14963 DNA polymerase III su 99.3 5.7E-11 1.2E-15 122.3 16.5 170 47-251 8-204 (504)
102 TIGR01650 PD_CobS cobaltochela 99.3 6.3E-12 1.4E-16 123.5 8.7 146 74-237 64-233 (327)
103 PRK14088 dnaA chromosomal repl 99.3 1.1E-11 2.4E-16 125.2 10.7 166 54-256 113-297 (440)
104 PRK08084 DNA replication initi 99.3 2.9E-11 6.2E-16 112.2 12.5 161 54-257 29-202 (235)
105 TIGR02903 spore_lon_C ATP-depe 99.3 7.8E-11 1.7E-15 123.8 16.7 195 40-254 141-384 (615)
106 PRK14958 DNA polymerase III su 99.3 5.4E-11 1.2E-15 122.6 14.6 147 71-252 35-208 (509)
107 PRK11331 5-methylcytosine-spec 99.3 1.5E-11 3.3E-16 125.3 10.3 137 74-226 194-359 (459)
108 PTZ00112 origin recognition co 99.2 1.6E-10 3.4E-15 125.4 16.6 151 75-251 782-965 (1164)
109 PRK14959 DNA polymerase III su 99.2 1.5E-10 3.2E-15 122.0 15.2 171 47-252 10-208 (624)
110 TIGR00678 holB DNA polymerase 99.2 2.8E-10 6.1E-15 100.9 14.7 147 72-256 12-183 (188)
111 PRK14969 DNA polymerase III su 99.2 2.2E-10 4.8E-15 118.5 14.8 147 71-252 35-208 (527)
112 PRK14087 dnaA chromosomal repl 99.2 1.3E-10 2.8E-15 118.1 12.8 191 42-265 113-320 (450)
113 PRK14964 DNA polymerase III su 99.2 2.5E-10 5.3E-15 117.6 14.9 171 47-252 7-205 (491)
114 PRK05642 DNA replication initi 99.2 2.3E-10 4.9E-15 106.3 13.3 161 55-256 27-200 (234)
115 PRK06305 DNA polymerase III su 99.2 4.1E-10 8.8E-15 114.4 16.3 173 47-254 11-212 (451)
116 COG0714 MoxR-like ATPases [Gen 99.2 1.5E-11 3.3E-16 118.7 5.8 146 75-237 44-203 (329)
117 PRK07764 DNA polymerase III su 99.2 3.1E-10 6.6E-15 123.0 16.2 171 47-252 9-209 (824)
118 PRK05896 DNA polymerase III su 99.2 2.2E-10 4.8E-15 120.3 14.6 150 71-255 35-211 (605)
119 PRK14949 DNA polymerase III su 99.2 3E-10 6.5E-15 123.5 16.0 180 31-252 7-208 (944)
120 PRK14953 DNA polymerase III su 99.2 3.6E-10 7.9E-15 115.9 15.3 177 47-252 10-208 (486)
121 PRK07994 DNA polymerase III su 99.2 4.3E-10 9.4E-15 119.0 16.0 169 48-251 11-207 (647)
122 PRK14957 DNA polymerase III su 99.2 6.7E-10 1.4E-14 115.7 16.6 171 47-252 10-208 (546)
123 TIGR03345 VI_ClpV1 type VI sec 99.2 2.4E-10 5.2E-15 124.2 13.7 114 71-206 592-721 (852)
124 PRK08727 hypothetical protein; 99.2 2E-10 4.3E-15 106.5 11.0 144 73-256 40-196 (233)
125 COG1219 ClpX ATP-dependent pro 99.2 1.1E-10 2.4E-15 114.9 9.7 101 76-176 99-202 (408)
126 PRK07133 DNA polymerase III su 99.2 4.6E-10 9.9E-15 120.0 15.0 176 47-251 12-206 (725)
127 PRK14965 DNA polymerase III su 99.2 4.5E-10 9.8E-15 117.2 14.6 174 31-251 7-207 (576)
128 PRK14951 DNA polymerase III su 99.1 7.6E-10 1.6E-14 116.7 15.7 179 31-256 7-217 (618)
129 COG2255 RuvB Holliday junction 99.1 1.2E-09 2.6E-14 106.2 15.6 172 49-251 22-210 (332)
130 CHL00095 clpC Clp protease ATP 99.1 5.7E-10 1.2E-14 120.5 14.3 135 49-205 514-663 (821)
131 PRK06647 DNA polymerase III su 99.1 1.2E-09 2.6E-14 114.0 16.2 174 31-251 7-207 (563)
132 PRK14948 DNA polymerase III su 99.1 1.1E-09 2.3E-14 115.5 15.5 180 46-254 9-212 (620)
133 PRK06620 hypothetical protein; 99.1 5.7E-10 1.2E-14 102.8 11.8 148 56-257 26-182 (214)
134 PRK08116 hypothetical protein; 99.1 4.3E-10 9.4E-15 106.9 11.2 118 57-204 96-221 (268)
135 PF00308 Bac_DnaA: Bacterial d 99.1 2.3E-10 5E-15 105.5 9.1 174 54-265 16-209 (219)
136 PHA02244 ATPase-like protein 99.1 1.4E-09 3E-14 108.9 15.1 134 75-233 120-269 (383)
137 PRK08903 DnaA regulatory inact 99.1 1.1E-09 2.4E-14 99.6 13.3 153 57-257 28-192 (227)
138 PRK14955 DNA polymerase III su 99.1 8.8E-10 1.9E-14 109.7 13.7 175 47-251 10-215 (397)
139 KOG0745 Putative ATP-dependent 99.1 3.4E-10 7.3E-15 115.0 10.1 142 76-221 228-380 (564)
140 PRK14950 DNA polymerase III su 99.1 2E-09 4.2E-14 112.5 16.0 181 47-256 10-213 (585)
141 KOG1969 DNA replication checkp 99.1 3.6E-09 7.8E-14 112.6 16.0 132 75-230 327-473 (877)
142 KOG0989 Replication factor C, 99.1 1.9E-09 4.1E-14 105.6 12.9 172 46-251 29-217 (346)
143 COG1220 HslU ATP-dependent pro 99.1 3.2E-09 6.9E-14 105.5 14.5 131 137-273 249-402 (444)
144 PRK12377 putative replication 99.0 9.1E-10 2E-14 104.3 9.6 113 57-204 86-206 (248)
145 PRK14952 DNA polymerase III su 99.0 5.5E-09 1.2E-13 109.6 15.8 164 31-241 4-194 (584)
146 KOG0741 AAA+-type ATPase [Post 99.0 1.4E-09 3E-14 112.7 11.0 154 69-251 533-697 (744)
147 TIGR03346 chaperone_ClpB ATP-d 99.0 3.6E-09 7.8E-14 114.9 14.5 143 75-238 596-777 (852)
148 PRK09111 DNA polymerase III su 99.0 7.6E-09 1.7E-13 108.8 15.9 176 47-251 18-220 (598)
149 PRK14954 DNA polymerase III su 99.0 7.2E-09 1.6E-13 109.4 15.8 153 71-252 35-216 (620)
150 PRK10865 protein disaggregatio 99.0 3.2E-09 7E-14 115.5 13.3 147 71-238 594-780 (857)
151 PRK13407 bchI magnesium chelat 99.0 3.7E-09 8.1E-14 104.1 10.9 169 49-237 4-216 (334)
152 PRK06921 hypothetical protein; 98.9 5.3E-09 1.2E-13 99.5 10.2 84 58-149 99-188 (266)
153 KOG2028 ATPase related to the 98.9 3.4E-09 7.3E-14 106.3 8.9 80 60-150 152-234 (554)
154 PRK08451 DNA polymerase III su 98.9 2.6E-08 5.6E-13 103.7 15.5 171 47-252 8-206 (535)
155 PRK07952 DNA replication prote 98.9 3.9E-09 8.4E-14 99.8 8.6 116 57-204 84-205 (244)
156 PRK09087 hypothetical protein; 98.9 1.3E-08 2.8E-13 94.5 11.6 146 57-256 32-187 (226)
157 COG0470 HolB ATPase involved i 98.9 5.2E-08 1.1E-12 91.4 15.0 119 72-224 22-167 (325)
158 COG0542 clpA ATP-binding subun 98.9 2.8E-08 6E-13 107.0 14.4 166 72-263 189-387 (786)
159 CHL00081 chlI Mg-protoporyphyr 98.8 1.7E-08 3.8E-13 100.1 11.0 167 51-236 15-231 (350)
160 PRK06835 DNA replication prote 98.8 1.6E-08 3.6E-13 99.3 10.6 116 57-204 168-289 (329)
161 PF07726 AAA_3: ATPase family 98.8 7.6E-10 1.7E-14 96.3 0.7 115 77-212 2-126 (131)
162 PRK08181 transposase; Validate 98.8 1E-08 2.3E-13 98.1 8.3 111 57-204 95-209 (269)
163 TIGR00602 rad24 checkpoint pro 98.8 6.2E-08 1.3E-12 102.7 14.9 182 46-252 77-311 (637)
164 TIGR02442 Cob-chelat-sub cobal 98.8 3.4E-08 7.4E-13 104.2 12.8 165 52-236 3-213 (633)
165 PF05673 DUF815: Protein of un 98.8 9.3E-08 2E-12 91.2 14.3 105 71-210 49-157 (249)
166 PRK08939 primosomal protein Dn 98.8 3.8E-08 8.1E-13 95.7 11.5 85 57-150 139-229 (306)
167 PRK14971 DNA polymerase III su 98.8 1.3E-07 2.8E-12 99.9 16.2 171 47-252 11-210 (614)
168 PRK09112 DNA polymerase III su 98.8 2.1E-07 4.6E-12 92.1 16.8 181 43-252 13-228 (351)
169 COG1474 CDC6 Cdc6-related prot 98.8 6.6E-08 1.4E-12 96.3 12.4 167 42-235 9-201 (366)
170 TIGR03015 pepcterm_ATPase puta 98.7 4.6E-07 1E-11 83.5 16.3 160 72-258 41-232 (269)
171 TIGR02031 BchD-ChlD magnesium 98.7 5.1E-08 1.1E-12 102.3 11.0 156 62-237 4-174 (589)
172 PRK06526 transposase; Provisio 98.7 1.3E-08 2.9E-13 96.4 5.7 73 72-151 96-172 (254)
173 PRK05564 DNA polymerase III su 98.7 2.1E-07 4.5E-12 89.4 14.0 170 52-252 3-178 (313)
174 PRK07471 DNA polymerase III su 98.7 3.7E-07 8E-12 90.9 15.7 165 44-237 10-213 (365)
175 TIGR02030 BchI-ChlI magnesium 98.7 3.6E-08 7.7E-13 97.3 8.3 166 52-237 3-219 (337)
176 smart00350 MCM minichromosome 98.7 2.8E-08 6.1E-13 102.3 5.9 139 76-238 238-401 (509)
177 cd01120 RecA-like_NTPases RecA 98.7 1.7E-07 3.8E-12 77.7 9.5 73 77-152 2-99 (165)
178 PRK13531 regulatory ATPase Rav 98.6 7.4E-08 1.6E-12 99.4 8.2 150 75-253 40-218 (498)
179 PRK09183 transposase/IS protei 98.6 3.9E-08 8.4E-13 93.1 5.6 73 72-150 100-176 (259)
180 PF13401 AAA_22: AAA domain; P 98.6 2.1E-07 4.5E-12 76.4 9.2 99 74-203 4-125 (131)
181 PRK11388 DNA-binding transcrip 98.6 7.8E-08 1.7E-12 100.8 7.0 153 74-252 348-533 (638)
182 PF00910 RNA_helicase: RNA hel 98.6 9.5E-08 2.1E-12 78.5 6.1 106 77-203 1-107 (107)
183 PRK04132 replication factor C 98.6 8E-07 1.7E-11 97.0 14.0 152 71-256 560-723 (846)
184 PRK05707 DNA polymerase III su 98.5 2.8E-06 6.1E-11 83.5 15.7 137 71-236 19-177 (328)
185 PF01695 IstB_IS21: IstB-like 98.5 7.7E-08 1.7E-12 86.4 3.9 71 72-149 45-119 (178)
186 PRK07399 DNA polymerase III su 98.5 4.4E-06 9.5E-11 81.6 15.9 177 51-258 2-215 (314)
187 PRK06964 DNA polymerase III su 98.5 2.3E-06 5.1E-11 84.7 13.9 138 68-235 16-202 (342)
188 PF06068 TIP49: TIP49 C-termin 98.5 1.2E-07 2.7E-12 95.1 4.7 56 74-130 50-107 (398)
189 PF00158 Sigma54_activat: Sigm 98.5 5.9E-07 1.3E-11 80.2 8.2 122 72-219 20-156 (168)
190 COG0542 clpA ATP-binding subun 98.5 5.2E-07 1.1E-11 97.4 9.2 118 69-205 515-645 (786)
191 PRK11608 pspF phage shock prot 98.5 7.3E-07 1.6E-11 86.9 9.3 134 72-231 27-184 (326)
192 PF03969 AFG1_ATPase: AFG1-lik 98.5 2.4E-07 5.3E-12 92.2 6.0 103 70-204 58-168 (362)
193 TIGR02974 phageshock_pspF psp 98.4 4.7E-07 1E-11 88.6 7.9 135 72-231 20-177 (329)
194 TIGR01817 nifA Nif-specific re 98.4 3.5E-07 7.6E-12 94.1 7.4 156 72-252 217-407 (534)
195 PF05729 NACHT: NACHT domain 98.4 2.8E-06 6.1E-11 71.3 11.2 141 75-238 1-164 (166)
196 COG1224 TIP49 DNA helicase TIP 98.4 2.7E-07 6E-12 92.4 5.8 58 72-130 63-122 (450)
197 PRK08058 DNA polymerase III su 98.4 5E-06 1.1E-10 81.2 14.0 136 70-234 24-179 (329)
198 COG0593 DnaA ATPase involved i 98.4 2E-06 4.3E-11 87.2 11.1 174 54-265 95-287 (408)
199 PRK15429 formate hydrogenlyase 98.4 2.6E-06 5.7E-11 90.4 12.3 133 72-231 397-554 (686)
200 TIGR00368 Mg chelatase-related 98.3 1.3E-06 2.9E-11 90.3 8.7 46 51-98 190-235 (499)
201 COG2812 DnaX DNA polymerase II 98.3 6.1E-06 1.3E-10 85.9 12.4 171 31-242 7-196 (515)
202 PRK05022 anaerobic nitric oxid 98.3 1.8E-06 3.9E-11 88.8 8.2 134 72-231 208-365 (509)
203 PRK15115 response regulator Gl 98.3 1.1E-06 2.5E-11 87.2 6.4 133 74-231 157-312 (444)
204 PRK00131 aroK shikimate kinase 98.3 2.2E-06 4.8E-11 73.3 7.3 44 73-118 3-46 (175)
205 PF01637 Arch_ATPase: Archaeal 98.3 1.3E-06 2.7E-11 77.0 5.7 155 73-253 19-223 (234)
206 PF13671 AAA_33: AAA domain; P 98.2 2.4E-06 5.2E-11 71.2 6.1 39 76-116 1-39 (143)
207 COG1484 DnaC DNA replication p 98.2 5.1E-06 1.1E-10 78.8 9.0 69 73-149 104-178 (254)
208 PRK15424 propionate catabolism 98.2 2.5E-06 5.4E-11 89.1 7.3 134 72-231 240-406 (538)
209 smart00763 AAA_PrkA PrkA AAA d 98.2 4.6E-06 1E-10 83.4 8.9 56 74-129 78-144 (361)
210 PRK10820 DNA-binding transcrip 98.2 6.5E-06 1.4E-10 85.2 10.3 132 75-232 228-384 (520)
211 PF13207 AAA_17: AAA domain; P 98.2 1.4E-06 3E-11 71.1 4.2 32 76-107 1-32 (121)
212 PHA00729 NTP-binding motif con 98.2 4.7E-06 1E-10 78.6 8.0 44 58-102 2-45 (226)
213 PF13173 AAA_14: AAA domain 98.2 2.8E-06 6E-11 71.3 5.8 69 75-150 3-73 (128)
214 PF13191 AAA_16: AAA ATPase do 98.2 4.2E-06 9.1E-11 72.0 6.7 42 69-110 19-63 (185)
215 PRK11361 acetoacetate metaboli 98.2 2.7E-06 5.9E-11 84.5 6.3 131 74-231 166-321 (457)
216 PLN03210 Resistant to P. syrin 98.2 1.1E-05 2.4E-10 90.4 11.6 133 71-238 204-365 (1153)
217 PF12775 AAA_7: P-loop contain 98.2 8.1E-07 1.7E-11 85.0 2.2 155 57-238 22-194 (272)
218 TIGR02329 propionate_PrpR prop 98.2 6.1E-06 1.3E-10 85.9 8.8 134 72-231 233-391 (526)
219 PRK08699 DNA polymerase III su 98.1 2.2E-05 4.8E-10 77.1 11.3 133 72-234 19-182 (325)
220 PRK09376 rho transcription ter 98.1 7.8E-06 1.7E-10 83.0 8.2 74 77-151 172-269 (416)
221 PLN02200 adenylate kinase fami 98.1 3.1E-06 6.7E-11 79.2 4.8 45 68-114 37-81 (234)
222 PF13177 DNA_pol3_delta2: DNA 98.1 1.5E-05 3.2E-10 70.4 8.7 116 71-213 16-151 (162)
223 PRK06762 hypothetical protein; 98.1 5.9E-06 1.3E-10 71.5 5.9 42 74-115 2-43 (166)
224 cd01128 rho_factor Transcripti 98.1 1.4E-05 3E-10 75.9 8.5 78 71-150 13-115 (249)
225 PRK08769 DNA polymerase III su 98.1 6.9E-05 1.5E-09 73.7 13.6 149 70-251 22-195 (319)
226 TIGR02237 recomb_radB DNA repa 98.1 3.5E-05 7.5E-10 69.1 10.5 74 75-151 13-110 (209)
227 PRK13947 shikimate kinase; Pro 98.1 1.3E-05 2.9E-10 69.3 7.6 41 77-119 4-44 (171)
228 PRK14532 adenylate kinase; Pro 98.1 3.7E-06 7.9E-11 74.3 4.2 36 77-114 3-38 (188)
229 PRK10365 transcriptional regul 98.1 3.2E-05 6.9E-10 76.4 11.0 134 74-231 162-317 (441)
230 PHA02774 E1; Provisional 98.0 3.3E-05 7.1E-10 81.6 11.5 110 57-203 420-532 (613)
231 TIGR02915 PEP_resp_reg putativ 98.0 2.9E-05 6.4E-10 77.2 10.4 131 75-231 163-317 (445)
232 PF03215 Rad17: Rad17 cell cyc 98.0 7.4E-06 1.6E-10 85.3 6.2 46 60-105 30-76 (519)
233 cd01124 KaiC KaiC is a circadi 98.0 3.5E-05 7.6E-10 67.0 9.4 32 76-107 1-35 (187)
234 PRK06696 uridine kinase; Valid 98.0 1.6E-05 3.4E-10 73.0 7.5 42 71-112 19-63 (223)
235 KOG1514 Origin recognition com 98.0 1.8E-05 3.9E-10 84.6 8.7 138 75-240 423-592 (767)
236 PF14532 Sigma54_activ_2: Sigm 98.0 1.7E-05 3.6E-10 67.5 6.9 101 73-220 20-123 (138)
237 COG2607 Predicted ATPase (AAA+ 98.0 0.00043 9.3E-09 66.8 16.9 127 46-208 53-188 (287)
238 TIGR01818 ntrC nitrogen regula 98.0 4.3E-06 9.3E-11 83.4 3.6 135 73-230 156-311 (463)
239 PHA02530 pseT polynucleotide k 98.0 1.9E-05 4.2E-10 74.5 7.8 39 74-113 2-40 (300)
240 PRK10923 glnG nitrogen regulat 98.0 1.1E-05 2.3E-10 81.0 6.2 134 73-231 160-316 (469)
241 cd02021 GntK Gluconate kinase 98.0 2.3E-05 5E-10 66.6 7.4 35 76-112 1-35 (150)
242 TIGR01359 UMP_CMP_kin_fam UMP- 98.0 4.8E-06 1E-10 72.8 3.2 37 76-114 1-37 (183)
243 cd00227 CPT Chloramphenicol (C 98.0 1.8E-05 3.9E-10 69.7 6.5 36 75-110 3-38 (175)
244 PRK08118 topology modulation p 97.9 2E-05 4.2E-10 70.0 6.7 45 76-120 3-47 (167)
245 cd00464 SK Shikimate kinase (S 97.9 1.5E-05 3.2E-10 67.3 5.2 41 77-119 2-42 (154)
246 TIGR01360 aden_kin_iso1 adenyl 97.9 1E-05 2.2E-10 70.5 4.1 36 76-113 5-40 (188)
247 TIGR00764 lon_rel lon-related 97.9 1.6E-05 3.4E-10 84.2 6.1 88 44-133 8-106 (608)
248 cd03283 ABC_MutS-like MutS-lik 97.9 9.7E-05 2.1E-09 67.4 10.3 22 75-96 26-47 (199)
249 PRK14531 adenylate kinase; Pro 97.9 1E-05 2.3E-10 71.9 3.8 37 75-113 3-39 (183)
250 PLN03046 D-glycerate 3-kinase; 97.9 2.2E-05 4.7E-10 80.5 6.6 66 40-111 179-252 (460)
251 COG0563 Adk Adenylate kinase a 97.9 1.2E-05 2.6E-10 72.7 4.1 51 76-132 2-52 (178)
252 PLN02796 D-glycerate 3-kinase 97.9 2.6E-05 5.6E-10 77.8 6.7 65 41-111 68-140 (347)
253 PRK06547 hypothetical protein; 97.9 2.8E-05 6.2E-10 69.7 6.3 46 71-118 12-57 (172)
254 KOG1942 DNA helicase, TBP-inte 97.9 1.4E-05 3E-10 79.1 4.4 55 75-130 65-121 (456)
255 COG1239 ChlI Mg-chelatase subu 97.9 0.00029 6.2E-09 71.9 13.9 167 52-238 16-233 (423)
256 PRK08233 hypothetical protein; 97.8 8.5E-05 1.8E-09 64.4 8.5 33 74-106 3-36 (182)
257 PRK07261 topology modulation p 97.8 4.9E-05 1.1E-09 67.5 7.0 43 76-118 2-44 (171)
258 PF00406 ADK: Adenylate kinase 97.8 8.9E-06 1.9E-10 69.7 2.0 35 79-115 1-35 (151)
259 PRK03839 putative kinase; Prov 97.8 2E-05 4.3E-10 69.3 4.2 31 76-106 2-32 (180)
260 PF05272 VirE: Virulence-assoc 97.8 0.0001 2.2E-09 67.8 8.8 45 51-97 31-75 (198)
261 PRK08154 anaerobic benzoate ca 97.8 5E-05 1.1E-09 73.6 7.1 62 55-118 114-175 (309)
262 PRK09862 putative ATP-dependen 97.8 2.7E-05 5.8E-10 81.0 5.4 46 51-98 189-234 (506)
263 PRK04040 adenylate kinase; Pro 97.8 6.5E-05 1.4E-09 68.1 7.1 37 73-111 1-39 (188)
264 TIGR03574 selen_PSTK L-seryl-t 97.8 5.1E-05 1.1E-09 70.5 6.3 68 77-146 2-75 (249)
265 TIGR01313 therm_gnt_kin carboh 97.8 8.4E-05 1.8E-09 64.1 7.2 33 77-111 1-33 (163)
266 PRK14527 adenylate kinase; Pro 97.8 1.8E-05 4E-10 70.6 3.2 41 72-114 4-44 (191)
267 PLN02674 adenylate kinase 97.8 4.2E-05 9.2E-10 72.7 5.7 41 72-114 29-69 (244)
268 PRK06871 DNA polymerase III su 97.7 0.0016 3.4E-08 64.5 16.8 136 71-235 21-177 (325)
269 KOG2227 Pre-initiation complex 97.7 0.00024 5.2E-09 73.5 11.5 182 58-266 159-370 (529)
270 PRK07993 DNA polymerase III su 97.7 0.00059 1.3E-08 67.4 13.7 148 70-250 20-190 (334)
271 PRK09361 radB DNA repair and r 97.7 9.9E-05 2.1E-09 67.1 7.7 39 70-108 19-60 (225)
272 cd02020 CMPK Cytidine monophos 97.7 2.6E-05 5.7E-10 64.9 3.6 31 76-106 1-31 (147)
273 KOG1970 Checkpoint RAD17-RFC c 97.7 0.00017 3.7E-09 75.8 10.2 57 50-106 78-142 (634)
274 PRK11823 DNA repair protein Ra 97.7 0.00014 3E-09 74.4 9.2 77 71-152 77-170 (446)
275 PRK13946 shikimate kinase; Pro 97.7 7.8E-05 1.7E-09 66.5 6.6 45 73-119 9-53 (184)
276 PTZ00088 adenylate kinase 1; P 97.7 4E-05 8.6E-10 71.9 4.8 42 71-114 3-44 (229)
277 cd03243 ABC_MutS_homologs The 97.7 0.00026 5.6E-09 63.9 9.7 77 72-152 27-122 (202)
278 cd01131 PilT Pilus retraction 97.7 9.3E-05 2E-09 67.1 6.9 67 76-147 3-83 (198)
279 PRK13695 putative NTPase; Prov 97.7 0.00022 4.8E-09 62.6 9.1 26 76-101 2-30 (174)
280 cd01428 ADK Adenylate kinase ( 97.7 3.5E-05 7.6E-10 67.5 4.0 35 77-113 2-36 (194)
281 PF06309 Torsin: Torsin; Inte 97.7 8.8E-05 1.9E-09 64.6 6.3 36 61-97 41-76 (127)
282 PRK14526 adenylate kinase; Pro 97.7 4.2E-05 9.1E-10 70.8 4.5 35 77-113 3-37 (211)
283 PRK13949 shikimate kinase; Pro 97.7 8.5E-05 1.8E-09 66.0 6.3 31 76-106 3-33 (169)
284 PRK14530 adenylate kinase; Pro 97.7 5.3E-05 1.1E-09 69.0 5.1 38 76-115 5-42 (215)
285 PF00931 NB-ARC: NB-ARC domain 97.7 0.00027 5.8E-09 65.6 9.8 153 72-261 17-199 (287)
286 PRK13948 shikimate kinase; Pro 97.7 0.00013 2.7E-09 66.3 7.4 44 72-117 8-51 (182)
287 TIGR01618 phage_P_loop phage n 97.7 9E-05 1.9E-09 69.5 6.5 74 72-150 10-93 (220)
288 cd02027 APSK Adenosine 5'-phos 97.7 0.00013 2.8E-09 63.3 7.1 35 77-111 2-39 (149)
289 PF13521 AAA_28: AAA domain; P 97.7 4.4E-05 9.5E-10 66.1 4.1 35 77-112 2-36 (163)
290 TIGR01351 adk adenylate kinase 97.7 3.1E-05 6.7E-10 70.2 3.3 35 77-113 2-36 (210)
291 cd03238 ABC_UvrA The excision 97.7 0.00032 6.9E-09 63.2 9.8 77 71-152 18-121 (176)
292 PF05621 TniB: Bacterial TniB 97.7 0.001 2.2E-08 65.4 13.9 198 68-296 55-286 (302)
293 PTZ00111 DNA replication licen 97.7 7.4E-05 1.6E-09 82.3 6.6 130 76-228 494-648 (915)
294 TIGR02858 spore_III_AA stage I 97.6 8.8E-05 1.9E-09 71.3 6.0 27 74-100 111-137 (270)
295 PF01443 Viral_helicase1: Vira 97.6 2.1E-05 4.5E-10 70.9 1.6 72 77-150 1-74 (234)
296 PRK00279 adk adenylate kinase; 97.6 4.9E-05 1.1E-09 69.2 4.0 36 76-113 2-37 (215)
297 KOG1968 Replication factor C, 97.6 0.00014 3.1E-09 79.9 8.1 148 76-252 359-519 (871)
298 TIGR02012 tigrfam_recA protein 97.6 0.00049 1.1E-08 68.0 11.1 74 75-153 56-148 (321)
299 PRK00625 shikimate kinase; Pro 97.6 7.1E-05 1.5E-09 67.3 4.8 39 76-116 2-40 (173)
300 PRK05537 bifunctional sulfate 97.6 0.0003 6.4E-09 74.1 10.0 94 42-138 362-466 (568)
301 TIGR00767 rho transcription te 97.6 0.00018 3.8E-09 73.4 8.1 74 77-151 171-268 (415)
302 cd00983 recA RecA is a bacter 97.6 0.00066 1.4E-08 67.2 11.8 77 72-153 51-148 (325)
303 PRK02496 adk adenylate kinase; 97.6 6.4E-05 1.4E-09 66.3 4.3 35 76-112 3-37 (184)
304 KOG3079 Uridylate kinase/adeny 97.6 0.00011 2.4E-09 67.9 5.9 44 69-114 3-46 (195)
305 PRK03731 aroL shikimate kinase 97.6 0.00018 3.8E-09 62.6 6.8 40 76-117 4-43 (171)
306 PRK01184 hypothetical protein; 97.6 6.6E-05 1.4E-09 66.1 4.2 36 75-113 2-37 (184)
307 PRK06090 DNA polymerase III su 97.6 0.0022 4.8E-08 63.3 15.1 137 70-235 21-178 (319)
308 PRK04220 2-phosphoglycerate ki 97.6 0.00034 7.4E-09 68.6 9.4 32 70-101 88-119 (301)
309 cd03280 ABC_MutS2 MutS2 homolo 97.6 0.0004 8.7E-09 62.6 9.2 78 71-152 24-122 (200)
310 COG1221 PspF Transcriptional r 97.6 8.8E-05 1.9E-09 75.3 5.1 204 45-281 70-314 (403)
311 cd03216 ABC_Carb_Monos_I This 97.5 0.00013 2.9E-09 63.8 5.5 77 71-151 23-113 (163)
312 PRK06067 flagellar accessory p 97.5 0.00025 5.3E-09 65.2 7.3 81 70-151 21-133 (234)
313 cd01393 recA_like RecA is a b 97.5 0.0006 1.3E-08 61.6 9.6 40 70-109 15-63 (226)
314 PRK06217 hypothetical protein; 97.5 9.2E-05 2E-09 65.8 4.1 34 76-111 3-36 (183)
315 PRK14528 adenylate kinase; Pro 97.5 0.0001 2.2E-09 66.2 4.3 36 76-113 3-38 (186)
316 cd00984 DnaB_C DnaB helicase C 97.5 0.00095 2.1E-08 60.9 10.6 38 70-107 9-50 (242)
317 cd01121 Sms Sms (bacterial rad 97.5 0.00041 9E-09 69.5 8.7 76 71-151 79-171 (372)
318 PHA02624 large T antigen; Prov 97.5 0.0023 4.9E-08 68.4 14.4 143 57-227 417-564 (647)
319 PF12774 AAA_6: Hydrolytic ATP 97.5 0.00098 2.1E-08 62.8 10.6 175 72-270 30-221 (231)
320 PRK14730 coaE dephospho-CoA ki 97.5 0.00014 3E-09 66.2 4.5 50 75-126 2-54 (195)
321 KOG1051 Chaperone HSP104 and r 97.4 0.00097 2.1E-08 73.6 11.6 111 72-205 589-712 (898)
322 cd03227 ABC_Class2 ABC-type Cl 97.4 0.00059 1.3E-08 59.7 8.1 108 73-208 20-145 (162)
323 TIGR00455 apsK adenylylsulfate 97.4 0.00053 1.1E-08 60.6 7.8 41 71-111 15-58 (184)
324 PRK05480 uridine/cytidine kina 97.4 0.00022 4.8E-09 64.3 5.5 40 72-111 4-44 (209)
325 PRK04182 cytidylate kinase; Pr 97.4 0.00014 3.1E-09 62.7 4.1 29 76-104 2-30 (180)
326 TIGR01420 pilT_fam pilus retra 97.4 0.00036 7.7E-09 68.7 7.3 69 74-147 122-204 (343)
327 PLN02459 probable adenylate ki 97.4 0.00015 3.2E-09 69.9 4.5 40 72-113 27-66 (261)
328 PRK12608 transcription termina 97.4 0.00043 9.2E-09 70.0 7.8 74 76-150 135-232 (380)
329 COG1485 Predicted ATPase [Gene 97.4 0.00095 2E-08 67.0 10.0 101 72-204 63-171 (367)
330 COG1102 Cmk Cytidylate kinase 97.4 7.8E-05 1.7E-09 67.9 2.1 53 76-130 2-54 (179)
331 TIGR00554 panK_bact pantothena 97.4 0.00027 5.8E-09 68.8 5.9 30 70-99 58-87 (290)
332 PRK03846 adenylylsulfate kinas 97.4 0.00075 1.6E-08 60.8 8.4 62 72-133 22-93 (198)
333 PF01078 Mg_chelatase: Magnesi 97.4 2.9E-05 6.4E-10 72.3 -0.7 44 52-98 2-46 (206)
334 COG1618 Predicted nucleotide k 97.4 0.001 2.2E-08 60.7 9.1 29 71-99 2-30 (179)
335 PRK04296 thymidine kinase; Pro 97.4 0.00063 1.4E-08 61.4 7.8 70 75-148 3-88 (190)
336 PRK13975 thymidylate kinase; P 97.4 0.00032 7E-09 62.0 5.8 29 75-103 3-31 (196)
337 PRK05439 pantothenate kinase; 97.4 0.00028 6.1E-09 69.4 5.8 77 31-111 37-128 (311)
338 PRK00889 adenylylsulfate kinas 97.4 0.00073 1.6E-08 59.1 7.9 38 73-110 3-43 (175)
339 PRK14529 adenylate kinase; Pro 97.3 0.00018 4E-09 67.5 4.1 38 77-116 3-40 (223)
340 cd03281 ABC_MSH5_euk MutS5 hom 97.3 0.00065 1.4E-08 62.6 7.6 74 74-151 29-121 (213)
341 TIGR01526 nadR_NMN_Atrans nico 97.3 0.00041 8.9E-09 68.1 6.6 73 74-149 162-242 (325)
342 cd03282 ABC_MSH4_euk MutS4 hom 97.3 0.0011 2.5E-08 60.8 9.1 30 72-101 27-61 (204)
343 TIGR03877 thermo_KaiC_1 KaiC d 97.3 0.0019 4.2E-08 59.9 10.7 38 70-107 17-57 (237)
344 PF08433 KTI12: Chromatin asso 97.3 0.00061 1.3E-08 65.5 7.5 72 76-149 3-81 (270)
345 TIGR02173 cyt_kin_arch cytidyl 97.3 0.00023 4.9E-09 61.1 4.1 29 76-104 2-30 (171)
346 PRK07667 uridine kinase; Provi 97.3 0.0006 1.3E-08 61.5 7.0 39 74-112 17-58 (193)
347 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.3 0.00023 5E-09 61.3 4.0 76 71-151 23-101 (144)
348 PRK05800 cobU adenosylcobinami 97.3 0.001 2.2E-08 59.6 8.2 36 76-111 3-38 (170)
349 PRK05541 adenylylsulfate kinas 97.3 0.00078 1.7E-08 59.0 7.3 38 72-109 5-45 (176)
350 PF06414 Zeta_toxin: Zeta toxi 97.3 0.0003 6.6E-09 63.4 4.8 43 71-113 12-55 (199)
351 PF13086 AAA_11: AAA domain; P 97.3 0.00026 5.7E-09 62.2 4.3 25 74-98 17-41 (236)
352 PRK12339 2-phosphoglycerate ki 97.3 0.00026 5.7E-09 64.9 4.3 37 73-111 2-38 (197)
353 PRK00300 gmk guanylate kinase; 97.3 0.0012 2.5E-08 59.0 8.4 28 72-99 3-30 (205)
354 cd00267 ABC_ATPase ABC (ATP-bi 97.3 0.00066 1.4E-08 58.4 6.4 75 73-151 24-111 (157)
355 PRK08356 hypothetical protein; 97.3 0.00036 7.8E-09 62.7 4.9 35 74-111 5-39 (195)
356 cd03222 ABC_RNaseL_inhibitor T 97.3 0.00039 8.5E-09 62.7 5.1 77 71-151 22-102 (177)
357 PRK00771 signal recognition pa 97.3 0.0016 3.5E-08 66.8 9.9 36 72-107 93-131 (437)
358 TIGR03881 KaiC_arch_4 KaiC dom 97.2 0.0022 4.8E-08 58.4 9.9 38 70-107 16-56 (229)
359 KOG3347 Predicted nucleotide k 97.2 0.00024 5.3E-09 64.2 3.5 46 76-129 9-54 (176)
360 cd02019 NK Nucleoside/nucleoti 97.2 0.0006 1.3E-08 52.0 5.1 37 77-113 2-39 (69)
361 cd02022 DPCK Dephospho-coenzym 97.2 0.00035 7.6E-09 62.1 4.4 38 76-116 1-38 (179)
362 COG2074 2-phosphoglycerate kin 97.2 0.0011 2.3E-08 64.4 7.9 52 52-103 65-118 (299)
363 PRK09270 nucleoside triphospha 97.2 0.00076 1.6E-08 62.2 6.7 30 71-100 30-59 (229)
364 PRK14733 coaE dephospho-CoA ki 97.2 0.00059 1.3E-08 63.2 5.9 43 72-116 4-46 (204)
365 cd01394 radB RadB. The archaea 97.2 0.0013 2.9E-08 59.4 8.0 39 70-108 15-56 (218)
366 KOG0991 Replication factor C, 97.2 0.00089 1.9E-08 64.8 7.1 72 72-151 47-126 (333)
367 cd01123 Rad51_DMC1_radA Rad51_ 97.2 0.0021 4.6E-08 58.4 9.3 81 70-151 15-128 (235)
368 cd00046 DEXDc DEAD-like helica 97.2 0.00045 9.7E-09 54.6 4.2 24 76-99 2-25 (144)
369 PRK12338 hypothetical protein; 97.2 0.0004 8.6E-09 68.7 4.7 38 72-111 2-39 (319)
370 PF12780 AAA_8: P-loop contain 97.2 0.0019 4.2E-08 62.1 9.3 87 52-148 12-99 (268)
371 PRK09435 membrane ATPase/prote 97.2 0.0021 4.5E-08 63.8 9.6 52 56-110 41-97 (332)
372 PRK15455 PrkA family serine pr 97.2 0.00071 1.5E-08 72.0 6.6 44 75-118 104-148 (644)
373 KOG2170 ATPase of the AAA+ sup 97.2 0.0011 2.4E-08 65.6 7.5 47 52-98 80-134 (344)
374 PRK14737 gmk guanylate kinase; 97.2 0.00076 1.6E-08 61.1 5.9 26 73-98 3-28 (186)
375 TIGR00235 udk uridine kinase. 97.2 0.00052 1.1E-08 62.1 4.9 29 72-100 4-32 (207)
376 PRK13808 adenylate kinase; Pro 97.2 0.00029 6.2E-09 70.0 3.4 35 77-113 3-37 (333)
377 cd01672 TMPK Thymidine monopho 97.2 0.00099 2.1E-08 57.8 6.4 46 76-126 2-50 (200)
378 PRK05057 aroK shikimate kinase 97.2 0.00046 1E-08 61.3 4.4 34 74-107 4-37 (172)
379 cd01122 GP4d_helicase GP4d_hel 97.1 0.0018 4E-08 60.2 8.4 37 71-107 27-67 (271)
380 smart00534 MUTSac ATPase domai 97.1 0.0015 3.3E-08 58.4 7.5 71 77-151 2-91 (185)
381 PF13245 AAA_19: Part of AAA d 97.1 0.00072 1.6E-08 53.3 4.8 35 74-108 10-51 (76)
382 cd03232 ABC_PDR_domain2 The pl 97.1 0.0023 5E-08 57.3 8.6 27 71-97 30-56 (192)
383 PRK09354 recA recombinase A; P 97.1 0.004 8.6E-08 62.4 11.1 77 72-153 56-153 (349)
384 PF01583 APS_kinase: Adenylyls 97.1 0.0021 4.5E-08 57.6 8.2 66 74-140 2-77 (156)
385 cd03223 ABCD_peroxisomal_ALDP 97.1 0.0034 7.4E-08 55.1 9.5 77 71-151 24-122 (166)
386 TIGR03878 thermo_KaiC_2 KaiC d 97.1 0.0033 7.1E-08 59.5 10.1 38 70-107 32-72 (259)
387 PF14516 AAA_35: AAA-like doma 97.1 0.021 4.6E-07 56.0 16.0 79 72-152 29-141 (331)
388 cd03246 ABCC_Protease_Secretio 97.1 0.0017 3.7E-08 57.0 7.6 27 72-98 26-52 (173)
389 cd02024 NRK1 Nicotinamide ribo 97.1 0.00038 8.3E-09 63.6 3.6 35 76-112 1-36 (187)
390 PRK14731 coaE dephospho-CoA ki 97.1 0.00076 1.6E-08 61.7 5.5 40 72-114 3-42 (208)
391 cd03228 ABCC_MRP_Like The MRP 97.1 0.0027 5.9E-08 55.7 8.7 29 71-99 25-53 (171)
392 PF00485 PRK: Phosphoribulokin 97.1 0.00041 9E-09 62.1 3.5 25 76-100 1-25 (194)
393 COG2204 AtoC Response regulato 97.1 0.0011 2.4E-08 68.5 7.0 120 73-219 163-298 (464)
394 PF13238 AAA_18: AAA domain; P 97.1 0.00041 8.8E-09 56.1 3.1 22 77-98 1-22 (129)
395 PF06745 KaiC: KaiC; InterPro 97.1 0.0017 3.6E-08 59.1 7.5 38 70-107 15-56 (226)
396 COG0606 Predicted ATPase with 97.1 0.00023 5E-09 73.6 2.0 46 49-96 175-220 (490)
397 PRK08533 flagellar accessory p 97.1 0.0025 5.3E-08 59.5 8.7 37 71-107 21-60 (230)
398 cd02023 UMPK Uridine monophosp 97.1 0.00079 1.7E-08 60.1 5.1 37 76-112 1-38 (198)
399 PRK00081 coaE dephospho-CoA ki 97.1 0.00087 1.9E-08 60.6 5.3 39 74-115 2-40 (194)
400 cd01130 VirB11-like_ATPase Typ 97.1 0.0024 5.2E-08 57.1 8.1 72 72-148 23-110 (186)
401 COG0703 AroK Shikimate kinase 97.1 0.00088 1.9E-08 61.1 5.3 30 77-106 5-34 (172)
402 cd03115 SRP The signal recogni 97.1 0.0019 4.1E-08 56.3 7.2 33 76-108 2-37 (173)
403 cd03214 ABC_Iron-Siderophores_ 97.0 0.0027 5.9E-08 56.1 8.1 28 71-98 22-49 (180)
404 cd03247 ABCC_cytochrome_bd The 97.0 0.0027 6E-08 55.9 8.1 29 71-99 25-53 (178)
405 cd03284 ABC_MutS1 MutS1 homolo 97.0 0.0041 8.8E-08 57.5 9.5 75 75-151 31-122 (216)
406 cd03213 ABCG_EPDR ABCG transpo 97.0 0.0026 5.6E-08 57.1 7.9 28 71-98 32-59 (194)
407 cd02028 UMPK_like Uridine mono 97.0 0.00072 1.6E-08 60.5 4.2 37 76-112 1-40 (179)
408 TIGR02525 plasmid_TraJ plasmid 97.0 0.0016 3.4E-08 65.5 6.9 69 76-149 151-236 (372)
409 TIGR00416 sms DNA repair prote 97.0 0.0073 1.6E-07 62.1 11.9 77 70-151 90-183 (454)
410 cd00544 CobU Adenosylcobinamid 97.0 0.0042 9.1E-08 55.7 8.9 36 76-111 1-36 (169)
411 PRK08099 bifunctional DNA-bind 97.0 0.0015 3.2E-08 66.2 6.6 40 73-112 218-257 (399)
412 TIGR03499 FlhF flagellar biosy 97.0 0.0051 1.1E-07 59.1 10.0 36 73-108 193-233 (282)
413 PRK14974 cell division protein 97.0 0.0072 1.6E-07 60.1 11.3 34 73-106 139-175 (336)
414 COG4240 Predicted kinase [Gene 97.0 0.00077 1.7E-08 64.9 4.2 44 71-114 47-94 (300)
415 COG1936 Predicted nucleotide k 97.0 0.00062 1.3E-08 62.4 3.3 30 76-106 2-31 (180)
416 COG3829 RocR Transcriptional r 97.0 0.00084 1.8E-08 70.5 4.7 122 72-219 266-403 (560)
417 PRK14722 flhF flagellar biosyn 96.9 0.0013 2.8E-08 66.3 5.8 25 74-98 137-161 (374)
418 TIGR00017 cmk cytidylate kinas 96.9 0.0009 1.9E-08 62.2 4.3 36 74-111 2-37 (217)
419 TIGR01663 PNK-3'Pase polynucle 96.9 0.0021 4.6E-08 67.4 7.6 59 72-142 367-425 (526)
420 PLN02199 shikimate kinase 96.9 0.0023 4.9E-08 63.1 7.3 47 60-106 88-134 (303)
421 cd00071 GMPK Guanosine monopho 96.9 0.0037 8E-08 53.7 7.7 25 77-101 2-26 (137)
422 cd03230 ABC_DR_subfamily_A Thi 96.9 0.0024 5.3E-08 56.1 6.7 26 73-98 25-50 (173)
423 PRK14021 bifunctional shikimat 96.9 0.0015 3.3E-08 68.2 6.3 35 72-107 5-39 (542)
424 cd03239 ABC_SMC_head The struc 96.9 0.0035 7.7E-08 56.2 7.8 29 76-104 24-52 (178)
425 cd03229 ABC_Class3 This class 96.9 0.0033 7.1E-08 55.5 7.4 27 72-98 24-50 (178)
426 PRK04301 radA DNA repair and r 96.9 0.0058 1.3E-07 59.2 9.8 29 70-98 98-126 (317)
427 TIGR02236 recomb_radA DNA repa 96.9 0.0057 1.2E-07 58.8 9.7 40 70-109 91-139 (310)
428 PRK12337 2-phosphoglycerate ki 96.9 0.0042 9.1E-08 64.5 9.2 30 72-101 253-282 (475)
429 PRK13477 bifunctional pantoate 96.9 0.00095 2.1E-08 69.8 4.6 39 73-113 283-321 (512)
430 PF01745 IPT: Isopentenyl tran 96.9 0.0015 3.3E-08 61.9 5.4 47 75-121 2-48 (233)
431 TIGR00152 dephospho-CoA kinase 96.9 0.0011 2.3E-08 59.1 4.1 49 76-126 1-52 (188)
432 TIGR00150 HI0065_YjeE ATPase, 96.9 0.0012 2.6E-08 57.7 4.2 30 72-101 20-49 (133)
433 PLN02348 phosphoribulokinase 96.9 0.0015 3.3E-08 66.3 5.6 30 71-100 46-75 (395)
434 TIGR00064 ftsY signal recognit 96.9 0.017 3.7E-07 55.5 12.5 36 72-107 70-108 (272)
435 PRK00023 cmk cytidylate kinase 96.9 0.001 2.3E-08 61.8 4.0 36 74-111 4-39 (225)
436 TIGR03880 KaiC_arch_3 KaiC dom 96.8 0.0086 1.9E-07 54.6 9.8 38 70-107 12-52 (224)
437 cd03215 ABC_Carb_Monos_II This 96.8 0.0038 8.3E-08 55.3 7.3 28 71-98 23-50 (182)
438 TIGR03263 guanyl_kin guanylate 96.8 0.00084 1.8E-08 58.5 3.0 28 75-102 2-29 (180)
439 PRK09825 idnK D-gluconate kina 96.8 0.0013 2.7E-08 59.0 4.1 34 75-110 4-37 (176)
440 PF13479 AAA_24: AAA domain 96.8 0.0036 7.7E-08 57.4 7.2 72 72-149 1-79 (213)
441 TIGR02782 TrbB_P P-type conjug 96.8 0.0026 5.7E-08 61.8 6.6 70 74-148 132-214 (299)
442 KOG1051 Chaperone HSP104 and r 96.8 0.0085 1.8E-07 66.4 11.1 183 72-281 206-424 (898)
443 PRK09519 recA DNA recombinatio 96.8 0.0047 1E-07 67.7 9.0 78 71-153 57-153 (790)
444 PRK00091 miaA tRNA delta(2)-is 96.8 0.0014 3.1E-08 64.2 4.6 36 73-108 3-38 (307)
445 cd01673 dNK Deoxyribonucleosid 96.8 0.0028 6.1E-08 56.1 6.1 28 77-104 2-29 (193)
446 PTZ00494 tuzin-like protein; P 96.8 0.0059 1.3E-07 63.8 9.0 75 68-144 389-477 (664)
447 PRK13764 ATPase; Provisional 96.8 0.0021 4.6E-08 68.4 6.0 27 73-99 256-282 (602)
448 cd01129 PulE-GspE PulE/GspE Th 96.8 0.0036 7.7E-08 59.7 6.9 70 76-149 82-160 (264)
449 TIGR01425 SRP54_euk signal rec 96.8 0.023 5E-07 58.4 13.2 36 72-107 98-136 (429)
450 cd02025 PanK Pantothenate kina 96.8 0.0012 2.6E-08 61.2 3.6 36 76-111 1-41 (220)
451 COG2274 SunT ABC-type bacterio 96.8 0.0014 2.9E-08 71.0 4.4 28 71-98 494-523 (709)
452 PRK10078 ribose 1,5-bisphospho 96.8 0.0014 3E-08 58.4 3.8 33 75-108 3-35 (186)
453 PF00448 SRP54: SRP54-type pro 96.8 0.0048 1E-07 56.5 7.4 25 74-98 1-25 (196)
454 PRK05917 DNA polymerase III su 96.7 0.011 2.4E-07 57.8 10.3 117 70-213 15-144 (290)
455 PRK11545 gntK gluconate kinase 96.7 0.0011 2.4E-08 58.4 3.1 25 81-107 2-26 (163)
456 PF00437 T2SE: Type II/IV secr 96.7 0.0023 5.1E-08 59.8 5.4 73 72-149 125-208 (270)
457 PF05970 PIF1: PIF1-like helic 96.7 0.0029 6.3E-08 62.7 6.3 29 72-100 20-48 (364)
458 TIGR02868 CydC thiol reductant 96.7 0.0066 1.4E-07 62.2 9.0 25 75-99 362-386 (529)
459 COG4608 AppF ABC-type oligopep 96.7 0.0049 1.1E-07 59.8 7.6 78 71-151 36-140 (268)
460 TIGR02688 conserved hypothetic 96.7 0.0022 4.8E-08 66.0 5.5 84 47-150 185-272 (449)
461 PRK13951 bifunctional shikimat 96.7 0.0022 4.8E-08 66.4 5.5 41 76-118 2-42 (488)
462 KOG2680 DNA helicase TIP49, TB 96.7 0.0011 2.5E-08 66.0 3.2 57 73-130 65-123 (454)
463 PTZ00035 Rad51 protein; Provis 96.7 0.012 2.6E-07 58.3 10.3 28 71-98 115-142 (337)
464 PF05707 Zot: Zonular occluden 96.7 0.0017 3.8E-08 58.5 4.1 121 76-222 2-142 (193)
465 TIGR02788 VirB11 P-type DNA tr 96.7 0.0031 6.7E-08 61.1 6.1 73 71-148 141-228 (308)
466 PRK04841 transcriptional regul 96.7 0.039 8.4E-07 59.4 14.8 34 73-107 31-64 (903)
467 PRK05506 bifunctional sulfate 96.7 0.0056 1.2E-07 64.9 8.3 75 72-152 458-542 (632)
468 TIGR03796 NHPM_micro_ABC1 NHPM 96.7 0.0053 1.2E-07 65.3 8.2 25 75-99 506-530 (710)
469 cd00561 CobA_CobO_BtuR ATP:cor 96.7 0.007 1.5E-07 54.3 7.7 75 76-151 4-108 (159)
470 PRK13406 bchD magnesium chelat 96.7 0.022 4.8E-07 60.5 12.7 174 58-252 8-206 (584)
471 PRK11174 cysteine/glutathione 96.6 0.0056 1.2E-07 63.5 7.9 24 75-98 377-400 (588)
472 PRK10416 signal recognition pa 96.6 0.019 4.1E-07 56.5 11.2 35 72-106 112-149 (318)
473 KOG2383 Predicted ATPase [Gene 96.6 0.0057 1.2E-07 62.7 7.5 27 71-97 111-137 (467)
474 COG1373 Predicted ATPase (AAA+ 96.6 0.0094 2E-07 60.2 9.1 83 60-151 25-107 (398)
475 TIGR02322 phosphon_PhnN phosph 96.6 0.0019 4.1E-08 56.5 3.6 25 76-100 3-27 (179)
476 TIGR02239 recomb_RAD51 DNA rep 96.6 0.011 2.4E-07 57.9 9.2 40 71-110 93-141 (316)
477 PRK13900 type IV secretion sys 96.6 0.01 2.2E-07 58.7 9.0 73 72-149 158-246 (332)
478 PRK15453 phosphoribulokinase; 96.6 0.0031 6.7E-08 61.8 5.2 40 72-111 3-45 (290)
479 PRK13973 thymidylate kinase; P 96.6 0.0056 1.2E-07 56.0 6.6 47 75-126 4-53 (213)
480 PLN02165 adenylate isopentenyl 96.6 0.0023 5.1E-08 63.7 4.4 39 74-112 43-81 (334)
481 PRK10867 signal recognition pa 96.6 0.042 9E-07 56.6 13.5 36 72-107 98-137 (433)
482 PRK13657 cyclic beta-1,2-gluca 96.6 0.0057 1.2E-07 63.6 7.5 25 75-99 362-386 (588)
483 PRK07429 phosphoribulokinase; 96.6 0.0026 5.7E-08 62.8 4.7 31 71-101 5-35 (327)
484 PTZ00301 uridine kinase; Provi 96.6 0.0029 6.3E-08 58.7 4.7 24 75-98 4-27 (210)
485 cd01125 repA Hexameric Replica 96.6 0.022 4.7E-07 52.7 10.4 21 77-97 4-24 (239)
486 PF07931 CPT: Chloramphenicol 96.6 0.0051 1.1E-07 55.8 6.1 38 75-112 2-39 (174)
487 COG3854 SpoIIIAA ncharacterize 96.6 0.0065 1.4E-07 58.8 7.1 72 72-147 135-227 (308)
488 PTZ00202 tuzin; Provisional 96.5 0.015 3.3E-07 60.7 10.0 39 69-107 281-319 (550)
489 TIGR00750 lao LAO/AO transport 96.5 0.0089 1.9E-07 57.7 7.9 29 70-98 30-58 (300)
490 PRK13833 conjugal transfer pro 96.5 0.005 1.1E-07 60.9 6.3 69 74-147 144-224 (323)
491 PRK10790 putative multidrug tr 96.5 0.0086 1.9E-07 62.3 8.3 26 75-100 368-393 (592)
492 PRK09302 circadian clock prote 96.5 0.015 3.2E-07 59.9 9.8 26 70-95 27-52 (509)
493 cd03287 ABC_MSH3_euk MutS3 hom 96.5 0.019 4.1E-07 53.7 9.7 25 72-96 29-53 (222)
494 PRK14734 coaE dephospho-CoA ki 96.5 0.0037 8.1E-08 57.1 4.9 36 75-113 2-37 (200)
495 PRK14738 gmk guanylate kinase; 96.5 0.0026 5.6E-08 58.0 3.8 27 71-97 10-36 (206)
496 PRK04328 hypothetical protein; 96.5 0.014 3E-07 55.0 8.8 37 71-107 20-59 (249)
497 COG0572 Udk Uridine kinase [Nu 96.5 0.003 6.5E-08 59.6 4.3 32 73-104 7-38 (218)
498 TIGR02238 recomb_DMC1 meiotic 96.5 0.024 5.3E-07 55.6 10.7 22 75-96 97-118 (313)
499 TIGR00708 cobA cob(I)alamin ad 96.5 0.01 2.2E-07 54.1 7.4 75 76-151 7-110 (173)
500 TIGR03575 selen_PSTK_euk L-ser 96.4 0.0049 1.1E-07 61.5 5.8 53 77-129 2-63 (340)
No 1
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=100.00 E-value=5.5e-111 Score=827.56 Aligned_cols=332 Identities=61% Similarity=1.077 Sum_probs=320.9
Q ss_pred cccCCcccccccCC-CCcchhHHHHHHH-HhhhhhhhhcccccccHHHHHHHHHHHHHHHHHhhcCCCCCeEEEeecCCC
Q 019334 7 ARAGVIDPLFAGNF-LGKDSDIVFDYRQ-KVTRSFEYLQGDYYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKG 84 (342)
Q Consensus 7 ~~~~~~~~~f~~~~-~g~~~~~~~~~~~-~~~r~f~~~~~~~y~~~~f~d~l~~hi~K~~l~~~~~~k~PlglgL~GPPG 84 (342)
..+||||+||||++ +|+|+||++.|++ +++|+|.|++++||++|+|+|+++.||+||++. ++|+++|+|+|||||||
T Consensus 80 ~g~g~vd~lf~~~~~~g~~~~i~~~~~~~~~~~~f~~~~g~~~~~p~f~dk~~~hi~kn~l~-~~~ik~PlgllL~GPPG 158 (413)
T PLN00020 80 RGKGMVDSLFQGPFGLGTDSDIASSYDYLQRTRSFDNLVGGYYIAPAFMDKVAVHIAKNFLA-LPNIKVPLILGIWGGKG 158 (413)
T ss_pred hcCCchhhhhcCCccCCcchhhhhhhHHHhhhcchhhhcCccccCHHHHHHHHHHHHhhhhh-ccCCCCCeEEEeeCCCC
Confidence 45799999999999 8999999998888 899999999999999999999999999999999 79999999999999999
Q ss_pred CCHHHHHHHHHHHhCCceEEeecccccccccCCcHHHHHHHHHHHHHhhhhcCCceEEEeecccccCCCCCCCcccchhH
Q 019334 85 QGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQ 164 (342)
Q Consensus 85 ~GKTllaravA~~~g~~~i~vs~~eL~s~~~GEsEr~iR~~F~~A~e~~~~~~~PcILfIDEIDAg~~r~~~t~~~v~~q 164 (342)
||||++|+|||+++|++||.|+++||+++|+|||||+||++|++|++.++++++|||||||||||++++++++++++++|
T Consensus 159 cGKTllAraiA~elg~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~~~tv~~q 238 (413)
T PLN00020 159 QGKSFQCELVFKKMGIEPIVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGTTQYTVNNQ 238 (413)
T ss_pred CCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCCCCcchHHH
Confidence 99999999999999999999999999999999999999999999999887789999999999999999999888999999
Q ss_pred HHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCCccCCCCCCCCcceecCCCHHHHHHHHHHHhhcCCCCH
Q 019334 165 IVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITK 244 (342)
Q Consensus 165 ~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~~~LdpaLlRpGRfD~~i~vP~~~~R~~Il~~~~~~~~~s~ 244 (342)
+|++|||++|||||+||++|.|+..+..++||||+|||||++|||||+||||||++||+||+++|.+||+.|+++++++.
T Consensus 239 iV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~i~lPd~e~R~eIL~~~~r~~~l~~ 318 (413)
T PLN00020 239 MVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVVHGIFRDDGVSR 318 (413)
T ss_pred HHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcCCCCCCceeCCCCHHHHHHHHHHHhccCCCCH
Confidence 99999999999999999999995444478999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCccchHHHHHHHHHHHHHHHHHHHcCCcchhhhhhhcccCCCCCCcccCCcCCHHHHHHHHHHHHHHH
Q 019334 245 DEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQ 324 (342)
Q Consensus 245 ~di~~lvd~f~~~~~df~gAlrs~~~~e~ir~w~~~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~l~~eq 324 (342)
+|+++||++||||++|||||+||++||++|++|+.++ |+|++|++|+|++++ +|+|++|++||++||++|++|++||
T Consensus 319 ~dv~~Lv~~f~gq~~Df~GAlrar~yd~~v~~~i~~~-g~~~~~~~l~~~~~~--~p~f~~~~~t~~~l~~~g~~l~~eq 395 (413)
T PLN00020 319 EDVVKLVDTFPGQPLDFFGALRARVYDDEVRKWIAEV-GVENLGKKLVNSKKG--PPTFEPPKMTLEKLLEYGNMLVREQ 395 (413)
T ss_pred HHHHHHHHcCCCCCchhhhHHHHHHHHHHHHHHHHHh-hHHHHHHHHhcCCCC--CCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999 999999999999887 6999999999999999999999999
Q ss_pred HHHHhhhhHHHHHhcCCC
Q 019334 325 QLIMETKLSKEYMKNIDD 342 (342)
Q Consensus 325 ~~v~~~~l~~~y~~~~~~ 342 (342)
|||++++||+|||+++++
T Consensus 396 ~~v~~~~l~~~y~~~~~~ 413 (413)
T PLN00020 396 ENVKRVQLSDEYLKNAAL 413 (413)
T ss_pred HHHHHHHHHHHHHHhccC
Confidence 999999999999999875
No 2
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-73 Score=548.27 Aligned_cols=293 Identities=26% Similarity=0.367 Sum_probs=275.4
Q ss_pred ccccccccCC-cccccccCCCCcchhHHHHHHHHhhh--hhhhhcccccccHHHHHHHHHHHHHHHHHhhcCCCCCeEEE
Q 019334 2 NIAVGARAGV-IDPLFAGNFLGKDSDIVFDYRQKVTR--SFEYLQGDYYIAPVFMASLLCHIVKNYIAHLLNVKVPLILG 78 (342)
Q Consensus 2 ~~~~~~~~~~-~~~~f~~~~~g~~~~~~~~~~~~~~r--~f~~~~~~~y~~~~f~d~l~~hi~K~~l~~~~~~k~Plglg 78 (342)
|++.|.|.++ |++||-|.+|++++|++++|++...| +|.++.+.+|+.|.|+|++.+||.++++....|+++|+|+|
T Consensus 91 ~i~~G~rv~ldittltIm~~lprevd~vy~m~~e~~~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~l 170 (388)
T KOG0651|consen 91 KIARGTRVVLDITTLTIMRGLPREVDLVYNMSHEDPRNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLL 170 (388)
T ss_pred hhccCceeeeeeeeeehhcccchHHHHHHHhhhcCccccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeE
Confidence 6889999999 99999999999999999999999999 89999999999999999999999999999667999999999
Q ss_pred eecCCCCCHHHHHHHHHHHhCCceEEeecccccccccCCcHHHHHHHHHHHHHhhhhcCCceEEEeecccccCCCCCCCc
Q 019334 79 IWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQ 158 (342)
Q Consensus 79 L~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~~~GEsEr~iR~~F~~A~e~~~~~~~PcILfIDEIDAg~~r~~~t~ 158 (342)
||||||+||||||+|||+.+|++|+.|++++|+++|+|||.|+||++|+.|++++ |||||||||||+.+|+ .++
T Consensus 171 l~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~kyiGEsaRlIRemf~yA~~~~-----pciifmdeiDAigGRr-~se 244 (388)
T KOG0651|consen 171 LYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKYIGESARLIRDMFRYAREVI-----PCIIFMDEIDAIGGRR-FSE 244 (388)
T ss_pred EeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhhcccHHHHHHHHHHHHhhhC-----ceEEeehhhhhhccEE-ecc
Confidence 9999999999999999999999999999999999999999999999999999875 8999999999999988 678
Q ss_pred ccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCCccCCCCCCCCcceecC--CCHHHHHHHHHHH
Q 019334 159 MTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQ--PNLEDILNIVHRM 236 (342)
Q Consensus 159 ~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~~~LdpaLlRpGRfD~~i~v--P~~~~R~~Il~~~ 236 (342)
+|+++|+|++|||+|+| | |++.+...+||+|+||||||+|||||+|||||||+||+ |+...|.+
T Consensus 245 ~Ts~dreiqrTLMeLln-----q----mdgfd~l~rVk~ImatNrpdtLdpaLlRpGRldrk~~iPlpne~~r~~----- 310 (388)
T KOG0651|consen 245 GTSSDREIQRTLMELLN-----Q----MDGFDTLHRVKTIMATNRPDTLDPALLRPGRLDRKVEIPLPNEQARLG----- 310 (388)
T ss_pred ccchhHHHHHHHHHHHH-----h----hccchhcccccEEEecCCccccchhhcCCccccceeccCCcchhhcee-----
Confidence 89999999999999999 3 55567688999999999999999999999999999997 78888876
Q ss_pred hhcCCCCHHHHHHHhhcCCCCccchHHHHHHHHHHHHHHHHHHHcCCcchhhhhhhcccCCCCCCcccCCcCCHHHHHHH
Q 019334 237 YEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVFTPPEKTVEALLES 316 (342)
Q Consensus 237 ~~~~~~s~~di~~lvd~f~~~~~df~gAlrs~~~~e~ir~w~~~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 316 (342)
++.|++|++||+||++ +++|..|....||++ +..+..+. |.|..|+.+-+.|.|+
T Consensus 311 --------------I~Kih~~~i~~~Geid----~eaivK~~d~f~gad----~rn~~tEa---g~Fa~~~~~~~vl~Ed 365 (388)
T KOG0651|consen 311 --------------ILKIHVQPIDFHGEID----DEAILKLVDGFNGAD----LRNVCTEA---GMFAIPEERDEVLHED 365 (388)
T ss_pred --------------eEeecccccccccccc----HHHHHHHHhccChHH----Hhhhcccc---cccccchhhHHHhHHH
Confidence 4578899999999999 899999999998887 66666665 8999999999999999
Q ss_pred HHHHHHHHHHHHhhhhHHHHHhc
Q 019334 317 GYSLLREQQLIMETKLSKEYMKN 339 (342)
Q Consensus 317 g~~l~~eq~~v~~~~l~~~y~~~ 339 (342)
|..+++||.++++++++.+|++.
T Consensus 366 ~~k~vrk~~~~kkle~~~~Y~~~ 388 (388)
T KOG0651|consen 366 FMKLVRKQADAKKLELSLDYKKA 388 (388)
T ss_pred HHHHHHHHHHHHHhhhhhhhccC
Confidence 99999999999999999999963
No 3
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.6e-53 Score=414.25 Aligned_cols=197 Identities=21% Similarity=0.314 Sum_probs=171.5
Q ss_pred hcCCCCCeEEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccccccCCcHHHHHHHHHHHHHhhhhcCCceEEEeecc
Q 019334 68 LLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDI 147 (342)
Q Consensus 68 ~~~~k~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~~~GEsEr~iR~~F~~A~e~~~~~~~PcILfIDEI 147 (342)
..|++||+||+||||||||||++|||||++.+++||+|.++||+.||+||+.|++|++|+.|++. +|||||||||
T Consensus 179 ~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGEGaRlVRelF~lArek-----aPsIIFiDEI 253 (406)
T COG1222 179 ELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGEGARLVRELFELAREK-----APSIIFIDEI 253 (406)
T ss_pred HcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhccchHHHHHHHHHHhhc-----CCeEEEEech
Confidence 36999999999999999999999999999999999999999999999999999999999999864 6999999999
Q ss_pred cccCC-CCC-CCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCCccCCCCCCCCcceecC--
Q 019334 148 DAGLG-RFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQ-- 223 (342)
Q Consensus 148 DAg~~-r~~-~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~~~LdpaLlRpGRfD~~i~v-- 223 (342)
||+++ |++ +|++ ++.|+.|+|+|+. ||+| .+...+|.||+||||||+|||||+|||||||+|.+
T Consensus 254 DAIg~kR~d~~t~g---DrEVQRTmleLL~-----qlDG----FD~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfpl 321 (406)
T COG1222 254 DAIGAKRFDSGTSG---DREVQRTMLELLN-----QLDG----FDPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPL 321 (406)
T ss_pred hhhhcccccCCCCc---hHHHHHHHHHHHH-----hccC----CCCCCCeEEEEecCCccccChhhcCCCcccceeecCC
Confidence 99776 555 5554 4667777777766 6666 34477999999999999999999999999998875
Q ss_pred CCHHHHHHHHHHHhhcCC----CCHHHHHHHhhcCCCCccch------HHHHHHHHHHHHHHHHHHHc
Q 019334 224 PNLEDILNIVHRMYEKDG----ITKDEVGSIVKTFPNQALDF------YGALRSRTYDRSISKWIDDI 281 (342)
Q Consensus 224 P~~~~R~~Il~~~~~~~~----~s~~di~~lvd~f~~~~~df------~gAlrs~~~~e~ir~w~~~~ 281 (342)
||.+.|.+||++|++++. ++.+.++++.++|+|+++-- +.|+|.+.+...-.+|.+++
T Consensus 322 Pd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~sGAdlkaictEAGm~AiR~~R~~Vt~~DF~~Av 389 (406)
T COG1222 322 PDEEGRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLKAICTEAGMFAIRERRDEVTMEDFLKAV 389 (406)
T ss_pred CCHHHHHHHHHHHhhhccCccCcCHHHHHHhcCCCchHHHHHHHHHHhHHHHHhccCeecHHHHHHHH
Confidence 899999999999999875 56678888889999988644 45899888877788888887
No 4
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4e-50 Score=413.98 Aligned_cols=210 Identities=20% Similarity=0.283 Sum_probs=182.5
Q ss_pred HHHHHHHHHHHHHHHHHh-------------hcCCCCCeEEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccccccC
Q 019334 50 PVFMASLLCHIVKNYIAH-------------LLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAG 116 (342)
Q Consensus 50 ~~f~d~l~~hi~K~~l~~-------------~~~~k~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~~~G 116 (342)
-.|-|.+++.-+|.-|++ .+|+++|+|||+|||||||||++|||+|++++++|+.|+++||+|||+|
T Consensus 431 v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~vG 510 (693)
T KOG0730|consen 431 VSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYVG 510 (693)
T ss_pred CChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhcC
Confidence 357778889999999986 3689999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHhhhhcCCceEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCcc
Q 019334 117 EPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIP 196 (342)
Q Consensus 117 EsEr~iR~~F~~A~e~~~~~~~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~ 196 (342)
|||++||++|++|+++ +||||||||||++++.|++..+++. .+|.++||+.|||. +. .++|+
T Consensus 511 eSEr~ir~iF~kAR~~-----aP~IiFfDEiDsi~~~R~g~~~~v~-~RVlsqLLtEmDG~-----------e~-~k~V~ 572 (693)
T KOG0730|consen 511 ESERAIREVFRKARQV-----APCIIFFDEIDALAGSRGGSSSGVT-DRVLSQLLTEMDGL-----------EA-LKNVL 572 (693)
T ss_pred chHHHHHHHHHHHhhc-----CCeEEehhhHHhHhhccCCCccchH-HHHHHHHHHHcccc-----------cc-cCcEE
Confidence 9999999999999865 4999999999999998874444554 56888999999961 11 57999
Q ss_pred EEEeeCCCCCCccCCCCCCCCcceecC--CCHHHHHHHHHHHhhcCCCCH-HHHHHHhhcCCCCccchHHHHHHHHHHHH
Q 019334 197 IIFTGNDFSTIYAPLIRDGRMEKFYWQ--PNLEDILNIVHRMYEKDGITK-DEVGSIVKTFPNQALDFYGALRSRTYDRS 273 (342)
Q Consensus 197 VIatTNr~~~LdpaLlRpGRfD~~i~v--P~~~~R~~Il~~~~~~~~~s~-~di~~lvd~f~~~~~df~gAlrs~~~~e~ 273 (342)
||||||||+.|||||+||||||+.+|+ ||.+.|++||+.++++.+++. .|+++|+. ++..|+||....+|.++
T Consensus 573 ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~----~T~g~SGAel~~lCq~A 648 (693)
T KOG0730|consen 573 VIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQ----ATEGYSGAEIVAVCQEA 648 (693)
T ss_pred EEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHH----HhccCChHHHHHHHHHH
Confidence 999999999999999999999999987 899999999999999998765 36666653 22345678778899999
Q ss_pred HHHHHHHc
Q 019334 274 ISKWIDDI 281 (342)
Q Consensus 274 ir~w~~~~ 281 (342)
..-|+++.
T Consensus 649 ~~~a~~e~ 656 (693)
T KOG0730|consen 649 ALLALRES 656 (693)
T ss_pred HHHHHHHh
Confidence 99999987
No 5
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-49 Score=405.75 Aligned_cols=254 Identities=19% Similarity=0.236 Sum_probs=192.0
Q ss_pred HHHHHHHHHHHHHHHHh-------------hcCCCCCeEEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccccccCC
Q 019334 51 VFMASLLCHIVKNYIAH-------------LLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGE 117 (342)
Q Consensus 51 ~f~d~l~~hi~K~~l~~-------------~~~~k~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~~~GE 117 (342)
.+.|++++.-+++.|.. ..|+..|-|+|||||||||||++|||||+|.|+|||+|.++||+++|+||
T Consensus 509 tW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNkYVGE 588 (802)
T KOG0733|consen 509 TWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNKYVGE 588 (802)
T ss_pred ChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHHHhhh
Confidence 46677888888888865 36999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHhhhhcCCceEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccE
Q 019334 118 PGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPI 197 (342)
Q Consensus 118 sEr~iR~~F~~A~e~~~~~~~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~V 197 (342)
|||.||++|.+|+. .+|||||||||||++++|+.....+. .+|+.|||+.||| + ++ ..+|+|
T Consensus 589 SErAVR~vFqRAR~-----saPCVIFFDEiDaL~p~R~~~~s~~s-~RvvNqLLtElDG-----l------~~-R~gV~v 650 (802)
T KOG0733|consen 589 SERAVRQVFQRARA-----SAPCVIFFDEIDALVPRRSDEGSSVS-SRVVNQLLTELDG-----L------EE-RRGVYV 650 (802)
T ss_pred HHHHHHHHHHHhhc-----CCCeEEEecchhhcCcccCCCCchhH-HHHHHHHHHHhcc-----c------cc-ccceEE
Confidence 99999999999984 56999999999999999984444444 4577899999996 1 22 578999
Q ss_pred EEeeCCCCCCccCCCCCCCCcceecC--CCHHHHHHHHHHHhh--cCCC----CHHHHHHHhhcCCCCccchHHHHHHHH
Q 019334 198 IFTGNDFSTIYAPLIRDGRMEKFYWQ--PNLEDILNIVHRMYE--KDGI----TKDEVGSIVKTFPNQALDFYGALRSRT 269 (342)
Q Consensus 198 IatTNr~~~LdpaLlRpGRfD~~i~v--P~~~~R~~Il~~~~~--~~~~----s~~di~~lvd~f~~~~~df~gAlrs~~ 269 (342)
|+||||||.||||++||||||+.+|| |+.++|.+||+.+++ ..++ +.++|.+... --.|.||..|.+
T Consensus 651 iaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~-----c~gftGADLaaL 725 (802)
T KOG0733|consen 651 IAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTK-----CEGFTGADLAAL 725 (802)
T ss_pred EeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhccc-----ccCCchhhHHHH
Confidence 99999999999999999999999886 999999999999999 3333 4445544331 125678888888
Q ss_pred HHHHHHHHHHHcCCcchhhhhhhcccCCCCCCccc--CCcCCHHHHHHHHHHH---HHHHHHHHhhhhHHHH
Q 019334 270 YDRSISKWIDDIGGVENLGNKLLKRRKDKELPVFT--PPEKTVEALLESGYSL---LREQQLIMETKLSKEY 336 (342)
Q Consensus 270 ~~e~ir~w~~~~~g~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~l~~~g~~l---~~eq~~v~~~~l~~~y 336 (342)
+.|+.-..+++. |.+.+...+--... +-.+|-.|+-++=+.+ +.||++.+--+|.+.|
T Consensus 726 vreAsi~AL~~~---------~~~~~~~~~~~~~~~~~~~~t~~hF~eA~~~i~pSv~~~dr~~Yd~l~k~~ 788 (802)
T KOG0733|consen 726 VREASILALRES---------LFEIDSSEDDVTVRSSTIIVTYKHFEEAFQRIRPSVSERDRKKYDRLNKSR 788 (802)
T ss_pred HHHHHHHHHHHH---------HhhccccCcccceeeeeeeecHHHHHHHHHhcCCCccHHHHHHHHHHhhhh
Confidence 888754444332 11112211001111 1234445555555544 4677776666666554
No 6
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.4e-48 Score=396.56 Aligned_cols=177 Identities=21% Similarity=0.253 Sum_probs=157.7
Q ss_pred hcCCCCCeEEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccccccCCcHHHHHHHHHHHHHhhhhcCCceEEEeecc
Q 019334 68 LLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDI 147 (342)
Q Consensus 68 ~~~~k~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~~~GEsEr~iR~~F~~A~e~~~~~~~PcILfIDEI 147 (342)
.+|+.||+||+||||||||||++|+|+|+++|+||+.|+++||+|++.||||+.||++|++|.. .+|||+|||||
T Consensus 217 ~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGvSGESEkkiRelF~~A~~-----~aPcivFiDeI 291 (802)
T KOG0733|consen 217 SLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVSGESEKKIRELFDQAKS-----NAPCIVFIDEI 291 (802)
T ss_pred hcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcccCcccHHHHHHHHHHHhc-----cCCeEEEeecc
Confidence 4699999999999999999999999999999999999999999999999999999999999974 46999999999
Q ss_pred cccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCCccCCCCCCCCcceec--CCC
Q 019334 148 DAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYW--QPN 225 (342)
Q Consensus 148 DAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~~~LdpaLlRpGRfD~~i~--vP~ 225 (342)
||+.++|.+.|..++ |++++||+++||++++.. .. ..+|.||+||||||.|||||+|+||||++|. +|+
T Consensus 292 DAI~pkRe~aqreME-rRiVaQLlt~mD~l~~~~-------~~-g~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~ 362 (802)
T KOG0733|consen 292 DAITPKREEAQREME-RRIVAQLLTSMDELSNEK-------TK-GDPVLVIGATNRPDSLDPALRRAGRFDREICLGVPS 362 (802)
T ss_pred cccccchhhHHHHHH-HHHHHHHHHhhhcccccc-------cC-CCCeEEEecCCCCcccCHHHhccccccceeeecCCc
Confidence 999999998887775 668899999999864432 11 4689999999999999999999999999886 599
Q ss_pred HHHHHHHHHHHhhcCC----CCHHHHHHHhhcCCCCc
Q 019334 226 LEDILNIVHRMYEKDG----ITKDEVGSIVKTFPNQA 258 (342)
Q Consensus 226 ~~~R~~Il~~~~~~~~----~s~~di~~lvd~f~~~~ 258 (342)
+.+|.+||+++++... ++...|++|+.+|-|++
T Consensus 363 e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfVGAD 399 (802)
T KOG0733|consen 363 ETAREEILRIICRGLRLSGDFDFKQLAKLTPGFVGAD 399 (802)
T ss_pred hHHHHHHHHHHHhhCCCCCCcCHHHHHhcCCCccchh
Confidence 9999999999998664 55678888887777753
No 7
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.7e-45 Score=380.95 Aligned_cols=266 Identities=20% Similarity=0.239 Sum_probs=199.5
Q ss_pred HHHhhhhhhhhcccccccHHHH-HHHHHHHHHHHHHhh------------cCCCCCeEEEeecCCCCCHHHHHHHHHHHh
Q 019334 32 RQKVTRSFEYLQGDYYIAPVFM-ASLLCHIVKNYIAHL------------LNVKVPLILGIWGGKGQGKSFQTELIFQAM 98 (342)
Q Consensus 32 ~~~~~r~f~~~~~~~y~~~~f~-d~l~~hi~K~~l~~~------------~~~k~PlglgL~GPPG~GKTllaravA~~~ 98 (342)
.++-++.|.+.++.=-+|.--+ |++|+.-+|.-+.+. .|++.--||+||||||||||++|||||.||
T Consensus 650 ls~~~~~fs~aiGAPKIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEc 729 (953)
T KOG0736|consen 650 LSRLQKEFSDAIGAPKIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATEC 729 (953)
T ss_pred HHHHHHhhhhhcCCCCCCccchhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhc
Confidence 3456678889888877776444 566888888877662 244444699999999999999999999999
Q ss_pred CCceEEeecccccccccCCcHHHHHHHHHHHHHhhhhcCCceEEEeecccccCCCCC--CCcccchhHHHHHHHHhhcCC
Q 019334 99 GIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG--NTQMTVNNQIVVGTLMNLSDN 176 (342)
Q Consensus 99 g~~~i~vs~~eL~s~~~GEsEr~iR~~F~~A~e~~~~~~~PcILfIDEIDAg~~r~~--~t~~~v~~q~V~~tLl~llD~ 176 (342)
.++|++|.|+||+++|+||||+++|++|++|+++ +||||||||||+++|.|| +++++|-+| |+.+||..||+
T Consensus 730 sL~FlSVKGPELLNMYVGqSE~NVR~VFerAR~A-----~PCVIFFDELDSlAP~RG~sGDSGGVMDR-VVSQLLAELDg 803 (953)
T KOG0736|consen 730 SLNFLSVKGPELLNMYVGQSEENVREVFERARSA-----APCVIFFDELDSLAPNRGRSGDSGGVMDR-VVSQLLAELDG 803 (953)
T ss_pred eeeEEeecCHHHHHHHhcchHHHHHHHHHHhhcc-----CCeEEEeccccccCccCCCCCCccccHHH-HHHHHHHHhhc
Confidence 9999999999999999999999999999999854 599999999999999888 677777665 77899999996
Q ss_pred CCccccCccccccCCCCCccEEEeeCCCCCCccCCCCCCCCcceecC-C--CHHHHHHHHHHHhhcCC----CCHHHHHH
Q 019334 177 PTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQ-P--NLEDILNIVHRMYEKDG----ITKDEVGS 249 (342)
Q Consensus 177 p~~v~l~g~~~~~~~~~~V~VIatTNr~~~LdpaLlRpGRfD~~i~v-P--~~~~R~~Il~~~~~~~~----~s~~di~~ 249 (342)
. ..+....||||+||||||-|||||+|||||||.+|+ | |.+.+..||+..+++-. ++..+|++
T Consensus 804 l----------s~~~s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL~eiAk 873 (953)
T KOG0736|consen 804 L----------SDSSSQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDLVEIAK 873 (953)
T ss_pred c----------cCCCCCceEEEecCCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcCHHHHHh
Confidence 2 122367899999999999999999999999999987 4 78999999999988665 45555555
Q ss_pred Hhh-cCCCCccchHHHHHHHHHHHHHHHHHHHcCCcchhhhhhhcccCCCCCCcccCCcCCHHHHHHHHHHHH---HHHH
Q 019334 250 IVK-TFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLL---REQQ 325 (342)
Q Consensus 250 lvd-~f~~~~~df~gAlrs~~~~e~ir~w~~~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~l~---~eq~ 325 (342)
.++ .|.|+ |+| ||=|..+-.++++=++.+ - +++... .+. .=.....+-++++++-+.|. .||+
T Consensus 874 ~cp~~~TGA--DlY-sLCSdA~l~AikR~i~~i-e-~g~~~~----~e~----~~~~v~V~~eDflks~~~l~PSvS~~E 940 (953)
T KOG0736|consen 874 KCPPNMTGA--DLY-SLCSDAMLAAIKRTIHDI-E-SGTISE----EEQ----ESSSVRVTMEDFLKSAKRLQPSVSEQE 940 (953)
T ss_pred hCCcCCchh--HHH-HHHHHHHHHHHHHHHHHh-h-hccccc----ccc----CCceEEEEHHHHHHHHHhcCCcccHHH
Confidence 543 34443 443 343444444444444443 0 000000 111 11356778888888888773 4555
Q ss_pred H
Q 019334 326 L 326 (342)
Q Consensus 326 ~ 326 (342)
.
T Consensus 941 L 941 (953)
T KOG0736|consen 941 L 941 (953)
T ss_pred H
Confidence 4
No 8
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.1e-44 Score=341.01 Aligned_cols=214 Identities=19% Similarity=0.259 Sum_probs=170.2
Q ss_pred HHHHHHHHHHHHHHHHh-------------hcCCCCCeEEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccccccCC
Q 019334 51 VFMASLLCHIVKNYIAH-------------LLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGE 117 (342)
Q Consensus 51 ~f~d~l~~hi~K~~l~~-------------~~~~k~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~~~GE 117 (342)
++.|++++.+-|.-+.+ ..|+.||+||++|||||||||++++|+|+...+.||+|.++|++.||.||
T Consensus 153 sy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvqkylge 232 (408)
T KOG0727|consen 153 SYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGE 232 (408)
T ss_pred cccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHhcc
Confidence 34555666555554433 46899999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHhhhhcCCceEEEeecccccCC-CCC-CCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCc
Q 019334 118 PGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLG-RFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRI 195 (342)
Q Consensus 118 sEr~iR~~F~~A~e~~~~~~~PcILfIDEIDAg~~-r~~-~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V 195 (342)
+.|++|++||.|++. +|+|||||||||++. ||+ .|+.+.+-|++.-.|||.||| .+++.+|
T Consensus 233 gprmvrdvfrlaken-----apsiifideidaiatkrfdaqtgadrevqril~ellnqmdg------------fdq~~nv 295 (408)
T KOG0727|consen 233 GPRMVRDVFRLAKEN-----APSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDG------------FDQTTNV 295 (408)
T ss_pred CcHHHHHHHHHHhcc-----CCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccC------------cCcccce
Confidence 999999999999875 599999999999885 677 676655555555556665553 3447899
Q ss_pred cEEEeeCCCCCCccCCCCCCCCcceec--CCCHHHHHHHHHHHhhcCCCCH-HHHHHHh---hcCCCCccch------HH
Q 019334 196 PIIFTGNDFSTIYAPLIRDGRMEKFYW--QPNLEDILNIVHRMYEKDGITK-DEVGSIV---KTFPNQALDF------YG 263 (342)
Q Consensus 196 ~VIatTNr~~~LdpaLlRpGRfD~~i~--vP~~~~R~~Il~~~~~~~~~s~-~di~~lv---d~f~~~~~df------~g 263 (342)
.||+||||.++|||||+||||+|+.|. .||+.+++-+|+.++.++.++. .|++.+| |..+|++|.- +.
T Consensus 296 kvimatnradtldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdle~~v~rpdkis~adi~aicqeagm~ 375 (408)
T KOG0727|consen 296 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDLEDLVARPDKISGADINAICQEAGML 375 (408)
T ss_pred EEEEecCcccccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccCHHHHhcCccccchhhHHHHHHHHhHH
Confidence 999999999999999999999999886 4899999999999999888764 6777776 4555555433 23
Q ss_pred HHHHHHHHHHHHHHHHHc
Q 019334 264 ALRSRTYDRSISKWIDDI 281 (342)
Q Consensus 264 Alrs~~~~e~ir~w~~~~ 281 (342)
|+|...|-...++|.+..
T Consensus 376 avr~nryvvl~kd~e~ay 393 (408)
T KOG0727|consen 376 AVRENRYVVLQKDFEKAY 393 (408)
T ss_pred HHHhcceeeeHHHHHHHH
Confidence 555555554455555544
No 9
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-42 Score=360.60 Aligned_cols=214 Identities=17% Similarity=0.246 Sum_probs=176.8
Q ss_pred HHHHHHHHHHHHHHHHhh-------------cCCCCCeEEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccccccCC
Q 019334 51 VFMASLLCHIVKNYIAHL-------------LNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGE 117 (342)
Q Consensus 51 ~f~d~l~~hi~K~~l~~~-------------~~~k~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~~~GE 117 (342)
+.-|.+|++-+|+.+.+. .+++.+.|++||||||||||++|-|+|..+++.||+|.|+||++||+|.
T Consensus 665 ~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyIGa 744 (952)
T KOG0735|consen 665 RWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYIGA 744 (952)
T ss_pred CceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHhcc
Confidence 356778999999999872 3567778999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHhhhhcCCceEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccE
Q 019334 118 PGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPI 197 (342)
Q Consensus 118 sEr~iR~~F~~A~e~~~~~~~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~V 197 (342)
||.++|++|.+|+. .+||||||||+|+++||||+++.+|.+| |+.+||+.|||. +. ..+|.|
T Consensus 745 SEq~vR~lF~rA~~-----a~PCiLFFDEfdSiAPkRGhDsTGVTDR-VVNQlLTelDG~-----------Eg-l~GV~i 806 (952)
T KOG0735|consen 745 SEQNVRDLFERAQS-----AKPCILFFDEFDSIAPKRGHDSTGVTDR-VVNQLLTELDGA-----------EG-LDGVYI 806 (952)
T ss_pred cHHHHHHHHHHhhc-----cCCeEEEeccccccCcccCCCCCCchHH-HHHHHHHhhccc-----------cc-cceEEE
Confidence 99999999999973 3699999999999999999777677665 667888888861 22 678999
Q ss_pred EEeeCCCCCCccCCCCCCCCcceecC--CCHHHHHHHHHHHhhcC----CCCHHHHHHHhhcCCCCccchHHHHHHHHHH
Q 019334 198 IFTGNDFSTIYAPLIRDGRMEKFYWQ--PNLEDILNIVHRMYEKD----GITKDEVGSIVKTFPNQALDFYGALRSRTYD 271 (342)
Q Consensus 198 IatTNr~~~LdpaLlRpGRfD~~i~v--P~~~~R~~Il~~~~~~~----~~s~~di~~lvd~f~~~~~df~gAlrs~~~~ 271 (342)
+|||.|||.|||||+||||||+.++. |+..+|++||+.+..+- .++.+-+++.+++|+|++ |.+.+|+
T Consensus 807 ~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a~~T~g~tgAD------lq~ll~~ 880 (952)
T KOG0735|consen 807 LAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDLECLAQKTDGFTGAD------LQSLLYN 880 (952)
T ss_pred EEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCccccchHHHhhhcCCCchhh------HHHHHHH
Confidence 99999999999999999999998874 99999999999877643 344445555556665542 4455666
Q ss_pred HH---HHHHHHHcCCcchhhh
Q 019334 272 RS---ISKWIDDIGGVENLGN 289 (342)
Q Consensus 272 e~---ir~w~~~~~g~~~~~~ 289 (342)
.+ +.+|+.+. |.+++..
T Consensus 881 A~l~avh~~l~~~-~~~~~~p 900 (952)
T KOG0735|consen 881 AQLAAVHEILKRE-DEEGVVP 900 (952)
T ss_pred HHHHHHHHHHHhc-CccccCC
Confidence 54 79999998 5555443
No 10
>CHL00195 ycf46 Ycf46; Provisional
Probab=100.00 E-value=1.5e-40 Score=338.24 Aligned_cols=178 Identities=19% Similarity=0.254 Sum_probs=152.1
Q ss_pred cccccccHHHHHHHHHHHHHHHHHh----------hcCCCCCeEEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccc
Q 019334 43 QGDYYIAPVFMASLLCHIVKNYIAH----------LLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELES 112 (342)
Q Consensus 43 ~~~~y~~~~f~d~l~~hi~K~~l~~----------~~~~k~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s 112 (342)
.+-++.+..|.|++|...+|.|+.+ ..|++.|+|++||||||||||++|+++|+++|++++.++.+++++
T Consensus 218 le~~~~~~~~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~ 297 (489)
T CHL00195 218 LEFYSVNEKISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFG 297 (489)
T ss_pred ccccCCCCCHHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcc
Confidence 3444566789999999999999975 247889999999999999999999999999999999999999999
Q ss_pred cccCCcHHHHHHHHHHHHHhhhhcCCceEEEeecccccCCCCC-CCcccchhHHHHHHHHhhcCCCCccccCccccccCC
Q 019334 113 ERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDI 191 (342)
Q Consensus 113 ~~~GEsEr~iR~~F~~A~e~~~~~~~PcILfIDEIDAg~~r~~-~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~ 191 (342)
+|+|++|+++|++|+.|.. .+||||||||||+++++++ ...++. ..++.++|++.+++ .
T Consensus 298 ~~vGese~~l~~~f~~A~~-----~~P~IL~IDEID~~~~~~~~~~d~~~-~~rvl~~lL~~l~~-------------~- 357 (489)
T CHL00195 298 GIVGESESRMRQMIRIAEA-----LSPCILWIDEIDKAFSNSESKGDSGT-TNRVLATFITWLSE-------------K- 357 (489)
T ss_pred cccChHHHHHHHHHHHHHh-----cCCcEEEehhhhhhhccccCCCCchH-HHHHHHHHHHHHhc-------------C-
Confidence 9999999999999988864 3599999999999887543 212222 34577888876552 2
Q ss_pred CCCccEEEeeCCCCCCccCCCCCCCCcceecC--CCHHHHHHHHHHHhhcC
Q 019334 192 TNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQ--PNLEDILNIVHRMYEKD 240 (342)
Q Consensus 192 ~~~V~VIatTNr~~~LdpaLlRpGRfD~~i~v--P~~~~R~~Il~~~~~~~ 240 (342)
..+|+||+|||+++.|||||+|+||||+++++ |+.++|.+||+.++++.
T Consensus 358 ~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~ 408 (489)
T CHL00195 358 KSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKF 408 (489)
T ss_pred CCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhc
Confidence 56899999999999999999999999998875 99999999999988754
No 11
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.9e-40 Score=330.57 Aligned_cols=213 Identities=19% Similarity=0.230 Sum_probs=172.5
Q ss_pred cccHHHHHHHHHHHHHHHHHhh-------------cCCCCCeEEEeecCCCCCHHHHHHHHHHHhCCceEEeeccccccc
Q 019334 47 YIAPVFMASLLCHIVKNYIAHL-------------LNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESE 113 (342)
Q Consensus 47 y~~~~f~d~l~~hi~K~~l~~~-------------~~~k~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~ 113 (342)
.....+.|.+++...|.++.+. .++++|+|++||||||||||++|+|+|.+++.+|+.+++++++++
T Consensus 236 ~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk 315 (494)
T COG0464 236 DEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSK 315 (494)
T ss_pred CCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhcc
Confidence 3446677888888888888762 268899999999999999999999999999999999999999999
Q ss_pred ccCCcHHHHHHHHHHHHHhhhhcCCceEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCC
Q 019334 114 RAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITN 193 (342)
Q Consensus 114 ~~GEsEr~iR~~F~~A~e~~~~~~~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~ 193 (342)
|+||+|++||++|+.|++ .+||||||||||++++.++.+..+ ...+++++|+..||+ .+...
T Consensus 316 ~vGesek~ir~~F~~A~~-----~~p~iiFiDEiDs~~~~r~~~~~~-~~~r~~~~lL~~~d~------------~e~~~ 377 (494)
T COG0464 316 WVGESEKNIRELFEKARK-----LAPSIIFIDEIDSLASGRGPSEDG-SGRRVVGQLLTELDG------------IEKAE 377 (494)
T ss_pred ccchHHHHHHHHHHHHHc-----CCCcEEEEEchhhhhccCCCCCch-HHHHHHHHHHHHhcC------------CCccC
Confidence 999999999999999974 569999999999999887733322 235788999999885 12267
Q ss_pred CccEEEeeCCCCCCccCCCCCCCCcceecC--CCHHHHHHHHHHHhhcCCC---CHHHHHHHhhcCCCCccchHHHHHHH
Q 019334 194 RIPIIFTGNDFSTIYAPLIRDGRMEKFYWQ--PNLEDILNIVHRMYEKDGI---TKDEVGSIVKTFPNQALDFYGALRSR 268 (342)
Q Consensus 194 ~V~VIatTNr~~~LdpaLlRpGRfD~~i~v--P~~~~R~~Il~~~~~~~~~---s~~di~~lvd~f~~~~~df~gAlrs~ 268 (342)
+|+||+|||+|+.||||++||||||+.+++ ||.++|.+||+.+++.... ...+++.++. .+-+|+||.-..
T Consensus 378 ~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~----~t~~~sgadi~~ 453 (494)
T COG0464 378 GVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAE----ITEGYSGADIAA 453 (494)
T ss_pred ceEEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHH----HhcCCCHHHHHH
Confidence 899999999999999999999999998886 8999999999999995432 2344444443 122366776677
Q ss_pred HHHHHHHHHHHHc
Q 019334 269 TYDRSISKWIDDI 281 (342)
Q Consensus 269 ~~~e~ir~w~~~~ 281 (342)
++.++...-+.+.
T Consensus 454 i~~ea~~~~~~~~ 466 (494)
T COG0464 454 LVREAALEALREA 466 (494)
T ss_pred HHHHHHHHHHHHh
Confidence 7777665555544
No 12
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-41 Score=325.72 Aligned_cols=197 Identities=20% Similarity=0.296 Sum_probs=169.4
Q ss_pred cCCCCCeEEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccccccCCcHHHHHHHHHHHHHhhhhcCCceEEEeeccc
Q 019334 69 LNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDID 148 (342)
Q Consensus 69 ~~~k~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~~~GEsEr~iR~~F~~A~e~~~~~~~PcILfIDEID 148 (342)
.|+++|+||.|||+||+|||++|+|||++..+.|+++.++||+.+|.|+..|++|++|+.|.+. +|+|+||||||
T Consensus 214 mGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQkylGdGpklvRqlF~vA~e~-----apSIvFiDEId 288 (440)
T KOG0726|consen 214 MGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEH-----APSIVFIDEID 288 (440)
T ss_pred cCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHHHHhccchHHHHHHHHHHHhc-----CCceEEeehhh
Confidence 4899999999999999999999999999999999999999999999999999999999999876 49999999999
Q ss_pred ccC-CCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCCccCCCCCCCCcceec--CCC
Q 019334 149 AGL-GRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYW--QPN 225 (342)
Q Consensus 149 Ag~-~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~~~LdpaLlRpGRfD~~i~--vP~ 225 (342)
|+. .|+++.+++ .|.++.|+|++++ ||+| | +....|.||+||||+++|||||+||||+|+.|. .||
T Consensus 289 AiGtKRyds~Sgg--erEiQrtmLELLN-----QldG-F---dsrgDvKvimATnrie~LDPaLiRPGrIDrKIef~~pD 357 (440)
T KOG0726|consen 289 AIGTKRYDSNSGG--EREIQRTMLELLN-----QLDG-F---DSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPD 357 (440)
T ss_pred hhccccccCCCcc--HHHHHHHHHHHHH-----hccC-c---cccCCeEEEEecccccccCHhhcCCCccccccccCCCc
Confidence 955 466733332 3677788888777 7777 3 335689999999999999999999999999775 499
Q ss_pred HHHHHHHHHHHhhcCC----CCHHHHHHHhhcCCCCccchH------HHHHHHHHHHHHHHHHHHc
Q 019334 226 LEDILNIVHRMYEKDG----ITKDEVGSIVKTFPNQALDFY------GALRSRTYDRSISKWIDDI 281 (342)
Q Consensus 226 ~~~R~~Il~~~~~~~~----~s~~di~~lvd~f~~~~~df~------gAlrs~~~~e~ir~w~~~~ 281 (342)
...|..||++|+..+. ++.+++...-|.|+|++|.-. -|||.+.+.....+|.++.
T Consensus 358 e~TkkkIf~IHTs~Mtl~~dVnle~li~~kddlSGAdIkAictEaGllAlRerRm~vt~~DF~ka~ 423 (440)
T KOG0726|consen 358 EKTKKKIFQIHTSRMTLAEDVNLEELIMTKDDLSGADIKAICTEAGLLALRERRMKVTMEDFKKAK 423 (440)
T ss_pred hhhhceeEEEeecccchhccccHHHHhhcccccccccHHHHHHHHhHHHHHHHHhhccHHHHHHHH
Confidence 9999999998887664 556677666689999987552 4899999998888888876
No 13
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.4e-41 Score=318.72 Aligned_cols=183 Identities=20% Similarity=0.312 Sum_probs=156.9
Q ss_pred hcCCCCCeEEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccccccCCcHHHHHHHHHHHHHhhhhcCCceEEEeecc
Q 019334 68 LLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDI 147 (342)
Q Consensus 68 ~~~~k~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~~~GEsEr~iR~~F~~A~e~~~~~~~PcILfIDEI 147 (342)
-+|+++|+|+++|||||+|||++|||+|++.++.|+.+.++.|+.+|+|++.|++|++|..|.+ .+|||||||||
T Consensus 199 ~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQMfIGdGAkLVRDAFaLAKE-----kaP~IIFIDEl 273 (424)
T KOG0652|consen 199 NLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFALAKE-----KAPTIIFIDEL 273 (424)
T ss_pred hcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHHhhhhcchHHHHHHHHHHhhc-----cCCeEEEEech
Confidence 3699999999999999999999999999999999999999999999999999999999999976 46999999999
Q ss_pred cccC-CCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCCccCCCCCCCCcceec--CC
Q 019334 148 DAGL-GRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYW--QP 224 (342)
Q Consensus 148 DAg~-~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~~~LdpaLlRpGRfD~~i~--vP 224 (342)
||+. .|+++... .+|.|+.|+|++++ ||+| | ....+|.|||||||.+.|||||+|.||+|+.|. .|
T Consensus 274 DAIGtKRfDSek~--GDREVQRTMLELLN-----QLDG-F---ss~~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~P 342 (424)
T KOG0652|consen 274 DAIGTKRFDSEKA--GDREVQRTMLELLN-----QLDG-F---SSDDRVKVIAATNRVDILDPALLRSGRLDRKIEFPHP 342 (424)
T ss_pred hhhcccccccccc--ccHHHHHHHHHHHH-----hhcC-C---CCccceEEEeecccccccCHHHhhcccccccccCCCC
Confidence 9954 57774433 24667777777766 6666 3 235789999999999999999999999999886 39
Q ss_pred CHHHHHHHHHHHhhcCC----CCHHHHHHHhhcCCCCccch------HHHHH
Q 019334 225 NLEDILNIVHRMYEKDG----ITKDEVGSIVKTFPNQALDF------YGALR 266 (342)
Q Consensus 225 ~~~~R~~Il~~~~~~~~----~s~~di~~lvd~f~~~~~df------~gAlr 266 (342)
++++|..|+++|.+++. ++.+|+.+.+|.|+|+.+.- +-|||
T Consensus 343 ne~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQcKAVcVEAGMiALR 394 (424)
T KOG0652|consen 343 NEEARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQCKAVCVEAGMIALR 394 (424)
T ss_pred ChHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchhheeeehhhhHHHHh
Confidence 99999999999998775 56689999999999876432 34676
No 14
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.5e-40 Score=311.79 Aligned_cols=197 Identities=20% Similarity=0.252 Sum_probs=162.7
Q ss_pred hcCCCCCeEEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccccccCCcHHHHHHHHHHHHHhhhhcCCceEEEeecc
Q 019334 68 LLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDI 147 (342)
Q Consensus 68 ~~~~k~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~~~GEsEr~iR~~F~~A~e~~~~~~~PcILfIDEI 147 (342)
.+|+--|+|++||||||+|||++|+|+|....+.||+||++||+.+|+||..|++|++|-.|++++ |+|||.|||
T Consensus 175 aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgselvqk~igegsrmvrelfvmareha-----psiifmdei 249 (404)
T KOG0728|consen 175 ALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHA-----PSIIFMDEI 249 (404)
T ss_pred hcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHHHHhhhhHHHHHHHHHHHHhcC-----CceEeeecc
Confidence 578999999999999999999999999999999999999999999999999999999999999864 999999999
Q ss_pred cccCCCCC--CCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCCccCCCCCCCCcceecC--
Q 019334 148 DAGLGRFG--NTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQ-- 223 (342)
Q Consensus 148 DAg~~r~~--~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~~~LdpaLlRpGRfD~~i~v-- 223 (342)
|++...|. +++++. .|+.|+|++++ ||+| .+.++++.||+||||++.|||||+||||+|+.|..
T Consensus 250 dsigs~r~e~~~ggds---evqrtmlelln-----qldg----featknikvimatnridild~allrpgridrkiefp~ 317 (404)
T KOG0728|consen 250 DSIGSSRVESGSGGDS---EVQRTMLELLN-----QLDG----FEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPP 317 (404)
T ss_pred cccccccccCCCCccH---HHHHHHHHHHH-----hccc----cccccceEEEEeccccccccHhhcCCCcccccccCCC
Confidence 99766443 334333 45555555555 5555 23378999999999999999999999999998863
Q ss_pred CCHHHHHHHHHHHhhcCCCC----HHHHHHHhhcCCCCccch------HHHHHHHHHHHHHHHHHHHc
Q 019334 224 PNLEDILNIVHRMYEKDGIT----KDEVGSIVKTFPNQALDF------YGALRSRTYDRSISKWIDDI 281 (342)
Q Consensus 224 P~~~~R~~Il~~~~~~~~~s----~~di~~lvd~f~~~~~df------~gAlrs~~~~e~ir~w~~~~ 281 (342)
|++++|.+||++|.+++++. ...|+.-..+.+|+.+.- +.|||.|..+...++|.-.+
T Consensus 318 p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~vcteagm~alrerrvhvtqedfemav 385 (404)
T KOG0728|consen 318 PNEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAV 385 (404)
T ss_pred CCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhhhhhhhhhHHHHHHhhccccHHHHHHHH
Confidence 89999999999999988654 344444444555555322 45999999999889998877
No 15
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.9e-40 Score=335.64 Aligned_cols=190 Identities=19% Similarity=0.216 Sum_probs=156.7
Q ss_pred HHHHHHHHHHHHHHHHh------------hcCCCCCeEEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccccccCCc
Q 019334 51 VFMASLLCHIVKNYIAH------------LLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEP 118 (342)
Q Consensus 51 ~f~d~l~~hi~K~~l~~------------~~~~k~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~~~GEs 118 (342)
.|-|+-+..-+|.=|.+ .+|-|.|+||||.||||||||+||||||+|.|+||+.++++|+..+|+|-.
T Consensus 302 ~F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~VGvG 381 (752)
T KOG0734|consen 302 TFEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMFVGVG 381 (752)
T ss_pred ccccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhhhhccc
Confidence 47777777777777765 367899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhcCCceEEEeecccccCCCCC-CCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccE
Q 019334 119 GKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPI 197 (342)
Q Consensus 119 Er~iR~~F~~A~e~~~~~~~PcILfIDEIDAg~~r~~-~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~V 197 (342)
+|+||++|+.|+ +.+|||||||||||+.++|. ..+. ..+|.+ .+||..||| ..++.+|.|
T Consensus 382 ArRVRdLF~aAk-----~~APcIIFIDEiDavG~kR~~~~~~-y~kqTl-NQLLvEmDG------------F~qNeGiIv 442 (752)
T KOG0734|consen 382 ARRVRDLFAAAK-----ARAPCIIFIDEIDAVGGKRNPSDQH-YAKQTL-NQLLVEMDG------------FKQNEGIIV 442 (752)
T ss_pred HHHHHHHHHHHH-----hcCCeEEEEechhhhcccCCccHHH-HHHHHH-HHHHHHhcC------------cCcCCceEE
Confidence 999999998887 45799999999999877765 4443 234544 467777775 333679999
Q ss_pred EEeeCCCCCCccCCCCCCCCcceecC--CCHHHHHHHHHHHhhcCCCC-HHHHHHHh---hcCCCCcc
Q 019334 198 IFTGNDFSTIYAPLIRDGRMEKFYWQ--PNLEDILNIVHRMYEKDGIT-KDEVGSIV---KTFPNQAL 259 (342)
Q Consensus 198 IatTNr~~~LdpaLlRpGRfD~~i~v--P~~~~R~~Il~~~~~~~~~s-~~di~~lv---d~f~~~~~ 259 (342)
|+|||+|++||+||+||||||+.+.| ||...|.+||..|+.+...+ +.|+.-+. .+|+|+++
T Consensus 443 igATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFsGAdL 510 (752)
T KOG0734|consen 443 IGATNFPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKIIARGTPGFSGADL 510 (752)
T ss_pred EeccCChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHHhcCCcccCCCHhHhccCCCCCchHHH
Confidence 99999999999999999999999987 89999999999999876554 34444444 44544443
No 16
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-40 Score=317.62 Aligned_cols=197 Identities=20% Similarity=0.292 Sum_probs=161.4
Q ss_pred hcCCCCCeEEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccccccCCcHHHHHHHHHHHHHhhhhcCCceEEEeecc
Q 019334 68 LLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDI 147 (342)
Q Consensus 68 ~~~~k~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~~~GEsEr~iR~~F~~A~e~~~~~~~PcILfIDEI 147 (342)
.+|+.+|+|+++|||||+|||+.|||+|+..++.||+|-++||+.+|+||..|++|++|+.|+ .++-||||||||
T Consensus 205 ~lgidppkgvllygppgtgktl~aravanrtdacfirvigselvqkyvgegarmvrelf~mar-----tkkaciiffdei 279 (435)
T KOG0729|consen 205 NLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMAR-----TKKACIIFFDEI 279 (435)
T ss_pred hcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHHHHHhhhhHHHHHHHHHHhc-----ccceEEEEeecc
Confidence 368999999999999999999999999999999999999999999999999999999998886 568999999999
Q ss_pred cccCC-CCC-CCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCCccCCCCCCCCcceec--C
Q 019334 148 DAGLG-RFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYW--Q 223 (342)
Q Consensus 148 DAg~~-r~~-~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~~~LdpaLlRpGRfD~~i~--v 223 (342)
||+.+ ||+ +.+++. .|+.|+|+++. ||+| .+...++.|++|||||++|||||+||||+|+.+. +
T Consensus 280 daiggarfddg~ggdn---evqrtmleli~-----qldg----fdprgnikvlmatnrpdtldpallrpgrldrkvef~l 347 (435)
T KOG0729|consen 280 DAIGGARFDDGAGGDN---EVQRTMLELIN-----QLDG----FDPRGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGL 347 (435)
T ss_pred ccccCccccCCCCCcH---HHHHHHHHHHH-----hccC----CCCCCCeEEEeecCCCCCcCHhhcCCcccccceeccC
Confidence 99554 787 555543 35555555554 5555 3446789999999999999999999999999664 6
Q ss_pred CCHHHHHHHHHHHhhcCCCCH----HHHHHHhhcCCCCccch------HHHHHHHHHHHHHHHHHHHc
Q 019334 224 PNLEDILNIVHRMYEKDGITK----DEVGSIVKTFPNQALDF------YGALRSRTYDRSISKWIDDI 281 (342)
Q Consensus 224 P~~~~R~~Il~~~~~~~~~s~----~di~~lvd~f~~~~~df------~gAlrs~~~~e~ir~w~~~~ 281 (342)
||.+.|..||++|.+++.+.. +-+++|...-.|+.+.. +.|+|+|.--..-++|+..+
T Consensus 348 pdlegrt~i~kihaksmsverdir~ellarlcpnstgaeirsvcteagmfairarrk~atekdfl~av 415 (435)
T KOG0729|consen 348 PDLEGRTHIFKIHAKSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKVATEKDFLDAV 415 (435)
T ss_pred CcccccceeEEEeccccccccchhHHHHHhhCCCCcchHHHHHHHHhhHHHHHHHhhhhhHHHHHHHH
Confidence 999999999999999887643 55566654444554433 45888877776677888776
No 17
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-39 Score=320.43 Aligned_cols=201 Identities=17% Similarity=0.196 Sum_probs=167.7
Q ss_pred HHHHHHHHHHHHHHHHhh-----------cCCCCC-eEEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccccccCCc
Q 019334 51 VFMASLLCHIVKNYIAHL-----------LNVKVP-LILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEP 118 (342)
Q Consensus 51 ~f~d~l~~hi~K~~l~~~-----------~~~k~P-lglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~~~GEs 118 (342)
.+-|+.++|-+|..|.++ -|+..| +||+++||||||||+||||||.|||..|+.||++.|.|||-|||
T Consensus 210 kW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstltSKwRGeS 289 (491)
T KOG0738|consen 210 KWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLTSKWRGES 289 (491)
T ss_pred ChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhhhhhccch
Confidence 456778999999999872 155555 79999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhcCCceEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEE
Q 019334 119 GKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPII 198 (342)
Q Consensus 119 Er~iR~~F~~A~e~~~~~~~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VI 198 (342)
||+||-+|+.|+-. +|++|||||||++|++||+.+....+|+|.+.||-+||| +.++ .+..+.|+|+
T Consensus 290 EKlvRlLFemARfy-----APStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG-----~~~t---~e~~k~VmVL 356 (491)
T KOG0738|consen 290 EKLVRLLFEMARFY-----APSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDG-----VQGT---LENSKVVMVL 356 (491)
T ss_pred HHHHHHHHHHHHHh-----CCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhc-----cccc---cccceeEEEE
Confidence 99999999999855 599999999999999999665555678999999988886 2232 2213569999
Q ss_pred EeeCCCCCCccCCCCCCCCcceecC--CCHHHHHHHHHHHhhcCC----CCHHHHHHHhhcCCCCccchHHHHHHHHHHH
Q 019334 199 FTGNDFSTIYAPLIRDGRMEKFYWQ--PNLEDILNIVHRMYEKDG----ITKDEVGSIVKTFPNQALDFYGALRSRTYDR 272 (342)
Q Consensus 199 atTNr~~~LdpaLlRpGRfD~~i~v--P~~~~R~~Il~~~~~~~~----~s~~di~~lvd~f~~~~~df~gAlrs~~~~e 272 (342)
||||-||.||.||+| ||+|.||+ ||.++|..++++.+++-. +..++|+.-.++|+|. ....+|.+
T Consensus 357 AATN~PWdiDEAlrR--RlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySGa-------DI~nvCre 427 (491)
T KOG0738|consen 357 AATNFPWDIDEALRR--RLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDLAERSEGYSGA-------DITNVCRE 427 (491)
T ss_pred eccCCCcchHHHHHH--HHhhheeeeCCCHHHHHHHHHHhhccccCCCCccHHHHHHHhcCCChH-------HHHHHHHH
Confidence 999999999999999 99998886 899999999999888654 5556776666676664 44555555
Q ss_pred H
Q 019334 273 S 273 (342)
Q Consensus 273 ~ 273 (342)
+
T Consensus 428 A 428 (491)
T KOG0738|consen 428 A 428 (491)
T ss_pred H
Confidence 5
No 18
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-38 Score=334.45 Aligned_cols=191 Identities=18% Similarity=0.245 Sum_probs=157.5
Q ss_pred HHHHHHHHHHHHHHHHh------------hcCCCCCeEEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccccccCCc
Q 019334 51 VFMASLLCHIVKNYIAH------------LLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEP 118 (342)
Q Consensus 51 ~f~d~l~~hi~K~~l~~------------~~~~k~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~~~GEs 118 (342)
.|.|+.+.+-+|.=+.+ ..|.++|+|++|+||||||||+||||+|+|.|+||+.||++|++..++|-.
T Consensus 309 ~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~~g~~ 388 (774)
T KOG0731|consen 309 KFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMFVGVG 388 (774)
T ss_pred ccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHhcccc
Confidence 48888888877776665 369999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhcCCceEEEeecccccCCCC-C-C--CcccchhHHHHHHHHhhcCCCCccccCccccccCCCCC
Q 019334 119 GKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRF-G-N--TQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNR 194 (342)
Q Consensus 119 Er~iR~~F~~A~e~~~~~~~PcILfIDEIDAg~~r~-~-~--t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~ 194 (342)
..++|++|..|+. .+|||||||||||...++ | . .+.+...+ ...+|+..||+ ...+..
T Consensus 389 asrvr~lf~~ar~-----~aP~iifideida~~~~r~G~~~~~~~~e~e~-tlnQll~emDg------------f~~~~~ 450 (774)
T KOG0731|consen 389 ASRVRDLFPLARK-----NAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQ-TLNQLLVEMDG------------FETSKG 450 (774)
T ss_pred hHHHHHHHHHhhc-----cCCeEEEecccccccccccccccCCCChHHHH-HHHHHHHHhcC------------CcCCCc
Confidence 9999999999984 569999999999988766 3 1 22233334 44577777775 222578
Q ss_pred ccEEEeeCCCCCCccCCCCCCCCcceecC--CCHHHHHHHHHHHhhcCCC--CHHHHHH---HhhcCCCCcc
Q 019334 195 IPIIFTGNDFSTIYAPLIRDGRMEKFYWQ--PNLEDILNIVHRMYEKDGI--TKDEVGS---IVKTFPNQAL 259 (342)
Q Consensus 195 V~VIatTNr~~~LdpaLlRpGRfD~~i~v--P~~~~R~~Il~~~~~~~~~--s~~di~~---lvd~f~~~~~ 259 (342)
|.|+++||||+.|||||+||||||+.+++ |+...|.+||+.|.++-.+ ...|+.+ ++.+|+|+++
T Consensus 451 vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl 522 (774)
T KOG0731|consen 451 VIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADL 522 (774)
T ss_pred EEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHH
Confidence 99999999999999999999999998886 9999999999999987766 3445555 3345555544
No 19
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6e-38 Score=324.13 Aligned_cols=246 Identities=17% Similarity=0.224 Sum_probs=192.8
Q ss_pred HHHHHHHHHHHHHHHHHh------------hcCCCCCeEEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccccccCC
Q 019334 50 PVFMASLLCHIVKNYIAH------------LLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGE 117 (342)
Q Consensus 50 ~~f~d~l~~hi~K~~l~~------------~~~~k~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~~~GE 117 (342)
-.|+|+.+..-+|..+.+ ..|.+.|+|++|.||||+|||++|||+|.+.++||+.+|+++++..++|-
T Consensus 147 v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemfVGv 226 (596)
T COG0465 147 VTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGV 226 (596)
T ss_pred cChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhhhcCC
Confidence 469999998889988877 24789999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHhhhhcCCceEEEeecccccCCCCC-C--CcccchhHHHHHHHHhhcCCCCccccCccccccCCCCC
Q 019334 118 PGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG-N--TQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNR 194 (342)
Q Consensus 118 sEr~iR~~F~~A~e~~~~~~~PcILfIDEIDAg~~r~~-~--t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~ 194 (342)
+.+.+|++|.+|++ .+|||||||||||....|+ + .+.+.-.| ...+||..||+ + ..+.+
T Consensus 227 GAsRVRdLF~qAkk-----~aP~IIFIDEiDAvGr~Rg~g~GggnderEQ-TLNQlLvEmDG---------F---~~~~g 288 (596)
T COG0465 227 GASRVRDLFEQAKK-----NAPCIIFIDEIDAVGRQRGAGLGGGNDEREQ-TLNQLLVEMDG---------F---GGNEG 288 (596)
T ss_pred CcHHHHHHHHHhhc-----cCCCeEEEehhhhcccccCCCCCCCchHHHH-HHHHHHhhhcc---------C---CCCCc
Confidence 99999999999974 5699999999999776555 3 22222224 44577777775 2 12578
Q ss_pred ccEEEeeCCCCCCccCCCCCCCCcceecC--CCHHHHHHHHHHHhhcCCC----CHHHHHHHhhcCCCCccchHHHHHHH
Q 019334 195 IPIIFTGNDFSTIYAPLIRDGRMEKFYWQ--PNLEDILNIVHRMYEKDGI----TKDEVGSIVKTFPNQALDFYGALRSR 268 (342)
Q Consensus 195 V~VIatTNr~~~LdpaLlRpGRfD~~i~v--P~~~~R~~Il~~~~~~~~~----s~~di~~lvd~f~~~~~df~gAlrs~ 268 (342)
|.||++|||||.|||||+|||||||.+.+ ||...|.+||+.|.++-.+ +...|++.+.+|+|+ ..+.
T Consensus 289 viviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~iAr~tpGfsGA-------dL~n 361 (596)
T COG0465 289 VIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKKIARGTPGFSGA-------DLAN 361 (596)
T ss_pred eEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHHHhhhCCCcccc-------hHhh
Confidence 99999999999999999999999998876 9999999999999987754 445566666666554 4444
Q ss_pred HHHHHH-------HHHHHHcCCcchhhhhhhcccCCCCCCcccCCcCCHHHHHHHHHHHHH
Q 019334 269 TYDRSI-------SKWIDDIGGVENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLR 322 (342)
Q Consensus 269 ~~~e~i-------r~w~~~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~l~~ 322 (342)
+..|+. +.|+... .++---.|++...++. ...+.+.+-.+-+--|+||.|++
T Consensus 362 l~NEAal~aar~n~~~i~~~-~i~ea~drv~~G~erk-s~vise~ek~~~AYhEaghalv~ 420 (596)
T COG0465 362 LLNEAALLAARRNKKEITMR-DIEEAIDRVIAGPERK-SRVISEAEKKITAYHEAGHALVG 420 (596)
T ss_pred hHHHHHHHHHHhcCeeEecc-chHHHHHHHhcCcCcC-CcccChhhhcchHHHHHHHHHHH
Confidence 444432 2233333 4444445666665553 34688888888899999999886
No 20
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=3.7e-37 Score=324.52 Aligned_cols=209 Identities=18% Similarity=0.226 Sum_probs=168.3
Q ss_pred HHHHHHHHHHHHHHHHhh-------------cCCCCCeEEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccccccCC
Q 019334 51 VFMASLLCHIVKNYIAHL-------------LNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGE 117 (342)
Q Consensus 51 ~f~d~l~~hi~K~~l~~~-------------~~~k~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~~~GE 117 (342)
.|.|.++..-+|..+.+. .++++|.+++||||||||||++|+++|++++++|+.+++++++++|+||
T Consensus 451 ~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~vGe 530 (733)
T TIGR01243 451 RWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWVGE 530 (733)
T ss_pred chhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhcccCc
Confidence 466777888888777552 4788999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHhhhhcCCceEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccE
Q 019334 118 PGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPI 197 (342)
Q Consensus 118 sEr~iR~~F~~A~e~~~~~~~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~V 197 (342)
+|+.||++|+.|+. .+||||||||||++++.+++.......++++.+|++.||+. .+ ..+|+|
T Consensus 531 se~~i~~~f~~A~~-----~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~-----------~~-~~~v~v 593 (733)
T TIGR01243 531 SEKAIREIFRKARQ-----AAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGI-----------QE-LSNVVV 593 (733)
T ss_pred HHHHHHHHHHHHHh-----cCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcc-----------cC-CCCEEE
Confidence 99999999999974 46999999999999987763322223456778899888851 11 468999
Q ss_pred EEeeCCCCCCccCCCCCCCCcceecC--CCHHHHHHHHHHHhhcCCCCH-HHHHHHhhcCCCCccchHHHHHHHHHHHHH
Q 019334 198 IFTGNDFSTIYAPLIRDGRMEKFYWQ--PNLEDILNIVHRMYEKDGITK-DEVGSIVKTFPNQALDFYGALRSRTYDRSI 274 (342)
Q Consensus 198 IatTNr~~~LdpaLlRpGRfD~~i~v--P~~~~R~~Il~~~~~~~~~s~-~di~~lvd~f~~~~~df~gAlrs~~~~e~i 274 (342)
|+|||+|+.||||++||||||+.+++ ||.++|.+||+.+++...++. .++..|+... ..|.||....++.++.
T Consensus 594 I~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l~~la~~t----~g~sgadi~~~~~~A~ 669 (733)
T TIGR01243 594 IAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVDLEELAEMT----EGYTGADIEAVCREAA 669 (733)
T ss_pred EEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHc----CCCCHHHHHHHHHHHH
Confidence 99999999999999999999998875 999999999999988776543 3455554322 2345666666677766
Q ss_pred HHHHHH
Q 019334 275 SKWIDD 280 (342)
Q Consensus 275 r~w~~~ 280 (342)
..++++
T Consensus 670 ~~a~~~ 675 (733)
T TIGR01243 670 MAALRE 675 (733)
T ss_pred HHHHHH
Confidence 555554
No 21
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=100.00 E-value=8e-36 Score=304.97 Aligned_cols=259 Identities=17% Similarity=0.248 Sum_probs=188.1
Q ss_pred cccccHHHHHHHHHHHHHHHHHh-------------hcCCCCCeEEEeecCCCCCHHHHHHHHHHHhCCc----------
Q 019334 45 DYYIAPVFMASLLCHIVKNYIAH-------------LLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIE---------- 101 (342)
Q Consensus 45 ~~y~~~~f~d~l~~hi~K~~l~~-------------~~~~k~PlglgL~GPPG~GKTllaravA~~~g~~---------- 101 (342)
..+.+-.|.|.+++.-.+..+.+ ..|+++|++++||||||||||++|+++|++++.+
T Consensus 174 ~~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~ 253 (512)
T TIGR03689 174 EEVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSY 253 (512)
T ss_pred ecCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCcee
Confidence 34445567776656555555433 3478999999999999999999999999998654
Q ss_pred eEEeecccccccccCCcHHHHHHHHHHHHHhhhhcCCceEEEeecccccCCCCC-CCcccchhHHHHHHHHhhcCCCCcc
Q 019334 102 PVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRV 180 (342)
Q Consensus 102 ~i~vs~~eL~s~~~GEsEr~iR~~F~~A~e~~~~~~~PcILfIDEIDAg~~r~~-~t~~~v~~q~V~~tLl~llD~p~~v 180 (342)
|+.+++++++++|.||+|+.+|.+|..|++.+. .++||||||||||+++++++ +.+++++ +.+..+|++.+|+.
T Consensus 254 fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~-~g~p~IIfIDEiD~L~~~R~~~~s~d~e-~~il~~LL~~LDgl--- 328 (512)
T TIGR03689 254 FLNIKGPELLNKYVGETERQIRLIFQRAREKAS-DGRPVIVFFDEMDSIFRTRGSGVSSDVE-TTVVPQLLSELDGV--- 328 (512)
T ss_pred EEeccchhhcccccchHHHHHHHHHHHHHHHhh-cCCCceEEEehhhhhhcccCCCccchHH-HHHHHHHHHHhccc---
Confidence 788999999999999999999999999987664 57899999999999987666 3333443 45678899988851
Q ss_pred ccCccccccCCCCCccEEEeeCCCCCCccCCCCCCCCcceecC--CCHHHHHHHHHHHhhcC-CC----------CHHHH
Q 019334 181 SIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQ--PNLEDILNIVHRMYEKD-GI----------TKDEV 247 (342)
Q Consensus 181 ~l~g~~~~~~~~~~V~VIatTNr~~~LdpaLlRpGRfD~~i~v--P~~~~R~~Il~~~~~~~-~~----------s~~di 247 (342)
....+|+||+|||+++.|||||+||||||+.|++ |+.++|.+||+.++... ++ +.+++
T Consensus 329 ---------~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l~l~~~l~~~~g~~~a~~ 399 (512)
T TIGR03689 329 ---------ESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSLPLDADLAEFDGDREATA 399 (512)
T ss_pred ---------ccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccCCchHHHHHhcCCCHHHH
Confidence 1146899999999999999999999999998775 99999999999887643 23 33444
Q ss_pred HHHhh-----cCC--------------CCc-----cch-HHHHHHHHHHHHHHHHHHHcCCcchhhhhhhcccCCCCCCc
Q 019334 248 GSIVK-----TFP--------------NQA-----LDF-YGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPV 302 (342)
Q Consensus 248 ~~lvd-----~f~--------------~~~-----~df-~gAlrs~~~~e~ir~w~~~~~g~~~~~~~l~~~~~~~~~~~ 302 (342)
..++. .|. |+. -|| +||..+.+++.+-...+++. + ..
T Consensus 400 ~al~~~av~~~~a~~~~~~~l~~~~~~g~~~~l~~~d~~sGa~i~~iv~~a~~~ai~~~---------~---~~------ 461 (512)
T TIGR03689 400 AALIQRAVDHLYATSEENRYVEVTYANGSTEVLYFKDFVSGAMIANIVDRAKKRAIKDH---------I---TG------ 461 (512)
T ss_pred HHHHHHHHHHHhhhhcccceeEEEecCCceeeEeecccccHHHHHHHHHHHHHHHHHHH---------H---hc------
Confidence 44432 121 111 244 38888888887755555443 0 00
Q ss_pred ccCCcCCHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 019334 303 FTPPEKTVEALLESGYSLLREQQLIMETKLSKEY 336 (342)
Q Consensus 303 ~~~~~~~~~~l~~~g~~l~~eq~~v~~~~l~~~y 336 (342)
..+.+++++|+++=..=..|.+-+-++---+++
T Consensus 462 -~~~~~~~~~l~~a~~~e~~~~~~~~~~~~~~~w 494 (512)
T TIGR03689 462 -GQVGLRIEHLLAAVLDEFRESEDLPNTTNPDDW 494 (512)
T ss_pred -CCcCcCHHHHHHHHHHhhcccccCCCCCCHHHH
Confidence 124677888887655555555555554444444
No 22
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=4.3e-35 Score=291.48 Aligned_cols=208 Identities=17% Similarity=0.206 Sum_probs=163.7
Q ss_pred cccHHHHHHHHHHHHHHHHHh-------------hcCCCCCeEEEeecCCCCCHHHHHHHHHHHhCCceEEeeccccccc
Q 019334 47 YIAPVFMASLLCHIVKNYIAH-------------LLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESE 113 (342)
Q Consensus 47 y~~~~f~d~l~~hi~K~~l~~-------------~~~~k~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~ 113 (342)
.....|.|.++..-.|.++.+ ..|+.+|++++||||||||||++|+++|++++++|+.++++++.++
T Consensus 139 ~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~k 218 (398)
T PTZ00454 139 KPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQK 218 (398)
T ss_pred CCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHHH
Confidence 445678888888888877755 2478899999999999999999999999999999999999999999
Q ss_pred ccCCcHHHHHHHHHHHHHhhhhcCCceEEEeecccccCCCCC--CCcccchhHHHHHHHHhhcCCCCccccCccccccCC
Q 019334 114 RAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG--NTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDI 191 (342)
Q Consensus 114 ~~GEsEr~iR~~F~~A~e~~~~~~~PcILfIDEIDAg~~r~~--~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~ 191 (342)
|.|++++.+|++|..|.. .+||||||||||++++++. .++.+...+++..+|++.+|+ + ..
T Consensus 219 ~~ge~~~~lr~lf~~A~~-----~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~---------~---~~ 281 (398)
T PTZ00454 219 YLGEGPRMVRDVFRLARE-----NAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDG---------F---DQ 281 (398)
T ss_pred hcchhHHHHHHHHHHHHh-----cCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhc---------c---CC
Confidence 999999999999998864 5699999999999887553 222222335566677777774 1 11
Q ss_pred CCCccEEEeeCCCCCCccCCCCCCCCcceecC--CCHHHHHHHHHHHhhcCCCC----HHHHHHHhhcCCCCccchHHHH
Q 019334 192 TNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQ--PNLEDILNIVHRMYEKDGIT----KDEVGSIVKTFPNQALDFYGAL 265 (342)
Q Consensus 192 ~~~V~VIatTNr~~~LdpaLlRpGRfD~~i~v--P~~~~R~~Il~~~~~~~~~s----~~di~~lvd~f~~~~~df~gAl 265 (342)
..+|.||+|||+++.|||||+||||||+.|++ |+.++|.+||+.+++..+++ ..++.+.+++|+ +|.
T Consensus 282 ~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~s-------gaD 354 (398)
T PTZ00454 282 TTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKIS-------AAD 354 (398)
T ss_pred CCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHHHHcCCCC-------HHH
Confidence 45799999999999999999999999998875 99999999999999877654 344444444444 454
Q ss_pred HHHHHHHHHHHHH
Q 019334 266 RSRTYDRSISKWI 278 (342)
Q Consensus 266 rs~~~~e~ir~w~ 278 (342)
-..++.++....+
T Consensus 355 I~~l~~eA~~~A~ 367 (398)
T PTZ00454 355 IAAICQEAGMQAV 367 (398)
T ss_pred HHHHHHHHHHHHH
Confidence 4445555543333
No 23
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.1e-36 Score=290.94 Aligned_cols=192 Identities=16% Similarity=0.189 Sum_probs=159.4
Q ss_pred HHHHHHHHHHHHHHHHhh--c----------CCCCCeEEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccccccCCc
Q 019334 51 VFMASLLCHIVKNYIAHL--L----------NVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEP 118 (342)
Q Consensus 51 ~f~d~l~~hi~K~~l~~~--~----------~~k~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~~~GEs 118 (342)
.+-|+.++.-+|..|.+. + +.+|.+|+|||||||||||.||+|||.+.+-.|++||.++|+|+|.|||
T Consensus 131 kWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWmGES 210 (439)
T KOG0739|consen 131 KWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGES 210 (439)
T ss_pred chhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHhccH
Confidence 466788999999999872 1 2344489999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhcCCceEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEE
Q 019334 119 GKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPII 198 (342)
Q Consensus 119 Er~iR~~F~~A~e~~~~~~~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VI 198 (342)
||+++++|+.|++ ++|+||||||||+.|++++...+ ...|++...||-.|. |. +.+ ..+|.|+
T Consensus 211 EkLVknLFemARe-----~kPSIIFiDEiDslcg~r~enEs-easRRIKTEfLVQMq--------GV--G~d-~~gvLVL 273 (439)
T KOG0739|consen 211 EKLVKNLFEMARE-----NKPSIIFIDEIDSLCGSRSENES-EASRRIKTEFLVQMQ--------GV--GND-NDGVLVL 273 (439)
T ss_pred HHHHHHHHHHHHh-----cCCcEEEeehhhhhccCCCCCch-HHHHHHHHHHHHhhh--------cc--ccC-CCceEEE
Confidence 9999999999986 47999999999999987762222 235788888885554 42 223 5789999
Q ss_pred EeeCCCCCCccCCCCCCCCcceecC--CCHHHHHHHHHHHhhcCC--CCHHHHH---HHhhcCCCCccch
Q 019334 199 FTGNDFSTIYAPLIRDGRMEKFYWQ--PNLEDILNIVHRMYEKDG--ITKDEVG---SIVKTFPNQALDF 261 (342)
Q Consensus 199 atTNr~~~LdpaLlRpGRfD~~i~v--P~~~~R~~Il~~~~~~~~--~s~~di~---~lvd~f~~~~~df 261 (342)
+|||-|+.||.|++| |||+.||+ |+..+|..+|+.|+.+.+ ++..|+. +-+++|+|.+|-.
T Consensus 274 gATNiPw~LDsAIRR--RFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisi 341 (439)
T KOG0739|consen 274 GATNIPWVLDSAIRR--RFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISI 341 (439)
T ss_pred ecCCCchhHHHHHHH--HhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceEE
Confidence 999999999999999 99998886 899999999999998764 5665554 4457888877543
No 24
>CHL00206 ycf2 Ycf2; Provisional
Probab=100.00 E-value=7.5e-36 Score=333.15 Aligned_cols=170 Identities=14% Similarity=0.095 Sum_probs=134.5
Q ss_pred cCCCCCeEEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccccc----------cC----------------------
Q 019334 69 LNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESER----------AG---------------------- 116 (342)
Q Consensus 69 ~~~k~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~~----------~G---------------------- 116 (342)
+|+++|+|+||+||||||||++|||+|+++++|||.|+++++++++ +|
T Consensus 1625 LGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~~e~ 1704 (2281)
T CHL00206 1625 LALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTELLTM 1704 (2281)
T ss_pred cCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccchhhhhh
Confidence 5789999999999999999999999999999999999999999765 23
Q ss_pred ---------CcHHH--HHHHHHHHHHhhhhcCCceEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCcc
Q 019334 117 ---------EPGKL--IRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQD 185 (342)
Q Consensus 117 ---------EsEr~--iR~~F~~A~e~~~~~~~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~ 185 (342)
++++. ||++|+.|+++ +||||||||||+++.+ + . +....++|++.||+-
T Consensus 1705 ~n~~~~~m~~~e~~~rIr~lFelARk~-----SPCIIFIDEIDaL~~~-d--s----~~ltL~qLLneLDg~-------- 1764 (2281)
T CHL00206 1705 MNALTMDMMPKIDRFYITLQFELAKAM-----SPCIIWIPNIHDLNVN-E--S----NYLSLGLLVNSLSRD-------- 1764 (2281)
T ss_pred cchhhhhhhhhhhHHHHHHHHHHHHHC-----CCeEEEEEchhhcCCC-c--c----ceehHHHHHHHhccc--------
Confidence 33444 99999999754 5999999999999854 1 1 122367899988851
Q ss_pred ccccCCCCCccEEEeeCCCCCCccCCCCCCCCcceecC--CCHHHHHHHHHHHhhcC-------CCCHHHHHHHhhcCCC
Q 019334 186 WRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQ--PNLEDILNIVHRMYEKD-------GITKDEVGSIVKTFPN 256 (342)
Q Consensus 186 ~~~~~~~~~V~VIatTNr~~~LdpaLlRpGRfD~~i~v--P~~~~R~~Il~~~~~~~-------~~s~~di~~lvd~f~~ 256 (342)
.......+|.||||||||+.|||||+||||||+.|.+ |+..+|.+|+.++.... .++..++++.+.+|+|
T Consensus 1765 -~~~~s~~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSG 1843 (2281)
T CHL00206 1765 -CERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNA 1843 (2281)
T ss_pred -cccCCCCCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCH
Confidence 1112256899999999999999999999999999986 89999999988653322 2344566666666666
Q ss_pred Ccc
Q 019334 257 QAL 259 (342)
Q Consensus 257 ~~~ 259 (342)
+++
T Consensus 1844 ADL 1846 (2281)
T CHL00206 1844 RDL 1846 (2281)
T ss_pred HHH
Confidence 543
No 25
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=100.00 E-value=1.6e-34 Score=285.38 Aligned_cols=188 Identities=20% Similarity=0.242 Sum_probs=146.5
Q ss_pred hcCCCCCeEEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccccccCCcHHHHHHHHHHHHHhhhhcCCceEEEeecc
Q 019334 68 LLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDI 147 (342)
Q Consensus 68 ~~~~k~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~~~GEsEr~iR~~F~~A~e~~~~~~~PcILfIDEI 147 (342)
..|+.+|.+++||||||||||++|+++|++++.+|+.++++++.++|+|++++.+|++|..|.. .+|||||||||
T Consensus 159 ~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~-----~~p~IlfiDEi 233 (389)
T PRK03992 159 EVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQKFIGEGARLVRELFELARE-----KAPSIIFIDEI 233 (389)
T ss_pred hcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhHhhccchHHHHHHHHHHHHh-----cCCeEEEEech
Confidence 4578999999999999999999999999999999999999999999999999999999998864 46999999999
Q ss_pred cccCCCCCCC--cccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCCccCCCCCCCCcceecC--
Q 019334 148 DAGLGRFGNT--QMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQ-- 223 (342)
Q Consensus 148 DAg~~r~~~t--~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~~~LdpaLlRpGRfD~~i~v-- 223 (342)
|++++++++. ++....++...+|++.+|+ .....+|.||+|||+++.||++|+||||||+.+++
T Consensus 234 D~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~------------~~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~ 301 (389)
T PRK03992 234 DAIAAKRTDSGTSGDREVQRTLMQLLAEMDG------------FDPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPL 301 (389)
T ss_pred hhhhcccccCCCCccHHHHHHHHHHHHhccc------------cCCCCCEEEEEecCChhhCCHHHcCCccCceEEEECC
Confidence 9988766522 2222223344455555553 11145899999999999999999999999998875
Q ss_pred CCHHHHHHHHHHHhhcCCC----CHHHHHHHhhcCCCCccchHHHHHHHHHHHHHHHHHH
Q 019334 224 PNLEDILNIVHRMYEKDGI----TKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWID 279 (342)
Q Consensus 224 P~~~~R~~Il~~~~~~~~~----s~~di~~lvd~f~~~~~df~gAlrs~~~~e~ir~w~~ 279 (342)
|+.++|.+||+.+++...+ +..++...+++| .+|....++.++....++
T Consensus 302 P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g~-------sgadl~~l~~eA~~~a~~ 354 (389)
T PRK03992 302 PDEEGRLEILKIHTRKMNLADDVDLEELAELTEGA-------SGADLKAICTEAGMFAIR 354 (389)
T ss_pred CCHHHHHHHHHHHhccCCCCCcCCHHHHHHHcCCC-------CHHHHHHHHHHHHHHHHH
Confidence 9999999999999887654 344555544444 445444455555443333
No 26
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.8e-36 Score=303.62 Aligned_cols=180 Identities=23% Similarity=0.338 Sum_probs=156.4
Q ss_pred hcCCCCCeEEEeecCCCCCHHHHHHHHHHHhCC-ceEEeecccccccccCCcHHHHHHHHHHHHHhhhhcC---CceEEE
Q 019334 68 LLNVKVPLILGIWGGKGQGKSFQTELIFQAMGI-EPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQG---KMSCLM 143 (342)
Q Consensus 68 ~~~~k~PlglgL~GPPG~GKTllaravA~~~g~-~~i~vs~~eL~s~~~GEsEr~iR~~F~~A~e~~~~~~---~PcILf 143 (342)
.+|+++.+|++||||||||||++||.|.+-+++ ++-.|+++|+++||+||||++||.+|..|.+--++.| .-.||+
T Consensus 250 ~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeIL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIII 329 (744)
T KOG0741|consen 250 QLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIII 329 (744)
T ss_pred HcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHHHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEE
Confidence 456899999999999999999999999999998 7888999999999999999999999999987766444 367999
Q ss_pred eecccccCCCCCCC--cccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCCccCCCCCCCCccee
Q 019334 144 INDIDAGLGRFGNT--QMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFY 221 (342)
Q Consensus 144 IDEIDAg~~r~~~t--~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~~~LdpaLlRpGRfD~~i 221 (342)
||||||+|.+||++ +.+|+++ |+.+||+-||| .++.+++.||+.|||.|.||.||+|||||+..+
T Consensus 330 FDEiDAICKqRGS~~g~TGVhD~-VVNQLLsKmDG------------VeqLNNILVIGMTNR~DlIDEALLRPGRlEVqm 396 (744)
T KOG0741|consen 330 FDEIDAICKQRGSMAGSTGVHDT-VVNQLLSKMDG------------VEQLNNILVIGMTNRKDLIDEALLRPGRLEVQM 396 (744)
T ss_pred ehhhHHHHHhcCCCCCCCCccHH-HHHHHHHhccc------------HHhhhcEEEEeccCchhhHHHHhcCCCceEEEE
Confidence 99999999988832 3457777 55689988886 233789999999999999999999999999866
Q ss_pred c--CCCHHHHHHHHHHHhhcC--------CCCHHHHHHHhhcCCCCccc
Q 019334 222 W--QPNLEDILNIVHRMYEKD--------GITKDEVGSIVKTFPNQALD 260 (342)
Q Consensus 222 ~--vP~~~~R~~Il~~~~~~~--------~~s~~di~~lvd~f~~~~~d 260 (342)
. +||++.|++||++|++.+ +++.+||+.++..|+|+.+.
T Consensus 397 EIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEle 445 (744)
T KOG0741|consen 397 EISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELE 445 (744)
T ss_pred EEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHH
Confidence 5 599999999999998843 57789999999999888753
No 27
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=100.00 E-value=3.5e-34 Score=289.78 Aligned_cols=189 Identities=15% Similarity=0.212 Sum_probs=150.9
Q ss_pred cccHHHHHHHHHHHHHHHHHh------------hcCCCCCeEEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccccc
Q 019334 47 YIAPVFMASLLCHIVKNYIAH------------LLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESER 114 (342)
Q Consensus 47 y~~~~f~d~l~~hi~K~~l~~------------~~~~k~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~~ 114 (342)
....+|-|..+..-+|..+.+ ..+.++|++++||||||||||++|+++|++++++++.++++++.+.|
T Consensus 49 ~~~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~ 128 (495)
T TIGR01241 49 KPKVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMF 128 (495)
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHHH
Confidence 345567777666666655433 24678999999999999999999999999999999999999999999
Q ss_pred cCCcHHHHHHHHHHHHHhhhhcCCceEEEeecccccCCCCCC-Ccc-cchhHHHHHHHHhhcCCCCccccCccccccCCC
Q 019334 115 AGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGN-TQM-TVNNQIVVGTLMNLSDNPTRVSIGQDWRESDIT 192 (342)
Q Consensus 115 ~GEsEr~iR~~F~~A~e~~~~~~~PcILfIDEIDAg~~r~~~-t~~-~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~ 192 (342)
.|++++.+|++|+.|.. .+||||||||||+++++++. .++ ....+.+..+|++.||+ + ...
T Consensus 129 ~g~~~~~l~~~f~~a~~-----~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~---------~---~~~ 191 (495)
T TIGR01241 129 VGVGASRVRDLFEQAKK-----NAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDG---------F---GTN 191 (495)
T ss_pred hcccHHHHHHHHHHHHh-----cCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhcc---------c---cCC
Confidence 99999999999999864 46999999999999876652 211 22223456678888884 1 114
Q ss_pred CCccEEEeeCCCCCCccCCCCCCCCcceecC--CCHHHHHHHHHHHhhcCCCC-HHHHHHHhh
Q 019334 193 NRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQ--PNLEDILNIVHRMYEKDGIT-KDEVGSIVK 252 (342)
Q Consensus 193 ~~V~VIatTNr~~~LdpaLlRpGRfD~~i~v--P~~~~R~~Il~~~~~~~~~s-~~di~~lvd 252 (342)
.+|.||+|||+|+.|||+|+||||||+.+.+ |+.++|.+||+.+++...+. ..++..++.
T Consensus 192 ~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la~ 254 (495)
T TIGR01241 192 TGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVAR 254 (495)
T ss_pred CCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHH
Confidence 5799999999999999999999999998875 99999999999998876542 344444443
No 28
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-35 Score=290.19 Aligned_cols=200 Identities=22% Similarity=0.319 Sum_probs=168.2
Q ss_pred hcccccccHHHHHHHHHHHHHHHHHhh---c-----------CCCCCeEEEeecCCCCCHHHHHHHHHHHhCCceEEeec
Q 019334 42 LQGDYYIAPVFMASLLCHIVKNYIAHL---L-----------NVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSA 107 (342)
Q Consensus 42 ~~~~~y~~~~f~d~l~~hi~K~~l~~~---~-----------~~k~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~ 107 (342)
.+-.-+|.-+|.|.+++.-+|..+.++ | -.++|+|+|||||||||||++|+|+|++.|++||.|++
T Consensus 81 ~v~p~~I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~ 160 (386)
T KOG0737|consen 81 VVPPSEIGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSV 160 (386)
T ss_pred ccchhhceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeec
Confidence 334455566788999999999999872 1 24789999999999999999999999999999999999
Q ss_pred ccccccccCCcHHHHHHHHHHHHHhhhhcCCceEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCcccc
Q 019334 108 GELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWR 187 (342)
Q Consensus 108 ~eL~s~~~GEsEr~iR~~F~~A~e~~~~~~~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~ 187 (342)
+.|.+||.||++|+++.+|-.|... +||||||||||+.++.|..+. ....+++.+++|.+.|| .+
T Consensus 161 s~lt~KWfgE~eKlv~AvFslAsKl-----~P~iIFIDEvds~L~~R~s~d-HEa~a~mK~eFM~~WDG---------l~ 225 (386)
T KOG0737|consen 161 SNLTSKWFGEAQKLVKAVFSLASKL-----QPSIIFIDEVDSFLGQRRSTD-HEATAMMKNEFMALWDG---------LS 225 (386)
T ss_pred cccchhhHHHHHHHHHHHHhhhhhc-----CcceeehhhHHHHHhhcccch-HHHHHHHHHHHHHHhcc---------cc
Confidence 9999999999999999999999754 599999999999887664332 33457888999998775 12
Q ss_pred ccCCCCCccEEEeeCCCCCCccCCCCCCCCcceec--CCCHHHHHHHHHHHhhcCC----CCHHHHHHHhhcCCCCcc
Q 019334 188 ESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYW--QPNLEDILNIVHRMYEKDG----ITKDEVGSIVKTFPNQAL 259 (342)
Q Consensus 188 ~~~~~~~V~VIatTNr~~~LdpaLlRpGRfD~~i~--vP~~~~R~~Il~~~~~~~~----~s~~di~~lvd~f~~~~~ 259 (342)
..+ ..+|.|++|||||.+||.|.+| ||-+.+. +|+.++|..||+.+++.+. ++..++++.+++|+|.++
T Consensus 226 s~~-~~rVlVlgATNRP~DlDeAiiR--R~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~GySGSDL 300 (386)
T KOG0737|consen 226 SKD-SERVLVLGATNRPFDLDEAIIR--RLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMTEGYSGSDL 300 (386)
T ss_pred CCC-CceEEEEeCCCCCccHHHHHHH--hCcceeeeCCCchhhHHHHHHHHhcccccCcccCHHHHHHhcCCCcHHHH
Confidence 222 4579999999999999999999 9999766 4999999999999999775 566888888899998765
No 29
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.8e-34 Score=295.91 Aligned_cols=187 Identities=20% Similarity=0.252 Sum_probs=159.2
Q ss_pred hcCCCCCeEEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccccccCCcHHHHHHHHHHHHHhhhhcCC-ceEEEeec
Q 019334 68 LLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGK-MSCLMIND 146 (342)
Q Consensus 68 ~~~~k~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~~~GEsEr~iR~~F~~A~e~~~~~~~-PcILfIDE 146 (342)
..++++|+++++|||||||||++++|||++.++.++.++++||++++.||+|+++|++|++|.. .+ |+||||||
T Consensus 212 s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~~gEte~~LR~~f~~a~k-----~~~psii~IdE 286 (693)
T KOG0730|consen 212 SIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKFPGETESNLRKAFAEALK-----FQVPSIIFIDE 286 (693)
T ss_pred hcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhcccchHHHHHHHHHHHhc-----cCCCeeEeHHh
Confidence 3689999999999999999999999999999999999999999999999999999999999974 45 99999999
Q ss_pred ccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCCccCCCCCCCCcceec--CC
Q 019334 147 IDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYW--QP 224 (342)
Q Consensus 147 IDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~~~LdpaLlRpGRfD~~i~--vP 224 (342)
||+++|++.++.. ..+++.++|+++||+ +. ...+|.||+|||||++|||+|+| ||||+.+. +|
T Consensus 287 ld~l~p~r~~~~~--~e~Rv~sqlltL~dg----------~~--~~~~vivl~atnrp~sld~alRR-gRfd~ev~IgiP 351 (693)
T KOG0730|consen 287 LDALCPKREGADD--VESRVVSQLLTLLDG----------LK--PDAKVIVLAATNRPDSLDPALRR-GRFDREVEIGIP 351 (693)
T ss_pred HhhhCCcccccch--HHHHHHHHHHHHHhh----------Cc--CcCcEEEEEecCCccccChhhhc-CCCcceeeecCC
Confidence 9999999886554 356799999999995 22 14689999999999999999999 99999776 59
Q ss_pred CHHHHHHHHHHHhhcCCCC-HHHHHHHhhcCCCCccchHHHHHHHHHHHHHHHHH
Q 019334 225 NLEDILNIVHRMYEKDGIT-KDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWI 278 (342)
Q Consensus 225 ~~~~R~~Il~~~~~~~~~s-~~di~~lvd~f~~~~~df~gAlrs~~~~e~ir~w~ 278 (342)
+..+|++|++.+++..+.. .++++.+..... .|-||..+.++.++..+.+
T Consensus 352 ~~~~RldIl~~l~k~~~~~~~~~l~~iA~~th----GyvGaDL~~l~~ea~~~~~ 402 (693)
T KOG0730|consen 352 GSDGRLDILRVLTKKMNLLSDVDLEDIAVSTH----GYVGADLAALCREASLQAT 402 (693)
T ss_pred CchhHHHHHHHHHHhcCCcchhhHHHHHHHcc----chhHHHHHHHHHHHHHHHh
Confidence 9999999999999999865 677777764332 3446666666666543333
No 30
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=100.00 E-value=9.8e-34 Score=285.07 Aligned_cols=195 Identities=19% Similarity=0.191 Sum_probs=153.9
Q ss_pred cccHHHHHHHHHHHHHHHHHh-------------hcCCCCCeEEEeecCCCCCHHHHHHHHHHHhCCceEEeeccccccc
Q 019334 47 YIAPVFMASLLCHIVKNYIAH-------------LLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESE 113 (342)
Q Consensus 47 y~~~~f~d~l~~hi~K~~l~~-------------~~~~k~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~ 113 (342)
+.+..|.|.+++.-.+..+.+ ..++.+|.+++||||||||||++|+++|++++.+|+.+++++|+++
T Consensus 177 ~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~k 256 (438)
T PTZ00361 177 APLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQK 256 (438)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhhh
Confidence 344678888776666555543 2478899999999999999999999999999999999999999999
Q ss_pred ccCCcHHHHHHHHHHHHHhhhhcCCceEEEeecccccCCCCC--CCcccchhHHHHHHHHhhcCCCCccccCccccccCC
Q 019334 114 RAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG--NTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDI 191 (342)
Q Consensus 114 ~~GEsEr~iR~~F~~A~e~~~~~~~PcILfIDEIDAg~~r~~--~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~ 191 (342)
|.|++++.+|+.|+.|.. ++||||||||||+++.++. .++++...+++...|++.+|+ + ..
T Consensus 257 ~~Ge~~~~vr~lF~~A~~-----~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg---------~---~~ 319 (438)
T PTZ00361 257 YLGDGPKLVRELFRVAEE-----NAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDG---------F---DS 319 (438)
T ss_pred hcchHHHHHHHHHHHHHh-----CCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhh---------h---cc
Confidence 999999999999998864 5699999999999887654 222222224444566666663 1 11
Q ss_pred CCCccEEEeeCCCCCCccCCCCCCCCcceecC--CCHHHHHHHHHHHhhcCCCC----HHHHHHHhhcCCCCc
Q 019334 192 TNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQ--PNLEDILNIVHRMYEKDGIT----KDEVGSIVKTFPNQA 258 (342)
Q Consensus 192 ~~~V~VIatTNr~~~LdpaLlRpGRfD~~i~v--P~~~~R~~Il~~~~~~~~~s----~~di~~lvd~f~~~~ 258 (342)
..+|.||+|||+++.|||+|+||||||+.|.+ ||.++|.+||+.++....++ .+++....++|+|++
T Consensus 320 ~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~sgAd 392 (438)
T PTZ00361 320 RGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGAD 392 (438)
T ss_pred cCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCCHHH
Confidence 45799999999999999999999999998875 99999999999998877553 345555445555443
No 31
>CHL00176 ftsH cell division protein; Validated
Probab=100.00 E-value=4.1e-32 Score=283.91 Aligned_cols=187 Identities=18% Similarity=0.227 Sum_probs=152.5
Q ss_pred cHHHHHHHHHHHHHHHHHhh------------cCCCCCeEEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccccccC
Q 019334 49 APVFMASLLCHIVKNYIAHL------------LNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAG 116 (342)
Q Consensus 49 ~~~f~d~l~~hi~K~~l~~~------------~~~k~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~~~G 116 (342)
...|-|+.+..-.|..+.+. .+.++|.+++||||||||||++|+++|++++++++.++++++.+.+.|
T Consensus 179 ~~~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~~g 258 (638)
T CHL00176 179 GITFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMFVG 258 (638)
T ss_pred CCCHHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHhhh
Confidence 35678888777777776552 367889999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHhhhhcCCceEEEeecccccCCCCC-CCcc-cchhHHHHHHHHhhcCCCCccccCccccccCCCCC
Q 019334 117 EPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQM-TVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNR 194 (342)
Q Consensus 117 EsEr~iR~~F~~A~e~~~~~~~PcILfIDEIDAg~~r~~-~t~~-~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~ 194 (342)
.+.+.+|+.|+.|. .++||||||||||+++.+++ +.++ ....+.+..+|++.+|+ + ....+
T Consensus 259 ~~~~~vr~lF~~A~-----~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg---------~---~~~~~ 321 (638)
T CHL00176 259 VGAARVRDLFKKAK-----ENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDG---------F---KGNKG 321 (638)
T ss_pred hhHHHHHHHHHHHh-----cCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhcc---------c---cCCCC
Confidence 99999999999886 45799999999999887665 2222 12224456678877774 1 11468
Q ss_pred ccEEEeeCCCCCCccCCCCCCCCcceecC--CCHHHHHHHHHHHhhcCCCC-HHHHHHHhh
Q 019334 195 IPIIFTGNDFSTIYAPLIRDGRMEKFYWQ--PNLEDILNIVHRMYEKDGIT-KDEVGSIVK 252 (342)
Q Consensus 195 V~VIatTNr~~~LdpaLlRpGRfD~~i~v--P~~~~R~~Il~~~~~~~~~s-~~di~~lvd 252 (342)
|.||+|||+++.|||+|+||||||+.+.+ |+.++|.+||+.+++...+. ..++..++.
T Consensus 322 ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~d~~l~~lA~ 382 (638)
T CHL00176 322 VIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSPDVSLELIAR 382 (638)
T ss_pred eeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccchhHHHHHHHh
Confidence 99999999999999999999999998764 99999999999999876543 455566554
No 32
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.98 E-value=7.1e-32 Score=262.67 Aligned_cols=187 Identities=20% Similarity=0.252 Sum_probs=145.6
Q ss_pred hcCCCCCeEEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccccccCCcHHHHHHHHHHHHHhhhhcCCceEEEeecc
Q 019334 68 LLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDI 147 (342)
Q Consensus 68 ~~~~k~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~~~GEsEr~iR~~F~~A~e~~~~~~~PcILfIDEI 147 (342)
..|+.+|.+++||||||||||++|+++|++++.+++.++++++.++|.|++++.+++.|+.|.. .+|||||||||
T Consensus 150 ~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~-----~~p~il~iDEi 224 (364)
T TIGR01242 150 EVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVRKYIGEGARLVREIFELAKE-----KAPSIIFIDEI 224 (364)
T ss_pred hcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHHHhhhHHHHHHHHHHHHHHh-----cCCcEEEhhhh
Confidence 3578899999999999999999999999999999999999999999999999999999988863 46999999999
Q ss_pred cccCCCCC--CCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCCccCCCCCCCCcceecC--
Q 019334 148 DAGLGRFG--NTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQ-- 223 (342)
Q Consensus 148 DAg~~r~~--~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~~~LdpaLlRpGRfD~~i~v-- 223 (342)
|+++.++. .++.+...+....+|++.+|+ + +...+|.||+|||+++.|||+|+||||||+++++
T Consensus 225 D~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~---------~---~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~ 292 (364)
T TIGR01242 225 DAIAAKRTDSGTSGDREVQRTLMQLLAELDG---------F---DPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPL 292 (364)
T ss_pred hhhccccccCCCCccHHHHHHHHHHHHHhhC---------C---CCCCCEEEEEecCChhhCChhhcCcccCceEEEeCC
Confidence 99876554 222222223344455555553 1 1146899999999999999999999999998875
Q ss_pred CCHHHHHHHHHHHhhcCCC----CHHHHHHHhhcCCCCccchHHHHHHHHHHHHHHHHH
Q 019334 224 PNLEDILNIVHRMYEKDGI----TKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWI 278 (342)
Q Consensus 224 P~~~~R~~Il~~~~~~~~~----s~~di~~lvd~f~~~~~df~gAlrs~~~~e~ir~w~ 278 (342)
|+.++|.+||+.++....+ +..++.+++++|+ +|....++.++....+
T Consensus 293 P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~t~g~s-------g~dl~~l~~~A~~~a~ 344 (364)
T TIGR01242 293 PDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGAS-------GADLKAICTEAGMFAI 344 (364)
T ss_pred cCHHHHHHHHHHHHhcCCCCccCCHHHHHHHcCCCC-------HHHHHHHHHHHHHHHH
Confidence 9999999999998876653 4556666655554 4444444555543333
No 33
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.98 E-value=2e-32 Score=260.92 Aligned_cols=189 Identities=18% Similarity=0.174 Sum_probs=155.2
Q ss_pred HHHHHHHHHHHHHHHHHh---------hcCCCCCeEEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccccccCCcHH
Q 019334 50 PVFMASLLCHIVKNYIAH---------LLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGK 120 (342)
Q Consensus 50 ~~f~d~l~~hi~K~~l~~---------~~~~k~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~~~GEsEr 120 (342)
-.|-|+++...+|..+.- .++-=.|+-||+|||||||||++|||+|++..+|++.|.+.+|+.+++|+..+
T Consensus 118 it~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGehVGdgar 197 (368)
T COG1223 118 ITLDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHVGDGAR 197 (368)
T ss_pred ccHhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHHhhhHHH
Confidence 346777888877776642 34545689999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhcCCceEEEeecccccCCCCC--CCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEE
Q 019334 121 LIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG--NTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPII 198 (342)
Q Consensus 121 ~iR~~F~~A~e~~~~~~~PcILfIDEIDAg~~r~~--~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VI 198 (342)
.||++|.+|+++ +|||+||||+||++-.|. .-.++| +..| ..||+.||+. ..+.+|.-|
T Consensus 198 ~Ihely~rA~~~-----aPcivFiDE~DAiaLdRryQelRGDV-sEiV-NALLTelDgi------------~eneGVvtI 258 (368)
T COG1223 198 RIHELYERARKA-----APCIVFIDELDAIALDRRYQELRGDV-SEIV-NALLTELDGI------------KENEGVVTI 258 (368)
T ss_pred HHHHHHHHHHhc-----CCeEEEehhhhhhhhhhhHHHhcccH-HHHH-HHHHHhccCc------------ccCCceEEE
Confidence 999999999865 499999999999764333 333455 3444 4677778852 115689999
Q ss_pred EeeCCCCCCccCCCCCCCCcceec--CCCHHHHHHHHHHHhhcCCC----CHHHHHHHhhcCCCCcc
Q 019334 199 FTGNDFSTIYAPLIRDGRMEKFYW--QPNLEDILNIVHRMYEKDGI----TKDEVGSIVKTFPNQAL 259 (342)
Q Consensus 199 atTNr~~~LdpaLlRpGRfD~~i~--vP~~~~R~~Il~~~~~~~~~----s~~di~~lvd~f~~~~~ 259 (342)
+|||+|+.||||.+- ||+.+|. +|+.++|.+|++.+.++.++ ....+.+.+.+|+|++|
T Consensus 259 aaTN~p~~LD~aiRs--RFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~SgRdi 323 (368)
T COG1223 259 AATNRPELLDPAIRS--RFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDI 323 (368)
T ss_pred eecCChhhcCHHHHh--hhhheeeeeCCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCCCchhH
Confidence 999999999999877 9999775 59999999999999998865 34666777778999875
No 34
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=5.6e-32 Score=291.61 Aligned_cols=192 Identities=19% Similarity=0.242 Sum_probs=156.4
Q ss_pred HHHHHHHHHHHHHHHh-------------hcCCCCCeEEEeecCCCCCHHHHHHHHHHHhC-----CceEEeeccccccc
Q 019334 52 FMASLLCHIVKNYIAH-------------LLNVKVPLILGIWGGKGQGKSFQTELIFQAMG-----IEPVIMSAGELESE 113 (342)
Q Consensus 52 f~d~l~~hi~K~~l~~-------------~~~~k~PlglgL~GPPG~GKTllaravA~~~g-----~~~i~vs~~eL~s~ 113 (342)
|-+++++....|.|.+ -+++.+|+|+++|||||+|||+.|+|+|..+. +.|..-++++++|+
T Consensus 264 fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD~lsk 343 (1080)
T KOG0732|consen 264 FDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGADCLSK 343 (1080)
T ss_pred ccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCchhhcc
Confidence 5566666666666655 35799999999999999999999999998874 68999999999999
Q ss_pred ccCCcHHHHHHHHHHHHHhhhhcCCceEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCC
Q 019334 114 RAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITN 193 (342)
Q Consensus 114 ~~GEsEr~iR~~F~~A~e~~~~~~~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~ 193 (342)
|+||.||.+|.+|++|+ +.+|+|||+||||-.++-+..-|...+.+ |+.|||.+||| .+...
T Consensus 344 wvgEaERqlrllFeeA~-----k~qPSIIffdeIdGlapvrSskqEqih~S-IvSTLLaLmdG------------ldsRg 405 (1080)
T KOG0732|consen 344 WVGEAERQLRLLFEEAQ-----KTQPSIIFFDEIDGLAPVRSSKQEQIHAS-IVSTLLALMDG------------LDSRG 405 (1080)
T ss_pred ccCcHHHHHHHHHHHHh-----ccCceEEeccccccccccccchHHHhhhh-HHHHHHHhccC------------CCCCC
Confidence 99999999999999997 46799999999999999775333223334 77899999996 23367
Q ss_pred CccEEEeeCCCCCCccCCCCCCCCcceec--CCCHHHHHHHHHHHhhcCC--CCHH---HHHHHhhcCCCCccch
Q 019334 194 RIPIIFTGNDFSTIYAPLIRDGRMEKFYW--QPNLEDILNIVHRMYEKDG--ITKD---EVGSIVKTFPNQALDF 261 (342)
Q Consensus 194 ~V~VIatTNr~~~LdpaLlRpGRfD~~i~--vP~~~~R~~Il~~~~~~~~--~s~~---di~~lvd~f~~~~~df 261 (342)
+|.||+|||||+++||||+||||||+++| +|+.++|..|+.+++++.. ++.. .+++...+|.|+++-+
T Consensus 406 qVvvigATnRpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlka 480 (1080)
T KOG0732|consen 406 QVVVIGATNRPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKA 480 (1080)
T ss_pred ceEEEcccCCccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHH
Confidence 89999999999999999999999999877 4999999999999988653 5554 3344444555555433
No 35
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.97 E-value=2.2e-31 Score=278.34 Aligned_cols=209 Identities=17% Similarity=0.196 Sum_probs=160.4
Q ss_pred HHHHHHHHHHHHHHHHHh------------hcCCCCCeEEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccccccCC
Q 019334 50 PVFMASLLCHIVKNYIAH------------LLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGE 117 (342)
Q Consensus 50 ~~f~d~l~~hi~K~~l~~------------~~~~k~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~~~GE 117 (342)
..|.|..+....+..+.+ ..+.+.|.+++|+||||||||++|+++|++++++|+.++++++.+.+.|+
T Consensus 149 ~~~~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~~g~ 228 (644)
T PRK10733 149 TTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGV 228 (644)
T ss_pred CcHHHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhhhcc
Confidence 345566666666655544 23557899999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHhhhhcCCceEEEeecccccCCCCC-CCc-ccchhHHHHHHHHhhcCCCCccccCccccccCCCCCc
Q 019334 118 PGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQ-MTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRI 195 (342)
Q Consensus 118 sEr~iR~~F~~A~e~~~~~~~PcILfIDEIDAg~~r~~-~t~-~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V 195 (342)
+++.+|+.|..|.+ .+||||||||||+++.+++ +.+ +......+..+||+.||+ +. ...+|
T Consensus 229 ~~~~~~~~f~~a~~-----~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg---------~~---~~~~v 291 (644)
T PRK10733 229 GASRVRDMFEQAKK-----AAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDG---------FE---GNEGI 291 (644)
T ss_pred cHHHHHHHHHHHHh-----cCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhc---------cc---CCCCe
Confidence 99999999998863 4699999999999887665 222 222223455677777774 21 14689
Q ss_pred cEEEeeCCCCCCccCCCCCCCCcceecC--CCHHHHHHHHHHHhhcCCCC-HHHHHHHhhcCCCCccchHHHHHHHHHHH
Q 019334 196 PIIFTGNDFSTIYAPLIRDGRMEKFYWQ--PNLEDILNIVHRMYEKDGIT-KDEVGSIVKTFPNQALDFYGALRSRTYDR 272 (342)
Q Consensus 196 ~VIatTNr~~~LdpaLlRpGRfD~~i~v--P~~~~R~~Il~~~~~~~~~s-~~di~~lvd~f~~~~~df~gAlrs~~~~e 272 (342)
.||+|||+|+.|||||+||||||+.+.+ |+.++|.+||+.+++..++. ..++..++.. ...|.+|....++.+
T Consensus 292 ivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~~~la~~----t~G~sgadl~~l~~e 367 (644)
T PRK10733 292 IVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARG----TPGFSGADLANLVNE 367 (644)
T ss_pred eEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCCHHHHHhh----CCCCCHHHHHHHHHH
Confidence 9999999999999999999999998875 99999999999999877653 3444444432 234456666666666
Q ss_pred HHHHHHH
Q 019334 273 SISKWID 279 (342)
Q Consensus 273 ~ir~w~~ 279 (342)
+....++
T Consensus 368 Aa~~a~r 374 (644)
T PRK10733 368 AALFAAR 374 (644)
T ss_pred HHHHHHH
Confidence 6554443
No 36
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.96 E-value=4e-29 Score=263.80 Aligned_cols=172 Identities=21% Similarity=0.285 Sum_probs=143.5
Q ss_pred hcCCCCCeEEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccccccCCcHHHHHHHHHHHHHhhhhcCCceEEEeecc
Q 019334 68 LLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDI 147 (342)
Q Consensus 68 ~~~~k~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~~~GEsEr~iR~~F~~A~e~~~~~~~PcILfIDEI 147 (342)
..++.+|.+++||||||||||++|+++|++++.+++.++++++.+++.|++++.++++|+.|.. .+|||||||||
T Consensus 206 ~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~~~g~~~~~l~~lf~~a~~-----~~p~il~iDEi 280 (733)
T TIGR01243 206 HLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSKYYGESEERLREIFKEAEE-----NAPSIIFIDEI 280 (733)
T ss_pred hcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhcccccHHHHHHHHHHHHHHh-----cCCcEEEeehh
Confidence 3578899999999999999999999999999999999999999999999999999999998864 46999999999
Q ss_pred cccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCCccCCCCCCCCcceecC--CC
Q 019334 148 DAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQ--PN 225 (342)
Q Consensus 148 DAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~~~LdpaLlRpGRfD~~i~v--P~ 225 (342)
|++++.++...+.. .+++..+|++++|+ . ....+|.||+|||+++.|||+|+|+||||+.+.+ |+
T Consensus 281 d~l~~~r~~~~~~~-~~~~~~~Ll~~ld~---------l---~~~~~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~ 347 (733)
T TIGR01243 281 DAIAPKREEVTGEV-EKRVVAQLLTLMDG---------L---KGRGRVIVIGATNRPDALDPALRRPGRFDREIVIRVPD 347 (733)
T ss_pred hhhcccccCCcchH-HHHHHHHHHHHhhc---------c---ccCCCEEEEeecCChhhcCHHHhCchhccEEEEeCCcC
Confidence 99998776433333 35677899999884 1 1145789999999999999999999999997764 99
Q ss_pred HHHHHHHHHHHhhcCCCC----HHHHHHHhhcCCCC
Q 019334 226 LEDILNIVHRMYEKDGIT----KDEVGSIVKTFPNQ 257 (342)
Q Consensus 226 ~~~R~~Il~~~~~~~~~s----~~di~~lvd~f~~~ 257 (342)
.++|.+||+.+.+...+. ...+.+.+.+|.++
T Consensus 348 ~~~R~~Il~~~~~~~~l~~d~~l~~la~~t~G~~ga 383 (733)
T TIGR01243 348 KRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVGA 383 (733)
T ss_pred HHHHHHHHHHHhcCCCCccccCHHHHHHhCCCCCHH
Confidence 999999999888776553 34455555555444
No 37
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=5.8e-30 Score=256.47 Aligned_cols=191 Identities=18% Similarity=0.220 Sum_probs=150.7
Q ss_pred HHHHHHHHHHHHHHHHhh-----------cCC-CCCeEEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccccccCCc
Q 019334 51 VFMASLLCHIVKNYIAHL-----------LNV-KVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEP 118 (342)
Q Consensus 51 ~f~d~l~~hi~K~~l~~~-----------~~~-k~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~~~GEs 118 (342)
.|-|..+++-+|+.+.+. .++ .+++++||+||||+|||++|+|||.|+++.|+.+|+++|.++|+||+
T Consensus 151 ~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLtsK~~Ge~ 230 (428)
T KOG0740|consen 151 GWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLREPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLTSKYVGES 230 (428)
T ss_pred cccCCcchhhHHHHhhhhhhhcccchHhhhccccccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhhhhccChH
Confidence 344556777777777651 233 45589999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhcCCceEEEeecccccCCCCC-CCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccE
Q 019334 119 GKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPI 197 (342)
Q Consensus 119 Er~iR~~F~~A~e~~~~~~~PcILfIDEIDAg~~r~~-~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~V 197 (342)
|++||.+|.-|+ ..+|+||||||||..+..+. +.. . .+++...+++...|+- - .....+|.|
T Consensus 231 eK~vralf~vAr-----~~qPsvifidEidslls~Rs~~e~-e-~srr~ktefLiq~~~~--------~--s~~~drvlv 293 (428)
T KOG0740|consen 231 EKLVRALFKVAR-----SLQPSVIFIDEIDSLLSKRSDNEH-E-SSRRLKTEFLLQFDGK--------N--SAPDDRVLV 293 (428)
T ss_pred HHHHHHHHHHHH-----hcCCeEEEechhHHHHhhcCCccc-c-cchhhhhHHHhhhccc--------c--CCCCCeEEE
Confidence 999999998886 46799999999999886554 332 2 2456666666554531 1 111459999
Q ss_pred EEeeCCCCCCccCCCCCCCCcceecC--CCHHHHHHHHHHHhhcCC--CCHHHHHH---HhhcCCCCccc
Q 019334 198 IFTGNDFSTIYAPLIRDGRMEKFYWQ--PNLEDILNIVHRMYEKDG--ITKDEVGS---IVKTFPNQALD 260 (342)
Q Consensus 198 IatTNr~~~LdpaLlRpGRfD~~i~v--P~~~~R~~Il~~~~~~~~--~s~~di~~---lvd~f~~~~~d 260 (342)
|+|||+|+.+|.|++| ||=+.+|+ |+.+.|..|+..+++..+ ++..|++. ++++|+|.+++
T Consensus 294 igaTN~P~e~Dea~~R--rf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~ 361 (428)
T KOG0740|consen 294 IGATNRPWELDEAARR--RFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDIT 361 (428)
T ss_pred EecCCCchHHHHHHHH--HhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHH
Confidence 9999999999999999 99998886 899999999998888763 55555554 45688776654
No 38
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.95 E-value=1.1e-28 Score=201.10 Aligned_cols=131 Identities=27% Similarity=0.379 Sum_probs=112.8
Q ss_pred EEeecCCCCCHHHHHHHHHHHhCCceEEeecccccccccCCcHHHHHHHHHHHHHhhhhcCCceEEEeecccccCCCCCC
Q 019334 77 LGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGN 156 (342)
Q Consensus 77 lgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~~~GEsEr~iR~~F~~A~e~~~~~~~PcILfIDEIDAg~~r~~~ 156 (342)
|+||||||||||++|+++|+.++.+++.++++++.+.+.+++++.+++.|.+|.+. ++||||||||+|+.++...
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~----~~~~vl~iDe~d~l~~~~~- 75 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKS----AKPCVLFIDEIDKLFPKSQ- 75 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHT----STSEEEEEETGGGTSHHCS-
T ss_pred CEEECcCCCCeeHHHHHHHhhccccccccccccccccccccccccccccccccccc----ccceeeeeccchhcccccc-
Confidence 68999999999999999999999999999999999999999999999999998643 2499999999999987653
Q ss_pred CcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCCccCCCCCCCCcceecCC
Q 019334 157 TQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQP 224 (342)
Q Consensus 157 t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~~~LdpaLlRpGRfD~~i~vP 224 (342)
.+.....+.+..+|++.+++. .+...++.||+|||+++.|||+|+| ||||+.+++|
T Consensus 76 ~~~~~~~~~~~~~L~~~l~~~-----------~~~~~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~ 131 (132)
T PF00004_consen 76 PSSSSFEQRLLNQLLSLLDNP-----------SSKNSRVIVIATTNSPDKIDPALLR-SRFDRRIEFP 131 (132)
T ss_dssp TSSSHHHHHHHHHHHHHHHTT-----------TTTSSSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-
T ss_pred cccccccccccceeeeccccc-----------ccccccceeEEeeCChhhCCHhHHh-CCCcEEEEcC
Confidence 233344567888999998852 1114679999999999999999999 9999999876
No 39
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=3.8e-22 Score=194.85 Aligned_cols=274 Identities=19% Similarity=0.269 Sum_probs=178.9
Q ss_pred CcchhHHHHHHHHhhhhhhhhcccccccHHHHHHHHHHHHHHHHHhhcC-----CCCCeEEEeecCCCCCHHHHHHHHHH
Q 019334 22 GKDSDIVFDYRQKVTRSFEYLQGDYYIAPVFMASLLCHIVKNYIAHLLN-----VKVPLILGIWGGKGQGKSFQTELIFQ 96 (342)
Q Consensus 22 g~~~~~~~~~~~~~~r~f~~~~~~~y~~~~f~d~l~~hi~K~~l~~~~~-----~k~PlglgL~GPPG~GKTllaravA~ 96 (342)
|+++=|+..+-+--...|.-.-+..|-.....+++..+.+--.+.-.-+ +..-+.++||||||||||++|||+|.
T Consensus 120 ~~esii~an~w~LPa~eF~glWEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQ 199 (423)
T KOG0744|consen 120 GKESIIAANHWYLPAAEFDGLWESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQ 199 (423)
T ss_pred chhhhhhhhheeccchhhhhhHHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHH
Confidence 6666665433222334454444443333333444433333222211111 23347899999999999999999999
Q ss_pred HhCC---------ceEEeecccccccccCCcHHHHHHHHHHHHHhhhhcCCceEEEeecccccCCCC-C-CCcccch-hH
Q 019334 97 AMGI---------EPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRF-G-NTQMTVN-NQ 164 (342)
Q Consensus 97 ~~g~---------~~i~vs~~eL~s~~~GEsEr~iR~~F~~A~e~~~~~~~PcILfIDEIDAg~~r~-~-~t~~~v~-~q 164 (342)
++.+ -+|.+++..|+|||.+||.|++..+|.+-.|++...+..-++.|||+++++..| . .++.... .=
T Consensus 200 kLSIR~~~~y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaI 279 (423)
T KOG0744|consen 200 KLSIRTNDRYYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAI 279 (423)
T ss_pred hheeeecCccccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHH
Confidence 9976 578899999999999999999999999999999888999999999999976533 2 2221111 23
Q ss_pred HHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCCccCCCCCCCCcceecC--CCHHHHHHHHHHHhhcCCC
Q 019334 165 IVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQ--PNLEDILNIVHRMYEKDGI 242 (342)
Q Consensus 165 ~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~~~LdpaLlRpGRfD~~i~v--P~~~~R~~Il~~~~~~~~~ 242 (342)
||+.+||+.+| + -++.++|.|.+|.|--++||-|+.- |-|-..|+ |+.++|.+|++.+...
T Consensus 280 RvVNalLTQlD-----r-------lK~~~NvliL~TSNl~~siD~AfVD--RADi~~yVG~Pt~~ai~~IlkscieE--- 342 (423)
T KOG0744|consen 280 RVVNALLTQLD-----R-------LKRYPNVLILATSNLTDSIDVAFVD--RADIVFYVGPPTAEAIYEILKSCIEE--- 342 (423)
T ss_pred HHHHHHHHHHH-----H-------hccCCCEEEEeccchHHHHHHHhhh--HhhheeecCCccHHHHHHHHHHHHHH---
Confidence 57778888888 2 2336799999999999999999987 88876665 9999999999976632
Q ss_pred CHHHHHHHhhcCCCCccchHHHHHHHHHHHHHHHHHHHcCCcchhhhhhhcccCCCCCCc------ccCCcCCHH----H
Q 019334 243 TKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPV------FTPPEKTVE----A 312 (342)
Q Consensus 243 s~~di~~lvd~f~~~~~df~gAlrs~~~~e~ir~w~~~~~g~~~~~~~l~~~~~~~~~~~------~~~~~~~~~----~ 312 (342)
+...=.-.+.|. .-+-.-...|.+..+.|+.+. -..+++.|-++ |+|. |.++..|++ +
T Consensus 343 ----L~~~gIi~~~~~--s~~~~~~i~~~~~~~~~~~~~-~~~gLSGRtlr-----kLP~Laha~y~~~~~v~~~~fl~a 410 (423)
T KOG0744|consen 343 ----LISSGIILFHQR--STGVKEFIKYQKALRNILIEL-STVGLSGRTLR-----KLPLLAHAEYFRTFTVDLSNFLLA 410 (423)
T ss_pred ----HHhcCeeeeecc--chhhhHHhHhhHhHHHHHHHH-hhcCCccchHh-----hhhHHHHHhccCCCccChHHHHHH
Confidence 111100001111 011222455666677787776 45555554432 2332 344455544 5
Q ss_pred HHHHHHHHHHHH
Q 019334 313 LLESGYSLLREQ 324 (342)
Q Consensus 313 l~~~g~~l~~eq 324 (342)
|+++.+.+..||
T Consensus 411 l~ea~~k~~~e~ 422 (423)
T KOG0744|consen 411 LLEAAKKLLSER 422 (423)
T ss_pred HHHHHHHHhhcc
Confidence 666666666665
No 40
>CHL00181 cbbX CbbX; Provisional
Probab=99.82 E-value=1.8e-19 Score=172.36 Aligned_cols=152 Identities=16% Similarity=0.223 Sum_probs=116.0
Q ss_pred CeEEEeecCCCCCHHHHHHHHHHHh---CC----ceEEeecccccccccCCcHHHHHHHHHHHHHhhhhcCCceEEEeec
Q 019334 74 PLILGIWGGKGQGKSFQTELIFQAM---GI----EPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMIND 146 (342)
Q Consensus 74 PlglgL~GPPG~GKTllaravA~~~---g~----~~i~vs~~eL~s~~~GEsEr~iR~~F~~A~e~~~~~~~PcILfIDE 146 (342)
++.++|+||||||||++|+++|+.+ |. +++.++.++|+++|+|++++.++++|++|. ++||||||
T Consensus 59 ~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~l~~a~--------ggVLfIDE 130 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDLVGQYIGHTAPKTKEVLKKAM--------GGVLFIDE 130 (287)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHHHHHHhccchHHHHHHHHHcc--------CCEEEEEc
Confidence 3568999999999999999999875 22 689999999999999999999998887763 68999999
Q ss_pred ccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCC-----CCccCCCCCCCCccee
Q 019334 147 IDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFS-----TIYAPLIRDGRMEKFY 221 (342)
Q Consensus 147 IDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~~-----~LdpaLlRpGRfD~~i 221 (342)
+|...+..+... . .+.+..+|+.+|++ . ..++.||+||+... .++|+|+| ||+..+
T Consensus 131 ~~~l~~~~~~~~--~-~~e~~~~L~~~me~-------------~-~~~~~vI~ag~~~~~~~~~~~np~L~s--R~~~~i 191 (287)
T CHL00181 131 AYYLYKPDNERD--Y-GSEAIEILLQVMEN-------------Q-RDDLVVIFAGYKDRMDKFYESNPGLSS--RIANHV 191 (287)
T ss_pred cchhccCCCccc--h-HHHHHHHHHHHHhc-------------C-CCCEEEEEeCCcHHHHHHHhcCHHHHH--hCCceE
Confidence 999864332211 1 24567788888773 1 34577888876422 34699999 999877
Q ss_pred cC--CCHHHHHHHHHHHhhcCC--CCHHHHHHHhh
Q 019334 222 WQ--PNLEDILNIVHRMYEKDG--ITKDEVGSIVK 252 (342)
Q Consensus 222 ~v--P~~~~R~~Il~~~~~~~~--~s~~di~~lvd 252 (342)
.. ++.+++.+|++.+++..+ ++.+.+..+.+
T Consensus 192 ~F~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L~~ 226 (287)
T CHL00181 192 DFPDYTPEELLQIAKIMLEEQQYQLTPEAEKALLD 226 (287)
T ss_pred EcCCcCHHHHHHHHHHHHHHhcCCCChhHHHHHHH
Confidence 64 689999999999988664 56655555544
No 41
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.82 E-value=2.1e-19 Score=167.76 Aligned_cols=151 Identities=18% Similarity=0.220 Sum_probs=111.9
Q ss_pred CeEEEeecCCCCCHHHHHHHHHHHh---C----CceEEeecccccccccCCcHHHHHHHHHHHHHhhhhcCCceEEEeec
Q 019334 74 PLILGIWGGKGQGKSFQTELIFQAM---G----IEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMIND 146 (342)
Q Consensus 74 PlglgL~GPPG~GKTllaravA~~~---g----~~~i~vs~~eL~s~~~GEsEr~iR~~F~~A~e~~~~~~~PcILfIDE 146 (342)
+..++||||||||||++|+++|+.+ + .+++.++++++.++|+|+.++.+++.|++|. ++||||||
T Consensus 42 ~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~l~~~~~g~~~~~~~~~~~~a~--------~~VL~IDE 113 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERADLVGEYIGHTAQKTREVIKKAL--------GGVLFIDE 113 (261)
T ss_pred cceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHHhhhhhccchHHHHHHHHHhcc--------CCEEEEec
Confidence 3578999999999999999999864 3 3788999999999999999999999997763 68999999
Q ss_pred ccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeC-----CCCCCccCCCCCCCCccee
Q 019334 147 IDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGN-----DFSTIYAPLIRDGRMEKFY 221 (342)
Q Consensus 147 IDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTN-----r~~~LdpaLlRpGRfD~~i 221 (342)
+|.+.. .+... .++....+|+..|++ . ...+.+|+|++ ....++|+|++ ||+..+
T Consensus 114 ~~~L~~-~~~~~---~~~~~i~~Ll~~~e~-------------~-~~~~~vila~~~~~~~~~~~~~p~L~s--Rf~~~i 173 (261)
T TIGR02881 114 AYSLAR-GGEKD---FGKEAIDTLVKGMED-------------N-RNEFVLILAGYSDEMDYFLSLNPGLRS--RFPISI 173 (261)
T ss_pred hhhhcc-CCccc---hHHHHHHHHHHHHhc-------------c-CCCEEEEecCCcchhHHHHhcChHHHh--ccceEE
Confidence 999863 11111 123455678877663 1 24455555543 22347889988 998766
Q ss_pred cC--CCHHHHHHHHHHHhhcCC--CCHHHHHHHhh
Q 019334 222 WQ--PNLEDILNIVHRMYEKDG--ITKDEVGSIVK 252 (342)
Q Consensus 222 ~v--P~~~~R~~Il~~~~~~~~--~s~~di~~lvd 252 (342)
.. ++.+++.+|++.++...+ ++.+-+..+.+
T Consensus 174 ~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l~~ 208 (261)
T TIGR02881 174 DFPDYTVEELMEIAERMVKEREYKLTEEAKWKLRE 208 (261)
T ss_pred EECCCCHHHHHHHHHHHHHHcCCccCHHHHHHHHH
Confidence 65 588999999998888665 55555555543
No 42
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=1.2e-19 Score=182.54 Aligned_cols=184 Identities=17% Similarity=0.229 Sum_probs=127.8
Q ss_pred ccHHHHHHHHHHHHHHHHHh-------------hcCCCCCeEEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccccc
Q 019334 48 IAPVFMASLLCHIVKNYIAH-------------LLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESER 114 (342)
Q Consensus 48 ~~~~f~d~l~~hi~K~~l~~-------------~~~~k~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~~ 114 (342)
.|..|--..+..-+|+-+.+ ..|...-+|-|||||||||||+++-|+|+.++-.+.-+.-+++-.
T Consensus 196 HpstF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~-- 273 (457)
T KOG0743|consen 196 HPSTFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKL-- 273 (457)
T ss_pred CCCCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccC--
Confidence 45555555555555555533 235445589999999999999999999999999988888777663
Q ss_pred cCCcHHHHHHHHHHHHHhhhhcCCceEEEeecccccCCCCC-CCc---ccc--hhHHHHHHHHhhcCCCCccccCccccc
Q 019334 115 AGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQ---MTV--NNQIVVGTLMNLSDNPTRVSIGQDWRE 188 (342)
Q Consensus 115 ~GEsEr~iR~~F~~A~e~~~~~~~PcILfIDEIDAg~~r~~-~t~---~~v--~~q~V~~tLl~llD~p~~v~l~g~~~~ 188 (342)
.+| +|.+...+. .-+||.|.|||+.+--++ ... ... .++...+-|||.+|| .|..
T Consensus 274 --n~d--Lr~LL~~t~-------~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDG--------lwSs 334 (457)
T KOG0743|consen 274 --DSD--LRHLLLATP-------NKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDG--------LWSS 334 (457)
T ss_pred --cHH--HHHHHHhCC-------CCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhcc--------cccc
Confidence 455 787775553 358999999999654222 111 111 123445678988886 6865
Q ss_pred cCCCCCccEEEeeCCCCCCccCCCCCCCCcceecCC--CHHHHHHHHHHHhhcCC--CCHHHHHHHhhcC
Q 019334 189 SDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQP--NLEDILNIVHRMYEKDG--ITKDEVGSIVKTF 254 (342)
Q Consensus 189 ~~~~~~V~VIatTNr~~~LdpaLlRpGRfD~~i~vP--~~~~R~~Il~~~~~~~~--~s~~di~~lvd~f 254 (342)
.. ..-.||.|||-++.|||||+||||||.+|++. +.++=..+++.++.-+. .=..||+++++.-
T Consensus 335 cg--~ERIivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~~h~L~~eie~l~~~~ 402 (457)
T KOG0743|consen 335 CG--DERIIVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEEDHRLFDEIERLIEET 402 (457)
T ss_pred CC--CceEEEEecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCCCcchhHHHHHHhhcC
Confidence 43 34568999999999999999999999999874 44554445555555432 3346777777644
No 43
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.81 E-value=4.8e-19 Score=168.81 Aligned_cols=152 Identities=14% Similarity=0.174 Sum_probs=116.8
Q ss_pred CeEEEeecCCCCCHHHHHHHHHHHhC-------CceEEeecccccccccCCcHHHHHHHHHHHHHhhhhcCCceEEEeec
Q 019334 74 PLILGIWGGKGQGKSFQTELIFQAMG-------IEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMIND 146 (342)
Q Consensus 74 PlglgL~GPPG~GKTllaravA~~~g-------~~~i~vs~~eL~s~~~GEsEr~iR~~F~~A~e~~~~~~~PcILfIDE 146 (342)
.+.++|+||||||||++|+++|..+. -+++.+++++|+++|.|+++..+++.|++|. +++|||||
T Consensus 58 ~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~~~~~g~~~~~~~~~~~~a~--------~gvL~iDE 129 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEILKRAM--------GGVLFIDE 129 (284)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHHhHhhcccchHHHHHHHHHcc--------CcEEEEec
Confidence 35899999999999999999998763 2799999999999999999999999998763 69999999
Q ss_pred ccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCC--CCC---CccCCCCCCCCccee
Q 019334 147 IDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGND--FST---IYAPLIRDGRMEKFY 221 (342)
Q Consensus 147 IDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr--~~~---LdpaLlRpGRfD~~i 221 (342)
||.+.++++... ..+.+..+|+++|++ . ..++.||+||+. ++. ++|+|.+ ||+..+
T Consensus 130 i~~L~~~~~~~~---~~~~~~~~Ll~~le~-------------~-~~~~~vI~a~~~~~~~~~~~~np~L~s--R~~~~i 190 (284)
T TIGR02880 130 AYYLYRPDNERD---YGQEAIEILLQVMEN-------------Q-RDDLVVILAGYKDRMDSFFESNPGFSS--RVAHHV 190 (284)
T ss_pred hhhhccCCCccc---hHHHHHHHHHHHHhc-------------C-CCCEEEEEeCCcHHHHHHHhhCHHHHh--hCCcEE
Confidence 999865433211 134567788888873 1 346778888653 333 4799999 999877
Q ss_pred cC--CCHHHHHHHHHHHhhcCC--CCHHHHHHHhh
Q 019334 222 WQ--PNLEDILNIVHRMYEKDG--ITKDEVGSIVK 252 (342)
Q Consensus 222 ~v--P~~~~R~~Il~~~~~~~~--~s~~di~~lvd 252 (342)
.. ++.+++.+|++.+++... ++.+.++.+.+
T Consensus 191 ~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~ 225 (284)
T TIGR02880 191 DFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFAD 225 (284)
T ss_pred EeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHH
Confidence 65 588999999999888754 56555555543
No 44
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=5.5e-19 Score=178.33 Aligned_cols=186 Identities=20% Similarity=0.199 Sum_probs=149.1
Q ss_pred hcCCCCCeEEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccccccCCcHHHHHHHHHHHHHhhhhcCCceEEEeecc
Q 019334 68 LLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDI 147 (342)
Q Consensus 68 ~~~~k~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~~~GEsEr~iR~~F~~A~e~~~~~~~PcILfIDEI 147 (342)
..+..+|.++++|||||||||++++++|.+ ++.+..++++++.++|.|++++.+|..|..|... +||++|+||+
T Consensus 12 ~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~-----~~~ii~~d~~ 85 (494)
T COG0464 12 KLGIEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKL-----APSIIFIDEI 85 (494)
T ss_pred HhCCCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHh-----CCCeEeechh
Confidence 567899999999999999999999999999 8888999999999999999999999999999754 5899999999
Q ss_pred cccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCCccCCCCCCCCcceec--CCC
Q 019334 148 DAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYW--QPN 225 (342)
Q Consensus 148 DAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~~~LdpaLlRpGRfD~~i~--vP~ 225 (342)
|+.++++...+..+ .+.+.++|+.++|+ +. ... |.++++||++..++++++||||||+.+. .|+
T Consensus 86 ~~~~~~~~~~~~~~-~~~v~~~l~~~~d~---------~~---~~~-v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 151 (494)
T COG0464 86 DALAPKRSSDQGEV-ERRVVAQLLALMDG---------LK---RGQ-VIVIGATNRPDGLDPAKRRPGRFDREIEVNLPD 151 (494)
T ss_pred hhcccCccccccch-hhHHHHHHHHhccc---------cc---CCc-eEEEeecCCccccChhHhCccccceeeecCCCC
Confidence 99998877533333 35688899999995 22 245 8899999999999999999999999876 499
Q ss_pred HHHHHHHHHHHhhcCCCC----HHHHHHHhhcCCCCccchHHHHHHHHHHHHHHHHHHH
Q 019334 226 LEDILNIVHRMYEKDGIT----KDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDD 280 (342)
Q Consensus 226 ~~~R~~Il~~~~~~~~~s----~~di~~lvd~f~~~~~df~gAlrs~~~~e~ir~w~~~ 280 (342)
...|.+|++.+....... ...+...+.+| .+|....++.+....++..
T Consensus 152 ~~~~~ei~~~~~~~~~~~~~~~~~~~a~~~~~~-------~~~~~~~l~~~~~~~~~~r 203 (494)
T COG0464 152 EAGRLEILQIHTRLMFLGPPGTGKTLAARTVGK-------SGADLGALAKEAALRELRR 203 (494)
T ss_pred HHHHHHHHHHHHhcCCCcccccHHHHHHhcCCc-------cHHHHHHHHHHHHHHHHHh
Confidence 999999999888766544 44554444444 4444444554444444433
No 45
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.79 E-value=4.2e-18 Score=181.78 Aligned_cols=163 Identities=23% Similarity=0.275 Sum_probs=118.9
Q ss_pred eEEEeecCCCCCHHHHHHHHHHHhCCceEEeeccccc---------ccccCCcHHHHHHHHHHHHHhhhhcCCceEEEee
Q 019334 75 LILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELE---------SERAGEPGKLIRERYRTASQVVQNQGKMSCLMIN 145 (342)
Q Consensus 75 lglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~---------s~~~GEsEr~iR~~F~~A~e~~~~~~~PcILfID 145 (342)
.+++||||||||||++|+++|+.++.+++.++.+.+. +.|+|.....+++.|..|.. ..| |||||
T Consensus 348 ~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~~~~~g~~~g~i~~~l~~~~~-----~~~-villD 421 (775)
T TIGR00763 348 PILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHRRTYVGAMPGRIIQGLKKAKT-----KNP-LFLLD 421 (775)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCCCceeCCCCchHHHHHHHhCc-----CCC-EEEEe
Confidence 3799999999999999999999999999999876543 36899999999999987742 234 88999
Q ss_pred cccccCCCCCCCcccchhHHHHHHHHhhcCCCCccc-cCccccc--cCCCCCccEEEeeCCCCCCccCCCCCCCCcceec
Q 019334 146 DIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVS-IGQDWRE--SDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYW 222 (342)
Q Consensus 146 EIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~-l~g~~~~--~~~~~~V~VIatTNr~~~LdpaLlRpGRfD~~i~ 222 (342)
|||+..+.+. ++ ....|++++|...+-. ++. +.. .+ .++|++|+|||+++.|||||++ ||+.+.+
T Consensus 422 Eidk~~~~~~---~~-----~~~aLl~~ld~~~~~~f~d~-~~~~~~d-~s~v~~I~TtN~~~~i~~~L~~--R~~vi~~ 489 (775)
T TIGR00763 422 EIDKIGSSFR---GD-----PASALLEVLDPEQNNAFSDH-YLDVPFD-LSKVIFIATANSIDTIPRPLLD--RMEVIEL 489 (775)
T ss_pred chhhcCCccC---CC-----HHHHHHHhcCHHhcCccccc-cCCceec-cCCEEEEEecCCchhCCHHHhC--CeeEEec
Confidence 9999875322 11 2346788887311100 000 101 11 3579999999999999999998 9975433
Q ss_pred C-CCHHHHHHHHHHHhh-----c-----C--CCCHHHHHHHhhcCC
Q 019334 223 Q-PNLEDILNIVHRMYE-----K-----D--GITKDEVGSIVKTFP 255 (342)
Q Consensus 223 v-P~~~~R~~Il~~~~~-----~-----~--~~s~~di~~lvd~f~ 255 (342)
. |+.+++.+|++.++. . . .++.+.+..++..|.
T Consensus 490 ~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~ 535 (775)
T TIGR00763 490 SGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIKYYT 535 (775)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHHhcC
Confidence 3 799999999987651 1 1 357778888887653
No 46
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.79 E-value=1.1e-18 Score=185.08 Aligned_cols=167 Identities=16% Similarity=0.197 Sum_probs=124.9
Q ss_pred CCCCeEEEeecCCCCCHHHHHHHHHHHh----------CCceEEeeccccc--ccccCCcHHHHHHHHHHHHHhhhhcCC
Q 019334 71 VKVPLILGIWGGKGQGKSFQTELIFQAM----------GIEPVIMSAGELE--SERAGEPGKLIRERYRTASQVVQNQGK 138 (342)
Q Consensus 71 ~k~PlglgL~GPPG~GKTllaravA~~~----------g~~~i~vs~~eL~--s~~~GEsEr~iR~~F~~A~e~~~~~~~ 138 (342)
.+.+..++|+||||||||++|+++|.++ +..++.++.+.++ .+|.|+.|+.++++|++|.+ ..
T Consensus 200 ~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~a~~~~~g~~e~~l~~i~~~~~~-----~~ 274 (731)
T TIGR02639 200 RRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLLAGTKYRGDFEERLKAVVSEIEK-----EP 274 (731)
T ss_pred cCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHhhhccccchHHHHHHHHHHHHhc-----cC
Confidence 3455678999999999999999999998 8889999999999 47999999999999998864 35
Q ss_pred ceEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCC-----CCCccCCCC
Q 019334 139 MSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDF-----STIYAPLIR 213 (342)
Q Consensus 139 PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~-----~~LdpaLlR 213 (342)
|+||||||||.+++.+.+.+++.. +...|...+. ...+.+|+|||.. -.+|+||.|
T Consensus 275 ~~ILfiDEih~l~~~g~~~~~~~~---~~~~L~~~l~----------------~g~i~~IgaTt~~e~~~~~~~d~al~r 335 (731)
T TIGR02639 275 NAILFIDEIHTIVGAGATSGGSMD---ASNLLKPALS----------------SGKLRCIGSTTYEEYKNHFEKDRALSR 335 (731)
T ss_pred CeEEEEecHHHHhccCCCCCccHH---HHHHHHHHHh----------------CCCeEEEEecCHHHHHHHhhhhHHHHH
Confidence 999999999998765432222211 2222332222 2468899999863 358999999
Q ss_pred CCCCcceec-CCCHHHHHHHHHHHhhc------CCCCHHHHHHHhh---c------CCCCccchHH
Q 019334 214 DGRMEKFYW-QPNLEDILNIVHRMYEK------DGITKDEVGSIVK---T------FPNQALDFYG 263 (342)
Q Consensus 214 pGRfD~~i~-vP~~~~R~~Il~~~~~~------~~~s~~di~~lvd---~------f~~~~~df~g 263 (342)
||..+.. .|+.+++.+||+.+... -.++++.++.++. . +|+..+|+..
T Consensus 336 --Rf~~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~~r~~P~kai~lld 399 (731)
T TIGR02639 336 --RFQKIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYINDRFLPDKAIDVID 399 (731)
T ss_pred --hCceEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhcccccccCCHHHHHHHH
Confidence 9986433 49999999999965442 2478888777773 2 3666677763
No 47
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.72 E-value=3.3e-17 Score=175.03 Aligned_cols=186 Identities=18% Similarity=0.185 Sum_probs=132.0
Q ss_pred HHHHHHHHHHHHHHHHh-----------------hcCCCCCeEEEeecCCCCCHHHHHHHHHHHh----------CCceE
Q 019334 51 VFMASLLCHIVKNYIAH-----------------LLNVKVPLILGIWGGKGQGKSFQTELIFQAM----------GIEPV 103 (342)
Q Consensus 51 ~f~d~l~~hi~K~~l~~-----------------~~~~k~PlglgL~GPPG~GKTllaravA~~~----------g~~~i 103 (342)
.++++++..+.+..... .+..+.+.-++|+||||||||++|+++|... +..++
T Consensus 167 ~~l~~~~~~l~~~a~~g~~~~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~ 246 (758)
T PRK11034 167 ERMENFTTNLNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIY 246 (758)
T ss_pred hHHHHHHHhHHHHHHcCCCCcCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEE
Confidence 47777777776654431 1223445567889999999999999999874 67788
Q ss_pred Eeeccccc--ccccCCcHHHHHHHHHHHHHhhhhcCCceEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccc
Q 019334 104 IMSAGELE--SERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVS 181 (342)
Q Consensus 104 ~vs~~eL~--s~~~GEsEr~iR~~F~~A~e~~~~~~~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~ 181 (342)
.++.+.++ .+|.|+.|+.++.+|.++.+ ..++||||||||.+++.++++++. ..+...|..++.
T Consensus 247 ~l~~~~llaG~~~~Ge~e~rl~~l~~~l~~-----~~~~ILfIDEIh~L~g~g~~~~g~---~d~~nlLkp~L~------ 312 (758)
T PRK11034 247 SLDIGSLLAGTKYRGDFEKRFKALLKQLEQ-----DTNSILFIDEIHTIIGAGAASGGQ---VDAANLIKPLLS------ 312 (758)
T ss_pred eccHHHHhcccchhhhHHHHHHHHHHHHHh-----cCCCEEEeccHHHHhccCCCCCcH---HHHHHHHHHHHh------
Confidence 88888888 46899999999999987753 358999999999988755422221 122223332222
Q ss_pred cCccccccCCCCCccEEEeeCCCC-----CCccCCCCCCCCcceec-CCCHHHHHHHHHHHhh------cCCCCHHHHHH
Q 019334 182 IGQDWRESDITNRIPIIFTGNDFS-----TIYAPLIRDGRMEKFYW-QPNLEDILNIVHRMYE------KDGITKDEVGS 249 (342)
Q Consensus 182 l~g~~~~~~~~~~V~VIatTNr~~-----~LdpaLlRpGRfD~~i~-vP~~~~R~~Il~~~~~------~~~~s~~di~~ 249 (342)
...+.||+|||.++ .+||||.| ||+++.. .|+.+++..||+.+.. +-.++.+-++.
T Consensus 313 ----------~g~i~vIgATt~~E~~~~~~~D~AL~r--RFq~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~ 380 (758)
T PRK11034 313 ----------SGKIRVIGSTTYQEFSNIFEKDRALAR--RFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRA 380 (758)
T ss_pred ----------CCCeEEEecCChHHHHHHhhccHHHHh--hCcEEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHH
Confidence 35699999999875 58999999 9986433 4999999999997543 22356666665
Q ss_pred Hhh---c------CCCCccchH
Q 019334 250 IVK---T------FPNQALDFY 262 (342)
Q Consensus 250 lvd---~------f~~~~~df~ 262 (342)
+++ . +|+..+|+.
T Consensus 381 a~~ls~ryi~~r~lPdKaidll 402 (758)
T PRK11034 381 AVELAVKYINDRHLPDKAIDVI 402 (758)
T ss_pred HHHHhhccccCccChHHHHHHH
Confidence 553 2 355667776
No 48
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.70 E-value=1.1e-16 Score=172.82 Aligned_cols=154 Identities=18% Similarity=0.204 Sum_probs=115.0
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHh----------CCceEEeeccccc--ccccCCcHHHHHHHHHHHHHhhhhcCCc
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQAM----------GIEPVIMSAGELE--SERAGEPGKLIRERYRTASQVVQNQGKM 139 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~~----------g~~~i~vs~~eL~--s~~~GEsEr~iR~~F~~A~e~~~~~~~P 139 (342)
+....++|+||||||||++|+++|..+ +.+++.++.+.++ .+|.|+.|+.++++|.++.. .+.|
T Consensus 197 ~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~ag~~~~g~~e~~lk~~~~~~~~----~~~~ 272 (857)
T PRK10865 197 RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAK----QEGN 272 (857)
T ss_pred CCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhhhccchhhhhHHHHHHHHHHHHH----cCCC
Confidence 334467799999999999999999998 8899999999988 46899999999999987643 3569
Q ss_pred eEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCC-----CCccCCCCC
Q 019334 140 SCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFS-----TIYAPLIRD 214 (342)
Q Consensus 140 cILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~~-----~LdpaLlRp 214 (342)
||||||||+.+++..++.+ .+. ....|...+. ...+.+|+|||..+ .+|+||.|
T Consensus 273 ~ILfIDEih~l~~~~~~~~-~~d---~~~~lkp~l~----------------~g~l~~IgaTt~~e~r~~~~~d~al~r- 331 (857)
T PRK10865 273 VILFIDELHTMVGAGKADG-AMD---AGNMLKPALA----------------RGELHCVGATTLDEYRQYIEKDAALER- 331 (857)
T ss_pred eEEEEecHHHhccCCCCcc-chh---HHHHhcchhh----------------cCCCeEEEcCCCHHHHHHhhhcHHHHh-
Confidence 9999999999876543222 211 1112221111 35789999999987 48999999
Q ss_pred CCCcceec-CCCHHHHHHHHHHHhhc------CCCCHHHHHHHh
Q 019334 215 GRMEKFYW-QPNLEDILNIVHRMYEK------DGITKDEVGSIV 251 (342)
Q Consensus 215 GRfD~~i~-vP~~~~R~~Il~~~~~~------~~~s~~di~~lv 251 (342)
||+.++. .|+.+++..||+.+... -.++.+.+...+
T Consensus 332 -Rf~~i~v~eP~~~~~~~iL~~l~~~~e~~~~v~~~d~a~~~a~ 374 (857)
T PRK10865 332 -RFQKVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAA 374 (857)
T ss_pred -hCCEEEeCCCCHHHHHHHHHHHhhhhccCCCCCcCHHHHHHHH
Confidence 9987543 49999999999876542 134565555543
No 49
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.69 E-value=1.8e-16 Score=171.29 Aligned_cols=165 Identities=15% Similarity=0.145 Sum_probs=119.6
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHh----------CCceEEeecccccc--cccCCcHHHHHHHHHHHHHhhhhcCCc
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQAM----------GIEPVIMSAGELES--ERAGEPGKLIRERYRTASQVVQNQGKM 139 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~~----------g~~~i~vs~~eL~s--~~~GEsEr~iR~~F~~A~e~~~~~~~P 139 (342)
+....++|+||||||||++|+.+|..+ +..++.++.+.|.+ ++.||.|+.++++|.++.+ .+.+
T Consensus 206 ~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag~~~~ge~e~~lk~ii~e~~~----~~~~ 281 (852)
T TIGR03345 206 RRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGASVKGEFENRLKSVIDEVKA----SPQP 281 (852)
T ss_pred CCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhcccccchHHHHHHHHHHHHHHh----cCCC
Confidence 333467899999999999999999986 35688899998885 6999999999999998854 3579
Q ss_pred eEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCC-----CCCccCCCCC
Q 019334 140 SCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDF-----STIYAPLIRD 214 (342)
Q Consensus 140 cILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~-----~~LdpaLlRp 214 (342)
+|||||||+.+.+.+++.+. +-+...|...+. ...+.+|+|||.. -.+||||.|
T Consensus 282 ~ILfIDEih~l~~~g~~~~~----~d~~n~Lkp~l~----------------~G~l~~IgaTT~~e~~~~~~~d~AL~r- 340 (852)
T TIGR03345 282 IILFIDEAHTLIGAGGQAGQ----GDAANLLKPALA----------------RGELRTIAATTWAEYKKYFEKDPALTR- 340 (852)
T ss_pred eEEEEeChHHhccCCCcccc----ccHHHHhhHHhh----------------CCCeEEEEecCHHHHhhhhhccHHHHH-
Confidence 99999999998875442111 111112222111 3468899998864 359999999
Q ss_pred CCCcceec-CCCHHHHHHHHHHHhhc------CCCCHHHHHHHhh---------cCCCCccchH
Q 019334 215 GRMEKFYW-QPNLEDILNIVHRMYEK------DGITKDEVGSIVK---------TFPNQALDFY 262 (342)
Q Consensus 215 GRfD~~i~-vP~~~~R~~Il~~~~~~------~~~s~~di~~lvd---------~f~~~~~df~ 262 (342)
||..+.. .|+.+++..||+.+.+. -.++++.+..++. .+|+..||+.
T Consensus 341 -Rf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~~r~LPDKAIdll 403 (852)
T TIGR03345 341 -RFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIPGRQLPDKAVSLL 403 (852)
T ss_pred -hCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccccccccCccHHHHHH
Confidence 9975433 49999999998765432 2357777776663 2377778776
No 50
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.69 E-value=2.9e-16 Score=169.33 Aligned_cols=166 Identities=17% Similarity=0.197 Sum_probs=121.9
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHh----------CCceEEeeccccc--ccccCCcHHHHHHHHHHHHHhhhhcCCc
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQAM----------GIEPVIMSAGELE--SERAGEPGKLIRERYRTASQVVQNQGKM 139 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~~----------g~~~i~vs~~eL~--s~~~GEsEr~iR~~F~~A~e~~~~~~~P 139 (342)
+....++|+||||||||++|+++|..+ +.+++.++.+.++ .+|.|+.|+.++.+|+++.. .+.|
T Consensus 192 ~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l~a~~~~~g~~e~~l~~~l~~~~~----~~~~ 267 (852)
T TIGR03346 192 RTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGALIAGAKYRGEFEERLKAVLNEVTK----SEGQ 267 (852)
T ss_pred CCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHHhhcchhhhhHHHHHHHHHHHHHh----cCCC
Confidence 444567789999999999999999986 7889999999987 46999999999999988753 3469
Q ss_pred eEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCC-----CCccCCCCC
Q 019334 140 SCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFS-----TIYAPLIRD 214 (342)
Q Consensus 140 cILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~~-----~LdpaLlRp 214 (342)
+|||||||+.+++.+++.+ . ..+...|...+. ...+.+|+|||..+ .+||||.|
T Consensus 268 ~ILfIDEih~l~~~g~~~~-~---~d~~~~Lk~~l~----------------~g~i~~IgaTt~~e~r~~~~~d~al~r- 326 (852)
T TIGR03346 268 IILFIDELHTLVGAGKAEG-A---MDAGNMLKPALA----------------RGELHCIGATTLDEYRKYIEKDAALER- 326 (852)
T ss_pred eEEEeccHHHhhcCCCCcc-h---hHHHHHhchhhh----------------cCceEEEEeCcHHHHHHHhhcCHHHHh-
Confidence 9999999999875332211 1 112222221111 34689999998874 58999999
Q ss_pred CCCcceec-CCCHHHHHHHHHHHhhc------CCCCHHHHHHHhh---------cCCCCccchHH
Q 019334 215 GRMEKFYW-QPNLEDILNIVHRMYEK------DGITKDEVGSIVK---------TFPNQALDFYG 263 (342)
Q Consensus 215 GRfD~~i~-vP~~~~R~~Il~~~~~~------~~~s~~di~~lvd---------~f~~~~~df~g 263 (342)
||..++. .|+.+++..||+.+... -.++.+.+..++. .+|...||+..
T Consensus 327 -Rf~~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi~~r~lPdkAidlld 390 (852)
T TIGR03346 327 -RFQPVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYITDRFLPDKAIDLID 390 (852)
T ss_pred -cCCEEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhccccccccCCchHHHHHHH
Confidence 9987443 49999999999876443 2356777766663 23666777763
No 51
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.68 E-value=8.5e-16 Score=147.93 Aligned_cols=188 Identities=16% Similarity=0.118 Sum_probs=121.0
Q ss_pred ccccccHHHHHHHHHHHHHHHHHhh-----cCCCCCeEEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccccccCCc
Q 019334 44 GDYYIAPVFMASLLCHIVKNYIAHL-----LNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEP 118 (342)
Q Consensus 44 ~~~y~~~~f~d~l~~hi~K~~l~~~-----~~~k~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~~~GEs 118 (342)
+..|-|+.|.|-++..-.++.+... ..-.+|..++||||||||||++|+++|++++..+..++++.+..
T Consensus 16 ~~~~rP~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~------ 89 (328)
T PRK00080 16 ERSLRPKSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEK------ 89 (328)
T ss_pred hhhcCcCCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccC------
Confidence 3455666777766544444433321 12245678999999999999999999999999998888775432
Q ss_pred HHHHHHHHHHHHHhhhhcCCceEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCC-CccccCccccccC---CCCC
Q 019334 119 GKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNP-TRVSIGQDWRESD---ITNR 194 (342)
Q Consensus 119 Er~iR~~F~~A~e~~~~~~~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p-~~v~l~g~~~~~~---~~~~ 194 (342)
...+...+.. .+.++||||||||.+.+. . +.. |.+.+++. ..+.++....... ..++
T Consensus 90 ~~~l~~~l~~-------l~~~~vl~IDEi~~l~~~-------~--~e~---l~~~~e~~~~~~~l~~~~~~~~~~~~l~~ 150 (328)
T PRK00080 90 PGDLAAILTN-------LEEGDVLFIDEIHRLSPV-------V--EEI---LYPAMEDFRLDIMIGKGPAARSIRLDLPP 150 (328)
T ss_pred hHHHHHHHHh-------cccCCEEEEecHhhcchH-------H--HHH---HHHHHHhcceeeeeccCccccceeecCCC
Confidence 2234444432 235899999999987521 1 111 22222211 0111111111000 1245
Q ss_pred ccEEEeeCCCCCCccCCCCCCCCcceec--CCCHHHHHHHHHHHhhcCC--CCHHHHHHHhhcCCCCc
Q 019334 195 IPIIFTGNDFSTIYAPLIRDGRMEKFYW--QPNLEDILNIVHRMYEKDG--ITKDEVGSIVKTFPNQA 258 (342)
Q Consensus 195 V~VIatTNr~~~LdpaLlRpGRfD~~i~--vP~~~~R~~Il~~~~~~~~--~s~~di~~lvd~f~~~~ 258 (342)
+.+|+|||++..++++|+. ||...+. .|+.+++.+|++......+ ++.+.+..++..+.|.+
T Consensus 151 ~~li~at~~~~~l~~~L~s--Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~p 216 (328)
T PRK00080 151 FTLIGATTRAGLLTSPLRD--RFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGTP 216 (328)
T ss_pred ceEEeecCCcccCCHHHHH--hcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCCc
Confidence 7789999999999999976 8876554 3899999999998777654 67777888887666644
No 52
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=3.1e-16 Score=157.49 Aligned_cols=175 Identities=14% Similarity=0.183 Sum_probs=119.7
Q ss_pred hhhcccccccHHHHHHHHHHHHHHHHHhhcCCCCCeEEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccccccCCcH
Q 019334 40 EYLQGDYYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPG 119 (342)
Q Consensus 40 ~~~~~~~y~~~~f~d~l~~hi~K~~l~~~~~~k~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~~~GEsE 119 (342)
++-.++..++|+..-++ .+|+.---.-..+-.+=+-+++|||||||||+.||-+|...|+..-.|.+|++-- .=-+.-
T Consensus 351 k~pl~~ViL~psLe~Ri-e~lA~aTaNTK~h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAP-lG~qaV 428 (630)
T KOG0742|consen 351 KDPLEGVILHPSLEKRI-EDLAIATANTKKHQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAP-LGAQAV 428 (630)
T ss_pred CCCcCCeecCHHHHHHH-HHHHHHhcccccccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCccc-cchHHH
Confidence 33355666666544332 2222111110122123378999999999999999999999999999999999863 222445
Q ss_pred HHHHHHHHHHHHhhhhcCCceEEEeecccccCCCCCCCcccchhH-HHHHHHHhhcCCCCccccCccccccCCCCCccEE
Q 019334 120 KLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQ-IVVGTLMNLSDNPTRVSIGQDWRESDITNRIPII 198 (342)
Q Consensus 120 r~iR~~F~~A~e~~~~~~~PcILfIDEIDAg~~r~~~t~~~v~~q-~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VI 198 (342)
-.|.++|+=|.. +.+--+|||||.||.+..|..+......| -+++.|.- .-+..+.+..+
T Consensus 429 TkiH~lFDWakk----S~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfR---------------TGdqSrdivLv 489 (630)
T KOG0742|consen 429 TKIHKLFDWAKK----SRRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFR---------------TGDQSRDIVLV 489 (630)
T ss_pred HHHHHHHHHHhh----cccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHH---------------hcccccceEEE
Confidence 678999988764 56788999999999666555333222222 23333331 11224567788
Q ss_pred EeeCCCCCCccCCCCCCCCcceec--CCCHHHHHHHHHHHh
Q 019334 199 FTGNDFSTIYAPLIRDGRMEKFYW--QPNLEDILNIVHRMY 237 (342)
Q Consensus 199 atTNr~~~LdpaLlRpGRfD~~i~--vP~~~~R~~Il~~~~ 237 (342)
.|||||.+||.|.-- |+|+.+. +|..++|..+|..++
T Consensus 490 lAtNrpgdlDsAV~D--Ride~veFpLPGeEERfkll~lYl 528 (630)
T KOG0742|consen 490 LATNRPGDLDSAVND--RIDEVVEFPLPGEEERFKLLNLYL 528 (630)
T ss_pred eccCCccchhHHHHh--hhhheeecCCCChHHHHHHHHHHH
Confidence 899999999999876 9999765 599999999998654
No 53
>PRK04195 replication factor C large subunit; Provisional
Probab=99.66 E-value=3.5e-15 Score=151.32 Aligned_cols=178 Identities=17% Similarity=0.233 Sum_probs=120.7
Q ss_pred cccHHHHHHHHH----HHHHHHHHhhcCCCCCeEEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccccccCCcHHHH
Q 019334 47 YIAPVFMASLLC----HIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLI 122 (342)
Q Consensus 47 y~~~~f~d~l~~----hi~K~~l~~~~~~k~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~~~GEsEr~i 122 (342)
|-|..|.|.++. ..++.|+.....-.+|..++||||||||||++|+++|+++|.+++.+++++.-+ ...+
T Consensus 8 yrP~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~------~~~i 81 (482)
T PRK04195 8 YRPKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRT------ADVI 81 (482)
T ss_pred cCCCCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEccccccc------HHHH
Confidence 445555554432 334445443223355889999999999999999999999999999999987542 3456
Q ss_pred HHHHHHHHHhhhhcC-CceEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEee
Q 019334 123 RERYRTASQVVQNQG-KMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTG 201 (342)
Q Consensus 123 R~~F~~A~e~~~~~~-~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatT 201 (342)
++....+.......+ .+.||+|||+|.+.++.+ +-....|+.+++ ..+.+||.++
T Consensus 82 ~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~d--------~~~~~aL~~~l~----------------~~~~~iIli~ 137 (482)
T PRK04195 82 ERVAGEAATSGSLFGARRKLILLDEVDGIHGNED--------RGGARAILELIK----------------KAKQPIILTA 137 (482)
T ss_pred HHHHHHhhccCcccCCCCeEEEEecCcccccccc--------hhHHHHHHHHHH----------------cCCCCEEEec
Confidence 666655544322223 688999999999764321 112234554444 2457899999
Q ss_pred CCCCCCcc-CCCCCCCCcceec-CCCHHHHHHHHHHHhhcCC--CCHHHHHHHhhcCCC
Q 019334 202 NDFSTIYA-PLIRDGRMEKFYW-QPNLEDILNIVHRMYEKDG--ITKDEVGSIVKTFPN 256 (342)
Q Consensus 202 Nr~~~Ldp-aLlRpGRfD~~i~-vP~~~~R~~Il~~~~~~~~--~s~~di~~lvd~f~~ 256 (342)
|++..+++ +|++ |...+-+ .|+.++...+|+.++...+ ++.+.++.++....|
T Consensus 138 n~~~~~~~k~Lrs--r~~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~G 194 (482)
T PRK04195 138 NDPYDPSLRELRN--ACLMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGG 194 (482)
T ss_pred cCccccchhhHhc--cceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 99999988 5665 4433333 4899999999998887765 567777777765443
No 54
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.65 E-value=1.3e-15 Score=163.85 Aligned_cols=185 Identities=16% Similarity=0.226 Sum_probs=132.9
Q ss_pred HHHHHHHHHHHHHHHHh-----------------hcCCCCCeEEEeecCCCCCHHHHHHHHHHHh----------CCceE
Q 019334 51 VFMASLLCHIVKNYIAH-----------------LLNVKVPLILGIWGGKGQGKSFQTELIFQAM----------GIEPV 103 (342)
Q Consensus 51 ~f~d~l~~hi~K~~l~~-----------------~~~~k~PlglgL~GPPG~GKTllaravA~~~----------g~~~i 103 (342)
.++++++..+.+..... .+..+.+..++|+||||||||++|+++|.++ +..++
T Consensus 160 ~~l~~~~~~l~~~a~~~~~~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~ 239 (821)
T CHL00095 160 PTLEEFGTNLTKEAIDGNLDPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVI 239 (821)
T ss_pred hHHHHHHHHHHHHHHcCCCCCCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEE
Confidence 47788877777764321 2345666788999999999999999999987 47899
Q ss_pred Eeecccccc--cccCCcHHHHHHHHHHHHHhhhhcCCceEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccc
Q 019334 104 IMSAGELES--ERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVS 181 (342)
Q Consensus 104 ~vs~~eL~s--~~~GEsEr~iR~~F~~A~e~~~~~~~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~ 181 (342)
.++.+.|+. +|.||.|+.|+++|.++.. ..++||||||||.+++..++.+ ++. +...|...+.
T Consensus 240 ~l~~~~l~ag~~~~ge~e~rl~~i~~~~~~-----~~~~ILfiDEih~l~~~g~~~g-~~~---~a~lLkp~l~------ 304 (821)
T CHL00095 240 TLDIGLLLAGTKYRGEFEERLKRIFDEIQE-----NNNIILVIDEVHTLIGAGAAEG-AID---AANILKPALA------ 304 (821)
T ss_pred EeeHHHHhccCCCccHHHHHHHHHHHHHHh-----cCCeEEEEecHHHHhcCCCCCC-ccc---HHHHhHHHHh------
Confidence 999999984 7899999999999998853 3589999999999886543222 211 1112221111
Q ss_pred cCccccccCCCCCccEEEeeCCCC-----CCccCCCCCCCCcceec-CCCHHHHHHHHHHHhh------cCCCCHHHHHH
Q 019334 182 IGQDWRESDITNRIPIIFTGNDFS-----TIYAPLIRDGRMEKFYW-QPNLEDILNIVHRMYE------KDGITKDEVGS 249 (342)
Q Consensus 182 l~g~~~~~~~~~~V~VIatTNr~~-----~LdpaLlRpGRfD~~i~-vP~~~~R~~Il~~~~~------~~~~s~~di~~ 249 (342)
...+.+|+|||..+ ..||+|.| ||..+.. .|+.++...|++.+.. .-.++.+-+..
T Consensus 305 ----------rg~l~~IgaTt~~ey~~~ie~D~aL~r--Rf~~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~ 372 (821)
T CHL00095 305 ----------RGELQCIGATTLDEYRKHIEKDPALER--RFQPVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEA 372 (821)
T ss_pred ----------CCCcEEEEeCCHHHHHHHHhcCHHHHh--cceEEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 34688999998764 58999999 9987433 4999999999975432 22367766665
Q ss_pred Hhh---c------CCCCccchH
Q 019334 250 IVK---T------FPNQALDFY 262 (342)
Q Consensus 250 lvd---~------f~~~~~df~ 262 (342)
++. . +|+..+|+.
T Consensus 373 i~~ls~~yi~~r~lPdkaidll 394 (821)
T CHL00095 373 AAKLSDQYIADRFLPDKAIDLL 394 (821)
T ss_pred HHHHhhccCccccCchHHHHHH
Confidence 553 2 366667776
No 55
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.62 E-value=7.2e-15 Score=138.51 Aligned_cols=158 Identities=18% Similarity=0.140 Sum_probs=104.1
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccccccCCcHHHHHHHHHHHHHhhhhcCCceEEEeecccccC
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGL 151 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~~~GEsEr~iR~~F~~A~e~~~~~~~PcILfIDEIDAg~ 151 (342)
..|..++||||||||||++|+++|++++..+..++++.+.. ...+.+.+.. .+.+++|||||||...
T Consensus 28 ~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~------~~~l~~~l~~-------~~~~~vl~iDEi~~l~ 94 (305)
T TIGR00635 28 EALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEK------PGDLAAILTN-------LEEGDVLFIDEIHRLS 94 (305)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcC------chhHHHHHHh-------cccCCEEEEehHhhhC
Confidence 45667899999999999999999999999887777664432 1122222211 2458999999999875
Q ss_pred CCCCCCcccchhHHHHHHHHhhcCCC-CccccCcccccc---CCCCCccEEEeeCCCCCCccCCCCCCCCcceec--CCC
Q 019334 152 GRFGNTQMTVNNQIVVGTLMNLSDNP-TRVSIGQDWRES---DITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYW--QPN 225 (342)
Q Consensus 152 ~r~~~t~~~v~~q~V~~tLl~llD~p-~~v~l~g~~~~~---~~~~~V~VIatTNr~~~LdpaLlRpGRfD~~i~--vP~ 225 (342)
+. ....|.+++++- ..+.++..+... ...+++.+|++||++..|+++|+. ||...+. .|+
T Consensus 95 ~~------------~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~~~l~~~l~s--R~~~~~~l~~l~ 160 (305)
T TIGR00635 95 PA------------VEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRAGMLTSPLRD--RFGIILRLEFYT 160 (305)
T ss_pred HH------------HHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCCccccCHHHHh--hcceEEEeCCCC
Confidence 31 112233333311 011111111110 113457899999999999999887 8876554 389
Q ss_pred HHHHHHHHHHHhhcC--CCCHHHHHHHhhcCCC
Q 019334 226 LEDILNIVHRMYEKD--GITKDEVGSIVKTFPN 256 (342)
Q Consensus 226 ~~~R~~Il~~~~~~~--~~s~~di~~lvd~f~~ 256 (342)
.+++.+|++...... .++.+.+..++....|
T Consensus 161 ~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G 193 (305)
T TIGR00635 161 VEELAEIVSRSAGLLNVEIEPEAALEIARRSRG 193 (305)
T ss_pred HHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCC
Confidence 999999999777644 4677777777765555
No 56
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.60 E-value=2.3e-14 Score=135.75 Aligned_cols=175 Identities=17% Similarity=0.251 Sum_probs=115.7
Q ss_pred cccccHHHHHHHHHHHHHHHHHhh-cCCCCCeEEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccccccCCcHHHHH
Q 019334 45 DYYIAPVFMASLLCHIVKNYIAHL-LNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIR 123 (342)
Q Consensus 45 ~~y~~~~f~d~l~~hi~K~~l~~~-~~~k~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~~~GEsEr~iR 123 (342)
.-|-|..|.|.++....+..+... -.-+.|..++||||||+|||++++++|++.+.+++.+++++ . . -..+|
T Consensus 13 ~kyrP~~~~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~--~----~-~~~i~ 85 (316)
T PHA02544 13 QKYRPSTIDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD--C----R-IDFVR 85 (316)
T ss_pred eccCCCcHHHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc--c----c-HHHHH
Confidence 346667777776544444444322 23467888999999999999999999999999999998876 2 1 22344
Q ss_pred HHHHHHHHhhhhcCCceEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCC
Q 019334 124 ERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGND 203 (342)
Q Consensus 124 ~~F~~A~e~~~~~~~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr 203 (342)
+............+.++||+|||+|..... ..+..|.++++. . ..++++|+|||.
T Consensus 86 ~~l~~~~~~~~~~~~~~vliiDe~d~l~~~-----------~~~~~L~~~le~-------------~-~~~~~~Ilt~n~ 140 (316)
T PHA02544 86 NRLTRFASTVSLTGGGKVIIIDEFDRLGLA-----------DAQRHLRSFMEA-------------Y-SKNCSFIITANN 140 (316)
T ss_pred HHHHHHHHhhcccCCCeEEEEECcccccCH-----------HHHHHHHHHHHh-------------c-CCCceEEEEcCC
Confidence 433333222222356899999999986211 012234444442 1 356789999999
Q ss_pred CCCCccCCCCCCCCcceec-CCCHHHHHHHHHHH-------hhcC--CCCHHHHHHHhhc
Q 019334 204 FSTIYAPLIRDGRMEKFYW-QPNLEDILNIVHRM-------YEKD--GITKDEVGSIVKT 253 (342)
Q Consensus 204 ~~~LdpaLlRpGRfD~~i~-vP~~~~R~~Il~~~-------~~~~--~~s~~di~~lvd~ 253 (342)
++.++|+|+. |+..+.+ .|+.+++.+|++.+ +.+. .++.+.+..++..
T Consensus 141 ~~~l~~~l~s--R~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~i~~~al~~l~~~ 198 (316)
T PHA02544 141 KNGIIEPLRS--RCRVIDFGVPTKEEQIEMMKQMIVRCKGILEAEGVEVDMKVLAALVKK 198 (316)
T ss_pred hhhchHHHHh--hceEEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHh
Confidence 9999999987 8876555 69999999887643 2223 3565566666643
No 57
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.60 E-value=4.4e-15 Score=149.91 Aligned_cols=156 Identities=17% Similarity=0.205 Sum_probs=121.1
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccc-cccC-CcHHHHHHHHHHHHHhhh---------------
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELES-ERAG-EPGKLIRERYRTASQVVQ--------------- 134 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s-~~~G-EsEr~iR~~F~~A~e~~~--------------- 134 (342)
-.|..++|+||||||||++|+++|+.++++|+.+++.++.. +|+| +.|+.+|.+|..|...+.
T Consensus 45 ~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~dvE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~a 124 (441)
T TIGR00390 45 VTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDVESMVRDLTDAAVKLVKEEAIEKVRDRAEELA 124 (441)
T ss_pred cCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 35789999999999999999999999999999999999884 8999 799999999998821000
Q ss_pred --------------------------------------------------------------------------------
Q 019334 135 -------------------------------------------------------------------------------- 134 (342)
Q Consensus 135 -------------------------------------------------------------------------------- 134 (342)
T Consensus 125 e~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (441)
T TIGR00390 125 EERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREGELDDKEIEIDVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNL 204 (441)
T ss_pred HHHHHHHhcCCccccccccccccchHHHHHHHHHHHhcCCccCcEEEEeecCCCCCccccCCCcchhHHHhhHHHHHHhh
Confidence
Q ss_pred ---------------------------------------hcCCceEEEeecccccCCCCCCCcccchhHHHHHHHHhhcC
Q 019334 135 ---------------------------------------NQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSD 175 (342)
Q Consensus 135 ---------------------------------------~~~~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD 175 (342)
..-.--|+||||||+++.+..+.+.+++..-|+.-||-++.
T Consensus 205 ~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~~~~e~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilE 284 (441)
T TIGR00390 205 GGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAIDAVEQSGIIFIDEIDKIAKKGESSGADVSREGVQRDLLPIVE 284 (441)
T ss_pred cCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEEEchhhhcccCCCCCCCCCccchhcccccccc
Confidence 01234599999999999765444456666678889999999
Q ss_pred CCCccccCccccccCCCCCccEEEee----CCCCCCccCCCCCCCCcceecC--CCHHHHHHHH
Q 019334 176 NPTRVSIGQDWRESDITNRIPIIFTG----NDFSTIYAPLIRDGRMEKFYWQ--PNLEDILNIV 233 (342)
Q Consensus 176 ~p~~v~l~g~~~~~~~~~~V~VIatT----Nr~~~LdpaLlRpGRfD~~i~v--P~~~~R~~Il 233 (342)
|. .|+.. +...+ +.++..|+++ ..|++|=|+|. |||-..+.. .+.++=..||
T Consensus 285 Gt-~v~~k--~~~v~-T~~ILFI~~GAF~~~kp~DlIPEl~--GR~Pi~v~L~~L~~edL~rIL 342 (441)
T TIGR00390 285 GS-TVNTK--YGMVK-TDHILFIAAGAFQLAKPSDLIPELQ--GRFPIRVELQALTTDDFERIL 342 (441)
T ss_pred Cc-eeeec--ceeEE-CCceeEEecCCcCCCChhhccHHHh--CccceEEECCCCCHHHHHHHh
Confidence 74 33332 22334 6788888874 57888888886 699987765 6888888887
No 58
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.59 E-value=5.8e-14 Score=150.81 Aligned_cols=162 Identities=21% Similarity=0.284 Sum_probs=116.2
Q ss_pred eEEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccc---------cccCCcHHHHHHHHHHHHHhhhhcCCceEEEee
Q 019334 75 LILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELES---------ERAGEPGKLIRERYRTASQVVQNQGKMSCLMIN 145 (342)
Q Consensus 75 lglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s---------~~~GEsEr~iR~~F~~A~e~~~~~~~PcILfID 145 (342)
.+++|+||||||||++++++|+.++.++++++.+.+.+ .|.|.....+.+.+..+.. ..+|||||
T Consensus 350 ~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~~~~~g~~~G~~~~~l~~~~~------~~~villD 423 (784)
T PRK10787 350 PILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGV------KNPLFLLD 423 (784)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccchhccCCCCCcHHHHHHHhcCC------CCCEEEEE
Confidence 36889999999999999999999999999998776543 5788887788878866531 23478999
Q ss_pred cccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCcccc--ccCCCCCccEEEeeCCCCCCccCCCCCCCCcceecC
Q 019334 146 DIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWR--ESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQ 223 (342)
Q Consensus 146 EIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~--~~~~~~~V~VIatTNr~~~LdpaLlRpGRfD~~i~v 223 (342)
|||...+.+. + .....|++++|.-++...-..|. ..+ .++|.+|+|||..+ |+|||+. ||+-+-+.
T Consensus 424 Eidk~~~~~~---g-----~~~~aLlevld~~~~~~~~d~~~~~~~d-ls~v~~i~TaN~~~-i~~aLl~--R~~ii~~~ 491 (784)
T PRK10787 424 EIDKMSSDMR---G-----DPASALLEVLDPEQNVAFSDHYLEVDYD-LSDVMFVATSNSMN-IPAPLLD--RMEVIRLS 491 (784)
T ss_pred ChhhcccccC---C-----CHHHHHHHHhccccEEEEeccccccccc-CCceEEEEcCCCCC-CCHHHhc--ceeeeecC
Confidence 9998764321 1 13457888888323332211111 123 57899999999985 9999997 99865444
Q ss_pred -CCHHHHHHHHHHHhhc----------C--CCCHHHHHHHhhcC
Q 019334 224 -PNLEDILNIVHRMYEK----------D--GITKDEVGSIVKTF 254 (342)
Q Consensus 224 -P~~~~R~~Il~~~~~~----------~--~~s~~di~~lvd~f 254 (342)
++.++..+|.+.++.. . .++.+-+..++..|
T Consensus 492 ~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~~y 535 (784)
T PRK10787 492 GYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYY 535 (784)
T ss_pred CCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHHhC
Confidence 7999999999877631 1 24566677777655
No 59
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.58 E-value=5.7e-14 Score=132.10 Aligned_cols=159 Identities=14% Similarity=0.219 Sum_probs=101.7
Q ss_pred eEEEeecCCCCCHHHHHHHHHHHhCCceEEeec------ccccccccCCcHHHHHHHHHHHH--------------Hhhh
Q 019334 75 LILGIWGGKGQGKSFQTELIFQAMGIEPVIMSA------GELESERAGEPGKLIRERYRTAS--------------QVVQ 134 (342)
Q Consensus 75 lglgL~GPPG~GKTllaravA~~~g~~~i~vs~------~eL~s~~~GEsEr~iR~~F~~A~--------------e~~~ 134 (342)
.-++|+||||||||++|+++|+.+|.+++.+++ .+|+..|.|...+.+.+.|-... -...
T Consensus 22 ~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~ 101 (262)
T TIGR02640 22 YPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLTL 101 (262)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHHH
Confidence 456789999999999999999999999999865 45666666554444433332100 0000
Q ss_pred hcCCceEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccc-c--CCCCCccEEEeeCCCC-----C
Q 019334 135 NQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRE-S--DITNRIPIIFTGNDFS-----T 206 (342)
Q Consensus 135 ~~~~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~-~--~~~~~V~VIatTNr~~-----~ 206 (342)
......+|+|||||..-+ .+...|+++++. ..+.+++.-.. + ...++..||+|+|... .
T Consensus 102 A~~~g~~lllDEi~r~~~------------~~q~~Ll~~Le~-~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~~ 168 (262)
T TIGR02640 102 AVREGFTLVYDEFTRSKP------------ETNNVLLSVFEE-GVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVHE 168 (262)
T ss_pred HHHcCCEEEEcchhhCCH------------HHHHHHHHHhcC-CeEEccCCCCCCceEecCCCCEEEEeeCCccccceec
Confidence 012357999999998531 245567777763 23333331000 0 0123567999999763 5
Q ss_pred CccCCCCCCCCcce-ecCCCHHHHHHHHHHHhhcCCCCHHHHHHHh
Q 019334 207 IYAPLIRDGRMEKF-YWQPNLEDILNIVHRMYEKDGITKDEVGSIV 251 (342)
Q Consensus 207 LdpaLlRpGRfD~~-i~vP~~~~R~~Il~~~~~~~~~s~~di~~lv 251 (342)
++++|++ ||=.+ +..|+.++-.+|++.++ +++.+.+++++
T Consensus 169 l~~aL~~--R~~~i~i~~P~~~~e~~Il~~~~---~~~~~~~~~iv 209 (262)
T TIGR02640 169 TQDALLD--RLITIFMDYPDIDTETAILRAKT---DVAEDSAATIV 209 (262)
T ss_pred ccHHHHh--hcEEEECCCCCHHHHHHHHHHhh---CCCHHHHHHHH
Confidence 6888888 78432 22499999999999876 46666666665
No 60
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.58 E-value=1.3e-14 Score=146.61 Aligned_cols=155 Identities=21% Similarity=0.248 Sum_probs=121.4
Q ss_pred CCeEEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccc-cccC-CcHHHHHHHHHHHHHhh-----------------
Q 019334 73 VPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELES-ERAG-EPGKLIRERYRTASQVV----------------- 133 (342)
Q Consensus 73 ~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s-~~~G-EsEr~iR~~F~~A~e~~----------------- 133 (342)
.|..++|+||||||||++|+++|+.++++|+.++++++.. +|+| +.|..+|++|..|...+
T Consensus 49 ~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e 128 (443)
T PRK05201 49 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDVESIIRDLVEIAVKMVREEKREKVREKAEEAAE 128 (443)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3689999999999999999999999999999999999996 7999 77999999999982100
Q ss_pred --------------------------------------------------------------------------------
Q 019334 134 -------------------------------------------------------------------------------- 133 (342)
Q Consensus 134 -------------------------------------------------------------------------------- 133 (342)
T Consensus 129 ~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (443)
T PRK05201 129 ERILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDDKEIEIEVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGP 208 (443)
T ss_pred HHHHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCCcEEEEEecCCCCcccCCCCcchhHHHHHHHHHHHhhCC
Confidence
Q ss_pred ------------------------------------hhcCCceEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCC
Q 019334 134 ------------------------------------QNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNP 177 (342)
Q Consensus 134 ------------------------------------~~~~~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p 177 (342)
...-.--|+||||||+++.+.++.+.+++..-|+.-||-++.|.
T Consensus 209 ~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~ 288 (443)
T PRK05201 209 KKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNGIVFIDEIDKIAARGGSSGPDVSREGVQRDLLPLVEGS 288 (443)
T ss_pred CCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEEEcchhhcccCCCCCCCCCccchhcccccccccc
Confidence 00013459999999999976554445676677889999999974
Q ss_pred CccccCccccccCCCCCccEEEee----CCCCCCccCCCCCCCCcceecC--CCHHHHHHHH
Q 019334 178 TRVSIGQDWRESDITNRIPIIFTG----NDFSTIYAPLIRDGRMEKFYWQ--PNLEDILNIV 233 (342)
Q Consensus 178 ~~v~l~g~~~~~~~~~~V~VIatT----Nr~~~LdpaLlRpGRfD~~i~v--P~~~~R~~Il 233 (342)
.|+.. +...+ +.++..|+++ ..|++|-|+|+ |||-..+.+ .+.++=..||
T Consensus 289 -~v~~k--~~~i~-T~~ILFI~~GAF~~~kp~DlIPEl~--GR~Pi~v~L~~L~~~dL~~IL 344 (443)
T PRK05201 289 -TVSTK--YGMVK-TDHILFIASGAFHVSKPSDLIPELQ--GRFPIRVELDALTEEDFVRIL 344 (443)
T ss_pred -eeeec--ceeEE-CCceeEEecCCcCCCChhhccHHHh--CccceEEECCCCCHHHHHHHh
Confidence 33331 22234 6788888874 67888999997 599987765 6888888888
No 61
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.57 E-value=5.9e-14 Score=132.85 Aligned_cols=183 Identities=11% Similarity=0.138 Sum_probs=113.4
Q ss_pred ccccHHHHHHHHHHHHHHHHHhhcCCCCCeEEEeecCCCCCHHHHHHHHHHHhC-----CceEEeecccccccc------
Q 019334 46 YYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMG-----IEPVIMSAGELESER------ 114 (342)
Q Consensus 46 ~y~~~~f~d~l~~hi~K~~l~~~~~~k~PlglgL~GPPG~GKTllaravA~~~g-----~~~i~vs~~eL~s~~------ 114 (342)
-|-|..|-+.++..-++..+......+.+..++||||||||||++|+++|+++. .+++.+++.++...+
T Consensus 8 ky~P~~~~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~ 87 (337)
T PRK12402 8 KYRPALLEDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFFDQGKKYLVE 87 (337)
T ss_pred hhCCCcHHHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhhhcchhhhhc
Confidence 355666666665555555555433223333588999999999999999999884 456788887764321
Q ss_pred -------cCC-------cHHHHHHHHHHHHHhhhhcCCceEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCcc
Q 019334 115 -------AGE-------PGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRV 180 (342)
Q Consensus 115 -------~GE-------sEr~iR~~F~~A~e~~~~~~~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v 180 (342)
.|+ ....++++...+.......+.+.+|+|||+|..... ....|..+++++
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~------------~~~~L~~~le~~--- 152 (337)
T PRK12402 88 DPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALRED------------AQQALRRIMEQY--- 152 (337)
T ss_pred CcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHH------------HHHHHHHHHHhc---
Confidence 111 122344443333332221244679999999976310 122344444421
Q ss_pred ccCccccccCCCCCccEEEeeCCCCCCccCCCCCCCCccee-cCCCHHHHHHHHHHHhhcCC--CCHHHHHHHhhcCCC
Q 019334 181 SIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFY-WQPNLEDILNIVHRMYEKDG--ITKDEVGSIVKTFPN 256 (342)
Q Consensus 181 ~l~g~~~~~~~~~~V~VIatTNr~~~LdpaLlRpGRfD~~i-~vP~~~~R~~Il~~~~~~~~--~s~~di~~lvd~f~~ 256 (342)
...+.+|+|||.++.+.++|.. |..... ..|+.++...+++.+++..+ ++.+.++.++...+|
T Consensus 153 -----------~~~~~~Il~~~~~~~~~~~L~s--r~~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~~~g 218 (337)
T PRK12402 153 -----------SRTCRFIIATRQPSKLIPPIRS--RCLPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYAGG 218 (337)
T ss_pred -----------cCCCeEEEEeCChhhCchhhcC--CceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 2234566677777888888876 543333 34899999999998887665 567888888876544
No 62
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=2.3e-14 Score=151.86 Aligned_cols=163 Identities=13% Similarity=0.114 Sum_probs=125.5
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccccccCCcHHHHHHHHHHHHHhhhhcCCceEEEeecccccC
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGL 151 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~~~GEsEr~iR~~F~~A~e~~~~~~~PcILfIDEIDAg~ 151 (342)
+.-..+||||+||||||+.++++|.++|++++.+++.||.+.-.+-.|-.+-..|.+|+.. .|||||+-.+|.+.
T Consensus 429 ~~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~-----~pavifl~~~dvl~ 503 (953)
T KOG0736|consen 429 TLNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRARRC-----SPAVLFLRNLDVLG 503 (953)
T ss_pred ccceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHHHHhhc-----CceEEEEeccceee
Confidence 3446799999999999999999999999999999999999999999999999999999744 69999999999976
Q ss_pred CCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCCccCCCCCCCCcceecCCCHHHHHH
Q 019334 152 GRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILN 231 (342)
Q Consensus 152 ~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~~~LdpaLlRpGRfD~~i~vP~~~~R~~ 231 (342)
...++ +.+..-..+...+|++ |.+ .....++.||+||+..+.|+|...+-=+++-.+-.|++++|.+
T Consensus 504 id~dg-ged~rl~~~i~~~ls~-e~~-----------~~~~~~~ivv~t~~s~~~lp~~i~~~f~~ei~~~~lse~qRl~ 570 (953)
T KOG0736|consen 504 IDQDG-GEDARLLKVIRHLLSN-EDF-----------KFSCPPVIVVATTSSIEDLPADIQSLFLHEIEVPALSEEQRLE 570 (953)
T ss_pred ecCCC-chhHHHHHHHHHHHhc-ccc-----------cCCCCceEEEEeccccccCCHHHHHhhhhhccCCCCCHHHHHH
Confidence 33332 1111112233445541 211 1125789999999999999999988666665666799999999
Q ss_pred HHHHHhhc----------------CCCCHHHHHHHhh
Q 019334 232 IVHRMYEK----------------DGITKDEVGSIVK 252 (342)
Q Consensus 232 Il~~~~~~----------------~~~s~~di~~lvd 252 (342)
|||.++.. .+++..|++++++
T Consensus 571 iLq~y~~~~~~n~~v~~k~~a~~t~gfs~~~L~~l~~ 607 (953)
T KOG0736|consen 571 ILQWYLNHLPLNQDVNLKQLARKTSGFSFGDLEALVA 607 (953)
T ss_pred HHHHHHhccccchHHHHHHHHHhcCCCCHHHHHHHhc
Confidence 99986653 3556666666664
No 63
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.55 E-value=1.5e-14 Score=145.42 Aligned_cols=101 Identities=18% Similarity=0.245 Sum_probs=77.5
Q ss_pred eEEEeecCCCCCHHHHHHHHHHHhCCceEEeeccccc-ccccCCcH-HHHHHHHHHHHHhhhhcCCceEEEeecccccCC
Q 019334 75 LILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELE-SERAGEPG-KLIRERYRTASQVVQNQGKMSCLMINDIDAGLG 152 (342)
Q Consensus 75 lglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~-s~~~GEsE-r~iR~~F~~A~e~~~~~~~PcILfIDEIDAg~~ 152 (342)
..++|+||||||||++|+++|+.++++|+.++++++. .+|+|+.. ..++.+++.|....+ +..++||||||||.+..
T Consensus 109 ~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyvG~d~e~~l~~l~~~~~~~~~-~a~~gIi~iDEIdkl~~ 187 (412)
T PRK05342 109 SNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVE-KAQRGIVYIDEIDKIAR 187 (412)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcccchHHHHHHHHHHhccccHH-HcCCcEEEEechhhhcc
Confidence 5799999999999999999999999999999999986 47999864 445666544322222 34689999999999986
Q ss_pred CCCCC--cccchhHHHHHHHHhhcCC
Q 019334 153 RFGNT--QMTVNNQIVVGTLMNLSDN 176 (342)
Q Consensus 153 r~~~t--~~~v~~q~V~~tLl~llD~ 176 (342)
+.++. ..+++...|++.||.+||+
T Consensus 188 ~~~~~~~~~d~s~~~vQ~~LL~~Leg 213 (412)
T PRK05342 188 KSENPSITRDVSGEGVQQALLKILEG 213 (412)
T ss_pred ccCCCCcCCCcccHHHHHHHHHHHhc
Confidence 64332 2234444588899999985
No 64
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.52 E-value=3.5e-13 Score=134.30 Aligned_cols=154 Identities=20% Similarity=0.226 Sum_probs=105.4
Q ss_pred HHHHHHhhcCCCCCeEEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccccccCCcHHHHHHHHHHHHHhhhhcCCce
Q 019334 61 VKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMS 140 (342)
Q Consensus 61 ~K~~l~~~~~~k~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~~~GEsEr~iR~~F~~A~e~~~~~~~Pc 140 (342)
+++++. -..+..++||||||||||++|+++|+.++..++.+++.. .+.+.+|+.+..+..... .++.+
T Consensus 27 L~~~i~----~~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~-------~~~~~ir~ii~~~~~~~~-~g~~~ 94 (413)
T PRK13342 27 LRRMIE----AGRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVT-------SGVKDLREVIEEARQRRS-AGRRT 94 (413)
T ss_pred HHHHHH----cCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccc-------ccHHHHHHHHHHHHHhhh-cCCce
Confidence 455554 233447888999999999999999999999999998763 235678888888765432 46789
Q ss_pred EEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEee--CCCCCCccCCCCCCCCc
Q 019334 141 CLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTG--NDFSTIYAPLIRDGRME 218 (342)
Q Consensus 141 ILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatT--Nr~~~LdpaLlRpGRfD 218 (342)
||||||||.... .....|+..+. ...+.+|++| |....++++|+. |+.
T Consensus 95 vL~IDEi~~l~~------------~~q~~LL~~le----------------~~~iilI~att~n~~~~l~~aL~S--R~~ 144 (413)
T PRK13342 95 ILFIDEIHRFNK------------AQQDALLPHVE----------------DGTITLIGATTENPSFEVNPALLS--RAQ 144 (413)
T ss_pred EEEEechhhhCH------------HHHHHHHHHhh----------------cCcEEEEEeCCCChhhhccHHHhc--cce
Confidence 999999997631 01224454433 1235555554 444589999998 774
Q ss_pred ceec-CCCHHHHHHHHHHHhhc----C-CCCHHHHHHHhhcCCC
Q 019334 219 KFYW-QPNLEDILNIVHRMYEK----D-GITKDEVGSIVKTFPN 256 (342)
Q Consensus 219 ~~i~-vP~~~~R~~Il~~~~~~----~-~~s~~di~~lvd~f~~ 256 (342)
.+.+ .|+.++...+|+..+.. . .++.+.++.++....|
T Consensus 145 ~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~G 188 (413)
T PRK13342 145 VFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANG 188 (413)
T ss_pred eeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCC
Confidence 4333 37889999999876653 1 5677666766654444
No 65
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.51 E-value=5.3e-14 Score=141.63 Aligned_cols=101 Identities=18% Similarity=0.254 Sum_probs=76.9
Q ss_pred eEEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccc-cccCCc-HHHHHHHHHHHHHhhhhcCCceEEEeecccccCC
Q 019334 75 LILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELES-ERAGEP-GKLIRERYRTASQVVQNQGKMSCLMINDIDAGLG 152 (342)
Q Consensus 75 lglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s-~~~GEs-Er~iR~~F~~A~e~~~~~~~PcILfIDEIDAg~~ 152 (342)
..++|+||||||||++|+++|+.++++|+.++++.|.. +|+|+. +..+...++.+.-... +..|+||||||||+..+
T Consensus 117 ~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gyvG~d~e~~L~~~~~~~~~~l~-~a~~gIV~lDEIdkl~~ 195 (413)
T TIGR00382 117 SNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVE-KAQKGIIYIDEIDKISR 195 (413)
T ss_pred ceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhccccccccccHHHHHHHHHHhCcccHH-hcccceEEecccchhch
Confidence 47999999999999999999999999999999998763 699996 5556666544321111 34689999999999887
Q ss_pred CCCCC--cccchhHHHHHHHHhhcCC
Q 019334 153 RFGNT--QMTVNNQIVVGTLMNLSDN 176 (342)
Q Consensus 153 r~~~t--~~~v~~q~V~~tLl~llD~ 176 (342)
+.++. ..+++...|++.||.+|++
T Consensus 196 ~~~~~s~~~dvsg~~vq~~LL~iLeG 221 (413)
T TIGR00382 196 KSENPSITRDVSGEGVQQALLKIIEG 221 (413)
T ss_pred hhccccccccccchhHHHHHHHHhhc
Confidence 65422 2234444578889999985
No 66
>PRK06893 DNA replication initiation factor; Validated
Probab=99.49 E-value=1.6e-13 Score=126.51 Aligned_cols=145 Identities=14% Similarity=0.185 Sum_probs=90.2
Q ss_pred eEEEeecCCCCCHHHHHHHHHHHh-----CCceEEeecccccccccCCcHHHHHHHHHHHHHhhhhcCCceEEEeecccc
Q 019334 75 LILGIWGGKGQGKSFQTELIFQAM-----GIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDA 149 (342)
Q Consensus 75 lglgL~GPPG~GKTllaravA~~~-----g~~~i~vs~~eL~s~~~GEsEr~iR~~F~~A~e~~~~~~~PcILfIDEIDA 149 (342)
..++||||||||||.++.|+|+++ .+.++.++..+.. ..+.++.. .++.+|+|||||.
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~~~----------~~~~~~~~-------~~~dlLilDDi~~ 102 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQYF----------SPAVLENL-------EQQDLVCLDDLQA 102 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhhhh----------hHHHHhhc-------ccCCEEEEeChhh
Confidence 358999999999999999999886 4444444322111 11222222 2368999999999
Q ss_pred cCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCCc---cCCCCCCCCcceec--CC
Q 019334 150 GLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIY---APLIRDGRMEKFYW--QP 224 (342)
Q Consensus 150 g~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~~~Ld---paLlRpGRfD~~i~--vP 224 (342)
+.+... .+ ..|.++++. ..+. ...+.|+.+++.|+.++ |.|....+....+. .|
T Consensus 103 ~~~~~~-------~~---~~l~~l~n~----------~~~~-~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~p 161 (229)
T PRK06893 103 VIGNEE-------WE---LAIFDLFNR----------IKEQ-GKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDL 161 (229)
T ss_pred hcCChH-------HH---HHHHHHHHH----------HHHc-CCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCC
Confidence 875321 11 134444441 0011 12233344445576665 78888555555554 39
Q ss_pred CHHHHHHHHHHHhhcCC--CCHHHHHHHhhcCCCC
Q 019334 225 NLEDILNIVHRMYEKDG--ITKDEVGSIVKTFPNQ 257 (342)
Q Consensus 225 ~~~~R~~Il~~~~~~~~--~s~~di~~lvd~f~~~ 257 (342)
+.++|.+||+......+ ++.+-+.-|+..+++.
T Consensus 162 d~e~~~~iL~~~a~~~~l~l~~~v~~~L~~~~~~d 196 (229)
T PRK06893 162 TDEQKIIVLQRNAYQRGIELSDEVANFLLKRLDRD 196 (229)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCC
Confidence 99999999998776554 6778788888777663
No 67
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.49 E-value=1.9e-13 Score=135.19 Aligned_cols=181 Identities=20% Similarity=0.223 Sum_probs=114.1
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCeEEEeecCCCCCHHHHHHHHHHHh-----CCceEEeecccccccccCCcHHHHHHHHH
Q 019334 53 MASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAM-----GIEPVIMSAGELESERAGEPGKLIRERYR 127 (342)
Q Consensus 53 ~d~l~~hi~K~~l~~~~~~k~PlglgL~GPPG~GKTllaravA~~~-----g~~~i~vs~~eL~s~~~GEsEr~iR~~F~ 127 (342)
....+...++.+.. .++ ..+..++||||||+|||++++|+++++ +..++.+++.++.+.+...-...-.+.|.
T Consensus 117 ~n~~a~~~~~~~~~-~~~-~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~ 194 (405)
T TIGR00362 117 SNRLAHAAALAVAE-NPG-KAYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRNNKMEEFK 194 (405)
T ss_pred cHHHHHHHHHHHHh-CcC-ccCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHcCCHHHHH
Confidence 35567777777776 333 344678999999999999999999887 78899999988776443211100111232
Q ss_pred HHHHhhhhcCCceEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCC-CCC
Q 019334 128 TASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGND-FST 206 (342)
Q Consensus 128 ~A~e~~~~~~~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr-~~~ 206 (342)
+.. ..+.+|+|||||.+.++.. .+ ..|+.+++. .+ ..+.++|.|+|+ |+.
T Consensus 195 ~~~------~~~dlLiiDDi~~l~~~~~-------~~---~~l~~~~n~--------~~-----~~~~~iiits~~~p~~ 245 (405)
T TIGR00362 195 EKY------RSVDLLLIDDIQFLAGKER-------TQ---EEFFHTFNA--------LH-----ENGKQIVLTSDRPPKE 245 (405)
T ss_pred HHH------HhCCEEEEehhhhhcCCHH-------HH---HHHHHHHHH--------HH-----HCCCCEEEecCCCHHH
Confidence 221 1368999999999865321 11 233333331 00 122446666664 444
Q ss_pred ---CccCCCCCCCCcc--eec--CCCHHHHHHHHHHHhhcCC--CCHHHHHHHhhcCCCCccchHHHHH
Q 019334 207 ---IYAPLIRDGRMEK--FYW--QPNLEDILNIVHRMYEKDG--ITKDEVGSIVKTFPNQALDFYGALR 266 (342)
Q Consensus 207 ---LdpaLlRpGRfD~--~i~--vP~~~~R~~Il~~~~~~~~--~s~~di~~lvd~f~~~~~df~gAlr 266 (342)
+++.|+. ||.. .+. .|+.++|.+||+..++..+ ++.+-++.++..+.+.-=+..||+.
T Consensus 246 l~~l~~~l~S--Rl~~g~~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~~~r~l~~~l~ 312 (405)
T TIGR00362 246 LPGLEERLRS--RFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVLEFIAKNIRSNVRELEGALN 312 (405)
T ss_pred Hhhhhhhhhh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHH
Confidence 4566664 8875 233 4999999999998887654 6777778888776654333445544
No 68
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.48 E-value=2.8e-13 Score=136.21 Aligned_cols=180 Identities=19% Similarity=0.223 Sum_probs=115.6
Q ss_pred HHHHHHHHHHHHHhhcCCCCCeEEEeecCCCCCHHHHHHHHHHHh-----CCceEEeecccccccccCCcHHHHHHHHHH
Q 019334 54 ASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAM-----GIEPVIMSAGELESERAGEPGKLIRERYRT 128 (342)
Q Consensus 54 d~l~~hi~K~~l~~~~~~k~PlglgL~GPPG~GKTllaravA~~~-----g~~~i~vs~~eL~s~~~GEsEr~iR~~F~~ 128 (342)
+..+...++.+.. .++ .....++||||||||||.+++|+|+++ ++.++.+++.++.+.+...-...-.+.|.+
T Consensus 130 n~~a~~~~~~~~~-~~~-~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~ 207 (450)
T PRK00149 130 NRLAHAAALAVAE-NPG-KAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKE 207 (450)
T ss_pred cHHHHHHHHHHHh-CcC-ccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHcCcHHHHHH
Confidence 4457777777765 333 233568999999999999999999987 677999999988765543322111223332
Q ss_pred HHHhhhhcCCceEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCC-CC-
Q 019334 129 ASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDF-ST- 206 (342)
Q Consensus 129 A~e~~~~~~~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~-~~- 206 (342)
.. .++.+|+|||||.+.++.. .+ ..|+.+++. .. ..+.+||.|+|++ +.
T Consensus 208 ~~------~~~dlLiiDDi~~l~~~~~-------~~---~~l~~~~n~---------l~----~~~~~iiits~~~p~~l 258 (450)
T PRK00149 208 KY------RSVDVLLIDDIQFLAGKER-------TQ---EEFFHTFNA---------LH----EAGKQIVLTSDRPPKEL 258 (450)
T ss_pred HH------hcCCEEEEehhhhhcCCHH-------HH---HHHHHHHHH---------HH----HCCCcEEEECCCCHHHH
Confidence 21 2478999999999865321 11 223333331 00 1223466666654 33
Q ss_pred --CccCCCCCCCCcc--eec--CCCHHHHHHHHHHHhhcCC--CCHHHHHHHhhcCCCCccchHHHHH
Q 019334 207 --IYAPLIRDGRMEK--FYW--QPNLEDILNIVHRMYEKDG--ITKDEVGSIVKTFPNQALDFYGALR 266 (342)
Q Consensus 207 --LdpaLlRpGRfD~--~i~--vP~~~~R~~Il~~~~~~~~--~s~~di~~lvd~f~~~~~df~gAlr 266 (342)
+++.|+- ||.. .+. .|+.++|..||+......+ ++.+-++.++..+.+.-=...|||.
T Consensus 259 ~~l~~~l~S--Rl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~~~R~l~~~l~ 324 (450)
T PRK00149 259 PGLEERLRS--RFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEVLEFIAKNITSNVRELEGALN 324 (450)
T ss_pred HHHHHHHHh--HhcCCeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHcCcCCCHHHHHHHHH
Confidence 5666664 8875 232 4999999999998887654 6888888888877664333445554
No 69
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.48 E-value=6.4e-13 Score=135.66 Aligned_cols=147 Identities=14% Similarity=0.258 Sum_probs=99.0
Q ss_pred CCCCeEEEeecCCCCCHHHHHHHHHHHhCC------------------------ceEEeecccccccccCCcHHHHHHHH
Q 019334 71 VKVPLILGIWGGKGQGKSFQTELIFQAMGI------------------------EPVIMSAGELESERAGEPGKLIRERY 126 (342)
Q Consensus 71 ~k~PlglgL~GPPG~GKTllaravA~~~g~------------------------~~i~vs~~eL~s~~~GEsEr~iR~~F 126 (342)
-+.|..+++|||||||||++|+++|+.+++ .++.++++. ..+-..+|++.
T Consensus 33 ~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el~aa~------~~gid~iR~i~ 106 (472)
T PRK14962 33 NSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIELDAAS------NRGIDEIRKIR 106 (472)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEEEeCcc------cCCHHHHHHHH
Confidence 467788999999999999999999999876 345554431 12235677766
Q ss_pred HHHHHhhhhcCCceEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCC
Q 019334 127 RTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFST 206 (342)
Q Consensus 127 ~~A~e~~~~~~~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~~~ 206 (342)
..+.. ....+...||||||+|.... .....|+..+++| ...+.+|.+||.++.
T Consensus 107 ~~~~~-~p~~~~~kVvIIDE~h~Lt~------------~a~~~LLk~LE~p--------------~~~vv~Ilattn~~k 159 (472)
T PRK14962 107 DAVGY-RPMEGKYKVYIIDEVHMLTK------------EAFNALLKTLEEP--------------PSHVVFVLATTNLEK 159 (472)
T ss_pred HHHhh-ChhcCCeEEEEEEChHHhHH------------HHHHHHHHHHHhC--------------CCcEEEEEEeCChHh
Confidence 55542 22235678999999998731 1223456555532 235666667777889
Q ss_pred CccCCCCCCCCcceec-CCCHHHHHHHHHHHhhcCC--CCHHHHHHHhh
Q 019334 207 IYAPLIRDGRMEKFYW-QPNLEDILNIVHRMYEKDG--ITKDEVGSIVK 252 (342)
Q Consensus 207 LdpaLlRpGRfD~~i~-vP~~~~R~~Il~~~~~~~~--~s~~di~~lvd 252 (342)
|+++|+. |+-.+-+ .|+.++...+++...+..+ ++.+.+..++.
T Consensus 160 l~~~L~S--R~~vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~ 206 (472)
T PRK14962 160 VPPTIIS--RCQVIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAK 206 (472)
T ss_pred hhHHHhc--CcEEEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 9999987 5544333 3788998999987776554 56655666654
No 70
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=2.2e-13 Score=143.65 Aligned_cols=152 Identities=18% Similarity=0.201 Sum_probs=118.7
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHhC----CceEEeecccccccccCCcHHHHHHHHHHHHHhhhhcCCceEEEeecc
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQAMG----IEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDI 147 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~~g----~~~i~vs~~eL~s~~~GEsEr~iR~~F~~A~e~~~~~~~PcILfIDEI 147 (342)
-.+--++|+||||||||.|+++++++.. +.+..+++++|-.+-.-.--+.++.+|.+|..+ +|+||.+|++
T Consensus 429 ~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vfse~~~~-----~PSiIvLDdl 503 (952)
T KOG0735|consen 429 FRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLEKIQKFLNNVFSEALWY-----APSIIVLDDL 503 (952)
T ss_pred cccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHHHHHHHHHHHHHHHHhh-----CCcEEEEcch
Confidence 3445789999999999999999998765 567778988887655555567889999999865 5999999999
Q ss_pred cccCCCCC--CCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCCccCCCCCCCCcceecC--
Q 019334 148 DAGLGRFG--NTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQ-- 223 (342)
Q Consensus 148 DAg~~r~~--~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~~~LdpaLlRpGRfD~~i~v-- 223 (342)
|++++..+ ++|.++..+++..+|-...+ .|.. ..+.+-||||.+-..+|.|-|-=|++|+..+-+
T Consensus 504 d~l~~~s~~e~~q~~~~~~rla~flnqvi~---------~y~~--~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~a 572 (952)
T KOG0735|consen 504 DCLASASSNENGQDGVVSERLAAFLNQVIK---------IYLK--RNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPA 572 (952)
T ss_pred hhhhccCcccCCcchHHHHHHHHHHHHHHH---------HHHc--cCcEEEEEEechhhhhcChhhcCccceEEEEecCC
Confidence 99887433 56656666666666644433 1221 245689999999999999999999999987654
Q ss_pred CCHHHHHHHHHHHhhc
Q 019334 224 PNLEDILNIVHRMYEK 239 (342)
Q Consensus 224 P~~~~R~~Il~~~~~~ 239 (342)
|+..+|.+||+..+++
T Consensus 573 p~~~~R~~IL~~~~s~ 588 (952)
T KOG0735|consen 573 PAVTRRKEILTTIFSK 588 (952)
T ss_pred cchhHHHHHHHHHHHh
Confidence 8999999999876654
No 71
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.47 E-value=7.1e-13 Score=129.00 Aligned_cols=187 Identities=15% Similarity=0.230 Sum_probs=112.8
Q ss_pred hhcccccccHHHHHHH--HHHHHHHHHHhhcCCCCCeEEEeecCCCCCHHHHHHHHHHHh-----CCceEEeecccc---
Q 019334 41 YLQGDYYIAPVFMASL--LCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAM-----GIEPVIMSAGEL--- 110 (342)
Q Consensus 41 ~~~~~~y~~~~f~d~l--~~hi~K~~l~~~~~~k~PlglgL~GPPG~GKTllaravA~~~-----g~~~i~vs~~eL--- 110 (342)
+.....|+|+.|..+- ...+. .++.....-..|..++||||||||||++++.+++++ ++.++.+++.+.
T Consensus 21 ~~l~~~~~P~~l~~Re~e~~~l~-~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~ 99 (394)
T PRK00411 21 EVLEPDYVPENLPHREEQIEELA-FALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTR 99 (394)
T ss_pred hhCCCCCcCCCCCCHHHHHHHHH-HHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCH
Confidence 3445667888775443 33333 333323223456678999999999999999999887 688889988543
Q ss_pred -------cccccCC----cHHHHHHHHHHHHHhhhhcCCceEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCc
Q 019334 111 -------ESERAGE----PGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTR 179 (342)
Q Consensus 111 -------~s~~~GE----sEr~iR~~F~~A~e~~~~~~~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~ 179 (342)
.....|+ ......+.|+...+.....++++||+|||+|.+..+.+ .+ +..+|+..++.
T Consensus 100 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~-------~~-~l~~l~~~~~~--- 168 (394)
T PRK00411 100 YAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEG-------ND-VLYSLLRAHEE--- 168 (394)
T ss_pred HHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCC-------ch-HHHHHHHhhhc---
Confidence 2222231 11123344444444444357899999999999872211 12 34455544331
Q ss_pred cccCccccccCCCCCccEEEeeCCCC---CCccCCCCCCCCc-cee-cC-CCHHHHHHHHHHHhhc----CCCCHHHHHH
Q 019334 180 VSIGQDWRESDITNRIPIIFTGNDFS---TIYAPLIRDGRME-KFY-WQ-PNLEDILNIVHRMYEK----DGITKDEVGS 249 (342)
Q Consensus 180 v~l~g~~~~~~~~~~V~VIatTNr~~---~LdpaLlRpGRfD-~~i-~v-P~~~~R~~Il~~~~~~----~~~s~~di~~ 249 (342)
.+ ..+|.||++||..+ .++|.+.. ||. +.+ +. ++.++..+|++..++. ..++.+-++.
T Consensus 169 ---------~~-~~~v~vI~i~~~~~~~~~l~~~~~s--~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~ 236 (394)
T PRK00411 169 ---------YP-GARIGVIGISSDLTFLYILDPRVKS--VFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDL 236 (394)
T ss_pred ---------cC-CCeEEEEEEECCcchhhhcCHHHHh--cCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHH
Confidence 11 24788999999875 35555543 453 223 33 5899999999876653 2355554544
Q ss_pred Hh
Q 019334 250 IV 251 (342)
Q Consensus 250 lv 251 (342)
+.
T Consensus 237 i~ 238 (394)
T PRK00411 237 IA 238 (394)
T ss_pred HH
Confidence 43
No 72
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.47 E-value=1.1e-12 Score=126.31 Aligned_cols=170 Identities=16% Similarity=0.228 Sum_probs=104.4
Q ss_pred cccccccHHHHHHHHHH-HHHHHHHhhcCCCCCeEEEeecCCCCCHHHHHHHHHHHhC---------CceEEeecccccc
Q 019334 43 QGDYYIAPVFMASLLCH-IVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMG---------IEPVIMSAGELES 112 (342)
Q Consensus 43 ~~~~y~~~~f~d~l~~h-i~K~~l~~~~~~k~PlglgL~GPPG~GKTllaravA~~~g---------~~~i~vs~~eL~s 112 (342)
+..-|+|+.|..+-.+. -+..++.....-..|..++||||||||||++++++++++. +.++.+++.+.-+
T Consensus 8 l~~~~~p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~ 87 (365)
T TIGR02928 8 LEPDYVPDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDT 87 (365)
T ss_pred CCCCCCCCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCC
Confidence 45667777765444211 2223333222235677899999999999999999998753 5677788754322
Q ss_pred ----------ccc--CC-------c-HHHHHHHHHHHHHhhhhcCCceEEEeecccccCCCCCCCcccchhHHHHHHHHh
Q 019334 113 ----------ERA--GE-------P-GKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMN 172 (342)
Q Consensus 113 ----------~~~--GE-------s-Er~iR~~F~~A~e~~~~~~~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~ 172 (342)
... |. + ++.++.+++.. ...++|+||+|||+|.+.+. + +.+..+|+.
T Consensus 88 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l----~~~~~~~vlvIDE~d~L~~~-~--------~~~L~~l~~ 154 (365)
T TIGR02928 88 LYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKEL----NERGDSLIIVLDEIDYLVGD-D--------DDLLYQLSR 154 (365)
T ss_pred HHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHH----HhcCCeEEEEECchhhhccC-C--------cHHHHhHhc
Confidence 111 21 2 23334444332 22467999999999998721 1 123334554
Q ss_pred hcCCCCccccCccccccCCCCCccEEEeeCCCC---CCccCCCCCCCCc-ceec-C-CCHHHHHHHHHHHhh
Q 019334 173 LSDNPTRVSIGQDWRESDITNRIPIIFTGNDFS---TIYAPLIRDGRME-KFYW-Q-PNLEDILNIVHRMYE 238 (342)
Q Consensus 173 llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~~---~LdpaLlRpGRfD-~~i~-v-P~~~~R~~Il~~~~~ 238 (342)
+.+. . .....+|.+|++||+++ .|++.+.+ ||. +.+. . ++.++..+|++..+.
T Consensus 155 ~~~~----------~-~~~~~~v~lI~i~n~~~~~~~l~~~~~s--~~~~~~i~f~p~~~~e~~~il~~r~~ 213 (365)
T TIGR02928 155 ARSN----------G-DLDNAKVGVIGISNDLKFRENLDPRVKS--SLCEEEIIFPPYDAEELRDILENRAE 213 (365)
T ss_pred cccc----------c-CCCCCeEEEEEEECCcchHhhcCHHHhc--cCCcceeeeCCCCHHHHHHHHHHHHH
Confidence 3221 1 11136789999999987 47777765 664 3333 3 699999999987765
No 73
>PLN03025 replication factor C subunit; Provisional
Probab=99.46 E-value=1.2e-12 Score=125.84 Aligned_cols=175 Identities=14% Similarity=0.158 Sum_probs=110.0
Q ss_pred cccHHHHHHHHHHHHHHHHHhhc-CCCCCeEEEeecCCCCCHHHHHHHHHHHhC-----CceEEeecccccccccCCcHH
Q 019334 47 YIAPVFMASLLCHIVKNYIAHLL-NVKVPLILGIWGGKGQGKSFQTELIFQAMG-----IEPVIMSAGELESERAGEPGK 120 (342)
Q Consensus 47 y~~~~f~d~l~~hi~K~~l~~~~-~~k~PlglgL~GPPG~GKTllaravA~~~g-----~~~i~vs~~eL~s~~~GEsEr 120 (342)
|-|..|-|.++..-+...+.... +.+.| .++||||||||||++|+++|+++. ..++.+++++..+ -.
T Consensus 7 yrP~~l~~~~g~~~~~~~L~~~~~~~~~~-~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~~~------~~ 79 (319)
T PLN03025 7 YRPTKLDDIVGNEDAVSRLQVIARDGNMP-NLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDDRG------ID 79 (319)
T ss_pred cCCCCHHHhcCcHHHHHHHHHHHhcCCCc-eEEEECCCCCCHHHHHHHHHHHHhcccCccceeeeccccccc------HH
Confidence 45556666655444334443321 22445 478999999999999999999972 3466666665432 12
Q ss_pred HHHHHHHHHHHhh--hhcCCceEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEE
Q 019334 121 LIRERYRTASQVV--QNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPII 198 (342)
Q Consensus 121 ~iR~~F~~A~e~~--~~~~~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VI 198 (342)
.+|+......+.. ...+++.|++|||+|..... .| ..|+..+..| ...+.+|
T Consensus 80 ~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~~---------aq---~aL~~~lE~~--------------~~~t~~i 133 (319)
T PLN03025 80 VVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSG---------AQ---QALRRTMEIY--------------SNTTRFA 133 (319)
T ss_pred HHHHHHHHHHhccccCCCCCeEEEEEechhhcCHH---------HH---HHHHHHHhcc--------------cCCceEE
Confidence 4555543322210 00245789999999997421 12 2344333311 2345577
Q ss_pred EeeCCCCCCccCCCCCCCCcceec-CCCHHHHHHHHHHHhhcCC--CCHHHHHHHhhcCCC
Q 019334 199 FTGNDFSTIYAPLIRDGRMEKFYW-QPNLEDILNIVHRMYEKDG--ITKDEVGSIVKTFPN 256 (342)
Q Consensus 199 atTNr~~~LdpaLlRpGRfD~~i~-vP~~~~R~~Il~~~~~~~~--~s~~di~~lvd~f~~ 256 (342)
.+||.++.+.++|+- |...+-+ .|+.++...+|+.+.+..+ ++.+.++.++....|
T Consensus 134 l~~n~~~~i~~~L~S--Rc~~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~g 192 (319)
T PLN03025 134 LACNTSSKIIEPIQS--RCAIVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADG 192 (319)
T ss_pred EEeCCccccchhHHH--hhhcccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 889999999999886 5543323 3789999999998888776 567888888876554
No 74
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.46 E-value=7e-13 Score=124.65 Aligned_cols=141 Identities=16% Similarity=0.150 Sum_probs=82.2
Q ss_pred CCeEEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccccccCCcHHHHHHHHHHHHHhhhhcCCceEEEeecccccCC
Q 019334 73 VPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLG 152 (342)
Q Consensus 73 ~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~~~GEsEr~iR~~F~~A~e~~~~~~~PcILfIDEIDAg~~ 152 (342)
..--+++|||||||||++|+.||+++|++|...|++.+.. .+-+..++.. -+...|||||||...-
T Consensus 49 ~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k------~~dl~~il~~-------l~~~~ILFIDEIHRln- 114 (233)
T PF05496_consen 49 ALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEK------AGDLAAILTN-------LKEGDILFIDEIHRLN- 114 (233)
T ss_dssp ---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--S------CHHHHHHHHT---------TT-EEEECTCCC---
T ss_pred CcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhh------HHHHHHHHHh-------cCCCcEEEEechhhcc-
Confidence 4457999999999999999999999999999999986542 2223333322 2357899999998763
Q ss_pred CCCCCcccchhHHHHHHHHhhcCCCCc-cccCccccc----cCCCCCccEEEeeCCCCCCccCCCCCCCCcceecC--CC
Q 019334 153 RFGNTQMTVNNQIVVGTLMNLSDNPTR-VSIGQDWRE----SDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQ--PN 225 (342)
Q Consensus 153 r~~~t~~~v~~q~V~~tLl~llD~p~~-v~l~g~~~~----~~~~~~V~VIatTNr~~~LdpaLlRpGRfD~~i~v--P~ 225 (342)
..+...|+..|.+-+. +-++..... -+ .++--+|+||+|...|.+||+= ||--.... =+
T Consensus 115 -----------k~~qe~LlpamEd~~idiiiG~g~~ar~~~~~-l~~FTligATTr~g~ls~pLrd--RFgi~~~l~~Y~ 180 (233)
T PF05496_consen 115 -----------KAQQEILLPAMEDGKIDIIIGKGPNARSIRIN-LPPFTLIGATTRAGLLSSPLRD--RFGIVLRLEFYS 180 (233)
T ss_dssp -----------HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE-----EEEEEESSGCCTSHCCCT--TSSEEEE----T
T ss_pred -----------HHHHHHHHHHhccCeEEEEeccccccceeecc-CCCceEeeeeccccccchhHHh--hcceecchhcCC
Confidence 2234456655554221 222221111 01 2456689999999999999986 88654322 35
Q ss_pred HHHHHHHHHHHhhcCC
Q 019334 226 LEDILNIVHRMYEKDG 241 (342)
Q Consensus 226 ~~~R~~Il~~~~~~~~ 241 (342)
.++-..|++...+..+
T Consensus 181 ~~el~~Iv~r~a~~l~ 196 (233)
T PF05496_consen 181 EEELAKIVKRSARILN 196 (233)
T ss_dssp HHHHHHHHHHCCHCTT
T ss_pred HHHHHHHHHHHHHHhC
Confidence 5666666654444333
No 75
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.44 E-value=2.7e-14 Score=119.91 Aligned_cols=120 Identities=18% Similarity=0.156 Sum_probs=75.3
Q ss_pred EEEeecCCCCCHHHHHHHHHHHhCCceEEeeccc------cccccc---CCcHHHHHHHHHHHHHhhhhcCCceEEEeec
Q 019334 76 ILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGE------LESERA---GEPGKLIRERYRTASQVVQNQGKMSCLMIND 146 (342)
Q Consensus 76 glgL~GPPG~GKTllaravA~~~g~~~i~vs~~e------L~s~~~---GEsEr~iR~~F~~A~e~~~~~~~PcILfIDE 146 (342)
.|+|+||||||||.+|+.+|+.++.+++.++.+. |+..|. |..+-. -..+-+|. .+++|++|||
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~-~~~l~~a~------~~~~il~lDE 73 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFK-DGPLVRAM------RKGGILVLDE 73 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEE-E-CCCTTH------HEEEEEEESS
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeecccccccc-cccccccc------cceeEEEECC
Confidence 4799999999999999999999999999888754 333332 111100 00011111 2599999999
Q ss_pred ccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCC------CccEEEeeCCCC----CCccCCCCCCC
Q 019334 147 IDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITN------RIPIIFTGNDFS----TIYAPLIRDGR 216 (342)
Q Consensus 147 IDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~------~V~VIatTNr~~----~LdpaLlRpGR 216 (342)
|+..- ..|...|++++++-...-..+.+.... .. +..||+|+|..+ .|++||+| |
T Consensus 74 in~a~------------~~v~~~L~~ll~~~~~~~~~~~~~~~~-~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~--R 138 (139)
T PF07728_consen 74 INRAP------------PEVLESLLSLLEERRIQLPEGGEEIKE-PNNDLASPNFRIIATMNPRDKGRKELSPALLD--R 138 (139)
T ss_dssp CGG--------------HHHHHTTHHHHSSSEEEE-TSSSEEE---TT------EEEEEEESSST--TTTTCHHHHT--T
T ss_pred cccCC------------HHHHHHHHHHHhhCcccccCCCcEEec-CcccccccceEEEEEEcCCCCCcCcCCHHHHh--h
Confidence 99863 236777888888532221122111111 11 388999999999 99999998 6
Q ss_pred C
Q 019334 217 M 217 (342)
Q Consensus 217 f 217 (342)
|
T Consensus 139 f 139 (139)
T PF07728_consen 139 F 139 (139)
T ss_dssp -
T ss_pred C
Confidence 6
No 76
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.43 E-value=1.4e-12 Score=104.66 Aligned_cols=129 Identities=19% Similarity=0.157 Sum_probs=81.3
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHh---CCceEEeecccccccccCCcHHHHHHHHHHHHHhhhhcCCceEEEeeccc
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQAM---GIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDID 148 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~~---g~~~i~vs~~eL~s~~~GEsEr~iR~~F~~A~e~~~~~~~PcILfIDEID 148 (342)
+....++|+||||||||+++++++..+ +.+++.++..+....+......... .+...... .....+++|+|||+|
T Consensus 17 ~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~lilDe~~ 94 (151)
T cd00009 17 PPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHF-LVRLLFEL-AEKAKPGVLFIDEID 94 (151)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhh-hHhHHHHh-hccCCCeEEEEeChh
Confidence 456789999999999999999999999 9999999998877654432221100 00011111 114569999999999
Q ss_pred ccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCC--CCccCCCCCCCCcceecCC
Q 019334 149 AGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFS--TIYAPLIRDGRMEKFYWQP 224 (342)
Q Consensus 149 Ag~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~~--~LdpaLlRpGRfD~~i~vP 224 (342)
..... ....++..+..- . .+. ....++.||++||... .+++.+.. ||+..+.+|
T Consensus 95 ~~~~~------------~~~~~~~~i~~~---~---~~~--~~~~~~~ii~~~~~~~~~~~~~~~~~--r~~~~i~~~ 150 (151)
T cd00009 95 SLSRG------------AQNALLRVLETL---N---DLR--IDRENVRVIGATNRPLLGDLDRALYD--RLDIRIVIP 150 (151)
T ss_pred hhhHH------------HHHHHHHHHHhc---C---cee--ccCCCeEEEEecCccccCCcChhHHh--hhccEeecC
Confidence 87210 111222222210 0 010 1136799999999988 56666654 888766654
No 77
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.40 E-value=6e-12 Score=129.02 Aligned_cols=167 Identities=16% Similarity=0.255 Sum_probs=105.0
Q ss_pred cccHHHHHHHHHH-H---HHHHHHhhcCCCCCeEEEeecCCCCCHHHHHHHHHHHhCCc---------------------
Q 019334 47 YIAPVFMASLLCH-I---VKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIE--------------------- 101 (342)
Q Consensus 47 y~~~~f~d~l~~h-i---~K~~l~~~~~~k~PlglgL~GPPG~GKTllaravA~~~g~~--------------------- 101 (342)
|-|..|-|.++.. + +++++. .-+.|..+++|||||||||++|+++|+.+++.
T Consensus 12 yRP~~f~dvVGQe~iv~~L~~~i~---~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i~~g~ 88 (484)
T PRK14956 12 YRPQFFRDVIHQDLAIGALQNALK---SGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEITKGI 88 (484)
T ss_pred hCCCCHHHHhChHHHHHHHHHHHH---cCCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHHHccC
Confidence 3444555554433 2 333333 33677789999999999999999999999873
Q ss_pred ---eEEeecccccccccCCcHHHHHHHHHHHHHhhhhcCCceEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCC
Q 019334 102 ---PVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPT 178 (342)
Q Consensus 102 ---~i~vs~~eL~s~~~GEsEr~iR~~F~~A~e~~~~~~~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~ 178 (342)
++.++++. ..+-..||++.+.+... ...++..|+||||+|.... . ....||..+.
T Consensus 89 ~~dviEIdaas------~~gVd~IReL~e~l~~~-p~~g~~KV~IIDEah~Ls~-----------~-A~NALLKtLE--- 146 (484)
T PRK14956 89 SSDVLEIDAAS------NRGIENIRELRDNVKFA-PMGGKYKVYIIDEVHMLTD-----------Q-SFNALLKTLE--- 146 (484)
T ss_pred Cccceeechhh------cccHHHHHHHHHHHHhh-hhcCCCEEEEEechhhcCH-----------H-HHHHHHHHhh---
Confidence 23333221 11234667766555432 2246778999999998741 1 2234454444
Q ss_pred ccccCccccccCCCCCccEEEeeCCCCCCccCCCCCCCCcceecC-CCHHHHHHHHHHHhhcCCC--CHHHHHHHh
Q 019334 179 RVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQ-PNLEDILNIVHRMYEKDGI--TKDEVGSIV 251 (342)
Q Consensus 179 ~v~l~g~~~~~~~~~~V~VIatTNr~~~LdpaLlRpGRfD~~i~v-P~~~~R~~Il~~~~~~~~~--s~~di~~lv 251 (342)
++ ..+|.+|.+||.++.|+++++. |.-.+.+. ++.++-.+.|+.++...++ +.+.+..++
T Consensus 147 ----------EP-p~~viFILaTte~~kI~~TI~S--RCq~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia 209 (484)
T PRK14956 147 ----------EP-PAHIVFILATTEFHKIPETILS--RCQDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIA 209 (484)
T ss_pred ----------cC-CCceEEEeecCChhhccHHHHh--hhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 22 4578888888889999999888 77665554 5666666777766665543 444444444
No 78
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=6.7e-12 Score=132.72 Aligned_cols=173 Identities=21% Similarity=0.228 Sum_probs=115.3
Q ss_pred ccccccHHHHHHHHHHHHHHHHHhhcCCCCCeEEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccc---------cc
Q 019334 44 GDYYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELES---------ER 114 (342)
Q Consensus 44 ~~~y~~~~f~d~l~~hi~K~~l~~~~~~k~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s---------~~ 114 (342)
++-|-=..-.+++.++|+=..|. |----.++.++||||.|||+++|.||..+|-.|+++|-|-+-+ .|
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLr---gs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGHRRTY 487 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLR---GSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGHRRTY 487 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhc---ccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcccceee
Confidence 34444444444445554444443 2122368889999999999999999999999999999977654 48
Q ss_pred cCCcHHHHHHHHHHHHHhhhhcCCceEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccc-cCccccc--cCC
Q 019334 115 AGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVS-IGQDWRE--SDI 191 (342)
Q Consensus 115 ~GEsEr~iR~~F~~A~e~~~~~~~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~-l~g~~~~--~~~ 191 (342)
+|.=.-.|-+...... ..-| +++|||||++. +| .|++ -.+.||++||-.-|-. ++. |.. .+
T Consensus 488 VGAMPGkiIq~LK~v~-----t~NP-liLiDEvDKlG--~g-~qGD-----PasALLElLDPEQNanFlDH-YLdVp~D- 551 (906)
T KOG2004|consen 488 VGAMPGKIIQCLKKVK-----TENP-LILIDEVDKLG--SG-HQGD-----PASALLELLDPEQNANFLDH-YLDVPVD- 551 (906)
T ss_pred eccCChHHHHHHHhhC-----CCCc-eEEeehhhhhC--CC-CCCC-----hHHHHHHhcChhhccchhhh-ccccccc-
Confidence 8875555545554432 1235 66789999975 22 2222 2357899998211111 111 111 12
Q ss_pred CCCccEEEeeCCCCCCccCCCCCCCCcceecCC--CHHHHHHHHHHHhh
Q 019334 192 TNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQP--NLEDILNIVHRMYE 238 (342)
Q Consensus 192 ~~~V~VIatTNr~~~LdpaLlRpGRfD~~i~vP--~~~~R~~Il~~~~~ 238 (342)
.+.|..|+|+|..++|||||+= ||+- |.+| ..++...|.+.|+-
T Consensus 552 LSkVLFicTAN~idtIP~pLlD--RMEv-IelsGYv~eEKv~IA~~yLi 597 (906)
T KOG2004|consen 552 LSKVLFICTANVIDTIPPPLLD--RMEV-IELSGYVAEEKVKIAERYLI 597 (906)
T ss_pred hhheEEEEeccccccCChhhhh--hhhe-eeccCccHHHHHHHHHHhhh
Confidence 5689999999999999999987 8854 5555 77999999988764
No 79
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.40 E-value=3.1e-12 Score=128.04 Aligned_cols=167 Identities=13% Similarity=0.163 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHHHHHHhhc----------CCCCCeEEEeecCCCCCHHHHHHHHHHHhCCceE---------------Ee
Q 019334 51 VFMASLLCHIVKNYIAHLL----------NVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPV---------------IM 105 (342)
Q Consensus 51 ~f~d~l~~hi~K~~l~~~~----------~~k~PlglgL~GPPG~GKTllaravA~~~g~~~i---------------~v 105 (342)
.|.++++..-++..+.... +.+.|..+++|||||||||++|+++|+.+.+.-- .-
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~ 82 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAG 82 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcC
Confidence 3555555554444443321 2237899999999999999999999998766410 00
Q ss_pred eccccc-----ccccCCcHHHHHHHHHHHHHhhhhcCCceEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCcc
Q 019334 106 SAGELE-----SERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRV 180 (342)
Q Consensus 106 s~~eL~-----s~~~GEsEr~iR~~F~~A~e~~~~~~~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v 180 (342)
+-+++. .+.+ +=..||++++.+... ...+..+|+||||+|.... . -...|+..++.
T Consensus 83 ~hpD~~~i~~~~~~i--~i~~iR~l~~~~~~~-p~~~~~kViiIDead~m~~-----------~-aanaLLk~LEe---- 143 (394)
T PRK07940 83 THPDVRVVAPEGLSI--GVDEVRELVTIAARR-PSTGRWRIVVIEDADRLTE-----------R-AANALLKAVEE---- 143 (394)
T ss_pred CCCCEEEeccccccC--CHHHHHHHHHHHHhC-cccCCcEEEEEechhhcCH-----------H-HHHHHHHHhhc----
Confidence 111110 0111 123489999887543 2246778999999999842 1 12346665553
Q ss_pred ccCccccccCCCCCccEEEeeCCCCCCccCCCCCCCCcceec-CCCHHHHHHHHHHHhhcCCCCHHHHHHHh
Q 019334 181 SIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYW-QPNLEDILNIVHRMYEKDGITKDEVGSIV 251 (342)
Q Consensus 181 ~l~g~~~~~~~~~~V~VIatTNr~~~LdpaLlRpGRfD~~i~-vP~~~~R~~Il~~~~~~~~~s~~di~~lv 251 (342)
+ ..++.+|.+||+++.|.|+++. |.=.+.+ .|+.++..++|.. ..+++.+.+..++
T Consensus 144 ---------p-~~~~~fIL~a~~~~~llpTIrS--Rc~~i~f~~~~~~~i~~~L~~---~~~~~~~~a~~la 200 (394)
T PRK07940 144 ---------P-PPRTVWLLCAPSPEDVLPTIRS--RCRHVALRTPSVEAVAEVLVR---RDGVDPETARRAA 200 (394)
T ss_pred ---------C-CCCCeEEEEECChHHChHHHHh--hCeEEECCCCCHHHHHHHHHH---hcCCCHHHHHHHH
Confidence 2 3445555566669999999988 6644333 3888887777752 2356665544444
No 80
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.40 E-value=1.5e-12 Score=139.67 Aligned_cols=146 Identities=20% Similarity=0.291 Sum_probs=95.5
Q ss_pred CCCe-EEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccc-----cccCCcHHHH----HHHHHHHHHhhhhcCCceE
Q 019334 72 KVPL-ILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELES-----ERAGEPGKLI----RERYRTASQVVQNQGKMSC 141 (342)
Q Consensus 72 k~Pl-glgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s-----~~~GEsEr~i----R~~F~~A~e~~~~~~~PcI 141 (342)
..|. .++++||||||||++|+++|+.++.+++.+++++... ..+|.+..-+ ...+.+|.. +...||
T Consensus 485 ~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG~~~gyvg~~~~g~L~~~v~----~~p~sV 560 (758)
T PRK11034 485 HKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVI----KHPHAV 560 (758)
T ss_pred CCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHcCCCCCcccccccchHHHHHH----hCCCcE
Confidence 4465 5899999999999999999999999999999987643 3444331110 012223321 233599
Q ss_pred EEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCC-----------------
Q 019334 142 LMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDF----------------- 204 (342)
Q Consensus 142 LfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~----------------- 204 (342)
|||||||+.-+ .|...|+.++|+-....-.| ...+ .+++.||+|||.-
T Consensus 561 lllDEieka~~------------~v~~~LLq~ld~G~ltd~~g--~~vd-~rn~iiI~TsN~g~~~~~~~~~g~~~~~~~ 625 (758)
T PRK11034 561 LLLDEIEKAHP------------DVFNLLLQVMDNGTLTDNNG--RKAD-FRNVVLVMTTNAGVRETERKSIGLIHQDNS 625 (758)
T ss_pred EEeccHhhhhH------------HHHHHHHHHHhcCeeecCCC--ceec-CCCcEEEEeCCcCHHHHhhcccCcccchhh
Confidence 99999999742 36778888888421110111 1112 3578999999932
Q ss_pred --------CCCccCCCCCCCCcceec-CC-CHHHHHHHHHHHhh
Q 019334 205 --------STIYAPLIRDGRMEKFYW-QP-NLEDILNIVHRMYE 238 (342)
Q Consensus 205 --------~~LdpaLlRpGRfD~~i~-vP-~~~~R~~Il~~~~~ 238 (342)
..+.|+|+. |+|.++. -| +.++-..|+..++.
T Consensus 626 ~~~~~~~~~~f~pefl~--Rid~ii~f~~L~~~~l~~I~~~~l~ 667 (758)
T PRK11034 626 TDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIV 667 (758)
T ss_pred HHHHHHHHHhcCHHHHc--cCCEEEEcCCCCHHHHHHHHHHHHH
Confidence 124466665 9998664 34 88888888876543
No 81
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.39 E-value=3.8e-12 Score=135.53 Aligned_cols=164 Identities=18% Similarity=0.268 Sum_probs=103.9
Q ss_pred cHHHHHHHHHHHHHHHHHhhcCCCCCeE-EEeecCCCCCHHHHHHHHHHHhCCceEEeecccccc-----c-------cc
Q 019334 49 APVFMASLLCHIVKNYIAHLLNVKVPLI-LGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELES-----E-------RA 115 (342)
Q Consensus 49 ~~~f~d~l~~hi~K~~l~~~~~~k~Plg-lgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s-----~-------~~ 115 (342)
.+...+.+..++.+.... +.....|.+ ++++||||||||.+|+++|+.++.+++.++.++..+ . |+
T Consensus 459 Q~~ai~~l~~~i~~~~~g-~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~~lig~~~gyv 537 (731)
T TIGR02639 459 QDEAIDSLVSSIKRSRAG-LGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTVSRLIGAPPGYV 537 (731)
T ss_pred cHHHHHHHHHHHHHHhcC-CCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccHHHHhcCCCCCc
Confidence 333444444444433222 222344665 789999999999999999999999999999988643 2 33
Q ss_pred CCcH-HHHHHHHHHHHHhhhhcCCceEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCC
Q 019334 116 GEPG-KLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNR 194 (342)
Q Consensus 116 GEsE-r~iR~~F~~A~e~~~~~~~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~ 194 (342)
|-.+ ..+. +|.. +...|||+|||||+.-+ .+...|+.++|+- .+. ++.....+ .++
T Consensus 538 g~~~~~~l~----~~~~----~~p~~VvllDEieka~~------------~~~~~Ll~~ld~g-~~~-d~~g~~vd-~~~ 594 (731)
T TIGR02639 538 GFEQGGLLT----EAVR----KHPHCVLLLDEIEKAHP------------DIYNILLQVMDYA-TLT-DNNGRKAD-FRN 594 (731)
T ss_pred ccchhhHHH----HHHH----hCCCeEEEEechhhcCH------------HHHHHHHHhhccC-eee-cCCCcccC-CCC
Confidence 3222 2233 2322 23468999999997632 2667888888851 111 11111112 357
Q ss_pred ccEEEeeCCCC-------------------------CCccCCCCCCCCccee-cCC-CHHHHHHHHHHHhh
Q 019334 195 IPIIFTGNDFS-------------------------TIYAPLIRDGRMEKFY-WQP-NLEDILNIVHRMYE 238 (342)
Q Consensus 195 V~VIatTNr~~-------------------------~LdpaLlRpGRfD~~i-~vP-~~~~R~~Il~~~~~ 238 (342)
+.||+|||... .+.|+|+ +|||..| |-| +.++...|++..+.
T Consensus 595 ~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~--~Rid~Vi~F~pLs~e~l~~Iv~~~L~ 663 (731)
T TIGR02639 595 VILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFR--NRLDAIIHFNPLSEEVLEKIVQKFVD 663 (731)
T ss_pred CEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHH--hcCCeEEEcCCCCHHHHHHHHHHHHH
Confidence 88999998753 2455665 6999865 445 88888999887654
No 82
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.39 E-value=1.6e-12 Score=136.39 Aligned_cols=169 Identities=17% Similarity=0.143 Sum_probs=110.5
Q ss_pred HHHHHHHHHHHhhcCCCCCeEEEeecCCCCCHHHHHHHHHHHh-----CCceEEeecccccccccCCcHHHHHHHHHHHH
Q 019334 56 LLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAM-----GIEPVIMSAGELESERAGEPGKLIRERYRTAS 130 (342)
Q Consensus 56 l~~hi~K~~l~~~~~~k~PlglgL~GPPG~GKTllaravA~~~-----g~~~i~vs~~eL~s~~~GEsEr~iR~~F~~A~ 130 (342)
++...++.+.. .++ +....|+|||++|||||.|+.|+|+++ |..++.+++.++.+.+...-.....+.|++-.
T Consensus 298 ~A~aaa~avae-~~~-~~~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~y 375 (617)
T PRK14086 298 FAHAAAVAVAE-APA-KAYNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRRY 375 (617)
T ss_pred HHHHHHHHHHh-Ccc-ccCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHHh
Confidence 44444555444 222 222348999999999999999999986 67889999999887665332222223454322
Q ss_pred HhhhhcCCceEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCC----CC
Q 019334 131 QVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDF----ST 206 (342)
Q Consensus 131 e~~~~~~~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~----~~ 206 (342)
.++.+|+||||+.+.++.. .+ ..|.++++. + + ..+..||+|+|++ ..
T Consensus 376 ------~~~DLLlIDDIq~l~gke~-------tq---eeLF~l~N~-----l---~-----e~gk~IIITSd~~P~eL~~ 426 (617)
T PRK14086 376 ------REMDILLVDDIQFLEDKES-------TQ---EEFFHTFNT-----L---H-----NANKQIVLSSDRPPKQLVT 426 (617)
T ss_pred ------hcCCEEEEehhccccCCHH-------HH---HHHHHHHHH-----H---H-----hcCCCEEEecCCChHhhhh
Confidence 2479999999999875321 11 123333331 0 0 1345688899886 35
Q ss_pred CccCCCCCCCCcce--ecC--CCHHHHHHHHHHHhhcCC--CCHHHHHHHhhcCCCC
Q 019334 207 IYAPLIRDGRMEKF--YWQ--PNLEDILNIVHRMYEKDG--ITKDEVGSIVKTFPNQ 257 (342)
Q Consensus 207 LdpaLlRpGRfD~~--i~v--P~~~~R~~Il~~~~~~~~--~s~~di~~lvd~f~~~ 257 (342)
|++.|+. ||..- +.+ |+.+.|.+||+.+++..+ ++.+-++-|+..+++.
T Consensus 427 l~~rL~S--Rf~~GLvv~I~~PD~EtR~aIL~kka~~r~l~l~~eVi~yLa~r~~rn 481 (617)
T PRK14086 427 LEDRLRN--RFEWGLITDVQPPELETRIAILRKKAVQEQLNAPPEVLEFIASRISRN 481 (617)
T ss_pred ccHHHHh--hhhcCceEEcCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhccCC
Confidence 7777877 88863 233 999999999999888765 5666667777666553
No 83
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.38 E-value=2.1e-12 Score=102.08 Aligned_cols=126 Identities=17% Similarity=0.223 Sum_probs=82.4
Q ss_pred CeEEEeecCCCCCHHHHHHHHHHHhCCc---eEEeeccccccc--------------ccCCcHHHHHHHHHHHHHhhhhc
Q 019334 74 PLILGIWGGKGQGKSFQTELIFQAMGIE---PVIMSAGELESE--------------RAGEPGKLIRERYRTASQVVQNQ 136 (342)
Q Consensus 74 PlglgL~GPPG~GKTllaravA~~~g~~---~i~vs~~eL~s~--------------~~GEsEr~iR~~F~~A~e~~~~~ 136 (342)
+..++|+||||||||++++++|..+.-. ++.+++...... .....+..++..+..|..
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 76 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARK----- 76 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHh-----
Confidence 4678999999999999999999999986 788887765432 335667777777777753
Q ss_pred CCceEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCCccCCCCCCC
Q 019334 137 GKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGR 216 (342)
Q Consensus 137 ~~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~~~LdpaLlRpGR 216 (342)
..|++|||||++....... .... ....... . ........+..||+|+|......+.++++ |
T Consensus 77 ~~~~viiiDei~~~~~~~~--------~~~~-~~~~~~~----~-----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~ 137 (148)
T smart00382 77 LKPDVLILDEITSLLDAEQ--------EALL-LLLEELR----L-----LLLLKSEKNLTVILTTNDEKDLGPALLRR-R 137 (148)
T ss_pred cCCCEEEEECCcccCCHHH--------HHHH-HhhhhhH----H-----HHHHHhcCCCEEEEEeCCCccCchhhhhh-c
Confidence 3479999999999864311 1000 0000000 0 00011145788999999744445555555 9
Q ss_pred CcceecC
Q 019334 217 MEKFYWQ 223 (342)
Q Consensus 217 fD~~i~v 223 (342)
+|..+.+
T Consensus 138 ~~~~~~~ 144 (148)
T smart00382 138 FDRRIVL 144 (148)
T ss_pred cceEEEe
Confidence 9987764
No 84
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=5.5e-12 Score=133.37 Aligned_cols=151 Identities=24% Similarity=0.288 Sum_probs=108.6
Q ss_pred CCCCCeEEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccc---------cccCCcHHHHHHHHHHHHHhhhhcCCce
Q 019334 70 NVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELES---------ERAGEPGKLIRERYRTASQVVQNQGKMS 140 (342)
Q Consensus 70 ~~k~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s---------~~~GEsEr~iR~~F~~A~e~~~~~~~Pc 140 (342)
..+. .++.|.||||+|||++++.||+.+|-.|+++|-|-+-+ .|+|.=.-.|-+...+|... -|
T Consensus 347 ~~kG-pILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHRRTYIGamPGrIiQ~mkka~~~-----NP- 419 (782)
T COG0466 347 KLKG-PILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHRRTYIGAMPGKIIQGMKKAGVK-----NP- 419 (782)
T ss_pred cCCC-cEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhccccccccccCChHHHHHHHHhCCc-----CC-
Confidence 3444 46777899999999999999999999999999977655 48888666677777777532 35
Q ss_pred EEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccc-cCccccccCC-CCCccEEEeeCCCCCCccCCCCCCCCc
Q 019334 141 CLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVS-IGQDWRESDI-TNRIPIIFTGNDFSTIYAPLIRDGRME 218 (342)
Q Consensus 141 ILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~-l~g~~~~~~~-~~~V~VIatTNr~~~LdpaLlRpGRfD 218 (342)
+++|||||+....+.++. .+.||+.||=.-|.. .+. |...+- .+.|..|+|+|..++||+||+= ||+
T Consensus 420 v~LLDEIDKm~ss~rGDP--------aSALLEVLDPEQN~~F~Dh-YLev~yDLS~VmFiaTANsl~tIP~PLlD--RME 488 (782)
T COG0466 420 VFLLDEIDKMGSSFRGDP--------ASALLEVLDPEQNNTFSDH-YLEVPYDLSKVMFIATANSLDTIPAPLLD--RME 488 (782)
T ss_pred eEEeechhhccCCCCCCh--------HHHHHhhcCHhhcCchhhc-cccCccchhheEEEeecCccccCChHHhc--cee
Confidence 677999999765433222 346888888211111 111 211111 5789999999999999999987 886
Q ss_pred ceecC-CCHHHHHHHHHHHhh
Q 019334 219 KFYWQ-PNLEDILNIVHRMYE 238 (342)
Q Consensus 219 ~~i~v-P~~~~R~~Il~~~~~ 238 (342)
-+-.- =+.++.++|-+.|+-
T Consensus 489 iI~lsgYt~~EKl~IAk~~Li 509 (782)
T COG0466 489 VIRLSGYTEDEKLEIAKRHLI 509 (782)
T ss_pred eeeecCCChHHHHHHHHHhcc
Confidence 53322 488999999987653
No 85
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.38 E-value=7.5e-12 Score=119.81 Aligned_cols=175 Identities=17% Similarity=0.303 Sum_probs=113.4
Q ss_pred cccHHHHHHHHHHHHHHHHHh-hcCCCCCeEEEeecCCCCCHHHHHHHHHHHhCCc------------------------
Q 019334 47 YIAPVFMASLLCHIVKNYIAH-LLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIE------------------------ 101 (342)
Q Consensus 47 y~~~~f~d~l~~hi~K~~l~~-~~~~k~PlglgL~GPPG~GKTllaravA~~~g~~------------------------ 101 (342)
|-|-.|.|.++..-+++.+.. +-.-+.|..+++|||||+|||++|+++|+.+.++
T Consensus 8 ~rp~~~~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~ 87 (355)
T TIGR02397 8 YRPQTFEDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLD 87 (355)
T ss_pred hCCCcHhhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCC
Confidence 444555555544444444433 2234678899999999999999999999997643
Q ss_pred eEEeecccccccccCCcHHHHHHHHHHHHHhhhhcCCceEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccc
Q 019334 102 PVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVS 181 (342)
Q Consensus 102 ~i~vs~~eL~s~~~GEsEr~iR~~F~~A~e~~~~~~~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~ 181 (342)
++.+++++ ..+-..+|+++..+.. ....+..-|++|||+|.... . ....|+..+++|
T Consensus 88 ~~~~~~~~------~~~~~~~~~l~~~~~~-~p~~~~~~vviidea~~l~~-----------~-~~~~Ll~~le~~---- 144 (355)
T TIGR02397 88 VIEIDAAS------NNGVDDIREILDNVKY-APSSGKYKVYIIDEVHMLSK-----------S-AFNALLKTLEEP---- 144 (355)
T ss_pred EEEeeccc------cCCHHHHHHHHHHHhc-CcccCCceEEEEeChhhcCH-----------H-HHHHHHHHHhCC----
Confidence 33333321 2234568888877643 22235567999999987631 1 123455555532
Q ss_pred cCccccccCCCCCccEEEeeCCCCCCccCCCCCCCCcceecC-CCHHHHHHHHHHHhhcCC--CCHHHHHHHhhcCCC
Q 019334 182 IGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQ-PNLEDILNIVHRMYEKDG--ITKDEVGSIVKTFPN 256 (342)
Q Consensus 182 l~g~~~~~~~~~~V~VIatTNr~~~LdpaLlRpGRfD~~i~v-P~~~~R~~Il~~~~~~~~--~s~~di~~lvd~f~~ 256 (342)
...+.+|.+||+++.|.++|+. |+..+-+. |+.++..++++.+++..+ ++.+.+..++....|
T Consensus 145 ----------~~~~~lIl~~~~~~~l~~~l~s--r~~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g 210 (355)
T TIGR02397 145 ----------PEHVVFILATTEPHKIPATILS--RCQRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADG 210 (355)
T ss_pred ----------ccceeEEEEeCCHHHHHHHHHh--heeEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 2457778888999999988876 66554343 789999999988877665 566666666654433
No 86
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.37 E-value=9.4e-12 Score=121.21 Aligned_cols=179 Identities=15% Similarity=0.188 Sum_probs=108.4
Q ss_pred cccHHHHHHHHHHHHHHHHHhh-cCCCCCeEEEeecCCCCCHHHHHHHHHHHhCCceEEeec-------ccccccccCCc
Q 019334 47 YIAPVFMASLLCHIVKNYIAHL-LNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSA-------GELESERAGEP 118 (342)
Q Consensus 47 y~~~~f~d~l~~hi~K~~l~~~-~~~k~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~-------~eL~s~~~GEs 118 (342)
|-|..|-|.++...+...+... -.-+.|..+++|||||+|||++|+++|+.+..+...... -++ +......
T Consensus 11 ~rP~~~~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l-~~~~~~~ 89 (367)
T PRK14970 11 YRPQTFDDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFEL-DAASNNS 89 (367)
T ss_pred HCCCcHHhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEe-ccccCCC
Confidence 3344444444333333333222 123678899999999999999999999998763221110 011 1111233
Q ss_pred HHHHHHHHHHHHHhhhhcCCceEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEE
Q 019334 119 GKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPII 198 (342)
Q Consensus 119 Er~iR~~F~~A~e~~~~~~~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VI 198 (342)
...+|+++++|... +..+.+.|+||||+|...+ + ....|+..+++| .....+|
T Consensus 90 ~~~i~~l~~~~~~~-p~~~~~kiviIDE~~~l~~-----------~-~~~~ll~~le~~--------------~~~~~~I 142 (367)
T PRK14970 90 VDDIRNLIDQVRIP-PQTGKYKIYIIDEVHMLSS-----------A-AFNAFLKTLEEP--------------PAHAIFI 142 (367)
T ss_pred HHHHHHHHHHHhhc-cccCCcEEEEEeChhhcCH-----------H-HHHHHHHHHhCC--------------CCceEEE
Confidence 46788888776432 2235678999999996632 1 123455555532 2345566
Q ss_pred EeeCCCCCCccCCCCCCCCcce-ecCCCHHHHHHHHHHHhhcCC--CCHHHHHHHhhcCC
Q 019334 199 FTGNDFSTIYAPLIRDGRMEKF-YWQPNLEDILNIVHRMYEKDG--ITKDEVGSIVKTFP 255 (342)
Q Consensus 199 atTNr~~~LdpaLlRpGRfD~~-i~vP~~~~R~~Il~~~~~~~~--~s~~di~~lvd~f~ 255 (342)
.+||.++.+.|++...++ .+ +..|+.++...+++...+..+ ++.+.++.++....
T Consensus 143 l~~~~~~kl~~~l~sr~~--~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~ 200 (367)
T PRK14970 143 LATTEKHKIIPTILSRCQ--IFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKAD 200 (367)
T ss_pred EEeCCcccCCHHHHhcce--eEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCC
Confidence 667778899999876443 22 223788888888887777666 56676676665433
No 87
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.37 E-value=1.2e-11 Score=132.12 Aligned_cols=146 Identities=17% Similarity=0.206 Sum_probs=99.1
Q ss_pred CeEEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccccccCCcHHHHHHHHHHHHHhhhhcCCceEEEeecccccCCC
Q 019334 74 PLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGR 153 (342)
Q Consensus 74 PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~~~GEsEr~iR~~F~~A~e~~~~~~~PcILfIDEIDAg~~r 153 (342)
+..++||||||||||++|+++|+.++.+|+.+++.. .+.+.+|+.+..+.+.....++..+|||||||....
T Consensus 52 ~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~-------~~i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~- 123 (725)
T PRK13341 52 VGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVL-------AGVKDLRAEVDRAKERLERHGKRTILFIDEVHRFNK- 123 (725)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhh-------hhhHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCH-
Confidence 345789999999999999999999999999988752 123457777777755443345678999999998631
Q ss_pred CCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEee--CCCCCCccCCCCCCCCcceec-CCCHHHHH
Q 019334 154 FGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTG--NDFSTIYAPLIRDGRMEKFYW-QPNLEDIL 230 (342)
Q Consensus 154 ~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatT--Nr~~~LdpaLlRpGRfD~~i~-vP~~~~R~ 230 (342)
. ....|+..+. ...+.+|++| |....++++|+..++ .+.+ .++.+++.
T Consensus 124 --------~---qQdaLL~~lE----------------~g~IiLI~aTTenp~~~l~~aL~SR~~--v~~l~pLs~edi~ 174 (725)
T PRK13341 124 --------A---QQDALLPWVE----------------NGTITLIGATTENPYFEVNKALVSRSR--LFRLKSLSDEDLH 174 (725)
T ss_pred --------H---HHHHHHHHhc----------------CceEEEEEecCCChHhhhhhHhhcccc--ceecCCCCHHHHH
Confidence 0 1223443333 1345556554 333568899886333 2223 26889999
Q ss_pred HHHHHHhh-------cC--CCCHHHHHHHhhcCCC
Q 019334 231 NIVHRMYE-------KD--GITKDEVGSIVKTFPN 256 (342)
Q Consensus 231 ~Il~~~~~-------~~--~~s~~di~~lvd~f~~ 256 (342)
.|++.++. .. .++.+-++.|+...+|
T Consensus 175 ~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~G 209 (725)
T PRK13341 175 QLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANG 209 (725)
T ss_pred HHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCC
Confidence 99988776 22 4677777877765554
No 88
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.37 E-value=9.9e-12 Score=122.12 Aligned_cols=178 Identities=14% Similarity=0.161 Sum_probs=106.3
Q ss_pred cccHHHHHHHHHHHHHHHHHhh-cCCCCCeEEEeecCCCCCHHHHHHHHHHHhCCceEEee----------------ccc
Q 019334 47 YIAPVFMASLLCHIVKNYIAHL-LNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMS----------------AGE 109 (342)
Q Consensus 47 y~~~~f~d~l~~hi~K~~l~~~-~~~k~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs----------------~~e 109 (342)
|=|..|-|.+|..-++..+... ..-+.|..++++||||||||++|+++|+++.+....-. -.+
T Consensus 10 yrP~~~~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d 89 (363)
T PRK14961 10 WRPQYFRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLD 89 (363)
T ss_pred hCCCchhhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCc
Confidence 3344455554433333333322 22367889999999999999999999999875321000 011
Q ss_pred ccc--cccCCcHHHHHHHHHHHHHhhhhcCCceEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCcccc
Q 019334 110 LES--ERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWR 187 (342)
Q Consensus 110 L~s--~~~GEsEr~iR~~F~~A~e~~~~~~~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~ 187 (342)
++. +-....-..+|++...+. .....+...|+||||+|.... . ....|+..+..
T Consensus 90 ~~~~~~~~~~~v~~ir~i~~~~~-~~p~~~~~kviIIDEa~~l~~-----------~-a~naLLk~lEe----------- 145 (363)
T PRK14961 90 LIEIDAASRTKVEEMREILDNIY-YSPSKSRFKVYLIDEVHMLSR-----------H-SFNALLKTLEE----------- 145 (363)
T ss_pred eEEecccccCCHHHHHHHHHHHh-cCcccCCceEEEEEChhhcCH-----------H-HHHHHHHHHhc-----------
Confidence 111 000122345677665443 222234567999999997631 1 12235544442
Q ss_pred ccCCCCCccEEEeeCCCCCCccCCCCCCCCcceec-CCCHHHHHHHHHHHhhcCC--CCHHHHHHHhhc
Q 019334 188 ESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYW-QPNLEDILNIVHRMYEKDG--ITKDEVGSIVKT 253 (342)
Q Consensus 188 ~~~~~~~V~VIatTNr~~~LdpaLlRpGRfD~~i~-vP~~~~R~~Il~~~~~~~~--~s~~di~~lvd~ 253 (342)
+ ..++.+|.+||.++.|+++++- |.-.+-+ .|+.++..++++..++..+ ++.+.+..++..
T Consensus 146 --~-~~~~~fIl~t~~~~~l~~tI~S--Rc~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~ 209 (363)
T PRK14961 146 --P-PQHIKFILATTDVEKIPKTILS--RCLQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYH 209 (363)
T ss_pred --C-CCCeEEEEEcCChHhhhHHHHh--hceEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 1 3467777788889999988764 6533333 3789999999998877765 566666665543
No 89
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.36 E-value=4.8e-13 Score=119.45 Aligned_cols=129 Identities=15% Similarity=0.142 Sum_probs=87.2
Q ss_pred eEEEeecCCCCCHHHHHHHHHHHhCC----ceEEeecccccccccCCcHHHHHHHHHHHHHhhhhcCCceEEEeeccccc
Q 019334 75 LILGIWGGKGQGKSFQTELIFQAMGI----EPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAG 150 (342)
Q Consensus 75 lglgL~GPPG~GKTllaravA~~~g~----~~i~vs~~eL~s~~~GEsEr~iR~~F~~A~e~~~~~~~PcILfIDEIDAg 150 (342)
..+++.||+|||||.+|+++|..+.. ++++++++++.. -++++..+...+-.+..... ....-||||||||+.
T Consensus 4 ~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~--~~~~~~~~~~l~~~~~~~v~-~~~~gVVllDEidKa 80 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSE--GDDVESSVSKLLGSPPGYVG-AEEGGVVLLDEIDKA 80 (171)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCS--HHHCSCHCHHHHHHTTCHHH-HHHHTEEEEETGGGC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccc--cchHHhhhhhhhhcccceee-ccchhhhhhHHHhhc
Confidence 46788999999999999999999997 999999999887 23334444444433321111 111239999999999
Q ss_pred CCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCCccC
Q 019334 151 LGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAP 210 (342)
Q Consensus 151 ~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~~~Ldpa 210 (342)
.++ .+...++....|...||.++|+ +.++-.. -...+ .+++.+|+|+|--......
T Consensus 81 ~~~-~~~~~~v~~~~V~~~LL~~le~-g~~~d~~-g~~vd-~~n~ifI~Tsn~~~~~~~~ 136 (171)
T PF07724_consen 81 HPS-NSGGADVSGEGVQNSLLQLLEG-GTLTDSY-GRTVD-TSNIIFIMTSNFGAEEIID 136 (171)
T ss_dssp SHT-TTTCSHHHHHHHHHHHHHHHHH-SEEEETT-CCEEE-GTTEEEEEEESSSTHHHHH
T ss_pred ccc-ccccchhhHHHHHHHHHHHhcc-cceeccc-ceEEE-eCCceEEEecccccchhhh
Confidence 876 4344567777889999999984 2232111 01223 5789999999876544433
No 90
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.36 E-value=8e-12 Score=125.38 Aligned_cols=152 Identities=22% Similarity=0.263 Sum_probs=102.9
Q ss_pred hhhhhhhcccccccHHHHHHHHHHHHHHHHHhhcCCCCCeEEEeecCCCCCHHHHHHHHHHHhCCceEEeeccccccccc
Q 019334 36 TRSFEYLQGDYYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERA 115 (342)
Q Consensus 36 ~r~f~~~~~~~y~~~~f~d~l~~hi~K~~l~~~~~~k~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~~~ 115 (342)
-+++.+.+|-.|+- +-.-++.+.+. -+..--+.||||||||||++|++||+..+++|..+|+. .
T Consensus 20 P~~lde~vGQ~HLl------g~~~~lrr~v~----~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv--~---- 83 (436)
T COG2256 20 PKSLDEVVGQEHLL------GEGKPLRRAVE----AGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAV--T---- 83 (436)
T ss_pred CCCHHHhcChHhhh------CCCchHHHHHh----cCCCceeEEECCCCCCHHHHHHHHHHhhCCceEEeccc--c----
Confidence 45555555555542 22233444444 34556788999999999999999999999999999986 2
Q ss_pred CCcHHHHHHHHHHHHHhhhhcCCceEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCc
Q 019334 116 GEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRI 195 (342)
Q Consensus 116 GEsEr~iR~~F~~A~e~~~~~~~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V 195 (342)
.+=+-||+++++|++... .|+-.|||||||.. ++-+| |- .||-.+. ...|
T Consensus 84 -~gvkdlr~i~e~a~~~~~-~gr~tiLflDEIHR----fnK~Q-----QD---~lLp~vE----------------~G~i 133 (436)
T COG2256 84 -SGVKDLREIIEEARKNRL-LGRRTILFLDEIHR----FNKAQ-----QD---ALLPHVE----------------NGTI 133 (436)
T ss_pred -ccHHHHHHHHHHHHHHHh-cCCceEEEEehhhh----cChhh-----hh---hhhhhhc----------------CCeE
Confidence 236789999999977654 57889999999975 44233 22 3453322 2345
Q ss_pred cEEEe-e-CCCCCCccCCCCCCCCcceecCC-CHHHHHHHHHH
Q 019334 196 PIIFT-G-NDFSTIYAPLIRDGRMEKFYWQP-NLEDILNIVHR 235 (342)
Q Consensus 196 ~VIat-T-Nr~~~LdpaLlRpGRfD~~i~vP-~~~~R~~Il~~ 235 (342)
..|+| | |-.-.|.|||+=.-| -+.+-| +.++-..+|+.
T Consensus 134 ilIGATTENPsF~ln~ALlSR~~--vf~lk~L~~~di~~~l~r 174 (436)
T COG2256 134 ILIGATTENPSFELNPALLSRAR--VFELKPLSSEDIKKLLKR 174 (436)
T ss_pred EEEeccCCCCCeeecHHHhhhhh--eeeeecCCHHHHHHHHHH
Confidence 55654 4 555578999886333 222336 77777777776
No 91
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.35 E-value=2.6e-11 Score=113.81 Aligned_cols=147 Identities=16% Similarity=0.189 Sum_probs=94.8
Q ss_pred EEEeecCCCCCHHHHHHHHHHHhC-----CceEEeecccccccccCCcHHHHHHHHHHHHHhhhhc-CCceEEEeecccc
Q 019334 76 ILGIWGGKGQGKSFQTELIFQAMG-----IEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQ-GKMSCLMINDIDA 149 (342)
Q Consensus 76 glgL~GPPG~GKTllaravA~~~g-----~~~i~vs~~eL~s~~~GEsEr~iR~~F~~A~e~~~~~-~~PcILfIDEIDA 149 (342)
.++||||||||||++++++++++. .+++.++.++-. .-..+++.+.......... ..+.+|+|||+|.
T Consensus 40 ~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~~------~~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~ 113 (319)
T PRK00440 40 HLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDER------GIDVIRNKIKEFARTAPVGGAPFKIIFLDEADN 113 (319)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCccccceEEecccccc------chHHHHHHHHHHHhcCCCCCCCceEEEEeCccc
Confidence 479999999999999999999873 355655544321 1223444444443322111 3467999999988
Q ss_pred cCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCCccCCCCCCCCcceec-CCCHHH
Q 019334 150 GLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYW-QPNLED 228 (342)
Q Consensus 150 g~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~~~LdpaLlRpGRfD~~i~-vP~~~~ 228 (342)
.... ....|+..++.+ ...+.+|.++|.++.+.+++.. |+-.+-+ .|+.++
T Consensus 114 l~~~------------~~~~L~~~le~~--------------~~~~~lIl~~~~~~~l~~~l~s--r~~~~~~~~l~~~e 165 (319)
T PRK00440 114 LTSD------------AQQALRRTMEMY--------------SQNTRFILSCNYSSKIIDPIQS--RCAVFRFSPLKKEA 165 (319)
T ss_pred CCHH------------HHHHHHHHHhcC--------------CCCCeEEEEeCCccccchhHHH--HhheeeeCCCCHHH
Confidence 7321 122455554521 2345677788888888888776 4444333 378899
Q ss_pred HHHHHHHHhhcCC--CCHHHHHHHhhcCCC
Q 019334 229 ILNIVHRMYEKDG--ITKDEVGSIVKTFPN 256 (342)
Q Consensus 229 R~~Il~~~~~~~~--~s~~di~~lvd~f~~ 256 (342)
...+++.+++..+ ++.+.++.++....|
T Consensus 166 i~~~l~~~~~~~~~~i~~~al~~l~~~~~g 195 (319)
T PRK00440 166 VAERLRYIAENEGIEITDDALEAIYYVSEG 195 (319)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 9999988887665 567777777765443
No 92
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.35 E-value=2.5e-11 Score=126.28 Aligned_cols=176 Identities=19% Similarity=0.335 Sum_probs=117.5
Q ss_pred HHHHhhhhhhhhcccccccHHHHHHHHHHHHHHHHHhhcCCCCCeEEEeecCCCCCHHHHHHHHHHHhCC----------
Q 019334 31 YRQKVTRSFEYLQGDYYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGI---------- 100 (342)
Q Consensus 31 ~~~~~~r~f~~~~~~~y~~~~f~d~l~~hi~K~~l~~~~~~k~PlglgL~GPPG~GKTllaravA~~~g~---------- 100 (342)
||.++.++|.+++|-.++. ..+++++. .-+.|..+++|||||||||++|+++|+.+.+
T Consensus 7 ~~k~rP~~f~~viGq~~v~---------~~L~~~i~---~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~ 74 (559)
T PRK05563 7 YRKWRPQTFEDVVGQEHIT---------KTLKNAIK---QGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCN 74 (559)
T ss_pred HHHhCCCcHHhccCcHHHH---------HHHHHHHH---cCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCC
Confidence 7777778888777655433 23444444 2367889999999999999999999999864
Q ss_pred --------------ceEEeecccccccccCCcHHHHHHHHHHHHHhhhhcCCceEEEeecccccCCCCCCCcccchhHHH
Q 019334 101 --------------EPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIV 166 (342)
Q Consensus 101 --------------~~i~vs~~eL~s~~~GEsEr~iR~~F~~A~e~~~~~~~PcILfIDEIDAg~~r~~~t~~~v~~q~V 166 (342)
.++.++++ .+.+-..||++...+.. ....++..|+||||+|.... . -
T Consensus 75 ~C~~C~~i~~g~~~dv~eidaa------s~~~vd~ir~i~~~v~~-~p~~~~~kViIIDE~~~Lt~-----------~-a 135 (559)
T PRK05563 75 ECEICKAITNGSLMDVIEIDAA------SNNGVDEIRDIRDKVKY-APSEAKYKVYIIDEVHMLST-----------G-A 135 (559)
T ss_pred ccHHHHHHhcCCCCCeEEeecc------ccCCHHHHHHHHHHHhh-CcccCCeEEEEEECcccCCH-----------H-H
Confidence 33444432 23456678888877643 33356778999999998731 1 1
Q ss_pred HHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCCccCCCCCCCCcceec-CCCHHHHHHHHHHHhhcCCC--C
Q 019334 167 VGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYW-QPNLEDILNIVHRMYEKDGI--T 243 (342)
Q Consensus 167 ~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~~~LdpaLlRpGRfD~~i~-vP~~~~R~~Il~~~~~~~~~--s 243 (342)
...|+..+.+| ...+.+|.+|+.++.|+++++. |..++-+ .|+.++-..+++.+++..++ +
T Consensus 136 ~naLLKtLEep--------------p~~~ifIlatt~~~ki~~tI~S--Rc~~~~f~~~~~~ei~~~L~~i~~~egi~i~ 199 (559)
T PRK05563 136 FNALLKTLEEP--------------PAHVIFILATTEPHKIPATILS--RCQRFDFKRISVEDIVERLKYILDKEGIEYE 199 (559)
T ss_pred HHHHHHHhcCC--------------CCCeEEEEEeCChhhCcHHHHh--HheEEecCCCCHHHHHHHHHHHHHHcCCCCC
Confidence 23555555532 3455556566788999998775 5555434 47888888888887776664 5
Q ss_pred HHHHHHHhhc
Q 019334 244 KDEVGSIVKT 253 (342)
Q Consensus 244 ~~di~~lvd~ 253 (342)
.+.+..++..
T Consensus 200 ~~al~~ia~~ 209 (559)
T PRK05563 200 DEALRLIARA 209 (559)
T ss_pred HHHHHHHHHH
Confidence 5555555543
No 93
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.34 E-value=2.1e-11 Score=125.78 Aligned_cols=177 Identities=16% Similarity=0.238 Sum_probs=111.7
Q ss_pred cccHHHHHHHHHHHHHHHHHh-hcCCCCCeEEEeecCCCCCHHHHHHHHHHHhCCceEEee-------------------
Q 019334 47 YIAPVFMASLLCHIVKNYIAH-LLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMS------------------- 106 (342)
Q Consensus 47 y~~~~f~d~l~~hi~K~~l~~-~~~~k~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs------------------- 106 (342)
|-|..|.|.++..-+...+.. ...-+.|..++++||||||||++|+++|+.+++.--..+
T Consensus 15 yRP~~f~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~ 94 (507)
T PRK06645 15 YRPSNFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNH 94 (507)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcC
Confidence 556666666544333333332 223477889999999999999999999999976321000
Q ss_pred -ccccccc--ccCCcHHHHHHHHHHHHHhhhhcCCceEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccC
Q 019334 107 -AGELESE--RAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIG 183 (342)
Q Consensus 107 -~~eL~s~--~~GEsEr~iR~~F~~A~e~~~~~~~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~ 183 (342)
-++++.- -...+-..||++...|. .....++..|++|||+|.... . ....|+..+.+
T Consensus 95 ~h~Dv~eidaas~~~vd~Ir~iie~a~-~~P~~~~~KVvIIDEa~~Ls~-----------~-a~naLLk~LEe------- 154 (507)
T PRK06645 95 NHPDIIEIDAASKTSVDDIRRIIESAE-YKPLQGKHKIFIIDEVHMLSK-----------G-AFNALLKTLEE------- 154 (507)
T ss_pred CCCcEEEeeccCCCCHHHHHHHHHHHH-hccccCCcEEEEEEChhhcCH-----------H-HHHHHHHHHhh-------
Confidence 0122110 11234567888887664 333346678999999987631 1 12345554442
Q ss_pred ccccccCCCCCccEEEeeCCCCCCccCCCCCCCCcceec-CCCHHHHHHHHHHHhhcCCC--CHHHHHHHhh
Q 019334 184 QDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYW-QPNLEDILNIVHRMYEKDGI--TKDEVGSIVK 252 (342)
Q Consensus 184 g~~~~~~~~~~V~VIatTNr~~~LdpaLlRpGRfD~~i~-vP~~~~R~~Il~~~~~~~~~--s~~di~~lvd 252 (342)
+ ...+.+|.+||.++.|+++++. |.-++-+ .++.++...+++.+++..++ +.+.++.++.
T Consensus 155 ------p-p~~~vfI~aTte~~kI~~tI~S--Rc~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~ 217 (507)
T PRK06645 155 ------P-PPHIIFIFATTEVQKIPATIIS--RCQRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAY 217 (507)
T ss_pred ------c-CCCEEEEEEeCChHHhhHHHHh--cceEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 2 3567777778889999999876 5533333 37899999999988877664 4555555554
No 94
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.33 E-value=1.4e-11 Score=110.57 Aligned_cols=162 Identities=15% Similarity=0.186 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHHhhcCCCCCeEEEeecCCCCCHHHHHHHHHHHh---CCceEEeecccccccccCCcHHHHHHHHHHHHH
Q 019334 55 SLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAM---GIEPVIMSAGELESERAGEPGKLIRERYRTASQ 131 (342)
Q Consensus 55 ~l~~hi~K~~l~~~~~~k~PlglgL~GPPG~GKTllaravA~~~---g~~~i~vs~~eL~s~~~GEsEr~iR~~F~~A~e 131 (342)
.-+..-+++|+. ...+..++|+||||||||++|++++.++ +.+++.+++.++.+.. .+.+..
T Consensus 23 ~~~~~~l~~~~~----~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~~~--------~~~~~~--- 87 (226)
T TIGR03420 23 AELLAALRQLAA----GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQAD--------PEVLEG--- 87 (226)
T ss_pred HHHHHHHHHHHh----cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHHhH--------HHHHhh---
Confidence 345556666654 3667899999999999999999999876 5788889988887432 122211
Q ss_pred hhhhcCCceEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCC-CCCCc--
Q 019334 132 VVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGND-FSTIY-- 208 (342)
Q Consensus 132 ~~~~~~~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr-~~~Ld-- 208 (342)
. .++.+|+|||+|....... .+ ..|..+++. +. ..+..+|+|+|. ++.++
T Consensus 88 -~---~~~~lLvIDdi~~l~~~~~-------~~---~~L~~~l~~---------~~----~~~~~iIits~~~~~~~~~~ 140 (226)
T TIGR03420 88 -L---EQADLVCLDDVEAIAGQPE-------WQ---EALFHLYNR---------VR----EAGGRLLIAGRAAPAQLPLR 140 (226)
T ss_pred -c---ccCCEEEEeChhhhcCChH-------HH---HHHHHHHHH---------HH----HcCCeEEEECCCChHHCCcc
Confidence 1 2356999999998643210 01 123333331 00 112356666663 43332
Q ss_pred -cCCCCCCCCcceecC--CCHHHHHHHHHHHhhcC--CCCHHHHHHHhhcCCCCc
Q 019334 209 -APLIRDGRMEKFYWQ--PNLEDILNIVHRMYEKD--GITKDEVGSIVKTFPNQA 258 (342)
Q Consensus 209 -paLlRpGRfD~~i~v--P~~~~R~~Il~~~~~~~--~~s~~di~~lvd~f~~~~ 258 (342)
+.|..-..+...+.+ |+.+++..+++.+.... .++.+-++.|...++|..
T Consensus 141 ~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~~~gn~ 195 (226)
T TIGR03420 141 LPDLRTRLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRHGSRDM 195 (226)
T ss_pred cHHHHHHHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCH
Confidence 556642222345554 68899999998776544 467777888877666653
No 95
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.33 E-value=2.8e-11 Score=129.66 Aligned_cols=170 Identities=14% Similarity=0.180 Sum_probs=109.3
Q ss_pred ccHHHHHHHHHHHHHHHHHh-hcCCCCCeEEEeecCCCCCHHHHHHHHHHHhCCc------------------------e
Q 019334 48 IAPVFMASLLCHIVKNYIAH-LLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIE------------------------P 102 (342)
Q Consensus 48 ~~~~f~d~l~~hi~K~~l~~-~~~~k~PlglgL~GPPG~GKTllaravA~~~g~~------------------------~ 102 (342)
=|..|-|.++..-+++.|.. +-+-+.|..++||||||||||++++++|+.+++. +
T Consensus 11 RPqtFdEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~Dv 90 (830)
T PRK07003 11 RPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDY 90 (830)
T ss_pred CCCcHHHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceE
Confidence 34444444433333333322 2233678899999999999999999999999763 3
Q ss_pred EEeecccccccccCCcHHHHHHHHHHHHHhhhhcCCceEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCcccc
Q 019334 103 VIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSI 182 (342)
Q Consensus 103 i~vs~~eL~s~~~GEsEr~iR~~F~~A~e~~~~~~~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l 182 (342)
+.+++++ ..+-..||++.+.+... ...++-.|+||||+|.+.. .. ...||..|.
T Consensus 91 iEIDAas------~rgVDdIReLIe~a~~~-P~~gr~KVIIIDEah~LT~-----------~A-~NALLKtLE------- 144 (830)
T PRK07003 91 VEMDAAS------NRGVDEMAALLERAVYA-PVDARFKVYMIDEVHMLTN-----------HA-FNAMLKTLE------- 144 (830)
T ss_pred EEecccc------cccHHHHHHHHHHHHhc-cccCCceEEEEeChhhCCH-----------HH-HHHHHHHHH-------
Confidence 3333321 12234577777666422 2245678999999998742 11 223444433
Q ss_pred CccccccCCCCCccEEEeeCCCCCCccCCCCCCCCcceecC-CCHHHHHHHHHHHhhcCCC--CHHHHHHHhh
Q 019334 183 GQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQ-PNLEDILNIVHRMYEKDGI--TKDEVGSIVK 252 (342)
Q Consensus 183 ~g~~~~~~~~~~V~VIatTNr~~~LdpaLlRpGRfD~~i~v-P~~~~R~~Il~~~~~~~~~--s~~di~~lvd 252 (342)
+. ..++.+|.+||.++.|.+.++- |.-++-+- ++.++-.++|+.++..+++ +.+.+..++.
T Consensus 145 ------EP-P~~v~FILaTtd~~KIp~TIrS--RCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~ 208 (830)
T PRK07003 145 ------EP-PPHVKFILATTDPQKIPVTVLS--RCLQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLAR 208 (830)
T ss_pred ------hc-CCCeEEEEEECChhhccchhhh--heEEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 22 4678899999999999998776 77555554 6888888888888877664 4555555553
No 96
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.33 E-value=2.3e-11 Score=128.73 Aligned_cols=175 Identities=15% Similarity=0.267 Sum_probs=113.8
Q ss_pred HHHHhhhhhhhhcccccccHHHHHHHHHHHHHHHHHhhcCCCCCeEEEeecCCCCCHHHHHHHHHHHhCC----------
Q 019334 31 YRQKVTRSFEYLQGDYYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGI---------- 100 (342)
Q Consensus 31 ~~~~~~r~f~~~~~~~y~~~~f~d~l~~hi~K~~l~~~~~~k~PlglgL~GPPG~GKTllaravA~~~g~---------- 100 (342)
||.++-++|.+++|--++ ...+++++. .-+.|..++++||||||||++|+++|+.+++
T Consensus 6 arKyRPktFddVIGQe~v---------v~~L~~aI~---~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg 73 (702)
T PRK14960 6 ARKYRPRNFNELVGQNHV---------SRALSSALE---RGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCE 73 (702)
T ss_pred HHHhCCCCHHHhcCcHHH---------HHHHHHHHH---cCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCc
Confidence 444455566666554433 233444443 3367889999999999999999999999986
Q ss_pred --------------ceEEeecccccccccCCcHHHHHHHHHHHHHhhhhcCCceEEEeecccccCCCCCCCcccchhHHH
Q 019334 101 --------------EPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIV 166 (342)
Q Consensus 101 --------------~~i~vs~~eL~s~~~GEsEr~iR~~F~~A~e~~~~~~~PcILfIDEIDAg~~r~~~t~~~v~~q~V 166 (342)
.++.+++++- .+-..||++...+.- ....++..|+||||+|.+-. . -
T Consensus 74 ~C~sC~~I~~g~hpDviEIDAAs~------~~VddIReli~~~~y-~P~~gk~KV~IIDEVh~LS~-----------~-A 134 (702)
T PRK14960 74 VCATCKAVNEGRFIDLIEIDAASR------TKVEDTRELLDNVPY-APTQGRFKVYLIDEVHMLST-----------H-S 134 (702)
T ss_pred cCHHHHHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhh-hhhcCCcEEEEEechHhcCH-----------H-H
Confidence 3444444321 124457777655532 22246788999999997632 1 1
Q ss_pred HHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCCccCCCCCCCCcceecC-CCHHHHHHHHHHHhhcCC--CC
Q 019334 167 VGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQ-PNLEDILNIVHRMYEKDG--IT 243 (342)
Q Consensus 167 ~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~~~LdpaLlRpGRfD~~i~v-P~~~~R~~Il~~~~~~~~--~s 243 (342)
...|+..+..| ...+.+|.+||++..++++++. |.-++-+- ++.++-...|+.+++..+ ++
T Consensus 135 ~NALLKtLEEP--------------P~~v~FILaTtd~~kIp~TIlS--RCq~feFkpLs~eEI~k~L~~Il~kEgI~id 198 (702)
T PRK14960 135 FNALLKTLEEP--------------PEHVKFLFATTDPQKLPITVIS--RCLQFTLRPLAVDEITKHLGAILEKEQIAAD 198 (702)
T ss_pred HHHHHHHHhcC--------------CCCcEEEEEECChHhhhHHHHH--hhheeeccCCCHHHHHHHHHHHHHHcCCCCC
Confidence 23466555532 3568888888999999988874 77665443 688888888877777665 34
Q ss_pred HHHHHHHhh
Q 019334 244 KDEVGSIVK 252 (342)
Q Consensus 244 ~~di~~lvd 252 (342)
.+.+..++.
T Consensus 199 ~eAL~~IA~ 207 (702)
T PRK14960 199 QDAIWQIAE 207 (702)
T ss_pred HHHHHHHHH
Confidence 455555543
No 97
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.32 E-value=1.5e-11 Score=127.00 Aligned_cols=190 Identities=18% Similarity=0.196 Sum_probs=106.9
Q ss_pred cccccccHHHHHHHHHHHHHHHHHhhcCCCCCeEEEeecCCCCCHHHHHHHHHHHh----------CCceEEeeccc---
Q 019334 43 QGDYYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAM----------GIEPVIMSAGE--- 109 (342)
Q Consensus 43 ~~~~y~~~~f~d~l~~hi~K~~l~~~~~~k~PlglgL~GPPG~GKTllaravA~~~----------g~~~i~vs~~e--- 109 (342)
...-|-|..|-|.++..-....+....-...|..++|+||||||||++|+++...+ +.+|+.+++..
T Consensus 55 ~~~~~rp~~f~~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~~~~~ 134 (531)
T TIGR02902 55 LSEKTRPKSFDEIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATTARF 134 (531)
T ss_pred HHHhhCcCCHHHeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEccccccC
Confidence 33445556666655433222222222222456788999999999999999998642 46899998763
Q ss_pred ----ccccccCCcHHHHHHHHHHHHH------------hhhhcCCceEEEeecccccCCCCCCCcccchhHHHHHHHHhh
Q 019334 110 ----LESERAGEPGKLIRERYRTASQ------------VVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNL 173 (342)
Q Consensus 110 ----L~s~~~GEsEr~iR~~F~~A~e------------~~~~~~~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~l 173 (342)
+.+...|....- .|..|.. ... +....+|||||||..-+ ..+..|+..
T Consensus 135 ~~~~~~~~li~~~~~p---~~~~~~~~g~~g~~~~~~G~l~-~a~gG~L~IdEI~~L~~------------~~q~~LL~~ 198 (531)
T TIGR02902 135 DERGIADPLIGSVHDP---IYQGAGPLGIAGIPQPKPGAVT-RAHGGVLFIDEIGELHP------------VQMNKLLKV 198 (531)
T ss_pred CccccchhhcCCcccc---hhccccccccCCcccccCchhh-ccCCcEEEEechhhCCH------------HHHHHHHHH
Confidence 222222211000 0100000 000 11247999999999742 123345544
Q ss_pred cCCCCccccC-ccccccC--------------CCCCc-cEEEeeCCCCCCccCCCCCCCCcceecC-CCHHHHHHHHHHH
Q 019334 174 SDNPTRVSIG-QDWRESD--------------ITNRI-PIIFTGNDFSTIYAPLIRDGRMEKFYWQ-PNLEDILNIVHRM 236 (342)
Q Consensus 174 lD~p~~v~l~-g~~~~~~--------------~~~~V-~VIatTNr~~~LdpaLlRpGRfD~~i~v-P~~~~R~~Il~~~ 236 (342)
+.+-. +.+. +.+...+ ....+ .|++|||.|+.|+|+|++ |+.++.+. ++.+++.+|++..
T Consensus 199 Le~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrs--R~~~I~f~pL~~eei~~Il~~~ 275 (531)
T TIGR02902 199 LEDRK-VFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRS--RCVEIFFRPLLDEEIKEIAKNA 275 (531)
T ss_pred HHhCe-eeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhh--hhheeeCCCCCHHHHHHHHHHH
Confidence 43211 1111 1111110 01223 455678899999999998 88876665 4788999999988
Q ss_pred hhcCC--CCHHHHHHHh
Q 019334 237 YEKDG--ITKDEVGSIV 251 (342)
Q Consensus 237 ~~~~~--~s~~di~~lv 251 (342)
.+..+ ++.+.++.+.
T Consensus 276 a~k~~i~is~~al~~I~ 292 (531)
T TIGR02902 276 AEKIGINLEKHALELIV 292 (531)
T ss_pred HHHcCCCcCHHHHHHHH
Confidence 87665 4566555443
No 98
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.32 E-value=1.2e-11 Score=125.38 Aligned_cols=182 Identities=16% Similarity=0.155 Sum_probs=110.3
Q ss_pred HHHHHHHHHHHHHhhc--CCCCCeEEEeecCCCCCHHHHHHHHHHHh---CCceEEeecccccccccCCcHHHHHHHHHH
Q 019334 54 ASLLCHIVKNYIAHLL--NVKVPLILGIWGGKGQGKSFQTELIFQAM---GIEPVIMSAGELESERAGEPGKLIRERYRT 128 (342)
Q Consensus 54 d~l~~hi~K~~l~~~~--~~k~PlglgL~GPPG~GKTllaravA~~~---g~~~i~vs~~eL~s~~~GEsEr~iR~~F~~ 128 (342)
..++...++.+..... +-.....++||||||||||.+++|+++++ |..++.+++.++.+.+...-...--+.|+.
T Consensus 119 N~~a~~~a~~~a~~~~~~~~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~ 198 (445)
T PRK12422 119 NDLPHRILQEFTKVSEQGKGFPFNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRSGEMQRFRQ 198 (445)
T ss_pred HHHHHHHHHHHHhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcchHHHHHH
Confidence 4455566666654111 11223578999999999999999999875 788899998776653321100000122332
Q ss_pred HHHhhhhcCCceEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCC----
Q 019334 129 ASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDF---- 204 (342)
Q Consensus 129 A~e~~~~~~~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~---- 204 (342)
.. ..+.+|+||||+.+.++.. + .+.+. .++|.+- ..+.+||.|||++
T Consensus 199 ~~------~~~dvLiIDDiq~l~~k~~-~-----qeelf-~l~N~l~----------------~~~k~IIlts~~~p~~l 249 (445)
T PRK12422 199 FY------RNVDALFIEDIEVFSGKGA-T-----QEEFF-HTFNSLH----------------TEGKLIVISSTCAPQDL 249 (445)
T ss_pred Hc------ccCCEEEEcchhhhcCChh-h-----HHHHH-HHHHHHH----------------HCCCcEEEecCCCHHHH
Confidence 21 2478999999999764321 1 12222 2222111 1234688888774
Q ss_pred CCCccCCCCCCCCcc--eec--CCCHHHHHHHHHHHhhcCC--CCHHHHHHHhhcCCCCccchHHHHH
Q 019334 205 STIYAPLIRDGRMEK--FYW--QPNLEDILNIVHRMYEKDG--ITKDEVGSIVKTFPNQALDFYGALR 266 (342)
Q Consensus 205 ~~LdpaLlRpGRfD~--~i~--vP~~~~R~~Il~~~~~~~~--~s~~di~~lvd~f~~~~~df~gAlr 266 (342)
..+++.|+. ||.. .+. .|+.++|..||+......+ ++.+-++.++..+++.-=...+|+.
T Consensus 250 ~~l~~rL~S--R~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~~~l~~evl~~la~~~~~dir~L~g~l~ 315 (445)
T PRK12422 250 KAMEERLIS--RFEWGIAIPLHPLTKEGLRSFLERKAEALSIRIEETALDFLIEALSSNVKSLLHALT 315 (445)
T ss_pred hhhHHHHHh--hhcCCeEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHH
Confidence 356677777 8863 333 3899999999998777665 5666677777766653223334544
No 99
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.32 E-value=2.6e-11 Score=128.81 Aligned_cols=179 Identities=13% Similarity=0.202 Sum_probs=111.7
Q ss_pred cccHHHHHHHHHHHHHHHHHh-hcCCCCCeEEEeecCCCCCHHHHHHHHHHHhCCceEE-------------eecc---c
Q 019334 47 YIAPVFMASLLCHIVKNYIAH-LLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVI-------------MSAG---E 109 (342)
Q Consensus 47 y~~~~f~d~l~~hi~K~~l~~-~~~~k~PlglgL~GPPG~GKTllaravA~~~g~~~i~-------------vs~~---e 109 (342)
|-|..|-|.++..-++..|.. +-.-+.|..++|+||||||||++|+++|+.+.+.--. +..+ +
T Consensus 10 YRP~tFddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~D 89 (709)
T PRK08691 10 WRPKTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVD 89 (709)
T ss_pred hCCCCHHHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccc
Confidence 344445555433332222222 2234778999999999999999999999998764110 1111 1
Q ss_pred cc--ccccCCcHHHHHHHHHHHHHhhhhcCCceEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCcccc
Q 019334 110 LE--SERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWR 187 (342)
Q Consensus 110 L~--s~~~GEsEr~iR~~F~~A~e~~~~~~~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~ 187 (342)
++ +...+.+-..||++...+. .....++..|+||||+|.+.. . ....|+..+..
T Consensus 90 vlEidaAs~~gVd~IRelle~a~-~~P~~gk~KVIIIDEad~Ls~-----------~-A~NALLKtLEE----------- 145 (709)
T PRK08691 90 LLEIDAASNTGIDNIREVLENAQ-YAPTAGKYKVYIIDEVHMLSK-----------S-AFNAMLKTLEE----------- 145 (709)
T ss_pred eEEEeccccCCHHHHHHHHHHHH-hhhhhCCcEEEEEECccccCH-----------H-HHHHHHHHHHh-----------
Confidence 11 1112334567888886653 332246678999999987521 1 12345555542
Q ss_pred ccCCCCCccEEEeeCCCCCCccCCCCCCCCcceec-CCCHHHHHHHHHHHhhcCCC--CHHHHHHHhhcC
Q 019334 188 ESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYW-QPNLEDILNIVHRMYEKDGI--TKDEVGSIVKTF 254 (342)
Q Consensus 188 ~~~~~~~V~VIatTNr~~~LdpaLlRpGRfD~~i~-vP~~~~R~~Il~~~~~~~~~--s~~di~~lvd~f 254 (342)
. ...+.+|.+||++..|.+.++ +|+-++-+ -++.++-...|+.+++..++ +.+.+..++...
T Consensus 146 --P-p~~v~fILaTtd~~kL~~TIr--SRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A 210 (709)
T PRK08691 146 --P-PEHVKFILATTDPHKVPVTVL--SRCLQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAA 210 (709)
T ss_pred --C-CCCcEEEEEeCCccccchHHH--HHHhhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHh
Confidence 1 356888888999999998876 67755433 37888888888888887764 555566666443
No 100
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.32 E-value=2.3e-11 Score=128.70 Aligned_cols=148 Identities=13% Similarity=0.231 Sum_probs=100.8
Q ss_pred CCCCCeEEEeecCCCCCHHHHHHHHHHHhCC-----------------------------ceEEeecccccccccCCcHH
Q 019334 70 NVKVPLILGIWGGKGQGKSFQTELIFQAMGI-----------------------------EPVIMSAGELESERAGEPGK 120 (342)
Q Consensus 70 ~~k~PlglgL~GPPG~GKTllaravA~~~g~-----------------------------~~i~vs~~eL~s~~~GEsEr 120 (342)
.-+.|..++|+||+|||||++|+++|+.+.+ .++.+++++ ..+-.
T Consensus 34 ~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG~hpDviEIdAas------~~gVD 107 (700)
T PRK12323 34 QQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAGRFVDYIEMDAAS------NRGVD 107 (700)
T ss_pred hCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcCCCCcceEecccc------cCCHH
Confidence 3478889999999999999999999999987 233333321 12235
Q ss_pred HHHHHHHHHHHhhhhcCCceEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEe
Q 019334 121 LIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFT 200 (342)
Q Consensus 121 ~iR~~F~~A~e~~~~~~~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIat 200 (342)
.||++.+.+.... ..++-.|+||||+|.+-. . ....||..|. +. ..++.+|.+
T Consensus 108 dIReLie~~~~~P-~~gr~KViIIDEah~Ls~-----------~-AaNALLKTLE-------------EP-P~~v~FILa 160 (700)
T PRK12323 108 EMAQLLDKAVYAP-TAGRFKVYMIDEVHMLTN-----------H-AFNAMLKTLE-------------EP-PEHVKFILA 160 (700)
T ss_pred HHHHHHHHHHhch-hcCCceEEEEEChHhcCH-----------H-HHHHHHHhhc-------------cC-CCCceEEEE
Confidence 5777776664332 257789999999998731 1 1234555444 22 467888999
Q ss_pred eCCCCCCccCCCCCCCCcceec-CCCHHHHHHHHHHHhhcCCC--CHHHHHHHhh
Q 019334 201 GNDFSTIYAPLIRDGRMEKFYW-QPNLEDILNIVHRMYEKDGI--TKDEVGSIVK 252 (342)
Q Consensus 201 TNr~~~LdpaLlRpGRfD~~i~-vP~~~~R~~Il~~~~~~~~~--s~~di~~lvd 252 (342)
||.++.|.+.++- |.-++-+ .++.++-.+.|+.++..+++ +.+.+..++.
T Consensus 161 Ttep~kLlpTIrS--RCq~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~ 213 (700)
T PRK12323 161 TTDPQKIPVTVLS--RCLQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQ 213 (700)
T ss_pred eCChHhhhhHHHH--HHHhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 9999999999876 6655444 37888888888877766654 3443444443
No 101
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.30 E-value=5.7e-11 Score=122.34 Aligned_cols=170 Identities=14% Similarity=0.201 Sum_probs=104.8
Q ss_pred cccHHHHHHHHHHHHHHHHHh-hcCCCCCeEEEeecCCCCCHHHHHHHHHHHhCCc-----------------------e
Q 019334 47 YIAPVFMASLLCHIVKNYIAH-LLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIE-----------------------P 102 (342)
Q Consensus 47 y~~~~f~d~l~~hi~K~~l~~-~~~~k~PlglgL~GPPG~GKTllaravA~~~g~~-----------------------~ 102 (342)
|=|..|-|.++.+-++..+.. +..-+.|..+++|||||||||++|+++|+.+.+. +
T Consensus 8 yRP~~~~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv 87 (504)
T PRK14963 8 ARPITFDEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDV 87 (504)
T ss_pred hCCCCHHHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCce
Confidence 334444444444433333322 1233678889999999999999999999998652 3
Q ss_pred EEeecccccccccCCcHHHHHHHHHHHHHhhhhcCCceEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCcccc
Q 019334 103 VIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSI 182 (342)
Q Consensus 103 i~vs~~eL~s~~~GEsEr~iR~~F~~A~e~~~~~~~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l 182 (342)
+.+++.+ .-+-..+|++...+.. ....+.+.||+|||+|... +.....|+..+.+|
T Consensus 88 ~el~~~~------~~~vd~iR~l~~~~~~-~p~~~~~kVVIIDEad~ls------------~~a~naLLk~LEep----- 143 (504)
T PRK14963 88 LEIDAAS------NNSVEDVRDLREKVLL-APLRGGRKVYILDEAHMMS------------KSAFNALLKTLEEP----- 143 (504)
T ss_pred EEecccc------cCCHHHHHHHHHHHhh-ccccCCCeEEEEECccccC------------HHHHHHHHHHHHhC-----
Confidence 4444421 1124557776544433 2224678899999998542 11123455444421
Q ss_pred CccccccCCCCCccEEEeeCCCCCCccCCCCCCCCcceec-CCCHHHHHHHHHHHhhcCCC--CHHHHHHHh
Q 019334 183 GQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYW-QPNLEDILNIVHRMYEKDGI--TKDEVGSIV 251 (342)
Q Consensus 183 ~g~~~~~~~~~~V~VIatTNr~~~LdpaLlRpGRfD~~i~-vP~~~~R~~Il~~~~~~~~~--s~~di~~lv 251 (342)
...+.+|.+||.++.|++++.. |...+-+ .|+.++-.+.|+.+++..++ +.+.+..++
T Consensus 144 ---------~~~t~~Il~t~~~~kl~~~I~S--Rc~~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia 204 (504)
T PRK14963 144 ---------PEHVIFILATTEPEKMPPTILS--RTQHFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVA 204 (504)
T ss_pred ---------CCCEEEEEEcCChhhCChHHhc--ceEEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 3456677778889999998876 5544434 37888888888877766654 444444444
No 102
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.30 E-value=6.3e-12 Score=123.46 Aligned_cols=146 Identities=16% Similarity=0.112 Sum_probs=92.4
Q ss_pred CeEEEeecCCCCCHHHHHHHHHHHhCCceEEeeccccccc--ccCCcHHHHH----------HHHHHHHHhhhhcCCceE
Q 019334 74 PLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESE--RAGEPGKLIR----------ERYRTASQVVQNQGKMSC 141 (342)
Q Consensus 74 PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~--~~GEsEr~iR----------~~F~~A~e~~~~~~~PcI 141 (342)
...|+|.||||||||++++.+|+++|.++++|+..+-.+. ++|...-.++ ..+-.|. ..+++
T Consensus 64 ~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~------~~g~i 137 (327)
T TIGR01650 64 DRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWAL------QHNVA 137 (327)
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHH------hCCeE
Confidence 4569999999999999999999999999999988777765 5665321111 1222332 25899
Q ss_pred EEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCCccCCCCCC------
Q 019334 142 LMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDG------ 215 (342)
Q Consensus 142 LfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~~~LdpaLlRpG------ 215 (342)
|++||||+.-+. +...|..+++.-..+.+++........+...||||+|..+.-|..=+=-|
T Consensus 138 lllDEin~a~p~------------~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~ 205 (327)
T TIGR01650 138 LCFDEYDAGRPD------------VMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQ 205 (327)
T ss_pred EEechhhccCHH------------HHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCH
Confidence 999999987431 33344445553223434332222221235679999999875443211111
Q ss_pred -CCcce---ecC--CCHHHHHHHHHHHh
Q 019334 216 -RMEKF---YWQ--PNLEDILNIVHRMY 237 (342)
Q Consensus 216 -RfD~~---i~v--P~~~~R~~Il~~~~ 237 (342)
=+||+ +.+ |+.++=.+|+....
T Consensus 206 A~lDRF~i~~~~~Yp~~e~E~~Il~~~~ 233 (327)
T TIGR01650 206 AQMDRWSIVTTLNYLEHDNEAAIVLAKA 233 (327)
T ss_pred HHHhheeeEeeCCCCCHHHHHHHHHhhc
Confidence 23454 223 89999999987654
No 103
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.29 E-value=1.1e-11 Score=125.21 Aligned_cols=166 Identities=18% Similarity=0.261 Sum_probs=103.3
Q ss_pred HHHHHHHHHHHHHhhcCCCCCeEEEeecCCCCCHHHHHHHHHHHh-----CCceEEeecccccccccC----CcHHHHHH
Q 019334 54 ASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAM-----GIEPVIMSAGELESERAG----EPGKLIRE 124 (342)
Q Consensus 54 d~l~~hi~K~~l~~~~~~k~PlglgL~GPPG~GKTllaravA~~~-----g~~~i~vs~~eL~s~~~G----EsEr~iR~ 124 (342)
...+.+.++.+.. .++. +..++||||||||||.|+.|+|+++ +..++.+++.++.+.+.. .+....++
T Consensus 113 n~~a~~~~~~~~~-~~~~--~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~~~~~~~~~f~~ 189 (440)
T PRK14088 113 NSFAYHAALEVAK-NPGR--YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNEFRE 189 (440)
T ss_pred hHHHHHHHHHHHh-CcCC--CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHhcccHHHHHH
Confidence 3456666666654 3332 3459999999999999999999885 567888898887654421 11112222
Q ss_pred HHHHHHHhhhhcCCceEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEee-CC
Q 019334 125 RYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTG-ND 203 (342)
Q Consensus 125 ~F~~A~e~~~~~~~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatT-Nr 203 (342)
.| +..|.+|+|||+|.+.++.+ + ...+..++-.+.+ .+..||.|+ +.
T Consensus 190 ~~---------~~~~dvLlIDDi~~l~~~~~-~-----q~elf~~~n~l~~-----------------~~k~iIitsd~~ 237 (440)
T PRK14088 190 KY---------RKKVDVLLIDDVQFLIGKTG-V-----QTELFHTFNELHD-----------------SGKQIVICSDRE 237 (440)
T ss_pred HH---------HhcCCEEEEechhhhcCcHH-H-----HHHHHHHHHHHHH-----------------cCCeEEEECCCC
Confidence 22 12489999999999875421 1 1223322221111 123566666 45
Q ss_pred CCC---CccCCCCCCCCcc--ee--cCCCHHHHHHHHHHHhhcCC--CCHHHHHHHhhcCCC
Q 019334 204 FST---IYAPLIRDGRMEK--FY--WQPNLEDILNIVHRMYEKDG--ITKDEVGSIVKTFPN 256 (342)
Q Consensus 204 ~~~---LdpaLlRpGRfD~--~i--~vP~~~~R~~Il~~~~~~~~--~s~~di~~lvd~f~~ 256 (342)
|+. +.+.|+- ||.- .+ -.|+.+.|.+|++......+ ++.+-++.++..+++
T Consensus 238 p~~l~~l~~rL~S--R~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l~~ev~~~Ia~~~~~ 297 (440)
T PRK14088 238 PQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKKIARKMLEIEHGELPEEVLNFVAENVDD 297 (440)
T ss_pred HHHHHHHHHHHhh--HHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcccc
Confidence 554 3444554 6653 22 24999999999998887554 677777778777765
No 104
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.29 E-value=2.9e-11 Score=112.18 Aligned_cols=161 Identities=14% Similarity=0.145 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHHHhhcCCCCCeEEEeecCCCCCHHHHHHHHHHHhC---CceEEeecccccccccCCcHHHHHHHHHHHH
Q 019334 54 ASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMG---IEPVIMSAGELESERAGEPGKLIRERYRTAS 130 (342)
Q Consensus 54 d~l~~hi~K~~l~~~~~~k~PlglgL~GPPG~GKTllaravA~~~g---~~~i~vs~~eL~s~~~GEsEr~iR~~F~~A~ 130 (342)
+..+...++++.. ...+..+.||||||||||.++.++|++.. .....++..+..+. ...+.+.|+
T Consensus 29 n~~a~~~l~~~~~----~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~~-----~~~~~~~~~--- 96 (235)
T PRK08084 29 NDSLLAALQNALR----QEHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAWF-----VPEVLEGME--- 96 (235)
T ss_pred cHHHHHHHHHHHh----CCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhhh-----hHHHHHHhh---
Confidence 4456667777765 22335789999999999999999998765 33444444432211 111222221
Q ss_pred HhhhhcCCceEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCC-CC---
Q 019334 131 QVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDF-ST--- 206 (342)
Q Consensus 131 e~~~~~~~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~-~~--- 206 (342)
+-.+|+||||+...+... ..+.+...+-...+ ..+..+|+|||.+ ..
T Consensus 97 -------~~dlliiDdi~~~~~~~~------~~~~lf~l~n~~~e----------------~g~~~li~ts~~~p~~l~~ 147 (235)
T PRK08084 97 -------QLSLVCIDNIECIAGDEL------WEMAIFDLYNRILE----------------SGRTRLLITGDRPPRQLNL 147 (235)
T ss_pred -------hCCEEEEeChhhhcCCHH------HHHHHHHHHHHHHH----------------cCCCeEEEeCCCChHHcCc
Confidence 136899999998764211 11222222221111 2234566665544 44
Q ss_pred CccCCCCCCCCcc--eec--CCCHHHHHHHHHHHhhcCC--CCHHHHHHHhhcCCCC
Q 019334 207 IYAPLIRDGRMEK--FYW--QPNLEDILNIVHRMYEKDG--ITKDEVGSIVKTFPNQ 257 (342)
Q Consensus 207 LdpaLlRpGRfD~--~i~--vP~~~~R~~Il~~~~~~~~--~s~~di~~lvd~f~~~ 257 (342)
+.|.|+- ||-- .+. .|+.++|.+|++......+ ++.+-++.|+..+++.
T Consensus 148 ~~~~L~S--Rl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~~~v~~~L~~~~~~d 202 (235)
T PRK08084 148 GLPDLAS--RLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPEDVGRFLLKRLDRE 202 (235)
T ss_pred ccHHHHH--HHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhhcCC
Confidence 4677776 7753 232 4899999999988666554 6777778888766663
No 105
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.28 E-value=7.8e-11 Score=123.81 Aligned_cols=195 Identities=18% Similarity=0.247 Sum_probs=111.7
Q ss_pred hhhcccccccHHHHHHHH-HHHHHHHHHhhcCCCCCeEEEeecCCCCCHHHHHHHHHHHh----------CCceEEeecc
Q 019334 40 EYLQGDYYIAPVFMASLL-CHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAM----------GIEPVIMSAG 108 (342)
Q Consensus 40 ~~~~~~~y~~~~f~d~l~-~hi~K~~l~~~~~~k~PlglgL~GPPG~GKTllaravA~~~----------g~~~i~vs~~ 108 (342)
.+.....|-|..|-|.++ .+.++..+..+. ...|..++|+||||||||++|+++++.. +.+|+.+++.
T Consensus 141 ~~~~~~~~rp~~~~~iiGqs~~~~~l~~~ia-~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~ 219 (615)
T TIGR02903 141 HKSAQSLLRPRAFSEIVGQERAIKALLAKVA-SPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGT 219 (615)
T ss_pred hhHHhhhcCcCcHHhceeCcHHHHHHHHHHh-cCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEech
Confidence 333444555777777664 344444444332 2446679999999999999999998665 4679999987
Q ss_pred ccc-------ccccCCcHHHHHHHHHHHHHhhhh------------cCCceEEEeecccccCCCCCCCcccchhHHHHHH
Q 019334 109 ELE-------SERAGEPGKLIRERYRTASQVVQN------------QGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGT 169 (342)
Q Consensus 109 eL~-------s~~~GEsEr~iR~~F~~A~e~~~~------------~~~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~t 169 (342)
.+- ..+.|.....+ |..|.+..+. .....+|||||++..-. .....
T Consensus 220 ~l~~d~~~i~~~llg~~~~~~---~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~------------~~Q~~ 284 (615)
T TIGR02903 220 TLRWDPREVTNPLLGSVHDPI---YQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDP------------LLQNK 284 (615)
T ss_pred hccCCHHHHhHHhcCCccHHH---HHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCH------------HHHHH
Confidence 652 22333321111 2222111110 11235999999876531 12234
Q ss_pred HHhhcCCCCccc-cCccccccC--------------CCCCccEE-EeeCCCCCCccCCCCCCCCcceecCC-CHHHHHHH
Q 019334 170 LMNLSDNPTRVS-IGQDWRESD--------------ITNRIPII-FTGNDFSTIYAPLIRDGRMEKFYWQP-NLEDILNI 232 (342)
Q Consensus 170 Ll~llD~p~~v~-l~g~~~~~~--------------~~~~V~VI-atTNr~~~LdpaLlRpGRfD~~i~vP-~~~~R~~I 232 (342)
|+..+.+-. +. ..+.|...+ ....+.+| +|||.++.++|+|+. ||..+.+.| +.++..+|
T Consensus 285 Ll~~Le~~~-v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrS--R~~~i~~~pls~edi~~I 361 (615)
T TIGR02903 285 LLKVLEDKR-VEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRS--RCAEVFFEPLTPEDIALI 361 (615)
T ss_pred HHHHHhhCe-EEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHh--ceeEEEeCCCCHHHHHHH
Confidence 455544211 11 111222111 01223333 467789999999876 898776664 88999999
Q ss_pred HHHHhhcCC--CCHHHHHHHhhcC
Q 019334 233 VHRMYEKDG--ITKDEVGSIVKTF 254 (342)
Q Consensus 233 l~~~~~~~~--~s~~di~~lvd~f 254 (342)
++......+ ++. ++..++..+
T Consensus 362 l~~~a~~~~v~ls~-eal~~L~~y 384 (615)
T TIGR02903 362 VLNAAEKINVHLAA-GVEELIARY 384 (615)
T ss_pred HHHHHHHcCCCCCH-HHHHHHHHC
Confidence 998877654 454 455555444
No 106
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.27 E-value=5.4e-11 Score=122.59 Aligned_cols=147 Identities=12% Similarity=0.210 Sum_probs=95.0
Q ss_pred CCCCeEEEeecCCCCCHHHHHHHHHHHhCCc------------------------eEEeecccccccccCCcHHHHHHHH
Q 019334 71 VKVPLILGIWGGKGQGKSFQTELIFQAMGIE------------------------PVIMSAGELESERAGEPGKLIRERY 126 (342)
Q Consensus 71 ~k~PlglgL~GPPG~GKTllaravA~~~g~~------------------------~i~vs~~eL~s~~~GEsEr~iR~~F 126 (342)
-+.|-.+++|||||||||++|+++|+.+.+. ++.+++++ ..+-..+|++.
T Consensus 35 ~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~eidaas------~~~v~~iR~l~ 108 (509)
T PRK14958 35 QYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEVDAAS------RTKVEDTRELL 108 (509)
T ss_pred CCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEEEcccc------cCCHHHHHHHH
Confidence 4678899999999999999999999999873 44454432 12334577766
Q ss_pred HHHHHhhhhcCCceEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCC
Q 019334 127 RTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFST 206 (342)
Q Consensus 127 ~~A~e~~~~~~~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~~~ 206 (342)
..+. .....++-.|+||||+|...+ . -...|+..+.. + ..++.+|.+||++..
T Consensus 109 ~~~~-~~p~~~~~kV~iIDE~~~ls~-----------~-a~naLLk~LEe-------------p-p~~~~fIlattd~~k 161 (509)
T PRK14958 109 DNIP-YAPTKGRFKVYLIDEVHMLSG-----------H-SFNALLKTLEE-------------P-PSHVKFILATTDHHK 161 (509)
T ss_pred HHHh-hccccCCcEEEEEEChHhcCH-----------H-HHHHHHHHHhc-------------c-CCCeEEEEEECChHh
Confidence 5443 223346678999999998742 1 12345555553 2 356777888889999
Q ss_pred CccCCCCCCCCcceecC-CCHHHHHHHHHHHhhcCCC--CHHHHHHHhh
Q 019334 207 IYAPLIRDGRMEKFYWQ-PNLEDILNIVHRMYEKDGI--TKDEVGSIVK 252 (342)
Q Consensus 207 LdpaLlRpGRfD~~i~v-P~~~~R~~Il~~~~~~~~~--s~~di~~lvd 252 (342)
+.+.++- |.-.+-+- ++.++-...++.+++..++ +.+.+..++.
T Consensus 162 l~~tI~S--Rc~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~ 208 (509)
T PRK14958 162 LPVTVLS--RCLQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLAR 208 (509)
T ss_pred chHHHHH--HhhhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 9988655 55443333 4666666666666655543 4444444443
No 107
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.27 E-value=1.5e-11 Score=125.33 Aligned_cols=137 Identities=18% Similarity=0.173 Sum_probs=82.7
Q ss_pred CeEEEeecCCCCCHHHHHHHHHHHhCCc-------eEEeec----ccccccc--cCCcHH----HHHHHHHHHHHhhhhc
Q 019334 74 PLILGIWGGKGQGKSFQTELIFQAMGIE-------PVIMSA----GELESER--AGEPGK----LIRERYRTASQVVQNQ 136 (342)
Q Consensus 74 PlglgL~GPPG~GKTllaravA~~~g~~-------~i~vs~----~eL~s~~--~GEsEr----~iR~~F~~A~e~~~~~ 136 (342)
...++|+||||||||++|+++|..+... ++.++. .+++.++ .|.+-+ .+.+.+..|.+. .
T Consensus 194 ~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~---p 270 (459)
T PRK11331 194 KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQ---P 270 (459)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCCCCCeEecCchHHHHHHHHHhc---c
Confidence 4678889999999999999999988542 222322 2444333 111111 222334444321 2
Q ss_pred CCceEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCC---ccccCccccc-----cCCCCCccEEEeeCCCC---
Q 019334 137 GKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPT---RVSIGQDWRE-----SDITNRIPIIFTGNDFS--- 205 (342)
Q Consensus 137 ~~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~---~v~l~g~~~~-----~~~~~~V~VIatTNr~~--- 205 (342)
..|++|||||||.+-. ..+.+.|+++++.-. .+.++-.+.. ...-.++.||+|.|..+
T Consensus 271 ~~~~vliIDEINRani-----------~kiFGel~~lLE~~~rg~~~~v~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~ 339 (459)
T PRK11331 271 EKKYVFIIDEINRANL-----------SKVFGEVMMLMEHDKRGENWSVPLTYSENDEERFYVPENVYIIGLMNTADRSL 339 (459)
T ss_pred cCCcEEEEehhhccCH-----------HHhhhhhhhhccccccccccceeeeccccccccccCCCCeEEEEecCccccch
Confidence 5799999999998632 236777777776321 1111111111 12235899999999998
Q ss_pred -CCccCCCCCCCCcceecCCCH
Q 019334 206 -TIYAPLIRDGRMEKFYWQPNL 226 (342)
Q Consensus 206 -~LdpaLlRpGRfD~~i~vP~~ 226 (342)
.||+||+| ||.-+-..|+.
T Consensus 340 ~~lD~AlrR--RF~fi~i~p~~ 359 (459)
T PRK11331 340 AVVDYALRR--RFSFIDIEPGF 359 (459)
T ss_pred hhccHHHHh--hhheEEecCCC
Confidence 89999999 88432223643
No 108
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.24 E-value=1.6e-10 Score=125.36 Aligned_cols=151 Identities=18% Similarity=0.214 Sum_probs=97.1
Q ss_pred eEEEeecCCCCCHHHHHHHHHHHh----------CCceEEeecccccccc-----------------cCCcHHHHHHHHH
Q 019334 75 LILGIWGGKGQGKSFQTELIFQAM----------GIEPVIMSAGELESER-----------------AGEPGKLIRERYR 127 (342)
Q Consensus 75 lglgL~GPPG~GKTllaravA~~~----------g~~~i~vs~~eL~s~~-----------------~GEsEr~iR~~F~ 127 (342)
..+.|+||||||||+.++.|..++ .+.++.|++-.+...+ .+.+.+.+..+|.
T Consensus 782 nvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~ 861 (1164)
T PTZ00112 782 QILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFN 861 (1164)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHh
Confidence 456799999999999999998776 2567888874433221 1123455666665
Q ss_pred HHHHhhhhcCCceEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCC---C
Q 019334 128 TASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGND---F 204 (342)
Q Consensus 128 ~A~e~~~~~~~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr---~ 204 (342)
...+. .+.++||+|||||.+..+ .|.+ |.++++ |.... ..+|.||+++|. +
T Consensus 862 ~L~k~---~r~v~IIILDEID~L~kK---------~QDV---LYnLFR----------~~~~s-~SKLiLIGISNdlDLp 915 (1164)
T PTZ00112 862 QNKKD---NRNVSILIIDEIDYLITK---------TQKV---LFTLFD----------WPTKI-NSKLVLIAISNTMDLP 915 (1164)
T ss_pred hhhcc---cccceEEEeehHhhhCcc---------HHHH---HHHHHH----------Hhhcc-CCeEEEEEecCchhcc
Confidence 44221 345789999999998753 1333 344444 22222 457899999997 5
Q ss_pred CCCccCCCCCCCCcceecC-CCHHHHHHHHHHHhhcC--CCCHHHHHHHh
Q 019334 205 STIYAPLIRDGRMEKFYWQ-PNLEDILNIVHRMYEKD--GITKDEVGSIV 251 (342)
Q Consensus 205 ~~LdpaLlRpGRfD~~i~v-P~~~~R~~Il~~~~~~~--~~s~~di~~lv 251 (342)
+.|+|.|.-.....++.|. ++.++..+||+..+... -++.+-|+-++
T Consensus 916 erLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIA 965 (1164)
T PTZ00112 916 ERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCA 965 (1164)
T ss_pred hhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Confidence 6677777654444445555 59999999998766532 25554444444
No 109
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.23 E-value=1.5e-10 Score=122.04 Aligned_cols=171 Identities=12% Similarity=0.179 Sum_probs=105.6
Q ss_pred cccHHHHHHHHHHHHHHHHHhhc-CCCCCeEEEeecCCCCCHHHHHHHHHHHhCCc------------------------
Q 019334 47 YIAPVFMASLLCHIVKNYIAHLL-NVKVPLILGIWGGKGQGKSFQTELIFQAMGIE------------------------ 101 (342)
Q Consensus 47 y~~~~f~d~l~~hi~K~~l~~~~-~~k~PlglgL~GPPG~GKTllaravA~~~g~~------------------------ 101 (342)
|=|..|.|.++..-++..+.... .-+.+..+++|||||||||++|+++|+.+.+.
T Consensus 10 yRP~sf~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~hpD 89 (624)
T PRK14959 10 YRPQTFAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHVD 89 (624)
T ss_pred hCCCCHHHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCCCc
Confidence 34445555554444444444322 23667899999999999999999999999873
Q ss_pred eEEeecccccccccCCcHHHHHHHHHHHHHhhhhcCCceEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccc
Q 019334 102 PVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVS 181 (342)
Q Consensus 102 ~i~vs~~eL~s~~~GEsEr~iR~~F~~A~e~~~~~~~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~ 181 (342)
++.+++..- . +=..+|++-+.+ ......+...||||||+|..-. .....|+..++.
T Consensus 90 v~eId~a~~----~--~Id~iR~L~~~~-~~~p~~g~~kVIIIDEad~Lt~------------~a~naLLk~LEE----- 145 (624)
T PRK14959 90 VVEIDGASN----R--GIDDAKRLKEAI-GYAPMEGRYKVFIIDEAHMLTR------------EAFNALLKTLEE----- 145 (624)
T ss_pred eEEEecccc----c--CHHHHHHHHHHH-HhhhhcCCceEEEEEChHhCCH------------HHHHHHHHHhhc-----
Confidence 333433210 0 112344432222 2222246678999999998731 123456655552
Q ss_pred cCccccccCCCCCccEEEeeCCCCCCccCCCCCCCCcceecC-CCHHHHHHHHHHHhhcCC--CCHHHHHHHhh
Q 019334 182 IGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQ-PNLEDILNIVHRMYEKDG--ITKDEVGSIVK 252 (342)
Q Consensus 182 l~g~~~~~~~~~~V~VIatTNr~~~LdpaLlRpGRfD~~i~v-P~~~~R~~Il~~~~~~~~--~s~~di~~lvd 252 (342)
. ..++.+|.+||.++.|.+.|+. |.-.+-+- ++.++-..+|+.++...+ ++.+.++.++.
T Consensus 146 --------P-~~~~ifILaTt~~~kll~TI~S--Rcq~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~ 208 (624)
T PRK14959 146 --------P-PARVTFVLATTEPHKFPVTIVS--RCQHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIAR 208 (624)
T ss_pred --------c-CCCEEEEEecCChhhhhHHHHh--hhhccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 2 3567778888888889888765 55443333 678888888887776655 56666666654
No 110
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.23 E-value=2.8e-10 Score=100.85 Aligned_cols=147 Identities=14% Similarity=0.159 Sum_probs=98.0
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHhCCc------------------------eEEeecccccccccCCcHHHHHHHHH
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQAMGIE------------------------PVIMSAGELESERAGEPGKLIRERYR 127 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~~g~~------------------------~i~vs~~eL~s~~~GEsEr~iR~~F~ 127 (342)
+.|..++||||||+|||++|+++++.+-.. +..++.. ... -+-..+|++.+
T Consensus 12 ~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~---~~~--~~~~~i~~i~~ 86 (188)
T TIGR00678 12 RLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPE---GQS--IKVDQVRELVE 86 (188)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccc---cCc--CCHHHHHHHHH
Confidence 678899999999999999999999997542 1222111 001 12357777776
Q ss_pred HHHHhhhhcCCceEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCC
Q 019334 128 TASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTI 207 (342)
Q Consensus 128 ~A~e~~~~~~~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~~~L 207 (342)
.+... ...+...|++|||+|..... ....|+..+++| .+.+.+|.+||.++.|
T Consensus 87 ~~~~~-~~~~~~kviiide~~~l~~~------------~~~~Ll~~le~~--------------~~~~~~il~~~~~~~l 139 (188)
T TIGR00678 87 FLSRT-PQESGRRVVIIEDAERMNEA------------AANALLKTLEEP--------------PPNTLFILITPSPEKL 139 (188)
T ss_pred HHccC-cccCCeEEEEEechhhhCHH------------HHHHHHHHhcCC--------------CCCeEEEEEECChHhC
Confidence 66432 22467889999999887421 122466555532 3456677778888999
Q ss_pred ccCCCCCCCCcceec-CCCHHHHHHHHHHHhhcCCCCHHHHHHHhhcCCC
Q 019334 208 YAPLIRDGRMEKFYW-QPNLEDILNIVHRMYEKDGITKDEVGSIVKTFPN 256 (342)
Q Consensus 208 dpaLlRpGRfD~~i~-vP~~~~R~~Il~~~~~~~~~s~~di~~lvd~f~~ 256 (342)
++++.. |...+-+ .|+.++..++|+.. +++.+.++.++....|
T Consensus 140 ~~~i~s--r~~~~~~~~~~~~~~~~~l~~~----gi~~~~~~~i~~~~~g 183 (188)
T TIGR00678 140 LPTIRS--RCQVLPFPPLSEEALLQWLIRQ----GISEEAAELLLALAGG 183 (188)
T ss_pred hHHHHh--hcEEeeCCCCCHHHHHHHHHHc----CCCHHHHHHHHHHcCC
Confidence 999987 4433223 37899988888765 5777777777654433
No 111
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.20 E-value=2.2e-10 Score=118.45 Aligned_cols=147 Identities=14% Similarity=0.262 Sum_probs=95.6
Q ss_pred CCCCeEEEeecCCCCCHHHHHHHHHHHhCCc------------------------eEEeecccccccccCCcHHHHHHHH
Q 019334 71 VKVPLILGIWGGKGQGKSFQTELIFQAMGIE------------------------PVIMSAGELESERAGEPGKLIRERY 126 (342)
Q Consensus 71 ~k~PlglgL~GPPG~GKTllaravA~~~g~~------------------------~i~vs~~eL~s~~~GEsEr~iR~~F 126 (342)
-+.|..+++|||||||||++|+++|+.+.+. ++.++++. .-+-..||++.
T Consensus 35 ~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ei~~~~------~~~vd~ir~l~ 108 (527)
T PRK14969 35 QRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIEVDAAS------NTQVDAMRELL 108 (527)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeEeeccc------cCCHHHHHHHH
Confidence 4778899999999999999999999999773 12222210 12344678877
Q ss_pred HHHHHhhhhcCCceEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCC
Q 019334 127 RTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFST 206 (342)
Q Consensus 127 ~~A~e~~~~~~~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~~~ 206 (342)
..+. .....++..|++|||+|.... . ....|+..+..| ...+.+|.+||+++.
T Consensus 109 ~~~~-~~p~~~~~kVvIIDEad~ls~-----------~-a~naLLK~LEep--------------p~~~~fIL~t~d~~k 161 (527)
T PRK14969 109 DNAQ-YAPTRGRFKVYIIDEVHMLSK-----------S-AFNAMLKTLEEP--------------PEHVKFILATTDPQK 161 (527)
T ss_pred HHHh-hCcccCCceEEEEcCcccCCH-----------H-HHHHHHHHHhCC--------------CCCEEEEEEeCChhh
Confidence 6663 323346678999999987631 1 122455544422 356778888888998
Q ss_pred CccCCCCCCCCcceec-CCCHHHHHHHHHHHhhcCCC--CHHHHHHHhh
Q 019334 207 IYAPLIRDGRMEKFYW-QPNLEDILNIVHRMYEKDGI--TKDEVGSIVK 252 (342)
Q Consensus 207 LdpaLlRpGRfD~~i~-vP~~~~R~~Il~~~~~~~~~--s~~di~~lvd 252 (342)
+.+.++- |.-.+-+ -|+.++-...|+.+++..++ +.+.+..++.
T Consensus 162 il~tI~S--Rc~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~ 208 (527)
T PRK14969 162 IPVTVLS--RCLQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLAR 208 (527)
T ss_pred CchhHHH--HHHHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 8887543 4433323 36788878777777766654 4455555554
No 112
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.20 E-value=1.3e-10 Score=118.07 Aligned_cols=191 Identities=14% Similarity=0.125 Sum_probs=114.3
Q ss_pred hcccccccHHHHHHHHHHHHHHHHHhhcCCCCCeEEEeecCCCCCHHHHHHHHHHHh-----CCceEEeecccccccccC
Q 019334 42 LQGDYYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAM-----GIEPVIMSAGELESERAG 116 (342)
Q Consensus 42 ~~~~~y~~~~f~d~l~~hi~K~~l~~~~~~k~PlglgL~GPPG~GKTllaravA~~~-----g~~~i~vs~~eL~s~~~G 116 (342)
+.+.|++.+. ...+...++.+.. .++. ....++||||+|||||.|++|+++++ +..++.+++.++...+..
T Consensus 113 tFdnFv~g~~--n~~A~~aa~~~a~-~~~~-~~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~ 188 (450)
T PRK14087 113 TFENFVIGSS--NEQAFIAVQTVSK-NPGI-SYNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVD 188 (450)
T ss_pred chhcccCCCc--HHHHHHHHHHHHh-CcCc-ccCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHH
Confidence 4455555542 3456666666654 3432 23468999999999999999999854 578899999998876543
Q ss_pred CcHHHHHHHHHHHHHhhhhcCCceEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCcc
Q 019334 117 EPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIP 196 (342)
Q Consensus 117 EsEr~iR~~F~~A~e~~~~~~~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~ 196 (342)
.-.... +.+.+..+. -..+.+|+||||+...++.. .+...-.++|.+. ..+-.
T Consensus 189 ~l~~~~-~~~~~~~~~---~~~~dvLiIDDiq~l~~k~~-------~~e~lf~l~N~~~----------------~~~k~ 241 (450)
T PRK14087 189 ILQKTH-KEIEQFKNE---ICQNDVLIIDDVQFLSYKEK-------TNEIFFTIFNNFI----------------ENDKQ 241 (450)
T ss_pred HHHHhh-hHHHHHHHH---hccCCEEEEeccccccCCHH-------HHHHHHHHHHHHH----------------HcCCc
Confidence 211100 112222221 13478999999999864321 1222222333221 12336
Q ss_pred EEEeeCCCCC----CccCCCCCCCCccee----cCCCHHHHHHHHHHHhhcCC----CCHHHHHHHhhcCCCCccchHHH
Q 019334 197 IIFTGNDFST----IYAPLIRDGRMEKFY----WQPNLEDILNIVHRMYEKDG----ITKDEVGSIVKTFPNQALDFYGA 264 (342)
Q Consensus 197 VIatTNr~~~----LdpaLlRpGRfD~~i----~vP~~~~R~~Il~~~~~~~~----~s~~di~~lvd~f~~~~~df~gA 264 (342)
||.|+|++.. +++.|+- ||..-+ ..|+.++|.+||+..++..+ ++.+-++.++..++|..=...+|
T Consensus 242 iIltsd~~P~~l~~l~~rL~S--R~~~Gl~~~L~~pd~e~r~~iL~~~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~ga 319 (450)
T PRK14087 242 LFFSSDKSPELLNGFDNRLIT--RFNMGLSIAIQKLDNKTATAIIKKEIKNQNIKQEVTEEAINFISNYYSDDVRKIKGS 319 (450)
T ss_pred EEEECCCCHHHHhhccHHHHH--HHhCCceeccCCcCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHccCCCHHHHHHH
Confidence 8888887642 2333443 554321 23999999999998887654 66777777777666643233344
Q ss_pred H
Q 019334 265 L 265 (342)
Q Consensus 265 l 265 (342)
+
T Consensus 320 L 320 (450)
T PRK14087 320 V 320 (450)
T ss_pred H
Confidence 3
No 113
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.20 E-value=2.5e-10 Score=117.55 Aligned_cols=171 Identities=13% Similarity=0.233 Sum_probs=109.7
Q ss_pred cccHHHHHHHHHHHHHHHHHhh-cCCCCCeEEEeecCCCCCHHHHHHHHHHHhCC------------------------c
Q 019334 47 YIAPVFMASLLCHIVKNYIAHL-LNVKVPLILGIWGGKGQGKSFQTELIFQAMGI------------------------E 101 (342)
Q Consensus 47 y~~~~f~d~l~~hi~K~~l~~~-~~~k~PlglgL~GPPG~GKTllaravA~~~g~------------------------~ 101 (342)
|=|..|.|.++..-+...+... ..-+.|..++++||||+|||++|+++|+.+.+ .
T Consensus 7 yRP~~f~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~D 86 (491)
T PRK14964 7 YRPSSFKDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPD 86 (491)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCC
Confidence 4445555555444333344332 22377889999999999999999999997643 3
Q ss_pred eEEeecccccccccCCcHHHHHHHHHHHHHhhhhcCCceEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccc
Q 019334 102 PVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVS 181 (342)
Q Consensus 102 ~i~vs~~eL~s~~~GEsEr~iR~~F~~A~e~~~~~~~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~ 181 (342)
++.+++++ ..+-..||++...+. .....++..|++|||+|.+.. . -...|+..+.+|
T Consensus 87 v~eidaas------~~~vddIR~Iie~~~-~~P~~~~~KVvIIDEah~Ls~-----------~-A~NaLLK~LEeP---- 143 (491)
T PRK14964 87 VIEIDAAS------NTSVDDIKVILENSC-YLPISSKFKVYIIDEVHMLSN-----------S-AFNALLKTLEEP---- 143 (491)
T ss_pred EEEEeccc------CCCHHHHHHHHHHHH-hccccCCceEEEEeChHhCCH-----------H-HHHHHHHHHhCC----
Confidence 35555542 123456888876653 333346788999999987631 1 123455555532
Q ss_pred cCccccccCCCCCccEEEeeCCCCCCccCCCCCCCCcceec-CCCHHHHHHHHHHHhhcCC--CCHHHHHHHhh
Q 019334 182 IGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYW-QPNLEDILNIVHRMYEKDG--ITKDEVGSIVK 252 (342)
Q Consensus 182 l~g~~~~~~~~~~V~VIatTNr~~~LdpaLlRpGRfD~~i~-vP~~~~R~~Il~~~~~~~~--~s~~di~~lvd 252 (342)
.+.+.+|.+||.++.|++.++- |.-.+-+ .++.++..+.++.+.+..+ ++.+.++.++.
T Consensus 144 ----------p~~v~fIlatte~~Kl~~tI~S--Rc~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~ 205 (491)
T PRK14964 144 ----------APHVKFILATTEVKKIPVTIIS--RCQRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAE 205 (491)
T ss_pred ----------CCCeEEEEEeCChHHHHHHHHH--hheeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 3567777788888999988776 4434333 3688888888887777665 45555555554
No 114
>PRK05642 DNA replication initiation factor; Validated
Probab=99.20 E-value=2.3e-10 Score=106.25 Aligned_cols=161 Identities=14% Similarity=0.172 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHHhhcCCCCCeEEEeecCCCCCHHHHHHHHHHHh---CCceEEeecccccccccCCcHHHHHHHHHHHHH
Q 019334 55 SLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAM---GIEPVIMSAGELESERAGEPGKLIRERYRTASQ 131 (342)
Q Consensus 55 ~l~~hi~K~~l~~~~~~k~PlglgL~GPPG~GKTllaravA~~~---g~~~i~vs~~eL~s~~~GEsEr~iR~~F~~A~e 131 (342)
..+...+++|.....+ ..+..+.||||+|||||.|++|+|+++ |...+.++..++.+.. ..+.+.|+
T Consensus 27 ~~a~~~~~~~~~~~~~-~~~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~~-----~~~~~~~~---- 96 (234)
T PRK05642 27 AAALGYVERLCEADAG-WTESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRG-----PELLDNLE---- 96 (234)
T ss_pred HHHHHHHHHHhhcccc-CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhhh-----HHHHHhhh----
Confidence 4566777777552222 234678999999999999999998653 6788889998887531 12222232
Q ss_pred hhhhcCCceEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCC-CCCC---
Q 019334 132 VVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGND-FSTI--- 207 (342)
Q Consensus 132 ~~~~~~~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr-~~~L--- 207 (342)
...+|+||||+...++.. .+ ..|.++++. . . .++.++|.|+|. |+.+
T Consensus 97 ------~~d~LiiDDi~~~~~~~~-------~~---~~Lf~l~n~---------~---~-~~g~~ilits~~~p~~l~~~ 147 (234)
T PRK05642 97 ------QYELVCLDDLDVIAGKAD-------WE---EALFHLFNR---------L---R-DSGRRLLLAASKSPRELPIK 147 (234)
T ss_pred ------hCCEEEEechhhhcCChH-------HH---HHHHHHHHH---------H---H-hcCCEEEEeCCCCHHHcCcc
Confidence 135889999998765321 11 234444331 0 0 123445665554 4433
Q ss_pred ccCCCCCCCCcc--ee--cCCCHHHHHHHHHHHhhcC--CCCHHHHHHHhhcCCC
Q 019334 208 YAPLIRDGRMEK--FY--WQPNLEDILNIVHRMYEKD--GITKDEVGSIVKTFPN 256 (342)
Q Consensus 208 dpaLlRpGRfD~--~i--~vP~~~~R~~Il~~~~~~~--~~s~~di~~lvd~f~~ 256 (342)
.|.|+- ||-- .+ ..|+.++|..|++...... .++.+-++.|+..+++
T Consensus 148 ~~~L~S--Rl~~gl~~~l~~~~~e~~~~il~~ka~~~~~~l~~ev~~~L~~~~~~ 200 (234)
T PRK05642 148 LPDLKS--RLTLALVFQMRGLSDEDKLRALQLRASRRGLHLTDEVGHFILTRGTR 200 (234)
T ss_pred CccHHH--HHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC
Confidence 455655 6643 12 2379999999999665554 3677777777766655
No 115
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.20 E-value=4.1e-10 Score=114.44 Aligned_cols=173 Identities=13% Similarity=0.215 Sum_probs=110.9
Q ss_pred cccHHHHHHHHHHHHHHHHHhhc-CCCCCeEEEeecCCCCCHHHHHHHHHHHhCCc------------------------
Q 019334 47 YIAPVFMASLLCHIVKNYIAHLL-NVKVPLILGIWGGKGQGKSFQTELIFQAMGIE------------------------ 101 (342)
Q Consensus 47 y~~~~f~d~l~~hi~K~~l~~~~-~~k~PlglgL~GPPG~GKTllaravA~~~g~~------------------------ 101 (342)
|=|.+|-|.+|..-++.++.... .-+.|..+++|||||||||++|+++|+.+.+.
T Consensus 11 yRP~~~~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~ 90 (451)
T PRK06305 11 YRPQTFSEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSL 90 (451)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCC
Confidence 45566666665555555554422 23678899999999999999999999988653
Q ss_pred -eEEeecccccccccCCcHHHHHHHHHHHHHhhhhcCCceEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCcc
Q 019334 102 -PVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRV 180 (342)
Q Consensus 102 -~i~vs~~eL~s~~~GEsEr~iR~~F~~A~e~~~~~~~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v 180 (342)
++.+++.+- . +=..+|++-+... .....+...|++|||+|.... . ....|+..+++|
T Consensus 91 d~~~i~g~~~----~--gid~ir~i~~~l~-~~~~~~~~kvvIIdead~lt~-----------~-~~n~LLk~lEep--- 148 (451)
T PRK06305 91 DVLEIDGASH----R--GIEDIRQINETVL-FTPSKSRYKIYIIDEVHMLTK-----------E-AFNSLLKTLEEP--- 148 (451)
T ss_pred ceEEeecccc----C--CHHHHHHHHHHHH-hhhhcCCCEEEEEecHHhhCH-----------H-HHHHHHHHhhcC---
Confidence 233332211 1 1234555443332 222246789999999987631 1 233566655532
Q ss_pred ccCccccccCCCCCccEEEeeCCCCCCccCCCCCCCCcceec-CCCHHHHHHHHHHHhhcCC--CCHHHHHHHhhcC
Q 019334 181 SIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYW-QPNLEDILNIVHRMYEKDG--ITKDEVGSIVKTF 254 (342)
Q Consensus 181 ~l~g~~~~~~~~~~V~VIatTNr~~~LdpaLlRpGRfD~~i~-vP~~~~R~~Il~~~~~~~~--~s~~di~~lvd~f 254 (342)
...+.+|.+||++..|.++|+. |...+-+ .|+.++-...++...+..+ ++.+.++.++...
T Consensus 149 -----------~~~~~~Il~t~~~~kl~~tI~s--Rc~~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s 212 (451)
T PRK06305 149 -----------PQHVKFFLATTEIHKIPGTILS--RCQKMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAA 212 (451)
T ss_pred -----------CCCceEEEEeCChHhcchHHHH--hceEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 3467777788889999999887 5554434 3788888888887777665 5666666666433
No 116
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.20 E-value=1.5e-11 Score=118.72 Aligned_cols=146 Identities=16% Similarity=0.094 Sum_probs=91.5
Q ss_pred eEEEeecCCCCCHHHHHHHHHHHhCCceEEeeccccccc--ccCCcHHHHHHH-HHHHHHhhhhc-CCc--eEEEeeccc
Q 019334 75 LILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESE--RAGEPGKLIRER-YRTASQVVQNQ-GKM--SCLMINDID 148 (342)
Q Consensus 75 lglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~--~~GEsEr~iR~~-F~~A~e~~~~~-~~P--cILfIDEID 148 (342)
..++|-||||||||++|+++|..+|.+|+++...+-+.. ..|...-..+.. ... .+..+-- -.. +|+|+|||+
T Consensus 44 ~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~-~~~~~gpl~~~~~~ill~DEIn 122 (329)
T COG0714 44 GHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGE-FRFVPGPLFAAVRVILLLDEIN 122 (329)
T ss_pred CCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCe-EEEecCCcccccceEEEEeccc
Confidence 458899999999999999999999999999998643332 233332221100 000 0000000 001 599999999
Q ss_pred ccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeC-----CCCCCccCCCCCCCCcceecC
Q 019334 149 AGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGN-----DFSTIYAPLIRDGRMEKFYWQ 223 (342)
Q Consensus 149 Ag~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTN-----r~~~LdpaLlRpGRfD~~i~v 223 (342)
..-+ .+...|+..|+. ..|.+++.-. .+...+..||+|.| .-..|+.|+++ ||--.+|+
T Consensus 123 ra~p------------~~q~aLl~~l~e-~~vtv~~~~~-~~~~~~f~viaT~Np~e~~g~~~l~eA~ld--Rf~~~~~v 186 (329)
T COG0714 123 RAPP------------EVQNALLEALEE-RQVTVPGLTT-IRLPPPFIVIATQNPGEYEGTYPLPEALLD--RFLLRIYV 186 (329)
T ss_pred cCCH------------HHHHHHHHHHhC-cEEEECCcCC-cCCCCCCEEEEccCccccCCCcCCCHHHHh--hEEEEEec
Confidence 8653 355567777763 3455555210 22235677888889 77788999999 99655554
Q ss_pred --C-CHHHHHHHHHHHh
Q 019334 224 --P-NLEDILNIVHRMY 237 (342)
Q Consensus 224 --P-~~~~R~~Il~~~~ 237 (342)
| ..++...|+....
T Consensus 187 ~yp~~~~e~~~i~~~~~ 203 (329)
T COG0714 187 DYPDSEEEERIILARVG 203 (329)
T ss_pred CCCCchHHHHHHHHhCc
Confidence 6 6666666665443
No 117
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.20 E-value=3.1e-10 Score=123.00 Aligned_cols=171 Identities=13% Similarity=0.209 Sum_probs=103.6
Q ss_pred cccHHHHHHHHHHHHHHHHHh-hcCCCCCeEEEeecCCCCCHHHHHHHHHHHhCCc------------------------
Q 019334 47 YIAPVFMASLLCHIVKNYIAH-LLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIE------------------------ 101 (342)
Q Consensus 47 y~~~~f~d~l~~hi~K~~l~~-~~~~k~PlglgL~GPPG~GKTllaravA~~~g~~------------------------ 101 (342)
|-|..|.|+++...+++.|.. +..-+.+..+|||||+|||||++|+++|+.+.+.
T Consensus 9 yRP~~f~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~ 88 (824)
T PRK07764 9 YRPATFAEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGS 88 (824)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCC
Confidence 444455555543322222322 2234788899999999999999999999999762
Q ss_pred --eEEeecccccccccCCcHHHHHHHHHHHHHhhhhcCCceEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCc
Q 019334 102 --PVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTR 179 (342)
Q Consensus 102 --~i~vs~~eL~s~~~GEsEr~iR~~F~~A~e~~~~~~~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~ 179 (342)
++.+++++- -+=..||++-..+. .....++-.|+||||+|.+.. + -...|+..+.+|
T Consensus 89 ~dv~eidaas~------~~Vd~iR~l~~~~~-~~p~~~~~KV~IIDEad~lt~-----------~-a~NaLLK~LEEp-- 147 (824)
T PRK07764 89 LDVTEIDAASH------GGVDDARELRERAF-FAPAESRYKIFIIDEAHMVTP-----------Q-GFNALLKIVEEP-- 147 (824)
T ss_pred CcEEEeccccc------CCHHHHHHHHHHHH-hchhcCCceEEEEechhhcCH-----------H-HHHHHHHHHhCC--
Confidence 222322211 01234555433332 222246678999999999841 1 233577666642
Q ss_pred cccCccccccCCCCCccEEEeeCCCCCCccCCCCCCCCcceec-CCCHHHHHHHHHHHhhcCCC--CHHHHHHHhh
Q 019334 180 VSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYW-QPNLEDILNIVHRMYEKDGI--TKDEVGSIVK 252 (342)
Q Consensus 180 v~l~g~~~~~~~~~~V~VIatTNr~~~LdpaLlRpGRfD~~i~-vP~~~~R~~Il~~~~~~~~~--s~~di~~lvd 252 (342)
...+.+|.+||.++.|.+.|+= |.-.+-+ .++.++-.++|+.+++.+++ +.+.+..++.
T Consensus 148 ------------P~~~~fIl~tt~~~kLl~TIrS--Rc~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~ 209 (824)
T PRK07764 148 ------------PEHLKFIFATTEPDKVIGTIRS--RTHHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIR 209 (824)
T ss_pred ------------CCCeEEEEEeCChhhhhHHHHh--heeEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 3567677777888999988765 4433333 36778888888877776665 4444444443
No 118
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.20 E-value=2.2e-10 Score=120.30 Aligned_cols=150 Identities=16% Similarity=0.263 Sum_probs=99.8
Q ss_pred CCCCeEEEeecCCCCCHHHHHHHHHHHhCC------------------------ceEEeecccccccccCCcHHHHHHHH
Q 019334 71 VKVPLILGIWGGKGQGKSFQTELIFQAMGI------------------------EPVIMSAGELESERAGEPGKLIRERY 126 (342)
Q Consensus 71 ~k~PlglgL~GPPG~GKTllaravA~~~g~------------------------~~i~vs~~eL~s~~~GEsEr~iR~~F 126 (342)
-+.|..+++|||||||||++|+++|+.+.+ .++.++++. .-+-..||++.
T Consensus 35 ~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~~~~h~DiieIdaas------~igVd~IReIi 108 (605)
T PRK05896 35 NKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINTNQSVDIVELDAAS------NNGVDEIRNII 108 (605)
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHHcCCCCceEEecccc------ccCHHHHHHHH
Confidence 477899999999999999999999999864 223333321 01233578777
Q ss_pred HHHHHhhhhcCCceEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCC
Q 019334 127 RTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFST 206 (342)
Q Consensus 127 ~~A~e~~~~~~~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~~~ 206 (342)
..+... ...+.-.|++|||+|..-. + ....|+..++.| ...+.+|.+|+.++.
T Consensus 109 ~~~~~~-P~~~~~KVIIIDEad~Lt~-----------~-A~NaLLKtLEEP--------------p~~tvfIL~Tt~~~K 161 (605)
T PRK05896 109 DNINYL-PTTFKYKVYIIDEAHMLST-----------S-AWNALLKTLEEP--------------PKHVVFIFATTEFQK 161 (605)
T ss_pred HHHHhc-hhhCCcEEEEEechHhCCH-----------H-HHHHHHHHHHhC--------------CCcEEEEEECCChHh
Confidence 665432 2234456999999997631 1 123566655532 345667777788999
Q ss_pred CccCCCCCCCCcceec-CCCHHHHHHHHHHHhhcCC--CCHHHHHHHhhcCC
Q 019334 207 IYAPLIRDGRMEKFYW-QPNLEDILNIVHRMYEKDG--ITKDEVGSIVKTFP 255 (342)
Q Consensus 207 LdpaLlRpGRfD~~i~-vP~~~~R~~Il~~~~~~~~--~s~~di~~lvd~f~ 255 (342)
|+++++. |...+-+ .|+.++-...|+..+...+ ++.+.++.++....
T Consensus 162 Ll~TI~S--Rcq~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS~ 211 (605)
T PRK05896 162 IPLTIIS--RCQRYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLAD 211 (605)
T ss_pred hhHHHHh--hhhhcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 9999887 5555434 3788888888887776654 66766666664433
No 119
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.20 E-value=3e-10 Score=123.51 Aligned_cols=180 Identities=13% Similarity=0.204 Sum_probs=107.9
Q ss_pred HHHHhhhhhhhhcccccccHHHHHHHHHHHHHHHHHhhcCCCCCeEEEeecCCCCCHHHHHHHHHHHhCCceE-E-----
Q 019334 31 YRQKVTRSFEYLQGDYYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPV-I----- 104 (342)
Q Consensus 31 ~~~~~~r~f~~~~~~~y~~~~f~d~l~~hi~K~~l~~~~~~k~PlglgL~GPPG~GKTllaravA~~~g~~~i-~----- 104 (342)
||.++-++|.+++|-.++- +.+||++. .-+.|-.++||||||||||++|+++|+.+++.-. .
T Consensus 7 aeKyRP~tFddIIGQe~Iv---------~~LknaI~---~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg 74 (944)
T PRK14949 7 ARKWRPATFEQMVGQSHVL---------HALTNALT---QQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCG 74 (944)
T ss_pred HHHhCCCCHHHhcCcHHHH---------HHHHHHHH---hCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCC
Confidence 3344445555555443332 22455554 2377888999999999999999999999987411 0
Q ss_pred -------ee---cccccccccC---CcHHHHHHHHHHHHHhhhhcCCceEEEeecccccCCCCCCCcccchhHHHHHHHH
Q 019334 105 -------MS---AGELESERAG---EPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLM 171 (342)
Q Consensus 105 -------vs---~~eL~s~~~G---EsEr~iR~~F~~A~e~~~~~~~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl 171 (342)
+. ..+++. +-+ .+-..||++...+... ...++-.|+||||+|..-. .....||
T Consensus 75 ~C~sC~~i~~g~~~DviE-idAas~~kVDdIReLie~v~~~-P~~gk~KViIIDEAh~LT~------------eAqNALL 140 (944)
T PRK14949 75 VCSSCVEIAQGRFVDLIE-VDAASRTKVDDTRELLDNVQYR-PSRGRFKVYLIDEVHMLSR------------SSFNALL 140 (944)
T ss_pred CchHHHHHhcCCCceEEE-eccccccCHHHHHHHHHHHHhh-hhcCCcEEEEEechHhcCH------------HHHHHHH
Confidence 00 011110 111 1234567766555322 2245667999999999831 1233455
Q ss_pred hhcCCCCccccCccccccCCCCCccEEEeeCCCCCCccCCCCCCCCcceecC-CCHHHHHHHHHHHhhcCC--CCHHHHH
Q 019334 172 NLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQ-PNLEDILNIVHRMYEKDG--ITKDEVG 248 (342)
Q Consensus 172 ~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~~~LdpaLlRpGRfD~~i~v-P~~~~R~~Il~~~~~~~~--~s~~di~ 248 (342)
..|. ++ ..++.+|.+||.+..|.++++- |.-++-+- ++.++-.+.|+.++...+ ++.+.+.
T Consensus 141 KtLE-------------EP-P~~vrFILaTTe~~kLl~TIlS--RCq~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~ 204 (944)
T PRK14949 141 KTLE-------------EP-PEHVKFLLATTDPQKLPVTVLS--RCLQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALT 204 (944)
T ss_pred HHHh-------------cc-CCCeEEEEECCCchhchHHHHH--hheEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 5444 22 4567777778888999888766 66444443 578888888877666554 3444555
Q ss_pred HHhh
Q 019334 249 SIVK 252 (342)
Q Consensus 249 ~lvd 252 (342)
.++.
T Consensus 205 lIA~ 208 (944)
T PRK14949 205 LLAK 208 (944)
T ss_pred HHHH
Confidence 5443
No 120
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.19 E-value=3.6e-10 Score=115.95 Aligned_cols=177 Identities=17% Similarity=0.282 Sum_probs=104.3
Q ss_pred cccHHHHHHHHHHHHHHHHHhh-cCCCCCeEEEeecCCCCCHHHHHHHHHHHhCCc-e------------EEeec---cc
Q 019334 47 YIAPVFMASLLCHIVKNYIAHL-LNVKVPLILGIWGGKGQGKSFQTELIFQAMGIE-P------------VIMSA---GE 109 (342)
Q Consensus 47 y~~~~f~d~l~~hi~K~~l~~~-~~~k~PlglgL~GPPG~GKTllaravA~~~g~~-~------------i~vs~---~e 109 (342)
|-|..|.|.++..-+...+... -.-+.|..+++|||||||||++|+++|+.+.+. . ..+.. ++
T Consensus 10 yRP~~f~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d 89 (486)
T PRK14953 10 YRPKFFKEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPD 89 (486)
T ss_pred hCCCcHHHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCc
Confidence 4455555555443333333322 234678889999999999999999999998751 0 00111 11
Q ss_pred cc--ccccCCcHHHHHHHHHHHHHhhhhcCCceEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCcccc
Q 019334 110 LE--SERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWR 187 (342)
Q Consensus 110 L~--s~~~GEsEr~iR~~F~~A~e~~~~~~~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~ 187 (342)
++ +.-...+-..+|++-+.+. .....++..|++|||+|.... . -...|+..+.+|
T Consensus 90 ~~eidaas~~gvd~ir~I~~~~~-~~P~~~~~KVvIIDEad~Lt~-----------~-a~naLLk~LEep---------- 146 (486)
T PRK14953 90 LIEIDAASNRGIDDIRALRDAVS-YTPIKGKYKVYIIDEAHMLTK-----------E-AFNALLKTLEEP---------- 146 (486)
T ss_pred EEEEeCccCCCHHHHHHHHHHHH-hCcccCCeeEEEEEChhhcCH-----------H-HHHHHHHHHhcC----------
Confidence 11 0001122334666654443 333356788999999997631 1 122455545532
Q ss_pred ccCCCCCccEEEeeCCCCCCccCCCCCCCCcceec-CCCHHHHHHHHHHHhhcCCC--CHHHHHHHhh
Q 019334 188 ESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYW-QPNLEDILNIVHRMYEKDGI--TKDEVGSIVK 252 (342)
Q Consensus 188 ~~~~~~~V~VIatTNr~~~LdpaLlRpGRfD~~i~-vP~~~~R~~Il~~~~~~~~~--s~~di~~lvd 252 (342)
...+.+|.+||+++.|++++.. |.-.+-+ .|+.++...+++.+++..++ +.+.+..++.
T Consensus 147 ----p~~~v~Il~tt~~~kl~~tI~S--Rc~~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~ 208 (486)
T PRK14953 147 ----PPRTIFILCTTEYDKIPPTILS--RCQRFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQ 208 (486)
T ss_pred ----CCCeEEEEEECCHHHHHHHHHH--hceEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 2345566667788899988876 4444333 37889999899887776654 3455555443
No 121
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.18 E-value=4.3e-10 Score=119.03 Aligned_cols=169 Identities=14% Similarity=0.201 Sum_probs=104.8
Q ss_pred ccHHHHHHHHHHHHHHHHHh-hcCCCCCeEEEeecCCCCCHHHHHHHHHHHhCCc------------------------e
Q 019334 48 IAPVFMASLLCHIVKNYIAH-LLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIE------------------------P 102 (342)
Q Consensus 48 ~~~~f~d~l~~hi~K~~l~~-~~~~k~PlglgL~GPPG~GKTllaravA~~~g~~------------------------~ 102 (342)
-|..|.|.+|..-+...|.. +-.-+.|-.+++|||||||||++|+++|+.+.+. +
T Consensus 11 RP~~f~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~~g~~~D~ 90 (647)
T PRK07994 11 RPQTFAEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIEQGRFVDL 90 (647)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHcCCCCCc
Confidence 34444444433333333322 2233788889999999999999999999999883 2
Q ss_pred EEeecccccccccCCcHHHHHHHHHHHHHhhhhcCCceEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCcccc
Q 019334 103 VIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSI 182 (342)
Q Consensus 103 i~vs~~eL~s~~~GEsEr~iR~~F~~A~e~~~~~~~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l 182 (342)
+.+++++ . .+-..+|++-..+.. ....|+--|+||||+|..-. . -...||..+.
T Consensus 91 ieidaas----~--~~VddiR~li~~~~~-~p~~g~~KV~IIDEah~Ls~-----------~-a~NALLKtLE------- 144 (647)
T PRK07994 91 IEIDAAS----R--TKVEDTRELLDNVQY-APARGRFKVYLIDEVHMLSR-----------H-SFNALLKTLE------- 144 (647)
T ss_pred eeecccc----c--CCHHHHHHHHHHHHh-hhhcCCCEEEEEechHhCCH-----------H-HHHHHHHHHH-------
Confidence 3333321 0 123456777655532 22246778999999998741 1 1234554444
Q ss_pred CccccccCCCCCccEEEeeCCCCCCccCCCCCCCCcceecC-CCHHHHHHHHHHHhhcCCC--CHHHHHHHh
Q 019334 183 GQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQ-PNLEDILNIVHRMYEKDGI--TKDEVGSIV 251 (342)
Q Consensus 183 ~g~~~~~~~~~~V~VIatTNr~~~LdpaLlRpGRfD~~i~v-P~~~~R~~Il~~~~~~~~~--s~~di~~lv 251 (342)
++ ..++.+|.+||+++.|.+.++= |.-.+.+- ++.++-.+.|+.++...++ +.+.+..++
T Consensus 145 ------EP-p~~v~FIL~Tt~~~kLl~TI~S--RC~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia 207 (647)
T PRK07994 145 ------EP-PEHVKFLLATTDPQKLPVTILS--RCLQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLA 207 (647)
T ss_pred ------cC-CCCeEEEEecCCccccchHHHh--hheEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 22 4677778888899999988665 65444443 6788888888877765554 444444444
No 122
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.17 E-value=6.7e-10 Score=115.66 Aligned_cols=171 Identities=18% Similarity=0.257 Sum_probs=104.8
Q ss_pred cccHHHHHHHHHHHHHHHHHhh-cCCCCCeEEEeecCCCCCHHHHHHHHHHHhCC------------------------c
Q 019334 47 YIAPVFMASLLCHIVKNYIAHL-LNVKVPLILGIWGGKGQGKSFQTELIFQAMGI------------------------E 101 (342)
Q Consensus 47 y~~~~f~d~l~~hi~K~~l~~~-~~~k~PlglgL~GPPG~GKTllaravA~~~g~------------------------~ 101 (342)
|=|..|-|.+|..-+.+.+... -.-+.|..+++|||||||||++|+++|+.+.+ .
T Consensus 10 yRP~~f~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~d 89 (546)
T PRK14957 10 YRPQSFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFID 89 (546)
T ss_pred HCcCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCc
Confidence 4455566655444333333322 23367888999999999999999999998875 2
Q ss_pred eEEeecccccccccCCcHHHHHHHHHHHHHhhhhcCCceEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccc
Q 019334 102 PVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVS 181 (342)
Q Consensus 102 ~i~vs~~eL~s~~~GEsEr~iR~~F~~A~e~~~~~~~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~ 181 (342)
++.+++.. ..| -..+|++...+.. ....+...|+||||+|.... . ....|+..+.+|
T Consensus 90 lieidaas----~~g--vd~ir~ii~~~~~-~p~~g~~kViIIDEa~~ls~-----------~-a~naLLK~LEep---- 146 (546)
T PRK14957 90 LIEIDAAS----RTG--VEETKEILDNIQY-MPSQGRYKVYLIDEVHMLSK-----------Q-SFNALLKTLEEP---- 146 (546)
T ss_pred eEEeeccc----ccC--HHHHHHHHHHHHh-hhhcCCcEEEEEechhhccH-----------H-HHHHHHHHHhcC----
Confidence 33333221 111 2346677655532 22346678999999988631 1 223555555532
Q ss_pred cCccccccCCCCCccEEEeeCCCCCCccCCCCCCCCcceec-CCCHHHHHHHHHHHhhcCCC--CHHHHHHHhh
Q 019334 182 IGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYW-QPNLEDILNIVHRMYEKDGI--TKDEVGSIVK 252 (342)
Q Consensus 182 l~g~~~~~~~~~~V~VIatTNr~~~LdpaLlRpGRfD~~i~-vP~~~~R~~Il~~~~~~~~~--s~~di~~lvd 252 (342)
...+.+|.+|+++..+.++++- |.-.+-+ .++.++-...|+..++..++ +.+.+..++.
T Consensus 147 ----------p~~v~fIL~Ttd~~kil~tI~S--Rc~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~ 208 (546)
T PRK14957 147 ----------PEYVKFILATTDYHKIPVTILS--RCIQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAY 208 (546)
T ss_pred ----------CCCceEEEEECChhhhhhhHHH--heeeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 3467677777788989988654 5544333 36788877788777766554 4554555543
No 123
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.17 E-value=2.4e-10 Score=124.15 Aligned_cols=114 Identities=17% Similarity=0.193 Sum_probs=74.5
Q ss_pred CCCCeE-EEeecCCCCCHHHHHHHHHHHh---CCceEEeecccccc------------cccCCcHHHHHHHHHHHHHhhh
Q 019334 71 VKVPLI-LGIWGGKGQGKSFQTELIFQAM---GIEPVIMSAGELES------------ERAGEPGKLIRERYRTASQVVQ 134 (342)
Q Consensus 71 ~k~Plg-lgL~GPPG~GKTllaravA~~~---g~~~i~vs~~eL~s------------~~~GEsEr~iR~~F~~A~e~~~ 134 (342)
...|++ ++++||||||||.+|+++|..+ .-.++.++.+++.. +|+|..+.- .+.+|..
T Consensus 592 ~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~~~l~g~~~gyvg~~~~g---~L~~~v~--- 665 (852)
T TIGR03345 592 PRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTVSRLKGSPPGYVGYGEGG---VLTEAVR--- 665 (852)
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhhccccCCCCCcccccccc---hHHHHHH---
Confidence 356776 7899999999999999999998 56889999887643 255543321 1222221
Q ss_pred hcCCceEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCC
Q 019334 135 NQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFST 206 (342)
Q Consensus 135 ~~~~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~~~ 206 (342)
+...|||+|||||+.- ..+...|+.++|.- .+. ++.-...+ -.++.||+|||....
T Consensus 666 -~~p~svvllDEieka~------------~~v~~~Llq~ld~g-~l~-d~~Gr~vd-~~n~iiI~TSNlg~~ 721 (852)
T TIGR03345 666 -RKPYSVVLLDEVEKAH------------PDVLELFYQVFDKG-VME-DGEGREID-FKNTVILLTSNAGSD 721 (852)
T ss_pred -hCCCcEEEEechhhcC------------HHHHHHHHHHhhcc-eee-cCCCcEEe-ccccEEEEeCCCchH
Confidence 3457999999999642 23566788888841 110 00001112 357999999997543
No 124
>PRK08727 hypothetical protein; Validated
Probab=99.16 E-value=2e-10 Score=106.47 Aligned_cols=144 Identities=10% Similarity=0.166 Sum_probs=92.9
Q ss_pred CCeEEEeecCCCCCHHHHHHHHHHH---hCCceEEeecccccccccCCcHHHHHHHHHHHHHhhhhcCCceEEEeecccc
Q 019334 73 VPLILGIWGGKGQGKSFQTELIFQA---MGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDA 149 (342)
Q Consensus 73 ~PlglgL~GPPG~GKTllaravA~~---~g~~~i~vs~~eL~s~~~GEsEr~iR~~F~~A~e~~~~~~~PcILfIDEIDA 149 (342)
....+.||||+|||||.++.|++.+ -|...+.++..++.. .+.+.++.. .+..+|+|||||.
T Consensus 40 ~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~~--------~~~~~~~~l-------~~~dlLiIDDi~~ 104 (233)
T PRK08727 40 SSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAAG--------RLRDALEAL-------EGRSLVALDGLES 104 (233)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhhh--------hHHHHHHHH-------hcCCEEEEeCccc
Confidence 3455999999999999999999654 466667777655432 233333222 2367999999998
Q ss_pred cCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCC-CCCC---ccCCCCCCCCcc--eec-
Q 019334 150 GLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGND-FSTI---YAPLIRDGRMEK--FYW- 222 (342)
Q Consensus 150 g~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr-~~~L---dpaLlRpGRfD~--~i~- 222 (342)
..+... .+. .|.++++. .. ..+..||+|+|. |+.+ +|.|+. ||.. .+.
T Consensus 105 l~~~~~-------~~~---~lf~l~n~------------~~-~~~~~vI~ts~~~p~~l~~~~~dL~S--Rl~~~~~~~l 159 (233)
T PRK08727 105 IAGQRE-------DEV---ALFDFHNR------------AR-AAGITLLYTARQMPDGLALVLPDLRS--RLAQCIRIGL 159 (233)
T ss_pred ccCChH-------HHH---HHHHHHHH------------HH-HcCCeEEEECCCChhhhhhhhHHHHH--HHhcCceEEe
Confidence 764321 121 22233221 00 235668888774 4444 677876 6643 222
Q ss_pred -CCCHHHHHHHHHHHhhcC--CCCHHHHHHHhhcCCC
Q 019334 223 -QPNLEDILNIVHRMYEKD--GITKDEVGSIVKTFPN 256 (342)
Q Consensus 223 -vP~~~~R~~Il~~~~~~~--~~s~~di~~lvd~f~~ 256 (342)
.|+.++|.+|++.+.... .++.+.+..|+..+++
T Consensus 160 ~~~~~e~~~~iL~~~a~~~~l~l~~e~~~~La~~~~r 196 (233)
T PRK08727 160 PVLDDVARAAVLRERAQRRGLALDEAAIDWLLTHGER 196 (233)
T ss_pred cCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC
Confidence 389999999999866544 4678888888877665
No 125
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=1.1e-10 Score=114.86 Aligned_cols=101 Identities=18% Similarity=0.217 Sum_probs=82.5
Q ss_pred EEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccc-cccCCcHHHHHHHHHHHHHhhhhcCCceEEEeecccccCCCC
Q 019334 76 ILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELES-ERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRF 154 (342)
Q Consensus 76 glgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s-~~~GEsEr~iR~~F~~A~e~~~~~~~PcILfIDEIDAg~~r~ 154 (342)
-++|-||.|||||+||+.+|+.+++||-.-++..|-. +|+||-=.+|-...-.|++.--.+..--||+|||||+++.+.
T Consensus 99 NILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIarkS 178 (408)
T COG1219 99 NILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKS 178 (408)
T ss_pred cEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccC
Confidence 5788899999999999999999999999999999976 799998888776666665432223456899999999999766
Q ss_pred CCCc--ccchhHHHHHHHHhhcCC
Q 019334 155 GNTQ--MTVNNQIVVGTLMNLSDN 176 (342)
Q Consensus 155 ~~t~--~~v~~q~V~~tLl~llD~ 176 (342)
++.+ .+|+..-|++.||.++.|
T Consensus 179 eN~SITRDVSGEGVQQALLKiiEG 202 (408)
T COG1219 179 ENPSITRDVSGEGVQQALLKIIEG 202 (408)
T ss_pred CCCCcccccCchHHHHHHHHHHcC
Confidence 5443 356677799999999986
No 126
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.16 E-value=4.6e-10 Score=120.01 Aligned_cols=176 Identities=14% Similarity=0.229 Sum_probs=106.8
Q ss_pred cccHHHHHHHHHHHHHHHHHhh-cCCCCCeEEEeecCCCCCHHHHHHHHHHHhCCceEEe-------------ecccccc
Q 019334 47 YIAPVFMASLLCHIVKNYIAHL-LNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIM-------------SAGELES 112 (342)
Q Consensus 47 y~~~~f~d~l~~hi~K~~l~~~-~~~k~PlglgL~GPPG~GKTllaravA~~~g~~~i~v-------------s~~eL~s 112 (342)
|-|..|.|.+|..-+...+... -.-+.|..+++|||||||||++|+++|+.+.+.--.. ...+++.
T Consensus 12 yRP~~f~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvie 91 (725)
T PRK07133 12 YRPKTFDDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDIIE 91 (725)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEEE
Confidence 3344555554433333333221 1237788999999999999999999999987631100 0011111
Q ss_pred --cccCCcHHHHHHHHHHHHHhhhhcCCceEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccC
Q 019334 113 --ERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESD 190 (342)
Q Consensus 113 --~~~GEsEr~iR~~F~~A~e~~~~~~~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~ 190 (342)
+-...+-..||++.+.+.. .+..+...|++|||+|.... . ....|+..|.. +
T Consensus 92 idaasn~~vd~IReLie~~~~-~P~~g~~KV~IIDEa~~LT~-----------~-A~NALLKtLEE-------------P 145 (725)
T PRK07133 92 MDAASNNGVDEIRELIENVKN-LPTQSKYKIYIIDEVHMLSK-----------S-AFNALLKTLEE-------------P 145 (725)
T ss_pred EeccccCCHHHHHHHHHHHHh-chhcCCCEEEEEEChhhCCH-----------H-HHHHHHHHhhc-------------C
Confidence 0001234568888866643 33346778999999998642 1 23356655553 2
Q ss_pred CCCCccEEEeeCCCCCCccCCCCCCCCcceecC-CCHHHHHHHHHHHhhcCCC--CHHHHHHHh
Q 019334 191 ITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQ-PNLEDILNIVHRMYEKDGI--TKDEVGSIV 251 (342)
Q Consensus 191 ~~~~V~VIatTNr~~~LdpaLlRpGRfD~~i~v-P~~~~R~~Il~~~~~~~~~--s~~di~~lv 251 (342)
...+.+|.+|+.++.|+++++. |.-++-+. |+.++-..+|+..+...++ +.+.+..++
T Consensus 146 -P~~tifILaTte~~KLl~TI~S--Rcq~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA 206 (725)
T PRK07133 146 -PKHVIFILATTEVHKIPLTILS--RVQRFNFRRISEDEIVSRLEFILEKENISYEKNALKLIA 206 (725)
T ss_pred -CCceEEEEEcCChhhhhHHHHh--hceeEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 3466667777889999999877 55444443 6888888888877766654 333344444
No 127
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.16 E-value=4.5e-10 Score=117.24 Aligned_cols=174 Identities=16% Similarity=0.306 Sum_probs=107.8
Q ss_pred HHHHhhhhhhhhcccccccHHHHHHHHHHHHHHHHHhhcCCCCCeEEEeecCCCCCHHHHHHHHHHHhCCc---------
Q 019334 31 YRQKVTRSFEYLQGDYYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIE--------- 101 (342)
Q Consensus 31 ~~~~~~r~f~~~~~~~y~~~~f~d~l~~hi~K~~l~~~~~~k~PlglgL~GPPG~GKTllaravA~~~g~~--------- 101 (342)
||.++-++|.+++|-.++. ..+++++. .-+.|..+++|||||||||++|+++|+.+.+.
T Consensus 7 ~~k~RP~~f~~iiGq~~v~---------~~L~~~i~---~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~ 74 (576)
T PRK14965 7 ARKYRPQTFSDLTGQEHVS---------RTLQNAID---TGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCN 74 (576)
T ss_pred HHHhCCCCHHHccCcHHHH---------HHHHHHHH---cCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCC
Confidence 4445556666666543332 33344443 23788999999999999999999999998753
Q ss_pred ---------------eEEeecccccccccCCcHHHHHHHHHHHHHhhhhcCCceEEEeecccccCCCCCCCcccchhHHH
Q 019334 102 ---------------PVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIV 166 (342)
Q Consensus 102 ---------------~i~vs~~eL~s~~~GEsEr~iR~~F~~A~e~~~~~~~PcILfIDEIDAg~~r~~~t~~~v~~q~V 166 (342)
++.+++.+ ..+-..||++...+. .....+.-.|++|||+|.... . -
T Consensus 75 ~c~~c~~i~~g~~~d~~eid~~s------~~~v~~ir~l~~~~~-~~p~~~~~KVvIIdev~~Lt~-----------~-a 135 (576)
T PRK14965 75 VCPPCVEITEGRSVDVFEIDGAS------NTGVDDIRELRENVK-YLPSRSRYKIFIIDEVHMLST-----------N-A 135 (576)
T ss_pred ccHHHHHHhcCCCCCeeeeeccC------ccCHHHHHHHHHHHH-hccccCCceEEEEEChhhCCH-----------H-H
Confidence 23333221 123456787776553 222234557999999987631 1 1
Q ss_pred HHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCCccCCCCCCCCcceec-CCCHHHHHHHHHHHhhcCC--CC
Q 019334 167 VGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYW-QPNLEDILNIVHRMYEKDG--IT 243 (342)
Q Consensus 167 ~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~~~LdpaLlRpGRfD~~i~-vP~~~~R~~Il~~~~~~~~--~s 243 (342)
...|+..|..| ..++.+|.+||.++.|+++++- |.-.+-+ -++.++-...|+.+++..+ ++
T Consensus 136 ~naLLk~LEep--------------p~~~~fIl~t~~~~kl~~tI~S--Rc~~~~f~~l~~~~i~~~L~~i~~~egi~i~ 199 (576)
T PRK14965 136 FNALLKTLEEP--------------PPHVKFIFATTEPHKVPITILS--RCQRFDFRRIPLQKIVDRLRYIADQEGISIS 199 (576)
T ss_pred HHHHHHHHHcC--------------CCCeEEEEEeCChhhhhHHHHH--hhhhhhcCCCCHHHHHHHHHHHHHHhCCCCC
Confidence 23566555532 4577788888999999999774 4433223 3567776777766666555 34
Q ss_pred HHHHHHHh
Q 019334 244 KDEVGSIV 251 (342)
Q Consensus 244 ~~di~~lv 251 (342)
.+.+..++
T Consensus 200 ~~al~~la 207 (576)
T PRK14965 200 DAALALVA 207 (576)
T ss_pred HHHHHHHH
Confidence 55555444
No 128
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.15 E-value=7.6e-10 Score=116.71 Aligned_cols=179 Identities=12% Similarity=0.219 Sum_probs=111.0
Q ss_pred HHHHhhhhhhhhcccccccHHHHHHHHHHHHHHHHHhhcCCCCCeEEEeecCCCCCHHHHHHHHHHHhCCc---------
Q 019334 31 YRQKVTRSFEYLQGDYYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIE--------- 101 (342)
Q Consensus 31 ~~~~~~r~f~~~~~~~y~~~~f~d~l~~hi~K~~l~~~~~~k~PlglgL~GPPG~GKTllaravA~~~g~~--------- 101 (342)
+|-++-++|.+++|-.+ ....+++++. .-+.|-.+++|||+|||||++|+++|+.+.+.
T Consensus 7 a~KyRP~~f~dviGQe~---------vv~~L~~~l~---~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~ 74 (618)
T PRK14951 7 ARKYRPRSFSEMVGQEH---------VVQALTNALT---QQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGIT 74 (618)
T ss_pred HHHHCCCCHHHhcCcHH---------HHHHHHHHHH---cCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCC
Confidence 34444556666654222 2234555554 34788899999999999999999999998762
Q ss_pred --------------------eEEeecccccccccCCcHHHHHHHHHHHHHhhhhcCCceEEEeecccccCCCCCCCcccc
Q 019334 102 --------------------PVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTV 161 (342)
Q Consensus 102 --------------------~i~vs~~eL~s~~~GEsEr~iR~~F~~A~e~~~~~~~PcILfIDEIDAg~~r~~~t~~~v 161 (342)
++.+++++ ..+=..||++.+.+. .....++-.|++|||+|....
T Consensus 75 ~~pCg~C~~C~~i~~g~h~D~~eldaas------~~~Vd~iReli~~~~-~~p~~g~~KV~IIDEvh~Ls~--------- 138 (618)
T PRK14951 75 ATPCGVCQACRDIDSGRFVDYTELDAAS------NRGVDEVQQLLEQAV-YKPVQGRFKVFMIDEVHMLTN--------- 138 (618)
T ss_pred CCCCCccHHHHHHHcCCCCceeecCccc------ccCHHHHHHHHHHHH-hCcccCCceEEEEEChhhCCH---------
Confidence 22332221 112235777776553 222234557999999999742
Q ss_pred hhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCCccCCCCCCCCcceecC-CCHHHHHHHHHHHhhcC
Q 019334 162 NNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQ-PNLEDILNIVHRMYEKD 240 (342)
Q Consensus 162 ~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~~~LdpaLlRpGRfD~~i~v-P~~~~R~~Il~~~~~~~ 240 (342)
.- ...|+..+.. . ...+.+|.+||+++.|.+.++- |.-.+-+- ++.++-.+.|+.++...
T Consensus 139 --~a-~NaLLKtLEE-------------P-P~~~~fIL~Ttd~~kil~TIlS--Rc~~~~f~~Ls~eei~~~L~~i~~~e 199 (618)
T PRK14951 139 --TA-FNAMLKTLEE-------------P-PEYLKFVLATTDPQKVPVTVLS--RCLQFNLRPMAPETVLEHLTQVLAAE 199 (618)
T ss_pred --HH-HHHHHHhccc-------------C-CCCeEEEEEECCchhhhHHHHH--hceeeecCCCCHHHHHHHHHHHHHHc
Confidence 11 2235544442 2 3567777777889999888555 55444443 67888888888877776
Q ss_pred CC--CHHHHHHHhhcCCC
Q 019334 241 GI--TKDEVGSIVKTFPN 256 (342)
Q Consensus 241 ~~--s~~di~~lvd~f~~ 256 (342)
++ +.+.+..++....|
T Consensus 200 gi~ie~~AL~~La~~s~G 217 (618)
T PRK14951 200 NVPAEPQALRLLARAARG 217 (618)
T ss_pred CCCCCHHHHHHHHHHcCC
Confidence 64 45556666654333
No 129
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.14 E-value=1.2e-09 Score=106.18 Aligned_cols=172 Identities=17% Similarity=0.153 Sum_probs=110.9
Q ss_pred cHHHHHHHHHHHHHHHHHhh----cCC-CCCeEEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccccccCCcHHHHH
Q 019334 49 APVFMASLLCHIVKNYIAHL----LNV-KVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIR 123 (342)
Q Consensus 49 ~~~f~d~l~~hi~K~~l~~~----~~~-k~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~~~GEsEr~iR 123 (342)
|..|.|-++.+-+|+.|.-. -.. ..+=-++||||||.|||++|..+|++||+++-..|++-|..+ | -+-
T Consensus 22 P~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK~--g----Dla 95 (332)
T COG2255 22 PKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEKP--G----DLA 95 (332)
T ss_pred cccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccCh--h----hHH
Confidence 66777778888888888631 122 344589999999999999999999999999999999988742 2 222
Q ss_pred HHHHHHHHhhhhcCCceEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccC----ccccc----cCCCCCc
Q 019334 124 ERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIG----QDWRE----SDITNRI 195 (342)
Q Consensus 124 ~~F~~A~e~~~~~~~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~----g~~~~----~~~~~~V 195 (342)
.++. .-..-.|||||||.+..+. |-..|-.-|++ .+++ ....+ -+ .++-
T Consensus 96 aiLt-------~Le~~DVLFIDEIHrl~~~------------vEE~LYpaMED---f~lDI~IG~gp~Arsv~ld-LppF 152 (332)
T COG2255 96 AILT-------NLEEGDVLFIDEIHRLSPA------------VEEVLYPAMED---FRLDIIIGKGPAARSIRLD-LPPF 152 (332)
T ss_pred HHHh-------cCCcCCeEEEehhhhcChh------------HHHHhhhhhhh---eeEEEEEccCCccceEecc-CCCe
Confidence 2221 1234689999999997531 22334333332 2221 10000 01 3455
Q ss_pred cEEEeeCCCCCCccCCCCCCCCcceecC--CCHHHHHHHHHHHhhcC--CCCHHHHHHHh
Q 019334 196 PIIFTGNDFSTIYAPLIRDGRMEKFYWQ--PNLEDILNIVHRMYEKD--GITKDEVGSIV 251 (342)
Q Consensus 196 ~VIatTNr~~~LdpaLlRpGRfD~~i~v--P~~~~R~~Il~~~~~~~--~~s~~di~~lv 251 (342)
-.|+||.|+-.|..||+= ||--..-+ =+.++-.+|++...+.. +++.+....+.
T Consensus 153 TLIGATTr~G~lt~PLrd--RFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA 210 (332)
T COG2255 153 TLIGATTRAGMLTNPLRD--RFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIA 210 (332)
T ss_pred eEeeeccccccccchhHH--hcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHH
Confidence 689999999999999986 77753322 35667777777544433 34554444443
No 130
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.13 E-value=5.7e-10 Score=120.51 Aligned_cols=135 Identities=18% Similarity=0.162 Sum_probs=80.8
Q ss_pred cHHHHHHHHHHHHHHHHHhhcCCCCCeE-EEeecCCCCCHHHHHHHHHHHh---CCceEEeecccccc-----cccCCcH
Q 019334 49 APVFMASLLCHIVKNYIAHLLNVKVPLI-LGIWGGKGQGKSFQTELIFQAM---GIEPVIMSAGELES-----ERAGEPG 119 (342)
Q Consensus 49 ~~~f~d~l~~hi~K~~l~~~~~~k~Plg-lgL~GPPG~GKTllaravA~~~---g~~~i~vs~~eL~s-----~~~GEsE 119 (342)
.+.....+..++.+.... +.....|.+ ++++||||||||.+|+++|+.+ +.++++++.++... +.+|.+.
T Consensus 514 Q~~ai~~l~~~i~~~~~g-l~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~~l~g~~~ 592 (821)
T CHL00095 514 QDEAVVAVSKAIRRARVG-LKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVSKLIGSPP 592 (821)
T ss_pred hHHHHHHHHHHHHHHhhc-ccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHHHhcCCCC
Confidence 334444444444444433 233455665 6899999999999999999987 46899999988632 3334321
Q ss_pred HH-----HHHHHHHHHHhhhhcCCc-eEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCC
Q 019334 120 KL-----IRERYRTASQVVQNQGKM-SCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITN 193 (342)
Q Consensus 120 r~-----iR~~F~~A~e~~~~~~~P-cILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~ 193 (342)
.- ...+. ++.. .+| |||+|||||+.- ..+...|+.++|.-...--.| ...+ .+
T Consensus 593 gyvg~~~~~~l~-~~~~-----~~p~~VvllDeieka~------------~~v~~~Llq~le~g~~~d~~g--~~v~-~~ 651 (821)
T CHL00095 593 GYVGYNEGGQLT-EAVR-----KKPYTVVLFDEIEKAH------------PDIFNLLLQILDDGRLTDSKG--RTID-FK 651 (821)
T ss_pred cccCcCccchHH-HHHH-----hCCCeEEEECChhhCC------------HHHHHHHHHHhccCceecCCC--cEEe-cC
Confidence 10 01122 2221 234 899999999863 236667888888421110001 1112 35
Q ss_pred CccEEEeeCCCC
Q 019334 194 RIPIIFTGNDFS 205 (342)
Q Consensus 194 ~V~VIatTNr~~ 205 (342)
++.||+|||-..
T Consensus 652 ~~i~I~Tsn~g~ 663 (821)
T CHL00095 652 NTLIIMTSNLGS 663 (821)
T ss_pred ceEEEEeCCcch
Confidence 788999999654
No 131
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.13 E-value=1.2e-09 Score=114.00 Aligned_cols=174 Identities=16% Similarity=0.276 Sum_probs=107.1
Q ss_pred HHHHhhhhhhhhcccccccHHHHHHHHHHHHHHHHHhhcCCCCCeEEEeecCCCCCHHHHHHHHHHHhCCc---------
Q 019334 31 YRQKVTRSFEYLQGDYYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIE--------- 101 (342)
Q Consensus 31 ~~~~~~r~f~~~~~~~y~~~~f~d~l~~hi~K~~l~~~~~~k~PlglgL~GPPG~GKTllaravA~~~g~~--------- 101 (342)
||.++-++|.+++|-.++- .-+++++. .-+.|..+++|||||+|||++|+++|+.+.+.
T Consensus 7 ~~kyRP~~f~diiGqe~iv---------~~L~~~i~---~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~ 74 (563)
T PRK06647 7 ATKRRPRDFNSLEGQDFVV---------ETLKHSIE---SNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCG 74 (563)
T ss_pred HHHhCCCCHHHccCcHHHH---------HHHHHHHH---cCCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCc
Confidence 4555556666666433321 12334443 23678899999999999999999999998763
Q ss_pred ---------------eEEeecccccccccCCcHHHHHHHHHHHHHhhhhcCCceEEEeecccccCCCCCCCcccchhHHH
Q 019334 102 ---------------PVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIV 166 (342)
Q Consensus 102 ---------------~i~vs~~eL~s~~~GEsEr~iR~~F~~A~e~~~~~~~PcILfIDEIDAg~~r~~~t~~~v~~q~V 166 (342)
++.+++++ -.+-..||++.+.+.. ....+...|++|||+|..-. . .
T Consensus 75 ~C~~C~~i~~~~~~dv~~idgas------~~~vddIr~l~e~~~~-~p~~~~~KVvIIDEa~~Ls~-----------~-a 135 (563)
T PRK06647 75 ECSSCKSIDNDNSLDVIEIDGAS------NTSVQDVRQIKEEIMF-PPASSRYRVYIIDEVHMLSN-----------S-A 135 (563)
T ss_pred cchHHHHHHcCCCCCeEEecCcc------cCCHHHHHHHHHHHHh-chhcCCCEEEEEEChhhcCH-----------H-H
Confidence 22222211 0123466766655432 22235678999999987631 1 2
Q ss_pred HHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCCccCCCCCCCCcceec-CCCHHHHHHHHHHHhhcCCC--C
Q 019334 167 VGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYW-QPNLEDILNIVHRMYEKDGI--T 243 (342)
Q Consensus 167 ~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~~~LdpaLlRpGRfD~~i~-vP~~~~R~~Il~~~~~~~~~--s 243 (342)
...|+..+..| ...+.+|.+|+.+..|.++|+- |.-.+-+ .|+.++...+++...+..++ +
T Consensus 136 ~naLLK~LEep--------------p~~~vfI~~tte~~kL~~tI~S--Rc~~~~f~~l~~~el~~~L~~i~~~egi~id 199 (563)
T PRK06647 136 FNALLKTIEEP--------------PPYIVFIFATTEVHKLPATIKS--RCQHFNFRLLSLEKIYNMLKKVCLEDQIKYE 199 (563)
T ss_pred HHHHHHhhccC--------------CCCEEEEEecCChHHhHHHHHH--hceEEEecCCCHHHHHHHHHHHHHHcCCCCC
Confidence 23455555532 3466677777888999998876 5554434 37788888888877665553 3
Q ss_pred HHHHHHHh
Q 019334 244 KDEVGSIV 251 (342)
Q Consensus 244 ~~di~~lv 251 (342)
.+.+..++
T Consensus 200 ~eAl~lLa 207 (563)
T PRK06647 200 DEALKWIA 207 (563)
T ss_pred HHHHHHHH
Confidence 44444444
No 132
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.12 E-value=1.1e-09 Score=115.52 Aligned_cols=180 Identities=14% Similarity=0.204 Sum_probs=107.9
Q ss_pred ccccHHHHHHHHHHHHHHHHHhh-cCCCCCeEEEeecCCCCCHHHHHHHHHHHhCCceEE----e--------------e
Q 019334 46 YYIAPVFMASLLCHIVKNYIAHL-LNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVI----M--------------S 106 (342)
Q Consensus 46 ~y~~~~f~d~l~~hi~K~~l~~~-~~~k~PlglgL~GPPG~GKTllaravA~~~g~~~i~----v--------------s 106 (342)
-|-|..|.|.++..-++..|... ..-+.+..+++|||||+|||++|+++|+.+.+.... - +
T Consensus 9 kyRP~~f~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~~i~~g~ 88 (620)
T PRK14948 9 KYRPQRFDELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCRAIAAGN 88 (620)
T ss_pred HhCCCcHhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHHHHhcCC
Confidence 35555566665544333333332 223567789999999999999999999999873110 0 0
Q ss_pred ccccc--ccccCCcHHHHHHHHHHHHHhhhhcCCceEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCc
Q 019334 107 AGELE--SERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQ 184 (342)
Q Consensus 107 ~~eL~--s~~~GEsEr~iR~~F~~A~e~~~~~~~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g 184 (342)
..+++ +...+..-..||++...+.. ....+.-.|+||||+|..-. . -...|+..++.|
T Consensus 89 h~D~~ei~~~~~~~vd~IReii~~a~~-~p~~~~~KViIIDEad~Lt~-----------~-a~naLLK~LEeP------- 148 (620)
T PRK14948 89 ALDVIEIDAASNTGVDNIRELIERAQF-APVQARWKVYVIDECHMLST-----------A-AFNALLKTLEEP------- 148 (620)
T ss_pred CccEEEEeccccCCHHHHHHHHHHHhh-ChhcCCceEEEEECccccCH-----------H-HHHHHHHHHhcC-------
Confidence 01111 12233456788999877643 22235567999999997631 1 223556555532
Q ss_pred cccccCCCCCccEEEeeCCCCCCccCCCCCCCCcceec-CCCHHHHHHHHHHHhhcC--CCCHHHHHHHhhcC
Q 019334 185 DWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYW-QPNLEDILNIVHRMYEKD--GITKDEVGSIVKTF 254 (342)
Q Consensus 185 ~~~~~~~~~~V~VIatTNr~~~LdpaLlRpGRfD~~i~-vP~~~~R~~Il~~~~~~~--~~s~~di~~lvd~f 254 (342)
...+.+|.+||+++.|.|+|+- |...+-+ .|+.++-...+..+.... .++.+.+..++...
T Consensus 149 -------p~~tvfIL~t~~~~~llpTIrS--Rc~~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s 212 (620)
T PRK14948 149 -------PPRVVFVLATTDPQRVLPTIIS--RCQRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRS 212 (620)
T ss_pred -------CcCeEEEEEeCChhhhhHHHHh--heeEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHc
Confidence 3456667777889999988865 5544434 356666565665555544 35555555555433
No 133
>PRK06620 hypothetical protein; Validated
Probab=99.12 E-value=5.7e-10 Score=102.79 Aligned_cols=148 Identities=17% Similarity=0.272 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHhhcCCCCC--eEEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccccccCCcHHHHHHHHHHHHHhh
Q 019334 56 LLCHIVKNYIAHLLNVKVP--LILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVV 133 (342)
Q Consensus 56 l~~hi~K~~l~~~~~~k~P--lglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~~~GEsEr~iR~~F~~A~e~~ 133 (342)
.+.+.+++|.. .++. .| ..+.||||||||||.+++++|+..++.++. .... ..+.|
T Consensus 26 ~a~~~~~~~~~-~~~~-~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~--~~~~-----------~~~~~------- 83 (214)
T PRK06620 26 QAYNIIKNWQC-GFGV-NPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYIIK--DIFF-----------NEEIL------- 83 (214)
T ss_pred HHHHHHHHHHH-cccc-CCCcceEEEECCCCCCHHHHHHHHHhccCCEEcc--hhhh-----------chhHH-------
Confidence 46677777764 2332 34 678999999999999999999998864433 1100 01111
Q ss_pred hhcCCceEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCCc-cCCC
Q 019334 134 QNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIY-APLI 212 (342)
Q Consensus 134 ~~~~~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~~~Ld-paLl 212 (342)
..-.+|+|||||.. + ...+. .+.|.+. + .....||+++..|..+. |+|+
T Consensus 84 ---~~~d~lliDdi~~~-------~----~~~lf-~l~N~~~-------------e--~g~~ilits~~~p~~l~l~~L~ 133 (214)
T PRK06620 84 ---EKYNAFIIEDIENW-------Q----EPALL-HIFNIIN-------------E--KQKYLLLTSSDKSRNFTLPDLS 133 (214)
T ss_pred ---hcCCEEEEeccccc-------h----HHHHH-HHHHHHH-------------h--cCCEEEEEcCCCccccchHHHH
Confidence 12478999999932 1 12232 2332222 1 12334455554555421 4444
Q ss_pred CCCCCcc----eecCCCHHHHHHHHHHHhhcCC--CCHHHHHHHhhcCCCC
Q 019334 213 RDGRMEK----FYWQPNLEDILNIVHRMYEKDG--ITKDEVGSIVKTFPNQ 257 (342)
Q Consensus 213 RpGRfD~----~i~vP~~~~R~~Il~~~~~~~~--~s~~di~~lvd~f~~~ 257 (342)
= ||.. .+..|+.+.|..|++.+.+..+ ++.+-++-|+..+++.
T Consensus 134 S--Rl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~~ev~~~L~~~~~~d 182 (214)
T PRK06620 134 S--RIKSVLSILLNSPDDELIKILIFKHFSISSVTISRQIIDFLLVNLPRE 182 (214)
T ss_pred H--HHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCC
Confidence 3 6653 2224999999999998887654 6777778887777663
No 134
>PRK08116 hypothetical protein; Validated
Probab=99.12 E-value=4.3e-10 Score=106.92 Aligned_cols=118 Identities=20% Similarity=0.330 Sum_probs=73.2
Q ss_pred HHHHHHHHHHhhcCC-CCCeEEEeecCCCCCHHHHHHHHHHHh---CCceEEeeccccccccc----CCcHHHHHHHHHH
Q 019334 57 LCHIVKNYIAHLLNV-KVPLILGIWGGKGQGKSFQTELIFQAM---GIEPVIMSAGELESERA----GEPGKLIRERYRT 128 (342)
Q Consensus 57 ~~hi~K~~l~~~~~~-k~PlglgL~GPPG~GKTllaravA~~~---g~~~i~vs~~eL~s~~~----GEsEr~iR~~F~~ 128 (342)
+...++++....... ..+.+++||||||+|||+||.|+|+++ |.+++.++.+++++.+. +.+.....+.++.
T Consensus 96 a~~~a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~ 175 (268)
T PRK08116 96 AYKIARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRS 175 (268)
T ss_pred HHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHH
Confidence 444555555432111 345789999999999999999999985 88999999999876432 1111111112211
Q ss_pred HHHhhhhcCCceEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCC
Q 019334 129 ASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDF 204 (342)
Q Consensus 129 A~e~~~~~~~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~ 204 (342)
. ....+|+|||+.+--. + .-...+|.+++|+ .+ ..+.|+|+|||.+
T Consensus 176 l-------~~~dlLviDDlg~e~~----t------~~~~~~l~~iin~--------r~-----~~~~~~IiTsN~~ 221 (268)
T PRK08116 176 L-------VNADLLILDDLGAERD----T------EWAREKVYNIIDS--------RY-----RKGLPTIVTTNLS 221 (268)
T ss_pred h-------cCCCEEEEecccCCCC----C------HHHHHHHHHHHHH--------HH-----HCCCCEEEECCCC
Confidence 1 2356999999965211 1 1123456677662 11 3467899999976
No 135
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.12 E-value=2.3e-10 Score=105.47 Aligned_cols=174 Identities=23% Similarity=0.293 Sum_probs=102.8
Q ss_pred HHHHHHHHHHHHHhhcCCCCCeEEEeecCCCCCHHHHHHHHHHHh-----CCceEEeeccccccccc-----CCcHHHHH
Q 019334 54 ASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAM-----GIEPVIMSAGELESERA-----GEPGKLIR 123 (342)
Q Consensus 54 d~l~~hi~K~~l~~~~~~k~PlglgL~GPPG~GKTllaravA~~~-----g~~~i~vs~~eL~s~~~-----GEsEr~iR 123 (342)
.+++.+.+++... .++... ..+.||||+|+|||.|..|+++++ +..++.+++.++...++ ++.+. ++
T Consensus 16 N~~a~~~~~~ia~-~~~~~~-~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~~-~~ 92 (219)
T PF00308_consen 16 NELAYAAAKAIAE-NPGERY-NPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIEE-FK 92 (219)
T ss_dssp THHHHHHHHHHHH-STTTSS-SEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHHH-HH
T ss_pred HHHHHHHHHHHHh-cCCCCC-CceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccchh-hh
Confidence 3467777777766 344322 237899999999999999999774 67889999988765432 22222 22
Q ss_pred HHHHHHHHhhhhcCCceEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCC
Q 019334 124 ERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGND 203 (342)
Q Consensus 124 ~~F~~A~e~~~~~~~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr 203 (342)
+.|+ ...+|+||+||.+.++ +.....|..+.+. +. .++.+||.|+++
T Consensus 93 ~~~~----------~~DlL~iDDi~~l~~~----------~~~q~~lf~l~n~---------~~----~~~k~li~ts~~ 139 (219)
T PF00308_consen 93 DRLR----------SADLLIIDDIQFLAGK----------QRTQEELFHLFNR---------LI----ESGKQLILTSDR 139 (219)
T ss_dssp HHHC----------TSSEEEEETGGGGTTH----------HHHHHHHHHHHHH---------HH----HTTSEEEEEESS
T ss_pred hhhh----------cCCEEEEecchhhcCc----------hHHHHHHHHHHHH---------HH----hhCCeEEEEeCC
Confidence 3332 3578999999998642 1223345555551 11 134567777754
Q ss_pred -CCCCccCCCCC---CCCcc--eec--CCCHHHHHHHHHHHhhcCC--CCHHHHHHHhhcCCCCccchHHHH
Q 019334 204 -FSTIYAPLIRD---GRMEK--FYW--QPNLEDILNIVHRMYEKDG--ITKDEVGSIVKTFPNQALDFYGAL 265 (342)
Q Consensus 204 -~~~LdpaLlRp---GRfD~--~i~--vP~~~~R~~Il~~~~~~~~--~s~~di~~lvd~f~~~~~df~gAl 265 (342)
|+.|.. ++| =||-- .+. .|+.++|..|++......+ ++.+-++.|+..+++.-=...+++
T Consensus 140 ~P~~l~~--~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~~~v~~~l~~~~~~~~r~L~~~l 209 (219)
T PF00308_consen 140 PPSELSG--LLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKERGIELPEEVIEYLARRFRRDVRELEGAL 209 (219)
T ss_dssp -TTTTTT--S-HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT--S-HHHHHHHHHHTTSSHHHHHHHH
T ss_pred CCccccc--cChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCCcHHHHHHHHHhhcCCHHHHHHHH
Confidence 444432 222 13322 112 3999999999998887765 566666777766655322333444
No 136
>PHA02244 ATPase-like protein
Probab=99.11 E-value=1.4e-09 Score=108.92 Aligned_cols=134 Identities=20% Similarity=0.236 Sum_probs=79.3
Q ss_pred eEEEeecCCCCCHHHHHHHHHHHhCCceEEeecc----cccccccCCcHHHHHHHHHHHHHhhhhcCCceEEEeeccccc
Q 019334 75 LILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAG----ELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAG 150 (342)
Q Consensus 75 lglgL~GPPG~GKTllaravA~~~g~~~i~vs~~----eL~s~~~GEsEr~iR~~F~~A~e~~~~~~~PcILfIDEIDAg 150 (342)
.-|+|+||||||||++|+++|..++.+++.++.- ++. ++........-..|-+|. ....+|+|||||..
T Consensus 120 ~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~-G~i~~~g~~~dgpLl~A~------~~GgvLiLDEId~a 192 (383)
T PHA02244 120 IPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELK-GFIDANGKFHETPFYEAF------KKGGLFFIDEIDAS 192 (383)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhc-ccccccccccchHHHHHh------hcCCEEEEeCcCcC
Confidence 4478899999999999999999999999999842 111 111111111111233332 24789999999986
Q ss_pred CCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCC-----------CCCccCCCCCCCCcc
Q 019334 151 LGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDF-----------STIYAPLIRDGRMEK 219 (342)
Q Consensus 151 ~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~-----------~~LdpaLlRpGRfD~ 219 (342)
.+ .+...|..++++ ..+.+.+.. .....+.-+|+|+|.+ ..|++|++- ||-.
T Consensus 193 ~p------------~vq~~L~~lLd~-r~l~l~g~~--i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllD--RFv~ 255 (383)
T PHA02244 193 IP------------EALIIINSAIAN-KFFDFADER--VTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLD--RFAP 255 (383)
T ss_pred CH------------HHHHHHHHHhcc-CeEEecCcE--EecCCCEEEEEeeCCCccCcccccCCCcccCHHHHh--hcEE
Confidence 42 123334444442 122332211 1113578899999984 567888776 7754
Q ss_pred eec-CCCHHHHHHHH
Q 019334 220 FYW-QPNLEDILNIV 233 (342)
Q Consensus 220 ~i~-vP~~~~R~~Il 233 (342)
+.+ .|+ +.-..|.
T Consensus 256 I~~dyp~-~~E~~i~ 269 (383)
T PHA02244 256 IEFDYDE-KIEHLIS 269 (383)
T ss_pred eeCCCCc-HHHHHHh
Confidence 322 266 3333444
No 137
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.11 E-value=1.1e-09 Score=99.62 Aligned_cols=153 Identities=14% Similarity=0.203 Sum_probs=92.1
Q ss_pred HHHHHHHHHHhhcCCCCCeEEEeecCCCCCHHHHHHHHHHHh---CCceEEeecccccccccCCcHHHHHHHHHHHHHhh
Q 019334 57 LCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAM---GIEPVIMSAGELESERAGEPGKLIRERYRTASQVV 133 (342)
Q Consensus 57 ~~hi~K~~l~~~~~~k~PlglgL~GPPG~GKTllaravA~~~---g~~~i~vs~~eL~s~~~GEsEr~iR~~F~~A~e~~ 133 (342)
+...+++|.. +...+..++|+||||||||.+|+++++++ |.+++.+++.++... +. .
T Consensus 28 ~~~~l~~~~~---~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~~------------~~----~- 87 (227)
T PRK08903 28 LVARLRELAA---GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLLA------------FD----F- 87 (227)
T ss_pred HHHHHHHHHh---ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHHH------------Hh----h-
Confidence 4455566554 23456789999999999999999999875 678888888776421 11 1
Q ss_pred hhcCCceEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCC---CCccC
Q 019334 134 QNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFS---TIYAP 210 (342)
Q Consensus 134 ~~~~~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~~---~Ldpa 210 (342)
.....+|+|||+|...+. .+ ..|..+++. .. . .....||.|++.+. .+.+.
T Consensus 88 --~~~~~~liiDdi~~l~~~---------~~---~~L~~~~~~---------~~--~-~~~~~vl~~~~~~~~~~~l~~~ 141 (227)
T PRK08903 88 --DPEAELYAVDDVERLDDA---------QQ---IALFNLFNR---------VR--A-HGQGALLVAGPAAPLALPLRED 141 (227)
T ss_pred --cccCCEEEEeChhhcCch---------HH---HHHHHHHHH---------HH--H-cCCcEEEEeCCCCHHhCCCCHH
Confidence 123678999999986321 12 123333331 00 1 12233455554332 12333
Q ss_pred CCCCCCCc--ceecC--CCHHHHHHHHHHHhhcC--CCCHHHHHHHhhcCCCC
Q 019334 211 LIRDGRME--KFYWQ--PNLEDILNIVHRMYEKD--GITKDEVGSIVKTFPNQ 257 (342)
Q Consensus 211 LlRpGRfD--~~i~v--P~~~~R~~Il~~~~~~~--~~s~~di~~lvd~f~~~ 257 (342)
|+- ||. ..+.+ |+.+++..+++.+.... .++.+-+..|+..++|.
T Consensus 142 L~s--r~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~~~~~gn 192 (227)
T PRK08903 142 LRT--RLGWGLVYELKPLSDADKIAALKAAAAERGLQLADEVPDYLLTHFRRD 192 (227)
T ss_pred HHH--HHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCC
Confidence 432 443 23443 67778888888776654 46778888888766664
No 138
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.11 E-value=8.8e-10 Score=109.71 Aligned_cols=175 Identities=17% Similarity=0.228 Sum_probs=99.4
Q ss_pred cccHHHHHHHHHHHHHHHHHhh-cCCCCCeEEEeecCCCCCHHHHHHHHHHHhCCceEE----------eecc-------
Q 019334 47 YIAPVFMASLLCHIVKNYIAHL-LNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVI----------MSAG------- 108 (342)
Q Consensus 47 y~~~~f~d~l~~hi~K~~l~~~-~~~k~PlglgL~GPPG~GKTllaravA~~~g~~~i~----------vs~~------- 108 (342)
|=|..|.|.++..-+++.+... -+-+.|-.+++|||||||||++|+++|+.+.+.--. -..+
T Consensus 10 ~RP~~~~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~ 89 (397)
T PRK14955 10 YRPKKFADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRD 89 (397)
T ss_pred cCCCcHhhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHH
Confidence 4455555555544444444432 233788899999999999999999999999873100 0001
Q ss_pred -------cccccccCC---cHHHHHHHHHHHHHhhhhcCCceEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCC
Q 019334 109 -------ELESERAGE---PGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPT 178 (342)
Q Consensus 109 -------eL~s~~~GE---sEr~iR~~F~~A~e~~~~~~~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~ 178 (342)
++. .+-|. +-..||++-+.+. .....+.-.|+||||+|.... .. ...|+..+.+|
T Consensus 90 ~~~~~~~n~~-~~~~~~~~~id~Ir~l~~~~~-~~p~~~~~kvvIIdea~~l~~---------~~---~~~LLk~LEep- 154 (397)
T PRK14955 90 FDAGTSLNIS-EFDAASNNSVDDIRLLRENVR-YGPQKGRYRVYIIDEVHMLSI---------AA---FNAFLKTLEEP- 154 (397)
T ss_pred HhcCCCCCeE-eecccccCCHHHHHHHHHHHh-hchhcCCeEEEEEeChhhCCH---------HH---HHHHHHHHhcC-
Confidence 110 11121 2356666554442 111123457999999887641 01 12345444432
Q ss_pred ccccCccccccCCCCCccEEEeeCCCCCCccCCCCCCCCcceec-CCCHHHHHHHHHHHhhcCC--CCHHHHHHHh
Q 019334 179 RVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYW-QPNLEDILNIVHRMYEKDG--ITKDEVGSIV 251 (342)
Q Consensus 179 ~v~l~g~~~~~~~~~~V~VIatTNr~~~LdpaLlRpGRfD~~i~-vP~~~~R~~Il~~~~~~~~--~s~~di~~lv 251 (342)
...+.+|.+|+++..|.++|.. |....-+ .++.++-...++..++..+ ++.+.+..++
T Consensus 155 -------------~~~t~~Il~t~~~~kl~~tl~s--R~~~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l~ 215 (397)
T PRK14955 155 -------------PPHAIFIFATTELHKIPATIAS--RCQRFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIG 215 (397)
T ss_pred -------------CCCeEEEEEeCChHHhHHHHHH--HHHHhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 3455566666778888888776 3332212 2567777777776665544 5555555554
No 139
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=3.4e-10 Score=114.99 Aligned_cols=142 Identities=18% Similarity=0.232 Sum_probs=103.0
Q ss_pred EEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccc-cccCCc-HHHHHHHHHHHHHhhhhcCCceEEEeecccccCCC
Q 019334 76 ILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELES-ERAGEP-GKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGR 153 (342)
Q Consensus 76 glgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s-~~~GEs-Er~iR~~F~~A~e~~~~~~~PcILfIDEIDAg~~r 153 (342)
-|+|-||.|+||||+|+-+|+-+++||...++..|-. +|+||- |.-|..++..|-=.+. +.+--|+||||+|++...
T Consensus 228 NvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVe-kAQqGIVflDEvDKi~~~ 306 (564)
T KOG0745|consen 228 NVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVE-KAQQGIVFLDEVDKITKK 306 (564)
T ss_pred cEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHH-HHhcCeEEEehhhhhccc
Confidence 4788899999999999999999999999999999987 699995 6667777766643332 345679999999998854
Q ss_pred C-C-CCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeC-------CCCCCccCCCCCCCCccee
Q 019334 154 F-G-NTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGN-------DFSTIYAPLIRDGRMEKFY 221 (342)
Q Consensus 154 ~-~-~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTN-------r~~~LdpaLlRpGRfD~~i 221 (342)
- + ++..+|...-|++.||.++.| |.|.+++--.........+.|=||| -+..||--.-| |+|+..
T Consensus 307 ~~~i~~~RDVsGEGVQQaLLKllEG-tvVnVpeK~~~~~~rgd~vqiDTtnILFiasGAF~~Ldk~I~r--R~~d~s 380 (564)
T KOG0745|consen 307 AESIHTSRDVSGEGVQQALLKLLEG-TVVNVPEKGSRRKPRGDTVQIDTTNILFIASGAFVGLDKIISR--RLDDKS 380 (564)
T ss_pred CccccccccccchhHHHHHHHHhcc-cEEcccCCCCCCCCCCCeEEEeccceEEEecccccchHHHHHH--hhcchh
Confidence 3 3 566677778899999999997 6666654211111112233333333 56667777777 888643
No 140
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.10 E-value=2e-09 Score=112.51 Aligned_cols=181 Identities=12% Similarity=0.193 Sum_probs=104.4
Q ss_pred cccHHHHHHHHHHHHHHHHHh-hcCCCCCeEEEeecCCCCCHHHHHHHHHHHhCCceEEe---e--------------cc
Q 019334 47 YIAPVFMASLLCHIVKNYIAH-LLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIM---S--------------AG 108 (342)
Q Consensus 47 y~~~~f~d~l~~hi~K~~l~~-~~~~k~PlglgL~GPPG~GKTllaravA~~~g~~~i~v---s--------------~~ 108 (342)
|=|..|-|.++..-+++.|.. +..-+.+..++||||||||||++|+++|+.+.+..-.- . ..
T Consensus 10 yRP~~~~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~i~~~~~~ 89 (585)
T PRK14950 10 WRSQTFAELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRAIAEGSAV 89 (585)
T ss_pred hCCCCHHHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHHHhcCCCC
Confidence 344444454444444443332 12236778899999999999999999999987522100 0 01
Q ss_pred cccc--cccCCcHHHHHHHHHHHHHhhhhcCCceEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccc
Q 019334 109 ELES--ERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDW 186 (342)
Q Consensus 109 eL~s--~~~GEsEr~iR~~F~~A~e~~~~~~~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~ 186 (342)
+++. ....-+-..+|++-..+. .....+...|++|||+|.+.. . -...|+..+++|
T Consensus 90 d~~~i~~~~~~~vd~ir~ii~~~~-~~p~~~~~kVvIIDEa~~L~~-----------~-a~naLLk~LEep--------- 147 (585)
T PRK14950 90 DVIEMDAASHTSVDDAREIIERVQ-FRPALARYKVYIIDEVHMLST-----------A-AFNALLKTLEEP--------- 147 (585)
T ss_pred eEEEEeccccCCHHHHHHHHHHHh-hCcccCCeEEEEEeChHhCCH-----------H-HHHHHHHHHhcC---------
Confidence 1111 000112345666654432 222235577999999987631 1 123456555532
Q ss_pred cccCCCCCccEEEeeCCCCCCccCCCCCCCCcceecC-CCHHHHHHHHHHHhhcCC--CCHHHHHHHhhcCCC
Q 019334 187 RESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQ-PNLEDILNIVHRMYEKDG--ITKDEVGSIVKTFPN 256 (342)
Q Consensus 187 ~~~~~~~~V~VIatTNr~~~LdpaLlRpGRfD~~i~v-P~~~~R~~Il~~~~~~~~--~s~~di~~lvd~f~~ 256 (342)
...+.+|.+|+.++.+.+.|+. |..++.+. ++..+-..+++...+..+ ++.+.++.++....|
T Consensus 148 -----p~~tv~Il~t~~~~kll~tI~S--R~~~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~G 213 (585)
T PRK14950 148 -----PPHAIFILATTEVHKVPATILS--RCQRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATG 213 (585)
T ss_pred -----CCCeEEEEEeCChhhhhHHHHh--ccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 2456666777788888888764 55454443 678888888877766654 556656666554433
No 141
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.06 E-value=3.6e-09 Score=112.58 Aligned_cols=132 Identities=27% Similarity=0.384 Sum_probs=90.3
Q ss_pred eEEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccccccCCcHHHHHHHHHHHHHhhhhc---CCceEEEeecccccC
Q 019334 75 LILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQ---GKMSCLMINDIDAGL 151 (342)
Q Consensus 75 lglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~~~GEsEr~iR~~F~~A~e~~~~~---~~PcILfIDEIDAg~ 151 (342)
++++|+||||-|||++|+-||+++|-.++.|++++== +...+++...-|.++-.+- ++|.||+|||||-.-
T Consensus 327 KilLL~GppGlGKTTLAHViAkqaGYsVvEINASDeR------t~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~ 400 (877)
T KOG1969|consen 327 KILLLCGPPGLGKTTLAHVIAKQAGYSVVEINASDER------TAPMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAP 400 (877)
T ss_pred ceEEeecCCCCChhHHHHHHHHhcCceEEEecccccc------cHHHHHHHHHHHHhhccccccCCCcceEEEecccCCc
Confidence 7999999999999999999999999999999998743 4677888887777665444 789999999999754
Q ss_pred CCCCCCcccchhHHHHHHHHhhcC--CCCccccCccccccC---C---C--CCccEEEeeCCCCCCccCCCCCCCC-cce
Q 019334 152 GRFGNTQMTVNNQIVVGTLMNLSD--NPTRVSIGQDWRESD---I---T--NRIPIIFTGNDFSTIYAPLIRDGRM-EKF 220 (342)
Q Consensus 152 ~r~~~t~~~v~~q~V~~tLl~llD--~p~~v~l~g~~~~~~---~---~--~~V~VIatTNr~~~LdpaLlRpGRf-D~~ 220 (342)
+ ..+.+++.++. ++ +.-|.-..+. . . -.-|||..+|+ ||+|-+||=|= -++
T Consensus 401 -~-----------~~Vdvilslv~a~~k---~~~Gkq~~~~~~rkkkr~~~L~RPIICICNd---LYaPaLR~Lr~~A~i 462 (877)
T KOG1969|consen 401 -R-----------AAVDVILSLVKATNK---QATGKQAKKDKKRKKKRSKLLTRPIICICND---LYAPALRPLRPFAEI 462 (877)
T ss_pred -H-----------HHHHHHHHHHHhhcc---hhhcCcccchhhhhhhccccccCCEEEEecC---ccchhhhhcccceEE
Confidence 1 12334444433 22 2212100000 0 0 13599999997 88888887662 232
Q ss_pred -ecCCCHHHHH
Q 019334 221 -YWQPNLEDIL 230 (342)
Q Consensus 221 -i~vP~~~~R~ 230 (342)
+++|+...|+
T Consensus 463 i~f~~p~~s~L 473 (877)
T KOG1969|consen 463 IAFVPPSQSRL 473 (877)
T ss_pred EEecCCChhHH
Confidence 3456555544
No 142
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.06 E-value=1.9e-09 Score=105.60 Aligned_cols=172 Identities=19% Similarity=0.297 Sum_probs=111.1
Q ss_pred ccccHHHHHHHHHHHHHHHHHhhcCCCCCeEEEeecCCCCCHHHHHHHHHHHhCCc------eEEeecccccccccCCcH
Q 019334 46 YYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIE------PVIMSAGELESERAGEPG 119 (342)
Q Consensus 46 ~y~~~~f~d~l~~hi~K~~l~~~~~~k~PlglgL~GPPG~GKTllaravA~~~g~~------~i~vs~~eL~s~~~GEsE 119 (342)
-|-|+.|-|..+...+.+.|......+.-..+++|||||||||+.++|.|+++..+ +....+++ .-|-+
T Consensus 29 KYrPkt~de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSd----erGis- 103 (346)
T KOG0989|consen 29 KYRPKTFDELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASD----ERGIS- 103 (346)
T ss_pred HhCCCcHHhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccc----ccccc-
Confidence 35677888887776666666554434555678999999999999999999999871 12222222 11222
Q ss_pred HHHHH---HHHHHHHhhh-hcCCc----eEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCC
Q 019334 120 KLIRE---RYRTASQVVQ-NQGKM----SCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDI 191 (342)
Q Consensus 120 r~iR~---~F~~A~e~~~-~~~~P----cILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~ 191 (342)
.+|+ .|..-....+ ..+.| -|++|||.|+... --.++|...|+++
T Consensus 104 -vvr~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmts------------daq~aLrr~mE~~-------------- 156 (346)
T KOG0989|consen 104 -VVREKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTS------------DAQAALRRTMEDF-------------- 156 (346)
T ss_pred -chhhhhcCHHHHhhccccccCCCCCcceEEEEechhhhhH------------HHHHHHHHHHhcc--------------
Confidence 2232 3433322211 12233 5999999999752 2344666666631
Q ss_pred CCCccEEEeeCCCCCCccCCCCCCCCcceecCC-CHHHHHHHHHHHhhcCCC--CHHHHHHHh
Q 019334 192 TNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQP-NLEDILNIVHRMYEKDGI--TKDEVGSIV 251 (342)
Q Consensus 192 ~~~V~VIatTNr~~~LdpaLlRpGRfD~~i~vP-~~~~R~~Il~~~~~~~~~--s~~di~~lv 251 (342)
...+..|.-||-++.|+.++.= |.-|+.|-| ..+.-...|+.+...+++ +.+.+..++
T Consensus 157 s~~trFiLIcnylsrii~pi~S--RC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~ 217 (346)
T KOG0989|consen 157 SRTTRFILICNYLSRIIRPLVS--RCQKFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIA 217 (346)
T ss_pred ccceEEEEEcCChhhCChHHHh--hHHHhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 3456677789999999999987 888888866 445666777777777765 455555555
No 143
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=3.2e-09 Score=105.48 Aligned_cols=131 Identities=24% Similarity=0.284 Sum_probs=87.3
Q ss_pred CCceEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEee----CCCCCCccCCC
Q 019334 137 GKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTG----NDFSTIYAPLI 212 (342)
Q Consensus 137 ~~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatT----Nr~~~LdpaLl 212 (342)
-..-|+||||||++|.+.++.+.+++.+-|+.-||-+..|-| |+- -|...+ +.++..||++ ..|++|-|+|-
T Consensus 249 E~~GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGst-V~T--KyG~Vk-TdHILFIasGAFh~sKPSDLiPELQ 324 (444)
T COG1220 249 EQNGIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGST-VST--KYGPVK-TDHILFIASGAFHVAKPSDLIPELQ 324 (444)
T ss_pred HhcCeEEEehhhHHHhcCCCCCCCcchhhhcccccccccCce-eec--cccccc-cceEEEEecCceecCChhhcChhhc
Confidence 457899999999999877633347777778888998887643 221 233344 6789999985 79999999994
Q ss_pred CCCCCcceecC--CCHHHHHHHHH-----------HHhhcCC----CCHHHHHHHhh-cC-CCCccchHHHHHHHHHHHH
Q 019334 213 RDGRMEKFYWQ--PNLEDILNIVH-----------RMYEKDG----ITKDEVGSIVK-TF-PNQALDFYGALRSRTYDRS 273 (342)
Q Consensus 213 RpGRfD~~i~v--P~~~~R~~Il~-----------~~~~~~~----~s~~di~~lvd-~f-~~~~~df~gAlrs~~~~e~ 273 (342)
|||--.+.+ =+.++=..||. .++++++ ++.+-|.++.+ +| -++..+-.||=|=++.-|.
T Consensus 325 --GRfPIRVEL~~Lt~~Df~rILtep~~sLikQY~aLlkTE~v~l~FtddaI~~iAeiA~~vN~~~ENIGARRLhTvlEr 402 (444)
T COG1220 325 --GRFPIRVELDALTKEDFERILTEPKASLIKQYKALLKTEGVELEFTDDAIKRIAEIAYQVNEKTENIGARRLHTVLER 402 (444)
T ss_pred --CCCceEEEcccCCHHHHHHHHcCcchHHHHHHHHHHhhcCeeEEecHHHHHHHHHHHHHhcccccchhHHHHHHHHHH
Confidence 799877765 36677666763 3455554 34555555554 33 4455555566555554444
No 144
>PRK12377 putative replication protein; Provisional
Probab=99.04 E-value=9.1e-10 Score=104.25 Aligned_cols=113 Identities=17% Similarity=0.152 Sum_probs=73.2
Q ss_pred HHHHHHHHHHhhcCCCCCeEEEeecCCCCCHHHHHHHHHHHh---CCceEEeeccccccccc-----CCcHHHHHHHHHH
Q 019334 57 LCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAM---GIEPVIMSAGELESERA-----GEPGKLIRERYRT 128 (342)
Q Consensus 57 ~~hi~K~~l~~~~~~k~PlglgL~GPPG~GKTllaravA~~~---g~~~i~vs~~eL~s~~~-----GEsEr~iR~~F~~ 128 (342)
+...++.+..... ....+++||||||||||.+|.|+|.++ |..++.++.++|+.... ++++.. .++.
T Consensus 86 a~~~a~~~a~~~~--~~~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~---~l~~ 160 (248)
T PRK12377 86 ALSQAKSIADELM--TGCTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEK---FLQE 160 (248)
T ss_pred HHHHHHHHHHHHH--hcCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccchHHH---HHHH
Confidence 4455555555322 134689999999999999999999877 77888899999887321 222211 1111
Q ss_pred HHHhhhhcCCceEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCC
Q 019334 129 ASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDF 204 (342)
Q Consensus 129 A~e~~~~~~~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~ 204 (342)
-.+..+|+||||.+... + ... ...|.+++|. ...+..|+|.|||-.
T Consensus 161 -------l~~~dLLiIDDlg~~~~----s---~~~---~~~l~~ii~~-------------R~~~~~ptiitSNl~ 206 (248)
T PRK12377 161 -------LCKVDLLVLDEIGIQRE----T---KNE---QVVLNQIIDR-------------RTASMRSVGMLTNLN 206 (248)
T ss_pred -------hcCCCEEEEcCCCCCCC----C---HHH---HHHHHHHHHH-------------HHhcCCCEEEEcCCC
Confidence 23588999999987532 1 111 2355666552 113568999999975
No 145
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.03 E-value=5.5e-09 Score=109.65 Aligned_cols=164 Identities=13% Similarity=0.216 Sum_probs=102.4
Q ss_pred HHHHhhhhhhhhcccccccHHHHHHHHHHHHHHHHHhhcCCCCCeEEEeecCCCCCHHHHHHHHHHHhCCc---------
Q 019334 31 YRQKVTRSFEYLQGDYYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIE--------- 101 (342)
Q Consensus 31 ~~~~~~r~f~~~~~~~y~~~~f~d~l~~hi~K~~l~~~~~~k~PlglgL~GPPG~GKTllaravA~~~g~~--------- 101 (342)
||.++-++|.++++-.++ ...+++++. .-+.|-.+++|||||||||++|+++|+.+.+.
T Consensus 4 ~~kyRP~~f~eivGq~~i---------~~~L~~~i~---~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg 71 (584)
T PRK14952 4 YRKYRPATFAEVVGQEHV---------TEPLSSALD---AGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCG 71 (584)
T ss_pred HHHhCCCcHHHhcCcHHH---------HHHHHHHHH---cCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCccc
Confidence 566666677766654333 223555554 23788889999999999999999999998752
Q ss_pred -----------------eEEeecccccccccCCcHHHHHHHHHHHHHhhhhcCCceEEEeecccccCCCCCCCcccchhH
Q 019334 102 -----------------PVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQ 164 (342)
Q Consensus 102 -----------------~i~vs~~eL~s~~~GEsEr~iR~~F~~A~e~~~~~~~PcILfIDEIDAg~~r~~~t~~~v~~q 164 (342)
++.++++.- -+=..||++-..+. .....+.--|++|||+|.+-. .
T Consensus 72 ~C~~C~~i~~~~~~~~dvieidaas~------~gvd~iRel~~~~~-~~P~~~~~KVvIIDEah~Lt~-----------~ 133 (584)
T PRK14952 72 VCESCVALAPNGPGSIDVVELDAASH------GGVDDTRELRDRAF-YAPAQSRYRIFIVDEAHMVTT-----------A 133 (584)
T ss_pred ccHHHHHhhcccCCCceEEEeccccc------cCHHHHHHHHHHHH-hhhhcCCceEEEEECCCcCCH-----------H
Confidence 222322211 12345666554442 222234557999999988731 1
Q ss_pred HHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCCccCCCCCCCCcceec-CCCHHHHHHHHHHHhhcCC
Q 019334 165 IVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYW-QPNLEDILNIVHRMYEKDG 241 (342)
Q Consensus 165 ~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~~~LdpaLlRpGRfD~~i~-vP~~~~R~~Il~~~~~~~~ 241 (342)
-...|+..+.. . ..++.+|.+|+.++.|.++++- |.-.+-+ .++.++-.+.|+.+++..+
T Consensus 134 -A~NALLK~LEE-------------p-p~~~~fIL~tte~~kll~TI~S--Rc~~~~F~~l~~~~i~~~L~~i~~~eg 194 (584)
T PRK14952 134 -GFNALLKIVEE-------------P-PEHLIFIFATTEPEKVLPTIRS--RTHHYPFRLLPPRTMRALIARICEQEG 194 (584)
T ss_pred -HHHHHHHHHhc-------------C-CCCeEEEEEeCChHhhHHHHHH--hceEEEeeCCCHHHHHHHHHHHHHHcC
Confidence 22345555442 2 3567777777888999999765 4334333 3677777777777776655
No 146
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=1.4e-09 Score=112.68 Aligned_cols=154 Identities=19% Similarity=0.192 Sum_probs=106.2
Q ss_pred cCCCCCeEEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccccccCCcHH--HHHHHHHHHHHhhhhcCCceEEEeec
Q 019334 69 LNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGK--LIRERYRTASQVVQNQGKMSCLMIND 146 (342)
Q Consensus 69 ~~~k~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~~~GEsEr--~iR~~F~~A~e~~~~~~~PcILfIDE 146 (342)
+...+-.-++|+||||+|||.||--+|...+.|||.+-.+|=..++ -|++| .|+..|+.|. +...+||.+|+
T Consensus 533 s~~s~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~-sEsaKc~~i~k~F~DAY-----kS~lsiivvDd 606 (744)
T KOG0741|consen 533 SERSPLVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGL-SESAKCAHIKKIFEDAY-----KSPLSIIVVDD 606 (744)
T ss_pred cccCcceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCc-cHHHHHHHHHHHHHHhh-----cCcceEEEEcc
Confidence 3434446899999999999999999999999999997666544322 24443 5788898886 45689999999
Q ss_pred ccc------cCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCCccCCCCCC---CC
Q 019334 147 IDA------GLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDG---RM 217 (342)
Q Consensus 147 IDA------g~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~~~LdpaLlRpG---Rf 217 (342)
|+. +.||++ -.|.++||-++.- +-+..++.+|++||.+.+-|- +-| =|
T Consensus 607 iErLiD~vpIGPRfS--------N~vlQaL~VllK~-----------~ppkg~kLli~~TTS~~~vL~----~m~i~~~F 663 (744)
T KOG0741|consen 607 IERLLDYVPIGPRFS--------NLVLQALLVLLKK-----------QPPKGRKLLIFGTTSRREVLQ----EMGILDCF 663 (744)
T ss_pred hhhhhcccccCchhh--------HHHHHHHHHHhcc-----------CCCCCceEEEEecccHHHHHH----HcCHHHhh
Confidence 997 445654 2477788877662 122246789999998876543 222 24
Q ss_pred cceecCCCHHHHHHHHHHHhhcCCCCHHHHHHHh
Q 019334 218 EKFYWQPNLEDILNIVHRMYEKDGITKDEVGSIV 251 (342)
Q Consensus 218 D~~i~vP~~~~R~~Il~~~~~~~~~s~~di~~lv 251 (342)
+-.|.+|+..--.+.+..+...+-+++.++....
T Consensus 664 ~~~i~Vpnl~~~~~~~~vl~~~n~fsd~~~~~~~ 697 (744)
T KOG0741|consen 664 SSTIHVPNLTTGEQLLEVLEELNIFSDDEVRAIA 697 (744)
T ss_pred hheeecCccCchHHHHHHHHHccCCCcchhHHHH
Confidence 4567789776655556555555556665554443
No 147
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.02 E-value=3.6e-09 Score=114.88 Aligned_cols=143 Identities=17% Similarity=0.217 Sum_probs=89.5
Q ss_pred eEEEeecCCCCCHHHHHHHHHHHh---CCceEEeecccccc-----cccCCcHHHH----HHHHHHHHHhhhhcCCceEE
Q 019334 75 LILGIWGGKGQGKSFQTELIFQAM---GIEPVIMSAGELES-----ERAGEPGKLI----RERYRTASQVVQNQGKMSCL 142 (342)
Q Consensus 75 lglgL~GPPG~GKTllaravA~~~---g~~~i~vs~~eL~s-----~~~GEsEr~i----R~~F~~A~e~~~~~~~PcIL 142 (342)
-.++++||||||||++|+++|..+ +-+++.++.+++.. ...|.+...+ ...+.++.. +..-|||
T Consensus 596 ~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~~~l~g~~~g~~g~~~~g~l~~~v~----~~p~~vl 671 (852)
T TIGR03346 596 GSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSVARLIGAPPGYVGYEEGGQLTEAVR----RKPYSVV 671 (852)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchHHHhcCCCCCccCcccccHHHHHHH----cCCCcEE
Confidence 458899999999999999999987 56899999887643 2333221100 011222221 2234799
Q ss_pred EeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCC----------------
Q 019334 143 MINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFST---------------- 206 (342)
Q Consensus 143 fIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~~~---------------- 206 (342)
||||||+.- ..+...|++++|.-. +. ++.-...+ -+++.||+|||....
T Consensus 672 llDeieka~------------~~v~~~Ll~~l~~g~-l~-d~~g~~vd-~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~ 736 (852)
T TIGR03346 672 LFDEVEKAH------------PDVFNVLLQVLDDGR-LT-DGQGRTVD-FRNTVIIMTSNLGSQFIQELAGGDDYEEMRE 736 (852)
T ss_pred EEeccccCC------------HHHHHHHHHHHhcCc-ee-cCCCeEEe-cCCcEEEEeCCcchHhHhhhcccccHHHHHH
Confidence 999999752 235667888887421 11 01000111 356889999998432
Q ss_pred ---------CccCCCCCCCCccee-cC-CCHHHHHHHHHHHhh
Q 019334 207 ---------IYAPLIRDGRMEKFY-WQ-PNLEDILNIVHRMYE 238 (342)
Q Consensus 207 ---------LdpaLlRpGRfD~~i-~v-P~~~~R~~Il~~~~~ 238 (342)
+.|+|+ +|||.++ +. +++++..+|+...+.
T Consensus 737 ~~~~~~~~~F~pel~--~Rid~IivF~PL~~e~l~~I~~l~L~ 777 (852)
T TIGR03346 737 AVMEVLRAHFRPEFL--NRIDEIVVFHPLGREQIARIVEIQLG 777 (852)
T ss_pred HHHHHHHhhcCHHHh--cCcCeEEecCCcCHHHHHHHHHHHHH
Confidence 235555 5999855 44 688999999876543
No 148
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.00 E-value=7.6e-09 Score=108.83 Aligned_cols=176 Identities=13% Similarity=0.205 Sum_probs=105.5
Q ss_pred cccHHHHHHHHHHHHHHHHHhh-cCCCCCeEEEeecCCCCCHHHHHHHHHHHhCCceEEee-c-----------------
Q 019334 47 YIAPVFMASLLCHIVKNYIAHL-LNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMS-A----------------- 107 (342)
Q Consensus 47 y~~~~f~d~l~~hi~K~~l~~~-~~~k~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs-~----------------- 107 (342)
|=|..|-|.++..-+++.+... ..-+.|-.++||||||+|||++|+++|+.+.+.....+ +
T Consensus 18 yRP~~f~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~C~~i~~ 97 (598)
T PRK09111 18 YRPQTFDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEHCQAIME 97 (598)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHHHHHHhc
Confidence 4445555555444333333321 23377889999999999999999999999987532221 1
Q ss_pred ---cccccccc--CCcHHHHHHHHHHHHHhhhhcCCceEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCcccc
Q 019334 108 ---GELESERA--GEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSI 182 (342)
Q Consensus 108 ---~eL~s~~~--GEsEr~iR~~F~~A~e~~~~~~~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l 182 (342)
++++.-.. --+=..||++...+. .....+...|++|||+|.... . -...|+..|.+|
T Consensus 98 g~h~Dv~e~~a~s~~gvd~IReIie~~~-~~P~~a~~KVvIIDEad~Ls~-----------~-a~naLLKtLEeP----- 159 (598)
T PRK09111 98 GRHVDVLEMDAASHTGVDDIREIIESVR-YRPVSARYKVYIIDEVHMLST-----------A-AFNALLKTLEEP----- 159 (598)
T ss_pred CCCCceEEecccccCCHHHHHHHHHHHH-hchhcCCcEEEEEEChHhCCH-----------H-HHHHHHHHHHhC-----
Confidence 11211000 011346888876654 333346678999999988731 1 123455444422
Q ss_pred CccccccCCCCCccEEEeeCCCCCCccCCCCCCCCcceec-CCCHHHHHHHHHHHhhcCC--CCHHHHHHHh
Q 019334 183 GQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYW-QPNLEDILNIVHRMYEKDG--ITKDEVGSIV 251 (342)
Q Consensus 183 ~g~~~~~~~~~~V~VIatTNr~~~LdpaLlRpGRfD~~i~-vP~~~~R~~Il~~~~~~~~--~s~~di~~lv 251 (342)
...+.+|.+||.++.|.+.++- |.-.+-+ .|+.++-...|+..++..+ ++.+.+..++
T Consensus 160 ---------p~~~~fIl~tte~~kll~tI~S--Rcq~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa 220 (598)
T PRK09111 160 ---------PPHVKFIFATTEIRKVPVTVLS--RCQRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIA 220 (598)
T ss_pred ---------CCCeEEEEEeCChhhhhHHHHh--heeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 3567777777888888888654 5544323 3788888888877766654 3444444444
No 149
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.00 E-value=7.2e-09 Score=109.42 Aligned_cols=153 Identities=18% Similarity=0.263 Sum_probs=92.4
Q ss_pred CCCCeEEEeecCCCCCHHHHHHHHHHHhCCceEE----------eecccc-------------cccccCC---cHHHHHH
Q 019334 71 VKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVI----------MSAGEL-------------ESERAGE---PGKLIRE 124 (342)
Q Consensus 71 ~k~PlglgL~GPPG~GKTllaravA~~~g~~~i~----------vs~~eL-------------~s~~~GE---sEr~iR~ 124 (342)
-+.|-.+++|||||||||++|+++|+.+.+.--. -..+.. +..+-|. +-..||+
T Consensus 35 ~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~ 114 (620)
T PRK14954 35 DRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQ 114 (620)
T ss_pred CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHHhccCCCCeEEecccccCCHHHHHH
Confidence 3888999999999999999999999999873100 000000 0011221 2356776
Q ss_pred HHHHHHHhhhhcCCceEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCC
Q 019334 125 RYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDF 204 (342)
Q Consensus 125 ~F~~A~e~~~~~~~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~ 204 (342)
+-+.+.. ....+.--|++|||+|.... . -...|+..+.+| ...+.+|.+|+++
T Consensus 115 l~e~~~~-~P~~~~~KVvIIdEad~Lt~-----------~-a~naLLK~LEeP--------------p~~tv~IL~t~~~ 167 (620)
T PRK14954 115 LRENVRY-GPQKGRYRVYIIDEVHMLST-----------A-AFNAFLKTLEEP--------------PPHAIFIFATTEL 167 (620)
T ss_pred HHHHHHh-hhhcCCCEEEEEeChhhcCH-----------H-HHHHHHHHHhCC--------------CCCeEEEEEeCCh
Confidence 6544421 11234557999999887631 1 123566655542 2345555556777
Q ss_pred CCCccCCCCCCCCcceec-CCCHHHHHHHHHHHhhcCC--CCHHHHHHHhh
Q 019334 205 STIYAPLIRDGRMEKFYW-QPNLEDILNIVHRMYEKDG--ITKDEVGSIVK 252 (342)
Q Consensus 205 ~~LdpaLlRpGRfD~~i~-vP~~~~R~~Il~~~~~~~~--~s~~di~~lvd 252 (342)
..|.++++..+ -.+-+ .|+.++-...++.+++..+ ++.+.+..++.
T Consensus 168 ~kLl~TI~SRc--~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La~ 216 (620)
T PRK14954 168 HKIPATIASRC--QRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIAR 216 (620)
T ss_pred hhhhHHHHhhc--eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 89998887733 33223 3677777777777666554 56666666554
No 150
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.00 E-value=3.2e-09 Score=115.49 Aligned_cols=147 Identities=17% Similarity=0.239 Sum_probs=88.8
Q ss_pred CCCCe-EEEeecCCCCCHHHHHHHHHHHh---CCceEEeeccccccc-----ccCCcHHHH----HHHHHHHHHhhhhcC
Q 019334 71 VKVPL-ILGIWGGKGQGKSFQTELIFQAM---GIEPVIMSAGELESE-----RAGEPGKLI----RERYRTASQVVQNQG 137 (342)
Q Consensus 71 ~k~Pl-glgL~GPPG~GKTllaravA~~~---g~~~i~vs~~eL~s~-----~~GEsEr~i----R~~F~~A~e~~~~~~ 137 (342)
.+.|. .++++||||||||++|+++|..+ +-+++.++.+++... .+|.+..-+ ...+.++.. ..
T Consensus 594 ~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~~~~~LiG~~pgy~g~~~~g~l~~~v~----~~ 669 (857)
T PRK10865 594 PNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVR----RR 669 (857)
T ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhhhHHHHhCCCCcccccchhHHHHHHHH----hC
Confidence 34555 58899999999999999999887 457899998876432 222221100 011223321 12
Q ss_pred CceEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCC------------
Q 019334 138 KMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFS------------ 205 (342)
Q Consensus 138 ~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~~------------ 205 (342)
.-+||||||||+.- ..+...|++++|+-. +. ++.....+ ..+..||+|||...
T Consensus 670 p~~vLllDEieka~------------~~v~~~Ll~ile~g~-l~-d~~gr~vd-~rn~iiI~TSN~g~~~~~~~~~~~~~ 734 (857)
T PRK10865 670 PYSVILLDEVEKAH------------PDVFNILLQVLDDGR-LT-DGQGRTVD-FRNTVVIMTSNLGSDLIQERFGELDY 734 (857)
T ss_pred CCCeEEEeehhhCC------------HHHHHHHHHHHhhCc-ee-cCCceEEe-ecccEEEEeCCcchHHHHHhccccch
Confidence 23899999999752 225567788877411 10 11001112 34678999999742
Q ss_pred -------------CCccCCCCCCCCccee-cC-CCHHHHHHHHHHHhh
Q 019334 206 -------------TIYAPLIRDGRMEKFY-WQ-PNLEDILNIVHRMYE 238 (342)
Q Consensus 206 -------------~LdpaLlRpGRfD~~i-~v-P~~~~R~~Il~~~~~ 238 (342)
.+.|+|+- |+|..+ +. ++.++-..|++.++.
T Consensus 735 ~~~~~~~~~~~~~~f~PELln--Rld~iivF~PL~~edl~~Iv~~~L~ 780 (857)
T PRK10865 735 AHMKELVLGVVSHNFRPEFIN--RIDEVVVFHPLGEQHIASIAQIQLQ 780 (857)
T ss_pred HHHHHHHHHHHcccccHHHHH--hCCeeEecCCCCHHHHHHHHHHHHH
Confidence 23356664 888754 44 577888888776553
No 151
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=98.96 E-value=3.7e-09 Score=104.07 Aligned_cols=169 Identities=14% Similarity=0.159 Sum_probs=96.0
Q ss_pred cHHHHHHHHHHHHHHHHHhhcCCCCC-eEEEeecCCCCCHHHHHHHHHHHh-------CC--ceEEeec---------cc
Q 019334 49 APVFMASLLCHIVKNYIAHLLNVKVP-LILGIWGGKGQGKSFQTELIFQAM-------GI--EPVIMSA---------GE 109 (342)
Q Consensus 49 ~~~f~d~l~~hi~K~~l~~~~~~k~P-lglgL~GPPG~GKTllaravA~~~-------g~--~~i~vs~---------~e 109 (342)
|-.|.+.++..-+|..+.- .-+..- -+++|+||||||||++||++|+-+ ++ ++.++.. .+
T Consensus 4 ~~~f~~i~Gq~~~~~~l~~-~~~~~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 82 (334)
T PRK13407 4 PFPFSAIVGQEEMKQAMVL-TAIDPGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPEDCPEWAHVSSTT 82 (334)
T ss_pred CCCHHHhCCHHHHHHHHHH-HHhccCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcccCCcccccccCCc
Confidence 3358888888888776652 111112 369999999999999999999998 44 2222111 01
Q ss_pred ccc---------------cccCC--cHHHHH---HHHHHHHHhhhhcCCceEEEeecccccCCCCCCCcccchhHHHHHH
Q 019334 110 LES---------------ERAGE--PGKLIR---ERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGT 169 (342)
Q Consensus 110 L~s---------------~~~GE--sEr~iR---~~F~~A~e~~~~~~~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~t 169 (342)
++. ..+|. -++.++ -.|+.- ... +..--+||||||+..-+ .+++.
T Consensus 83 ~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G-~l~--~A~~GiL~lDEInrl~~------------~~q~~ 147 (334)
T PRK13407 83 MIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPG-LLA--RANRGYLYIDEVNLLED------------HIVDL 147 (334)
T ss_pred ccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCC-ceE--EcCCCeEEecChHhCCH------------HHHHH
Confidence 110 12220 000000 012110 111 01124899999998632 24556
Q ss_pred HHhhcCCC-CccccCccccccCCCCCccEEEeeCCCC-CCccCCCCCCCCcceecC--C-CHHHHHHHHHHHh
Q 019334 170 LMNLSDNP-TRVSIGQDWRESDITNRIPIIFTGNDFS-TIYAPLIRDGRMEKFYWQ--P-NLEDILNIVHRMY 237 (342)
Q Consensus 170 Ll~llD~p-~~v~l~g~~~~~~~~~~V~VIatTNr~~-~LdpaLlRpGRfD~~i~v--P-~~~~R~~Il~~~~ 237 (342)
|++.|+.- ..|+.+|.- .....++.+|+|+|-.+ .++++|+. ||.-.+.+ | +.++|.+|++...
T Consensus 148 Lle~mee~~v~v~r~G~~--~~~p~rfiviAt~NP~e~~l~~aLld--RF~~~v~v~~~~~~~e~~~il~~~~ 216 (334)
T PRK13407 148 LLDVAQSGENVVEREGLS--IRHPARFVLVGSGNPEEGELRPQLLD--RFGLSVEVRSPRDVETRVEVIRRRD 216 (334)
T ss_pred HHHHHHcCCeEEEECCeE--EecCCCEEEEecCCcccCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHHHhh
Confidence 66666531 123334421 12135788888888655 57888888 99877765 3 5599999998643
No 152
>PRK06921 hypothetical protein; Provisional
Probab=98.92 E-value=5.3e-09 Score=99.48 Aligned_cols=84 Identities=13% Similarity=0.225 Sum_probs=55.7
Q ss_pred HHHHHHHHHhhc--CCCCCeEEEeecCCCCCHHHHHHHHHHHh----CCceEEeecccccccccCCcHHHHHHHHHHHHH
Q 019334 58 CHIVKNYIAHLL--NVKVPLILGIWGGKGQGKSFQTELIFQAM----GIEPVIMSAGELESERAGEPGKLIRERYRTASQ 131 (342)
Q Consensus 58 ~hi~K~~l~~~~--~~k~PlglgL~GPPG~GKTllaravA~~~----g~~~i~vs~~eL~s~~~GEsEr~iR~~F~~A~e 131 (342)
...+++|+..-. .-.....++||||||+|||+++.|+|+++ |..++.++..+++.. ++..|....+
T Consensus 99 ~~~~~~~~~~f~~~~~~~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~--------l~~~~~~~~~ 170 (266)
T PRK06921 99 YECAVEYVKDFEKIQESRKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGD--------LKDDFDLLEA 170 (266)
T ss_pred HHHHHHHHHHHHHhcccCCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHH--------HHHHHHHHHH
Confidence 345556665321 11235789999999999999999999875 778888888877653 2333322211
Q ss_pred hhhhcCCceEEEeecccc
Q 019334 132 VVQNQGKMSCLMINDIDA 149 (342)
Q Consensus 132 ~~~~~~~PcILfIDEIDA 149 (342)
....-....+|+||||+.
T Consensus 171 ~~~~~~~~dlLiIDDl~~ 188 (266)
T PRK06921 171 KLNRMKKVEVLFIDDLFK 188 (266)
T ss_pred HHHHhcCCCEEEEecccc
Confidence 211124578999999966
No 153
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.92 E-value=3.4e-09 Score=106.32 Aligned_cols=80 Identities=23% Similarity=0.357 Sum_probs=61.3
Q ss_pred HHHHHHHhhcCCCCCeEEEeecCCCCCHHHHHHHHHHHhCCc---eEEeecccccccccCCcHHHHHHHHHHHHHhhhhc
Q 019334 60 IVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIE---PVIMSAGELESERAGEPGKLIRERYRTASQVVQNQ 136 (342)
Q Consensus 60 i~K~~l~~~~~~k~PlglgL~GPPG~GKTllaravA~~~g~~---~i~vs~~eL~s~~~GEsEr~iR~~F~~A~e~~~~~ 136 (342)
++++++. .+ +.| .+.||||||||||++|+.++....-+ ||.+|+..- .-+-+|++|+.|...-.-.
T Consensus 152 llrs~ie--q~-~ip-SmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~a-------~t~dvR~ife~aq~~~~l~ 220 (554)
T KOG2028|consen 152 LLRSLIE--QN-RIP-SMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATNA-------KTNDVRDIFEQAQNEKSLT 220 (554)
T ss_pred HHHHHHH--cC-CCC-ceEEecCCCCchHHHHHHHHhhcCCCceEEEEEecccc-------chHHHHHHHHHHHHHHhhh
Confidence 4555555 11 233 46789999999999999999888776 888888632 3578999999997655445
Q ss_pred CCceEEEeeccccc
Q 019334 137 GKMSCLMINDIDAG 150 (342)
Q Consensus 137 ~~PcILfIDEIDAg 150 (342)
++-.|||||||...
T Consensus 221 krkTilFiDEiHRF 234 (554)
T KOG2028|consen 221 KRKTILFIDEIHRF 234 (554)
T ss_pred cceeEEEeHHhhhh
Confidence 78999999999753
No 154
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.91 E-value=2.6e-08 Score=103.71 Aligned_cols=171 Identities=16% Similarity=0.239 Sum_probs=103.4
Q ss_pred cccHHHHHHHHHHHHHHHHHh-hcCCCCCeEEEeecCCCCCHHHHHHHHHHHhCCc------------------------
Q 019334 47 YIAPVFMASLLCHIVKNYIAH-LLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIE------------------------ 101 (342)
Q Consensus 47 y~~~~f~d~l~~hi~K~~l~~-~~~~k~PlglgL~GPPG~GKTllaravA~~~g~~------------------------ 101 (342)
|=|..|.|.++..-++..+.. +-.-+.|..+++|||||+|||++|+++|+.+.+.
T Consensus 8 yRP~~fdeiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~d 87 (535)
T PRK08451 8 YRPKHFDELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHID 87 (535)
T ss_pred HCCCCHHHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCe
Confidence 455566666654443333332 2234788899999999999999999999998431
Q ss_pred eEEeecccccccccCCcHHHHHHHHHHHHHhhhhcCCceEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccc
Q 019334 102 PVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVS 181 (342)
Q Consensus 102 ~i~vs~~eL~s~~~GEsEr~iR~~F~~A~e~~~~~~~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~ 181 (342)
++.+++++ . -+=..||+.-..+. .....+.--|++|||+|.... . ....|+..+..
T Consensus 88 v~eldaas----~--~gId~IRelie~~~-~~P~~~~~KVvIIDEad~Lt~-----------~-A~NALLK~LEE----- 143 (535)
T PRK08451 88 IIEMDAAS----N--RGIDDIRELIEQTK-YKPSMARFKIFIIDEVHMLTK-----------E-AFNALLKTLEE----- 143 (535)
T ss_pred EEEecccc----c--cCHHHHHHHHHHHh-hCcccCCeEEEEEECcccCCH-----------H-HHHHHHHHHhh-----
Confidence 22222211 0 01246676665432 111123446999999987631 1 12245554442
Q ss_pred cCccccccCCCCCccEEEeeCCCCCCccCCCCCCCCcceecC-CCHHHHHHHHHHHhhcCCC--CHHHHHHHhh
Q 019334 182 IGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQ-PNLEDILNIVHRMYEKDGI--TKDEVGSIVK 252 (342)
Q Consensus 182 l~g~~~~~~~~~~V~VIatTNr~~~LdpaLlRpGRfD~~i~v-P~~~~R~~Il~~~~~~~~~--s~~di~~lvd 252 (342)
+ ...+.+|.+||++..|+|+++- |.-.+-+- ++.++-...++.+++..++ +.+.+..++.
T Consensus 144 --------p-p~~t~FIL~ttd~~kL~~tI~S--Rc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~ 206 (535)
T PRK08451 144 --------P-PSYVKFILATTDPLKLPATILS--RTQHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILAR 206 (535)
T ss_pred --------c-CCceEEEEEECChhhCchHHHh--hceeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 2 3456677777889999998766 55444443 6777777777777776654 5555555554
No 155
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.91 E-value=3.9e-09 Score=99.77 Aligned_cols=116 Identities=13% Similarity=0.176 Sum_probs=72.6
Q ss_pred HHHHHHHHHHhhcCCCCCeEEEeecCCCCCHHHHHHHHHHHh---CCceEEeecccccccccCC---cHHHHHHHHHHHH
Q 019334 57 LCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAM---GIEPVIMSAGELESERAGE---PGKLIRERYRTAS 130 (342)
Q Consensus 57 ~~hi~K~~l~~~~~~k~PlglgL~GPPG~GKTllaravA~~~---g~~~i~vs~~eL~s~~~GE---sEr~iR~~F~~A~ 130 (342)
+...++.+..... ....+++|+||||||||+++.|+|.++ |..++.++.+++++...+. ++....+.++..
T Consensus 84 al~~a~~~~~~~~--~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l- 160 (244)
T PRK07952 84 ALSKARQYVEEFD--GNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDL- 160 (244)
T ss_pred HHHHHHHHHHhhc--cCCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHh-
Confidence 4555666665222 123589999999999999999999888 8899999999998633211 111111222211
Q ss_pred HhhhhcCCceEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCC
Q 019334 131 QVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDF 204 (342)
Q Consensus 131 e~~~~~~~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~ 204 (342)
..+.+|+||||++... +. ..+ ..|.+++|. ....+.|+|.|||-.
T Consensus 161 ------~~~dlLvIDDig~~~~----s~---~~~---~~l~~Ii~~-------------Ry~~~~~tiitSNl~ 205 (244)
T PRK07952 161 ------SNVDLLVIDEIGVQTE----SR---YEK---VIINQIVDR-------------RSSSKRPTGMLTNSN 205 (244)
T ss_pred ------ccCCEEEEeCCCCCCC----CH---HHH---HHHHHHHHH-------------HHhCCCCEEEeCCCC
Confidence 2478999999988531 11 112 234444441 113468999999965
No 156
>PRK09087 hypothetical protein; Validated
Probab=98.90 E-value=1.3e-08 Score=94.52 Aligned_cols=146 Identities=16% Similarity=0.187 Sum_probs=87.2
Q ss_pred HHHHHHHHHHhhcCCCCCeEEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccccccCCcHHHHHHHHHHHHHhhhhc
Q 019334 57 LCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQ 136 (342)
Q Consensus 57 ~~hi~K~~l~~~~~~k~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~~~GEsEr~iR~~F~~A~e~~~~~ 136 (342)
+.+.+++|.. ....-+.||||+|||||.+++++|+..++.++.. .++.. +.+ .+.+
T Consensus 32 a~~~l~~~~~-----~~~~~l~l~G~~GsGKThLl~~~~~~~~~~~i~~--~~~~~-----------~~~-~~~~----- 87 (226)
T PRK09087 32 AVSLVDHWPN-----WPSPVVVLAGPVGSGKTHLASIWREKSDALLIHP--NEIGS-----------DAA-NAAA----- 87 (226)
T ss_pred HHHHHHhccc-----CCCCeEEEECCCCCCHHHHHHHHHHhcCCEEecH--HHcch-----------HHH-Hhhh-----
Confidence 4445555542 1223479999999999999999999987664443 22221 111 1111
Q ss_pred CCceEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCC-CCC---CccCCC
Q 019334 137 GKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGND-FST---IYAPLI 212 (342)
Q Consensus 137 ~~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr-~~~---LdpaLl 212 (342)
..+|+|||||.... ++ ..+. .++|.+. ..+.++|.|++. |.. ..|.|+
T Consensus 88 --~~~l~iDDi~~~~~----~~-----~~lf-~l~n~~~----------------~~g~~ilits~~~p~~~~~~~~dL~ 139 (226)
T PRK09087 88 --EGPVLIEDIDAGGF----DE-----TGLF-HLINSVR----------------QAGTSLLMTSRLWPSSWNVKLPDLK 139 (226)
T ss_pred --cCeEEEECCCCCCC----CH-----HHHH-HHHHHHH----------------hCCCeEEEECCCChHHhccccccHH
Confidence 14788899997521 11 1122 2222211 234556666654 332 345554
Q ss_pred CCCCCcc--eec--CCCHHHHHHHHHHHhhcCC--CCHHHHHHHhhcCCC
Q 019334 213 RDGRMEK--FYW--QPNLEDILNIVHRMYEKDG--ITKDEVGSIVKTFPN 256 (342)
Q Consensus 213 RpGRfD~--~i~--vP~~~~R~~Il~~~~~~~~--~s~~di~~lvd~f~~ 256 (342)
= ||.. .+. .|+.++|.+||+.+++..+ ++.+-++-|+..+++
T Consensus 140 S--Rl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~l~~ev~~~La~~~~r 187 (226)
T PRK09087 140 S--RLKAATVVEIGEPDDALLSQVIFKLFADRQLYVDPHVVYYLVSRMER 187 (226)
T ss_pred H--HHhCCceeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhh
Confidence 3 6653 232 3999999999999888765 567777777766654
No 157
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.88 E-value=5.2e-08 Score=91.42 Aligned_cols=119 Identities=18% Similarity=0.306 Sum_probs=82.4
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHhC------------------------CceEEeecccccccccCCcHHHHHHHHH
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQAMG------------------------IEPVIMSAGELESERAGEPGKLIRERYR 127 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~~g------------------------~~~i~vs~~eL~s~~~GEsEr~iR~~F~ 127 (342)
+.|..++++||||||||+.|.++|+++. -.++.+++++.-..- .+++..+
T Consensus 22 ~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~~------i~~~~vr 95 (325)
T COG0470 22 RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKID------IIVEQVR 95 (325)
T ss_pred CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCCCc------chHHHHH
Confidence 6777999999999999999999999998 467777777655422 2344444
Q ss_pred HHHHhhhhc---CCceEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCC
Q 019334 128 TASQVVQNQ---GKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDF 204 (342)
Q Consensus 128 ~A~e~~~~~---~~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~ 204 (342)
+..+..... +..-|++|||+|.... ..-++.+-.+ +....+.++|.+||++
T Consensus 96 ~~~~~~~~~~~~~~~kviiidead~mt~-----------~A~nallk~l---------------Eep~~~~~~il~~n~~ 149 (325)
T COG0470 96 ELAEFLSESPLEGGYKVVIIDEADKLTE-----------DAANALLKTL---------------EEPPKNTRFILITNDP 149 (325)
T ss_pred HHHHHhccCCCCCCceEEEeCcHHHHhH-----------HHHHHHHHHh---------------ccCCCCeEEEEEcCCh
Confidence 444433212 5678999999999853 1112222211 2226789999999999
Q ss_pred CCCccCCCCCCCCcceecCC
Q 019334 205 STIYAPLIRDGRMEKFYWQP 224 (342)
Q Consensus 205 ~~LdpaLlRpGRfD~~i~vP 224 (342)
+.|-|+++- |--.+.+.|
T Consensus 150 ~~il~tI~S--Rc~~i~f~~ 167 (325)
T COG0470 150 SKILPTIRS--RCQRIRFKP 167 (325)
T ss_pred hhccchhhh--cceeeecCC
Confidence 999998776 655555544
No 158
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=2.8e-08 Score=107.05 Aligned_cols=166 Identities=20% Similarity=0.280 Sum_probs=113.6
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHH----------hCCceEEeecccccc--cccCCcHHHHHHHHHHHHHhhhhcCCc
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQA----------MGIEPVIMSAGELES--ERAGEPGKLIRERYRTASQVVQNQGKM 139 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~----------~g~~~i~vs~~eL~s--~~~GEsEr~iR~~F~~A~e~~~~~~~P 139 (342)
+...--.|-|+||.|||-+++-+|.+ -+..++.++.+.|+. +|-||-|++++.+..+..+ ++ +
T Consensus 189 R~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~LvAGakyRGeFEeRlk~vl~ev~~----~~-~ 263 (786)
T COG0542 189 RTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSLVAGAKYRGEFEERLKAVLKEVEK----SK-N 263 (786)
T ss_pred cCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHHHhccccccCcHHHHHHHHHHHHhc----CC-C
Confidence 33333445699999999999999954 467899999999998 5999999999999988764 33 9
Q ss_pred eEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCC-----CCCCccCCCCC
Q 019334 140 SCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGND-----FSTIYAPLIRD 214 (342)
Q Consensus 140 cILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr-----~~~LdpaLlRp 214 (342)
.|||||||+-+.|-..+.++.+.- +-+| - |.. . ....-+|+||+- .=.=|+||-|
T Consensus 264 vILFIDEiHtiVGAG~~~G~a~DA----aNiL---K-PaL--------A---RGeL~~IGATT~~EYRk~iEKD~AL~R- 323 (786)
T COG0542 264 VILFIDEIHTIVGAGATEGGAMDA----ANLL---K-PAL--------A---RGELRCIGATTLDEYRKYIEKDAALER- 323 (786)
T ss_pred eEEEEechhhhcCCCcccccccch----hhhh---H-HHH--------h---cCCeEEEEeccHHHHHHHhhhchHHHh-
Confidence 999999999976543321111111 1111 1 100 0 123567777642 3346999999
Q ss_pred CCCcceec-CCCHHHHHHHHHHHhh----cC--CCCHHHHHHHh--------hcC-CCCccchHH
Q 019334 215 GRMEKFYW-QPNLEDILNIVHRMYE----KD--GITKDEVGSIV--------KTF-PNQALDFYG 263 (342)
Q Consensus 215 GRfD~~i~-vP~~~~R~~Il~~~~~----~~--~~s~~di~~lv--------d~f-~~~~~df~g 263 (342)
||-+.+. .|+.++=..||+.+-. .. .++++-|+..+ +.| |...||..-
T Consensus 324 -RFQ~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv~LS~RYI~dR~LPDKAIDLiD 387 (786)
T COG0542 324 -RFQKVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEALVAAVTLSDRYIPDRFLPDKAIDLLD 387 (786)
T ss_pred -cCceeeCCCCCHHHHHHHHHHHHHHHHHccCceecHHHHHHHHHHHHhhcccCCCCchHHHHHH
Confidence 9987554 5999999999986422 22 35676666666 344 777788863
No 159
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=98.84 E-value=1.7e-08 Score=100.09 Aligned_cols=167 Identities=16% Similarity=0.115 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCC-eEEEeecCCCCCHHHHHHHHHHHhCC-----------------------------
Q 019334 51 VFMASLLCHIVKNYIAHLLNVKVP-LILGIWGGKGQGKSFQTELIFQAMGI----------------------------- 100 (342)
Q Consensus 51 ~f~d~l~~hi~K~~l~~~~~~k~P-lglgL~GPPG~GKTllaravA~~~g~----------------------------- 100 (342)
.|.+.++..-+|..+. +.-+.+. -+++|.||+|||||++||++++-+--
T Consensus 15 pf~~ivGq~~~k~al~-~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~~p~~~~~~~~~~~~~ 93 (350)
T CHL00081 15 PFTAIVGQEEMKLALI-LNVIDPKIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPSDPELMSDEVREAIQN 93 (350)
T ss_pred CHHHHhChHHHHHHHH-HhccCCCCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCCChhhhchhhhhhhcc
Confidence 3889999998998887 3323332 47999999999999999999766531
Q ss_pred -----------ceEEeecccccccccCCcHHHHHHHHHHHHHhhh----hcCCceEEEeecccccCCCCCCCcccchhHH
Q 019334 101 -----------EPVIMSAGELESERAGEPGKLIRERYRTASQVVQ----NQGKMSCLMINDIDAGLGRFGNTQMTVNNQI 165 (342)
Q Consensus 101 -----------~~i~vs~~eL~s~~~GEsEr~iR~~F~~A~e~~~----~~~~PcILfIDEIDAg~~r~~~t~~~v~~q~ 165 (342)
+++.+..+--.+..+|.- .+...|..+....+ .+..--+||||||+..-+ .
T Consensus 94 ~~~~~~~~~~~~~~~lp~~~ted~l~G~i--D~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~~------------~ 159 (350)
T CHL00081 94 GETIETEKIKIPMVDLPLGATEDRVCGTI--DIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDD------------H 159 (350)
T ss_pred cccccceeccccceecCCCCchhhccCcc--cHHHHhhcCcccccCCeeeecCCCEEEecChHhCCH------------H
Confidence 122222221222222210 01112222210000 011246899999998743 2
Q ss_pred HHHHHHhhcCCC-CccccCccccccCCCCCccEEEeeCCCC-CCccCCCCCCCCcceecC--CC-HHHHHHHHHHH
Q 019334 166 VVGTLMNLSDNP-TRVSIGQDWRESDITNRIPIIFTGNDFS-TIYAPLIRDGRMEKFYWQ--PN-LEDILNIVHRM 236 (342)
Q Consensus 166 V~~tLl~llD~p-~~v~l~g~~~~~~~~~~V~VIatTNr~~-~LdpaLlRpGRfD~~i~v--P~-~~~R~~Il~~~ 236 (342)
++..|++.|+.- ..+.-.|.- .....++.+|+|.|-.+ .|+++|+. ||.-.+.+ |+ .++|.+|++..
T Consensus 160 ~Q~~LLeam~e~~~~ier~G~s--~~~p~rfiviaT~np~eg~l~~~Lld--Rf~l~i~l~~~~~~~~e~~il~~~ 231 (350)
T CHL00081 160 LVDILLDSAASGWNTVEREGIS--IRHPARFVLVGSGNPEEGELRPQLLD--RFGMHAEIRTVKDPELRVKIVEQR 231 (350)
T ss_pred HHHHHHHHHHhCCeEEeeCCee--eecCCCEEEEeccCcccCCCCHHHHH--HhCceeecCCCCChHHHHHHHHhh
Confidence 444566666521 112112311 11134677777777555 57777777 77766654 65 69999999864
No 160
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.84 E-value=1.6e-08 Score=99.28 Aligned_cols=116 Identities=22% Similarity=0.278 Sum_probs=73.1
Q ss_pred HHHHHHHHHHhhcCCCCCeEEEeecCCCCCHHHHHHHHHHHh---CCceEEeecccccccccC---CcHHHHHHHHHHHH
Q 019334 57 LCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAM---GIEPVIMSAGELESERAG---EPGKLIRERYRTAS 130 (342)
Q Consensus 57 ~~hi~K~~l~~~~~~k~PlglgL~GPPG~GKTllaravA~~~---g~~~i~vs~~eL~s~~~G---EsEr~iR~~F~~A~ 130 (342)
+...+++|...-.. ...+++||||||+|||+|+.|+|+++ |..++.+++++|++.... +......+.++..
T Consensus 168 ~~~~~~~f~~~f~~--~~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l- 244 (329)
T PRK06835 168 ILEKCKNFIENFDK--NNENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLL- 244 (329)
T ss_pred HHHHHHHHHHHHhc--cCCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHh-
Confidence 44556667763222 23789999999999999999999886 889999999999864321 1111111112111
Q ss_pred HhhhhcCCceEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCC
Q 019334 131 QVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDF 204 (342)
Q Consensus 131 e~~~~~~~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~ 204 (342)
....+|+|||+..... + ......|.++++. ....+-++|+|||.+
T Consensus 245 ------~~~DLLIIDDlG~e~~----t------~~~~~~Lf~iin~-------------R~~~~k~tIiTSNl~ 289 (329)
T PRK06835 245 ------INCDLLIIDDLGTEKI----T------EFSKSELFNLINK-------------RLLRQKKMIISTNLS 289 (329)
T ss_pred ------ccCCEEEEeccCCCCC----C------HHHHHHHHHHHHH-------------HHHCCCCEEEECCCC
Confidence 2468999999977532 1 1122345555552 112356899999975
No 161
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.83 E-value=7.6e-10 Score=96.28 Aligned_cols=115 Identities=15% Similarity=0.204 Sum_probs=58.0
Q ss_pred EEeecCCCCCHHHHHHHHHHHhCCceEEeecc-cccc-cccCCcHHHHHHHHHHHH---HhhhhcCCceEEEeecccccC
Q 019334 77 LGIWGGKGQGKSFQTELIFQAMGIEPVIMSAG-ELES-ERAGEPGKLIRERYRTAS---QVVQNQGKMSCLMINDIDAGL 151 (342)
Q Consensus 77 lgL~GPPG~GKTllaravA~~~g~~~i~vs~~-eL~s-~~~GEsEr~iR~~F~~A~---e~~~~~~~PcILfIDEIDAg~ 151 (342)
|+|+|+||+|||++|+++|+.+|..|.+|... +|.- ...|.+ +|+... +..+-----.|+++|||...-
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~------v~~~~~~~f~~~~GPif~~ill~DEiNrap 75 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFP------VYDQETGEFEFRPGPIFTNILLADEINRAP 75 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEE------EEETTTTEEEEEE-TT-SSEEEEETGGGS-
T ss_pred EeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeee------eeccCCCeeEeecChhhhceeeecccccCC
Confidence 79999999999999999999999999998763 3432 112210 111000 000000013599999998865
Q ss_pred CCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCC-----CCccCCC
Q 019334 152 GRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFS-----TIYAPLI 212 (342)
Q Consensus 152 ~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~~-----~LdpaLl 212 (342)
++ +++.|++.|- ...|.++|.-- +.-++..||||-|..+ .|+.|++
T Consensus 76 pk------------tQsAlLeam~-Er~Vt~~g~~~--~lp~pf~ViATqNp~e~~Gty~Lpea~~ 126 (131)
T PF07726_consen 76 PK------------TQSALLEAME-ERQVTIDGQTY--PLPDPFFVIATQNPVEQEGTYPLPEAQL 126 (131)
T ss_dssp HH------------HHHHHHHHHH-HSEEEETTEEE--E--SS-EEEEEE-TT--S------HHHH
T ss_pred HH------------HHHHHHHHHH-cCeEEeCCEEE--ECCCcEEEEEecCccccCceecCCHHHh
Confidence 43 3445565554 23466655211 2135688999999877 4555543
No 162
>PRK08181 transposase; Validated
Probab=98.82 E-value=1e-08 Score=98.11 Aligned_cols=111 Identities=19% Similarity=0.182 Sum_probs=70.0
Q ss_pred HHHHHHHHHHhhcCCCCCeEEEeecCCCCCHHHHHHHHHH---HhCCceEEeecccccccccC-CcHHHHHHHHHHHHHh
Q 019334 57 LCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQ---AMGIEPVIMSAGELESERAG-EPGKLIRERYRTASQV 132 (342)
Q Consensus 57 ~~hi~K~~l~~~~~~k~PlglgL~GPPG~GKTllaravA~---~~g~~~i~vs~~eL~s~~~G-EsEr~iR~~F~~A~e~ 132 (342)
+..-+++|+. ....++|+||||||||.++.|+|. +.|..++.++.++|+..... ..+....+.++..
T Consensus 95 ~L~~~~~~~~------~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l--- 165 (269)
T PRK08181 95 AIAAGDSWLA------KGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKL--- 165 (269)
T ss_pred HHHHHHHHHh------cCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHH---
Confidence 3334456765 346799999999999999999985 44888888999998875311 1111122222221
Q ss_pred hhhcCCceEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCC
Q 019334 133 VQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDF 204 (342)
Q Consensus 133 ~~~~~~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~ 204 (342)
.++.+|+|||++..... . . ....|.++++. . ..+-++|.|||.+
T Consensus 166 ----~~~dLLIIDDlg~~~~~----~---~---~~~~Lf~lin~----------R----~~~~s~IiTSN~~ 209 (269)
T PRK08181 166 ----DKFDLLILDDLAYVTKD----Q---A---ETSVLFELISA----------R----YERRSILITANQP 209 (269)
T ss_pred ----hcCCEEEEeccccccCC----H---H---HHHHHHHHHHH----------H----HhCCCEEEEcCCC
Confidence 35889999999875431 1 1 12345555441 1 1124899999987
No 163
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.82 E-value=6.2e-08 Score=102.73 Aligned_cols=182 Identities=14% Similarity=0.194 Sum_probs=98.2
Q ss_pred ccccHHHHHHHHHH----HHHHHHHhhc-CCCCCeEEEeecCCCCCHHHHHHHHHHHhCCceEE-eecc------cc---
Q 019334 46 YYIAPVFMASLLCH----IVKNYIAHLL-NVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVI-MSAG------EL--- 110 (342)
Q Consensus 46 ~y~~~~f~d~l~~h----i~K~~l~~~~-~~k~PlglgL~GPPG~GKTllaravA~~~g~~~i~-vs~~------eL--- 110 (342)
-|-|..|-|.++.. .++.|+.... +..+-.+++|+||||||||++++++|++++..++. .+.. ..
T Consensus 77 KyrP~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~~~~~~~~~~~ 156 (637)
T TIGR00602 77 KYKPETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPTLPDFQKNDHKV 156 (637)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhhhccccccccc
Confidence 56666666655322 3566665422 22334679999999999999999999999976544 1111 11
Q ss_pred -------cccccCCcHHHHHHHHHHHHHhhh-----hcCCceEEEeecccccCCCCCCCcccchhHHHHHHHHh-hcCCC
Q 019334 111 -------ESERAGEPGKLIRERYRTASQVVQ-----NQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMN-LSDNP 177 (342)
Q Consensus 111 -------~s~~~GEsEr~iR~~F~~A~e~~~-----~~~~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~-llD~p 177 (342)
++.+ -..-+.+++....|..... ..+...||||||||....+ + ++ ....+|. ...
T Consensus 157 ~~s~~~~~~~~-~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r-~-------~~-~lq~lLr~~~~-- 224 (637)
T TIGR00602 157 TLSLESCFSNF-QSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYR-D-------TR-ALHEILRWKYV-- 224 (637)
T ss_pred chhhhhccccc-cchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchh-h-------HH-HHHHHHHHHhh--
Confidence 1111 1222334444444432110 1246789999999987643 2 11 2223332 111
Q ss_pred CccccCccccccCCCCCccEEEeeCCC--------CC-------CccCCCCCCCCcceecCC-CHHHHHHHHHHHhhcCC
Q 019334 178 TRVSIGQDWRESDITNRIPIIFTGNDF--------ST-------IYAPLIRDGRMEKFYWQP-NLEDILNIVHRMYEKDG 241 (342)
Q Consensus 178 ~~v~l~g~~~~~~~~~~V~VIatTNr~--------~~-------LdpaLlRpGRfD~~i~vP-~~~~R~~Il~~~~~~~~ 241 (342)
+ ..++|+|+++|.- +. |.++|+-.-|...+-+-| +...-...|+.++..+.
T Consensus 225 ------------e-~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv~~I~FnPia~t~l~K~L~rIl~~E~ 291 (637)
T TIGR00602 225 ------------S-IGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRVSNISFNPIAPTIMKKFLNRIVTIEA 291 (637)
T ss_pred ------------c-CCCceEEEEecCCccccccccccccchhcccCHhHhcccceeEEEeCCCCHHHHHHHHHHHHHhhh
Confidence 1 3467777776632 11 235777444555544544 56665555555544321
Q ss_pred --------C-CHHHHHHHhh
Q 019334 242 --------I-TKDEVGSIVK 252 (342)
Q Consensus 242 --------~-s~~di~~lvd 252 (342)
+ +.+.++.++.
T Consensus 292 ~~~~~~~~~p~~~~l~~I~~ 311 (637)
T TIGR00602 292 KKNGEKIKVPKKTSVELLCQ 311 (637)
T ss_pred hccccccccCCHHHHHHHHH
Confidence 2 3356666664
No 164
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=98.82 E-value=3.4e-08 Score=104.23 Aligned_cols=165 Identities=19% Similarity=0.151 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHHHHHhhcCCCC-CeEEEeecCCCCCHHHHHHHHHHHh--------------------------------
Q 019334 52 FMASLLCHIVKNYIAHLLNVKV-PLILGIWGGKGQGKSFQTELIFQAM-------------------------------- 98 (342)
Q Consensus 52 f~d~l~~hi~K~~l~~~~~~k~-PlglgL~GPPG~GKTllaravA~~~-------------------------------- 98 (342)
|.++++..-+|..+. +.-+.+ .-+|+|+||||||||++|+++++.+
T Consensus 3 f~~ivGq~~~~~al~-~~av~~~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~~~~~~~~~~~~~ 81 (633)
T TIGR02442 3 FTAIVGQEDLKLALL-LNAVDPRIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEEWCEECRRKYRPS 81 (633)
T ss_pred cchhcChHHHHHHHH-HHhhCCCCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccccChhhhhccccc
Confidence 556677776666665 222222 1369999999999999999999988
Q ss_pred ---CCceEEeecccccccccCCc--HHHHHH---HHHHHHHhhhhcCCceEEEeecccccCCCCCCCcccchhHHHHHHH
Q 019334 99 ---GIEPVIMSAGELESERAGEP--GKLIRE---RYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTL 170 (342)
Q Consensus 99 ---g~~~i~vs~~eL~s~~~GEs--Er~iR~---~F~~A~e~~~~~~~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tL 170 (342)
..+|+.+..+-..+..+|.- ++.++. .|+ ...+. ...-.|||||||+..-+ .++..|
T Consensus 82 ~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~-~G~L~--~A~~GiL~lDEi~~l~~------------~~q~~L 146 (633)
T TIGR02442 82 EQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQ-PGLLA--EAHRGILYIDEVNLLDD------------HLVDVL 146 (633)
T ss_pred ccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeec-Cccee--ecCCCeEEeChhhhCCH------------HHHHHH
Confidence 35677666555444455532 111110 010 00000 01235999999998742 244567
Q ss_pred HhhcCCC-CccccCccccccCCCCCccEEEeeCCC-CCCccCCCCCCCCcceecC---CCHHHHHHHHHHH
Q 019334 171 MNLSDNP-TRVSIGQDWRESDITNRIPIIFTGNDF-STIYAPLIRDGRMEKFYWQ---PNLEDILNIVHRM 236 (342)
Q Consensus 171 l~llD~p-~~v~l~g~~~~~~~~~~V~VIatTNr~-~~LdpaLlRpGRfD~~i~v---P~~~~R~~Il~~~ 236 (342)
++.|+.- ..|.-.|.- .....++.||+|+|-- ..|.++|+- ||+-.+.+ .+.++|.+|++..
T Consensus 147 l~~le~g~~~v~r~g~~--~~~~~~~~lIat~np~eg~l~~~L~d--R~~l~i~v~~~~~~~~~~~il~~~ 213 (633)
T TIGR02442 147 LDAAAMGVNRVEREGLS--VSHPARFVLIGTMNPEEGDLRPQLLD--RFGLCVDVAAPRDPEERVEIIRRR 213 (633)
T ss_pred HHHHhcCCEEEEECCce--eeecCCeEEEEecCCCCCCCCHHHHh--hcceEEEccCCCchHHHHHHHHHH
Confidence 7766632 123223311 1113578899999843 357778887 88876665 3568888888653
No 165
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=98.81 E-value=9.3e-08 Score=91.16 Aligned_cols=105 Identities=16% Similarity=0.237 Sum_probs=75.0
Q ss_pred CCCCeEEEeecCCCCCHHHHHHHHHHHh---CCceEEeecccccccccCCcHHHHHHHHHHHHHhhhhcCCceEEEeecc
Q 019334 71 VKVPLILGIWGGKGQGKSFQTELIFQAM---GIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDI 147 (342)
Q Consensus 71 ~k~PlglgL~GPPG~GKTllaravA~~~---g~~~i~vs~~eL~s~~~GEsEr~iR~~F~~A~e~~~~~~~PcILfIDEI 147 (342)
-.+..-+||||+.|||||+++||+..++ |+.+|.|+..+|.+ |-++++.-+ .+...=|||+||+
T Consensus 49 G~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L~~---------l~~l~~~l~----~~~~kFIlf~DDL 115 (249)
T PF05673_consen 49 GLPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDLGD---------LPELLDLLR----DRPYKFILFCDDL 115 (249)
T ss_pred CCCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHhcc---------HHHHHHHHh----cCCCCEEEEecCC
Confidence 3677899999999999999999999754 77889999888874 344444333 2456899999986
Q ss_pred cccCCCCC-CCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCCccC
Q 019334 148 DAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAP 210 (342)
Q Consensus 148 DAg~~r~~-~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~~~Ldpa 210 (342)
- |+ +.. -...|.++||| ++ +..-.+|.|.||+||-.-++.-
T Consensus 116 s-----Fe~~d~-------~yk~LKs~LeG----gl------e~~P~NvliyATSNRRHLv~E~ 157 (249)
T PF05673_consen 116 S-----FEEGDT-------EYKALKSVLEG----GL------EARPDNVLIYATSNRRHLVPES 157 (249)
T ss_pred C-----CCCCcH-------HHHHHHHHhcC----cc------ccCCCcEEEEEecchhhccchh
Confidence 4 33 111 12467777885 22 2225799999999998766643
No 166
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.80 E-value=3.8e-08 Score=95.70 Aligned_cols=85 Identities=19% Similarity=0.276 Sum_probs=58.0
Q ss_pred HHHHHHHHHHhhcCCCCCeEEEeecCCCCCHHHHHHHHHHHh---CCceEEeeccccccccc---CCcHHHHHHHHHHHH
Q 019334 57 LCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAM---GIEPVIMSAGELESERA---GEPGKLIRERYRTAS 130 (342)
Q Consensus 57 ~~hi~K~~l~~~~~~k~PlglgL~GPPG~GKTllaravA~~~---g~~~i~vs~~eL~s~~~---GEsEr~iR~~F~~A~ 130 (342)
+...+..|+......+.+.+++||||||||||+++.|+|.++ |.+...+..++|+.... ++. .+.+.+
T Consensus 139 ~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~--~~~~~l---- 212 (306)
T PRK08939 139 ALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDG--SVKEKI---- 212 (306)
T ss_pred HHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcC--cHHHHH----
Confidence 344556676643332356899999999999999999999887 88888888888875431 111 011111
Q ss_pred HhhhhcCCceEEEeeccccc
Q 019334 131 QVVQNQGKMSCLMINDIDAG 150 (342)
Q Consensus 131 e~~~~~~~PcILfIDEIDAg 150 (342)
+. -.+..+|+||||.+-
T Consensus 213 ~~---l~~~dlLiIDDiG~e 229 (306)
T PRK08939 213 DA---VKEAPVLMLDDIGAE 229 (306)
T ss_pred HH---hcCCCEEEEecCCCc
Confidence 11 235889999999764
No 167
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.80 E-value=1.3e-07 Score=99.90 Aligned_cols=171 Identities=15% Similarity=0.242 Sum_probs=103.4
Q ss_pred cccHHHHHHHHHHHHHHHHHh-hcCCCCCeEEEeecCCCCCHHHHHHHHHHHhCC-------------------------
Q 019334 47 YIAPVFMASLLCHIVKNYIAH-LLNVKVPLILGIWGGKGQGKSFQTELIFQAMGI------------------------- 100 (342)
Q Consensus 47 y~~~~f~d~l~~hi~K~~l~~-~~~~k~PlglgL~GPPG~GKTllaravA~~~g~------------------------- 100 (342)
|-|..|.|.+|..-+++.+.. +-.-+.|..+++|||+|+|||++|+++|+.+.+
T Consensus 11 yRP~~f~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~ 90 (614)
T PRK14971 11 YRPSTFESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSY 90 (614)
T ss_pred HCCCCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCC
Confidence 445566666655444444433 223478899999999999999999999998864
Q ss_pred ceEEeecccccccccCCcHHHHHHHHHHHHHhhhhcCCceEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCcc
Q 019334 101 EPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRV 180 (342)
Q Consensus 101 ~~i~vs~~eL~s~~~GEsEr~iR~~F~~A~e~~~~~~~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v 180 (342)
+++.+++.+ ..+-..||++...+... ..-+.--|++|||+|.... . -...|+..+.+|
T Consensus 91 n~~~ld~~~------~~~vd~Ir~li~~~~~~-P~~~~~KVvIIdea~~Ls~-----------~-a~naLLK~LEep--- 148 (614)
T PRK14971 91 NIHELDAAS------NNSVDDIRNLIEQVRIP-PQIGKYKIYIIDEVHMLSQ-----------A-AFNAFLKTLEEP--- 148 (614)
T ss_pred ceEEecccc------cCCHHHHHHHHHHHhhC-cccCCcEEEEEECcccCCH-----------H-HHHHHHHHHhCC---
Confidence 233333221 11235677777665322 1123445999999887631 1 123566665532
Q ss_pred ccCccccccCCCCCccEEEeeCCCCCCccCCCCCCCCcceec-CCCHHHHHHHHHHHhhcCCC--CHHHHHHHhh
Q 019334 181 SIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYW-QPNLEDILNIVHRMYEKDGI--TKDEVGSIVK 252 (342)
Q Consensus 181 ~l~g~~~~~~~~~~V~VIatTNr~~~LdpaLlRpGRfD~~i~-vP~~~~R~~Il~~~~~~~~~--s~~di~~lvd 252 (342)
...+.+|.+|+....|.++|+- |...+-+ .++.++-...++..+...++ +.+.+..++.
T Consensus 149 -----------p~~tifIL~tt~~~kIl~tI~S--Rc~iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~ 210 (614)
T PRK14971 149 -----------PSYAIFILATTEKHKILPTILS--RCQIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQ 210 (614)
T ss_pred -----------CCCeEEEEEeCCchhchHHHHh--hhheeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 2334455555566888888876 4433333 36777777788777766665 4444555543
No 168
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.80 E-value=2.1e-07 Score=92.12 Aligned_cols=181 Identities=12% Similarity=0.108 Sum_probs=112.1
Q ss_pred cccccccHHHHHHHHHHHHHHHHHhh-cCCCCCeEEEeecCCCCCHHHHHHHHHHHhCCce------EEee---------
Q 019334 43 QGDYYIAPVFMASLLCHIVKNYIAHL-LNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEP------VIMS--------- 106 (342)
Q Consensus 43 ~~~~y~~~~f~d~l~~hi~K~~l~~~-~~~k~PlglgL~GPPG~GKTllaravA~~~g~~~------i~vs--------- 106 (342)
+++...|..|-+.++..-++..+... -.-+.|-.++|+||+|+|||++|+.+|+.+-+.. ....
T Consensus 13 ~~~~~~P~~~~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c~~c 92 (351)
T PRK09112 13 LDGVPSPSENTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPASPVW 92 (351)
T ss_pred ccCCCCCCchhhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCCHHH
Confidence 45567788888888887777777653 3347889999999999999999999999987621 1100
Q ss_pred -------ccccc---ccc-c--CC-----cHHHHHHHHHHHHHhhhhcCCceEEEeecccccCCCCCCCcccchhHHHHH
Q 019334 107 -------AGELE---SER-A--GE-----PGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVG 168 (342)
Q Consensus 107 -------~~eL~---s~~-~--GE-----sEr~iR~~F~~A~e~~~~~~~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~ 168 (342)
-++++ .++ . |. +-..||++-+..... +..+..-|++|||+|..-. ...+
T Consensus 93 ~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~-~~~g~~rVviIDeAd~l~~-----------~aan- 159 (351)
T PRK09112 93 RQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQT-SGDGNWRIVIIDPADDMNR-----------NAAN- 159 (351)
T ss_pred HHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhc-cccCCceEEEEEchhhcCH-----------HHHH-
Confidence 01221 110 0 00 123455554333322 2257788999999998731 1122
Q ss_pred HHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCCccCCCCCCCCcceec-CCCHHHHHHHHHHHhhcCCCCHHHH
Q 019334 169 TLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYW-QPNLEDILNIVHRMYEKDGITKDEV 247 (342)
Q Consensus 169 tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~~~LdpaLlRpGRfD~~i~-vP~~~~R~~Il~~~~~~~~~s~~di 247 (342)
.|+..+. ++ ..++.+|..|+.++.|.|.+ |. |.-.+-+ .|+.++-.++|.......+++.+.+
T Consensus 160 aLLk~LE-------------Ep-p~~~~fiLit~~~~~llptI-rS-Rc~~i~l~pl~~~~~~~~L~~~~~~~~~~~~~~ 223 (351)
T PRK09112 160 AILKTLE-------------EP-PARALFILISHSSGRLLPTI-RS-RCQPISLKPLDDDELKKALSHLGSSQGSDGEIT 223 (351)
T ss_pred HHHHHHh-------------cC-CCCceEEEEECChhhccHHH-Hh-hccEEEecCCCHHHHHHHHHHhhcccCCCHHHH
Confidence 3554444 22 34566666678899998776 44 7744333 3788988888876443334556655
Q ss_pred HHHhh
Q 019334 248 GSIVK 252 (342)
Q Consensus 248 ~~lvd 252 (342)
..++.
T Consensus 224 ~~i~~ 228 (351)
T PRK09112 224 EALLQ 228 (351)
T ss_pred HHHHH
Confidence 55554
No 169
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=6.6e-08 Score=96.28 Aligned_cols=167 Identities=15% Similarity=0.242 Sum_probs=103.6
Q ss_pred hcccccccHHHH--HHHHHHHHHHHHHhhcCCCCCeEEEeecCCCCCHHHHHHHHHHHhCCc-----eEEeecc------
Q 019334 42 LQGDYYIAPVFM--ASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIE-----PVIMSAG------ 108 (342)
Q Consensus 42 ~~~~~y~~~~f~--d~l~~hi~K~~l~~~~~~k~PlglgL~GPPG~GKTllaravA~~~g~~-----~i~vs~~------ 108 (342)
.....|+|+.+- |--..++..-+.. ...-..|.-++||||||||||..++-+++++.-+ .+.|++-
T Consensus 9 vl~~~~iP~~l~~Re~ei~~l~~~l~~-~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~ 87 (366)
T COG1474 9 VLLEDYIPEELPHREEEINQLASFLAP-ALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPY 87 (366)
T ss_pred ccCCCCCcccccccHHHHHHHHHHHHH-HhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHH
Confidence 445666765532 2122233332222 3333667779999999999999999999888765 7888883
Q ss_pred ----ccccc-----ccCCcHHHHHHHHHHHHHhhhhcCCceEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCc
Q 019334 109 ----ELESE-----RAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTR 179 (342)
Q Consensus 109 ----eL~s~-----~~GEsEr~iR~~F~~A~e~~~~~~~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~ 179 (342)
+|.++ ..|-|-.. .|..-.+.....+..-||.+||+|.+..+.+ ..|.+++.-
T Consensus 88 ~i~~~i~~~~~~~p~~g~~~~~---~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~------------~~LY~L~r~--- 149 (366)
T COG1474 88 QVLSKILNKLGKVPLTGDSSLE---ILKRLYDNLSKKGKTVIVILDEVDALVDKDG------------EVLYSLLRA--- 149 (366)
T ss_pred HHHHHHHHHcCCCCCCCCchHH---HHHHHHHHHHhcCCeEEEEEcchhhhccccc------------hHHHHHHhh---
Confidence 34442 23444443 3444444444468899999999999986522 234555442
Q ss_pred cccCccccccCCCCCccEEEeeCCCC---CCccCCCCCCCCcceecCC-CHHHHHHHHHH
Q 019334 180 VSIGQDWRESDITNRIPIIFTGNDFS---TIYAPLIRDGRMEKFYWQP-NLEDILNIVHR 235 (342)
Q Consensus 180 v~l~g~~~~~~~~~~V~VIatTNr~~---~LdpaLlRpGRfD~~i~vP-~~~~R~~Il~~ 235 (342)
.... ..+|-||+.+|..+ .|||-+...=...++.|.| +.++-.+||+.
T Consensus 150 -------~~~~-~~~v~vi~i~n~~~~~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~ 201 (366)
T COG1474 150 -------PGEN-KVKVSIIAVSNDDKFLDYLDPRVKSSLGPSEIVFPPYTAEELYDILRE 201 (366)
T ss_pred -------cccc-ceeEEEEEEeccHHHHHHhhhhhhhccCcceeeeCCCCHHHHHHHHHH
Confidence 1122 46789999999874 5666544311112244556 88999999974
No 170
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.75 E-value=4.6e-07 Score=83.53 Aligned_cols=160 Identities=16% Similarity=0.171 Sum_probs=83.4
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHhCC-ceEE--e-----eccccc----cc----ccCCcH-HHHHHHHHHHHHhhh
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQAMGI-EPVI--M-----SAGELE----SE----RAGEPG-KLIRERYRTASQVVQ 134 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~~g~-~~i~--v-----s~~eL~----s~----~~GEsE-r~iR~~F~~A~e~~~ 134 (342)
+.+..++|+||||+|||++++.+++++.. .++. + +..+++ +. ..|.+. ..++++........
T Consensus 41 ~~~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~- 119 (269)
T TIGR03015 41 QREGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQF- 119 (269)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHH-
Confidence 34557889999999999999999998763 2221 1 111111 11 112221 22333332222222
Q ss_pred hcCCceEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCC---CCc-c-
Q 019334 135 NQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFS---TIY-A- 209 (342)
Q Consensus 135 ~~~~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~~---~Ld-p- 209 (342)
..+++++|+|||+|..... .......|.+... +....+.||.+++ ++ .|. |
T Consensus 120 ~~~~~~vliiDe~~~l~~~---------~~~~l~~l~~~~~--------------~~~~~~~vvl~g~-~~~~~~l~~~~ 175 (269)
T TIGR03015 120 AAGKRALLVVDEAQNLTPE---------LLEELRMLSNFQT--------------DNAKLLQIFLVGQ-PEFRETLQSPQ 175 (269)
T ss_pred hCCCCeEEEEECcccCCHH---------HHHHHHHHhCccc--------------CCCCeEEEEEcCC-HHHHHHHcCch
Confidence 2578999999999986310 1112223332111 1123455555543 22 111 1
Q ss_pred --CCCCCCCCcceecC--CCHHHHHHHHHHHhhc------CCCCHHHHHHHhhcCCCCc
Q 019334 210 --PLIRDGRMEKFYWQ--PNLEDILNIVHRMYEK------DGITKDEVGSIVKTFPNQA 258 (342)
Q Consensus 210 --aLlRpGRfD~~i~v--P~~~~R~~Il~~~~~~------~~~s~~di~~lvd~f~~~~ 258 (342)
++.+ |+...+.+ .+.++-.++++..++. ..++.+.++.+.....|-+
T Consensus 176 ~~~l~~--r~~~~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p 232 (269)
T TIGR03015 176 LQQLRQ--RIIASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIP 232 (269)
T ss_pred hHHHHh--heeeeeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcc
Confidence 1222 44444444 3778877777765542 2477788888876555544
No 171
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.74 E-value=5.1e-08 Score=102.31 Aligned_cols=156 Identities=16% Similarity=0.096 Sum_probs=94.2
Q ss_pred HHHHHhhcCCCCCe-EEEeecCCCCCHHHHHHHHHHHhCC--ceEEeecccccccccCCcHHHHHHHHHHHH-H----hh
Q 019334 62 KNYIAHLLNVKVPL-ILGIWGGKGQGKSFQTELIFQAMGI--EPVIMSAGELESERAGEPGKLIRERYRTAS-Q----VV 133 (342)
Q Consensus 62 K~~l~~~~~~k~Pl-glgL~GPPG~GKTllaravA~~~g~--~~i~vs~~eL~s~~~GEsEr~iR~~F~~A~-e----~~ 133 (342)
|..|. +..+.+-+ +|+|.|+||+|||++|+++++.+.. +|+.+..+...+...|.- .|...+.... . .+
T Consensus 4 ~~Al~-l~av~p~~g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~i--dl~~~~~~g~~~~~~G~L 80 (589)
T TIGR02031 4 KLALT-LLAVDPSLGGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGI--DVEESLAGGQRVTQPGLL 80 (589)
T ss_pred HHHHH-HhccCCCcceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccch--hhhhhhhcCcccCCCCCe
Confidence 44444 44445444 6999999999999999999998764 588887543334444431 1111111000 0 00
Q ss_pred hhcCCceEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCC-ccccCccccccCCCCCccEEEeeCCCC---CCcc
Q 019334 134 QNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPT-RVSIGQDWRESDITNRIPIIFTGNDFS---TIYA 209 (342)
Q Consensus 134 ~~~~~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~-~v~l~g~~~~~~~~~~V~VIatTNr~~---~Ldp 209 (342)
. +..-.+||||||+..-+ .++..|++.|+.-. .+.-.|.- .....+..||+|+|..+ .|++
T Consensus 81 ~-~A~~GvL~lDEi~rl~~------------~~q~~Ll~al~~g~v~i~r~G~~--~~~p~~f~lIAt~np~e~~g~L~~ 145 (589)
T TIGR02031 81 D-EAPRGVLYVDMANLLDD------------GLSNRLLQALDEGVVIVEREGIS--VVHPAKFALIATYDPAEGGGGLPD 145 (589)
T ss_pred e-eCCCCcEeccchhhCCH------------HHHHHHHHHHHcCCeEEEECCCc--eeecCceEEEEecCCccccCCCCH
Confidence 0 01124999999998742 24556777776311 11111211 11124678899888776 7888
Q ss_pred CCCCCCCCcceec---CCCHHHHHHHHHHHh
Q 019334 210 PLIRDGRMEKFYW---QPNLEDILNIVHRMY 237 (342)
Q Consensus 210 aLlRpGRfD~~i~---vP~~~~R~~Il~~~~ 237 (342)
+|+. ||+-.+. +|+.++|.+|++..+
T Consensus 146 ~Lld--Rf~l~v~~~~~~~~~er~eil~~~~ 174 (589)
T TIGR02031 146 HLLD--RLALHVSLEDVASQDLRVEIVRRER 174 (589)
T ss_pred HHHH--hccCeeecCCCCCHHHHHHHHHHHH
Confidence 8888 8987554 488999999997654
No 172
>PRK06526 transposase; Provisional
Probab=98.73 E-value=1.3e-08 Score=96.40 Aligned_cols=73 Identities=12% Similarity=0.108 Sum_probs=49.1
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHH---hCCceEEeecccccccccC-CcHHHHHHHHHHHHHhhhhcCCceEEEeecc
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQA---MGIEPVIMSAGELESERAG-EPGKLIRERYRTASQVVQNQGKMSCLMINDI 147 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~---~g~~~i~vs~~eL~s~~~G-EsEr~iR~~F~~A~e~~~~~~~PcILfIDEI 147 (342)
+.+..++|+||||||||.+|.+++.+ .|..++.++.+++++.... .....+...+.. -.++.+|+|||+
T Consensus 96 ~~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~-------l~~~dlLIIDD~ 168 (254)
T PRK06526 96 TGKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVK-------LGRYPLLIVDEV 168 (254)
T ss_pred hcCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHH-------hccCCEEEEccc
Confidence 34678999999999999999999876 4777777788877764321 011111111211 134789999999
Q ss_pred cccC
Q 019334 148 DAGL 151 (342)
Q Consensus 148 DAg~ 151 (342)
+...
T Consensus 169 g~~~ 172 (254)
T PRK06526 169 GYIP 172 (254)
T ss_pred ccCC
Confidence 8764
No 173
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.73 E-value=2.1e-07 Score=89.43 Aligned_cols=170 Identities=16% Similarity=0.186 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHHHHHh-hcCCCCCeEEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccc--cccCC--cHHHHHHHH
Q 019334 52 FMASLLCHIVKNYIAH-LLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELES--ERAGE--PGKLIRERY 126 (342)
Q Consensus 52 f~d~l~~hi~K~~l~~-~~~~k~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s--~~~GE--sEr~iR~~F 126 (342)
|.|.++..-++..+.. +-.-+.|..++++||+|+|||++|+++|+.+-+....-+-+++.. ..-|. +=..||++-
T Consensus 3 ~~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~ir~~~ 82 (313)
T PRK05564 3 FHTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDIRNII 82 (313)
T ss_pred hhhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHHHHHH
Confidence 4455554444444433 223478899999999999999999999998754321111222211 11121 123577776
Q ss_pred HHHHHhhhhcCCceEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCC
Q 019334 127 RTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFST 206 (342)
Q Consensus 127 ~~A~e~~~~~~~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~~~ 206 (342)
+.+.. .+..+.--|++|||.|..-. . -...|+..+.+| ..++.+|.+|+.++.
T Consensus 83 ~~~~~-~p~~~~~kv~iI~~ad~m~~-----------~-a~naLLK~LEep--------------p~~t~~il~~~~~~~ 135 (313)
T PRK05564 83 EEVNK-KPYEGDKKVIIIYNSEKMTE-----------Q-AQNAFLKTIEEP--------------PKGVFIILLCENLEQ 135 (313)
T ss_pred HHHhc-CcccCCceEEEEechhhcCH-----------H-HHHHHHHHhcCC--------------CCCeEEEEEeCChHh
Confidence 55432 22245677999999987621 1 122455554532 456777777788999
Q ss_pred CccCCCCCCCCcceecC-CCHHHHHHHHHHHhhcCCCCHHHHHHHhh
Q 019334 207 IYAPLIRDGRMEKFYWQ-PNLEDILNIVHRMYEKDGITKDEVGSIVK 252 (342)
Q Consensus 207 LdpaLlRpGRfD~~i~v-P~~~~R~~Il~~~~~~~~~s~~di~~lvd 252 (342)
|.|.++= |--.+.+. |+.++-...++..+. +++.++++.++.
T Consensus 136 ll~TI~S--Rc~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~l~~ 178 (313)
T PRK05564 136 ILDTIKS--RCQIYKLNRLSKEEIEKFISYKYN--DIKEEEKKSAIA 178 (313)
T ss_pred CcHHHHh--hceeeeCCCcCHHHHHHHHHHHhc--CCCHHHHHHHHH
Confidence 9998765 44333333 677776666654432 566666666654
No 174
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.72 E-value=3.7e-07 Score=90.87 Aligned_cols=165 Identities=12% Similarity=0.087 Sum_probs=103.4
Q ss_pred ccccccHHHHHHHHHHHHHHHHHhh-cCCCCCeEEEeecCCCCCHHHHHHHHHHHhCCceE-----------Ee------
Q 019334 44 GDYYIAPVFMASLLCHIVKNYIAHL-LNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPV-----------IM------ 105 (342)
Q Consensus 44 ~~~y~~~~f~d~l~~hi~K~~l~~~-~~~k~PlglgL~GPPG~GKTllaravA~~~g~~~i-----------~v------ 105 (342)
++..-|.+|-|.++..-++..+... ..-+.|-.++++||+|+||+++|.++|+.+-+.-- .+
T Consensus 10 ~~~~~P~~~~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c 89 (365)
T PRK07471 10 EGAPHPRETTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDH 89 (365)
T ss_pred cCCCCCCchhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCC
Confidence 3445666777777777666666543 34488999999999999999999999988743210 00
Q ss_pred ---------ecccccc--c-ccCC--------cHHHHHHHHHHHHHhhhhcCCceEEEeecccccCCCCCCCcccchhHH
Q 019334 106 ---------SAGELES--E-RAGE--------PGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQI 165 (342)
Q Consensus 106 ---------s~~eL~s--~-~~GE--------sEr~iR~~F~~A~e~~~~~~~PcILfIDEIDAg~~r~~~t~~~v~~q~ 165 (342)
+-++++- . +-+. +=..||++-+.+.... ..+.|-|++|||+|..-. .
T Consensus 90 ~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~-~~~~~kVviIDead~m~~-----------~- 156 (365)
T PRK07471 90 PVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTA-AEGGWRVVIVDTADEMNA-----------N- 156 (365)
T ss_pred hHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCc-ccCCCEEEEEechHhcCH-----------H-
Confidence 0011110 0 0011 1134666665554322 257899999999997621 1
Q ss_pred HHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCCccCCCCCCCCcceecC-CCHHHHHHHHHHHh
Q 019334 166 VVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQ-PNLEDILNIVHRMY 237 (342)
Q Consensus 166 V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~~~LdpaLlRpGRfD~~i~v-P~~~~R~~Il~~~~ 237 (342)
....|+..+. ++ ..++.+|.+|++++.|.|.++. |...+-+. |+.++-.++|....
T Consensus 157 aanaLLK~LE-------------ep-p~~~~~IL~t~~~~~llpti~S--Rc~~i~l~~l~~~~i~~~L~~~~ 213 (365)
T PRK07471 157 AANALLKVLE-------------EP-PARSLFLLVSHAPARLLPTIRS--RCRKLRLRPLAPEDVIDALAAAG 213 (365)
T ss_pred HHHHHHHHHh-------------cC-CCCeEEEEEECCchhchHHhhc--cceEEECCCCCHHHHHHHHHHhc
Confidence 1224554444 22 3466778889999999877654 77665554 68888888886543
No 175
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=98.71 E-value=3.6e-08 Score=97.27 Aligned_cols=166 Identities=16% Similarity=0.150 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHHHHHhhcCCCC-CeEEEeecCCCCCHHHHHHHHHHHh-------CCceE--------------------
Q 019334 52 FMASLLCHIVKNYIAHLLNVKV-PLILGIWGGKGQGKSFQTELIFQAM-------GIEPV-------------------- 103 (342)
Q Consensus 52 f~d~l~~hi~K~~l~~~~~~k~-PlglgL~GPPG~GKTllaravA~~~-------g~~~i-------------------- 103 (342)
|...++..-+|..+. +.-+.+ .-+++|.||||+|||++++++++-+ +.++=
T Consensus 3 f~~ivgq~~~~~al~-~~~~~~~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 81 (337)
T TIGR02030 3 FTAIVGQDEMKLALL-LNVIDPKIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEMMCEEVRIRVDSQ 81 (337)
T ss_pred ccccccHHHHHHHHH-HHhcCCCCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccccChHHhhhhhcc
Confidence 556677777777664 222222 3469999999999999999999887 33221
Q ss_pred -------------EeecccccccccCCc--HHHHH---HHHHHHHHhhhhcCCceEEEeecccccCCCCCCCcccchhHH
Q 019334 104 -------------IMSAGELESERAGEP--GKLIR---ERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQI 165 (342)
Q Consensus 104 -------------~vs~~eL~s~~~GEs--Er~iR---~~F~~A~e~~~~~~~PcILfIDEIDAg~~r~~~t~~~v~~q~ 165 (342)
.|..+--.+...|.- ++.++ ..|+.- ... +...-+||||||+..-+ .
T Consensus 82 ~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~G--lL~-~A~~GvL~lDEi~~L~~------------~ 146 (337)
T TIGR02030 82 EPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPG--LLA-RANRGILYIDEVNLLED------------H 146 (337)
T ss_pred cccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecC--cce-eccCCEEEecChHhCCH------------H
Confidence 111111111222321 01000 001100 000 11246999999998632 2
Q ss_pred HHHHHHhhcCCC-CccccCccccccCCCCCccEEEeeCCCC-CCccCCCCCCCCcceecC--CC-HHHHHHHHHHHh
Q 019334 166 VVGTLMNLSDNP-TRVSIGQDWRESDITNRIPIIFTGNDFS-TIYAPLIRDGRMEKFYWQ--PN-LEDILNIVHRMY 237 (342)
Q Consensus 166 V~~tLl~llD~p-~~v~l~g~~~~~~~~~~V~VIatTNr~~-~LdpaLlRpGRfD~~i~v--P~-~~~R~~Il~~~~ 237 (342)
+++.|++.|+.- ..+.-+|... ....++.+|+|+|-.+ .|+++|+. ||.-.+.+ |. .++|.+|++...
T Consensus 147 ~Q~~Ll~~l~~g~~~v~r~G~~~--~~~~r~iviat~np~eg~l~~~Lld--Rf~l~i~l~~p~~~eer~eIL~~~~ 219 (337)
T TIGR02030 147 LVDVLLDVAASGWNVVEREGISI--RHPARFVLVGSGNPEEGELRPQLLD--RFGLHAEIRTVRDVELRVEIVERRT 219 (337)
T ss_pred HHHHHHHHHHhCCeEEEECCEEE--EcCCCEEEEeccccccCCCCHHHHh--hcceEEECCCCCCHHHHHHHHHhhh
Confidence 455677777531 1233344321 2135778888888555 67888887 88866654 54 489999998643
No 176
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.66 E-value=2.8e-08 Score=102.26 Aligned_cols=139 Identities=14% Similarity=0.147 Sum_probs=83.0
Q ss_pred EEEeecCCCCCHHHHHHHHHHHhCCc-eEEe---ecccc-----cccccCCcHHHHHHHHHHHHHhhhhcCCceEEEeec
Q 019334 76 ILGIWGGKGQGKSFQTELIFQAMGIE-PVIM---SAGEL-----ESERAGEPGKLIRERYRTASQVVQNQGKMSCLMIND 146 (342)
Q Consensus 76 glgL~GPPG~GKTllaravA~~~g~~-~i~v---s~~eL-----~s~~~GEsEr~iR~~F~~A~e~~~~~~~PcILfIDE 146 (342)
-|+|+|+||+|||.+|+++++...-. ++.. ++..| .++..|+ .. + ++.... ...--+++|||
T Consensus 238 ~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~~~~~~g~--~~----~-~~G~l~--~A~~Gil~iDE 308 (509)
T smart00350 238 NILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVTRDPETRE--FT----L-EGGALV--LADNGVCCIDE 308 (509)
T ss_pred eEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccceEccCcce--EE----e-cCccEE--ecCCCEEEEec
Confidence 59999999999999999999876532 2221 22222 1111121 11 1 111111 12246899999
Q ss_pred ccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCC-------------CCccCCCC
Q 019334 147 IDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFS-------------TIYAPLIR 213 (342)
Q Consensus 147 IDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~~-------------~LdpaLlR 213 (342)
||..-.. ....|++.|..- .|++.-.+.......+.-||||+|-.. .|+|+|+-
T Consensus 309 i~~l~~~------------~q~~L~e~me~~-~i~i~k~G~~~~l~~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLs 375 (509)
T smart00350 309 FDKMDDS------------DRTAIHEAMEQQ-TISIAKAGITTTLNARCSVLAAANPIGGRYDPKLTPEENIDLPAPILS 375 (509)
T ss_pred hhhCCHH------------HHHHHHHHHhcC-EEEEEeCCEEEEecCCcEEEEEeCCCCcccCCCcChhhccCCChHHhC
Confidence 9997421 233445554421 122211011112235788999999653 59999998
Q ss_pred CCCCcceecC---CCHHHHHHHHHHHhh
Q 019334 214 DGRMEKFYWQ---PNLEDILNIVHRMYE 238 (342)
Q Consensus 214 pGRfD~~i~v---P~~~~R~~Il~~~~~ 238 (342)
|||-++.+ |+.+.+.+|++..+.
T Consensus 376 --RFdLi~~~~d~~~~~~d~~i~~~i~~ 401 (509)
T smart00350 376 --RFDLLFVVLDEVDEERDRELAKHVVD 401 (509)
T ss_pred --ceeeEEEecCCCChHHHHHHHHHHHH
Confidence 99997764 999999999986543
No 177
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.65 E-value=1.7e-07 Score=77.74 Aligned_cols=73 Identities=15% Similarity=0.247 Sum_probs=45.7
Q ss_pred EEeecCCCCCHHHHHHHHHHHh---CCceEEeecccccc----------------------cccCCcHHHHHHHHHHHHH
Q 019334 77 LGIWGGKGQGKSFQTELIFQAM---GIEPVIMSAGELES----------------------ERAGEPGKLIRERYRTASQ 131 (342)
Q Consensus 77 lgL~GPPG~GKTllaravA~~~---g~~~i~vs~~eL~s----------------------~~~GEsEr~iR~~F~~A~e 131 (342)
++|+||||||||+++..++..+ +-+.+.++..+-.+ .+.++.... ...+.+..
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 79 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAA--RLLSKAER 79 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHH--HHHHHHHH
Confidence 6899999999999999999887 45666665543322 122222111 11111111
Q ss_pred hhhhcCCceEEEeecccccCC
Q 019334 132 VVQNQGKMSCLMINDIDAGLG 152 (342)
Q Consensus 132 ~~~~~~~PcILfIDEIDAg~~ 152 (342)
.+ ....|.+|+|||+.+...
T Consensus 80 ~~-~~~~~~~lviDe~~~~~~ 99 (165)
T cd01120 80 LR-ERGGDDLIILDELTRLVR 99 (165)
T ss_pred HH-hCCCCEEEEEEcHHHHHH
Confidence 22 256799999999998764
No 178
>PRK13531 regulatory ATPase RavA; Provisional
Probab=98.63 E-value=7.4e-08 Score=99.45 Aligned_cols=150 Identities=16% Similarity=0.183 Sum_probs=77.1
Q ss_pred eEEEeecCCCCCHHHHHHHHHHHhCC--ceE--Ee---ecccccccccCCcHHHH--HHHHHHHHHhhhhcC---CceEE
Q 019334 75 LILGIWGGKGQGKSFQTELIFQAMGI--EPV--IM---SAGELESERAGEPGKLI--RERYRTASQVVQNQG---KMSCL 142 (342)
Q Consensus 75 lglgL~GPPG~GKTllaravA~~~g~--~~i--~v---s~~eL~s~~~GEsEr~i--R~~F~~A~e~~~~~~---~PcIL 142 (342)
.-++|+||||||||++|++++..++. +|. .+ ..++|+... +-+.. ...|.... .| ...+|
T Consensus 40 ~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~l---~i~~~~~~g~f~r~~-----~G~L~~A~lL 111 (498)
T PRK13531 40 ESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPL---SIQALKDEGRYQRLT-----SGYLPEAEIV 111 (498)
T ss_pred CCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCcH---HHhhhhhcCchhhhc-----CCccccccEE
Confidence 45899999999999999999998764 233 22 233443221 01111 12232211 12 24599
Q ss_pred EeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCCcc------CCCCCCC
Q 019334 143 MINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYA------PLIRDGR 216 (342)
Q Consensus 143 fIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~~~Ldp------aLlRpGR 216 (342)
|+|||...- ..+...|++.|.. ..|..++. ..+ .+.-++++|||. ||. +|.= |
T Consensus 112 fLDEI~ras------------p~~QsaLLeam~E-r~~t~g~~--~~~-lp~rfiv~ATN~---LPE~g~~leAL~D--R 170 (498)
T PRK13531 112 FLDEIWKAG------------PAILNTLLTAINE-RRFRNGAH--EEK-IPMRLLVTASNE---LPEADSSLEALYD--R 170 (498)
T ss_pred eecccccCC------------HHHHHHHHHHHHh-CeEecCCe--EEe-CCCcEEEEECCC---CcccCCchHHhHh--h
Confidence 999996321 2345677777742 22333331 111 222234455563 443 3333 4
Q ss_pred CcceecC--CC-HHHHHHHHHHHhh--------cCCCCHHHHHHHhhc
Q 019334 217 MEKFYWQ--PN-LEDILNIVHRMYE--------KDGITKDEVGSIVKT 253 (342)
Q Consensus 217 fD~~i~v--P~-~~~R~~Il~~~~~--------~~~~s~~di~~lvd~ 253 (342)
|--.+++ |+ .++-.+||..... ..-++.+|+.++-..
T Consensus 171 Fliri~vp~l~~~~~e~~lL~~~~~~~~~~~~~~~vis~eel~~lq~~ 218 (498)
T PRK13531 171 MLIRLWLDKVQDKANFRSMLTSQQDENDNPVPASLQITDEEYQQWQKE 218 (498)
T ss_pred EEEEEECCCCCchHHHHHHHHcccccccCCCcccCCCCHHHHHHHHHH
Confidence 4223455 33 3455677765321 112677877776543
No 179
>PRK09183 transposase/IS protein; Provisional
Probab=98.63 E-value=3.9e-08 Score=93.13 Aligned_cols=73 Identities=15% Similarity=0.112 Sum_probs=49.7
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHH---hCCceEEeecccccccccC-CcHHHHHHHHHHHHHhhhhcCCceEEEeecc
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQA---MGIEPVIMSAGELESERAG-EPGKLIRERYRTASQVVQNQGKMSCLMINDI 147 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~---~g~~~i~vs~~eL~s~~~G-EsEr~iR~~F~~A~e~~~~~~~PcILfIDEI 147 (342)
.....++|+||||||||+++.+++.+ .|..+..++..++...+.. ..+..+...|.... ..|++|+|||+
T Consensus 100 ~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~~------~~~dlLiiDdl 173 (259)
T PRK09183 100 ERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRGV------MAPRLLIIDEI 173 (259)
T ss_pred hcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHHh------cCCCEEEEccc
Confidence 34467999999999999999999755 4777777888887754321 11112333443321 35889999999
Q ss_pred ccc
Q 019334 148 DAG 150 (342)
Q Consensus 148 DAg 150 (342)
+..
T Consensus 174 g~~ 176 (259)
T PRK09183 174 GYL 176 (259)
T ss_pred ccC
Confidence 764
No 180
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.63 E-value=2.1e-07 Score=76.40 Aligned_cols=99 Identities=16% Similarity=0.225 Sum_probs=61.3
Q ss_pred CeEEEeecCCCCCHHHHHHHHHHHh--------CCceEEeecccccc--------------ccc-CCcHHHHHHHHHHHH
Q 019334 74 PLILGIWGGKGQGKSFQTELIFQAM--------GIEPVIMSAGELES--------------ERA-GEPGKLIRERYRTAS 130 (342)
Q Consensus 74 PlglgL~GPPG~GKTllaravA~~~--------g~~~i~vs~~eL~s--------------~~~-GEsEr~iR~~F~~A~ 130 (342)
...+.|+||||||||++++.++.++ ..+++.++.+.--+ ... +.+...+.+.+..+.
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 4678999999999999999999988 78888887744331 111 123344444444443
Q ss_pred HhhhhcCCceEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCC
Q 019334 131 QVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGND 203 (342)
Q Consensus 131 e~~~~~~~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr 203 (342)
+ +....+|+|||+|... + +.+...|..++| ..+++||.+++.
T Consensus 84 ~----~~~~~~lviDe~~~l~-~----------~~~l~~l~~l~~----------------~~~~~vvl~G~~ 125 (131)
T PF13401_consen 84 D----RRRVVLLVIDEADHLF-S----------DEFLEFLRSLLN----------------ESNIKVVLVGTP 125 (131)
T ss_dssp H----HCTEEEEEEETTHHHH-T----------HHHHHHHHHHTC----------------SCBEEEEEEESS
T ss_pred H----hcCCeEEEEeChHhcC-C----------HHHHHHHHHHHh----------------CCCCeEEEEECh
Confidence 3 2334799999999964 1 234556665555 245677776654
No 181
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=98.59 E-value=7.8e-08 Score=100.78 Aligned_cols=153 Identities=14% Similarity=0.136 Sum_probs=88.9
Q ss_pred CeEEEeecCCCCCHHHHHHHHHHHhC---CceEEeeccccc-----ccccCCc----HHHHHHHHHHHHHhhhhcCCceE
Q 019334 74 PLILGIWGGKGQGKSFQTELIFQAMG---IEPVIMSAGELE-----SERAGEP----GKLIRERYRTASQVVQNQGKMSC 141 (342)
Q Consensus 74 PlglgL~GPPG~GKTllaravA~~~g---~~~i~vs~~eL~-----s~~~GEs----Er~iR~~F~~A~e~~~~~~~PcI 141 (342)
+.-|+|+|++||||+++|+++..... -+|+.++++.+- +.+.|.- ..--...|+.| ....
T Consensus 348 ~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~~~~~elfg~~~~~~~~~~~g~~~~a--------~~Gt 419 (638)
T PRK11388 348 SFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDEALAEEFLGSDRTDSENGRLSKFELA--------HGGT 419 (638)
T ss_pred CCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChHHHHHHhcCCCCcCccCCCCCceeEC--------CCCE
Confidence 34489999999999999999987654 699999987653 2333321 10000112222 3578
Q ss_pred EEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCCccCCCCCCCCcc--
Q 019334 142 LMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEK-- 219 (342)
Q Consensus 142 LfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~~~LdpaLlRpGRfD~-- 219 (342)
|||||||..-. .++..|+..+++-....+++. ....-++-||+|||+.- ..+...|+|.+
T Consensus 420 L~ldei~~l~~------------~~Q~~Ll~~l~~~~~~~~~~~---~~~~~~~riI~~t~~~l---~~~~~~~~f~~dL 481 (638)
T PRK11388 420 LFLEKVEYLSP------------ELQSALLQVLKTGVITRLDSR---RLIPVDVRVIATTTADL---AMLVEQNRFSRQL 481 (638)
T ss_pred EEEcChhhCCH------------HHHHHHHHHHhcCcEEeCCCC---ceEEeeEEEEEeccCCH---HHHHhcCCChHHH
Confidence 99999999742 234456666653221112220 01012577999998753 45667788854
Q ss_pred -------eecCCCHHHHH-HHHH---HHhh--------cCCCCHHHHHHHhh
Q 019334 220 -------FYWQPNLEDIL-NIVH---RMYE--------KDGITKDEVGSIVK 252 (342)
Q Consensus 220 -------~i~vP~~~~R~-~Il~---~~~~--------~~~~s~~di~~lvd 252 (342)
.+.+|...+|. +|-. .++. ...++.+-++.|..
T Consensus 482 ~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~ 533 (638)
T PRK11388 482 YYALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALARLVS 533 (638)
T ss_pred hhhhceeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHHHHHHHHc
Confidence 23468877774 3432 2221 12366666666654
No 182
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=98.59 E-value=9.5e-08 Score=78.54 Aligned_cols=106 Identities=20% Similarity=0.241 Sum_probs=57.8
Q ss_pred EEeecCCCCCHHHHHHHHHHHhCCceEEeecccccccccCCcHHHHHHHHHHHHHhhhhcCCceEEEeecccccCCCCCC
Q 019334 77 LGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGN 156 (342)
Q Consensus 77 lgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~~~GEsEr~iR~~F~~A~e~~~~~~~PcILfIDEIDAg~~r~~~ 156 (342)
|.||||||||||++|+.+|+.+.-.+-.-....++.. .+....=+-| +++|+ ++|||+.+.-...
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~~~~~~~~vy~~---~~~~~~w~gY---------~~q~v-vi~DD~~~~~~~~-- 65 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHIGEPTKDSVYTR---NPGDKFWDGY---------QGQPV-VIIDDFGQDNDGY-- 65 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHhccCCCCcEEeC---CCccchhhcc---------CCCcE-EEEeecCcccccc--
Confidence 5799999999999999999888754422223344332 1222222233 35555 5679988754221
Q ss_pred CcccchhHHHHHHHHhhcC-CCCccccCccccccCCCCCccEEEeeCC
Q 019334 157 TQMTVNNQIVVGTLMNLSD-NPTRVSIGQDWRESDITNRIPIIFTGND 203 (342)
Q Consensus 157 t~~~v~~q~V~~tLl~llD-~p~~v~l~g~~~~~~~~~~V~VIatTNr 203 (342)
. .. ....|+.+++ +|-.+.+.+.-.....-....||+|||.
T Consensus 66 -~----~~-~~~~l~~l~s~~~~~~~~a~~~~K~~~~~s~~vi~tsN~ 107 (107)
T PF00910_consen 66 -N----YS-DESELIRLISSNPFQPNMADLEDKGTPFNSKLVIITSNF 107 (107)
T ss_pred -c----hH-HHHHHHHHHhcCCcccccccHhhCCCccCCCEEEEcCCC
Confidence 1 11 3456777777 3332322221000011235789999983
No 183
>PRK04132 replication factor C small subunit; Provisional
Probab=98.56 E-value=8e-07 Score=96.97 Aligned_cols=152 Identities=17% Similarity=0.195 Sum_probs=106.7
Q ss_pred CCCCe-EEEeec--CCCCCHHHHHHHHHHHh-----CCceEEeecccccccccCCcHHHHHHHHHHHHHhhhhcC-CceE
Q 019334 71 VKVPL-ILGIWG--GKGQGKSFQTELIFQAM-----GIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQG-KMSC 141 (342)
Q Consensus 71 ~k~Pl-glgL~G--PPG~GKTllaravA~~~-----g~~~i~vs~~eL~s~~~GEsEr~iR~~F~~A~e~~~~~~-~PcI 141 (342)
+.+|. --+..| |.+.|||++|+|+|+++ +.+++.+++++--+ -..||+...+++......+ +.-|
T Consensus 560 ~~~~~~~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rg------id~IR~iIk~~a~~~~~~~~~~KV 633 (846)
T PRK04132 560 LHVPGYHNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERG------INVIREKVKEFARTKPIGGASFKI 633 (846)
T ss_pred eccCchhhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCccc------HHHHHHHHHHHHhcCCcCCCCCEE
Confidence 34442 234568 99999999999999997 67899999997532 2478888777654332111 3479
Q ss_pred EEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCCccCCCCCCCCccee
Q 019334 142 LMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFY 221 (342)
Q Consensus 142 LfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~~~LdpaLlRpGRfD~~i 221 (342)
+||||+|..-. . -+..|+..|.. . ...+++|.+||.++.|.|+|+- |.-.+-
T Consensus 634 vIIDEaD~Lt~---------~---AQnALLk~lEe-------------p-~~~~~FILi~N~~~kIi~tIrS--RC~~i~ 685 (846)
T PRK04132 634 IFLDEADALTQ---------D---AQQALRRTMEM-------------F-SSNVRFILSCNYSSKIIEPIQS--RCAIFR 685 (846)
T ss_pred EEEECcccCCH---------H---HHHHHHHHhhC-------------C-CCCeEEEEEeCChhhCchHHhh--hceEEe
Confidence 99999999842 1 12345555442 2 4678999999999999999886 665544
Q ss_pred cC-CCHHHHHHHHHHHhhcCC--CCHHHHHHHhhcCCC
Q 019334 222 WQ-PNLEDILNIVHRMYEKDG--ITKDEVGSIVKTFPN 256 (342)
Q Consensus 222 ~v-P~~~~R~~Il~~~~~~~~--~s~~di~~lvd~f~~ 256 (342)
+- |+.++-..+|+.+....+ ++.+.+..++....|
T Consensus 686 F~~ls~~~i~~~L~~I~~~Egi~i~~e~L~~Ia~~s~G 723 (846)
T PRK04132 686 FRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEG 723 (846)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCC
Confidence 43 678888888887777665 467777777755444
No 184
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.53 E-value=2.8e-06 Score=83.46 Aligned_cols=137 Identities=16% Similarity=0.139 Sum_probs=89.6
Q ss_pred CCCCeEEEeecCCCCCHHHHHHHHHHHhCCce-E---------------Eeecccccc--c-ccC--CcHHHHHHHHHHH
Q 019334 71 VKVPLILGIWGGKGQGKSFQTELIFQAMGIEP-V---------------IMSAGELES--E-RAG--EPGKLIRERYRTA 129 (342)
Q Consensus 71 ~k~PlglgL~GPPG~GKTllaravA~~~g~~~-i---------------~vs~~eL~s--~-~~G--EsEr~iR~~F~~A 129 (342)
-+.|..++++||+|+|||++|+++|+.+-+.- . .-+-++++- + ..+ -+=..||++-+.+
T Consensus 19 ~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~l~~~~ 98 (328)
T PRK05707 19 GRHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVRELVSFV 98 (328)
T ss_pred CCcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHHHHHHH
Confidence 37899999999999999999999999987631 0 001122221 0 001 1235778877666
Q ss_pred HHhhhhcCCceEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCCcc
Q 019334 130 SQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYA 209 (342)
Q Consensus 130 ~e~~~~~~~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~~~Ldp 209 (342)
.... ..+..-|++|||.|..-. . -...|+..+. ++ ..++.+|.+|++++.|.|
T Consensus 99 ~~~~-~~~~~kv~iI~~a~~m~~-----------~-aaNaLLK~LE-------------EP-p~~~~fiL~t~~~~~ll~ 151 (328)
T PRK05707 99 VQTA-QLGGRKVVLIEPAEAMNR-----------N-AANALLKSLE-------------EP-SGDTVLLLISHQPSRLLP 151 (328)
T ss_pred hhcc-ccCCCeEEEECChhhCCH-----------H-HHHHHHHHHh-------------CC-CCCeEEEEEECChhhCcH
Confidence 4332 246677899999998631 1 1224554444 33 467888899999999998
Q ss_pred CCCCCCCCcceecC-CCHHHHHHHHHHH
Q 019334 210 PLIRDGRMEKFYWQ-PNLEDILNIVHRM 236 (342)
Q Consensus 210 aLlRpGRfD~~i~v-P~~~~R~~Il~~~ 236 (342)
.++= |.-.+.+. |+.++-.+.|...
T Consensus 152 TI~S--Rc~~~~~~~~~~~~~~~~L~~~ 177 (328)
T PRK05707 152 TIKS--RCQQQACPLPSNEESLQWLQQA 177 (328)
T ss_pred HHHh--hceeeeCCCcCHHHHHHHHHHh
Confidence 8775 66665553 7777777666543
No 185
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.51 E-value=7.7e-08 Score=86.40 Aligned_cols=71 Identities=18% Similarity=0.258 Sum_probs=45.8
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHH---hCCceEEeecccccccccCC-cHHHHHHHHHHHHHhhhhcCCceEEEeecc
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQA---MGIEPVIMSAGELESERAGE-PGKLIRERYRTASQVVQNQGKMSCLMINDI 147 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~---~g~~~i~vs~~eL~s~~~GE-sEr~iR~~F~~A~e~~~~~~~PcILfIDEI 147 (342)
+-+.+++|+||||+|||.+|-|++.+ .|.+..-++.++|+....-. ......+.+..- ..+.+|+|||+
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l-------~~~dlLilDDl 117 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRL-------KRVDLLILDDL 117 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHH-------HTSSCEEEETC
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCcc-------ccccEeccccc
Confidence 45689999999999999999999864 58889999999998743111 001111222221 13689999998
Q ss_pred cc
Q 019334 148 DA 149 (342)
Q Consensus 148 DA 149 (342)
-.
T Consensus 118 G~ 119 (178)
T PF01695_consen 118 GY 119 (178)
T ss_dssp TS
T ss_pred ce
Confidence 43
No 186
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.49 E-value=4.4e-06 Score=81.58 Aligned_cols=177 Identities=10% Similarity=0.118 Sum_probs=107.8
Q ss_pred HHHHHHHHHHHHHHHHhhc-CCCCCeEEEeecCCCCCHHHHHHHHHHHhCCce----------EEeecccccc--c---c
Q 019334 51 VFMASLLCHIVKNYIAHLL-NVKVPLILGIWGGKGQGKSFQTELIFQAMGIEP----------VIMSAGELES--E---R 114 (342)
Q Consensus 51 ~f~d~l~~hi~K~~l~~~~-~~k~PlglgL~GPPG~GKTllaravA~~~g~~~----------i~vs~~eL~s--~---~ 114 (342)
.|.|.+|..-++..+.... .-+.|..++++||+|+||+.+|+++|+.+-+.- ...+-+|+.- + .
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~ 81 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQH 81 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccc
Confidence 3667777777776666532 347899999999999999999999998875431 1222233330 0 0
Q ss_pred cCCc--------------------HHHHHHHHHHHHHhhhhcCCceEEEeecccccCCCCCCCcccchhHHHHHHHHhhc
Q 019334 115 AGEP--------------------GKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLS 174 (342)
Q Consensus 115 ~GEs--------------------Er~iR~~F~~A~e~~~~~~~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~ll 174 (342)
-|+. =..||++-+.+.. .+..+.-.|++||+.|..-. . -...||..+
T Consensus 82 ~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~-~p~~~~~kVvII~~ae~m~~-----------~-aaNaLLK~L 148 (314)
T PRK07399 82 QGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSR-PPLEAPRKVVVIEDAETMNE-----------A-AANALLKTL 148 (314)
T ss_pred cccccchhhhhhccccccccccCcHHHHHHHHHHHcc-CcccCCceEEEEEchhhcCH-----------H-HHHHHHHHH
Confidence 1211 1256776555432 22246778999999987631 1 122455554
Q ss_pred CCCCccccCccccccCCCCCccEEEeeCCCCCCccCCCCCCCCcceecC-CCHHHHHHHHHHHhhcCCCCHHHHHHHhhc
Q 019334 175 DNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQ-PNLEDILNIVHRMYEKDGITKDEVGSIVKT 253 (342)
Q Consensus 175 D~p~~v~l~g~~~~~~~~~~V~VIatTNr~~~LdpaLlRpGRfD~~i~v-P~~~~R~~Il~~~~~~~~~s~~di~~lvd~ 253 (342)
. ++ . +..+|.+|++++.|.|.++= |--.+-+. |+.++-.++|......+..+. +...++..
T Consensus 149 E-------------EP-p-~~~fILi~~~~~~Ll~TI~S--Rcq~i~f~~l~~~~~~~~L~~~~~~~~~~~-~~~~l~~~ 210 (314)
T PRK07399 149 E-------------EP-G-NGTLILIAPSPESLLPTIVS--RCQIIPFYRLSDEQLEQVLKRLGDEEILNI-NFPELLAL 210 (314)
T ss_pred h-------------CC-C-CCeEEEEECChHhCcHHHHh--hceEEecCCCCHHHHHHHHHHhhccccchh-HHHHHHHH
Confidence 4 33 2 34566777899999999765 66554443 788888888886654443332 23445444
Q ss_pred CCCCc
Q 019334 254 FPNQA 258 (342)
Q Consensus 254 f~~~~ 258 (342)
..|.+
T Consensus 211 a~Gs~ 215 (314)
T PRK07399 211 AQGSP 215 (314)
T ss_pred cCCCH
Confidence 44443
No 187
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.48 E-value=2.3e-06 Score=84.75 Aligned_cols=138 Identities=14% Similarity=0.154 Sum_probs=87.0
Q ss_pred hcCCCCCeEEEeecCCCCCHHHHHHHHHHHhCCceE-E--eec--------------cccc--ccc-----c--------
Q 019334 68 LLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPV-I--MSA--------------GELE--SER-----A-------- 115 (342)
Q Consensus 68 ~~~~k~PlglgL~GPPG~GKTllaravA~~~g~~~i-~--vs~--------------~eL~--s~~-----~-------- 115 (342)
..+ +.|..++++||+|+||+.+|+++|+.+.+.-- . -.. +++. .+- .
T Consensus 16 ~~~-rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~ 94 (342)
T PRK06964 16 LRA-RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAK 94 (342)
T ss_pred hcC-CcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccc
Confidence 444 89999999999999999999999998877321 0 000 1111 000 0
Q ss_pred -------CC---------cHHHHHHHHHHHHHhhhhcCCceEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCc
Q 019334 116 -------GE---------PGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTR 179 (342)
Q Consensus 116 -------GE---------sEr~iR~~F~~A~e~~~~~~~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~ 179 (342)
|. +=..||++-+.+... ...+.--|++||+.|..-. . -...||..+.
T Consensus 95 ~~~~~~~~~k~~~~~~~I~idqiR~l~~~~~~~-~~~~~~kV~iI~~ae~m~~-----------~-AaNaLLKtLE---- 157 (342)
T PRK06964 95 EADADEGGKKTKAPSKEIKIEQVRALLDFCGVG-THRGGARVVVLYPAEALNV-----------A-AANALLKTLE---- 157 (342)
T ss_pred cchhhcccccccccccccCHHHHHHHHHHhccC-CccCCceEEEEechhhcCH-----------H-HHHHHHHHhc----
Confidence 10 113566655444321 1234456888888887631 1 1234555544
Q ss_pred cccCccccccCCCCCccEEEeeCCCCCCccCCCCCCCCcceec-CCCHHHHHHHHHH
Q 019334 180 VSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYW-QPNLEDILNIVHR 235 (342)
Q Consensus 180 v~l~g~~~~~~~~~~V~VIatTNr~~~LdpaLlRpGRfD~~i~-vP~~~~R~~Il~~ 235 (342)
++ .+++.+|.+|++++.|.|.++. |.=.+.+ .|+.++..+.|..
T Consensus 158 ---------EP-p~~t~fiL~t~~~~~LLpTI~S--Rcq~i~~~~~~~~~~~~~L~~ 202 (342)
T PRK06964 158 ---------EP-PPGTVFLLVSARIDRLLPTILS--RCRQFPMTVPAPEAAAAWLAA 202 (342)
T ss_pred ---------CC-CcCcEEEEEECChhhCcHHHHh--cCEEEEecCCCHHHHHHHHHH
Confidence 22 5789999999999999999887 7744433 3788888888764
No 188
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=98.48 E-value=1.2e-07 Score=95.09 Aligned_cols=56 Identities=23% Similarity=0.283 Sum_probs=45.4
Q ss_pred CeEEEeecCCCCCHHHHHHHHHHHhC--CceEEeecccccccccCCcHHHHHHHHHHHH
Q 019334 74 PLILGIWGGKGQGKSFQTELIFQAMG--IEPVIMSAGELESERAGEPGKLIRERYRTAS 130 (342)
Q Consensus 74 PlglgL~GPPG~GKTllaravA~~~g--~~~i~vs~~eL~s~~~GEsEr~iR~~F~~A~ 130 (342)
-+++||.||||||||.+|-++|+++| +||+.++++|++|.-+-.+| .+-++||+|.
T Consensus 50 Gr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiyS~e~kKTE-~L~qa~RraI 107 (398)
T PF06068_consen 50 GRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIYSSEVKKTE-ALTQAFRRAI 107 (398)
T ss_dssp T-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-BTTC-HHH-HHHHHHHCSE
T ss_pred CcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceeeecccCchH-HHHHHHHHhh
Confidence 38999999999999999999999999 89999999999998877777 4567888764
No 189
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.46 E-value=5.9e-07 Score=80.22 Aligned_cols=122 Identities=16% Similarity=0.212 Sum_probs=73.1
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHh---CCceEEeeccccccc-----ccCCc-------HHHHHHHHHHHHHhhhhc
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQAM---GIEPVIMSAGELESE-----RAGEP-------GKLIRERYRTASQVVQNQ 136 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~~---g~~~i~vs~~eL~s~-----~~GEs-------Er~iR~~F~~A~e~~~~~ 136 (342)
..|.-|+|+|++||||+++|++|-+.. +.|||.|+.+.+-.. ..|.. .+.-+-.|..|.
T Consensus 20 ~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~LFG~~~~~~~~~~~~~~G~l~~A~------ 93 (168)
T PF00158_consen 20 SSDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESELFGHEKGAFTGARSDKKGLLEQAN------ 93 (168)
T ss_dssp TSTS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHHHEBCSSSSTTTSSEBEHHHHHTT------
T ss_pred CCCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhhhccccccccccccccCCceeecc------
Confidence 456889999999999999999999865 469999999876321 11110 001113444442
Q ss_pred CCceEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCCccCCCCCCC
Q 019334 137 GKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGR 216 (342)
Q Consensus 137 ~~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~~~LdpaLlRpGR 216 (342)
=-+|||||||..-+ .++..|+..++.-+...+++ ......+|-||+|||.. |. .++..|+
T Consensus 94 --~GtL~Ld~I~~L~~------------~~Q~~Ll~~l~~~~~~~~g~---~~~~~~~~RiI~st~~~--l~-~~v~~g~ 153 (168)
T PF00158_consen 94 --GGTLFLDEIEDLPP------------ELQAKLLRVLEEGKFTRLGS---DKPVPVDVRIIASTSKD--LE-ELVEQGR 153 (168)
T ss_dssp --TSEEEEETGGGS-H------------HHHHHHHHHHHHSEEECCTS---SSEEE--EEEEEEESS---HH-HHHHTTS
T ss_pred --ceEEeecchhhhHH------------HHHHHHHHHHhhchhccccc---cccccccceEEeecCcC--HH-HHHHcCC
Confidence 46899999999853 24556676666322111221 11113478899999862 33 4778888
Q ss_pred Ccc
Q 019334 217 MEK 219 (342)
Q Consensus 217 fD~ 219 (342)
|.+
T Consensus 154 fr~ 156 (168)
T PF00158_consen 154 FRE 156 (168)
T ss_dssp S-H
T ss_pred ChH
Confidence 876
No 190
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=5.2e-07 Score=97.43 Aligned_cols=118 Identities=19% Similarity=0.224 Sum_probs=76.0
Q ss_pred cCCCCCeEEE-eecCCCCCHHHHHHHHHHHhC---CceEEeeccccccc-----ccCCcHHHH----HHHHHHHHHhhhh
Q 019334 69 LNVKVPLILG-IWGGKGQGKSFQTELIFQAMG---IEPVIMSAGELESE-----RAGEPGKLI----RERYRTASQVVQN 135 (342)
Q Consensus 69 ~~~k~Plglg-L~GPPG~GKTllaravA~~~g---~~~i~vs~~eL~s~-----~~GEsEr~i----R~~F~~A~e~~~~ 135 (342)
...+.|.|.. +-||.|+|||-+|+++|..+. -++|+++.+|...+ .+|.|.--+ --..-+|. +
T Consensus 515 ~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVSrLIGaPPGYVGyeeGG~LTEaV---R- 590 (786)
T COG0542 515 GDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVSRLIGAPPGYVGYEEGGQLTEAV---R- 590 (786)
T ss_pred CCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHHHHHhCCCCCCceeccccchhHhh---h-
Confidence 3456677654 589999999999999999998 89999999987642 233332211 01222332 1
Q ss_pred cCCceEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCC
Q 019334 136 QGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFS 205 (342)
Q Consensus 136 ~~~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~~ 205 (342)
++-.|||++|||++.=| .|...||+.||+= .+. ++.-+..+ =++..||+|+|-=+
T Consensus 591 r~PySViLlDEIEKAHp------------dV~nilLQVlDdG-rLT-D~~Gr~Vd-FrNtiIImTSN~Gs 645 (786)
T COG0542 591 RKPYSVILLDEIEKAHP------------DVFNLLLQVLDDG-RLT-DGQGRTVD-FRNTIIIMTSNAGS 645 (786)
T ss_pred cCCCeEEEechhhhcCH------------HHHHHHHHHhcCC-eee-cCCCCEEe-cceeEEEEecccch
Confidence 23368999999999532 3788999999941 111 00001111 24789999998543
No 191
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=98.45 E-value=7.3e-07 Score=86.89 Aligned_cols=134 Identities=14% Similarity=0.218 Sum_probs=77.7
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHh---CCceEEeecccccc-----cccCCcH-------HHHHHHHHHHHHhhhhc
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQAM---GIEPVIMSAGELES-----ERAGEPG-------KLIRERYRTASQVVQNQ 136 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~~---g~~~i~vs~~eL~s-----~~~GEsE-------r~iR~~F~~A~e~~~~~ 136 (342)
+.+.-|+|.|++||||+++|+++-... +.+|+.++++.+-. .+.|... ..-...|..|
T Consensus 27 ~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~~~~lfg~~~~~~~g~~~~~~g~l~~a------- 99 (326)
T PRK11608 27 PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERA------- 99 (326)
T ss_pred CCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHHHHHHccccccccCCcccccCCchhcc-------
Confidence 345678999999999999999997655 46999999987631 1222110 0001122222
Q ss_pred CCceEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCCccCCCCCCC
Q 019334 137 GKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGR 216 (342)
Q Consensus 137 ~~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~~~LdpaLlRpGR 216 (342)
..-.|||||||..-. .++..|++.++.-....+++. .....++-||+|||..- +.|...|+
T Consensus 100 -~gGtL~l~~i~~L~~------------~~Q~~L~~~l~~~~~~~~g~~---~~~~~~~RiI~~s~~~l---~~l~~~g~ 160 (326)
T PRK11608 100 -DGGTLFLDELATAPM------------LVQEKLLRVIEYGELERVGGS---QPLQVNVRLVCATNADL---PAMVAEGK 160 (326)
T ss_pred -CCCeEEeCChhhCCH------------HHHHHHHHHHhcCcEEeCCCC---ceeeccEEEEEeCchhH---HHHHHcCC
Confidence 246899999999742 244556666653111111110 11123678899887631 13445555
Q ss_pred Ccc---------eecCCCHHHHHH
Q 019334 217 MEK---------FYWQPNLEDILN 231 (342)
Q Consensus 217 fD~---------~i~vP~~~~R~~ 231 (342)
|.. .+.+|...+|.+
T Consensus 161 f~~dL~~~l~~~~i~lPpLReR~e 184 (326)
T PRK11608 161 FRADLLDRLAFDVVQLPPLRERQS 184 (326)
T ss_pred chHHHHHhcCCCEEECCChhhhhh
Confidence 532 345787777744
No 192
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=98.45 E-value=2.4e-07 Score=92.21 Aligned_cols=103 Identities=17% Similarity=0.302 Sum_probs=62.8
Q ss_pred CCCCCeEEEeecCCCCCHHHHHHHHHHHhCCc-eEEee----cccccc---cccCCcHHHHHHHHHHHHHhhhhcCCceE
Q 019334 70 NVKVPLILGIWGGKGQGKSFQTELIFQAMGIE-PVIMS----AGELES---ERAGEPGKLIRERYRTASQVVQNQGKMSC 141 (342)
Q Consensus 70 ~~k~PlglgL~GPPG~GKTllaravA~~~g~~-~i~vs----~~eL~s---~~~GEsEr~iR~~F~~A~e~~~~~~~PcI 141 (342)
...+|+||.||||+|||||+|.-+....+-.. =.++- .-++.+ .+.|+..-. -.-|.+++ +.-.+
T Consensus 58 ~~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~~~~~l----~~va~~l~---~~~~l 130 (362)
T PF03969_consen 58 PPPPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRGQDDPL----PQVADELA---KESRL 130 (362)
T ss_pred cCCCCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhCCCccH----HHHHHHHH---hcCCE
Confidence 45689999999999999999999999887651 00010 011111 122222211 11233332 34569
Q ss_pred EEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCC
Q 019334 142 LMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDF 204 (342)
Q Consensus 142 LfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~ 204 (342)
|+|||+..- ++.+-++.+.|++.+= ..+|.+|+|.|++
T Consensus 131 LcfDEF~V~---------DiaDAmil~rLf~~l~----------------~~gvvlVaTSN~~ 168 (362)
T PF03969_consen 131 LCFDEFQVT---------DIADAMILKRLFEALF----------------KRGVVLVATSNRP 168 (362)
T ss_pred EEEeeeecc---------chhHHHHHHHHHHHHH----------------HCCCEEEecCCCC
Confidence 999999762 2234567766665322 3689999999984
No 193
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=98.45 E-value=4.7e-07 Score=88.61 Aligned_cols=135 Identities=14% Similarity=0.188 Sum_probs=79.6
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHh---CCceEEeecccccccccCCcHHHHHHHHH-------HHHH----hhhhcC
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQAM---GIEPVIMSAGELESERAGEPGKLIRERYR-------TASQ----VVQNQG 137 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~~---g~~~i~vs~~eL~s~~~GEsEr~iR~~F~-------~A~e----~~~~~~ 137 (342)
+...-|+|+|++||||+++|++|-... +.+|+.|+++.+-..+. -.++|- -|.. ... ..
T Consensus 20 ~~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l------~~~lfG~~~g~~~ga~~~~~G~~~-~a 92 (329)
T TIGR02974 20 PLDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLL------DSELFGHEAGAFTGAQKRHQGRFE-RA 92 (329)
T ss_pred CCCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHH------HHHHhccccccccCcccccCCchh-hC
Confidence 345678999999999999999997654 46999999986642211 111221 1100 000 11
Q ss_pred CceEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCCccCCCCCCCC
Q 019334 138 KMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRM 217 (342)
Q Consensus 138 ~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~~~LdpaLlRpGRf 217 (342)
..-.|||||||..-. .++..|+..+++-..-.+++. .....+|-||+|||.. ...+...|+|
T Consensus 93 ~gGtL~Ldei~~L~~------------~~Q~~Ll~~l~~~~~~~~g~~---~~~~~~~RiI~at~~~---l~~~~~~g~f 154 (329)
T TIGR02974 93 DGGTLFLDELATASL------------LVQEKLLRVIEYGEFERVGGS---QTLQVDVRLVCATNAD---LPALAAEGRF 154 (329)
T ss_pred CCCEEEeCChHhCCH------------HHHHHHHHHHHcCcEEecCCC---ceeccceEEEEechhh---HHHHhhcCch
Confidence 367899999999742 244566666653221112221 1113468899999763 1245667777
Q ss_pred cc---------eecCCCHHHHHH
Q 019334 218 EK---------FYWQPNLEDILN 231 (342)
Q Consensus 218 D~---------~i~vP~~~~R~~ 231 (342)
.. .|.+|...+|.+
T Consensus 155 r~dL~~rl~~~~i~lPpLReR~e 177 (329)
T TIGR02974 155 RADLLDRLAFDVITLPPLRERQE 177 (329)
T ss_pred HHHHHHHhcchhcCCCchhhhhh
Confidence 43 233587776654
No 194
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=98.45 E-value=3.5e-07 Score=94.11 Aligned_cols=156 Identities=14% Similarity=0.168 Sum_probs=89.1
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHh---CCceEEeecccccccccCCcHHHHHHHHH-------HHHH----hhhhcC
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQAM---GIEPVIMSAGELESERAGEPGKLIRERYR-------TASQ----VVQNQG 137 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~~---g~~~i~vs~~eL~s~~~GEsEr~iR~~F~-------~A~e----~~~~~~ 137 (342)
+...-|+|+|++|||||++|++|.... +-+|+.++++.+-..+ .-.++|- .|.. ... ..
T Consensus 217 ~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~~~------~~~~lfg~~~~~~~~~~~~~~g~~~-~a 289 (534)
T TIGR01817 217 RSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSETL------LESELFGHEKGAFTGAIAQRKGRFE-LA 289 (534)
T ss_pred CcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCHHH------HHHHHcCCCCCccCCCCcCCCCccc-cc
Confidence 345668999999999999999999874 5699999998773211 1111221 1100 000 12
Q ss_pred CceEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCCccCCCCCCCC
Q 019334 138 KMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRM 217 (342)
Q Consensus 138 ~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~~~LdpaLlRpGRf 217 (342)
..-+|||||||..-. .++..|+..+++-..-.+++. ......+-||+|||.. +. .+...|+|
T Consensus 290 ~~GtL~ldei~~L~~------------~~Q~~Ll~~l~~~~~~~~~~~---~~~~~~~riI~~s~~~--l~-~~~~~~~f 351 (534)
T TIGR01817 290 DGGTLFLDEIGEISP------------AFQAKLLRVLQEGEFERVGGN---RTLKVDVRLVAATNRD--LE-EAVAKGEF 351 (534)
T ss_pred CCCeEEEechhhCCH------------HHHHHHHHHHhcCcEEECCCC---ceEeecEEEEEeCCCC--HH-HHHHcCCC
Confidence 256899999999742 244566666653111111110 1112357899998764 22 35668888
Q ss_pred cc---------eecCCCHHHHHH-H---HHHHhh--------cCCCCHHHHHHHhh
Q 019334 218 EK---------FYWQPNLEDILN-I---VHRMYE--------KDGITKDEVGSIVK 252 (342)
Q Consensus 218 D~---------~i~vP~~~~R~~-I---l~~~~~--------~~~~s~~di~~lvd 252 (342)
.. .+.+|...+|.+ | ++.++. ...++.+-+..|..
T Consensus 352 ~~~L~~rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~ 407 (534)
T TIGR01817 352 RADLYYRINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPSAIRVLMS 407 (534)
T ss_pred CHHHHHHhcCCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHh
Confidence 65 234676666633 3 222221 12466666666654
No 195
>PF05729 NACHT: NACHT domain
Probab=98.43 E-value=2.8e-06 Score=71.30 Aligned_cols=141 Identities=21% Similarity=0.232 Sum_probs=72.8
Q ss_pred eEEEeecCCCCCHHHHHHHHHHHhCCc---------eEEeeccccccc------------ccCCcHHHHHHHHHHHHHhh
Q 019334 75 LILGIWGGKGQGKSFQTELIFQAMGIE---------PVIMSAGELESE------------RAGEPGKLIRERYRTASQVV 133 (342)
Q Consensus 75 lglgL~GPPG~GKTllaravA~~~g~~---------~i~vs~~eL~s~------------~~GEsEr~iR~~F~~A~e~~ 133 (342)
+.+.|+|+||+|||++++.++..+.-. ++.++..++-+. ...+....+.+.+....
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~--- 77 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELL--- 77 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHH---
Confidence 468899999999999999999666431 223333333321 11112222222111111
Q ss_pred hhcCCceEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCCccCCCC
Q 019334 134 QNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIR 213 (342)
Q Consensus 134 ~~~~~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~~~LdpaLlR 213 (342)
.+...++|+||-+|......+. + ..+.+...|.+++. .....++.+|.|++ +...+. +.+
T Consensus 78 -~~~~~~llilDglDE~~~~~~~-~---~~~~~~~~l~~l~~-------------~~~~~~~~liit~r-~~~~~~-~~~ 137 (166)
T PF05729_consen 78 -EKNKRVLLILDGLDELEEQDQS-Q---ERQRLLDLLSQLLP-------------QALPPGVKLIITSR-PRAFPD-LRR 137 (166)
T ss_pred -HcCCceEEEEechHhcccchhh-h---HHHHHHHHHHHHhh-------------hccCCCCeEEEEEc-CChHHH-HHH
Confidence 2567899999999998743221 1 11223333433333 11135677888774 444422 222
Q ss_pred CCCCcceecC-C-CHHHHHHHHHHHhh
Q 019334 214 DGRMEKFYWQ-P-NLEDILNIVHRMYE 238 (342)
Q Consensus 214 pGRfD~~i~v-P-~~~~R~~Il~~~~~ 238 (342)
.-.-...+.+ | +.+++...++.+++
T Consensus 138 ~~~~~~~~~l~~~~~~~~~~~~~~~f~ 164 (166)
T PF05729_consen 138 RLKQAQILELEPFSEEDIKQYLRKYFS 164 (166)
T ss_pred hcCCCcEEEECCCCHHHHHHHHHHHhh
Confidence 1111123444 4 66777777766654
No 196
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.43 E-value=2.7e-07 Score=92.38 Aligned_cols=58 Identities=24% Similarity=0.203 Sum_probs=52.0
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHhC--CceEEeecccccccccCCcHHHHHHHHHHHH
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQAMG--IEPVIMSAGELESERAGEPGKLIRERYRTAS 130 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~~g--~~~i~vs~~eL~s~~~GEsEr~iR~~F~~A~ 130 (342)
..-+++|+.||||+|||-+|-++|.++| +||+.+|++|++|--+..+|-+ -++||+|.
T Consensus 63 ~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~isgsEiYS~E~kKTE~L-~qa~RraI 122 (450)
T COG1224 63 MAGRGILIVGPPGTGKTALAMGIARELGEDVPFVAISGSEIYSLEVKKTEAL-TQALRRAI 122 (450)
T ss_pred ccccEEEEECCCCCcHHHHHHHHHHHhCCCCCceeeccceeeeecccHHHHH-HHHHHHhh
Confidence 3458999999999999999999999998 7999999999999988888865 56888885
No 197
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.41 E-value=5e-06 Score=81.20 Aligned_cols=136 Identities=13% Similarity=0.170 Sum_probs=82.1
Q ss_pred CCCCCeEEEeecCCCCCHHHHHHHHHHHhCCce-E------------Ee---ecccccc-cccCCc--HHHHHHHHHHHH
Q 019334 70 NVKVPLILGIWGGKGQGKSFQTELIFQAMGIEP-V------------IM---SAGELES-ERAGEP--GKLIRERYRTAS 130 (342)
Q Consensus 70 ~~k~PlglgL~GPPG~GKTllaravA~~~g~~~-i------------~v---s~~eL~s-~~~GEs--Er~iR~~F~~A~ 130 (342)
.-+.|..+++|||+|+|||.+|+++|+.+-+.- . .+ +-+++.- ...|.+ =..||+.-+.+.
T Consensus 24 ~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i~~~~~~i~id~ir~l~~~~~ 103 (329)
T PRK08058 24 KNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLVAPDGQSIKKDQIRYLKEEFS 103 (329)
T ss_pred cCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEeccccccCCHHHHHHHHHHHh
Confidence 347899999999999999999999998875421 0 00 0011110 001111 235666654443
Q ss_pred HhhhhcCCceEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCCccC
Q 019334 131 QVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAP 210 (342)
Q Consensus 131 e~~~~~~~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~~~Ldpa 210 (342)
.. +..+..-|++|||+|..-. . -...|+..+..| ..++.+|.+|+.++.|.|+
T Consensus 104 ~~-~~~~~~kvviI~~a~~~~~-----------~-a~NaLLK~LEEP--------------p~~~~~Il~t~~~~~ll~T 156 (329)
T PRK08058 104 KS-GVESNKKVYIIEHADKMTA-----------S-AANSLLKFLEEP--------------SGGTTAILLTENKHQILPT 156 (329)
T ss_pred hC-CcccCceEEEeehHhhhCH-----------H-HHHHHHHHhcCC--------------CCCceEEEEeCChHhCcHH
Confidence 21 1234567999999987631 1 223566655532 4567677788888999999
Q ss_pred CCCCCCCcceecC-CCHHHHHHHHH
Q 019334 211 LIRDGRMEKFYWQ-PNLEDILNIVH 234 (342)
Q Consensus 211 LlRpGRfD~~i~v-P~~~~R~~Il~ 234 (342)
++= |.-.+.+. |+.++-.++|+
T Consensus 157 IrS--Rc~~i~~~~~~~~~~~~~L~ 179 (329)
T PRK08058 157 ILS--RCQVVEFRPLPPESLIQRLQ 179 (329)
T ss_pred HHh--hceeeeCCCCCHHHHHHHHH
Confidence 766 55444443 67776655554
No 198
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=98.40 E-value=2e-06 Score=87.23 Aligned_cols=174 Identities=21% Similarity=0.262 Sum_probs=105.1
Q ss_pred HHHHHHHHHHHHHhhcCCCCCeEEEeecCCCCCHHHHHHHHHHHhCC-----ceEEeecccccccccCCcHHHHHH----
Q 019334 54 ASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGI-----EPVIMSAGELESERAGEPGKLIRE---- 124 (342)
Q Consensus 54 d~l~~hi~K~~l~~~~~~k~PlglgL~GPPG~GKTllaravA~~~g~-----~~i~vs~~eL~s~~~GEsEr~iR~---- 124 (342)
..++..++++|-. .+|. .=--+.||||.|+|||.|..|++++... .++.+++.+..+.++= .+|+
T Consensus 95 N~~A~aa~~~va~-~~g~-~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~----a~~~~~~~ 168 (408)
T COG0593 95 NRLAYAAAKAVAE-NPGG-AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVK----ALRDNEME 168 (408)
T ss_pred hHHHHHHHHHHHh-ccCC-cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHH----HHHhhhHH
Confidence 3477778888877 4442 2245889999999999999999987643 4556666655543221 1111
Q ss_pred HHHHHHHhhhhcCCceEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCC
Q 019334 125 RYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDF 204 (342)
Q Consensus 125 ~F~~A~e~~~~~~~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~ 204 (342)
-|++-- .-.+++||||+.+.++.. + ...++-++-.+.++ .. -||.|+.|+
T Consensus 169 ~Fk~~y-------~~dlllIDDiq~l~gk~~-~-----qeefFh~FN~l~~~----------------~k-qIvltsdr~ 218 (408)
T COG0593 169 KFKEKY-------SLDLLLIDDIQFLAGKER-T-----QEEFFHTFNALLEN----------------GK-QIVLTSDRP 218 (408)
T ss_pred HHHHhh-------ccCeeeechHhHhcCChh-H-----HHHHHHHHHHHHhc----------------CC-EEEEEcCCC
Confidence 222221 247999999999886522 1 13345455443331 11 456665443
Q ss_pred C----CCccCCCCCCCCcc--eec--CCCHHHHHHHHHHHhhcCC--CCHHHHHHHhhcCCCCccchHHHH
Q 019334 205 S----TIYAPLIRDGRMEK--FYW--QPNLEDILNIVHRMYEKDG--ITKDEVGSIVKTFPNQALDFYGAL 265 (342)
Q Consensus 205 ~----~LdpaLlRpGRfD~--~i~--vP~~~~R~~Il~~~~~~~~--~s~~di~~lvd~f~~~~~df~gAl 265 (342)
. .+.|-|+- ||+- .+. .|+.+.|..||+......+ ++.+-+.-++..+...=-+.+||+
T Consensus 219 P~~l~~~~~rL~S--R~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~~i~~ev~~~la~~~~~nvReLegaL 287 (408)
T COG0593 219 PKELNGLEDRLRS--RLEWGLVVEIEPPDDETRLAILRKKAEDRGIEIPDEVLEFLAKRLDRNVRELEGAL 287 (408)
T ss_pred chhhccccHHHHH--HHhceeEEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccHHHHHHHH
Confidence 2 24455555 8886 233 4999999999999777666 455555666655544323334554
No 199
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.38 E-value=2.6e-06 Score=90.40 Aligned_cols=133 Identities=16% Similarity=0.195 Sum_probs=81.0
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHh---CCceEEeecccccc-----cccC--------CcHHHHHHHHHHHHHhhhh
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQAM---GIEPVIMSAGELES-----ERAG--------EPGKLIRERYRTASQVVQN 135 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~~---g~~~i~vs~~eL~s-----~~~G--------EsEr~iR~~F~~A~e~~~~ 135 (342)
+...-|+|+|+||||||++|++|.... +-+|+.++++.+-. .+.| ...+. ...|..|
T Consensus 397 ~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~~~~~~lfg~~~~~~~g~~~~~-~g~le~a------ 469 (686)
T PRK15429 397 QSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQR-IGRFELA------ 469 (686)
T ss_pred CCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChhHhhhhhcCcccccccccccch-hhHHHhc------
Confidence 455679999999999999999998754 56999999876532 2222 11111 1233322
Q ss_pred cCCceEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCCccCCCCCC
Q 019334 136 QGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDG 215 (342)
Q Consensus 136 ~~~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~~~LdpaLlRpG 215 (342)
..-+|||||||..-. .+...|+..+++-..-.+++. .....+|-||+|||..- ..+...|
T Consensus 470 --~~GtL~Ldei~~L~~------------~~Q~~L~~~l~~~~~~~~g~~---~~~~~~~RiI~~t~~~l---~~~~~~~ 529 (686)
T PRK15429 470 --DKSSLFLDEVGDMPL------------ELQPKLLRVLQEQEFERLGSN---KIIQTDVRLIAATNRDL---KKMVADR 529 (686)
T ss_pred --CCCeEEEechhhCCH------------HHHHHHHHHHHhCCEEeCCCC---CcccceEEEEEeCCCCH---HHHHHcC
Confidence 257899999999742 244556666653111111111 11134688999997752 2456677
Q ss_pred CCcce---------ecCCCHHHHHH
Q 019334 216 RMEKF---------YWQPNLEDILN 231 (342)
Q Consensus 216 RfD~~---------i~vP~~~~R~~ 231 (342)
+|.+. |.+|...+|.+
T Consensus 530 ~f~~~L~~~l~~~~i~lPpLreR~~ 554 (686)
T PRK15429 530 EFRSDLYYRLNVFPIHLPPLRERPE 554 (686)
T ss_pred cccHHHHhccCeeEEeCCChhhhHh
Confidence 77762 33677777654
No 200
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.34 E-value=1.3e-06 Score=90.29 Aligned_cols=46 Identities=13% Similarity=0.038 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCeEEEeecCCCCCHHHHHHHHHHHh
Q 019334 51 VFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAM 98 (342)
Q Consensus 51 ~f~d~l~~hi~K~~l~~~~~~k~PlglgL~GPPG~GKTllaravA~~~ 98 (342)
.|.|+.+...+++.+... ......++|.||||||||+++++++..+
T Consensus 190 d~~dv~Gq~~~~~al~~a--a~~g~~vlliG~pGsGKTtlar~l~~ll 235 (499)
T TIGR00368 190 DLKDIKGQQHAKRALEIA--AAGGHNLLLFGPPGSGKTMLASRLQGIL 235 (499)
T ss_pred CHHHhcCcHHHHhhhhhh--ccCCCEEEEEecCCCCHHHHHHHHhccc
Confidence 799999888888887732 2344679999999999999999998643
No 201
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=98.31 E-value=6.1e-06 Score=85.89 Aligned_cols=171 Identities=18% Similarity=0.272 Sum_probs=108.3
Q ss_pred HHHHhhhhhhhhcccccccHHHHHHHHHHHHHHHHHhhcCCCCCeEEEeecCCCCCHHHHHHHHHHHhCCce--E-----
Q 019334 31 YRQKVTRSFEYLQGDYYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEP--V----- 103 (342)
Q Consensus 31 ~~~~~~r~f~~~~~~~y~~~~f~d~l~~hi~K~~l~~~~~~k~PlglgL~GPPG~GKTllaravA~~~g~~~--i----- 103 (342)
||-++.++|.+.+|..++. ..++|.+. .-+.+-+.++.||-|||||++||.+|+.+++.= .
T Consensus 7 ~rKyRP~~F~evvGQe~v~---------~~L~nal~---~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~ 74 (515)
T COG2812 7 ARKYRPKTFDDVVGQEHVV---------KTLSNALE---NGRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCG 74 (515)
T ss_pred HHHhCcccHHHhcccHHHH---------HHHHHHHH---hCcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcch
Confidence 6777777777777655543 23333332 347778999999999999999999999998852 1
Q ss_pred ------Eeecccccc-----cccCCcHHHHHHHHHHHHHhhhhcCCceEEEeecccccCCCCCCCcccchhHHHHHHHHh
Q 019334 104 ------IMSAGELES-----ERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMN 172 (342)
Q Consensus 104 ------~vs~~eL~s-----~~~GEsEr~iR~~F~~A~e~~~~~~~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~ 172 (342)
.+..|...+ .-.-.+=..||++-+++ ..+...++.-|.+|||++-... +..++ ||-
T Consensus 75 ~C~~Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v-~y~P~~~ryKVyiIDEvHMLS~-----------~afNA-LLK 141 (515)
T COG2812 75 KCISCKEINEGSLIDVIEIDAASNTGVDDIREIIEKV-NYAPSEGRYKVYIIDEVHMLSK-----------QAFNA-LLK 141 (515)
T ss_pred hhhhhHhhhcCCcccchhhhhhhccChHHHHHHHHHh-ccCCccccceEEEEecHHhhhH-----------HHHHH-Hhc
Confidence 122222221 11223445688877666 4556689999999999998741 22343 443
Q ss_pred hcCCCCccccCccccccCCCCCccEEEeeCCCCCCccC-CCCCCCCcceecCCCHHHHHHHHHHHhhcCCC
Q 019334 173 LSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAP-LIRDGRMEKFYWQPNLEDILNIVHRMYEKDGI 242 (342)
Q Consensus 173 llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~~~Ldpa-LlRpGRfD~~i~vP~~~~R~~Il~~~~~~~~~ 242 (342)
-+. ++ -.+|..|.||..+..||+- |=|-=|||-.- + +.++-..-|..++..+++
T Consensus 142 TLE-------------EP-P~hV~FIlATTe~~Kip~TIlSRcq~f~fkr-i-~~~~I~~~L~~i~~~E~I 196 (515)
T COG2812 142 TLE-------------EP-PSHVKFILATTEPQKIPNTILSRCQRFDFKR-L-DLEEIAKHLAAILDKEGI 196 (515)
T ss_pred ccc-------------cC-ccCeEEEEecCCcCcCchhhhhccccccccC-C-CHHHHHHHHHHHHHhcCC
Confidence 222 33 5788888888899999998 55666665211 1 233444445555554443
No 202
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.29 E-value=1.8e-06 Score=88.77 Aligned_cols=134 Identities=18% Similarity=0.185 Sum_probs=82.0
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHh---CCceEEeeccccccc-----ccCCcH-------HHHHHHHHHHHHhhhhc
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQAM---GIEPVIMSAGELESE-----RAGEPG-------KLIRERYRTASQVVQNQ 136 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~~---g~~~i~vs~~eL~s~-----~~GEsE-------r~iR~~F~~A~e~~~~~ 136 (342)
+.+.-|+|+|++||||+++|+++.... +.+|+.++++.+-+. ..|... +.-...|..|
T Consensus 208 ~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~~e~~lfG~~~g~~~ga~~~~~g~~~~a------- 280 (509)
T PRK05022 208 ASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLAESELFGHVKGAFTGAISNRSGKFELA------- 280 (509)
T ss_pred CCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHHHHHHhcCccccccCCCcccCCcchhhc-------
Confidence 456779999999999999999998774 469999999876421 112100 0000123222
Q ss_pred CCceEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCCccCCCCCCC
Q 019334 137 GKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGR 216 (342)
Q Consensus 137 ~~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~~~LdpaLlRpGR 216 (342)
..-.|||||||..-. .++..|+..+++-....+++. ......|-||+|||+.- ..+...|+
T Consensus 281 -~gGtL~ldeI~~L~~------------~~Q~~Ll~~l~~~~~~~~g~~---~~~~~~~RiI~~t~~~l---~~~~~~~~ 341 (509)
T PRK05022 281 -DGGTLFLDEIGELPL------------ALQAKLLRVLQYGEIQRVGSD---RSLRVDVRVIAATNRDL---REEVRAGR 341 (509)
T ss_pred -CCCEEEecChhhCCH------------HHHHHHHHHHhcCCEeeCCCC---cceecceEEEEecCCCH---HHHHHcCC
Confidence 256799999999752 234456666653211112221 11134688999998752 25677888
Q ss_pred Ccce---------ecCCCHHHHHH
Q 019334 217 MEKF---------YWQPNLEDILN 231 (342)
Q Consensus 217 fD~~---------i~vP~~~~R~~ 231 (342)
|... |.+|...+|.+
T Consensus 342 f~~dL~~rl~~~~i~lPpLreR~e 365 (509)
T PRK05022 342 FRADLYHRLSVFPLSVPPLRERGD 365 (509)
T ss_pred ccHHHHhcccccEeeCCCchhchh
Confidence 8763 33577776644
No 203
>PRK15115 response regulator GlrR; Provisional
Probab=98.29 E-value=1.1e-06 Score=87.16 Aligned_cols=133 Identities=17% Similarity=0.213 Sum_probs=80.5
Q ss_pred CeEEEeecCCCCCHHHHHHHHHHHh---CCceEEeecccccccccCCcHHHHHHHHHHHHH-----------hhhhcCCc
Q 019334 74 PLILGIWGGKGQGKSFQTELIFQAM---GIEPVIMSAGELESERAGEPGKLIRERYRTASQ-----------VVQNQGKM 139 (342)
Q Consensus 74 PlglgL~GPPG~GKTllaravA~~~---g~~~i~vs~~eL~s~~~GEsEr~iR~~F~~A~e-----------~~~~~~~P 139 (342)
...++|+|++|+|||++|+++.... +.+|+.++++.+-..+ .-.++|-.+.. .. .+...
T Consensus 157 ~~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~------~~~~lfg~~~~~~~~~~~~~~g~~-~~a~~ 229 (444)
T PRK15115 157 DVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQL------LESELFGHARGAFTGAVSNREGLF-QAAEG 229 (444)
T ss_pred CCeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHH------HHHHhcCCCcCCCCCCccCCCCcE-EECCC
Confidence 3568899999999999999998774 4799999998763221 11122211100 00 01234
Q ss_pred eEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCCccCCCCCCCCcc
Q 019334 140 SCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEK 219 (342)
Q Consensus 140 cILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~~~LdpaLlRpGRfD~ 219 (342)
-.|||||||..-. .++..|+..+++-..-.++++. ....+|-||+|||+. ++ .++..|+|.+
T Consensus 230 gtl~l~~i~~l~~------------~~q~~L~~~l~~~~~~~~g~~~---~~~~~~rii~~~~~~--l~-~~~~~~~f~~ 291 (444)
T PRK15115 230 GTLFLDEIGDMPA------------PLQVKLLRVLQERKVRPLGSNR---DIDIDVRIISATHRD--LP-KAMARGEFRE 291 (444)
T ss_pred CEEEEEccccCCH------------HHHHHHHHHHhhCCEEeCCCCc---eeeeeEEEEEeCCCC--HH-HHHHcCCccH
Confidence 6899999999752 2344566655532111222211 113478899999863 33 5677789965
Q ss_pred e---------ecCCCHHHHHH
Q 019334 220 F---------YWQPNLEDILN 231 (342)
Q Consensus 220 ~---------i~vP~~~~R~~ 231 (342)
. +.+|...+|.+
T Consensus 292 ~l~~~l~~~~i~lPpLr~R~e 312 (444)
T PRK15115 292 DLYYRLNVVSLKIPALAERTE 312 (444)
T ss_pred HHHHhhceeeecCCChHhccc
Confidence 2 23587877753
No 204
>PRK00131 aroK shikimate kinase; Reviewed
Probab=98.29 E-value=2.2e-06 Score=73.27 Aligned_cols=44 Identities=25% Similarity=0.306 Sum_probs=36.0
Q ss_pred CCeEEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccccccCCc
Q 019334 73 VPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEP 118 (342)
Q Consensus 73 ~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~~~GEs 118 (342)
.|..++|.||||||||++++++|+.+|++++ +..+++....|.+
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~~~~~--d~d~~~~~~~g~~ 46 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLGYDFI--DTDHLIEARAGKS 46 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhCCCEE--EChHHHHHHcCCC
Confidence 5678999999999999999999999998877 4556665555544
No 205
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.27 E-value=1.3e-06 Score=77.05 Aligned_cols=155 Identities=14% Similarity=0.245 Sum_probs=80.2
Q ss_pred CCeEEEeecCCCCCHHHHHHHHHHHhC-----CceEEe-eccc------c-------------cc-------------cc
Q 019334 73 VPLILGIWGGKGQGKSFQTELIFQAMG-----IEPVIM-SAGE------L-------------ES-------------ER 114 (342)
Q Consensus 73 ~PlglgL~GPPG~GKTllaravA~~~g-----~~~i~v-s~~e------L-------------~s-------------~~ 114 (342)
....++|+||.|+|||++++.+..... ..++.. .... + .. ..
T Consensus 19 ~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 98 (234)
T PF01637_consen 19 PSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFIEETSLADELSEALGISIPSITLEKISKDL 98 (234)
T ss_dssp -SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHHHHHHHHCHCHHHHHHHCCTSTTEEEECTS
T ss_pred cCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHHHHHHHHHHHHHHHhhhcccccchhhhhcc
Confidence 457899999999999999999999882 111111 1100 0 00 01
Q ss_pred cCCcHHHHHHHHHHHHHhhhhcCCceEEEeecccccC-CCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCC
Q 019334 115 AGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGL-GRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITN 193 (342)
Q Consensus 115 ~GEsEr~iR~~F~~A~e~~~~~~~PcILfIDEIDAg~-~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~ 193 (342)
...+...+.+.++...+ .+..+||+|||+|... +-. ....+...|.++++. +.. ..
T Consensus 99 ~~~~~~~l~~~~~~l~~----~~~~~iiviDe~~~~~~~~~-------~~~~~~~~l~~~~~~---------~~~---~~ 155 (234)
T PF01637_consen 99 SEDSFSALERLLEKLKK----KGKKVIIVIDEFQYLAIASE-------EDKDFLKSLRSLLDS---------LLS---QQ 155 (234)
T ss_dssp -GG-G--HHHHHHHHHH----CHCCEEEEEETGGGGGBCTT-------TTHHHHHHHHHHHHH----------------T
T ss_pred hhhHHHHHHHHHHHHHh----cCCcEEEEEecHHHHhhccc-------chHHHHHHHHHHHhh---------ccc---cC
Confidence 12335555555554433 3445999999999987 211 113355667766652 111 34
Q ss_pred CccEEEeeCCCCCC------ccCCCCCCCCcceecC-C-CHHHHHHHHHHHhhcC-C--CCHHHHHHHhhc
Q 019334 194 RIPIIFTGNDFSTI------YAPLIRDGRMEKFYWQ-P-NLEDILNIVHRMYEKD-G--ITKDEVGSIVKT 253 (342)
Q Consensus 194 ~V~VIatTNr~~~L------dpaLlRpGRfD~~i~v-P-~~~~R~~Il~~~~~~~-~--~s~~di~~lvd~ 253 (342)
++.+|.++...+.. .+++ -||+.. +.+ | +.++-.+++...++.. . .+.++++++..-
T Consensus 156 ~~~~v~~~S~~~~~~~~~~~~~~~--~~~~~~-~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 223 (234)
T PF01637_consen 156 NVSIVITGSSDSLMEEFLDDKSPL--FGRFSH-IELKPLSKEEAREFLKELFKELIKLPFSDEDIEEIYSL 223 (234)
T ss_dssp TEEEEEEESSHHHHHHTT-TTSTT--TT---E-EEE----HHHHHHHHHHHHHCC------HHHHHHHHHH
T ss_pred CceEEEECCchHHHHHhhcccCcc--ccccce-EEEeeCCHHHHHHHHHHHHHHhhcccCCHHHHHHHHHH
Confidence 56566655442211 1122 246666 544 4 6777778887766554 2 367777666543
No 206
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=98.23 E-value=2.4e-06 Score=71.24 Aligned_cols=39 Identities=28% Similarity=0.496 Sum_probs=33.1
Q ss_pred EEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccccccC
Q 019334 76 ILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAG 116 (342)
Q Consensus 76 glgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~~~G 116 (342)
.+++.||||||||++|+.+++..+ ...++..++.....+
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~--~~~i~~D~~~~~~~~ 39 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG--AVVISQDEIRRRLAG 39 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST--EEEEEHHHHHHHHCC
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC--CEEEeHHHHHHHHcc
Confidence 378899999999999999999999 666777777766655
No 207
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.23 E-value=5.1e-06 Score=78.83 Aligned_cols=69 Identities=23% Similarity=0.355 Sum_probs=50.3
Q ss_pred CCeEEEeecCCCCCHHHHHHHHHHHh---CCceEEeecccccccccCCcHHHHHHHHHH---HHHhhhhcCCceEEEeec
Q 019334 73 VPLILGIWGGKGQGKSFQTELIFQAM---GIEPVIMSAGELESERAGEPGKLIRERYRT---ASQVVQNQGKMSCLMIND 146 (342)
Q Consensus 73 ~PlglgL~GPPG~GKTllaravA~~~---g~~~i~vs~~eL~s~~~GEsEr~iR~~F~~---A~e~~~~~~~PcILfIDE 146 (342)
-+.++.|+||||+|||.+|-|++.++ |..++-++.+|+++. |.+.|.. ..+..+.-.+..+|+|||
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~--------Lk~~~~~~~~~~~l~~~l~~~dlLIiDD 175 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSK--------LKAAFDEGRLEEKLLRELKKVDLLIIDD 175 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHH--------HHHHHhcCchHHHHHHHhhcCCEEEEec
Confidence 67899999999999999999998765 889999999999974 2333321 000111013478999999
Q ss_pred ccc
Q 019334 147 IDA 149 (342)
Q Consensus 147 IDA 149 (342)
|=+
T Consensus 176 lG~ 178 (254)
T COG1484 176 IGY 178 (254)
T ss_pred ccC
Confidence 855
No 208
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=98.22 E-value=2.5e-06 Score=89.13 Aligned_cols=134 Identities=16% Similarity=0.204 Sum_probs=82.0
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHH-----------hCCceEEeecccccc-----cccCCcHH--------HHHHHHH
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQA-----------MGIEPVIMSAGELES-----ERAGEPGK--------LIRERYR 127 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~-----------~g~~~i~vs~~eL~s-----~~~GEsEr--------~iR~~F~ 127 (342)
+.+.-|+|+|++||||+++|+++-.. .+-||+.++++.+-. ...|..+. .-.-.|+
T Consensus 240 ~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~inCaal~e~lleseLFG~~~gaftga~~~~~~Gl~e 319 (538)
T PRK15424 240 RSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFE 319 (538)
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEeecccCChhhHHHHhcCCccccccCccccccCCchh
Confidence 45678999999999999999999776 567999999987632 12221110 0001232
Q ss_pred HHHHhhhhcCCceEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCC
Q 019334 128 TASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTI 207 (342)
Q Consensus 128 ~A~e~~~~~~~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~~~L 207 (342)
.| .--.|||||||..-. .++..|+..+.+-....+++. ......|-||+|||+. |
T Consensus 320 ~A--------~gGTLfLdeI~~Lp~------------~~Q~kLl~~L~e~~~~r~G~~---~~~~~dvRiIaat~~~--L 374 (538)
T PRK15424 320 IA--------HGGTLFLDEIGEMPL------------PLQTRLLRVLEEKEVTRVGGH---QPVPVDVRVISATHCD--L 374 (538)
T ss_pred cc--------CCCEEEEcChHhCCH------------HHHHHHHhhhhcCeEEecCCC---ceeccceEEEEecCCC--H
Confidence 22 135799999999742 244566666653222222221 1112457899999874 2
Q ss_pred ccCCCCCCCCcce-e--------cCCCHHHHHH
Q 019334 208 YAPLIRDGRMEKF-Y--------WQPNLEDILN 231 (342)
Q Consensus 208 dpaLlRpGRfD~~-i--------~vP~~~~R~~ 231 (342)
. .+...|+|.+- | .+|...+|.+
T Consensus 375 ~-~~v~~g~Fr~dL~yrL~~~~I~lPPLReR~e 406 (538)
T PRK15424 375 E-EDVRQGRFRRDLFYRLSILRLQLPPLRERVA 406 (538)
T ss_pred H-HHHhcccchHHHHHHhcCCeecCCChhhchh
Confidence 2 56788888862 2 2477666653
No 209
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.22 E-value=4.6e-06 Score=83.41 Aligned_cols=56 Identities=18% Similarity=0.135 Sum_probs=46.2
Q ss_pred CeEEEeecCCCCCHHHHHHHHHHHhCC-------ceEEeec----ccccccccCCcHHHHHHHHHHH
Q 019334 74 PLILGIWGGKGQGKSFQTELIFQAMGI-------EPVIMSA----GELESERAGEPGKLIRERYRTA 129 (342)
Q Consensus 74 PlglgL~GPPG~GKTllaravA~~~g~-------~~i~vs~----~eL~s~~~GEsEr~iR~~F~~A 129 (342)
.++++|+||||||||++|+++|+.++. ++..+++ +.+...-.|=-.+.+|+.|.+.
T Consensus 78 r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~~~~~sp~~e~Pl~l~p~~~r~~~~~~ 144 (361)
T smart00763 78 KQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKWNGEESPMHEDPLHLFPDELREDLEDE 144 (361)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEecCCCCCCccCCcccCCHHHHHHHHHH
Confidence 479999999999999999999999998 8999999 5555555555577777777554
No 210
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.22 E-value=6.5e-06 Score=85.17 Aligned_cols=132 Identities=15% Similarity=0.205 Sum_probs=76.4
Q ss_pred eEEEeecCCCCCHHHHHHHHHHHh---CCceEEeecccccccc-----cCCcH-------HHHHHHHHHHHHhhhhcCCc
Q 019334 75 LILGIWGGKGQGKSFQTELIFQAM---GIEPVIMSAGELESER-----AGEPG-------KLIRERYRTASQVVQNQGKM 139 (342)
Q Consensus 75 lglgL~GPPG~GKTllaravA~~~---g~~~i~vs~~eL~s~~-----~GEsE-------r~iR~~F~~A~e~~~~~~~P 139 (342)
.-|+|+|++||||+++|+++-... +.+|+.++++.+-..+ .|... +.-...|+.| ..
T Consensus 228 ~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~~~~e~elFG~~~~~~~~~~~~~~g~~e~a--------~~ 299 (520)
T PRK10820 228 APLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPDDVVESELFGHAPGAYPNALEGKKGFFEQA--------NG 299 (520)
T ss_pred CCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCCHHHHHHHhcCCCCCCcCCcccCCCChhhhc--------CC
Confidence 348999999999999999986543 3589999998764311 12110 0001123322 25
Q ss_pred eEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCCccCCCCCCCCcc
Q 019334 140 SCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEK 219 (342)
Q Consensus 140 cILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~~~LdpaLlRpGRfD~ 219 (342)
-.|||||||..-+ .++..|++.+.+-+.-.+++. .....+|-||+||+..- ..|...|+|..
T Consensus 300 GtL~LdeI~~L~~------------~~Q~~Ll~~l~~~~~~~~g~~---~~~~~~vRiI~st~~~l---~~l~~~g~f~~ 361 (520)
T PRK10820 300 GSVLLDEIGEMSP------------RMQAKLLRFLNDGTFRRVGED---HEVHVDVRVICATQKNL---VELVQKGEFRE 361 (520)
T ss_pred CEEEEeChhhCCH------------HHHHHHHHHHhcCCcccCCCC---cceeeeeEEEEecCCCH---HHHHHcCCccH
Confidence 6799999999742 134456655553111111110 11124678999987652 25667777765
Q ss_pred e---------ecCCCHHHHH-HH
Q 019334 220 F---------YWQPNLEDIL-NI 232 (342)
Q Consensus 220 ~---------i~vP~~~~R~-~I 232 (342)
. +.+|...+|. +|
T Consensus 362 dL~~rL~~~~i~lPpLreR~~Di 384 (520)
T PRK10820 362 DLYYRLNVLTLNLPPLRDRPQDI 384 (520)
T ss_pred HHHhhcCeeEEeCCCcccChhHH
Confidence 1 2357776665 44
No 211
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=98.21 E-value=1.4e-06 Score=71.06 Aligned_cols=32 Identities=25% Similarity=0.376 Sum_probs=27.7
Q ss_pred EEEeecCCCCCHHHHHHHHHHHhCCceEEeec
Q 019334 76 ILGIWGGKGQGKSFQTELIFQAMGIEPVIMSA 107 (342)
Q Consensus 76 glgL~GPPG~GKTllaravA~~~g~~~i~vs~ 107 (342)
.++|.||||||||++|+.+|+++|++.+.++.
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~~~~i~~d~ 32 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLGFPVISMDD 32 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTCEEEEEHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCeEEEecc
Confidence 47899999999999999999999977665544
No 212
>PHA00729 NTP-binding motif containing protein
Probab=98.19 E-value=4.7e-06 Score=78.57 Aligned_cols=44 Identities=16% Similarity=0.110 Sum_probs=34.4
Q ss_pred HHHHHHHHHhhcCCCCCeEEEeecCCCCCHHHHHHHHHHHhCCce
Q 019334 58 CHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEP 102 (342)
Q Consensus 58 ~hi~K~~l~~~~~~k~PlglgL~GPPG~GKTllaravA~~~g~~~ 102 (342)
.|++|+++.+.... ....++|+||||+|||++|.++|.+++..+
T Consensus 2 ~~~~k~~~~~l~~~-~f~nIlItG~pGvGKT~LA~aLa~~l~~~l 45 (226)
T PHA00729 2 LWLAKKIVSAYNNN-GFVSAVIFGKQGSGKTTYALKVARDVFWKL 45 (226)
T ss_pred chHHHHHHHHHhcC-CeEEEEEECCCCCCHHHHHHHHHHHHHhhc
Confidence 56777777754433 346899999999999999999999987433
No 213
>PF13173 AAA_14: AAA domain
Probab=98.19 E-value=2.8e-06 Score=71.34 Aligned_cols=69 Identities=14% Similarity=0.233 Sum_probs=46.3
Q ss_pred eEEEeecCCCCCHHHHHHHHHHHhC--CceEEeecccccccccCCcHHHHHHHHHHHHHhhhhcCCceEEEeeccccc
Q 019334 75 LILGIWGGKGQGKSFQTELIFQAMG--IEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAG 150 (342)
Q Consensus 75 lglgL~GPPG~GKTllaravA~~~g--~~~i~vs~~eL~s~~~GEsEr~iR~~F~~A~e~~~~~~~PcILfIDEIDAg 150 (342)
+.++|+||.|||||++++.+++++. -+++.++..+......-+.+ +-+.|.+- . ...+++||||||...
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~--~~~~~~~~---~--~~~~~~i~iDEiq~~ 73 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPD--LLEYFLEL---I--KPGKKYIFIDEIQYL 73 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhh--hHHHHHHh---h--ccCCcEEEEehhhhh
Confidence 5789999999999999999999987 66667766654431111111 22222221 1 235799999999886
No 214
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.17 E-value=4.2e-06 Score=72.02 Aligned_cols=42 Identities=14% Similarity=0.205 Sum_probs=25.7
Q ss_pred cCCCCCeEEEeecCCCCCHHHHHHHHHHHhCCc---eEEeecccc
Q 019334 69 LNVKVPLILGIWGGKGQGKSFQTELIFQAMGIE---PVIMSAGEL 110 (342)
Q Consensus 69 ~~~k~PlglgL~GPPG~GKTllaravA~~~g~~---~i~vs~~eL 110 (342)
.....|..++|+||||||||+++++++..+... ++.++...-
T Consensus 19 ~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 19 AQSGSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp TSS-----EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred HHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 344677999999999999999999888666554 565554433
No 215
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.17 E-value=2.7e-06 Score=84.49 Aligned_cols=131 Identities=17% Similarity=0.192 Sum_probs=78.7
Q ss_pred CeEEEeecCCCCCHHHHHHHHHHH---hCCceEEeecccccccc-----cCC--------cHHHHHHHHHHHHHhhhhcC
Q 019334 74 PLILGIWGGKGQGKSFQTELIFQA---MGIEPVIMSAGELESER-----AGE--------PGKLIRERYRTASQVVQNQG 137 (342)
Q Consensus 74 PlglgL~GPPG~GKTllaravA~~---~g~~~i~vs~~eL~s~~-----~GE--------sEr~iR~~F~~A~e~~~~~~ 137 (342)
..-++++|++||||+++|+++... .+.+|+.+++..+-..+ .|. .... ...|.. .
T Consensus 166 ~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~-~g~~~~--------a 236 (457)
T PRK11361 166 QASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLESELFGHEKGAFTGAQTLR-QGLFER--------A 236 (457)
T ss_pred CcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHHHHHhcCCCCCCCCCCCCCC-CCceEE--------C
Confidence 356889999999999999999765 44699999998764221 111 0000 001111 1
Q ss_pred CceEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCCccCCCCCCCC
Q 019334 138 KMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRM 217 (342)
Q Consensus 138 ~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~~~LdpaLlRpGRf 217 (342)
..-+|||||||.... .++..|+..+++-....+++. .....++-||+|||+.- ..|.+.|+|
T Consensus 237 ~~gtl~ld~i~~l~~------------~~q~~L~~~l~~~~~~~~~~~---~~~~~~~rii~~t~~~l---~~~~~~g~~ 298 (457)
T PRK11361 237 NEGTLLLDEIGEMPL------------VLQAKLLRILQEREFERIGGH---QTIKVDIRIIAATNRDL---QAMVKEGTF 298 (457)
T ss_pred CCCEEEEechhhCCH------------HHHHHHHHHHhcCcEEeCCCC---ceeeeceEEEEeCCCCH---HHHHHcCCc
Confidence 245899999999752 134566666664211112221 11134688999998632 267888998
Q ss_pred ccee---------cCCCHHHHHH
Q 019334 218 EKFY---------WQPNLEDILN 231 (342)
Q Consensus 218 D~~i---------~vP~~~~R~~ 231 (342)
...+ .+|...+|.+
T Consensus 299 ~~~l~~~l~~~~i~~ppLreR~~ 321 (457)
T PRK11361 299 REDLFYRLNVIHLILPPLRDRRE 321 (457)
T ss_pred hHHHHHHhccceecCCChhhchh
Confidence 7733 2476666643
No 216
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.17 E-value=1.1e-05 Score=90.42 Aligned_cols=133 Identities=20% Similarity=0.334 Sum_probs=74.1
Q ss_pred CCCCeEEEeecCCCCCHHHHHHHHHHHhCCce---EEeecc------cccccc-cCC-------cHHHHHHHH-------
Q 019334 71 VKVPLILGIWGGKGQGKSFQTELIFQAMGIEP---VIMSAG------ELESER-AGE-------PGKLIRERY------- 126 (342)
Q Consensus 71 ~k~PlglgL~GPPG~GKTllaravA~~~g~~~---i~vs~~------eL~s~~-~GE-------sEr~iR~~F------- 126 (342)
.+.++.++||||+|+|||++|+++++.+.-.| +.+... +.+... ..+ .++.+.++.
T Consensus 204 ~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~ 283 (1153)
T PLN03210 204 SEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKI 283 (1153)
T ss_pred cCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeeccccccchhhcccccccccchhHHHHHHHHHHHhCCCCccc
Confidence 44568999999999999999999998876543 111110 000000 000 011111111
Q ss_pred ---HHHHHhhhhcCCceEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCC
Q 019334 127 ---RTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGND 203 (342)
Q Consensus 127 ---~~A~e~~~~~~~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr 203 (342)
...++.. ++++.+|++||+|.. .+...|....+ |. ..+.-||+||.+
T Consensus 284 ~~~~~~~~~L--~~krvLLVLDdv~~~--------------~~l~~L~~~~~----------~~----~~GsrIIiTTrd 333 (1153)
T PLN03210 284 YHLGAMEERL--KHRKVLIFIDDLDDQ--------------DVLDALAGQTQ----------WF----GSGSRIIVITKD 333 (1153)
T ss_pred CCHHHHHHHH--hCCeEEEEEeCCCCH--------------HHHHHHHhhCc----------cC----CCCcEEEEEeCc
Confidence 1122222 478999999998642 12223332211 32 234568888886
Q ss_pred CCCCccCCCCCCCCcceecC--CCHHHHHHHHHHHhh
Q 019334 204 FSTIYAPLIRDGRMEKFYWQ--PNLEDILNIVHRMYE 238 (342)
Q Consensus 204 ~~~LdpaLlRpGRfD~~i~v--P~~~~R~~Il~~~~~ 238 (342)
...+ +....|+.|.+ |+.++-.++|..+.-
T Consensus 334 ~~vl-----~~~~~~~~~~v~~l~~~ea~~LF~~~Af 365 (1153)
T PLN03210 334 KHFL-----RAHGIDHIYEVCLPSNELALEMFCRSAF 365 (1153)
T ss_pred HHHH-----HhcCCCeEEEecCCCHHHHHHHHHHHhc
Confidence 5433 33456776665 788888889876543
No 217
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.16 E-value=8.1e-07 Score=85.00 Aligned_cols=155 Identities=14% Similarity=0.164 Sum_probs=82.0
Q ss_pred HHHHHHHHHHhhcCCCCCeEEEeecCCCCCHHHHHHHHHHHhCCce-E--EeecccccccccCCcHHHHHHHHHHHHHh-
Q 019334 57 LCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEP-V--IMSAGELESERAGEPGKLIRERYRTASQV- 132 (342)
Q Consensus 57 ~~hi~K~~l~~~~~~k~PlglgL~GPPG~GKTllaravA~~~g~~~-i--~vs~~eL~s~~~GEsEr~iR~~F~~A~e~- 132 (342)
..++++.++. -+ .-++|.||+|||||++++..-.++.-.- + .+..+- -.+...+.+..+...+.
T Consensus 22 ~~~ll~~l~~----~~--~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~------~Tts~~~q~~ie~~l~k~ 89 (272)
T PF12775_consen 22 YSYLLDLLLS----NG--RPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSA------QTTSNQLQKIIESKLEKR 89 (272)
T ss_dssp HHHHHHHHHH----CT--EEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-T------THHHHHHHHCCCTTECEC
T ss_pred HHHHHHHHHH----cC--CcEEEECCCCCchhHHHHhhhccCCccccceeEeeccC------CCCHHHHHHHHhhcEEcC
Confidence 4677777776 23 4679999999999999998877655321 1 122111 01223333222111110
Q ss_pred -----hhhcCCceEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccC----CCCCccEEEeeCC
Q 019334 133 -----VQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESD----ITNRIPIIFTGND 203 (342)
Q Consensus 133 -----~~~~~~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~----~~~~V~VIatTNr 203 (342)
-+..++-+|+|||||.--.+..-+++ .+...|-.++|. +|-|+..+ ...+|-+|+|.|.
T Consensus 90 ~~~~~gP~~~k~lv~fiDDlN~p~~d~ygtq------~~iElLRQ~i~~------~g~yd~~~~~~~~i~~i~~vaa~~p 157 (272)
T PF12775_consen 90 RGRVYGPPGGKKLVLFIDDLNMPQPDKYGTQ------PPIELLRQLIDY------GGFYDRKKLEWKSIEDIQFVAAMNP 157 (272)
T ss_dssp TTEEEEEESSSEEEEEEETTT-S---TTS--------HHHHHHHHHHHC------SEEECTTTTEEEEECSEEEEEEESS
T ss_pred CCCCCCCCCCcEEEEEecccCCCCCCCCCCc------CHHHHHHHHHHh------cCcccCCCcEEEEEeeeEEEEecCC
Confidence 01236789999999987543211333 344555555552 34333221 1347888888874
Q ss_pred CC---CCccCCCCCCCCcceecC--CCHHHHHHHHHHHhh
Q 019334 204 FS---TIYAPLIRDGRMEKFYWQ--PNLEDILNIVHRMYE 238 (342)
Q Consensus 204 ~~---~LdpaLlRpGRfD~~i~v--P~~~~R~~Il~~~~~ 238 (342)
.. .|++-|+| .|= .+++ |+.+.-..|+..++.
T Consensus 158 ~~Gr~~is~R~~r--~f~-i~~~~~p~~~sl~~If~~il~ 194 (272)
T PF12775_consen 158 TGGRNPISPRFLR--HFN-ILNIPYPSDESLNTIFSSILQ 194 (272)
T ss_dssp TTT--SHHHHHHT--TEE-EEE----TCCHHHHHHHHHHH
T ss_pred CCCCCCCChHHhh--heE-EEEecCCChHHHHHHHHHHHh
Confidence 22 25554444 222 2333 899988888876554
No 218
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=98.16 E-value=6.1e-06 Score=85.93 Aligned_cols=134 Identities=16% Similarity=0.189 Sum_probs=80.4
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHH---hCCceEEeecccccc-----cccCCcHH--------HHHHHHHHHHHhhhh
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQA---MGIEPVIMSAGELES-----ERAGEPGK--------LIRERYRTASQVVQN 135 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~---~g~~~i~vs~~eL~s-----~~~GEsEr--------~iR~~F~~A~e~~~~ 135 (342)
+.+.-|+|.|++||||+++|++|-.. .+-||+.++++.+-. ...|..+. .-.-.|+.|
T Consensus 233 ~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~lleseLFG~~~gaftga~~~~~~Gl~e~A------ 306 (526)
T TIGR02329 233 RSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAESLLEAELFGYEEGAFTGARRGGRTGLIEAA------ 306 (526)
T ss_pred CCCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChhHHHHHhcCCcccccccccccccccchhhc------
Confidence 45678999999999999999999865 456999999976632 12221110 001122222
Q ss_pred cCCceEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCCccCCCCCC
Q 019334 136 QGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDG 215 (342)
Q Consensus 136 ~~~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~~~LdpaLlRpG 215 (342)
.--.|||||||..-. .++..|+..+.+-....+++. ......|-||+|||+.- ..+...|
T Consensus 307 --~gGTLfLdeI~~Lp~------------~~Q~~Ll~~L~~~~~~r~g~~---~~~~~dvRiIaat~~~l---~~~v~~g 366 (526)
T TIGR02329 307 --HRGTLFLDEIGEMPL------------PLQTRLLRVLEEREVVRVGGT---EPVPVDVRVVAATHCAL---TTAVQQG 366 (526)
T ss_pred --CCceEEecChHhCCH------------HHHHHHHHHHhcCcEEecCCC---ceeeecceEEeccCCCH---HHHhhhc
Confidence 245799999999742 244556666653222222221 11123578999998743 2456777
Q ss_pred CCcce---------ecCCCHHHHHH
Q 019334 216 RMEKF---------YWQPNLEDILN 231 (342)
Q Consensus 216 RfD~~---------i~vP~~~~R~~ 231 (342)
+|.+. +.+|...+|.+
T Consensus 367 ~fr~dL~~rL~~~~I~lPPLReR~e 391 (526)
T TIGR02329 367 RFRRDLFYRLSILRIALPPLRERPG 391 (526)
T ss_pred chhHHHHHhcCCcEEeCCCchhchh
Confidence 77752 23576666653
No 219
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.12 E-value=2.2e-05 Score=77.10 Aligned_cols=133 Identities=16% Similarity=0.197 Sum_probs=84.0
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHhCCc-------------------------eEEeecccccccccCC-----cHHH
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQAMGIE-------------------------PVIMSAGELESERAGE-----PGKL 121 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~~g~~-------------------------~i~vs~~eL~s~~~GE-----sEr~ 121 (342)
+.|-.++++||+|+|||++|+++|+.+-+. ++.+++..= ++-.|. +=..
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~-~~~~g~~~~~I~id~ 97 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSD-EPENGRKLLQIKIDA 97 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccc-cccccccCCCcCHHH
Confidence 899999999999999999999999987642 222222100 000111 2346
Q ss_pred HHHHHHHHHHhhhhcCCceEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEee
Q 019334 122 IRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTG 201 (342)
Q Consensus 122 iR~~F~~A~e~~~~~~~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatT 201 (342)
||++-+.+.. .+..+.--|++||++|..-. + -...|+..+.. . ..++.+|.+|
T Consensus 98 iR~l~~~~~~-~p~~~~~kV~iiEp~~~Ld~-----------~-a~naLLk~LEe-------------p-~~~~~~Ilvt 150 (325)
T PRK08699 98 VREIIDNVYL-TSVRGGLRVILIHPAESMNL-----------Q-AANSLLKVLEE-------------P-PPQVVFLLVS 150 (325)
T ss_pred HHHHHHHHhh-CcccCCceEEEEechhhCCH-----------H-HHHHHHHHHHh-------------C-cCCCEEEEEe
Confidence 7887766643 22246678999999998732 1 12234444442 2 2346677799
Q ss_pred CCCCCCccCCCCCCCCcceecC-CCHHHHHHHHH
Q 019334 202 NDFSTIYAPLIRDGRMEKFYWQ-PNLEDILNIVH 234 (342)
Q Consensus 202 Nr~~~LdpaLlRpGRfD~~i~v-P~~~~R~~Il~ 234 (342)
++++.|.|.++. |.-.+.+. |+.++-.+-|.
T Consensus 151 h~~~~ll~ti~S--Rc~~~~~~~~~~~~~~~~L~ 182 (325)
T PRK08699 151 HAADKVLPTIKS--RCRKMVLPAPSHEEALAYLR 182 (325)
T ss_pred CChHhChHHHHH--HhhhhcCCCCCHHHHHHHHH
Confidence 999999999877 55444443 67776665554
No 220
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.12 E-value=7.8e-06 Score=82.97 Aligned_cols=74 Identities=15% Similarity=0.149 Sum_probs=53.8
Q ss_pred EEeecCCCCCHHHHHHHHHHHhCC-----c-eEEeeccc---------------ccccccCCcHHHHHHH---HHHHHHh
Q 019334 77 LGIWGGKGQGKSFQTELIFQAMGI-----E-PVIMSAGE---------------LESERAGEPGKLIRER---YRTASQV 132 (342)
Q Consensus 77 lgL~GPPG~GKTllaravA~~~g~-----~-~i~vs~~e---------------L~s~~~GEsEr~iR~~---F~~A~e~ 132 (342)
.||.||||||||++++.|++.... . ++.++..- +.+.+-..++..++-+ ...|...
T Consensus 172 ~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~Ae~~ 251 (416)
T PRK09376 172 GLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEKAKRL 251 (416)
T ss_pred EEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHHHHHH
Confidence 678899999999999999987744 3 33344332 5677778888888844 4444433
Q ss_pred hhhcCCceEEEeecccccC
Q 019334 133 VQNQGKMSCLMINDIDAGL 151 (342)
Q Consensus 133 ~~~~~~PcILfIDEIDAg~ 151 (342)
. ..|+.++||||||...+
T Consensus 252 ~-e~G~dVlL~iDsItR~a 269 (416)
T PRK09376 252 V-EHGKDVVILLDSITRLA 269 (416)
T ss_pred H-HcCCCEEEEEEChHHHH
Confidence 3 36899999999999744
No 221
>PLN02200 adenylate kinase family protein
Probab=98.10 E-value=3.1e-06 Score=79.21 Aligned_cols=45 Identities=36% Similarity=0.510 Sum_probs=39.1
Q ss_pred hcCCCCCeEEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccccc
Q 019334 68 LLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESER 114 (342)
Q Consensus 68 ~~~~k~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~~ 114 (342)
.++.+.|.+++|.||||||||++|+.+|+++|+ .+++.++|+.+.
T Consensus 37 ~~~~~~~~ii~I~G~PGSGKsT~a~~La~~~g~--~his~gdllR~~ 81 (234)
T PLN02200 37 SSKEKTPFITFVLGGPGSGKGTQCEKIVETFGF--KHLSAGDLLRRE 81 (234)
T ss_pred CccCCCCEEEEEECCCCCCHHHHHHHHHHHhCC--eEEEccHHHHHH
Confidence 355678899999999999999999999999984 689999998653
No 222
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.10 E-value=1.5e-05 Score=70.37 Aligned_cols=116 Identities=17% Similarity=0.144 Sum_probs=70.0
Q ss_pred CCCCeEEEeecCCCCCHHHHHHHHHHHhCCceEE---------------eeccccccccc-C----CcHHHHHHHHHHHH
Q 019334 71 VKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVI---------------MSAGELESERA-G----EPGKLIRERYRTAS 130 (342)
Q Consensus 71 ~k~PlglgL~GPPG~GKTllaravA~~~g~~~i~---------------vs~~eL~s~~~-G----EsEr~iR~~F~~A~ 130 (342)
-+.|-.+++|||+|+||+.+|+++|+.+-..-.. -.-++++--.. + =.-..||++...+.
T Consensus 16 ~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~i~i~~ir~i~~~~~ 95 (162)
T PF13177_consen 16 GRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKKSIKIDQIREIIEFLS 95 (162)
T ss_dssp TC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSSSBSHHHHHHHHHHCT
T ss_pred CCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccchhhHHHHHHHHHHHH
Confidence 4889999999999999999999999876542221 11122221000 0 02366777766553
Q ss_pred HhhhhcCCceEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCCccC
Q 019334 131 QVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAP 210 (342)
Q Consensus 131 e~~~~~~~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~~~Ldpa 210 (342)
.. +..+..-|++|||+|.... . ....||-.|. ++ ..++.+|.+|+.++.|.|.
T Consensus 96 ~~-~~~~~~KviiI~~ad~l~~-----------~-a~NaLLK~LE-------------ep-p~~~~fiL~t~~~~~il~T 148 (162)
T PF13177_consen 96 LS-PSEGKYKVIIIDEADKLTE-----------E-AQNALLKTLE-------------EP-PENTYFILITNNPSKILPT 148 (162)
T ss_dssp SS--TTSSSEEEEEETGGGS-H-----------H-HHHHHHHHHH-------------ST-TTTEEEEEEES-GGGS-HH
T ss_pred HH-HhcCCceEEEeehHhhhhH-----------H-HHHHHHHHhc-------------CC-CCCEEEEEEECChHHChHH
Confidence 32 2346788999999998741 1 2234554444 22 5688899999999999887
Q ss_pred CCC
Q 019334 211 LIR 213 (342)
Q Consensus 211 LlR 213 (342)
++=
T Consensus 149 I~S 151 (162)
T PF13177_consen 149 IRS 151 (162)
T ss_dssp HHT
T ss_pred HHh
Confidence 653
No 223
>PRK06762 hypothetical protein; Provisional
Probab=98.09 E-value=5.9e-06 Score=71.46 Aligned_cols=42 Identities=17% Similarity=0.314 Sum_probs=35.4
Q ss_pred CeEEEeecCCCCCHHHHHHHHHHHhCCceEEeeccccccccc
Q 019334 74 PLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERA 115 (342)
Q Consensus 74 PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~~~ 115 (342)
|..++|.|+||||||++|+.+++.++.+.+.++..++.....
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r~~l~ 43 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVRRDML 43 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHHHHhc
Confidence 788999999999999999999999977777788766665443
No 224
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.07 E-value=1.4e-05 Score=75.91 Aligned_cols=78 Identities=18% Similarity=0.188 Sum_probs=50.8
Q ss_pred CCCCeEEEeecCCCCCHHHHHHHHHHHhCCc------eEEeecc------cc---------cccccCCc-HHHHH---HH
Q 019334 71 VKVPLILGIWGGKGQGKSFQTELIFQAMGIE------PVIMSAG------EL---------ESERAGEP-GKLIR---ER 125 (342)
Q Consensus 71 ~k~PlglgL~GPPG~GKTllaravA~~~g~~------~i~vs~~------eL---------~s~~~GEs-Er~iR---~~ 125 (342)
+...-.++|.||+|||||++++.+++..... ++.++.. ++ .+. .++| ...++ .+
T Consensus 13 i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~-~~~~~~~~~~~~~~~ 91 (249)
T cd01128 13 IGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIAST-FDEPPERHVQVAEMV 91 (249)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEec-CCCCHHHHHHHHHHH
Confidence 3444568899999999999999999888653 3332332 12 332 3433 33333 44
Q ss_pred HHHHHHhhhhcCCceEEEeeccccc
Q 019334 126 YRTASQVVQNQGKMSCLMINDIDAG 150 (342)
Q Consensus 126 F~~A~e~~~~~~~PcILfIDEIDAg 150 (342)
...|.... ..|+..+||||||...
T Consensus 92 ~~~a~~~~-~~G~~vll~iDei~r~ 115 (249)
T cd01128 92 LEKAKRLV-EHGKDVVILLDSITRL 115 (249)
T ss_pred HHHHHHHH-HCCCCEEEEEECHHHh
Confidence 44454333 3689999999999964
No 225
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.07 E-value=6.9e-05 Score=73.73 Aligned_cols=149 Identities=13% Similarity=0.154 Sum_probs=90.8
Q ss_pred CCCCCeEEEeecCCCCCHHHHHHHHHHHhCCceE-------------Eeecccccc----c-ccCC------cHHHHHHH
Q 019334 70 NVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPV-------------IMSAGELES----E-RAGE------PGKLIRER 125 (342)
Q Consensus 70 ~~k~PlglgL~GPPG~GKTllaravA~~~g~~~i-------------~vs~~eL~s----~-~~GE------sEr~iR~~ 125 (342)
.-+.|-.++++||+|+||+++|.++|+.+-+.-- .=+-+|+.- + ..|+ +=..||++
T Consensus 22 ~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l 101 (319)
T PRK08769 22 AGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREI 101 (319)
T ss_pred cCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHH
Confidence 3488999999999999999999999988765310 001122221 0 1111 12256665
Q ss_pred HHHHHHhhhhcCCceEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCC
Q 019334 126 YRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFS 205 (342)
Q Consensus 126 F~~A~e~~~~~~~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~~ 205 (342)
-+.+... +..+.=-|++||+.|+.-. . -...||..+. ++ ..++.+|.+||.++
T Consensus 102 ~~~~~~~-p~~g~~kV~iI~~ae~m~~-----------~-AaNaLLKtLE-------------EP-p~~~~fiL~~~~~~ 154 (319)
T PRK08769 102 SQKLALT-PQYGIAQVVIVDPADAINR-----------A-ACNALLKTLE-------------EP-SPGRYLWLISAQPA 154 (319)
T ss_pred HHHHhhC-cccCCcEEEEeccHhhhCH-----------H-HHHHHHHHhh-------------CC-CCCCeEEEEECChh
Confidence 5544322 1234457999999999731 1 1223554444 33 56788888899999
Q ss_pred CCccCCCCCCCCcceecC-CCHHHHHHHHHHHhhcCCCCHHHHHHHh
Q 019334 206 TIYAPLIRDGRMEKFYWQ-PNLEDILNIVHRMYEKDGITKDEVGSIV 251 (342)
Q Consensus 206 ~LdpaLlRpGRfD~~i~v-P~~~~R~~Il~~~~~~~~~s~~di~~lv 251 (342)
.|.|.++= |.-.+.+. |+.++-.+.|.. .+++..+...++
T Consensus 155 ~lLpTIrS--RCq~i~~~~~~~~~~~~~L~~----~~~~~~~a~~~~ 195 (319)
T PRK08769 155 RLPATIRS--RCQRLEFKLPPAHEALAWLLA----QGVSERAAQEAL 195 (319)
T ss_pred hCchHHHh--hheEeeCCCcCHHHHHHHHHH----cCCChHHHHHHH
Confidence 99988765 66665553 777766655542 356665544444
No 226
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=98.06 E-value=3.5e-05 Score=69.08 Aligned_cols=74 Identities=18% Similarity=0.205 Sum_probs=46.1
Q ss_pred eEEEeecCCCCCHHHHHHHHHHH---hCCceEEeeccccccc-----ccC----------------CcHHHHHHHHHHHH
Q 019334 75 LILGIWGGKGQGKSFQTELIFQA---MGIEPVIMSAGELESE-----RAG----------------EPGKLIRERYRTAS 130 (342)
Q Consensus 75 lglgL~GPPG~GKTllaravA~~---~g~~~i~vs~~eL~s~-----~~G----------------EsEr~iR~~F~~A~ 130 (342)
..+.|+||||||||++|..+|.+ .|-..+-++..+ ++. ... +.+.. -+......
T Consensus 13 ~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~-~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~l~ 90 (209)
T TIGR02237 13 TITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG-LSPERFKQIAEDRPERALSNFIVFEVFDFDEQ-GVAIQKTS 90 (209)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC-CCHHHHHHHHHhChHHHhcCEEEEECCCHHHH-HHHHHHHH
Confidence 57999999999999999888854 355677777755 221 000 00111 11122222
Q ss_pred HhhhhcCCceEEEeecccccC
Q 019334 131 QVVQNQGKMSCLMINDIDAGL 151 (342)
Q Consensus 131 e~~~~~~~PcILfIDEIDAg~ 151 (342)
+.+. .++|++|+||-|.+..
T Consensus 91 ~~~~-~~~~~lvVIDSis~l~ 110 (209)
T TIGR02237 91 KFID-RDSASLVVVDSFTALY 110 (209)
T ss_pred HHHh-hcCccEEEEeCcHHHh
Confidence 3332 3579999999999975
No 227
>PRK13947 shikimate kinase; Provisional
Probab=98.06 E-value=1.3e-05 Score=69.29 Aligned_cols=41 Identities=12% Similarity=0.092 Sum_probs=33.4
Q ss_pred EEeecCCCCCHHHHHHHHHHHhCCceEEeecccccccccCCcH
Q 019334 77 LGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPG 119 (342)
Q Consensus 77 lgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~~~GEsE 119 (342)
+.|.||||||||++++.+|+.+|.+|+. ..++.....|.+.
T Consensus 4 I~l~G~~GsGKst~a~~La~~lg~~~id--~d~~~~~~~g~~~ 44 (171)
T PRK13947 4 IVLIGFMGTGKTTVGKRVATTLSFGFID--TDKEIEKMTGMTV 44 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCEEE--CchhhhhhcCCcH
Confidence 7889999999999999999999998865 4456666566654
No 228
>PRK14532 adenylate kinase; Provisional
Probab=98.06 E-value=3.7e-06 Score=74.32 Aligned_cols=36 Identities=25% Similarity=0.405 Sum_probs=31.6
Q ss_pred EEeecCCCCCHHHHHHHHHHHhCCceEEeecccccccc
Q 019334 77 LGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESER 114 (342)
Q Consensus 77 lgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~~ 114 (342)
++|.||||||||++|+.+|+++| +.+++.++++.+.
T Consensus 3 i~~~G~pGsGKsT~a~~la~~~g--~~~is~~d~lr~~ 38 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEERG--MVQLSTGDMLRAA 38 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC--CeEEeCcHHHHHH
Confidence 77899999999999999999998 5667888888754
No 229
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.05 E-value=3.2e-05 Score=76.43 Aligned_cols=134 Identities=15% Similarity=0.127 Sum_probs=77.9
Q ss_pred CeEEEeecCCCCCHHHHHHHHHHH---hCCceEEeecccccccccCCcHHHHHHHHHHHHHhh----------hhcCCce
Q 019334 74 PLILGIWGGKGQGKSFQTELIFQA---MGIEPVIMSAGELESERAGEPGKLIRERYRTASQVV----------QNQGKMS 140 (342)
Q Consensus 74 PlglgL~GPPG~GKTllaravA~~---~g~~~i~vs~~eL~s~~~GEsEr~iR~~F~~A~e~~----------~~~~~Pc 140 (342)
..-++|+|.+||||+++|+++-.. .+.+|+.++++.+...+. -.++|....... -......
T Consensus 162 ~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~------~~~lfg~~~~~~~~~~~~~~g~~~~a~~g 235 (441)
T PRK10365 162 EATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLL------ESELFGHEKGAFTGADKRREGRFVEADGG 235 (441)
T ss_pred CCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHH------HHHhcCCCCCCcCCCCcCCCCceeECCCC
Confidence 456888999999999999999754 457999999987642211 111221110000 0012378
Q ss_pred EEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCCccCCCCCCCCcc-
Q 019334 141 CLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEK- 219 (342)
Q Consensus 141 ILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~~~LdpaLlRpGRfD~- 219 (342)
+|||||||...+. ++..|+..++.-. +...|.- ......+-||+||++.- ..++.+|+|.+
T Consensus 236 tl~ldei~~l~~~------------~q~~l~~~l~~~~-~~~~~~~--~~~~~~~rii~~t~~~~---~~~~~~~~~~~~ 297 (441)
T PRK10365 236 TLFLDEIGDISPM------------MQVRLLRAIQERE-VQRVGSN--QTISVDVRLIAATHRDL---AAEVNAGRFRQD 297 (441)
T ss_pred EEEEeccccCCHH------------HHHHHHHHHccCc-EEeCCCC--ceeeeceEEEEeCCCCH---HHHHHcCCchHH
Confidence 8999999997531 2334555555311 1111100 11123567888887743 35778899975
Q ss_pred --------eecCCCHHHHHH
Q 019334 220 --------FYWQPNLEDILN 231 (342)
Q Consensus 220 --------~i~vP~~~~R~~ 231 (342)
.+.+|...+|.+
T Consensus 298 l~~~l~~~~i~~ppLreR~~ 317 (441)
T PRK10365 298 LYYRLNVVAIEVPSLRQRRE 317 (441)
T ss_pred HHHHhccceecCCChhhcch
Confidence 233576666644
No 230
>PHA02774 E1; Provisional
Probab=98.04 E-value=3.3e-05 Score=81.62 Aligned_cols=110 Identities=16% Similarity=0.188 Sum_probs=68.6
Q ss_pred HHHHHHHHHHhhcCCCCCe--EEEeecCCCCCHHHHHHHHHHHhCCceEE-eecccccccccCCcHHHHHHHHHHHHHhh
Q 019334 57 LCHIVKNYIAHLLNVKVPL--ILGIWGGKGQGKSFQTELIFQAMGIEPVI-MSAGELESERAGEPGKLIRERYRTASQVV 133 (342)
Q Consensus 57 ~~hi~K~~l~~~~~~k~Pl--glgL~GPPG~GKTllaravA~~~g~~~i~-vs~~eL~s~~~GEsEr~iR~~F~~A~e~~ 133 (342)
....+|+|+. ..|+ .++||||||||||++|-++++.++-..+. |+..+-+ | +..+.+
T Consensus 420 fl~~lk~~l~-----~~PKknciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~~s~F--w-----------Lqpl~d-- 479 (613)
T PHA02774 420 FLTALKDFLK-----GIPKKNCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNSKSHF--W-----------LQPLAD-- 479 (613)
T ss_pred HHHHHHHHHh-----cCCcccEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEECcccc--c-----------cchhcc--
Confidence 4456788876 5564 89999999999999999999998755544 4432111 1 222222
Q ss_pred hhcCCceEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCC
Q 019334 134 QNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGND 203 (342)
Q Consensus 134 ~~~~~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr 203 (342)
--|++|||+-.-+ ..-+...|-+++||- .|.++--....-....-|+|+|||-
T Consensus 480 -----~ki~vlDD~t~~~-----------w~y~d~~Lrn~LdG~-~v~lD~Khk~~~q~k~pPlIITSN~ 532 (613)
T PHA02774 480 -----AKIALLDDATHPC-----------WDYIDTYLRNALDGN-PVSIDCKHKAPVQIKCPPLLITSNI 532 (613)
T ss_pred -----CCEEEEecCcchH-----------HHHHHHHHHHHcCCC-cceeeecccCcccccCCCEEEecCC
Confidence 2588999981111 122444678888863 4555442222222446799999993
No 231
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.03 E-value=2.9e-05 Score=77.18 Aligned_cols=131 Identities=15% Similarity=0.204 Sum_probs=76.8
Q ss_pred eEEEeecCCCCCHHHHHHHHHHHhC---CceEEeecccccccccCCcHHHH-HHHHHH-------HHHh----hhhcCCc
Q 019334 75 LILGIWGGKGQGKSFQTELIFQAMG---IEPVIMSAGELESERAGEPGKLI-RERYRT-------ASQV----VQNQGKM 139 (342)
Q Consensus 75 lglgL~GPPG~GKTllaravA~~~g---~~~i~vs~~eL~s~~~GEsEr~i-R~~F~~-------A~e~----~~~~~~P 139 (342)
.-++|+|++||||+++|+++..... .+|+.++++.+.. ..+ .++|-. |... .. +...
T Consensus 163 ~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~-------~~~~~~lfg~~~~~~~~~~~~~~g~~~-~a~~ 234 (445)
T TIGR02915 163 ITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPE-------NLLESELFGYEKGAFTGAVKQTLGKIE-YAHG 234 (445)
T ss_pred CCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCCh-------HHHHHHhcCCCCCCcCCCccCCCCcee-ECCC
Confidence 4577999999999999999987654 6899999987632 221 112211 0000 00 1235
Q ss_pred eEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCCccCCCCCCCCcc
Q 019334 140 SCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEK 219 (342)
Q Consensus 140 cILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~~~LdpaLlRpGRfD~ 219 (342)
-+|||||||..-. .++..|+..+.+-..-.+++ . ......+-||+|||..- ..+...|+|..
T Consensus 235 gtl~l~~i~~l~~------------~~q~~l~~~l~~~~~~~~~~-~--~~~~~~~rii~~~~~~l---~~~~~~~~~~~ 296 (445)
T TIGR02915 235 GTLFLDEIGDLPL------------NLQAKLLRFLQERVIERLGG-R--EEIPVDVRIVCATNQDL---KRMIAEGTFRE 296 (445)
T ss_pred CEEEEechhhCCH------------HHHHHHHHHHhhCeEEeCCC-C--ceeeeceEEEEecCCCH---HHHHHcCCccH
Confidence 6899999999742 24445665555311011122 1 11123678899987642 14566677765
Q ss_pred e---------ecCCCHHHHHH
Q 019334 220 F---------YWQPNLEDILN 231 (342)
Q Consensus 220 ~---------i~vP~~~~R~~ 231 (342)
. +.+|...+|.+
T Consensus 297 ~L~~~l~~~~i~lPpLr~R~~ 317 (445)
T TIGR02915 297 DLFYRIAEISITIPPLRSRDG 317 (445)
T ss_pred HHHHHhccceecCCCchhchh
Confidence 2 33587777764
No 232
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.02 E-value=7.4e-06 Score=85.29 Aligned_cols=46 Identities=20% Similarity=0.295 Sum_probs=38.2
Q ss_pred HHHHHHHhh-cCCCCCeEEEeecCCCCCHHHHHHHHHHHhCCceEEe
Q 019334 60 IVKNYIAHL-LNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIM 105 (342)
Q Consensus 60 i~K~~l~~~-~~~k~PlglgL~GPPG~GKTllaravA~~~g~~~i~v 105 (342)
-++.|+... .+....++|+|.||||||||+.++++|+++|..++.-
T Consensus 30 eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew 76 (519)
T PF03215_consen 30 EVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEW 76 (519)
T ss_pred HHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEe
Confidence 578888763 3444567999999999999999999999999977764
No 233
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.02 E-value=3.5e-05 Score=67.02 Aligned_cols=32 Identities=22% Similarity=0.217 Sum_probs=24.2
Q ss_pred EEEeecCCCCCHHHHHHHHHHH---hCCceEEeec
Q 019334 76 ILGIWGGKGQGKSFQTELIFQA---MGIEPVIMSA 107 (342)
Q Consensus 76 glgL~GPPG~GKTllaravA~~---~g~~~i~vs~ 107 (342)
.++|+||||||||++|..++.+ -|-+.+.++.
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~ 35 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTL 35 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEEC
Confidence 3689999999999999876543 4666666654
No 234
>PRK06696 uridine kinase; Validated
Probab=98.01 E-value=1.6e-05 Score=73.01 Aligned_cols=42 Identities=19% Similarity=0.273 Sum_probs=37.8
Q ss_pred CCCCeEEEeecCCCCCHHHHHHHHHHHh---CCceEEeecccccc
Q 019334 71 VKVPLILGIWGGKGQGKSFQTELIFQAM---GIEPVIMSAGELES 112 (342)
Q Consensus 71 ~k~PlglgL~GPPG~GKTllaravA~~~---g~~~i~vs~~eL~s 112 (342)
.+.|.+|+|.||||||||++|+.++..+ |.+.++++..+++.
T Consensus 19 ~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~ 63 (223)
T PRK06696 19 LTRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFHN 63 (223)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccccC
Confidence 3578999999999999999999999998 78888888888875
No 235
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.01 E-value=1.8e-05 Score=84.63 Aligned_cols=138 Identities=20% Similarity=0.334 Sum_probs=92.0
Q ss_pred eEEEeecCCCCCHHHHHHHHHHHhC----------CceEEeecccccc----------cccCCc------HHHHHHHHHH
Q 019334 75 LILGIWGGKGQGKSFQTELIFQAMG----------IEPVIMSAGELES----------ERAGEP------GKLIRERYRT 128 (342)
Q Consensus 75 lglgL~GPPG~GKTllaravA~~~g----------~~~i~vs~~eL~s----------~~~GEs------Er~iR~~F~~ 128 (342)
..+.|+|-||+|||..+..|-.++. ..++.|+|-.|.+ .+.|+. -..++..|..
T Consensus 423 ~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~ 502 (767)
T KOG1514|consen 423 SCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFTV 502 (767)
T ss_pred eeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhcc
Confidence 3688999999999999999998665 4677888855543 345553 2345555542
Q ss_pred HHHhhhhcCCceEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCCc
Q 019334 129 ASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIY 208 (342)
Q Consensus 129 A~e~~~~~~~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~~~Ld 208 (342)
. +.+..||||+|||+|.+++| +|-| |-|+.| |-..+ ..++.||+-+|--+ ||
T Consensus 503 ~----k~~~~~~VvLiDElD~Lvtr---------~QdV---lYn~fd----------Wpt~~-~sKLvvi~IaNTmd-lP 554 (767)
T KOG1514|consen 503 P----KPKRSTTVVLIDELDILVTR---------SQDV---LYNIFD----------WPTLK-NSKLVVIAIANTMD-LP 554 (767)
T ss_pred C----CCCCCCEEEEeccHHHHhcc---------cHHH---HHHHhc----------CCcCC-CCceEEEEeccccc-CH
Confidence 2 23578999999999999975 2445 456666 65544 67788888777654 33
Q ss_pred cCCCC---CCCCc--ceecCC-CHHHHHHHHHHHhhcC
Q 019334 209 APLIR---DGRME--KFYWQP-NLEDILNIVHRMYEKD 240 (342)
Q Consensus 209 paLlR---pGRfD--~~i~vP-~~~~R~~Il~~~~~~~ 240 (342)
.-++= .-|++ |+.|.| +.++-.+|+..-++.-
T Consensus 555 Er~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~ 592 (767)
T KOG1514|consen 555 ERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGL 592 (767)
T ss_pred HHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcch
Confidence 33332 12444 345667 7788888887666544
No 236
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.00 E-value=1.7e-05 Score=67.46 Aligned_cols=101 Identities=21% Similarity=0.292 Sum_probs=62.5
Q ss_pred CCeEEEeecCCCCCHHHHHHHHHHHhCC---ceEEeecccccccccCCcHHHHHHHHHHHHHhhhhcCCceEEEeecccc
Q 019334 73 VPLILGIWGGKGQGKSFQTELIFQAMGI---EPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDA 149 (342)
Q Consensus 73 ~PlglgL~GPPG~GKTllaravA~~~g~---~~i~vs~~eL~s~~~GEsEr~iR~~F~~A~e~~~~~~~PcILfIDEIDA 149 (342)
...-|+|+|+||+||+++|+++....+- +|+.++..++- .+.++.| +...|||+|||.
T Consensus 20 ~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~-----------~~~l~~a--------~~gtL~l~~i~~ 80 (138)
T PF14532_consen 20 SSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP-----------AELLEQA--------KGGTLYLKNIDR 80 (138)
T ss_dssp SSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC-----------HHHHHHC--------TTSEEEEECGCC
T ss_pred CCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc-----------HHHHHHc--------CCCEEEECChHH
Confidence 3455688999999999999999988774 55655555433 3344433 378999999999
Q ss_pred cCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCCccCCCCCCCCcce
Q 019334 150 GLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKF 220 (342)
Q Consensus 150 g~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~~~LdpaLlRpGRfD~~ 220 (342)
.-. ..| ..|+..+.. .+ ..++-+|+++..+ + ..|...|+|++.
T Consensus 81 L~~---------~~Q---~~L~~~l~~------------~~-~~~~RlI~ss~~~--l-~~l~~~~~~~~~ 123 (138)
T PF14532_consen 81 LSP---------EAQ---RRLLDLLKR------------QE-RSNVRLIASSSQD--L-EELVEEGRFSPD 123 (138)
T ss_dssp S-H---------HHH---HHHHHHHHH------------CT-TTTSEEEEEECC---C-CCHHHHSTHHHH
T ss_pred CCH---------HHH---HHHHHHHHh------------cC-CCCeEEEEEeCCC--H-HHHhhccchhHH
Confidence 742 122 234433331 11 3567788887532 1 245677777753
No 237
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.99 E-value=0.00043 Score=66.83 Aligned_cols=127 Identities=13% Similarity=0.147 Sum_probs=85.0
Q ss_pred ccccHHHHHHHHHHHHHHHHHh----hcCCCCCeEEEeecCCCCCHHHHHHHHHHHh---CCceEEeecccccccccCCc
Q 019334 46 YYIAPVFMASLLCHIVKNYIAH----LLNVKVPLILGIWGGKGQGKSFQTELIFQAM---GIEPVIMSAGELESERAGEP 118 (342)
Q Consensus 46 ~y~~~~f~d~l~~hi~K~~l~~----~~~~k~PlglgL~GPPG~GKTllaravA~~~---g~~~i~vs~~eL~s~~~GEs 118 (342)
.|.+.+..|.++..--|+.+-+ ...-.+-.-|+|||.-|+|||+++||+.+++ |..+|.|+..+|..
T Consensus 53 ~~~~i~L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl~~------ 126 (287)
T COG2607 53 DPDPIDLADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDLAT------ 126 (287)
T ss_pred CCCCcCHHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHHHhh------
Confidence 4555677777777666666643 1222455799999999999999999999776 45788888888773
Q ss_pred HHHHHHHHHHHHHhhhhcCCceEEEeecccccCCCCC-C-CcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCcc
Q 019334 119 GKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG-N-TQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIP 196 (342)
Q Consensus 119 Er~iR~~F~~A~e~~~~~~~PcILfIDEIDAg~~r~~-~-t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~ 196 (342)
+-.++..-+ .+...-|||.||+ .|+ + +.+ + .|=..||| .+ +.+-.+|.
T Consensus 127 ---Lp~l~~~Lr----~~~~kFIlFcDDL-----SFe~gd~~y----K----~LKs~LeG----~v------e~rP~NVl 176 (287)
T COG2607 127 ---LPDLVELLR----ARPEKFILFCDDL-----SFEEGDDAY----K----ALKSALEG----GV------EGRPANVL 176 (287)
T ss_pred ---HHHHHHHHh----cCCceEEEEecCC-----CCCCCchHH----H----HHHHHhcC----Cc------ccCCCeEE
Confidence 334443332 2456899999987 233 1 111 2 34445564 12 22247899
Q ss_pred EEEeeCCCCCCc
Q 019334 197 IIFTGNDFSTIY 208 (342)
Q Consensus 197 VIatTNr~~~Ld 208 (342)
|.||.||-..|+
T Consensus 177 ~YATSNRRHLl~ 188 (287)
T COG2607 177 FYATSNRRHLLP 188 (287)
T ss_pred EEEecCCccccc
Confidence 999999988766
No 238
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=97.99 E-value=4.3e-06 Score=83.38 Aligned_cols=135 Identities=14% Similarity=0.203 Sum_probs=77.7
Q ss_pred CCeEEEeecCCCCCHHHHHHHHHHHh---CCceEEeecccccccc-----cCCcHHHHHHHHHHHHH----hhhhcCCce
Q 019334 73 VPLILGIWGGKGQGKSFQTELIFQAM---GIEPVIMSAGELESER-----AGEPGKLIRERYRTASQ----VVQNQGKMS 140 (342)
Q Consensus 73 ~PlglgL~GPPG~GKTllaravA~~~---g~~~i~vs~~eL~s~~-----~GEsEr~iR~~F~~A~e----~~~~~~~Pc 140 (342)
.+..++|.|.+||||+++|+++.... +.+|+.++++.+-+.+ .|.. +..|..|.. ... .....
T Consensus 156 ~~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~~~lfg~~----~~~~~~~~~~~~g~~~-~a~~g 230 (463)
T TIGR01818 156 SDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIESELFGHE----KGAFTGANTRRQGRFE-QADGG 230 (463)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHhcCCC----CCCCCCcccCCCCcEE-ECCCC
Confidence 44668999999999999999998764 4699999987763221 1210 001111100 000 12368
Q ss_pred EEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCCccCCCCCCCCcc-
Q 019334 141 CLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEK- 219 (342)
Q Consensus 141 ILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~~~LdpaLlRpGRfD~- 219 (342)
.|||||||..-. .+...|+..++.-..-.+++. .....++-||+|||..- ..+++.|+|.+
T Consensus 231 tl~l~ei~~l~~------------~~q~~ll~~l~~~~~~~~~~~---~~~~~~~rii~~~~~~l---~~~~~~~~f~~~ 292 (463)
T TIGR01818 231 TLFLDEIGDMPL------------DAQTRLLRVLADGEFYRVGGR---TPIKVDVRIVAATHQNL---EALVRQGKFRED 292 (463)
T ss_pred eEEEEchhhCCH------------HHHHHHHHHHhcCcEEECCCC---ceeeeeeEEEEeCCCCH---HHHHHcCCcHHH
Confidence 899999999742 134455655552110011110 11123577999987642 25678888874
Q ss_pred --------eecCCCHHHHH
Q 019334 220 --------FYWQPNLEDIL 230 (342)
Q Consensus 220 --------~i~vP~~~~R~ 230 (342)
.|.+|...+|.
T Consensus 293 L~~rl~~~~i~lPpLr~R~ 311 (463)
T TIGR01818 293 LFHRLNVIRIHLPPLRERR 311 (463)
T ss_pred HHHHhCcceecCCCcccch
Confidence 33457766554
No 239
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=97.99 E-value=1.9e-05 Score=74.46 Aligned_cols=39 Identities=21% Similarity=0.134 Sum_probs=31.6
Q ss_pred CeEEEeecCCCCCHHHHHHHHHHHhCCceEEeeccccccc
Q 019334 74 PLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESE 113 (342)
Q Consensus 74 PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~ 113 (342)
|..+++.||||||||++|+.+++++. +++.++..++...
T Consensus 2 ~~liil~G~pGSGKSTla~~L~~~~~-~~~~l~~D~~r~~ 40 (300)
T PHA02530 2 MKIILTVGVPGSGKSTWAREFAAKNP-KAVNVNRDDLRQS 40 (300)
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHHCC-CCEEEeccHHHHH
Confidence 57889999999999999999999993 3566677666443
No 240
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=97.98 E-value=1.1e-05 Score=80.99 Aligned_cols=134 Identities=13% Similarity=0.179 Sum_probs=78.2
Q ss_pred CCeEEEeecCCCCCHHHHHHHHHHHhC---CceEEeecccccccccCCcHHHHHHHHHHHH-------H----hhhhcCC
Q 019334 73 VPLILGIWGGKGQGKSFQTELIFQAMG---IEPVIMSAGELESERAGEPGKLIRERYRTAS-------Q----VVQNQGK 138 (342)
Q Consensus 73 ~PlglgL~GPPG~GKTllaravA~~~g---~~~i~vs~~eL~s~~~GEsEr~iR~~F~~A~-------e----~~~~~~~ 138 (342)
...-++|.|++|||||++|+++..... .+|+.++++.+-. +..-.++|-... . ... ...
T Consensus 160 ~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~------~~~~~~lfg~~~g~~~~~~~~~~g~~~-~a~ 232 (469)
T PRK10923 160 SSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPK------DLIESELFGHEKGAFTGANTIRQGRFE-QAD 232 (469)
T ss_pred cCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCH------HHHHHHhcCCCCCCCCCCCcCCCCCee-ECC
Confidence 345699999999999999999988764 6999999987732 111122221110 0 000 112
Q ss_pred ceEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCCccCCCCCCCCc
Q 019334 139 MSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRME 218 (342)
Q Consensus 139 PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~~~LdpaLlRpGRfD 218 (342)
.-.|||||||.... .++..|+..+++-....+++ +. .....|-||+|||..- ..+...|+|.
T Consensus 233 ~Gtl~l~~i~~l~~------------~~q~~L~~~l~~~~~~~~~~-~~--~~~~~~rii~~~~~~l---~~~~~~~~~~ 294 (469)
T PRK10923 233 GGTLFLDEIGDMPL------------DVQTRLLRVLADGQFYRVGG-YA--PVKVDVRIIAATHQNL---EQRVQEGKFR 294 (469)
T ss_pred CCEEEEeccccCCH------------HHHHHHHHHHhcCcEEeCCC-CC--eEEeeEEEEEeCCCCH---HHHHHcCCch
Confidence 45789999999752 23446666665322111222 21 1134678999997632 1355566663
Q ss_pred c---------eecCCCHHHHHH
Q 019334 219 K---------FYWQPNLEDILN 231 (342)
Q Consensus 219 ~---------~i~vP~~~~R~~ 231 (342)
. .+.+|...+|.+
T Consensus 295 ~~L~~~l~~~~i~~PpLreR~~ 316 (469)
T PRK10923 295 EDLFHRLNVIRVHLPPLRERRE 316 (469)
T ss_pred HHHHHHhcceeecCCCcccchh
Confidence 3 344676666654
No 241
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=97.98 E-value=2.3e-05 Score=66.56 Aligned_cols=35 Identities=23% Similarity=0.388 Sum_probs=28.6
Q ss_pred EEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccc
Q 019334 76 ILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELES 112 (342)
Q Consensus 76 glgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s 112 (342)
+++|.||||+|||++|+.+++.+++.++ +...+..
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~~~~~i--~~D~~~~ 35 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERLGAPFI--DGDDLHP 35 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhcCCEEE--eCccccc
Confidence 4788999999999999999999987654 5555554
No 242
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.97 E-value=4.8e-06 Score=72.82 Aligned_cols=37 Identities=32% Similarity=0.500 Sum_probs=32.3
Q ss_pred EEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccccc
Q 019334 76 ILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESER 114 (342)
Q Consensus 76 glgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~~ 114 (342)
.++|.||||+|||++|+.+|+++| +.+++.++++.+.
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~--~~~is~~d~lr~~ 37 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFG--FTHLSAGDLLRAE 37 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcC--CeEEECChHHHHH
Confidence 368999999999999999999998 5788888888653
No 243
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=97.95 E-value=1.8e-05 Score=69.69 Aligned_cols=36 Identities=17% Similarity=0.183 Sum_probs=31.3
Q ss_pred eEEEeecCCCCCHHHHHHHHHHHhCCceEEeecccc
Q 019334 75 LILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGEL 110 (342)
Q Consensus 75 lglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL 110 (342)
++++|.||||+|||++|++++++++.++++++...+
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~ 38 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSF 38 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHH
Confidence 578999999999999999999999988887766544
No 244
>PRK08118 topology modulation protein; Reviewed
Probab=97.95 E-value=2e-05 Score=69.95 Aligned_cols=45 Identities=20% Similarity=0.203 Sum_probs=33.9
Q ss_pred EEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccccccCCcHH
Q 019334 76 ILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGK 120 (342)
Q Consensus 76 glgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~~~GEsEr 120 (342)
-+.|.||||||||++|+.+++.++++++.++.=--...|...+..
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~~~w~~~~~~ 47 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWKPNWEGVPKE 47 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcCCCHH
Confidence 478899999999999999999999998877642111235555543
No 245
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.93 E-value=1.5e-05 Score=67.33 Aligned_cols=41 Identities=32% Similarity=0.400 Sum_probs=33.0
Q ss_pred EEeecCCCCCHHHHHHHHHHHhCCceEEeecccccccccCCcH
Q 019334 77 LGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPG 119 (342)
Q Consensus 77 lgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~~~GEsE 119 (342)
++|.||||||||++++++|+++|++++ +..++.....|.+.
T Consensus 2 i~l~G~~GsGKstla~~la~~l~~~~~--~~d~~~~~~~~~~~ 42 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALGLPFV--DLDELIEQRAGMSI 42 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCEE--EchHHHHHHcCCCH
Confidence 688999999999999999999998877 44466665555543
No 246
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.91 E-value=1e-05 Score=70.51 Aligned_cols=36 Identities=39% Similarity=0.517 Sum_probs=30.5
Q ss_pred EEEeecCCCCCHHHHHHHHHHHhCCceEEeeccccccc
Q 019334 76 ILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESE 113 (342)
Q Consensus 76 glgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~ 113 (342)
+++|.||||||||++|+.+|+++| +..++.++++..
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~~~g--~~~~~~g~~~~~ 40 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVEKYG--FTHLSTGDLLRA 40 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC--CcEEeHHHHHHH
Confidence 677889999999999999999998 556777777654
No 247
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=97.90 E-value=1.6e-05 Score=84.16 Aligned_cols=88 Identities=13% Similarity=0.089 Sum_probs=60.2
Q ss_pred ccccccHHHHHHH-HHHHHHHHHHhhcCCCCCeEEEeecCCCCCHHHHHHHHHHHhCCce----EEeec-----cccc-c
Q 019334 44 GDYYIAPVFMASL-LCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEP----VIMSA-----GELE-S 112 (342)
Q Consensus 44 ~~~y~~~~f~d~l-~~hi~K~~l~~~~~~k~PlglgL~GPPG~GKTllaravA~~~g~~~----i~vs~-----~eL~-s 112 (342)
.+.-+|+.|.+.+ +..-++..+..... .+..++|+||||||||++|+++|+.++.+. +.+.- .+++ +
T Consensus 8 ~~~~~~~~~~~~viG~~~a~~~l~~a~~--~~~~~ll~G~pG~GKT~la~~la~~l~~~~~~~~~~~~n~~~~~~~~~~~ 85 (608)
T TIGR00764 8 EEIPVPERLIDQVIGQEEAVEIIKKAAK--QKRNVLLIGEPGVGKSMLAKAMAELLPDEELEDILVYPNPEDPNMPRIVE 85 (608)
T ss_pred cccCcchhhHhhccCHHHHHHHHHHHHH--cCCCEEEECCCCCCHHHHHHHHHHHcCchhheeEEEEeCCCCCchHHHHH
Confidence 3555677777665 44444444443221 234888999999999999999999998652 22222 2333 3
Q ss_pred cccCCcHHHHHHHHHHHHHhh
Q 019334 113 ERAGEPGKLIRERYRTASQVV 133 (342)
Q Consensus 113 ~~~GEsEr~iR~~F~~A~e~~ 133 (342)
-+.|.+++.++..|.+|++..
T Consensus 86 v~~~~g~~~~~~~~~~~~~~~ 106 (608)
T TIGR00764 86 VPAGEGREIVEDYKKKAFKQP 106 (608)
T ss_pred HHHhhchHHHHHHHHHhhccc
Confidence 589999999999999997543
No 248
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.89 E-value=9.7e-05 Score=67.38 Aligned_cols=22 Identities=27% Similarity=-0.025 Sum_probs=20.6
Q ss_pred eEEEeecCCCCCHHHHHHHHHH
Q 019334 75 LILGIWGGKGQGKSFQTELIFQ 96 (342)
Q Consensus 75 lglgL~GPPG~GKTllaravA~ 96 (342)
..++|.||+|||||++.|+++.
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~ 47 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGV 47 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHH
Confidence 7899999999999999999993
No 249
>PRK14531 adenylate kinase; Provisional
Probab=97.89 E-value=1e-05 Score=71.91 Aligned_cols=37 Identities=30% Similarity=0.383 Sum_probs=31.1
Q ss_pred eEEEeecCCCCCHHHHHHHHHHHhCCceEEeeccccccc
Q 019334 75 LILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESE 113 (342)
Q Consensus 75 lglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~ 113 (342)
..++|.||||+|||++|+.+|+++|++ ++|.++++.+
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~--~is~gd~lr~ 39 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLR--HLSTGDLLRS 39 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCC--eEecccHHHH
Confidence 468899999999999999999999855 5667777753
No 250
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=97.89 E-value=2.2e-05 Score=80.47 Aligned_cols=66 Identities=17% Similarity=0.187 Sum_probs=47.2
Q ss_pred hhhcccccccHHHHHHHHHHHHHHHHHhhc-----CCCCCeEEEeecCCCCCHHHHHHHHHHHhC---CceEEeeccccc
Q 019334 40 EYLQGDYYIAPVFMASLLCHIVKNYIAHLL-----NVKVPLILGIWGGKGQGKSFQTELIFQAMG---IEPVIMSAGELE 111 (342)
Q Consensus 40 ~~~~~~~y~~~~f~d~l~~hi~K~~l~~~~-----~~k~PlglgL~GPPG~GKTllaravA~~~g---~~~i~vs~~eL~ 111 (342)
...+..||+| ++.|+.+....+.. ..+.|++|+|.||+|||||++++++...+. .....|+-.+++
T Consensus 179 ~~~~~~~ylP------l~~w~~~~i~~h~~~~~~~~~~~PlIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDDfY 252 (460)
T PLN03046 179 KARIYHYYIP------VFIWCEDQIAEHRSKFKDGDDIPPLVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDDFY 252 (460)
T ss_pred HHHHHHHHHH------HHHHHHHHHHHHHHHhcCCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEECCcc
Confidence 4456778888 77774444443321 235799999999999999999999987774 346667666665
No 251
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.88 E-value=1.2e-05 Score=72.68 Aligned_cols=51 Identities=18% Similarity=0.175 Sum_probs=39.3
Q ss_pred EEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccccccCCcHHHHHHHHHHHHHh
Q 019334 76 ILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQV 132 (342)
Q Consensus 76 glgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~~~GEsEr~iR~~F~~A~e~ 132 (342)
-|+|-||||.|||++|+.+|+. .++.++|.++++....-+.. +.-.++...
T Consensus 2 riiilG~pGaGK~T~A~~La~~--~~i~hlstgd~~r~~~~~~t----~lg~~~k~~ 52 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK--LGLPHLDTGDILRAAIAERT----ELGEEIKKY 52 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH--hCCcEEcHhHHhHhhhccCC----hHHHHHHHH
Confidence 3678899999999999999999 55899999999986554442 334455443
No 252
>PLN02796 D-glycerate 3-kinase
Probab=97.87 E-value=2.6e-05 Score=77.75 Aligned_cols=65 Identities=18% Similarity=0.213 Sum_probs=45.0
Q ss_pred hhcccccccHHHHHHHHHHHHHHHHHhh----c-CCCCCeEEEeecCCCCCHHHHHHHHHHHhCC---ceEEeeccccc
Q 019334 41 YLQGDYYIAPVFMASLLCHIVKNYIAHL----L-NVKVPLILGIWGGKGQGKSFQTELIFQAMGI---EPVIMSAGELE 111 (342)
Q Consensus 41 ~~~~~~y~~~~f~d~l~~hi~K~~l~~~----~-~~k~PlglgL~GPPG~GKTllaravA~~~g~---~~i~vs~~eL~ 111 (342)
..+..||+| ++.++++..-.+. . ..+.|++++|.||+|||||+++++++..+.. ....++..+++
T Consensus 68 ~~~~~~~~P------~~~~il~~l~~~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfY 140 (347)
T PLN02796 68 ARVYHYYLP------VYLWCEDQLEAHRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFY 140 (347)
T ss_pred HHHHHHHcC------cHHHHHHHHHHHHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcc
Confidence 334556666 4556666655542 1 2357899999999999999999999988854 35555555555
No 253
>PRK06547 hypothetical protein; Provisional
Probab=97.87 E-value=2.8e-05 Score=69.68 Aligned_cols=46 Identities=20% Similarity=0.150 Sum_probs=38.6
Q ss_pred CCCCeEEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccccccCCc
Q 019334 71 VKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEP 118 (342)
Q Consensus 71 ~k~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~~~GEs 118 (342)
...|..++|.||+|||||++|+.+++.++++++ +..+++..|.|-+
T Consensus 12 ~~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~--~~d~~~~~~~~~~ 57 (172)
T PRK06547 12 GGGMITVLIDGRSGSGKTTLAGALAARTGFQLV--HLDDLYPGWHGLA 57 (172)
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHHhCCCee--cccceecccccCC
Confidence 478899999999999999999999999987766 4566777776644
No 254
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=97.85 E-value=1.4e-05 Score=79.08 Aligned_cols=55 Identities=25% Similarity=0.260 Sum_probs=48.7
Q ss_pred eEEEeecCCCCCHHHHHHHHHHHhC--CceEEeecccccccccCCcHHHHHHHHHHHH
Q 019334 75 LILGIWGGKGQGKSFQTELIFQAMG--IEPVIMSAGELESERAGEPGKLIRERYRTAS 130 (342)
Q Consensus 75 lglgL~GPPG~GKTllaravA~~~g--~~~i~vs~~eL~s~~~GEsEr~iR~~F~~A~ 130 (342)
+.++|.||||+|||-+|-|++.++| +||..|.++|++|.-+-..|-+ -+.||+|.
T Consensus 65 ravLlaGppgtGKTAlAlaisqELG~kvPFcpmvgSEvyS~EvKKTEvL-menfRRaI 121 (456)
T KOG1942|consen 65 RAVLLAGPPGTGKTALALAISQELGPKVPFCPMVGSEVYSNEVKKTEVL-MENFRRAI 121 (456)
T ss_pred cEEEEecCCCCchhHHHHHHHHHhCCCCCcccccchhhhhhhhhHHHHH-HHHHHHHh
Confidence 7899999999999999999999998 4999999999999877777755 45788875
No 255
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=97.85 E-value=0.00029 Score=71.87 Aligned_cols=167 Identities=19% Similarity=0.152 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCC-eEEEeecCCCCCHHHHHHHHHHHhCCce----------------------------
Q 019334 52 FMASLLCHIVKNYIAHLLNVKVP-LILGIWGGKGQGKSFQTELIFQAMGIEP---------------------------- 102 (342)
Q Consensus 52 f~d~l~~hi~K~~l~~~~~~k~P-lglgL~GPPG~GKTllaravA~~~g~~~---------------------------- 102 (342)
|.-++++.-+|..|- +-.+++- -|++|-|++|+|||+++||+|.-+.---
T Consensus 16 f~aivGqd~lk~aL~-l~av~P~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P~~~c~~c~~k~~e~ 94 (423)
T COG1239 16 FTAIVGQDPLKLALG-LNAVDPQIGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDPEEMCDECRAKGDEL 94 (423)
T ss_pred hhhhcCchHHHHHHh-hhhcccccceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCChhhhhHHHHhhcccc
Confidence 455667777777776 3334433 4899999999999999999998764222
Q ss_pred ------------EEeecccccccccCC--cHHHHHH---HHHHHHHhhhhcCCceEEEeecccccCCCCCCCcccchhHH
Q 019334 103 ------------VIMSAGELESERAGE--PGKLIRE---RYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQI 165 (342)
Q Consensus 103 ------------i~vs~~eL~s~~~GE--sEr~iR~---~F~~A~e~~~~~~~PcILfIDEIDAg~~r~~~t~~~v~~q~ 165 (342)
+-+--+.-.+..+|. .+|.+++ +|.--. ++ +.-=-||+||||--+. ++
T Consensus 95 ~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGl-La--~AnRGIlYvDEvnlL~-----------d~- 159 (423)
T COG1239 95 EWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGL-LA--RANRGILYVDEVNLLD-----------DH- 159 (423)
T ss_pred ccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcc-hh--hccCCEEEEecccccc-----------HH-
Confidence 222222222223332 3444432 221100 01 1123589999997663 23
Q ss_pred HHHHHHhhcC-CCCccccCccccccCCCCCccEEEeeCCCC-CCccCCCCCCCCcceec---CCCHHHHHHHHHHHhh
Q 019334 166 VVGTLMNLSD-NPTRVSIGQDWRESDITNRIPIIFTGNDFS-TIYAPLIRDGRMEKFYW---QPNLEDILNIVHRMYE 238 (342)
Q Consensus 166 V~~tLl~llD-~p~~v~l~g~~~~~~~~~~V~VIatTNr~~-~LdpaLlRpGRfD~~i~---vP~~~~R~~Il~~~~~ 238 (342)
++..||+.+- |-+.|+..|.-- ..-.++.+|+|+|--+ .|=|.|+= ||.-.+- ..+.++|.+|...-+.
T Consensus 160 lvd~LLd~aaeG~n~vereGisi--~hpa~fvligTmNPEeGeLrpqLlD--Rfg~~v~~~~~~~~~~rv~Ii~r~~~ 233 (423)
T COG1239 160 LVDALLDVAAEGVNDVEREGISI--RHPARFLLIGTMNPEEGELRPQLLD--RFGLEVDTHYPLDLEERVEIIRRRLA 233 (423)
T ss_pred HHHHHHHHHHhCCceeeeCceee--ccCccEEEEeecCccccccchhhHh--hhcceeeccCCCCHHHHHHHHHHHHH
Confidence 3445555544 446777777321 1134677888888541 23333332 5554443 3588999999975443
No 256
>PRK08233 hypothetical protein; Provisional
Probab=97.83 E-value=8.5e-05 Score=64.35 Aligned_cols=33 Identities=21% Similarity=0.248 Sum_probs=27.7
Q ss_pred CeEEEeecCCCCCHHHHHHHHHHHhC-CceEEee
Q 019334 74 PLILGIWGGKGQGKSFQTELIFQAMG-IEPVIMS 106 (342)
Q Consensus 74 PlglgL~GPPG~GKTllaravA~~~g-~~~i~vs 106 (342)
+.+|+|.||||+|||++|+.++..++ ..++.++
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d 36 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLKNSKALYFD 36 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCCCCceEEEC
Confidence 57899999999999999999999996 4444443
No 257
>PRK07261 topology modulation protein; Provisional
Probab=97.82 E-value=4.9e-05 Score=67.46 Aligned_cols=43 Identities=16% Similarity=0.159 Sum_probs=34.1
Q ss_pred EEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccccccCCc
Q 019334 76 ILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEP 118 (342)
Q Consensus 76 glgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~~~GEs 118 (342)
-++|.||||+|||++|+.++..++++.+.++.-.....|...+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~~~~~~ 44 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPNWQERD 44 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEeccccccCC
Confidence 3789999999999999999999999988876544444454444
No 258
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=97.81 E-value=8.9e-06 Score=69.72 Aligned_cols=35 Identities=34% Similarity=0.475 Sum_probs=30.7
Q ss_pred eecCCCCCHHHHHHHHHHHhCCceEEeeccccccccc
Q 019334 79 IWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERA 115 (342)
Q Consensus 79 L~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~~~ 115 (342)
|.||||+|||++|+.+|+++| +++++.++|+...+
T Consensus 1 i~G~PgsGK~t~~~~la~~~~--~~~is~~~llr~~~ 35 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYG--LVHISVGDLLREEI 35 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHT--SEEEEHHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhcC--cceechHHHHHHHH
Confidence 579999999999999999998 68899998886543
No 259
>PRK03839 putative kinase; Provisional
Probab=97.80 E-value=2e-05 Score=69.30 Aligned_cols=31 Identities=32% Similarity=0.506 Sum_probs=27.4
Q ss_pred EEEeecCCCCCHHHHHHHHHHHhCCceEEee
Q 019334 76 ILGIWGGKGQGKSFQTELIFQAMGIEPVIMS 106 (342)
Q Consensus 76 glgL~GPPG~GKTllaravA~~~g~~~i~vs 106 (342)
.+.|.|+||||||++++++|+.+|++++.++
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 4788899999999999999999998886643
No 260
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=97.80 E-value=0.0001 Score=67.85 Aligned_cols=45 Identities=20% Similarity=0.114 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCeEEEeecCCCCCHHHHHHHHHHH
Q 019334 51 VFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQA 97 (342)
Q Consensus 51 ~f~d~l~~hi~K~~l~~~~~~k~PlglgL~GPPG~GKTllaravA~~ 97 (342)
.++.+.....+.+++. |+.+....+.|.|+.|||||+.++.++.+
T Consensus 31 ~~~~~wl~~~Var~~~--pg~k~d~~lvl~G~QG~GKStf~~~L~~~ 75 (198)
T PF05272_consen 31 YVFRKWLVGAVARAYE--PGCKNDTVLVLVGKQGIGKSTFFRKLGPE 75 (198)
T ss_pred HHHHHHHHHHHHHHhC--CCCcCceeeeEecCCcccHHHHHHHHhHH
Confidence 3445555666666664 78888899999999999999999999766
No 261
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=97.79 E-value=5e-05 Score=73.59 Aligned_cols=62 Identities=15% Similarity=0.160 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHhhcCCCCCeEEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccccccCCc
Q 019334 55 SLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEP 118 (342)
Q Consensus 55 ~l~~hi~K~~l~~~~~~k~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~~~GEs 118 (342)
+.+..++|.++...-.+.++..++|.|+||||||++++.+|.++|++++.++ ..+....|-+
T Consensus 114 ~~~~~~l~~~~~~~~~~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D--~~i~~~~G~~ 175 (309)
T PRK08154 114 ARVRDALSGMLGAGRRAARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELN--REIEREAGLS 175 (309)
T ss_pred HHHHHHHHHHHhhhhhccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHH--HHHHHHhCCC
Confidence 4577888888876666778889999999999999999999999999999443 3333334444
No 262
>PRK09862 putative ATP-dependent protease; Provisional
Probab=97.78 E-value=2.7e-05 Score=81.00 Aligned_cols=46 Identities=15% Similarity=0.048 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCeEEEeecCCCCCHHHHHHHHHHHh
Q 019334 51 VFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAM 98 (342)
Q Consensus 51 ~f~d~l~~hi~K~~l~~~~~~k~PlglgL~GPPG~GKTllaravA~~~ 98 (342)
.|.++.+.+.+++.+. .....-..++|.||||||||++++.++..+
T Consensus 189 d~~~v~Gq~~~~~al~--laa~~G~~llliG~~GsGKTtLak~L~gll 234 (506)
T PRK09862 189 DLSDVIGQEQGKRGLE--ITAAGGHNLLLIGPPGTGKTMLASRINGLL 234 (506)
T ss_pred CeEEEECcHHHHhhhh--eeccCCcEEEEECCCCCcHHHHHHHHhccC
Confidence 4444455555555554 222333579999999999999999998654
No 263
>PRK04040 adenylate kinase; Provisional
Probab=97.77 E-value=6.5e-05 Score=68.11 Aligned_cols=37 Identities=14% Similarity=0.216 Sum_probs=30.7
Q ss_pred CCeEEEeecCCCCCHHHHHHHHHHHh--CCceEEeeccccc
Q 019334 73 VPLILGIWGGKGQGKSFQTELIFQAM--GIEPVIMSAGELE 111 (342)
Q Consensus 73 ~PlglgL~GPPG~GKTllaravA~~~--g~~~i~vs~~eL~ 111 (342)
+|..++|+|+||||||++++.++.++ +..+ ++.++++
T Consensus 1 ~~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~--~~~g~~~ 39 (188)
T PRK04040 1 MMKVVVVTGVPGVGKTTVLNKALEKLKEDYKI--VNFGDVM 39 (188)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHhccCCeE--EecchHH
Confidence 47889999999999999999999999 5544 5556654
No 264
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=97.76 E-value=5.1e-05 Score=70.53 Aligned_cols=68 Identities=15% Similarity=0.185 Sum_probs=43.3
Q ss_pred EEeecCCCCCHHHHHHHHHHHh---CCceEEeecccc---cccccCCcHHHHHHHHHHHHHhhhhcCCceEEEeec
Q 019334 77 LGIWGGKGQGKSFQTELIFQAM---GIEPVIMSAGEL---ESERAGEPGKLIRERYRTASQVVQNQGKMSCLMIND 146 (342)
Q Consensus 77 lgL~GPPG~GKTllaravA~~~---g~~~i~vs~~eL---~s~~~GEsEr~iR~~F~~A~e~~~~~~~PcILfIDE 146 (342)
+.|.|+||+|||++|+++++.+ |..++.++..++ +..|....++.+|+....+.+.+- .+..++++|.
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~lr~~~~~~~~~~e~~~~~~~~~~i~~~l--~~~~~VI~D~ 75 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLIRESFPVWKEKYEEFIRDSTLYLIKTAL--KNKYSVIVDD 75 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHHHHHhHHhhHHhHHHHHHHHHHHHHHHH--hCCCeEEEec
Confidence 6789999999999999999887 567777776544 222333445666665544333221 1223455565
No 265
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=97.76 E-value=8.4e-05 Score=64.11 Aligned_cols=33 Identities=21% Similarity=0.363 Sum_probs=27.1
Q ss_pred EEeecCCCCCHHHHHHHHHHHhCCceEEeeccccc
Q 019334 77 LGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELE 111 (342)
Q Consensus 77 lgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~ 111 (342)
++|.||||||||++++.+++.++..++ +..++.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v--~~D~~~ 33 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFI--EGDDLH 33 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEE--eCcccc
Confidence 468899999999999999999996654 555553
No 266
>PRK14527 adenylate kinase; Provisional
Probab=97.76 E-value=1.8e-05 Score=70.58 Aligned_cols=41 Identities=24% Similarity=0.401 Sum_probs=34.8
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccccc
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESER 114 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~~ 114 (342)
+.|..+++.||||+|||++|+.+|+++|+ ..++.++++...
T Consensus 4 ~~~~~i~i~G~pGsGKsT~a~~La~~~~~--~~is~gd~~r~~ 44 (191)
T PRK14527 4 TKNKVVIFLGPPGAGKGTQAERLAQELGL--KKLSTGDILRDH 44 (191)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCC--CCCCccHHHHHH
Confidence 46788999999999999999999999985 567778887653
No 267
>PLN02674 adenylate kinase
Probab=97.75 E-value=4.2e-05 Score=72.70 Aligned_cols=41 Identities=22% Similarity=0.248 Sum_probs=35.0
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccccc
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESER 114 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~~ 114 (342)
+++..++|.||||+|||++|+.+|+++| +.++|.++|+...
T Consensus 29 ~~~~~i~l~G~PGsGKgT~a~~La~~~~--~~his~GdllR~~ 69 (244)
T PLN02674 29 KPDKRLILIGPPGSGKGTQSPIIKDEYC--LCHLATGDMLRAA 69 (244)
T ss_pred ccCceEEEECCCCCCHHHHHHHHHHHcC--CcEEchhHHHHHH
Confidence 4456678899999999999999999998 6788889888654
No 268
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.75 E-value=0.0016 Score=64.49 Aligned_cols=136 Identities=11% Similarity=0.085 Sum_probs=85.9
Q ss_pred CCCCeEEEeecCCCCCHHHHHHHHHHHhCCceEE----------------eeccccc--ccccCC--cHHHHHHHHHHHH
Q 019334 71 VKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVI----------------MSAGELE--SERAGE--PGKLIRERYRTAS 130 (342)
Q Consensus 71 ~k~PlglgL~GPPG~GKTllaravA~~~g~~~i~----------------vs~~eL~--s~~~GE--sEr~iR~~F~~A~ 130 (342)
-+.|-.++++||+|+||+++|+++|+.+-+.--. -+-+|++ .+..|. +-..||++-+.+.
T Consensus 21 ~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~I~id~iR~l~~~~~ 100 (325)
T PRK06871 21 GLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNKDIGVDQVREINEKVS 100 (325)
T ss_pred CCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccCCCCCHHHHHHHHHHHh
Confidence 4789999999999999999999999888652100 0012221 111121 3456777665554
Q ss_pred HhhhhcCCceEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCCccC
Q 019334 131 QVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAP 210 (342)
Q Consensus 131 e~~~~~~~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~~~Ldpa 210 (342)
... ..+.--|++||+.|..-. . -...||-.+. |+ ..++.+|.+|+.++.|.|.
T Consensus 101 ~~~-~~g~~KV~iI~~a~~m~~-----------~-AaNaLLKtLE-------------EP-p~~~~fiL~t~~~~~llpT 153 (325)
T PRK06871 101 QHA-QQGGNKVVYIQGAERLTE-----------A-AANALLKTLE-------------EP-RPNTYFLLQADLSAALLPT 153 (325)
T ss_pred hcc-ccCCceEEEEechhhhCH-----------H-HHHHHHHHhc-------------CC-CCCeEEEEEECChHhCchH
Confidence 322 246667999999998741 1 1224554444 33 5678888889999999998
Q ss_pred CCCCCCCcceecC-CCHHHHHHHHHH
Q 019334 211 LIRDGRMEKFYWQ-PNLEDILNIVHR 235 (342)
Q Consensus 211 LlRpGRfD~~i~v-P~~~~R~~Il~~ 235 (342)
++= |-=.+.+. |+.++-.+.|..
T Consensus 154 I~S--RC~~~~~~~~~~~~~~~~L~~ 177 (325)
T PRK06871 154 IYS--RCQTWLIHPPEEQQALDWLQA 177 (325)
T ss_pred HHh--hceEEeCCCCCHHHHHHHHHH
Confidence 654 54444443 667766666654
No 269
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.75 E-value=0.00024 Score=73.51 Aligned_cols=182 Identities=19% Similarity=0.290 Sum_probs=116.2
Q ss_pred HHHHHHHHHhhcCCCCCeEEEeecCCCCCHHHHHHHHHHHh---CCce--EEeecc--------------cccccccCC-
Q 019334 58 CHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAM---GIEP--VIMSAG--------------ELESERAGE- 117 (342)
Q Consensus 58 ~hi~K~~l~~~~~~k~PlglgL~GPPG~GKTllaravA~~~---g~~~--i~vs~~--------------eL~s~~~GE- 117 (342)
..++++|.....-.+.+..+.+.|-||+|||.+..-+-... +..+ +.++.- ++++.-.|.
T Consensus 159 ~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~~~~~q~~~s~~ 238 (529)
T KOG2227|consen 159 MDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIFSSLLQDLVSPG 238 (529)
T ss_pred HHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHHHHHHHHHhcCCc
Confidence 45677777766667889999999999999999887655333 3332 334432 222222333
Q ss_pred cHHHHHHHHHHHHHhhhhcCCceEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccE
Q 019334 118 PGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPI 197 (342)
Q Consensus 118 sEr~iR~~F~~A~e~~~~~~~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~V 197 (342)
.++..-+.|.+ +......|=+|.+||+|-++.+. |.|.=+|- .|..-. +.+...
T Consensus 239 ~~~~~~~~~~~---h~~q~k~~~llVlDEmD~L~tr~---------~~vLy~lF-------------ewp~lp-~sr~iL 292 (529)
T KOG2227|consen 239 TGMQHLEKFEK---HTKQSKFMLLLVLDEMDHLITRS---------QTVLYTLF-------------EWPKLP-NSRIIL 292 (529)
T ss_pred hhHHHHHHHHH---HHhcccceEEEEechhhHHhhcc---------cceeeeeh-------------hcccCC-cceeee
Confidence 33333344433 33212359999999999988431 12221222 366555 778889
Q ss_pred EEeeCCCCCCccCCCCCCCCcce------ecCC-CHHHHHHHHHHHhhcCCCC---HHHHHHHhhcCCCCccchHHHHH
Q 019334 198 IFTGNDFSTIYAPLIRDGRMEKF------YWQP-NLEDILNIVHRMYEKDGIT---KDEVGSIVKTFPNQALDFYGALR 266 (342)
Q Consensus 198 IatTNr~~~LdpaLlRpGRfD~~------i~vP-~~~~R~~Il~~~~~~~~~s---~~di~~lvd~f~~~~~df~gAlr 266 (342)
|+-+|-.|.=|-.|.|- +.|.. +|.| +.++..+||+.-+.....+ ...|+-++..-++.+=|.-.||+
T Consensus 293 iGiANslDlTdR~LprL-~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLd 370 (529)
T KOG2227|consen 293 IGIANSLDLTDRFLPRL-NLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALD 370 (529)
T ss_pred eeehhhhhHHHHHhhhh-hhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHH
Confidence 99999998888777774 44442 3446 8999999999888766543 24566666656666667766665
No 270
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.74 E-value=0.00059 Score=67.38 Aligned_cols=148 Identities=13% Similarity=0.078 Sum_probs=90.7
Q ss_pred CCCCCeEEEeecCCCCCHHHHHHHHHHHhCCc-eE---------------EeecccccccccCC------cHHHHHHHHH
Q 019334 70 NVKVPLILGIWGGKGQGKSFQTELIFQAMGIE-PV---------------IMSAGELESERAGE------PGKLIRERYR 127 (342)
Q Consensus 70 ~~k~PlglgL~GPPG~GKTllaravA~~~g~~-~i---------------~vs~~eL~s~~~GE------sEr~iR~~F~ 127 (342)
.-+.|-.++++||+|+||+.+|.++|+.+-+. .- .-+-+|+.- ...| +=..||++-+
T Consensus 20 ~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~-i~p~~~~~~I~idqiR~l~~ 98 (334)
T PRK07993 20 AGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYT-LTPEKGKSSLGVDAVREVTE 98 (334)
T ss_pred cCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEE-EecccccccCCHHHHHHHHH
Confidence 35889999999999999999999999888552 10 011122221 0111 2336777666
Q ss_pred HHHHhhhhcCCceEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCC
Q 019334 128 TASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTI 207 (342)
Q Consensus 128 ~A~e~~~~~~~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~~~L 207 (342)
.+.... ..+.--|++||+.|+.-. + -...||-.+. |+ ..++.+|.+|+.++.|
T Consensus 99 ~~~~~~-~~g~~kV~iI~~ae~m~~-----------~-AaNaLLKtLE-------------EP-p~~t~fiL~t~~~~~l 151 (334)
T PRK07993 99 KLYEHA-RLGGAKVVWLPDAALLTD-----------A-AANALLKTLE-------------EP-PENTWFFLACREPARL 151 (334)
T ss_pred HHhhcc-ccCCceEEEEcchHhhCH-----------H-HHHHHHHHhc-------------CC-CCCeEEEEEECChhhC
Confidence 554332 246678999999998731 1 1224555544 33 5678888888899999
Q ss_pred ccCCCCCCCCcceec-CCCHHHHHHHHHHHhhcCCCCHHHHHHH
Q 019334 208 YAPLIRDGRMEKFYW-QPNLEDILNIVHRMYEKDGITKDEVGSI 250 (342)
Q Consensus 208 dpaLlRpGRfD~~i~-vP~~~~R~~Il~~~~~~~~~s~~di~~l 250 (342)
.|.++= |--.+.+ .|+.++-.+-|.. ..+++.++...+
T Consensus 152 LpTIrS--RCq~~~~~~~~~~~~~~~L~~---~~~~~~~~a~~~ 190 (334)
T PRK07993 152 LATLRS--RCRLHYLAPPPEQYALTWLSR---EVTMSQDALLAA 190 (334)
T ss_pred hHHHHh--ccccccCCCCCHHHHHHHHHH---ccCCCHHHHHHH
Confidence 988764 4434333 3666666555532 224555544443
No 271
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.74 E-value=9.9e-05 Score=67.14 Aligned_cols=39 Identities=18% Similarity=0.216 Sum_probs=30.1
Q ss_pred CCCCCeEEEeecCCCCCHHHHHHHHHHH---hCCceEEeecc
Q 019334 70 NVKVPLILGIWGGKGQGKSFQTELIFQA---MGIEPVIMSAG 108 (342)
Q Consensus 70 ~~k~PlglgL~GPPG~GKTllaravA~~---~g~~~i~vs~~ 108 (342)
|+..-..++|+||||+|||++|..+|.+ .|-+.+-++..
T Consensus 19 Gi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 19 GFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 3334467999999999999999998863 36677777765
No 272
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=97.74 E-value=2.6e-05 Score=64.95 Aligned_cols=31 Identities=29% Similarity=0.427 Sum_probs=28.4
Q ss_pred EEEeecCCCCCHHHHHHHHHHHhCCceEEee
Q 019334 76 ILGIWGGKGQGKSFQTELIFQAMGIEPVIMS 106 (342)
Q Consensus 76 glgL~GPPG~GKTllaravA~~~g~~~i~vs 106 (342)
++.|.||||||||++|+.+|+++|++++..+
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 3689999999999999999999999988776
No 273
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.73 E-value=0.00017 Score=75.76 Aligned_cols=57 Identities=26% Similarity=0.372 Sum_probs=44.1
Q ss_pred HHHHHHHHHHH-----HHHHHHh--hcCCCCC-eEEEeecCCCCCHHHHHHHHHHHhCCceEEee
Q 019334 50 PVFMASLLCHI-----VKNYIAH--LLNVKVP-LILGIWGGKGQGKSFQTELIFQAMGIEPVIMS 106 (342)
Q Consensus 50 ~~f~d~l~~hi-----~K~~l~~--~~~~k~P-lglgL~GPPG~GKTllaravA~~~g~~~i~vs 106 (342)
|+=++-++.|- +|.||.+ ....+.+ ++++|.||+|||||+.++.+|+++|..++.=+
T Consensus 78 P~t~eeLAVHkkKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~ 142 (634)
T KOG1970|consen 78 PRTLEELAVHKKKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKELGYQLIEWS 142 (634)
T ss_pred cccHHHHhhhHHhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhhCceeeeec
Confidence 35567788775 5678873 2233333 78999999999999999999999999888766
No 274
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.72 E-value=0.00014 Score=74.37 Aligned_cols=77 Identities=19% Similarity=0.159 Sum_probs=49.8
Q ss_pred CCCCeEEEeecCCCCCHHHHHHHHHHHh---CCceEEeecccccccc------cCC--------cHHHHHHHHHHHHHhh
Q 019334 71 VKVPLILGIWGGKGQGKSFQTELIFQAM---GIEPVIMSAGELESER------AGE--------PGKLIRERYRTASQVV 133 (342)
Q Consensus 71 ~k~PlglgL~GPPG~GKTllaravA~~~---g~~~i~vs~~eL~s~~------~GE--------sEr~iR~~F~~A~e~~ 133 (342)
+..-..++|+||||+|||+++..+|... |-+.+.+++-|-.+.. .|. ++..+.++++..
T Consensus 77 i~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i---- 152 (446)
T PRK11823 77 LVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILATI---- 152 (446)
T ss_pred ccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHH----
Confidence 4444678999999999999999998765 6677888875433211 111 111222233222
Q ss_pred hhcCCceEEEeecccccCC
Q 019334 134 QNQGKMSCLMINDIDAGLG 152 (342)
Q Consensus 134 ~~~~~PcILfIDEIDAg~~ 152 (342)
+ ..+|.+|+||+|-+...
T Consensus 153 ~-~~~~~lVVIDSIq~l~~ 170 (446)
T PRK11823 153 E-EEKPDLVVIDSIQTMYS 170 (446)
T ss_pred H-hhCCCEEEEechhhhcc
Confidence 1 35799999999998753
No 275
>PRK13946 shikimate kinase; Provisional
Probab=97.72 E-value=7.8e-05 Score=66.52 Aligned_cols=45 Identities=16% Similarity=0.004 Sum_probs=34.7
Q ss_pred CCeEEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccccccCCcH
Q 019334 73 VPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPG 119 (342)
Q Consensus 73 ~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~~~GEsE 119 (342)
.+..++|.|+||||||++++.+|+.+|++|+-.+. +.....|.+.
T Consensus 9 ~~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D~--~~~~~~g~~~ 53 (184)
T PRK13946 9 GKRTVVLVGLMGAGKSTVGRRLATMLGLPFLDADT--EIERAARMTI 53 (184)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCeECcCH--HHHHHhCCCH
Confidence 34679999999999999999999999999876653 3333345443
No 276
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.71 E-value=4e-05 Score=71.88 Aligned_cols=42 Identities=24% Similarity=0.385 Sum_probs=35.5
Q ss_pred CCCCeEEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccccc
Q 019334 71 VKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESER 114 (342)
Q Consensus 71 ~k~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~~ 114 (342)
++.|.-+.|.||||+|||++|+.+|+.+| +.+++.++|+...
T Consensus 3 ~~~~mrIvl~G~PGsGK~T~a~~La~~~g--~~~is~gdllr~~ 44 (229)
T PTZ00088 3 LKGPLKIVLFGAPGVGKGTFAEILSKKEN--LKHINMGNILREE 44 (229)
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHhC--CcEEECChHHHHH
Confidence 45677788999999999999999999999 5677888888643
No 277
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=97.70 E-value=0.00026 Score=63.87 Aligned_cols=77 Identities=18% Similarity=0.096 Sum_probs=46.5
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHH-----HHhCCce--------------EEeecccccccccCCcHHHHHHHHHHHHHh
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIF-----QAMGIEP--------------VIMSAGELESERAGEPGKLIRERYRTASQV 132 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA-----~~~g~~~--------------i~vs~~eL~s~~~GEsEr~iR~~F~~A~e~ 132 (342)
.....++|.||.|+|||++.++++ ...|... ..+...+-...+.+.-...+++ +..+...
T Consensus 27 ~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~~~~~~i~~~dqi~~~~~~~d~i~~~~s~~~~e~~~-l~~i~~~ 105 (202)
T cd03243 27 GSGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVPAESASIPLVDRIFTRIGAEDSISDGRSTFMAELLE-LKEILSL 105 (202)
T ss_pred cCCeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCccccccccCCcCEEEEEecCcccccCCceeHHHHHHH-HHHHHHh
Confidence 344679999999999999999999 3445321 1122222222333333333333 3233322
Q ss_pred hhhcCCceEEEeecccccCC
Q 019334 133 VQNQGKMSCLMINDIDAGLG 152 (342)
Q Consensus 133 ~~~~~~PcILfIDEIDAg~~ 152 (342)
...|.++++||.-++..
T Consensus 106 ---~~~~~llllDEp~~gld 122 (202)
T cd03243 106 ---ATPRSLVLIDELGRGTS 122 (202)
T ss_pred ---ccCCeEEEEecCCCCCC
Confidence 35799999999988763
No 278
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.70 E-value=9.3e-05 Score=67.06 Aligned_cols=67 Identities=12% Similarity=0.205 Sum_probs=40.3
Q ss_pred EEEeecCCCCCHHHHHHHHHHHhCC----ceEEeec-ccccc---------cccCCcHHHHHHHHHHHHHhhhhcCCceE
Q 019334 76 ILGIWGGKGQGKSFQTELIFQAMGI----EPVIMSA-GELES---------ERAGEPGKLIRERYRTASQVVQNQGKMSC 141 (342)
Q Consensus 76 glgL~GPPG~GKTllaravA~~~g~----~~i~vs~-~eL~s---------~~~GEsEr~iR~~F~~A~e~~~~~~~PcI 141 (342)
.++|.||+|||||+++++++..+.. .++.+.- .|+.. ..+|..... |..+...+- +..|.+
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~~~----~~~~i~~aL-r~~pd~ 77 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESKRSLINQREVGLDTLS----FENALKAAL-RQDPDV 77 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccCccceeeecccCCCccC----HHHHHHHHh-cCCcCE
Confidence 4789999999999999999988753 2232222 12221 112332222 433332221 346999
Q ss_pred EEeecc
Q 019334 142 LMINDI 147 (342)
Q Consensus 142 LfIDEI 147 (342)
|++||+
T Consensus 78 ii~gEi 83 (198)
T cd01131 78 ILVGEM 83 (198)
T ss_pred EEEcCC
Confidence 999997
No 279
>PRK13695 putative NTPase; Provisional
Probab=97.70 E-value=0.00022 Score=62.62 Aligned_cols=26 Identities=31% Similarity=0.411 Sum_probs=21.9
Q ss_pred EEEeecCCCCCHHHHHHHHHHHh---CCc
Q 019334 76 ILGIWGGKGQGKSFQTELIFQAM---GIE 101 (342)
Q Consensus 76 glgL~GPPG~GKTllaravA~~~---g~~ 101 (342)
.++|.|+||||||++++.++.++ |..
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~~G~~ 30 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKEEGYK 30 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCe
Confidence 47889999999999999988765 554
No 280
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.70 E-value=3.5e-05 Score=67.55 Aligned_cols=35 Identities=31% Similarity=0.481 Sum_probs=29.8
Q ss_pred EEeecCCCCCHHHHHHHHHHHhCCceEEeeccccccc
Q 019334 77 LGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESE 113 (342)
Q Consensus 77 lgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~ 113 (342)
|+|.||||+|||++|+.+|+++|+ ..++.++++..
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~--~~i~~~~l~~~ 36 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGL--PHISTGDLLRE 36 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCC--eEEECcHHHHH
Confidence 689999999999999999999985 55677777754
No 281
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=97.69 E-value=8.8e-05 Score=64.57 Aligned_cols=36 Identities=36% Similarity=0.563 Sum_probs=29.3
Q ss_pred HHHHHHhhcCCCCCeEEEeecCCCCCHHHHHHHHHHH
Q 019334 61 VKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQA 97 (342)
Q Consensus 61 ~K~~l~~~~~~k~PlglgL~GPPG~GKTllaravA~~ 97 (342)
++.++. .++.+-|+.+-+|||||||||+.++.||+.
T Consensus 41 i~~~l~-~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ 76 (127)
T PF06309_consen 41 IKGHLA-NPNPRKPLVLSFHGWTGTGKNFVSRLIAEH 76 (127)
T ss_pred HHHHHc-CCCCCCCEEEEeecCCCCcHHHHHHHHHHH
Confidence 344443 346778899999999999999999999987
No 282
>PRK14526 adenylate kinase; Provisional
Probab=97.69 E-value=4.2e-05 Score=70.77 Aligned_cols=35 Identities=26% Similarity=0.368 Sum_probs=30.6
Q ss_pred EEeecCCCCCHHHHHHHHHHHhCCceEEeeccccccc
Q 019334 77 LGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESE 113 (342)
Q Consensus 77 lgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~ 113 (342)
++|.||||||||++|+.+|+.++ +.++|.++++..
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~~--~~~is~G~llr~ 37 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNELN--YYHISTGDLFRE 37 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC--CceeecChHHHH
Confidence 67899999999999999999998 556778888764
No 283
>PRK13949 shikimate kinase; Provisional
Probab=97.69 E-value=8.5e-05 Score=66.02 Aligned_cols=31 Identities=16% Similarity=0.245 Sum_probs=28.3
Q ss_pred EEEeecCCCCCHHHHHHHHHHHhCCceEEee
Q 019334 76 ILGIWGGKGQGKSFQTELIFQAMGIEPVIMS 106 (342)
Q Consensus 76 glgL~GPPG~GKTllaravA~~~g~~~i~vs 106 (342)
-++|.||||+|||++++.+|+.+|++++..+
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~~~~id~D 33 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELGLSFIDLD 33 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence 4788999999999999999999999888766
No 284
>PRK14530 adenylate kinase; Provisional
Probab=97.69 E-value=5.3e-05 Score=68.96 Aligned_cols=38 Identities=21% Similarity=0.387 Sum_probs=30.4
Q ss_pred EEEeecCCCCCHHHHHHHHHHHhCCceEEeeccccccccc
Q 019334 76 ILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERA 115 (342)
Q Consensus 76 glgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~~~ 115 (342)
.++|.||||+|||++|+.+|+.+|++ .++.++++....
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~~--~i~~g~~lr~~~ 42 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGVE--HVTTGDALRANK 42 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCe--EEeccHHHHHhc
Confidence 36778999999999999999999955 556677765444
No 285
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=97.68 E-value=0.00027 Score=65.57 Aligned_cols=153 Identities=17% Similarity=0.139 Sum_probs=77.9
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHH--hCC-----ceEEeeccc----ccc---cccC---------CcHHHHHHHHHH
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQA--MGI-----EPVIMSAGE----LES---ERAG---------EPGKLIRERYRT 128 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~--~g~-----~~i~vs~~e----L~s---~~~G---------EsEr~iR~~F~~ 128 (342)
+.+..|+|||++|+|||.+|+.++.. ..- -++.++... ++. ...| .....+.+.+.+
T Consensus 17 ~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~ 96 (287)
T PF00931_consen 17 NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSISDPKDIEELQDQLRE 96 (287)
T ss_dssp TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-STSSCCSSHHHHHHHHHH
T ss_pred CCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccchh
Confidence 56789999999999999999999977 322 233333311 111 0111 112222223322
Q ss_pred HHHhhhhcCCceEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCCc
Q 019334 129 ASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIY 208 (342)
Q Consensus 129 A~e~~~~~~~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~~~Ld 208 (342)
. . ++++|+|+||+++... .+ ..+... +... ..+..||+||...+..
T Consensus 97 ~---L--~~~~~LlVlDdv~~~~-------------~~-~~l~~~------------~~~~--~~~~kilvTTR~~~v~- 142 (287)
T PF00931_consen 97 L---L--KDKRCLLVLDDVWDEE-------------DL-EELREP------------LPSF--SSGSKILVTTRDRSVA- 142 (287)
T ss_dssp H---H--CCTSEEEEEEEE-SHH-------------HH--------------------HCH--HSS-EEEEEESCGGGG-
T ss_pred h---h--ccccceeeeeeecccc-------------cc-cccccc------------cccc--cccccccccccccccc-
Confidence 2 2 4569999999987532 11 111111 1001 2467889999765422
Q ss_pred cCCCCCCCCcceecC--CCHHHHHHHHHHHhhcCC-----CCHHHHHHHhhcCCCCccch
Q 019334 209 APLIRDGRMEKFYWQ--PNLEDILNIVHRMYEKDG-----ITKDEVGSIVKTFPNQALDF 261 (342)
Q Consensus 209 paLlRpGRfD~~i~v--P~~~~R~~Il~~~~~~~~-----~s~~di~~lvd~f~~~~~df 261 (342)
..+- .-+..|.+ -+.++-.++|+....... -..+...+++..+.|-|+-.
T Consensus 143 ~~~~---~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal 199 (287)
T PF00931_consen 143 GSLG---GTDKVIELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLAL 199 (287)
T ss_dssp TTHH---SCEEEEECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHH
T ss_pred cccc---ccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 1121 11445555 377777888876643222 12344566777777766433
No 286
>PRK13948 shikimate kinase; Provisional
Probab=97.68 E-value=0.00013 Score=66.32 Aligned_cols=44 Identities=16% Similarity=0.073 Sum_probs=35.9
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccccccCC
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGE 117 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~~~GE 117 (342)
++|..+.|.|++|||||++++.+|+.+|.+||-.+ .+.....|.
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D--~~ie~~~g~ 51 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTD--RYIERVTGK 51 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECC--HHHHHHHhC
Confidence 56788999999999999999999999999998555 444445554
No 287
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.67 E-value=9e-05 Score=69.52 Aligned_cols=74 Identities=18% Similarity=0.231 Sum_probs=45.6
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHhCCceEEeeccc----------ccccccCCcHHHHHHHHHHHHHhhhhcCCceE
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGE----------LESERAGEPGKLIRERYRTASQVVQNQGKMSC 141 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~e----------L~s~~~GEsEr~iR~~F~~A~e~~~~~~~PcI 141 (342)
+.|..++|||+||+|||++|+.++.+ ..++..+.+. +.......+-..+-+.+..+... .....+
T Consensus 10 ~~~~~~liyG~~G~GKtt~a~~~~~~--~~~~~~d~~~~~l~g~~~~~v~~~d~~~~~~~~~d~l~~~~~~---~~~ydt 84 (220)
T TIGR01618 10 RIPNMYLIYGKPGTGKTSTIKYLPGK--TLVLSFDMSSKVLIGDENVDIADHDDMPPIQAMVEFYVMQNIQ---AVKYDN 84 (220)
T ss_pred CCCcEEEEECCCCCCHHHHHHhcCCC--CEEEeccccchhccCCCCCceeecCCCCCHHHHHHHHHHHHhc---cccCCE
Confidence 44777999999999999999998632 3333333321 11112233444555555433221 245789
Q ss_pred EEeeccccc
Q 019334 142 LMINDIDAG 150 (342)
Q Consensus 142 LfIDEIDAg 150 (342)
|+||.|+..
T Consensus 85 VVIDsI~~l 93 (220)
T TIGR01618 85 IVIDNISAL 93 (220)
T ss_pred EEEecHHHH
Confidence 999999984
No 288
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=97.67 E-value=0.00013 Score=63.29 Aligned_cols=35 Identities=17% Similarity=0.276 Sum_probs=29.8
Q ss_pred EEeecCCCCCHHHHHHHHHHHh---CCceEEeeccccc
Q 019334 77 LGIWGGKGQGKSFQTELIFQAM---GIEPVIMSAGELE 111 (342)
Q Consensus 77 lgL~GPPG~GKTllaravA~~~---g~~~i~vs~~eL~ 111 (342)
+.|.|+||+|||++|+.++..+ |.+.+.+++.++-
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r 39 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVR 39 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHH
Confidence 6789999999999999999998 7777777765554
No 289
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.67 E-value=4.4e-05 Score=66.13 Aligned_cols=35 Identities=29% Similarity=0.266 Sum_probs=25.2
Q ss_pred EEeecCCCCCHHHHHHHHHHHhCCceEEeecccccc
Q 019334 77 LGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELES 112 (342)
Q Consensus 77 lgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s 112 (342)
|.|.|+||||||++++++++. |.+++.=.+-++..
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-g~~~v~E~ar~~~~ 36 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-GYPVVPEYAREIIE 36 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-T-EEE--TTHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc-CCeEEeecHHHHHH
Confidence 678999999999999999999 98887555555554
No 290
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=97.66 E-value=3.1e-05 Score=70.20 Aligned_cols=35 Identities=31% Similarity=0.459 Sum_probs=29.8
Q ss_pred EEeecCCCCCHHHHHHHHHHHhCCceEEeeccccccc
Q 019334 77 LGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESE 113 (342)
Q Consensus 77 lgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~ 113 (342)
++|.||||+|||++|+.+|+++|+ .+++.++|+..
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~--~~is~gdllr~ 36 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGL--PHISTGDLLRA 36 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCC--CeeehhHHHHH
Confidence 678999999999999999999984 56677777754
No 291
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.66 E-value=0.00032 Score=63.23 Aligned_cols=77 Identities=17% Similarity=0.181 Sum_probs=47.4
Q ss_pred CCCCeEEEeecCCCCCHHHHHHHHHHHhCCceEEeecc------------------------cc-cccccCCcHHHHHHH
Q 019334 71 VKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAG------------------------EL-ESERAGEPGKLIRER 125 (342)
Q Consensus 71 ~k~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~------------------------eL-~s~~~GEsEr~iR~~ 125 (342)
++....++|.||.|||||++.++++...|-. .+.+. +. .++..++--.--+++
T Consensus 18 i~~G~~~~l~G~nG~GKSTLl~~il~~~G~v--~~~~~~~~~~~~~~~~~~q~~~l~~~~L~~~~~~~~~~~LSgGq~qr 95 (176)
T cd03238 18 IPLNVLVVVTGVSGSGKSTLVNEGLYASGKA--RLISFLPKFSRNKLIFIDQLQFLIDVGLGYLTLGQKLSTLSGGELQR 95 (176)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhhcCCcE--EECCcccccccccEEEEhHHHHHHHcCCCccccCCCcCcCCHHHHHH
Confidence 4455789999999999999999997543421 11111 00 111111111122556
Q ss_pred HHHHHHhhhhcCC--ceEEEeecccccCC
Q 019334 126 YRTASQVVQNQGK--MSCLMINDIDAGLG 152 (342)
Q Consensus 126 F~~A~e~~~~~~~--PcILfIDEIDAg~~ 152 (342)
..-|+..+ .. |.+|++||--+++.
T Consensus 96 l~laral~---~~~~p~llLlDEPt~~LD 121 (176)
T cd03238 96 VKLASELF---SEPPGTLFILDEPSTGLH 121 (176)
T ss_pred HHHHHHHh---hCCCCCEEEEeCCcccCC
Confidence 66666665 36 99999999988773
No 292
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.66 E-value=0.001 Score=65.44 Aligned_cols=198 Identities=16% Similarity=0.165 Sum_probs=101.7
Q ss_pred hcCCCCCeEEEeecCCCCCHHHHHHHHHHHhC---------CceEEeeccc------cccc---ccCCc---HHHHHHHH
Q 019334 68 LLNVKVPLILGIWGGKGQGKSFQTELIFQAMG---------IEPVIMSAGE------LESE---RAGEP---GKLIRERY 126 (342)
Q Consensus 68 ~~~~k~PlglgL~GPPG~GKTllaravA~~~g---------~~~i~vs~~e------L~s~---~~GEs---Er~iR~~F 126 (342)
.|....+..++|+|++|.|||++++..+.... +|++.|.++. |++. ..|.| ...+.+..
T Consensus 55 ~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~ 134 (302)
T PF05621_consen 55 YPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRDRVAKLE 134 (302)
T ss_pred CCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCCCCCHHHHH
Confidence 34445557899999999999999999886543 3666776632 1110 01111 11112222
Q ss_pred HHHHHhhhhcCCceEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCC---
Q 019334 127 RTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGND--- 203 (342)
Q Consensus 127 ~~A~e~~~~~~~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr--- 203 (342)
..+....+ .-.+-+|+||||..++.... ...+.+...|=.+.+ .-++|||+.+.+
T Consensus 135 ~~~~~llr-~~~vrmLIIDE~H~lLaGs~-----~~qr~~Ln~LK~L~N----------------eL~ipiV~vGt~~A~ 192 (302)
T PF05621_consen 135 QQVLRLLR-RLGVRMLIIDEFHNLLAGSY-----RKQREFLNALKFLGN----------------ELQIPIVGVGTREAY 192 (302)
T ss_pred HHHHHHHH-HcCCcEEEeechHHHhcccH-----HHHHHHHHHHHHHhh----------------ccCCCeEEeccHHHH
Confidence 33333333 45689999999998652111 112333333333322 235777776532
Q ss_pred -CCCCccCCCCCCCCccee---cCCCHHHHHHHHHHHhh------cCCCCHHHHHHHhhcCCCCccchHHHHHHHHHHHH
Q 019334 204 -FSTIYAPLIRDGRMEKFY---WQPNLEDILNIVHRMYE------KDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRS 273 (342)
Q Consensus 204 -~~~LdpaLlRpGRfD~~i---~vP~~~~R~~Il~~~~~------~~~~s~~di~~lvd~f~~~~~df~gAlrs~~~~e~ 273 (342)
.=.-||-|-+ ||+.+. |-+|.+-+. .|...-+ ..+++..++.+.+=.-++-.++-...+-......+
T Consensus 193 ~al~~D~QLa~--RF~~~~Lp~W~~d~ef~~-LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~~ll~~aA~~A 269 (302)
T PF05621_consen 193 RALRTDPQLAS--RFEPFELPRWELDEEFRR-LLASFERALPLRKPSNLASPELARRIHERSEGLIGELSRLLNAAAIAA 269 (302)
T ss_pred HHhccCHHHHh--ccCCccCCCCCCCcHHHH-HHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHHHHHHHHHHHH
Confidence 1223445555 888754 556776554 3433322 22355666655553333333322222222222222
Q ss_pred HHHHHHHcCCcchhhhhhhcccC
Q 019334 274 ISKWIDDIGGVENLGNKLLKRRK 296 (342)
Q Consensus 274 ir~w~~~~~g~~~~~~~l~~~~~ 296 (342)
| .. |.|.|..+.++.-.
T Consensus 270 I-----~s-G~E~It~~~l~~~~ 286 (302)
T PF05621_consen 270 I-----RS-GEERITREILDKID 286 (302)
T ss_pred H-----hc-CCceecHHHHhhCC
Confidence 2 23 77777777776533
No 293
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=97.66 E-value=7.4e-05 Score=82.27 Aligned_cols=130 Identities=12% Similarity=0.103 Sum_probs=69.1
Q ss_pred EEEeecCCCCCHHHHHHHHHHHhC-------CceEEeecccccc-cccCCcHHHHHHHHHHHHHhhhhcCCceEEEeecc
Q 019334 76 ILGIWGGKGQGKSFQTELIFQAMG-------IEPVIMSAGELES-ERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDI 147 (342)
Q Consensus 76 glgL~GPPG~GKTllaravA~~~g-------~~~i~vs~~eL~s-~~~GEsEr~iR~~F~~A~e~~~~~~~PcILfIDEI 147 (342)
-|||+|.||||||.+|+++++-.. .++..+....... .-...++.. .++..+. ...--+++||||
T Consensus 494 hVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~vgLTa~~~~~d~~tG~~~-----le~GaLv--lAdgGtL~IDEi 566 (915)
T PTZ00111 494 NVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSVGLTASIKFNESDNGRAM-----IQPGAVV--LANGGVCCIDEL 566 (915)
T ss_pred eEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCccccccchhhhcccccCccc-----ccCCcEE--EcCCCeEEecch
Confidence 699999999999999999997532 1222221111110 000000100 0111111 111348899999
Q ss_pred cccCCCCCCCcccchhHHHHHHHHhhcCCCCc-cccCccccccCCCCCccEEEeeCCCC-------------CCccCCCC
Q 019334 148 DAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTR-VSIGQDWRESDITNRIPIIFTGNDFS-------------TIYAPLIR 213 (342)
Q Consensus 148 DAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~-v~l~g~~~~~~~~~~V~VIatTNr~~-------------~LdpaLlR 213 (342)
|+.-. .....|++.|..-+. +.-.|.- .....++-||||+|-.. .|+|+|+=
T Consensus 567 dkms~------------~~Q~aLlEaMEqqtIsI~KaGi~--~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLS 632 (915)
T PTZ00111 567 DKCHN------------ESRLSLYEVMEQQTVTIAKAGIV--ATLKAETAILASCNPINSRYNKNKAVIENINISPSLFT 632 (915)
T ss_pred hhCCH------------HHHHHHHHHHhCCEEEEecCCcc--eecCCCeEEEEEcCCcccccCcccCcccccCCChHHhh
Confidence 99742 122345555542110 1111211 11246788999999742 46788887
Q ss_pred CCCCcceecC---CCHHH
Q 019334 214 DGRMEKFYWQ---PNLED 228 (342)
Q Consensus 214 pGRfD~~i~v---P~~~~ 228 (342)
|||-++.+ |+.+.
T Consensus 633 --RFDLIf~l~D~~d~~~ 648 (915)
T PTZ00111 633 --RFDLIYLVLDHIDQDT 648 (915)
T ss_pred --hhcEEEEecCCCChHH
Confidence 99998764 66543
No 294
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.63 E-value=8.8e-05 Score=71.33 Aligned_cols=27 Identities=15% Similarity=-0.033 Sum_probs=24.0
Q ss_pred CeEEEeecCCCCCHHHHHHHHHHHhCC
Q 019334 74 PLILGIWGGKGQGKSFQTELIFQAMGI 100 (342)
Q Consensus 74 PlglgL~GPPG~GKTllaravA~~~g~ 100 (342)
...++|.||||||||++.++++....-
T Consensus 111 ~~~~~i~g~~g~GKttl~~~l~~~~~~ 137 (270)
T TIGR02858 111 VLNTLIISPPQCGKTTLLRDLARILST 137 (270)
T ss_pred eeEEEEEcCCCCCHHHHHHHHhCccCC
Confidence 368999999999999999999988753
No 295
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=97.63 E-value=2.1e-05 Score=70.85 Aligned_cols=72 Identities=19% Similarity=0.243 Sum_probs=43.3
Q ss_pred EEeecCCCCCHHHHHHHHHHHhCCceEEeec-cccccccc-CCcHHHHHHHHHHHHHhhhhcCCceEEEeeccccc
Q 019334 77 LGIWGGKGQGKSFQTELIFQAMGIEPVIMSA-GELESERA-GEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAG 150 (342)
Q Consensus 77 lgL~GPPG~GKTllaravA~~~g~~~i~vs~-~eL~s~~~-GEsEr~iR~~F~~A~e~~~~~~~PcILfIDEIDAg 150 (342)
+.|+|+||||||++.+.++... ..+...+. -++...|. +......+... .+............++|||+=..
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-s~~~~~~~~~~~~~liiDE~~~~ 74 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLKDR-LVVTVISPTIELYTEWLPDPPSKSVRTVD-SFLKALVKPKSYDTLIIDEAQLL 74 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHHhc-cccccccccceeccccccccCCccccEEe-EhhhcccccCcCCEEEEeccccC
Confidence 4689999999999999999997 33333333 56666665 33333333222 22111110113679999998654
No 296
>PRK00279 adk adenylate kinase; Reviewed
Probab=97.63 E-value=4.9e-05 Score=69.17 Aligned_cols=36 Identities=28% Similarity=0.387 Sum_probs=30.9
Q ss_pred EEEeecCCCCCHHHHHHHHHHHhCCceEEeeccccccc
Q 019334 76 ILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESE 113 (342)
Q Consensus 76 glgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~ 113 (342)
.++|+||||+|||++|+.+|+++| +.+++.++|+.+
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~--~~~is~~dl~r~ 37 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYG--IPHISTGDMLRA 37 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC--CcEEECCccHHH
Confidence 478999999999999999999999 566677777754
No 297
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=97.62 E-value=0.00014 Score=79.94 Aligned_cols=148 Identities=21% Similarity=0.285 Sum_probs=95.9
Q ss_pred EEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccccc-----cCC--cHHHHHHHH--HHHHHhhhhcCCce-EEEee
Q 019334 76 ILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESER-----AGE--PGKLIRERY--RTASQVVQNQGKMS-CLMIN 145 (342)
Q Consensus 76 glgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~~-----~GE--sEr~iR~~F--~~A~e~~~~~~~Pc-ILfID 145 (342)
.+++.||||.|||+.+.++|.++|..++..++++.=|++ +|+ +-..|-.-| -.++.. ...+. ||++|
T Consensus 359 ~~l~~G~pGigKT~~~h~~~k~~g~~v~E~Nas~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~---~~~~~~vil~d 435 (871)
T KOG1968|consen 359 ALLLSGPPGIGKTTAAHKAAKELGFKVVEKNASDVRSKKELLNKLGNATSSHSIKGSKKKKGNRQS---LNSDHFLILMD 435 (871)
T ss_pred HHHhcCCCCCCchhhHhhhhhhcccceeecCccccccccHHHhhhhccccccchhhhhcccccccc---cccceeEEEEe
Confidence 478999999999999999999999999999998665542 222 111222222 011111 12344 99999
Q ss_pred cccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCCcc-CCCCCCCCcceecCC
Q 019334 146 DIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYA-PLIRDGRMEKFYWQP 224 (342)
Q Consensus 146 EIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~~~Ldp-aLlRpGRfD~~i~vP 224 (342)
|+|...+ -+ |-.++.|-.++. ....|||.|.|+.+-... +|-|.+ +|-.|--|
T Consensus 436 evD~~~~-~d--------Rg~v~~l~~l~~----------------ks~~Piv~~cndr~~p~sr~~~~~~-~~l~f~kP 489 (871)
T KOG1968|consen 436 EVDGMFG-ED--------RGGVSKLSSLCK----------------KSSRPLVCTCNDRNLPKSRALSRAC-SDLRFSKP 489 (871)
T ss_pred ccccccc-hh--------hhhHHHHHHHHH----------------hccCCeEEEecCCCCccccchhhhc-ceeeecCC
Confidence 9999765 11 112222322222 356899999999876666 577766 66555569
Q ss_pred CHHHHHHHHHHHhhcCC--CCHHHHHHHhh
Q 019334 225 NLEDILNIVHRMYEKDG--ITKDEVGSIVK 252 (342)
Q Consensus 225 ~~~~R~~Il~~~~~~~~--~s~~di~~lvd 252 (342)
+.+.+..=+..++..+. ++...++.++.
T Consensus 490 ~~~~i~~ri~si~~se~~ki~~~~l~~~s~ 519 (871)
T KOG1968|consen 490 SSELIRSRIMSICKSEGIKISDDVLEEISK 519 (871)
T ss_pred cHHHHHhhhhhhhcccceecCcHHHHHHHH
Confidence 88887776665555554 67777777764
No 298
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.62 E-value=0.00049 Score=67.99 Aligned_cols=74 Identities=15% Similarity=0.259 Sum_probs=47.7
Q ss_pred eEEEeecCCCCCHHHHHHHHHHH---hCCceEEeecccccc----------------cccCCcHHHHHHHHHHHHHhhhh
Q 019334 75 LILGIWGGKGQGKSFQTELIFQA---MGIEPVIMSAGELES----------------ERAGEPGKLIRERYRTASQVVQN 135 (342)
Q Consensus 75 lglgL~GPPG~GKTllaravA~~---~g~~~i~vs~~eL~s----------------~~~GEsEr~iR~~F~~A~e~~~~ 135 (342)
.++.|+||||||||++|-.++.+ .|-..+.++..+-.+ ...-..|. .+..+...++
T Consensus 56 ~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq----~l~~~~~li~- 130 (321)
T TIGR02012 56 RIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQ----ALEIAETLVR- 130 (321)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHH----HHHHHHHHhh-
Confidence 57899999999999998766543 355666665543222 11112222 3333333333
Q ss_pred cCCceEEEeecccccCCC
Q 019334 136 QGKMSCLMINDIDAGLGR 153 (342)
Q Consensus 136 ~~~PcILfIDEIDAg~~r 153 (342)
++++.+|+||=|-+..++
T Consensus 131 ~~~~~lIVIDSv~al~~~ 148 (321)
T TIGR02012 131 SGAVDIIVVDSVAALVPK 148 (321)
T ss_pred ccCCcEEEEcchhhhccc
Confidence 678999999999998865
No 299
>PRK00625 shikimate kinase; Provisional
Probab=97.61 E-value=7.1e-05 Score=67.26 Aligned_cols=39 Identities=10% Similarity=-0.008 Sum_probs=31.3
Q ss_pred EEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccccccC
Q 019334 76 ILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAG 116 (342)
Q Consensus 76 glgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~~~G 116 (342)
.+.|.|+||||||++++.+|+++|++++.++ +++....|
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D--~~I~~~~g 40 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTD--DLIVSNYH 40 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhh--HHHHHHhC
Confidence 3788999999999999999999998887765 44443333
No 300
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=97.61 E-value=0.0003 Score=74.13 Aligned_cols=94 Identities=15% Similarity=0.090 Sum_probs=64.5
Q ss_pred hcccccccHHHHHHHHHHHHHHHHHhhcCCCCCeEEEeecCCCCCHHHHHHHHHHHhCC----ceEEeecccccccccCC
Q 019334 42 LQGDYYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGI----EPVIMSAGELESERAGE 117 (342)
Q Consensus 42 ~~~~~y~~~~f~d~l~~hi~K~~l~~~~~~k~PlglgL~GPPG~GKTllaravA~~~g~----~~i~vs~~eL~s~~~GE 117 (342)
+..+.-+|+-|+-.=...|+..+.. +..+.|..+.|.|+||||||++++++|+.++. +++.+++..+-....||
T Consensus 362 l~~G~~pP~~f~rpeV~~iL~~~~~--~r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D~vr~~l~ge 439 (568)
T PRK05537 362 LREGLEIPEWFSFPEVVAELRRTYP--PRHKQGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVVRKHLSSE 439 (568)
T ss_pred HHCCCCCChhhcHHHHHHHHHHHhc--cccCCCeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCcHHHHhccCC
Confidence 4567888888887766667777776 33456788899999999999999999999985 45666666554444554
Q ss_pred -------cHHHHHHHHHHHHHhhhhcCC
Q 019334 118 -------PGKLIRERYRTASQVVQNQGK 138 (342)
Q Consensus 118 -------sEr~iR~~F~~A~e~~~~~~~ 138 (342)
.+..++.+-..|.+.++ .|.
T Consensus 440 ~~f~~~er~~~~~~l~~~a~~v~~-~Gg 466 (568)
T PRK05537 440 LGFSKEDRDLNILRIGFVASEITK-NGG 466 (568)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHh-CCC
Confidence 23344433335555554 453
No 301
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.61 E-value=0.00018 Score=73.36 Aligned_cols=74 Identities=20% Similarity=0.209 Sum_probs=48.5
Q ss_pred EEeecCCCCCHHHHHHHHHHHhCCc------eEEeec--------------ccccccccCCcHHH-HH---HHHHHHHHh
Q 019334 77 LGIWGGKGQGKSFQTELIFQAMGIE------PVIMSA--------------GELESERAGEPGKL-IR---ERYRTASQV 132 (342)
Q Consensus 77 lgL~GPPG~GKTllaravA~~~g~~------~i~vs~--------------~eL~s~~~GEsEr~-iR---~~F~~A~e~ 132 (342)
++|.||||||||++++++++....+ ++.+.. ++++..-.++|... ++ .+.+.|...
T Consensus 171 ~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e~Ae~~ 250 (415)
T TIGR00767 171 GLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIEKAKRL 250 (415)
T ss_pred EEEECCCCCChhHHHHHHHHhhcccCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999985433 333332 22334445655544 22 233333333
Q ss_pred hhhcCCceEEEeecccccC
Q 019334 133 VQNQGKMSCLMINDIDAGL 151 (342)
Q Consensus 133 ~~~~~~PcILfIDEIDAg~ 151 (342)
. ..|+-.|||||||...+
T Consensus 251 ~-~~GkdVVLlIDEitR~a 268 (415)
T TIGR00767 251 V-EHKKDVVILLDSITRLA 268 (415)
T ss_pred H-HcCCCeEEEEEChhHHH
Confidence 2 46899999999999754
No 302
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.60 E-value=0.00066 Score=67.22 Aligned_cols=77 Identities=16% Similarity=0.277 Sum_probs=50.0
Q ss_pred CCC--eEEEeecCCCCCHHHHHHHHHH---HhCCceEEeecccccc----------------cccCCcHHHHHHHHHHHH
Q 019334 72 KVP--LILGIWGGKGQGKSFQTELIFQ---AMGIEPVIMSAGELES----------------ERAGEPGKLIRERYRTAS 130 (342)
Q Consensus 72 k~P--lglgL~GPPG~GKTllaravA~---~~g~~~i~vs~~eL~s----------------~~~GEsEr~iR~~F~~A~ 130 (342)
..| .++.|+||||||||++|-.++. +.|-..+.++..+-++ ...-..|. .+..+.
T Consensus 51 Glp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq----~l~i~~ 126 (325)
T cd00983 51 GYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQ----ALEIAD 126 (325)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHH----HHHHHH
Confidence 445 5788999999999999987764 3466677666633221 11112232 233333
Q ss_pred HhhhhcCCceEEEeecccccCCC
Q 019334 131 QVVQNQGKMSCLMINDIDAGLGR 153 (342)
Q Consensus 131 e~~~~~~~PcILfIDEIDAg~~r 153 (342)
..++ ++.+++|+||=|-+..++
T Consensus 127 ~li~-s~~~~lIVIDSvaal~~~ 148 (325)
T cd00983 127 SLVR-SGAVDLIVVDSVAALVPK 148 (325)
T ss_pred HHHh-ccCCCEEEEcchHhhccc
Confidence 3333 678999999999998875
No 303
>PRK02496 adk adenylate kinase; Provisional
Probab=97.60 E-value=6.4e-05 Score=66.32 Aligned_cols=35 Identities=26% Similarity=0.350 Sum_probs=29.3
Q ss_pred EEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccc
Q 019334 76 ILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELES 112 (342)
Q Consensus 76 glgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s 112 (342)
-++|.||||||||++|+.+|+.+|+ ..++.++++.
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~~--~~i~~~~~~~ 37 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLHI--PHISTGDILR 37 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC--cEEEhHHHHH
Confidence 4788999999999999999999985 4566666664
No 304
>KOG3079 consensus Uridylate kinase/adenylate kinase [Nucleotide transport and metabolism]
Probab=97.60 E-value=0.00011 Score=67.86 Aligned_cols=44 Identities=34% Similarity=0.481 Sum_probs=39.7
Q ss_pred cCCCCCeEEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccccc
Q 019334 69 LNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESER 114 (342)
Q Consensus 69 ~~~k~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~~ 114 (342)
+..+-|.++.+-|+|||||-++|+-++...| |.++|+|+|+..-
T Consensus 3 ~~~~~~~IifVlGGPGsgKgTqC~kiv~ky~--ftHlSaGdLLR~E 46 (195)
T KOG3079|consen 3 PKLDKPPIIFVLGGPGSGKGTQCEKIVEKYG--FTHLSAGDLLRAE 46 (195)
T ss_pred CcccCCCEEEEEcCCCCCcchHHHHHHHHcC--ceeecHHHHHHHH
Confidence 3456788999999999999999999999999 9999999999753
No 305
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=97.59 E-value=0.00018 Score=62.56 Aligned_cols=40 Identities=23% Similarity=0.182 Sum_probs=30.9
Q ss_pred EEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccccccCC
Q 019334 76 ILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGE 117 (342)
Q Consensus 76 glgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~~~GE 117 (342)
.++|.|+||||||++++.+|.++|++++.. .++.....|.
T Consensus 4 ~i~~~G~~GsGKst~~~~la~~lg~~~~d~--D~~~~~~~g~ 43 (171)
T PRK03731 4 PLFLVGARGCGKTTVGMALAQALGYRFVDT--DQWLQSTSNM 43 (171)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEc--cHHHHHHhCC
Confidence 367789999999999999999999988754 4444444443
No 306
>PRK01184 hypothetical protein; Provisional
Probab=97.59 E-value=6.6e-05 Score=66.13 Aligned_cols=36 Identities=36% Similarity=0.527 Sum_probs=29.2
Q ss_pred eEEEeecCCCCCHHHHHHHHHHHhCCceEEeeccccccc
Q 019334 75 LILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESE 113 (342)
Q Consensus 75 lglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~ 113 (342)
+.++|.||||||||++++ +++++|++++ +.++++.+
T Consensus 2 ~~i~l~G~~GsGKsT~a~-~~~~~g~~~i--~~~d~lr~ 37 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK-IAREMGIPVV--VMGDVIRE 37 (184)
T ss_pred cEEEEECCCCCCHHHHHH-HHHHcCCcEE--EhhHHHHH
Confidence 578999999999999998 7899997664 44677644
No 307
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.58 E-value=0.0022 Score=63.29 Aligned_cols=137 Identities=14% Similarity=0.178 Sum_probs=85.8
Q ss_pred CCCCCeEEEeecCCCCCHHHHHHHHHHHhCCceE---------------Eeecccccc--cc-cCC--cHHHHHHHHHHH
Q 019334 70 NVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPV---------------IMSAGELES--ER-AGE--PGKLIRERYRTA 129 (342)
Q Consensus 70 ~~k~PlglgL~GPPG~GKTllaravA~~~g~~~i---------------~vs~~eL~s--~~-~GE--sEr~iR~~F~~A 129 (342)
.-+.|-.++++||+|+||+.+|+++|+.+-+.=- .-+-+|++- +- .|. +=..||++-+.+
T Consensus 21 ~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~vdqiR~l~~~~ 100 (319)
T PRK06090 21 AGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKEGKSITVEQIRQCNRLA 100 (319)
T ss_pred cCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcCCCcCCHHHHHHHHHHH
Confidence 3588999999999999999999999987754210 001123321 00 011 223567665444
Q ss_pred HHhhhhcCCceEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCCcc
Q 019334 130 SQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYA 209 (342)
Q Consensus 130 ~e~~~~~~~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~~~Ldp 209 (342)
.... ..+.--|++||+.|..-. . -...||..+. |+ ..++.+|.+|+.++.|.|
T Consensus 101 ~~~~-~~~~~kV~iI~~ae~m~~-----------~-AaNaLLKtLE-------------EP-p~~t~fiL~t~~~~~lLp 153 (319)
T PRK06090 101 QESS-QLNGYRLFVIEPADAMNE-----------S-ASNALLKTLE-------------EP-APNCLFLLVTHNQKRLLP 153 (319)
T ss_pred hhCc-ccCCceEEEecchhhhCH-----------H-HHHHHHHHhc-------------CC-CCCeEEEEEECChhhChH
Confidence 3222 234557999999998731 1 1224555444 33 567888888999999999
Q ss_pred CCCCCCCCcceec-CCCHHHHHHHHHH
Q 019334 210 PLIRDGRMEKFYW-QPNLEDILNIVHR 235 (342)
Q Consensus 210 aLlRpGRfD~~i~-vP~~~~R~~Il~~ 235 (342)
.++= |-=.+.+ .|+.++-.+.|..
T Consensus 154 TI~S--RCq~~~~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 154 TIVS--RCQQWVVTPPSTAQAMQWLKG 178 (319)
T ss_pred HHHh--cceeEeCCCCCHHHHHHHHHH
Confidence 8654 6555444 3788877776653
No 308
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=97.58 E-value=0.00034 Score=68.64 Aligned_cols=32 Identities=31% Similarity=0.405 Sum_probs=29.7
Q ss_pred CCCCCeEEEeecCCCCCHHHHHHHHHHHhCCc
Q 019334 70 NVKVPLILGIWGGKGQGKSFQTELIFQAMGIE 101 (342)
Q Consensus 70 ~~k~PlglgL~GPPG~GKTllaravA~~~g~~ 101 (342)
..+.|..++|.||+|||||++|..+|..+|.+
T Consensus 88 ~~~~p~iIlI~G~sgsGKStlA~~La~~l~~~ 119 (301)
T PRK04220 88 KSKEPIIILIGGASGVGTSTIAFELASRLGIR 119 (301)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 44789999999999999999999999999987
No 309
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=97.58 E-value=0.0004 Score=62.63 Aligned_cols=78 Identities=12% Similarity=0.141 Sum_probs=45.5
Q ss_pred CCCC-eEEEeecCCCCCHHHHHHHHHH-----HhCCceE-----Eee-ccccc---------ccccCCcHHHHHHHHHHH
Q 019334 71 VKVP-LILGIWGGKGQGKSFQTELIFQ-----AMGIEPV-----IMS-AGELE---------SERAGEPGKLIRERYRTA 129 (342)
Q Consensus 71 ~k~P-lglgL~GPPG~GKTllaravA~-----~~g~~~i-----~vs-~~eL~---------s~~~GEsEr~iR~~F~~A 129 (342)
+... +.++|.||.|+|||++.|.++. +.|..+- .+. ...++ ..+.+.-..-++++..-+
T Consensus 24 i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~~~~~~~~~~~~~lg~~~~l~~~~s~fs~g~~~~~~i~ 103 (200)
T cd03280 24 LGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGSSLPVFENIFADIGDEQSIEQSLSTFSSHMKNIARIL 103 (200)
T ss_pred ECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccccccCcCccEEEEecCchhhhhcCcchHHHHHHHHHHHH
Confidence 4444 5799999999999999999883 3353211 111 11222 112222233334443333
Q ss_pred HHhhhhcCCceEEEeecccccCC
Q 019334 130 SQVVQNQGKMSCLMINDIDAGLG 152 (342)
Q Consensus 130 ~e~~~~~~~PcILfIDEIDAg~~ 152 (342)
.. ...|.++++||.-++..
T Consensus 104 ~~----~~~p~llllDEp~~glD 122 (200)
T cd03280 104 QH----ADPDSLVLLDELGSGTD 122 (200)
T ss_pred Hh----CCCCcEEEEcCCCCCCC
Confidence 22 24699999999988763
No 310
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=97.56 E-value=8.8e-05 Score=75.31 Aligned_cols=204 Identities=12% Similarity=0.118 Sum_probs=110.2
Q ss_pred cccccHHHHHHHHHH-HHHHHHHhhcCCCCC--eEEEeecCCCCCHHHHHHHHH---HH-hCCceEEeeccccccc----
Q 019334 45 DYYIAPVFMASLLCH-IVKNYIAHLLNVKVP--LILGIWGGKGQGKSFQTELIF---QA-MGIEPVIMSAGELESE---- 113 (342)
Q Consensus 45 ~~y~~~~f~d~l~~h-i~K~~l~~~~~~k~P--lglgL~GPPG~GKTllaravA---~~-~g~~~i~vs~~eL~s~---- 113 (342)
.+..+..|.+.++.+ -++..+.++.. -+| +-|+|.|++|+||+++|+++. .. ++.|||.++++.+-..
T Consensus 70 ~~~~~~~~~~LIG~~~~~~~~~eqik~-~ap~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~en~~~~ 148 (403)
T COG1221 70 PYLKSEALDDLIGESPSLQELREQIKA-YAPSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSENLQEA 148 (403)
T ss_pred hhccchhhhhhhccCHHHHHHHHHHHh-hCCCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCcCHHHH
Confidence 445555555555332 23333332221 233 579999999999999999886 33 5779999999876542
Q ss_pred ---------ccCCcHHHHHHHHHHHHHhhhhcCCceEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCc
Q 019334 114 ---------RAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQ 184 (342)
Q Consensus 114 ---------~~GEsEr~iR~~F~~A~e~~~~~~~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g 184 (342)
+-| ....-.-+|+.|- ==.||+|||--.-+ .++..|+..+|.=+..-+++
T Consensus 149 eLFG~~kGaftG-a~~~k~Glfe~A~--------GGtLfLDEI~~LP~------------~~Q~kLl~~le~g~~~rvG~ 207 (403)
T COG1221 149 ELFGHEKGAFTG-AQGGKAGLFEQAN--------GGTLFLDEIHRLPP------------EGQEKLLRVLEEGEYRRVGG 207 (403)
T ss_pred HHhccccceeec-ccCCcCchheecC--------CCEEehhhhhhCCH------------hHHHHHHHHHHcCceEecCC
Confidence 233 1222223554442 35899999976532 13445666666322222333
Q ss_pred cccccCCCCCccEEEeeCCCCCCccCCCCCCCCcc-------eecCCCHHHHHH-HHH-------HHhhcCC--C--CHH
Q 019334 185 DWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEK-------FYWQPNLEDILN-IVH-------RMYEKDG--I--TKD 245 (342)
Q Consensus 185 ~~~~~~~~~~V~VIatTNr~~~LdpaLlRpGRfD~-------~i~vP~~~~R~~-Il~-------~~~~~~~--~--s~~ 245 (342)
.......|.+|+|||- .++. -++.| .|- .|-+|...+|.+ |+- .+.+.-+ + ...
T Consensus 208 ---~~~~~~dVRli~AT~~--~l~~-~~~~g-~dl~~rl~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~ 280 (403)
T COG1221 208 ---SQPRPVDVRLICATTE--DLEE-AVLAG-ADLTRRLNILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSP 280 (403)
T ss_pred ---CCCcCCCceeeecccc--CHHH-HHHhh-cchhhhhcCceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCH
Confidence 1222568999999974 3443 44444 443 223577766643 442 1222222 1 122
Q ss_pred HHHHHhhc--CCCCccchHHHHHHHHHHHHHHHHHHHc
Q 019334 246 EVGSIVKT--FPNQALDFYGALRSRTYDRSISKWIDDI 281 (342)
Q Consensus 246 di~~lvd~--f~~~~~df~gAlrs~~~~e~ir~w~~~~ 281 (342)
+..+..-. |||- -+.|+..+..-.+..|....
T Consensus 281 ~a~~~L~~y~~pGN----irELkN~Ve~~~~~~~~~~~ 314 (403)
T COG1221 281 EALRALLAYDWPGN----IRELKNLVERAVAQASGEGQ 314 (403)
T ss_pred HHHHHHHhCCCCCc----HHHHHHHHHHHHHHhccccC
Confidence 33333322 2442 34555666666667776555
No 311
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.55 E-value=0.00013 Score=63.78 Aligned_cols=77 Identities=16% Similarity=0.192 Sum_probs=46.8
Q ss_pred CCCCeEEEeecCCCCCHHHHHHHHHHHhCC--ceEEeecccccc--------cccCC----cHHHHHHHHHHHHHhhhhc
Q 019334 71 VKVPLILGIWGGKGQGKSFQTELIFQAMGI--EPVIMSAGELES--------ERAGE----PGKLIRERYRTASQVVQNQ 136 (342)
Q Consensus 71 ~k~PlglgL~GPPG~GKTllaravA~~~g~--~~i~vs~~eL~s--------~~~GE----sEr~iR~~F~~A~e~~~~~ 136 (342)
+++--.++|.||+|||||++.+++++..-. --|.+.+.++.. ..+|- |.-. +++..-|+.++
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~-~qrl~laral~--- 98 (163)
T cd03216 23 VRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGE-RQMVEIARALA--- 98 (163)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHH-HHHHHHHHHHh---
Confidence 444568999999999999999999976431 112232222211 00110 0001 34445565554
Q ss_pred CCceEEEeecccccC
Q 019334 137 GKMSCLMINDIDAGL 151 (342)
Q Consensus 137 ~~PcILfIDEIDAg~ 151 (342)
..|.+|++||--+++
T Consensus 99 ~~p~illlDEP~~~L 113 (163)
T cd03216 99 RNARLLILDEPTAAL 113 (163)
T ss_pred cCCCEEEEECCCcCC
Confidence 479999999998877
No 312
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.53 E-value=0.00025 Score=65.17 Aligned_cols=81 Identities=12% Similarity=0.203 Sum_probs=51.1
Q ss_pred CCCCCeEEEeecCCCCCHHHHHHHHHHH---hCCceEEeecccccc--------------cc---------------cCC
Q 019334 70 NVKVPLILGIWGGKGQGKSFQTELIFQA---MGIEPVIMSAGELES--------------ER---------------AGE 117 (342)
Q Consensus 70 ~~k~PlglgL~GPPG~GKTllaravA~~---~g~~~i~vs~~eL~s--------------~~---------------~GE 117 (342)
|+.....++|+||||+|||++|..++.+ .|-+.+.++..+=.. ++ +..
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~~~~~~~~~~~g~~~~~~~~~g~l~i~~~~~~~~~~ 100 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSKSYLKQMESVKIDISDFFLWGYLRIFPLNTEGFEW 100 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHHHHHCCCChhHHHhCCCceEEecccccccc
Confidence 4455578999999999999999998644 355555555422110 00 000
Q ss_pred cHHHHHHHHHHHHHhhhhcCCceEEEeecccccC
Q 019334 118 PGKLIRERYRTASQVVQNQGKMSCLMINDIDAGL 151 (342)
Q Consensus 118 sEr~iR~~F~~A~e~~~~~~~PcILfIDEIDAg~ 151 (342)
......+.+....+.+. ...|.+|+|||+-++.
T Consensus 101 ~~~~~~~ll~~l~~~i~-~~~~~~iviDs~t~~~ 133 (234)
T PRK06067 101 NSTLANKLLELIIEFIK-SKREDVIIIDSLTIFA 133 (234)
T ss_pred CcchHHHHHHHHHHHHH-hcCCCEEEEecHHHHH
Confidence 11223455555655554 4579999999999864
No 313
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.53 E-value=0.0006 Score=61.60 Aligned_cols=40 Identities=20% Similarity=0.207 Sum_probs=29.0
Q ss_pred CCCCCeEEEeecCCCCCHHHHHHHHHHHh---C------CceEEeeccc
Q 019334 70 NVKVPLILGIWGGKGQGKSFQTELIFQAM---G------IEPVIMSAGE 109 (342)
Q Consensus 70 ~~k~PlglgL~GPPG~GKTllaravA~~~---g------~~~i~vs~~e 109 (342)
|+..-..+.|+||||||||++|..+|... + ...+.++..+
T Consensus 15 G~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~ 63 (226)
T cd01393 15 GIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEG 63 (226)
T ss_pred CCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCC
Confidence 34444679999999999999999988653 2 4556666543
No 314
>PRK06217 hypothetical protein; Validated
Probab=97.52 E-value=9.2e-05 Score=65.76 Aligned_cols=34 Identities=15% Similarity=0.186 Sum_probs=28.6
Q ss_pred EEEeecCCCCCHHHHHHHHHHHhCCceEEeeccccc
Q 019334 76 ILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELE 111 (342)
Q Consensus 76 glgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~ 111 (342)
.|+|.|+||||||++|+++++.+|++++.+ .+++
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~--D~~~ 36 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDT--DDYF 36 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEc--Ccee
Confidence 488999999999999999999999886554 4454
No 315
>PRK14528 adenylate kinase; Provisional
Probab=97.51 E-value=0.0001 Score=66.22 Aligned_cols=36 Identities=25% Similarity=0.457 Sum_probs=30.2
Q ss_pred EEEeecCCCCCHHHHHHHHHHHhCCceEEeeccccccc
Q 019334 76 ILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESE 113 (342)
Q Consensus 76 glgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~ 113 (342)
.++|.||||+|||++|+.+|+.+|++. ++.++++..
T Consensus 3 ~i~i~G~pGsGKtt~a~~la~~~~~~~--is~~~~lr~ 38 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILCERLSIPQ--ISTGDILRE 38 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCe--eeCCHHHHH
Confidence 478899999999999999999999654 566777744
No 316
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=97.50 E-value=0.00095 Score=60.90 Aligned_cols=38 Identities=16% Similarity=0.094 Sum_probs=28.9
Q ss_pred CCCCCeEEEeecCCCCCHHHHHHHHHHHh----CCceEEeec
Q 019334 70 NVKVPLILGIWGGKGQGKSFQTELIFQAM----GIEPVIMSA 107 (342)
Q Consensus 70 ~~k~PlglgL~GPPG~GKTllaravA~~~----g~~~i~vs~ 107 (342)
|+.+-..++|.||||+|||++|..+|... |.+.+.+|.
T Consensus 9 Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~ 50 (242)
T cd00984 9 GLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSL 50 (242)
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeC
Confidence 44444678999999999999988776543 777777764
No 317
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.48 E-value=0.00041 Score=69.54 Aligned_cols=76 Identities=18% Similarity=0.181 Sum_probs=47.7
Q ss_pred CCCCeEEEeecCCCCCHHHHHHHHHHHh---CCceEEeeccccccc------ccCC--------cHHHHHHHHHHHHHhh
Q 019334 71 VKVPLILGIWGGKGQGKSFQTELIFQAM---GIEPVIMSAGELESE------RAGE--------PGKLIRERYRTASQVV 133 (342)
Q Consensus 71 ~k~PlglgL~GPPG~GKTllaravA~~~---g~~~i~vs~~eL~s~------~~GE--------sEr~iR~~F~~A~e~~ 133 (342)
+.+-..++|+||||+|||+++..+|... |-+.+.+++.|-.+. ..|- ++..+.++++..
T Consensus 79 i~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i---- 154 (372)
T cd01121 79 LVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASI---- 154 (372)
T ss_pred ccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHH----
Confidence 4444679999999999999999888654 346677776432211 1111 111222333222
Q ss_pred hhcCCceEEEeecccccC
Q 019334 134 QNQGKMSCLMINDIDAGL 151 (342)
Q Consensus 134 ~~~~~PcILfIDEIDAg~ 151 (342)
. ..+|.+|+||+|-...
T Consensus 155 ~-~~~~~lVVIDSIq~l~ 171 (372)
T cd01121 155 E-ELKPDLVIIDSIQTVY 171 (372)
T ss_pred H-hcCCcEEEEcchHHhh
Confidence 1 3579999999999875
No 318
>PHA02624 large T antigen; Provisional
Probab=97.47 E-value=0.0023 Score=68.37 Aligned_cols=143 Identities=16% Similarity=0.164 Sum_probs=79.8
Q ss_pred HHHHHHHHHHhhcCCCCC--eEEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccccccCCcHHHHHHHHHHHHHhhh
Q 019334 57 LCHIVKNYIAHLLNVKVP--LILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQ 134 (342)
Q Consensus 57 ~~hi~K~~l~~~~~~k~P--lglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~~~GEsEr~iR~~F~~A~e~~~ 134 (342)
...++|.++. ..| ..++||||||+|||++|.++++.+|-..+.|+++.= + .-|...-. +
T Consensus 417 ~~~~lk~~l~-----giPKk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt~---------k---s~FwL~pl-~- 477 (647)
T PHA02624 417 IYDILKLIVE-----NVPKRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPPD---------K---LNFELGCA-I- 477 (647)
T ss_pred HHHHHHHHHh-----cCCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCcc---------h---hHHHhhhh-h-
Confidence 3444566655 445 499999999999999999999999655666775421 1 12433211 1
Q ss_pred hcCCceEEEeecccccCC-CCC-CCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCCccCCC
Q 019334 135 NQGKMSCLMINDIDAGLG-RFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLI 212 (342)
Q Consensus 135 ~~~~PcILfIDEIDAg~~-r~~-~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~~~LdpaLl 212 (342)
---+.+|||+-.-+- ..+ .++..++| ..-|-+.|||---|+++--...--+..=-|.|+|||. ..||..|.
T Consensus 478 ---D~~~~l~dD~t~~~~~~~~Lp~G~~~dN---l~~lRn~LDG~V~v~ld~KH~n~~q~~~PPlliT~Ne-y~iP~T~~ 550 (647)
T PHA02624 478 ---DQFMVVFEDVKGQPADNKDLPSGQGMNN---LDNLRDYLDGSVPVNLEKKHLNKRSQIFPPGIVTMNE-YLIPQTVK 550 (647)
T ss_pred ---hceEEEeeeccccccccccCCcccccch---hhHHHhhcCCCCccccchhccCchhccCCCeEEeecC-cccchhHH
Confidence 124667888866443 222 12222221 1356677886213444331111110112478999997 44555554
Q ss_pred CCCCCcceec-CCCHH
Q 019334 213 RDGRMEKFYW-QPNLE 227 (342)
Q Consensus 213 RpGRfD~~i~-vP~~~ 227 (342)
= ||-+.+. .|..-
T Consensus 551 ~--Rf~~~~~F~~k~~ 564 (647)
T PHA02624 551 A--RFAKVLDFKPKPY 564 (647)
T ss_pred H--HHHHhccccccHH
Confidence 4 7877654 35443
No 319
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=97.47 E-value=0.00098 Score=62.76 Aligned_cols=175 Identities=16% Similarity=0.142 Sum_probs=93.4
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccccccCCcHHHHHHHHHHHHHhhhhcCCceEEEeecccccC
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGL 151 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~~~GEsEr~iR~~F~~A~e~~~~~~~PcILfIDEIDAg~ 151 (342)
..-++-.+.||.|||||-.+|++|+.+|.+++..+..+-.+ -+.+.++|.=++.. =|-+.|||++.+-
T Consensus 30 ~~~~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~------~~~l~ril~G~~~~------GaW~cfdefnrl~ 97 (231)
T PF12774_consen 30 SLNLGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMD------YQSLSRILKGLAQS------GAWLCFDEFNRLS 97 (231)
T ss_dssp CTTTEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-------HHHHHHHHHHHHHH------T-EEEEETCCCSS
T ss_pred ccCCCCCCcCCCCCCchhHHHHHHHHhCCeEEEeccccccc------HHHHHHHHHHHhhc------Cchhhhhhhhhhh
Confidence 34577789999999999999999999999999999998886 77888899777653 4778899999753
Q ss_pred CCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeC----CCCCCccCCCCCCCCcceec--CCC
Q 019334 152 GRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGN----DFSTIYAPLIRDGRMEKFYW--QPN 225 (342)
Q Consensus 152 ~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTN----r~~~LdpaLlRpGRfD~~i~--vP~ 225 (342)
.. .-+.+ .+.+......+-.+-+.+.+.|.- -...+.+-|.+|.| .-..||..|+. +=|-+. .||
T Consensus 98 ~~---vLS~i-~~~i~~i~~al~~~~~~~~~~g~~--i~l~~~~~iFiT~np~y~gr~~LP~nLk~---lFRpvam~~PD 168 (231)
T PF12774_consen 98 EE---VLSVI-SQQIQSIQDALRAKQKSFTLEGQE--IKLNPNCGIFITMNPGYAGRSELPENLKA---LFRPVAMMVPD 168 (231)
T ss_dssp HH---HHHHH-HHHHHHHHHHHHCTSSEEEETTCE--EE--TT-EEEEEE-B-CCCC--S-HHHCT---TEEEEE--S--
T ss_pred HH---HHHHH-HHHHHHHHHhhcccccccccCCCE--EEEccceeEEEeeccccCCcccCCHhHHH---HhheeEEeCCC
Confidence 10 11111 122332222223343445554421 11133455566666 23557766654 112232 388
Q ss_pred HHHHHHHHHHHhhcCCCC-HHHHHH-------Hh-hcCCCCc-cchH-HHHHHHHH
Q 019334 226 LEDILNIVHRMYEKDGIT-KDEVGS-------IV-KTFPNQA-LDFY-GALRSRTY 270 (342)
Q Consensus 226 ~~~R~~Il~~~~~~~~~s-~~di~~-------lv-d~f~~~~-~df~-gAlrs~~~ 270 (342)
.+- |.+.++-..++. ...+.+ +. +-++.|+ -||- .|+++.+.
T Consensus 169 ~~~---I~ei~L~s~GF~~a~~La~kl~~l~~l~~~~lS~q~hydfgLRalk~vl~ 221 (231)
T PF12774_consen 169 LSL---IAEILLLSQGFKDAKSLAKKLVSLFQLCKEQLSKQDHYDFGLRALKSVLR 221 (231)
T ss_dssp HHH---HHHHHHHCCCTSSHHHHHHHHHHHHHHHHHCS-SSTT---SHHHHHHHHH
T ss_pred HHH---HHHHHHHHcCchhHHHHHHHHHHHHHHHHHhhccCccccccHHHHHHHHH
Confidence 765 445566666653 233321 21 2455655 5763 56666554
No 320
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=97.46 E-value=0.00014 Score=66.16 Aligned_cols=50 Identities=30% Similarity=0.359 Sum_probs=36.8
Q ss_pred eEEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccccccCCcH---HHHHHHH
Q 019334 75 LILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPG---KLIRERY 126 (342)
Q Consensus 75 lglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~~~GEsE---r~iR~~F 126 (342)
+.++|.||+|||||++|+.+++.+|++++ ++.++......+.+ +.+++.|
T Consensus 2 ~~i~itG~~gsGKst~~~~l~~~~g~~~i--~~D~~~~~~~~~~~~~~~~l~~~f 54 (195)
T PRK14730 2 RRIGLTGGIASGKSTVGNYLAQQKGIPIL--DADIYAREALAPGSPILKAILQRY 54 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCeEe--eCcHHHHHHHhcCchHHHHHHHHh
Confidence 46899999999999999999998897665 67777655443332 3444444
No 321
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=97.45 E-value=0.00097 Score=73.60 Aligned_cols=111 Identities=20% Similarity=0.196 Sum_probs=72.1
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHh---CCceEEeeccc------ccc---cccCCcHHHHHHHHHHHHHhhhhcCCc
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQAM---GIEPVIMSAGE------LES---ERAGEPGKLIRERYRTASQVVQNQGKM 139 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~~---g~~~i~vs~~e------L~s---~~~GEsEr~iR~~F~~A~e~~~~~~~P 139 (342)
+++--+++.||.|+|||-+|+|+|..+ .-.+|+++.+| +.+ +|+|..+-- .+.+|. + +.-=
T Consensus 589 ~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evskligsp~gyvG~e~gg---~Lteav---r-rrP~ 661 (898)
T KOG1051|consen 589 NPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSKLIGSPPGYVGKEEGG---QLTEAV---K-RRPY 661 (898)
T ss_pred CCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhhccCCCcccccchhHH---HHHHHH---h-cCCc
Confidence 456778999999999999999999876 23799999986 222 367766542 333432 1 3345
Q ss_pred eEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccc-cCccccccCCCCCccEEEeeCCCC
Q 019334 140 SCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVS-IGQDWRESDITNRIPIIFTGNDFS 205 (342)
Q Consensus 140 cILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~-l~g~~~~~~~~~~V~VIatTNr~~ 205 (342)
|||+|||||..=+ .|...|+.++|. +.+- ..| ...+ -.++.||+|.|.-.
T Consensus 662 sVVLfdeIEkAh~------------~v~n~llq~lD~-GrltDs~G--r~Vd-~kN~I~IMTsn~~~ 712 (898)
T KOG1051|consen 662 SVVLFEEIEKAHP------------DVLNILLQLLDR-GRLTDSHG--REVD-FKNAIFIMTSNVGS 712 (898)
T ss_pred eEEEEechhhcCH------------HHHHHHHHHHhc-CccccCCC--cEee-ccceEEEEecccch
Confidence 9999999998532 255566666662 1110 001 1112 45799999987643
No 322
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=97.44 E-value=0.00059 Score=59.70 Aligned_cols=108 Identities=19% Similarity=0.108 Sum_probs=58.7
Q ss_pred CCeEEEeecCCCCCHHHHHHHHHHH---------------hCCceEEeeccccc-c-cccCCcHHHHHHHHHHHHHhhhh
Q 019334 73 VPLILGIWGGKGQGKSFQTELIFQA---------------MGIEPVIMSAGELE-S-ERAGEPGKLIRERYRTASQVVQN 135 (342)
Q Consensus 73 ~PlglgL~GPPG~GKTllaravA~~---------------~g~~~i~vs~~eL~-s-~~~GEsEr~iR~~F~~A~e~~~~ 135 (342)
.|....|-||.|+|||.+.++++-- .|.+.-.++..-++ + ...|. + +++..-|+.++..
T Consensus 20 ~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~lS~G-~---~~~~~la~~L~~~ 95 (162)
T cd03227 20 EGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRRSGVKAGCIVAAVSAELIFTRLQLSGG-E---KELSALALILALA 95 (162)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccCcccCCCcceeeEEEEehheeecccc-H---HHHHHHHHHHHhc
Confidence 3568999999999999999998633 23211111100000 0 11111 2 3333344333321
Q ss_pred -cCCceEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCCc
Q 019334 136 -QGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIY 208 (342)
Q Consensus 136 -~~~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~~~Ld 208 (342)
.+.|++++|||+.++.... +.+.+...+...+. . +..+|++|.+++...
T Consensus 96 ~~~~~~llllDEp~~gld~~-------~~~~l~~~l~~~~~----------------~-~~~vii~TH~~~~~~ 145 (162)
T cd03227 96 SLKPRPLYILDEIDRGLDPR-------DGQALAEAILEHLV----------------K-GAQVIVITHLPELAE 145 (162)
T ss_pred CCCCCCEEEEeCCCCCCCHH-------HHHHHHHHHHHHHh----------------c-CCEEEEEcCCHHHHH
Confidence 1479999999999987321 12334444443222 1 456788888877544
No 323
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=97.43 E-value=0.00053 Score=60.62 Aligned_cols=41 Identities=15% Similarity=0.248 Sum_probs=33.8
Q ss_pred CCCCeEEEeecCCCCCHHHHHHHHHHHh---CCceEEeeccccc
Q 019334 71 VKVPLILGIWGGKGQGKSFQTELIFQAM---GIEPVIMSAGELE 111 (342)
Q Consensus 71 ~k~PlglgL~GPPG~GKTllaravA~~~---g~~~i~vs~~eL~ 111 (342)
...|..++|.|+||||||+++++++..+ |...+.+++..+-
T Consensus 15 ~~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~r 58 (184)
T TIGR00455 15 GHRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNVR 58 (184)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHHH
Confidence 4678899999999999999999999887 4456777776654
No 324
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.43 E-value=0.00022 Score=64.26 Aligned_cols=40 Identities=30% Similarity=0.587 Sum_probs=31.8
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHhCC-ceEEeeccccc
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQAMGI-EPVIMSAGELE 111 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~~g~-~~i~vs~~eL~ 111 (342)
+.|..++|.||+|||||++++++++.++. .+..++..+.+
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~~~ 44 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDSYY 44 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCccc
Confidence 46899999999999999999999999843 44455555444
No 325
>PRK04182 cytidylate kinase; Provisional
Probab=97.43 E-value=0.00014 Score=62.66 Aligned_cols=29 Identities=31% Similarity=0.528 Sum_probs=26.5
Q ss_pred EEEeecCCCCCHHHHHHHHHHHhCCceEE
Q 019334 76 ILGIWGGKGQGKSFQTELIFQAMGIEPVI 104 (342)
Q Consensus 76 glgL~GPPG~GKTllaravA~~~g~~~i~ 104 (342)
.++|.|+||||||++++++|+++|++++.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg~~~id 30 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLGLKHVS 30 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEec
Confidence 58899999999999999999999987765
No 326
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=97.43 E-value=0.00036 Score=68.67 Aligned_cols=69 Identities=14% Similarity=0.181 Sum_probs=42.6
Q ss_pred CeEEEeecCCCCCHHHHHHHHHHHhCC----ceEEee-ccccc---------ccccCCcHHHHHHHHHHHHHhhhhcCCc
Q 019334 74 PLILGIWGGKGQGKSFQTELIFQAMGI----EPVIMS-AGELE---------SERAGEPGKLIRERYRTASQVVQNQGKM 139 (342)
Q Consensus 74 PlglgL~GPPG~GKTllaravA~~~g~----~~i~vs-~~eL~---------s~~~GEsEr~iR~~F~~A~e~~~~~~~P 139 (342)
.-.++|.||+|+|||++.+++...+.- .++.+. ..|+. ...+|.......+..+.|. +..|
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~l-----r~~p 196 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNKRSLINQREVGLDTLSFANALRAAL-----REDP 196 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCccceEEccccCCCCcCHHHHHHHhh-----ccCC
Confidence 356889999999999999999986642 333332 22322 1223433222333333332 4579
Q ss_pred eEEEeecc
Q 019334 140 SCLMINDI 147 (342)
Q Consensus 140 cILfIDEI 147 (342)
.+|++|||
T Consensus 197 d~i~vgEi 204 (343)
T TIGR01420 197 DVILIGEM 204 (343)
T ss_pred CEEEEeCC
Confidence 99999998
No 327
>PLN02459 probable adenylate kinase
Probab=97.42 E-value=0.00015 Score=69.86 Aligned_cols=40 Identities=20% Similarity=0.237 Sum_probs=33.4
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHhCCceEEeeccccccc
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESE 113 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~ 113 (342)
..|..++|.||||+|||++|+.+|+.+| +.++|.++|+..
T Consensus 27 ~~~~~ii~~G~PGsGK~T~a~~la~~~~--~~~is~gdllR~ 66 (261)
T PLN02459 27 GRNVNWVFLGCPGVGKGTYASRLSKLLG--VPHIATGDLVRE 66 (261)
T ss_pred cCccEEEEECCCCCCHHHHHHHHHHHhC--CcEEeCcHHHHH
Confidence 3344577789999999999999999998 678888988854
No 328
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.42 E-value=0.00043 Score=69.96 Aligned_cols=74 Identities=19% Similarity=0.202 Sum_probs=46.1
Q ss_pred EEEeecCCCCCHHHHHHHHHHHhCC-----ceEEeec---------------ccccccccCCcH-HHHH---HHHHHHHH
Q 019334 76 ILGIWGGKGQGKSFQTELIFQAMGI-----EPVIMSA---------------GELESERAGEPG-KLIR---ERYRTASQ 131 (342)
Q Consensus 76 glgL~GPPG~GKTllaravA~~~g~-----~~i~vs~---------------~eL~s~~~GEsE-r~iR---~~F~~A~e 131 (342)
-.+|.||||||||++++.+|+.+.. .++.+-. +++...+.-++. ..++ .+...|..
T Consensus 135 R~LIvG~pGtGKTTLl~~la~~i~~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~~~~~~~v~~~~~~~Ae~ 214 (380)
T PRK12608 135 RGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRPPDEHIRVAELVLERAKR 214 (380)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCCHHHHHHHHHHHHHHHHH
Confidence 4589999999999999999987744 2333211 233333322333 2232 22233333
Q ss_pred hhhhcCCceEEEeeccccc
Q 019334 132 VVQNQGKMSCLMINDIDAG 150 (342)
Q Consensus 132 ~~~~~~~PcILfIDEIDAg 150 (342)
. ...|+..+|++||+...
T Consensus 215 f-~~~GkdVVLvlDsltr~ 232 (380)
T PRK12608 215 L-VEQGKDVVILLDSLTRL 232 (380)
T ss_pred H-HHcCCCEEEEEeCcHHH
Confidence 3 34799999999999974
No 329
>COG1485 Predicted ATPase [General function prediction only]
Probab=97.40 E-value=0.00095 Score=67.01 Aligned_cols=101 Identities=16% Similarity=0.315 Sum_probs=63.4
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHhCCce-EEeec----cccc---ccccCCcHHHHHHHHHHHHHhhhhcCCceEEE
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQAMGIEP-VIMSA----GELE---SERAGEPGKLIRERYRTASQVVQNQGKMSCLM 143 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~~g~~~-i~vs~----~eL~---s~~~GEsEr~iR~~F~~A~e~~~~~~~PcILf 143 (342)
.+|+|+.||||=|+|||+|--.....+-.+- .++-- -++. ..+.|++.- +.--|.+.+ +.--||.
T Consensus 63 ~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~~~k~R~HFh~FM~~vH~~l~~l~g~~dp----l~~iA~~~~---~~~~vLC 135 (367)
T COG1485 63 GPVRGLYLWGGVGRGKTMLMDLFYESLPGERKRRLHFHRFMARVHQRLHTLQGQTDP----LPPIADELA---AETRVLC 135 (367)
T ss_pred CCCceEEEECCCCccHHHHHHHHHhhCCccccccccHHHHHHHHHHHHHHHcCCCCc----cHHHHHHHH---hcCCEEE
Confidence 4779999999999999999999887765432 11110 0111 123355411 122333332 3457999
Q ss_pred eecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCC
Q 019334 144 INDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDF 204 (342)
Q Consensus 144 IDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~ 204 (342)
|||+.-- +..+-|+.++|++.|= .++|.+|+|.|.+
T Consensus 136 fDEF~Vt---------DI~DAMiL~rL~~~Lf----------------~~GV~lvaTSN~~ 171 (367)
T COG1485 136 FDEFEVT---------DIADAMILGRLLEALF----------------ARGVVLVATSNTA 171 (367)
T ss_pred eeeeeec---------ChHHHHHHHHHHHHHH----------------HCCcEEEEeCCCC
Confidence 9998651 2335688888886433 3589999999873
No 330
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=97.40 E-value=7.8e-05 Score=67.94 Aligned_cols=53 Identities=30% Similarity=0.377 Sum_probs=37.8
Q ss_pred EEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccccccCCcHHHHHHHHHHHH
Q 019334 76 ILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTAS 130 (342)
Q Consensus 76 glgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~~~GEsEr~iR~~F~~A~ 130 (342)
.+-|.||||||||+.++.+|..+|.++ +|+|.++...+-|-+=.+-+..+.|.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~~--vsaG~iFR~~A~e~gmsl~ef~~~AE 54 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLKL--VSAGTIFREMARERGMSLEEFSRYAE 54 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCce--eeccHHHHHHHHHcCCCHHHHHHHHh
Confidence 467899999999999999999999776 56787775444333333444444443
No 331
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=97.39 E-value=0.00027 Score=68.80 Aligned_cols=30 Identities=27% Similarity=0.467 Sum_probs=26.4
Q ss_pred CCCCCeEEEeecCCCCCHHHHHHHHHHHhC
Q 019334 70 NVKVPLILGIWGGKGQGKSFQTELIFQAMG 99 (342)
Q Consensus 70 ~~k~PlglgL~GPPG~GKTllaravA~~~g 99 (342)
..+.|.++||.||+|||||++|+.+...+.
T Consensus 58 ~~~~p~IIGIaG~~GSGKSTlar~L~~ll~ 87 (290)
T TIGR00554 58 GAKIPYIISIAGSVAVGKSTTARILQALLS 87 (290)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 457899999999999999999998877664
No 332
>PRK03846 adenylylsulfate kinase; Provisional
Probab=97.39 E-value=0.00075 Score=60.78 Aligned_cols=62 Identities=19% Similarity=0.246 Sum_probs=43.7
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHh---CCceEEeecccccccc-------cCCcHHHHHHHHHHHHHhh
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQAM---GIEPVIMSAGELESER-------AGEPGKLIRERYRTASQVV 133 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~~---g~~~i~vs~~eL~s~~-------~GEsEr~iR~~F~~A~e~~ 133 (342)
..|..+.|.|+||||||+++++++..+ |...+.+++.++.... ..+..+.++.+...|...+
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~ 93 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVRHGLCSDLGFSDADRKENIRRVGEVAKLMV 93 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHHhhhhhcCCcCcccHHHHHHHHHHHHHHHh
Confidence 567899999999999999999999986 5567778776554322 2334456666555565544
No 333
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=97.39 E-value=2.9e-05 Score=72.35 Aligned_cols=44 Identities=16% Similarity=0.101 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHh-hcCCCCCeEEEeecCCCCCHHHHHHHHHHHh
Q 019334 52 FMASLLCHIVKNYIAH-LLNVKVPLILGIWGGKGQGKSFQTELIFQAM 98 (342)
Q Consensus 52 f~d~l~~hi~K~~l~~-~~~~k~PlglgL~GPPG~GKTllaravA~~~ 98 (342)
|.|+.++..+|..+.- +.| .-.++|.||||||||++|+++..-+
T Consensus 2 f~dI~GQe~aKrAL~iAAaG---~h~lLl~GppGtGKTmlA~~l~~lL 46 (206)
T PF01078_consen 2 FSDIVGQEEAKRALEIAAAG---GHHLLLIGPPGTGKTMLARRLPSLL 46 (206)
T ss_dssp TCCSSSTHHHHHHHHHHHHC---C--EEEES-CCCTHHHHHHHHHHCS
T ss_pred hhhhcCcHHHHHHHHHHHcC---CCCeEEECCCCCCHHHHHHHHHHhC
Confidence 5566778888888863 223 4699999999999999999999654
No 334
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.38 E-value=0.001 Score=60.73 Aligned_cols=29 Identities=24% Similarity=0.283 Sum_probs=25.0
Q ss_pred CCCCeEEEeecCCCCCHHHHHHHHHHHhC
Q 019334 71 VKVPLILGIWGGKGQGKSFQTELIFQAMG 99 (342)
Q Consensus 71 ~k~PlglgL~GPPG~GKTllaravA~~~g 99 (342)
.+.+.-++|.||||.|||++|.-+|..+.
T Consensus 2 ~~~~mki~ITG~PGvGKtTl~~ki~e~L~ 30 (179)
T COG1618 2 IKMAMKIFITGRPGVGKTTLVLKIAEKLR 30 (179)
T ss_pred CCcceEEEEeCCCCccHHHHHHHHHHHHH
Confidence 35678899999999999999999996654
No 335
>PRK04296 thymidine kinase; Provisional
Probab=97.38 E-value=0.00063 Score=61.37 Aligned_cols=70 Identities=16% Similarity=0.270 Sum_probs=43.9
Q ss_pred eEEEeecCCCCCHHHHHHHHHHHh---CCceEEeecc----c----ccccccCCcH-----HHHHHHHHHHHHhhhhcCC
Q 019334 75 LILGIWGGKGQGKSFQTELIFQAM---GIEPVIMSAG----E----LESERAGEPG-----KLIRERYRTASQVVQNQGK 138 (342)
Q Consensus 75 lglgL~GPPG~GKTllaravA~~~---g~~~i~vs~~----e----L~s~~~GEsE-----r~iR~~F~~A~e~~~~~~~ 138 (342)
.+.+++||||+|||+++..++.++ |-..+.++++ + +. ...|-+- ....+.++.+.+ ..+.
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~~~~~~i~-~~lg~~~~~~~~~~~~~~~~~~~~---~~~~ 78 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRYGEGKVV-SRIGLSREAIPVSSDTDIFELIEE---EGEK 78 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEeccccccccCCcEe-cCCCCcccceEeCChHHHHHHHHh---hCCC
Confidence 468899999999999988777655 5566656431 1 21 2223211 123445555443 1467
Q ss_pred ceEEEeeccc
Q 019334 139 MSCLMINDID 148 (342)
Q Consensus 139 PcILfIDEID 148 (342)
+.+|+|||+.
T Consensus 79 ~dvviIDEaq 88 (190)
T PRK04296 79 IDCVLIDEAQ 88 (190)
T ss_pred CCEEEEEccc
Confidence 8999999993
No 336
>PRK13975 thymidylate kinase; Provisional
Probab=97.37 E-value=0.00032 Score=61.96 Aligned_cols=29 Identities=21% Similarity=0.202 Sum_probs=25.7
Q ss_pred eEEEeecCCCCCHHHHHHHHHHHhCCceE
Q 019334 75 LILGIWGGKGQGKSFQTELIFQAMGIEPV 103 (342)
Q Consensus 75 lglgL~GPPG~GKTllaravA~~~g~~~i 103 (342)
+.+.|-||+|||||++++.+|+.++....
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~~~~~ 31 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLNAFWT 31 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCee
Confidence 57889999999999999999999996543
No 337
>PRK05439 pantothenate kinase; Provisional
Probab=97.37 E-value=0.00028 Score=69.38 Aligned_cols=77 Identities=19% Similarity=0.273 Sum_probs=48.9
Q ss_pred HHHHhhhhhhhhcccccccHHHHHHHHH----------HHHHHHHHhhcCCCCCeEEEeecCCCCCHHHHHHHHHHHhC-
Q 019334 31 YRQKVTRSFEYLQGDYYIAPVFMASLLC----------HIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMG- 99 (342)
Q Consensus 31 ~~~~~~r~f~~~~~~~y~~~~f~d~l~~----------hi~K~~l~~~~~~k~PlglgL~GPPG~GKTllaravA~~~g- 99 (342)
+|+-.-+--.+.+...|+| +-++.. ++.+.|+. ....+.|.+|||.||||||||++|+.++..++
T Consensus 37 l~~~~~~~~~~~v~~iy~p---larli~~~~~~~~~~~~~~~~fl~-~~~~~~~~iIgIaG~~gsGKSTla~~L~~~l~~ 112 (311)
T PRK05439 37 LRGLNDPISLEEVAEIYLP---LSRLLNLYVAANQRLQAALEQFLG-KNGQKVPFIIGIAGSVAVGKSTTARLLQALLSR 112 (311)
T ss_pred hhcCCCCCCHHHHHHHHHH---HHHHHHHHHHhhHHHHHHHHHHhc-ccCCCCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4444444445667888888 111111 11222222 22457899999999999999999999998664
Q ss_pred ----CceEEeeccccc
Q 019334 100 ----IEPVIMSAGELE 111 (342)
Q Consensus 100 ----~~~i~vs~~eL~ 111 (342)
.+...++..+.+
T Consensus 113 ~~~~~~v~vi~~DdFy 128 (311)
T PRK05439 113 WPEHPKVELVTTDGFL 128 (311)
T ss_pred hCCCCceEEEeccccc
Confidence 345566666655
No 338
>PRK00889 adenylylsulfate kinase; Provisional
Probab=97.37 E-value=0.00073 Score=59.14 Aligned_cols=38 Identities=13% Similarity=0.210 Sum_probs=30.3
Q ss_pred CCeEEEeecCCCCCHHHHHHHHHHHh---CCceEEeecccc
Q 019334 73 VPLILGIWGGKGQGKSFQTELIFQAM---GIEPVIMSAGEL 110 (342)
Q Consensus 73 ~PlglgL~GPPG~GKTllaravA~~~---g~~~i~vs~~eL 110 (342)
.+..+.|.|+||+|||+++++++..+ |..++.+++..+
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~ 43 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAV 43 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccH
Confidence 45689999999999999999999887 444666666443
No 339
>PRK14529 adenylate kinase; Provisional
Probab=97.35 E-value=0.00018 Score=67.48 Aligned_cols=38 Identities=26% Similarity=0.463 Sum_probs=32.3
Q ss_pred EEeecCCCCCHHHHHHHHHHHhCCceEEeecccccccccC
Q 019334 77 LGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAG 116 (342)
Q Consensus 77 lgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~~~G 116 (342)
+.|.||||||||++|+.+|++++++ .+|.++++...+.
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~~~--~is~gdllr~~i~ 40 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYDLA--HIESGAIFREHIG 40 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCC--Ccccchhhhhhcc
Confidence 6778999999999999999999954 5788999876543
No 340
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.34 E-value=0.00065 Score=62.59 Aligned_cols=74 Identities=19% Similarity=0.160 Sum_probs=44.4
Q ss_pred CeEEEeecCCCCCHHHHHHHHH-----HHhCCceEEeec-----ccccc---------cccCCcHHHHHHHHHHHHHhhh
Q 019334 74 PLILGIWGGKGQGKSFQTELIF-----QAMGIEPVIMSA-----GELES---------ERAGEPGKLIRERYRTASQVVQ 134 (342)
Q Consensus 74 PlglgL~GPPG~GKTllaravA-----~~~g~~~i~vs~-----~eL~s---------~~~GEsEr~iR~~F~~A~e~~~ 134 (342)
++.++|.||.|+|||++.|.++ .+.|.....-++ ..++. .+...-...++++- .|...
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~~~la~~G~~v~a~~~~~~~~d~i~~~l~~~~si~~~~S~f~~el~~l~-~~l~~-- 105 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALIVFLAHIGSFVPADSATIGLVDKIFTRMSSRESVSSGQSAFMIDLYQVS-KALRL-- 105 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHHHHHHhCCCeeEcCCcEEeeeeeeeeeeCCccChhhccchHHHHHHHHH-HHHHh--
Confidence 5889999999999999999998 356654322211 11111 11111122233222 22222
Q ss_pred hcCCceEEEeecccccC
Q 019334 135 NQGKMSCLMINDIDAGL 151 (342)
Q Consensus 135 ~~~~PcILfIDEIDAg~ 151 (342)
...|++++|||+-++.
T Consensus 106 -~~~~slvllDE~~~gt 121 (213)
T cd03281 106 -ATRRSLVLIDEFGKGT 121 (213)
T ss_pred -CCCCcEEEeccccCCC
Confidence 4679999999998876
No 341
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=97.34 E-value=0.00041 Score=68.06 Aligned_cols=73 Identities=19% Similarity=0.220 Sum_probs=50.1
Q ss_pred CeEEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccccccC-Cc-----H--HHHHHHHHHHHHhhhhcCCceEEEee
Q 019334 74 PLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAG-EP-----G--KLIRERYRTASQVVQNQGKMSCLMIN 145 (342)
Q Consensus 74 PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~~~G-Es-----E--r~iR~~F~~A~e~~~~~~~PcILfID 145 (342)
...+.|.|+||||||+++++++...+.+++.-.+-+......| +. . ..++..+....+.+ +.++-+||+|
T Consensus 162 ~~~~~~~G~~~~gkstl~~~l~~~~~~~~v~E~~R~~~~~~~~~~~~l~~~d~~~i~~g~~~~~~~~~--~~a~~iif~D 239 (325)
T TIGR01526 162 VKTVAILGGESTGKSTLVNKLAAVFNTTSAWEYAREYVEEKLGGDEALQYSDYAQIALGQQRYIDYAV--RHAHKIAFID 239 (325)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCCCEEeehhHHHHHHhcCCCcccCHHHHHHHHHHHHHHHHHHH--hhcCCeEEEc
Confidence 4578899999999999999999999999988887766654432 21 1 34444443322222 3457899988
Q ss_pred cccc
Q 019334 146 DIDA 149 (342)
Q Consensus 146 EIDA 149 (342)
- +.
T Consensus 240 ~-~~ 242 (325)
T TIGR01526 240 T-DF 242 (325)
T ss_pred C-Ch
Confidence 4 44
No 342
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.34 E-value=0.0011 Score=60.83 Aligned_cols=30 Identities=23% Similarity=0.063 Sum_probs=25.0
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHH-----HHhCCc
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIF-----QAMGIE 101 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA-----~~~g~~ 101 (342)
+....++|.||.|+|||++.+.++ .++|++
T Consensus 27 ~~~~~~~l~G~n~~GKstll~~i~~~~~la~~G~~ 61 (204)
T cd03282 27 GSSRFHIITGPNMSGKSTYLKQIALLAIMAQIGCF 61 (204)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHHHcCCC
Confidence 344789999999999999999997 667764
No 343
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.33 E-value=0.0019 Score=59.88 Aligned_cols=38 Identities=21% Similarity=0.338 Sum_probs=27.4
Q ss_pred CCCCCeEEEeecCCCCCHHHHHHHHHH---HhCCceEEeec
Q 019334 70 NVKVPLILGIWGGKGQGKSFQTELIFQ---AMGIEPVIMSA 107 (342)
Q Consensus 70 ~~k~PlglgL~GPPG~GKTllaravA~---~~g~~~i~vs~ 107 (342)
|+.....++|+||||||||++|-.++. +.|-+.+.++.
T Consensus 17 G~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ 57 (237)
T TIGR03877 17 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVAL 57 (237)
T ss_pred CCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEe
Confidence 444456899999999999999975543 34666666654
No 344
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=97.33 E-value=0.00061 Score=65.52 Aligned_cols=72 Identities=19% Similarity=0.239 Sum_probs=44.5
Q ss_pred EEEeecCCCCCHHHHHHHHHHH---hCCceEEeeccccc--c-cc-cCCcHHHHHHHHHHHHHhhhhcCCceEEEeeccc
Q 019334 76 ILGIWGGKGQGKSFQTELIFQA---MGIEPVIMSAGELE--S-ER-AGEPGKLIRERYRTASQVVQNQGKMSCLMINDID 148 (342)
Q Consensus 76 glgL~GPPG~GKTllaravA~~---~g~~~i~vs~~eL~--s-~~-~GEsEr~iR~~F~~A~e~~~~~~~PcILfIDEID 148 (342)
.|+|+|.||+|||++|+.++.. .+...+.++-.++. . .| --..||.+|..++.+.+-. -++-.|+++|+.=
T Consensus 3 Liil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v~r~--ls~~~iVI~Dd~n 80 (270)
T PF08433_consen 3 LIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDRNDYADSKKEKEARGSLKSAVERA--LSKDTIVILDDNN 80 (270)
T ss_dssp EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TTSSS--GGGHHHHHHHHHHHHHHH--HTT-SEEEE-S--
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccchhhhhchhhhHHHHHHHHHHHHHh--hccCeEEEEeCCc
Confidence 4678899999999999999875 56777788865554 1 12 2445999999988776543 2445788888765
Q ss_pred c
Q 019334 149 A 149 (342)
Q Consensus 149 A 149 (342)
-
T Consensus 81 Y 81 (270)
T PF08433_consen 81 Y 81 (270)
T ss_dssp -
T ss_pred h
Confidence 3
No 345
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=97.33 E-value=0.00023 Score=61.09 Aligned_cols=29 Identities=21% Similarity=0.435 Sum_probs=26.3
Q ss_pred EEEeecCCCCCHHHHHHHHHHHhCCceEE
Q 019334 76 ILGIWGGKGQGKSFQTELIFQAMGIEPVI 104 (342)
Q Consensus 76 glgL~GPPG~GKTllaravA~~~g~~~i~ 104 (342)
+++|.|+||+|||++|+.+|+++|.+++.
T Consensus 2 iI~i~G~~GSGKstia~~la~~lg~~~~~ 30 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKLSLKLIS 30 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCceec
Confidence 68999999999999999999999988654
No 346
>PRK07667 uridine kinase; Provisional
Probab=97.32 E-value=0.0006 Score=61.46 Aligned_cols=39 Identities=28% Similarity=0.281 Sum_probs=32.6
Q ss_pred CeEEEeecCCCCCHHHHHHHHHHHh---CCceEEeecccccc
Q 019334 74 PLILGIWGGKGQGKSFQTELIFQAM---GIEPVIMSAGELES 112 (342)
Q Consensus 74 PlglgL~GPPG~GKTllaravA~~~---g~~~i~vs~~eL~s 112 (342)
+++|+|.|+||+|||++|+.++..+ |.+...++..+.+.
T Consensus 17 ~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~~~ 58 (193)
T PRK07667 17 RFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDYIV 58 (193)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcccc
Confidence 4899999999999999999999876 45777777777653
No 347
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.31 E-value=0.00023 Score=61.32 Aligned_cols=76 Identities=18% Similarity=0.187 Sum_probs=45.8
Q ss_pred CCCCeEEEeecCCCCCHHHHHHHHHHHhCCc--eEEeecccccccccC-CcHHHHHHHHHHHHHhhhhcCCceEEEeecc
Q 019334 71 VKVPLILGIWGGKGQGKSFQTELIFQAMGIE--PVIMSAGELESERAG-EPGKLIRERYRTASQVVQNQGKMSCLMINDI 147 (342)
Q Consensus 71 ~k~PlglgL~GPPG~GKTllaravA~~~g~~--~i~vs~~eL~s~~~G-EsEr~iR~~F~~A~e~~~~~~~PcILfIDEI 147 (342)
++.--.++|-||+|||||++.+++++..... -|.+.+.. .-.|+- =|.-. +++..-|+..+ ..|.+|++||-
T Consensus 23 ~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~-~i~~~~~lS~G~-~~rv~laral~---~~p~illlDEP 97 (144)
T cd03221 23 INPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTV-KIGYFEQLSGGE-KMRLALAKLLL---ENPNLLLLDEP 97 (144)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeE-EEEEEccCCHHH-HHHHHHHHHHh---cCCCEEEEeCC
Confidence 3445689999999999999999999865320 11111100 000100 11112 23444566554 47999999999
Q ss_pred cccC
Q 019334 148 DAGL 151 (342)
Q Consensus 148 DAg~ 151 (342)
.+++
T Consensus 98 ~~~L 101 (144)
T cd03221 98 TNHL 101 (144)
T ss_pred ccCC
Confidence 9887
No 348
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=97.31 E-value=0.001 Score=59.59 Aligned_cols=36 Identities=19% Similarity=0.282 Sum_probs=32.0
Q ss_pred EEEeecCCCCCHHHHHHHHHHHhCCceEEeeccccc
Q 019334 76 ILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELE 111 (342)
Q Consensus 76 glgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~ 111 (342)
.++|.||||+|||.+|+.++.+++.+.+.++.+...
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~~~ 38 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATAQPF 38 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCCCC
Confidence 589999999999999999999999888888877654
No 349
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.31 E-value=0.00078 Score=59.02 Aligned_cols=38 Identities=16% Similarity=0.325 Sum_probs=30.1
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHhCC---ceEEeeccc
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQAMGI---EPVIMSAGE 109 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~~g~---~~i~vs~~e 109 (342)
..|..+.+.||||||||+++++++..+.. ..+.+++..
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~ 45 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDE 45 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHH
Confidence 46788999999999999999999998862 345555433
No 350
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=97.30 E-value=0.0003 Score=63.35 Aligned_cols=43 Identities=26% Similarity=0.360 Sum_probs=34.1
Q ss_pred CCCCeEEEeecCCCCCHHHHHHHHHHHh-CCceEEeeccccccc
Q 019334 71 VKVPLILGIWGGKGQGKSFQTELIFQAM-GIEPVIMSAGELESE 113 (342)
Q Consensus 71 ~k~PlglgL~GPPG~GKTllaravA~~~-g~~~i~vs~~eL~s~ 113 (342)
-..|..++|.||||||||++++.+..++ +-.++.+++.++-..
T Consensus 12 ~~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~~ 55 (199)
T PF06414_consen 12 QEKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQF 55 (199)
T ss_dssp -SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGGG
T ss_pred ccCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHHh
Confidence 4789999999999999999999999999 888999998877543
No 351
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.30 E-value=0.00026 Score=62.22 Aligned_cols=25 Identities=28% Similarity=0.247 Sum_probs=17.5
Q ss_pred CeEEEeecCCCCCHHHHHHHHHHHh
Q 019334 74 PLILGIWGGKGQGKSFQTELIFQAM 98 (342)
Q Consensus 74 PlglgL~GPPG~GKTllaravA~~~ 98 (342)
+...+|+||||||||+++..++..+
T Consensus 17 ~~~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 17 NGITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp SE-EEEE-STTSSHHHHHHHHHHHH
T ss_pred CCCEEEECCCCCChHHHHHHHHHHh
Confidence 3379999999999997665555555
No 352
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=97.29 E-value=0.00026 Score=64.93 Aligned_cols=37 Identities=24% Similarity=0.186 Sum_probs=30.8
Q ss_pred CCeEEEeecCCCCCHHHHHHHHHHHhCCceEEeeccccc
Q 019334 73 VPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELE 111 (342)
Q Consensus 73 ~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~ 111 (342)
-|..++|.|+||+|||++|+.+|.++|+.. +..++++
T Consensus 2 ~~~~i~i~G~~G~GKst~a~~l~~~~~~~~--~~~~D~~ 38 (197)
T PRK12339 2 ESTIHFIGGIPGVGKTSISGYIARHRAIDI--VLSGDYL 38 (197)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCeE--EehhHHH
Confidence 367899999999999999999999998754 5555554
No 353
>PRK00300 gmk guanylate kinase; Provisional
Probab=97.29 E-value=0.0012 Score=58.95 Aligned_cols=28 Identities=21% Similarity=0.310 Sum_probs=25.1
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHhC
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQAMG 99 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~~g 99 (342)
+....++|.||+|||||++++++++.+.
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 3457899999999999999999999986
No 354
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.27 E-value=0.00066 Score=58.40 Aligned_cols=75 Identities=21% Similarity=0.337 Sum_probs=44.7
Q ss_pred CCeEEEeecCCCCCHHHHHHHHHHHhCCc--eEEeecccccc-------cccC----CcHHHHHHHHHHHHHhhhhcCCc
Q 019334 73 VPLILGIWGGKGQGKSFQTELIFQAMGIE--PVIMSAGELES-------ERAG----EPGKLIRERYRTASQVVQNQGKM 139 (342)
Q Consensus 73 ~PlglgL~GPPG~GKTllaravA~~~g~~--~i~vs~~eL~s-------~~~G----EsEr~iR~~F~~A~e~~~~~~~P 139 (342)
.--.++|.||+|+|||++.++++...... -+.+.+.++.. ..++ =|.-. +++..-|+.++ ..|
T Consensus 24 ~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G~-~~r~~l~~~l~---~~~ 99 (157)
T cd00267 24 AGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQLSGGQ-RQRVALARALL---LNP 99 (157)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEeeCCHHH-HHHHHHHHHHh---cCC
Confidence 33689999999999999999999865431 12222222111 0011 01111 22333444443 469
Q ss_pred eEEEeecccccC
Q 019334 140 SCLMINDIDAGL 151 (342)
Q Consensus 140 cILfIDEIDAg~ 151 (342)
.++++||..+++
T Consensus 100 ~i~ilDEp~~~l 111 (157)
T cd00267 100 DLLLLDEPTSGL 111 (157)
T ss_pred CEEEEeCCCcCC
Confidence 999999999987
No 355
>PRK08356 hypothetical protein; Provisional
Probab=97.27 E-value=0.00036 Score=62.69 Aligned_cols=35 Identities=20% Similarity=0.291 Sum_probs=28.4
Q ss_pred CeEEEeecCCCCCHHHHHHHHHHHhCCceEEeeccccc
Q 019334 74 PLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELE 111 (342)
Q Consensus 74 PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~ 111 (342)
...++|.||||+|||++|+.++ +.|++ +++.++.+
T Consensus 5 ~~~i~~~G~~gsGK~t~a~~l~-~~g~~--~is~~~~~ 39 (195)
T PRK08356 5 KMIVGVVGKIAAGKTTVAKFFE-EKGFC--RVSCSDPL 39 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHH-HCCCc--EEeCCCcc
Confidence 3568999999999999999995 57765 67777654
No 356
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.27 E-value=0.00039 Score=62.72 Aligned_cols=77 Identities=17% Similarity=0.186 Sum_probs=47.5
Q ss_pred CCCCeEEEeecCCCCCHHHHHHHHHHHhCC--ceEEeecccc--cccccCCcHHHHHHHHHHHHHhhhhcCCceEEEeec
Q 019334 71 VKVPLILGIWGGKGQGKSFQTELIFQAMGI--EPVIMSAGEL--ESERAGEPGKLIRERYRTASQVVQNQGKMSCLMIND 146 (342)
Q Consensus 71 ~k~PlglgL~GPPG~GKTllaravA~~~g~--~~i~vs~~eL--~s~~~GEsEr~iR~~F~~A~e~~~~~~~PcILfIDE 146 (342)
++.--.++|-||.|+|||++.+++++.... --|.+.+-.+ ......=|.- -|++..-|+..+ ..|.++++||
T Consensus 22 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LSgG-q~qrv~laral~---~~p~lllLDE 97 (177)
T cd03222 22 VKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLSGG-ELQRVAIAAALL---RNATFYLFDE 97 (177)
T ss_pred ECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCCHH-HHHHHHHHHHHh---cCCCEEEEEC
Confidence 344568999999999999999999976432 1122222111 0000001111 145666666664 4799999999
Q ss_pred ccccC
Q 019334 147 IDAGL 151 (342)
Q Consensus 147 IDAg~ 151 (342)
--+++
T Consensus 98 Pts~L 102 (177)
T cd03222 98 PSAYL 102 (177)
T ss_pred CcccC
Confidence 98876
No 357
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.25 E-value=0.0016 Score=66.81 Aligned_cols=36 Identities=19% Similarity=0.316 Sum_probs=29.0
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHh---CCceEEeec
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQAM---GIEPVIMSA 107 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~~---g~~~i~vs~ 107 (342)
..|..++++||||+|||+.|..+|..+ |..+..++.
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~ 131 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAA 131 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecC
Confidence 458899999999999999999888655 556666655
No 358
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=97.25 E-value=0.0022 Score=58.37 Aligned_cols=38 Identities=13% Similarity=0.184 Sum_probs=26.8
Q ss_pred CCCCCeEEEeecCCCCCHHHHHHHHHHH---hCCceEEeec
Q 019334 70 NVKVPLILGIWGGKGQGKSFQTELIFQA---MGIEPVIMSA 107 (342)
Q Consensus 70 ~~k~PlglgL~GPPG~GKTllaravA~~---~g~~~i~vs~ 107 (342)
|+.....++|.||||||||+++..++.+ -|-+.+.++.
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~ 56 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTT 56 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEc
Confidence 4445568999999999999999876532 3445555553
No 359
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.24 E-value=0.00024 Score=64.22 Aligned_cols=46 Identities=26% Similarity=0.335 Sum_probs=35.5
Q ss_pred EEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccccccCCcHHHHHHHHHHH
Q 019334 76 ILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTA 129 (342)
Q Consensus 76 glgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~~~GEsEr~iR~~F~~A 129 (342)
-++|.|-||||||++|+.+|...|.+.|.|+ ++.. |+++-+-|.+-
T Consensus 9 NILvtGTPG~GKstl~~~lae~~~~~~i~is--d~vk------En~l~~gyDE~ 54 (176)
T KOG3347|consen 9 NILVTGTPGTGKSTLAERLAEKTGLEYIEIS--DLVK------ENNLYEGYDEE 54 (176)
T ss_pred CEEEeCCCCCCchhHHHHHHHHhCCceEehh--hHHh------hhcchhccccc
Confidence 4688999999999999999999998888764 4442 55555555544
No 360
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.24 E-value=0.0006 Score=52.03 Aligned_cols=37 Identities=24% Similarity=0.381 Sum_probs=27.6
Q ss_pred EEeecCCCCCHHHHHHHHHHHh-CCceEEeeccccccc
Q 019334 77 LGIWGGKGQGKSFQTELIFQAM-GIEPVIMSAGELESE 113 (342)
Q Consensus 77 lgL~GPPG~GKTllaravA~~~-g~~~i~vs~~eL~s~ 113 (342)
++|.|+||+|||++++++++.+ +.++..++..=+++.
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l~~~~~~~i~~~~I~eg 39 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQLGGRSVVVLDEIVILEG 39 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCCCEEEEeEEEEecc
Confidence 6788999999999999999995 345555555444433
No 361
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=97.23 E-value=0.00035 Score=62.05 Aligned_cols=38 Identities=34% Similarity=0.613 Sum_probs=30.4
Q ss_pred EEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccccccC
Q 019334 76 ILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAG 116 (342)
Q Consensus 76 glgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~~~G 116 (342)
+++|.|+||||||++++.+++ +|++ ++++.++......
T Consensus 1 ii~itG~~gsGKst~~~~l~~-~g~~--~i~~D~~~~~~~~ 38 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE-LGIP--VIDADKIAHEVYE 38 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH-CCCC--EEecCHHHHhhhh
Confidence 479999999999999999998 7854 5667777765443
No 362
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=97.23 E-value=0.0011 Score=64.44 Aligned_cols=52 Identities=29% Similarity=0.408 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHh--hcCCCCCeEEEeecCCCCCHHHHHHHHHHHhCCceE
Q 019334 52 FMASLLCHIVKNYIAH--LLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPV 103 (342)
Q Consensus 52 f~d~l~~hi~K~~l~~--~~~~k~PlglgL~GPPG~GKTllaravA~~~g~~~i 103 (342)
..++.....+|+|+-= ..+.+.|+++||-|+||+|||++|.-+|.++|+.-+
T Consensus 65 l~~k~~~e~a~rY~lwR~ir~~~~p~IILIGGasGVGkStIA~ElA~rLgI~~v 118 (299)
T COG2074 65 LLEKGDPEVAKRYLLWRRIRKMKRPLIILIGGASGVGKSTIAGELARRLGIRSV 118 (299)
T ss_pred HHHhcCHHHHHHHHHHHHHhccCCCeEEEecCCCCCChhHHHHHHHHHcCCcee
Confidence 3445555556665531 346788999999999999999999999999998644
No 363
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=97.23 E-value=0.00076 Score=62.17 Aligned_cols=30 Identities=30% Similarity=0.345 Sum_probs=26.8
Q ss_pred CCCCeEEEeecCCCCCHHHHHHHHHHHhCC
Q 019334 71 VKVPLILGIWGGKGQGKSFQTELIFQAMGI 100 (342)
Q Consensus 71 ~k~PlglgL~GPPG~GKTllaravA~~~g~ 100 (342)
...|.+++|.||+|+|||++++.++..+..
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~~ 59 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQQ 59 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 457899999999999999999999988754
No 364
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=97.22 E-value=0.00059 Score=63.24 Aligned_cols=43 Identities=23% Similarity=0.340 Sum_probs=34.9
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccccccC
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAG 116 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~~~G 116 (342)
..|..+||.|++|||||+.++.++.++|+++ +++..+......
T Consensus 4 ~~~~~IglTG~iGsGKStv~~~l~~~lg~~v--idaD~i~~~l~~ 46 (204)
T PRK14733 4 INTYPIGITGGIASGKSTATRILKEKLNLNV--VCADTISREITK 46 (204)
T ss_pred CceEEEEEECCCCCCHHHHHHHHHHHcCCeE--EeccHHHHHHHC
Confidence 4578999999999999999999999999874 566666555443
No 365
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.22 E-value=0.0013 Score=59.38 Aligned_cols=39 Identities=15% Similarity=0.226 Sum_probs=29.6
Q ss_pred CCCCCeEEEeecCCCCCHHHHHHHHHHHh---CCceEEeecc
Q 019334 70 NVKVPLILGIWGGKGQGKSFQTELIFQAM---GIEPVIMSAG 108 (342)
Q Consensus 70 ~~k~PlglgL~GPPG~GKTllaravA~~~---g~~~i~vs~~ 108 (342)
|+.....++|+||||||||++|..+|.+. |-+.+.++..
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e 56 (218)
T cd01394 15 GVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTE 56 (218)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 34444669999999999999999998665 4566666654
No 366
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.21 E-value=0.00089 Score=64.80 Aligned_cols=72 Identities=15% Similarity=0.235 Sum_probs=44.8
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHhCC-----ceEEeecccccccccCCcHHHHHH---HHHHHHHhhhhcCCceEEE
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQAMGI-----EPVIMSAGELESERAGEPGKLIRE---RYRTASQVVQNQGKMSCLM 143 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~~g~-----~~i~vs~~eL~s~~~GEsEr~iR~---~F~~A~e~~~~~~~PcILf 143 (342)
..| -++|.||||||||+.+.++|.++=- .++.+++++=- +=-.+|. .|..-+-... .|+--||+
T Consensus 47 nmP-~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeR------GIDvVRn~IK~FAQ~kv~lp-~grhKIiI 118 (333)
T KOG0991|consen 47 NMP-NLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDER------GIDVVRNKIKMFAQKKVTLP-PGRHKIII 118 (333)
T ss_pred CCC-ceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCcccc------ccHHHHHHHHHHHHhhccCC-CCceeEEE
Confidence 344 4678999999999999999987632 35556655311 1122333 4433322111 26667999
Q ss_pred eecccccC
Q 019334 144 INDIDAGL 151 (342)
Q Consensus 144 IDEIDAg~ 151 (342)
+||.|+..
T Consensus 119 LDEADSMT 126 (333)
T KOG0991|consen 119 LDEADSMT 126 (333)
T ss_pred eeccchhh
Confidence 99999854
No 367
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.21 E-value=0.0021 Score=58.38 Aligned_cols=81 Identities=12% Similarity=0.167 Sum_probs=48.8
Q ss_pred CCCCCeEEEeecCCCCCHHHHHHHHHHHh---------CCceEEeeccccccc-c-----------------------cC
Q 019334 70 NVKVPLILGIWGGKGQGKSFQTELIFQAM---------GIEPVIMSAGELESE-R-----------------------AG 116 (342)
Q Consensus 70 ~~k~PlglgL~GPPG~GKTllaravA~~~---------g~~~i~vs~~eL~s~-~-----------------------~G 116 (342)
|+..-..+.|+||||||||++|..+|... +-..+.++..+-++. . .-
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~ 94 (235)
T cd01123 15 GIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQIAERFGLDPEEVLDNIYVARAY 94 (235)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHHHHHHhccChHhHhcCEEEEecC
Confidence 34445689999999999999999988553 245566665442110 0 00
Q ss_pred CcHHHHHHHHHHHHHhhhhcCCceEEEeecccccC
Q 019334 117 EPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGL 151 (342)
Q Consensus 117 EsEr~iR~~F~~A~e~~~~~~~PcILfIDEIDAg~ 151 (342)
+.+ .+.+.+....+......+|++|+||-|.+..
T Consensus 95 ~~~-~l~~~l~~l~~~l~~~~~~~liVIDSis~~~ 128 (235)
T cd01123 95 NSD-HQLQLLEELEAILIESSRIKLVIVDSVTALF 128 (235)
T ss_pred CHH-HHHHHHHHHHHHHhhcCCeeEEEEeCcHHHH
Confidence 111 1222333333344322389999999999865
No 368
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=97.20 E-value=0.00045 Score=54.62 Aligned_cols=24 Identities=17% Similarity=0.123 Sum_probs=20.7
Q ss_pred EEEeecCCCCCHHHHHHHHHHHhC
Q 019334 76 ILGIWGGKGQGKSFQTELIFQAMG 99 (342)
Q Consensus 76 glgL~GPPG~GKTllaravA~~~g 99 (342)
.++|+||+|+|||+++-+.+.++.
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~ 25 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELL 25 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHH
Confidence 578999999999999988887764
No 369
>PRK12338 hypothetical protein; Provisional
Probab=97.20 E-value=0.0004 Score=68.67 Aligned_cols=38 Identities=18% Similarity=0.295 Sum_probs=31.2
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHhCCceEEeeccccc
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELE 111 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~ 111 (342)
..|..++|.|+||||||++|+++|..+|+.. +..++.+
T Consensus 2 ~~p~ii~i~G~sGsGKST~a~~la~~l~~~~--~~~tD~~ 39 (319)
T PRK12338 2 RKPYVILIGSASGIGKSTIASELARTLNIKH--LIETDFI 39 (319)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHCCCeE--EccChHH
Confidence 4689999999999999999999999999754 4344443
No 370
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.19 E-value=0.0019 Score=62.09 Aligned_cols=87 Identities=16% Similarity=0.161 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCeE-EEeecCCCCCHHHHHHHHHHHhCCceEEeecccccccccCCcHHHHHHHHHHHH
Q 019334 52 FMASLLCHIVKNYIAHLLNVKVPLI-LGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTAS 130 (342)
Q Consensus 52 f~d~l~~hi~K~~l~~~~~~k~Plg-lgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~~~GEsEr~iR~~F~~A~ 130 (342)
|-+-...||+|---. ++-|.| ++|-|++|+||++++|++|--++..++.+....=++ ..+=..-++.++.+|.
T Consensus 12 lf~~ai~hi~ri~Rv----L~~~~Gh~LLvG~~GsGr~sl~rLaa~i~~~~~~~i~~~~~y~--~~~f~~dLk~~~~~ag 85 (268)
T PF12780_consen 12 LFDEAIEHIARISRV----LSQPRGHALLVGVGGSGRQSLARLAAFICGYEVFQIEITKGYS--IKDFKEDLKKALQKAG 85 (268)
T ss_dssp --HHHHHHHHHHHHH----HCSTTEEEEEECTTTSCHHHHHHHHHHHTTEEEE-TTTSTTTH--HHHHHHHHHHHHHHHH
T ss_pred eHHHHHHHHHHHHHH----HcCCCCCeEEecCCCccHHHHHHHHHHHhccceEEEEeeCCcC--HHHHHHHHHHHHHHHh
Confidence 344567788876655 456764 778899999999999999999999999887543221 1111234555555553
Q ss_pred HhhhhcCCceEEEeeccc
Q 019334 131 QVVQNQGKMSCLMINDID 148 (342)
Q Consensus 131 e~~~~~~~PcILfIDEID 148 (342)
.+++|+|++|.|-+
T Consensus 86 ----~~~~~~vfll~d~q 99 (268)
T PF12780_consen 86 ----IKGKPTVFLLTDSQ 99 (268)
T ss_dssp ----CS-S-EEEEEECCC
T ss_pred ----ccCCCeEEEecCcc
Confidence 37899999998854
No 371
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=97.19 E-value=0.0021 Score=63.85 Aligned_cols=52 Identities=21% Similarity=0.252 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHhhcCCCCCeEEEeecCCCCCHHHHHHHHHHHh---CC--ceEEeecccc
Q 019334 56 LLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAM---GI--EPVIMSAGEL 110 (342)
Q Consensus 56 l~~hi~K~~l~~~~~~k~PlglgL~GPPG~GKTllaravA~~~---g~--~~i~vs~~eL 110 (342)
++.++++.+.. ..+.|..|+|.||||+|||+++.+++..+ |. .++.++.++-
T Consensus 41 ~~~~l~~~~~~---~~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~ 97 (332)
T PRK09435 41 LAQELLDALLP---HTGNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSST 97 (332)
T ss_pred HHHHHHHHHhh---cCCCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCcc
Confidence 56667776654 23578999999999999999999876554 43 4444444443
No 372
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.18 E-value=0.00071 Score=71.99 Aligned_cols=44 Identities=27% Similarity=0.232 Sum_probs=33.8
Q ss_pred eEEEeecCCCCCHHHHHHHHHHHhCC-ceEEeecccccccccCCc
Q 019334 75 LILGIWGGKGQGKSFQTELIFQAMGI-EPVIMSAGELESERAGEP 118 (342)
Q Consensus 75 lglgL~GPPG~GKTllaravA~~~g~-~~i~vs~~eL~s~~~GEs 118 (342)
.+++|.||||+|||++|+++|+.+.- ++..+.+++..++...+|
T Consensus 104 ~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~kg~~~~sP~~e~P 148 (644)
T PRK15455 104 QILYLLGPVGGGKSSLAERLKSLMERVPIYVLKANGERSPVNESP 148 (644)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHhCcceeecCCCCCCCCCCCC
Confidence 58999999999999999999987765 455566655555555544
No 373
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=97.17 E-value=0.0011 Score=65.57 Aligned_cols=47 Identities=28% Similarity=0.495 Sum_probs=38.1
Q ss_pred HHHHH-HHHHHHHHHHh-------hcCCCCCeEEEeecCCCCCHHHHHHHHHHHh
Q 019334 52 FMASL-LCHIVKNYIAH-------LLNVKVPLILGIWGGKGQGKSFQTELIFQAM 98 (342)
Q Consensus 52 f~d~l-~~hi~K~~l~~-------~~~~k~PlglgL~GPPG~GKTllaravA~~~ 98 (342)
+.+.+ |+|++|...-. .++.+-|+.+=+||+|||||++.++.||+.+
T Consensus 80 L~~~lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~ 134 (344)
T KOG2170|consen 80 LARALFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENL 134 (344)
T ss_pred HHHHhhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHH
Confidence 44444 78888777654 3567889999999999999999999999865
No 374
>PRK14737 gmk guanylate kinase; Provisional
Probab=97.17 E-value=0.00076 Score=61.09 Aligned_cols=26 Identities=23% Similarity=0.268 Sum_probs=24.0
Q ss_pred CCeEEEeecCCCCCHHHHHHHHHHHh
Q 019334 73 VPLILGIWGGKGQGKSFQTELIFQAM 98 (342)
Q Consensus 73 ~PlglgL~GPPG~GKTllaravA~~~ 98 (342)
.|+.+.|.||+|+|||++++.+.++.
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 57889999999999999999998876
No 375
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.17 E-value=0.00052 Score=62.09 Aligned_cols=29 Identities=34% Similarity=0.653 Sum_probs=25.6
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHhCC
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQAMGI 100 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~~g~ 100 (342)
+.+..++|.||+|||||++++++++.+..
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~ 32 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLGK 32 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 44578999999999999999999998864
No 376
>PRK13808 adenylate kinase; Provisional
Probab=97.17 E-value=0.00029 Score=70.00 Aligned_cols=35 Identities=34% Similarity=0.527 Sum_probs=30.8
Q ss_pred EEeecCCCCCHHHHHHHHHHHhCCceEEeeccccccc
Q 019334 77 LGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESE 113 (342)
Q Consensus 77 lgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~ 113 (342)
|+|+||||+|||++|+.+|..+|+ .+++.++|+..
T Consensus 3 Iiv~GpPGSGK~T~a~~LA~~ygl--~~is~gdlLR~ 37 (333)
T PRK13808 3 LILLGPPGAGKGTQAQRLVQQYGI--VQLSTGDMLRA 37 (333)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCC--ceecccHHHHH
Confidence 778999999999999999999984 77788888854
No 377
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=97.17 E-value=0.00099 Score=57.84 Aligned_cols=46 Identities=28% Similarity=0.359 Sum_probs=32.6
Q ss_pred EEEeecCCCCCHHHHHHHHHHHh---CCceEEeecccccccccCCcHHHHHHHH
Q 019334 76 ILGIWGGKGQGKSFQTELIFQAM---GIEPVIMSAGELESERAGEPGKLIRERY 126 (342)
Q Consensus 76 glgL~GPPG~GKTllaravA~~~---g~~~i~vs~~eL~s~~~GEsEr~iR~~F 126 (342)
.+.|-||+|||||++++++++.+ |..++.+..+. +.+ ..+.+|+.|
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~~~~~~--~~~---~~~~~~~~~ 50 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERLEARGYEVVLTREPG--GTP---IGEAIRELL 50 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCC--CCc---hHHHHHHHH
Confidence 57788999999999999999988 66666555432 222 234555554
No 378
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=97.16 E-value=0.00046 Score=61.30 Aligned_cols=34 Identities=21% Similarity=0.103 Sum_probs=29.7
Q ss_pred CeEEEeecCCCCCHHHHHHHHHHHhCCceEEeec
Q 019334 74 PLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSA 107 (342)
Q Consensus 74 PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~ 107 (342)
+..++|.||+|+|||++++.+|+.+|++++..+.
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~ 37 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQ 37 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCc
Confidence 3458888999999999999999999998877664
No 379
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=97.15 E-value=0.0018 Score=60.23 Aligned_cols=37 Identities=16% Similarity=0.179 Sum_probs=27.0
Q ss_pred CCCCeEEEeecCCCCCHHHHHHHHHHHh----CCceEEeec
Q 019334 71 VKVPLILGIWGGKGQGKSFQTELIFQAM----GIEPVIMSA 107 (342)
Q Consensus 71 ~k~PlglgL~GPPG~GKTllaravA~~~----g~~~i~vs~ 107 (342)
+..-..++|.||||+|||+++..+|..+ |.+++.+|.
T Consensus 27 ~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~ 67 (271)
T cd01122 27 LRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISL 67 (271)
T ss_pred EcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEc
Confidence 3333568899999999999988776553 666666554
No 380
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=97.15 E-value=0.0015 Score=58.42 Aligned_cols=71 Identities=14% Similarity=0.067 Sum_probs=42.1
Q ss_pred EEeecCCCCCHHHHHHHHH-----HHhCCceE--------------EeecccccccccCCcHHHHHHHHHHHHHhhhhcC
Q 019334 77 LGIWGGKGQGKSFQTELIF-----QAMGIEPV--------------IMSAGELESERAGEPGKLIRERYRTASQVVQNQG 137 (342)
Q Consensus 77 lgL~GPPG~GKTllaravA-----~~~g~~~i--------------~vs~~eL~s~~~GEsEr~iR~~F~~A~e~~~~~~ 137 (342)
++|.||.|+|||++.|.++ .++|...- .+...+-.....+.=.+-+++ +..+... ..
T Consensus 2 ~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~a~~~~~~~~d~il~~~~~~d~~~~~~s~fs~~~~~-l~~~l~~---~~ 77 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPAESAELPVFDRIFTRIGASDSLAQGLSTFMVEMKE-TANILKN---AT 77 (185)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHHHhCCCeeehheEecccceEEEEeCCCCchhccccHHHHHHHH-HHHHHHh---CC
Confidence 6799999999999999999 56665321 111122121112222223332 2222221 35
Q ss_pred CceEEEeecccccC
Q 019334 138 KMSCLMINDIDAGL 151 (342)
Q Consensus 138 ~PcILfIDEIDAg~ 151 (342)
.|+++++||+-++.
T Consensus 78 ~~~llllDEp~~g~ 91 (185)
T smart00534 78 ENSLVLLDELGRGT 91 (185)
T ss_pred CCeEEEEecCCCCC
Confidence 79999999999886
No 381
>PF13245 AAA_19: Part of AAA domain
Probab=97.14 E-value=0.00072 Score=53.25 Aligned_cols=35 Identities=17% Similarity=0.316 Sum_probs=24.7
Q ss_pred CeEEEeecCCCCCHH-HHHHHHHHHh------CCceEEeecc
Q 019334 74 PLILGIWGGKGQGKS-FQTELIFQAM------GIEPVIMSAG 108 (342)
Q Consensus 74 PlglgL~GPPG~GKT-llaravA~~~------g~~~i~vs~~ 108 (342)
+..+.|.|||||||| +++++++... +-.++.++..
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t 51 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPT 51 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCC
Confidence 345777999999999 6777777666 4455555543
No 382
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.13 E-value=0.0023 Score=57.26 Aligned_cols=27 Identities=22% Similarity=0.342 Sum_probs=23.2
Q ss_pred CCCCeEEEeecCCCCCHHHHHHHHHHH
Q 019334 71 VKVPLILGIWGGKGQGKSFQTELIFQA 97 (342)
Q Consensus 71 ~k~PlglgL~GPPG~GKTllaravA~~ 97 (342)
++.--.++|-||+|||||++.++++..
T Consensus 30 i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 30 VKPGTLTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred EeCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 444568999999999999999999963
No 383
>PRK09354 recA recombinase A; Provisional
Probab=97.13 E-value=0.004 Score=62.35 Aligned_cols=77 Identities=17% Similarity=0.295 Sum_probs=49.1
Q ss_pred CCC--eEEEeecCCCCCHHHHHHHHHH---HhCCceEEeeccc----------------ccccccCCcHHHHHHHHHHHH
Q 019334 72 KVP--LILGIWGGKGQGKSFQTELIFQ---AMGIEPVIMSAGE----------------LESERAGEPGKLIRERYRTAS 130 (342)
Q Consensus 72 k~P--lglgL~GPPG~GKTllaravA~---~~g~~~i~vs~~e----------------L~s~~~GEsEr~iR~~F~~A~ 130 (342)
..| .++.|+||||||||++|-.++. ..|-..+-++..+ |+-...-..| +.+..+.
T Consensus 56 Gip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~E----q~l~i~~ 131 (349)
T PRK09354 56 GLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGE----QALEIAD 131 (349)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHH----HHHHHHH
Confidence 455 5788999999999999976553 3465666666544 1111111122 2333444
Q ss_pred HhhhhcCCceEEEeecccccCCC
Q 019334 131 QVVQNQGKMSCLMINDIDAGLGR 153 (342)
Q Consensus 131 e~~~~~~~PcILfIDEIDAg~~r 153 (342)
..++ ++++.+|+||=|-+..++
T Consensus 132 ~li~-s~~~~lIVIDSvaaL~~~ 153 (349)
T PRK09354 132 TLVR-SGAVDLIVVDSVAALVPK 153 (349)
T ss_pred HHhh-cCCCCEEEEeChhhhcch
Confidence 4444 688999999999998764
No 384
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=97.13 E-value=0.0021 Score=57.58 Aligned_cols=66 Identities=20% Similarity=0.283 Sum_probs=45.4
Q ss_pred CeEEEeecCCCCCHHHHHHHHHHHh---CCceEEeeccccccccc---CCc----HHHHHHHHHHHHHhhhhcCCce
Q 019334 74 PLILGIWGGKGQGKSFQTELIFQAM---GIEPVIMSAGELESERA---GEP----GKLIRERYRTASQVVQNQGKMS 140 (342)
Q Consensus 74 PlglgL~GPPG~GKTllaravA~~~---g~~~i~vs~~eL~s~~~---GEs----Er~iR~~F~~A~e~~~~~~~Pc 140 (342)
|..|.|.|.||+|||++|+++.+.+ |.+.+.+++.++-..+. |-+ +.++|.+-..|..++. +|.-+
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~~l~~dl~fs~~dR~e~~rr~~~~A~ll~~-~G~iv 77 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRHGLNADLGFSKEDREENIRRIAEVAKLLAD-QGIIV 77 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCTTTTTT--SSHHHHHHHHHHHHHHHHHHHH-TTSEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhhccCCCCCCCHHHHHHHHHHHHHHHHHHHh-CCCeE
Confidence 6789999999999999999999765 88999999988876543 333 3455555555554443 44433
No 385
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=97.13 E-value=0.0034 Score=55.08 Aligned_cols=77 Identities=18% Similarity=0.142 Sum_probs=46.5
Q ss_pred CCCCeEEEeecCCCCCHHHHHHHHHHHhCCc----------eEEeeccc--cccc---------ccC-CcHHHHHHHHHH
Q 019334 71 VKVPLILGIWGGKGQGKSFQTELIFQAMGIE----------PVIMSAGE--LESE---------RAG-EPGKLIRERYRT 128 (342)
Q Consensus 71 ~k~PlglgL~GPPG~GKTllaravA~~~g~~----------~i~vs~~e--L~s~---------~~G-EsEr~iR~~F~~ 128 (342)
+..--.++|-||.|||||++++++++..... -+..-..+ +.+. +.. =|.. -+++..-
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~LS~G-~~~rv~l 102 (166)
T cd03223 24 IKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYPWDDVLSGG-EQQRLAF 102 (166)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccccccHHHHhhccCCCCCCHH-HHHHHHH
Confidence 4445689999999999999999999875320 01111111 1100 000 1111 1345555
Q ss_pred HHHhhhhcCCceEEEeecccccC
Q 019334 129 ASQVVQNQGKMSCLMINDIDAGL 151 (342)
Q Consensus 129 A~e~~~~~~~PcILfIDEIDAg~ 151 (342)
|+.++ ..|.+|++||-.++.
T Consensus 103 aral~---~~p~~lllDEPt~~L 122 (166)
T cd03223 103 ARLLL---HKPKFVFLDEATSAL 122 (166)
T ss_pred HHHHH---cCCCEEEEECCcccc
Confidence 66554 579999999999877
No 386
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=97.13 E-value=0.0033 Score=59.52 Aligned_cols=38 Identities=18% Similarity=0.236 Sum_probs=26.6
Q ss_pred CCCCCeEEEeecCCCCCHHHHHHHHHHH---hCCceEEeec
Q 019334 70 NVKVPLILGIWGGKGQGKSFQTELIFQA---MGIEPVIMSA 107 (342)
Q Consensus 70 ~~k~PlglgL~GPPG~GKTllaravA~~---~g~~~i~vs~ 107 (342)
|+.....++|+||||||||++|-.+|.+ .|-+.+.++.
T Consensus 32 Gip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~ 72 (259)
T TIGR03878 32 GIPAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTV 72 (259)
T ss_pred CeECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 3334467999999999999999876643 3445555543
No 387
>PF14516 AAA_35: AAA-like domain
Probab=97.13 E-value=0.021 Score=56.02 Aligned_cols=79 Identities=16% Similarity=0.208 Sum_probs=51.8
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHh---CCceEEeecccccccccCCcHHHH--------------------------
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQAM---GIEPVIMSAGELESERAGEPGKLI-------------------------- 122 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~~---g~~~i~vs~~eL~s~~~GEsEr~i-------------------------- 122 (342)
++..-+.|+||..+|||++...+.+.+ |...+.++-..+-+...-..++.+
T Consensus 29 ~~G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~ 108 (331)
T PF14516_consen 29 QPGSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEIG 108 (331)
T ss_pred cCCCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhcC
Confidence 456788999999999999998876444 777777777655443222222222
Q ss_pred -----HHHHHHHHHhhhhcCCceEEEeecccccCC
Q 019334 123 -----RERYRTASQVVQNQGKMSCLMINDIDAGLG 152 (342)
Q Consensus 123 -----R~~F~~A~e~~~~~~~PcILfIDEIDAg~~ 152 (342)
..-|++- ..+...+|=||||||||++..
T Consensus 109 ~~~~~~~~~~~~--ll~~~~~~lVL~iDEiD~l~~ 141 (331)
T PF14516_consen 109 SKISCTEYFEEY--LLKQIDKPLVLFIDEIDRLFE 141 (331)
T ss_pred ChhhHHHHHHHH--HHhcCCCCEEEEEechhhhcc
Confidence 2222221 112236899999999999874
No 388
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=97.13 E-value=0.0017 Score=57.04 Aligned_cols=27 Identities=33% Similarity=0.391 Sum_probs=23.2
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHh
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQAM 98 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~~ 98 (342)
+.--.++|.||.|||||++.++++...
T Consensus 26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 26 EPGESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 344579999999999999999999864
No 389
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=97.12 E-value=0.00038 Score=63.61 Aligned_cols=35 Identities=20% Similarity=0.303 Sum_probs=27.5
Q ss_pred EEEeecCCCCCHHHHHHHHHHHh-CCceEEeecccccc
Q 019334 76 ILGIWGGKGQGKSFQTELIFQAM-GIEPVIMSAGELES 112 (342)
Q Consensus 76 glgL~GPPG~GKTllaravA~~~-g~~~i~vs~~eL~s 112 (342)
+++|.|+||||||++|+.+++.+ ++.+ ++..+++.
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~~~~~~--i~~Ddf~~ 36 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRILPNCCV--IHQDDFFK 36 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCCeE--EccccccC
Confidence 47899999999999999999998 4544 44445553
No 390
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=97.12 E-value=0.00076 Score=61.69 Aligned_cols=40 Identities=33% Similarity=0.562 Sum_probs=31.2
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccccc
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESER 114 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~~ 114 (342)
+.|..++|.|++|||||++++.++. +|++++. +.++....
T Consensus 3 ~~~~~igitG~igsGKSt~~~~l~~-~g~~v~d--~D~i~~~~ 42 (208)
T PRK14731 3 SLPFLVGVTGGIGSGKSTVCRFLAE-MGCELFE--ADRVAKEL 42 (208)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH-CCCeEEe--ccHHHHHH
Confidence 5678999999999999999999885 8876654 44444443
No 391
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.12 E-value=0.0027 Score=55.68 Aligned_cols=29 Identities=28% Similarity=0.354 Sum_probs=24.5
Q ss_pred CCCCeEEEeecCCCCCHHHHHHHHHHHhC
Q 019334 71 VKVPLILGIWGGKGQGKSFQTELIFQAMG 99 (342)
Q Consensus 71 ~k~PlglgL~GPPG~GKTllaravA~~~g 99 (342)
+..--.++|.||+|+|||++.+++++...
T Consensus 25 i~~G~~~~l~G~nGsGKstLl~~i~G~~~ 53 (171)
T cd03228 25 IKPGEKVAIVGPSGSGKSTLLKLLLRLYD 53 (171)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 34446899999999999999999998753
No 392
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=97.10 E-value=0.00041 Score=62.15 Aligned_cols=25 Identities=32% Similarity=0.485 Sum_probs=23.3
Q ss_pred EEEeecCCCCCHHHHHHHHHHHhCC
Q 019334 76 ILGIWGGKGQGKSFQTELIFQAMGI 100 (342)
Q Consensus 76 glgL~GPPG~GKTllaravA~~~g~ 100 (342)
+|+|.||||+|||++|+.++..++.
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~ 25 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNK 25 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCc
Confidence 5899999999999999999999973
No 393
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=97.10 E-value=0.0011 Score=68.52 Aligned_cols=120 Identities=18% Similarity=0.194 Sum_probs=71.8
Q ss_pred CCeEEEeecCCCCCHHHHHHHHHHHhC---CceEEeecccccc-----cccC--------CcHHHHHHHHHHHHHhhhhc
Q 019334 73 VPLILGIWGGKGQGKSFQTELIFQAMG---IEPVIMSAGELES-----ERAG--------EPGKLIRERYRTASQVVQNQ 136 (342)
Q Consensus 73 ~PlglgL~GPPG~GKTllaravA~~~g---~~~i~vs~~eL~s-----~~~G--------EsEr~iR~~F~~A~e~~~~~ 136 (342)
...-|+|+|.+||||-+.||+|-.... -|||.|+++.+=. ...| ...+. --.|+.|-
T Consensus 163 s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l~ESELFGhekGAFTGA~~~r-~G~fE~A~------ 235 (464)
T COG2204 163 SDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENLLESELFGHEKGAFTGAITRR-IGRFEQAN------ 235 (464)
T ss_pred CCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHHHHHHhhcccccCcCCccccc-CcceeEcC------
Confidence 346699999999999999999986554 5999999975531 1222 11111 11343332
Q ss_pred CCceEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCCccCCCCCCC
Q 019334 137 GKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGR 216 (342)
Q Consensus 137 ~~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~~~LdpaLlRpGR 216 (342)
=-.||+|||-..-- .++.-||-.+..-+.=-++|. ....-.|=||+|||+. | ..++-.||
T Consensus 236 --GGTLfLDEI~~mpl------------~~Q~kLLRvLqe~~~~rvG~~---~~i~vdvRiIaaT~~d--L-~~~v~~G~ 295 (464)
T COG2204 236 --GGTLFLDEIGEMPL------------ELQVKLLRVLQEREFERVGGN---KPIKVDVRIIAATNRD--L-EEEVAAGR 295 (464)
T ss_pred --CceEEeeccccCCH------------HHHHHHHHHHHcCeeEecCCC---cccceeeEEEeecCcC--H-HHHHHcCC
Confidence 35899999987531 133344443331110012220 1113467899999983 3 35888999
Q ss_pred Ccc
Q 019334 217 MEK 219 (342)
Q Consensus 217 fD~ 219 (342)
|=+
T Consensus 296 FRe 298 (464)
T COG2204 296 FRE 298 (464)
T ss_pred cHH
Confidence 976
No 394
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.10 E-value=0.00041 Score=56.08 Aligned_cols=22 Identities=27% Similarity=0.440 Sum_probs=21.1
Q ss_pred EEeecCCCCCHHHHHHHHHHHh
Q 019334 77 LGIWGGKGQGKSFQTELIFQAM 98 (342)
Q Consensus 77 lgL~GPPG~GKTllaravA~~~ 98 (342)
|+|.|+||+|||++|+.+++++
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999998
No 395
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=97.10 E-value=0.0017 Score=59.15 Aligned_cols=38 Identities=18% Similarity=0.151 Sum_probs=26.7
Q ss_pred CCCCCeEEEeecCCCCCHHHHHHHHHHHh----CCceEEeec
Q 019334 70 NVKVPLILGIWGGKGQGKSFQTELIFQAM----GIEPVIMSA 107 (342)
Q Consensus 70 ~~k~PlglgL~GPPG~GKTllaravA~~~----g~~~i~vs~ 107 (342)
|+.....++|.||||+|||++|...+.+. |-+.+.++.
T Consensus 15 Gip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ 56 (226)
T PF06745_consen 15 GIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSF 56 (226)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEES
T ss_pred CCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEe
Confidence 44445689999999999999998655322 777766665
No 396
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=97.09 E-value=0.00023 Score=73.59 Aligned_cols=46 Identities=20% Similarity=0.070 Sum_probs=38.0
Q ss_pred cHHHHHHHHHHHHHHHHHhhcCCCCCeEEEeecCCCCCHHHHHHHHHH
Q 019334 49 APVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQ 96 (342)
Q Consensus 49 ~~~f~d~l~~hi~K~~l~~~~~~k~PlglgL~GPPG~GKTllaravA~ 96 (342)
.++|.|+.+..-+|..+.-.. -.=..++++|||||||||+|+-+..
T Consensus 175 ~~D~~DV~GQ~~AKrAleiAA--AGgHnLl~~GpPGtGKTmla~Rl~~ 220 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIAA--AGGHNLLLVGPPGTGKTMLASRLPG 220 (490)
T ss_pred CcchhhhcCcHHHHHHHHHHH--hcCCcEEEecCCCCchHHhhhhhcc
Confidence 679999999999999997422 2336899999999999999976653
No 397
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.09 E-value=0.0025 Score=59.45 Aligned_cols=37 Identities=19% Similarity=0.198 Sum_probs=26.0
Q ss_pred CCCCeEEEeecCCCCCHHHHHHHHHH-H--hCCceEEeec
Q 019334 71 VKVPLILGIWGGKGQGKSFQTELIFQ-A--MGIEPVIMSA 107 (342)
Q Consensus 71 ~k~PlglgL~GPPG~GKTllaravA~-~--~g~~~i~vs~ 107 (342)
+.....++|.||||||||++|..++. - -|-..+.++.
T Consensus 21 i~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~ 60 (230)
T PRK08533 21 IPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVST 60 (230)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 33346899999999999999755443 2 3556666654
No 398
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.08 E-value=0.00079 Score=60.07 Aligned_cols=37 Identities=38% Similarity=0.588 Sum_probs=28.1
Q ss_pred EEEeecCCCCCHHHHHHHHHHHhC-CceEEeecccccc
Q 019334 76 ILGIWGGKGQGKSFQTELIFQAMG-IEPVIMSAGELES 112 (342)
Q Consensus 76 glgL~GPPG~GKTllaravA~~~g-~~~i~vs~~eL~s 112 (342)
+++|.||+|||||+++++++..++ -....++..+++.
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D~~~~ 38 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDSYYK 38 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCCCeEEEEeccccc
Confidence 479999999999999999999873 2344555555543
No 399
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=97.07 E-value=0.00087 Score=60.57 Aligned_cols=39 Identities=33% Similarity=0.577 Sum_probs=31.7
Q ss_pred CeEEEeecCCCCCHHHHHHHHHHHhCCceEEeeccccccccc
Q 019334 74 PLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERA 115 (342)
Q Consensus 74 PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~~~ 115 (342)
+..++|.||+|||||++++.++. +|++ .+++.++.....
T Consensus 2 ~~~i~ltG~~gsGKst~~~~l~~-~g~~--~i~~D~~~~~~~ 40 (194)
T PRK00081 2 MLIIGLTGGIGSGKSTVANLFAE-LGAP--VIDADAIAHEVV 40 (194)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH-cCCE--EEEecHHHHHHh
Confidence 46799999999999999999988 8864 566777776544
No 400
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.07 E-value=0.0024 Score=57.07 Aligned_cols=72 Identities=15% Similarity=0.237 Sum_probs=44.1
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHhCC--ceEEeec-cccccc---cc----------CCcHHHHHHHHHHHHHhhhh
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQAMGI--EPVIMSA-GELESE---RA----------GEPGKLIRERYRTASQVVQN 135 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~~g~--~~i~vs~-~eL~s~---~~----------GEsEr~iR~~F~~A~e~~~~ 135 (342)
+....++|.||+|+|||++.++++....- ..+.+.. .|+... ++ +.++..+.+..+.+.
T Consensus 23 ~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l----- 97 (186)
T cd01130 23 EARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLRSAL----- 97 (186)
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHHHHh-----
Confidence 34578999999999999999999987642 2233322 122111 10 122334444444443
Q ss_pred cCCceEEEeeccc
Q 019334 136 QGKMSCLMINDID 148 (342)
Q Consensus 136 ~~~PcILfIDEID 148 (342)
+..|.+|+++||-
T Consensus 98 R~~pd~i~igEir 110 (186)
T cd01130 98 RMRPDRIIVGEVR 110 (186)
T ss_pred ccCCCEEEEEccC
Confidence 3569999999984
No 401
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=97.07 E-value=0.00088 Score=61.06 Aligned_cols=30 Identities=20% Similarity=0.204 Sum_probs=26.3
Q ss_pred EEeecCCCCCHHHHHHHHHHHhCCceEEee
Q 019334 77 LGIWGGKGQGKSFQTELIFQAMGIEPVIMS 106 (342)
Q Consensus 77 lgL~GPPG~GKTllaravA~~~g~~~i~vs 106 (342)
+.|.|++|+|||++.+++|+.++.+|+=++
T Consensus 5 IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D 34 (172)
T COG0703 5 IVLIGFMGAGKSTIGRALAKALNLPFIDTD 34 (172)
T ss_pred EEEEcCCCCCHhHHHHHHHHHcCCCcccch
Confidence 556699999999999999999999997543
No 402
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.06 E-value=0.0019 Score=56.31 Aligned_cols=33 Identities=18% Similarity=0.318 Sum_probs=26.1
Q ss_pred EEEeecCCCCCHHHHHHHHHHHh---CCceEEeecc
Q 019334 76 ILGIWGGKGQGKSFQTELIFQAM---GIEPVIMSAG 108 (342)
Q Consensus 76 glgL~GPPG~GKTllaravA~~~---g~~~i~vs~~ 108 (342)
++++.||||+|||+++..+|..+ |..++.++..
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D 37 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAAD 37 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcC
Confidence 57889999999999999988765 6666666643
No 403
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=97.04 E-value=0.0027 Score=56.11 Aligned_cols=28 Identities=29% Similarity=0.427 Sum_probs=23.9
Q ss_pred CCCCeEEEeecCCCCCHHHHHHHHHHHh
Q 019334 71 VKVPLILGIWGGKGQGKSFQTELIFQAM 98 (342)
Q Consensus 71 ~k~PlglgL~GPPG~GKTllaravA~~~ 98 (342)
++.--.++|.||+|+|||++.+++++..
T Consensus 22 i~~G~~~~l~G~nGsGKStLl~~i~G~~ 49 (180)
T cd03214 22 IEAGEIVGILGPNGAGKSTLLKTLAGLL 49 (180)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3444689999999999999999999864
No 404
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=97.04 E-value=0.0027 Score=55.89 Aligned_cols=29 Identities=24% Similarity=0.329 Sum_probs=24.6
Q ss_pred CCCCeEEEeecCCCCCHHHHHHHHHHHhC
Q 019334 71 VKVPLILGIWGGKGQGKSFQTELIFQAMG 99 (342)
Q Consensus 71 ~k~PlglgL~GPPG~GKTllaravA~~~g 99 (342)
+...-.++|.||+|||||++++++++...
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~~l~G~~~ 53 (178)
T cd03247 25 LKQGEKIALLGRSGSGKSTLLQLLTGDLK 53 (178)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 44556899999999999999999997753
No 405
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=97.04 E-value=0.0041 Score=57.46 Aligned_cols=75 Identities=21% Similarity=0.233 Sum_probs=42.1
Q ss_pred eEEEeecCCCCCHHHHHHHHHH-----HhCCceEE----eec-cccccc-------ccCCcHHHHHHHHHHHHHhhhhcC
Q 019334 75 LILGIWGGKGQGKSFQTELIFQ-----AMGIEPVI----MSA-GELESE-------RAGEPGKLIRERYRTASQVVQNQG 137 (342)
Q Consensus 75 lglgL~GPPG~GKTllaravA~-----~~g~~~i~----vs~-~eL~s~-------~~GEsEr~iR~~F~~A~e~~~~~~ 137 (342)
..++|.||.|+|||++.|.++. +.|..+-. +.- ..++.. -.|+|-. ..++.+-+ .++....
T Consensus 31 ~~~~l~Gpn~sGKstllr~i~~~~~l~~~g~~vp~~~~~i~~~~~i~~~~~~~~~ls~g~s~f-~~e~~~l~-~~l~~~~ 108 (216)
T cd03284 31 QILLITGPNMAGKSTYLRQVALIALLAQIGSFVPASKAEIGVVDRIFTRIGASDDLAGGRSTF-MVEMVETA-NILNNAT 108 (216)
T ss_pred eEEEEECCCCCChHHHHHHHHHHHHHhccCCeeccccceecceeeEeccCCchhhhccCcchH-HHHHHHHH-HHHHhCC
Confidence 7789999999999999999963 44432110 000 122211 1233332 22222222 2222246
Q ss_pred CceEEEeecccccC
Q 019334 138 KMSCLMINDIDAGL 151 (342)
Q Consensus 138 ~PcILfIDEIDAg~ 151 (342)
.|++++|||.-++.
T Consensus 109 ~~~llllDEp~~gt 122 (216)
T cd03284 109 ERSLVLLDEIGRGT 122 (216)
T ss_pred CCeEEEEecCCCCC
Confidence 79999999996665
No 406
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=97.03 E-value=0.0026 Score=57.13 Aligned_cols=28 Identities=25% Similarity=0.209 Sum_probs=24.6
Q ss_pred CCCCeEEEeecCCCCCHHHHHHHHHHHh
Q 019334 71 VKVPLILGIWGGKGQGKSFQTELIFQAM 98 (342)
Q Consensus 71 ~k~PlglgL~GPPG~GKTllaravA~~~ 98 (342)
+...-.++|.||+|||||++.+++|...
T Consensus 32 i~~Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 32 AKPGELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4455789999999999999999999876
No 407
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=97.01 E-value=0.00072 Score=60.53 Aligned_cols=37 Identities=30% Similarity=0.539 Sum_probs=31.5
Q ss_pred EEEeecCCCCCHHHHHHHHHHHh---CCceEEeecccccc
Q 019334 76 ILGIWGGKGQGKSFQTELIFQAM---GIEPVIMSAGELES 112 (342)
Q Consensus 76 glgL~GPPG~GKTllaravA~~~---g~~~i~vs~~eL~s 112 (342)
+++|.|+||||||++|+.+++.+ |.+...++..+.+.
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~ 40 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYV 40 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhccc
Confidence 47899999999999999999997 45677788777775
No 408
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=97.00 E-value=0.0016 Score=65.54 Aligned_cols=69 Identities=19% Similarity=0.227 Sum_probs=43.6
Q ss_pred EEEeecCCCCCHHHHHHHHHHHhC-----CceEEeecc-ccc-----------ccccCCcHHHHHHHHHHHHHhhhhcCC
Q 019334 76 ILGIWGGKGQGKSFQTELIFQAMG-----IEPVIMSAG-ELE-----------SERAGEPGKLIRERYRTASQVVQNQGK 138 (342)
Q Consensus 76 glgL~GPPG~GKTllaravA~~~g-----~~~i~vs~~-eL~-----------s~~~GEsEr~iR~~F~~A~e~~~~~~~ 138 (342)
.+++.||+|||||++.++++.... ..++.+--+ |+. ..-+|.... -|..+...+- +..
T Consensus 151 lilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~~~~~~~~~~q~evg~~~~----~~~~~l~~aL-R~~ 225 (372)
T TIGR02525 151 LGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILGSPDDLLPPAQSQIGRDVD----SFANGIRLAL-RRA 225 (372)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccCCCceeecccccccCCCcc----CHHHHHHHhh-ccC
Confidence 578999999999999999988763 345555332 322 112233222 3444433332 457
Q ss_pred ceEEEeecccc
Q 019334 139 MSCLMINDIDA 149 (342)
Q Consensus 139 PcILfIDEIDA 149 (342)
|.+|++.||-.
T Consensus 226 PD~I~vGEiRd 236 (372)
T TIGR02525 226 PKIIGVGEIRD 236 (372)
T ss_pred CCEEeeCCCCC
Confidence 99999999853
No 409
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=97.00 E-value=0.0073 Score=62.11 Aligned_cols=77 Identities=16% Similarity=0.131 Sum_probs=46.3
Q ss_pred CCCCCeEEEeecCCCCCHHHHHHHHHHHh---CCceEEeecccccccc------cCCcH--------HHHHHHHHHHHHh
Q 019334 70 NVKVPLILGIWGGKGQGKSFQTELIFQAM---GIEPVIMSAGELESER------AGEPG--------KLIRERYRTASQV 132 (342)
Q Consensus 70 ~~k~PlglgL~GPPG~GKTllaravA~~~---g~~~i~vs~~eL~s~~------~GEsE--------r~iR~~F~~A~e~ 132 (342)
|+..--.++|.|+||+|||+++..+|... |-+.+.+++-|-.+.. .|-.. ..+-++. +.
T Consensus 90 Gi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~rlg~~~~~l~~~~e~~~~~I~----~~ 165 (454)
T TIGR00416 90 GIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKMRAIRLGLPEPNLYVLSETNWEQIC----AN 165 (454)
T ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHHHHHHcCCChHHeEEcCCCCHHHHH----HH
Confidence 34444579999999999999999887654 3466777764332110 11110 0111111 12
Q ss_pred hhhcCCceEEEeecccccC
Q 019334 133 VQNQGKMSCLMINDIDAGL 151 (342)
Q Consensus 133 ~~~~~~PcILfIDEIDAg~ 151 (342)
+. +.+|.+|+||-|-...
T Consensus 166 i~-~~~~~~vVIDSIq~l~ 183 (454)
T TIGR00416 166 IE-EENPQACVIDSIQTLY 183 (454)
T ss_pred HH-hcCCcEEEEecchhhc
Confidence 22 3579999999998864
No 410
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.99 E-value=0.0042 Score=55.74 Aligned_cols=36 Identities=25% Similarity=0.257 Sum_probs=30.6
Q ss_pred EEEeecCCCCCHHHHHHHHHHHhCCceEEeeccccc
Q 019334 76 ILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELE 111 (342)
Q Consensus 76 glgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~ 111 (342)
+++|.||||+|||.+|..++.+.+-+.+.++..+-+
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~~~ 36 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAELGGPVTYIATAEAF 36 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCeEEEEccCcC
Confidence 368999999999999999999888888888766544
No 411
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=96.99 E-value=0.0015 Score=66.19 Aligned_cols=40 Identities=18% Similarity=0.152 Sum_probs=32.9
Q ss_pred CCeEEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccc
Q 019334 73 VPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELES 112 (342)
Q Consensus 73 ~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s 112 (342)
.++.|.|.|++|||||+|++++|..+|...+.--+-+.+.
T Consensus 218 ~~~~IvI~G~~gsGKTTL~~~La~~~g~~~v~E~~R~~~~ 257 (399)
T PRK08099 218 FVRTVAILGGESSGKSTLVNKLANIFNTTSAWEYGREYVF 257 (399)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHhCCCeeeeccHHHHH
Confidence 3478999999999999999999999999877655555443
No 412
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.98 E-value=0.0051 Score=59.11 Aligned_cols=36 Identities=14% Similarity=0.259 Sum_probs=27.8
Q ss_pred CCeEEEeecCCCCCHHHHHHHHHHHh----C-CceEEeecc
Q 019334 73 VPLILGIWGGKGQGKSFQTELIFQAM----G-IEPVIMSAG 108 (342)
Q Consensus 73 ~PlglgL~GPPG~GKTllaravA~~~----g-~~~i~vs~~ 108 (342)
.|..++|.||+|+|||+++..+|..+ | ..+..++..
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D 233 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTD 233 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECC
Confidence 45689999999999999999988755 4 555555554
No 413
>PRK14974 cell division protein FtsY; Provisional
Probab=96.98 E-value=0.0072 Score=60.08 Aligned_cols=34 Identities=24% Similarity=0.384 Sum_probs=26.1
Q ss_pred CCeEEEeecCCCCCHHHHHHHHHHHh---CCceEEee
Q 019334 73 VPLILGIWGGKGQGKSFQTELIFQAM---GIEPVIMS 106 (342)
Q Consensus 73 ~PlglgL~GPPG~GKTllaravA~~~---g~~~i~vs 106 (342)
.|..+++.||||+|||+++..+|..+ |..+..+.
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~ 175 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAA 175 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEec
Confidence 47899999999999999888777543 55554444
No 414
>COG4240 Predicted kinase [General function prediction only]
Probab=96.98 E-value=0.00077 Score=64.86 Aligned_cols=44 Identities=34% Similarity=0.486 Sum_probs=35.0
Q ss_pred CCCCeEEEeecCCCCCHHHHHHHHHHHh---C-CceEEeecccccccc
Q 019334 71 VKVPLILGIWGGKGQGKSFQTELIFQAM---G-IEPVIMSAGELESER 114 (342)
Q Consensus 71 ~k~PlglgL~GPPG~GKTllaravA~~~---g-~~~i~vs~~eL~s~~ 114 (342)
.+.|+++||+||.|+|||+++-++-..+ | -.....|-.+++-.+
T Consensus 47 ~grPli~gisGpQGSGKStls~~i~~~L~~kg~ert~~lSLDDlYlth 94 (300)
T COG4240 47 RGRPLIVGISGPQGSGKSTLSALIVRLLAAKGLERTATLSLDDLYLTH 94 (300)
T ss_pred cCCceEEEeecCCCCchhhHHHHHHHHHHHhcccceEEeehhhhhcch
Confidence 5679999999999999999998776443 3 367778888888543
No 415
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=96.96 E-value=0.00062 Score=62.42 Aligned_cols=30 Identities=23% Similarity=0.453 Sum_probs=27.2
Q ss_pred EEEeecCCCCCHHHHHHHHHHHhCCceEEee
Q 019334 76 ILGIWGGKGQGKSFQTELIFQAMGIEPVIMS 106 (342)
Q Consensus 76 glgL~GPPG~GKTllaravA~~~g~~~i~vs 106 (342)
.+.|.|.||||||+.|+.++ ++|.+.+.++
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~ 31 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-ELGYKVIELN 31 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-HhCCceeeHH
Confidence 47899999999999999999 9998888765
No 416
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=96.96 E-value=0.00084 Score=70.46 Aligned_cols=122 Identities=20% Similarity=0.254 Sum_probs=78.2
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHhC---CceEEeecccc-----cccccCCcHHHHHHHHHHHHHhhhhcCCc----
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQAMG---IEPVIMSAGEL-----ESERAGEPGKLIRERYRTASQVVQNQGKM---- 139 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~~g---~~~i~vs~~eL-----~s~~~GEsEr~iR~~F~~A~e~~~~~~~P---- 139 (342)
+.+.-|+|.|..||||.++|++|=+... =|||.++++.+ +|...|--+ -+|-=|.. .|+|
T Consensus 266 ~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiPe~LlESELFGye~----GAFTGA~~----~GK~GlfE 337 (560)
T COG3829 266 KTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIPETLLESELFGYEK----GAFTGASK----GGKPGLFE 337 (560)
T ss_pred CCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCCHHHHHHHHhCcCC----cccccccc----CCCCccee
Confidence 6788899999999999999999976554 59999999543 222222111 12322221 1222
Q ss_pred ----eEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCCccCCCCCC
Q 019334 140 ----SCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDG 215 (342)
Q Consensus 140 ----cILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~~~LdpaLlRpG 215 (342)
--||+|||-..- -.+++.||-.+..-....++++ ......|=||||||+. .-.++..|
T Consensus 338 ~A~gGTLFLDEIgemp------------l~LQaKLLRVLQEkei~rvG~t---~~~~vDVRIIAATN~n---L~~~i~~G 399 (560)
T COG3829 338 LANGGTLFLDEIGEMP------------LPLQAKLLRVLQEKEIERVGGT---KPIPVDVRIIAATNRN---LEKMIAEG 399 (560)
T ss_pred eccCCeEEehhhccCC------------HHHHHHHHHHHhhceEEecCCC---CceeeEEEEEeccCcC---HHHHHhcC
Confidence 468999996642 2355667766553334445552 2223468899999984 23589999
Q ss_pred CCcc
Q 019334 216 RMEK 219 (342)
Q Consensus 216 RfD~ 219 (342)
||=+
T Consensus 400 ~FRe 403 (560)
T COG3829 400 TFRE 403 (560)
T ss_pred cchh
Confidence 9976
No 417
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.95 E-value=0.0013 Score=66.31 Aligned_cols=25 Identities=20% Similarity=0.267 Sum_probs=22.1
Q ss_pred CeEEEeecCCCCCHHHHHHHHHHHh
Q 019334 74 PLILGIWGGKGQGKSFQTELIFQAM 98 (342)
Q Consensus 74 PlglgL~GPPG~GKTllaravA~~~ 98 (342)
...++|.||+|+|||+++..+|..+
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999763
No 418
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=96.95 E-value=0.0009 Score=62.15 Aligned_cols=36 Identities=25% Similarity=0.440 Sum_probs=30.8
Q ss_pred CeEEEeecCCCCCHHHHHHHHHHHhCCceEEeeccccc
Q 019334 74 PLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELE 111 (342)
Q Consensus 74 PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~ 111 (342)
+..+.|-||+|||||++++.+|+++|++++ +.++++
T Consensus 2 ~~~i~i~G~~GsGKst~~~~la~~~~~~~~--~~g~~~ 37 (217)
T TIGR00017 2 AMIIAIDGPSGAGKSTVAKAVAEKLGYAYL--DSGAMY 37 (217)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCcee--eCchHH
Confidence 467899999999999999999999997655 566665
No 419
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=96.94 E-value=0.0021 Score=67.37 Aligned_cols=59 Identities=24% Similarity=0.287 Sum_probs=41.5
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccccccCCcHHHHHHHHHHHHHhhhhcCCceEE
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCL 142 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~~~GEsEr~iR~~F~~A~e~~~~~~~PcIL 142 (342)
..|..+++.|+||+|||++|+.++...|+ +.++..++ |. -......|.+..+ +|++.||
T Consensus 367 ~~p~LVil~G~pGSGKST~A~~l~~~~g~--~~vn~D~l-----g~----~~~~~~~a~~~L~-~G~sVVI 425 (526)
T TIGR01663 367 APCEMVIAVGFPGAGKSHFCKKFFQPAGY--KHVNADTL-----GS----TQNCLTACERALD-QGKRCAI 425 (526)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHcCC--eEECcHHH-----HH----HHHHHHHHHHHHh-CCCcEEE
Confidence 56789999999999999999999999875 45555544 21 1223344555554 6887764
No 420
>PLN02199 shikimate kinase
Probab=96.94 E-value=0.0023 Score=63.05 Aligned_cols=47 Identities=17% Similarity=0.114 Sum_probs=35.2
Q ss_pred HHHHHHHhhcCCCCCeEEEeecCCCCCHHHHHHHHHHHhCCceEEee
Q 019334 60 IVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMS 106 (342)
Q Consensus 60 i~K~~l~~~~~~k~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs 106 (342)
++|+.-.++.......-|.|.|++|||||++++.+|+.+|.+||-.+
T Consensus 88 ~Lk~~a~~i~~~l~~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD 134 (303)
T PLN02199 88 ILKRKAEEVKPYLNGRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCD 134 (303)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHHhCCCEEehH
Confidence 45655554332223456788899999999999999999999987654
No 421
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=96.93 E-value=0.0037 Score=53.66 Aligned_cols=25 Identities=20% Similarity=0.290 Sum_probs=21.9
Q ss_pred EEeecCCCCCHHHHHHHHHHHhCCc
Q 019334 77 LGIWGGKGQGKSFQTELIFQAMGIE 101 (342)
Q Consensus 77 lgL~GPPG~GKTllaravA~~~g~~ 101 (342)
+.|.||+|||||++++++++.....
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~~~ 26 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFDPN 26 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCCcc
Confidence 5788999999999999999986544
No 422
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.93 E-value=0.0024 Score=56.08 Aligned_cols=26 Identities=27% Similarity=0.466 Sum_probs=22.6
Q ss_pred CCeEEEeecCCCCCHHHHHHHHHHHh
Q 019334 73 VPLILGIWGGKGQGKSFQTELIFQAM 98 (342)
Q Consensus 73 ~PlglgL~GPPG~GKTllaravA~~~ 98 (342)
.--.++|.||.|||||++.+++|...
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 25 KGEIYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 33579999999999999999999864
No 423
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=96.93 E-value=0.0015 Score=68.25 Aligned_cols=35 Identities=23% Similarity=0.192 Sum_probs=29.2
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHhCCceEEeec
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSA 107 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~ 107 (342)
+.|+++++ |+||||||++.+.+|+.+|.+|+-++.
T Consensus 5 ~~~~i~Li-G~~GaGKttvg~~LA~~L~~~fiD~D~ 39 (542)
T PRK14021 5 RRPQAVII-GMMGAGKTRVGKEVAQMMRLPFADADV 39 (542)
T ss_pred CCccEEEE-CCCCCCHHHHHHHHHHHhCCCEEEchH
Confidence 34455554 999999999999999999999997764
No 424
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=96.92 E-value=0.0035 Score=56.22 Aligned_cols=29 Identities=28% Similarity=0.302 Sum_probs=23.8
Q ss_pred EEEeecCCCCCHHHHHHHHHHHhCCceEE
Q 019334 76 ILGIWGGKGQGKSFQTELIFQAMGIEPVI 104 (342)
Q Consensus 76 glgL~GPPG~GKTllaravA~~~g~~~i~ 104 (342)
...|.||.|+|||.+..|++-.++..-..
T Consensus 24 ~~~i~G~NGsGKSnil~Ai~~~~~~~~~~ 52 (178)
T cd03239 24 FNAIVGPNGSGKSNIVDAICFVLGGKAAK 52 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCccccc
Confidence 77899999999999999998776654333
No 425
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.91 E-value=0.0033 Score=55.52 Aligned_cols=27 Identities=26% Similarity=0.255 Sum_probs=23.0
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHh
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQAM 98 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~~ 98 (342)
..--.++|.||.|+|||++.+++++..
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 24 EAGEIVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 334589999999999999999999654
No 426
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.91 E-value=0.0058 Score=59.24 Aligned_cols=29 Identities=17% Similarity=0.279 Sum_probs=23.9
Q ss_pred CCCCCeEEEeecCCCCCHHHHHHHHHHHh
Q 019334 70 NVKVPLILGIWGGKGQGKSFQTELIFQAM 98 (342)
Q Consensus 70 ~~k~PlglgL~GPPG~GKTllaravA~~~ 98 (342)
|+.....+.|+||||||||.+|-.+|...
T Consensus 98 Gi~~g~vtei~G~~GsGKT~l~~~~~~~~ 126 (317)
T PRK04301 98 GIETQSITEFYGEFGSGKTQICHQLAVNV 126 (317)
T ss_pred CccCCcEEEEECCCCCCHhHHHHHHHHHh
Confidence 35555789999999999999999888653
No 427
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.91 E-value=0.0057 Score=58.75 Aligned_cols=40 Identities=15% Similarity=0.243 Sum_probs=30.0
Q ss_pred CCCCCeEEEeecCCCCCHHHHHHHHHHHhC---------CceEEeeccc
Q 019334 70 NVKVPLILGIWGGKGQGKSFQTELIFQAMG---------IEPVIMSAGE 109 (342)
Q Consensus 70 ~~k~PlglgL~GPPG~GKTllaravA~~~g---------~~~i~vs~~e 109 (342)
|+....++.|+||||||||.+|-.+|...- -..+-++..+
T Consensus 91 Gi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~ 139 (310)
T TIGR02236 91 GIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTEN 139 (310)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCC
Confidence 345557889999999999999998886632 2566666654
No 428
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=96.91 E-value=0.0042 Score=64.51 Aligned_cols=30 Identities=33% Similarity=0.382 Sum_probs=28.4
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHhCCc
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQAMGIE 101 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~~g~~ 101 (342)
+.|..++++|+||||||+++..+|..+|+.
T Consensus 253 k~p~vil~~G~~G~GKSt~a~~LA~~lg~~ 282 (475)
T PRK12337 253 PRPLHVLIGGVSGVGKSVLASALAYRLGIT 282 (475)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCc
Confidence 569999999999999999999999999986
No 429
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=96.91 E-value=0.00095 Score=69.78 Aligned_cols=39 Identities=26% Similarity=0.370 Sum_probs=34.6
Q ss_pred CCeEEEeecCCCCCHHHHHHHHHHHhCCceEEeeccccccc
Q 019334 73 VPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESE 113 (342)
Q Consensus 73 ~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~ 113 (342)
.|..+.|.||+|||||++|+++|+.+| +..++.+.++..
T Consensus 283 ~~~ii~i~G~sgsGKst~a~~la~~l~--~~~~d~g~~YR~ 321 (512)
T PRK13477 283 RQPIIAIDGPAGAGKSTVTRAVAKKLG--LLYLDTGAMYRA 321 (512)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC--CeEecCCceehH
Confidence 567899999999999999999999998 677888888864
No 430
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=96.89 E-value=0.0015 Score=61.94 Aligned_cols=47 Identities=19% Similarity=0.163 Sum_probs=34.8
Q ss_pred eEEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccccccCCcHHH
Q 019334 75 LILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKL 121 (342)
Q Consensus 75 lglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~~~GEsEr~ 121 (342)
...+|+||+|+|||-+|-++|++.|+++|+.+.-.+++...=-|.|-
T Consensus 2 ~v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~~l~v~Sgrp 48 (233)
T PF01745_consen 2 KVYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCYPELSVGSGRP 48 (233)
T ss_dssp EEEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-GGGTTTTT--
T ss_pred cEEEEECCCCCChhHHHHHHHHHhCCCEEEecceecccccccccCCC
Confidence 35789999999999999999999999999999999998764445543
No 431
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=96.89 E-value=0.0011 Score=59.14 Aligned_cols=49 Identities=20% Similarity=0.384 Sum_probs=35.2
Q ss_pred EEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccccccCCcH---HHHHHHH
Q 019334 76 ILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPG---KLIRERY 126 (342)
Q Consensus 76 glgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~~~GEsE---r~iR~~F 126 (342)
+++|.|++|||||++++.++...|+++ +++.++.....-.++ +.|.+.|
T Consensus 1 ~i~itG~~gsGKst~~~~l~~~~~~~~--i~~D~~~~~~~~~~~~~~~~i~~~f 52 (188)
T TIGR00152 1 IIGLTGGIGSGKSTVANYLADKYHFPV--IDADKIAHQVVEKGSPAYEKIVDHF 52 (188)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCeE--EeCCHHHHHHHhcCChHHHHHHHHH
Confidence 479999999999999999999876654 566777665444433 3344444
No 432
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.87 E-value=0.0012 Score=57.65 Aligned_cols=30 Identities=23% Similarity=0.406 Sum_probs=26.7
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHhCCc
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQAMGIE 101 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~~g~~ 101 (342)
++...++|.|+.|||||+++|++++.+|+.
T Consensus 20 ~~~~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 20 DFGTVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 345689999999999999999999999964
No 433
>PLN02348 phosphoribulokinase
Probab=96.87 E-value=0.0015 Score=66.32 Aligned_cols=30 Identities=20% Similarity=0.248 Sum_probs=27.7
Q ss_pred CCCCeEEEeecCCCCCHHHHHHHHHHHhCC
Q 019334 71 VKVPLILGIWGGKGQGKSFQTELIFQAMGI 100 (342)
Q Consensus 71 ~k~PlglgL~GPPG~GKTllaravA~~~g~ 100 (342)
.+.|.+|||.|++|||||++|+.++..++.
T Consensus 46 ~~~p~IIGIaG~SGSGKSTfA~~L~~~Lg~ 75 (395)
T PLN02348 46 DDGTVVIGLAADSGCGKSTFMRRLTSVFGG 75 (395)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 467899999999999999999999999974
No 434
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.86 E-value=0.017 Score=55.48 Aligned_cols=36 Identities=17% Similarity=0.290 Sum_probs=27.6
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHh---CCceEEeec
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQAM---GIEPVIMSA 107 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~~---g~~~i~vs~ 107 (342)
+.|..+++.||||+|||+.+..+|..+ |-.+..+++
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~ 108 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAG 108 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 457888899999999999988887655 555555554
No 435
>PRK00023 cmk cytidylate kinase; Provisional
Probab=96.85 E-value=0.001 Score=61.80 Aligned_cols=36 Identities=19% Similarity=0.470 Sum_probs=30.7
Q ss_pred CeEEEeecCCCCCHHHHHHHHHHHhCCceEEeeccccc
Q 019334 74 PLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELE 111 (342)
Q Consensus 74 PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~ 111 (342)
+..+.|-||||||||++++++|+++|+++ ++.+.++
T Consensus 4 ~~~i~i~g~~gsGksti~~~la~~~~~~~--~~~~~~~ 39 (225)
T PRK00023 4 AIVIAIDGPAGSGKGTVAKILAKKLGFHY--LDTGAMY 39 (225)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCCc--ccCchhH
Confidence 46899999999999999999999999655 5666653
No 436
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=96.85 E-value=0.0086 Score=54.56 Aligned_cols=38 Identities=16% Similarity=0.186 Sum_probs=27.1
Q ss_pred CCCCCeEEEeecCCCCCHHHHHHHHHHH---hCCceEEeec
Q 019334 70 NVKVPLILGIWGGKGQGKSFQTELIFQA---MGIEPVIMSA 107 (342)
Q Consensus 70 ~~k~PlglgL~GPPG~GKTllaravA~~---~g~~~i~vs~ 107 (342)
|+.....++|.||||+|||.+|..+|.+ .|-+.+.++.
T Consensus 12 Gi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~ 52 (224)
T TIGR03880 12 GFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISL 52 (224)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 3444468999999999999998877643 3655555554
No 437
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.84 E-value=0.0038 Score=55.28 Aligned_cols=28 Identities=32% Similarity=0.423 Sum_probs=23.8
Q ss_pred CCCCeEEEeecCCCCCHHHHHHHHHHHh
Q 019334 71 VKVPLILGIWGGKGQGKSFQTELIFQAM 98 (342)
Q Consensus 71 ~k~PlglgL~GPPG~GKTllaravA~~~ 98 (342)
++.--.++|.||+|+|||++.+++++..
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 23 VRAGEIVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3444679999999999999999999764
No 438
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.83 E-value=0.00084 Score=58.53 Aligned_cols=28 Identities=25% Similarity=0.253 Sum_probs=24.1
Q ss_pred eEEEeecCCCCCHHHHHHHHHHHhCCce
Q 019334 75 LILGIWGGKGQGKSFQTELIFQAMGIEP 102 (342)
Q Consensus 75 lglgL~GPPG~GKTllaravA~~~g~~~ 102 (342)
.+++|.||+|||||++++++++......
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~~~~~ 29 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEEDPNLK 29 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccCcccc
Confidence 4688999999999999999999876533
No 439
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=96.82 E-value=0.0013 Score=59.01 Aligned_cols=34 Identities=21% Similarity=0.228 Sum_probs=28.4
Q ss_pred eEEEeecCCCCCHHHHHHHHHHHhCCceEEeecccc
Q 019334 75 LILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGEL 110 (342)
Q Consensus 75 lglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL 110 (342)
..++|.||+|||||++++++++.++. +.+++.++
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~l~~--~~i~gd~~ 37 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAALFSA--KFIDGDDL 37 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCC--EEECCccc
Confidence 46899999999999999999999986 45566555
No 440
>PF13479 AAA_24: AAA domain
Probab=96.82 E-value=0.0036 Score=57.39 Aligned_cols=72 Identities=15% Similarity=0.091 Sum_probs=44.7
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHhCCceEEeecccc-cccc------cCCcHHHHHHHHHHHHHhhhhcCCceEEEe
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGEL-ESER------AGEPGKLIRERYRTASQVVQNQGKMSCLMI 144 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL-~s~~------~GEsEr~iR~~F~~A~e~~~~~~~PcILfI 144 (342)
|-|..++||||||+|||++|..+ =..-+|-...+.. +..+ -=.+-..+.+.+....+. ...=..|+|
T Consensus 1 ~~~~~~lIyG~~G~GKTt~a~~~---~k~l~id~E~g~~~~~~~~~~~~i~i~s~~~~~~~~~~l~~~---~~~y~tiVI 74 (213)
T PF13479_consen 1 KKPIKILIYGPPGSGKTTLAASL---PKPLFIDTENGSDSLKFLDDGDVIPITSWEDFLEALDELEED---EADYDTIVI 74 (213)
T ss_pred CCceEEEEECCCCCCHHHHHHhC---CCeEEEEeCCCccchhhhcCCCeeCcCCHHHHHHHHHHHHhc---cCCCCEEEE
Confidence 35788999999999999999877 3333444555521 1111 112555666666554322 234678999
Q ss_pred ecccc
Q 019334 145 NDIDA 149 (342)
Q Consensus 145 DEIDA 149 (342)
|-|+.
T Consensus 75 Dsis~ 79 (213)
T PF13479_consen 75 DSISW 79 (213)
T ss_pred ECHHH
Confidence 98887
No 441
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=96.82 E-value=0.0026 Score=61.80 Aligned_cols=70 Identities=14% Similarity=0.264 Sum_probs=43.8
Q ss_pred CeEEEeecCCCCCHHHHHHHHHHHhC-----CceEEeec-cccc-------ccccCCcHHHHHHHHHHHHHhhhhcCCce
Q 019334 74 PLILGIWGGKGQGKSFQTELIFQAMG-----IEPVIMSA-GELE-------SERAGEPGKLIRERYRTASQVVQNQGKMS 140 (342)
Q Consensus 74 PlglgL~GPPG~GKTllaravA~~~g-----~~~i~vs~-~eL~-------s~~~GEsEr~iR~~F~~A~e~~~~~~~Pc 140 (342)
-..++|.||+|+|||+++++++.... -.++.+.- .|+. .-..++....+.++.+.|. +..|.
T Consensus 132 ~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v~~~~~~~~~~~~~~l~~aL-----R~~pD 206 (299)
T TIGR02782 132 RKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVVQLRTSDDAISMTRLLKATL-----RLRPD 206 (299)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEEEEEecCCCCCHHHHHHHHh-----cCCCC
Confidence 46788999999999999999998862 33333322 2322 1112222213444444443 45799
Q ss_pred EEEeeccc
Q 019334 141 CLMINDID 148 (342)
Q Consensus 141 ILfIDEID 148 (342)
.|++.||=
T Consensus 207 ~iivGEiR 214 (299)
T TIGR02782 207 RIIVGEVR 214 (299)
T ss_pred EEEEeccC
Confidence 99999985
No 442
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.81 E-value=0.0085 Score=66.40 Aligned_cols=183 Identities=19% Similarity=0.228 Sum_probs=115.9
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHH----------hCCceEEeecccccc--cccCCcHHHHHHHHHHHHHhhhhcCCc
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQA----------MGIEPVIMSAGELES--ERAGEPGKLIRERYRTASQVVQNQGKM 139 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~----------~g~~~i~vs~~eL~s--~~~GEsEr~iR~~F~~A~e~~~~~~~P 139 (342)
+-..-=.|-|.||.|||-+++=+|.. .+..++.++-+.+.+ ++-||-|.++.++-+++.. .+..
T Consensus 206 rtk~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g~l~aGa~~rge~E~rlk~l~k~v~~----~~~g 281 (898)
T KOG1051|consen 206 KTKNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFGSLVAGAKRRGEFEERLKELLKEVES----GGGG 281 (898)
T ss_pred cCCCCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhhhcccCcccchHHHHHHHHHHHHHhc----CCCc
Confidence 33344455688999999999999865 355788888888777 4789999999999988754 4678
Q ss_pred eEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCC------CccCCCC
Q 019334 140 SCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFST------IYAPLIR 213 (342)
Q Consensus 140 cILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~~~------LdpaLlR 213 (342)
-|||||||+...+...+.+ . .. .. -+|..+- . ...+-+|+||. .++ =||+|-|
T Consensus 282 vILfigelh~lvg~g~~~~--~-~d-~~-nlLkp~L--------------~-rg~l~~IGatT-~e~Y~k~iekdPalEr 340 (898)
T KOG1051|consen 282 VILFLGELHWLVGSGSNYG--A-ID-AA-NLLKPLL--------------A-RGGLWCIGATT-LETYRKCIEKDPALER 340 (898)
T ss_pred EEEEecceeeeecCCCcch--H-HH-HH-HhhHHHH--------------h-cCCeEEEeccc-HHHHHHHHhhCcchhh
Confidence 8999999999775332211 1 01 11 2222111 0 12377888765 333 4899999
Q ss_pred CCCCcceec-CCCHHHHHHHHHHHhhc------CCCCHHHHH--------HHhhcC-CCCccchHHH--HHHHHHHHHHH
Q 019334 214 DGRMEKFYW-QPNLEDILNIVHRMYEK------DGITKDEVG--------SIVKTF-PNQALDFYGA--LRSRTYDRSIS 275 (342)
Q Consensus 214 pGRfD~~i~-vP~~~~R~~Il~~~~~~------~~~s~~di~--------~lvd~f-~~~~~df~gA--lrs~~~~e~ir 275 (342)
||+..+. +|+.++=..||+..-.. ..++...+. .+...| |.-.+|+-.. -..+...+...
T Consensus 341 --rw~l~~v~~pS~~~~~~iL~~l~~~~e~~hg~~~s~~a~~~a~~~s~~~~t~r~lpd~aidl~dEa~a~~~~~~~~lP 418 (898)
T KOG1051|consen 341 --RWQLVLVPIPSVENLSLILPGLSERYEVHHGVRISDESLFSAAQLSARYITLSFLPDCAIDLEDEAAALVKSQAESLP 418 (898)
T ss_pred --CcceeEeccCcccchhhhhhhhhhhhccccCCcccccccccccchhhhhcccCcCchhcccHHHHHHHHHhhhhhhCC
Confidence 9998765 69888766777654332 112222211 122233 5566777543 33444566678
Q ss_pred HHHHHc
Q 019334 276 KWIDDI 281 (342)
Q Consensus 276 ~w~~~~ 281 (342)
.|+...
T Consensus 419 ~wL~~~ 424 (898)
T KOG1051|consen 419 PWLQNL 424 (898)
T ss_pred HHHHhh
Confidence 888876
No 443
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=96.81 E-value=0.0047 Score=67.65 Aligned_cols=78 Identities=15% Similarity=0.240 Sum_probs=48.7
Q ss_pred CCCCeEEEeecCCCCCHHHHHHHHHH---HhCCceEEeecccccc----------------cccCCcHHHHHHHHHHHHH
Q 019334 71 VKVPLILGIWGGKGQGKSFQTELIFQ---AMGIEPVIMSAGELES----------------ERAGEPGKLIRERYRTASQ 131 (342)
Q Consensus 71 ~k~PlglgL~GPPG~GKTllaravA~---~~g~~~i~vs~~eL~s----------------~~~GEsEr~iR~~F~~A~e 131 (342)
+..-.++.|+||||||||++|-.++. ..|-..+-++..+-++ ...-.+|. .+..+.+
T Consensus 57 ip~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t~~~~~A~~lGvDl~~llv~~~~~~E~----~l~~i~~ 132 (790)
T PRK09519 57 LPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQ----ALEIADM 132 (790)
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchhHHHHHHcCCChhHeEEecCCCHHH----HHHHHHH
Confidence 33346899999999999999954332 3455556666554222 00111222 3333444
Q ss_pred hhhhcCCceEEEeecccccCCC
Q 019334 132 VVQNQGKMSCLMINDIDAGLGR 153 (342)
Q Consensus 132 ~~~~~~~PcILfIDEIDAg~~r 153 (342)
.++ .++|.+|+||-|-+..+|
T Consensus 133 lv~-~~~~~LVVIDSI~aL~~r 153 (790)
T PRK09519 133 LIR-SGALDIVVIDSVAALVPR 153 (790)
T ss_pred Hhh-cCCCeEEEEcchhhhcch
Confidence 443 578999999999998874
No 444
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=96.80 E-value=0.0014 Score=64.22 Aligned_cols=36 Identities=17% Similarity=0.149 Sum_probs=31.8
Q ss_pred CCeEEEeecCCCCCHHHHHHHHHHHhCCceEEeecc
Q 019334 73 VPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAG 108 (342)
Q Consensus 73 ~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~ 108 (342)
.|..+.|.||+|||||.+|..+|++++..+|+.+.-
T Consensus 3 ~~~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds~ 38 (307)
T PRK00091 3 KPKVIVIVGPTASGKTALAIELAKRLNGEIISADSM 38 (307)
T ss_pred CceEEEEECCCCcCHHHHHHHHHHhCCCcEEecccc
Confidence 357899999999999999999999999988877663
No 445
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=96.80 E-value=0.0028 Score=56.10 Aligned_cols=28 Identities=29% Similarity=0.353 Sum_probs=24.5
Q ss_pred EEeecCCCCCHHHHHHHHHHHhCCceEE
Q 019334 77 LGIWGGKGQGKSFQTELIFQAMGIEPVI 104 (342)
Q Consensus 77 lgL~GPPG~GKTllaravA~~~g~~~i~ 104 (342)
+.+-|++|||||++++++++.+|+.++.
T Consensus 2 I~ieG~~GsGKSTl~~~L~~~~~~~~~~ 29 (193)
T cd01673 2 IVVEGNIGAGKSTLAKELAEHLGYEVVP 29 (193)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcccc
Confidence 5689999999999999999998876554
No 446
>PTZ00494 tuzin-like protein; Provisional
Probab=96.78 E-value=0.0059 Score=63.84 Aligned_cols=75 Identities=21% Similarity=0.344 Sum_probs=57.7
Q ss_pred hcCCCCCeEEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccc--------------cccCCcHHHHHHHHHHHHHhh
Q 019334 68 LLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELES--------------ERAGEPGKLIRERYRTASQVV 133 (342)
Q Consensus 68 ~~~~k~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s--------------~~~GEsEr~iR~~F~~A~e~~ 133 (342)
.+.+.+|+|+.+.|.-|||||++|+..-.+-+++.+.|+..--++ .--|+.=.-|-+.|+.|...+
T Consensus 389 qld~aHPRIvV~TG~~GcGKSslcRsAvrkE~~paV~VDVRg~EDtLrsVVKALgV~nve~CGDlLdFI~ea~~~A~~~~ 468 (664)
T PTZ00494 389 QMAPSHPRIVALAGGSGGGRCVPCRRAVRVEGVALVHVDVGGTEDTLRSVVRALGVSNVEVCGDLLGFVEEAMRGATVKA 468 (664)
T ss_pred hccCCCCcEEEEecCCCCCchHHHHHHHHHcCCCeEEEEecCCcchHHHHHHHhCCCChhhhccHHHHHHHHHHHHHHhc
Confidence 566789999999999999999999999999999988877632222 123556667889999997644
Q ss_pred hhcCCceEEEe
Q 019334 134 QNQGKMSCLMI 144 (342)
Q Consensus 134 ~~~~~PcILfI 144 (342)
.|.+-+|.+
T Consensus 469 --~g~~P~lVl 477 (664)
T PTZ00494 469 --SDGVPFLVM 477 (664)
T ss_pred --CCCCCEEEE
Confidence 467766653
No 447
>PRK13764 ATPase; Provisional
Probab=96.77 E-value=0.0021 Score=68.41 Aligned_cols=27 Identities=22% Similarity=0.140 Sum_probs=24.0
Q ss_pred CCeEEEeecCCCCCHHHHHHHHHHHhC
Q 019334 73 VPLILGIWGGKGQGKSFQTELIFQAMG 99 (342)
Q Consensus 73 ~PlglgL~GPPG~GKTllaravA~~~g 99 (342)
...++++.||||||||++++|++..+.
T Consensus 256 ~~~~ILIsG~TGSGKTTll~AL~~~i~ 282 (602)
T PRK13764 256 RAEGILIAGAPGAGKSTFAQALAEFYA 282 (602)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 457899999999999999999997775
No 448
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.76 E-value=0.0036 Score=59.75 Aligned_cols=70 Identities=13% Similarity=0.213 Sum_probs=42.3
Q ss_pred EEEeecCCCCCHHHHHHHHHHHhC---CceEEe-eccccccc-----ccCCcHHHHHHHHHHHHHhhhhcCCceEEEeec
Q 019334 76 ILGIWGGKGQGKSFQTELIFQAMG---IEPVIM-SAGELESE-----RAGEPGKLIRERYRTASQVVQNQGKMSCLMIND 146 (342)
Q Consensus 76 glgL~GPPG~GKTllaravA~~~g---~~~i~v-s~~eL~s~-----~~GEsEr~iR~~F~~A~e~~~~~~~PcILfIDE 146 (342)
.++|.||+|+|||++.+++...+. ..++.+ +..|+.-+ .+.+.. ..-|..+...+- +..|.+|+|+|
T Consensus 82 lilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~~~~~q~~v~~~~---~~~~~~~l~~~l-R~~PD~i~vgE 157 (264)
T cd01129 82 IILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQIPGINQVQVNEKA---GLTFARGLRAIL-RQDPDIIMVGE 157 (264)
T ss_pred EEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecCCCceEEEeCCcC---CcCHHHHHHHHh-ccCCCEEEecc
Confidence 589999999999999999987764 234444 23333221 111110 112444433332 46799999999
Q ss_pred ccc
Q 019334 147 IDA 149 (342)
Q Consensus 147 IDA 149 (342)
|-.
T Consensus 158 iR~ 160 (264)
T cd01129 158 IRD 160 (264)
T ss_pred CCC
Confidence 943
No 449
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.76 E-value=0.023 Score=58.39 Aligned_cols=36 Identities=19% Similarity=0.292 Sum_probs=29.4
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHh---CCceEEeec
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQAM---GIEPVIMSA 107 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~~---g~~~i~vs~ 107 (342)
..|..+++.||||+|||+.|..+|..+ |..+..+++
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~ 136 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCA 136 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcC
Confidence 357899999999999999998888655 766666665
No 450
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=96.76 E-value=0.0012 Score=61.20 Aligned_cols=36 Identities=19% Similarity=0.309 Sum_probs=27.7
Q ss_pred EEEeecCCCCCHHHHHHHHHHHhC-----CceEEeeccccc
Q 019334 76 ILGIWGGKGQGKSFQTELIFQAMG-----IEPVIMSAGELE 111 (342)
Q Consensus 76 glgL~GPPG~GKTllaravA~~~g-----~~~i~vs~~eL~ 111 (342)
++||.||+|+|||++|+.++..+. .....++....+
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~ 41 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFL 41 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCccc
Confidence 479999999999999999999874 234555555544
No 451
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=96.75 E-value=0.0014 Score=71.02 Aligned_cols=28 Identities=29% Similarity=0.449 Sum_probs=23.6
Q ss_pred CCCCeE--EEeecCCCCCHHHHHHHHHHHh
Q 019334 71 VKVPLI--LGIWGGKGQGKSFQTELIFQAM 98 (342)
Q Consensus 71 ~k~Plg--lgL~GPPG~GKTllaravA~~~ 98 (342)
++.|.| ++|-|+.|||||+++|.+.+-.
T Consensus 494 L~I~~Ge~vaIvG~SGsGKSTL~KLL~gly 523 (709)
T COG2274 494 LEIPPGEKVAIVGRSGSGKSTLLKLLLGLY 523 (709)
T ss_pred EEeCCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 455666 9999999999999999998644
No 452
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.75 E-value=0.0014 Score=58.43 Aligned_cols=33 Identities=15% Similarity=0.182 Sum_probs=26.5
Q ss_pred eEEEeecCCCCCHHHHHHHHHHHhCCceEEeecc
Q 019334 75 LILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAG 108 (342)
Q Consensus 75 lglgL~GPPG~GKTllaravA~~~g~~~i~vs~~ 108 (342)
..+.|.||+|||||+++++++...+..+ .++..
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~~~~~-~~~~~ 35 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQREQTQL-LVAHR 35 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCCCeE-EEcCE
Confidence 4678899999999999999999988653 34333
No 453
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.75 E-value=0.0048 Score=56.46 Aligned_cols=25 Identities=20% Similarity=0.417 Sum_probs=20.6
Q ss_pred CeEEEeecCCCCCHHHHHHHHHHHh
Q 019334 74 PLILGIWGGKGQGKSFQTELIFQAM 98 (342)
Q Consensus 74 PlglgL~GPPG~GKTllaravA~~~ 98 (342)
|..+.+.||+|+|||+.+--+|..+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~ 25 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARL 25 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHH
Confidence 7899999999999999876666443
No 454
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=96.75 E-value=0.011 Score=57.84 Aligned_cols=117 Identities=11% Similarity=0.054 Sum_probs=72.8
Q ss_pred CCCCCeEEEeecCCCCCHHHHHHHHHHHhCCceE--------Eeecccccccc-cCC----cHHHHHHHHHHHHHhhhhc
Q 019334 70 NVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPV--------IMSAGELESER-AGE----PGKLIRERYRTASQVVQNQ 136 (342)
Q Consensus 70 ~~k~PlglgL~GPPG~GKTllaravA~~~g~~~i--------~vs~~eL~s~~-~GE----sEr~iR~~F~~A~e~~~~~ 136 (342)
.-+.|-..+++||+|+||+.+|.++|..+-+.-- .-.-+|+.--. .|. +=..+|++-+++... +..
T Consensus 15 ~~rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~-p~e 93 (290)
T PRK05917 15 DQKVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRAIKKQIWIH-PYE 93 (290)
T ss_pred cCCcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHHHHHHHhhC-ccC
Confidence 3488999999999999999999999988865210 01113321100 111 234566666555322 223
Q ss_pred CCceEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCCccCCCC
Q 019334 137 GKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIR 213 (342)
Q Consensus 137 ~~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~~~LdpaLlR 213 (342)
+.--|++||+.|..-. + -...||..+. ++ ..++.+|..|+.++.|.|.++=
T Consensus 94 ~~~kv~ii~~ad~mt~-----------~-AaNaLLK~LE-------------EP-p~~~~fiL~~~~~~~ll~TI~S 144 (290)
T PRK05917 94 SPYKIYIIHEADRMTL-----------D-AISAFLKVLE-------------DP-PQHGVIILTSAKPQRLPPTIRS 144 (290)
T ss_pred CCceEEEEechhhcCH-----------H-HHHHHHHHhh-------------cC-CCCeEEEEEeCChhhCcHHHHh
Confidence 5557999999998742 1 1224555444 33 4677777778888999988653
No 455
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=96.74 E-value=0.0011 Score=58.36 Aligned_cols=25 Identities=20% Similarity=0.316 Sum_probs=21.5
Q ss_pred cCCCCCHHHHHHHHHHHhCCceEEeec
Q 019334 81 GGKGQGKSFQTELIFQAMGIEPVIMSA 107 (342)
Q Consensus 81 GPPG~GKTllaravA~~~g~~~i~vs~ 107 (342)
||||||||++++++++.+|.. .+++
T Consensus 2 G~sGsGKSTla~~la~~l~~~--~~~~ 26 (163)
T PRK11545 2 GVSGSGKSAVASEVAHQLHAA--FLDG 26 (163)
T ss_pred CCCCCcHHHHHHHHHHHhCCe--EEeC
Confidence 999999999999999999854 4444
No 456
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=96.74 E-value=0.0023 Score=59.84 Aligned_cols=73 Identities=16% Similarity=0.167 Sum_probs=44.0
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHhCCc---eEEee-ccccccccc-------CCcHHHHHHHHHHHHHhhhhcCCce
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQAMGIE---PVIMS-AGELESERA-------GEPGKLIRERYRTASQVVQNQGKMS 140 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~~g~~---~i~vs-~~eL~s~~~-------GEsEr~iR~~F~~A~e~~~~~~~Pc 140 (342)
+.-..+++.||+|||||++.+++..++.-. ++.+. ..|+.-+.. ...+....++++.|. +..|.
T Consensus 125 ~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~~l~~~~~~~~~~~~~~~~~~~~l~~~L-----R~~pD 199 (270)
T PF00437_consen 125 RGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPELRLPGPNQIQIQTRRDEISYEDLLKSAL-----RQDPD 199 (270)
T ss_dssp HTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S--SCSSEEEEEEETTTBSHHHHHHHHT-----TS--S
T ss_pred ccceEEEEECCCccccchHHHHHhhhccccccceEEeccccceeecccceEEEEeecCcccHHHHHHHHh-----cCCCC
Confidence 345789999999999999999999887665 23332 334432211 122333444444443 45699
Q ss_pred EEEeecccc
Q 019334 141 CLMINDIDA 149 (342)
Q Consensus 141 ILfIDEIDA 149 (342)
+|+|.||-.
T Consensus 200 ~iiigEiR~ 208 (270)
T PF00437_consen 200 VIIIGEIRD 208 (270)
T ss_dssp EEEESCE-S
T ss_pred cccccccCC
Confidence 999999964
No 457
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.73 E-value=0.0029 Score=62.69 Aligned_cols=29 Identities=28% Similarity=0.312 Sum_probs=25.4
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHhCC
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQAMGI 100 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~~g~ 100 (342)
.-|..+.|.||.|||||++.+++...+..
T Consensus 20 ~~~~~~fv~G~~GtGKs~l~~~i~~~~~~ 48 (364)
T PF05970_consen 20 EEGLNFFVTGPAGTGKSFLIKAIIDYLRS 48 (364)
T ss_pred cCCcEEEEEcCCCCChhHHHHHHHHHhcc
Confidence 67889999999999999999999877643
No 458
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=96.73 E-value=0.0066 Score=62.16 Aligned_cols=25 Identities=28% Similarity=0.302 Sum_probs=22.2
Q ss_pred eEEEeecCCCCCHHHHHHHHHHHhC
Q 019334 75 LILGIWGGKGQGKSFQTELIFQAMG 99 (342)
Q Consensus 75 lglgL~GPPG~GKTllaravA~~~g 99 (342)
..++|.||.|||||++++++++.+.
T Consensus 362 ~~vaIvG~SGsGKSTLl~lL~g~~~ 386 (529)
T TIGR02868 362 ERVAILGPSGSGKSTLLMLLTGLLD 386 (529)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 5689999999999999999997664
No 459
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.73 E-value=0.0049 Score=59.83 Aligned_cols=78 Identities=21% Similarity=0.292 Sum_probs=48.1
Q ss_pred CCCCeEEEeecCCCCCHHHHHHHHHHHhCCc--eEEeeccccccc--------------ccCCcHHH-----------HH
Q 019334 71 VKVPLILGIWGGKGQGKSFQTELIFQAMGIE--PVIMSAGELESE--------------RAGEPGKL-----------IR 123 (342)
Q Consensus 71 ~k~PlglgL~GPPG~GKTllaravA~~~g~~--~i~vs~~eL~s~--------------~~GEsEr~-----------iR 123 (342)
++.--.++|-|.+|||||+++|++.+-.... -|...+-++..- .+|-++.. =|
T Consensus 36 i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQr 115 (268)
T COG4608 36 IKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQR 115 (268)
T ss_pred EcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhh
Confidence 3444679999999999999999999765531 122232222111 12211111 13
Q ss_pred HHHHHHHHhhhhcCCceEEEeecccccC
Q 019334 124 ERYRTASQVVQNQGKMSCLMINDIDAGL 151 (342)
Q Consensus 124 ~~F~~A~e~~~~~~~PcILfIDEIDAg~ 151 (342)
+++.-|+..+ ..|.+|+.||.-+..
T Consensus 116 QRi~IARALa---l~P~liV~DEpvSaL 140 (268)
T COG4608 116 QRIGIARALA---LNPKLIVADEPVSAL 140 (268)
T ss_pred hhHHHHHHHh---hCCcEEEecCchhhc
Confidence 4455566554 579999999998865
No 460
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=96.73 E-value=0.0022 Score=66.00 Aligned_cols=84 Identities=17% Similarity=0.158 Sum_probs=49.2
Q ss_pred cccHHHHHHHHHHHHHHHHHhhcCCCCCeEEEeecCCCCCHHHHHHHHHHH----hCCceEEeecccccccccCCcHHHH
Q 019334 47 YIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQA----MGIEPVIMSAGELESERAGEPGKLI 122 (342)
Q Consensus 47 y~~~~f~d~l~~hi~K~~l~~~~~~k~PlglgL~GPPG~GKTllaravA~~----~g~~~i~vs~~eL~s~~~GEsEr~i 122 (342)
|-|+.|-++-..+.+...+. =+....-+.+.||||||||.++.+++.. .| -.++.+.|+.
T Consensus 185 ~~P~~~~~r~k~~~L~rl~~---fve~~~Nli~lGp~GTGKThla~~l~~~~a~~sG---~f~T~a~Lf~---------- 248 (449)
T TIGR02688 185 YEPEGFEARQKLLLLARLLP---LVEPNYNLIELGPKGTGKSYIYNNLSPYVILISG---GTITVAKLFY---------- 248 (449)
T ss_pred CCcccCChHHHHHHHHhhHH---HHhcCCcEEEECCCCCCHHHHHHHHhHHHHHHcC---CcCcHHHHHH----------
Confidence 45556655554444333211 1234567888999999999999998766 24 2233444442
Q ss_pred HHHHHHHHHhhhhcCCceEEEeeccccc
Q 019334 123 RERYRTASQVVQNQGKMSCLMINDIDAG 150 (342)
Q Consensus 123 R~~F~~A~e~~~~~~~PcILfIDEIDAg 150 (342)
++-. .....-++..+|.|||+--.
T Consensus 249 -~L~~---~~lg~v~~~DlLI~DEvgyl 272 (449)
T TIGR02688 249 -NIST---RQIGLVGRWDVVAFDEVATL 272 (449)
T ss_pred -HHHH---HHHhhhccCCEEEEEcCCCC
Confidence 1111 11111356899999999764
No 461
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=96.72 E-value=0.0022 Score=66.45 Aligned_cols=41 Identities=22% Similarity=0.248 Sum_probs=32.5
Q ss_pred EEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccccccCCc
Q 019334 76 ILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEP 118 (342)
Q Consensus 76 glgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~~~GEs 118 (342)
.+.|.|+||||||++++.+|+.+|++++..+ ++.....|.+
T Consensus 2 ~I~l~G~~GsGKSTv~~~La~~lg~~~id~D--~~i~~~~g~~ 42 (488)
T PRK13951 2 RIFLVGMMGSGKSTIGKRVSEVLDLQFIDMD--EEIERREGRS 42 (488)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCeEEECc--HHHHHHcCCC
Confidence 3788999999999999999999999888554 4454445544
No 462
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=96.71 E-value=0.0011 Score=65.98 Aligned_cols=57 Identities=18% Similarity=0.177 Sum_probs=49.5
Q ss_pred CCeEEEeecCCCCCHHHHHHHHHHHhCC--ceEEeecccccccccCCcHHHHHHHHHHHH
Q 019334 73 VPLILGIWGGKGQGKSFQTELIFQAMGI--EPVIMSAGELESERAGEPGKLIRERYRTAS 130 (342)
Q Consensus 73 ~PlglgL~GPPG~GKTllaravA~~~g~--~~i~vs~~eL~s~~~GEsEr~iR~~F~~A~ 130 (342)
.-+.+++.|+||+|||-+|-.+|+.+|- ||..++++|++|--.-.+| .+-++||++.
T Consensus 65 aGraiLiaG~pgtGKtAiAmg~sksLG~~tpF~~i~gSEI~SlEmsKTE-AltQAfRksi 123 (454)
T KOG2680|consen 65 AGRAILIAGQPGTGKTAIAMGMSKSLGDDTPFTSISGSEIYSLEMSKTE-ALTQAFRKSI 123 (454)
T ss_pred cceEEEEecCCCCCceeeeeehhhhhCCCCceeeeecceeeeecccHHH-HHHHHHHHhh
Confidence 3488999999999999999999999995 9999999999986666666 4578998875
No 463
>PTZ00035 Rad51 protein; Provisional
Probab=96.71 E-value=0.012 Score=58.34 Aligned_cols=28 Identities=14% Similarity=0.196 Sum_probs=22.2
Q ss_pred CCCCeEEEeecCCCCCHHHHHHHHHHHh
Q 019334 71 VKVPLILGIWGGKGQGKSFQTELIFQAM 98 (342)
Q Consensus 71 ~k~PlglgL~GPPG~GKTllaravA~~~ 98 (342)
+..-.++.|+||||||||.+|..+|...
T Consensus 115 i~~G~iteI~G~~GsGKT~l~~~l~~~~ 142 (337)
T PTZ00035 115 IETGSITELFGEFRTGKTQLCHTLCVTC 142 (337)
T ss_pred CCCCeEEEEECCCCCchhHHHHHHHHHh
Confidence 3333578899999999999999887543
No 464
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=96.70 E-value=0.0017 Score=58.47 Aligned_cols=121 Identities=18% Similarity=0.107 Sum_probs=56.7
Q ss_pred EEEeecCCCCCHHHHHHHH-HH---HhCCceEEeeccccc----ccccCCcHH--HH----------HHHHHHHHHhhhh
Q 019334 76 ILGIWGGKGQGKSFQTELI-FQ---AMGIEPVIMSAGELE----SERAGEPGK--LI----------RERYRTASQVVQN 135 (342)
Q Consensus 76 glgL~GPPG~GKTllarav-A~---~~g~~~i~vs~~eL~----s~~~GEsEr--~i----------R~~F~~A~e~~~~ 135 (342)
+.+++|.||+|||+.|-.. .. +-|-.++. +-.+|- .+..+..-+ .+ .+.+..-..
T Consensus 2 I~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~t-ni~gL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 76 (193)
T PF05707_consen 2 IYLITGKPGSGKSYYAVSYVIIPALKKGRPVYT-NIPGLNIEKIQPVLGYDIPTRLIDLSDPDFEEDWDDPDDWRK---- 76 (193)
T ss_dssp EEEEE--TTSSHHHHHHHHHHH-GGGS---EEE---TTB-S--EEEE--TTT-S-----S--SSSEEGGGHHHHTT----
T ss_pred EEEEEcCCCCcHhHHHHHHHHHHHHhCCCEEEE-ccCCcchhhhhhhccccccccccccccccchhhhhhhhhhcc----
Confidence 5789999999999988544 32 23555555 433222 222222211 00 011211111
Q ss_pred cCCceEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCCccCCCCCC
Q 019334 136 QGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDG 215 (342)
Q Consensus 136 ~~~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~~~LdpaLlRpG 215 (342)
....++|+|||+....+.+...+..+ .. .. ..+. ..+..+.-||.+|-+|+.||+.+++
T Consensus 77 ~~~~~liviDEa~~~~~~r~~~~~~~-~~-~~-~~l~----------------~hRh~g~diiliTQ~~~~id~~ir~-- 135 (193)
T PF05707_consen 77 LPKGSLIVIDEAQNFFPSRSWKGKKV-PE-II-EFLA----------------QHRHYGWDIILITQSPSQIDKFIRD-- 135 (193)
T ss_dssp SGTT-EEEETTGGGTSB---T-T-----H-HH-HGGG----------------GCCCTT-EEEEEES-GGGB-HHHHC--
T ss_pred cCCCcEEEEECChhhcCCCccccccc-hH-HH-HHHH----------------HhCcCCcEEEEEeCCHHHHhHHHHH--
Confidence 11579999999999887665321111 12 22 2222 1224578899999999999998764
Q ss_pred CCcceec
Q 019334 216 RMEKFYW 222 (342)
Q Consensus 216 RfD~~i~ 222 (342)
..+..+.
T Consensus 136 lve~~~~ 142 (193)
T PF05707_consen 136 LVEYHYH 142 (193)
T ss_dssp CEEEEEE
T ss_pred HHheEEE
Confidence 6666554
No 465
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=96.70 E-value=0.0031 Score=61.14 Aligned_cols=73 Identities=11% Similarity=0.162 Sum_probs=45.2
Q ss_pred CCCCeEEEeecCCCCCHHHHHHHHHHHhCC--ceEEe-eccccccc---c---------cCCcHHHHHHHHHHHHHhhhh
Q 019334 71 VKVPLILGIWGGKGQGKSFQTELIFQAMGI--EPVIM-SAGELESE---R---------AGEPGKLIRERYRTASQVVQN 135 (342)
Q Consensus 71 ~k~PlglgL~GPPG~GKTllaravA~~~g~--~~i~v-s~~eL~s~---~---------~GEsEr~iR~~F~~A~e~~~~ 135 (342)
++.-..++|.||+|+|||++.+++++.+.- ..+.+ +..|+.-. + .|.++-.+.++++.+.
T Consensus 141 v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied~~El~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~L----- 215 (308)
T TIGR02788 141 IASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIEDTREIFLPHPNYVHLFYSKGGQGLAKVTPKDLLQSCL----- 215 (308)
T ss_pred hhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcCccccCCCCCCEEEEEecCCCCCcCccCHHHHHHHHh-----
Confidence 345579999999999999999999977642 22222 11222111 0 1222233445554443
Q ss_pred cCCceEEEeeccc
Q 019334 136 QGKMSCLMINDID 148 (342)
Q Consensus 136 ~~~PcILfIDEID 148 (342)
+..|.+|++||+=
T Consensus 216 r~~pd~ii~gE~r 228 (308)
T TIGR02788 216 RMRPDRIILGELR 228 (308)
T ss_pred cCCCCeEEEeccC
Confidence 4569999999985
No 466
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.69 E-value=0.039 Score=59.39 Aligned_cols=34 Identities=12% Similarity=-0.089 Sum_probs=27.0
Q ss_pred CCeEEEeecCCCCCHHHHHHHHHHHhCCceEEeec
Q 019334 73 VPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSA 107 (342)
Q Consensus 73 ~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~ 107 (342)
..+.++|+||+|.|||+++...+...+ +++-++.
T Consensus 31 ~~~~~~v~apaG~GKTtl~~~~~~~~~-~~~w~~l 64 (903)
T PRK04841 31 NYRLVLVTSPAGYGKTTLISQWAAGKN-NLGWYSL 64 (903)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhCC-CeEEEec
Confidence 456799999999999999999888776 5544443
No 467
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=96.68 E-value=0.0056 Score=64.93 Aligned_cols=75 Identities=17% Similarity=0.192 Sum_probs=49.1
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHh---CCceEEeeccccccccc---CC----cHHHHHHHHHHHHHhhhhcCCceE
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQAM---GIEPVIMSAGELESERA---GE----PGKLIRERYRTASQVVQNQGKMSC 141 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~~---g~~~i~vs~~eL~s~~~---GE----sEr~iR~~F~~A~e~~~~~~~PcI 141 (342)
..|..+.+.|+||+|||++|++++.++ |...+.+++.++-.... +- .++.++.+...|+...+ .| .+
T Consensus 458 ~~~~~i~~~G~~gsGKst~a~~l~~~l~~~~~~~~~l~~D~~r~~l~~~~~~~~~~r~~~~~~l~~~a~~~~~-~G--~~ 534 (632)
T PRK05506 458 QKPATVWFTGLSGSGKSTIANLVERRLHALGRHTYLLDGDNVRHGLNRDLGFSDADRVENIRRVAEVARLMAD-AG--LI 534 (632)
T ss_pred CCcEEEEecCCCCchHHHHHHHHHHHHHHcCCCEEEEcChhhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHh-CC--CE
Confidence 358899999999999999999999996 45678888766543222 22 33555555555554432 33 45
Q ss_pred EEeecccccCC
Q 019334 142 LMINDIDAGLG 152 (342)
Q Consensus 142 LfIDEIDAg~~ 152 (342)
+.+| +.++
T Consensus 535 Vivd---a~~~ 542 (632)
T PRK05506 535 VLVS---FISP 542 (632)
T ss_pred EEEE---CCCC
Confidence 5544 5544
No 468
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=96.68 E-value=0.0053 Score=65.26 Aligned_cols=25 Identities=28% Similarity=0.397 Sum_probs=22.2
Q ss_pred eEEEeecCCCCCHHHHHHHHHHHhC
Q 019334 75 LILGIWGGKGQGKSFQTELIFQAMG 99 (342)
Q Consensus 75 lglgL~GPPG~GKTllaravA~~~g 99 (342)
--++|.||.|||||++++++++.+.
T Consensus 506 e~vaIvG~sGsGKSTLlklL~gl~~ 530 (710)
T TIGR03796 506 QRVALVGGSGSGKSTIAKLVAGLYQ 530 (710)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4689999999999999999997663
No 469
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.67 E-value=0.007 Score=54.34 Aligned_cols=75 Identities=19% Similarity=0.398 Sum_probs=49.4
Q ss_pred EEEeecCCCCCHHHHHHHHH---HHhCCceEE---eecc----cccc---------ccc--------CCcH---HHHHHH
Q 019334 76 ILGIWGGKGQGKSFQTELIF---QAMGIEPVI---MSAG----ELES---------ERA--------GEPG---KLIRER 125 (342)
Q Consensus 76 glgL~GPPG~GKTllaravA---~~~g~~~i~---vs~~----eL~s---------~~~--------GEsE---r~iR~~ 125 (342)
.+.||+++|.|||++|-++| ...|..... +.++ |+.. -.. .+++ +..++.
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l~~v~~~~~g~~~~~~~~~~~~~~~~a~~~ 83 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGGWKYGELKALERLPNIEIHRMGRGFFWTTENDEEDIAAAAEG 83 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCCCccCHHHHHHhCCCcEEEECCCCCccCCCChHHHHHHHHHH
Confidence 46789999999999997766 333555554 5553 1100 001 1122 356678
Q ss_pred HHHHHHhhhhcCCceEEEeecccccC
Q 019334 126 YRTASQVVQNQGKMSCLMINDIDAGL 151 (342)
Q Consensus 126 F~~A~e~~~~~~~PcILfIDEIDAg~ 151 (342)
++.|++.+. .+...+|++|||=...
T Consensus 84 ~~~a~~~~~-~~~~dLlVLDEi~~a~ 108 (159)
T cd00561 84 WAFAKEAIA-SGEYDLVILDEINYAL 108 (159)
T ss_pred HHHHHHHHh-cCCCCEEEEechHhHh
Confidence 888888776 7889999999997755
No 470
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=96.67 E-value=0.022 Score=60.54 Aligned_cols=174 Identities=11% Similarity=0.010 Sum_probs=93.4
Q ss_pred HHHHHHHHHhhcCCCC-C-eEEEeecCCCCCHHHHHHHHHHHhCC--ceEEeecccccccccCCc--HHHHHH---HHHH
Q 019334 58 CHIVKNYIAHLLNVKV-P-LILGIWGGKGQGKSFQTELIFQAMGI--EPVIMSAGELESERAGEP--GKLIRE---RYRT 128 (342)
Q Consensus 58 ~hi~K~~l~~~~~~k~-P-lglgL~GPPG~GKTllaravA~~~g~--~~i~vs~~eL~s~~~GEs--Er~iR~---~F~~ 128 (342)
..-+|..+. +.-+.+ - -||+|-|++|++||+++++++.-+.. +|+.+.-+-=.+..+|.. |+.|+. +|+
T Consensus 8 ~~~~~~Al~-l~av~p~~~gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~- 85 (584)
T PRK13406 8 WADAALAAA-LLAVDPAGLGGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQ- 85 (584)
T ss_pred HHHHHHHHH-HhCcCccccceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhHhhcCCcCCC-
Confidence 344555555 555555 3 37999999999999999999998754 776655544444444543 222211 010
Q ss_pred HHHhhhhcCCceEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCcccc--CccccccCCCCCccEEEeeCCC--
Q 019334 129 ASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSI--GQDWRESDITNRIPIIFTGNDF-- 204 (342)
Q Consensus 129 A~e~~~~~~~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l--~g~~~~~~~~~~V~VIatTNr~-- 204 (342)
--+++ ...--|||+||+--.- ..++..|++-|+. ..|.+ +|.- ...-.+-.+|+|-|-.
T Consensus 86 pGlla--~Ah~GvL~lDe~n~~~------------~~~~~aLleame~-G~vtIeR~G~s--~~~Pa~F~LIat~~~~~~ 148 (584)
T PRK13406 86 RGLLA--EADGGVLVLAMAERLE------------PGTAARLAAALDT-GEVRLERDGLA--LRLPARFGLVALDEGAEE 148 (584)
T ss_pred CCcee--eccCCEEEecCcccCC------------HHHHHHHHHHHhC-CcEEEEECCcE--EecCCCcEEEecCCChhc
Confidence 00111 1113699999986543 2355667776662 22333 3311 1101344555552322
Q ss_pred -CCCccCCCCCCCCcceecC--CCH-HH------HHHHHH--HHhhcCCCCHHHHHHHhh
Q 019334 205 -STIYAPLIRDGRMEKFYWQ--PNL-ED------ILNIVH--RMYEKDGITKDEVGSIVK 252 (342)
Q Consensus 205 -~~LdpaLlRpGRfD~~i~v--P~~-~~------R~~Il~--~~~~~~~~s~~di~~lvd 252 (342)
..|+++|+= |||-.+.+ |+. +. ...|.. ..+.+-.++.+.++.++.
T Consensus 149 ~~~L~~~lLD--Rf~l~v~v~~~~~~~~~~~~~~~~~I~~AR~rl~~v~v~~~~l~~i~~ 206 (584)
T PRK13406 149 DERAPAALAD--RLAFHLDLDGLALRDAREIPIDADDIAAARARLPAVGPPPEAIAALCA 206 (584)
T ss_pred ccCCCHHhHh--heEEEEEcCCCChHHhcccCCCHHHHHHHHHHHccCCCCHHHHHHHHH
Confidence 236777766 88877765 332 21 123332 333444567766666554
No 471
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=96.65 E-value=0.0056 Score=63.52 Aligned_cols=24 Identities=17% Similarity=0.288 Sum_probs=22.0
Q ss_pred eEEEeecCCCCCHHHHHHHHHHHh
Q 019334 75 LILGIWGGKGQGKSFQTELIFQAM 98 (342)
Q Consensus 75 lglgL~GPPG~GKTllaravA~~~ 98 (342)
..++|-||+|||||++++++++.+
T Consensus 377 ~~vaIvG~SGsGKSTL~~lL~g~~ 400 (588)
T PRK11174 377 QRIALVGPSGAGKTSLLNALLGFL 400 (588)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 568999999999999999999876
No 472
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.65 E-value=0.019 Score=56.48 Aligned_cols=35 Identities=20% Similarity=0.362 Sum_probs=27.2
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHh---CCceEEee
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQAM---GIEPVIMS 106 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~~---g~~~i~vs 106 (342)
+.|..++|.||||+|||+++..+|..+ |-.+..++
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~ 149 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAA 149 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEe
Confidence 357889999999999999999998765 43444443
No 473
>KOG2383 consensus Predicted ATPase [General function prediction only]
Probab=96.62 E-value=0.0057 Score=62.66 Aligned_cols=27 Identities=30% Similarity=0.489 Sum_probs=23.5
Q ss_pred CCCCeEEEeecCCCCCHHHHHHHHHHH
Q 019334 71 VKVPLILGIWGGKGQGKSFQTELIFQA 97 (342)
Q Consensus 71 ~k~PlglgL~GPPG~GKTllaravA~~ 97 (342)
.++|+||.|||--|||||++--+....
T Consensus 111 ~~~PkGlYlYG~VGcGKTmLMDlFy~~ 137 (467)
T KOG2383|consen 111 PGPPKGLYLYGSVGCGKTMLMDLFYDA 137 (467)
T ss_pred CCCCceEEEecccCcchhHHHHHHhhc
Confidence 457999999999999999999887743
No 474
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.62 E-value=0.0094 Score=60.17 Aligned_cols=83 Identities=17% Similarity=0.265 Sum_probs=53.4
Q ss_pred HHHHHHHhhcCCCCCeEEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccccccCCcHHHHHHHHHHHHHhhhhcCCc
Q 019334 60 IVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKM 139 (342)
Q Consensus 60 i~K~~l~~~~~~k~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~~~GEsEr~iR~~F~~A~e~~~~~~~P 139 (342)
....+.. .....++ .++|.||-+||||++.+.+.+...-..|-++--|+..... .+.+.++.-.+... .+.
T Consensus 25 ~~~~l~~-~~~~~~~-i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~~-----~l~d~~~~~~~~~~--~~~ 95 (398)
T COG1373 25 LLPRLIK-KLDLRPF-IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDRI-----ELLDLLRAYIELKE--REK 95 (398)
T ss_pred hhHHHHh-hcccCCc-EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcchh-----hHHHHHHHHHHhhc--cCC
Confidence 3334444 2333444 9999999999999999988888766677777777665322 22333333322221 145
Q ss_pred eEEEeecccccC
Q 019334 140 SCLMINDIDAGL 151 (342)
Q Consensus 140 cILfIDEIDAg~ 151 (342)
+.||||||...-
T Consensus 96 ~yifLDEIq~v~ 107 (398)
T COG1373 96 SYIFLDEIQNVP 107 (398)
T ss_pred ceEEEecccCch
Confidence 899999998753
No 475
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.61 E-value=0.0019 Score=56.50 Aligned_cols=25 Identities=16% Similarity=0.208 Sum_probs=22.8
Q ss_pred EEEeecCCCCCHHHHHHHHHHHhCC
Q 019334 76 ILGIWGGKGQGKSFQTELIFQAMGI 100 (342)
Q Consensus 76 glgL~GPPG~GKTllaravA~~~g~ 100 (342)
.++|.||||||||+++++++..++.
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~~~~ 27 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARARLAG 27 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCc
Confidence 5789999999999999999998864
No 476
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.60 E-value=0.011 Score=57.95 Aligned_cols=40 Identities=13% Similarity=0.117 Sum_probs=28.3
Q ss_pred CCCCeEEEeecCCCCCHHHHHHHHHHHhC---------CceEEeecccc
Q 019334 71 VKVPLILGIWGGKGQGKSFQTELIFQAMG---------IEPVIMSAGEL 110 (342)
Q Consensus 71 ~k~PlglgL~GPPG~GKTllaravA~~~g---------~~~i~vs~~eL 110 (342)
+..-.++.|+||||||||.+|..+|.... -..+.++.-+-
T Consensus 93 i~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~ 141 (316)
T TIGR02239 93 IETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGT 141 (316)
T ss_pred CCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCC
Confidence 34446889999999999999998875322 24466666553
No 477
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=96.60 E-value=0.01 Score=58.71 Aligned_cols=73 Identities=12% Similarity=0.158 Sum_probs=47.5
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHhCC--ceEEe-ecccccc-c-------c-----cCCcHHHHHHHHHHHHHhhhh
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQAMGI--EPVIM-SAGELES-E-------R-----AGEPGKLIRERYRTASQVVQN 135 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~~g~--~~i~v-s~~eL~s-~-------~-----~GEsEr~iR~~F~~A~e~~~~ 135 (342)
+....+++.||+|||||++.+|++....- .++.+ +..|+.- . + .|..+-...++.+.|.
T Consensus 158 ~~~~nili~G~tgSGKTTll~aL~~~ip~~~ri~tiEd~~El~l~~~~n~~~~~~~~~~~~~~~~~~~~ll~~~L----- 232 (332)
T PRK13900 158 ISKKNIIISGGTSTGKTTFTNAALREIPAIERLITVEDAREIVLSNHPNRVHLLASKGGQGRAKVTTQDLIEACL----- 232 (332)
T ss_pred HcCCcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEecCCCccccccCCCEEEEEecCCCCCcCcCcHHHHHHHHh-----
Confidence 45678999999999999999999987764 23333 2234431 0 0 1223334445555443
Q ss_pred cCCceEEEeecccc
Q 019334 136 QGKMSCLMINDIDA 149 (342)
Q Consensus 136 ~~~PcILfIDEIDA 149 (342)
+-.|..|++.||-.
T Consensus 233 R~~PD~IivGEiR~ 246 (332)
T PRK13900 233 RLRPDRIIVGELRG 246 (332)
T ss_pred ccCCCeEEEEecCC
Confidence 45799999999863
No 478
>PRK15453 phosphoribulokinase; Provisional
Probab=96.58 E-value=0.0031 Score=61.77 Aligned_cols=40 Identities=13% Similarity=0.256 Sum_probs=31.2
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHhC---CceEEeeccccc
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQAMG---IEPVIMSAGELE 111 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~~g---~~~i~vs~~eL~ 111 (342)
+.|.+++|.|+||||||++|++++..++ ++...+++.+.+
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh 45 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFH 45 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEeccccc
Confidence 3467899999999999999999998774 455566665544
No 479
>PRK13973 thymidylate kinase; Provisional
Probab=96.58 E-value=0.0056 Score=56.00 Aligned_cols=47 Identities=23% Similarity=0.381 Sum_probs=35.7
Q ss_pred eEEEeecCCCCCHHHHHHHHHHHh---CCceEEeecccccccccCCcHHHHHHHH
Q 019334 75 LILGIWGGKGQGKSFQTELIFQAM---GIEPVIMSAGELESERAGEPGKLIRERY 126 (342)
Q Consensus 75 lglgL~GPPG~GKTllaravA~~~---g~~~i~vs~~eL~s~~~GEsEr~iR~~F 126 (342)
+.+.|-|++|||||++++.+++.+ |.+++...-+. + ....+.||+.+
T Consensus 4 ~~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~~~~~p~--~---~~~g~~ir~~l 53 (213)
T PRK13973 4 RFITFEGGEGAGKSTQIRLLAERLRAAGYDVLVTREPG--G---SPGAEAIRHVL 53 (213)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEECCC--C---CchHHHHHHHH
Confidence 566779999999999999999999 88888776553 1 22355666655
No 480
>PLN02165 adenylate isopentenyltransferase
Probab=96.58 E-value=0.0023 Score=63.70 Aligned_cols=39 Identities=18% Similarity=0.126 Sum_probs=32.3
Q ss_pred CeEEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccc
Q 019334 74 PLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELES 112 (342)
Q Consensus 74 PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s 112 (342)
...+.|.||+|||||.++.++|+.++..+|..+.-.++.
T Consensus 43 g~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs~QvYk 81 (334)
T PLN02165 43 DKVVVIMGATGSGKSRLSVDLATRFPSEIINSDKMQVYD 81 (334)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHcCCceecCChheeEC
Confidence 347889999999999999999999998777766554544
No 481
>PRK10867 signal recognition particle protein; Provisional
Probab=96.58 E-value=0.042 Score=56.56 Aligned_cols=36 Identities=19% Similarity=0.329 Sum_probs=27.7
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHh----CCceEEeec
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQAM----GIEPVIMSA 107 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~~----g~~~i~vs~ 107 (342)
..|..+++.||||+|||+.|--+|..+ |..+..+++
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~ 137 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAA 137 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEc
Confidence 458899999999999999776666533 666666665
No 482
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=96.57 E-value=0.0057 Score=63.61 Aligned_cols=25 Identities=28% Similarity=0.388 Sum_probs=22.3
Q ss_pred eEEEeecCCCCCHHHHHHHHHHHhC
Q 019334 75 LILGIWGGKGQGKSFQTELIFQAMG 99 (342)
Q Consensus 75 lglgL~GPPG~GKTllaravA~~~g 99 (342)
-.++|-||+|||||++++++++.+.
T Consensus 362 ~~v~IvG~sGsGKSTLl~lL~gl~~ 386 (588)
T PRK13657 362 QTVAIVGPTGAGKSTLINLLQRVFD 386 (588)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCcC
Confidence 5689999999999999999997764
No 483
>PRK07429 phosphoribulokinase; Provisional
Probab=96.57 E-value=0.0026 Score=62.81 Aligned_cols=31 Identities=29% Similarity=0.449 Sum_probs=27.8
Q ss_pred CCCCeEEEeecCCCCCHHHHHHHHHHHhCCc
Q 019334 71 VKVPLILGIWGGKGQGKSFQTELIFQAMGIE 101 (342)
Q Consensus 71 ~k~PlglgL~GPPG~GKTllaravA~~~g~~ 101 (342)
.+.|.+|+|.||+|||||++++.+++.++..
T Consensus 5 ~~~~~IIgI~G~SGSGKSTla~~L~~ll~~~ 35 (327)
T PRK07429 5 PDRPVLLGVAGDSGCGKTTFLRGLADLLGEE 35 (327)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHhHhccC
Confidence 3678999999999999999999999998843
No 484
>PTZ00301 uridine kinase; Provisional
Probab=96.57 E-value=0.0029 Score=58.67 Aligned_cols=24 Identities=33% Similarity=0.542 Sum_probs=22.4
Q ss_pred eEEEeecCCCCCHHHHHHHHHHHh
Q 019334 75 LILGIWGGKGQGKSFQTELIFQAM 98 (342)
Q Consensus 75 lglgL~GPPG~GKTllaravA~~~ 98 (342)
.+|||.||||+|||++|+.++.++
T Consensus 4 ~iIgIaG~SgSGKTTla~~l~~~l 27 (210)
T PTZ00301 4 TVIGISGASGSGKSSLSTNIVSEL 27 (210)
T ss_pred EEEEEECCCcCCHHHHHHHHHHHH
Confidence 689999999999999999998876
No 485
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=96.56 E-value=0.022 Score=52.72 Aligned_cols=21 Identities=24% Similarity=0.154 Sum_probs=18.1
Q ss_pred EEeecCCCCCHHHHHHHHHHH
Q 019334 77 LGIWGGKGQGKSFQTELIFQA 97 (342)
Q Consensus 77 lgL~GPPG~GKTllaravA~~ 97 (342)
-+|.||||+|||+++-.+|..
T Consensus 4 ~ll~g~~G~GKS~lal~la~~ 24 (239)
T cd01125 4 SALVAPGGTGKSSLLLVLALA 24 (239)
T ss_pred eEEEcCCCCCHHHHHHHHHHH
Confidence 468899999999999888754
No 486
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=96.56 E-value=0.0051 Score=55.83 Aligned_cols=38 Identities=16% Similarity=0.110 Sum_probs=33.1
Q ss_pred eEEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccc
Q 019334 75 LILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELES 112 (342)
Q Consensus 75 lglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s 112 (342)
++|+|.|||-+|||++|+++...+.-++++++...+..
T Consensus 2 ~iI~LNG~sSSGKSsia~~Lq~~~~~p~~~l~~D~f~~ 39 (174)
T PF07931_consen 2 QIIILNGPSSSGKSSIARALQERLPEPWLHLSVDTFVD 39 (174)
T ss_dssp -EEEEEE-TTSSHHHHHHHHHHHSSS-EEEEEHHHHHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHHhCcCCeEEEecChHHh
Confidence 57999999999999999999999999999999987776
No 487
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=96.56 E-value=0.0065 Score=58.81 Aligned_cols=72 Identities=18% Similarity=0.088 Sum_probs=45.3
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHhCC--------ceEEee-cccccccccCCcHHHHH------------HHHHHHH
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQAMGI--------EPVIMS-AGELESERAGEPGKLIR------------ERYRTAS 130 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~~g~--------~~i~vs-~~eL~s~~~GEsEr~iR------------~~F~~A~ 130 (342)
+..+-.+|-||||||||++.|-+|.-+.. .+..++ .+|+-....|-|.--+- +....|.
T Consensus 135 ~g~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~~gmmmaI 214 (308)
T COG3854 135 NGWLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKAEGMMMAI 214 (308)
T ss_pred cCceeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchHHHHHHHHH
Confidence 45576888999999999998888865432 233333 35555544554432221 2233444
Q ss_pred HhhhhcCCceEEEeecc
Q 019334 131 QVVQNQGKMSCLMINDI 147 (342)
Q Consensus 131 e~~~~~~~PcILfIDEI 147 (342)
+ +..|-||++|||
T Consensus 215 r----sm~PEViIvDEI 227 (308)
T COG3854 215 R----SMSPEVIIVDEI 227 (308)
T ss_pred H----hcCCcEEEEecc
Confidence 4 456999999998
No 488
>PTZ00202 tuzin; Provisional
Probab=96.53 E-value=0.015 Score=60.75 Aligned_cols=39 Identities=26% Similarity=0.316 Sum_probs=32.3
Q ss_pred cCCCCCeEEEeecCCCCCHHHHHHHHHHHhCCceEEeec
Q 019334 69 LNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSA 107 (342)
Q Consensus 69 ~~~k~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~ 107 (342)
.....|.++.|.||+|||||++++.++..++.+.+.++.
T Consensus 281 ~d~~~privvLtG~~G~GKTTLlR~~~~~l~~~qL~vNp 319 (550)
T PTZ00202 281 LDTAHPRIVVFTGFRGCGKSSLCRSAVRKEGMPAVFVDV 319 (550)
T ss_pred cCCCCceEEEEECCCCCCHHHHHHHHHhcCCceEEEECC
Confidence 345678899999999999999999999999866555544
No 489
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=96.52 E-value=0.0089 Score=57.71 Aligned_cols=29 Identities=28% Similarity=0.234 Sum_probs=24.7
Q ss_pred CCCCCeEEEeecCCCCCHHHHHHHHHHHh
Q 019334 70 NVKVPLILGIWGGKGQGKSFQTELIFQAM 98 (342)
Q Consensus 70 ~~k~PlglgL~GPPG~GKTllaravA~~~ 98 (342)
..+.+..++|.||||||||+++..++..+
T Consensus 30 ~~~~~~~i~i~G~~G~GKttl~~~l~~~~ 58 (300)
T TIGR00750 30 YTGNAHRVGITGTPGAGKSTLLEALGMEL 58 (300)
T ss_pred ccCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 34567899999999999999999988754
No 490
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=96.52 E-value=0.005 Score=60.93 Aligned_cols=69 Identities=14% Similarity=0.245 Sum_probs=44.2
Q ss_pred CeEEEeecCCCCCHHHHHHHHHHHh-----CCceEEee-ccccccc------ccCCcHHHHHHHHHHHHHhhhhcCCceE
Q 019334 74 PLILGIWGGKGQGKSFQTELIFQAM-----GIEPVIMS-AGELESE------RAGEPGKLIRERYRTASQVVQNQGKMSC 141 (342)
Q Consensus 74 PlglgL~GPPG~GKTllaravA~~~-----g~~~i~vs-~~eL~s~------~~GEsEr~iR~~F~~A~e~~~~~~~PcI 141 (342)
...++|.||+|+|||++.+|++... +-.++.+- ..||.-. +....+-...++.+.|. +..|..
T Consensus 144 ~~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El~~~~~n~v~l~~~~~~~~~~lv~~aL-----R~~PD~ 218 (323)
T PRK13833 144 RLNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEIQCAAENAVALHTSDTVDMARLLKSTM-----RLRPDR 218 (323)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCcccccCCCCEEEeccCCCcCHHHHHHHHh-----CCCCCE
Confidence 4678999999999999999999876 23444443 3444321 11112223344444433 467999
Q ss_pred EEeecc
Q 019334 142 LMINDI 147 (342)
Q Consensus 142 LfIDEI 147 (342)
|++.||
T Consensus 219 IivGEi 224 (323)
T PRK13833 219 IIVGEV 224 (323)
T ss_pred EEEeec
Confidence 999998
No 491
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=96.52 E-value=0.0086 Score=62.26 Aligned_cols=26 Identities=23% Similarity=0.340 Sum_probs=22.8
Q ss_pred eEEEeecCCCCCHHHHHHHHHHHhCC
Q 019334 75 LILGIWGGKGQGKSFQTELIFQAMGI 100 (342)
Q Consensus 75 lglgL~GPPG~GKTllaravA~~~g~ 100 (342)
-.++|-||.|||||++++++++.+.-
T Consensus 368 e~iaIvG~SGsGKSTLl~lL~gl~~p 393 (592)
T PRK10790 368 GFVALVGHTGSGKSTLASLLMGYYPL 393 (592)
T ss_pred CEEEEECCCCCCHHHHHHHHhcccCC
Confidence 46899999999999999999987743
No 492
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=96.50 E-value=0.015 Score=59.95 Aligned_cols=26 Identities=15% Similarity=0.120 Sum_probs=20.7
Q ss_pred CCCCCeEEEeecCCCCCHHHHHHHHH
Q 019334 70 NVKVPLILGIWGGKGQGKSFQTELIF 95 (342)
Q Consensus 70 ~~k~PlglgL~GPPG~GKTllaravA 95 (342)
|+.....++|.|+||+|||++|..++
T Consensus 27 G~p~Gs~~li~G~pGsGKT~l~~qf~ 52 (509)
T PRK09302 27 GLPKGRPTLVSGTAGTGKTLFALQFL 52 (509)
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 34444679999999999999998654
No 493
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.49 E-value=0.019 Score=53.71 Aligned_cols=25 Identities=20% Similarity=-0.053 Sum_probs=21.6
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHH
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQ 96 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~ 96 (342)
+....++|.||.|+|||++.+.++.
T Consensus 29 ~~g~~~~itG~N~~GKStll~~i~~ 53 (222)
T cd03287 29 EGGYCQIITGPNMGGKSSYIRQVAL 53 (222)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4446789999999999999999886
No 494
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=96.49 E-value=0.0037 Score=57.08 Aligned_cols=36 Identities=33% Similarity=0.612 Sum_probs=28.9
Q ss_pred eEEEeecCCCCCHHHHHHHHHHHhCCceEEeeccccccc
Q 019334 75 LILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESE 113 (342)
Q Consensus 75 lglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~ 113 (342)
..++|.|++|||||++++.++. .|+ ..+++.++...
T Consensus 2 ~~igitG~igsGKst~~~~l~~-~g~--~vid~D~i~~~ 37 (200)
T PRK14734 2 LRIGLTGGIGSGKSTVADLLSS-EGF--LIVDADQVARD 37 (200)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCC--eEEeCcHHHHH
Confidence 3699999999999999999997 675 45777755443
No 495
>PRK14738 gmk guanylate kinase; Provisional
Probab=96.49 E-value=0.0026 Score=58.04 Aligned_cols=27 Identities=26% Similarity=0.289 Sum_probs=23.6
Q ss_pred CCCCeEEEeecCCCCCHHHHHHHHHHH
Q 019334 71 VKVPLILGIWGGKGQGKSFQTELIFQA 97 (342)
Q Consensus 71 ~k~PlglgL~GPPG~GKTllaravA~~ 97 (342)
.+.|+.+.|.||||||||++++++.+.
T Consensus 10 ~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 10 PAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 456789999999999999999999754
No 496
>PRK04328 hypothetical protein; Provisional
Probab=96.49 E-value=0.014 Score=54.95 Aligned_cols=37 Identities=24% Similarity=0.346 Sum_probs=24.9
Q ss_pred CCCCeEEEeecCCCCCHHHHHHHHHH---HhCCceEEeec
Q 019334 71 VKVPLILGIWGGKGQGKSFQTELIFQ---AMGIEPVIMSA 107 (342)
Q Consensus 71 ~k~PlglgL~GPPG~GKTllaravA~---~~g~~~i~vs~ 107 (342)
+.....++|.||||||||.+|-.++. +.|-+.+.++.
T Consensus 20 ip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ 59 (249)
T PRK04328 20 IPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVAL 59 (249)
T ss_pred CcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEe
Confidence 43446799999999999999875543 23444444443
No 497
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=96.49 E-value=0.003 Score=59.57 Aligned_cols=32 Identities=34% Similarity=0.660 Sum_probs=28.0
Q ss_pred CCeEEEeecCCCCCHHHHHHHHHHHhCCceEE
Q 019334 73 VPLILGIWGGKGQGKSFQTELIFQAMGIEPVI 104 (342)
Q Consensus 73 ~PlglgL~GPPG~GKTllaravA~~~g~~~i~ 104 (342)
.+.+|||.|++|||||++|+.++..++.+.+.
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~~~~~~~ 38 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQLGVEKVV 38 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHhCcCcce
Confidence 34899999999999999999999999976333
No 498
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.47 E-value=0.024 Score=55.63 Aligned_cols=22 Identities=18% Similarity=0.211 Sum_probs=19.2
Q ss_pred eEEEeecCCCCCHHHHHHHHHH
Q 019334 75 LILGIWGGKGQGKSFQTELIFQ 96 (342)
Q Consensus 75 lglgL~GPPG~GKTllaravA~ 96 (342)
.+..|+||||||||.+|-.+|-
T Consensus 97 ~iteI~G~~GsGKTql~lqla~ 118 (313)
T TIGR02238 97 SITEVFGEFRCGKTQLSHTLCV 118 (313)
T ss_pred eEEEEECCCCCCcCHHHHHHHH
Confidence 5788999999999999987663
No 499
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=96.46 E-value=0.01 Score=54.10 Aligned_cols=75 Identities=13% Similarity=0.298 Sum_probs=50.5
Q ss_pred EEEeecCCCCCHHHHHHHHH---HHhCCceEEe-------ecccccc---------------cccCC----cHHHHHHHH
Q 019334 76 ILGIWGGKGQGKSFQTELIF---QAMGIEPVIM-------SAGELES---------------ERAGE----PGKLIRERY 126 (342)
Q Consensus 76 glgL~GPPG~GKTllaravA---~~~g~~~i~v-------s~~eL~s---------------~~~GE----sEr~iR~~F 126 (342)
.+.||+++|.|||+.|-.+| ...|.+++.+ ..+|+.. .|..+ ..+..++.+
T Consensus 7 li~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~ 86 (173)
T TIGR00708 7 IIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKGAWPNGERAAFEPHGVEFQVMGTGFTWETQNREADTAIAKAAW 86 (173)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCcccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHHHHHHH
Confidence 45678889999999997776 3345555433 2344211 11111 136688889
Q ss_pred HHHHHhhhhcCCceEEEeecccccC
Q 019334 127 RTASQVVQNQGKMSCLMINDIDAGL 151 (342)
Q Consensus 127 ~~A~e~~~~~~~PcILfIDEIDAg~ 151 (342)
+.|++.+. .+...+|++|||=...
T Consensus 87 ~~a~~~l~-~~~~DlvVLDEi~~A~ 110 (173)
T TIGR00708 87 QHAKEMLA-DPELDLVLLDELTYAL 110 (173)
T ss_pred HHHHHHHh-cCCCCEEEehhhHHHH
Confidence 89988876 7889999999997654
No 500
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=96.45 E-value=0.0049 Score=61.46 Aligned_cols=53 Identities=11% Similarity=0.094 Sum_probs=41.1
Q ss_pred EEeecCCCCCHHHHHHHHHHH----hCCceEEeeccccc-----ccccCCcHHHHHHHHHHH
Q 019334 77 LGIWGGKGQGKSFQTELIFQA----MGIEPVIMSAGELE-----SERAGEPGKLIRERYRTA 129 (342)
Q Consensus 77 lgL~GPPG~GKTllaravA~~----~g~~~i~vs~~eL~-----s~~~GEsEr~iR~~F~~A 129 (342)
+.|.|+||||||+++++++.. .|.++..++..+++ ..-.|-+...+=..||+.
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~i~~~~~~~~~~~~~~~~~k~~R~~ 63 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDIIPEAAFELDQSREIPSQWKQFRQE 63 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEcccccccccchhhhcCCCcHHHHHHHHHH
Confidence 468899999999999999844 56789999999988 555666666666666644
Done!