Query 019334
Match_columns 342
No_of_seqs 225 out of 644
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 14:29:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019334.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019334hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3t15_A Ribulose bisphosphate c 100.0 5E-66 1.7E-70 484.1 20.8 292 38-335 1-293 (293)
2 4b4t_J 26S protease regulatory 100.0 8.7E-46 3E-50 367.6 22.9 209 51-280 146-372 (405)
3 4b4t_I 26S protease regulatory 100.0 4.8E-45 1.6E-49 365.1 20.5 210 50-280 179-406 (437)
4 4b4t_L 26S protease subunit RP 100.0 5.8E-44 2E-48 357.1 24.0 208 51-279 179-404 (437)
5 4b4t_M 26S protease regulatory 100.0 2.9E-44 1E-48 359.0 21.4 206 50-279 178-404 (434)
6 4b4t_H 26S protease regulatory 100.0 9.8E-44 3.4E-48 358.2 21.4 206 51-280 207-433 (467)
7 4b4t_K 26S protease regulatory 100.0 3.6E-43 1.2E-47 350.4 20.4 208 51-279 170-396 (428)
8 3cf2_A TER ATPase, transitiona 100.0 3.5E-41 1.2E-45 358.0 10.0 201 53-274 477-695 (806)
9 3cf2_A TER ATPase, transitiona 100.0 1.6E-38 5.6E-43 337.6 16.4 172 68-257 232-409 (806)
10 3thg_A Ribulose bisphosphate c 100.0 2.6E-36 8.9E-41 250.0 9.0 102 225-329 6-107 (107)
11 2x8a_A Nuclear valosin-contain 100.0 2.3E-33 7.9E-38 261.5 16.4 210 51-280 8-236 (274)
12 1xwi_A SKD1 protein; VPS4B, AA 100.0 1.6E-32 5.3E-37 260.6 17.4 186 71-279 42-232 (322)
13 3cf0_A Transitional endoplasmi 100.0 9.1E-33 3.1E-37 258.4 14.8 171 69-257 44-223 (301)
14 3eie_A Vacuolar protein sortin 100.0 7.6E-32 2.6E-36 253.9 14.7 181 70-273 47-231 (322)
15 2ce7_A Cell division protein F 100.0 2.7E-31 9.1E-36 267.7 18.3 171 69-256 44-219 (476)
16 2qp9_X Vacuolar protein sortin 100.0 2.4E-31 8.4E-36 255.4 14.2 187 70-279 80-270 (355)
17 2zan_A Vacuolar protein sortin 100.0 1.8E-30 6E-35 256.9 15.9 207 45-274 126-349 (444)
18 3h4m_A Proteasome-activating n 100.0 1.2E-29 4E-34 231.2 19.8 171 69-256 46-224 (285)
19 1lv7_A FTSH; alpha/beta domain 100.0 6.2E-30 2.1E-34 231.2 17.2 170 70-256 41-215 (257)
20 2qz4_A Paraplegin; AAA+, SPG7, 100.0 2.7E-30 9.1E-35 231.3 12.1 158 69-243 34-196 (262)
21 3hu3_A Transitional endoplasmi 100.0 1.1E-29 3.7E-34 256.0 17.1 189 69-279 233-424 (489)
22 2dhr_A FTSH; AAA+ protein, hex 100.0 3.2E-29 1.1E-33 253.9 15.8 171 69-256 59-234 (499)
23 1ypw_A Transitional endoplasmi 100.0 1E-30 3.4E-35 276.7 2.9 156 70-242 507-666 (806)
24 1ixz_A ATP-dependent metallopr 100.0 1E-27 3.4E-32 216.4 20.0 171 69-256 44-219 (254)
25 3d8b_A Fidgetin-like protein 1 100.0 6.3E-28 2.2E-32 231.2 16.1 181 72-274 115-299 (357)
26 2r62_A Cell division protease 100.0 1.7E-29 5.8E-34 228.7 4.6 158 69-242 39-201 (268)
27 3b9p_A CG5977-PA, isoform A; A 100.0 3.8E-28 1.3E-32 222.9 13.5 182 72-274 52-237 (297)
28 3vfd_A Spastin; ATPase, microt 99.9 2.7E-27 9.3E-32 228.2 14.8 206 46-273 108-329 (389)
29 1iy2_A ATP-dependent metallopr 99.9 3.5E-26 1.2E-30 210.1 20.7 171 69-256 68-243 (278)
30 1ypw_A Transitional endoplasmi 99.9 1.6E-25 5.3E-30 237.1 19.5 166 69-252 233-401 (806)
31 2c9o_A RUVB-like 1; hexameric 99.9 3.7E-28 1.3E-32 240.1 -5.2 156 69-237 58-239 (456)
32 1d2n_A N-ethylmaleimide-sensit 99.9 3.6E-22 1.2E-26 182.2 16.4 166 69-256 59-228 (272)
33 3syl_A Protein CBBX; photosynt 99.9 3.6E-21 1.2E-25 176.7 16.5 154 72-252 65-234 (309)
34 1g41_A Heat shock protein HSLU 99.9 1.6E-22 5.3E-27 202.9 7.3 134 73-233 49-188 (444)
35 1ofh_A ATP-dependent HSL prote 99.8 1.8E-20 6.1E-25 170.6 10.9 157 72-234 48-212 (310)
36 3hws_A ATP-dependent CLP prote 99.8 1.1E-20 3.9E-25 179.9 8.4 103 73-176 50-156 (363)
37 3m6a_A ATP-dependent protease 99.8 1.5E-19 5.3E-24 183.4 12.4 168 73-256 107-297 (543)
38 1jbk_A CLPB protein; beta barr 99.8 1E-20 3.5E-25 157.4 1.9 135 72-233 41-194 (195)
39 3pfi_A Holliday junction ATP-d 99.8 1.1E-18 3.7E-23 162.8 12.2 158 72-257 53-219 (338)
40 3uk6_A RUVB-like 2; hexameric 99.8 1.1E-17 3.6E-22 157.2 16.8 155 70-252 66-289 (368)
41 2p65_A Hypothetical protein PF 99.7 1.7E-18 5.8E-23 144.7 3.5 124 72-220 41-181 (187)
42 1qvr_A CLPB protein; coiled co 99.7 2.9E-17 9.9E-22 174.0 12.3 154 72-251 189-365 (854)
43 3u61_B DNA polymerase accessor 99.7 1.7E-17 5.9E-22 154.1 8.9 159 59-254 36-205 (324)
44 1r6b_X CLPA protein; AAA+, N-t 99.7 1.8E-16 6.3E-21 164.6 17.3 155 71-251 204-382 (758)
45 1hqc_A RUVB; extended AAA-ATPa 99.7 4E-17 1.4E-21 150.4 10.9 160 72-257 36-203 (324)
46 1um8_A ATP-dependent CLP prote 99.7 5.2E-17 1.8E-21 155.0 10.9 143 72-219 70-224 (376)
47 4fcw_A Chaperone protein CLPB; 99.7 9.6E-16 3.3E-20 140.4 16.1 182 51-254 24-258 (311)
48 1l8q_A Chromosomal replication 99.7 2E-16 6.7E-21 147.6 10.5 167 56-254 21-198 (324)
49 2chg_A Replication factor C sm 99.7 5.8E-16 2E-20 131.5 12.1 147 76-256 40-195 (226)
50 1sxj_A Activator 1 95 kDa subu 99.7 3.9E-17 1.3E-21 163.9 5.4 155 73-256 76-243 (516)
51 3pxi_A Negative regulator of g 99.7 3.2E-16 1.1E-20 163.4 11.8 138 72-251 199-358 (758)
52 3pxg_A Negative regulator of g 99.6 3.7E-16 1.3E-20 155.5 11.4 138 72-251 199-358 (468)
53 2v1u_A Cell division control p 99.6 1E-15 3.5E-20 142.3 13.3 158 71-252 41-233 (387)
54 3pvs_A Replication-associated 99.6 1.7E-16 5.9E-21 158.0 8.0 145 74-256 50-206 (447)
55 1r6b_X CLPA protein; AAA+, N-t 99.6 2.4E-15 8.1E-20 156.3 15.4 155 73-252 486-692 (758)
56 1njg_A DNA polymerase III subu 99.6 1E-15 3.4E-20 130.8 9.8 156 72-256 43-219 (250)
57 2chq_A Replication factor C sm 99.6 1.6E-15 5.6E-20 138.0 9.7 175 47-256 11-195 (319)
58 2qby_B CDC6 homolog 3, cell di 99.6 8.7E-15 3E-19 137.2 14.0 148 71-252 42-229 (384)
59 3pxi_A Negative regulator of g 99.6 8.2E-15 2.8E-19 152.8 15.1 155 72-252 518-701 (758)
60 3bos_A Putative DNA replicatio 99.6 7E-15 2.4E-19 127.8 12.1 156 58-256 40-208 (242)
61 3te6_A Regulatory protein SIR3 99.6 3.4E-15 1.2E-19 143.7 10.8 138 71-238 42-212 (318)
62 2z4s_A Chromosomal replication 99.6 5.7E-15 2E-19 146.0 11.3 168 56-256 115-297 (440)
63 1sxj_D Activator 1 41 kDa subu 99.6 7.2E-15 2.5E-19 136.2 9.1 146 77-256 61-226 (353)
64 2qby_A CDC6 homolog 1, cell di 99.5 1.7E-14 5.8E-19 133.7 10.2 155 72-252 43-229 (386)
65 1iqp_A RFCS; clamp loader, ext 99.5 9E-15 3.1E-19 133.6 7.2 150 72-256 45-203 (327)
66 2r44_A Uncharacterized protein 99.5 3.8E-14 1.3E-18 132.2 11.6 138 75-239 47-200 (331)
67 1fnn_A CDC6P, cell division co 99.5 8.4E-14 2.9E-18 130.1 13.8 152 76-254 46-227 (389)
68 1g8p_A Magnesium-chelatase 38 99.5 5.8E-15 2E-19 137.0 5.6 146 75-236 46-231 (350)
69 3n70_A Transport activator; si 99.5 2E-14 6.7E-19 120.6 7.6 103 73-219 23-128 (145)
70 1sxj_B Activator 1 37 kDa subu 99.5 3.8E-14 1.3E-18 129.3 9.2 151 72-257 41-201 (323)
71 3co5_A Putative two-component 99.5 8.5E-15 2.9E-19 122.7 4.3 101 73-219 26-126 (143)
72 1in4_A RUVB, holliday junction 99.5 1.1E-12 3.7E-17 124.3 18.6 159 72-257 49-215 (334)
73 3cmw_A Protein RECA, recombina 99.5 1.2E-14 4.1E-19 164.6 5.5 114 73-205 1079-1219(1706)
74 1qvr_A CLPB protein; coiled co 99.5 2.8E-13 9.6E-18 143.5 15.6 153 75-252 589-796 (854)
75 1jr3_A DNA polymerase III subu 99.5 7.7E-14 2.6E-18 130.3 8.7 150 72-256 36-212 (373)
76 4akg_A Glutathione S-transfera 99.4 8.4E-14 2.9E-18 163.0 9.0 155 57-238 1256-1432(2695)
77 1ojl_A Transcriptional regulat 99.4 1.5E-13 5.2E-18 129.4 7.6 154 72-252 23-214 (304)
78 1sxj_E Activator 1 40 kDa subu 99.4 4.2E-13 1.4E-17 125.2 10.0 147 72-252 35-224 (354)
79 3nbx_X ATPase RAVA; AAA+ ATPas 99.4 8.8E-14 3E-18 141.0 5.3 157 75-252 42-219 (500)
80 3f9v_A Minichromosome maintena 99.4 2.3E-14 8E-19 147.3 -0.2 137 76-239 329-492 (595)
81 2bjv_A PSP operon transcriptio 99.4 2.4E-13 8.2E-18 123.1 5.9 137 73-231 28-184 (265)
82 1a5t_A Delta prime, HOLB; zinc 99.4 9.9E-12 3.4E-16 117.7 16.4 151 71-256 21-196 (334)
83 1sxj_C Activator 1 40 kDa subu 99.3 3.7E-12 1.3E-16 119.9 10.8 154 60-251 36-198 (340)
84 3ec2_A DNA replication protein 99.3 1.5E-12 5E-17 111.4 6.2 86 53-150 18-112 (180)
85 1svm_A Large T antigen; AAA+ f 99.2 4.6E-11 1.6E-15 117.2 10.8 119 69-225 164-284 (377)
86 1w5s_A Origin recognition comp 99.2 8.3E-11 2.8E-15 110.9 11.8 162 73-255 49-250 (412)
87 2w58_A DNAI, primosome compone 99.2 4.6E-11 1.6E-15 103.4 8.5 88 57-151 37-128 (202)
88 2vhj_A Ntpase P4, P4; non- hyd 99.1 1.4E-10 4.9E-15 112.7 7.0 117 74-211 123-242 (331)
89 2gno_A DNA polymerase III, gam 99.0 1.3E-09 4.4E-14 103.4 11.7 135 74-247 18-159 (305)
90 2qgz_A Helicase loader, putati 99.0 4E-10 1.4E-14 106.5 5.9 86 57-150 136-226 (308)
91 2kjq_A DNAA-related protein; s 99.0 1.3E-09 4.4E-14 92.8 8.0 59 73-151 35-96 (149)
92 3k1j_A LON protease, ATP-depen 98.9 2.1E-10 7.2E-15 117.3 2.0 101 138-253 201-326 (604)
93 2qen_A Walker-type ATPase; unk 98.8 6.5E-08 2.2E-12 88.5 13.8 159 75-258 32-239 (350)
94 3cmu_A Protein RECA, recombina 98.7 5.9E-09 2E-13 120.1 6.3 78 71-153 1424-1520(2050)
95 2fna_A Conserved hypothetical 98.7 2.5E-08 8.5E-13 91.3 8.3 35 75-109 31-65 (357)
96 1tue_A Replication protein E1; 98.7 1.8E-08 6.1E-13 92.7 7.2 113 58-206 45-159 (212)
97 2r2a_A Uncharacterized protein 98.6 3.2E-08 1.1E-12 88.8 6.4 123 73-223 4-150 (199)
98 1ny5_A Transcriptional regulat 98.6 1.1E-07 3.8E-12 92.3 9.0 129 75-230 161-314 (387)
99 4akg_A Glutathione S-transfera 98.5 1.6E-07 5.4E-12 110.8 10.5 136 73-233 644-789 (2695)
100 3vkg_A Dynein heavy chain, cyt 98.5 9.5E-08 3.2E-12 113.9 7.9 157 57-238 1293-1470(3245)
101 2cvh_A DNA repair and recombin 98.5 8.6E-07 3E-11 76.5 11.1 81 70-152 16-119 (220)
102 1qhx_A CPT, protein (chloramph 98.4 7E-07 2.4E-11 75.2 7.3 37 74-110 3-39 (178)
103 3dzd_A Transcriptional regulat 98.3 5.2E-07 1.8E-11 87.2 6.4 128 75-229 153-304 (368)
104 2p5t_B PEZT; postsegregational 98.3 2.3E-06 7.9E-11 77.7 10.3 63 47-110 6-68 (253)
105 3cmu_A Protein RECA, recombina 98.3 9E-07 3.1E-11 102.3 9.1 82 70-152 728-824 (2050)
106 1n0w_A DNA repair protein RAD5 98.3 2.6E-06 8.7E-11 74.6 9.1 82 70-152 20-133 (243)
107 1gvn_B Zeta; postsegregational 98.3 3.3E-06 1.1E-10 78.9 9.9 62 49-110 8-69 (287)
108 1u0j_A DNA replication protein 98.2 7.7E-07 2.6E-11 84.1 4.4 40 57-100 89-130 (267)
109 1ye8_A Protein THEP1, hypothet 98.2 2.8E-06 9.7E-11 74.2 7.2 28 76-103 2-29 (178)
110 2w0m_A SSO2452; RECA, SSPF, un 98.1 8.4E-06 2.9E-10 70.2 8.8 38 70-107 19-59 (235)
111 3umf_A Adenylate kinase; rossm 98.1 1.7E-06 5.8E-11 78.8 4.4 43 69-113 24-66 (217)
112 2zr9_A Protein RECA, recombina 98.1 6.3E-06 2.1E-10 79.5 8.1 83 70-153 57-154 (349)
113 3trf_A Shikimate kinase, SK; a 98.1 3.3E-06 1.1E-10 71.6 5.2 44 73-118 4-47 (185)
114 1zuh_A Shikimate kinase; alpha 98.0 6.7E-06 2.3E-10 69.0 6.5 42 75-118 8-49 (168)
115 3a4m_A L-seryl-tRNA(SEC) kinas 98.0 9.9E-06 3.4E-10 73.9 8.1 71 73-146 3-79 (260)
116 2rhm_A Putative kinase; P-loop 98.0 4.1E-06 1.4E-10 71.0 4.5 34 71-104 2-35 (193)
117 3hr8_A Protein RECA; alpha and 98.0 9.7E-06 3.3E-10 79.0 7.7 82 70-152 57-153 (356)
118 1via_A Shikimate kinase; struc 98.0 9E-06 3.1E-10 68.8 6.4 41 76-118 6-46 (175)
119 4a74_A DNA repair and recombin 98.0 9.4E-06 3.2E-10 70.3 6.3 29 70-98 21-49 (231)
120 1kag_A SKI, shikimate kinase I 98.0 7.2E-06 2.5E-10 68.6 5.2 43 74-118 4-46 (173)
121 1ly1_A Polynucleotide kinase; 98.0 1.7E-05 5.8E-10 66.1 7.4 35 74-110 2-37 (181)
122 1tev_A UMP-CMP kinase; ploop, 97.9 5.5E-06 1.9E-10 69.8 4.2 37 74-112 3-39 (196)
123 3vaa_A Shikimate kinase, SK; s 97.9 7.9E-06 2.7E-10 71.0 5.3 46 71-118 22-67 (199)
124 1xp8_A RECA protein, recombina 97.9 4E-05 1.4E-09 74.7 10.8 83 70-153 70-167 (366)
125 2ehv_A Hypothetical protein PH 97.9 2.3E-05 7.7E-10 68.7 8.2 38 70-107 26-67 (251)
126 3cmw_A Protein RECA, recombina 97.9 6E-06 2.1E-10 94.3 5.5 82 70-152 728-824 (1706)
127 2cdn_A Adenylate kinase; phosp 97.9 8E-06 2.7E-10 70.6 4.7 40 71-112 17-56 (201)
128 3sr0_A Adenylate kinase; phosp 97.9 5.4E-06 1.8E-10 74.4 3.7 35 76-112 2-36 (206)
129 2c95_A Adenylate kinase 1; tra 97.9 8E-06 2.7E-10 69.3 4.2 39 72-112 7-45 (196)
130 1qf9_A UMP/CMP kinase, protein 97.9 1E-05 3.5E-10 68.0 4.6 39 72-112 4-42 (194)
131 1pzn_A RAD51, DNA repair and r 97.9 4.2E-05 1.4E-09 73.5 9.4 80 71-151 128-244 (349)
132 1zp6_A Hypothetical protein AT 97.9 8.5E-06 2.9E-10 69.2 4.0 40 71-110 6-45 (191)
133 3iij_A Coilin-interacting nucl 97.9 9.4E-06 3.2E-10 68.8 4.2 34 72-105 9-42 (180)
134 2iyv_A Shikimate kinase, SK; t 97.9 7.3E-06 2.5E-10 69.6 3.5 42 75-118 3-44 (184)
135 2pt5_A Shikimate kinase, SK; a 97.9 2.5E-05 8.4E-10 65.0 6.6 41 76-118 2-42 (168)
136 2bwj_A Adenylate kinase 5; pho 97.9 8.6E-06 2.9E-10 69.3 3.9 38 73-112 11-48 (199)
137 1aky_A Adenylate kinase; ATP:A 97.8 1E-05 3.5E-10 71.0 4.3 39 72-112 2-40 (220)
138 1ukz_A Uridylate kinase; trans 97.8 1.2E-05 4.3E-10 69.2 4.7 39 72-112 13-51 (203)
139 3lw7_A Adenylate kinase relate 97.8 9.8E-06 3.4E-10 66.3 3.8 30 75-105 2-31 (179)
140 3kb2_A SPBC2 prophage-derived 97.8 1.3E-05 4.5E-10 66.3 4.5 36 75-112 2-37 (173)
141 3tlx_A Adenylate kinase 2; str 97.8 1.4E-05 4.7E-10 72.4 4.5 41 71-113 26-66 (243)
142 1jjv_A Dephospho-COA kinase; P 97.8 1.6E-05 5.5E-10 68.8 4.7 36 74-112 2-37 (206)
143 2dr3_A UPF0273 protein PH0284; 97.8 7.1E-05 2.4E-09 65.4 8.7 38 70-107 19-59 (247)
144 3cm0_A Adenylate kinase; ATP-b 97.8 1.6E-05 5.4E-10 67.3 4.3 38 73-112 3-40 (186)
145 1zd8_A GTP:AMP phosphotransfer 97.8 1.3E-05 4.3E-10 70.9 3.8 39 72-112 5-43 (227)
146 2ze6_A Isopentenyl transferase 97.8 7.2E-05 2.5E-09 68.2 8.9 33 75-107 2-34 (253)
147 1y63_A LMAJ004144AAA protein; 97.8 1.5E-05 5.2E-10 68.5 4.0 32 73-104 9-41 (184)
148 1kht_A Adenylate kinase; phosp 97.8 1.3E-05 4.4E-10 67.5 3.4 26 74-99 3-28 (192)
149 2vli_A Antibiotic resistance p 97.8 1.4E-05 4.8E-10 67.2 3.6 31 73-103 4-34 (183)
150 3lda_A DNA repair protein RAD5 97.7 0.00011 3.9E-09 72.4 10.2 81 71-152 175-287 (400)
151 1cr0_A DNA primase/helicase; R 97.7 0.00014 4.9E-09 66.6 10.2 37 70-106 31-71 (296)
152 3t61_A Gluconokinase; PSI-biol 97.7 2E-05 6.8E-10 68.2 4.3 38 72-111 16-53 (202)
153 4eun_A Thermoresistant glucoki 97.7 2.3E-05 7.8E-10 68.1 4.6 38 72-111 27-64 (200)
154 3uie_A Adenylyl-sulfate kinase 97.7 8.1E-05 2.8E-09 64.6 7.7 39 72-110 23-64 (200)
155 1uj2_A Uridine-cytidine kinase 97.7 3.4E-05 1.2E-09 69.6 5.5 42 72-113 20-69 (252)
156 2pez_A Bifunctional 3'-phospho 97.7 6.6E-05 2.3E-09 63.6 7.0 39 72-110 3-44 (179)
157 2z0h_A DTMP kinase, thymidylat 97.7 5.1E-05 1.7E-09 64.4 6.2 32 76-107 2-36 (197)
158 1e6c_A Shikimate kinase; phosp 97.7 2E-05 6.9E-10 65.7 3.7 42 75-118 3-44 (173)
159 1rz3_A Hypothetical protein rb 97.7 6.9E-05 2.4E-09 65.4 6.8 53 52-110 6-61 (201)
160 2plr_A DTMP kinase, probable t 97.7 8.3E-05 2.8E-09 63.5 7.1 28 74-101 4-31 (213)
161 3fb4_A Adenylate kinase; psych 97.7 2.8E-05 9.4E-10 67.6 4.0 35 76-112 2-36 (216)
162 1ak2_A Adenylate kinase isoenz 97.7 3.1E-05 1.1E-09 68.9 4.4 39 72-112 14-52 (233)
163 1zak_A Adenylate kinase; ATP:A 97.6 1.7E-05 5.8E-10 69.7 2.6 39 72-112 3-41 (222)
164 1cke_A CK, MSSA, protein (cyti 97.6 3.4E-05 1.2E-09 67.2 4.5 37 74-112 5-41 (227)
165 3crm_A TRNA delta(2)-isopenten 97.6 0.00016 5.4E-09 69.9 9.5 39 73-111 4-42 (323)
166 2z43_A DNA repair and recombin 97.6 0.00011 3.7E-09 69.3 8.2 81 70-151 103-216 (324)
167 3dl0_A Adenylate kinase; phosp 97.6 2.8E-05 9.7E-10 67.7 3.9 35 76-112 2-36 (216)
168 3f8t_A Predicted ATPase involv 97.6 8E-06 2.7E-10 83.4 0.3 120 76-229 241-386 (506)
169 1u94_A RECA protein, recombina 97.6 8.8E-05 3E-09 72.0 7.5 80 70-153 59-156 (356)
170 2bbw_A Adenylate kinase 4, AK4 97.6 4.1E-05 1.4E-09 68.6 4.8 37 73-111 26-62 (246)
171 1uf9_A TT1252 protein; P-loop, 97.6 1.8E-05 6.2E-10 67.5 2.2 39 72-113 6-44 (203)
172 3be4_A Adenylate kinase; malar 97.6 3E-05 1E-09 68.3 3.5 37 74-112 5-41 (217)
173 2v54_A DTMP kinase, thymidylat 97.6 5E-05 1.7E-09 64.9 4.6 34 73-106 3-37 (204)
174 2pbr_A DTMP kinase, thymidylat 97.6 6.3E-05 2.2E-09 63.3 4.9 31 76-106 2-35 (195)
175 1m7g_A Adenylylsulfate kinase; 97.6 0.00019 6.6E-09 62.7 8.2 41 71-111 22-66 (211)
176 1v5w_A DMC1, meiotic recombina 97.6 0.00021 7.1E-09 68.2 9.0 80 70-151 118-232 (343)
177 1knq_A Gluconate kinase; ALFA/ 97.6 6.8E-05 2.3E-09 63.0 5.0 36 74-111 8-43 (175)
178 1nks_A Adenylate kinase; therm 97.6 3.7E-05 1.3E-09 64.6 3.3 37 75-111 2-41 (194)
179 2i1q_A DNA repair and recombin 97.5 0.00014 4.9E-09 67.8 7.5 28 70-97 94-121 (322)
180 2yvu_A Probable adenylyl-sulfa 97.5 0.00028 9.4E-09 60.1 8.7 40 72-111 11-53 (186)
181 2if2_A Dephospho-COA kinase; a 97.5 7.5E-05 2.6E-09 64.3 5.1 49 75-126 2-50 (204)
182 1nn5_A Similar to deoxythymidy 97.5 3.8E-05 1.3E-09 66.0 3.1 30 72-101 7-36 (215)
183 1g41_A Heat shock protein HSLU 97.5 0.00021 7.1E-09 71.8 8.8 105 117-234 236-346 (444)
184 3tau_A Guanylate kinase, GMP k 97.5 0.00013 4.4E-09 64.1 6.3 28 72-99 6-33 (208)
185 2zts_A Putative uncharacterize 97.5 0.00038 1.3E-08 60.7 9.1 37 71-107 27-67 (251)
186 2qt1_A Nicotinamide riboside k 97.5 5.1E-05 1.7E-09 65.8 3.5 41 69-111 16-57 (207)
187 2r6a_A DNAB helicase, replicat 97.5 0.00035 1.2E-08 68.9 9.8 38 70-107 199-240 (454)
188 3io5_A Recombination and repai 97.5 0.00026 8.8E-09 69.0 8.7 77 76-153 30-126 (333)
189 3zvl_A Bifunctional polynucleo 97.5 9.7E-05 3.3E-09 72.4 5.7 37 72-110 256-292 (416)
190 1e4v_A Adenylate kinase; trans 97.5 5.7E-05 1.9E-09 66.1 3.5 35 76-112 2-36 (214)
191 3ake_A Cytidylate kinase; CMP 97.5 8.6E-05 2.9E-09 63.5 4.6 34 76-111 4-37 (208)
192 3vkg_A Dynein heavy chain, cyt 97.5 0.00029 1E-08 84.6 10.3 172 75-270 605-794 (3245)
193 2wwf_A Thymidilate kinase, put 97.4 3.9E-05 1.3E-09 66.0 2.1 32 72-103 8-39 (212)
194 2ga8_A Hypothetical 39.9 kDa p 97.4 7E-05 2.4E-09 73.5 4.1 71 54-128 5-93 (359)
195 2jaq_A Deoxyguanosine kinase; 97.4 9.3E-05 3.2E-09 62.8 4.3 29 76-104 2-30 (205)
196 2b8t_A Thymidine kinase; deoxy 97.4 0.00018 6E-09 65.8 6.3 73 75-149 13-100 (223)
197 1jr3_D DNA polymerase III, del 97.4 0.00087 3E-08 62.7 11.2 147 72-254 16-174 (343)
198 1vht_A Dephospho-COA kinase; s 97.4 0.00011 3.9E-09 64.1 4.8 37 73-112 3-39 (218)
199 4gp7_A Metallophosphoesterase; 97.4 0.00013 4.5E-09 62.2 5.0 22 72-93 7-28 (171)
200 1nlf_A Regulatory protein REPA 97.4 0.00014 4.7E-09 66.5 5.4 25 74-98 30-54 (279)
201 3c8u_A Fructokinase; YP_612366 97.4 7E-05 2.4E-09 65.5 3.3 28 72-99 20-47 (208)
202 2h92_A Cytidylate kinase; ross 97.4 8.6E-05 2.9E-09 64.6 3.7 36 74-111 3-38 (219)
203 2xb4_A Adenylate kinase; ATP-b 97.4 0.00012 4E-09 65.0 4.5 36 76-113 2-37 (223)
204 3r20_A Cytidylate kinase; stru 97.4 0.00011 3.7E-09 67.7 4.4 39 72-112 7-45 (233)
205 3jvv_A Twitching mobility prot 97.4 0.00035 1.2E-08 67.7 8.1 78 60-147 114-205 (356)
206 1ltq_A Polynucleotide kinase; 97.4 0.00033 1.1E-08 63.9 7.4 35 74-110 2-37 (301)
207 2f6r_A COA synthase, bifunctio 97.4 0.00012 4E-09 68.0 4.2 37 72-111 73-109 (281)
208 1z6t_A APAF-1, apoptotic prote 97.3 0.0004 1.4E-08 69.2 8.2 24 73-96 146-169 (591)
209 2grj_A Dephospho-COA kinase; T 97.3 0.00011 3.6E-09 65.2 3.5 39 73-113 11-49 (192)
210 2i3b_A HCR-ntpase, human cance 97.3 0.00012 4.1E-09 64.7 3.7 23 76-98 3-25 (189)
211 1q3t_A Cytidylate kinase; nucl 97.3 0.00017 5.7E-09 64.3 4.7 39 71-111 13-51 (236)
212 2q6t_A DNAB replication FORK h 97.3 0.00077 2.6E-08 66.2 9.6 38 70-107 196-237 (444)
213 3a8t_A Adenylate isopentenyltr 97.3 0.00053 1.8E-08 66.8 8.2 36 73-108 39-74 (339)
214 3tqc_A Pantothenate kinase; bi 97.3 0.00039 1.3E-08 66.8 7.2 29 71-99 89-117 (321)
215 2eyu_A Twitching motility prot 97.3 0.00017 5.9E-09 66.7 4.4 72 71-147 22-107 (261)
216 1vma_A Cell division protein F 97.3 0.0008 2.7E-08 63.9 9.1 70 72-147 102-195 (306)
217 3asz_A Uridine kinase; cytidin 97.2 0.00017 5.8E-09 62.4 3.7 33 72-104 4-38 (211)
218 3gmt_A Adenylate kinase; ssgci 97.2 0.00016 5.3E-09 66.8 3.4 38 74-113 8-45 (230)
219 2axn_A 6-phosphofructo-2-kinas 97.2 0.00063 2.1E-08 69.0 8.1 42 72-113 33-77 (520)
220 2orw_A Thymidine kinase; TMTK, 97.2 0.00014 4.8E-09 63.6 2.8 31 75-105 4-37 (184)
221 4e22_A Cytidylate kinase; P-lo 97.2 0.00026 9E-09 64.2 4.8 36 74-111 27-62 (252)
222 2j41_A Guanylate kinase; GMP, 97.2 0.0002 6.8E-09 61.1 3.5 28 71-98 3-30 (207)
223 3ney_A 55 kDa erythrocyte memb 97.2 0.00038 1.3E-08 62.6 5.3 27 73-99 18-44 (197)
224 3kl4_A SRP54, signal recogniti 97.2 0.0018 6.3E-08 64.6 10.6 35 73-107 96-133 (433)
225 3foz_A TRNA delta(2)-isopenten 97.1 0.00037 1.3E-08 67.3 5.1 41 72-112 8-48 (316)
226 1odf_A YGR205W, hypothetical 3 97.1 0.00076 2.6E-08 63.4 7.0 42 70-111 27-74 (290)
227 3nwj_A ATSK2; P loop, shikimat 97.1 0.00034 1.1E-08 64.6 4.5 43 74-118 48-91 (250)
228 3tr0_A Guanylate kinase, GMP k 97.1 0.0005 1.7E-08 58.7 5.1 38 72-111 5-42 (205)
229 3dm5_A SRP54, signal recogniti 97.1 0.0031 1.1E-07 63.3 11.3 70 73-147 99-191 (443)
230 1sq5_A Pantothenate kinase; P- 97.1 0.00052 1.8E-08 64.3 5.3 29 71-99 77-105 (308)
231 3bh0_A DNAB-like replicative h 97.1 0.0037 1.3E-07 58.7 11.1 37 70-106 64-103 (315)
232 2fz4_A DNA repair protein RAD2 97.0 0.0016 5.3E-08 58.7 8.0 35 77-111 111-146 (237)
233 1a7j_A Phosphoribulokinase; tr 97.0 0.00036 1.2E-08 65.3 3.4 40 73-112 4-46 (290)
234 2qor_A Guanylate kinase; phosp 97.0 0.00041 1.4E-08 60.3 3.5 28 72-99 10-37 (204)
235 2bdt_A BH3686; alpha-beta prot 96.9 0.00068 2.3E-08 57.7 4.5 35 75-110 3-37 (189)
236 1q57_A DNA primase/helicase; d 96.9 0.0019 6.5E-08 64.1 8.4 34 74-107 242-279 (503)
237 3d3q_A TRNA delta(2)-isopenten 96.9 0.00064 2.2E-08 66.1 4.8 35 74-108 7-41 (340)
238 2ewv_A Twitching motility prot 96.9 0.001 3.5E-08 64.4 6.2 72 71-147 133-218 (372)
239 1g5t_A COB(I)alamin adenosyltr 96.9 0.0017 6E-08 58.6 7.3 72 76-149 30-131 (196)
240 1sky_E F1-ATPase, F1-ATP synth 96.9 0.0015 5.1E-08 66.3 7.4 68 76-149 153-256 (473)
241 2jeo_A Uridine-cytidine kinase 96.9 0.00064 2.2E-08 60.9 4.3 32 70-101 21-52 (245)
242 3a00_A Guanylate kinase, GMP k 96.9 0.00046 1.6E-08 59.3 3.2 26 74-99 1-26 (186)
243 3fdi_A Uncharacterized protein 96.9 0.00067 2.3E-08 60.0 4.2 37 75-114 7-43 (201)
244 1kgd_A CASK, peripheral plasma 96.9 0.00072 2.5E-08 57.9 4.0 26 74-99 5-30 (180)
245 3exa_A TRNA delta(2)-isopenten 96.8 0.00079 2.7E-08 65.3 4.6 39 74-112 3-41 (322)
246 4a1f_A DNAB helicase, replicat 96.8 0.002 6.9E-08 62.3 7.4 38 70-107 42-82 (338)
247 4eaq_A DTMP kinase, thymidylat 96.8 0.0016 5.5E-08 58.6 6.1 34 72-105 24-59 (229)
248 1x6v_B Bifunctional 3'-phospho 96.8 0.0023 7.7E-08 66.9 7.7 38 73-110 51-91 (630)
249 3lnc_A Guanylate kinase, GMP k 96.8 0.00039 1.3E-08 61.4 1.7 28 71-98 24-52 (231)
250 3bgw_A DNAB-like replicative h 96.8 0.0047 1.6E-07 61.3 9.7 38 70-107 193-233 (444)
251 3hdt_A Putative kinase; struct 96.7 0.001 3.5E-08 60.4 4.3 37 74-113 14-50 (223)
252 3eph_A TRNA isopentenyltransfe 96.7 0.0011 3.8E-08 66.1 4.7 39 73-111 1-39 (409)
253 1j8m_F SRP54, signal recogniti 96.7 0.0089 3E-07 56.3 10.7 34 74-107 98-134 (297)
254 2pt7_A CAG-ALFA; ATPase, prote 96.7 0.0014 4.9E-08 62.4 4.9 69 75-149 172-251 (330)
255 2px0_A Flagellar biosynthesis 96.6 0.006 2E-07 57.3 9.0 36 72-107 103-142 (296)
256 2r8r_A Sensor protein; KDPD, P 96.6 0.0016 5.5E-08 60.2 4.7 35 73-107 5-42 (228)
257 2a5y_B CED-4; apoptosis; HET: 96.6 0.011 3.7E-07 59.3 11.2 25 72-96 150-174 (549)
258 1tf7_A KAIC; homohexamer, hexa 96.5 0.0076 2.6E-07 60.4 9.4 39 71-109 36-78 (525)
259 4aby_A DNA repair protein RECN 96.5 0.008 2.7E-07 57.3 9.1 28 71-99 58-85 (415)
260 1ex7_A Guanylate kinase; subst 96.5 0.0025 8.6E-08 56.5 5.2 24 77-100 4-27 (186)
261 2j37_W Signal recognition part 96.5 0.011 3.9E-07 59.9 10.6 36 72-107 99-137 (504)
262 1znw_A Guanylate kinase, GMP k 96.5 0.0017 5.8E-08 56.6 3.8 29 71-99 17-45 (207)
263 1gtv_A TMK, thymidylate kinase 96.5 0.00067 2.3E-08 58.3 1.2 25 76-100 2-26 (214)
264 3ice_A Transcription terminati 96.5 0.0082 2.8E-07 60.1 9.1 74 75-149 175-272 (422)
265 3aez_A Pantothenate kinase; tr 96.5 0.002 6.9E-08 61.1 4.4 29 71-99 87-115 (312)
266 2gks_A Bifunctional SAT/APS ki 96.4 0.0028 9.5E-08 64.7 5.6 39 72-110 370-411 (546)
267 1m8p_A Sulfate adenylyltransfe 96.4 0.0053 1.8E-07 63.1 7.6 42 72-113 394-439 (573)
268 3sfz_A APAF-1, apoptotic pepti 96.4 0.0048 1.6E-07 65.4 7.5 26 72-97 145-170 (1249)
269 2ocp_A DGK, deoxyguanosine kin 96.4 0.0023 7.8E-08 57.0 4.3 29 74-102 2-31 (241)
270 1z6g_A Guanylate kinase; struc 96.4 0.0018 6.1E-08 57.5 3.4 28 71-98 20-47 (218)
271 1lvg_A Guanylate kinase, GMP k 96.4 0.0018 6.2E-08 56.5 3.2 27 73-99 3-29 (198)
272 3e1s_A Exodeoxyribonuclease V, 96.3 0.0022 7.5E-08 65.8 4.1 32 75-106 205-239 (574)
273 1p5z_B DCK, deoxycytidine kina 96.3 0.0012 3.9E-08 59.8 1.6 32 72-103 22-54 (263)
274 1htw_A HI0065; nucleotide-bind 96.3 0.009 3.1E-07 51.2 7.1 28 71-98 30-57 (158)
275 2iut_A DNA translocase FTSK; n 96.2 0.0077 2.6E-07 62.4 7.6 33 76-108 216-255 (574)
276 3thx_B DNA mismatch repair pro 96.2 0.012 4E-07 64.0 9.3 21 75-95 674-694 (918)
277 4edh_A DTMP kinase, thymidylat 96.2 0.0062 2.1E-07 54.6 6.1 34 73-106 5-41 (213)
278 1vt4_I APAF-1 related killer D 96.2 0.011 3.7E-07 65.8 8.8 26 72-97 148-173 (1221)
279 3v9p_A DTMP kinase, thymidylat 96.2 0.0071 2.4E-07 55.1 6.2 34 73-106 24-64 (227)
280 1bif_A 6-phosphofructo-2-kinas 96.2 0.01 3.4E-07 58.7 7.7 36 72-107 37-75 (469)
281 3p32_A Probable GTPase RV1496/ 96.1 0.031 1.1E-06 53.2 10.8 35 72-106 77-114 (355)
282 1w36_D RECD, exodeoxyribonucle 96.1 0.0046 1.6E-07 63.5 5.0 24 75-98 165-188 (608)
283 3tmk_A Thymidylate kinase; pho 96.1 0.0094 3.2E-07 53.9 6.5 31 73-103 4-34 (216)
284 2xxa_A Signal recognition part 96.0 0.037 1.3E-06 54.9 11.1 37 72-108 98-138 (433)
285 1zu4_A FTSY; GTPase, signal re 96.0 0.012 4E-07 56.1 7.2 35 72-106 103-140 (320)
286 1ls1_A Signal recognition part 96.0 0.021 7.1E-07 53.5 8.5 34 73-106 97-133 (295)
287 3kw6_A 26S protease regulatory 95.9 0.012 4E-07 44.5 5.4 54 223-280 2-56 (78)
288 2qmh_A HPR kinase/phosphorylas 95.9 0.0043 1.5E-07 56.7 3.4 38 74-112 34-71 (205)
289 4i1u_A Dephospho-COA kinase; s 95.9 0.0066 2.3E-07 55.1 4.6 50 74-126 9-61 (210)
290 2oap_1 GSPE-2, type II secreti 95.9 0.0036 1.2E-07 63.5 3.0 72 72-148 258-343 (511)
291 3b9q_A Chloroplast SRP recepto 95.9 0.0094 3.2E-07 56.2 5.7 41 71-111 97-139 (302)
292 3e70_C DPA, signal recognition 95.8 0.013 4.6E-07 56.0 6.7 40 72-111 127-168 (328)
293 2ius_A DNA translocase FTSK; n 95.8 0.03 1E-06 57.1 9.4 33 76-108 169-208 (512)
294 3thx_A DNA mismatch repair pro 95.8 0.022 7.4E-07 62.0 8.8 75 75-151 663-754 (934)
295 3szr_A Interferon-induced GTP- 95.8 0.026 9E-07 58.0 9.0 27 71-98 43-69 (608)
296 3ld9_A DTMP kinase, thymidylat 95.8 0.0063 2.2E-07 55.4 3.9 33 72-104 19-55 (223)
297 4f4c_A Multidrug resistance pr 95.7 0.04 1.4E-06 61.6 11.0 26 75-100 445-470 (1321)
298 1wb9_A DNA mismatch repair pro 95.7 0.039 1.3E-06 59.0 10.4 23 75-97 608-630 (800)
299 3kta_A Chromosome segregation 95.7 0.007 2.4E-07 50.9 3.7 26 75-100 27-52 (182)
300 2v9p_A Replication protein E1; 95.7 0.007 2.4E-07 57.7 4.0 29 70-98 122-150 (305)
301 1p9r_A General secretion pathw 95.7 0.014 4.8E-07 57.7 6.3 26 75-100 168-193 (418)
302 1s96_A Guanylate kinase, GMP k 95.6 0.0074 2.5E-07 54.2 3.9 28 72-99 14-41 (219)
303 2og2_A Putative signal recogni 95.6 0.021 7.2E-07 55.5 7.3 41 71-111 154-196 (359)
304 4f4c_A Multidrug resistance pr 95.6 0.014 4.9E-07 65.1 6.8 24 76-99 1107-1130(1321)
305 1rj9_A FTSY, signal recognitio 95.6 0.0091 3.1E-07 56.5 4.3 39 73-111 101-141 (304)
306 3b85_A Phosphate starvation-in 95.5 0.0067 2.3E-07 54.2 3.0 23 75-97 23-45 (208)
307 2c9o_A RUVB-like 1; hexameric 95.5 0.059 2E-06 52.9 10.0 84 139-251 296-395 (456)
308 2krk_A 26S protease regulatory 95.5 0.007 2.4E-07 47.3 2.8 55 223-281 10-65 (86)
309 2yhs_A FTSY, cell division pro 95.5 0.039 1.3E-06 56.3 8.9 41 71-111 290-332 (503)
310 3upu_A ATP-dependent DNA helic 95.5 0.018 6.2E-07 56.5 6.2 23 76-98 47-69 (459)
311 2v3c_C SRP54, signal recogniti 95.4 0.013 4.4E-07 58.2 5.0 35 73-107 98-135 (432)
312 4b3f_X DNA-binding protein smu 95.4 0.008 2.7E-07 61.7 3.6 32 76-107 207-241 (646)
313 2pcj_A ABC transporter, lipopr 95.4 0.0058 2E-07 54.9 2.2 27 73-99 29-55 (224)
314 2onk_A Molybdate/tungstate ABC 95.4 0.0073 2.5E-07 55.1 2.8 28 71-99 22-49 (240)
315 1np6_A Molybdopterin-guanine d 95.3 0.011 3.9E-07 51.5 3.9 27 72-98 4-30 (174)
316 1dek_A Deoxynucleoside monopho 95.3 0.0062 2.1E-07 56.2 2.2 28 75-102 2-29 (241)
317 3ch4_B Pmkase, phosphomevalona 95.3 0.0094 3.2E-07 54.1 3.3 40 72-111 9-49 (202)
318 3cr8_A Sulfate adenylyltranfer 95.3 0.015 5.1E-07 59.6 5.2 40 71-110 366-409 (552)
319 3j16_B RLI1P; ribosome recycli 95.2 0.027 9.2E-07 58.3 6.9 101 76-203 105-280 (608)
320 3tif_A Uncharacterized ABC tra 95.2 0.0074 2.5E-07 54.6 2.4 28 72-99 29-56 (235)
321 1g8f_A Sulfate adenylyltransfe 95.2 0.0086 2.9E-07 61.0 3.0 29 72-100 393-421 (511)
322 1c9k_A COBU, adenosylcobinamid 95.2 0.011 3.7E-07 52.6 3.3 34 77-111 2-35 (180)
323 2cbz_A Multidrug resistance-as 95.2 0.0077 2.6E-07 54.6 2.4 27 72-98 29-55 (237)
324 2gza_A Type IV secretion syste 95.2 0.018 6.3E-07 55.2 5.1 71 74-149 175-263 (361)
325 1b0u_A Histidine permease; ABC 95.2 0.008 2.7E-07 55.4 2.4 29 71-99 29-57 (262)
326 1g6h_A High-affinity branched- 95.2 0.0079 2.7E-07 55.1 2.4 25 75-99 34-58 (257)
327 3fvq_A Fe(3+) IONS import ATP- 95.2 0.0083 2.8E-07 58.5 2.7 24 75-98 31-54 (359)
328 1w4r_A Thymidine kinase; type 95.2 0.017 5.8E-07 52.1 4.5 35 73-107 19-56 (195)
329 2d2e_A SUFC protein; ABC-ATPas 95.1 0.01 3.5E-07 54.1 2.9 25 73-97 28-52 (250)
330 2it1_A 362AA long hypothetical 95.1 0.01 3.4E-07 57.9 2.9 27 73-99 28-54 (362)
331 1ji0_A ABC transporter; ATP bi 95.1 0.0088 3E-07 54.2 2.4 27 73-99 31-57 (240)
332 2vp4_A Deoxynucleoside kinase; 95.0 0.014 4.9E-07 51.7 3.7 27 71-97 17-43 (230)
333 2zu0_C Probable ATP-dependent 95.0 0.011 3.7E-07 54.6 2.9 27 71-97 43-69 (267)
334 3rlf_A Maltose/maltodextrin im 95.0 0.01 3.5E-07 58.4 2.9 26 74-99 29-54 (381)
335 1g29_1 MALK, maltose transport 95.0 0.01 3.5E-07 57.9 2.9 26 74-99 29-54 (372)
336 2yyz_A Sugar ABC transporter, 95.0 0.01 3.5E-07 57.7 2.9 27 72-98 27-53 (359)
337 2o8b_B DNA mismatch repair pro 95.0 0.075 2.6E-06 58.3 9.9 21 75-95 790-810 (1022)
338 1xjc_A MOBB protein homolog; s 95.0 0.016 5.4E-07 50.9 3.8 33 74-106 4-39 (169)
339 3k53_A Ferrous iron transport 95.0 0.075 2.6E-06 48.1 8.4 23 75-97 4-26 (271)
340 1z47_A CYSA, putative ABC-tran 95.0 0.011 3.6E-07 57.6 2.9 25 75-99 42-66 (355)
341 1lw7_A Transcriptional regulat 95.0 0.012 4.1E-07 56.0 3.2 27 75-101 171-197 (365)
342 1v43_A Sugar-binding transport 95.0 0.011 3.7E-07 57.8 2.9 27 72-98 35-61 (372)
343 3lv8_A DTMP kinase, thymidylat 95.0 0.014 4.8E-07 53.4 3.5 27 73-99 26-52 (236)
344 3lxw_A GTPase IMAP family memb 94.9 0.038 1.3E-06 49.7 6.2 25 73-97 20-44 (247)
345 2obl_A ESCN; ATPase, hydrolase 94.9 0.034 1.2E-06 53.5 6.2 29 74-102 71-99 (347)
346 3vkw_A Replicase large subunit 94.9 0.011 3.7E-07 59.5 2.8 23 74-96 161-183 (446)
347 2pze_A Cystic fibrosis transme 94.9 0.011 3.7E-07 53.3 2.4 26 74-99 34-59 (229)
348 3gfo_A Cobalt import ATP-bindi 94.9 0.011 3.7E-07 55.2 2.4 25 74-98 34-58 (275)
349 2olj_A Amino acid ABC transpor 94.8 0.011 3.7E-07 54.8 2.4 29 71-99 47-75 (263)
350 4g1u_C Hemin import ATP-bindin 94.8 0.012 4.3E-07 54.3 2.8 27 73-99 36-62 (266)
351 3d31_A Sulfate/molybdate ABC t 94.8 0.009 3.1E-07 57.8 1.8 26 73-98 25-50 (348)
352 3t34_A Dynamin-related protein 94.8 0.15 5.1E-06 48.2 10.2 26 71-97 32-57 (360)
353 1sgw_A Putative ABC transporte 94.8 0.01 3.5E-07 53.4 2.0 26 74-99 35-60 (214)
354 2ff7_A Alpha-hemolysin translo 94.8 0.011 3.9E-07 53.8 2.4 28 72-99 33-60 (247)
355 4hlc_A DTMP kinase, thymidylat 94.8 0.041 1.4E-06 48.9 5.9 31 76-106 4-36 (205)
356 2yz2_A Putative ABC transporte 94.7 0.012 4.1E-07 54.2 2.4 27 72-98 31-57 (266)
357 1mv5_A LMRA, multidrug resista 94.7 0.013 4.5E-07 53.0 2.6 28 71-98 25-52 (243)
358 2ihy_A ABC transporter, ATP-bi 94.7 0.012 4.2E-07 54.8 2.4 27 73-99 46-72 (279)
359 1vpl_A ABC transporter, ATP-bi 94.7 0.013 4.3E-07 54.1 2.4 28 72-99 39-66 (256)
360 2qi9_C Vitamin B12 import ATP- 94.7 0.013 4.4E-07 53.8 2.4 26 74-99 26-51 (249)
361 2qm8_A GTPase/ATPase; G protei 94.7 0.023 8E-07 54.1 4.3 28 71-98 52-79 (337)
362 2ixe_A Antigen peptide transpo 94.6 0.013 4.4E-07 54.3 2.4 29 71-99 42-70 (271)
363 1moz_A ARL1, ADP-ribosylation 94.6 0.027 9.2E-07 46.3 4.1 35 61-95 5-39 (183)
364 2nq2_C Hypothetical ABC transp 94.6 0.013 4.6E-07 53.7 2.4 27 72-98 29-55 (253)
365 2f9l_A RAB11B, member RAS onco 94.6 0.019 6.7E-07 48.7 3.2 24 74-97 5-28 (199)
366 1oxx_K GLCV, glucose, ABC tran 94.6 0.0086 3E-07 58.0 1.1 26 73-98 30-55 (353)
367 3gd7_A Fusion complex of cysti 94.5 0.015 5.1E-07 57.2 2.7 26 72-97 45-70 (390)
368 2gk6_A Regulator of nonsense t 94.5 0.02 6.9E-07 58.7 3.6 23 76-98 197-219 (624)
369 3def_A T7I23.11 protein; chlor 94.5 0.29 9.9E-06 44.0 10.9 26 73-98 35-60 (262)
370 2ghi_A Transport protein; mult 94.5 0.015 5.2E-07 53.4 2.4 28 71-98 43-70 (260)
371 2r9v_A ATP synthase subunit al 94.5 0.066 2.2E-06 54.9 7.3 29 77-105 178-207 (515)
372 1oix_A RAS-related protein RAB 94.5 0.02 6.9E-07 48.6 3.0 24 75-98 30-53 (191)
373 2qe7_A ATP synthase subunit al 94.4 0.075 2.6E-06 54.3 7.6 29 77-105 165-194 (502)
374 1m2o_B GTP-binding protein SAR 94.4 0.13 4.4E-06 43.4 8.0 23 74-96 23-45 (190)
375 2xau_A PRE-mRNA-splicing facto 94.4 0.052 1.8E-06 57.4 6.6 23 75-97 110-132 (773)
376 1ewq_A DNA mismatch repair pro 94.4 0.1 3.6E-06 55.5 8.8 74 76-151 578-668 (765)
377 2f1r_A Molybdopterin-guanine d 94.3 0.013 4.4E-07 50.9 1.5 37 75-111 3-44 (171)
378 4tmk_A Protein (thymidylate ki 94.3 0.026 8.8E-07 50.7 3.5 25 74-98 3-27 (213)
379 2pjz_A Hypothetical protein ST 94.3 0.018 6E-07 53.4 2.4 25 74-98 30-54 (263)
380 3l0o_A Transcription terminati 94.3 0.15 5.2E-06 51.1 9.2 73 76-149 177-273 (427)
381 2dpy_A FLII, flagellum-specifi 94.2 0.035 1.2E-06 55.2 4.6 32 71-102 154-185 (438)
382 3sop_A Neuronal-specific septi 94.2 0.023 7.8E-07 52.6 3.1 23 76-98 4-26 (270)
383 3vlf_B 26S protease regulatory 94.2 0.063 2.2E-06 41.7 5.2 53 225-281 2-55 (88)
384 2xtp_A GTPase IMAP family memb 94.2 0.15 5.2E-06 45.3 8.3 26 73-98 21-46 (260)
385 1z2a_A RAS-related protein RAB 94.2 0.032 1.1E-06 44.8 3.5 25 73-97 4-28 (168)
386 2wsm_A Hydrogenase expression/ 94.1 0.067 2.3E-06 45.9 5.6 27 73-99 29-55 (221)
387 2ffh_A Protein (FFH); SRP54, s 94.1 0.11 3.7E-06 51.7 7.8 34 73-106 97-133 (425)
388 3tui_C Methionine import ATP-b 94.0 0.024 8.3E-07 55.5 2.9 26 73-98 53-78 (366)
389 1fx0_A ATP synthase alpha chai 94.0 0.071 2.4E-06 54.5 6.4 29 77-105 166-195 (507)
390 2npi_A Protein CLP1; CLP1-PCF1 94.0 0.039 1.3E-06 55.2 4.4 28 71-98 135-162 (460)
391 1pui_A ENGB, probable GTP-bind 93.9 0.018 6E-07 48.9 1.6 28 71-98 23-50 (210)
392 1tf7_A KAIC; homohexamer, hexa 93.9 0.029 1E-06 56.1 3.4 36 72-107 279-317 (525)
393 2bbs_A Cystic fibrosis transme 93.9 0.021 7.1E-07 53.7 2.1 25 74-98 64-88 (290)
394 1yrb_A ATP(GTP)binding protein 93.9 0.072 2.5E-06 47.0 5.5 35 72-106 12-48 (262)
395 3hjn_A DTMP kinase, thymidylat 93.9 0.063 2.2E-06 47.2 5.1 32 77-108 3-37 (197)
396 2c61_A A-type ATP synthase non 93.9 0.08 2.7E-06 53.6 6.4 24 77-100 155-178 (469)
397 3tqf_A HPR(Ser) kinase; transf 93.8 0.045 1.5E-06 49.2 4.0 29 75-104 17-45 (181)
398 2hf9_A Probable hydrogenase ni 93.8 0.097 3.3E-06 45.0 6.1 26 73-98 37-62 (226)
399 2ged_A SR-beta, signal recogni 93.8 0.046 1.6E-06 45.5 3.9 27 72-98 46-72 (193)
400 1ky3_A GTP-binding protein YPT 93.8 0.041 1.4E-06 44.7 3.5 26 72-97 6-31 (182)
401 2dyk_A GTP-binding protein; GT 93.8 0.038 1.3E-06 44.1 3.2 23 76-98 3-25 (161)
402 2ce2_X GTPase HRAS; signaling 93.8 0.035 1.2E-06 44.0 3.0 24 75-98 4-27 (166)
403 1f2t_A RAD50 ABC-ATPase; DNA d 93.8 0.042 1.5E-06 46.1 3.6 25 74-98 23-47 (149)
404 1nrj_B SR-beta, signal recogni 93.8 0.046 1.6E-06 46.7 3.8 26 73-98 11-36 (218)
405 1u8z_A RAS-related protein RAL 93.8 0.043 1.5E-06 43.8 3.5 24 74-97 4-27 (168)
406 1kao_A RAP2A; GTP-binding prot 93.7 0.044 1.5E-06 43.6 3.5 25 74-98 3-27 (167)
407 3oaa_A ATP synthase subunit al 93.6 0.11 3.7E-06 53.3 6.9 29 77-105 165-194 (513)
408 4dcu_A GTP-binding protein ENG 93.6 0.23 7.9E-06 48.7 9.1 22 75-96 24-45 (456)
409 1upt_A ARL1, ADP-ribosylation 93.6 0.058 2E-06 43.5 4.0 26 72-97 5-30 (171)
410 3clv_A RAB5 protein, putative; 93.6 0.056 1.9E-06 44.4 4.0 26 72-97 5-30 (208)
411 2www_A Methylmalonic aciduria 93.6 0.088 3E-06 50.2 5.9 25 74-98 74-98 (349)
412 2nzj_A GTP-binding protein REM 93.6 0.048 1.6E-06 44.2 3.5 24 74-97 4-27 (175)
413 3a1s_A Iron(II) transport prot 93.5 0.15 5E-06 46.5 7.0 23 74-96 5-27 (258)
414 3iuy_A Probable ATP-dependent 93.5 0.052 1.8E-06 47.1 3.9 19 75-93 58-76 (228)
415 2zej_A Dardarin, leucine-rich 93.5 0.034 1.2E-06 46.6 2.6 21 76-96 4-24 (184)
416 2atv_A RERG, RAS-like estrogen 93.5 0.056 1.9E-06 45.5 3.9 26 72-97 26-51 (196)
417 1z0j_A RAB-22, RAS-related pro 93.5 0.047 1.6E-06 43.9 3.2 25 74-98 6-30 (170)
418 1ek0_A Protein (GTP-binding pr 93.5 0.042 1.5E-06 44.0 2.9 24 75-98 4-27 (170)
419 2wji_A Ferrous iron transport 93.4 0.043 1.5E-06 45.1 3.0 23 75-97 4-26 (165)
420 1qhl_A Protein (cell division 93.4 0.012 4.2E-07 53.6 -0.4 25 76-100 29-53 (227)
421 2wjg_A FEOB, ferrous iron tran 93.4 0.049 1.7E-06 45.1 3.3 23 75-97 8-30 (188)
422 1wms_A RAB-9, RAB9, RAS-relate 93.4 0.049 1.7E-06 44.3 3.2 24 74-97 7-30 (177)
423 2p67_A LAO/AO transport system 93.3 0.086 2.9E-06 49.9 5.3 28 71-98 53-80 (341)
424 1z08_A RAS-related protein RAB 93.3 0.05 1.7E-06 43.8 3.2 25 73-97 5-29 (170)
425 1ksh_A ARF-like protein 2; sma 93.2 0.057 1.9E-06 44.7 3.5 27 72-98 16-42 (186)
426 1g16_A RAS-related protein SEC 93.2 0.054 1.8E-06 43.5 3.2 24 74-97 3-26 (170)
427 2ck3_A ATP synthase subunit al 93.2 0.14 4.7E-06 52.5 6.9 23 77-99 165-188 (510)
428 1r2q_A RAS-related protein RAB 93.2 0.053 1.8E-06 43.4 3.2 24 74-97 6-29 (170)
429 2hxs_A RAB-26, RAS-related pro 93.2 0.054 1.9E-06 44.1 3.2 25 73-97 5-29 (178)
430 2wjy_A Regulator of nonsense t 93.2 0.048 1.6E-06 58.2 3.6 23 76-98 373-395 (800)
431 2erx_A GTP-binding protein DI- 93.1 0.053 1.8E-06 43.5 3.1 22 75-96 4-25 (172)
432 2lkc_A Translation initiation 93.1 0.067 2.3E-06 43.5 3.7 24 73-96 7-30 (178)
433 3bc1_A RAS-related protein RAB 93.1 0.059 2E-06 44.2 3.4 26 72-97 9-34 (195)
434 1c1y_A RAS-related protein RAP 93.1 0.056 1.9E-06 43.3 3.2 23 75-97 4-26 (167)
435 3b1v_A Ferrous iron uptake tra 93.1 0.2 6.9E-06 46.2 7.3 23 75-97 4-26 (272)
436 1r8s_A ADP-ribosylation factor 93.1 0.061 2.1E-06 43.2 3.3 21 77-97 3-23 (164)
437 3aji_B S6C, proteasome (prosom 93.1 0.1 3.5E-06 39.6 4.4 51 225-279 2-53 (83)
438 1jwy_B Dynamin A GTPase domain 93.0 0.53 1.8E-05 42.7 9.9 23 76-98 26-48 (315)
439 2hjg_A GTP-binding protein ENG 93.0 0.29 9.9E-06 47.7 8.6 22 76-97 5-26 (436)
440 3euj_A Chromosome partition pr 93.0 0.061 2.1E-06 54.5 3.8 28 71-99 27-54 (483)
441 3q85_A GTP-binding protein REM 92.9 0.059 2E-06 43.5 3.0 20 76-95 4-23 (169)
442 2a9k_A RAS-related protein RAL 92.9 0.069 2.4E-06 43.6 3.5 25 74-98 18-42 (187)
443 2y8e_A RAB-protein 6, GH09086P 92.9 0.059 2E-06 43.7 3.0 23 75-97 15-37 (179)
444 2z0m_A 337AA long hypothetical 92.8 0.34 1.2E-05 43.3 8.3 34 75-108 32-65 (337)
445 1z0f_A RAB14, member RAS oncog 92.7 0.068 2.3E-06 43.3 3.2 25 74-98 15-39 (179)
446 3qks_A DNA double-strand break 92.7 0.072 2.5E-06 46.8 3.6 27 74-100 23-49 (203)
447 3tw8_B RAS-related protein RAB 92.7 0.06 2.1E-06 43.7 2.9 24 73-96 8-31 (181)
448 3nh6_A ATP-binding cassette SU 92.7 0.031 1.1E-06 53.1 1.3 28 72-99 78-105 (306)
449 1m7b_A RND3/RHOE small GTP-bin 92.7 0.069 2.3E-06 44.5 3.2 26 72-97 5-30 (184)
450 3q72_A GTP-binding protein RAD 92.7 0.056 1.9E-06 43.5 2.6 21 76-96 4-24 (166)
451 3t1o_A Gliding protein MGLA; G 92.6 0.066 2.3E-06 44.1 3.0 25 75-99 15-39 (198)
452 2gj8_A MNME, tRNA modification 92.6 0.073 2.5E-06 44.4 3.3 25 74-98 4-28 (172)
453 2fn4_A P23, RAS-related protei 92.6 0.068 2.3E-06 43.4 3.0 24 74-97 9-32 (181)
454 2efe_B Small GTP-binding prote 92.6 0.073 2.5E-06 43.4 3.2 24 74-97 12-35 (181)
455 3iby_A Ferrous iron transport 92.6 0.22 7.5E-06 45.3 6.7 22 76-97 3-24 (256)
456 4dsu_A GTPase KRAS, isoform 2B 92.6 0.071 2.4E-06 43.7 3.1 25 74-98 4-28 (189)
457 2oil_A CATX-8, RAS-related pro 92.5 0.073 2.5E-06 44.4 3.2 24 74-97 25-48 (193)
458 3con_A GTPase NRAS; structural 92.5 0.074 2.5E-06 44.1 3.2 24 75-98 22-45 (190)
459 1yqt_A RNAse L inhibitor; ATP- 92.5 0.057 2E-06 54.8 2.9 24 75-98 313-336 (538)
460 1zj6_A ADP-ribosylation factor 92.4 0.12 4.3E-06 42.8 4.5 26 72-97 14-39 (187)
461 2xzl_A ATP-dependent helicase 92.4 0.07 2.4E-06 56.8 3.6 21 76-96 377-397 (802)
462 3ozx_A RNAse L inhibitor; ATP 92.4 0.051 1.8E-06 55.3 2.4 24 75-98 295-318 (538)
463 2bme_A RAB4A, RAS-related prot 92.4 0.073 2.5E-06 43.8 3.0 24 74-97 10-33 (186)
464 1u0l_A Probable GTPase ENGC; p 92.4 0.057 2E-06 50.3 2.5 25 75-99 170-194 (301)
465 2g6b_A RAS-related protein RAB 92.4 0.076 2.6E-06 43.3 3.0 27 72-98 8-34 (180)
466 2yv5_A YJEQ protein; hydrolase 92.4 0.072 2.5E-06 49.8 3.2 23 75-98 166-188 (302)
467 3bwd_D RAC-like GTP-binding pr 92.3 0.098 3.4E-06 42.7 3.7 25 73-97 7-31 (182)
468 4gzl_A RAS-related C3 botulinu 92.3 0.086 2.9E-06 45.1 3.5 26 72-97 28-53 (204)
469 1mh1_A RAC1; GTP-binding, GTPa 92.3 0.081 2.8E-06 43.2 3.2 23 75-97 6-28 (186)
470 3qkt_A DNA double-strand break 92.3 0.081 2.8E-06 49.9 3.6 31 210-242 136-166 (339)
471 3tkl_A RAS-related protein RAB 92.3 0.087 3E-06 43.7 3.4 26 73-98 15-40 (196)
472 4gl2_A Interferon-induced heli 92.3 0.065 2.2E-06 54.3 3.1 24 75-98 23-46 (699)
473 1yqt_A RNAse L inhibitor; ATP- 92.3 0.063 2.2E-06 54.4 2.9 26 73-98 46-71 (538)
474 3b6e_A Interferon-induced heli 92.2 0.076 2.6E-06 44.9 3.0 24 75-98 49-72 (216)
475 2qag_B Septin-6, protein NEDD5 92.2 0.068 2.3E-06 53.4 2.9 27 71-97 37-65 (427)
476 1tq4_A IIGP1, interferon-induc 92.1 0.07 2.4E-06 52.8 3.0 24 73-96 68-91 (413)
477 2gf9_A RAS-related protein RAB 92.1 0.089 3E-06 43.8 3.2 24 75-98 23-46 (189)
478 3kkq_A RAS-related protein M-R 92.1 0.11 3.7E-06 42.7 3.6 23 75-97 19-41 (183)
479 2rcn_A Probable GTPase ENGC; Y 92.0 0.082 2.8E-06 51.5 3.3 25 75-99 216-240 (358)
480 1svi_A GTP-binding protein YSX 92.0 0.093 3.2E-06 43.6 3.2 25 73-97 22-46 (195)
481 3i8s_A Ferrous iron transport 92.0 0.47 1.6E-05 43.2 8.2 23 75-97 4-26 (274)
482 1w1w_A Structural maintenance 92.0 0.11 3.9E-06 50.3 4.2 30 72-101 24-53 (430)
483 2x2e_A Dynamin-1; nitration, h 92.0 0.37 1.3E-05 45.5 7.7 26 71-97 29-54 (353)
484 3dz8_A RAS-related protein RAB 91.9 0.093 3.2E-06 43.9 3.1 24 75-98 24-47 (191)
485 1vg8_A RAS-related protein RAB 91.9 0.11 3.7E-06 43.6 3.5 27 72-98 6-32 (207)
486 3ozx_A RNAse L inhibitor; ATP 91.9 0.081 2.8E-06 53.8 3.2 24 75-98 26-49 (538)
487 3pqc_A Probable GTP-binding pr 91.9 0.069 2.4E-06 44.0 2.2 24 75-98 24-47 (195)
488 2p5s_A RAS and EF-hand domain 91.9 0.12 4E-06 43.7 3.7 26 72-97 26-51 (199)
489 1x3s_A RAS-related protein RAB 91.8 0.1 3.4E-06 43.2 3.2 24 74-97 15-38 (195)
490 2fwr_A DNA repair protein RAD2 91.8 0.1 3.5E-06 50.3 3.7 37 76-112 110-147 (472)
491 1z06_A RAS-related protein RAB 91.8 0.11 3.8E-06 43.2 3.5 24 74-97 20-43 (189)
492 2fg5_A RAB-22B, RAS-related pr 91.8 0.093 3.2E-06 44.0 3.0 25 74-98 23-47 (192)
493 2cxx_A Probable GTP-binding pr 91.8 0.081 2.8E-06 43.5 2.6 22 76-97 3-24 (190)
494 3cph_A RAS-related protein SEC 91.7 0.12 4.2E-06 43.4 3.7 26 72-97 18-43 (213)
495 4ag6_A VIRB4 ATPase, type IV s 91.7 0.17 5.7E-06 48.3 4.9 33 75-107 36-71 (392)
496 2qnr_A Septin-2, protein NEDD5 91.7 0.084 2.9E-06 49.3 2.8 25 73-97 17-41 (301)
497 3t5g_A GTP-binding protein RHE 91.6 0.1 3.5E-06 42.8 3.0 24 74-97 6-29 (181)
498 1mky_A Probable GTP-binding pr 91.6 0.22 7.7E-06 48.5 5.8 26 73-98 179-204 (439)
499 3c5c_A RAS-like protein 12; GD 91.5 0.11 3.9E-06 43.6 3.2 23 75-97 22-44 (187)
500 2bov_A RAla, RAS-related prote 91.5 0.11 3.8E-06 43.3 3.2 25 74-98 14-38 (206)
No 1
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=100.00 E-value=5e-66 Score=484.11 Aligned_cols=292 Identities=53% Similarity=0.977 Sum_probs=252.3
Q ss_pred hhhhhcccccccHHHHHHHHHHHHHHHHHhhcCCCCCeEEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccccccCC
Q 019334 38 SFEYLQGDYYIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGE 117 (342)
Q Consensus 38 ~f~~~~~~~y~~~~f~d~l~~hi~K~~l~~~~~~k~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~~~GE 117 (342)
+|+++.++||+||+|+|+++.|++|+++. .++.++|++++||||||||||++|+++|+++|.+++.++++++.++|+|+
T Consensus 1 ~~~~~~~~~y~~~~~~~~~~~~~~k~~l~-~~~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~ 79 (293)
T 3t15_A 1 NLDNKLDGFYIAPAFMDKLVVHITKNFLK-LPNIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGE 79 (293)
T ss_dssp CCCCEETTEECCHHHHHHHHHHHHHTTSC-CTTCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---H
T ss_pred CcccccCcccCCHHHHHHHHHHHHHHHHh-cCCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCch
Confidence 47899999999999999999999999998 88899999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHhhhhcCCceEEEeecccccCCCCC-CCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCcc
Q 019334 118 PGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIP 196 (342)
Q Consensus 118 sEr~iR~~F~~A~e~~~~~~~PcILfIDEIDAg~~r~~-~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~ 196 (342)
+++.++++|+.|.+.++ +.+||||||||||+++++++ .++++++++.++.+|++++|+++.+++++.|...+ ..+|+
T Consensus 80 ~~~~i~~~f~~a~~~~~-~~~~~vl~iDEiD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~-~~~v~ 157 (293)
T 3t15_A 80 PAKLIRQRYREAAEIIR-KGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQE-NARVP 157 (293)
T ss_dssp HHHHHHHHHHHHHHHHT-TSSCCCEEEECCC--------------CHHHHHHHHHHHHHCCC-----------C-CCCCC
T ss_pred hHHHHHHHHHHHHHHHh-cCCCeEEEEechhhhcCCCCCCccccchHHHHHHHHHHHhcccccccccccccccc-CCCcE
Confidence 99999999999987765 67899999999999998776 55556667889999999999999888888666554 67899
Q ss_pred EEEeeCCCCCCccCCCCCCCCcceecCCCHHHHHHHHHHHhhcCCCCHHHHHHHhhcCCCCccchHHHHHHHHHHHHHHH
Q 019334 197 IIFTGNDFSTIYAPLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISK 276 (342)
Q Consensus 197 VIatTNr~~~LdpaLlRpGRfD~~i~vP~~~~R~~Il~~~~~~~~~s~~di~~lvd~f~~~~~df~gAlrs~~~~e~ir~ 276 (342)
||+|||+++.|||||+|+||||+++++|+.++|.+|++.++...+++..++++++++|++++++|++|+|++++++++++
T Consensus 158 vI~ttN~~~~ld~al~R~~R~d~~i~~P~~~~r~~Il~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~l~~~~~~~~i~~ 237 (293)
T 3t15_A 158 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCTGIFRTDNVPAEDVVKIVDNFPGQSIDFFGALRARVYDDEVRK 237 (293)
T ss_dssp EEEECSSCCC--CHHHHHHHEEEEEECCCHHHHHHHHHHHHGGGCCCHHHHHHHHHHSCSCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEecCCcccCCHHHhCCCCCceeEeCcCHHHHHHHHHHhccCCCCCHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCcchhhhhhhcccCCCCCCcccCCcCCHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 019334 277 WIDDIGGVENLGNKLLKRRKDKELPVFTPPEKTVEALLESGYSLLREQQLIMETKLSKE 335 (342)
Q Consensus 277 w~~~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~l~~eq~~v~~~~l~~~ 335 (342)
|+++. |++++.+++++++++ +|.|.+|++|+++|+++|+.|++||++|++++|+++
T Consensus 238 ~~~~~-g~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~g~~~~~eq~~~~~~~l~~~ 293 (293)
T 3t15_A 238 WVSGT-GIEKIGDKLLNSFDG--PPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADK 293 (293)
T ss_dssp HHHHT-CSTTCHHHHTSCSSC--SCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHh-CHHHHHHHHHcCCCC--CCCCCCccccHHHHHHHHHHHHHHHHHHHHhhcccC
Confidence 99999 999999999999876 599999999999999999999999999999999974
No 2
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.7e-46 Score=367.62 Aligned_cols=209 Identities=17% Similarity=0.177 Sum_probs=170.9
Q ss_pred HHHHHHHHHHHHHHHHh-------------hcCCCCCeEEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccccccCC
Q 019334 51 VFMASLLCHIVKNYIAH-------------LLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGE 117 (342)
Q Consensus 51 ~f~d~l~~hi~K~~l~~-------------~~~~k~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~~~GE 117 (342)
.|-|++|+.-.|..+.+ ..|+++|+|+|||||||||||++|+|+|+++|++|+.+++++++++|+||
T Consensus 146 ~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk~vGe 225 (405)
T 4b4t_J 146 TYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIGE 225 (405)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCSSTTH
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhccccch
Confidence 57777777777777765 24899999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHhhhhcCCceEEEeecccccCCCCC--CCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCc
Q 019334 118 PGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG--NTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRI 195 (342)
Q Consensus 118 sEr~iR~~F~~A~e~~~~~~~PcILfIDEIDAg~~r~~--~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V 195 (342)
+|++||++|..|++. +||||||||||+++++++ +++++...+++..+||+.||+ .....+|
T Consensus 226 se~~vr~lF~~Ar~~-----aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg------------~~~~~~V 288 (405)
T 4b4t_J 226 GSRMVRELFVMAREH-----APSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDG------------FETSKNI 288 (405)
T ss_dssp HHHHHHHHHHHHHHT-----CSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHT------------TTCCCCE
T ss_pred HHHHHHHHHHHHHHh-----CCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhc------------cCCCCCe
Confidence 999999999999854 599999999999998775 223333345567788888885 1125789
Q ss_pred cEEEeeCCCCCCccCCCCCCCCcceecC--CCHHHHHHHHHHHhhcCCCC-HHHHHHHhhcCCCCccchHHHHHHHHHHH
Q 019334 196 PIIFTGNDFSTIYAPLIRDGRMEKFYWQ--PNLEDILNIVHRMYEKDGIT-KDEVGSIVKTFPNQALDFYGALRSRTYDR 272 (342)
Q Consensus 196 ~VIatTNr~~~LdpaLlRpGRfD~~i~v--P~~~~R~~Il~~~~~~~~~s-~~di~~lvd~f~~~~~df~gAlrs~~~~e 272 (342)
+||+|||||+.|||||+||||||+.|++ ||.++|.+||+.|+++.+++ ..|+..++.... .|.||....++.+
T Consensus 289 ~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA~~t~----G~SGADi~~l~~e 364 (405)
T 4b4t_J 289 KIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMN----GCSGADVKGVCTE 364 (405)
T ss_dssp EEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHHHHCC----SCCHHHHHHHHHH
T ss_pred EEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHCC----CCCHHHHHHHHHH
Confidence 9999999999999999999999998886 99999999999999887654 235555554332 3567777777877
Q ss_pred HHHHHHHH
Q 019334 273 SISKWIDD 280 (342)
Q Consensus 273 ~ir~w~~~ 280 (342)
+....+++
T Consensus 365 A~~~Air~ 372 (405)
T 4b4t_J 365 AGMYALRE 372 (405)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHc
Confidence 76555543
No 3
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.8e-45 Score=365.15 Aligned_cols=210 Identities=20% Similarity=0.196 Sum_probs=168.6
Q ss_pred HHHHHHHHHHHHHHHHHh-------------hcCCCCCeEEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccccccC
Q 019334 50 PVFMASLLCHIVKNYIAH-------------LLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAG 116 (342)
Q Consensus 50 ~~f~d~l~~hi~K~~l~~-------------~~~~k~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~~~G 116 (342)
-.|.|++|+.-.|..+.+ ..|+++|+|+|||||||||||++|+|+|++++++|+.+++++|+++|+|
T Consensus 179 v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~sk~vG 258 (437)
T 4b4t_I 179 ESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLG 258 (437)
T ss_dssp CCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCCSSSS
T ss_pred CcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhhccCc
Confidence 467778887777777765 2589999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHhhhhcCCceEEEeecccccCCCCC--CCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCC
Q 019334 117 EPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG--NTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNR 194 (342)
Q Consensus 117 EsEr~iR~~F~~A~e~~~~~~~PcILfIDEIDAg~~r~~--~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~ 194 (342)
|+|+++|++|..|++. +||||||||||+++++|+ +++++...+++..+||+.+|+ .+...+
T Consensus 259 esek~ir~lF~~Ar~~-----aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg------------~~~~~~ 321 (437)
T 4b4t_I 259 DGPRLCRQIFKVAGEN-----APSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDG------------FDDRGD 321 (437)
T ss_dssp HHHHHHHHHHHHHHHT-----CSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHH------------CCCSSS
T ss_pred hHHHHHHHHHHHHHhc-----CCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhC------------cCCCCC
Confidence 9999999999999854 599999999999998775 222222334566778887773 122568
Q ss_pred ccEEEeeCCCCCCccCCCCCCCCcceecC--CCHHHHHHHHHHHhhcCCCCH-HHHHHHhhcCCCCccchHHHHHHHHHH
Q 019334 195 IPIIFTGNDFSTIYAPLIRDGRMEKFYWQ--PNLEDILNIVHRMYEKDGITK-DEVGSIVKTFPNQALDFYGALRSRTYD 271 (342)
Q Consensus 195 V~VIatTNr~~~LdpaLlRpGRfD~~i~v--P~~~~R~~Il~~~~~~~~~s~-~di~~lvd~f~~~~~df~gAlrs~~~~ 271 (342)
|+||+|||+|+.|||||+||||||+.|++ ||.++|.+||+.|+++..++. .|++.|+... ..|.||....++.
T Consensus 322 ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA~~T----~GfSGADI~~l~~ 397 (437)
T 4b4t_I 322 VKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTK----DDLSGADIQAMCT 397 (437)
T ss_dssp EEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHHHHC----CSCCHHHHHHHHH
T ss_pred EEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhC----CCCCHHHHHHHHH
Confidence 99999999999999999999999998876 999999999999998776542 3444444322 2355676677777
Q ss_pred HHHHHHHHH
Q 019334 272 RSISKWIDD 280 (342)
Q Consensus 272 e~ir~w~~~ 280 (342)
++....+++
T Consensus 398 eA~~~Air~ 406 (437)
T 4b4t_I 398 EAGLLALRE 406 (437)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHc
Confidence 775554443
No 4
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.8e-44 Score=357.13 Aligned_cols=208 Identities=21% Similarity=0.193 Sum_probs=165.3
Q ss_pred HHHHHHHHHHHHHHHHh-------------hcCCCCCeEEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccccccCC
Q 019334 51 VFMASLLCHIVKNYIAH-------------LLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGE 117 (342)
Q Consensus 51 ~f~d~l~~hi~K~~l~~-------------~~~~k~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~~~GE 117 (342)
+|-|++|+.-.|..+.+ ..|+++|+|+|||||||||||++|+|+|+++|++|+.+++++|+++|+||
T Consensus 179 ~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~sk~~Ge 258 (437)
T 4b4t_L 179 TFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGE 258 (437)
T ss_dssp CSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCCSSSSH
T ss_pred ChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhccccchH
Confidence 36666666666665544 35899999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHhhhhcCCceEEEeecccccCCCCC--CCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCc
Q 019334 118 PGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG--NTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRI 195 (342)
Q Consensus 118 sEr~iR~~F~~A~e~~~~~~~PcILfIDEIDAg~~r~~--~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V 195 (342)
+++++|.+|..|++ .+||||||||||+++++|+ +++.+...+++..+||+.||+ .+...+|
T Consensus 259 se~~ir~~F~~A~~-----~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg------------~~~~~~v 321 (437)
T 4b4t_L 259 SARIIREMFAYAKE-----HEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDG------------FDNLGQT 321 (437)
T ss_dssp HHHHHHHHHHHHHH-----SCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHS------------SSCTTSS
T ss_pred HHHHHHHHHHHHHh-----cCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhc------------ccCCCCe
Confidence 99999999999975 4699999999999998775 222222334566788888885 1225689
Q ss_pred cEEEeeCCCCCCccCCCCCCCCcceecC--CCHHHHHHHHHHHhhcCCCC-HHHHHHHhhcCCCCccchHHHHHHHHHHH
Q 019334 196 PIIFTGNDFSTIYAPLIRDGRMEKFYWQ--PNLEDILNIVHRMYEKDGIT-KDEVGSIVKTFPNQALDFYGALRSRTYDR 272 (342)
Q Consensus 196 ~VIatTNr~~~LdpaLlRpGRfD~~i~v--P~~~~R~~Il~~~~~~~~~s-~~di~~lvd~f~~~~~df~gAlrs~~~~e 272 (342)
+||+|||+|+.|||||+||||||+.|++ ||.++|.+||+.|+++..++ ..|+..++... ..|.||....++.+
T Consensus 322 ivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~~lA~~t----~G~sGADi~~l~~e 397 (437)
T 4b4t_L 322 KIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMS----DGFNGADIRNCATE 397 (437)
T ss_dssp EEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCHHHHHHTC----CSCCHHHHHHHHHH
T ss_pred EEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCHHHHHHhC----CCCCHHHHHHHHHH
Confidence 9999999999999999999999998886 99999999999999876543 23455554322 23567766777777
Q ss_pred HHHHHHH
Q 019334 273 SISKWID 279 (342)
Q Consensus 273 ~ir~w~~ 279 (342)
+....++
T Consensus 398 A~~~air 404 (437)
T 4b4t_L 398 AGFFAIR 404 (437)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7554444
No 5
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.9e-44 Score=358.99 Aligned_cols=206 Identities=17% Similarity=0.173 Sum_probs=165.5
Q ss_pred HHHHHHHHHHHHHHHHHh-------------hcCCCCCeEEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccccccC
Q 019334 50 PVFMASLLCHIVKNYIAH-------------LLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAG 116 (342)
Q Consensus 50 ~~f~d~l~~hi~K~~l~~-------------~~~~k~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~~~G 116 (342)
-.|-|++|..-.|..+.+ ..|+++|+|+|||||||||||++|+|+|+++|++|+.+++++|+++|+|
T Consensus 178 ~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~~~vG 257 (434)
T 4b4t_M 178 ETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMYIG 257 (434)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCSSCSS
T ss_pred CChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhhcccc
Confidence 357777777777777654 2489999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHhhhhcCCceEEEeecccccCCCCCC--CcccchhHHHHHHHHhhcCCCCccccCccccccCCCCC
Q 019334 117 EPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGN--TQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNR 194 (342)
Q Consensus 117 EsEr~iR~~F~~A~e~~~~~~~PcILfIDEIDAg~~r~~~--t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~ 194 (342)
++|+++|++|..|++. +||||||||||+++++|.+ +++....+++..+||+.||+ + ....+
T Consensus 258 ese~~ir~lF~~A~~~-----aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg---------~---~~~~~ 320 (434)
T 4b4t_M 258 EGAKLVRDAFALAKEK-----APTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDG---------F---SSDDR 320 (434)
T ss_dssp HHHHHHHHHHHHHHHH-----CSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTT---------S---CSSCS
T ss_pred hHHHHHHHHHHHHHhc-----CCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhc---------c---CCCCC
Confidence 9999999999999865 5999999999998877652 22222234566778888885 1 11468
Q ss_pred ccEEEeeCCCCCCccCCCCCCCCcceecC--CCHHHHHHHHHHHhhcCC----CCHHHHHHHhhcCCCCccchHHHHHHH
Q 019334 195 IPIIFTGNDFSTIYAPLIRDGRMEKFYWQ--PNLEDILNIVHRMYEKDG----ITKDEVGSIVKTFPNQALDFYGALRSR 268 (342)
Q Consensus 195 V~VIatTNr~~~LdpaLlRpGRfD~~i~v--P~~~~R~~Il~~~~~~~~----~s~~di~~lvd~f~~~~~df~gAlrs~ 268 (342)
|+||+|||+|+.|||||+||||||+.|++ ||.++|.+||+.|+++.. ++.++|++.+++| .||....
T Consensus 321 ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~-------sGADi~~ 393 (434)
T 4b4t_M 321 VKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEF-------NGAQLKA 393 (434)
T ss_dssp SEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHHHCSSC-------CHHHHHH
T ss_pred EEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCC-------CHHHHHH
Confidence 99999999999999999999999998875 999999999999998765 4445555555544 4565556
Q ss_pred HHHHHHHHHHH
Q 019334 269 TYDRSISKWID 279 (342)
Q Consensus 269 ~~~e~ir~w~~ 279 (342)
++.++....++
T Consensus 394 l~~eA~~~a~r 404 (434)
T 4b4t_M 394 VTVEAGMIALR 404 (434)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666444443
No 6
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.8e-44 Score=358.21 Aligned_cols=206 Identities=19% Similarity=0.208 Sum_probs=166.5
Q ss_pred HHHHHHHHHHHHHHHHh-------------hcCCCCCeEEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccccccCC
Q 019334 51 VFMASLLCHIVKNYIAH-------------LLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGE 117 (342)
Q Consensus 51 ~f~d~l~~hi~K~~l~~-------------~~~~k~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~~~GE 117 (342)
.|-|++|+.-.|..+.+ ..|+++|+|+|||||||||||++|+|+|++++++|+.+++++|+++|+||
T Consensus 207 t~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~sk~vGe 286 (467)
T 4b4t_H 207 TYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGE 286 (467)
T ss_dssp CCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCCCSSSH
T ss_pred CHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhcccCCH
Confidence 46677777777777755 25899999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHhhhhcCCceEEEeecccccCCCCCC--CcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCc
Q 019334 118 PGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGN--TQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRI 195 (342)
Q Consensus 118 sEr~iR~~F~~A~e~~~~~~~PcILfIDEIDAg~~r~~~--t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V 195 (342)
+|+++|++|..|++ .+||||||||||+++++|+. ++.....+++..+||+.||+ .....+|
T Consensus 287 sek~ir~lF~~Ar~-----~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg------------~~~~~~V 349 (467)
T 4b4t_H 287 GARMVRELFEMART-----KKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDG------------FDPRGNI 349 (467)
T ss_dssp HHHHHHHHHHHHHH-----TCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHS------------SCCTTTE
T ss_pred HHHHHHHHHHHHHh-----cCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhc------------cCCCCcE
Confidence 99999999999975 46999999999999987752 22222334456677777774 1225689
Q ss_pred cEEEeeCCCCCCccCCCCCCCCcceecC--CCHHHHHHHHHHHhhcCCC----CHHHHHHHhhcCCCCccchHHHHHHHH
Q 019334 196 PIIFTGNDFSTIYAPLIRDGRMEKFYWQ--PNLEDILNIVHRMYEKDGI----TKDEVGSIVKTFPNQALDFYGALRSRT 269 (342)
Q Consensus 196 ~VIatTNr~~~LdpaLlRpGRfD~~i~v--P~~~~R~~Il~~~~~~~~~----s~~di~~lvd~f~~~~~df~gAlrs~~ 269 (342)
+||+|||||+.|||||+||||||+.|++ ||.++|.+||+.|+++..+ +.+.|++.+++ |.||....+
T Consensus 350 iVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~G-------fSGADI~~l 422 (467)
T 4b4t_H 350 KVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPN-------STGAELRSV 422 (467)
T ss_dssp EEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHHCCS-------CCHHHHHHH
T ss_pred EEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHCCC-------CCHHHHHHH
Confidence 9999999999999999999999998886 9999999999999987654 34445554444 456766777
Q ss_pred HHHHHHHHHHH
Q 019334 270 YDRSISKWIDD 280 (342)
Q Consensus 270 ~~e~ir~w~~~ 280 (342)
+.++....+++
T Consensus 423 ~~eAa~~Air~ 433 (467)
T 4b4t_H 423 CTEAGMFAIRA 433 (467)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHc
Confidence 77776555544
No 7
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.6e-43 Score=350.45 Aligned_cols=208 Identities=16% Similarity=0.206 Sum_probs=165.9
Q ss_pred HHHHHHHHHHHHHHHHh-------------hcCCCCCeEEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccccccCC
Q 019334 51 VFMASLLCHIVKNYIAH-------------LLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGE 117 (342)
Q Consensus 51 ~f~d~l~~hi~K~~l~~-------------~~~~k~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~~~GE 117 (342)
.|-|++|+.-.|..+.+ ..|+++|+|+|||||||||||++|+|+|+++|++|+.+++++++++|+|+
T Consensus 170 ~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~~~~Ge 249 (428)
T 4b4t_K 170 TYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLGE 249 (428)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCCSSCSH
T ss_pred CHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhccccch
Confidence 57777777777776655 24899999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHhhhhcCCceEEEeecccccCCCCC--CCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCc
Q 019334 118 PGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG--NTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRI 195 (342)
Q Consensus 118 sEr~iR~~F~~A~e~~~~~~~PcILfIDEIDAg~~r~~--~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V 195 (342)
+|++||++|..|++. +||||||||||+++++++ +++++...+++..+||+.|||. ....+|
T Consensus 250 ~e~~ir~lF~~A~~~-----aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~------------~~~~~v 312 (428)
T 4b4t_K 250 GPRMVRDVFRLAREN-----APSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGF------------DQSTNV 312 (428)
T ss_dssp HHHHHHHHHHHHHHT-----CSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHS------------CSSCSE
T ss_pred hHHHHHHHHHHHHHc-----CCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCC------------CCCCCE
Confidence 999999999999854 599999999999887664 2223333456778899988851 115689
Q ss_pred cEEEeeCCCCCCccCCCCCCCCcceecC---CCHHHHHHHHHHHhhcCCCC-HHHHHHHhhcCCCCccchHHHHHHHHHH
Q 019334 196 PIIFTGNDFSTIYAPLIRDGRMEKFYWQ---PNLEDILNIVHRMYEKDGIT-KDEVGSIVKTFPNQALDFYGALRSRTYD 271 (342)
Q Consensus 196 ~VIatTNr~~~LdpaLlRpGRfD~~i~v---P~~~~R~~Il~~~~~~~~~s-~~di~~lvd~f~~~~~df~gAlrs~~~~ 271 (342)
+||+|||+|+.|||||+||||||+.|++ |+.++|.+||+.++++.+++ ..|+..++... ..|.||.-..++.
T Consensus 313 ~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl~~lA~~t----~G~sgadi~~l~~ 388 (428)
T 4b4t_K 313 KVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLIIRN----DSLSGAVIAAIMQ 388 (428)
T ss_dssp EEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCHHHHHHHT----TTCCHHHHHHHHH
T ss_pred EEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHHC----CCCCHHHHHHHHH
Confidence 9999999999999999999999997754 79999999999999887653 23445444322 2345666666676
Q ss_pred HHHHHHHH
Q 019334 272 RSISKWID 279 (342)
Q Consensus 272 e~ir~w~~ 279 (342)
++....++
T Consensus 389 eA~~~a~r 396 (428)
T 4b4t_K 389 EAGLRAVR 396 (428)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66544444
No 8
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=3.5e-41 Score=358.03 Aligned_cols=201 Identities=18% Similarity=0.211 Sum_probs=142.8
Q ss_pred HHHHHHHHHHHHHHhh-------------cCCCCCeEEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccccccCCcH
Q 019334 53 MASLLCHIVKNYIAHL-------------LNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPG 119 (342)
Q Consensus 53 ~d~l~~hi~K~~l~~~-------------~~~k~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~~~GEsE 119 (342)
-|.+++.-+|+.+.+. .++++|+++|||||||||||++|+|+|++++++|+.+++++|+++|+||+|
T Consensus 477 ~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~vGese 556 (806)
T 3cf2_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESE 556 (806)
T ss_dssp TTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTTTCSSCH
T ss_pred HHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhccccchHH
Confidence 3445666677776551 378899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhcCCceEEEeecccccCCCCC-CC-cccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccE
Q 019334 120 KLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NT-QMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPI 197 (342)
Q Consensus 120 r~iR~~F~~A~e~~~~~~~PcILfIDEIDAg~~r~~-~t-~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~V 197 (342)
++||++|+.|++ .+||||||||||+++++|+ +. ..+...+++..+||+.||+. ....+|+|
T Consensus 557 ~~vr~lF~~Ar~-----~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~------------~~~~~V~v 619 (806)
T 3cf2_A 557 ANVREIFDKARQ-----AAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGM------------STKKNVFI 619 (806)
T ss_dssp HHHHHHHHHHHT-----TCSEEEECSCGGGCC--------------CHHHHHHHHHHHSS------------CSSSSEEE
T ss_pred HHHHHHHHHHHH-----cCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCC------------CCCCCEEE
Confidence 999999999974 4699999999999998776 21 11222356788999999951 11468999
Q ss_pred EEeeCCCCCCccCCCCCCCCcceecC--CCHHHHHHHHHHHhhcCCCC-HHHHHHHhhcCCCCccchHHHHHHHHHHHHH
Q 019334 198 IFTGNDFSTIYAPLIRDGRMEKFYWQ--PNLEDILNIVHRMYEKDGIT-KDEVGSIVKTFPNQALDFYGALRSRTYDRSI 274 (342)
Q Consensus 198 IatTNr~~~LdpaLlRpGRfD~~i~v--P~~~~R~~Il~~~~~~~~~s-~~di~~lvd~f~~~~~df~gAlrs~~~~e~i 274 (342)
|+|||||+.|||||+||||||+.+++ ||.++|.+||+.++++.+++ ..|++.|+. .+..|+||....++.++.
T Consensus 620 i~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~dl~~la~----~t~g~SGadi~~l~~~A~ 695 (806)
T 3cf2_A 620 IGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAK----MTNGFSGADLTEICQRAC 695 (806)
T ss_dssp ECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC--------------------CHHHHHHHHH
T ss_pred EEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHH----hCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999998886 99999999999999877653 344444442 122344444444555543
No 9
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=1.6e-38 Score=337.56 Aligned_cols=172 Identities=20% Similarity=0.268 Sum_probs=146.8
Q ss_pred hcCCCCCeEEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccccccCCcHHHHHHHHHHHHHhhhhcCCceEEEeecc
Q 019334 68 LLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDI 147 (342)
Q Consensus 68 ~~~~k~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~~~GEsEr~iR~~F~~A~e~~~~~~~PcILfIDEI 147 (342)
..++++|+|+|||||||||||++|||+|+++|++|+.++++++.++|+|++|+++|++|++|++ .+|||||||||
T Consensus 232 ~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk~~gese~~lr~lF~~A~~-----~~PsIIfIDEi 306 (806)
T 3cf2_A 232 AIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEK-----NAPAIIFIDEL 306 (806)
T ss_dssp SCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSSCTTHHHHHHHHHHHHHTT-----SCSEEEEEESG
T ss_pred hcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhcccchHHHHHHHHHHHHHHH-----cCCeEEEEehh
Confidence 3588999999999999999999999999999999999999999999999999999999999964 56999999999
Q ss_pred cccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCCccCCCCCCCCcceecC--CC
Q 019334 148 DAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQ--PN 225 (342)
Q Consensus 148 DAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~~~LdpaLlRpGRfD~~i~v--P~ 225 (342)
|+++++++++++.+ .++++.+|+++||+. ....+|+||+|||+|+.|||+|+||||||+.|.+ ||
T Consensus 307 Dal~~~r~~~~~~~-~~riv~~LL~~mdg~------------~~~~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd 373 (806)
T 3cf2_A 307 DAIAPKREKTHGEV-ERRIVSQLLTLMDGL------------KQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPD 373 (806)
T ss_dssp GGTCCTTTTCCCTT-HHHHHHHHHTHHHHC------------CGGGCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCC
T ss_pred cccccccCCCCChH-HHHHHHHHHHHHhcc------------cccCCEEEEEecCChhhcCHHHhCCcccceEEecCCCC
Confidence 99999887555444 356788999998851 1145799999999999999999999999998875 99
Q ss_pred HHHHHHHHHHHhhcCC----CCHHHHHHHhhcCCCC
Q 019334 226 LEDILNIVHRMYEKDG----ITKDEVGSIVKTFPNQ 257 (342)
Q Consensus 226 ~~~R~~Il~~~~~~~~----~s~~di~~lvd~f~~~ 257 (342)
.++|.+||+.++++.. ++..+++..+.+|+|+
T Consensus 374 ~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~Gfsga 409 (806)
T 3cf2_A 374 ATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGA 409 (806)
T ss_dssp HHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCHH
T ss_pred HHHHHHHHHHHhcCCCCCcccCHHHHHHhcCCCCHH
Confidence 9999999999998764 3445555555555443
No 10
>3thg_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; four-helix bundle, rubisco reactivation, chloroplast stroma, ATPase; 1.88A {Larrea tridentata}
Probab=100.00 E-value=2.6e-36 Score=249.97 Aligned_cols=102 Identities=34% Similarity=0.759 Sum_probs=95.7
Q ss_pred CHHHHHHHHHHHhhcCCCCHHHHHHHhhcCCCCccchHHHHHHHHHHHHHHHHHHHcCCcchhhhhhhcccCCCCCCccc
Q 019334 225 NLEDILNIVHRMYEKDGITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDIGGVENLGNKLLKRRKDKELPVFT 304 (342)
Q Consensus 225 ~~~~R~~Il~~~~~~~~~s~~di~~lvd~f~~~~~df~gAlrs~~~~e~ir~w~~~~~g~~~~~~~l~~~~~~~~~~~~~ 304 (342)
++++|..|++.++++++++.+|+++|||+||+|+||||||||||+||++||+|+.++ |+|++|++|||++++ +|+|+
T Consensus 6 treDrigiv~gif~~Dgls~~dv~~LVd~Fp~QsiDFFGALRsR~YDd~Vr~wI~~v-G~e~ig~~Lvns~e~--~P~F~ 82 (107)
T 3thg_A 6 TREDRIGVCKGIFRTDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWVSEV-GVDTIGKKLVNSKEG--PPSFE 82 (107)
T ss_dssp CHHHHHHHHHHHTTTTTCCHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHTTCCCC--CCCCC
T ss_pred cHHHHHHHHHHHhccCCCCHHHHHHHHHcCCCCCchHHHHHHHHHhHHHHHHHHHHh-CHHHHhHHHHcCCCC--CCCCC
Confidence 899999999999999999999999999999999999999999999999999999999 999999999999988 59999
Q ss_pred CCcCCHHHHHHHHHHHHHHHHHHHh
Q 019334 305 PPEKTVEALLESGYSLLREQQLIME 329 (342)
Q Consensus 305 ~~~~~~~~l~~~g~~l~~eq~~v~~ 329 (342)
+|+|||++||++|++|++|||||++
T Consensus 83 ~P~~tl~~Lle~G~~Lv~EQ~~V~~ 107 (107)
T 3thg_A 83 QPKMTIDKLLGYGGMLVQEQENVKR 107 (107)
T ss_dssp CCCCCHHHHHHHHHHHHTTC-----
T ss_pred CCcCCHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999985
No 11
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=100.00 E-value=2.3e-33 Score=261.51 Aligned_cols=210 Identities=17% Similarity=0.225 Sum_probs=155.7
Q ss_pred HHHHHHHHHHHHHHHHh-------------hcCCCCCeEEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccccccCC
Q 019334 51 VFMASLLCHIVKNYIAH-------------LLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGE 117 (342)
Q Consensus 51 ~f~d~l~~hi~K~~l~~-------------~~~~k~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~~~GE 117 (342)
.|.|.++..-+|.++.+ ..++.+|.|++|+||||||||++++++|++++.+++.+++.++.++|.|+
T Consensus 8 ~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~~~~~ 87 (274)
T 2x8a_A 8 TWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGE 87 (274)
T ss_dssp ----CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSSTTHH
T ss_pred CHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhhhhhH
Confidence 45566666666666543 24789999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHhhhhcCCceEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccE
Q 019334 118 PGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPI 197 (342)
Q Consensus 118 sEr~iR~~F~~A~e~~~~~~~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~V 197 (342)
+++.++.+|..|.. ..||++||||||++++.++...... ..++..++++.||+ | +. +..+++
T Consensus 88 ~~~~i~~vf~~a~~-----~~p~i~~~Deid~~~~~r~~~~~~~-~~~~~~~~l~~Lsg-------g----~~-~~~~i~ 149 (274)
T 2x8a_A 88 SERAVRQVFQRAKN-----SAPCVIFFDEVDALCPRRSDRETGA-SVRVVNQLLTEMDG-------L----EA-RQQVFI 149 (274)
T ss_dssp HHHHHHHHHHHHHH-----TCSEEEEEETCTTTCC----------CTTHHHHHHHHHHT-------C----CS-TTCEEE
T ss_pred HHHHHHHHHHHHHh-----cCCCeEeeehhhhhhcccCCCcchH-HHHHHHHHHHhhhc-------c----cc-cCCEEE
Confidence 99999999998864 3599999999999887654211111 23455677777774 1 12 567899
Q ss_pred EEeeCCCCCCccCCCCCCCCcceecC--CCHHHHHHHHHHHhhcC---CC-CHHHHHHHhhcCCCCccchHHHHHHHHHH
Q 019334 198 IFTGNDFSTIYAPLIRDGRMEKFYWQ--PNLEDILNIVHRMYEKD---GI-TKDEVGSIVKTFPNQALDFYGALRSRTYD 271 (342)
Q Consensus 198 IatTNr~~~LdpaLlRpGRfD~~i~v--P~~~~R~~Il~~~~~~~---~~-s~~di~~lvd~f~~~~~df~gAlrs~~~~ 271 (342)
+++||+|+.|||||+||||||+++++ |+.++|.+||+.+++.. .+ +..+++.++... ....|.||....++.
T Consensus 150 ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~--~~~g~sgadl~~l~~ 227 (274)
T 2x8a_A 150 MAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDL--RCDCYTGADLSALVR 227 (274)
T ss_dssp EEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCS--GGGSCCHHHHHHHHH
T ss_pred EeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhh--ccCCcCHHHHHHHHH
Confidence 99999999999999999999998886 99999999999988642 12 234555554311 112566777777777
Q ss_pred HHHHHHHHH
Q 019334 272 RSISKWIDD 280 (342)
Q Consensus 272 e~ir~w~~~ 280 (342)
++....+++
T Consensus 228 ~a~~~a~~~ 236 (274)
T 2x8a_A 228 EASICALRQ 236 (274)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 776555544
No 12
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.6e-32 Score=260.58 Aligned_cols=186 Identities=17% Similarity=0.191 Sum_probs=151.6
Q ss_pred CCCCeEEEeecCCCCCHHHHHHHHHHHh-CCceEEeecccccccccCCcHHHHHHHHHHHHHhhhhcCCceEEEeecccc
Q 019334 71 VKVPLILGIWGGKGQGKSFQTELIFQAM-GIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDA 149 (342)
Q Consensus 71 ~k~PlglgL~GPPG~GKTllaravA~~~-g~~~i~vs~~eL~s~~~GEsEr~iR~~F~~A~e~~~~~~~PcILfIDEIDA 149 (342)
.++|.+++||||||||||++|+++|+++ +.+|+.++++++.++|.|++++.++++|..|.. .+||||||||||+
T Consensus 42 ~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~~~~g~~~~~~~~lf~~a~~-----~~~~vl~iDEid~ 116 (322)
T 1xwi_A 42 RTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARE-----NKPSIIFIDEIDS 116 (322)
T ss_dssp CCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCCSSCCSCHHHHHHHHHHHHH-----TSSEEEEEETTTG
T ss_pred CCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHhhhhhHHHHHHHHHHHHHHh-----cCCcEEEeecHHH
Confidence 5677999999999999999999999999 999999999999999999999999999998863 4699999999999
Q ss_pred cCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCCccCCCCCCCCcceecC--CCHH
Q 019334 150 GLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQ--PNLE 227 (342)
Q Consensus 150 g~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~~~LdpaLlRpGRfD~~i~v--P~~~ 227 (342)
++++++...... .+++..+|++.+|+. ..+ ..+|.||+|||+|+.|||+|+| |||+.+++ |+.+
T Consensus 117 l~~~~~~~~~~~-~~~~~~~ll~~ld~~----------~~~-~~~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~ 182 (322)
T 1xwi_A 117 LCGSRSENESEA-ARRIKTEFLVQMQGV----------GVD-NDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEPH 182 (322)
T ss_dssp GGCCSSSCCTTH-HHHHHHHHHHHHHCS----------SSC-CTTEEEEEEESCTTTSCHHHHH--TCCEEEECCCCCHH
T ss_pred hccccccccchH-HHHHHHHHHHHHhcc----------ccc-CCCEEEEEecCCcccCCHHHHh--hcCeEEEeCCcCHH
Confidence 988766433333 355777888888851 011 4689999999999999999999 99998775 9999
Q ss_pred HHHHHHHHHhhcCC--CCHHHHHHHhhcCCCCccchHHHHHHHHHHHHHHHHHH
Q 019334 228 DILNIVHRMYEKDG--ITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWID 279 (342)
Q Consensus 228 ~R~~Il~~~~~~~~--~s~~di~~lvd~f~~~~~df~gAlrs~~~~e~ir~w~~ 279 (342)
+|.+||+.+++..+ ++..++..++.... .|.+|....++.++....++
T Consensus 183 ~r~~il~~~l~~~~~~l~~~~l~~la~~t~----G~sgadl~~l~~~A~~~a~r 232 (322)
T 1xwi_A 183 ARAAMFKLHLGTTQNSLTEADFRELGRKTD----GYSGADISIIVRDALMQPVR 232 (322)
T ss_dssp HHHHHHHHHHTTCCBCCCHHHHHHHHHTCT----TCCHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHcC----CCCHHHHHHHHHHHHHHHHH
Confidence 99999999998765 57788888875433 34566666666666443333
No 13
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=100.00 E-value=9.1e-33 Score=258.35 Aligned_cols=171 Identities=17% Similarity=0.245 Sum_probs=140.8
Q ss_pred cCCCCCeEEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccccccCCcHHHHHHHHHHHHHhhhhcCCceEEEeeccc
Q 019334 69 LNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDID 148 (342)
Q Consensus 69 ~~~k~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~~~GEsEr~iR~~F~~A~e~~~~~~~PcILfIDEID 148 (342)
.++++|.+++||||||||||++|+++|++++.+++.++++++.++|.|++++.++.+|..|.. .+||||||||||
T Consensus 44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~~~~g~~~~~~~~~f~~a~~-----~~p~il~iDEid 118 (301)
T 3cf0_A 44 FGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQ-----AAPCVLFFDELD 118 (301)
T ss_dssp HCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHHHHTTCTTHHHHHHHHHHH-----TCSEEEEECSTT
T ss_pred cCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhhhcCchHHHHHHHHHHHHh-----cCCeEEEEEChH
Confidence 467889999999999999999999999999999999999999999999999999999998864 469999999999
Q ss_pred ccCCCCCC---CcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCCccCCCCCCCCcceecC--
Q 019334 149 AGLGRFGN---TQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQ-- 223 (342)
Q Consensus 149 Ag~~r~~~---t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~~~LdpaLlRpGRfD~~i~v-- 223 (342)
++++.+++ ..+.. .+++..+|++.+|+. ....+|.||+|||+++.|||+++|+||||+.+++
T Consensus 119 ~l~~~~~~~~~~~~~~-~~~~~~~lL~~l~~~------------~~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~ 185 (301)
T 3cf0_A 119 SIAKARGGNIGDGGGA-ADRVINQILTEMDGM------------STKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPL 185 (301)
T ss_dssp HHHHHHTTTTCCSSCS-CCHHHHHHHHHHHSS------------CTTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCC
T ss_pred HHhhccCCCcCCcchH-HHHHHHHHHHHhhcc------------cCCCCEEEEEecCCccccChHHhcCCccceEEecCC
Confidence 98764431 11122 234667888888741 1146799999999999999999999999997775
Q ss_pred CCHHHHHHHHHHHhhcCC----CCHHHHHHHhhcCCCC
Q 019334 224 PNLEDILNIVHRMYEKDG----ITKDEVGSIVKTFPNQ 257 (342)
Q Consensus 224 P~~~~R~~Il~~~~~~~~----~s~~di~~lvd~f~~~ 257 (342)
|+.++|.+|++.+++..+ ++.+.+.....+|+|.
T Consensus 186 p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~sg~ 223 (301)
T 3cf0_A 186 PDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGA 223 (301)
T ss_dssp CCHHHHHHHHHHHHTTSCBCSSCCHHHHHHTCSSCCHH
T ss_pred cCHHHHHHHHHHHHccCCCCccchHHHHHHHcCCCCHH
Confidence 999999999999887654 4455666655566654
No 14
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.97 E-value=7.6e-32 Score=253.92 Aligned_cols=181 Identities=18% Similarity=0.242 Sum_probs=145.6
Q ss_pred CCCCCeEEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccccccCCcHHHHHHHHHHHHHhhhhcCCceEEEeecccc
Q 019334 70 NVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDA 149 (342)
Q Consensus 70 ~~k~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~~~GEsEr~iR~~F~~A~e~~~~~~~PcILfIDEIDA 149 (342)
+.++|.+++||||||||||++|+++|++++.+|+.++++++.++|+|++++.++++|..|.. .+||||||||||+
T Consensus 47 ~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~-----~~~~vl~iDEid~ 121 (322)
T 3eie_A 47 NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARE-----NKPSIIFIDQVDA 121 (322)
T ss_dssp TCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHHTTTGGGHHHHHHHHHHHHHH-----TSSEEEEEECGGG
T ss_pred CCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHhhcccchHHHHHHHHHHHHHh-----cCCeEEEechhhh
Confidence 45678999999999999999999999999999999999999999999999999999998874 4699999999999
Q ss_pred cCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCCccCCCCCCCCcceecC--CCHH
Q 019334 150 GLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQ--PNLE 227 (342)
Q Consensus 150 g~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~~~LdpaLlRpGRfD~~i~v--P~~~ 227 (342)
++++++..+... .+++..+|+..+|+. ... ..+|.||+|||+|+.|||+|+| |||+.+++ |+.+
T Consensus 122 l~~~~~~~~~~~-~~~~~~~ll~~l~~~----------~~~-~~~v~vi~atn~~~~ld~al~~--Rf~~~i~~~~p~~~ 187 (322)
T 3eie_A 122 LTGTRGEGESEA-SRRIKTELLVQMNGV----------GND-SQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLA 187 (322)
T ss_dssp GSCC------CC-THHHHHHHHHHHGGG----------GTS-CCCEEEEEEESCGGGSCHHHHH--HCCEEEECCCCCHH
T ss_pred hhccCCCCcchH-HHHHHHHHHHHhccc----------ccc-CCceEEEEecCChhhCCHHHHc--ccCeEEEeCCCCHH
Confidence 988765333333 355777888888741 111 4689999999999999999999 99997764 9999
Q ss_pred HHHHHHHHHhhcCC--CCHHHHHHHhhcCCCCccchHHHHHHHHHHHH
Q 019334 228 DILNIVHRMYEKDG--ITKDEVGSIVKTFPNQALDFYGALRSRTYDRS 273 (342)
Q Consensus 228 ~R~~Il~~~~~~~~--~s~~di~~lvd~f~~~~~df~gAlrs~~~~e~ 273 (342)
+|.+||+.+++..+ ++..++..++.... .|.+|....++.++
T Consensus 188 ~r~~il~~~~~~~~~~~~~~~l~~la~~t~----g~sg~di~~l~~~a 231 (322)
T 3eie_A 188 ARTTMFEINVGDTPCVLTKEDYRTLGAMTE----GYSGSDIAVVVKDA 231 (322)
T ss_dssp HHHHHHHHHHTTCCCCCCHHHHHHHHHTTT----TCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCCCCHHHHHHHHHHcC----CCCHHHHHHHHHHH
Confidence 99999999998775 57788888875433 34455444555554
No 15
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.97 E-value=2.7e-31 Score=267.74 Aligned_cols=171 Identities=17% Similarity=0.219 Sum_probs=137.6
Q ss_pred cCCCCCeEEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccccccCCcHHHHHHHHHHHHHhhhhcCCceEEEeeccc
Q 019334 69 LNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDID 148 (342)
Q Consensus 69 ~~~k~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~~~GEsEr~iR~~F~~A~e~~~~~~~PcILfIDEID 148 (342)
.+.++|.+++|+||||||||++|+++|++++++|+.++++++.+.+.|++++.+|.+|..|.. ++||||||||||
T Consensus 44 ~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~~~g~~~~~~r~lf~~A~~-----~~p~ILfIDEid 118 (476)
T 2ce7_A 44 IGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELFVGVGAARVRDLFAQAKA-----HAPCIVFIDEID 118 (476)
T ss_dssp TTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTCCTTHHHHHHHHHHHHHHH-----TCSEEEEEETGG
T ss_pred cCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHHHhcccHHHHHHHHHHHHh-----cCCCEEEEechh
Confidence 467899999999999999999999999999999999999999999999999999999999863 569999999999
Q ss_pred ccCCCCC-CC-cccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCCccCCCCCCCCcceecC--C
Q 019334 149 AGLGRFG-NT-QMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQ--P 224 (342)
Q Consensus 149 Ag~~r~~-~t-~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~~~LdpaLlRpGRfD~~i~v--P 224 (342)
++.++++ +. +.....+.+..+|+..+|+ + ....+|.||+|||+++.|||+|+||||||+.+.+ |
T Consensus 119 ~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~---------~---~~~~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~P 186 (476)
T 2ce7_A 119 AVGRHRGAGLGGGHDEREQTLNQLLVEMDG---------F---DSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPP 186 (476)
T ss_dssp GTCCC---------CHHHHHHHHHHHHHHH---------S---CGGGTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCC
T ss_pred hhhhhcccccCcCcHHHHHHHHHHHHHHhc---------c---CCCCCEEEEEecCChhhhchhhcccCcceeEeecCCC
Confidence 9887664 21 2222334566778877773 1 1135799999999999999999999999997765 9
Q ss_pred CHHHHHHHHHHHhhcCCCC-HHHHHHHhhcCCC
Q 019334 225 NLEDILNIVHRMYEKDGIT-KDEVGSIVKTFPN 256 (342)
Q Consensus 225 ~~~~R~~Il~~~~~~~~~s-~~di~~lvd~f~~ 256 (342)
+.++|.+||+.+++..+++ ..++..+....+|
T Consensus 187 d~~~R~~Il~~~~~~~~l~~~v~l~~la~~t~G 219 (476)
T 2ce7_A 187 DMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPG 219 (476)
T ss_dssp CHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTT
T ss_pred CHHHHHHHHHHHHHhCCCcchhhHHHHHHhcCC
Confidence 9999999999998876654 2345555544443
No 16
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.97 E-value=2.4e-31 Score=255.44 Aligned_cols=187 Identities=18% Similarity=0.237 Sum_probs=144.1
Q ss_pred CCCCCeEEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccccccCCcHHHHHHHHHHHHHhhhhcCCceEEEeecccc
Q 019334 70 NVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDA 149 (342)
Q Consensus 70 ~~k~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~~~GEsEr~iR~~F~~A~e~~~~~~~PcILfIDEIDA 149 (342)
+.++|.+++||||||||||++|+++|++++.+++.++++++.++|.|++++.++.+|..|.. .+||||||||||+
T Consensus 80 ~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~-----~~~~vl~iDEid~ 154 (355)
T 2qp9_X 80 NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARE-----NKPSIIFIDQVDA 154 (355)
T ss_dssp SCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHSCC---CHHHHHHHHHHHHH-----TSSEEEEEECGGG
T ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHhhhhcchHHHHHHHHHHHHHH-----cCCeEEEEechHh
Confidence 35678899999999999999999999999999999999999999999999999999988863 4699999999999
Q ss_pred cCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCCccCCCCCCCCcceecC--CCHH
Q 019334 150 GLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQ--PNLE 227 (342)
Q Consensus 150 g~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~~~LdpaLlRpGRfD~~i~v--P~~~ 227 (342)
+.+.++..+... .+++..+|+..+|+. ... ..+|.||+|||+++.|||+|+| |||+.+++ |+.+
T Consensus 155 l~~~r~~~~~~~-~~~~~~~ll~~l~~~----------~~~-~~~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~ 220 (355)
T 2qp9_X 155 LTGTRGEGESEA-SRRIKTELLVQMNGV----------GND-SQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLA 220 (355)
T ss_dssp GTC------CTH-HHHHHHHHHHHHHHC----------C----CCEEEEEEESCGGGSCHHHHH--TCCEEEECCCCCHH
T ss_pred hcccCCCCcchH-HHHHHHHHHHHhhcc----------ccc-CCCeEEEeecCCcccCCHHHHc--ccCEEEEeCCcCHH
Confidence 988765333333 355777888887741 111 4679999999999999999999 99998775 9999
Q ss_pred HHHHHHHHHhhcCC--CCHHHHHHHhhcCCCCccchHHHHHHHHHHHHHHHHHH
Q 019334 228 DILNIVHRMYEKDG--ITKDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWID 279 (342)
Q Consensus 228 ~R~~Il~~~~~~~~--~s~~di~~lvd~f~~~~~df~gAlrs~~~~e~ir~w~~ 279 (342)
+|.+||+.+++..+ ++..+++.|+.... .|.+|....++.++....++
T Consensus 221 ~r~~il~~~l~~~~~~~~~~~l~~la~~t~----G~sg~dl~~l~~~A~~~a~~ 270 (355)
T 2qp9_X 221 ARTTMFEINVGDTPSVLTKEDYRTLGAMTE----GYSGSDIAVVVKDALMQPIR 270 (355)
T ss_dssp HHHHHHHHHHTTSCBCCCHHHHHHHHHHTT----TCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHcC----CCCHHHHHHHHHHHHHHHHH
Confidence 99999999998775 57778887775433 24566555566665444433
No 17
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.97 E-value=1.8e-30 Score=256.89 Aligned_cols=207 Identities=15% Similarity=0.147 Sum_probs=154.4
Q ss_pred cccccHHHHHHHHHHHHHHHHHhhc------------CCCCCeEEEeecCCCCCHHHHHHHHHHHh-CCceEEeeccccc
Q 019334 45 DYYIAPVFMASLLCHIVKNYIAHLL------------NVKVPLILGIWGGKGQGKSFQTELIFQAM-GIEPVIMSAGELE 111 (342)
Q Consensus 45 ~~y~~~~f~d~l~~hi~K~~l~~~~------------~~k~PlglgL~GPPG~GKTllaravA~~~-g~~~i~vs~~eL~ 111 (342)
..+.+..|-|.++..-+|..+.+.. +..+|.+++||||||||||++|+++|+++ +.+|+.++++++.
T Consensus 126 ~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~ 205 (444)
T 2zan_A 126 IERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLV 205 (444)
T ss_dssp CCCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC---
T ss_pred ccCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHH
Confidence 3455566777777777777766421 24677999999999999999999999999 9999999999999
Q ss_pred ccccCCcHHHHHHHHHHHHHhhhhcCCceEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCC
Q 019334 112 SERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDI 191 (342)
Q Consensus 112 s~~~GEsEr~iR~~F~~A~e~~~~~~~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~ 191 (342)
++|.|++++.++.+|..|.. .+||||||||||++++.++..+... .+++..+|+..+|+. ..+
T Consensus 206 ~~~~g~~~~~~~~~f~~a~~-----~~~~vl~iDEid~l~~~~~~~~~~~-~~~~~~~lL~~l~~~----------~~~- 268 (444)
T 2zan_A 206 SKWLGESEKLVKNLFQLARE-----NKPSIIFIDEIDSLCGSRSENESEA-ARRIKTEFLVQMQGV----------GVD- 268 (444)
T ss_dssp ------CCCTHHHHHHHHHH-----SCSEEEEESCTTTTCCCSSCCCCGG-GHHHHHHHHTTTTCS----------SCC-
T ss_pred hhhcchHHHHHHHHHHHHHH-----cCCeEEEEechHhhccCCCCccccH-HHHHHHHHHHHHhCc----------ccC-
Confidence 99999999999999988863 4699999999999988766333333 356778888888841 011
Q ss_pred CCCccEEEeeCCCCCCccCCCCCCCCcceecC--CCHHHHHHHHHHHhhcCC--CCHHHHHHHhhcCCCCccchHHHHHH
Q 019334 192 TNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQ--PNLEDILNIVHRMYEKDG--ITKDEVGSIVKTFPNQALDFYGALRS 267 (342)
Q Consensus 192 ~~~V~VIatTNr~~~LdpaLlRpGRfD~~i~v--P~~~~R~~Il~~~~~~~~--~s~~di~~lvd~f~~~~~df~gAlrs 267 (342)
..+|.||+|||+|+.|||+|+| |||+.+++ |+.++|.+||+.++...+ ++..++..|+.... .|.||...
T Consensus 269 ~~~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~----G~sgadl~ 342 (444)
T 2zan_A 269 NDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTD----GYSGADIS 342 (444)
T ss_dssp CSSCEEEEEESCGGGSCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTT----TCCHHHHH
T ss_pred CCCEEEEecCCCccccCHHHHh--hcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcC----CCCHHHHH
Confidence 4689999999999999999999 99987765 999999999999998765 57777777775433 34455555
Q ss_pred HHHHHHH
Q 019334 268 RTYDRSI 274 (342)
Q Consensus 268 ~~~~e~i 274 (342)
.++.++.
T Consensus 343 ~l~~~a~ 349 (444)
T 2zan_A 343 IIVRDAL 349 (444)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555554
No 18
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.97 E-value=1.2e-29 Score=231.23 Aligned_cols=171 Identities=18% Similarity=0.261 Sum_probs=136.8
Q ss_pred cCCCCCeEEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccccccCCcHHHHHHHHHHHHHhhhhcCCceEEEeeccc
Q 019334 69 LNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDID 148 (342)
Q Consensus 69 ~~~k~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~~~GEsEr~iR~~F~~A~e~~~~~~~PcILfIDEID 148 (342)
.+.+.|.+++||||||||||++|+++|++++.+++.++++++.+.+.|++++.++..|..|.. .+||||||||||
T Consensus 46 ~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~vl~iDEid 120 (285)
T 3h4m_A 46 VGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKKFIGEGASLVKDIFKLAKE-----KAPSIIFIDEID 120 (285)
T ss_dssp HCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCCCSTTHHHHHHHHHHHHHHH-----TCSEEEEEETTH
T ss_pred cCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHHhccchHHHHHHHHHHHHHH-----cCCeEEEEECHH
Confidence 467889999999999999999999999999999999999999999999999999999988863 469999999999
Q ss_pred ccCCCCCCCc--ccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCCccCCCCCCCCcceecC--C
Q 019334 149 AGLGRFGNTQ--MTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQ--P 224 (342)
Q Consensus 149 Ag~~r~~~t~--~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~~~LdpaLlRpGRfD~~i~v--P 224 (342)
..++++.+.. .....+.....+++.+++ .....++.||+|||+++.||++++|+|||++.+.+ |
T Consensus 121 ~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~------------~~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p 188 (285)
T 3h4m_A 121 AIAAKRTDALTGGDREVQRTLMQLLAEMDG------------FDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAP 188 (285)
T ss_dssp HHHBCCSSSCCGGGGHHHHHHHHHHHHHHT------------TCSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCC
T ss_pred HhcccCccccCCccHHHHHHHHHHHHHhhC------------CCCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCC
Confidence 9887655222 222223444455555442 11145799999999999999999999999997765 9
Q ss_pred CHHHHHHHHHHHhhcCCC----CHHHHHHHhhcCCC
Q 019334 225 NLEDILNIVHRMYEKDGI----TKDEVGSIVKTFPN 256 (342)
Q Consensus 225 ~~~~R~~Il~~~~~~~~~----s~~di~~lvd~f~~ 256 (342)
+.++|.+|++.+++...+ +..++...+.+|++
T Consensus 189 ~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~ 224 (285)
T 3h4m_A 189 DEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVG 224 (285)
T ss_dssp CHHHHHHHHHHHHTTSCBCTTCCHHHHHHHCTTCCH
T ss_pred CHHHHHHHHHHHHhcCCCCCcCCHHHHHHHcCCCCH
Confidence 999999999998876543 34555555554433
No 19
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.97 E-value=6.2e-30 Score=231.24 Aligned_cols=170 Identities=16% Similarity=0.223 Sum_probs=135.3
Q ss_pred CCCCCeEEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccccccCCcHHHHHHHHHHHHHhhhhcCCceEEEeecccc
Q 019334 70 NVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDA 149 (342)
Q Consensus 70 ~~k~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~~~GEsEr~iR~~F~~A~e~~~~~~~PcILfIDEIDA 149 (342)
+.++|.+++|+||||||||++|+++|++++.+++.++++++.+.+.|++++.++.+|..|. ...||+|||||||+
T Consensus 41 ~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~a~-----~~~~~il~iDeid~ 115 (257)
T 1lv7_A 41 GGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAK-----KAAPCIIFIDEIDA 115 (257)
T ss_dssp --CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTTSCCCCCHHHHHHHHHHHH-----TTCSEEEEETTHHH
T ss_pred CCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHHHhhhhhHHHHHHHHHHHH-----HcCCeeehhhhhhh
Confidence 4578999999999999999999999999999999999999999999999999999998885 35699999999999
Q ss_pred cCCCCC-CCcc-cchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCCccCCCCCCCCcceec--CCC
Q 019334 150 GLGRFG-NTQM-TVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYW--QPN 225 (342)
Q Consensus 150 g~~r~~-~t~~-~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~~~LdpaLlRpGRfD~~i~--vP~ 225 (342)
..+.+. ..+. ....+.+..++++.+|+ . ....++.||+|||+++.|||+++|+||||+.+. .|+
T Consensus 116 l~~~~~~~~~~~~~~~~~~~~~ll~~l~~---------~---~~~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~ 183 (257)
T 1lv7_A 116 VGRQRGAGLGGGHDEREQTLNQMLVEMDG---------F---EGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPD 183 (257)
T ss_dssp HTCCCSTTSCCTTCHHHHHHHHHHHHHHT---------C---CSSSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCC
T ss_pred hccCCCCCcCCCchHHHHHHHHHHHHhhC---------c---ccCCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCC
Confidence 876554 2111 11223456677777663 1 114679999999999999999999999999776 499
Q ss_pred HHHHHHHHHHHhhcCCCCH-HHHHHHhhcCCC
Q 019334 226 LEDILNIVHRMYEKDGITK-DEVGSIVKTFPN 256 (342)
Q Consensus 226 ~~~R~~Il~~~~~~~~~s~-~di~~lvd~f~~ 256 (342)
.++|.+|++.+++..+++. .++..+....+|
T Consensus 184 ~~~r~~il~~~~~~~~l~~~~~~~~la~~~~G 215 (257)
T 1lv7_A 184 VRGREQILKVHMRRVPLAPDIDAAIIARGTPG 215 (257)
T ss_dssp HHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTT
T ss_pred HHHHHHHHHHHHhcCCCCccccHHHHHHHcCC
Confidence 9999999999888766543 334444444443
No 20
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.96 E-value=2.7e-30 Score=231.26 Aligned_cols=158 Identities=19% Similarity=0.272 Sum_probs=122.6
Q ss_pred cCCCCCeEEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccccccCCcHHHHHHHHHHHHHhhhhcCCceEEEeeccc
Q 019334 69 LNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDID 148 (342)
Q Consensus 69 ~~~k~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~~~GEsEr~iR~~F~~A~e~~~~~~~PcILfIDEID 148 (342)
.+.+.|.+++||||||||||++|+++|++++.+++.++++++.+.+.|++++.++..|..|.. .+||||||||||
T Consensus 34 ~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~-----~~~~vl~iDeid 108 (262)
T 2qz4_A 34 LGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIGGLGAARVRSLFKEARA-----RAPCIVYIDEID 108 (262)
T ss_dssp --CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSSTTHHHHHHHHHHHHHHH-----TCSEEEEEECC-
T ss_pred cCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhccChhHHHHHHHHHHHHh-----cCCeEEEEeCcc
Confidence 356889999999999999999999999999999999999999999999999999999998863 469999999999
Q ss_pred ccCCCCCCCcc---cchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCCccCCCCCCCCcceecC--
Q 019334 149 AGLGRFGNTQM---TVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQ-- 223 (342)
Q Consensus 149 Ag~~r~~~t~~---~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~~~LdpaLlRpGRfD~~i~v-- 223 (342)
...++++.... ....+.....|++.+++ .....++.||+|||+++.||++|+|+||||+.+++
T Consensus 109 ~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~------------~~~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~ 176 (262)
T 2qz4_A 109 AVGKKRSTTMSGFSNTEEEQTLNQLLVEMDG------------MGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDL 176 (262)
T ss_dssp ------------------CHHHHHHHHHHHT------------CCTTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCS
T ss_pred hhhccccccccCccchhHHHHHHHHHHHhhC------------cCCCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCC
Confidence 98876542211 11123345567766663 11145899999999999999999999999998774
Q ss_pred CCHHHHHHHHHHHhhcCCCC
Q 019334 224 PNLEDILNIVHRMYEKDGIT 243 (342)
Q Consensus 224 P~~~~R~~Il~~~~~~~~~s 243 (342)
|+.++|.+|++.+++..++.
T Consensus 177 p~~~~r~~il~~~~~~~~~~ 196 (262)
T 2qz4_A 177 PTLQERREIFEQHLKSLKLT 196 (262)
T ss_dssp CCHHHHHHHHHHHHHHTTCC
T ss_pred cCHHHHHHHHHHHHHhCCCC
Confidence 99999999999988876654
No 21
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.96 E-value=1.1e-29 Score=255.95 Aligned_cols=189 Identities=19% Similarity=0.248 Sum_probs=151.2
Q ss_pred cCCCCCeEEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccccccCCcHHHHHHHHHHHHHhhhhcCCceEEEeeccc
Q 019334 69 LNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDID 148 (342)
Q Consensus 69 ~~~k~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~~~GEsEr~iR~~F~~A~e~~~~~~~PcILfIDEID 148 (342)
.+.++|.+++||||||||||++|+++|++++.+|+.++++++.++|.|+++..++.+|..|. .++||||||||||
T Consensus 233 ~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~~g~~~~~~~~~f~~A~-----~~~p~iLfLDEId 307 (489)
T 3hu3_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAE-----KNAPAIIFIDELD 307 (489)
T ss_dssp HTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSCTTHHHHHHHHHHHHHH-----HTCSEEEEEESHH
T ss_pred cCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhhcchhHHHHHHHHHHHH-----hcCCcEEEecchh
Confidence 46789999999999999999999999999999999999999999999999999999999886 4579999999999
Q ss_pred ccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCCccCCCCCCCCcceecC--CCH
Q 019334 149 AGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQ--PNL 226 (342)
Q Consensus 149 Ag~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~~~LdpaLlRpGRfD~~i~v--P~~ 226 (342)
+++++++..++.. .+.++.+|+.++|+ .....+|.||+|||+++.||++|+|+|||++.+++ |+.
T Consensus 308 ~l~~~~~~~~~~~-~~~~~~~LL~~ld~------------~~~~~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~ 374 (489)
T 3hu3_A 308 AIAPKREKTHGEV-ERRIVSQLLTLMDG------------LKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDA 374 (489)
T ss_dssp HHCBCTTSCCCHH-HHHHHHHHHHHHHH------------SCTTSCEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCH
T ss_pred hhccccccccchH-HHHHHHHHHHHhhc------------cccCCceEEEEecCCccccCHHHhCCCcCceEEEeCCCCH
Confidence 9998776444433 35677889988883 11145799999999999999999999999997764 999
Q ss_pred HHHHHHHHHHhhcCCCC-HHHHHHHhhcCCCCccchHHHHHHHHHHHHHHHHHH
Q 019334 227 EDILNIVHRMYEKDGIT-KDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWID 279 (342)
Q Consensus 227 ~~R~~Il~~~~~~~~~s-~~di~~lvd~f~~~~~df~gAlrs~~~~e~ir~w~~ 279 (342)
++|.+||+.+++...+. ..++..+.... ..|.++....++.++....+.
T Consensus 375 ~eR~~IL~~~~~~~~l~~~~~l~~la~~t----~g~s~~dL~~L~~~A~~~a~r 424 (489)
T 3hu3_A 375 TGRLEILQIHTKNMKLADDVDLEQVANET----HGHVGADLAALCSEAALQAIR 424 (489)
T ss_dssp HHHHHHHHHHTTTSCBCTTCCHHHHHHTC----TTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCcchhhHHHHHHHc----cCCcHHHHHHHHHHHHHHHHH
Confidence 99999999998876643 23445554322 234455445555555444443
No 22
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.96 E-value=3.2e-29 Score=253.90 Aligned_cols=171 Identities=16% Similarity=0.220 Sum_probs=137.2
Q ss_pred cCCCCCeEEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccccccCCcHHHHHHHHHHHHHhhhhcCCceEEEeeccc
Q 019334 69 LNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDID 148 (342)
Q Consensus 69 ~~~k~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~~~GEsEr~iR~~F~~A~e~~~~~~~PcILfIDEID 148 (342)
.+.++|.+++|+||||||||++|+++|++++.+++.++++++.+.+.|+.++.++.+|..|. ...||||||||||
T Consensus 59 lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~-----~~~p~il~IDEId 133 (499)
T 2dhr_A 59 MGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAK-----RHAPCIVFIDEID 133 (499)
T ss_dssp TSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSCTTHHHHHHHHHTTTSS-----SSSSCEEEEECGG
T ss_pred ccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhhhhhHHHHHHHHHHHHH-----hcCCCEEEEehHH
Confidence 35788999999999999999999999999999999999999999999999999999998774 3469999999999
Q ss_pred ccCCCCCC-Cc-ccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCCccCCCCCCCCcceecC--C
Q 019334 149 AGLGRFGN-TQ-MTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQ--P 224 (342)
Q Consensus 149 Ag~~r~~~-t~-~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~~~LdpaLlRpGRfD~~i~v--P 224 (342)
++.++++. .+ .....+.+..+|++.||+ ......+.||+|||+|+.|||+|+||||||+.+.+ |
T Consensus 134 ~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg------------~~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~P 201 (499)
T 2dhr_A 134 AVGRKRGSGVGGGNDEREQTLNQLLVEMDG------------FEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAP 201 (499)
T ss_dssp GTCCCSSSSTTTSSHHHHHHHHHHHHHGGG------------CCSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCC
T ss_pred HHHHhhccCcCCCcHHHHHHHHHHHHHhcc------------cccCccEEEEEecCChhhcCcccccccccceEEecCCC
Confidence 98765542 11 111223455677777773 11246789999999999999999999999998875 9
Q ss_pred CHHHHHHHHHHHhhcCCCC-HHHHHHHhhcCCC
Q 019334 225 NLEDILNIVHRMYEKDGIT-KDEVGSIVKTFPN 256 (342)
Q Consensus 225 ~~~~R~~Il~~~~~~~~~s-~~di~~lvd~f~~ 256 (342)
+.++|.+||+.+++...++ ..++..+....+|
T Consensus 202 d~~~R~~IL~~~~~~~~l~~dv~l~~lA~~t~G 234 (499)
T 2dhr_A 202 DVKGREQILRIHARGKPLAEDVDLALLAKRTPG 234 (499)
T ss_dssp CHHHHHHHHHHTTSSSCCCCSSTTHHHHTTSCS
T ss_pred CHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCC
Confidence 9999999999988766654 3445555544444
No 23
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.96 E-value=1e-30 Score=276.72 Aligned_cols=156 Identities=18% Similarity=0.235 Sum_probs=131.0
Q ss_pred CCCCCeEEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccccccCCcHHHHHHHHHHHHHhhhhcCCceEEEeecccc
Q 019334 70 NVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDA 149 (342)
Q Consensus 70 ~~k~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~~~GEsEr~iR~~F~~A~e~~~~~~~PcILfIDEIDA 149 (342)
++.++.+++|+||||||||++|+++|++++.+++.++++++.++|+|++++.++.+|+.|... .||||||||||+
T Consensus 507 ~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~-----~p~vl~iDEid~ 581 (806)
T 1ypw_A 507 GMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQA-----APCVLFFDELDS 581 (806)
T ss_dssp CCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTTCCTTTSSHHHHHHHHHHHHH-----CSBCCCCSSHHH
T ss_pred CCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhhhhhcCccHHHHHHHHHHHHhc-----CCeEEEEEChhh
Confidence 456778999999999999999999999999999999999999999999999999999999754 499999999999
Q ss_pred cCCCCCCCcc--cchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCCccCCCCCCCCcceecC--CC
Q 019334 150 GLGRFGNTQM--TVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQ--PN 225 (342)
Q Consensus 150 g~~r~~~t~~--~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~~~LdpaLlRpGRfD~~i~v--P~ 225 (342)
+++.+++... ....+++..+|++.||+. ....+|+||+|||+++.|||||+||||||+.+++ |+
T Consensus 582 l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~------------~~~~~v~vI~tTN~~~~ld~allrpgRf~~~i~~~~p~ 649 (806)
T 1ypw_A 582 IAKARGGNIGDGGGAADRVINQILTEMDGM------------STKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPD 649 (806)
T ss_dssp HCCTTTTCCSHHHHHHHHHHHHHHTTCC------------------CCBCCCCCBSCGGGSCTTSSGGGTTSCCCCCCCC
T ss_pred hhhhccCCCCCcchhHHHHHHHHHHHHhcc------------cccCCeEEEEecCCcccCCHHHhCccccCceeecCCCC
Confidence 9876653221 123456788999888851 1146899999999999999999999999998775 89
Q ss_pred HHHHHHHHHHHhhcCCC
Q 019334 226 LEDILNIVHRMYEKDGI 242 (342)
Q Consensus 226 ~~~R~~Il~~~~~~~~~ 242 (342)
.++|.+||+.+++..++
T Consensus 650 ~~~r~~Il~~~l~~~~~ 666 (806)
T 1ypw_A 650 EKSRVAILKANLRKSPV 666 (806)
T ss_dssp CSHHHHHTTTTTSCC--
T ss_pred HHHHHHHHHHHhccCCC
Confidence 99999999998876543
No 24
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.96 E-value=1e-27 Score=216.41 Aligned_cols=171 Identities=16% Similarity=0.220 Sum_probs=133.4
Q ss_pred cCCCCCeEEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccccccCCcHHHHHHHHHHHHHhhhhcCCceEEEeeccc
Q 019334 69 LNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDID 148 (342)
Q Consensus 69 ~~~k~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~~~GEsEr~iR~~F~~A~e~~~~~~~PcILfIDEID 148 (342)
.+.++|.|++|+||||||||++++++|+.++.+++.+++.++.+.+.|+.++.++.+|..|.. ..||++||||||
T Consensus 44 ~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----~~~~i~~~Deid 118 (254)
T 1ixz_A 44 MGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKR-----HAPCIVFIDEID 118 (254)
T ss_dssp TTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTT-----SSSEEEEEETHH
T ss_pred cCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHh-----cCCeEEEehhhh
Confidence 467889999999999999999999999999999999999999999999999999999988752 359999999999
Q ss_pred ccCCCCCC-C-cccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCCccCCCCCCCCcceecC--C
Q 019334 149 AGLGRFGN-T-QMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQ--P 224 (342)
Q Consensus 149 Ag~~r~~~-t-~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~~~LdpaLlRpGRfD~~i~v--P 224 (342)
+...+++. . ......+.+...+++.+++ + +. ...+.++++||+|+.|||+|+|+||||+.+.+ |
T Consensus 119 ~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g-------~----~~-~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p 186 (254)
T 1ixz_A 119 AVGRKRGSGVGGGNDEREQTLNQLLVEMDG-------F----EK-DTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAP 186 (254)
T ss_dssp HHHC---------CHHHHHHHHHHHHHHHT-------C----CT-TCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSC
T ss_pred hhhcccCccccccchHHHHHHHHHHHHHhC-------C----CC-CCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCc
Confidence 97655431 1 1111223455677776663 1 11 45688999999999999999999999998775 9
Q ss_pred CHHHHHHHHHHHhhcCCCC-HHHHHHHhhcCCC
Q 019334 225 NLEDILNIVHRMYEKDGIT-KDEVGSIVKTFPN 256 (342)
Q Consensus 225 ~~~~R~~Il~~~~~~~~~s-~~di~~lvd~f~~ 256 (342)
+.++|.+||+.+.+...++ ..++..++...+|
T Consensus 187 ~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G 219 (254)
T 1ixz_A 187 DVKGREQILRIHARGKPLAEDVDLALLAKRTPG 219 (254)
T ss_dssp CHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTT
T ss_pred CHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCC
Confidence 9999999999888766554 3345555554443
No 25
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.95 E-value=6.3e-28 Score=231.23 Aligned_cols=181 Identities=22% Similarity=0.293 Sum_probs=142.4
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccccccCCcHHHHHHHHHHHHHhhhhcCCceEEEeecccccC
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGL 151 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~~~GEsEr~iR~~F~~A~e~~~~~~~PcILfIDEIDAg~ 151 (342)
+.|.+++||||||||||++|+++|++++.+++.++++++.++|.|++++.++.+|..|.. .+||||||||||+++
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~~~g~~~~~~~~~~~~a~~-----~~~~vl~iDEid~l~ 189 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVARC-----QQPAVIFIDEIDSLL 189 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCCSSTTHHHHHHHHHHHHHHH-----TCSEEEEEETHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhccccchHHHHHHHHHHHHHh-----cCCeEEEEeCchhhh
Confidence 678999999999999999999999999999999999999999999999999999988863 469999999999998
Q ss_pred CCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCCccCCCCCCCCcceecC--CCHHHH
Q 019334 152 GRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQ--PNLEDI 229 (342)
Q Consensus 152 ~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~~~LdpaLlRpGRfD~~i~v--P~~~~R 229 (342)
+.++..... ..+++...|+..+++- .. ....+|.||+|||+++.||++|+| ||++.+++ |+.++|
T Consensus 190 ~~~~~~~~~-~~~~~~~~lL~~l~~~---------~~-~~~~~v~vI~atn~~~~l~~~l~~--Rf~~~i~i~~p~~~~r 256 (357)
T 3d8b_A 190 SQRGDGEHE-SSRRIKTEFLVQLDGA---------TT-SSEDRILVVGATNRPQEIDEAARR--RLVKRLYIPLPEASAR 256 (357)
T ss_dssp BC------C-HHHHHHHHHHHHHHC--------------CCCCEEEEEEESCGGGBCHHHHT--TCCEEEECCCCCHHHH
T ss_pred ccCCCCcch-HHHHHHHHHHHHHhcc---------cc-cCCCCEEEEEecCChhhCCHHHHh--hCceEEEeCCcCHHHH
Confidence 765422222 3455777888877741 11 114679999999999999999999 99987664 999999
Q ss_pred HHHHHHHhhcCC--CCHHHHHHHhhcCCCCccchHHHHHHHHHHHHH
Q 019334 230 LNIVHRMYEKDG--ITKDEVGSIVKTFPNQALDFYGALRSRTYDRSI 274 (342)
Q Consensus 230 ~~Il~~~~~~~~--~s~~di~~lvd~f~~~~~df~gAlrs~~~~e~i 274 (342)
.+|++.+++..+ ++.+++..++....| |.++....++.++.
T Consensus 257 ~~il~~~~~~~~~~l~~~~l~~la~~t~G----~s~~dl~~l~~~a~ 299 (357)
T 3d8b_A 257 KQIVINLMSKEQCCLSEEEIEQIVQQSDA----FSGADMTQLCREAS 299 (357)
T ss_dssp HHHHHHHHHTSCBCCCHHHHHHHHHHTTT----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCCCccHHHHHHHHHHcCC----CCHHHHHHHHHHHH
Confidence 999999887654 677788777754432 34554455555553
No 26
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.95 E-value=1.7e-29 Score=228.72 Aligned_cols=158 Identities=16% Similarity=0.200 Sum_probs=126.1
Q ss_pred cCCCCCeEEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccccccCCcHHHHHHHHHHHHHhhhhcCCceEEEeeccc
Q 019334 69 LNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDID 148 (342)
Q Consensus 69 ~~~k~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~~~GEsEr~iR~~F~~A~e~~~~~~~PcILfIDEID 148 (342)
.+.+.|.+++||||||||||++|+++|++++.+++.++++++.+.+.|++++.++..|+.|.. .+||||||||||
T Consensus 39 ~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~a~~-----~~~~vl~iDEid 113 (268)
T 2r62_A 39 LGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMFVGLGASRVRDLFETAKK-----QAPSIIFIDEID 113 (268)
T ss_dssp HSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTTSCSSSCSSSSSTTHHHHHH-----SCSCEEEESCGG
T ss_pred CCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHHhhcchHHHHHHHHHHHHHh-----cCCeEEEEeChh
Confidence 467889999999999999999999999999999999999999999999999999999988863 469999999999
Q ss_pred ccCCCCCCC---cccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCCccCCCCCCCCcceecC--
Q 019334 149 AGLGRFGNT---QMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQ-- 223 (342)
Q Consensus 149 Ag~~r~~~t---~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~~~LdpaLlRpGRfD~~i~v-- 223 (342)
.+.+.+... +.+...+.+...|++.+++. . ....+|.||+|||+++.||++++|+|||+..+.+
T Consensus 114 ~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~---------~--~~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~ 182 (268)
T 2r62_A 114 AIGKSRAAGGVVSGNDEREQTLNQLLAEMDGF---------G--SENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDK 182 (268)
T ss_dssp GTTC----------CCCSCSSTTTTTTTTTCS---------S--CSCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCC
T ss_pred hhcccccccccCCCchhHHHHHHHHHHHhhCc---------c--cCCCCEEEEEecCCchhcCHhHcCCCCCCeEEEecC
Confidence 988754211 01111122344566666631 0 1135699999999999999999999999987764
Q ss_pred CCHHHHHHHHHHHhhcCCC
Q 019334 224 PNLEDILNIVHRMYEKDGI 242 (342)
Q Consensus 224 P~~~~R~~Il~~~~~~~~~ 242 (342)
|+.++|.+|++.+++...+
T Consensus 183 p~~~~r~~il~~~~~~~~~ 201 (268)
T 2r62_A 183 PDFNGRVEILKVHIKGVKL 201 (268)
T ss_dssp CCTTTHHHHHHHHTSSSCC
T ss_pred cCHHHHHHHHHHHHhcCCC
Confidence 9999999999988876544
No 27
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.95 E-value=3.8e-28 Score=222.95 Aligned_cols=182 Identities=17% Similarity=0.245 Sum_probs=138.8
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccccccCCcHHHHHHHHHHHHHhhhhcCCceEEEeecccccC
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGL 151 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~~~GEsEr~iR~~F~~A~e~~~~~~~PcILfIDEIDAg~ 151 (342)
.+|.+++||||||||||++|+++|++++.+++.++++++.+++.|++++.++.+|..|.. .+||||||||||++.
T Consensus 52 ~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~vl~iDEid~l~ 126 (297)
T 3b9p_A 52 APAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARH-----MQPSIIFIDEVDSLL 126 (297)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSSSSCSCHHHHHHHHHHHHHH-----TCSEEEEEETGGGTS
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHhhcccchHHHHHHHHHHHHHH-----cCCcEEEeccHHHhc
Confidence 467899999999999999999999999999999999999999999999999999988863 469999999999998
Q ss_pred CCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCCccCCCCCCCCcceecC--CCHHHH
Q 019334 152 GRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQ--PNLEDI 229 (342)
Q Consensus 152 ~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~~~LdpaLlRpGRfD~~i~v--P~~~~R 229 (342)
+.+....... .+.+...|+..+|++. ......+|.||+|||+++.||++++| ||++.+++ |+.++|
T Consensus 127 ~~~~~~~~~~-~~~~~~~ll~~l~~~~---------~~~~~~~v~vi~~tn~~~~l~~~l~~--R~~~~i~~~~p~~~~r 194 (297)
T 3b9p_A 127 SERSSSEHEA-SRRLKTEFLVEFDGLP---------GNPDGDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPDEQTR 194 (297)
T ss_dssp BCC-----CC-SHHHHHHHHHHHHHCC---------------CEEEEEEESCGGGBCHHHHH--HCCEEEECCCCCHHHH
T ss_pred cccccCcchH-HHHHHHHHHHHHhccc---------ccCCCCcEEEEeecCChhhCCHHHHh--hCCeEEEeCCcCHHHH
Confidence 7655322222 2345667777777421 11113579999999999999999999 99987764 999999
Q ss_pred HHHHHHHhhcCC--CCHHHHHHHhhcCCCCccchHHHHHHHHHHHHH
Q 019334 230 LNIVHRMYEKDG--ITKDEVGSIVKTFPNQALDFYGALRSRTYDRSI 274 (342)
Q Consensus 230 ~~Il~~~~~~~~--~s~~di~~lvd~f~~~~~df~gAlrs~~~~e~i 274 (342)
..|++.+++..+ ++.+++..++.... .|.++....++.++.
T Consensus 195 ~~il~~~~~~~~~~~~~~~~~~la~~~~----g~~~~~l~~l~~~a~ 237 (297)
T 3b9p_A 195 ELLLNRLLQKQGSPLDTEALRRLAKITD----GYSGSDLTALAKDAA 237 (297)
T ss_dssp HHHHHHHHGGGSCCSCHHHHHHHHHHTT----TCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHcC----CCCHHHHHHHHHHHH
Confidence 999998887654 67777777765433 234444444455443
No 28
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.95 E-value=2.7e-27 Score=228.21 Aligned_cols=206 Identities=18% Similarity=0.203 Sum_probs=144.2
Q ss_pred ccccHHHHHHHHHHHHHHHHHhhc------------CCCCCeEEEeecCCCCCHHHHHHHHHHHhCCceEEeeccccccc
Q 019334 46 YYIAPVFMASLLCHIVKNYIAHLL------------NVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESE 113 (342)
Q Consensus 46 ~y~~~~f~d~l~~hi~K~~l~~~~------------~~k~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~ 113 (342)
.|.+..|-|.++..-++..+.+.. ...++.+++||||||||||++|+++|.+++.+|+.++++++.+.
T Consensus 108 ~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~ 187 (389)
T 3vfd_A 108 NGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSK 187 (389)
T ss_dssp CSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC---
T ss_pred cCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHhhcc
Confidence 445556777666665555554421 11457899999999999999999999999999999999999999
Q ss_pred ccCCcHHHHHHHHHHHHHhhhhcCCceEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCC
Q 019334 114 RAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITN 193 (342)
Q Consensus 114 ~~GEsEr~iR~~F~~A~e~~~~~~~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~ 193 (342)
|.|++++.++.+|..|.. .+||||||||||.+++.+....... ..++...|+..+++ .... ...
T Consensus 188 ~~g~~~~~~~~~~~~a~~-----~~~~il~iDEid~l~~~~~~~~~~~-~~~~~~~ll~~l~~---------~~~~-~~~ 251 (389)
T 3vfd_A 188 YVGEGEKLVRALFAVARE-----LQPSIIFIDQVDSLLCERREGEHDA-SRRLKTEFLIEFDG---------VQSA-GDD 251 (389)
T ss_dssp ----CHHHHHHHHHHHHH-----SSSEEEEEETGGGGC--------CT-HHHHHHHHHHHHHH---------HC------
T ss_pred ccchHHHHHHHHHHHHHh-----cCCeEEEEECchhhcccCCCccchH-HHHHHHHHHHHhhc---------cccc-CCC
Confidence 999999999999998874 4699999999999887654222222 34566778877773 1111 145
Q ss_pred CccEEEeeCCCCCCccCCCCCCCCcceecC--CCHHHHHHHHHHHhhcCC--CCHHHHHHHhhcCCCCccchHHHHHHHH
Q 019334 194 RIPIIFTGNDFSTIYAPLIRDGRMEKFYWQ--PNLEDILNIVHRMYEKDG--ITKDEVGSIVKTFPNQALDFYGALRSRT 269 (342)
Q Consensus 194 ~V~VIatTNr~~~LdpaLlRpGRfD~~i~v--P~~~~R~~Il~~~~~~~~--~s~~di~~lvd~f~~~~~df~gAlrs~~ 269 (342)
+|.||+|||+++.||++|+| ||+..+++ |+.++|.+|++.++...+ ++.+++..++....| +.++....+
T Consensus 252 ~v~vI~atn~~~~l~~~l~~--R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g----~~~~~l~~L 325 (389)
T 3vfd_A 252 RVLVMGATNRPQELDEAVLR--RFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDG----YSGSDLTAL 325 (389)
T ss_dssp CEEEEEEESCGGGCCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTT----CCHHHHHHH
T ss_pred CEEEEEecCCchhcCHHHHc--CcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCC----CCHHHHHHH
Confidence 79999999999999999999 99986664 999999999998887654 677788877754433 334433444
Q ss_pred HHHH
Q 019334 270 YDRS 273 (342)
Q Consensus 270 ~~e~ 273 (342)
+..+
T Consensus 326 ~~~a 329 (389)
T 3vfd_A 326 AKDA 329 (389)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4444
No 29
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.94 E-value=3.5e-26 Score=210.09 Aligned_cols=171 Identities=16% Similarity=0.222 Sum_probs=133.6
Q ss_pred cCCCCCeEEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccccccCCcHHHHHHHHHHHHHhhhhcCCceEEEeeccc
Q 019334 69 LNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDID 148 (342)
Q Consensus 69 ~~~k~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~~~GEsEr~iR~~F~~A~e~~~~~~~PcILfIDEID 148 (342)
.+.++|.+++|+||||||||++++++|+.++.+++.+++.++.+.+.|+.++.++.+|..+.. ..||++||||||
T Consensus 68 ~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----~~~~i~~iDeid 142 (278)
T 1iy2_A 68 MGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKR-----HAPCIVFIDEID 142 (278)
T ss_dssp TTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHT-----SCSEEEEEETHH
T ss_pred cCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHHHHhhHHHHHHHHHHHHHHh-----cCCcEEehhhhH
Confidence 467889999999999999999999999999999999999999999999999999999988753 359999999999
Q ss_pred ccCCCCCC-C-cccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCCccCCCCCCCCcceecC--C
Q 019334 149 AGLGRFGN-T-QMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQ--P 224 (342)
Q Consensus 149 Ag~~r~~~-t-~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~~~LdpaLlRpGRfD~~i~v--P 224 (342)
+...++.. . ......+.....+++.+++ + +. ...+.++++||+|+.|||+|+|+||||+.+.+ |
T Consensus 143 ~l~~~~~~~~~~~~~~~~~~~~~ll~~lsg-------g----~~-~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p 210 (278)
T 1iy2_A 143 AVGRKRGSGVGGGNDEREQTLNQLLVEMDG-------F----EK-DTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAP 210 (278)
T ss_dssp HHHCC--------CHHHHHHHHHHHHHHTT-------C----CT-TCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCC
T ss_pred hhhcccccccCCcchHHHHHHHHHHHHHhC-------C----CC-CCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCc
Confidence 97654431 1 1111223445567766663 1 11 45688999999999999999999999998775 9
Q ss_pred CHHHHHHHHHHHhhcCCCCH-HHHHHHhhcCCC
Q 019334 225 NLEDILNIVHRMYEKDGITK-DEVGSIVKTFPN 256 (342)
Q Consensus 225 ~~~~R~~Il~~~~~~~~~s~-~di~~lvd~f~~ 256 (342)
+.++|.+||+.+.+...++. .++..+....+|
T Consensus 211 ~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G 243 (278)
T 1iy2_A 211 DVKGREQILRIHARGKPLAEDVDLALLAKRTPG 243 (278)
T ss_dssp CHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTT
T ss_pred CHHHHHHHHHHHHccCCCCcccCHHHHHHHcCC
Confidence 99999999998887665543 345555554444
No 30
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.93 E-value=1.6e-25 Score=237.14 Aligned_cols=166 Identities=20% Similarity=0.283 Sum_probs=139.8
Q ss_pred cCCCCCeEEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccccccCCcHHHHHHHHHHHHHhhhhcCCceEEEeeccc
Q 019334 69 LNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDID 148 (342)
Q Consensus 69 ~~~k~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~~~GEsEr~iR~~F~~A~e~~~~~~~PcILfIDEID 148 (342)
+++++|.+++|+||||||||++|+++|++++.+++.++++++.+++.|++++.++.+|..|... .||+|||||||
T Consensus 233 l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~-----~p~il~iDEid 307 (806)
T 1ypw_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN-----APAIIFIDELD 307 (806)
T ss_dssp SCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSSSSTTHHHHHHHHHHHHHHHH-----CSEEEEEESGG
T ss_pred cCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhhhhhhhHHHHHHHHHHHHHhc-----CCcEEEeccHH
Confidence 4788999999999999999999999999999999999999999999999999999999998643 59999999999
Q ss_pred ccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCCccCCCCCCCCcceec--CCCH
Q 019334 149 AGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYW--QPNL 226 (342)
Q Consensus 149 Ag~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~~~LdpaLlRpGRfD~~i~--vP~~ 226 (342)
.+++.++..+... .+++..+|++++++ .....+|.||+|||+++.|||+|+|+||||+.+. +|+.
T Consensus 308 ~l~~~~~~~~~~~-~~~~~~~Ll~ll~g------------~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~ 374 (806)
T 1ypw_A 308 AIAPKREKTHGEV-ERRIVSQLLTLMDG------------LKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDA 374 (806)
T ss_dssp GTSCTTSCCCSHH-HHHHHHHHHHHHHS------------SCTTSCCEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCH
T ss_pred HhhhccccccchH-HHHHHHHHHHHhhh------------hcccccEEEecccCCchhcCHHHhcccccccccccCCCCH
Confidence 9998776444333 35677889988884 1114679999999999999999999999999776 4999
Q ss_pred HHHHHHHHHHhhcCCCC-HHHHHHHhh
Q 019334 227 EDILNIVHRMYEKDGIT-KDEVGSIVK 252 (342)
Q Consensus 227 ~~R~~Il~~~~~~~~~s-~~di~~lvd 252 (342)
++|.+||+.+.....+. ..++.++..
T Consensus 375 ~~r~~il~~~~~~~~l~~~~~l~~la~ 401 (806)
T 1ypw_A 375 TGRLEILQIHTKNMKLADDVDLEQVAN 401 (806)
T ss_dssp HHHHHHHHHTTTTSCCCTTCCTHHHHH
T ss_pred HHHHHHHHHHHhcCCCcccchhHHHHH
Confidence 99999999888766543 234444443
No 31
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.93 E-value=3.7e-28 Score=240.12 Aligned_cols=156 Identities=12% Similarity=0.064 Sum_probs=112.2
Q ss_pred cCCCCCeEEEeecCCCCCHHHHHHHHHHHhC--CceEEeecccccccccCCcHHHHHHHHHHHHHhhhhcCCceEEEeec
Q 019334 69 LNVKVPLILGIWGGKGQGKSFQTELIFQAMG--IEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMIND 146 (342)
Q Consensus 69 ~~~k~PlglgL~GPPG~GKTllaravA~~~g--~~~i~vs~~eL~s~~~GEsEr~iR~~F~~A~e~~~~~~~PcILfIDE 146 (342)
.+..+|.+++||||||||||++|+++|++++ ++|+.+++++++++|+|++|+ +++.|+.|... ...+||||||||
T Consensus 58 ~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~f~~a~~~--~~~~~~il~iDE 134 (456)
T 2c9o_A 58 SKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTEV-LMENFRRAIGL--RIKETKEVYEGE 134 (456)
T ss_dssp TTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCCSSSCHHHH-HHHHHHHTEEE--EEEEEEEEEEEE
T ss_pred hCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHHHhhhhhHH-HHHHHHHHHhh--hhcCCcEEEEec
Confidence 4556779999999999999999999999999 999999999999999999998 99999988321 135699999999
Q ss_pred ccccCCCCCCCcccchhH---HHH---------------HHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCCc
Q 019334 147 IDAGLGRFGNTQMTVNNQ---IVV---------------GTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIY 208 (342)
Q Consensus 147 IDAg~~r~~~t~~~v~~q---~V~---------------~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~~~Ld 208 (342)
||+++++++........+ .+. .++|..++. ........|+|++|||+++.+|
T Consensus 135 id~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~----------~~~~~~~~v~i~attn~~~~ld 204 (456)
T 2c9o_A 135 VTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQK----------ERVEAGDVIYIEANSGAVKRQG 204 (456)
T ss_dssp EEEEEEC--------------CEEEEEEETTEEEEEEECHHHHHHHHH----------TTCCTTEEEEEETTTCCEEEEE
T ss_pred hhhcccccCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHHHHHhh----------ccCCCCCEEEEEcCCCCcccCC
Confidence 999988765221100011 111 112222220 0011133467779999999999
Q ss_pred cCCCCCCCCcc--eecC--C--CHHHHHHHHHHHh
Q 019334 209 APLIRDGRMEK--FYWQ--P--NLEDILNIVHRMY 237 (342)
Q Consensus 209 paLlRpGRfD~--~i~v--P--~~~~R~~Il~~~~ 237 (342)
++++|+||||+ .+++ | +.++|.+|++.++
T Consensus 205 ~a~~r~~rfd~~~~~~v~~p~~~~~~R~~il~~~~ 239 (456)
T 2c9o_A 205 RCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVT 239 (456)
T ss_dssp EETTSCCTTSCSSSSEECCCCSCSEEEEEEEEEEE
T ss_pred hhhcCCcccCcceeEecCCCchhHHHHHHHHHHHH
Confidence 99999999999 3333 5 4477888887544
No 32
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.88 E-value=3.6e-22 Score=182.15 Aligned_cols=166 Identities=13% Similarity=0.151 Sum_probs=127.7
Q ss_pred cCCCCCeEEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccccccCCcH----HHHHHHHHHHHHhhhhcCCceEEEe
Q 019334 69 LNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPG----KLIRERYRTASQVVQNQGKMSCLMI 144 (342)
Q Consensus 69 ~~~k~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~~~GEsE----r~iR~~F~~A~e~~~~~~~PcILfI 144 (342)
.+.++|..++||||||||||++|+++|++++.+++.++.++ .+.|.++ ..+++.|..|. ..+|+||||
T Consensus 59 ~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~---~~~g~~~~~~~~~~~~~~~~~~-----~~~~~vl~i 130 (272)
T 1d2n_A 59 SDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPD---KMIGFSETAKCQAMKKIFDDAY-----KSQLSCVVV 130 (272)
T ss_dssp CSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGG---GCTTCCHHHHHHHHHHHHHHHH-----TSSEEEEEE
T ss_pred cCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHH---HhcCCchHHHHHHHHHHHHHHH-----hcCCcEEEE
Confidence 34577899999999999999999999999999999998876 4466655 67788887774 356999999
Q ss_pred ecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCCccCCCCCCCCcceecCC
Q 019334 145 NDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQP 224 (342)
Q Consensus 145 DEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~~~LdpaLlRpGRfD~~i~vP 224 (342)
||||.+++.+..... . ...+...|..++++. .....++.||+|||+++.|++..++ +||+..+.+|
T Consensus 131 DEid~l~~~~~~~~~-~-~~~~l~~L~~~~~~~-----------~~~~~~~~ii~ttn~~~~l~~~~l~-~rf~~~i~~p 196 (272)
T 1d2n_A 131 DDIERLLDYVPIGPR-F-SNLVLQALLVLLKKA-----------PPQGRKLLIIGTTSRKDVLQEMEML-NAFSTTIHVP 196 (272)
T ss_dssp CCHHHHTTCBTTTTB-C-CHHHHHHHHHHTTCC-----------CSTTCEEEEEEEESCHHHHHHTTCT-TTSSEEEECC
T ss_pred EChhhhhccCCCChh-H-HHHHHHHHHHHhcCc-----------cCCCCCEEEEEecCChhhcchhhhh-cccceEEcCC
Confidence 999998766542221 1 234566677766631 1114578899999999999984333 5999999999
Q ss_pred CHHHHHHHHHHHhhcCCCCHHHHHHHhhcCCC
Q 019334 225 NLEDILNIVHRMYEKDGITKDEVGSIVKTFPN 256 (342)
Q Consensus 225 ~~~~R~~Il~~~~~~~~~s~~di~~lvd~f~~ 256 (342)
+..+|.+|.+.+.+...++.+++..++....|
T Consensus 197 ~l~~r~~i~~i~~~~~~~~~~~~~~l~~~~~g 228 (272)
T 1d2n_A 197 NIATGEQLLEALELLGNFKDKERTTIAQQVKG 228 (272)
T ss_dssp CEEEHHHHHHHHHHHTCSCHHHHHHHHHHHTT
T ss_pred CccHHHHHHHHHHhcCCCCHHHHHHHHHHhcC
Confidence 99999989888877778888888888765544
No 33
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.86 E-value=3.6e-21 Score=176.70 Aligned_cols=154 Identities=14% Similarity=0.169 Sum_probs=122.4
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHhC-------CceEEeecccccccccCCcHHHHHHHHHHHHHhhhhcCCceEEEe
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQAMG-------IEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMI 144 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~~g-------~~~i~vs~~eL~s~~~GEsEr~iR~~F~~A~e~~~~~~~PcILfI 144 (342)
+++..++||||||||||++|+++|+.++ .+++.++++++.+.+.|++++.+++.|..|. ++||||
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~--------~~vl~i 136 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLKRAM--------GGVLFI 136 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTCCSSTTCHHHHHHHHHHHHT--------TSEEEE
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhhhhcccccHHHHHHHHHhcC--------CCEEEE
Confidence 4556899999999999999999999983 4899999999999999999999999998762 799999
Q ss_pred ecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCC-----CCccCCCCCCCCcc
Q 019334 145 NDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFS-----TIYAPLIRDGRMEK 219 (342)
Q Consensus 145 DEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~~-----~LdpaLlRpGRfD~ 219 (342)
||||.+++.+++... ++.+...|++++++ . ..++.||+|||..+ .++|+|++ ||+.
T Consensus 137 DEid~l~~~~~~~~~---~~~~~~~Ll~~l~~-------------~-~~~~~~i~~~~~~~~~~~~~~~~~l~~--R~~~ 197 (309)
T 3syl_A 137 DEAYYLYRPDNERDY---GQEAIEILLQVMEN-------------N-RDDLVVILAGYADRMENFFQSNPGFRS--RIAH 197 (309)
T ss_dssp ETGGGSCCCC---CC---THHHHHHHHHHHHH-------------C-TTTCEEEEEECHHHHHHHHHHSTTHHH--HEEE
T ss_pred EChhhhccCCCcccc---cHHHHHHHHHHHhc-------------C-CCCEEEEEeCChHHHHHHHhhCHHHHH--hCCe
Confidence 999998865442221 24466778877772 1 35789999998764 35799998 9987
Q ss_pred eecC--CCHHHHHHHHHHHhhcCC--CCHHHHHHHhh
Q 019334 220 FYWQ--PNLEDILNIVHRMYEKDG--ITKDEVGSIVK 252 (342)
Q Consensus 220 ~i~v--P~~~~R~~Il~~~~~~~~--~s~~di~~lvd 252 (342)
.+.+ |+.+++.+|++.+++..+ ++.+.+..+..
T Consensus 198 ~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~l~~ 234 (309)
T 3syl_A 198 HIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETALRA 234 (309)
T ss_dssp EEEECCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHH
T ss_pred EEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 6654 899999999999888655 56666666654
No 34
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.86 E-value=1.6e-22 Score=202.85 Aligned_cols=134 Identities=14% Similarity=0.109 Sum_probs=61.2
Q ss_pred CCeEEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccc-cccCC-cHHHHHHHHHHHHHhhhhcCCceEEEeeccccc
Q 019334 73 VPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELES-ERAGE-PGKLIRERYRTASQVVQNQGKMSCLMINDIDAG 150 (342)
Q Consensus 73 ~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s-~~~GE-sEr~iR~~F~~A~e~~~~~~~PcILfIDEIDAg 150 (342)
+|.+++|+||||||||++|+++|+.++++|+.++++++.+ +|+|+ +++.+|++|..|...+ ++||+|+.
T Consensus 49 ~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~d~e~~lr~lf~~a~~~~---------~~De~d~~ 119 (444)
T 1g41_A 49 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKLV---------RQQEIAKN 119 (444)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCCCTHHHHHHHHHHHHHHH---------HHHHHHSC
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeeccHHHHHHHHHHHHHhcc---------hhhhhhhh
Confidence 5789999999999999999999999999999999999999 69995 8999999999987543 48999986
Q ss_pred CCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEe-eCCCCCCccCCCCCCCCcceecC--CCHH
Q 019334 151 LGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFT-GNDFSTIYAPLIRDGRMEKFYWQ--PNLE 227 (342)
Q Consensus 151 ~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIat-TNr~~~LdpaLlRpGRfD~~i~v--P~~~ 227 (342)
..... ... .++|+++|++.||+. + + ...| +++ ||+|+.|||||+||||||+.|++ |+..
T Consensus 120 ~~~~~---~~~-e~rvl~~LL~~~dg~--------~-~---~~~v--~a~~TN~~~~ld~aL~rggr~D~~i~i~lP~~~ 181 (444)
T 1g41_A 120 RARAE---DVA-EERILDALLPPAKNQ--------W-G---EVEN--HDSHSSTRQAFRKKLREGQLDDKEIEIDVSAGV 181 (444)
T ss_dssp C-------------------------------------------------------------------------------
T ss_pred hccch---hhH-HHHHHHHHHHHhhcc--------c-c---cccc--ccccccCHHHHHHHHHcCCCcceEEEEcCCCCc
Confidence 54322 122 356888999988851 1 1 1233 555 99999999999999999998886 8877
Q ss_pred -HHHHHH
Q 019334 228 -DILNIV 233 (342)
Q Consensus 228 -~R~~Il 233 (342)
.|.+||
T Consensus 182 ~~~~ei~ 188 (444)
T 1g41_A 182 SMGVEIM 188 (444)
T ss_dssp -------
T ss_pred cchhhhh
Confidence 789987
No 35
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.83 E-value=1.8e-20 Score=170.62 Aligned_cols=157 Identities=17% Similarity=0.133 Sum_probs=115.3
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccc-cccCC-cHHHHHHHHHHHHHhhhhcCCceEEEeecccc
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELES-ERAGE-PGKLIRERYRTASQVVQNQGKMSCLMINDIDA 149 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s-~~~GE-sEr~iR~~F~~A~e~~~~~~~PcILfIDEIDA 149 (342)
..|..++||||||||||++|+++|+.++.+++.++++++.+ +|+|. .+..+++.|..+.......+.++||||||||.
T Consensus 48 ~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~ 127 (310)
T 1ofh_A 48 VTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDK 127 (310)
T ss_dssp CCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGG
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCccHHHHHHHHHHHhhHHHhhccCCCEEEEEChhh
Confidence 46788999999999999999999999999999999999987 67774 46778888865421111112489999999999
Q ss_pred cCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEe----eCCCCCCccCCCCCCCCcceecC--
Q 019334 150 GLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFT----GNDFSTIYAPLIRDGRMEKFYWQ-- 223 (342)
Q Consensus 150 g~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIat----TNr~~~LdpaLlRpGRfD~~i~v-- 223 (342)
..+...+.+.+...+.+...|+.++++.+.....+ ..+ ..++.+|+| +|.++.++|+|++ ||+..+.+
T Consensus 128 l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~---~~~-~~~~~~i~~~~~~~~~~~~l~~~l~~--R~~~~i~~~~ 201 (310)
T 1ofh_A 128 ICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHG---MVK-TDHILFIASGAFQVARPSDLIPELQG--RLPIRVELTA 201 (310)
T ss_dssp GSCCSSCCSSHHHHHHHHHHHHHHHHCCEEEETTE---EEE-CTTCEEEEEECCSSSCGGGSCHHHHH--TCCEEEECCC
T ss_pred cCccccccccchhHHHHHHHHHHHhcCCeEecccc---ccc-CCcEEEEEcCCcccCCcccCCHHHHh--hCCceEEcCC
Confidence 87655433334444556778888887531111111 111 457888888 5688999999986 99975654
Q ss_pred CCHHHHHHHHH
Q 019334 224 PNLEDILNIVH 234 (342)
Q Consensus 224 P~~~~R~~Il~ 234 (342)
|+.+++.+|++
T Consensus 202 ~~~~~~~~il~ 212 (310)
T 1ofh_A 202 LSAADFERILT 212 (310)
T ss_dssp CCHHHHHHHHH
T ss_pred cCHHHHHHHHH
Confidence 79999999998
No 36
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.82 E-value=1.1e-20 Score=179.86 Aligned_cols=103 Identities=18% Similarity=0.234 Sum_probs=81.2
Q ss_pred CCeEEEeecCCCCCHHHHHHHHHHHhCCceEEeeccccccc-ccCCc-HHHHHHHHHHHHHhhhhcCCceEEEeeccccc
Q 019334 73 VPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESE-RAGEP-GKLIRERYRTASQVVQNQGKMSCLMINDIDAG 150 (342)
Q Consensus 73 ~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~-~~GEs-Er~iR~~F~~A~e~~~~~~~PcILfIDEIDAg 150 (342)
+|..++|+||||||||++|+++|+.++.+|+.++++++... |.|+. ++.+++.|+.+.-... ...||||||||||+.
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~vl~lDEid~l 128 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ-KAQRGIVYIDQIDKI 128 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHHHHTHHHHHHHHHTTTCHH-HHHHCEEEEECHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhcccccccccHHHHHHHHHHHhhhhHH-hcCCcEEEEeChhhh
Confidence 56799999999999999999999999999999999999864 89987 7888888877621111 224899999999998
Q ss_pred CCCCC--CCcccchhHHHHHHHHhhcCC
Q 019334 151 LGRFG--NTQMTVNNQIVVGTLMNLSDN 176 (342)
Q Consensus 151 ~~r~~--~t~~~v~~q~V~~tLl~llD~ 176 (342)
.+.++ +.+.++..+.++..|+.+||+
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~Ll~~leg 156 (363)
T 3hws_A 129 SRKSDNPSITRDVSGEGVQQALLKLIEG 156 (363)
T ss_dssp CCCSSCC---CHHHHHHHHHHHHHHHHC
T ss_pred cccccccccccccchHHHHHHHHHHhcC
Confidence 76554 223344445688899999984
No 37
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.80 E-value=1.5e-19 Score=183.41 Aligned_cols=168 Identities=20% Similarity=0.239 Sum_probs=112.4
Q ss_pred CCeEEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccc---------cccCCcHHHHHHHHHHHHHhhhhcCCceEEE
Q 019334 73 VPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELES---------ERAGEPGKLIRERYRTASQVVQNQGKMSCLM 143 (342)
Q Consensus 73 ~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s---------~~~GEsEr~iR~~F~~A~e~~~~~~~PcILf 143 (342)
.+..++|+||||||||++|+++|+.++.+++.++.+.+.+ .|+|..+..+++.|..|.. ..| |||
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g~~~~~ig~~~~~~~~~~~~a~~-----~~~-vl~ 180 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAMPGRIIQGMKKAGK-----LNP-VFL 180 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC--------------------CHHHHHHTTCS-----SSE-EEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhhHHHHHhccCchHHHHHHHHhhc-----cCC-EEE
Confidence 4568999999999999999999999999999999877654 7889999999999977642 235 999
Q ss_pred eecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccC-CCCCccEEEeeCCCCCCccCCCCCCCCcceec
Q 019334 144 INDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESD-ITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYW 222 (342)
Q Consensus 144 IDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~-~~~~V~VIatTNr~~~LdpaLlRpGRfD~~i~ 222 (342)
|||||+..+.+.+ .+...|+..+|...+-.+...+.... ...+|.||+|||+++.|||||+| ||+.+.+
T Consensus 181 lDEid~l~~~~~~--------~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN~~~~l~~aL~~--R~~vi~~ 250 (543)
T 3m6a_A 181 LDEIDKMSSDFRG--------DPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATANNLATIPGPLRD--RMEIINI 250 (543)
T ss_dssp EEESSSCC-----------------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECSSTTTSCHHHHH--HEEEEEC
T ss_pred Ehhhhhhhhhhcc--------CHHHHHHHHHhhhhcceeecccCCeeecccceEEEeccCccccCCHHHHh--hcceeee
Confidence 9999998754321 13456788887421111110011111 02578999999999999999999 9975433
Q ss_pred -CCCHHHHHHHHHHHhhc------------CCCCHHHHHHHhhcCCC
Q 019334 223 -QPNLEDILNIVHRMYEK------------DGITKDEVGSIVKTFPN 256 (342)
Q Consensus 223 -vP~~~~R~~Il~~~~~~------------~~~s~~di~~lvd~f~~ 256 (342)
.|+.++|.+|++.++.. -.++.+.+..++..|.+
T Consensus 251 ~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~~~~ 297 (543)
T 3m6a_A 251 AGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRYYTR 297 (543)
T ss_dssp CCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHHHCC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHhCCh
Confidence 38999999999987621 13577888888876654
No 38
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.79 E-value=1e-20 Score=157.41 Aligned_cols=135 Identities=19% Similarity=0.209 Sum_probs=102.1
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHh----------CCceEEeeccccc--ccccCCcHHHHHHHHHHHHHhhhhcCCc
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQAM----------GIEPVIMSAGELE--SERAGEPGKLIRERYRTASQVVQNQGKM 139 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~~----------g~~~i~vs~~eL~--s~~~GEsEr~iR~~F~~A~e~~~~~~~P 139 (342)
..+..++|+||||||||++++++++++ +.+++.++.+++. ..+.|+.++.+++.+..+.. .+.|
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 116 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAK----QEGN 116 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHTTTCSHHHHHHHHHHHHHHHHH----STTT
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHHhccCCccccHHHHHHHHHHHHhh----cCCC
Confidence 557789999999999999999999996 8899999998887 45778888888888876643 4679
Q ss_pred eEEEeecccccCCCCCC-CcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCC-----CCccCCCC
Q 019334 140 SCLMINDIDAGLGRFGN-TQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFS-----TIYAPLIR 213 (342)
Q Consensus 140 cILfIDEIDAg~~r~~~-t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~~-----~LdpaLlR 213 (342)
+||||||+|...+..+. .+.. +...|..+++ ..++.+|+|||.++ .++++|++
T Consensus 117 ~vl~iDe~~~l~~~~~~~~~~~-----~~~~l~~~~~----------------~~~~~~i~~~~~~~~~~~~~~~~~l~~ 175 (195)
T 1jbk_A 117 VILFIDELHTMVGAGKADGAMD-----AGNMLKPALA----------------RGELHCVGATTLDEYRQYIEKDAALER 175 (195)
T ss_dssp EEEEEETGGGGTT------CCC-----CHHHHHHHHH----------------TTSCCEEEEECHHHHHHHTTTCHHHHT
T ss_pred eEEEEeCHHHHhccCcccchHH-----HHHHHHHhhc----------------cCCeEEEEeCCHHHHHHHHhcCHHHHH
Confidence 99999999998754431 1111 2222333222 24688999999987 79999999
Q ss_pred CCCCcceec-CCCHHHHHHHH
Q 019334 214 DGRMEKFYW-QPNLEDILNIV 233 (342)
Q Consensus 214 pGRfD~~i~-vP~~~~R~~Il 233 (342)
||+.+.. .|+.++|.+||
T Consensus 176 --r~~~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 176 --RFQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp --TEEEEECCCCCHHHHHTTC
T ss_pred --HhceeecCCCCHHHHHHHh
Confidence 9986433 49999999886
No 39
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.77 E-value=1.1e-18 Score=162.80 Aligned_cols=158 Identities=14% Similarity=0.053 Sum_probs=113.0
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccccccCCcHHHHHHHHHHHHHhhhhcCCceEEEeecccccC
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGL 151 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~~~GEsEr~iR~~F~~A~e~~~~~~~PcILfIDEIDAg~ 151 (342)
+.+..++|+||||||||++|+++|++++.+|+.++++.+. ....++..+.. ...+++|||||||...
T Consensus 53 ~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~------~~~~~~~~~~~-------~~~~~vl~lDEi~~l~ 119 (338)
T 3pfi_A 53 ECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIE------KSGDLAAILTN-------LSEGDILFIDEIHRLS 119 (338)
T ss_dssp SCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCC------SHHHHHHHHHT-------CCTTCEEEEETGGGCC
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhcc------chhHHHHHHHh-------ccCCCEEEEechhhcC
Confidence 4567899999999999999999999999999999998764 23344444432 3468999999999874
Q ss_pred CCCCCCcccchhHHHHHHHHhhcCCCCccccCccc---c--ccCCCCCccEEEeeCCCCCCccCCCCCCCCcceecC--C
Q 019334 152 GRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDW---R--ESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQ--P 224 (342)
Q Consensus 152 ~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~---~--~~~~~~~V~VIatTNr~~~LdpaLlRpGRfD~~i~v--P 224 (342)
+ .+...|+..+++...--+.+.- . ..+ .+++.+|+|||+...++|+|++ |||..+.+ |
T Consensus 120 ~------------~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~atn~~~~l~~~L~~--R~~~~i~l~~~ 184 (338)
T 3pfi_A 120 P------------AIEEVLYPAMEDYRLDIIIGSGPAAQTIKID-LPKFTLIGATTRAGMLSNPLRD--RFGMQFRLEFY 184 (338)
T ss_dssp H------------HHHHHHHHHHHTSCC---------CCCCCCC-CCCCEEEEEESCGGGSCHHHHT--TCSEEEECCCC
T ss_pred H------------HHHHHHHHHHHhccchhhcccCccccceecC-CCCeEEEEeCCCccccCHHHHh--hcCEEeeCCCc
Confidence 2 1334455555532110111100 0 001 2358899999999999999998 99877664 8
Q ss_pred CHHHHHHHHHHHhhcCC--CCHHHHHHHhhcCCCC
Q 019334 225 NLEDILNIVHRMYEKDG--ITKDEVGSIVKTFPNQ 257 (342)
Q Consensus 225 ~~~~R~~Il~~~~~~~~--~s~~di~~lvd~f~~~ 257 (342)
+.+++..|++.+....+ ++.+.+..++...+|-
T Consensus 185 ~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G~ 219 (338)
T 3pfi_A 185 KDSELALILQKAALKLNKTCEEKAALEIAKRSRST 219 (338)
T ss_dssp CHHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTTC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcC
Confidence 99999999998887665 6777788888755653
No 40
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.76 E-value=1.1e-17 Score=157.19 Aligned_cols=155 Identities=18% Similarity=0.145 Sum_probs=107.7
Q ss_pred CCCCCeEEEeecCCCCCHHHHHHHHHHHhCC--ceEEeecccccccc---------------------------------
Q 019334 70 NVKVPLILGIWGGKGQGKSFQTELIFQAMGI--EPVIMSAGELESER--------------------------------- 114 (342)
Q Consensus 70 ~~k~PlglgL~GPPG~GKTllaravA~~~g~--~~i~vs~~eL~s~~--------------------------------- 114 (342)
+..+|..++|+||||||||++|+++|++++. +++.++++++++.+
T Consensus 66 ~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld 145 (368)
T 3uk6_A 66 GKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEID 145 (368)
T ss_dssp TCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSCSSSCHHHHHHHHHHHSBEECC------CEEHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhhcccchhHHHHHHHHHHHHHHhhhhccccccHhhhh
Confidence 3344689999999999999999999999985 88899988755544
Q ss_pred ----------------cCCcHHHHHHHHHHHHHhhhhcCC----ceEEEeecccccCCCCCCCcccchhHHHHHHHHhhc
Q 019334 115 ----------------AGEPGKLIRERYRTASQVVQNQGK----MSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLS 174 (342)
Q Consensus 115 ----------------~GEsEr~iR~~F~~A~e~~~~~~~----PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~ll 174 (342)
.|+....+|+.|..+.......++ |+||||||||.... .....|+..+
T Consensus 146 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~~l~~------------~~~~~L~~~l 213 (368)
T 3uk6_A 146 VINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHMLDI------------ESFSFLNRAL 213 (368)
T ss_dssp HHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGGGSBH------------HHHHHHHHHT
T ss_pred hhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhccccCh------------HHHHHHHHHh
Confidence 444456677777776553322333 89999999998731 2344566555
Q ss_pred CCCCccccCccccccCCCCCccEEEee-----------CCCCCCccCCCCCCCCcceec-CCCHHHHHHHHHHHhhcCC-
Q 019334 175 DNPTRVSIGQDWRESDITNRIPIIFTG-----------NDFSTIYAPLIRDGRMEKFYW-QPNLEDILNIVHRMYEKDG- 241 (342)
Q Consensus 175 D~p~~v~l~g~~~~~~~~~~V~VIatT-----------Nr~~~LdpaLlRpGRfD~~i~-vP~~~~R~~Il~~~~~~~~- 241 (342)
+.+ ..++++++|. |.+..|+|+|++ ||..+.+ .|+.+++.+|++..+...+
T Consensus 214 e~~--------------~~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~s--R~~~i~~~~~~~~e~~~il~~~~~~~~~ 277 (368)
T 3uk6_A 214 ESD--------------MAPVLIMATNRGITRIRGTSYQSPHGIPIDLLD--RLLIVSTTPYSEKDTKQILRIRCEEEDV 277 (368)
T ss_dssp TCT--------------TCCEEEEEESCSEEECBTSSCEEETTCCHHHHT--TEEEEEECCCCHHHHHHHHHHHHHHTTC
T ss_pred hCc--------------CCCeeeeecccceeeeeccCCCCcccCCHHHHh--hccEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 531 2234333332 458899999999 8877444 3799999999998777543
Q ss_pred -CCHHHHHHHhh
Q 019334 242 -ITKDEVGSIVK 252 (342)
Q Consensus 242 -~s~~di~~lvd 252 (342)
++.+.++.++.
T Consensus 278 ~~~~~~l~~l~~ 289 (368)
T 3uk6_A 278 EMSEDAYTVLTR 289 (368)
T ss_dssp CBCHHHHHHHHH
T ss_pred CCCHHHHHHHHH
Confidence 67777776664
No 41
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.72 E-value=1.7e-18 Score=144.69 Aligned_cols=124 Identities=14% Similarity=0.109 Sum_probs=93.3
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHh----------CCceEEeecccccc--cccCCcHHHHHHHHHHHHHhhhhcCCc
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQAM----------GIEPVIMSAGELES--ERAGEPGKLIRERYRTASQVVQNQGKM 139 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~~----------g~~~i~vs~~eL~s--~~~GEsEr~iR~~F~~A~e~~~~~~~P 139 (342)
..+..++|+||||||||++|+++|+++ +.+++.++..++.. .+.|+.+..+++.+..+.. .+.|
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 116 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDLSSLIAGAKYRGDFEERLKSILKEVQD----AEGQ 116 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECHHHHHHHCCSHHHHHHHHHHHHHHHHH----TTTS
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeHHHhhcCCCchhHHHHHHHHHHHHHHh----cCCc
Confidence 456788999999999999999999997 88999999888773 4667778888888877653 3569
Q ss_pred eEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCC-----CCccCCCCC
Q 019334 140 SCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFS-----TIYAPLIRD 214 (342)
Q Consensus 140 cILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~~-----~LdpaLlRp 214 (342)
+||||||+|...+.+...+.. +.+...|..+++ ..++.+|+|||.++ .++++|+|
T Consensus 117 ~vl~iDe~~~l~~~~~~~~~~---~~~~~~l~~~~~----------------~~~~~ii~~~~~~~~~~~~~~~~~l~~- 176 (187)
T 2p65_A 117 VVMFIDEIHTVVGAGAVAEGA---LDAGNILKPMLA----------------RGELRCIGATTVSEYRQFIEKDKALER- 176 (187)
T ss_dssp EEEEETTGGGGSSSSSSCTTS---CCTHHHHHHHHH----------------TTCSCEEEEECHHHHHHHTTTCHHHHH-
T ss_pred eEEEEeCHHHhcccccccccc---hHHHHHHHHHHh----------------cCCeeEEEecCHHHHHHHHhccHHHHH-
Confidence 999999999987543311111 112333433333 25688999999876 68999999
Q ss_pred CCCcce
Q 019334 215 GRMEKF 220 (342)
Q Consensus 215 GRfD~~ 220 (342)
||+.+
T Consensus 177 -R~~~i 181 (187)
T 2p65_A 177 -RFQQI 181 (187)
T ss_dssp -HEEEE
T ss_pred -hcCcc
Confidence 99973
No 42
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.71 E-value=2.9e-17 Score=173.96 Aligned_cols=154 Identities=18% Similarity=0.172 Sum_probs=101.1
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHh----------CCceEEeeccccc--ccccCCcHHHHHHHHHHHHHhhhhcCCc
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQAM----------GIEPVIMSAGELE--SERAGEPGKLIRERYRTASQVVQNQGKM 139 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~~----------g~~~i~vs~~eL~--s~~~GEsEr~iR~~F~~A~e~~~~~~~P 139 (342)
+.+..++|+||||||||++|+++|.++ +.+++.++.+.+. .++.|+.++.++.+|..+.. .+.|
T Consensus 189 ~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~g~~~~g~~~~~l~~~~~~~~~----~~~~ 264 (854)
T 1qvr_A 189 RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAVIQEVVQ----SQGE 264 (854)
T ss_dssp SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-----------CHHHHHHHHHHHHHT----TCSS
T ss_pred CCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhccCccchHHHHHHHHHHHHHHh----cCCC
Confidence 456678999999999999999999998 9999999999998 57899999999999988763 3469
Q ss_pred eEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCC----CCccCCCCCC
Q 019334 140 SCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFS----TIYAPLIRDG 215 (342)
Q Consensus 140 cILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~~----~LdpaLlRpG 215 (342)
+||||||||.+.+..+..+ . ..+...|..++. ..++.+|+|||.++ .+||+|+|
T Consensus 265 ~iL~IDEi~~l~~~~~~~g-~---~~~~~~L~~~l~----------------~~~i~~I~at~~~~~~~~~~d~aL~r-- 322 (854)
T 1qvr_A 265 VILFIDELHTVVGAGKAEG-A---VDAGNMLKPALA----------------RGELRLIGATTLDEYREIEKDPALER-- 322 (854)
T ss_dssp EEEEECCC-----------------------HHHHH----------------TTCCCEEEEECHHHHHHHTTCTTTCS--
T ss_pred eEEEEecHHHHhccCCccc-h---HHHHHHHHHHHh----------------CCCeEEEEecCchHHhhhccCHHHHh--
Confidence 9999999999876543211 1 112223333322 24688999999875 48999999
Q ss_pred CCcceec-CCCHHHHHHHHHHHhh------cCCCCHHHHHHHh
Q 019334 216 RMEKFYW-QPNLEDILNIVHRMYE------KDGITKDEVGSIV 251 (342)
Q Consensus 216 RfD~~i~-vP~~~~R~~Il~~~~~------~~~~s~~di~~lv 251 (342)
||+.+.+ .|+.+++.+||+.++. ...++.+.+..++
T Consensus 323 Rf~~i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~ 365 (854)
T 1qvr_A 323 RFQPVYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAA 365 (854)
T ss_dssp CCCCEEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHH
T ss_pred CCceEEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHH
Confidence 9997433 4999999999986654 2235666555554
No 43
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.70 E-value=1.7e-17 Score=154.12 Aligned_cols=159 Identities=19% Similarity=0.297 Sum_probs=112.1
Q ss_pred HHHHHHHHhhcCCCCCeEEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccccccCCcHHHHHHHHHHHHHhhhhcCC
Q 019334 59 HIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGK 138 (342)
Q Consensus 59 hi~K~~l~~~~~~k~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~~~GEsEr~iR~~F~~A~e~~~~~~~ 138 (342)
..+++++. ..+.|..++++||||||||++|+++|++++.+++.+++++. +...+++.+..+.......+.
T Consensus 36 ~~l~~~l~---~~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~-------~~~~i~~~~~~~~~~~~~~~~ 105 (324)
T 3u61_B 36 ETFKSITS---KGKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDC-------KIDFVRGPLTNFASAASFDGR 105 (324)
T ss_dssp HHHHHHHH---TTCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTC-------CHHHHHTHHHHHHHBCCCSSC
T ss_pred HHHHHHHH---cCCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEccccc-------CHHHHHHHHHHHHhhcccCCC
Confidence 34455554 34677889999999999999999999999999999998762 266777777665544333457
Q ss_pred ceEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCCccCCCCCCCCc
Q 019334 139 MSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRME 218 (342)
Q Consensus 139 PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~~~LdpaLlRpGRfD 218 (342)
++||||||+|...+. .....|+..++.| ..++.+|+|||+++.++++|++ |+.
T Consensus 106 ~~vliiDEi~~l~~~-----------~~~~~L~~~le~~--------------~~~~~iI~~~n~~~~l~~~l~s--R~~ 158 (324)
T 3u61_B 106 QKVIVIDEFDRSGLA-----------ESQRHLRSFMEAY--------------SSNCSIIITANNIDGIIKPLQS--RCR 158 (324)
T ss_dssp EEEEEEESCCCGGGH-----------HHHHHHHHHHHHH--------------GGGCEEEEEESSGGGSCTTHHH--HSE
T ss_pred CeEEEEECCcccCcH-----------HHHHHHHHHHHhC--------------CCCcEEEEEeCCccccCHHHHh--hCc
Confidence 999999999987411 1233455544421 2468899999999999999999 886
Q ss_pred ceec-CCCHHHHHHHHHHHh-------hcCC--CCH-HHHHHHhhcC
Q 019334 219 KFYW-QPNLEDILNIVHRMY-------EKDG--ITK-DEVGSIVKTF 254 (342)
Q Consensus 219 ~~i~-vP~~~~R~~Il~~~~-------~~~~--~s~-~di~~lvd~f 254 (342)
.+-+ .|+.++|.+|++.+. ...+ ++. +.++.++...
T Consensus 159 ~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~ 205 (324)
T 3u61_B 159 VITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKN 205 (324)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHT
T ss_pred EEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhC
Confidence 5433 489999887765432 2333 445 5566666543
No 44
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.70 E-value=1.8e-16 Score=164.57 Aligned_cols=155 Identities=19% Similarity=0.181 Sum_probs=114.5
Q ss_pred CCCCeEEEeecCCCCCHHHHHHHHHHHh----------CCceEEeeccccc--ccccCCcHHHHHHHHHHHHHhhhhcCC
Q 019334 71 VKVPLILGIWGGKGQGKSFQTELIFQAM----------GIEPVIMSAGELE--SERAGEPGKLIRERYRTASQVVQNQGK 138 (342)
Q Consensus 71 ~k~PlglgL~GPPG~GKTllaravA~~~----------g~~~i~vs~~eL~--s~~~GEsEr~iR~~F~~A~e~~~~~~~ 138 (342)
.+.+..++|+||||||||++|+++|..+ +..++.++.+.+. .++.|+.++.++.+|..+.. ..
T Consensus 204 ~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~~~~~~g~~e~~l~~~~~~~~~-----~~ 278 (758)
T 1r6b_X 204 RRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQ-----DT 278 (758)
T ss_dssp SSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCCCCSSCHHHHHHHHHHHHSS-----SS
T ss_pred ccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhccccccchHHHHHHHHHHHHHh-----cC
Confidence 4567789999999999999999999987 7789999999888 46899999999999987752 35
Q ss_pred ceEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCC-----CCccCCCC
Q 019334 139 MSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFS-----TIYAPLIR 213 (342)
Q Consensus 139 PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~~-----~LdpaLlR 213 (342)
++||||||||.+++..+...+ ...+...|..+++ ...+.+|+|||.++ .+||+|.|
T Consensus 279 ~~iL~IDEi~~l~~~~~~~~~---~~~~~~~L~~~l~----------------~~~~~~I~at~~~~~~~~~~~d~aL~~ 339 (758)
T 1r6b_X 279 NSILFIDEIHTIIGAGAASGG---QVDAANLIKPLLS----------------SGKIRVIGSTTYQEFSNIFEKDRALAR 339 (758)
T ss_dssp CEEEEETTTTTTTTSCCSSSC---HHHHHHHHSSCSS----------------SCCCEEEEEECHHHHHCCCCCTTSSGG
T ss_pred CeEEEEechHHHhhcCCCCcc---hHHHHHHHHHHHh----------------CCCeEEEEEeCchHHhhhhhcCHHHHh
Confidence 899999999998876543221 1223333433322 34688999998653 68999999
Q ss_pred CCCCcceec-CCCHHHHHHHHHHHhhc------CCCCHHHHHHHh
Q 019334 214 DGRMEKFYW-QPNLEDILNIVHRMYEK------DGITKDEVGSIV 251 (342)
Q Consensus 214 pGRfD~~i~-vP~~~~R~~Il~~~~~~------~~~s~~di~~lv 251 (342)
||+.+.+ .|+.++|.+||+.+... ..++.+.+..++
T Consensus 340 --Rf~~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~al~~~~ 382 (758)
T 1r6b_X 340 --RFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAV 382 (758)
T ss_dssp --GEEEEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred --CceEEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 9996333 49999999999876542 346666665555
No 45
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.70 E-value=4e-17 Score=150.38 Aligned_cols=160 Identities=16% Similarity=0.085 Sum_probs=110.1
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccccccCCcHHHHHHHHHHHHHhhhhcCCceEEEeecccccC
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGL 151 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~~~GEsEr~iR~~F~~A~e~~~~~~~PcILfIDEIDAg~ 151 (342)
+.+..++|+||||||||++|++++++++.+++.++++.+.. +..+...|..+ ...+++|||||||...
T Consensus 36 ~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~------~~~l~~~l~~~------~~~~~~l~lDEi~~l~ 103 (324)
T 1hqc_A 36 EPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK------PGDLAAILANS------LEEGDILFIDEIHRLS 103 (324)
T ss_dssp SCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCS------HHHHHHHHTTT------CCTTCEEEETTTTSCC
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCC------hHHHHHHHHHh------ccCCCEEEEECCcccc
Confidence 46678999999999999999999999999999999887643 34444444321 2468999999999874
Q ss_pred CCCCCCcccchhHHHHHHHHhhcCCCCccccCc-cccccC---CCCCccEEEeeCCCCCCccCCCCCCCCcceec--CCC
Q 019334 152 GRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQ-DWRESD---ITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYW--QPN 225 (342)
Q Consensus 152 ~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g-~~~~~~---~~~~V~VIatTNr~~~LdpaLlRpGRfD~~i~--vP~ 225 (342)
.. ....|+..+++...--+.+ .+.... ...++.+|+|||+++.++++|++ ||+..+. .|+
T Consensus 104 ~~------------~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~--R~~~~i~l~~~~ 169 (324)
T 1hqc_A 104 RQ------------AEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLS--RFGIVEHLEYYT 169 (324)
T ss_dssp HH------------HHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTTT--TCSCEEECCCCC
T ss_pred cc------------hHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcccCCHHHHh--cccEEEecCCCC
Confidence 21 1233444444211000111 000000 02468899999999999999987 9976554 489
Q ss_pred HHHHHHHHHHHhhcC--CCCHHHHHHHhhcCCCC
Q 019334 226 LEDILNIVHRMYEKD--GITKDEVGSIVKTFPNQ 257 (342)
Q Consensus 226 ~~~R~~Il~~~~~~~--~~s~~di~~lvd~f~~~ 257 (342)
.+++.+|++.+.... .++.+.++.++...+|-
T Consensus 170 ~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~ 203 (324)
T 1hqc_A 170 PEELAQGVMRDARLLGVRITEEAALEIGRRSRGT 203 (324)
T ss_dssp HHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCSC
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCC
Confidence 999999999887754 46777777777655543
No 46
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.69 E-value=5.2e-17 Score=155.02 Aligned_cols=143 Identities=19% Similarity=0.246 Sum_probs=88.1
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHhCCceEEeeccccc-ccccCCc-HHHHHHHHHHHHHhhhhcCCceEEEeecccc
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELE-SERAGEP-GKLIRERYRTASQVVQNQGKMSCLMINDIDA 149 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~-s~~~GEs-Er~iR~~F~~A~e~~~~~~~PcILfIDEIDA 149 (342)
+.+..++||||||||||++|+++|+.++.+++.++++++. ++|.|+. +..++..|..+..... +..++||||||||.
T Consensus 70 ~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~vl~iDEi~~ 148 (376)
T 1um8_A 70 LSKSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQ-KAQKGIVFIDEIDK 148 (376)
T ss_dssp CCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGCC--------CTHHHHHHHHHTTTCHH-HHTTSEEEEETGGG
T ss_pred cCCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEecchhhhhcCcCCccHHHHHHHHHhhccchhh-hcCCeEEEEcCHHH
Confidence 4567899999999999999999999999999999999887 5788876 6667777765432211 23589999999999
Q ss_pred cCCCCCC--CcccchhHHHHHHHHhhcCCCCc-c-ccCccccc------cCCCCCccEEEeeCCCCCCccCCCCCCCCcc
Q 019334 150 GLGRFGN--TQMTVNNQIVVGTLMNLSDNPTR-V-SIGQDWRE------SDITNRIPIIFTGNDFSTIYAPLIRDGRMEK 219 (342)
Q Consensus 150 g~~r~~~--t~~~v~~q~V~~tLl~llD~p~~-v-~l~g~~~~------~~~~~~V~VIatTNr~~~LdpaLlRpGRfD~ 219 (342)
..+.+++ ...+.....+...|+.++++... + ..++.... .. +.++.+|+||| ++.|++++.| ||++
T Consensus 149 l~~~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~~~~i~-t~n~~~I~~~~-~~~l~~~l~~--R~~~ 224 (376)
T 1um8_A 149 ISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQID-TSDILFICAGA-FDGLAEIIKK--RTTQ 224 (376)
T ss_dssp C--------------CHHHHHHHHHHHHCCEEC---------------CEE-CTTCEEEEEEC-CTTHHHHTTT--SCSS
T ss_pred HhhhcCCCceecccchHHHHHHHHHHhhccceecccccccccCCcceEEEe-cCCeEEEecCC-HHHHHHHHHH--Hhcc
Confidence 8765432 11222223467788888885310 0 01110000 01 35678888888 6788888887 6653
No 47
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.67 E-value=9.6e-16 Score=140.41 Aligned_cols=182 Identities=15% Similarity=0.160 Sum_probs=113.0
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCC-eEEEeecCCCCCHHHHHHHHHHHh---CCceEEeeccccccc-----ccCCcHHH
Q 019334 51 VFMASLLCHIVKNYIAHLLNVKVP-LILGIWGGKGQGKSFQTELIFQAM---GIEPVIMSAGELESE-----RAGEPGKL 121 (342)
Q Consensus 51 ~f~d~l~~hi~K~~l~~~~~~k~P-lglgL~GPPG~GKTllaravA~~~---g~~~i~vs~~eL~s~-----~~GEsEr~ 121 (342)
.-+..+...+.+.... +.....| ..++|+||||||||++|+++|+.+ +.+++.++.+++... +.|.+...
T Consensus 24 ~~~~~l~~~i~~~~~~-~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~ 102 (311)
T 4fcw_A 24 EAIRAVADAIRRARAG-LKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGY 102 (311)
T ss_dssp HHHHHHHHHHHHHHHT-CSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHHHHHHCCCTTS
T ss_pred HHHHHHHHHHHHHhcC-CCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccHHHhcCCCCcc
Confidence 3344444444333322 2223334 479999999999999999999998 567999998876432 22221100
Q ss_pred H----HHHHHHHHHhhhhcCCceEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccE
Q 019334 122 I----RERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPI 197 (342)
Q Consensus 122 i----R~~F~~A~e~~~~~~~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~V 197 (342)
+ ...|..+.. ....+||||||||...+ .+...|+.++++.....-.+ ...+ .+++.|
T Consensus 103 ~~~~~~~~~~~~~~----~~~~~vl~lDEi~~l~~------------~~~~~Ll~~le~~~~~~~~~--~~~~-~~~~ii 163 (311)
T 4fcw_A 103 VGYEEGGQLTEAVR----RRPYSVILFDAIEKAHP------------DVFNILLQMLDDGRLTDSHG--RTVD-FRNTVI 163 (311)
T ss_dssp TTTTTCCHHHHHHH----HCSSEEEEEETGGGSCH------------HHHHHHHHHHHHSEEECTTS--CEEE-CTTEEE
T ss_pred ccccccchHHHHHH----hCCCeEEEEeChhhcCH------------HHHHHHHHHHhcCEEEcCCC--CEEE-CCCcEE
Confidence 0 012333332 23369999999998732 24556777776432110000 0011 246779
Q ss_pred EEeeCC--------------------------CCCCccCCCCCCCCcceecC--CCHHHHHHHHHHHhhc----------
Q 019334 198 IFTGND--------------------------FSTIYAPLIRDGRMEKFYWQ--PNLEDILNIVHRMYEK---------- 239 (342)
Q Consensus 198 IatTNr--------------------------~~~LdpaLlRpGRfD~~i~v--P~~~~R~~Il~~~~~~---------- 239 (342)
|+|||. ...++|+|+. ||+..+.. |+.+++..|++.++..
T Consensus 164 I~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~--R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~~~~~~ 241 (311)
T 4fcw_A 164 IMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQMSYLRARLAEKRI 241 (311)
T ss_dssp EEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHTHHHHHHHHTTTC
T ss_pred EEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHh--cCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 999999 5578888884 99986643 7999999999876542
Q ss_pred -CCCCHHHHHHHhh-cC
Q 019334 240 -DGITKDEVGSIVK-TF 254 (342)
Q Consensus 240 -~~~s~~di~~lvd-~f 254 (342)
..++.+.++.|.. .+
T Consensus 242 ~~~~~~~~~~~l~~~~~ 258 (311)
T 4fcw_A 242 SLELTEAAKDFLAERGY 258 (311)
T ss_dssp EEEECHHHHHHHHHHSC
T ss_pred EEEeCHHHHHHHHHhCC
Confidence 2367777777776 44
No 48
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.66 E-value=2e-16 Score=147.61 Aligned_cols=167 Identities=14% Similarity=0.169 Sum_probs=110.7
Q ss_pred HHHHHHHHHHHhhcCCCCCeEEEeecCCCCCHHHHHHHHHHHh---CCceEEeecccccccccCCcHHHHHHHHHHHHHh
Q 019334 56 LLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAM---GIEPVIMSAGELESERAGEPGKLIRERYRTASQV 132 (342)
Q Consensus 56 l~~hi~K~~l~~~~~~k~PlglgL~GPPG~GKTllaravA~~~---g~~~i~vs~~eL~s~~~GEsEr~iR~~F~~A~e~ 132 (342)
.+...++.++. .++ +.+..++||||||||||++|+++++++ +.+++.+++.++.+.+.+.-.....+.|..+.
T Consensus 21 ~a~~~~~~~~~-~~~-~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-- 96 (324)
T 1l8q_A 21 LAYEVVKEALE-NLG-SLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEHLKKGTINEFRNMY-- 96 (324)
T ss_dssp HHHHHHHHHHH-TTT-TSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHHHHHHTCHHHHHHHH--
T ss_pred HHHHHHHHHHh-CcC-CCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHcCcHHHHHHHh--
Confidence 34445666665 333 356789999999999999999999999 99999999998876655444333334444332
Q ss_pred hhhcCCceEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCC---CCcc
Q 019334 133 VQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFS---TIYA 209 (342)
Q Consensus 133 ~~~~~~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~~---~Ldp 209 (342)
..|+||||||||...+... .+ ..|+.+++. +.. .....|++++|.+. .+++
T Consensus 97 ----~~~~vL~iDEi~~l~~~~~-------~~---~~l~~~l~~---------~~~---~~~~iii~~~~~~~~l~~l~~ 150 (324)
T 1l8q_A 97 ----KSVDLLLLDDVQFLSGKER-------TQ---IEFFHIFNT---------LYL---LEKQIILASDRHPQKLDGVSD 150 (324)
T ss_dssp ----HTCSEEEEECGGGGTTCHH-------HH---HHHHHHHHH---------HHH---TTCEEEEEESSCGGGCTTSCH
T ss_pred ----cCCCEEEEcCcccccCChH-------HH---HHHHHHHHH---------HHH---CCCeEEEEecCChHHHHHhhh
Confidence 2489999999999764211 11 123333221 111 12244455555555 6889
Q ss_pred CCCCCCCCc--ceecC-CCHHHHHHHHHHHhhcC--CCCHHHHHHHhhcC
Q 019334 210 PLIRDGRME--KFYWQ-PNLEDILNIVHRMYEKD--GITKDEVGSIVKTF 254 (342)
Q Consensus 210 aLlRpGRfD--~~i~v-P~~~~R~~Il~~~~~~~--~~s~~di~~lvd~f 254 (342)
+|++ ||+ ..+.+ |+.++|.+|++.++... .++.+.++.++...
T Consensus 151 ~L~s--R~~~~~~i~l~~~~~e~~~il~~~~~~~~~~l~~~~l~~l~~~~ 198 (324)
T 1l8q_A 151 RLVS--RFEGGILVEIELDNKTRFKIIKEKLKEFNLELRKEVIDYLLENT 198 (324)
T ss_dssp HHHH--HHHTSEEEECCCCHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC
T ss_pred Hhhh--cccCceEEEeCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhC
Confidence 9987 886 34444 58999999999888754 46777777777665
No 49
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.66 E-value=5.8e-16 Score=131.50 Aligned_cols=147 Identities=16% Similarity=0.209 Sum_probs=101.3
Q ss_pred EEEeecCCCCCHHHHHHHHHHHh-----CCceEEeecccccccccCCcHHHHHHHHHHHHHhhh-hcCCceEEEeecccc
Q 019334 76 ILGIWGGKGQGKSFQTELIFQAM-----GIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQ-NQGKMSCLMINDIDA 149 (342)
Q Consensus 76 glgL~GPPG~GKTllaravA~~~-----g~~~i~vs~~eL~s~~~GEsEr~iR~~F~~A~e~~~-~~~~PcILfIDEIDA 149 (342)
.++|+||||||||++++++++++ ...++.++.++..+ ...+++.......... ..+.+++|||||+|.
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~ 113 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERG------IDVVRHKIKEFARTAPIGGAPFKIIFLDEADA 113 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTC------HHHHHHHHHHHHTSCCSTTCSCEEEEEETGGG
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccC------hHHHHHHHHHHhcccCCCccCceEEEEeChhh
Confidence 49999999999999999999986 56688888765432 2334444433322110 136799999999999
Q ss_pred cCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCCccCCCCCCCCcceec-CCCHHH
Q 019334 150 GLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYW-QPNLED 228 (342)
Q Consensus 150 g~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~~~LdpaLlRpGRfD~~i~-vP~~~~ 228 (342)
..+. ....|+.+++. . ..++.+|+|||.++.++++|.+ |+..+.+ .|+.++
T Consensus 114 l~~~------------~~~~l~~~l~~-------------~-~~~~~~i~~~~~~~~~~~~l~~--r~~~i~~~~~~~~~ 165 (226)
T 2chg_A 114 LTAD------------AQAALRRTMEM-------------Y-SKSCRFILSCNYVSRIIEPIQS--RCAVFRFKPVPKEA 165 (226)
T ss_dssp SCHH------------HHHHHHHHHHH-------------T-TTTEEEEEEESCGGGSCHHHHT--TSEEEECCCCCHHH
T ss_pred cCHH------------HHHHHHHHHHh-------------c-CCCCeEEEEeCChhhcCHHHHH--hCceeecCCCCHHH
Confidence 7421 12234444441 1 3568899999999999999988 7874333 379999
Q ss_pred HHHHHHHHhhcC--CCCHHHHHHHhhcCCC
Q 019334 229 ILNIVHRMYEKD--GITKDEVGSIVKTFPN 256 (342)
Q Consensus 229 R~~Il~~~~~~~--~~s~~di~~lvd~f~~ 256 (342)
..++++.++... .++.+.++.++...+|
T Consensus 166 ~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g 195 (226)
T 2chg_A 166 MKKRLLEICEKEGVKITEDGLEALIYISGG 195 (226)
T ss_dssp HHHHHHHHHHHHTCCBCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 999998877644 3677777777654444
No 50
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.66 E-value=3.9e-17 Score=163.94 Aligned_cols=155 Identities=17% Similarity=0.276 Sum_probs=101.7
Q ss_pred CCeEEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccccccCCcHH-------HHHHHHHHHHHhhhhcCCceEEEee
Q 019334 73 VPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGK-------LIRERYRTASQVVQNQGKMSCLMIN 145 (342)
Q Consensus 73 ~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~~~GEsEr-------~iR~~F~~A~e~~~~~~~PcILfID 145 (342)
.+..++|+||||||||++|+++|+++|.+++.++++++.+++.++..- .++..|..+.+.....++++|||||
T Consensus 76 ~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliID 155 (516)
T 1sxj_A 76 VFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMD 155 (516)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEEC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEE
Confidence 568999999999999999999999999999999999887654322111 1233333332111123679999999
Q ss_pred cccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCC--CCccCCCCCCCCcceec-
Q 019334 146 DIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFS--TIYAPLIRDGRMEKFYW- 222 (342)
Q Consensus 146 EIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~~--~LdpaLlRpGRfD~~i~- 222 (342)
|+|...+. .+ .....|+++++ ..+++||++||+.. .|+ +|.| +...+.
T Consensus 156 Eid~l~~~---~~------~~l~~L~~~l~----------------~~~~~iIli~~~~~~~~l~-~l~~---r~~~i~f 206 (516)
T 1sxj_A 156 EVDGMSGG---DR------GGVGQLAQFCR----------------KTSTPLILICNERNLPKMR-PFDR---VCLDIQF 206 (516)
T ss_dssp SGGGCCTT---ST------THHHHHHHHHH----------------HCSSCEEEEESCTTSSTTG-GGTT---TSEEEEC
T ss_pred CCCccchh---hH------HHHHHHHHHHH----------------hcCCCEEEEEcCCCCccch-hhHh---ceEEEEe
Confidence 99998642 11 12344555444 13566777777653 233 3443 233333
Q ss_pred -CCCHHHHHHHHHHHhhcC--CCCHHHHHHHhhcCCC
Q 019334 223 -QPNLEDILNIVHRMYEKD--GITKDEVGSIVKTFPN 256 (342)
Q Consensus 223 -vP~~~~R~~Il~~~~~~~--~~s~~di~~lvd~f~~ 256 (342)
.|+.+++.++|+.+.... .++.+.+..++....|
T Consensus 207 ~~~~~~~~~~~L~~i~~~~~~~i~~~~l~~la~~s~G 243 (516)
T 1sxj_A 207 RRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTTRG 243 (516)
T ss_dssp CCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHTTT
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 489999999998776544 4677778888766554
No 51
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.65 E-value=3.2e-16 Score=163.39 Aligned_cols=138 Identities=17% Similarity=0.178 Sum_probs=96.5
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHh----------CCceEEeecccccccccCCcHHHHHHHHHHHHHhhhhcCCceE
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQAM----------GIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSC 141 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~~----------g~~~i~vs~~eL~s~~~GEsEr~iR~~F~~A~e~~~~~~~PcI 141 (342)
+.+..++|+||||||||++|+++|..+ +.+++.++. -.+|.|+.|+.++.+|.+|.. ..|+|
T Consensus 199 ~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~---g~~~~G~~e~~l~~~~~~~~~-----~~~~i 270 (758)
T 3pxi_A 199 RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM---GTKYRGEFEDRLKKVMDEIRQ-----AGNII 270 (758)
T ss_dssp SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-------------CTTHHHHHHHHHT-----CCCCE
T ss_pred CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc---cccccchHHHHHHHHHHHHHh-----cCCEE
Confidence 556679999999999999999999997 889998888 567899999999999988863 56999
Q ss_pred EEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCC-----CCccCCCCCCC
Q 019334 142 LMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFS-----TIYAPLIRDGR 216 (342)
Q Consensus 142 LfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~~-----~LdpaLlRpGR 216 (342)
|||| + +. .....|+..++ ...+.||+|||..+ .+||+|+| |
T Consensus 271 LfiD---------~-~~------~~~~~L~~~l~----------------~~~v~~I~at~~~~~~~~~~~d~al~r--R 316 (758)
T 3pxi_A 271 LFID---------A-AI------DASNILKPSLA----------------RGELQCIGATTLDEYRKYIEKDAALER--R 316 (758)
T ss_dssp EEEC---------C---------------CCCTT----------------SSSCEEEEECCTTTTHHHHTTCSHHHH--S
T ss_pred EEEc---------C-ch------hHHHHHHHHHh----------------cCCEEEEeCCChHHHHHHhhccHHHHh--h
Confidence 9999 1 11 12223443222 34689999999999 79999999 9
Q ss_pred Ccceec-CCCHHHHHHHHHHHhhc----C--CCCHHHHHHHh
Q 019334 217 MEKFYW-QPNLEDILNIVHRMYEK----D--GITKDEVGSIV 251 (342)
Q Consensus 217 fD~~i~-vP~~~~R~~Il~~~~~~----~--~~s~~di~~lv 251 (342)
|..+.+ .|+.+++.+||+.+... . .++.+.+..++
T Consensus 317 f~~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~ 358 (758)
T 3pxi_A 317 FQPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAV 358 (758)
T ss_dssp EEEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHH
T ss_pred CcEEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 965322 49999999999976553 2 36666666555
No 52
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.65 E-value=3.7e-16 Score=155.47 Aligned_cols=138 Identities=18% Similarity=0.196 Sum_probs=96.3
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHh----------CCceEEeecccccccccCCcHHHHHHHHHHHHHhhhhcCCceE
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQAM----------GIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSC 141 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~~----------g~~~i~vs~~eL~s~~~GEsEr~iR~~F~~A~e~~~~~~~PcI 141 (342)
+.+..++|+||||||||++|+++|..+ +.+++.++.+ .+|.|+.+..++.+|..+.. ..|+|
T Consensus 199 ~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~---~~~~g~~e~~~~~~~~~~~~-----~~~~i 270 (468)
T 3pxg_A 199 RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG---TKYRGEFEDRLKKVMDEIRQ-----AGNII 270 (468)
T ss_dssp SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-------------CTTHHHHHHHHHT-----CCCCE
T ss_pred cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC---ccccchHHHHHHHHHHHHHh-----cCCeE
Confidence 455678999999999999999999997 8899999988 88999999999999988863 46999
Q ss_pred EEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCC-----CCccCCCCCCC
Q 019334 142 LMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFS-----TIYAPLIRDGR 216 (342)
Q Consensus 142 LfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~~-----~LdpaLlRpGR 216 (342)
|||| + +. .....|+..+. ...+.||+|||.++ .+||+|+| |
T Consensus 271 LfiD---------~-~~------~a~~~L~~~L~----------------~g~v~vI~at~~~e~~~~~~~~~al~~--R 316 (468)
T 3pxg_A 271 LFID---------A-AI------DASNILKPSLA----------------RGELQCIGATTLDEYRKYIEKDAALER--R 316 (468)
T ss_dssp EEEC---------C---------------CCCTT----------------SSSCEEEEECCTTTTHHHHTTCSHHHH--S
T ss_pred EEEe---------C-ch------hHHHHHHHhhc----------------CCCEEEEecCCHHHHHHHhhcCHHHHH--h
Confidence 9999 1 11 12223443222 24688999999998 79999999 9
Q ss_pred Ccceec-CCCHHHHHHHHHHHhhc----C--CCCHHHHHHHh
Q 019334 217 MEKFYW-QPNLEDILNIVHRMYEK----D--GITKDEVGSIV 251 (342)
Q Consensus 217 fD~~i~-vP~~~~R~~Il~~~~~~----~--~~s~~di~~lv 251 (342)
|..+.+ .|+.+++.+||+.+... . .++.+.+..++
T Consensus 317 f~~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~ 358 (468)
T 3pxg_A 317 FQPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAV 358 (468)
T ss_dssp EEEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHH
T ss_pred CccceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 987433 49999999999976654 2 36666665555
No 53
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.65 E-value=1e-15 Score=142.32 Aligned_cols=158 Identities=13% Similarity=0.130 Sum_probs=105.8
Q ss_pred CCCCeEEEeecCCCCCHHHHHHHHHHHh---------CCceEEeeccccccc----------------ccCCcHHHHHHH
Q 019334 71 VKVPLILGIWGGKGQGKSFQTELIFQAM---------GIEPVIMSAGELESE----------------RAGEPGKLIRER 125 (342)
Q Consensus 71 ~k~PlglgL~GPPG~GKTllaravA~~~---------g~~~i~vs~~eL~s~----------------~~GEsEr~iR~~ 125 (342)
...|..++||||||||||++++++++++ +..++.+++.+..+. ..|.+...+.+.
T Consensus 41 ~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 120 (387)
T 2v1u_A 41 GEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASAIAEAVGVRVPFTGLSVGEVYER 120 (387)
T ss_dssp SCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHH
T ss_pred CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHH
Confidence 3567899999999999999999999998 889999998764321 234444443333
Q ss_pred HHHHHHhhhhcCCceEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCC-
Q 019334 126 YRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDF- 204 (342)
Q Consensus 126 F~~A~e~~~~~~~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~- 204 (342)
+..+. +..++|+||||||+|...... ..+.+...|+..+++ .+...++.+|+|||++
T Consensus 121 l~~~l---~~~~~~~vlilDEi~~l~~~~-------~~~~~l~~l~~~~~~------------~~~~~~~~~I~~t~~~~ 178 (387)
T 2v1u_A 121 LVKRL---SRLRGIYIIVLDEIDFLPKRP-------GGQDLLYRITRINQE------------LGDRVWVSLVGITNSLG 178 (387)
T ss_dssp HHHHH---TTSCSEEEEEEETTTHHHHST-------THHHHHHHHHHGGGC------------C-----CEEEEECSCST
T ss_pred HHHHH---hccCCeEEEEEccHhhhcccC-------CCChHHHhHhhchhh------------cCCCceEEEEEEECCCc
Confidence 33332 225679999999999975321 023344455543331 0003578999999998
Q ss_pred --CCCccCCCCCCCCcc-eecC--CCHHHHHHHHHHHhhc----CCCCHHHHHHHhh
Q 019334 205 --STIYAPLIRDGRMEK-FYWQ--PNLEDILNIVHRMYEK----DGITKDEVGSIVK 252 (342)
Q Consensus 205 --~~LdpaLlRpGRfD~-~i~v--P~~~~R~~Il~~~~~~----~~~s~~di~~lvd 252 (342)
+.+++++.+ ||.. .+.+ |+.+++.+|++..+.. ..++.+.++.+..
T Consensus 179 ~~~~l~~~l~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~ 233 (387)
T 2v1u_A 179 FVENLEPRVKS--SLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAA 233 (387)
T ss_dssp TSSSSCHHHHT--TTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHH
T ss_pred hHhhhCHHHHh--cCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHH
Confidence 788888888 8865 4433 7999999999877653 3466555555543
No 54
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.64 E-value=1.7e-16 Score=158.00 Aligned_cols=145 Identities=19% Similarity=0.227 Sum_probs=106.3
Q ss_pred CeEEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccccccCCcHHHHHHHHHHHHHhhhhcCCceEEEeecccccCCC
Q 019334 74 PLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGR 153 (342)
Q Consensus 74 PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~~~GEsEr~iR~~F~~A~e~~~~~~~PcILfIDEIDAg~~r 153 (342)
+..++||||||||||++|+++|+.++.+|+.+++. +.+.+.+|+.|..|..... .++++||||||||.....
T Consensus 50 ~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~-------~~~~~~ir~~~~~a~~~~~-~~~~~iLfIDEI~~l~~~ 121 (447)
T 3pvs_A 50 LHSMILWGPPGTGKTTLAEVIARYANADVERISAV-------TSGVKEIREAIERARQNRN-AGRRTILFVDEVHRFNKS 121 (447)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETT-------TCCHHHHHHHHHHHHHHHH-TTCCEEEEEETTTCC---
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEec-------cCCHHHHHHHHHHHHHhhh-cCCCcEEEEeChhhhCHH
Confidence 36899999999999999999999999999999864 3456789999988876543 578999999999987421
Q ss_pred CCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEee--CCCCCCccCCCCCCCCcceec-CCCHHHHH
Q 019334 154 FGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTG--NDFSTIYAPLIRDGRMEKFYW-QPNLEDIL 230 (342)
Q Consensus 154 ~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatT--Nr~~~LdpaLlRpGRfD~~i~-vP~~~~R~ 230 (342)
. ...|+..++ ...|.+|++| |....++++|++ |+..+.+ .|+.+++.
T Consensus 122 ---~---------q~~LL~~le----------------~~~v~lI~att~n~~~~l~~aL~s--R~~v~~l~~l~~edi~ 171 (447)
T 3pvs_A 122 ---Q---------QDAFLPHIE----------------DGTITFIGATTENPSFELNSALLS--RARVYLLKSLSTEDIE 171 (447)
T ss_dssp ---------------CCHHHHH----------------TTSCEEEEEESSCGGGSSCHHHHT--TEEEEECCCCCHHHHH
T ss_pred ---H---------HHHHHHHHh----------------cCceEEEecCCCCcccccCHHHhC--ceeEEeeCCcCHHHHH
Confidence 1 123444433 1346667666 555689999999 7765544 48999999
Q ss_pred HHHHHHhhc-------C--CCCHHHHHHHhhcCCC
Q 019334 231 NIVHRMYEK-------D--GITKDEVGSIVKTFPN 256 (342)
Q Consensus 231 ~Il~~~~~~-------~--~~s~~di~~lvd~f~~ 256 (342)
.|++..+.. . .++.+.++.|+...+|
T Consensus 172 ~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~G 206 (447)
T 3pvs_A 172 QVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNG 206 (447)
T ss_dssp HHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCC
Confidence 999988765 2 2677777777654333
No 55
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.63 E-value=2.4e-15 Score=156.25 Aligned_cols=155 Identities=18% Similarity=0.267 Sum_probs=107.7
Q ss_pred CCe-EEEeecCCCCCHHHHHHHHHHHhCCceEEeeccccccc------------ccCCcHH-HHHHHHHHHHHhhhhcCC
Q 019334 73 VPL-ILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESE------------RAGEPGK-LIRERYRTASQVVQNQGK 138 (342)
Q Consensus 73 ~Pl-glgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~------------~~GEsEr-~iR~~F~~A~e~~~~~~~ 138 (342)
.|. .++|+||||||||++|+++|+.++.+++.++.+++..+ |+|..+. .+.+.++ +..
T Consensus 486 ~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~--------~~~ 557 (758)
T 1r6b_X 486 KPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVI--------KHP 557 (758)
T ss_dssp SCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCCSSSCCCCSCSHHHHHTTHHHHHHH--------HCS
T ss_pred CCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhHhhhcCCCCCCcCccccchHHHHHH--------hCC
Confidence 344 69999999999999999999999999999999988653 3332222 2222222 234
Q ss_pred ceEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCC-------------
Q 019334 139 MSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFS------------- 205 (342)
Q Consensus 139 PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~~------------- 205 (342)
+|||||||||..- ..+...|+.++|+....--.| ...+ ..++.||+|||...
T Consensus 558 ~~vl~lDEi~~~~------------~~~~~~Ll~~le~~~~~~~~g--~~~~-~~~~~iI~tsN~~~~~~~~~~~g~~~~ 622 (758)
T 1r6b_X 558 HAVLLLDEIEKAH------------PDVFNILLQVMDNGTLTDNNG--RKAD-FRNVVLVMTTNAGVRETERKSIGLIHQ 622 (758)
T ss_dssp SEEEEEETGGGSC------------HHHHHHHHHHHHHSEEEETTT--EEEE-CTTEEEEEEECSSCC------------
T ss_pred CcEEEEeCccccC------------HHHHHHHHHHhcCcEEEcCCC--CEEe-cCCeEEEEecCcchhhhhhcccCcccc
Confidence 7999999999853 236667888877421100011 0111 25788999999865
Q ss_pred ------------CCccCCCCCCCCcceecC--CCHHHHHHHHHHHhhc-----------CCCCHHHHHHHhh
Q 019334 206 ------------TIYAPLIRDGRMEKFYWQ--PNLEDILNIVHRMYEK-----------DGITKDEVGSIVK 252 (342)
Q Consensus 206 ------------~LdpaLlRpGRfD~~i~v--P~~~~R~~Il~~~~~~-----------~~~s~~di~~lvd 252 (342)
.++|+|+. |||.++.+ |+.+++..|++.++.. ..++.+-++.|+.
T Consensus 623 ~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~ 692 (758)
T 1r6b_X 623 DNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVSLEVSQEARNWLAE 692 (758)
T ss_dssp -----CHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHTTEEEEECHHHHHHHHH
T ss_pred chHHHHHHHHHHhcCHHHHh--hCCcceeeCCCCHHHHHHHHHHHHHHHHHHHHHCCcEEEeCHHHHHHHHH
Confidence 67788886 99987765 6899999999876651 1356777777764
No 56
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.62 E-value=1e-15 Score=130.83 Aligned_cols=156 Identities=12% Similarity=0.191 Sum_probs=100.7
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHhCCceEEeec----------------cccccccc--CCcHHHHHHHHHHHHHhh
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSA----------------GELESERA--GEPGKLIRERYRTASQVV 133 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~----------------~eL~s~~~--GEsEr~iR~~F~~A~e~~ 133 (342)
+.|..++|+||||||||+++++++++++........ .+++.... ......+++.++.+....
T Consensus 43 ~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (250)
T 1njg_A 43 RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAP 122 (250)
T ss_dssp CCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHTTCCSSEEEEETTCGGGHHHHHHHHHSCCCSC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhccCCcceEEecCcccccHHHHHHHHHHhhhch
Confidence 456789999999999999999999988653211100 01111100 123445666665443211
Q ss_pred hhcCCceEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCCccCCCC
Q 019334 134 QNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIR 213 (342)
Q Consensus 134 ~~~~~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~~~LdpaLlR 213 (342)
..++|++|||||+|.... .....|+..++. . ..++.+|+|||+++.+++++++
T Consensus 123 -~~~~~~vlviDe~~~l~~------------~~~~~l~~~l~~-------------~-~~~~~~i~~t~~~~~~~~~l~~ 175 (250)
T 1njg_A 123 -ARGRFKVYLIDEVHMLSR------------HSFNALLKTLEE-------------P-PEHVKFLLATTDPQKLPVTILS 175 (250)
T ss_dssp -SSSSSEEEEEETGGGSCH------------HHHHHHHHHHHS-------------C-CTTEEEEEEESCGGGSCHHHHT
T ss_pred -hcCCceEEEEECcccccH------------HHHHHHHHHHhc-------------C-CCceEEEEEeCChHhCCHHHHH
Confidence 146789999999998631 123345555442 1 3578899999999999999887
Q ss_pred CCCCcceec-CCCHHHHHHHHHHHhhcC--CCCHHHHHHHhhcCCC
Q 019334 214 DGRMEKFYW-QPNLEDILNIVHRMYEKD--GITKDEVGSIVKTFPN 256 (342)
Q Consensus 214 pGRfD~~i~-vP~~~~R~~Il~~~~~~~--~~s~~di~~lvd~f~~ 256 (342)
|+..+.. .|+.++..++++.++... .++.+.++.++....|
T Consensus 176 --r~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G 219 (250)
T 1njg_A 176 --RCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG 219 (250)
T ss_dssp --TSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHTT
T ss_pred --HhhhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCC
Confidence 5533222 379999999999887655 3567777777654444
No 57
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.60 E-value=1.6e-15 Score=138.04 Aligned_cols=175 Identities=16% Similarity=0.201 Sum_probs=114.2
Q ss_pred cccHHHHHHHHHHHHHHHHHhhc-CCCCCeEEEeecCCCCCHHHHHHHHHHHh-----CCceEEeecccccccccCCcHH
Q 019334 47 YIAPVFMASLLCHIVKNYIAHLL-NVKVPLILGIWGGKGQGKSFQTELIFQAM-----GIEPVIMSAGELESERAGEPGK 120 (342)
Q Consensus 47 y~~~~f~d~l~~hi~K~~l~~~~-~~k~PlglgL~GPPG~GKTllaravA~~~-----g~~~i~vs~~eL~s~~~GEsEr 120 (342)
|-|..|-+.++..-.+..+.... .-+.|. ++||||||||||++|+++|+++ +.+++.+++++... . .
T Consensus 11 ~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~--~----~ 83 (319)
T 2chq_A 11 YRPRTLDEVVGQDEVIQRLKGYVERKNIPH-LLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERG--I----D 83 (319)
T ss_dssp TSCSSGGGSCSCHHHHHHHHTTTTTTCCCC-EEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTC--T----T
T ss_pred cCCCCHHHHhCCHHHHHHHHHHHhCCCCCe-EEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccC--h----H
Confidence 44444444443333333333222 223444 9999999999999999999986 55788888876432 1 1
Q ss_pred HHHHHHHHHHHhhhh-cCCceEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEE
Q 019334 121 LIRERYRTASQVVQN-QGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIF 199 (342)
Q Consensus 121 ~iR~~F~~A~e~~~~-~~~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIa 199 (342)
.+++........... .+.++||||||+|.... .....|+..++.| ..++.+|+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~------------~~~~~L~~~le~~--------------~~~~~~i~ 137 (319)
T 2chq_A 84 VVRHKIKEFARTAPIGGAPFKIIFLDEADALTA------------DAQAALRRTMEMY--------------SKSCRFIL 137 (319)
T ss_dssp TSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCH------------HHHHTTGGGTSSS--------------SSSEEEEE
T ss_pred HHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCH------------HHHHHHHHHHHhc--------------CCCCeEEE
Confidence 233333333211111 25689999999998742 1233466555531 35788999
Q ss_pred eeCCCCCCccCCCCCCCCcceec-CCCHHHHHHHHHHHhhcCC--CCHHHHHHHhhcCCC
Q 019334 200 TGNDFSTIYAPLIRDGRMEKFYW-QPNLEDILNIVHRMYEKDG--ITKDEVGSIVKTFPN 256 (342)
Q Consensus 200 tTNr~~~LdpaLlRpGRfD~~i~-vP~~~~R~~Il~~~~~~~~--~s~~di~~lvd~f~~ 256 (342)
+||.++.++++|.+ |+..+.+ .|+.+++.++++.+++..+ ++.+.++.++...+|
T Consensus 138 ~~~~~~~l~~~l~s--r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G 195 (319)
T 2chq_A 138 SCNYVSRIIEPIQS--RCAVFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGG 195 (319)
T ss_dssp EESCGGGSCHHHHT--TCEEEECCCCCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTT
T ss_pred EeCChhhcchHHHh--hCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 99999999999988 6664333 4899999999998887665 577788888765554
No 58
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.60 E-value=8.7e-15 Score=137.23 Aligned_cols=148 Identities=16% Similarity=0.216 Sum_probs=101.2
Q ss_pred CCCCeEEEeecCCCCCHHHHHHHHHHHh-----------CCceEEeeccccc-c-----------------cccCCcHHH
Q 019334 71 VKVPLILGIWGGKGQGKSFQTELIFQAM-----------GIEPVIMSAGELE-S-----------------ERAGEPGKL 121 (342)
Q Consensus 71 ~k~PlglgL~GPPG~GKTllaravA~~~-----------g~~~i~vs~~eL~-s-----------------~~~GEsEr~ 121 (342)
-+.|..++|+||||||||++|+++++++ +.+++.+++.+.. + ...|.+.+.
T Consensus 42 ~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 121 (384)
T 2qby_B 42 NEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAVLSSLAGKLTGFSVPKHGINLGE 121 (384)
T ss_dssp TCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHH
T ss_pred CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHH
Confidence 3667899999999999999999999998 9999999976543 1 122333333
Q ss_pred -HHHHHHHHHHhhhhcCCceEEEeecccccCCCCCCCcccchhHHH-HHHHHhhcCCCCccccCccccccCCCCCccEEE
Q 019334 122 -IRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIV-VGTLMNLSDNPTRVSIGQDWRESDITNRIPIIF 199 (342)
Q Consensus 122 -iR~~F~~A~e~~~~~~~PcILfIDEIDAg~~r~~~t~~~v~~q~V-~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIa 199 (342)
+..++. + + +..++||||||+|......+ +.+ ...|+. |. .++.||+
T Consensus 122 ~~~~l~~-~---l--~~~~~vlilDEi~~l~~~~~--------~~~~l~~l~~-------------~~-----~~~~iI~ 169 (384)
T 2qby_B 122 YIDKIKN-G---T--RNIRAIIYLDEVDTLVKRRG--------GDIVLYQLLR-------------SD-----ANISVIM 169 (384)
T ss_dssp HHHHHHH-H---H--SSSCEEEEEETTHHHHHSTT--------SHHHHHHHHT-------------SS-----SCEEEEE
T ss_pred HHHHHHH-H---h--ccCCCEEEEECHHHhccCCC--------CceeHHHHhc-------------CC-----cceEEEE
Confidence 333332 2 2 22344999999999753211 123 334442 11 5789999
Q ss_pred eeCCC---CCCccCCCCCCCCcceecC--CCHHHHHHHHHHHhhc----CCCCHHHHHHHhh
Q 019334 200 TGNDF---STIYAPLIRDGRMEKFYWQ--PNLEDILNIVHRMYEK----DGITKDEVGSIVK 252 (342)
Q Consensus 200 tTNr~---~~LdpaLlRpGRfD~~i~v--P~~~~R~~Il~~~~~~----~~~s~~di~~lvd 252 (342)
|||++ +.+++++++ ||...+.+ |+.++..+||+..+.. ..++.+.++.++.
T Consensus 170 ~t~~~~~~~~l~~~l~s--r~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~ 229 (384)
T 2qby_B 170 ISNDINVRDYMEPRVLS--SLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAA 229 (384)
T ss_dssp ECSSTTTTTTSCHHHHH--TCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHH
T ss_pred EECCCchHhhhCHHHHh--cCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHH
Confidence 99998 678999887 77665543 6999999999987653 3466655555553
No 59
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.59 E-value=8.2e-15 Score=152.84 Aligned_cols=155 Identities=15% Similarity=0.206 Sum_probs=107.7
Q ss_pred CCCe-EEEeecCCCCCHHHHHHHHHHHh---CCceEEeecccccccccCCcHHHHHHHHHHHHHhhhhcCCceEEEeecc
Q 019334 72 KVPL-ILGIWGGKGQGKSFQTELIFQAM---GIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDI 147 (342)
Q Consensus 72 k~Pl-glgL~GPPG~GKTllaravA~~~---g~~~i~vs~~eL~s~~~GEsEr~iR~~F~~A~e~~~~~~~PcILfIDEI 147 (342)
..|. .++|+||||||||++|+++|..+ +.+|+.++.+++...+.+... . |..|.. +..+||||||||
T Consensus 518 ~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~~~~-~----l~~~~~----~~~~~vl~lDEi 588 (758)
T 3pxi_A 518 KRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHSTSGG-Q----LTEKVR----RKPYSVVLLDAI 588 (758)
T ss_dssp TSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCCC--------CHHHHH----HCSSSEEEEECG
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccccccccc-h----hhHHHH----hCCCeEEEEeCc
Confidence 3455 59999999999999999999998 789999999999998877622 2 223322 235799999999
Q ss_pred cccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCC------------CccCCCCCC
Q 019334 148 DAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFST------------IYAPLIRDG 215 (342)
Q Consensus 148 DAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~~~------------LdpaLlRpG 215 (342)
|..- ..+...|+.++|+-...-.+| ...+ ..++.||+|||.+.. +.|+|+.
T Consensus 589 ~~~~------------~~~~~~Ll~~le~g~~~~~~g--~~~~-~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~-- 651 (758)
T 3pxi_A 589 EKAH------------PDVFNILLQVLEDGRLTDSKG--RTVD-FRNTILIMTSNVGASEKDKVMGELKRAFRPEFIN-- 651 (758)
T ss_dssp GGSC------------HHHHHHHHHHHHHSBCC-------CCB-CTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHT--
T ss_pred cccC------------HHHHHHHHHHhccCeEEcCCC--CEec-cCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHHh--
Confidence 9762 235667888887411111111 1112 457899999998766 6677765
Q ss_pred CCcceecC--CCHHHHHHHHHHHhhc-----------CCCCHHHHHHHhh
Q 019334 216 RMEKFYWQ--PNLEDILNIVHRMYEK-----------DGITKDEVGSIVK 252 (342)
Q Consensus 216 RfD~~i~v--P~~~~R~~Il~~~~~~-----------~~~s~~di~~lvd 252 (342)
|||..+.+ |+.+++.+|++.++.. ..++.+-++.|+.
T Consensus 652 Rl~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~ 701 (758)
T 3pxi_A 652 RIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAE 701 (758)
T ss_dssp TSSEEEECC--CHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHG
T ss_pred hCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEECHHHHHHHHH
Confidence 99986654 6999999999875542 1356666677664
No 60
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.59 E-value=7e-15 Score=127.82 Aligned_cols=156 Identities=14% Similarity=0.167 Sum_probs=102.5
Q ss_pred HHHHHHHHHhhcCCCCCeEEEeecCCCCCHHHHHHHHHHHhC---CceEEeecccccccccCCcHHHHHHHHHHHHHhhh
Q 019334 58 CHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMG---IEPVIMSAGELESERAGEPGKLIRERYRTASQVVQ 134 (342)
Q Consensus 58 ~hi~K~~l~~~~~~k~PlglgL~GPPG~GKTllaravA~~~g---~~~i~vs~~eL~s~~~GEsEr~iR~~F~~A~e~~~ 134 (342)
...++.+.. ...+..++|+||||||||++|+++|++++ .+++.++.+++.+... +.+ +.
T Consensus 40 ~~~l~~~~~----~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~~~~--------~~~----~~-- 101 (242)
T 3bos_A 40 IGALKSAAS----GDGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHASIST--------ALL----EG-- 101 (242)
T ss_dssp HHHHHHHHH----TCSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGGGSCG--------GGG----TT--
T ss_pred HHHHHHHHh----CCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHH--------HHH----Hh--
Confidence 344555555 23578899999999999999999998875 7888899888776431 111 11
Q ss_pred hcCCceEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCC----CCccC
Q 019334 135 NQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFS----TIYAP 210 (342)
Q Consensus 135 ~~~~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~~----~Ldpa 210 (342)
..+|++|||||+|...... .....|+.+++. .. . ...+.+|+|||... .++++
T Consensus 102 -~~~~~vliiDe~~~~~~~~----------~~~~~l~~~l~~---------~~-~--~~~~~ii~~~~~~~~~~~~~~~~ 158 (242)
T 3bos_A 102 -LEQFDLICIDDVDAVAGHP----------LWEEAIFDLYNR---------VA-E--QKRGSLIVSASASPMEAGFVLPD 158 (242)
T ss_dssp -GGGSSEEEEETGGGGTTCH----------HHHHHHHHHHHH---------HH-H--HCSCEEEEEESSCTTTTTCCCHH
T ss_pred -ccCCCEEEEeccccccCCH----------HHHHHHHHHHHH---------HH-H--cCCCeEEEEcCCCHHHHHHhhhh
Confidence 2358999999999975321 012234444331 00 0 12333666666433 45677
Q ss_pred CCCCCCCc--ceecC--CCHHHHHHHHHHHhhcCC--CCHHHHHHHhhcCCC
Q 019334 211 LIRDGRME--KFYWQ--PNLEDILNIVHRMYEKDG--ITKDEVGSIVKTFPN 256 (342)
Q Consensus 211 LlRpGRfD--~~i~v--P~~~~R~~Il~~~~~~~~--~s~~di~~lvd~f~~ 256 (342)
|.+ ||+ ..+.+ |+.+++.+|++.+++..+ ++.+.++.++..++|
T Consensus 159 l~~--r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g 208 (242)
T 3bos_A 159 LVS--RMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMAR 208 (242)
T ss_dssp HHH--HHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTT
T ss_pred hhh--HhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC
Confidence 777 664 44543 899999999998887554 678888888876655
No 61
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.59 E-value=3.4e-15 Score=143.74 Aligned_cols=138 Identities=10% Similarity=0.108 Sum_probs=99.7
Q ss_pred CCCCeEEEeecCCCCCHHHHHHHHHHHh----------CCceEEeeccccccc----------c------cCCcHHHHHH
Q 019334 71 VKVPLILGIWGGKGQGKSFQTELIFQAM----------GIEPVIMSAGELESE----------R------AGEPGKLIRE 124 (342)
Q Consensus 71 ~k~PlglgL~GPPG~GKTllaravA~~~----------g~~~i~vs~~eL~s~----------~------~GEsEr~iR~ 124 (342)
-..|..++||||||||||++++++++++ ++.++.+++..+.+. . .|++.+.+++
T Consensus 42 ~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~ 121 (318)
T 3te6_A 42 SSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKENLCGDISLEALNF 121 (318)
T ss_dssp TTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC--CCCCHHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCCCCchHHHHHHHH
Confidence 4678899999999999999999999999 467889998765442 2 3567888999
Q ss_pred HHHHHHHhhhhcCCceEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCC
Q 019334 125 RYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDF 204 (342)
Q Consensus 125 ~F~~A~e~~~~~~~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~ 204 (342)
.|....+ ..++|+||||||||.+. + |.+.-.|++ |...+ ..++.||+++|..
T Consensus 122 ~f~~~~~---~~~~~~ii~lDE~d~l~------~-----q~~L~~l~~-------------~~~~~-~s~~~vI~i~n~~ 173 (318)
T 3te6_A 122 YITNVPK---AKKRKTLILIQNPENLL------S-----EKILQYFEK-------------WISSK-NSKLSIICVGGHN 173 (318)
T ss_dssp HHHHSCG---GGSCEEEEEEECCSSSC------C-----THHHHHHHH-------------HHHCS-SCCEEEEEECCSS
T ss_pred HHHHhhh---ccCCceEEEEecHHHhh------c-----chHHHHHHh-------------ccccc-CCcEEEEEEecCc
Confidence 9976421 14679999999999987 1 234444443 33333 5689999999998
Q ss_pred CCCc----cCCCCCCCCc-c-eecC-CCHHHHHHHHHHHhh
Q 019334 205 STIY----APLIRDGRME-K-FYWQ-PNLEDILNIVHRMYE 238 (342)
Q Consensus 205 ~~Ld----paLlRpGRfD-~-~i~v-P~~~~R~~Il~~~~~ 238 (342)
+..+ +++.. ||. + +.+. ++.++-.+|++..+.
T Consensus 174 d~~~~~L~~~v~S--R~~~~~i~F~pYt~~el~~Il~~Rl~ 212 (318)
T 3te6_A 174 VTIREQINIMPSL--KAHFTEIKLNKVDKNELQQMIITRLK 212 (318)
T ss_dssp CCCHHHHHTCHHH--HTTEEEEECCCCCHHHHHHHHHHHHH
T ss_pred ccchhhcchhhhc--cCCceEEEeCCCCHHHHHHHHHHHHH
Confidence 7544 33333 675 2 3343 599999999986554
No 62
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.58 E-value=5.7e-15 Score=146.02 Aligned_cols=168 Identities=15% Similarity=0.223 Sum_probs=108.0
Q ss_pred HHHHHHHHHHHhhcCCCCCeEEEeecCCCCCHHHHHHHHHHHh-----CCceEEeecccccccccCCcHHHHHHHHHHHH
Q 019334 56 LLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAM-----GIEPVIMSAGELESERAGEPGKLIRERYRTAS 130 (342)
Q Consensus 56 l~~hi~K~~l~~~~~~k~PlglgL~GPPG~GKTllaravA~~~-----g~~~i~vs~~eL~s~~~GEsEr~iR~~F~~A~ 130 (342)
.+...++.+.. .++ + +..++||||||||||++++++|+++ +.+++.+++.++.+.+.+.-.....+.|..+.
T Consensus 115 ~a~~~~~~~a~-~~~-~-~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (440)
T 2z4s_A 115 FAYHAALEVAK-HPG-R-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKY 191 (440)
T ss_dssp HHHHHHHHHHH-STT-S-SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHh-CCC-C-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHcccHHHHHHHh
Confidence 34455555554 333 2 7789999999999999999999998 89999999988765443222211112332221
Q ss_pred HhhhhcCCceEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCC-CCC---
Q 019334 131 QVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGND-FST--- 206 (342)
Q Consensus 131 e~~~~~~~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr-~~~--- 206 (342)
...|+||||||||...+... .| ..|+..++. .. ..+..||+|||+ +..
T Consensus 192 -----~~~~~vL~IDEi~~l~~~~~-------~q---~~l~~~l~~---------l~----~~~~~iIitt~~~~~~l~~ 243 (440)
T 2z4s_A 192 -----RKKVDILLIDDVQFLIGKTG-------VQ---TELFHTFNE---------LH----DSGKQIVICSDREPQKLSE 243 (440)
T ss_dssp -----TTTCSEEEEECGGGGSSCHH-------HH---HHHHHHHHH---------HH----TTTCEEEEEESSCGGGCSS
T ss_pred -----cCCCCEEEEeCcccccCChH-------HH---HHHHHHHHH---------HH----HCCCeEEEEECCCHHHHHH
Confidence 12699999999999874211 11 123333221 00 123456666666 443
Q ss_pred CccCCCCCCCCc--ceec--CCCHHHHHHHHHHHhhcCC--CCHHHHHHHhhcCCC
Q 019334 207 IYAPLIRDGRME--KFYW--QPNLEDILNIVHRMYEKDG--ITKDEVGSIVKTFPN 256 (342)
Q Consensus 207 LdpaLlRpGRfD--~~i~--vP~~~~R~~Il~~~~~~~~--~s~~di~~lvd~f~~ 256 (342)
++++|++ ||+ ..+. .|+.++|.+||+..+...+ ++.+-++.++...+|
T Consensus 244 l~~~L~s--R~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e~l~~la~~~~g 297 (440)
T 2z4s_A 244 FQDRLVS--RFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEEVLNFVAENVDD 297 (440)
T ss_dssp CCHHHHH--HHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHCCS
T ss_pred HHHHHHh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC
Confidence 7888888 786 4444 4999999999998776443 666667777765555
No 63
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.55 E-value=7.2e-15 Score=136.24 Aligned_cols=146 Identities=12% Similarity=0.180 Sum_probs=101.1
Q ss_pred EEeecCCCCCHHHHHHHHHHHhC------CceEEeecccccccccCCcHHHHHHHHHHHHHh-----------hhhcCCc
Q 019334 77 LGIWGGKGQGKSFQTELIFQAMG------IEPVIMSAGELESERAGEPGKLIRERYRTASQV-----------VQNQGKM 139 (342)
Q Consensus 77 lgL~GPPG~GKTllaravA~~~g------~~~i~vs~~eL~s~~~GEsEr~iR~~F~~A~e~-----------~~~~~~P 139 (342)
++||||||||||++|+++|++++ ..++.+++++.. +...+++.+...... ....+.+
T Consensus 61 ~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDER------GISIVREKVKNFARLTVSKPSKHDLENYPCPPY 134 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCC------CHHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSC
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEcccccc------chHHHHHHHHHHhhhcccccchhhcccCCCCCc
Confidence 99999999999999999999864 457778877642 234455544333221 0002456
Q ss_pred eEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCCccCCCCCCCCcc
Q 019334 140 SCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEK 219 (342)
Q Consensus 140 cILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~~~LdpaLlRpGRfD~ 219 (342)
.||||||+|...+. ....|+..++. . ...+.+|++||.++.++|+|++ |+..
T Consensus 135 ~vliiDE~~~l~~~------------~~~~Ll~~le~-------------~-~~~~~~il~~~~~~~l~~~l~s--R~~~ 186 (353)
T 1sxj_D 135 KIIILDEADSMTAD------------AQSALRRTMET-------------Y-SGVTRFCLICNYVTRIIDPLAS--QCSK 186 (353)
T ss_dssp EEEEETTGGGSCHH------------HHHHHHHHHHH-------------T-TTTEEEEEEESCGGGSCHHHHH--HSEE
T ss_pred eEEEEECCCccCHH------------HHHHHHHHHHh-------------c-CCCceEEEEeCchhhCcchhhc--cCce
Confidence 79999999987521 12345554442 1 3456788899999999999988 7775
Q ss_pred eec-CCCHHHHHHHHHHHhhcCC--CCHHHHHHHhhcCCC
Q 019334 220 FYW-QPNLEDILNIVHRMYEKDG--ITKDEVGSIVKTFPN 256 (342)
Q Consensus 220 ~i~-vP~~~~R~~Il~~~~~~~~--~s~~di~~lvd~f~~ 256 (342)
+.+ .|+.++...+++..+...+ ++.+.++.++....|
T Consensus 187 i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G 226 (353)
T 1sxj_D 187 FRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAG 226 (353)
T ss_dssp EECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSS
T ss_pred EEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC
Confidence 434 4799999999998876655 677777777764444
No 64
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.54 E-value=1.7e-14 Score=133.74 Aligned_cols=155 Identities=15% Similarity=0.256 Sum_probs=102.2
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHh------CCceEEeecccccc------c----------ccCCcHHHHHHHHHHH
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQAM------GIEPVIMSAGELES------E----------RAGEPGKLIRERYRTA 129 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~~------g~~~i~vs~~eL~s------~----------~~GEsEr~iR~~F~~A 129 (342)
..+..++|+||||||||++++++++++ +..++.+++.+..+ . ..|.+...+.+.+..+
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~ 122 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKA 122 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHH
Confidence 567899999999999999999999998 89999999764322 1 1333343333333233
Q ss_pred HHhhhhcCCceEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCC---CC
Q 019334 130 SQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDF---ST 206 (342)
Q Consensus 130 ~e~~~~~~~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~---~~ 206 (342)
....+.|+||||||+|.+....+ +.+...|+..+++ .. ..++.+|++||++ +.
T Consensus 123 ---l~~~~~~~vlilDE~~~l~~~~~--------~~~l~~l~~~~~~------------~~-~~~~~~I~~~~~~~~~~~ 178 (386)
T 2qby_A 123 ---VRDYGSQVVIVLDEIDAFVKKYN--------DDILYKLSRINSE------------VN-KSKISFIGITNDVKFVDL 178 (386)
T ss_dssp ---HHTCCSCEEEEEETHHHHHHSSC--------STHHHHHHHHHHS------------CC-C--EEEEEEESCGGGGGG
T ss_pred ---HhccCCeEEEEEcChhhhhccCc--------CHHHHHHhhchhh------------cC-CCeEEEEEEECCCChHhh
Confidence 22246699999999999864321 1234455554441 01 4578999999988 46
Q ss_pred CccCCCCCCCCcc-eec--CCCHHHHHHHHHHHhhc----CCCCHHHHHHHhh
Q 019334 207 IYAPLIRDGRMEK-FYW--QPNLEDILNIVHRMYEK----DGITKDEVGSIVK 252 (342)
Q Consensus 207 LdpaLlRpGRfD~-~i~--vP~~~~R~~Il~~~~~~----~~~s~~di~~lvd 252 (342)
+++.+.+ ||.. .+. .|+.++..+|++..+.. ..++.+.++.+..
T Consensus 179 ~~~~~~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~ 229 (386)
T 2qby_A 179 LDPRVKS--SLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAA 229 (386)
T ss_dssp CTTHHHH--TTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHH
T ss_pred hCHHHhc--cCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHH
Confidence 7777777 6653 443 36999999999876542 3566665555543
No 65
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.53 E-value=9e-15 Score=133.59 Aligned_cols=150 Identities=18% Similarity=0.222 Sum_probs=100.5
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHhC-----CceEEeecccccccccCCcHHHHHHHHHHHHHhhhh-cCCceEEEee
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQAMG-----IEPVIMSAGELESERAGEPGKLIRERYRTASQVVQN-QGKMSCLMIN 145 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~~g-----~~~i~vs~~eL~s~~~GEsEr~iR~~F~~A~e~~~~-~~~PcILfID 145 (342)
+.|. ++||||||||||++|+++|+++. ..++.+++++..+ ...+++........... .+.++|||||
T Consensus 45 ~~~~-~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~vliiD 117 (327)
T 1iqp_A 45 SMPH-LLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERG------INVIREKVKEFARTKPIGGASFKIIFLD 117 (327)
T ss_dssp CCCE-EEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHH------HHTTHHHHHHHHHSCCGGGCSCEEEEEE
T ss_pred CCCe-EEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCc------hHHHHHHHHHHHhhCCcCCCCCeEEEEe
Confidence 3444 99999999999999999999863 3477777765422 12334433332221111 2678999999
Q ss_pred cccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCCccCCCCCCCCcceec-CC
Q 019334 146 DIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYW-QP 224 (342)
Q Consensus 146 EIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~~~LdpaLlRpGRfD~~i~-vP 224 (342)
|+|...+. ....|+..++. . ..++.+|+|||.++.++++|.+ |+..+.+ .|
T Consensus 118 e~~~l~~~------------~~~~L~~~le~-------------~-~~~~~~i~~~~~~~~l~~~l~s--r~~~~~~~~l 169 (327)
T 1iqp_A 118 EADALTQD------------AQQALRRTMEM-------------F-SSNVRFILSCNYSSKIIEPIQS--RCAIFRFRPL 169 (327)
T ss_dssp TGGGSCHH------------HHHHHHHHHHH-------------T-TTTEEEEEEESCGGGSCHHHHH--TEEEEECCCC
T ss_pred CCCcCCHH------------HHHHHHHHHHh-------------c-CCCCeEEEEeCCccccCHHHHh--hCcEEEecCC
Confidence 99987421 12345544442 1 3568899999999999999887 6664333 37
Q ss_pred CHHHHHHHHHHHhhcCC--CCHHHHHHHhhcCCC
Q 019334 225 NLEDILNIVHRMYEKDG--ITKDEVGSIVKTFPN 256 (342)
Q Consensus 225 ~~~~R~~Il~~~~~~~~--~s~~di~~lvd~f~~ 256 (342)
+.++..++++.+++..+ ++.+.++.++....|
T Consensus 170 ~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g 203 (327)
T 1iqp_A 170 RDEDIAKRLRYIAENEGLELTEEGLQAILYIAEG 203 (327)
T ss_dssp CHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHCCC
Confidence 89999999988877665 577777766654444
No 66
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.53 E-value=3.8e-14 Score=132.24 Aligned_cols=138 Identities=14% Similarity=0.177 Sum_probs=88.6
Q ss_pred eEEEeecCCCCCHHHHHHHHHHHhCCceEEeecc------cccccccCCcHHHHHHHHHHHHHhhhhcCC---ceEEEee
Q 019334 75 LILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAG------ELESERAGEPGKLIRERYRTASQVVQNQGK---MSCLMIN 145 (342)
Q Consensus 75 lglgL~GPPG~GKTllaravA~~~g~~~i~vs~~------eL~s~~~GEsEr~iR~~F~~A~e~~~~~~~---PcILfID 145 (342)
..++||||||||||++|+++|+.++.+++.++.. ++.....-.... ..| .. +.. .+|||||
T Consensus 47 ~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l~g~~~~~~~~---~~~----~~---~~g~l~~~vl~iD 116 (331)
T 2r44_A 47 GHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDLIGTMIYNQHK---GNF----EV---KKGPVFSNFILAD 116 (331)
T ss_dssp CCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHHEEEEEETTT---TEE----EE---EECTTCSSEEEEE
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhcCCceeecCCC---Cce----Ee---ccCcccccEEEEE
Confidence 5799999999999999999999999999988863 222211100000 000 00 112 3899999
Q ss_pred cccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCC-----CCccCCCCCCCCcce
Q 019334 146 DIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFS-----TIYAPLIRDGRMEKF 220 (342)
Q Consensus 146 EIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~~-----~LdpaLlRpGRfD~~ 220 (342)
|||...+ .+...|++.++.- .+.+.|.... ...++.||+|+|..+ .|+++|++ ||+..
T Consensus 117 Ei~~~~~------------~~~~~Ll~~l~~~-~~~~~g~~~~--~~~~~~viat~np~~~~~~~~l~~~l~~--Rf~~~ 179 (331)
T 2r44_A 117 EVNRSPA------------KVQSALLECMQEK-QVTIGDTTYP--LDNPFLVLATQNPVEQEGTYPLPEAQVD--RFMMK 179 (331)
T ss_dssp TGGGSCH------------HHHHHHHHHHHHS-EEEETTEEEE--CCSSCEEEEEECTTCCSCCCCCCHHHHT--TSSEE
T ss_pred ccccCCH------------HHHHHHHHHHhcC-ceeeCCEEEE--CCCCEEEEEecCCCcccCcccCCHHHHh--heeEE
Confidence 9998532 1333455555421 1233332211 134677888888443 38999998 99865
Q ss_pred ecC--CCHHHHHHHHHHHhhc
Q 019334 221 YWQ--PNLEDILNIVHRMYEK 239 (342)
Q Consensus 221 i~v--P~~~~R~~Il~~~~~~ 239 (342)
+.+ |+.++|.+|++.+...
T Consensus 180 i~i~~p~~~~~~~il~~~~~~ 200 (331)
T 2r44_A 180 IHLTYLDKESELEVMRRVSNM 200 (331)
T ss_dssp EECCCCCHHHHHHHHHHHHCT
T ss_pred EEcCCCCHHHHHHHHHhcccc
Confidence 554 9999999999987764
No 67
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.53 E-value=8.4e-14 Score=130.13 Aligned_cols=152 Identities=13% Similarity=0.121 Sum_probs=104.3
Q ss_pred EEEeecCCCCCHHHHHHHHHHHh----CCceEEeeccccccc----------------ccCCcHHHHHHHHHHHHHhhhh
Q 019334 76 ILGIWGGKGQGKSFQTELIFQAM----GIEPVIMSAGELESE----------------RAGEPGKLIRERYRTASQVVQN 135 (342)
Q Consensus 76 glgL~GPPG~GKTllaravA~~~----g~~~i~vs~~eL~s~----------------~~GEsEr~iR~~F~~A~e~~~~ 135 (342)
.++|+||||||||++++++++++ +..++.+++.+..+. ..|.+...+.+.+.... ..
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l---~~ 122 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHL---RE 122 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHH---HH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHH---hh
Confidence 89999999999999999999999 788899987654321 12333444433333332 22
Q ss_pred cCCceEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCC---CCCccCCC
Q 019334 136 QGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDF---STIYAPLI 212 (342)
Q Consensus 136 ~~~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~---~~LdpaLl 212 (342)
.+.|+||||||+|.+- ..+...|+.++++ +.... ..++.||++||++ +.+++.+.
T Consensus 123 ~~~~~vlilDE~~~l~------------~~~~~~L~~~~~~---------~~~~~-~~~~~iI~~~~~~~~~~~l~~~~~ 180 (389)
T 1fnn_A 123 RDLYMFLVLDDAFNLA------------PDILSTFIRLGQE---------ADKLG-AFRIALVIVGHNDAVLNNLDPSTR 180 (389)
T ss_dssp TTCCEEEEEETGGGSC------------HHHHHHHHHHTTC---------HHHHS-SCCEEEEEEESSTHHHHTSCHHHH
T ss_pred cCCeEEEEEECccccc------------hHHHHHHHHHHHh---------CCCCC-cCCEEEEEEECCchHHHHhCHHhh
Confidence 4679999999999981 1234456655542 11100 2579999999998 77888876
Q ss_pred CCCCCcc-eecC--CCHHHHHHHHHHHhhc----CCCCHHHHHHHhhcC
Q 019334 213 RDGRMEK-FYWQ--PNLEDILNIVHRMYEK----DGITKDEVGSIVKTF 254 (342)
Q Consensus 213 RpGRfD~-~i~v--P~~~~R~~Il~~~~~~----~~~s~~di~~lvd~f 254 (342)
+ ||.. .+.+ ++.++..+|++..+.. ..++.+.++.+....
T Consensus 181 ~--r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~ 227 (389)
T 1fnn_A 181 G--IMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADIT 227 (389)
T ss_dssp H--HHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHH
T ss_pred h--cCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHH
Confidence 6 7774 3443 5889999999876653 457887777777644
No 68
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.52 E-value=5.8e-15 Score=137.03 Aligned_cols=146 Identities=13% Similarity=0.141 Sum_probs=84.0
Q ss_pred eEEEeecCCCCCHHHHHHHHHHHhCC-------ceEEeec------------------ccccccccCCcHHHH------H
Q 019334 75 LILGIWGGKGQGKSFQTELIFQAMGI-------EPVIMSA------------------GELESERAGEPGKLI------R 123 (342)
Q Consensus 75 lglgL~GPPG~GKTllaravA~~~g~-------~~i~vs~------------------~eL~s~~~GEsEr~i------R 123 (342)
..++||||||||||++|+++|+.++- ++-.... ..++....|.++..+ +
T Consensus 46 ~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~ 125 (350)
T 1g8p_A 46 GGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVEMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGALDIE 125 (350)
T ss_dssp CCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSGGGSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEECHH
T ss_pred ceEEEECCCCccHHHHHHHHHHhCccccccccccccccccccccchhhhhccccccCCCcccccCCCcchhhheeechhh
Confidence 45999999999999999999999872 2110000 011111133333322 2
Q ss_pred HHHHHHHHhhh----hcCCceEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCC-CccccCccccccCCCCCccEE
Q 019334 124 ERYRTASQVVQ----NQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNP-TRVSIGQDWRESDITNRIPII 198 (342)
Q Consensus 124 ~~F~~A~e~~~----~~~~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p-~~v~l~g~~~~~~~~~~V~VI 198 (342)
..|..+..... ....++||||||||...+ .+...|+..++.. ..+...|... ....++.+|
T Consensus 126 ~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~------------~~~~~Ll~~le~~~~~~~~~g~~~--~~~~~~~li 191 (350)
T 1g8p_A 126 RAISKGEKAFEPGLLARANRGYLYIDECNLLED------------HIVDLLLDVAQSGENVVERDGLSI--RHPARFVLV 191 (350)
T ss_dssp HHHHHCGGGEECCHHHHHTTEEEEETTGGGSCH------------HHHHHHHHHHHHSEEEECCTTCCE--EEECCEEEE
T ss_pred hhhcCCceeecCceeeecCCCEEEEeChhhCCH------------HHHHHHHHHHhcCceEEEecceEE--eeCCceEEE
Confidence 23322211000 012379999999998742 1233455544421 0111112110 112378899
Q ss_pred EeeCCCC-CCccCCCCCCCCcceecC--C-CHHHHHHHHHHH
Q 019334 199 FTGNDFS-TIYAPLIRDGRMEKFYWQ--P-NLEDILNIVHRM 236 (342)
Q Consensus 199 atTNr~~-~LdpaLlRpGRfD~~i~v--P-~~~~R~~Il~~~ 236 (342)
+|||..+ .++++|++ ||+..+.+ | +.+.|.+|++..
T Consensus 192 ~~~n~~~~~l~~~L~~--R~~~~~~l~~~~~~~~~~~il~~~ 231 (350)
T 1g8p_A 192 GSGNPEEGDLRPQLLD--RFGLSVEVLSPRDVETRVEVIRRR 231 (350)
T ss_dssp EEECSCSCCCCHHHHT--TCSEEEECCCCCSHHHHHHHHHHH
T ss_pred EEeCCCCCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHHHH
Confidence 9999755 89999999 99986654 5 788888999764
No 69
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.51 E-value=2e-14 Score=120.57 Aligned_cols=103 Identities=13% Similarity=0.097 Sum_probs=74.7
Q ss_pred CCeEEEeecCCCCCHHHHHHHHHHHh---CCceEEeecccccccccCCcHHHHHHHHHHHHHhhhhcCCceEEEeecccc
Q 019334 73 VPLILGIWGGKGQGKSFQTELIFQAM---GIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDA 149 (342)
Q Consensus 73 ~PlglgL~GPPG~GKTllaravA~~~---g~~~i~vs~~eL~s~~~GEsEr~iR~~F~~A~e~~~~~~~PcILfIDEIDA 149 (342)
.+.-|+|+||||||||++|++++... +.+|+ ++++++.+. ..+...|..|. .++|||||||.
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~------~~~~~~~~~a~--------~g~l~ldei~~ 87 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA------PQLNDFIALAQ--------GGTLVLSHPEH 87 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS------SCHHHHHHHHT--------TSCEEEECGGG
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc------hhhhcHHHHcC--------CcEEEEcChHH
Confidence 44558999999999999999999987 78999 999988765 23445565552 68999999998
Q ss_pred cCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCCccCCCCCCCCcc
Q 019334 150 GLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEK 219 (342)
Q Consensus 150 g~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~~~LdpaLlRpGRfD~ 219 (342)
... .+...|+..+.. . ..++.||+|||++- ..+.+.|+|++
T Consensus 88 l~~------------~~q~~Ll~~l~~-------------~-~~~~~~I~~t~~~~---~~~~~~~~~~~ 128 (145)
T 3n70_A 88 LTR------------EQQYHLVQLQSQ-------------E-HRPFRLIGIGDTSL---VELAASNHIIA 128 (145)
T ss_dssp SCH------------HHHHHHHHHHHS-------------S-SCSSCEEEEESSCH---HHHHHHSCCCH
T ss_pred CCH------------HHHHHHHHHHhh-------------c-CCCEEEEEECCcCH---HHHHHcCCCCH
Confidence 742 123345554421 1 35688999999842 35777888875
No 70
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.50 E-value=3.8e-14 Score=129.25 Aligned_cols=151 Identities=17% Similarity=0.224 Sum_probs=104.7
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHh-----CCceEEeecccccccccCCcHHHHHHHHHHHHHhh-hh-cCCceEEEe
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQAM-----GIEPVIMSAGELESERAGEPGKLIRERYRTASQVV-QN-QGKMSCLMI 144 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~~-----g~~~i~vs~~eL~s~~~GEsEr~iR~~F~~A~e~~-~~-~~~PcILfI 144 (342)
+.|. ++||||||+|||++|+++|+++ +.+++.+++++.. +...+|+.+....... .. .++++||||
T Consensus 41 ~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~------~~~~i~~~~~~~~~~~~~~~~~~~~viii 113 (323)
T 1sxj_B 41 NMPH-MIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDR------GIDVVRNQIKHFAQKKLHLPPGKHKIVIL 113 (323)
T ss_dssp CCCC-EEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCC------SHHHHHTHHHHHHHBCCCCCTTCCEEEEE
T ss_pred CCCe-EEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCcccc------ChHHHHHHHHHHHhccccCCCCCceEEEE
Confidence 4555 9999999999999999999986 4568888876532 2456777766554211 11 245899999
Q ss_pred ecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCCccCCCCCCCCcceec-C
Q 019334 145 NDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYW-Q 223 (342)
Q Consensus 145 DEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~~~LdpaLlRpGRfD~~i~-v 223 (342)
||+|..... ....|+..++. . ..++.+|++||.++.++++++. |+..+.+ .
T Consensus 114 De~~~l~~~------------~~~~L~~~le~-------------~-~~~~~~il~~~~~~~l~~~l~s--r~~~i~~~~ 165 (323)
T 1sxj_B 114 DEADSMTAG------------AQQALRRTMEL-------------Y-SNSTRFAFACNQSNKIIEPLQS--QCAILRYSK 165 (323)
T ss_dssp ESGGGSCHH------------HHHTTHHHHHH-------------T-TTTEEEEEEESCGGGSCHHHHT--TSEEEECCC
T ss_pred ECcccCCHH------------HHHHHHHHHhc-------------c-CCCceEEEEeCChhhchhHHHh--hceEEeecC
Confidence 999987421 12234444332 1 3567888999999999999987 5554333 4
Q ss_pred CCHHHHHHHHHHHhhcCC--CCHHHHHHHhhcCCCC
Q 019334 224 PNLEDILNIVHRMYEKDG--ITKDEVGSIVKTFPNQ 257 (342)
Q Consensus 224 P~~~~R~~Il~~~~~~~~--~s~~di~~lvd~f~~~ 257 (342)
|+.++..++++.+++..+ ++.+.++.++....|.
T Consensus 166 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~ 201 (323)
T 1sxj_B 166 LSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGD 201 (323)
T ss_dssp CCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC
Confidence 899999999988776544 6677777777655443
No 71
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.50 E-value=8.5e-15 Score=122.75 Aligned_cols=101 Identities=12% Similarity=-0.040 Sum_probs=72.1
Q ss_pred CCeEEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccccccCCcHHHHHHHHHHHHHhhhhcCCceEEEeecccccCC
Q 019334 73 VPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLG 152 (342)
Q Consensus 73 ~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~~~GEsEr~iR~~F~~A~e~~~~~~~PcILfIDEIDAg~~ 152 (342)
.+..|+||||||||||++|++++...+ +++.++++++.+.+ ++..|+.| ..++|||||||....
T Consensus 26 ~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~~-------~~~~~~~a--------~~~~l~lDei~~l~~ 89 (143)
T 3co5_A 26 RTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLIDM-------PMELLQKA--------EGGVLYVGDIAQYSR 89 (143)
T ss_dssp CSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHHC-------HHHHHHHT--------TTSEEEEEECTTCCH
T ss_pred CCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChHh-------hhhHHHhC--------CCCeEEEeChHHCCH
Confidence 455699999999999999999999988 99999999887544 45566544 268999999998742
Q ss_pred CCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCCccCCCCCCCCcc
Q 019334 153 RFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEK 219 (342)
Q Consensus 153 r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~~~LdpaLlRpGRfD~ 219 (342)
.+...|+..++. ....++.||+|||++. ..+ +.| |++
T Consensus 90 ------------~~q~~Ll~~l~~-------------~~~~~~~iI~~tn~~~---~~~-~~~-~~~ 126 (143)
T 3co5_A 90 ------------NIQTGITFIIGK-------------AERCRVRVIASCSYAA---GSD-GIS-CEE 126 (143)
T ss_dssp ------------HHHHHHHHHHHH-------------HTTTTCEEEEEEEECT---TTC---C-HHH
T ss_pred ------------HHHHHHHHHHHh-------------CCCCCEEEEEecCCCH---HHH-HhC-ccH
Confidence 123345555441 1135688999999862 245 777 765
No 72
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.49 E-value=1.1e-12 Score=124.29 Aligned_cols=159 Identities=14% Similarity=0.100 Sum_probs=103.6
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccccccCCcHHHHHHHHHHHHHhhhhcCCceEEEeecccccC
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGL 151 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~~~GEsEr~iR~~F~~A~e~~~~~~~PcILfIDEIDAg~ 151 (342)
++|..++|+||||||||++++++|+++++++...+++.+.. .+.++..+.. ..+.+|+||||+|...
T Consensus 49 ~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~------~~~l~~~~~~-------~~~~~v~~iDE~~~l~ 115 (334)
T 1in4_A 49 EVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVK------QGDMAAILTS-------LERGDVLFIDEIHRLN 115 (334)
T ss_dssp CCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCS------HHHHHHHHHH-------CCTTCEEEEETGGGCC
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcC------HHHHHHHHHH-------ccCCCEEEEcchhhcC
Confidence 46678999999999999999999999999988887765542 3344444421 1347899999999875
Q ss_pred CCCCCCcccchhHHHHHHHHhhcCCCC-ccccCcccccc---CCCCCccEEEeeCCCCCCccCCCCCCCCcceec--CCC
Q 019334 152 GRFGNTQMTVNNQIVVGTLMNLSDNPT-RVSIGQDWRES---DITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYW--QPN 225 (342)
Q Consensus 152 ~r~~~t~~~v~~q~V~~tLl~llD~p~-~v~l~g~~~~~---~~~~~V~VIatTNr~~~LdpaLlRpGRfD~~i~--vP~ 225 (342)
+ ++ + ..|+..+.... .+.++...... ....++.+|.+||++..|++++++ ||...+. .|+
T Consensus 116 ~-------~~--~---e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~~~~~Ls~~l~s--R~~l~~~Ld~~~ 181 (334)
T 1in4_A 116 K-------AV--E---ELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLRS--RFGIILELDFYT 181 (334)
T ss_dssp H-------HH--H---HHHHHHHHTSCCCC---------------CCCEEEEEESCGGGSCHHHHT--TCSEEEECCCCC
T ss_pred H-------HH--H---HHHHHHHHhcccceeeccCcccccccccCCCeEEEEecCCcccCCHHHHH--hcCceeeCCCCC
Confidence 2 11 1 12222221100 00000000000 012457788899999999999998 9975544 489
Q ss_pred HHHHHHHHHHHhhcCC--CCHHHHHHHhhcCCCC
Q 019334 226 LEDILNIVHRMYEKDG--ITKDEVGSIVKTFPNQ 257 (342)
Q Consensus 226 ~~~R~~Il~~~~~~~~--~s~~di~~lvd~f~~~ 257 (342)
.+++.+|++.+.+..+ ++.+.+..+++...|.
T Consensus 182 ~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G~ 215 (334)
T 1in4_A 182 VKELKEIIKRAASLMDVEIEDAAAEMIAKRSRGT 215 (334)
T ss_dssp HHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTTC
T ss_pred HHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCCC
Confidence 9999999988766544 5667777777655553
No 73
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.48 E-value=1.2e-14 Score=164.57 Aligned_cols=114 Identities=14% Similarity=0.158 Sum_probs=84.7
Q ss_pred CCeE--EEeecCCCCCHHHHHHHHHHHhCCc-----eEEeec--cccc--------ccccCC----cHHHHHHHHHHHHH
Q 019334 73 VPLI--LGIWGGKGQGKSFQTELIFQAMGIE-----PVIMSA--GELE--------SERAGE----PGKLIRERYRTASQ 131 (342)
Q Consensus 73 ~Plg--lgL~GPPG~GKTllaravA~~~g~~-----~i~vs~--~eL~--------s~~~GE----sEr~iR~~F~~A~e 131 (342)
+|+| ++||||||||||++|+++|.+...+ ||.+.. ++++ ++|+|| +|+.||.+|..|++
T Consensus 1079 ~p~g~~~l~~G~~g~GKT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~ 1158 (1706)
T 3cmw_A 1079 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARS 1158 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEEcCCCCChHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHh
Confidence 5666 9999999999999999999888655 555444 3444 889999 99999999998874
Q ss_pred hhhhcCCceEEEeecccccCCCC---C--CC-cccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCC
Q 019334 132 VVQNQGKMSCLMINDIDAGLGRF---G--NT-QMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFS 205 (342)
Q Consensus 132 ~~~~~~~PcILfIDEIDAg~~r~---~--~t-~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~~ 205 (342)
.+||+||+|||||+++++ + +. +..+ ..++++++|..+|+ . .+ ..+|.|| +||+.-
T Consensus 1159 -----~~~~~i~~d~~~al~~~~~~~g~~~~~~~~~-~~r~~~q~l~~~~~--------~---~~-~~~v~v~-~~n~~~ 1219 (1706)
T 3cmw_A 1159 -----GAVDVIVVDSVAALTPKAEIEGEIGDSHMGL-AARMMSQAMRKLAG--------N---LK-QSNTLLI-FINQIR 1219 (1706)
T ss_dssp -----TCCSEEEESCGGGCCCHHHHHSCTTCCCTTH-HHHHHHHHHHHHHH--------H---HH-HTTCEEE-EEECEE
T ss_pred -----cCCeEEEeCchHhcCcccccccccccccccH-HHHHHHHHHHHHHh--------h---hc-cCCeEEE-Eecccc
Confidence 469999999999999973 2 11 1122 23466777777663 0 11 4678777 888764
No 74
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.48 E-value=2.8e-13 Score=143.53 Aligned_cols=153 Identities=16% Similarity=0.153 Sum_probs=100.7
Q ss_pred eEEEeecCCCCCHHHHHHHHHHHh---CCceEEeeccccccc------------ccCCcH-HHHHHHHHHHHHhhhhcCC
Q 019334 75 LILGIWGGKGQGKSFQTELIFQAM---GIEPVIMSAGELESE------------RAGEPG-KLIRERYRTASQVVQNQGK 138 (342)
Q Consensus 75 lglgL~GPPG~GKTllaravA~~~---g~~~i~vs~~eL~s~------------~~GEsE-r~iR~~F~~A~e~~~~~~~ 138 (342)
-.++|+||||||||++|+++|..+ +.+++.++++++... |+|..+ .. |..|.. +..
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~s~l~g~~~~~~G~~~~g~----l~~~~~----~~~ 660 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQ----LTEAVR----RRP 660 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGGGGC--------------C----HHHHHH----HCS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhHHHHHcCCCCCCcCccccch----HHHHHH----hCC
Confidence 489999999999999999999999 889999999887653 334333 22 323322 234
Q ss_pred ceEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCC--------------
Q 019334 139 MSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDF-------------- 204 (342)
Q Consensus 139 PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~-------------- 204 (342)
++||||||||..- ..+...|+.++|+.....-.| ...+ -.++.||+|||..
T Consensus 661 ~~vl~lDEi~~l~------------~~~~~~Ll~~l~~~~~~~~~g--~~vd-~~~~iiI~tsn~~~~~~~~~~~~~~~~ 725 (854)
T 1qvr_A 661 YSVILFDEIEKAH------------PDVFNILLQILDDGRLTDSHG--RTVD-FRNTVIILTSNLGSPLILEGLQKGWPY 725 (854)
T ss_dssp SEEEEESSGGGSC------------HHHHHHHHHHHTTTEECCSSS--CCEE-CTTEEEEEECCTTHHHHHHHHHTTCCH
T ss_pred CeEEEEecccccC------------HHHHHHHHHHhccCceECCCC--CEec-cCCeEEEEecCcChHHHhhhcccccch
Confidence 7999999999752 236677888888532110000 0111 2467899999973
Q ss_pred ------------CCCccCCCCCCCCcceec-C-CCHHHHHHHHHHHhhc-----------CCCCHHHHHHHhh
Q 019334 205 ------------STIYAPLIRDGRMEKFYW-Q-PNLEDILNIVHRMYEK-----------DGITKDEVGSIVK 252 (342)
Q Consensus 205 ------------~~LdpaLlRpGRfD~~i~-v-P~~~~R~~Il~~~~~~-----------~~~s~~di~~lvd 252 (342)
..+.|+|+ .|||.++. . |+.++...|++.++.. ..++.+-++.|+.
T Consensus 726 ~~l~~~v~~~~~~~f~~~l~--~Rl~~~i~~~pl~~edi~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~L~~ 796 (854)
T 1qvr_A 726 ERIRDEVFKVLQQHFRPEFL--NRLDEIVVFRPLTKEQIRQIVEIQLSYLRARLAEKRISLELTEAAKDFLAE 796 (854)
T ss_dssp HHHHHHHHHHHHTTSCHHHH--HTCSBCCBCCCCCHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCHHHH--HhcCeEEeCCCCCHHHHHHHHHHHHHHHHHHHHhCCceEEECHHHHHHHHH
Confidence 23445555 49987654 3 6899999999866541 2367777777775
No 75
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.47 E-value=7.7e-14 Score=130.27 Aligned_cols=150 Identities=11% Similarity=0.229 Sum_probs=100.6
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHhCCc------------------------eEEeecccccccccCCcHHHHHHHHH
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQAMGIE------------------------PVIMSAGELESERAGEPGKLIRERYR 127 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~~g~~------------------------~i~vs~~eL~s~~~GEsEr~iR~~F~ 127 (342)
+.|..++|+||||||||++++++|+.++.. ++.++++. ..+...+|+++.
T Consensus 36 ~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~ 109 (373)
T 1jr3_A 36 RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAAS------RTKVEDTRDLLD 109 (373)
T ss_dssp CCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHHHTSCCSSCEEEETTC------SCCSSCHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhccCCCceEEecccc------cCCHHHHHHHHH
Confidence 567789999999999999999999998752 23333321 012234667776
Q ss_pred HHHHhhhhcCCceEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCC
Q 019334 128 TASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTI 207 (342)
Q Consensus 128 ~A~e~~~~~~~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~~~L 207 (342)
.+... ...+.+.||||||+|.... . ....|+..++.| ..++.+|++||+++.+
T Consensus 110 ~~~~~-~~~~~~~vliiDe~~~l~~-----------~-~~~~Ll~~le~~--------------~~~~~~Il~~~~~~~l 162 (373)
T 1jr3_A 110 NVQYA-PARGRFKVYLIDEVHMLSR-----------H-SFNALLKTLEEP--------------PEHVKFLLATTDPQKL 162 (373)
T ss_dssp HTTSC-CSSSSSEEEEEECGGGSCH-----------H-HHHHHHHHHHSC--------------CSSEEEEEEESCGGGS
T ss_pred HHhhc-cccCCeEEEEEECcchhcH-----------H-HHHHHHHHHhcC--------------CCceEEEEEeCChHhC
Confidence 55322 1246789999999998731 1 123455544421 3578889999999999
Q ss_pred ccCCCCCCCCcceec-CCCHHHHHHHHHHHhhcCC--CCHHHHHHHhhcCCC
Q 019334 208 YAPLIRDGRMEKFYW-QPNLEDILNIVHRMYEKDG--ITKDEVGSIVKTFPN 256 (342)
Q Consensus 208 dpaLlRpGRfD~~i~-vP~~~~R~~Il~~~~~~~~--~s~~di~~lvd~f~~ 256 (342)
+++++. |+..+-+ .|+.++..++++.+++..+ ++.+.+..++....|
T Consensus 163 ~~~l~s--r~~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~~G 212 (373)
T 1jr3_A 163 PVTILS--RCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG 212 (373)
T ss_dssp CHHHHT--TSEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHSSS
T ss_pred cHHHHh--heeEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHCCC
Confidence 999887 5543322 4899999999988776544 456556666654444
No 76
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.45 E-value=8.4e-14 Score=163.03 Aligned_cols=155 Identities=16% Similarity=0.148 Sum_probs=101.1
Q ss_pred HHHHHHHHHHhhcCCCCCeEEEeecCCCCCHHHHH-HHHHHHhCCceEEeecccccccccCCcHHHHHHHHHHHHHhhh-
Q 019334 57 LCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQT-ELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQ- 134 (342)
Q Consensus 57 ~~hi~K~~l~~~~~~k~PlglgL~GPPG~GKTlla-ravA~~~g~~~i~vs~~eL~s~~~GEsEr~iR~~F~~A~e~~~- 134 (342)
..++++.++. ....++|+||||||||++| +++++..+..++.++.+...+ ...+...++...+..+
T Consensus 1256 ~~~ll~~~l~------~~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts------~~~~~~~i~~~~~~~~~ 1323 (2695)
T 4akg_A 1256 HEKIFYDLLN------SKRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTT------TEHILSALHRHTNYVTT 1323 (2695)
T ss_dssp HHHHHHHHHH------HTCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCC------HHHHHHHHHHHBCCEEE
T ss_pred HHHHHHHHHH------CCCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCC------HHHHHHHHHHHhhhccc
Confidence 4455666655 3479999999999999999 555555577888877665543 3455556654422110
Q ss_pred ---------hcCCceEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccC----CCCCccEEEee
Q 019334 135 ---------NQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESD----ITNRIPIIFTG 201 (342)
Q Consensus 135 ---------~~~~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~----~~~~V~VIatT 201 (342)
..+++|||||||||.-.....++| .+...|-.++|. +|.|+..+ ...++.+|||+
T Consensus 1324 ~~g~~~~P~~~gk~~VlFiDEinmp~~d~yg~q------~~lelLRq~le~------gg~yd~~~~~~~~~~~i~lIaA~ 1391 (2695)
T 4akg_A 1324 SKGLTLLPKSDIKNLVLFCDEINLPKLDKYGSQ------NVVLFLRQLMEK------QGFWKTPENKWVTIERIHIVGAC 1391 (2695)
T ss_dssp TTTEEEEEBSSSSCEEEEEETTTCSCCCSSSCC------HHHHHHHHHHHT------SSEECTTTCCEEEEESEEEEEEE
T ss_pred cCCccccCCCCCceEEEEecccccccccccCch------hHHHHHHHHHhc------CCEEEcCCCcEEEecCEEEEEec
Confidence 035679999999998443222343 233333333341 22232211 02468999999
Q ss_pred CCCC-----CCccCCCCCCCCcceecC--CCHHHHHHHHHHHhh
Q 019334 202 NDFS-----TIYAPLIRDGRMEKFYWQ--PNLEDILNIVHRMYE 238 (342)
Q Consensus 202 Nr~~-----~LdpaLlRpGRfD~~i~v--P~~~~R~~Il~~~~~ 238 (342)
|.|. .|+|+|+| || ..+++ |+.+++..|++.+++
T Consensus 1392 Npp~~gGR~~l~~rllR--rf-~vi~i~~P~~~~l~~I~~~il~ 1432 (2695)
T 4akg_A 1392 NPPTDPGRIPMSERFTR--HA-AILYLGYPSGKSLSQIYEIYYK 1432 (2695)
T ss_dssp CCTTSTTCCCCCHHHHT--TE-EEEECCCCTTTHHHHHHHHHHH
T ss_pred CCCccCCCccCChhhhh--ee-eEEEeCCCCHHHHHHHHHHHHH
Confidence 9995 89999999 88 54554 999999999987765
No 77
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.43 E-value=1.5e-13 Score=129.35 Aligned_cols=154 Identities=16% Similarity=0.223 Sum_probs=94.7
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHh---CCceEEeecccccc-----cccC--------CcHHHHHHHHHHHHHhhhh
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQAM---GIEPVIMSAGELES-----ERAG--------EPGKLIRERYRTASQVVQN 135 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~~---g~~~i~vs~~eL~s-----~~~G--------EsEr~iR~~F~~A~e~~~~ 135 (342)
+.+..|+|+||||||||++|++++... +.+|+.++++.+-. ...| ... .....|..|.
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~~lfg~~~g~~tg~~~-~~~g~~~~a~----- 96 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLESELFGHEKGAFTGADK-RREGRFVEAD----- 96 (304)
T ss_dssp STTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHHHHTCCCSSCCC---C-CCCCHHHHHT-----
T ss_pred CCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHHHhcCccccccCchhh-hhcCHHHhcC-----
Confidence 456779999999999999999999965 67899999877642 1122 111 1223444442
Q ss_pred cCCceEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCCccCCCCCC
Q 019334 136 QGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDG 215 (342)
Q Consensus 136 ~~~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~~~LdpaLlRpG 215 (342)
.++|||||||.... .+...|+..++......+++. .....++.||+|||+. ...+++.|
T Consensus 97 ---~g~L~LDEi~~l~~------------~~q~~Ll~~l~~~~~~~~g~~---~~~~~~~riI~atn~~---l~~~v~~g 155 (304)
T 1ojl_A 97 ---GGTLFLDEIGDISP------------LMQVRLLRAIQEREVQRVGSN---QTISVDVRLIAATHRD---LAEEVSAG 155 (304)
T ss_dssp ---TSEEEEESCTTCCH------------HHHHHHHHHHHSSBCCBTTBC---CCCBCCCEEEEEESSC---HHHHHHHT
T ss_pred ---CCEEEEeccccCCH------------HHHHHHHHHHhcCEeeecCCc---ccccCCeEEEEecCcc---HHHHHHhC
Confidence 58999999999742 133456666654221122221 1113468899999986 33566778
Q ss_pred CCcc---------eecCCCHHHHHH----HHHHHhh---------cCCCCHHHHHHHhh
Q 019334 216 RMEK---------FYWQPNLEDILN----IVHRMYE---------KDGITKDEVGSIVK 252 (342)
Q Consensus 216 RfD~---------~i~vP~~~~R~~----Il~~~~~---------~~~~s~~di~~lvd 252 (342)
+|+. .+.+|...+|.+ +++.+++ ...++.+.++.|..
T Consensus 156 ~fr~~L~~Rl~~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~a~~~L~~ 214 (304)
T 1ojl_A 156 RFRQDLYYRLNVVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAMDLLIH 214 (304)
T ss_dssp SSCHHHHHHHSSEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHH
T ss_pred CcHHHHHhhcCeeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHHHHHHHHc
Confidence 8764 133687666644 4433222 12467777777664
No 78
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.42 E-value=4.2e-13 Score=125.24 Aligned_cols=147 Identities=18% Similarity=0.313 Sum_probs=92.4
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHhCC-----------------------------ceEEeecccccccccCC-cHHH
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQAMGI-----------------------------EPVIMSAGELESERAGE-PGKL 121 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~~g~-----------------------------~~i~vs~~eL~s~~~GE-sEr~ 121 (342)
+.|. ++|+||||||||++++++|+++-. +++.+++.+ .|. ....
T Consensus 35 ~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~ 108 (354)
T 1sxj_E 35 DLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSD-----MGNNDRIV 108 (354)
T ss_dssp CCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSSEEEECCC---------CCHHH
T ss_pred CCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccceEEecHhh-----cCCcchHH
Confidence 4566 999999999999999999996521 122222221 111 1124
Q ss_pred HHHHHHHHHHhhhh---------cCCceEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCC
Q 019334 122 IRERYRTASQVVQN---------QGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDIT 192 (342)
Q Consensus 122 iR~~F~~A~e~~~~---------~~~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~ 192 (342)
+|+....+.+.... .+.|.||+|||+|..-. .. ...|+..+.. . .
T Consensus 109 ~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~---------~~---~~~L~~~le~-------------~-~ 162 (354)
T 1sxj_E 109 IQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTK---------DA---QAALRRTMEK-------------Y-S 162 (354)
T ss_dssp HHHHHHHHTTTTC------------CCEEEEEECTTSSCH---------HH---HHHHHHHHHH-------------S-T
T ss_pred HHHHHHHHHHhccccccccccccCCCCeEEEEeCccccCH---------HH---HHHHHHHHHh-------------h-c
Confidence 66666655432110 23688999999999421 11 2234443331 1 2
Q ss_pred CCccEEEeeCCCCCCccCCCCCCCCcceec-CCCHHHHHHHHHHHhhcCC--CC-HHHHHHHhh
Q 019334 193 NRIPIIFTGNDFSTIYAPLIRDGRMEKFYW-QPNLEDILNIVHRMYEKDG--IT-KDEVGSIVK 252 (342)
Q Consensus 193 ~~V~VIatTNr~~~LdpaLlRpGRfD~~i~-vP~~~~R~~Il~~~~~~~~--~s-~~di~~lvd 252 (342)
.++.+|.+||+++.++|+++. |+-.+-+ .|+.++..++|+.+.+..+ ++ .+.++.++.
T Consensus 163 ~~~~~Il~t~~~~~l~~~l~s--R~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~i~~ 224 (354)
T 1sxj_E 163 KNIRLIMVCDSMSPIIAPIKS--QCLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQ 224 (354)
T ss_dssp TTEEEEEEESCSCSSCHHHHT--TSEEEECCCCCHHHHHHHHHHHHHHHTCEECCSHHHHHHHH
T ss_pred CCCEEEEEeCCHHHHHHHHHh--hceEEecCCcCHHHHHHHHHHHHHHcCCCCCcHHHHHHHHH
Confidence 467899999999999999887 6644333 4899999999998877655 45 555555553
No 79
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.41 E-value=8.8e-14 Score=140.98 Aligned_cols=157 Identities=13% Similarity=0.104 Sum_probs=89.9
Q ss_pred eEEEeecCCCCCHHHHHHHHHHHhCC--ceEEee-----cccccccccCCcHHHHHHHHHHHHHhhhhcCCceEEEeecc
Q 019334 75 LILGIWGGKGQGKSFQTELIFQAMGI--EPVIMS-----AGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDI 147 (342)
Q Consensus 75 lglgL~GPPG~GKTllaravA~~~g~--~~i~vs-----~~eL~s~~~GEsEr~iR~~F~~A~e~~~~~~~PcILfIDEI 147 (342)
..|+|+||||||||++|+++|+.++. +|..+. .++|+..+.+...+. ...|..+..-. ...++|||||||
T Consensus 42 ~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G~~~~~~~~~-~g~~~~~~~g~--l~~~~IL~IDEI 118 (500)
T 3nbx_X 42 ESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALKD-EGRYERLTSGY--LPEAEIVFLDEI 118 (500)
T ss_dssp CEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHCCBC-----------CBCCTTS--GGGCSEEEEESG
T ss_pred CeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcCcccHHHHhh-chhHHhhhccC--CCcceeeeHHhH
Confidence 47899999999999999999998854 333333 255665555443222 12232222110 014889999999
Q ss_pred cccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCC---CccCCCCCCCCcceecC-
Q 019334 148 DAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFST---IYAPLIRDGRMEKFYWQ- 223 (342)
Q Consensus 148 DAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~~~---LdpaLlRpGRfD~~i~v- 223 (342)
+... ..+...|+..|+. ..+.+.|... . .+..++|+|||++.. ..++|++ ||+..+.+
T Consensus 119 ~r~~------------~~~q~~LL~~lee-~~v~i~G~~~--~-~~~~~iI~ATN~lpe~~~~~~aLld--RF~~~i~v~ 180 (500)
T 3nbx_X 119 WKAG------------PAILNTLLTAINE-RQFRNGAHVE--K-IPMRLLVAASNELPEADSSLEALYD--RMLIRLWLD 180 (500)
T ss_dssp GGCC------------HHHHHHHHHHHHS-SEEECSSSEE--E-CCCCEEEEEESSCCCTTCTTHHHHT--TCCEEEECC
T ss_pred hhhc------------HHHHHHHHHHHHH-HhccCCCCcC--C-cchhhhhhccccCCCccccHHHHHH--HHHHHHHHH
Confidence 8642 1245567777653 2334444211 1 222356889996433 3347877 89877776
Q ss_pred -CCH-HHHHHHHHHHhhc--------CCCCHHHHHHHhh
Q 019334 224 -PNL-EDILNIVHRMYEK--------DGITKDEVGSIVK 252 (342)
Q Consensus 224 -P~~-~~R~~Il~~~~~~--------~~~s~~di~~lvd 252 (342)
|+. ++|.+|++.+... ..++.+++.++..
T Consensus 181 ~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~ 219 (500)
T 3nbx_X 181 KVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQK 219 (500)
T ss_dssp SCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHH
T ss_pred HhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHh
Confidence 554 7788999765421 1245566655543
No 80
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.40 E-value=2.3e-14 Score=147.30 Aligned_cols=137 Identities=17% Similarity=0.145 Sum_probs=86.9
Q ss_pred EEEeecCCCCCHHHHHHHHHHHhCCceEE----eeccccccccc-----CCcHHHHHHHHHHHHHhhhhcCCceEEEeec
Q 019334 76 ILGIWGGKGQGKSFQTELIFQAMGIEPVI----MSAGELESERA-----GEPGKLIRERYRTASQVVQNQGKMSCLMIND 146 (342)
Q Consensus 76 glgL~GPPG~GKTllaravA~~~g~~~i~----vs~~eL~s~~~-----GEsEr~iR~~F~~A~e~~~~~~~PcILfIDE 146 (342)
.++|+||||||||++|+++|+.++..+.. ++++++..... |+.... ...+..| ..+||||||
T Consensus 329 ~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~-~G~l~~A--------~~gil~IDE 399 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVVREKGTGEYYLE-AGALVLA--------DGGIAVIDE 399 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECSSGGGTSSCSEE-ECHHHHH--------SSSEECCTT
T ss_pred ceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceeeecccccccccc-CCeeEec--------CCCcEEeeh
Confidence 69999999999999999999999865544 22333332222 111000 0012122 258999999
Q ss_pred ccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccC--ccccccCCCCCccEEEeeCCCC-------------CCccCC
Q 019334 147 IDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIG--QDWRESDITNRIPIIFTGNDFS-------------TIYAPL 211 (342)
Q Consensus 147 IDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~--g~~~~~~~~~~V~VIatTNr~~-------------~LdpaL 211 (342)
||+..+ .+...|++.|+.- .+.+. |.. .....++.||||||.+. .|++||
T Consensus 400 id~l~~------------~~q~~Ll~~le~~-~i~i~~~g~~--~~~~~~~~vIaatNp~~G~~~~~~~~~~ni~l~~aL 464 (595)
T 3f9v_A 400 IDKMRD------------EDRVAIHEAMEQQ-TVSIAKAGIV--AKLNARAAVIAAGNPKFGRYISERPVSDNINLPPTI 464 (595)
T ss_dssp TTCCCS------------HHHHHHHHHHHSS-SEEEESSSSE--EEECCCCEEEEEECCTTCCSCTTSCSCTTTCSCSSS
T ss_pred hhhCCH------------hHhhhhHHHHhCC-EEEEecCCcE--EEecCceEEEEEcCCcCCccCcccCchhccCCCHHH
Confidence 998742 1334566666632 12211 211 11135788999999987 899999
Q ss_pred CCCCCCcceec-C--CCHHHHHHHHHHHhhc
Q 019334 212 IRDGRMEKFYW-Q--PNLEDILNIVHRMYEK 239 (342)
Q Consensus 212 lRpGRfD~~i~-v--P~~~~R~~Il~~~~~~ 239 (342)
++ |||-++. . |+.+ ...|.+.++..
T Consensus 465 l~--RFDl~~~~~~~~~~e-~~~i~~~il~~ 492 (595)
T 3f9v_A 465 LS--RFDLIFILKDQPGEQ-DRELANYILDV 492 (595)
T ss_dssp GG--GCSCCEEECCTTHHH-HHHHHHHHHTT
T ss_pred Hh--hCeEEEEeCCCCCHH-HHHHHHHHHHH
Confidence 99 9997554 2 7777 77888766653
No 81
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.39 E-value=2.4e-13 Score=123.06 Aligned_cols=137 Identities=14% Similarity=0.192 Sum_probs=80.0
Q ss_pred CCeEEEeecCCCCCHHHHHHHHHHHhC---CceEEeecccccc-----cccCCcHHHHHHHHHHHHH----hhhhcCCce
Q 019334 73 VPLILGIWGGKGQGKSFQTELIFQAMG---IEPVIMSAGELES-----ERAGEPGKLIRERYRTASQ----VVQNQGKMS 140 (342)
Q Consensus 73 ~PlglgL~GPPG~GKTllaravA~~~g---~~~i~vs~~eL~s-----~~~GEsEr~iR~~F~~A~e----~~~~~~~Pc 140 (342)
.+..++|+||||||||++|++++..+. .+++.++++++-. ...|... ..|..+.. ... ....+
T Consensus 28 ~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~~~~~~l~g~~~----~~~~g~~~~~~~~l~-~a~~~ 102 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEA----GAFTGAQKRHPGRFE-RADGG 102 (265)
T ss_dssp SCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHHHHHHHHHCCC-------------CCCCHHH-HTTTS
T ss_pred CCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChhHHHHHhcCCcc----cccccccccccchhh-hcCCc
Confidence 456789999999999999999999875 6899999887632 1122211 01111110 000 12368
Q ss_pred EEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCC-------CCCccCCCC
Q 019334 141 CLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDF-------STIYAPLIR 213 (342)
Q Consensus 141 ILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~-------~~LdpaLlR 213 (342)
+|||||||...+ .+...|+..++....-.+++. .....++.||+|||.+ ..+.++|+.
T Consensus 103 ~l~lDEi~~l~~------------~~q~~Ll~~l~~~~~~~~g~~---~~~~~~~~iI~atn~~~~~~~~~~~~~~~L~~ 167 (265)
T 2bjv_A 103 TLFLDELATAPM------------MVQEKLLRVIEYGELERVGGS---QPLQVNVRLVCATNADLPAMVNEGTFRADLLD 167 (265)
T ss_dssp EEEEESGGGSCH------------HHHHHHHHHHHHCEECCCCC-----CEECCCEEEEEESSCHHHHHHHTSSCHHHHH
T ss_pred EEEEechHhcCH------------HHHHHHHHHHHhCCeecCCCc---ccccCCeEEEEecCcCHHHHHHcCCccHHHHH
Confidence 999999998742 123455555553111011111 1113468899999985 234555555
Q ss_pred CCCCcc-eecCCCHHHHHH
Q 019334 214 DGRMEK-FYWQPNLEDILN 231 (342)
Q Consensus 214 pGRfD~-~i~vP~~~~R~~ 231 (342)
||+. .+.+|...+|.+
T Consensus 168 --Rl~~~~i~lp~L~~R~~ 184 (265)
T 2bjv_A 168 --ALAFDVVQLPPLRERES 184 (265)
T ss_dssp --HHCSEEEECCCGGGCHH
T ss_pred --hhcCcEEeCCChhhhhH
Confidence 6654 355788777654
No 82
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.38 E-value=9.9e-12 Score=117.71 Aligned_cols=151 Identities=11% Similarity=0.087 Sum_probs=103.1
Q ss_pred CCCCeEEEeecCCCCCHHHHHHHHHHHhCCc------------------------eEEeecccccccccCCcHHHHHHHH
Q 019334 71 VKVPLILGIWGGKGQGKSFQTELIFQAMGIE------------------------PVIMSAGELESERAGEPGKLIRERY 126 (342)
Q Consensus 71 ~k~PlglgL~GPPG~GKTllaravA~~~g~~------------------------~i~vs~~eL~s~~~GEsEr~iR~~F 126 (342)
-+.|..+++|||||+|||++|+++|+.+.+. ++.+.+.+ +-..-+-..+|++.
T Consensus 21 ~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~---~~~~~~i~~ir~l~ 97 (334)
T 1a5t_A 21 GRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEK---GKNTLGVDAVREVT 97 (334)
T ss_dssp TCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCT---TCSSBCHHHHHHHH
T ss_pred CCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccc---cCCCCCHHHHHHHH
Confidence 4788899999999999999999999998753 23332210 00112345688888
Q ss_pred HHHHHhhhhcCCceEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCC
Q 019334 127 RTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFST 206 (342)
Q Consensus 127 ~~A~e~~~~~~~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~~~ 206 (342)
+.+... ...+...|++|||+|.... . ....|+..++.| ..++.+|.+||.++.
T Consensus 98 ~~~~~~-~~~~~~kvviIdead~l~~-----------~-a~naLLk~lEep--------------~~~~~~Il~t~~~~~ 150 (334)
T 1a5t_A 98 EKLNEH-ARLGGAKVVWVTDAALLTD-----------A-AANALLKTLEEP--------------PAETWFFLATREPER 150 (334)
T ss_dssp HHTTSC-CTTSSCEEEEESCGGGBCH-----------H-HHHHHHHHHTSC--------------CTTEEEEEEESCGGG
T ss_pred HHHhhc-cccCCcEEEEECchhhcCH-----------H-HHHHHHHHhcCC--------------CCCeEEEEEeCChHh
Confidence 766432 1236689999999998741 1 123456555532 456888888999999
Q ss_pred CccCCCCCCCCcceec-CCCHHHHHHHHHHHhhcCCCCHHHHHHHhhcCCC
Q 019334 207 IYAPLIRDGRMEKFYW-QPNLEDILNIVHRMYEKDGITKDEVGSIVKTFPN 256 (342)
Q Consensus 207 LdpaLlRpGRfD~~i~-vP~~~~R~~Il~~~~~~~~~s~~di~~lvd~f~~ 256 (342)
|+|+++. |.-.+-+ .|+.++..++|+... .++.+.+..++....|
T Consensus 151 l~~ti~S--Rc~~~~~~~~~~~~~~~~L~~~~---~~~~~~~~~l~~~s~G 196 (334)
T 1a5t_A 151 LLATLRS--RCRLHYLAPPPEQYAVTWLSREV---TMSQDALLAALRLSAG 196 (334)
T ss_dssp SCHHHHT--TSEEEECCCCCHHHHHHHHHHHC---CCCHHHHHHHHHHTTT
T ss_pred CcHHHhh--cceeeeCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHcCC
Confidence 9999988 6655444 389999999887665 5677666666644333
No 83
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.34 E-value=3.7e-12 Score=119.85 Aligned_cols=154 Identities=15% Similarity=0.236 Sum_probs=97.9
Q ss_pred HHHHHHHhhcCCCCCeEEEeecCCCCCHHHHHHHHHHHhC-----CceEEeecccccccccCCcHHHHHHHHHHHHHhhh
Q 019334 60 IVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMG-----IEPVIMSAGELESERAGEPGKLIRERYRTASQVVQ 134 (342)
Q Consensus 60 i~K~~l~~~~~~k~PlglgL~GPPG~GKTllaravA~~~g-----~~~i~vs~~eL~s~~~GEsEr~iR~~F~~A~e~~~ 134 (342)
.+++++. .-+.|. ++||||||||||++++++|+.+. ..++.+++++.. | -..+|+......+...
T Consensus 36 ~L~~~i~---~g~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~----~--~~~ir~~i~~~~~~~~ 105 (340)
T 1sxj_C 36 TVRKFVD---EGKLPH-LLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDR----G--IDVVRNQIKDFASTRQ 105 (340)
T ss_dssp HHHHHHH---TTCCCC-EEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCC----S--HHHHHTHHHHHHHBCC
T ss_pred HHHHHHh---cCCCce-EEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcccc----c--HHHHHHHHHHHHhhcc
Confidence 3444444 225555 89999999999999999999863 346667766521 2 3456665544332110
Q ss_pred -hcCCceEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCCccCCCC
Q 019334 135 -NQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIR 213 (342)
Q Consensus 135 -~~~~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~~~LdpaLlR 213 (342)
..+.+.|++|||+|.... ..+ ..|+..++.| ...+.+|.+||.++.++|+++.
T Consensus 106 ~~~~~~~viiiDe~~~l~~---------~~~---~~L~~~le~~--------------~~~~~~il~~n~~~~i~~~i~s 159 (340)
T 1sxj_C 106 IFSKGFKLIILDEADAMTN---------AAQ---NALRRVIERY--------------TKNTRFCVLANYAHKLTPALLS 159 (340)
T ss_dssp SSSCSCEEEEETTGGGSCH---------HHH---HHHHHHHHHT--------------TTTEEEEEEESCGGGSCHHHHT
T ss_pred cCCCCceEEEEeCCCCCCH---------HHH---HHHHHHHhcC--------------CCCeEEEEEecCccccchhHHh
Confidence 013479999999998742 111 2344443321 3456788889999999999988
Q ss_pred CCCCcceecC-CCHHHHHHHHHHHhhcCC--CCHHHHHHHh
Q 019334 214 DGRMEKFYWQ-PNLEDILNIVHRMYEKDG--ITKDEVGSIV 251 (342)
Q Consensus 214 pGRfD~~i~v-P~~~~R~~Il~~~~~~~~--~s~~di~~lv 251 (342)
|+..+-+. |+.++..+++...++..+ ++.+.+..++
T Consensus 160 --R~~~~~~~~l~~~~~~~~l~~~~~~~~~~i~~~~~~~i~ 198 (340)
T 1sxj_C 160 --QCTRFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALI 198 (340)
T ss_dssp --TSEEEECCCCCHHHHHHHHHHHHHTTTCCBCHHHHHHHH
T ss_pred --hceeEeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 77654443 678888888887775444 5554444443
No 84
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.32 E-value=1.5e-12 Score=111.45 Aligned_cols=86 Identities=14% Similarity=0.156 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCeEEEeecCCCCCHHHHHHHHHHHh----CCceEEeecccccccccCCcHHHHHHHHHH
Q 019334 53 MASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAM----GIEPVIMSAGELESERAGEPGKLIRERYRT 128 (342)
Q Consensus 53 ~d~l~~hi~K~~l~~~~~~k~PlglgL~GPPG~GKTllaravA~~~----g~~~i~vs~~eL~s~~~GEsEr~iR~~F~~ 128 (342)
..+-+...+++|.. ...+..+.+++|+||||||||++++++++.+ |..++.++..++.+.+. ..|..
T Consensus 18 ~~~~~~~~~~~~~~-~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~~~--------~~~~~ 88 (180)
T 3ec2_A 18 SQNRALLTIRVFVH-NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFRLK--------HLMDE 88 (180)
T ss_dssp HHHHHHHHHHHHHH-SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHHHH--------HHHHH
T ss_pred HHHHHHHHHHHHHH-hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHH--------HHhcC
Confidence 44556777777776 3344456899999999999999999999877 77788888888765322 11111
Q ss_pred -----HHHhhhhcCCceEEEeeccccc
Q 019334 129 -----ASQVVQNQGKMSCLMINDIDAG 150 (342)
Q Consensus 129 -----A~e~~~~~~~PcILfIDEIDAg 150 (342)
+.+. -..|.+|+|||+++.
T Consensus 89 ~~~~~~~~~---~~~~~llilDE~~~~ 112 (180)
T 3ec2_A 89 GKDTKFLKT---VLNSPVLVLDDLGSE 112 (180)
T ss_dssp TCCSHHHHH---HHTCSEEEEETCSSS
T ss_pred chHHHHHHH---hcCCCEEEEeCCCCC
Confidence 1111 125899999999864
No 85
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=99.20 E-value=4.6e-11 Score=117.20 Aligned_cols=119 Identities=10% Similarity=0.076 Sum_probs=79.5
Q ss_pred cCCCCCeEEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccccccCCcHHHHHHHHHHHHHhhhhcCCceEEEeeccc
Q 019334 69 LNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDID 148 (342)
Q Consensus 69 ~~~k~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~~~GEsEr~iR~~F~~A~e~~~~~~~PcILfIDEID 148 (342)
.+++.+.+++|+||||||||++++++++..+..++.+..++ .. ..|..+ . .-+.+++|+||+|
T Consensus 164 ~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~----------~~--~~~~lg--~---~~q~~~~l~dd~~ 226 (377)
T 1svm_A 164 YNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPL----------DR--LNFELG--V---AIDQFLVVFEDVK 226 (377)
T ss_dssp HCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCT----------TT--HHHHHG--G---GTTCSCEEETTCC
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccc----------hh--HHHHHH--H---hcchhHHHHHHHH
Confidence 46677789999999999999999999999887665543332 00 012111 1 1246788999999
Q ss_pred ccCC-CCCCCcccchhHHH-HHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCCccCCCCCCCCcceecCCC
Q 019334 149 AGLG-RFGNTQMTVNNQIV-VGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYWQPN 225 (342)
Q Consensus 149 Ag~~-r~~~t~~~v~~q~V-~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~~~LdpaLlRpGRfD~~i~vP~ 225 (342)
..+. .++-.+.. ..+ ...+.+.+|| .|.|+++||+++.| ++|+||||+|..++.+.
T Consensus 227 ~~~~~~r~l~~~~---~~~~~~~l~~~ldG-----------------~v~v~~~tn~~~~l-~alf~pg~ld~~~~~l~ 284 (377)
T 1svm_A 227 GTGGESRDLPSGQ---GINNLDNLRDYLDG-----------------SVKVNLEKKHLNKR-TQIFPPGIVTMNEYSVP 284 (377)
T ss_dssp CSTTTTTTCCCCS---HHHHHHTTHHHHHC-----------------SSCEEECCSSSCCE-EECCCCEEEEECSCCCC
T ss_pred HHHHHHhhccccC---cchHHHHHHHHhcC-----------------CCeEeeccCchhhH-HHhhcCcccChhHHhhc
Confidence 9875 33311110 111 1223333332 36789999999999 79999999999887644
No 86
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.20 E-value=8.3e-11 Score=110.91 Aligned_cols=162 Identities=12% Similarity=0.113 Sum_probs=95.5
Q ss_pred CCeEEEe--ecCCCCCHHHHHHHHHHHh---------CCceEEeecccccc------c----------ccCCcHHHHHHH
Q 019334 73 VPLILGI--WGGKGQGKSFQTELIFQAM---------GIEPVIMSAGELES------E----------RAGEPGKLIRER 125 (342)
Q Consensus 73 ~PlglgL--~GPPG~GKTllaravA~~~---------g~~~i~vs~~eL~s------~----------~~GEsEr~iR~~ 125 (342)
.|..++| +||||||||++++++++++ +..++.+++.+..+ . ..|.+...+.+.
T Consensus 49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 128 (412)
T 1w5s_A 49 SDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKA 128 (412)
T ss_dssp CCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHH
T ss_pred CCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHH
Confidence 5667888 9999999999999999876 56778888643211 1 013333322222
Q ss_pred HHHHHHhhhhcCCceEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccC-CCCCccEEEeeCCC
Q 019334 126 YRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESD-ITNRIPIIFTGNDF 204 (342)
Q Consensus 126 F~~A~e~~~~~~~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~-~~~~V~VIatTNr~ 204 (342)
+.... ...++|++|+|||+|........ ++.+...|+..+++ + ..+ ...++.||+|||++
T Consensus 129 l~~~l---~~~~~~~llvlDe~~~l~~~~~~------~~~~l~~l~~~~~~-----~-----~~~~~~~~v~lI~~~~~~ 189 (412)
T 1w5s_A 129 LVDNL---YVENHYLLVILDEFQSMLSSPRI------AAEDLYTLLRVHEE-----I-----PSRDGVNRIGFLLVASDV 189 (412)
T ss_dssp HHHHH---HHHTCEEEEEEESTHHHHSCTTS------CHHHHHHHHTHHHH-----S-----CCTTSCCBEEEEEEEEET
T ss_pred HHHHH---HhcCCeEEEEEeCHHHHhhccCc------chHHHHHHHHHHHh-----c-----ccCCCCceEEEEEEeccc
Confidence 22222 12467999999999997532111 12233344443331 0 000 01578899999887
Q ss_pred C---CCc---cCCCCCCCCcceecC--CCHHHHHHHHHHHhh----cCCCCHHHHHHHhhcCC
Q 019334 205 S---TIY---APLIRDGRMEKFYWQ--PNLEDILNIVHRMYE----KDGITKDEVGSIVKTFP 255 (342)
Q Consensus 205 ~---~Ld---paLlRpGRfD~~i~v--P~~~~R~~Il~~~~~----~~~~s~~di~~lvd~f~ 255 (342)
+ .++ +.+.+ ||...+.+ ++.++..+||+..+. ...++.+.++.+.....
T Consensus 190 ~~~~~l~~~~~~~~~--~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~ 250 (412)
T 1w5s_A 190 RALSYMREKIPQVES--QIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYG 250 (412)
T ss_dssp HHHHHHHHHCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHC
T ss_pred cHHHHHhhhcchhhh--hcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHH
Confidence 6 233 44544 34333444 588999999976543 23467776766665444
No 87
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=99.18 E-value=4.6e-11 Score=103.44 Aligned_cols=88 Identities=20% Similarity=0.258 Sum_probs=56.6
Q ss_pred HHHHHHHHHHhhcCCCCCeEEEeecCCCCCHHHHHHHHHHHh---CCceEEeecccccccccCCc-HHHHHHHHHHHHHh
Q 019334 57 LCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAM---GIEPVIMSAGELESERAGEP-GKLIRERYRTASQV 132 (342)
Q Consensus 57 ~~hi~K~~l~~~~~~k~PlglgL~GPPG~GKTllaravA~~~---g~~~i~vs~~eL~s~~~GEs-Er~iR~~F~~A~e~ 132 (342)
+...++.|+........|..++||||||||||++|++++.++ +.+++.++.+++...+...- ...+.+.+....
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 114 (202)
T 2w58_A 37 AIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFRELKHSLQDQTMNEKLDYIK-- 114 (202)
T ss_dssp HHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHC---CCCHHHHHHHH--
T ss_pred HHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHHHHHHHhccchHHHHHHHhc--
Confidence 334566676633322345899999999999999999999988 77888888887765332100 000122222221
Q ss_pred hhhcCCceEEEeecccccC
Q 019334 133 VQNQGKMSCLMINDIDAGL 151 (342)
Q Consensus 133 ~~~~~~PcILfIDEIDAg~ 151 (342)
.+++|+||||+...
T Consensus 115 -----~~~~lilDei~~~~ 128 (202)
T 2w58_A 115 -----KVPVLMLDDLGAEA 128 (202)
T ss_dssp -----HSSEEEEEEECCC-
T ss_pred -----CCCEEEEcCCCCCc
Confidence 25799999998753
No 88
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=99.06 E-value=1.4e-10 Score=112.71 Aligned_cols=117 Identities=15% Similarity=0.094 Sum_probs=71.7
Q ss_pred CeEEEeecCCCCCHHHHHHHHHHHhCC--ceEEeecccccccccCCcHHHHHHHHHHHHHhhhhcCCceEEEeecccccC
Q 019334 74 PLILGIWGGKGQGKSFQTELIFQAMGI--EPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGL 151 (342)
Q Consensus 74 PlglgL~GPPG~GKTllaravA~~~g~--~~i~vs~~eL~s~~~GEsEr~iR~~F~~A~e~~~~~~~PcILfIDEIDAg~ 151 (342)
...++|+||||||||++|.++|.+.|. .++.+...|.++.+..+.+..++.+++...+ .. +||||||++..
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~------~~-LLVIDsI~aL~ 195 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQ------HR-VIVIDSLKNVI 195 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHH------CS-EEEEECCTTTC
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhh------CC-EEEEecccccc
Confidence 356799999999999999999987654 4666644666776667777776666654432 13 99999999986
Q ss_pred CCCCC-CcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCCccCC
Q 019334 152 GRFGN-TQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPL 211 (342)
Q Consensus 152 ~r~~~-t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~~~LdpaL 211 (342)
....+ .......+.+. +++..|++ +.. ..++.||+||| +..+|+++
T Consensus 196 ~~~~~~s~~G~v~~~lr-qlL~~L~~---------~~k---~~gvtVIlttn-p~s~deal 242 (331)
T 2vhj_A 196 GAAGGNTTSGGISRGAF-DLLSDIGA---------MAA---SRGCVVIASLN-PTSNDDKI 242 (331)
T ss_dssp -----------CCHHHH-HHHHHHHH---------HHH---HHTCEEEEECC-CSSCSSSH
T ss_pred cccccccccchHHHHHH-HHHHHHHH---------HHh---hCCCEEEEEeC-CcccchhH
Confidence 54322 11111123222 33333321 111 24678899988 66777775
No 89
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.03 E-value=1.3e-09 Score=103.43 Aligned_cols=135 Identities=10% Similarity=0.034 Sum_probs=91.8
Q ss_pred CeEEEeecCCCCCHHHHHHHHHHHh------CCceEEeecccccccccCCcHHHHHHHHHHHHHhhhhcCCceEEEeecc
Q 019334 74 PLILGIWGGKGQGKSFQTELIFQAM------GIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDI 147 (342)
Q Consensus 74 PlglgL~GPPG~GKTllaravA~~~------g~~~i~vs~~eL~s~~~GEsEr~iR~~F~~A~e~~~~~~~PcILfIDEI 147 (342)
+..+++|||||||||++|+++|+.+ ...++.+++.. + .-+-..+|++.+.|... +..+...|+||||+
T Consensus 18 ~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~---~--~~~id~ir~li~~~~~~-p~~~~~kvviIdea 91 (305)
T 2gno_A 18 GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEG---E--NIGIDDIRTIKDFLNYS-PELYTRKYVIVHDC 91 (305)
T ss_dssp SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSS---S--CBCHHHHHHHHHHHTSC-CSSSSSEEEEETTG
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCc---C--CCCHHHHHHHHHHHhhc-cccCCceEEEeccH
Confidence 6689999999999999999999975 34666666542 0 12344688888777532 22345689999999
Q ss_pred cccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCCccCCCCCCCCcceec-CCCH
Q 019334 148 DAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEKFYW-QPNL 226 (342)
Q Consensus 148 DAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~~~LdpaLlRpGRfD~~i~-vP~~ 226 (342)
|.... . ....|+..+.. + .+++.+|.+||.++.|.|+++- | .+-+ .|+.
T Consensus 92 d~lt~-----------~-a~naLLk~LEe-------------p-~~~t~fIl~t~~~~kl~~tI~S--R--~~~f~~l~~ 141 (305)
T 2gno_A 92 ERMTQ-----------Q-AANAFLKALEE-------------P-PEYAVIVLNTRRWHYLLPTIKS--R--VFRVVVNVP 141 (305)
T ss_dssp GGBCH-----------H-HHHHTHHHHHS-------------C-CTTEEEEEEESCGGGSCHHHHT--T--SEEEECCCC
T ss_pred HHhCH-----------H-HHHHHHHHHhC-------------C-CCCeEEEEEECChHhChHHHHc--e--eEeCCCCCH
Confidence 99731 1 12345555443 2 4567777778889999999887 5 3222 4788
Q ss_pred HHHHHHHHHHhhcCCCCHHHH
Q 019334 227 EDILNIVHRMYEKDGITKDEV 247 (342)
Q Consensus 227 ~~R~~Il~~~~~~~~~s~~di 247 (342)
++-.+.|+..+ +++.+.+
T Consensus 142 ~~i~~~L~~~~---~i~~~~~ 159 (305)
T 2gno_A 142 KEFRDLVKEKI---GDLWEEL 159 (305)
T ss_dssp HHHHHHHHHHH---TTHHHHC
T ss_pred HHHHHHHHHHh---CCCHHHH
Confidence 88888887665 3544443
No 90
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.97 E-value=4e-10 Score=106.50 Aligned_cols=86 Identities=14% Similarity=0.298 Sum_probs=55.9
Q ss_pred HHHHHHHHHHhhcCCCCCeEEEeecCCCCCHHHHHHHHHHHh----CCceEEeecccccccccCC-cHHHHHHHHHHHHH
Q 019334 57 LCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAM----GIEPVIMSAGELESERAGE-PGKLIRERYRTASQ 131 (342)
Q Consensus 57 ~~hi~K~~l~~~~~~k~PlglgL~GPPG~GKTllaravA~~~----g~~~i~vs~~eL~s~~~GE-sEr~iR~~F~~A~e 131 (342)
+...++.|+...+. ..+.+++||||||||||++|.++|.++ |.+++.++.++++..+.+. .+..+.+.+...
T Consensus 136 ~~~~~~~~i~~~~~-~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~-- 212 (308)
T 2qgz_A 136 AFSAILDFVEQYPS-AEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAIDVKNAISNGSVKEEIDAV-- 212 (308)
T ss_dssp HHHHHHHHHHHCSC-SSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHHHHCCCC----CCTTHHH--
T ss_pred HHHHHHHHHHhccc-cCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHHHHHHhccchHHHHHHHh--
Confidence 44467778773322 236899999999999999999999755 4788889988877643321 111111122111
Q ss_pred hhhhcCCceEEEeeccccc
Q 019334 132 VVQNQGKMSCLMINDIDAG 150 (342)
Q Consensus 132 ~~~~~~~PcILfIDEIDAg 150 (342)
.++.+||||||++.
T Consensus 213 -----~~~~lLiiDdig~~ 226 (308)
T 2qgz_A 213 -----KNVPVLILDDIGAE 226 (308)
T ss_dssp -----HTSSEEEEETCCC-
T ss_pred -----cCCCEEEEcCCCCC
Confidence 13679999999764
No 91
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.96 E-value=1.3e-09 Score=92.82 Aligned_cols=59 Identities=15% Similarity=0.257 Sum_probs=48.5
Q ss_pred CCeEEEeecCCCCCHHHHHHHHHHHh---CCceEEeecccccccccCCcHHHHHHHHHHHHHhhhhcCCceEEEeecccc
Q 019334 73 VPLILGIWGGKGQGKSFQTELIFQAM---GIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDA 149 (342)
Q Consensus 73 ~PlglgL~GPPG~GKTllaravA~~~---g~~~i~vs~~eL~s~~~GEsEr~iR~~F~~A~e~~~~~~~PcILfIDEIDA 149 (342)
....++|+||+|||||+++++++..+ |...+.+++.++... +. ..+|.+|+|||+++
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~-----------------~~---~~~~~lLilDE~~~ 94 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT-----------------DA---AFEAEYLAVDQVEK 94 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC-----------------GG---GGGCSEEEEESTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH-----------------HH---HhCCCEEEEeCccc
Confidence 34689999999999999999999988 888899999888754 11 12489999999988
Q ss_pred cC
Q 019334 150 GL 151 (342)
Q Consensus 150 g~ 151 (342)
..
T Consensus 95 ~~ 96 (149)
T 2kjq_A 95 LG 96 (149)
T ss_dssp CC
T ss_pred cC
Confidence 54
No 92
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.92 E-value=2.1e-10 Score=117.33 Aligned_cols=101 Identities=16% Similarity=0.187 Sum_probs=58.5
Q ss_pred CceEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCcccc--------ccCCCCCccEEEeeCCC--CCC
Q 019334 138 KMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWR--------ESDITNRIPIIFTGNDF--STI 207 (342)
Q Consensus 138 ~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~--------~~~~~~~V~VIatTNr~--~~L 207 (342)
.+.+|||||||..-+ .+...|+..|++- .+.+.|... .+....++.||+|||+. ..+
T Consensus 201 ~~gvL~LDEi~~l~~------------~~q~~Ll~~Le~~-~~~~~g~~~~~~~~~l~~~~~p~~~~vI~atn~~~~~~l 267 (604)
T 3k1j_A 201 HKGVLFIDEIATLSL------------KMQQSLLTAMQEK-KFPITGQSEMSSGAMVRTEPVPCDFVLVAAGNLDTVDKM 267 (604)
T ss_dssp TTSEEEETTGGGSCH------------HHHHHHHHHHHHS-EECCBCSCTTSGGGGCBCSCEECCCEEEEEECHHHHHHS
T ss_pred CCCEEEEechhhCCH------------HHHHHHHHHHHcC-cEEecccccccccccCCCCccceeEEEEEecCHHHHhhc
Confidence 477999999999621 1333455554421 122212100 11112367799999987 679
Q ss_pred ccCCCCCCCCcc---eecCC-----CHHHHHHHHHHHhh-------cCCCCHHHHHHHhhc
Q 019334 208 YAPLIRDGRMEK---FYWQP-----NLEDILNIVHRMYE-------KDGITKDEVGSIVKT 253 (342)
Q Consensus 208 dpaLlRpGRfD~---~i~vP-----~~~~R~~Il~~~~~-------~~~~s~~di~~lvd~ 253 (342)
+|+|++ ||+. .+..| +.+....+++.+.+ ...++.+.++.|+..
T Consensus 268 ~~~l~~--R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~~Li~~ 326 (604)
T 3k1j_A 268 HPALRS--RIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEIVRE 326 (604)
T ss_dssp CHHHHH--HHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBHHHHHHHHHH
T ss_pred CHHHHH--HhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCCHHHHHHHHHH
Confidence 999999 9873 33332 34455555543222 135778888888763
No 93
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.80 E-value=6.5e-08 Score=88.49 Aligned_cols=159 Identities=15% Similarity=0.216 Sum_probs=89.7
Q ss_pred eEEEeecCCCCCHHHHHHHHHHHhCCceEEeeccccc------------c---cccCC---------------------c
Q 019334 75 LILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELE------------S---ERAGE---------------------P 118 (342)
Q Consensus 75 lglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~------------s---~~~GE---------------------s 118 (342)
..++|+||+|||||++++.++++.+ .+.++..+.. . ...++ +
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 109 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRELYAERGHITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPR 109 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHHHHHTTTCBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGG
T ss_pred CeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeecccccccCCCHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccc
Confidence 5899999999999999999999987 4555443221 0 00111 0
Q ss_pred HHHHHHHHHHHHHhhhhcCCceEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEE
Q 019334 119 GKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPII 198 (342)
Q Consensus 119 Er~iR~~F~~A~e~~~~~~~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VI 198 (342)
...+.++++...+.++..+ |++|+|||++..... +... ...+...|-.+++. ..++.+|
T Consensus 110 ~~~~~~~~~~l~~~~~~~~-~~vlvlDe~~~~~~~-~~~~----~~~~~~~L~~~~~~---------------~~~~~~i 168 (350)
T 2qen_A 110 KLSLREVFRELNDLGEELG-EFIVAFDEAQYLRFY-GSRG----GKELLALFAYAYDS---------------LPNLKII 168 (350)
T ss_dssp GCCHHHHHHHHHHHHHHHS-CEEEEEETGGGGGGB-TTTT----THHHHHHHHHHHHH---------------CTTEEEE
T ss_pred cchHHHHHHHHHHHHhccC-CEEEEEeCHHHHhcc-Cccc----hhhHHHHHHHHHHh---------------cCCeEEE
Confidence 1233444433333332123 999999999997531 1000 11233333333331 2467788
Q ss_pred EeeCCCC---------CCccCCCCCCCCcceecC-C-CHHHHHHHHHHHhhcCC--CCHHHHHHHhhcCCCCc
Q 019334 199 FTGNDFS---------TIYAPLIRDGRMEKFYWQ-P-NLEDILNIVHRMYEKDG--ITKDEVGSIVKTFPNQA 258 (342)
Q Consensus 199 atTNr~~---------~LdpaLlRpGRfD~~i~v-P-~~~~R~~Il~~~~~~~~--~s~~di~~lvd~f~~~~ 258 (342)
+|+.... ....+| .||....+.+ | +.++-.++++..+...+ ++.+.+..+.....|-+
T Consensus 169 l~g~~~~~l~~~l~~~~~~~~l--~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~~~~~~~i~~~tgG~P 239 (350)
T 2qen_A 169 LTGSEVGLLHDFLKITDYESPL--YGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVPENEIEEAVELLDGIP 239 (350)
T ss_dssp EEESSHHHHHHHHCTTCTTSTT--TTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHTTCH
T ss_pred EECCcHHHHHHHHhhcCCCCcc--ccCccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCH
Confidence 8875432 112223 2566555554 4 77888888887765443 56666766665444544
No 94
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=98.75 E-value=5.9e-09 Score=120.10 Aligned_cols=78 Identities=17% Similarity=0.241 Sum_probs=58.7
Q ss_pred CCCCeEEEeecCCCCCHHHHHHHHHHHh---CCceEEeeccccc----ccccC------------CcHHHHHHHHHHHHH
Q 019334 71 VKVPLILGIWGGKGQGKSFQTELIFQAM---GIEPVIMSAGELE----SERAG------------EPGKLIRERYRTASQ 131 (342)
Q Consensus 71 ~k~PlglgL~GPPG~GKTllaravA~~~---g~~~i~vs~~eL~----s~~~G------------EsEr~iR~~F~~A~e 131 (342)
+..+.+++|+||||||||++|.+++.+. |-..+-++..+.+ .+..| ++|+.++.+++.++
T Consensus 1424 i~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr- 1502 (2050)
T 3cmu_A 1424 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR- 1502 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH-
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHHh-
Confidence 6778899999999999999999998775 3344444444332 23334 67888887777665
Q ss_pred hhhhcCCceEEEeecccccCCC
Q 019334 132 VVQNQGKMSCLMINDIDAGLGR 153 (342)
Q Consensus 132 ~~~~~~~PcILfIDEIDAg~~r 153 (342)
+.+||+||||||++..++
T Consensus 1503 ----~~~~~lVVIDsi~al~p~ 1520 (2050)
T 3cmu_A 1503 ----SGAVDVIVVDSVAALTPK 1520 (2050)
T ss_dssp ----HTCCSEEEESCGGGCCCH
T ss_pred ----cCCCCEEEEcChhHhccc
Confidence 457999999999999974
No 95
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.72 E-value=2.5e-08 Score=91.29 Aligned_cols=35 Identities=14% Similarity=0.167 Sum_probs=30.7
Q ss_pred eEEEeecCCCCCHHHHHHHHHHHhCCceEEeeccc
Q 019334 75 LILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGE 109 (342)
Q Consensus 75 lglgL~GPPG~GKTllaravA~~~g~~~i~vs~~e 109 (342)
..++|+||+|+|||++++.++++.+...+.+++..
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~ 65 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRK 65 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGG
T ss_pred CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchh
Confidence 48999999999999999999999887777777654
No 96
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.71 E-value=1.8e-08 Score=92.66 Aligned_cols=113 Identities=15% Similarity=0.144 Sum_probs=64.2
Q ss_pred HHHHHHHHHhhcCCCCC--eEEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccccccCCcHHHHHHHHHHHHHhhhh
Q 019334 58 CHIVKNYIAHLLNVKVP--LILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQN 135 (342)
Q Consensus 58 ~hi~K~~l~~~~~~k~P--lglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~~~GEsEr~iR~~F~~A~e~~~~ 135 (342)
.+.+|.|+. ..| ..+++|||||||||++|.++|+.++-.++...-. .. .|- .+.
T Consensus 45 ~~~l~~~~~-----~iPkkn~ili~GPPGtGKTt~a~ala~~l~g~i~~fans---------~s-----~f~--l~~--- 100 (212)
T 1tue_A 45 LGALKSFLK-----GTPKKNCLVFCGPANTGKSYFGMSFIHFIQGAVISFVNS---------TS-----HFW--LEP--- 100 (212)
T ss_dssp HHHHHHHHH-----TCTTCSEEEEESCGGGCHHHHHHHHHHHHTCEECCCCCS---------SS-----CGG--GGG---
T ss_pred HHHHHHHHh-----cCCcccEEEEECCCCCCHHHHHHHHHHHhCCCeeeEEec---------cc-----hhh--hcc---
Confidence 556777877 345 5899999999999999999999986443322110 00 010 011
Q ss_pred cCCceEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCC
Q 019334 136 QGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFST 206 (342)
Q Consensus 136 ~~~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~~~ 206 (342)
.....||+|||+|.-+ .+.+...+-+.+|+- .++++--+........-|+|.|||-.-.
T Consensus 101 l~~~kIiiLDEad~~~-----------~~~~d~~lrn~ldG~-~~~iD~Khr~~~~~~~~PlIITtN~~~~ 159 (212)
T 1tue_A 101 LTDTKVAMLDDATTTC-----------WTYFDTYMRNALDGN-PISIDRKHKPLIQLKCPPILLTTNIHPA 159 (212)
T ss_dssp GTTCSSEEEEEECHHH-----------HHHHHHHCHHHHHTC-CEEEC----CCEEECCCCEEEEESSCTT
T ss_pred cCCCCEEEEECCCchh-----------HHHHHHHHHHHhCCC-cccHHHhhcCccccCCCCEEEecCCCcc
Confidence 1124599999999431 122334566666752 2333222222111235699999996433
No 97
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.64 E-value=3.2e-08 Score=88.80 Aligned_cols=123 Identities=15% Similarity=0.110 Sum_probs=76.4
Q ss_pred CCeEEEeecCCCCCHHHHHHHHHHH--------hC-CceEEeeccccccccc-------------CC--cHHHHHHHHHH
Q 019334 73 VPLILGIWGGKGQGKSFQTELIFQA--------MG-IEPVIMSAGELESERA-------------GE--PGKLIRERYRT 128 (342)
Q Consensus 73 ~PlglgL~GPPG~GKTllaravA~~--------~g-~~~i~vs~~eL~s~~~-------------GE--sEr~iR~~F~~ 128 (342)
.|.+.+++||||+|||+.|.+.+.+ .| .++......+|.-.+. +| ....+++.+.
T Consensus 4 ~~mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~- 82 (199)
T 2r2a_A 4 MAEICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIK- 82 (199)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTT-
T ss_pred ceeEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhh-
Confidence 5678999999999999999886433 45 4554555565544332 11 1122222221
Q ss_pred HHHhhhhcCCceEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCCc
Q 019334 129 ASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIY 208 (342)
Q Consensus 129 A~e~~~~~~~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~~~Ld 208 (342)
.. .++.+||+|||.+...+.+..... ..+ + |.++ . ..+....-||.+|+.++.|+
T Consensus 83 ---~~--~~~~~vliIDEAq~l~~~~~~~~e--~~r-l---l~~l-~-------------~~r~~~~~iil~tq~~~~l~ 137 (199)
T 2r2a_A 83 ---KP--ENIGSIVIVDEAQDVWPARSAGSK--IPE-N---VQWL-N-------------THRHQGIDIFVLTQGPKLLD 137 (199)
T ss_dssp ---SG--GGTTCEEEETTGGGTSBCCCTTCC--CCH-H---HHGG-G-------------GTTTTTCEEEEEESCGGGBC
T ss_pred ---cc--ccCceEEEEEChhhhccCccccch--hHH-H---HHHH-H-------------hcCcCCeEEEEECCCHHHHh
Confidence 11 356899999999998754321111 112 2 2111 1 12245678899999999999
Q ss_pred cCCCCCCCCcceecC
Q 019334 209 APLIRDGRMEKFYWQ 223 (342)
Q Consensus 209 paLlRpGRfD~~i~v 223 (342)
.+|+. |++..+.+
T Consensus 138 ~~lr~--ri~~~~~l 150 (199)
T 2r2a_A 138 QNLRT--LVRKHYHI 150 (199)
T ss_dssp HHHHT--TEEEEEEE
T ss_pred HHHHH--HhheEEEE
Confidence 99775 99987765
No 98
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=98.58 E-value=1.1e-07 Score=92.29 Aligned_cols=129 Identities=16% Similarity=0.193 Sum_probs=79.6
Q ss_pred eEEEeecCCCCCHHHHHHHHHHHhC---CceEEeeccccccc-------------ccCCcHHHHHHHHHHHHHhhhhcCC
Q 019334 75 LILGIWGGKGQGKSFQTELIFQAMG---IEPVIMSAGELESE-------------RAGEPGKLIRERYRTASQVVQNQGK 138 (342)
Q Consensus 75 lglgL~GPPG~GKTllaravA~~~g---~~~i~vs~~eL~s~-------------~~GEsEr~iR~~F~~A~e~~~~~~~ 138 (342)
.-++|+|++|||||++|+++....+ -+|+.++++++-.. +.|.... -...|+.|.
T Consensus 161 ~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~~elfg~~~g~~tga~~~-~~g~~~~a~-------- 231 (387)
T 1ny5_A 161 CPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVSS-KEGFFELAD-------- 231 (387)
T ss_dssp SCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHHHHHHCBCTTSSTTCCSC-BCCHHHHTT--------
T ss_pred CCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHHHHhcCCCCCCCCCcccc-cCCceeeCC--------
Confidence 3469999999999999999998765 68999998875321 1222111 122343332
Q ss_pred ceEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCCccCCCCCCCCc
Q 019334 139 MSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRME 218 (342)
Q Consensus 139 PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~~~LdpaLlRpGRfD 218 (342)
-.+||||||+..-. .++..|+..++.-..-.+++. ......|-||+|||+.- ..+++.|+|.
T Consensus 232 ~gtlfldei~~l~~------------~~q~~Ll~~l~~~~~~~~g~~---~~~~~~~rii~at~~~l---~~~~~~g~fr 293 (387)
T 1ny5_A 232 GGTLFLDEIGELSL------------EAQAKLLRVIESGKFYRLGGR---KEIEVNVRILAATNRNI---KELVKEGKFR 293 (387)
T ss_dssp TSEEEEESGGGCCH------------HHHHHHHHHHHHSEECCBTCC---SBEECCCEEEEEESSCH---HHHHHTTSSC
T ss_pred CcEEEEcChhhCCH------------HHHHHHHHHHhcCcEEeCCCC---ceeeccEEEEEeCCCCH---HHHHHcCCcc
Confidence 47999999999742 234456655552111112221 11134678999999742 2578889997
Q ss_pred ce---------ecCCCHHHHH
Q 019334 219 KF---------YWQPNLEDIL 230 (342)
Q Consensus 219 ~~---------i~vP~~~~R~ 230 (342)
+- +.+|...+|.
T Consensus 294 ~dl~~rl~~~~i~lPpLreR~ 314 (387)
T 1ny5_A 294 EDLYYRLGVIEIEIPPLRERK 314 (387)
T ss_dssp HHHHHHHTTEEEECCCGGGCH
T ss_pred HHHHHhhcCCeecCCcchhcc
Confidence 62 2347766663
No 99
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.55 E-value=1.6e-07 Score=110.84 Aligned_cols=136 Identities=12% Similarity=0.141 Sum_probs=94.1
Q ss_pred CCeEEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccccccCCcHHHHHHHHHHHHHhhhhcCCceEEEeecccccCC
Q 019334 73 VPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLG 152 (342)
Q Consensus 73 ~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~~~GEsEr~iR~~F~~A~e~~~~~~~PcILfIDEIDAg~~ 152 (342)
.-+++++.||||||||.+++++|+.+|.++++++..+-.+ .+.+...|..|.+. .+.+.||||+.+-+
T Consensus 644 ~~~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld------~~~lg~~~~g~~~~------Gaw~~~DE~nr~~~ 711 (2695)
T 4akg_A 644 QKYGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFD------YQVLSRLLVGITQI------GAWGCFDEFNRLDE 711 (2695)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCC------HHHHHHHHHHHHHH------TCEEEEETTTSSCH
T ss_pred hCCCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCC------hhHhhHHHHHHHhc------CCEeeehhhhhcCh
Confidence 3478889999999999999999999999999999998776 46677788777643 58999999998643
Q ss_pred CCCCCcccchhHHHHHHHHhh----cCCCCccccCccccccCCCCCccEEEeeC----CCCCCccCCCCCCCCcceec--
Q 019334 153 RFGNTQMTVNNQIVVGTLMNL----SDNPTRVSIGQDWRESDITNRIPIIFTGN----DFSTIYAPLIRDGRMEKFYW-- 222 (342)
Q Consensus 153 r~~~t~~~v~~q~V~~tLl~l----lD~p~~v~l~g~~~~~~~~~~V~VIatTN----r~~~LdpaLlRpGRfD~~i~-- 222 (342)
. + -..+.+++..+ .++-..+...|.- ....++.-|++|-| .-..||.+|.+ || +.++
T Consensus 712 e-------v-Ls~l~~~l~~i~~al~~~~~~i~~~g~~--i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~--~F-r~v~m~ 778 (2695)
T 4akg_A 712 K-------V-LSAVSANIQQIQNGLQVGKSHITLLEEE--TPLSPHTAVFITLNPGYNGRSELPENLKK--SF-REFSMK 778 (2695)
T ss_dssp H-------H-HHHHHHHHHHHHHHHHHTCSEEECSSSE--EECCTTCEEEEEECCCSSSSCCCCHHHHT--TE-EEEECC
T ss_pred H-------H-HHHHHHHHHHHHHHHHcCCcEEeeCCcE--EecCCCceEEEEeCCCccCcccccHHHHh--he-EEEEee
Confidence 1 1 11222222222 2232334444421 12234566888888 55679999988 77 4454
Q ss_pred CCCHHHHHHHH
Q 019334 223 QPNLEDILNIV 233 (342)
Q Consensus 223 vP~~~~R~~Il 233 (342)
+||.+...+|+
T Consensus 779 ~Pd~~~i~ei~ 789 (2695)
T 4akg_A 779 SPQSGTIAEMI 789 (2695)
T ss_dssp CCCHHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 39988877775
No 100
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.52 E-value=9.5e-08 Score=113.86 Aligned_cols=157 Identities=13% Similarity=0.198 Sum_probs=97.7
Q ss_pred HHHHHHHHHHhhcCCCCCeEEEeecCCCCCHHHHHHHHHHH-hCCceEEeecccccccccCCcHHHHHHHHHHHHHhh--
Q 019334 57 LCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQA-MGIEPVIMSAGELESERAGEPGKLIRERYRTASQVV-- 133 (342)
Q Consensus 57 ~~hi~K~~l~~~~~~k~PlglgL~GPPG~GKTllaravA~~-~g~~~i~vs~~eL~s~~~GEsEr~iR~~F~~A~e~~-- 133 (342)
..++++.++. .-.-|+|.||||||||++++...+. .+.+++.++.++-.+ ...+-..+..-.+..
T Consensus 1293 ~~~ll~~ll~------~~~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~Tt------a~~l~~~~e~~~e~~~~ 1360 (3245)
T 3vkg_A 1293 HVDVLHAWLS------EHRPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATT------PELLLKTFDHHCEYKRT 1360 (3245)
T ss_dssp HHHHHHHHHH------TTCCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTCC------HHHHHHHHHHHEEEEEC
T ss_pred HHHHHHHHHH------CCCcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCCC------HHHHHHHHhhcceEEec
Confidence 5566676665 2345789999999999877654444 465677777664442 455555664321110
Q ss_pred --------hh-cCCceEEEeecccccCCCCC--CCcccchhHHHHHHHHhhcCCCCccc-cCccccccCCCCCccEEEee
Q 019334 134 --------QN-QGKMSCLMINDIDAGLGRFG--NTQMTVNNQIVVGTLMNLSDNPTRVS-IGQDWRESDITNRIPIIFTG 201 (342)
Q Consensus 134 --------~~-~~~PcILfIDEIDAg~~r~~--~t~~~v~~q~V~~tLl~llD~p~~v~-l~g~~~~~~~~~~V~VIatT 201 (342)
+. .|+.+|||||||+-- ..+ ++ |.+...|..++|.-+-.- -+++|.. ..++-+|||.
T Consensus 1361 ~~~G~~~~p~~~Gk~~VlFiDDiNmp--~~D~yGt------Q~~ielLrqlld~~g~yd~~~~~~~~---i~d~~~vaam 1429 (3245)
T 3vkg_A 1361 PSGETVLRPTQLGKWLVVFCDEINLP--STDKYGT------QRVITFIRQMVEKGGFWRTSDHTWIK---LDKIQFVGAC 1429 (3245)
T ss_dssp TTSCEEEEESSTTCEEEEEETTTTCC--CCCTTSC------CHHHHHHHHHHHHSEEEETTTTEEEE---ESSEEEEEEE
T ss_pred cCCCcccCCCcCCceEEEEecccCCC--Ccccccc------ccHHHHHHHHHHcCCeEECCCCeEEE---ecCeEEEEEc
Confidence 11 266799999999963 333 33 345666666666210000 0112221 3568899999
Q ss_pred CCC-----CCCccCCCCCCCCcceec-CCCHHHHHHHHHHHhh
Q 019334 202 NDF-----STIYAPLIRDGRMEKFYW-QPNLEDILNIVHRMYE 238 (342)
Q Consensus 202 Nr~-----~~LdpaLlRpGRfD~~i~-vP~~~~R~~Il~~~~~ 238 (342)
|-| ..|+|.|+| ||-.+.. .|+.++-..|+..++.
T Consensus 1430 nPp~~gGr~~l~~Rf~r--~F~vi~i~~ps~esL~~If~til~ 1470 (3245)
T 3vkg_A 1430 NPPTDAGRVQLTHRFLR--HAPILLVDFPSTSSLTQIYGTFNR 1470 (3245)
T ss_dssp CCTTSTTCCCCCHHHHT--TCCEEECCCCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHh--hceEEEeCCCCHHHHHHHHHHHHH
Confidence 987 469999999 8876544 3999999999876543
No 101
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.49 E-value=8.6e-07 Score=76.50 Aligned_cols=81 Identities=15% Similarity=0.135 Sum_probs=53.4
Q ss_pred CCCCCeEEEeecCCCCCHHHHHHHHHHHhCCceEEeeccc------ccc--cccCC---------------cHHHHHHHH
Q 019334 70 NVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGE------LES--ERAGE---------------PGKLIRERY 126 (342)
Q Consensus 70 ~~k~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~e------L~s--~~~GE---------------sEr~iR~~F 126 (342)
++.....++|.||||+|||++++.+|...+-+.+.++..+ +.. ...|- +...++++.
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEGGFSPERLVQMAETRGLNPEEALSRFILFTPSDFKEQRRVI 95 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSCCCCHHHHHHHHHTTTCCHHHHHHHEEEECCTTTSHHHHHH
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCCCCCHHHHHHHHHhcCCChHHHhhcEEEEecCCHHHHHHHH
Confidence 4555578999999999999999999987777777777654 110 00111 011223344
Q ss_pred HHHHHhhhhcCCceEEEeecccccCC
Q 019334 127 RTASQVVQNQGKMSCLMINDIDAGLG 152 (342)
Q Consensus 127 ~~A~e~~~~~~~PcILfIDEIDAg~~ 152 (342)
..++..++ . .|.+|+|||+.++..
T Consensus 96 ~~~~~l~~-~-~~~lliiD~~~~~l~ 119 (220)
T 2cvh_A 96 GSLKKTVD-S-NFALVVVDSITAHYR 119 (220)
T ss_dssp HHHHHHCC-T-TEEEEEEECCCCCTT
T ss_pred HHHHHHhh-c-CCCEEEEcCcHHHhh
Confidence 45544432 2 599999999999863
No 102
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=98.36 E-value=7e-07 Score=75.15 Aligned_cols=37 Identities=16% Similarity=0.147 Sum_probs=32.6
Q ss_pred CeEEEeecCCCCCHHHHHHHHHHHhCCceEEeecccc
Q 019334 74 PLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGEL 110 (342)
Q Consensus 74 PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL 110 (342)
|..+.|.||||+|||++++++|++++.+++.++..++
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~ 39 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSL 39 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchH
Confidence 5688999999999999999999999999998776443
No 103
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=98.33 E-value=5.2e-07 Score=87.25 Aligned_cols=128 Identities=19% Similarity=0.267 Sum_probs=77.7
Q ss_pred eEEEeecCCCCCHHHHHHHHHHHhCCc--eEEeecccccccc-------------cCCcHHHHHHHHHHHHHhhhhcCCc
Q 019334 75 LILGIWGGKGQGKSFQTELIFQAMGIE--PVIMSAGELESER-------------AGEPGKLIRERYRTASQVVQNQGKM 139 (342)
Q Consensus 75 lglgL~GPPG~GKTllaravA~~~g~~--~i~vs~~eL~s~~-------------~GEsEr~iR~~F~~A~e~~~~~~~P 139 (342)
.-++|+|++||||+++|+++....+-. |+.++++.+-... .|.... -...|+.|. -
T Consensus 153 ~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~lfg~~~g~~tga~~~-~~g~~~~a~--------~ 223 (368)
T 3dzd_A 153 APVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESELFGHEKGAFTGALTR-KKGKLELAD--------Q 223 (368)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHHHHEECSCSSSSCCCC-EECHHHHTT--------T
T ss_pred hhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHHhcCccccccCCcccc-cCChHhhcC--------C
Confidence 348899999999999999999877654 9999998653211 111100 012343331 3
Q ss_pred eEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCCCCccCCCCCCCCcc
Q 019334 140 SCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFSTIYAPLIRDGRMEK 219 (342)
Q Consensus 140 cILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~~~LdpaLlRpGRfD~ 219 (342)
-.||||||+..-. .++..|+..++.-+...+++. ......|-||+|||+. ...++..|+|.+
T Consensus 224 gtlfldei~~l~~------------~~Q~~Ll~~l~~~~~~~~g~~---~~~~~~~rii~at~~~---l~~~v~~g~fr~ 285 (368)
T 3dzd_A 224 GTLFLDEVGELDQ------------RVQAKLLRVLETGSFTRLGGN---QKIEVDIRVISATNKN---LEEEIKKGNFRE 285 (368)
T ss_dssp SEEEEETGGGSCH------------HHHHHHHHHHHHSEECCBTCC---CBEECCCEEEEEESSC---HHHHHHTTSSCH
T ss_pred CeEEecChhhCCH------------HHHHHHHHHHHhCCcccCCCC---cceeeeeEEEEecCCC---HHHHHHcCCccH
Confidence 5799999999742 234456665552111112221 1112367799999963 235888999976
Q ss_pred ---------eecCCCHHHH
Q 019334 220 ---------FYWQPNLEDI 229 (342)
Q Consensus 220 ---------~i~vP~~~~R 229 (342)
.+.+|...+|
T Consensus 286 dL~~rl~~~~i~lPpLreR 304 (368)
T 3dzd_A 286 DLYYRLSVFQIYLPPLRER 304 (368)
T ss_dssp HHHHHHTSEEEECCCGGGS
T ss_pred HHHHHhCCeEEeCCChhhc
Confidence 2335766555
No 104
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=98.33 E-value=2.3e-06 Score=77.66 Aligned_cols=63 Identities=17% Similarity=0.251 Sum_probs=46.2
Q ss_pred cccHHHHHHHHHHHHHHHHHhhcCCCCCeEEEeecCCCCCHHHHHHHHHHHhCCceEEeecccc
Q 019334 47 YIAPVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGEL 110 (342)
Q Consensus 47 y~~~~f~d~l~~hi~K~~l~~~~~~k~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL 110 (342)
|.++.|...+ ..+.+.++......+.|..++|.||||||||++++++++.++...+.+++..+
T Consensus 6 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 6 YTDSEFKHAL-ARNLRSLTRGKKSSKQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp CCHHHHHHHH-HHHHHHHHTTCCCCSSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred cCHHHHHHHH-HHHHHHHHccCCcccCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 4444444333 33555555444456678899999999999999999999999977788887765
No 105
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=98.32 E-value=9e-07 Score=102.28 Aligned_cols=82 Identities=13% Similarity=0.183 Sum_probs=66.0
Q ss_pred CCCCCeEEEeecCCCCCHHHHHHHHHHHhC---CceEEeecccccccc----cC--------CcHHHHHHHHHHHHHhhh
Q 019334 70 NVKVPLILGIWGGKGQGKSFQTELIFQAMG---IEPVIMSAGELESER----AG--------EPGKLIRERYRTASQVVQ 134 (342)
Q Consensus 70 ~~k~PlglgL~GPPG~GKTllaravA~~~g---~~~i~vs~~eL~s~~----~G--------EsEr~iR~~F~~A~e~~~ 134 (342)
|+.+...++|+|+||||||++|..+|..+. -+++.+|..+..+.+ .| +++..+.++++.++++.+
T Consensus 728 Gl~~G~lilIaG~PG~GKTtLalqlA~~~a~~g~~VlyiS~Ees~~ql~A~rlG~~~~~l~i~~~~~i~~i~~~~r~l~~ 807 (2050)
T 3cmu_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 807 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred CcCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECCCcHHHHHHHHcCCCccceEEecCCCHHHHHHHHHHHhh
Confidence 466778999999999999999999998764 468899998877765 45 455667888888876543
Q ss_pred hcCCceEEEeecccccCC
Q 019334 135 NQGKMSCLMINDIDAGLG 152 (342)
Q Consensus 135 ~~~~PcILfIDEIDAg~~ 152 (342)
..+|++||||.|++..+
T Consensus 808 -~~~~~LVIIDsLq~i~~ 824 (2050)
T 3cmu_A 808 -SGAVDVIVVDSVAALTP 824 (2050)
T ss_dssp -HTCCSEEEESCGGGCCC
T ss_pred -ccCCCEEEEcchhhhcc
Confidence 57899999999999875
No 106
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=98.28 E-value=2.6e-06 Score=74.63 Aligned_cols=82 Identities=12% Similarity=0.119 Sum_probs=51.9
Q ss_pred CCCCCeEEEeecCCCCCHHHHHHHHHHH--h-------CCceEEeeccccccc--------ccCC---------------
Q 019334 70 NVKVPLILGIWGGKGQGKSFQTELIFQA--M-------GIEPVIMSAGELESE--------RAGE--------------- 117 (342)
Q Consensus 70 ~~k~PlglgL~GPPG~GKTllaravA~~--~-------g~~~i~vs~~eL~s~--------~~GE--------------- 117 (342)
++..-..++|.||||||||++++.+|.. . +-..+.++..+.++. ..|-
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 99 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAF 99 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEecC
Confidence 3444468999999999999999999985 2 456677776552110 0111
Q ss_pred cHHHHHHHHHHHHHhhhhcCCceEEEeecccccCC
Q 019334 118 PGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLG 152 (342)
Q Consensus 118 sEr~iR~~F~~A~e~~~~~~~PcILfIDEIDAg~~ 152 (342)
+...+.+.+..+.+.+. ...|.+|+|||+-++..
T Consensus 100 ~~~~~~~~~~~~~~~~~-~~~~~lliiD~~~~~~~ 133 (243)
T 1n0w_A 100 NTDHQTQLLYQASAMMV-ESRYALLIVDSATALYR 133 (243)
T ss_dssp SHHHHHHHHHHHHHHHH-HSCEEEEEEETSSGGGC
T ss_pred CHHHHHHHHHHHHHHHh-cCCceEEEEeCchHHHH
Confidence 11122223333434433 46799999999999763
No 107
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=98.26 E-value=3.3e-06 Score=78.91 Aligned_cols=62 Identities=16% Similarity=0.201 Sum_probs=48.0
Q ss_pred cHHHHHHHHHHHHHHHHHhhcCCCCCeEEEeecCCCCCHHHHHHHHHHHhCCceEEeecccc
Q 019334 49 APVFMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGEL 110 (342)
Q Consensus 49 ~~~f~d~l~~hi~K~~l~~~~~~k~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL 110 (342)
++.-..++...+++.++........|..++|.||||||||++|++++++++...++||+..+
T Consensus 8 s~~~~~~~~~~~~~~~l~~~~~~~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~ 69 (287)
T 1gvn_B 8 TDKQFENRLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTF 69 (287)
T ss_dssp CHHHHHHHHHHHHHHHHTTCCCCSSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHH
T ss_pred CHHHHHHHHHHHHHHHhccccCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHh
Confidence 44555556667777777654555678999999999999999999999999656778887554
No 108
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=98.20 E-value=7.7e-07 Score=84.07 Aligned_cols=40 Identities=15% Similarity=0.197 Sum_probs=32.1
Q ss_pred HHHHHHHHHHhhcCCCCC--eEEEeecCCCCCHHHHHHHHHHHhCC
Q 019334 57 LCHIVKNYIAHLLNVKVP--LILGIWGGKGQGKSFQTELIFQAMGI 100 (342)
Q Consensus 57 ~~hi~K~~l~~~~~~k~P--lglgL~GPPG~GKTllaravA~~~g~ 100 (342)
....+++|+. -++| .+++||||||||||++|+|+|+.++.
T Consensus 89 ~~~~l~~~l~----~~~~~~n~~~l~GppgtGKt~~a~ala~~~~l 130 (267)
T 1u0j_A 89 AASVFLGWAT----KKFGKRNTIWLFGPATTGKTNIAEAIAHTVPF 130 (267)
T ss_dssp HHHHHHHHHT----TCSTTCCEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHh----CCCCCCcEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 4455778887 3434 48999999999999999999998765
No 109
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.18 E-value=2.8e-06 Score=74.21 Aligned_cols=28 Identities=25% Similarity=0.357 Sum_probs=24.8
Q ss_pred EEEeecCCCCCHHHHHHHHHHHhCCceE
Q 019334 76 ILGIWGGKGQGKSFQTELIFQAMGIEPV 103 (342)
Q Consensus 76 glgL~GPPG~GKTllaravA~~~g~~~i 103 (342)
.++|.||+|||||++++++++.+++.+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~~ 29 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRAI 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcCC
Confidence 5789999999999999999999986554
No 110
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=98.12 E-value=8.4e-06 Score=70.22 Aligned_cols=38 Identities=13% Similarity=0.238 Sum_probs=28.1
Q ss_pred CCCCCeEEEeecCCCCCHHHHHHHHHHHh---CCceEEeec
Q 019334 70 NVKVPLILGIWGGKGQGKSFQTELIFQAM---GIEPVIMSA 107 (342)
Q Consensus 70 ~~k~PlglgL~GPPG~GKTllaravA~~~---g~~~i~vs~ 107 (342)
++.....++|.||||||||++++.+|... +-..+.++.
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~ 59 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTT 59 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEES
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEc
Confidence 34445689999999999999999999543 445555443
No 111
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=98.11 E-value=1.7e-06 Score=78.81 Aligned_cols=43 Identities=26% Similarity=0.349 Sum_probs=37.1
Q ss_pred cCCCCCeEEEeecCCCCCHHHHHHHHHHHhCCceEEeeccccccc
Q 019334 69 LNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESE 113 (342)
Q Consensus 69 ~~~k~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~ 113 (342)
...+-|++++|.||||||||++|+.+|+++| +.++|.++|+..
T Consensus 24 ~~~~k~kiI~llGpPGsGKgTqa~~L~~~~g--~~hIstGdllR~ 66 (217)
T 3umf_A 24 QKLAKAKVIFVLGGPGSGKGTQCEKLVQKFH--FNHLSSGDLLRA 66 (217)
T ss_dssp CCTTSCEEEEEECCTTCCHHHHHHHHHHHHC--CEEECHHHHHHH
T ss_pred hhccCCcEEEEECCCCCCHHHHHHHHHHHHC--CceEcHHHHHHH
Confidence 3456788999999999999999999999998 567888888864
No 112
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.08 E-value=6.3e-06 Score=79.55 Aligned_cols=83 Identities=16% Similarity=0.217 Sum_probs=53.4
Q ss_pred CCCCCeEEEeecCCCCCHHHHHHHHHHHh---CCceEEeeccccccc----ccCCcH--------HHHHHHHHHHHHhhh
Q 019334 70 NVKVPLILGIWGGKGQGKSFQTELIFQAM---GIEPVIMSAGELESE----RAGEPG--------KLIRERYRTASQVVQ 134 (342)
Q Consensus 70 ~~k~PlglgL~GPPG~GKTllaravA~~~---g~~~i~vs~~eL~s~----~~GEsE--------r~iR~~F~~A~e~~~ 134 (342)
|+..-..++|+||||||||++|..+|... |-..+.++..+-.+. ..|-.. ..+.+.++.+..+++
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVR 136 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHh
Confidence 34444679999999999999999988653 556666666543322 123110 012334444444443
Q ss_pred hcCCceEEEeecccccCCC
Q 019334 135 NQGKMSCLMINDIDAGLGR 153 (342)
Q Consensus 135 ~~~~PcILfIDEIDAg~~r 153 (342)
..+|++|+||++.+..++
T Consensus 137 -~~~~~lIVIDsl~~l~~~ 154 (349)
T 2zr9_A 137 -SGALDIIVIDSVAALVPR 154 (349)
T ss_dssp -TTCCSEEEEECGGGCCCH
T ss_pred -cCCCCEEEEcChHhhcch
Confidence 567999999999998853
No 113
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=98.07 E-value=3.3e-06 Score=71.59 Aligned_cols=44 Identities=14% Similarity=-0.003 Sum_probs=34.7
Q ss_pred CCeEEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccccccCCc
Q 019334 73 VPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEP 118 (342)
Q Consensus 73 ~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~~~GEs 118 (342)
.+..++|.||||||||++++++|+++|++++. ..++.....|.+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l~~~~i~--~d~~~~~~~g~~ 47 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLTKRILYD--SDKEIEKRTGAD 47 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHHCCCEEE--HHHHHHHHHTSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCCEEE--ChHHHHHHcCCC
Confidence 35678899999999999999999999988765 455555555654
No 114
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=98.04 E-value=6.7e-06 Score=68.97 Aligned_cols=42 Identities=29% Similarity=0.225 Sum_probs=33.8
Q ss_pred eEEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccccccCCc
Q 019334 75 LILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEP 118 (342)
Q Consensus 75 lglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~~~GEs 118 (342)
..++|.|+||||||++++.+|+++|++++. ..++.....|.+
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id--~D~~~~~~~g~~ 49 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLD--TDMIISERVGLS 49 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEE--HHHHHHHHHTSC
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEE--ChHHHHHHhCCC
Confidence 578999999999999999999999998765 455555445554
No 115
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=98.04 E-value=9.9e-06 Score=73.90 Aligned_cols=71 Identities=11% Similarity=0.166 Sum_probs=47.7
Q ss_pred CCeEEEeecCCCCCHHHHHHHHHHH---hCCceEEeeccccccc---ccCCcHHHHHHHHHHHHHhhhhcCCceEEEeec
Q 019334 73 VPLILGIWGGKGQGKSFQTELIFQA---MGIEPVIMSAGELESE---RAGEPGKLIRERYRTASQVVQNQGKMSCLMIND 146 (342)
Q Consensus 73 ~PlglgL~GPPG~GKTllaravA~~---~g~~~i~vs~~eL~s~---~~GEsEr~iR~~F~~A~e~~~~~~~PcILfIDE 146 (342)
.|..+.|.|+||||||++|+.++.. .|.+++.++..++... |....+..++.....+.+.+- .+ ..++||.
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~~~l~~~~~~~e~~~~~~~~~~i~~~l--~~-~~vIiD~ 79 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRESFPVWKEKYEEFIKKSTYRLIDSAL--KN-YWVIVDD 79 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHHTTSSSCCGGGHHHHHHHHHHHHHHHH--TT-SEEEECS
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHHHHHhhhhHHHHHHHHHHHHHHHHHHh--hC-CEEEEeC
Confidence 4678899999999999999999998 8988887777655433 333456666655433322211 23 5556664
No 116
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=98.01 E-value=4.1e-06 Score=70.99 Aligned_cols=34 Identities=12% Similarity=0.272 Sum_probs=30.6
Q ss_pred CCCCeEEEeecCCCCCHHHHHHHHHHHhCCceEE
Q 019334 71 VKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVI 104 (342)
Q Consensus 71 ~k~PlglgL~GPPG~GKTllaravA~~~g~~~i~ 104 (342)
.+.|..+.|.||||||||++++.+++.+|.+++.
T Consensus 2 ~~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~ 35 (193)
T 2rhm_A 2 MQTPALIIVTGHPATGKTTLSQALATGLRLPLLS 35 (193)
T ss_dssp CSCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEec
Confidence 4668899999999999999999999999987765
No 117
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.00 E-value=9.7e-06 Score=79.05 Aligned_cols=82 Identities=13% Similarity=0.161 Sum_probs=53.4
Q ss_pred CCCCCeEEEeecCCCCCHHHHHHHHHHHh---CCceEEeecccccccc----cCC--------cHHHHHHHHHHHHHhhh
Q 019334 70 NVKVPLILGIWGGKGQGKSFQTELIFQAM---GIEPVIMSAGELESER----AGE--------PGKLIRERYRTASQVVQ 134 (342)
Q Consensus 70 ~~k~PlglgL~GPPG~GKTllaravA~~~---g~~~i~vs~~eL~s~~----~GE--------sEr~iR~~F~~A~e~~~ 134 (342)
|+..-.+++|+||||||||++|..+|..+ |-..+.+++.+..+.. .|- .+..+.+....+...++
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVR 136 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhh
Confidence 34444689999999999999999999764 5567777776543310 110 01112233444443333
Q ss_pred hcCCceEEEeecccccCC
Q 019334 135 NQGKMSCLMINDIDAGLG 152 (342)
Q Consensus 135 ~~~~PcILfIDEIDAg~~ 152 (342)
.++|.+++||.|-+..+
T Consensus 137 -~~~~dlvVIDSi~~l~~ 153 (356)
T 3hr8_A 137 -SGVVDLIVVDSVAALVP 153 (356)
T ss_dssp -TSCCSEEEEECTTTCCC
T ss_pred -hcCCCeEEehHhhhhcC
Confidence 47899999999999876
No 118
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.99 E-value=9e-06 Score=68.77 Aligned_cols=41 Identities=15% Similarity=0.141 Sum_probs=32.2
Q ss_pred EEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccccccCCc
Q 019334 76 ILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEP 118 (342)
Q Consensus 76 glgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~~~GEs 118 (342)
.+.|.||||||||++++++|+++|++++ +..++.....|.+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~--d~d~~~~~~~g~~ 46 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFL--DSDFLIEQKFNQK 46 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEE--EHHHHHHHHHTSC
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEE--cccHHHHHHcCCC
Confidence 5788999999999999999999998765 4556554444443
No 119
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.97 E-value=9.4e-06 Score=70.29 Aligned_cols=29 Identities=17% Similarity=0.322 Sum_probs=24.4
Q ss_pred CCCCCeEEEeecCCCCCHHHHHHHHHHHh
Q 019334 70 NVKVPLILGIWGGKGQGKSFQTELIFQAM 98 (342)
Q Consensus 70 ~~k~PlglgL~GPPG~GKTllaravA~~~ 98 (342)
++..--.++|.||+|||||++++.++...
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34444689999999999999999999854
No 120
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.96 E-value=7.2e-06 Score=68.61 Aligned_cols=43 Identities=21% Similarity=0.208 Sum_probs=33.1
Q ss_pred CeEEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccccccCCc
Q 019334 74 PLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEP 118 (342)
Q Consensus 74 PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~~~GEs 118 (342)
+..++|.||||||||++++++|+.++..+ +++.++.....|.+
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~~~~--id~d~~~~~~~~~~ 46 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEF--YDSDQEIEKRTGAD 46 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTTCEE--EEHHHHHHHHHTSC
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCE--EeccHHHHHHhCcC
Confidence 46789999999999999999999999654 45665554444443
No 121
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.96 E-value=1.7e-05 Score=66.13 Aligned_cols=35 Identities=20% Similarity=0.209 Sum_probs=27.9
Q ss_pred CeEEEeecCCCCCHHHHHHHHHH-HhCCceEEeecccc
Q 019334 74 PLILGIWGGKGQGKSFQTELIFQ-AMGIEPVIMSAGEL 110 (342)
Q Consensus 74 PlglgL~GPPG~GKTllaravA~-~~g~~~i~vs~~eL 110 (342)
|..++|.||||+|||++|+.+++ ..|+ ..++...+
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~~~~~--~~i~~d~~ 37 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGF--YNINRDDY 37 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTE--EEECHHHH
T ss_pred CeEEEEecCCCCCHHHHHHHHHhhcCCc--EEecHHHH
Confidence 67899999999999999999999 5664 44444443
No 122
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.95 E-value=5.5e-06 Score=69.80 Aligned_cols=37 Identities=41% Similarity=0.624 Sum_probs=31.2
Q ss_pred CeEEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccc
Q 019334 74 PLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELES 112 (342)
Q Consensus 74 PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s 112 (342)
|..++|.||||||||++|+.+|+.+|+++ ++.++++.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~~~~--i~~d~~~~ 39 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYGYTH--LSAGELLR 39 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEE--EEHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCeE--EeHHHHHH
Confidence 68899999999999999999999999755 55555553
No 123
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.94 E-value=7.9e-06 Score=70.97 Aligned_cols=46 Identities=13% Similarity=0.052 Sum_probs=34.6
Q ss_pred CCCCeEEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccccccCCc
Q 019334 71 VKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEP 118 (342)
Q Consensus 71 ~k~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~~~GEs 118 (342)
+..+..+.|.||||||||++++++|+.+|.+++. ..++.....|.+
T Consensus 22 ~~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~--~d~~~~~~~g~~ 67 (199)
T 3vaa_A 22 SNAMVRIFLTGYMGAGKTTLGKAFARKLNVPFID--LDWYIEERFHKT 67 (199)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEE--HHHHHHHHHTSC
T ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEc--chHHHHHHhCCc
Confidence 3445689999999999999999999999988764 445554444443
No 124
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.94 E-value=4e-05 Score=74.68 Aligned_cols=83 Identities=16% Similarity=0.164 Sum_probs=53.0
Q ss_pred CCCCCeEEEeecCCCCCHHHHHHHHHHHh---CCceEEeecccccccc----cCCcH--------HHHHHHHHHHHHhhh
Q 019334 70 NVKVPLILGIWGGKGQGKSFQTELIFQAM---GIEPVIMSAGELESER----AGEPG--------KLIRERYRTASQVVQ 134 (342)
Q Consensus 70 ~~k~PlglgL~GPPG~GKTllaravA~~~---g~~~i~vs~~eL~s~~----~GEsE--------r~iR~~F~~A~e~~~ 134 (342)
|+....+++|+||||||||++|..+|..+ |-+.+.++...-.+.+ .|-.- ..+.+++..+..+++
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~ 149 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVR 149 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHh
Confidence 45555689999999999999999888654 5567777765433321 12110 011223333333332
Q ss_pred hcCCceEEEeecccccCCC
Q 019334 135 NQGKMSCLMINDIDAGLGR 153 (342)
Q Consensus 135 ~~~~PcILfIDEIDAg~~r 153 (342)
.+.+++|+||.|.+..++
T Consensus 150 -~~~~~lVVIDsl~~l~~~ 167 (366)
T 1xp8_A 150 -SGAIDVVVVDSVAALTPR 167 (366)
T ss_dssp -TTCCSEEEEECTTTCCCS
T ss_pred -cCCCCEEEEeChHHhccc
Confidence 567999999999998764
No 125
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.94 E-value=2.3e-05 Score=68.71 Aligned_cols=38 Identities=18% Similarity=0.226 Sum_probs=27.9
Q ss_pred CCCCCeEEEeecCCCCCHHHHHHHHH--H--HhCCceEEeec
Q 019334 70 NVKVPLILGIWGGKGQGKSFQTELIF--Q--AMGIEPVIMSA 107 (342)
Q Consensus 70 ~~k~PlglgL~GPPG~GKTllaravA--~--~~g~~~i~vs~ 107 (342)
++..--.++|.||+|||||+++++++ . ..+-..+.++.
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~ 67 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEc
Confidence 44455689999999999999999988 3 23444555554
No 126
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.93 E-value=6e-06 Score=94.31 Aligned_cols=82 Identities=15% Similarity=0.240 Sum_probs=58.9
Q ss_pred CCCCCeEEEeecCCCCCHHHHHHHHHHHh---CCceEEeeccccc----ccccC--------CcHHHHHHHHHHHHHhhh
Q 019334 70 NVKVPLILGIWGGKGQGKSFQTELIFQAM---GIEPVIMSAGELE----SERAG--------EPGKLIRERYRTASQVVQ 134 (342)
Q Consensus 70 ~~k~PlglgL~GPPG~GKTllaravA~~~---g~~~i~vs~~eL~----s~~~G--------EsEr~iR~~F~~A~e~~~ 134 (342)
|+.+...++|+||||+|||++|..+|.++ |-+++.++..+.. ....| ..+..+.+++..+.++++
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ees~~ql~A~~lGvd~~~L~i~~~~~leei~~~l~~lv~ 807 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 807 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEeccchHHHHHHHHcCCChhheEEecCCcHHHHHHHHHHHHH
Confidence 46666789999999999999999998654 4467777776555 33344 122244556666655443
Q ss_pred hcCCceEEEeecccccCC
Q 019334 135 NQGKMSCLMINDIDAGLG 152 (342)
Q Consensus 135 ~~~~PcILfIDEIDAg~~ 152 (342)
..+|++|+||.|.+..+
T Consensus 808 -~~~~~lVVIDsLq~l~~ 824 (1706)
T 3cmw_A 808 -SGAVDVIVVDSVAALTP 824 (1706)
T ss_dssp -HTCCSEEEESCSTTCCC
T ss_pred -ccCCCEEEEechhhhcc
Confidence 57899999999999885
No 127
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.91 E-value=8e-06 Score=70.61 Aligned_cols=40 Identities=28% Similarity=0.362 Sum_probs=32.6
Q ss_pred CCCCeEEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccc
Q 019334 71 VKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELES 112 (342)
Q Consensus 71 ~k~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s 112 (342)
...|..++|.||||||||++|+.+|+.+|.+++ +.++++.
T Consensus 17 ~~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i--~~d~~~r 56 (201)
T 2cdn_A 17 RGSHMRVLLLGPPGAGKGTQAVKLAEKLGIPQI--STGELFR 56 (201)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHHTCCEE--EHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCCcEE--ehhHHHH
Confidence 456778999999999999999999999997754 4445543
No 128
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.91 E-value=5.4e-06 Score=74.44 Aligned_cols=35 Identities=31% Similarity=0.431 Sum_probs=30.7
Q ss_pred EEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccc
Q 019334 76 ILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELES 112 (342)
Q Consensus 76 glgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s 112 (342)
++.|.||||+|||++|+.+|+++| +.++|.|+|+.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g--~~~istGdllR 36 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG--FVHISTGDILR 36 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC--CEEEEHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC--CeEEcHHHHHH
Confidence 567889999999999999999998 56788888875
No 129
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.88 E-value=8e-06 Score=69.32 Aligned_cols=39 Identities=38% Similarity=0.493 Sum_probs=31.7
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccc
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELES 112 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s 112 (342)
+.|..++|.||||||||++|+.+|+.+|.+++ +.++++.
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i--~~d~~~~ 45 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKYGYTHL--STGDLLR 45 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHHCCEEE--EHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHhCCeEE--cHHHHHH
Confidence 35678999999999999999999999997655 4445554
No 130
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.87 E-value=1e-05 Score=68.05 Aligned_cols=39 Identities=33% Similarity=0.489 Sum_probs=31.9
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccc
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELES 112 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s 112 (342)
+.|..++|.||||||||++|+.+++.+|++++ +.++++.
T Consensus 4 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i--~~d~~~~ 42 (194)
T 1qf9_A 4 SKPNVVFVLGGPGSGKGTQCANIVRDFGWVHL--SAGDLLR 42 (194)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHHHHCCEEE--EHHHHHH
T ss_pred CcCcEEEEECCCCCCHHHHHHHHHHHhCCeEe--eHHHHHH
Confidence 45788999999999999999999999996554 5555554
No 131
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.87 E-value=4.2e-05 Score=73.51 Aligned_cols=80 Identities=9% Similarity=0.146 Sum_probs=52.1
Q ss_pred CCCCeEEEeecCCCCCHHHHHHHHHHHhC---------CceEEeeccccccc--------c-------------cCC--c
Q 019334 71 VKVPLILGIWGGKGQGKSFQTELIFQAMG---------IEPVIMSAGELESE--------R-------------AGE--P 118 (342)
Q Consensus 71 ~k~PlglgL~GPPG~GKTllaravA~~~g---------~~~i~vs~~eL~s~--------~-------------~GE--s 118 (342)
+..-.+++|+||||||||++|+.+|.... -..+.+++-+.+.. . +.. .
T Consensus 128 i~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i~~i~q~~~~~~~~v~~ni~~~~~~~ 207 (349)
T 1pzn_A 128 IETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVARAFN 207 (349)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHHHHHHHTTTCCHHHHGGGEEEEECCS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHHHHHHHHcCCCHHHHhhCEEEEecCC
Confidence 33336799999999999999999998872 24466766543210 0 000 0
Q ss_pred HHHHHHHHHHHHHhhhhc-----CCceEEEeecccccC
Q 019334 119 GKLIRERYRTASQVVQNQ-----GKMSCLMINDIDAGL 151 (342)
Q Consensus 119 Er~iR~~F~~A~e~~~~~-----~~PcILfIDEIDAg~ 151 (342)
.....+++..+...+. . ..|.+|+|||+=++.
T Consensus 208 ~~~~~~~l~~~~~~~~-~lS~G~~~~~llIlDs~ta~l 244 (349)
T 1pzn_A 208 SNHQMLLVQQAEDKIK-ELLNTDRPVKLLIVDSLTSHF 244 (349)
T ss_dssp HHHHHHHHHHHHHHHH-HSSSSSSCEEEEEEETSSTTH
T ss_pred hHHHHHHHHHHHHHHH-HhccccCCCCEEEEeCchHhh
Confidence 1123445555655553 3 689999999999876
No 132
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.86 E-value=8.5e-06 Score=69.22 Aligned_cols=40 Identities=28% Similarity=0.245 Sum_probs=35.0
Q ss_pred CCCCeEEEeecCCCCCHHHHHHHHHHHhCCceEEeecccc
Q 019334 71 VKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGEL 110 (342)
Q Consensus 71 ~k~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL 110 (342)
++.+..++|.||||||||++++++|+..+...+.+++.++
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~ 45 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDL 45 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccch
Confidence 5667889999999999999999999998888888887665
No 133
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.86 E-value=9.4e-06 Score=68.81 Aligned_cols=34 Identities=15% Similarity=0.137 Sum_probs=29.3
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHhCCceEEe
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIM 105 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~~g~~~i~v 105 (342)
..+..++|.||||||||++++++|+.+|+.++.+
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~ 42 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKSGLKYINV 42 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEH
Confidence 3456788999999999999999999999887654
No 134
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.86 E-value=7.3e-06 Score=69.58 Aligned_cols=42 Identities=21% Similarity=0.242 Sum_probs=32.6
Q ss_pred eEEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccccccCCc
Q 019334 75 LILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEP 118 (342)
Q Consensus 75 lglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~~~GEs 118 (342)
..++|.|+||||||++|+.+|+.+|++++ +..++.....|.+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~i--d~D~~~~~~~g~~ 44 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGVGLL--DTDVAIEQRTGRS 44 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTCCEE--EHHHHHHHHHSSC
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCEE--eCchHHHHHcCCC
Confidence 45889999999999999999999998865 4555554444443
No 135
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.86 E-value=2.5e-05 Score=65.02 Aligned_cols=41 Identities=22% Similarity=0.175 Sum_probs=32.2
Q ss_pred EEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccccccCCc
Q 019334 76 ILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEP 118 (342)
Q Consensus 76 glgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~~~GEs 118 (342)
.++|.|+||||||++++.+++.+|++++ +..++.....|.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i--~~d~~~~~~~g~~ 42 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFY--DVDEEVQKREGLS 42 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEE--EHHHHHHHHHTSC
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEE--ECcHHHHHHcCCC
Confidence 5789999999999999999999998766 4455554444543
No 136
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.85 E-value=8.6e-06 Score=69.30 Aligned_cols=38 Identities=37% Similarity=0.475 Sum_probs=31.2
Q ss_pred CCeEEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccc
Q 019334 73 VPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELES 112 (342)
Q Consensus 73 ~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s 112 (342)
.|..++|.||||||||++|+.+|+.+|++ .++.++++.
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~--~i~~d~~~~ 48 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVEKYGFT--HLSTGELLR 48 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHHHHTCE--EEEHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCe--EEcHHHHHH
Confidence 46789999999999999999999999955 455555553
No 137
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.84 E-value=1e-05 Score=71.03 Aligned_cols=39 Identities=15% Similarity=0.269 Sum_probs=31.5
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccc
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELES 112 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s 112 (342)
+.|..++|.||||||||++|+.+|+.+|+++ ++.++++.
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~--i~~d~~~~ 40 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERFHAAH--LATGDMLR 40 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHHCCEE--EEHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHcCceE--EehhHHHH
Confidence 4577899999999999999999999999765 44555554
No 138
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.84 E-value=1.2e-05 Score=69.16 Aligned_cols=39 Identities=28% Similarity=0.411 Sum_probs=31.9
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccc
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELES 112 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s 112 (342)
+.|..++|.||||||||++|+.+|+++|++++ +.++++.
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i--~~d~~~~ 51 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDYSFVHL--SAGDLLR 51 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHSSCEEE--EHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHcCceEE--eHHHHHH
Confidence 45678999999999999999999999997554 4455554
No 139
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.84 E-value=9.8e-06 Score=66.34 Aligned_cols=30 Identities=30% Similarity=0.432 Sum_probs=26.5
Q ss_pred eEEEeecCCCCCHHHHHHHHHHHhCCceEEe
Q 019334 75 LILGIWGGKGQGKSFQTELIFQAMGIEPVIM 105 (342)
Q Consensus 75 lglgL~GPPG~GKTllaravA~~~g~~~i~v 105 (342)
..++|.||||||||++|+++ +++|.+++.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 46889999999999999999 9999887654
No 140
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.83 E-value=1.3e-05 Score=66.32 Aligned_cols=36 Identities=11% Similarity=-0.003 Sum_probs=29.3
Q ss_pred eEEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccc
Q 019334 75 LILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELES 112 (342)
Q Consensus 75 lglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s 112 (342)
..++|.||||||||++++.+++.+|.+++. ..++..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~~~~i~--~d~~~~ 37 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELKYPIIK--GSSFEL 37 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHCCCEEE--CCCHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeeec--Cccccc
Confidence 368899999999999999999999987754 444443
No 141
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.80 E-value=1.4e-05 Score=72.39 Aligned_cols=41 Identities=24% Similarity=0.195 Sum_probs=34.1
Q ss_pred CCCCeEEEeecCCCCCHHHHHHHHHHHhCCceEEeeccccccc
Q 019334 71 VKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESE 113 (342)
Q Consensus 71 ~k~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~ 113 (342)
.+.|..++|.||||+|||++|+.+++++|+ .+++.++++..
T Consensus 26 ~~~~~~I~l~G~~GsGKsT~a~~L~~~~g~--~~is~~~~~r~ 66 (243)
T 3tlx_A 26 SKPDGRYIFLGAPGSGKGTQSLNLKKSHCY--CHLSTGDLLRE 66 (243)
T ss_dssp TSCCEEEEEECCTTSSHHHHHHHHHHHHCC--EEEEHHHHHHH
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHhCC--eEEecHHHHHH
Confidence 357889999999999999999999999985 45566666654
No 142
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.79 E-value=1.6e-05 Score=68.78 Aligned_cols=36 Identities=31% Similarity=0.537 Sum_probs=29.4
Q ss_pred CeEEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccc
Q 019334 74 PLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELES 112 (342)
Q Consensus 74 PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s 112 (342)
+..++|.||||||||++++.+|+ +|.+++ ++.++..
T Consensus 2 ~~~i~l~G~~GsGKST~~~~La~-lg~~~i--d~d~~~~ 37 (206)
T 1jjv_A 2 TYIVGLTGGIGSGKTTIANLFTD-LGVPLV--DADVVAR 37 (206)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHT-TTCCEE--EHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH-CCCccc--chHHHHH
Confidence 46799999999999999999988 887655 5666543
No 143
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.78 E-value=7.1e-05 Score=65.36 Aligned_cols=38 Identities=18% Similarity=0.331 Sum_probs=27.5
Q ss_pred CCCCCeEEEeecCCCCCHHHHHHHHHHH---hCCceEEeec
Q 019334 70 NVKVPLILGIWGGKGQGKSFQTELIFQA---MGIEPVIMSA 107 (342)
Q Consensus 70 ~~k~PlglgL~GPPG~GKTllaravA~~---~g~~~i~vs~ 107 (342)
|+.....++|.||||+|||++|..+|.. .|-+.+.++.
T Consensus 19 Gl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~ 59 (247)
T 2dr3_A 19 GIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVAL 59 (247)
T ss_dssp SEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 3444467999999999999998877653 3555555554
No 144
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.78 E-value=1.6e-05 Score=67.25 Aligned_cols=38 Identities=26% Similarity=0.392 Sum_probs=30.8
Q ss_pred CCeEEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccc
Q 019334 73 VPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELES 112 (342)
Q Consensus 73 ~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s 112 (342)
.+..++|.||||||||++++.+|+.+|++ .++.++++.
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~~l~~~--~i~~d~~~~ 40 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQELGFK--KLSTGDILR 40 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHHHTCE--EECHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCe--EecHHHHHH
Confidence 35678999999999999999999999965 455555554
No 145
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.77 E-value=1.3e-05 Score=70.91 Aligned_cols=39 Identities=26% Similarity=0.299 Sum_probs=30.8
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccc
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELES 112 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s 112 (342)
+.|..+.|.||||||||++|+.+|+++|.+++ +.++++.
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i--~~d~~~~ 43 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHFELKHL--SSGDLLR 43 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHSSSEEE--EHHHHHH
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHcCCeEE--echHHHH
Confidence 45678999999999999999999999996654 4455554
No 146
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.77 E-value=7.2e-05 Score=68.24 Aligned_cols=33 Identities=27% Similarity=0.260 Sum_probs=29.6
Q ss_pred eEEEeecCCCCCHHHHHHHHHHHhCCceEEeec
Q 019334 75 LILGIWGGKGQGKSFQTELIFQAMGIEPVIMSA 107 (342)
Q Consensus 75 lglgL~GPPG~GKTllaravA~~~g~~~i~vs~ 107 (342)
..++|.||||||||++|+++|++++..++.++.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~~~~i~~D~ 34 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETGWPVVALDR 34 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCCEEECCS
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCCCeEEeccH
Confidence 367899999999999999999999998887765
No 147
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.76 E-value=1.5e-05 Score=68.49 Aligned_cols=32 Identities=25% Similarity=0.287 Sum_probs=27.4
Q ss_pred CCeEEEeecCCCCCHHHHHHHHHHH-hCCceEE
Q 019334 73 VPLILGIWGGKGQGKSFQTELIFQA-MGIEPVI 104 (342)
Q Consensus 73 ~PlglgL~GPPG~GKTllaravA~~-~g~~~i~ 104 (342)
.+..++|.||||||||++++++|+. +|++++.
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id 41 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAELDGFQHLE 41 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCCEEee
Confidence 3467999999999999999999999 7866654
No 148
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.76 E-value=1.3e-05 Score=67.48 Aligned_cols=26 Identities=15% Similarity=0.291 Sum_probs=24.2
Q ss_pred CeEEEeecCCCCCHHHHHHHHHHHhC
Q 019334 74 PLILGIWGGKGQGKSFQTELIFQAMG 99 (342)
Q Consensus 74 PlglgL~GPPG~GKTllaravA~~~g 99 (342)
+..+.|.||||||||++|+.+|+.++
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46789999999999999999999988
No 149
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.76 E-value=1.4e-05 Score=67.24 Aligned_cols=31 Identities=23% Similarity=0.188 Sum_probs=24.1
Q ss_pred CCeEEEeecCCCCCHHHHHHHHHHHhCCceE
Q 019334 73 VPLILGIWGGKGQGKSFQTELIFQAMGIEPV 103 (342)
Q Consensus 73 ~PlglgL~GPPG~GKTllaravA~~~g~~~i 103 (342)
.|..++|.|+||||||++|+.+++.+|.+++
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 3678999999999999999999999999877
No 150
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.74 E-value=0.00011 Score=72.36 Aligned_cols=81 Identities=15% Similarity=0.121 Sum_probs=49.3
Q ss_pred CCCCeEEEeecCCCCCHHHHHHHHHHHh---------CCceEEeeccccccc--------ccCCc---------------
Q 019334 71 VKVPLILGIWGGKGQGKSFQTELIFQAM---------GIEPVIMSAGELESE--------RAGEP--------------- 118 (342)
Q Consensus 71 ~k~PlglgL~GPPG~GKTllaravA~~~---------g~~~i~vs~~eL~s~--------~~GEs--------------- 118 (342)
+..-..+.|.||||||||++++.+|... +-..+.++..+.++. .+|-.
T Consensus 175 I~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~~~ 254 (400)
T 3lda_A 175 VETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAYN 254 (400)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCS
T ss_pred cCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEeccCC
Confidence 3333579999999999999999766433 234666766543211 11211
Q ss_pred HHHHHHHHHHHHHhhhhcCCceEEEeecccccCC
Q 019334 119 GKLIRERYRTASQVVQNQGKMSCLMINDIDAGLG 152 (342)
Q Consensus 119 Er~iR~~F~~A~e~~~~~~~PcILfIDEIDAg~~ 152 (342)
.....+...++.+.+. ...|.+|+||++-+...
T Consensus 255 ~~~~~~~l~~~~~~l~-~~~~~llVIDs~t~~~~ 287 (400)
T 3lda_A 255 ADHQLRLLDAAAQMMS-ESRFSLIVVDSVMALYR 287 (400)
T ss_dssp HHHHHHHHHHHHHHHH-HSCEEEEEEETGGGGCC
T ss_pred hHHHHHHHHHHHHHHH-hcCCceEEecchhhhCc
Confidence 1112234444444443 46799999999988764
No 151
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=97.73 E-value=0.00014 Score=66.65 Aligned_cols=37 Identities=16% Similarity=0.097 Sum_probs=28.0
Q ss_pred CCCCCeEEEeecCCCCCHHHHHHHHHHHh----CCceEEee
Q 019334 70 NVKVPLILGIWGGKGQGKSFQTELIFQAM----GIEPVIMS 106 (342)
Q Consensus 70 ~~k~PlglgL~GPPG~GKTllaravA~~~----g~~~i~vs 106 (342)
++..--.++|.||||+|||++++.+|... |.+++.++
T Consensus 31 ~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~ 71 (296)
T 1cr0_A 31 GARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAM 71 (296)
T ss_dssp SBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 45555689999999999999999998654 53444443
No 152
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.73 E-value=2e-05 Score=68.15 Aligned_cols=38 Identities=29% Similarity=0.350 Sum_probs=31.1
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHhCCceEEeeccccc
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELE 111 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~ 111 (342)
+.|..++|.||||||||++|+.+++.+|+.++ ++.++.
T Consensus 16 ~~~~~I~l~G~~GsGKSTla~~L~~~lg~~~i--~~d~~~ 53 (202)
T 3t61_A 16 RFPGSIVVMGVSGSGKSSVGEAIAEACGYPFI--EGDALH 53 (202)
T ss_dssp CCSSCEEEECSTTSCHHHHHHHHHHHHTCCEE--EGGGGC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCEEE--eCCcCc
Confidence 34678999999999999999999999997655 455554
No 153
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.73 E-value=2.3e-05 Score=68.11 Aligned_cols=38 Identities=16% Similarity=0.210 Sum_probs=31.1
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHhCCceEEeeccccc
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELE 111 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~ 111 (342)
+.+..++|.||||||||++++++++.+|. +.+++.++.
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~g~--~~i~~d~~~ 64 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADETGL--EFAEADAFH 64 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHHCC--EEEEGGGGS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhhCC--eEEcccccc
Confidence 45678999999999999999999999985 556666654
No 154
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.71 E-value=8.1e-05 Score=64.61 Aligned_cols=39 Identities=21% Similarity=0.211 Sum_probs=32.4
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHh---CCceEEeecccc
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQAM---GIEPVIMSAGEL 110 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~~---g~~~i~vs~~eL 110 (342)
..+..+.|.||+|||||++++++|+.+ |...+.+++.++
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNV 64 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchh
Confidence 567889999999999999999999998 655456776655
No 155
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=97.70 E-value=3.4e-05 Score=69.64 Aligned_cols=42 Identities=31% Similarity=0.474 Sum_probs=36.3
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHhCCc--------eEEeeccccccc
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQAMGIE--------PVIMSAGELESE 113 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~~g~~--------~i~vs~~eL~s~ 113 (342)
+.|..|+|.||||||||++|+.+++.+|++ .+.++..+++..
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~~ 69 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRV 69 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBCC
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccccc
Confidence 567899999999999999999999999987 447888888864
No 156
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.70 E-value=6.6e-05 Score=63.62 Aligned_cols=39 Identities=15% Similarity=0.162 Sum_probs=33.2
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHh---CCceEEeecccc
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQAM---GIEPVIMSAGEL 110 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~~---g~~~i~vs~~eL 110 (342)
..+..++|.|++|||||+++++++..+ |.+++.+++..+
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~ 44 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 44 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHH
Confidence 345788999999999999999999998 999998886544
No 157
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=97.70 E-value=5.1e-05 Score=64.36 Aligned_cols=32 Identities=28% Similarity=0.401 Sum_probs=27.4
Q ss_pred EEEeecCCCCCHHHHHHHHHHHh---CCceEEeec
Q 019334 76 ILGIWGGKGQGKSFQTELIFQAM---GIEPVIMSA 107 (342)
Q Consensus 76 glgL~GPPG~GKTllaravA~~~---g~~~i~vs~ 107 (342)
.++|.||||||||++|+.+++.+ |.+++....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~~ 36 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKRE 36 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEES
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEeeC
Confidence 57899999999999999999999 998876543
No 158
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.70 E-value=2e-05 Score=65.69 Aligned_cols=42 Identities=19% Similarity=0.213 Sum_probs=32.4
Q ss_pred eEEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccccccCCc
Q 019334 75 LILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEP 118 (342)
Q Consensus 75 lglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~~~GEs 118 (342)
..++|.|+||||||++|+.+|+.+|++++ +..++.....|.+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~i--d~d~~~~~~~g~~ 44 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEFV--DTDIFMQHTSGMT 44 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEE--EHHHHHHHHHCSC
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEE--cccHHHHHHhCCC
Confidence 46889999999999999999999998765 4445554444443
No 159
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.67 E-value=6.9e-05 Score=65.36 Aligned_cols=53 Identities=23% Similarity=0.251 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCeEEEeecCCCCCHHHHHHHHHHHh---CCceEEeecccc
Q 019334 52 FMASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAM---GIEPVIMSAGEL 110 (342)
Q Consensus 52 f~d~l~~hi~K~~l~~~~~~k~PlglgL~GPPG~GKTllaravA~~~---g~~~i~vs~~eL 110 (342)
.++.++.++.+. ..+.+..++|.||+|||||+++++++..+ |.+++.++...+
T Consensus 6 ~~~~l~~~~~~~------~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~ 61 (201)
T 1rz3_A 6 RIDFLCKTILAI------KTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDH 61 (201)
T ss_dssp HHHHHHHHHHTS------CCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGG
T ss_pred HHHHHHHHHHHh------ccCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcc
Confidence 455555555433 24567899999999999999999999875 666666554433
No 160
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.66 E-value=8.3e-05 Score=63.48 Aligned_cols=28 Identities=25% Similarity=0.374 Sum_probs=25.7
Q ss_pred CeEEEeecCCCCCHHHHHHHHHHHhCCc
Q 019334 74 PLILGIWGGKGQGKSFQTELIFQAMGIE 101 (342)
Q Consensus 74 PlglgL~GPPG~GKTllaravA~~~g~~ 101 (342)
|..+.|.||||||||++|+.+++.++..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 5788999999999999999999999874
No 161
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.65 E-value=2.8e-05 Score=67.61 Aligned_cols=35 Identities=29% Similarity=0.396 Sum_probs=28.6
Q ss_pred EEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccc
Q 019334 76 ILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELES 112 (342)
Q Consensus 76 glgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s 112 (342)
.++|.||||||||++|+.+|+++|++.+ +.++++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i--~~d~~~r 36 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHI--STGDMFR 36 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEE--EHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEe--eHHHHHH
Confidence 4788999999999999999999997655 4555554
No 162
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.65 E-value=3.1e-05 Score=68.93 Aligned_cols=39 Identities=15% Similarity=0.220 Sum_probs=31.3
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccc
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELES 112 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s 112 (342)
..|..+.|.||||||||++|+++|+++|+.++ +.++++.
T Consensus 14 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i--~~d~li~ 52 (233)
T 1ak2_A 14 PKGVRAVLLGPPGAGKGTQAPKLAKNFCVCHL--ATGDMLR 52 (233)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHHTCEEE--EHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCcee--cHHHHHH
Confidence 34567899999999999999999999997654 4555553
No 163
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.65 E-value=1.7e-05 Score=69.71 Aligned_cols=39 Identities=36% Similarity=0.405 Sum_probs=31.7
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccc
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELES 112 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s 112 (342)
+.|..+.|.||||||||++++.+|+.+|.. .++.++++.
T Consensus 3 ~~~~~I~l~G~~GsGKsT~~~~La~~l~~~--~i~~d~~~~ 41 (222)
T 1zak_A 3 ADPLKVMISGAPASGKGTQCELIKTKYQLA--HISAGDLLR 41 (222)
T ss_dssp CCSCCEEEEESTTSSHHHHHHHHHHHHCCE--ECCHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCc--eecHHHHHH
Confidence 356788999999999999999999999964 456555554
No 164
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.65 E-value=3.4e-05 Score=67.22 Aligned_cols=37 Identities=19% Similarity=0.293 Sum_probs=31.4
Q ss_pred CeEEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccc
Q 019334 74 PLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELES 112 (342)
Q Consensus 74 PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s 112 (342)
+..++|.||||||||++++.+++.+|+++ ++.++++.
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~--~d~g~i~~ 41 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHL--LDSGAIYR 41 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEE--EEHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCc--ccCcceee
Confidence 56799999999999999999999999655 56677664
No 165
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=97.64 E-value=0.00016 Score=69.88 Aligned_cols=39 Identities=15% Similarity=0.183 Sum_probs=33.7
Q ss_pred CCeEEEeecCCCCCHHHHHHHHHHHhCCceEEeeccccc
Q 019334 73 VPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELE 111 (342)
Q Consensus 73 ~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~ 111 (342)
.|..++|.||+|||||++++++|++++..+|.++.-.++
T Consensus 4 m~~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~qvy 42 (323)
T 3crm_A 4 LPPAIFLMGPTAAGKTDLAMALADALPCELISVDSALIY 42 (323)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTTTTB
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCcEEeccchhhh
Confidence 467899999999999999999999999988888664433
No 166
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.64 E-value=0.00011 Score=69.34 Aligned_cols=81 Identities=9% Similarity=0.132 Sum_probs=52.3
Q ss_pred CCCCCeEEEeecCCCCCHHHHHHHHHHHh---------CCceEEeeccccccc--------ccCC---------------
Q 019334 70 NVKVPLILGIWGGKGQGKSFQTELIFQAM---------GIEPVIMSAGELESE--------RAGE--------------- 117 (342)
Q Consensus 70 ~~k~PlglgL~GPPG~GKTllaravA~~~---------g~~~i~vs~~eL~s~--------~~GE--------------- 117 (342)
|+.....+.|+||||||||++|..+|... +-..+.++..+-++. ..|-
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~ 182 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAI 182 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeCC
Confidence 34444679999999999999999999875 556677776543210 0111
Q ss_pred -cHHHHHHHHHHHHHhhhhcCCceEEEeecccccC
Q 019334 118 -PGKLIRERYRTASQVVQNQGKMSCLMINDIDAGL 151 (342)
Q Consensus 118 -sEr~iR~~F~~A~e~~~~~~~PcILfIDEIDAg~ 151 (342)
++. +.+++..+.+.++....|.+|+||.+.+..
T Consensus 183 ~~~~-~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~ 216 (324)
T 2z43_A 183 NTDH-QIAIVDDLQELVSKDPSIKLIVVDSVTSHF 216 (324)
T ss_dssp SHHH-HHHHHHHHHHHHHHCTTEEEEEETTTTHHH
T ss_pred CHHH-HHHHHHHHHHHHHhccCCCEEEEeCcHHHh
Confidence 121 223444444444412679999999999975
No 167
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.64 E-value=2.8e-05 Score=67.69 Aligned_cols=35 Identities=34% Similarity=0.441 Sum_probs=28.5
Q ss_pred EEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccc
Q 019334 76 ILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELES 112 (342)
Q Consensus 76 glgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s 112 (342)
.++|.||||+|||++|+.+|+++|++. ++.++++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~--i~~d~~~r 36 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPH--ISTGDMFR 36 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCE--EEHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcE--EeHHHHHH
Confidence 478899999999999999999998655 45555554
No 168
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=97.63 E-value=8e-06 Score=83.36 Aligned_cols=120 Identities=13% Similarity=0.048 Sum_probs=67.3
Q ss_pred EEEeecCCCCCHHHHHHHH-HHHhCCceEEeec-----cccc----cc--ccCCcHHHHHHHHHHHHHhhhhcCCceEEE
Q 019334 76 ILGIWGGKGQGKSFQTELI-FQAMGIEPVIMSA-----GELE----SE--RAGEPGKLIRERYRTASQVVQNQGKMSCLM 143 (342)
Q Consensus 76 glgL~GPPG~GKTllarav-A~~~g~~~i~vs~-----~eL~----s~--~~GEsEr~iR~~F~~A~e~~~~~~~PcILf 143 (342)
-|||.|+||| ||++++++ ++-+.- .+..++ ..|. ++ |.-++.. +..| .--|+|
T Consensus 241 hVLL~G~PGt-KS~Lar~i~~~i~pR-~~ft~g~~ss~~gLt~s~r~~tG~~~~~G~-----l~LA--------dgGvl~ 305 (506)
T 3f8t_A 241 HVLLAGYPVV-CSEILHHVLDHLAPR-GVYVDLRRTELTDLTAVLKEDRGWALRAGA-----AVLA--------DGGILA 305 (506)
T ss_dssp CEEEESCHHH-HHHHHHHHHHHTCSS-EEEEEGGGCCHHHHSEEEEESSSEEEEECH-----HHHT--------TTSEEE
T ss_pred eEEEECCCCh-HHHHHHHHHHHhCCC-eEEecCCCCCccCceEEEEcCCCcccCCCe-----eEEc--------CCCeee
Confidence 5999999999 99999999 554322 121111 0111 11 1111221 1122 125899
Q ss_pred eecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCCC-----------CCccCCC
Q 019334 144 INDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDFS-----------TIYAPLI 212 (342)
Q Consensus 144 IDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~~-----------~LdpaLl 212 (342)
||||+..-+ .+...|++-|.. ..|++.|. ....+..||||+|..+ .|+++|+
T Consensus 306 lDEIn~~~~------------~~qsaLlEaMEe-~~VtI~G~----~lparf~VIAA~NP~~~yd~~~s~~~~~Lp~alL 368 (506)
T 3f8t_A 306 VDHLEGAPE------------PHRWALMEAMDK-GTVTVDGI----ALNARCAVLAAINPGEQWPSDPPIARIDLDQDFL 368 (506)
T ss_dssp EECCTTCCH------------HHHHHHHHHHHH-SEEEETTE----EEECCCEEEEEECCCC--CCSCGGGGCCSCHHHH
T ss_pred hHhhhhCCH------------HHHHHHHHHHhC-CcEEECCE----EcCCCeEEEEEeCcccccCCCCCccccCCChHHh
Confidence 999998632 133445555442 23445553 2246788999999876 6777888
Q ss_pred CCCCCcceecC---CCHHHH
Q 019334 213 RDGRMEKFYWQ---PNLEDI 229 (342)
Q Consensus 213 RpGRfD~~i~v---P~~~~R 229 (342)
= |||-++.+ |+.++-
T Consensus 369 D--RFDLi~i~~d~pd~e~d 386 (506)
T 3f8t_A 369 S--HFDLIAFLGVDPRPGEP 386 (506)
T ss_dssp T--TCSEEEETTC-------
T ss_pred h--heeeEEEecCCCChhHh
Confidence 7 99986654 666543
No 169
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.63 E-value=8.8e-05 Score=71.95 Aligned_cols=80 Identities=18% Similarity=0.272 Sum_probs=52.6
Q ss_pred CCCCCeEEEeecCCCCCHHHHHHHHHHH---hCCceEEeeccccccc----ccCC-----------cHHHHHHHHHHHHH
Q 019334 70 NVKVPLILGIWGGKGQGKSFQTELIFQA---MGIEPVIMSAGELESE----RAGE-----------PGKLIRERYRTASQ 131 (342)
Q Consensus 70 ~~k~PlglgL~GPPG~GKTllaravA~~---~g~~~i~vs~~eL~s~----~~GE-----------sEr~iR~~F~~A~e 131 (342)
|+....+++|+||||||||++|..+|.. .|-+.+.++..+-++. ..|- +...+++..+ .
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~---~ 135 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICD---A 135 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHH---H
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHH---H
Confidence 3555578999999999999999988865 3667777777433321 1121 2223333332 2
Q ss_pred hhhhcCCceEEEeecccccCCC
Q 019334 132 VVQNQGKMSCLMINDIDAGLGR 153 (342)
Q Consensus 132 ~~~~~~~PcILfIDEIDAg~~r 153 (342)
+++ .+.+.+|+||.+-+..++
T Consensus 136 l~~-~~~~~lVVIDsl~~l~~~ 156 (356)
T 1u94_A 136 LAR-SGAVDVIVVDSVAALTPK 156 (356)
T ss_dssp HHH-HTCCSEEEEECGGGCCCH
T ss_pred HHh-ccCCCEEEEcCHHHhcch
Confidence 222 467999999999998753
No 170
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.62 E-value=4.1e-05 Score=68.59 Aligned_cols=37 Identities=30% Similarity=0.372 Sum_probs=30.9
Q ss_pred CCeEEEeecCCCCCHHHHHHHHHHHhCCceEEeeccccc
Q 019334 73 VPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELE 111 (342)
Q Consensus 73 ~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~ 111 (342)
.|..++|.||||||||++++++|+++|+.. ++.++++
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~--~~~G~i~ 62 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQH--LSSGHFL 62 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCC--EEHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeE--ecHHHHH
Confidence 478899999999999999999999999754 4555554
No 171
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.62 E-value=1.8e-05 Score=67.49 Aligned_cols=39 Identities=33% Similarity=0.485 Sum_probs=31.3
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHhCCceEEeeccccccc
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESE 113 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~ 113 (342)
+.|..++|.||+|||||++++.+|+. |++++ +..++...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~-g~~~i--d~d~~~~~ 44 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW-GYPVL--DLDALAAR 44 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT-TCCEE--EHHHHHHH
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC-CCEEE--cccHHHHH
Confidence 45789999999999999999999998 76654 55555543
No 172
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.60 E-value=3e-05 Score=68.31 Aligned_cols=37 Identities=30% Similarity=0.436 Sum_probs=29.9
Q ss_pred CeEEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccc
Q 019334 74 PLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELES 112 (342)
Q Consensus 74 PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s 112 (342)
+..+.|.||||||||++|+.+|+.+|++++ +.++++.
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i--~~d~li~ 41 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEYGLAHL--STGDMLR 41 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHCCEEE--EHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCceEE--ehhHHHH
Confidence 356888999999999999999999997655 4455554
No 173
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.59 E-value=5e-05 Score=64.94 Aligned_cols=34 Identities=15% Similarity=0.095 Sum_probs=29.8
Q ss_pred CCeEEEeecCCCCCHHHHHHHHHHHh-CCceEEee
Q 019334 73 VPLILGIWGGKGQGKSFQTELIFQAM-GIEPVIMS 106 (342)
Q Consensus 73 ~PlglgL~GPPG~GKTllaravA~~~-g~~~i~vs 106 (342)
.|..+.|.||||||||++++.+++.+ |.+++.++
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~ 37 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESIPANTIKYLN 37 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEe
Confidence 46788999999999999999999998 68777765
No 174
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=97.57 E-value=6.3e-05 Score=63.34 Aligned_cols=31 Identities=19% Similarity=0.383 Sum_probs=28.1
Q ss_pred EEEeecCCCCCHHHHHHHHHHHh---CCceEEee
Q 019334 76 ILGIWGGKGQGKSFQTELIFQAM---GIEPVIMS 106 (342)
Q Consensus 76 glgL~GPPG~GKTllaravA~~~---g~~~i~vs 106 (342)
.++|.|+||||||++|+.+++.+ |++++..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 58899999999999999999998 98888765
No 175
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.57 E-value=0.00019 Score=62.71 Aligned_cols=41 Identities=12% Similarity=0.100 Sum_probs=33.0
Q ss_pred CCCCeEEEeecCCCCCHHHHHHHHHHHhC----CceEEeeccccc
Q 019334 71 VKVPLILGIWGGKGQGKSFQTELIFQAMG----IEPVIMSAGELE 111 (342)
Q Consensus 71 ~k~PlglgL~GPPG~GKTllaravA~~~g----~~~i~vs~~eL~ 111 (342)
...+..+.|.|+||||||++++.+++.++ .+++.+++..+.
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~r 66 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIR 66 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHHh
Confidence 45678899999999999999999998664 667778765443
No 176
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.57 E-value=0.00021 Score=68.20 Aligned_cols=80 Identities=15% Similarity=0.156 Sum_probs=51.1
Q ss_pred CCCCCeEEEeecCCCCCHHHHHHHHHHHh---------CCceEEeeccccccc--------ccC----------------
Q 019334 70 NVKVPLILGIWGGKGQGKSFQTELIFQAM---------GIEPVIMSAGELESE--------RAG---------------- 116 (342)
Q Consensus 70 ~~k~PlglgL~GPPG~GKTllaravA~~~---------g~~~i~vs~~eL~s~--------~~G---------------- 116 (342)
|+..-.++.|+||||||||++|..+|... +-..+.++..+-++. ..|
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~~ 197 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAY 197 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEeecC
Confidence 34444679999999999999999999873 456666766543210 011
Q ss_pred CcHHHHHHHHHHHHHhhhhc--CCceEEEeecccccC
Q 019334 117 EPGKLIRERYRTASQVVQNQ--GKMSCLMINDIDAGL 151 (342)
Q Consensus 117 EsEr~iR~~F~~A~e~~~~~--~~PcILfIDEIDAg~ 151 (342)
..+.. .++...+.+.++ . ..+.+|+||.+.+..
T Consensus 198 ~~e~~-~~ll~~l~~~i~-~~~~~~~lvVIDsl~~l~ 232 (343)
T 1v5w_A 198 TSEHQ-MELLDYVAAKFH-EEAGIFKLLIIDSIMALF 232 (343)
T ss_dssp STTHH-HHHHHHHHHHHH-HSCSSEEEEEEETSGGGH
T ss_pred CHHHH-HHHHHHHHHHHH-hcCCCccEEEEechHHHH
Confidence 11211 123333434443 3 679999999999976
No 177
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.56 E-value=6.8e-05 Score=63.00 Aligned_cols=36 Identities=19% Similarity=0.221 Sum_probs=29.7
Q ss_pred CeEEEeecCCCCCHHHHHHHHHHHhCCceEEeeccccc
Q 019334 74 PLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELE 111 (342)
Q Consensus 74 PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~ 111 (342)
+..++|.||||||||++++++++.+|.. .+++.++.
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~g~~--~i~~d~~~ 43 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQLHAA--FLDGDFLH 43 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHTCE--EEEGGGGC
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhhCcE--EEeCcccc
Confidence 4689999999999999999999999854 45555554
No 178
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.56 E-value=3.7e-05 Score=64.58 Aligned_cols=37 Identities=24% Similarity=0.223 Sum_probs=28.8
Q ss_pred eEEEeecCCCCCHHHHHHHHHHHhC---CceEEeeccccc
Q 019334 75 LILGIWGGKGQGKSFQTELIFQAMG---IEPVIMSAGELE 111 (342)
Q Consensus 75 lglgL~GPPG~GKTllaravA~~~g---~~~i~vs~~eL~ 111 (342)
..+.|.||||||||++|++++++++ .++..++.++++
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~ 41 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFM 41 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECChHH
Confidence 3578999999999999999999887 235555655554
No 179
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.55 E-value=0.00014 Score=67.83 Aligned_cols=28 Identities=14% Similarity=0.073 Sum_probs=23.5
Q ss_pred CCCCCeEEEeecCCCCCHHHHHHHHHHH
Q 019334 70 NVKVPLILGIWGGKGQGKSFQTELIFQA 97 (342)
Q Consensus 70 ~~k~PlglgL~GPPG~GKTllaravA~~ 97 (342)
|+.....++|+||||+|||++|..+|..
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3444468999999999999999999875
No 180
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.55 E-value=0.00028 Score=60.12 Aligned_cols=40 Identities=10% Similarity=0.125 Sum_probs=31.0
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHhC---CceEEeeccccc
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQAMG---IEPVIMSAGELE 111 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~~g---~~~i~vs~~eL~ 111 (342)
..+..+.|.|+||||||++++++|..++ .+++.+++..+.
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~~ 53 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWAR 53 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHHH
Confidence 4567889999999999999999998874 345556654443
No 181
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.54 E-value=7.5e-05 Score=64.28 Aligned_cols=49 Identities=20% Similarity=0.211 Sum_probs=33.4
Q ss_pred eEEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccccccCCcHHHHHHHH
Q 019334 75 LILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERY 126 (342)
Q Consensus 75 lglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~~~GEsEr~iR~~F 126 (342)
..++|.||+|||||++++.+|+ +|++++ +..++...........+.+++
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~-~g~~~i--~~d~~~~~~~~~~~~~~~~i~ 50 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE-LGAYVL--DADKLIHSFYRKGHPVYEEVV 50 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH-TTCEEE--EHHHHHHGGGSSSSHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH-CCCEEE--EccHHHHHHhcCCHHHHHHHH
Confidence 3689999999999999999999 886554 455555443332233334444
No 182
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.53 E-value=3.8e-05 Score=66.04 Aligned_cols=30 Identities=20% Similarity=0.231 Sum_probs=26.0
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHhCCc
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQAMGIE 101 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~~g~~ 101 (342)
+.|..++|.||||||||++++.+++.++..
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~~~ 36 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEALCAA 36 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 457889999999999999999999986543
No 183
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=97.53 E-value=0.00021 Score=71.76 Aligned_cols=105 Identities=20% Similarity=0.182 Sum_probs=71.6
Q ss_pred CcHHHHHHHHHHHHHhhhhcCCceEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCcc
Q 019334 117 EPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIP 196 (342)
Q Consensus 117 EsEr~iR~~F~~A~e~~~~~~~PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~ 196 (342)
..+...+++.++|.. -.||||||||+++.+.++.++++...-|+..||.++|+- .+.. -|...+ +.+|.
T Consensus 236 ~~~~~~~~ai~~ae~-------~~il~~DEidki~~~~~~~~~D~s~egvq~aLL~~le~~-~~~~--~~~~~d-~~~il 304 (444)
T 1g41_A 236 NPEELKQKAIDAVEQ-------NGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGS-TVST--KHGMVK-TDHIL 304 (444)
T ss_dssp CHHHHHHHHHHHHHH-------HCEEEEETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCC-EEEE--TTEEEE-CTTCE
T ss_pred CHHHHHHHHHHHhcc-------CCeeeHHHHHHHhhccCCCCCCchHHHHHHHHHHHhccc-cccc--ccceec-CCcEE
Confidence 345666666666532 358999999999865444445665556888999999953 2221 123334 67899
Q ss_pred EEEee----CCCCCCccCCCCCCCCcceecC--CCHHHHHHHHH
Q 019334 197 IIFTG----NDFSTIYAPLIRDGRMEKFYWQ--PNLEDILNIVH 234 (342)
Q Consensus 197 VIatT----Nr~~~LdpaLlRpGRfD~~i~v--P~~~~R~~Il~ 234 (342)
+|+|+ +.|+.+-|+|+- ||+..+.. .+.++...|+.
T Consensus 305 fI~~gaf~~~~~~dlipel~~--R~~i~i~l~~lt~~e~~~Il~ 346 (444)
T 1g41_A 305 FIASGAFQVARPSDLIPELQG--RLPIRVELTALSAADFERILT 346 (444)
T ss_dssp EEEEECCSSCCGGGSCHHHHT--TCCEEEECCCCCHHHHHHHHH
T ss_pred EEeccccccCChhhcchHHhc--ccceeeeCCCCCHHHHHHHHH
Confidence 99998 344545577764 99997766 48899999984
No 184
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.51 E-value=0.00013 Score=64.12 Aligned_cols=28 Identities=25% Similarity=0.363 Sum_probs=25.1
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHhC
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQAMG 99 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~~g 99 (342)
+.+..++|.||+|+|||++++++++.+.
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4567899999999999999999999885
No 185
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=97.50 E-value=0.00038 Score=60.70 Aligned_cols=37 Identities=19% Similarity=0.222 Sum_probs=26.4
Q ss_pred CCCCeEEEeecCCCCCHHHHHHHHHH----HhCCceEEeec
Q 019334 71 VKVPLILGIWGGKGQGKSFQTELIFQ----AMGIEPVIMSA 107 (342)
Q Consensus 71 ~k~PlglgL~GPPG~GKTllaravA~----~~g~~~i~vs~ 107 (342)
+.+--.++|+|+||+|||.+|-.+|. ..+-+.+.++.
T Consensus 27 l~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~ 67 (251)
T 2zts_A 27 FPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecc
Confidence 44446799999999999999876543 34556665554
No 186
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.50 E-value=5.1e-05 Score=65.79 Aligned_cols=41 Identities=17% Similarity=0.216 Sum_probs=32.0
Q ss_pred cCCCCCeEEEeecCCCCCHHHHHHHHHHHh-CCceEEeeccccc
Q 019334 69 LNVKVPLILGIWGGKGQGKSFQTELIFQAM-GIEPVIMSAGELE 111 (342)
Q Consensus 69 ~~~k~PlglgL~GPPG~GKTllaravA~~~-g~~~i~vs~~eL~ 111 (342)
+.++.+..++|.||||||||++++.+++.+ ++.+ ++..+++
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~--i~~D~~~ 57 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKNLQKHLPNCSV--ISQDDFF 57 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHHHHTTSTTEEE--EEGGGGB
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHhcCCcEE--EeCCccc
Confidence 345667899999999999999999999988 6544 4444554
No 187
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.49 E-value=0.00035 Score=68.90 Aligned_cols=38 Identities=16% Similarity=0.029 Sum_probs=28.1
Q ss_pred CCCCCeEEEeecCCCCCHHHHHHHHHHH----hCCceEEeec
Q 019334 70 NVKVPLILGIWGGKGQGKSFQTELIFQA----MGIEPVIMSA 107 (342)
Q Consensus 70 ~~k~PlglgL~GPPG~GKTllaravA~~----~g~~~i~vs~ 107 (342)
|+.+--.++|.||||+|||++|..+|.. .|.+++.++.
T Consensus 199 Gl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~ 240 (454)
T 2r6a_A 199 GFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL 240 (454)
T ss_dssp SBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 3444457899999999999999988764 3556666553
No 188
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.49 E-value=0.00026 Score=69.00 Aligned_cols=77 Identities=10% Similarity=0.063 Sum_probs=48.4
Q ss_pred EEEeecCCCCCHHHHHHHHHHHh-----CCceEEeeccccccc----ccCCc--------HHHHHHH-HHHHHHh--hhh
Q 019334 76 ILGIWGGKGQGKSFQTELIFQAM-----GIEPVIMSAGELESE----RAGEP--------GKLIRER-YRTASQV--VQN 135 (342)
Q Consensus 76 glgL~GPPG~GKTllaravA~~~-----g~~~i~vs~~eL~s~----~~GEs--------Er~iR~~-F~~A~e~--~~~ 135 (342)
.++|+||||||||++|-.++.++ |-..+-+++.+=++. ..|-. +...-++ +..+..+ ++
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l~~i~- 108 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQLDAIE- 108 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHHHHTCC-
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHHHHHhh-
Confidence 57899999999999987666543 667777887554331 12211 0112222 3222222 33
Q ss_pred cCCceEEEeecccccCCC
Q 019334 136 QGKMSCLMINDIDAGLGR 153 (342)
Q Consensus 136 ~~~PcILfIDEIDAg~~r 153 (342)
.++|.+|+||=|-+..++
T Consensus 109 ~~~~~lvVIDSI~aL~~~ 126 (333)
T 3io5_A 109 RGEKVVVFIDSLGNLASK 126 (333)
T ss_dssp TTCCEEEEEECSTTCBCC
T ss_pred ccCceEEEEecccccccc
Confidence 578999999999998754
No 189
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=97.49 E-value=9.7e-05 Score=72.38 Aligned_cols=37 Identities=24% Similarity=0.223 Sum_probs=30.6
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHhCCceEEeecccc
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGEL 110 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL 110 (342)
..|..|+|.||||||||++|+.+++++|+ ..++..++
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~~~--~~i~~D~~ 292 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSAGY--VHVNRDTL 292 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGGTC--EECCGGGS
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhcCc--EEEccchH
Confidence 45678999999999999999999999985 45565555
No 190
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.48 E-value=5.7e-05 Score=66.12 Aligned_cols=35 Identities=23% Similarity=0.416 Sum_probs=28.2
Q ss_pred EEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccc
Q 019334 76 ILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELES 112 (342)
Q Consensus 76 glgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s 112 (342)
.++|.||||||||++|+.+|+.+|++++. .++++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~--~d~~~r 36 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQIS--TGDMLR 36 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEE--HHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEe--HHHHHH
Confidence 37889999999999999999999976654 444443
No 191
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=97.48 E-value=8.6e-05 Score=63.49 Aligned_cols=34 Identities=29% Similarity=0.334 Sum_probs=29.1
Q ss_pred EEEeecCCCCCHHHHHHHHHHHhCCceEEeeccccc
Q 019334 76 ILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELE 111 (342)
Q Consensus 76 glgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~ 111 (342)
.++|.||+|||||++++.+|+.+|++++. .+++.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d--~d~~~ 37 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLS--SGLLY 37 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEE--HHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceec--cchHH
Confidence 79999999999999999999999977664 44554
No 192
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.46 E-value=0.00029 Score=84.64 Aligned_cols=172 Identities=18% Similarity=0.202 Sum_probs=105.8
Q ss_pred eEEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccccccCCcHHHHHHHHHHHHHhhhhcCCceEEEeecccccCCCC
Q 019334 75 LILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRF 154 (342)
Q Consensus 75 lglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~~~GEsEr~iR~~F~~A~e~~~~~~~PcILfIDEIDAg~~r~ 154 (342)
+|..+.||+|||||.+++.+|+.+|.++++++.++=++ .+.+-..|.-+.+. | +...||||+.+-..
T Consensus 605 ~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d------~~~~g~i~~G~~~~----G--aW~cfDEfNrl~~~- 671 (3245)
T 3vkg_A 605 MGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFD------LQAMSRIFVGLCQC----G--AWGCFDEFNRLEER- 671 (3245)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCC------HHHHHHHHHHHHHH----T--CEEEEETTTSSCHH-
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCC------HHHHHHHHhhHhhc----C--cEEEehhhhcCCHH-
Confidence 56679999999999999999999999999999987665 45667778776542 3 45567999986321
Q ss_pred CCCcccchhHHHHHHHHhhcCCCCccccC-ccccccCCCCCccEEEeeC----CCCCCccCCCCCCCCcceec--CCCHH
Q 019334 155 GNTQMTVNNQIVVGTLMNLSDNPTRVSIG-QDWRESDITNRIPIIFTGN----DFSTIYAPLIRDGRMEKFYW--QPNLE 227 (342)
Q Consensus 155 ~~t~~~v~~q~V~~tLl~llD~p~~v~l~-g~~~~~~~~~~V~VIatTN----r~~~LdpaLlRpGRfD~~i~--vP~~~ 227 (342)
.-+ +-.+.+......+.++...+.+. |. .-+..+..-|++|-| .-..||.+|.. ||=- +. +||.+
T Consensus 672 --vLS-vv~~qi~~I~~a~~~~~~~~~~~~G~--~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~--lFr~-v~m~~Pd~~ 743 (3245)
T 3vkg_A 672 --ILS-AVSQQIQTIQVALKENSKEVELLGGK--NISLHQDMGIFVTMNPGYAGRSNLPDNLKK--LFRS-MAMIKPDRE 743 (3245)
T ss_dssp --HHH-HHHHHHHHHHHHHHHTCSEECCC-----CEECCTTCEEEECBCCCGGGCCCSCHHHHT--TEEE-EECCSCCHH
T ss_pred --HHH-HHHHHHHHHHHHHHcCCCeEEecCCC--EEeecCCeEEEEEeCCCccCcccChHHHHh--hcEE-EEEeCCCHH
Confidence 111 01111221122233444555555 42 112245677888888 34678888887 6633 33 49887
Q ss_pred HHHHHHHHHhhcCCCCH-HHHHH-Hh-------hcCCCCc-cch-HHHHHHHHH
Q 019334 228 DILNIVHRMYEKDGITK-DEVGS-IV-------KTFPNQA-LDF-YGALRSRTY 270 (342)
Q Consensus 228 ~R~~Il~~~~~~~~~s~-~di~~-lv-------d~f~~~~-~df-~gAlrs~~~ 270 (342)
...+| ++-+.|+.. ..+.+ ++ ...+.|+ -|| +.|+.|++.
T Consensus 744 ~i~ei---~L~s~Gf~~a~~La~k~~~~~~l~~e~LS~Q~HYDfGLRalKsVL~ 794 (3245)
T 3vkg_A 744 MIAQV---MLYSQGFKTAEVLAGKIVPLFKLCQEQLSAQSHYDFGLRALKSVLV 794 (3245)
T ss_dssp HHHHH---HHHTTTCSCHHHHHHHHHHHHHHHHHSSCCCTTCCCSHHHHHHHHH
T ss_pred HHHHH---HHHHcccchHHHHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHH
Confidence 66665 455666643 33322 22 2445555 577 457776653
No 193
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.45 E-value=3.9e-05 Score=66.00 Aligned_cols=32 Identities=25% Similarity=0.219 Sum_probs=27.6
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHhCCceE
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQAMGIEPV 103 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~~g~~~i 103 (342)
+.|..++|.|+||||||++|+.+++.++...+
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~ 39 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYLKNNNV 39 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHHHHTTC
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHHHHcCC
Confidence 45788999999999999999999998876544
No 194
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.45 E-value=7e-05 Score=73.53 Aligned_cols=71 Identities=13% Similarity=0.076 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHhhcCCCCCeEEEeecCCCCCHHHHHHHHHHHhCCceEE------------------eeccccccccc
Q 019334 54 ASLLCHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVI------------------MSAGELESERA 115 (342)
Q Consensus 54 d~l~~hi~K~~l~~~~~~k~PlglgL~GPPG~GKTllaravA~~~g~~~i~------------------vs~~eL~s~~~ 115 (342)
+.++..+++.+-..+.. .....++|.||||||||++++++|+.++.+|+. ++..+.+....
T Consensus 5 ~~L~~~il~~l~~~i~~-g~~~~i~l~G~~G~GKTTl~~~la~~l~~~f~~l~a~~~g~~~ir~~~~~a~d~D~~I~~~~ 83 (359)
T 2ga8_A 5 HKLADDVLQLLDNRIED-NYRVCVILVGSPGSGKSTIAEELCQIINEKYHTFLSEHPNVIEVNDRLKPMVNLVDSLKTLQ 83 (359)
T ss_dssp HHHHHHHHHHHHHTTTT-CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHHHHHHHSTTCCCEECTTSCCCCSSTTSEECC
T ss_pred HHHHHHHHHHHHHHhcc-CCeeEEEEECCCCCcHHHHHHHHHHHhCCCeeeecccccchHHHHHHHHhhhhhhhHHHHHh
Confidence 45666666665442222 223467889999999999999999999999865 44445555555
Q ss_pred CCcHHHHHHHHHH
Q 019334 116 GEPGKLIRERYRT 128 (342)
Q Consensus 116 GEsEr~iR~~F~~ 128 (342)
| +.|.++|++
T Consensus 84 g---~~i~~if~~ 93 (359)
T 2ga8_A 84 P---NKVAEMIEN 93 (359)
T ss_dssp H---HHHHHHHHT
T ss_pred C---ccHHHHHHH
Confidence 4 456666653
No 195
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.44 E-value=9.3e-05 Score=62.80 Aligned_cols=29 Identities=31% Similarity=0.410 Sum_probs=26.1
Q ss_pred EEEeecCCCCCHHHHHHHHHHHhCCceEE
Q 019334 76 ILGIWGGKGQGKSFQTELIFQAMGIEPVI 104 (342)
Q Consensus 76 glgL~GPPG~GKTllaravA~~~g~~~i~ 104 (342)
.+.|.||||||||++++.+|+.++..++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~~ 30 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIFK 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEEC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEEc
Confidence 47889999999999999999999987664
No 196
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.43 E-value=0.00018 Score=65.79 Aligned_cols=73 Identities=14% Similarity=0.115 Sum_probs=46.1
Q ss_pred eEEEeecCCCCCHHHHHHHHHHHh---CCceEEeecc-------cccccccCCcH-----HHHHHHHHHHHHhhhhcCCc
Q 019334 75 LILGIWGGKGQGKSFQTELIFQAM---GIEPVIMSAG-------ELESERAGEPG-----KLIRERYRTASQVVQNQGKM 139 (342)
Q Consensus 75 lglgL~GPPG~GKTllaravA~~~---g~~~i~vs~~-------eL~s~~~GEsE-----r~iR~~F~~A~e~~~~~~~P 139 (342)
.+++++||||+|||+++..++..+ |...+.++.. .+.+ ..|-+- ....++++.+.+... .+.|
T Consensus 13 ~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~s-rlG~~~~~~~~~~~~~i~~~i~~~~~-~~~~ 90 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQS-RTGTSLPSVEVESAPEILNYIMSNSF-NDET 90 (223)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCC-CCCCSSCCEEESSTHHHHHHHHSTTS-CTTC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHH-hcCCCccccccCCHHHHHHHHHHHhh-CCCC
Confidence 678889999999999998777655 5566666432 2322 234210 112345555544332 3568
Q ss_pred eEEEeecccc
Q 019334 140 SCLMINDIDA 149 (342)
Q Consensus 140 cILfIDEIDA 149 (342)
.+|+|||+--
T Consensus 91 dvViIDEaQ~ 100 (223)
T 2b8t_A 91 KVIGIDEVQF 100 (223)
T ss_dssp CEEEECSGGG
T ss_pred CEEEEecCcc
Confidence 9999999965
No 197
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=97.43 E-value=0.00087 Score=62.66 Aligned_cols=147 Identities=10% Similarity=0.082 Sum_probs=86.7
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHh---CC-ceEEeecccccccccCCcHHHHHHHHHHHHHhhhhcCCceEEEeecc
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQAM---GI-EPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDI 147 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~~---g~-~~i~vs~~eL~s~~~GEsEr~iR~~F~~A~e~~~~~~~PcILfIDEI 147 (342)
+.+...++|||+|.||+..++++++.+ +. ++..+. +-| +..+|++.+.+... +--+..-|++|||.
T Consensus 16 ~~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~-------~~~--~~~~~~l~~~~~~~-plf~~~kvvii~~~ 85 (343)
T 1jr3_D 16 GLRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFS-------IDP--NTDWNAIFSLCQAM-SLFASRQTLLLLLP 85 (343)
T ss_dssp CCCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEE-------CCT--TCCHHHHHHHHHHH-HHCCSCEEEEEECC
T ss_pred CCCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEE-------ecC--CCCHHHHHHHhcCc-CCccCCeEEEEECC
Confidence 577899999999999999999998865 32 211221 112 23467777666432 22466789999999
Q ss_pred cccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCCC------CCCccCCCCCCCCccee
Q 019334 148 DAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGNDF------STIYAPLIRDGRMEKFY 221 (342)
Q Consensus 148 DAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr~------~~LdpaLlRpGRfD~~i 221 (342)
|...++ . ....|+..+.+| .+.+.+|.+|+.+ ..+.+++.-.|.. -.+
T Consensus 86 ~~kl~~----~-------~~~aLl~~le~p--------------~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~-~~~ 139 (343)
T 1jr3_D 86 ENGPNA----A-------INEQLLTLTGLL--------------HDDLLLIVRGNKLSKAQENAAWFTALANRSVQ-VTC 139 (343)
T ss_dssp SSCCCT----T-------HHHHHHHHHTTC--------------BTTEEEEEEESCCCTTTTTSHHHHHHTTTCEE-EEE
T ss_pred CCCCCh----H-------HHHHHHHHHhcC--------------CCCeEEEEEcCCCChhhHhhHHHHHHHhCceE-EEe
Confidence 873221 1 122355554532 2345555555543 3467776654421 123
Q ss_pred cCCCHHHHHHHHHHHhhcCC--CCHHHHHHHhhcC
Q 019334 222 WQPNLEDILNIVHRMYEKDG--ITKDEVGSIVKTF 254 (342)
Q Consensus 222 ~vP~~~~R~~Il~~~~~~~~--~s~~di~~lvd~f 254 (342)
+.|+.++....++..++..+ ++.+.++.++...
T Consensus 140 ~~l~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~ 174 (343)
T 1jr3_D 140 QTPEQAQLPRWVAARAKQLNLELDDAANQVLCYCY 174 (343)
T ss_dssp CCCCTTHHHHHHHHHHHHTTCEECHHHHHHHHHSS
T ss_pred eCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Confidence 34677788877777766665 4555555555433
No 198
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=97.42 E-value=0.00011 Score=64.07 Aligned_cols=37 Identities=27% Similarity=0.461 Sum_probs=29.7
Q ss_pred CCeEEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccc
Q 019334 73 VPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELES 112 (342)
Q Consensus 73 ~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s 112 (342)
.|..++|.|++|||||++++.+++ +|.+++ +..++..
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~-lg~~~i--d~D~~~~ 39 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD-LGINVI--DADIIAR 39 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH-TTCEEE--EHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH-cCCEEE--EccHHHH
Confidence 478999999999999999999998 886554 4545443
No 199
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.42 E-value=0.00013 Score=62.25 Aligned_cols=22 Identities=23% Similarity=0.247 Sum_probs=19.3
Q ss_pred CCCeEEEeecCCCCCHHHHHHH
Q 019334 72 KVPLILGIWGGKGQGKSFQTEL 93 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllara 93 (342)
..+-.++|.||+|||||+++++
T Consensus 7 ~~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 7 PELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp ESSEEEEEECCTTSCHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHH
Confidence 4557899999999999999994
No 200
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.42 E-value=0.00014 Score=66.46 Aligned_cols=25 Identities=16% Similarity=0.154 Sum_probs=21.6
Q ss_pred CeEEEeecCCCCCHHHHHHHHHHHh
Q 019334 74 PLILGIWGGKGQGKSFQTELIFQAM 98 (342)
Q Consensus 74 PlglgL~GPPG~GKTllaravA~~~ 98 (342)
-..++|.||||||||++++.+|..+
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3579999999999999999998643
No 201
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.41 E-value=7e-05 Score=65.51 Aligned_cols=28 Identities=21% Similarity=0.307 Sum_probs=25.6
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHhC
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQAMG 99 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~~g 99 (342)
+.+..++|.||+|||||+++++++..+.
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 5668999999999999999999999875
No 202
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=97.40 E-value=8.6e-05 Score=64.60 Aligned_cols=36 Identities=17% Similarity=0.240 Sum_probs=29.9
Q ss_pred CeEEEeecCCCCCHHHHHHHHHHHhCCceEEeeccccc
Q 019334 74 PLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELE 111 (342)
Q Consensus 74 PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~ 111 (342)
|..++|.||||||||++++.+|+.+|++++ +.++++
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~g~~~~--~~d~~~ 38 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASELSMIYV--DTGAMY 38 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCEEE--EHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCcee--cCChHH
Confidence 567999999999999999999999997664 444443
No 203
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=97.40 E-value=0.00012 Score=65.05 Aligned_cols=36 Identities=25% Similarity=0.403 Sum_probs=29.6
Q ss_pred EEEeecCCCCCHHHHHHHHHHHhCCceEEeeccccccc
Q 019334 76 ILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESE 113 (342)
Q Consensus 76 glgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~ 113 (342)
.++|.||||||||++|+.+|+.+|+ ..++.++++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~--~~i~~dd~~r~ 37 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSL--AHIESGGIFRE 37 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTC--EEEEHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC--eEEchHHHHHH
Confidence 5789999999999999999999986 45566666554
No 204
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.39 E-value=0.00011 Score=67.67 Aligned_cols=39 Identities=23% Similarity=0.357 Sum_probs=31.9
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccc
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELES 112 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s 112 (342)
..|..+.|.||||||||++++++|+.+|.++ ++.++++.
T Consensus 7 ~~~~~i~i~G~~GsGKsTla~~la~~lg~~~--~d~g~~~r 45 (233)
T 3r20_A 7 SGSLVVAVDGPAGTGKSSVSRGLARALGARY--LDTGAMYR 45 (233)
T ss_dssp --CCEEEEECCTTSSHHHHHHHHHHHHTCEE--EEHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCCc--ccCCcHHH
Confidence 3478899999999999999999999999554 67777754
No 205
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.38 E-value=0.00035 Score=67.74 Aligned_cols=78 Identities=13% Similarity=0.144 Sum_probs=47.2
Q ss_pred HHHHHHHhhcCCCCCeEEEeecCCCCCHHHHHHHHHHHhC----CceEEeec-cccc---------ccccCCcHHHHHHH
Q 019334 60 IVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIFQAMG----IEPVIMSA-GELE---------SERAGEPGKLIRER 125 (342)
Q Consensus 60 i~K~~l~~~~~~k~PlglgL~GPPG~GKTllaravA~~~g----~~~i~vs~-~eL~---------s~~~GEsEr~iR~~ 125 (342)
++++++. ...-.++|.||+|||||++.+++++... -.++.+.- .|+. ...+|.......+.
T Consensus 114 ~l~~l~~-----~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~ 188 (356)
T 3jvv_A 114 VFKRVSD-----VPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEA 188 (356)
T ss_dssp HHHHHHH-----CSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHH
T ss_pred HHHHHHh-----CCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHH
Confidence 4555544 3334789999999999999999987653 33333321 1211 11233332333444
Q ss_pred HHHHHHhhhhcCCceEEEeecc
Q 019334 126 YRTASQVVQNQGKMSCLMINDI 147 (342)
Q Consensus 126 F~~A~e~~~~~~~PcILfIDEI 147 (342)
.+.|. ...|.+|++||+
T Consensus 189 La~aL-----~~~PdvillDEp 205 (356)
T 3jvv_A 189 LRSAL-----REDPDIILVGEM 205 (356)
T ss_dssp HHHHT-----TSCCSEEEESCC
T ss_pred HHHHh-----hhCcCEEecCCC
Confidence 44443 467999999998
No 206
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=97.37 E-value=0.00033 Score=63.92 Aligned_cols=35 Identities=20% Similarity=0.195 Sum_probs=28.1
Q ss_pred CeEEEeecCCCCCHHHHHHHHHHHh-CCceEEeecccc
Q 019334 74 PLILGIWGGKGQGKSFQTELIFQAM-GIEPVIMSAGEL 110 (342)
Q Consensus 74 PlglgL~GPPG~GKTllaravA~~~-g~~~i~vs~~eL 110 (342)
|..++|.||||||||++|+.+++++ |+. .++..++
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~~~~~~~--~i~~D~~ 37 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFY--NINRDDY 37 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEE--EECHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhCCCcE--EecccHH
Confidence 6789999999999999999999974 654 4454444
No 207
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=97.35 E-value=0.00012 Score=67.97 Aligned_cols=37 Identities=24% Similarity=0.313 Sum_probs=30.0
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHhCCceEEeeccccc
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELE 111 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~ 111 (342)
+.|..|+|.||||||||++|+.++ ++|+++ ++..++.
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La-~lg~~~--id~D~~~ 109 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLK-NLGAYI--IDSDHLG 109 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHH-HHTCEE--EEHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH-HCCCcE--EehhHHH
Confidence 457899999999999999999999 688765 4455553
No 208
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=97.34 E-value=0.0004 Score=69.18 Aligned_cols=24 Identities=29% Similarity=0.271 Sum_probs=21.5
Q ss_pred CCeEEEeecCCCCCHHHHHHHHHH
Q 019334 73 VPLILGIWGGKGQGKSFQTELIFQ 96 (342)
Q Consensus 73 ~PlglgL~GPPG~GKTllaravA~ 96 (342)
.+..++|+||+|+|||++|+.++.
T Consensus 146 ~~~~v~I~G~~GiGKTtLa~~~~~ 169 (591)
T 1z6t_A 146 EPGWVTIHGMAGCGKSVLAAEAVR 169 (591)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHC
T ss_pred CCceEEEEcCCCCCHHHHHHHHHh
Confidence 467899999999999999999874
No 209
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=97.33 E-value=0.00011 Score=65.21 Aligned_cols=39 Identities=26% Similarity=0.431 Sum_probs=31.5
Q ss_pred CCeEEEeecCCCCCHHHHHHHHHHHhCCceEEeeccccccc
Q 019334 73 VPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESE 113 (342)
Q Consensus 73 ~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~ 113 (342)
....++|.|++|||||++++.+++.+|++++ ++.++...
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~lg~~vi--d~D~~~~~ 49 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKYGAHVV--NVDRIGHE 49 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHCCEEE--EHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhcCCEEE--ECcHHHHH
Confidence 4478999999999999999999999997665 55555543
No 210
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.33 E-value=0.00012 Score=64.74 Aligned_cols=23 Identities=17% Similarity=0.138 Sum_probs=21.1
Q ss_pred EEEeecCCCCCHHHHHHHHHHHh
Q 019334 76 ILGIWGGKGQGKSFQTELIFQAM 98 (342)
Q Consensus 76 glgL~GPPG~GKTllaravA~~~ 98 (342)
.++|.||+|||||++++.++..+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 47899999999999999999876
No 211
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=97.33 E-value=0.00017 Score=64.32 Aligned_cols=39 Identities=21% Similarity=0.308 Sum_probs=32.0
Q ss_pred CCCCeEEEeecCCCCCHHHHHHHHHHHhCCceEEeeccccc
Q 019334 71 VKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELE 111 (342)
Q Consensus 71 ~k~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~ 111 (342)
...+..++|.||||||||++++.+|+++|+++ ++.++++
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~--~d~d~~~ 51 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDFGFTY--LDTGAMY 51 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHHCCEE--EEHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHcCCce--ecCCCee
Confidence 34567899999999999999999999999765 4566665
No 212
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.30 E-value=0.00077 Score=66.23 Aligned_cols=38 Identities=21% Similarity=0.032 Sum_probs=28.1
Q ss_pred CCCCCeEEEeecCCCCCHHHHHHHHHHH----hCCceEEeec
Q 019334 70 NVKVPLILGIWGGKGQGKSFQTELIFQA----MGIEPVIMSA 107 (342)
Q Consensus 70 ~~k~PlglgL~GPPG~GKTllaravA~~----~g~~~i~vs~ 107 (342)
|+.+--.++|.||||+|||++|..+|.. .|.+++.+|.
T Consensus 196 Gl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl 237 (444)
T 2q6t_A 196 TLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL 237 (444)
T ss_dssp CCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred CcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 4444467899999999999999887754 3556666554
No 213
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=97.29 E-value=0.00053 Score=66.75 Aligned_cols=36 Identities=19% Similarity=0.154 Sum_probs=31.6
Q ss_pred CCeEEEeecCCCCCHHHHHHHHHHHhCCceEEeecc
Q 019334 73 VPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAG 108 (342)
Q Consensus 73 ~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~ 108 (342)
.|+.+.|.||+|+|||.++..+|++++..+|..+.-
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~ 74 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKM 74 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCCCcEEccccc
Confidence 346788999999999999999999999988887665
No 214
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.29 E-value=0.00039 Score=66.79 Aligned_cols=29 Identities=34% Similarity=0.521 Sum_probs=26.7
Q ss_pred CCCCeEEEeecCCCCCHHHHHHHHHHHhC
Q 019334 71 VKVPLILGIWGGKGQGKSFQTELIFQAMG 99 (342)
Q Consensus 71 ~k~PlglgL~GPPG~GKTllaravA~~~g 99 (342)
.+.|.+++|.||+|||||+++++++..++
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 46789999999999999999999999876
No 215
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.28 E-value=0.00017 Score=66.65 Aligned_cols=72 Identities=15% Similarity=0.248 Sum_probs=44.6
Q ss_pred CCCCeEEEeecCCCCCHHHHHHHHHHHhCCc---eEEeecccc-----------cccccCCcHHHHHHHHHHHHHhhhhc
Q 019334 71 VKVPLILGIWGGKGQGKSFQTELIFQAMGIE---PVIMSAGEL-----------ESERAGEPGKLIRERYRTASQVVQNQ 136 (342)
Q Consensus 71 ~k~PlglgL~GPPG~GKTllaravA~~~g~~---~i~vs~~eL-----------~s~~~GEsEr~iR~~F~~A~e~~~~~ 136 (342)
++.--.++|.||+|||||++.++++...... -|.+.+..+ ....+|.....+|...+.|..
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~~~v~q~~~gl~~~~l~~~la~aL~----- 96 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALR----- 96 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHHH-----
T ss_pred hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCcceeeeHHHhCCCHHHHHHHHHHHHh-----
Confidence 3445689999999999999999999865321 222222111 111223222345655555542
Q ss_pred CCceEEEeecc
Q 019334 137 GKMSCLMINDI 147 (342)
Q Consensus 137 ~~PcILfIDEI 147 (342)
..|.+|++||.
T Consensus 97 ~~p~illlDEp 107 (261)
T 2eyu_A 97 EDPDVIFVGEM 107 (261)
T ss_dssp HCCSEEEESCC
T ss_pred hCCCEEEeCCC
Confidence 36999999998
No 216
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.28 E-value=0.0008 Score=63.93 Aligned_cols=70 Identities=16% Similarity=0.283 Sum_probs=45.0
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHh---CCceEEeecccccc---------------------cccCCcHHHHHHHHH
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQAM---GIEPVIMSAGELES---------------------ERAGEPGKLIRERYR 127 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~~---g~~~i~vs~~eL~s---------------------~~~GEsEr~iR~~F~ 127 (342)
+.|..++|.||+|||||+++..+|..+ |-.+..++. +.+. ..-|++.+.+.+.+.
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~-D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~ 180 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAA-DTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVA 180 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEE-CTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcc-ccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHH
Confidence 456789999999999999999999754 444444432 2221 112455555444444
Q ss_pred HHHHhhhhcCCceEEEeecc
Q 019334 128 TASQVVQNQGKMSCLMINDI 147 (342)
Q Consensus 128 ~A~e~~~~~~~PcILfIDEI 147 (342)
.|. ...|.+|+||+-
T Consensus 181 ~a~-----~~~~dvvIiDtp 195 (306)
T 1vma_A 181 HAL-----ARNKDVVIIDTA 195 (306)
T ss_dssp HHH-----HTTCSEEEEEEC
T ss_pred HHH-----hcCCCEEEEECC
Confidence 432 356899999964
No 217
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.24 E-value=0.00017 Score=62.38 Aligned_cols=33 Identities=24% Similarity=0.554 Sum_probs=28.0
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHhC--CceEE
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQAMG--IEPVI 104 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~~g--~~~i~ 104 (342)
+.+..++|.||+|||||++++.+++.++ +.++.
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~ 38 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALARTLGERVALLP 38 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHHHGGGEEEEE
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhCCCeEEEe
Confidence 5678999999999999999999999988 55544
No 218
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=97.22 E-value=0.00016 Score=66.80 Aligned_cols=38 Identities=29% Similarity=0.476 Sum_probs=31.2
Q ss_pred CeEEEeecCCCCCHHHHHHHHHHHhCCceEEeeccccccc
Q 019334 74 PLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESE 113 (342)
Q Consensus 74 PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~ 113 (342)
-.-++|.||||+|||++|+.+|+++|++ .+|.++++..
T Consensus 8 ~~~~~~~G~pGsGKsT~a~~L~~~~g~~--~is~gdllR~ 45 (230)
T 3gmt_A 8 HMRLILLGAPGAGKGTQANFIKEKFGIP--QISTGDMLRA 45 (230)
T ss_dssp -CEEEEECCTTSCHHHHHHHHHHHHTCC--EECHHHHHHH
T ss_pred ccceeeECCCCCCHHHHHHHHHHHhCCC--eeechHHHHH
Confidence 3568999999999999999999999965 5567777653
No 219
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=97.21 E-value=0.00063 Score=68.97 Aligned_cols=42 Identities=19% Similarity=0.456 Sum_probs=32.9
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHh---CCceEEeeccccccc
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQAM---GIEPVIMSAGELESE 113 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~~---g~~~i~vs~~eL~s~ 113 (342)
..|..|+|.|+||+|||++|+.+|+.+ ++....++.+++...
T Consensus 33 ~~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r~~ 77 (520)
T 2axn_A 33 NSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRRE 77 (520)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHHHH
Confidence 356789999999999999999999998 455556676665443
No 220
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.21 E-value=0.00014 Score=63.60 Aligned_cols=31 Identities=13% Similarity=0.008 Sum_probs=23.2
Q ss_pred eEEEeecCCCCCHHHHHHHHHHH---hCCceEEe
Q 019334 75 LILGIWGGKGQGKSFQTELIFQA---MGIEPVIM 105 (342)
Q Consensus 75 lglgL~GPPG~GKTllaravA~~---~g~~~i~v 105 (342)
.+.+++||||+|||+++.-++.. .|...+.+
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~ 37 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVF 37 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 57889999999999998655544 36555554
No 221
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.21 E-value=0.00026 Score=64.23 Aligned_cols=36 Identities=14% Similarity=0.298 Sum_probs=31.0
Q ss_pred CeEEEeecCCCCCHHHHHHHHHHHhCCceEEeeccccc
Q 019334 74 PLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELE 111 (342)
Q Consensus 74 PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~ 111 (342)
...++|-||+|||||++++++|+++|..+ ++.++++
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg~~~--~d~g~i~ 62 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLNWRL--LDSGAIY 62 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTTCEE--EEHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCCCc--CCCCcee
Confidence 46899999999999999999999999654 5777776
No 222
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.19 E-value=0.0002 Score=61.13 Aligned_cols=28 Identities=25% Similarity=0.323 Sum_probs=24.5
Q ss_pred CCCCeEEEeecCCCCCHHHHHHHHHHHh
Q 019334 71 VKVPLILGIWGGKGQGKSFQTELIFQAM 98 (342)
Q Consensus 71 ~k~PlglgL~GPPG~GKTllaravA~~~ 98 (342)
+..+..++|.||+|||||++++++++.+
T Consensus 3 i~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 3 NEKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp -CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3456789999999999999999999887
No 223
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.17 E-value=0.00038 Score=62.55 Aligned_cols=27 Identities=19% Similarity=0.217 Sum_probs=23.7
Q ss_pred CCeEEEeecCCCCCHHHHHHHHHHHhC
Q 019334 73 VPLILGIWGGKGQGKSFQTELIFQAMG 99 (342)
Q Consensus 73 ~PlglgL~GPPG~GKTllaravA~~~g 99 (342)
.+..+.|.||+|||||++++++++...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 346788999999999999999998875
No 224
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.15 E-value=0.0018 Score=64.63 Aligned_cols=35 Identities=23% Similarity=0.377 Sum_probs=27.9
Q ss_pred CCeEEEeecCCCCCHHHHHHHHHHHh---CCceEEeec
Q 019334 73 VPLILGIWGGKGQGKSFQTELIFQAM---GIEPVIMSA 107 (342)
Q Consensus 73 ~PlglgL~GPPG~GKTllaravA~~~---g~~~i~vs~ 107 (342)
.|..+++.||||+|||+++..+|..+ |-.+..+++
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~ 133 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAA 133 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEec
Confidence 47899999999999999999988544 666666553
No 225
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=97.12 E-value=0.00037 Score=67.35 Aligned_cols=41 Identities=12% Similarity=0.186 Sum_probs=35.4
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccc
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELES 112 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s 112 (342)
+.|..+.|.||+|+|||+++..+|++++..+|+.++-.++.
T Consensus 8 ~~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~qvY~ 48 (316)
T 3foz_A 8 SLPKAIFLMGPTASGKTALAIELRKILPVELISVDSALIYK 48 (316)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTTTTBT
T ss_pred CCCcEEEEECCCccCHHHHHHHHHHhCCCcEEecccccccc
Confidence 45788899999999999999999999999988887755543
No 226
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.11 E-value=0.00076 Score=63.38 Aligned_cols=42 Identities=26% Similarity=0.381 Sum_probs=33.2
Q ss_pred CCCCCeEEEeecCCCCCHHHHHHHHHHHhCC-----ceEEe-eccccc
Q 019334 70 NVKVPLILGIWGGKGQGKSFQTELIFQAMGI-----EPVIM-SAGELE 111 (342)
Q Consensus 70 ~~k~PlglgL~GPPG~GKTllaravA~~~g~-----~~i~v-s~~eL~ 111 (342)
..+.|..++|.||+|||||++++.++..++. +.+.+ +....+
T Consensus 27 ~~~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~ 74 (290)
T 1odf_A 27 GNKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFY 74 (290)
T ss_dssp TCCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGB
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEecccccc
Confidence 4567899999999999999999999988864 24444 666554
No 227
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.11 E-value=0.00034 Score=64.65 Aligned_cols=43 Identities=16% Similarity=0.200 Sum_probs=33.2
Q ss_pred CeEEEeecCCCCCHHHHHHHHHHHhCCceEEeeccccccccc-CCc
Q 019334 74 PLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERA-GEP 118 (342)
Q Consensus 74 PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~~~-GEs 118 (342)
...+.|.||||||||++++++|+.+|.+++- .++++.... |.+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d--~d~~~~~~~~g~~ 91 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFFD--CDTLIEQAMKGTS 91 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTCEEEE--HHHHHHHHSTTSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCcEEe--CcHHHHHHhcCcc
Confidence 3568899999999999999999999976654 455555444 444
No 228
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.09 E-value=0.0005 Score=58.66 Aligned_cols=38 Identities=16% Similarity=0.202 Sum_probs=29.5
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHhCCceEEeeccccc
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELE 111 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~ 111 (342)
+....++|.||+|||||++++++++... -+.+++..+.
T Consensus 5 ~~g~ii~l~Gp~GsGKSTl~~~L~~~~~--~~~~~~~~~~ 42 (205)
T 3tr0_A 5 NKANLFIISAPSGAGKTSLVRALVKALA--EIKISISHTT 42 (205)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHHSS--SEEECCCEEC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC--CeEEeceecc
Confidence 3456899999999999999999999863 5566554443
No 229
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.06 E-value=0.0031 Score=63.31 Aligned_cols=70 Identities=16% Similarity=0.230 Sum_probs=47.2
Q ss_pred CCeEEEeecCCCCCHHHHHHHHHHHh---CCceEEeeccc-------------------cccc-ccCCcHHHHHHHHHHH
Q 019334 73 VPLILGIWGGKGQGKSFQTELIFQAM---GIEPVIMSAGE-------------------LESE-RAGEPGKLIRERYRTA 129 (342)
Q Consensus 73 ~PlglgL~GPPG~GKTllaravA~~~---g~~~i~vs~~e-------------------L~s~-~~GEsEr~iR~~F~~A 129 (342)
.|..+++.||||+|||+++..+|..+ |..++.+++.- ++.. ...++...+++.++.|
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 47899999999999999999888644 66666666421 1211 1234566666776666
Q ss_pred HHhhhhcCCceEEEeecc
Q 019334 130 SQVVQNQGKMSCLMINDI 147 (342)
Q Consensus 130 ~e~~~~~~~PcILfIDEI 147 (342)
.. ..+.+++||..
T Consensus 179 ~~-----~~~DvVIIDTa 191 (443)
T 3dm5_A 179 KS-----KGVDIIIVDTA 191 (443)
T ss_dssp HH-----TTCSEEEEECC
T ss_pred Hh-----CCCCEEEEECC
Confidence 42 34788898853
No 230
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.06 E-value=0.00052 Score=64.31 Aligned_cols=29 Identities=24% Similarity=0.442 Sum_probs=26.3
Q ss_pred CCCCeEEEeecCCCCCHHHHHHHHHHHhC
Q 019334 71 VKVPLILGIWGGKGQGKSFQTELIFQAMG 99 (342)
Q Consensus 71 ~k~PlglgL~GPPG~GKTllaravA~~~g 99 (342)
.+.+.+++|.||+|||||+++++++..++
T Consensus 77 ~~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 77 QRIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 36678999999999999999999999876
No 231
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.05 E-value=0.0037 Score=58.73 Aligned_cols=37 Identities=16% Similarity=-0.076 Sum_probs=28.1
Q ss_pred CCCCCeEEEeecCCCCCHHHHHHHHHHHh---CCceEEee
Q 019334 70 NVKVPLILGIWGGKGQGKSFQTELIFQAM---GIEPVIMS 106 (342)
Q Consensus 70 ~~k~PlglgL~GPPG~GKTllaravA~~~---g~~~i~vs 106 (342)
|+.+--.++|.|+||+|||++|..+|... |.+.+.+|
T Consensus 64 Gl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~s 103 (315)
T 3bh0_A 64 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS 103 (315)
T ss_dssp SBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 55555689999999999999999888654 34555554
No 232
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=97.03 E-value=0.0016 Score=58.70 Aligned_cols=35 Identities=17% Similarity=0.152 Sum_probs=29.4
Q ss_pred EEeecCCCCCHHHHHHHHHHHhCCceEEeecc-ccc
Q 019334 77 LGIWGGKGQGKSFQTELIFQAMGIEPVIMSAG-ELE 111 (342)
Q Consensus 77 lgL~GPPG~GKTllaravA~~~g~~~i~vs~~-eL~ 111 (342)
++|+||+|+|||+++.+++.+.+...+.+... +|.
T Consensus 111 ~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~~~L~ 146 (237)
T 2fz4_A 111 GCIVLPTGSGKTHVAMAAINELSTPTLIVVPTLALA 146 (237)
T ss_dssp EEEEESSSTTHHHHHHHHHHHSCSCEEEEESSHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCCHHHH
Confidence 78899999999999999999988777777655 554
No 233
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.98 E-value=0.00036 Score=65.31 Aligned_cols=40 Identities=18% Similarity=0.254 Sum_probs=30.3
Q ss_pred CCeEEEeecCCCCCHHHHHHHHHHHhC---CceEEeecccccc
Q 019334 73 VPLILGIWGGKGQGKSFQTELIFQAMG---IEPVIMSAGELES 112 (342)
Q Consensus 73 ~PlglgL~GPPG~GKTllaravA~~~g---~~~i~vs~~eL~s 112 (342)
.+.+|+|.||+|||||++|+.+++.+| .++..++..+++.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~r 46 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHR 46 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGBS
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhhc
Confidence 467899999999999999999998776 5566778777763
No 234
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.98 E-value=0.00041 Score=60.30 Aligned_cols=28 Identities=18% Similarity=0.160 Sum_probs=25.1
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHhC
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQAMG 99 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~~g 99 (342)
-.+..++|.||||+|||++++++++.++
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 4567889999999999999999999985
No 235
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.94 E-value=0.00068 Score=57.66 Aligned_cols=35 Identities=17% Similarity=0.174 Sum_probs=27.2
Q ss_pred eEEEeecCCCCCHHHHHHHHHHHhCCceEEeecccc
Q 019334 75 LILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGEL 110 (342)
Q Consensus 75 lglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL 110 (342)
..++|.||||||||++++++++..+- -+.+++.++
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~~~g-~~~i~~d~~ 37 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQLDN-SAYIEGDII 37 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSSS-EEEEEHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhcccCC-eEEEcccch
Confidence 46889999999999999999986653 255665544
No 236
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=96.94 E-value=0.0019 Score=64.14 Aligned_cols=34 Identities=12% Similarity=-0.047 Sum_probs=26.6
Q ss_pred CeEEEeecCCCCCHHHHHHHHHHHh----CCceEEeec
Q 019334 74 PLILGIWGGKGQGKSFQTELIFQAM----GIEPVIMSA 107 (342)
Q Consensus 74 PlglgL~GPPG~GKTllaravA~~~----g~~~i~vs~ 107 (342)
-..++|.||||+|||++|-.+|... |.+++.+|.
T Consensus 242 G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~ 279 (503)
T 1q57_A 242 GEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAML 279 (503)
T ss_dssp TCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEES
T ss_pred CeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEec
Confidence 3578999999999999998888654 556666654
No 237
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.93 E-value=0.00064 Score=66.08 Aligned_cols=35 Identities=17% Similarity=0.166 Sum_probs=30.6
Q ss_pred CeEEEeecCCCCCHHHHHHHHHHHhCCceEEeecc
Q 019334 74 PLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAG 108 (342)
Q Consensus 74 PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~ 108 (342)
+..++|.||+|+|||++|+.+|..+++.+|.++.=
T Consensus 7 ~~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds~ 41 (340)
T 3d3q_A 7 PFLIVIVGPTASGKTELSIEVAKKFNGEIISGDSM 41 (340)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTTEEEEECCSS
T ss_pred CceEEEECCCcCcHHHHHHHHHHHcCCceeccccc
Confidence 46899999999999999999999999777776554
No 238
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.93 E-value=0.001 Score=64.43 Aligned_cols=72 Identities=15% Similarity=0.248 Sum_probs=43.4
Q ss_pred CCCCeEEEeecCCCCCHHHHHHHHHHHhC----CceEEeecc-cc---------cccccCCcHHHHHHHHHHHHHhhhhc
Q 019334 71 VKVPLILGIWGGKGQGKSFQTELIFQAMG----IEPVIMSAG-EL---------ESERAGEPGKLIRERYRTASQVVQNQ 136 (342)
Q Consensus 71 ~k~PlglgL~GPPG~GKTllaravA~~~g----~~~i~vs~~-eL---------~s~~~GEsEr~iR~~F~~A~e~~~~~ 136 (342)
++..-.++|.||+|||||++.++++.... -.++.+..+ ++ ....+|.....++...+.|. .
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L-----~ 207 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAAL-----R 207 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHHHHT-----T
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecCCCHHHHHHHHHHHh-----h
Confidence 34556799999999999999999998653 233332211 11 11112222233344444443 3
Q ss_pred CCceEEEeecc
Q 019334 137 GKMSCLMINDI 147 (342)
Q Consensus 137 ~~PcILfIDEI 147 (342)
..|.+|++||+
T Consensus 208 ~~pd~illdE~ 218 (372)
T 2ewv_A 208 EDPDVIFVGEM 218 (372)
T ss_dssp SCCSEEEESCC
T ss_pred hCcCEEEECCC
Confidence 46999999998
No 239
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.92 E-value=0.0017 Score=58.64 Aligned_cols=72 Identities=13% Similarity=0.234 Sum_probs=51.7
Q ss_pred EEEeecCCCCCHHHHHHHHH---HHhCCceEEe---ecc------cccccccC------------C------cHHHHHHH
Q 019334 76 ILGIWGGKGQGKSFQTELIF---QAMGIEPVIM---SAG------ELESERAG------------E------PGKLIRER 125 (342)
Q Consensus 76 glgL~GPPG~GKTllaravA---~~~g~~~i~v---s~~------eL~s~~~G------------E------sEr~iR~~ 125 (342)
.|.+|+++|.|||+.|-++| ...|..+..+ .++ +++... + + .+...+..
T Consensus 30 ~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L-~v~~~~~g~gf~~~~~~~~~~~~~a~~~ 108 (196)
T 1g5t_A 30 IIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPH-GVEFQVMATGFTWETQNREADTAACMAV 108 (196)
T ss_dssp CEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGG-TCEEEECCTTCCCCGGGHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhC-CcEEEEcccccccCCCCcHHHHHHHHHH
Confidence 57789999999999997776 3446666666 332 344443 2 1 24677888
Q ss_pred HHHHHHhhhhcCCceEEEeecccc
Q 019334 126 YRTASQVVQNQGKMSCLMINDIDA 149 (342)
Q Consensus 126 F~~A~e~~~~~~~PcILfIDEIDA 149 (342)
+..|++.+. .++..+|++|||=-
T Consensus 109 l~~a~~~l~-~~~yDlvILDEi~~ 131 (196)
T 1g5t_A 109 WQHGKRMLA-DPLLDMVVLDELTY 131 (196)
T ss_dssp HHHHHHHTT-CTTCSEEEEETHHH
T ss_pred HHHHHHHHh-cCCCCEEEEeCCCc
Confidence 888888775 68899999999954
No 240
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=96.91 E-value=0.0015 Score=66.27 Aligned_cols=68 Identities=22% Similarity=0.402 Sum_probs=44.5
Q ss_pred EEEeecCCCCCHHHHHHHHHHHhCC--ceEEeecccccccccCCcHHHHHHHHHHH------------------------
Q 019334 76 ILGIWGGKGQGKSFQTELIFQAMGI--EPVIMSAGELESERAGEPGKLIRERYRTA------------------------ 129 (342)
Q Consensus 76 glgL~GPPG~GKTllaravA~~~g~--~~i~vs~~eL~s~~~GEsEr~iR~~F~~A------------------------ 129 (342)
.++|+||||||||+++..++..... ..+++.. -+||-.+.+++.|++-
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~V~~------~iGerttev~el~~~l~~~~~l~~tvvv~~~~~d~pg~r~ 226 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIHNIAQEHGGISVFA------GVGERTREGNDLYHEMKDSGVISKTAMVFGQMNEPPGARM 226 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHHHHHHHTCCCEEEE------EESSCHHHHHHHHHHHHHTSGGGGEEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCccHHHHHHHhhhhhccCcEEEEe------eeccCchHHHHHHHHhhhcCCcceeEEEEEcCCCCHHHHH
Confidence 5889999999999999988765432 2222222 2456555555554311
Q ss_pred ---------HHhhhh-cCCceEEEeecccc
Q 019334 130 ---------SQVVQN-QGKMSCLMINDIDA 149 (342)
Q Consensus 130 ---------~e~~~~-~~~PcILfIDEIDA 149 (342)
++..+. +|+-.+||+|+|-.
T Consensus 227 ~~~~~~ltiAEyFrd~~G~~VLl~~D~itR 256 (473)
T 1sky_E 227 RVALTGLTMAEYFRDEQGQDGLLFIDNIFR 256 (473)
T ss_dssp HHHHHHHHHHHHHHHHSCCEEEEEEECTHH
T ss_pred HHHHHHHHHHHHHHHhcCCcEEEEeccHHH
Confidence 222233 68999999999975
No 241
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.91 E-value=0.00064 Score=60.95 Aligned_cols=32 Identities=31% Similarity=0.581 Sum_probs=27.2
Q ss_pred CCCCCeEEEeecCCCCCHHHHHHHHHHHhCCc
Q 019334 70 NVKVPLILGIWGGKGQGKSFQTELIFQAMGIE 101 (342)
Q Consensus 70 ~~k~PlglgL~GPPG~GKTllaravA~~~g~~ 101 (342)
.++.+.+++|.||+|||||++++.+++.+|..
T Consensus 21 ~i~~g~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 21 QSMRPFLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp --CCSEEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 35667889999999999999999999998854
No 242
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.91 E-value=0.00046 Score=59.27 Aligned_cols=26 Identities=27% Similarity=0.275 Sum_probs=23.3
Q ss_pred CeEEEeecCCCCCHHHHHHHHHHHhC
Q 019334 74 PLILGIWGGKGQGKSFQTELIFQAMG 99 (342)
Q Consensus 74 PlglgL~GPPG~GKTllaravA~~~g 99 (342)
|.+++|.||+|||||++++++++...
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 46789999999999999999998764
No 243
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=96.89 E-value=0.00067 Score=60.04 Aligned_cols=37 Identities=24% Similarity=0.245 Sum_probs=32.0
Q ss_pred eEEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccccc
Q 019334 75 LILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESER 114 (342)
Q Consensus 75 lglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~~ 114 (342)
.+|.|.||+|||||++++.+|+++|++++ + ++++...
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg~~~~--D-~~~~~~~ 43 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYNIPLY--S-KELLDEV 43 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTTCCEE--C-HHHHHHT
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhCcCEE--C-HHHHHHH
Confidence 47999999999999999999999999987 5 6676543
No 244
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.86 E-value=0.00072 Score=57.86 Aligned_cols=26 Identities=15% Similarity=0.249 Sum_probs=23.2
Q ss_pred CeEEEeecCCCCCHHHHHHHHHHHhC
Q 019334 74 PLILGIWGGKGQGKSFQTELIFQAMG 99 (342)
Q Consensus 74 PlglgL~GPPG~GKTllaravA~~~g 99 (342)
...++|.||+|||||++++++++...
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 46789999999999999999999764
No 245
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.84 E-value=0.00079 Score=65.27 Aligned_cols=39 Identities=13% Similarity=0.146 Sum_probs=32.9
Q ss_pred CeEEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccc
Q 019334 74 PLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELES 112 (342)
Q Consensus 74 PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s 112 (342)
|..+.|.||+|+|||+++..+|++++..+|+.++-.++.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~QvYr 41 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSMQVYR 41 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGGGGBT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCccceeecCccccee
Confidence 457789999999999999999999998888777655553
No 246
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.83 E-value=0.002 Score=62.30 Aligned_cols=38 Identities=11% Similarity=-0.036 Sum_probs=29.1
Q ss_pred CCCCCeEEEeecCCCCCHHHHHHHHHHH---hCCceEEeec
Q 019334 70 NVKVPLILGIWGGKGQGKSFQTELIFQA---MGIEPVIMSA 107 (342)
Q Consensus 70 ~~k~PlglgL~GPPG~GKTllaravA~~---~g~~~i~vs~ 107 (342)
|+.+--.++|.|+||+|||++|..+|.. .|.+++.+|.
T Consensus 42 Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSl 82 (338)
T 4a1f_A 42 GFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSL 82 (338)
T ss_dssp SBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 5555568999999999999999888765 4566555544
No 247
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.81 E-value=0.0016 Score=58.60 Aligned_cols=34 Identities=12% Similarity=0.309 Sum_probs=27.8
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHhC--CceEEe
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQAMG--IEPVIM 105 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~~g--~~~i~v 105 (342)
+.+..+.|.||||||||++++.+++.++ ..++..
T Consensus 24 ~~g~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~~ 59 (229)
T 4eaq_A 24 AMSAFITFEGPEGSGKTTVINEVYHRLVKDYDVIMT 59 (229)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEE
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCceee
Confidence 4567888999999999999999999986 455443
No 248
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=96.78 E-value=0.0023 Score=66.93 Aligned_cols=38 Identities=16% Similarity=0.178 Sum_probs=33.3
Q ss_pred CCeEEEeecCCCCCHHHHHHHHHHHh---CCceEEeecccc
Q 019334 73 VPLILGIWGGKGQGKSFQTELIFQAM---GIEPVIMSAGEL 110 (342)
Q Consensus 73 ~PlglgL~GPPG~GKTllaravA~~~---g~~~i~vs~~eL 110 (342)
.|..|.|.|+||||||++++++++.+ |.+++.+++-.+
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~i 91 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 91 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHh
Confidence 46789999999999999999999999 999999875433
No 249
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.77 E-value=0.00039 Score=61.43 Aligned_cols=28 Identities=21% Similarity=0.252 Sum_probs=18.1
Q ss_pred CCCCeEEEeecCCCCCHHHHHHHHH-HHh
Q 019334 71 VKVPLILGIWGGKGQGKSFQTELIF-QAM 98 (342)
Q Consensus 71 ~k~PlglgL~GPPG~GKTllaravA-~~~ 98 (342)
++....++|.||+|||||+++++++ +..
T Consensus 24 v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 24 KSVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp EECCCEEEEECSCC----CHHHHHHC---
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 3445689999999999999999999 765
No 250
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.77 E-value=0.0047 Score=61.27 Aligned_cols=38 Identities=16% Similarity=-0.085 Sum_probs=28.2
Q ss_pred CCCCCeEEEeecCCCCCHHHHHHHHHHHh---CCceEEeec
Q 019334 70 NVKVPLILGIWGGKGQGKSFQTELIFQAM---GIEPVIMSA 107 (342)
Q Consensus 70 ~~k~PlglgL~GPPG~GKTllaravA~~~---g~~~i~vs~ 107 (342)
|+.+--.++|.|+||+|||++|-.+|... |.+.+.+|.
T Consensus 193 Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSl 233 (444)
T 3bgw_A 193 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 233 (444)
T ss_dssp SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECS
T ss_pred CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEEC
Confidence 34444579999999999999998877544 666666654
No 251
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=96.75 E-value=0.001 Score=60.43 Aligned_cols=37 Identities=19% Similarity=0.235 Sum_probs=31.4
Q ss_pred CeEEEeecCCCCCHHHHHHHHHHHhCCceEEeeccccccc
Q 019334 74 PLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESE 113 (342)
Q Consensus 74 PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~ 113 (342)
+.++.|.|++|||||++++.+|+++|++++ + ++++..
T Consensus 14 ~~iI~i~g~~gsGk~~i~~~la~~lg~~~~--d-~~~~~~ 50 (223)
T 3hdt_A 14 NLIITIEREYGSGGRIVGKKLAEELGIHFY--D-DDILKL 50 (223)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHTCEEE--C-HHHHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHcCCcEE--c-HHHHHH
Confidence 578999999999999999999999998874 4 555543
No 252
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=96.71 E-value=0.0011 Score=66.10 Aligned_cols=39 Identities=21% Similarity=0.130 Sum_probs=32.2
Q ss_pred CCeEEEeecCCCCCHHHHHHHHHHHhCCceEEeeccccc
Q 019334 73 VPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELE 111 (342)
Q Consensus 73 ~PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~ 111 (342)
+++.+.|.||+|+|||+++..+|+.++..+|++++-.++
T Consensus 1 ~~~~i~i~GptgsGKttla~~La~~~~~~iis~Ds~QvY 39 (409)
T 3eph_A 1 SKKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDSMQVY 39 (409)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHHHHTEEEEECCTTTTB
T ss_pred CCcEEEEECcchhhHHHHHHHHHHHCCCeEeecCcccee
Confidence 356889999999999999999999999888776553333
No 253
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.71 E-value=0.0089 Score=56.27 Aligned_cols=34 Identities=21% Similarity=0.350 Sum_probs=27.3
Q ss_pred CeEEEeecCCCCCHHHHHHHHHHHh---CCceEEeec
Q 019334 74 PLILGIWGGKGQGKSFQTELIFQAM---GIEPVIMSA 107 (342)
Q Consensus 74 PlglgL~GPPG~GKTllaravA~~~---g~~~i~vs~ 107 (342)
|..+++.||+|+|||+++..+|..+ |-.+..++.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~ 134 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGA 134 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEec
Confidence 7788999999999999999998665 555555544
No 254
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.66 E-value=0.0014 Score=62.40 Aligned_cols=69 Identities=12% Similarity=0.158 Sum_probs=45.9
Q ss_pred eEEEeecCCCCCHHHHHHHHHHHhCC--ceEEeecccccc-----c---cc-CCcHHHHHHHHHHHHHhhhhcCCceEEE
Q 019334 75 LILGIWGGKGQGKSFQTELIFQAMGI--EPVIMSAGELES-----E---RA-GEPGKLIRERYRTASQVVQNQGKMSCLM 143 (342)
Q Consensus 75 lglgL~GPPG~GKTllaravA~~~g~--~~i~vs~~eL~s-----~---~~-GEsEr~iR~~F~~A~e~~~~~~~PcILf 143 (342)
..++|.||+|||||++.++++..... ..|.+.+...+. . ++ | +....|...+.|. ...|.+|+
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~g-gg~~~r~~la~aL-----~~~p~ili 245 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFG-GNITSADCLKSCL-----RMRPDRII 245 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECB-TTBCHHHHHHHHT-----TSCCSEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeC-CChhHHHHHHHHh-----hhCCCEEE
Confidence 57999999999999999999987643 356665543211 1 12 1 2223445555553 35799999
Q ss_pred eecccc
Q 019334 144 INDIDA 149 (342)
Q Consensus 144 IDEIDA 149 (342)
+||.-+
T Consensus 246 ldE~~~ 251 (330)
T 2pt7_A 246 LGELRS 251 (330)
T ss_dssp ECCCCS
T ss_pred EcCCCh
Confidence 999764
No 255
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.65 E-value=0.006 Score=57.34 Aligned_cols=36 Identities=11% Similarity=0.164 Sum_probs=27.7
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHh----CCceEEeec
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQAM----GIEPVIMSA 107 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~~----g~~~i~vs~ 107 (342)
+.|..++|.||+|+|||+++..+|..+ |-.+..++.
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~ 142 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITT 142 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEEC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 346789999999999999999998644 545555543
No 256
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.62 E-value=0.0016 Score=60.23 Aligned_cols=35 Identities=17% Similarity=0.135 Sum_probs=26.9
Q ss_pred CCeEEEeecCCCCCHHHHHHHHHHH---hCCceEEeec
Q 019334 73 VPLILGIWGGKGQGKSFQTELIFQA---MGIEPVIMSA 107 (342)
Q Consensus 73 ~PlglgL~GPPG~GKTllaravA~~---~g~~~i~vs~ 107 (342)
.-+.+++.|+||||||+++-.+|.. .|..++.++.
T Consensus 5 g~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~ 42 (228)
T 2r8r_A 5 GRLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVV 42 (228)
T ss_dssp CCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEe
Confidence 3467999999999999998887754 4766655554
No 257
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=96.62 E-value=0.011 Score=59.34 Aligned_cols=25 Identities=24% Similarity=0.295 Sum_probs=22.9
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHH
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQ 96 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~ 96 (342)
..+..+.|+|++|+|||++|+.+++
T Consensus 150 ~~~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 150 LDSFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHH
Confidence 3568999999999999999999997
No 258
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.54 E-value=0.0076 Score=60.42 Aligned_cols=39 Identities=15% Similarity=0.114 Sum_probs=27.4
Q ss_pred CCCCeEEEeecCCCCCHHHHHHH--HHHHh--CCceEEeeccc
Q 019334 71 VKVPLILGIWGGKGQGKSFQTEL--IFQAM--GIEPVIMSAGE 109 (342)
Q Consensus 71 ~k~PlglgL~GPPG~GKTllara--vA~~~--g~~~i~vs~~e 109 (342)
+..-..++|.||+|||||+++++ ++... +-.-+.+++.+
T Consensus 36 i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~ 78 (525)
T 1tf7_A 36 LPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEE 78 (525)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS
T ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeC
Confidence 44456899999999999999999 44332 44455565533
No 259
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=96.53 E-value=0.008 Score=57.33 Aligned_cols=28 Identities=21% Similarity=0.268 Sum_probs=23.2
Q ss_pred CCCCeEEEeecCCCCCHHHHHHHHHHHhC
Q 019334 71 VKVPLILGIWGGKGQGKSFQTELIFQAMG 99 (342)
Q Consensus 71 ~k~PlglgL~GPPG~GKTllaravA~~~g 99 (342)
+.+- .++|.||.|||||++.+||+.-++
T Consensus 58 ~~~G-~~~lvG~NGaGKStLl~aI~~l~~ 85 (415)
T 4aby_A 58 LGGG-FCAFTGETGAGKSIIVDALGLLLG 85 (415)
T ss_dssp CCSS-EEEEEESHHHHHHHHTHHHHHHTT
T ss_pred cCCC-cEEEECCCCCCHHHHHHHHHHHhC
Confidence 4444 889999999999999999976654
No 260
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.52 E-value=0.0025 Score=56.52 Aligned_cols=24 Identities=29% Similarity=0.306 Sum_probs=21.2
Q ss_pred EEeecCCCCCHHHHHHHHHHHhCC
Q 019334 77 LGIWGGKGQGKSFQTELIFQAMGI 100 (342)
Q Consensus 77 lgL~GPPG~GKTllaravA~~~g~ 100 (342)
|.|.||+|+|||++++.+.++..-
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~ 27 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPD 27 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTT
T ss_pred EEEECCCCCCHHHHHHHHHHhCCC
Confidence 678999999999999999988643
No 261
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=96.51 E-value=0.011 Score=59.94 Aligned_cols=36 Identities=17% Similarity=0.208 Sum_probs=27.6
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHh---CCceEEeec
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQAM---GIEPVIMSA 107 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~~---g~~~i~vs~ 107 (342)
+.|..+.|.|+||+|||+++..+|..+ |..+..+++
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 446788999999999999999999654 666666655
No 262
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.50 E-value=0.0017 Score=56.62 Aligned_cols=29 Identities=17% Similarity=0.155 Sum_probs=24.2
Q ss_pred CCCCeEEEeecCCCCCHHHHHHHHHHHhC
Q 019334 71 VKVPLILGIWGGKGQGKSFQTELIFQAMG 99 (342)
Q Consensus 71 ~k~PlglgL~GPPG~GKTllaravA~~~g 99 (342)
+....+++|.||+|||||++++++++...
T Consensus 17 i~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 17 AAVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp --CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 44456899999999999999999999874
No 263
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.49 E-value=0.00067 Score=58.29 Aligned_cols=25 Identities=28% Similarity=0.328 Sum_probs=22.7
Q ss_pred EEEeecCCCCCHHHHHHHHHHHhCC
Q 019334 76 ILGIWGGKGQGKSFQTELIFQAMGI 100 (342)
Q Consensus 76 glgL~GPPG~GKTllaravA~~~g~ 100 (342)
.+.|.||+|||||++++.+++.++.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 5789999999999999999999864
No 264
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.47 E-value=0.0082 Score=60.13 Aligned_cols=74 Identities=15% Similarity=0.148 Sum_probs=46.3
Q ss_pred eEEEeecCCCCCHHHHHHHHHHHh-----CCceEEeecc---------------cccccccCCcH-HHHHHHH---HHHH
Q 019334 75 LILGIWGGKGQGKSFQTELIFQAM-----GIEPVIMSAG---------------ELESERAGEPG-KLIRERY---RTAS 130 (342)
Q Consensus 75 lglgL~GPPG~GKTllaravA~~~-----g~~~i~vs~~---------------eL~s~~~GEsE-r~iR~~F---~~A~ 130 (342)
--++|.||||||||++++.+|+.. ++.+|.+-.+ .++..-.-+|. ..++-.+ ..|
T Consensus 175 Qr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~I~~lIGER~~Ev~~~~~~~~~~vV~atadep~~~r~~~a~~alt~A- 253 (422)
T 3ice_A 175 QRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKA- 253 (422)
T ss_dssp CEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEEEEEEESSCHHHHHHHHTTCSSEEEEECTTSCHHHHHHHHHHHHHHH-
T ss_pred cEEEEecCCCCChhHHHHHHHHHHhhcCCCeeEEEEEecCChHHHHHHHHHhCeEEEEeCCCCCHHHHHHHHHHHHHHH-
Confidence 468999999999999999998753 5545544332 23333333333 2232222 222
Q ss_pred HhhhhcCCceEEEeecccc
Q 019334 131 QVVQNQGKMSCLMINDIDA 149 (342)
Q Consensus 131 e~~~~~~~PcILfIDEIDA 149 (342)
|..+..|+..+||+|+|-.
T Consensus 254 Eyfrd~G~dVLil~DslTR 272 (422)
T 3ice_A 254 KRLVEHKKDVIILLDSITR 272 (422)
T ss_dssp HHHHHTSCEEEEEEECHHH
T ss_pred HHHHhcCCCEEEEEeCchH
Confidence 2233479999999999986
No 265
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.45 E-value=0.002 Score=61.09 Aligned_cols=29 Identities=28% Similarity=0.487 Sum_probs=26.1
Q ss_pred CCCCeEEEeecCCCCCHHHHHHHHHHHhC
Q 019334 71 VKVPLILGIWGGKGQGKSFQTELIFQAMG 99 (342)
Q Consensus 71 ~k~PlglgL~GPPG~GKTllaravA~~~g 99 (342)
++.+.+++|.||+|||||+++++++..+.
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 56778999999999999999999998764
No 266
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=96.44 E-value=0.0028 Score=64.72 Aligned_cols=39 Identities=15% Similarity=0.152 Sum_probs=31.1
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHhC---CceEEeecccc
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQAMG---IEPVIMSAGEL 110 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~~g---~~~i~vs~~eL 110 (342)
+.|..+.|.|+||||||++|+++++.++ .++..+++..+
T Consensus 370 ~~~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~i 411 (546)
T 2gks_A 370 KQGFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVV 411 (546)
T ss_dssp GCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHH
T ss_pred ccceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHh
Confidence 4567899999999999999999998775 45666665444
No 267
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=96.42 E-value=0.0053 Score=63.08 Aligned_cols=42 Identities=10% Similarity=0.082 Sum_probs=34.6
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHhC----CceEEeeccccccc
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQAMG----IEPVIMSAGELESE 113 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~~g----~~~i~vs~~eL~s~ 113 (342)
..|..|.|.|+||+|||++|+++++.++ .+++.+++..+...
T Consensus 394 q~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ir~~ 439 (573)
T 1m8p_A 394 TQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVRHE 439 (573)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHHHHH
T ss_pred ccceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHHHHH
Confidence 4567899999999999999999999987 77888887655443
No 268
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=96.42 E-value=0.0048 Score=65.40 Aligned_cols=26 Identities=27% Similarity=0.295 Sum_probs=23.2
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHH
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQA 97 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~ 97 (342)
..++.+.|+|++|+|||+||+.++..
T Consensus 145 ~~~~~v~i~G~gG~GKTtLa~~~~~~ 170 (1249)
T 3sfz_A 145 GEPGWVTIYGMAGCGKSVLAAEAVRD 170 (1249)
T ss_dssp TSCEEEEEECSTTSSHHHHHHHHTCC
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHhcC
Confidence 45788999999999999999998865
No 269
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=96.41 E-value=0.0023 Score=56.96 Aligned_cols=29 Identities=28% Similarity=0.253 Sum_probs=25.7
Q ss_pred CeEEEeecCCCCCHHHHHHHHHHHh-CCce
Q 019334 74 PLILGIWGGKGQGKSFQTELIFQAM-GIEP 102 (342)
Q Consensus 74 PlglgL~GPPG~GKTllaravA~~~-g~~~ 102 (342)
|+.+.|.|++|||||++++.+++.+ ++.+
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~~~~~ 31 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYPEWHV 31 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCTTSEE
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcCCCee
Confidence 6789999999999999999999999 5533
No 270
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.39 E-value=0.0018 Score=57.47 Aligned_cols=28 Identities=21% Similarity=0.250 Sum_probs=23.6
Q ss_pred CCCCeEEEeecCCCCCHHHHHHHHHHHh
Q 019334 71 VKVPLILGIWGGKGQGKSFQTELIFQAM 98 (342)
Q Consensus 71 ~k~PlglgL~GPPG~GKTllaravA~~~ 98 (342)
++....++|.||+|||||++++++++..
T Consensus 20 i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp --CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3445679999999999999999999977
No 271
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.36 E-value=0.0018 Score=56.47 Aligned_cols=27 Identities=30% Similarity=0.330 Sum_probs=22.7
Q ss_pred CCeEEEeecCCCCCHHHHHHHHHHHhC
Q 019334 73 VPLILGIWGGKGQGKSFQTELIFQAMG 99 (342)
Q Consensus 73 ~PlglgL~GPPG~GKTllaravA~~~g 99 (342)
++..++|.||+|+|||++++++++...
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 456789999999999999999998764
No 272
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.33 E-value=0.0022 Score=65.75 Aligned_cols=32 Identities=28% Similarity=0.460 Sum_probs=25.1
Q ss_pred eEEEeecCCCCCHHHHHHHHHHH---hCCceEEee
Q 019334 75 LILGIWGGKGQGKSFQTELIFQA---MGIEPVIMS 106 (342)
Q Consensus 75 lglgL~GPPG~GKTllaravA~~---~g~~~i~vs 106 (342)
..++|.||||||||+++.+++.. .|..++.+.
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~A 239 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCA 239 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEec
Confidence 57889999999999999998864 455555543
No 273
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.29 E-value=0.0012 Score=59.78 Aligned_cols=32 Identities=25% Similarity=0.147 Sum_probs=26.8
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHh-CCceE
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQAM-GIEPV 103 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~~-g~~~i 103 (342)
+.|..|.|.|++|||||++++.+++.+ ++.++
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~~~~~i 54 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLCEDWEVV 54 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGCTTEEEE
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhcCCCEEE
Confidence 567889999999999999999999998 54443
No 274
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.28 E-value=0.009 Score=51.23 Aligned_cols=28 Identities=21% Similarity=0.350 Sum_probs=24.6
Q ss_pred CCCCeEEEeecCCCCCHHHHHHHHHHHh
Q 019334 71 VKVPLILGIWGGKGQGKSFQTELIFQAM 98 (342)
Q Consensus 71 ~k~PlglgL~GPPG~GKTllaravA~~~ 98 (342)
++.--.++|.||.|||||++++++++.+
T Consensus 30 i~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 30 TEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 4444679999999999999999999987
No 275
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=96.24 E-value=0.0077 Score=62.38 Aligned_cols=33 Identities=18% Similarity=0.314 Sum_probs=26.5
Q ss_pred EEEeecCCCCCHHHHHHHHHHHh-------CCceEEeecc
Q 019334 76 ILGIWGGKGQGKSFQTELIFQAM-------GIEPVIMSAG 108 (342)
Q Consensus 76 glgL~GPPG~GKTllaravA~~~-------g~~~i~vs~~ 108 (342)
.++|.|.+|+|||.+.+.+...+ .+.|+.++..
T Consensus 216 HlLIaG~TGSGKS~~L~tlI~sLl~~~sP~ev~lilIDpK 255 (574)
T 2iut_A 216 HLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIMIDPK 255 (574)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECSS
T ss_pred eeEEECCCCCCHHHHHHHHHHHHHHhCCCcceEEEEeCCC
Confidence 47899999999999999877654 3568888765
No 276
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=96.24 E-value=0.012 Score=63.99 Aligned_cols=21 Identities=24% Similarity=0.134 Sum_probs=19.5
Q ss_pred eEEEeecCCCCCHHHHHHHHH
Q 019334 75 LILGIWGGKGQGKSFQTELIF 95 (342)
Q Consensus 75 lglgL~GPPG~GKTllaravA 95 (342)
.+++|.||.|+|||++.|.++
T Consensus 674 ~i~~ItGPNGaGKSTlLr~i~ 694 (918)
T 3thx_B 674 RVMIITGPNMGGKSSYIKQVA 694 (918)
T ss_dssp CEEEEESCCCHHHHHHHHHHH
T ss_pred eEEEEECCCCCchHHHHHHHH
Confidence 578999999999999999987
No 277
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=96.23 E-value=0.0062 Score=54.62 Aligned_cols=34 Identities=24% Similarity=0.373 Sum_probs=27.1
Q ss_pred CCeEEEeecCCCCCHHHHHHHHHHHhC---CceEEee
Q 019334 73 VPLILGIWGGKGQGKSFQTELIFQAMG---IEPVIMS 106 (342)
Q Consensus 73 ~PlglgL~GPPG~GKTllaravA~~~g---~~~i~vs 106 (342)
.+..+.|-||+|||||++++.+++.+. .+++...
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~ 41 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTR 41 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCccccc
Confidence 356788899999999999999998774 5555544
No 278
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=96.18 E-value=0.011 Score=65.79 Aligned_cols=26 Identities=19% Similarity=0.124 Sum_probs=22.8
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHH
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQA 97 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~ 97 (342)
..++.++|+||+|.|||++|+.++..
T Consensus 148 d~~RVV~IvGmGGIGKTTLAk~Vy~d 173 (1221)
T 1vt4_I 148 RPAKNVLIDGVLGSGKTWVALDVCLS 173 (1221)
T ss_dssp CSSCEEEECCSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCccHHHHHHHHHHh
Confidence 34689999999999999999999864
No 279
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=96.17 E-value=0.0071 Score=55.12 Aligned_cols=34 Identities=18% Similarity=0.242 Sum_probs=24.5
Q ss_pred CCeEEEeecCCCCCHHHHHHHHHHHh-------CCceEEee
Q 019334 73 VPLILGIWGGKGQGKSFQTELIFQAM-------GIEPVIMS 106 (342)
Q Consensus 73 ~PlglgL~GPPG~GKTllaravA~~~-------g~~~i~vs 106 (342)
..+.+.|-||+|||||++++.+++.+ |.+++...
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~r 64 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTR 64 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeeec
Confidence 35678889999999999999999887 66555544
No 280
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=96.17 E-value=0.01 Score=58.72 Aligned_cols=36 Identities=11% Similarity=0.276 Sum_probs=28.1
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHhCC---ceEEeec
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQAMGI---EPVIMSA 107 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~~g~---~~i~vs~ 107 (342)
+.|..|+|.|.||+|||++++.+|+.++. +...++.
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~ 75 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNV 75 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEec
Confidence 45678899999999999999999998754 4444443
No 281
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=96.14 E-value=0.031 Score=53.17 Aligned_cols=35 Identities=26% Similarity=0.283 Sum_probs=27.2
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHh---CCceEEee
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQAM---GIEPVIMS 106 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~~---g~~~i~vs 106 (342)
+.+..++|.|+||+|||+++.+++..+ |..+..++
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~ 114 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLA 114 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEe
Confidence 456789999999999999999998775 54444433
No 282
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=96.08 E-value=0.0046 Score=63.48 Aligned_cols=24 Identities=33% Similarity=0.461 Sum_probs=20.0
Q ss_pred eEEEeecCCCCCHHHHHHHHHHHh
Q 019334 75 LILGIWGGKGQGKSFQTELIFQAM 98 (342)
Q Consensus 75 lglgL~GPPG~GKTllaravA~~~ 98 (342)
..++|+||||||||+++..+...+
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHH
Confidence 578999999999999887776544
No 283
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=96.07 E-value=0.0094 Score=53.90 Aligned_cols=31 Identities=16% Similarity=0.176 Sum_probs=26.7
Q ss_pred CCeEEEeecCCCCCHHHHHHHHHHHhCCceE
Q 019334 73 VPLILGIWGGKGQGKSFQTELIFQAMGIEPV 103 (342)
Q Consensus 73 ~PlglgL~GPPG~GKTllaravA~~~g~~~i 103 (342)
.++.+.+-||+|||||++++.+++.++.+..
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~l~~~~~ 34 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKKLQPNCK 34 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHHHCSSEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcccce
Confidence 3567888999999999999999999997433
No 284
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.03 E-value=0.037 Score=54.93 Aligned_cols=37 Identities=19% Similarity=0.263 Sum_probs=29.6
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHh----CCceEEeecc
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQAM----GIEPVIMSAG 108 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~~----g~~~i~vs~~ 108 (342)
+.|..+.+.|++|+|||+++-.+|..+ |-.++.+++.
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D 138 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSAD 138 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecC
Confidence 457889999999999999998888554 7677776664
No 285
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.03 E-value=0.012 Score=56.09 Aligned_cols=35 Identities=20% Similarity=0.219 Sum_probs=27.5
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHh---CCceEEee
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQAM---GIEPVIMS 106 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~~---g~~~i~vs 106 (342)
+.|..++|.||+|+|||+++..+|..+ |-.++.++
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid 140 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAA 140 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 557899999999999999999998654 44555544
No 286
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.96 E-value=0.021 Score=53.45 Aligned_cols=34 Identities=18% Similarity=0.241 Sum_probs=26.3
Q ss_pred CCeEEEeecCCCCCHHHHHHHHHHHh---CCceEEee
Q 019334 73 VPLILGIWGGKGQGKSFQTELIFQAM---GIEPVIMS 106 (342)
Q Consensus 73 ~PlglgL~GPPG~GKTllaravA~~~---g~~~i~vs 106 (342)
.|..+++.||+|+|||+++..+|..+ |-.+..++
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~ 133 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVA 133 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEec
Confidence 46788899999999999999998654 44444443
No 287
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=95.92 E-value=0.012 Score=44.51 Aligned_cols=54 Identities=19% Similarity=0.091 Sum_probs=40.2
Q ss_pred CCCHHHHHHHHHHHhhcCCCC-HHHHHHHhhcCCCCccchHHHHHHHHHHHHHHHHHHH
Q 019334 223 QPNLEDILNIVHRMYEKDGIT-KDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDD 280 (342)
Q Consensus 223 vP~~~~R~~Il~~~~~~~~~s-~~di~~lvd~f~~~~~df~gAlrs~~~~e~ir~w~~~ 280 (342)
.||.++|.+||+.++++..++ ..|+..|+.. +..|+||....++.++....+.+
T Consensus 2 lPd~~~R~~Il~~~l~~~~~~~~~dl~~la~~----t~G~SGADi~~l~~eA~~~a~~~ 56 (78)
T 3kw6_A 2 PPNEEARLDILKIHSRKMNLTRGINLRKIAEL----MPGASGAEVKGVCTEAGMYALRE 56 (78)
T ss_dssp CCCHHHHHHHHHHHHTTSEECTTCCHHHHHHT----CTTCCHHHHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHhcCCCCCCccCHHHHHHH----cCCCCHHHHHHHHHHHHHHHHHh
Confidence 499999999999999987653 4566666643 23567887788888887666655
No 288
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.91 E-value=0.0043 Score=56.71 Aligned_cols=38 Identities=21% Similarity=0.063 Sum_probs=32.8
Q ss_pred CeEEEeecCCCCCHHHHHHHHHHHhCCceEEeecccccc
Q 019334 74 PLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELES 112 (342)
Q Consensus 74 PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s 112 (342)
..+++|.||+|+|||.+|.++++..+ .+|..+.-.++.
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdDs~~v~~ 71 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRGH-RLIADDRVDVYQ 71 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTTC-EEEESSEEEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhCC-eEEecchhheee
Confidence 47899999999999999999999877 888877776664
No 289
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=95.90 E-value=0.0066 Score=55.08 Aligned_cols=50 Identities=22% Similarity=0.345 Sum_probs=34.4
Q ss_pred CeEEEeecCCCCCHHHHHHHHHHHhCCceEEeeccccccccc---CCcHHHHHHHH
Q 019334 74 PLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERA---GEPGKLIRERY 126 (342)
Q Consensus 74 PlglgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~s~~~---GEsEr~iR~~F 126 (342)
-..|||.|..|||||+.++.+++ +|+++| ++.++..... |+.=+.|.+.|
T Consensus 9 ~~~iglTGgigsGKStv~~~l~~-~g~~vi--daD~ia~~l~~~~~~~~~~i~~~f 61 (210)
T 4i1u_A 9 MYAIGLTGGIGSGKTTVADLFAA-RGASLV--DTDLIAHRITAPAGLAMPAIEQTF 61 (210)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH-TTCEEE--EHHHHHHHHTSTTCTTHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHH-CCCcEE--ECcHHHHHHhcCCcHHHHHHHHHh
Confidence 45799999999999999999987 997765 4444443322 23334444444
No 290
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=95.86 E-value=0.0036 Score=63.50 Aligned_cols=72 Identities=13% Similarity=0.151 Sum_probs=45.9
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHhCC--ceEEeeccc-cccc-----------ccCCcHHHHHHHHHHHHHhhhhcC
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQAMGI--EPVIMSAGE-LESE-----------RAGEPGKLIRERYRTASQVVQNQG 137 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~~g~--~~i~vs~~e-L~s~-----------~~GEsEr~iR~~F~~A~e~~~~~~ 137 (342)
+...+++|.||+|||||++.++++....- ..+.+.... +.-. -.+..+-.+++..+.+. +.
T Consensus 258 ~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~~~L-----R~ 332 (511)
T 2oap_1 258 EHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLRAAL-----RQ 332 (511)
T ss_dssp HTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHHTTG-----GG
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHHHhh-----cc
Confidence 34567999999999999999999987743 456665543 3210 01222223344443332 34
Q ss_pred CceEEEeeccc
Q 019334 138 KMSCLMINDID 148 (342)
Q Consensus 138 ~PcILfIDEID 148 (342)
.|.+|++.|+=
T Consensus 333 ~PD~iivgEir 343 (511)
T 2oap_1 333 RPDYIIVGEVR 343 (511)
T ss_dssp CCSEEEESCCC
T ss_pred CCCeEEeCCcC
Confidence 69999999984
No 291
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.85 E-value=0.0094 Score=56.22 Aligned_cols=41 Identities=24% Similarity=0.355 Sum_probs=29.8
Q ss_pred CCCCeEEEeecCCCCCHHHHHHHHHHHhCC--ceEEeeccccc
Q 019334 71 VKVPLILGIWGGKGQGKSFQTELIFQAMGI--EPVIMSAGELE 111 (342)
Q Consensus 71 ~k~PlglgL~GPPG~GKTllaravA~~~g~--~~i~vs~~eL~ 111 (342)
++.|..++|.||+|||||++++.+|..+.. --|.+.+.+++
T Consensus 97 ~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~ 139 (302)
T 3b9q_A 97 FRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTF 139 (302)
T ss_dssp SSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCS
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeeccc
Confidence 345678999999999999999999987521 23444555544
No 292
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.83 E-value=0.013 Score=55.99 Aligned_cols=40 Identities=18% Similarity=0.224 Sum_probs=29.4
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHhCC--ceEEeeccccc
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQAMGI--EPVIMSAGELE 111 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~~g~--~~i~vs~~eL~ 111 (342)
+.|..++|.||+|||||++++.+|..+.- -=|.+.+.+++
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~ 168 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTF 168 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeeccc
Confidence 45789999999999999999999976521 12444455544
No 293
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=95.79 E-value=0.03 Score=57.12 Aligned_cols=33 Identities=18% Similarity=0.319 Sum_probs=25.3
Q ss_pred EEEeecCCCCCHHHHHHHHHHHh-------CCceEEeecc
Q 019334 76 ILGIWGGKGQGKSFQTELIFQAM-------GIEPVIMSAG 108 (342)
Q Consensus 76 glgL~GPPG~GKTllaravA~~~-------g~~~i~vs~~ 108 (342)
.++|.|++|+|||.+.+++...+ .+.++.++..
T Consensus 169 HlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK 208 (512)
T 2ius_A 169 HLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPK 208 (512)
T ss_dssp SEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCS
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCc
Confidence 47899999999999999987533 3467776643
No 294
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=95.78 E-value=0.022 Score=61.97 Aligned_cols=75 Identities=23% Similarity=0.196 Sum_probs=40.9
Q ss_pred eEEEeecCCCCCHHHHHHHHH-----HHhCCce----EEeec-ccccccccCCcHHH-------HHHHHHHHHHhhhhcC
Q 019334 75 LILGIWGGKGQGKSFQTELIF-----QAMGIEP----VIMSA-GELESERAGEPGKL-------IRERYRTASQVVQNQG 137 (342)
Q Consensus 75 lglgL~GPPG~GKTllaravA-----~~~g~~~----i~vs~-~eL~s~~~GEsEr~-------iR~~F~~A~e~~~~~~ 137 (342)
.+++|.||.|+|||++.|.+| .+.|..+ ..+.. ..++. .+|-+... ..+.-+.|.-+ +...
T Consensus 663 ~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~~~~~d~i~~-~ig~~d~l~~~lStf~~e~~~~a~il-~~a~ 740 (934)
T 3thx_A 663 MFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEVSIVDCILA-RVGAGDSQLKGVSTFMAEMLETASIL-RSAT 740 (934)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEEEECCSEEEE-ECC---------CHHHHHHHHHHHHH-HHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHHhcCCccccccccchHHHHHHH-hcCchhhHHHhHhhhHHHHHHHHHHH-Hhcc
Confidence 568999999999999999995 3455421 11111 11221 12222211 12222233222 2246
Q ss_pred CceEEEeecccccC
Q 019334 138 KMSCLMINDIDAGL 151 (342)
Q Consensus 138 ~PcILfIDEIDAg~ 151 (342)
.|++|++||+=+|.
T Consensus 741 ~~sLlLLDEp~~Gl 754 (934)
T 3thx_A 741 KDSLIIIDELGRGT 754 (934)
T ss_dssp TTCEEEEESCSCSS
T ss_pred CCcEEEEeCCCCCC
Confidence 79999999987765
No 295
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=95.76 E-value=0.026 Score=58.01 Aligned_cols=27 Identities=22% Similarity=0.374 Sum_probs=23.0
Q ss_pred CCCCeEEEeecCCCCCHHHHHHHHHHHh
Q 019334 71 VKVPLILGIWGGKGQGKSFQTELIFQAM 98 (342)
Q Consensus 71 ~k~PlglgL~GPPG~GKTllaravA~~~ 98 (342)
+..|. ++|.||+|||||++.+++++..
T Consensus 43 l~lp~-iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 43 LALPA-IAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CCCCC-EECCCCTTSCHHHHHHHHHSCC
T ss_pred ccCCe-EEEECCCCChHHHHHHHHhCCC
Confidence 55666 8888999999999999999753
No 296
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=95.76 E-value=0.0063 Score=55.44 Aligned_cols=33 Identities=21% Similarity=0.333 Sum_probs=27.3
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHhCC----ceEE
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQAMGI----EPVI 104 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~~g~----~~i~ 104 (342)
..+..+.+.|++|||||++++.+++.++. +++.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~ 55 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVV 55 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeE
Confidence 45678888999999999999999987654 6655
No 297
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=95.74 E-value=0.04 Score=61.60 Aligned_cols=26 Identities=23% Similarity=0.388 Sum_probs=23.1
Q ss_pred eEEEeecCCCCCHHHHHHHHHHHhCC
Q 019334 75 LILGIWGGKGQGKSFQTELIFQAMGI 100 (342)
Q Consensus 75 lglgL~GPPG~GKTllaravA~~~g~ 100 (342)
..+.|.||.|||||++++++.+.+..
T Consensus 445 ~~vaivG~sGsGKSTll~ll~~~~~~ 470 (1321)
T 4f4c_A 445 QTVALVGSSGCGKSTIISLLLRYYDV 470 (1321)
T ss_dssp CEEEEEECSSSCHHHHHHHHTTSSCC
T ss_pred cEEEEEecCCCcHHHHHHHhcccccc
Confidence 35889999999999999999988765
No 298
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=95.74 E-value=0.039 Score=58.99 Aligned_cols=23 Identities=26% Similarity=0.040 Sum_probs=20.5
Q ss_pred eEEEeecCCCCCHHHHHHHHHHH
Q 019334 75 LILGIWGGKGQGKSFQTELIFQA 97 (342)
Q Consensus 75 lglgL~GPPG~GKTllaravA~~ 97 (342)
.+++|.||.|+|||++.|+++.-
T Consensus 608 ~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 608 RMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHHHHH
Confidence 47899999999999999999853
No 299
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=95.69 E-value=0.007 Score=50.89 Aligned_cols=26 Identities=31% Similarity=0.357 Sum_probs=23.1
Q ss_pred eEEEeecCCCCCHHHHHHHHHHHhCC
Q 019334 75 LILGIWGGKGQGKSFQTELIFQAMGI 100 (342)
Q Consensus 75 lglgL~GPPG~GKTllaravA~~~g~ 100 (342)
-..+|+||.|||||++.+||+.-++.
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~l~~ 52 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFVLGG 52 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHcC
Confidence 37889999999999999999988763
No 300
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=95.68 E-value=0.007 Score=57.73 Aligned_cols=29 Identities=17% Similarity=0.241 Sum_probs=24.8
Q ss_pred CCCCCeEEEeecCCCCCHHHHHHHHHHHh
Q 019334 70 NVKVPLILGIWGGKGQGKSFQTELIFQAM 98 (342)
Q Consensus 70 ~~k~PlglgL~GPPG~GKTllaravA~~~ 98 (342)
.++.-..++|.||+|||||++++++++-+
T Consensus 122 ~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 122 GIPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred EecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 34444679999999999999999999987
No 301
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.67 E-value=0.014 Score=57.73 Aligned_cols=26 Identities=27% Similarity=0.203 Sum_probs=23.2
Q ss_pred eEEEeecCCCCCHHHHHHHHHHHhCC
Q 019334 75 LILGIWGGKGQGKSFQTELIFQAMGI 100 (342)
Q Consensus 75 lglgL~GPPG~GKTllaravA~~~g~ 100 (342)
-.++|.||+|+|||++.++++....-
T Consensus 168 gii~I~GpnGSGKTTlL~allg~l~~ 193 (418)
T 1p9r_A 168 GIILVTGPTGSGKSTTLYAGLQELNS 193 (418)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHCC
T ss_pred CeEEEECCCCCCHHHHHHHHHhhcCC
Confidence 46899999999999999999998754
No 302
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.65 E-value=0.0074 Score=54.24 Aligned_cols=28 Identities=14% Similarity=0.127 Sum_probs=24.1
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHhC
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQAMG 99 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~~g 99 (342)
.....++|.||+|+|||++++++++...
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 3457899999999999999999999875
No 303
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.65 E-value=0.021 Score=55.55 Aligned_cols=41 Identities=24% Similarity=0.341 Sum_probs=30.1
Q ss_pred CCCCeEEEeecCCCCCHHHHHHHHHHHhC--CceEEeeccccc
Q 019334 71 VKVPLILGIWGGKGQGKSFQTELIFQAMG--IEPVIMSAGELE 111 (342)
Q Consensus 71 ~k~PlglgL~GPPG~GKTllaravA~~~g--~~~i~vs~~eL~ 111 (342)
++.|..++|.||+|||||++++.+|..+. ---|.+.+.+++
T Consensus 154 ~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~ 196 (359)
T 2og2_A 154 FRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTF 196 (359)
T ss_dssp SSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCS
T ss_pred cCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEeccccc
Confidence 34567899999999999999999998652 123445555554
No 304
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=95.62 E-value=0.014 Score=65.11 Aligned_cols=24 Identities=29% Similarity=0.331 Sum_probs=21.3
Q ss_pred EEEeecCCCCCHHHHHHHHHHHhC
Q 019334 76 ILGIWGGKGQGKSFQTELIFQAMG 99 (342)
Q Consensus 76 glgL~GPPG~GKTllaravA~~~g 99 (342)
-++|.||.|||||++++++++-..
T Consensus 1107 ~vaIVG~SGsGKSTL~~lL~rl~~ 1130 (1321)
T 4f4c_A 1107 TLALVGPSGCGKSTVVALLERFYD 1130 (1321)
T ss_dssp EEEEECSTTSSTTSHHHHHTTSSC
T ss_pred EEEEECCCCChHHHHHHHHhcCcc
Confidence 488999999999999999997654
No 305
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=95.55 E-value=0.0091 Score=56.46 Aligned_cols=39 Identities=18% Similarity=0.162 Sum_probs=29.0
Q ss_pred CCeEEEeecCCCCCHHHHHHHHHHHhCC--ceEEeeccccc
Q 019334 73 VPLILGIWGGKGQGKSFQTELIFQAMGI--EPVIMSAGELE 111 (342)
Q Consensus 73 ~PlglgL~GPPG~GKTllaravA~~~g~--~~i~vs~~eL~ 111 (342)
.|..++|.||+|||||++++.+|..+.. --+.+.+.+++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~ 141 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTF 141 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCS
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCC
Confidence 4678999999999999999999976532 23445555554
No 306
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=95.50 E-value=0.0067 Score=54.19 Aligned_cols=23 Identities=22% Similarity=0.170 Sum_probs=21.1
Q ss_pred eEEEeecCCCCCHHHHHHHHHHH
Q 019334 75 LILGIWGGKGQGKSFQTELIFQA 97 (342)
Q Consensus 75 lglgL~GPPG~GKTllaravA~~ 97 (342)
-.++|.||.|||||++.++++..
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 57899999999999999999975
No 307
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=95.50 E-value=0.059 Score=52.92 Aligned_cols=84 Identities=12% Similarity=0.103 Sum_probs=54.8
Q ss_pred ceEEEeecccccCCCCCCCcccchhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCC-------------CC
Q 019334 139 MSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGND-------------FS 205 (342)
Q Consensus 139 PcILfIDEIDAg~~r~~~t~~~v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr-------------~~ 205 (342)
|.|+||||+|..- ......|+..|.. + ..+++|++| |. +.
T Consensus 296 ~~VliIDEa~~l~------------~~a~~aLlk~lEe-------------~-~~~~~il~t-n~~~~~i~~~~~~~~~~ 348 (456)
T 2c9o_A 296 PGVLFVDEVHMLD------------IECFTYLHRALES-------------S-IAPIVIFAS-NRGNCVIRGTEDITSPH 348 (456)
T ss_dssp ECEEEEESGGGCB------------HHHHHHHHHHTTS-------------T-TCCEEEEEE-CCSEEECBTTSSCEEET
T ss_pred ceEEEEechhhcC------------HHHHHHHHHHhhc-------------c-CCCEEEEec-CCccccccccccccccc
Confidence 5799999999973 1234456665552 2 234655455 33 67
Q ss_pred CCccCCCCCCCCcceecC-CCHHHHHHHHHHHhhcC--CCCHHHHHHHh
Q 019334 206 TIYAPLIRDGRMEKFYWQ-PNLEDILNIVHRMYEKD--GITKDEVGSIV 251 (342)
Q Consensus 206 ~LdpaLlRpGRfD~~i~v-P~~~~R~~Il~~~~~~~--~~s~~di~~lv 251 (342)
.|+|.|+- |+-.+.+- |+.++..+||+...... .++.+.+..++
T Consensus 349 ~l~~~i~s--R~~~~~~~~~~~~e~~~iL~~~~~~~~~~~~~~~~~~i~ 395 (456)
T 2c9o_A 349 GIPLDLLD--RVMIIRTMLYTPQEMKQIIKIRAQTEGINISEEALNHLG 395 (456)
T ss_dssp TCCHHHHT--TEEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHH
T ss_pred cCChhHHh--hcceeeCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 78887776 77664443 79999999998776543 35666555554
No 308
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=95.49 E-value=0.007 Score=47.35 Aligned_cols=55 Identities=18% Similarity=0.083 Sum_probs=39.0
Q ss_pred CCCHHHHHHHHHHHhhcCCCC-HHHHHHHhhcCCCCccchHHHHHHHHHHHHHHHHHHHc
Q 019334 223 QPNLEDILNIVHRMYEKDGIT-KDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDI 281 (342)
Q Consensus 223 vP~~~~R~~Il~~~~~~~~~s-~~di~~lvd~f~~~~~df~gAlrs~~~~e~ir~w~~~~ 281 (342)
.||.++|.+||+.++++.+++ ..|++.|+.. +..|+||....++.++....+++.
T Consensus 10 ~Pd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~----T~G~SGADL~~l~~eAa~~alr~~ 65 (86)
T 2krk_A 10 HPNEEARLDILKIHSRKMNLTRGINLRKIAEL----MPGASGAEVKGVCTEAGMYALRER 65 (86)
T ss_dssp CCCHHHHHHHHHHHTTTSEECTTCCCHHHHHT----CSSCCHHHHHHHHHHHHHHHHHTT
T ss_pred CcCHHHHHHHHHHHHcCCCCCcccCHHHHHHH----cCCCCHHHHHHHHHHHHHHHHHHc
Confidence 499999999999999987553 3455555532 234677877788888876666554
No 309
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.49 E-value=0.039 Score=56.34 Aligned_cols=41 Identities=22% Similarity=0.362 Sum_probs=30.3
Q ss_pred CCCCeEEEeecCCCCCHHHHHHHHHHHhCC--ceEEeeccccc
Q 019334 71 VKVPLILGIWGGKGQGKSFQTELIFQAMGI--EPVIMSAGELE 111 (342)
Q Consensus 71 ~k~PlglgL~GPPG~GKTllaravA~~~g~--~~i~vs~~eL~ 111 (342)
++.+..++|.||+|||||++++.+|..+.. --|.+.+.+.+
T Consensus 290 i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~ 332 (503)
T 2yhs_A 290 GKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTF 332 (503)
T ss_dssp SCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTT
T ss_pred ccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCccc
Confidence 456789999999999999999999976521 23445555544
No 310
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=95.45 E-value=0.018 Score=56.52 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=21.3
Q ss_pred EEEeecCCCCCHHHHHHHHHHHh
Q 019334 76 ILGIWGGKGQGKSFQTELIFQAM 98 (342)
Q Consensus 76 glgL~GPPG~GKTllaravA~~~ 98 (342)
.++|.||||||||+++.++++.+
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 88999999999999999998776
No 311
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.42 E-value=0.013 Score=58.24 Aligned_cols=35 Identities=20% Similarity=0.422 Sum_probs=27.2
Q ss_pred CCeEEEeecCCCCCHHHHHHHHHHHh---CCceEEeec
Q 019334 73 VPLILGIWGGKGQGKSFQTELIFQAM---GIEPVIMSA 107 (342)
Q Consensus 73 ~PlglgL~GPPG~GKTllaravA~~~---g~~~i~vs~ 107 (342)
.|..+++.||||+|||+++..+|..+ |-.+..+++
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~ 135 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAA 135 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEec
Confidence 46789999999999999999998765 344555544
No 312
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=95.41 E-value=0.008 Score=61.68 Aligned_cols=32 Identities=28% Similarity=0.460 Sum_probs=20.9
Q ss_pred EEEeecCCCCCHHHH-HHHHHH--HhCCceEEeec
Q 019334 76 ILGIWGGKGQGKSFQ-TELIFQ--AMGIEPVIMSA 107 (342)
Q Consensus 76 glgL~GPPG~GKTll-aravA~--~~g~~~i~vs~ 107 (342)
..+|+||||||||.. +.+|+. +.|..++.++.
T Consensus 207 ~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~ 241 (646)
T 4b3f_X 207 LAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAP 241 (646)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcC
Confidence 578999999999964 444432 23555555554
No 313
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=95.38 E-value=0.0058 Score=54.87 Aligned_cols=27 Identities=22% Similarity=0.158 Sum_probs=22.8
Q ss_pred CCeEEEeecCCCCCHHHHHHHHHHHhC
Q 019334 73 VPLILGIWGGKGQGKSFQTELIFQAMG 99 (342)
Q Consensus 73 ~PlglgL~GPPG~GKTllaravA~~~g 99 (342)
.--.++|.||.|||||++.+++++-..
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 55 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGLLDA 55 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 345799999999999999999987543
No 314
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=95.36 E-value=0.0073 Score=55.10 Aligned_cols=28 Identities=29% Similarity=0.226 Sum_probs=24.4
Q ss_pred CCCCeEEEeecCCCCCHHHHHHHHHHHhC
Q 019334 71 VKVPLILGIWGGKGQGKSFQTELIFQAMG 99 (342)
Q Consensus 71 ~k~PlglgL~GPPG~GKTllaravA~~~g 99 (342)
++. -.++|.||.|||||++.+++++-..
T Consensus 22 i~~-e~~~liG~nGsGKSTLl~~l~Gl~~ 49 (240)
T 2onk_A 22 MGR-DYCVLLGPTGAGKSVFLELIAGIVK 49 (240)
T ss_dssp ECS-SEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred ECC-EEEEEECCCCCCHHHHHHHHhCCCC
Confidence 456 7899999999999999999997653
No 315
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.35 E-value=0.011 Score=51.50 Aligned_cols=27 Identities=19% Similarity=0.234 Sum_probs=22.4
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHh
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQAM 98 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~~ 98 (342)
+....++|.||+|+|||++++.++..+
T Consensus 4 ~~~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 4 TMIPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CcceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 345678999999999999999998763
No 316
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=95.31 E-value=0.0062 Score=56.19 Aligned_cols=28 Identities=18% Similarity=0.231 Sum_probs=25.3
Q ss_pred eEEEeecCCCCCHHHHHHHHHHHhCCce
Q 019334 75 LILGIWGGKGQGKSFQTELIFQAMGIEP 102 (342)
Q Consensus 75 lglgL~GPPG~GKTllaravA~~~g~~~ 102 (342)
.+++|.|+||||||+.++.++..+|++.
T Consensus 2 ~~i~ltG~~~sGK~tv~~~l~~~~g~~~ 29 (241)
T 1dek_A 2 KLIFLSGVKRSGKDTTADFIMSNYSAVK 29 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCeE
Confidence 4789999999999999999999999664
No 317
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=95.30 E-value=0.0094 Score=54.07 Aligned_cols=40 Identities=23% Similarity=0.305 Sum_probs=30.9
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHhCCc-eEEeeccccc
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQAMGIE-PVIMSAGELE 111 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~~g~~-~i~vs~~eL~ 111 (342)
.|+++++|.|-|||||++.|+.+.+.+|.. +..++.++.+
T Consensus 9 ~~~~II~itGk~~SGKd~va~~l~~~~g~~~~~vv~msD~i 49 (202)
T 3ch4_B 9 APRLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPL 49 (202)
T ss_dssp CCSEEEEEEECTTSSHHHHHHHHHHHHCTTTEEEECTHHHH
T ss_pred CCCEEEEEECCCCCChHHHHHHHHHHcCCCCceEEEccHHH
Confidence 467899999999999999999998888642 3345555433
No 318
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=95.29 E-value=0.015 Score=59.64 Aligned_cols=40 Identities=13% Similarity=0.062 Sum_probs=30.8
Q ss_pred CCCCeEEEeecCCCCCHHHHHHHHHHHhCC----ceEEeecccc
Q 019334 71 VKVPLILGIWGGKGQGKSFQTELIFQAMGI----EPVIMSAGEL 110 (342)
Q Consensus 71 ~k~PlglgL~GPPG~GKTllaravA~~~g~----~~i~vs~~eL 110 (342)
++.+..+.|.||+|||||++++++|+.++. .+..+++.++
T Consensus 366 ~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 366 ERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIV 409 (552)
T ss_dssp GGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHH
T ss_pred cccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHH
Confidence 345578999999999999999999999862 3334666555
No 319
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.24 E-value=0.027 Score=58.35 Aligned_cols=101 Identities=18% Similarity=0.225 Sum_probs=0.0
Q ss_pred EEEeecCCCCCHHHHHHHHHHHhCCceEEe--------------------------------------------------
Q 019334 76 ILGIWGGKGQGKSFQTELIFQAMGIEPVIM-------------------------------------------------- 105 (342)
Q Consensus 76 glgL~GPPG~GKTllaravA~~~g~~~i~v-------------------------------------------------- 105 (342)
.++|-||.|||||++.+++++...-.-=.+
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPV 184 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECCCTTTHHHHCSSSS
T ss_pred EEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhHHHHHhhhhhhchhhhhhhhhhhcchh
Q ss_pred -ecccccccccCCcHHHHHHHHHH------------------------HHHhhhhcCCceEEEeecccccCCCCCCCccc
Q 019334 106 -SAGELESERAGEPGKLIRERYRT------------------------ASQVVQNQGKMSCLMINDIDAGLGRFGNTQMT 160 (342)
Q Consensus 106 -s~~eL~s~~~GEsEr~iR~~F~~------------------------A~e~~~~~~~PcILfIDEIDAg~~r~~~t~~~ 160 (342)
...++......+..+.+.++.+. |+.++. .|.||++||-=+++ +
T Consensus 185 ~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~iAraL~~---~p~llllDEPts~L--------D 253 (608)
T 3j16_B 185 QKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQ---EADVYMFDEPSSYL--------D 253 (608)
T ss_dssp SHHHHHHHHHCCSCHHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHHHHHHHS---CCSEEEEECTTTTC--------C
T ss_pred hHHHHHHhhhhhhHHHHHHHHHHHcCCcchhCCChHHCCHHHHHHHHHHHHHHh---CCCEEEEECcccCC--------C
Q ss_pred chhHHHHHHHHhhcCCCCccccCccccccCCCCCccEEEeeCC
Q 019334 161 VNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRIPIIFTGND 203 (342)
Q Consensus 161 v~~q~V~~tLl~llD~p~~v~l~g~~~~~~~~~~V~VIatTNr 203 (342)
...+.....++..+- ..+.-||+.|.+
T Consensus 254 ~~~~~~l~~~l~~l~----------------~~g~tvi~vtHd 280 (608)
T 3j16_B 254 VKQRLNAAQIIRSLL----------------APTKYVICVEHD 280 (608)
T ss_dssp HHHHHHHHHHHHGGG----------------TTTCEEEEECSC
T ss_pred HHHHHHHHHHHHHHH----------------hCCCEEEEEeCC
No 320
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=95.23 E-value=0.0074 Score=54.64 Aligned_cols=28 Identities=29% Similarity=0.208 Sum_probs=23.3
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHhC
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQAMG 99 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~~g 99 (342)
..--.++|-||.|||||++.++++.-..
T Consensus 29 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 56 (235)
T 3tif_A 29 KEGEFVSIMGPSGSGKSTMLNIIGCLDK 56 (235)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 3345799999999999999999997553
No 321
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=95.19 E-value=0.0086 Score=61.04 Aligned_cols=29 Identities=3% Similarity=-0.086 Sum_probs=25.8
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHhCC
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQAMGI 100 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~~g~ 100 (342)
+.+..|.|-|++|||||++++++|++++.
T Consensus 393 ~~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 393 KQGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp GCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred ccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 34577889999999999999999999985
No 322
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=95.19 E-value=0.011 Score=52.58 Aligned_cols=34 Identities=18% Similarity=0.303 Sum_probs=29.5
Q ss_pred EEeecCCCCCHHHHHHHHHHHhCCceEEeeccccc
Q 019334 77 LGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELE 111 (342)
Q Consensus 77 lgL~GPPG~GKTllaravA~~~g~~~i~vs~~eL~ 111 (342)
++|.|++|+|||.+|+.+|.+ |.+.+.+..+.-.
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~~~ 35 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQIL 35 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCCC-
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCCCC
Confidence 789999999999999999988 8888888887644
No 323
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=95.19 E-value=0.0077 Score=54.59 Aligned_cols=27 Identities=22% Similarity=0.281 Sum_probs=23.1
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHh
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQAM 98 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~~ 98 (342)
+.--.++|.||.|||||++.+++++..
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 29 PEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 344579999999999999999998764
No 324
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=95.17 E-value=0.018 Score=55.24 Aligned_cols=71 Identities=14% Similarity=0.169 Sum_probs=43.9
Q ss_pred CeEEEeecCCCCCHHHHHHHHHHHhCC--ceEEeecc-ccccc-------cc-------CC-cHHHHHHHHHHHHHhhhh
Q 019334 74 PLILGIWGGKGQGKSFQTELIFQAMGI--EPVIMSAG-ELESE-------RA-------GE-PGKLIRERYRTASQVVQN 135 (342)
Q Consensus 74 PlglgL~GPPG~GKTllaravA~~~g~--~~i~vs~~-eL~s~-------~~-------GE-sEr~iR~~F~~A~e~~~~ 135 (342)
-..++|.||.|||||+++++++..+.. -.|.+... ++... ++ |. ..-.+++..+.|.
T Consensus 175 G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l----- 249 (361)
T 2gza_A 175 ERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCL----- 249 (361)
T ss_dssp TCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCCCTTCSSEEEEECC----------CCHHHHHHHHT-----
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccCccccCCEEEEeecCccccccccccCHHHHHHHHH-----
Confidence 357899999999999999999987653 34555432 22110 11 11 1223455555543
Q ss_pred cCCceEEEeecccc
Q 019334 136 QGKMSCLMINDIDA 149 (342)
Q Consensus 136 ~~~PcILfIDEIDA 149 (342)
...|.+++++|+..
T Consensus 250 ~~~pd~~l~~e~r~ 263 (361)
T 2gza_A 250 RMKPTRILLAELRG 263 (361)
T ss_dssp TSCCSEEEESCCCS
T ss_pred hcCCCEEEEcCchH
Confidence 34699999998753
No 325
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=95.16 E-value=0.008 Score=55.37 Aligned_cols=29 Identities=24% Similarity=0.215 Sum_probs=23.9
Q ss_pred CCCCeEEEeecCCCCCHHHHHHHHHHHhC
Q 019334 71 VKVPLILGIWGGKGQGKSFQTELIFQAMG 99 (342)
Q Consensus 71 ~k~PlglgL~GPPG~GKTllaravA~~~g 99 (342)
++.--.++|-||.|||||++.+++++-..
T Consensus 29 i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~ 57 (262)
T 1b0u_A 29 ARAGDVISIIGSSGSGKSTFLRCINFLEK 57 (262)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 34446799999999999999999987654
No 326
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=95.16 E-value=0.0079 Score=55.08 Aligned_cols=25 Identities=28% Similarity=0.251 Sum_probs=22.0
Q ss_pred eEEEeecCCCCCHHHHHHHHHHHhC
Q 019334 75 LILGIWGGKGQGKSFQTELIFQAMG 99 (342)
Q Consensus 75 lglgL~GPPG~GKTllaravA~~~g 99 (342)
-.++|.||.|||||++.+++++-..
T Consensus 34 e~~~liG~nGsGKSTLlk~l~Gl~~ 58 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITGFLK 58 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5799999999999999999987543
No 327
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=95.16 E-value=0.0083 Score=58.54 Aligned_cols=24 Identities=29% Similarity=0.195 Sum_probs=21.8
Q ss_pred eEEEeecCCCCCHHHHHHHHHHHh
Q 019334 75 LILGIWGGKGQGKSFQTELIFQAM 98 (342)
Q Consensus 75 lglgL~GPPG~GKTllaravA~~~ 98 (342)
-.++|-||.|||||++.+++|.-.
T Consensus 31 e~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCchHHHHHHHHhcCC
Confidence 578999999999999999999754
No 328
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=95.16 E-value=0.017 Score=52.15 Aligned_cols=35 Identities=17% Similarity=0.017 Sum_probs=27.6
Q ss_pred CCeEEEeecCCCCCHH-HHHHHHHH--HhCCceEEeec
Q 019334 73 VPLILGIWGGKGQGKS-FQTELIFQ--AMGIEPVIMSA 107 (342)
Q Consensus 73 ~PlglgL~GPPG~GKT-llaravA~--~~g~~~i~vs~ 107 (342)
.-.+..+|||.|+||| .|.+++.. .-+..++.+++
T Consensus 19 ~g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp 56 (195)
T 1w4r_A 19 RGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKY 56 (195)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEcc
Confidence 3478999999999999 88888764 45667777764
No 329
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=95.09 E-value=0.01 Score=54.13 Aligned_cols=25 Identities=20% Similarity=0.267 Sum_probs=22.1
Q ss_pred CCeEEEeecCCCCCHHHHHHHHHHH
Q 019334 73 VPLILGIWGGKGQGKSFQTELIFQA 97 (342)
Q Consensus 73 ~PlglgL~GPPG~GKTllaravA~~ 97 (342)
.--.++|.||.|||||++.+++++-
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3357999999999999999999975
No 330
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=95.07 E-value=0.01 Score=57.86 Aligned_cols=27 Identities=22% Similarity=0.156 Sum_probs=23.0
Q ss_pred CCeEEEeecCCCCCHHHHHHHHHHHhC
Q 019334 73 VPLILGIWGGKGQGKSFQTELIFQAMG 99 (342)
Q Consensus 73 ~PlglgL~GPPG~GKTllaravA~~~g 99 (342)
.--.++|.||.|||||++.+++|+-..
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (362)
T 2it1_A 28 DGEFMALLGPSGSGKSTLLYTIAGIYK 54 (362)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCCC
Confidence 335789999999999999999997653
No 331
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.06 E-value=0.0088 Score=54.19 Aligned_cols=27 Identities=22% Similarity=0.270 Sum_probs=22.9
Q ss_pred CCeEEEeecCCCCCHHHHHHHHHHHhC
Q 019334 73 VPLILGIWGGKGQGKSFQTELIFQAMG 99 (342)
Q Consensus 73 ~PlglgL~GPPG~GKTllaravA~~~g 99 (342)
.--.++|.||.|||||++.+++++-..
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 57 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAGLVR 57 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 335799999999999999999987643
No 332
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=95.05 E-value=0.014 Score=51.72 Aligned_cols=27 Identities=22% Similarity=0.182 Sum_probs=23.9
Q ss_pred CCCCeEEEeecCCCCCHHHHHHHHHHH
Q 019334 71 VKVPLILGIWGGKGQGKSFQTELIFQA 97 (342)
Q Consensus 71 ~k~PlglgL~GPPG~GKTllaravA~~ 97 (342)
.+.+..++|-||.|||||++++++++.
T Consensus 17 ~~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 17 GTQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp TCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhc
Confidence 345678999999999999999999987
No 333
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=95.04 E-value=0.011 Score=54.64 Aligned_cols=27 Identities=26% Similarity=0.278 Sum_probs=23.1
Q ss_pred CCCCeEEEeecCCCCCHHHHHHHHHHH
Q 019334 71 VKVPLILGIWGGKGQGKSFQTELIFQA 97 (342)
Q Consensus 71 ~k~PlglgL~GPPG~GKTllaravA~~ 97 (342)
++.--.++|.||.|||||++.+++++-
T Consensus 43 i~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 43 VHPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 344467999999999999999999985
No 334
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=95.04 E-value=0.01 Score=58.38 Aligned_cols=26 Identities=23% Similarity=0.121 Sum_probs=22.6
Q ss_pred CeEEEeecCCCCCHHHHHHHHHHHhC
Q 019334 74 PLILGIWGGKGQGKSFQTELIFQAMG 99 (342)
Q Consensus 74 PlglgL~GPPG~GKTllaravA~~~g 99 (342)
--.++|.||.|||||++.+++|+-..
T Consensus 29 Ge~~~llGpsGsGKSTLLr~iaGl~~ 54 (381)
T 3rlf_A 29 GEFVVFVGPSGCGKSTLLRMIAGLET 54 (381)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCEEEEEcCCCchHHHHHHHHHcCCC
Confidence 35789999999999999999997653
No 335
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=95.04 E-value=0.01 Score=57.91 Aligned_cols=26 Identities=19% Similarity=0.181 Sum_probs=22.5
Q ss_pred CeEEEeecCCCCCHHHHHHHHHHHhC
Q 019334 74 PLILGIWGGKGQGKSFQTELIFQAMG 99 (342)
Q Consensus 74 PlglgL~GPPG~GKTllaravA~~~g 99 (342)
--.++|.||.|||||++.+++|+-..
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (372)
T 1g29_1 29 GEFMILLGPSGCGKTTTLRMIAGLEE 54 (372)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred CCEEEEECCCCcHHHHHHHHHHcCCC
Confidence 35789999999999999999997653
No 336
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=95.03 E-value=0.01 Score=57.75 Aligned_cols=27 Identities=19% Similarity=0.210 Sum_probs=22.9
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHh
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQAM 98 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~~ 98 (342)
+.--.++|.||.|||||++.+++|+-.
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 27 KDGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 334578999999999999999999754
No 337
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=95.02 E-value=0.075 Score=58.27 Aligned_cols=21 Identities=19% Similarity=-0.035 Sum_probs=19.5
Q ss_pred eEEEeecCCCCCHHHHHHHHH
Q 019334 75 LILGIWGGKGQGKSFQTELIF 95 (342)
Q Consensus 75 lglgL~GPPG~GKTllaravA 95 (342)
.+++|.||.|+|||++.|.++
T Consensus 790 ~i~~ItGpNgsGKSTlLr~iG 810 (1022)
T 2o8b_B 790 YCVLVTGPNMGGKSTLMRQAG 810 (1022)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHHH
Confidence 689999999999999999984
No 338
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.01 E-value=0.016 Score=50.85 Aligned_cols=33 Identities=21% Similarity=0.108 Sum_probs=25.5
Q ss_pred CeEEEeecCCCCCHHHHHHHHHHHh---CCceEEee
Q 019334 74 PLILGIWGGKGQGKSFQTELIFQAM---GIEPVIMS 106 (342)
Q Consensus 74 PlglgL~GPPG~GKTllaravA~~~---g~~~i~vs 106 (342)
+..++|.||+|+|||++++.++..+ |..+-.+.
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik 39 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVK 39 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEE
Confidence 4678999999999999999998764 44444443
No 339
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=95.01 E-value=0.075 Score=48.07 Aligned_cols=23 Identities=13% Similarity=0.121 Sum_probs=20.2
Q ss_pred eEEEeecCCCCCHHHHHHHHHHH
Q 019334 75 LILGIWGGKGQGKSFQTELIFQA 97 (342)
Q Consensus 75 lglgL~GPPG~GKTllaravA~~ 97 (342)
.-++|.|+||||||++..++.+.
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 46788999999999999999754
No 340
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=95.01 E-value=0.011 Score=57.63 Aligned_cols=25 Identities=28% Similarity=0.387 Sum_probs=22.1
Q ss_pred eEEEeecCCCCCHHHHHHHHHHHhC
Q 019334 75 LILGIWGGKGQGKSFQTELIFQAMG 99 (342)
Q Consensus 75 lglgL~GPPG~GKTllaravA~~~g 99 (342)
-.++|.||.|||||++.+++|.-..
T Consensus 42 e~~~llGpnGsGKSTLLr~iaGl~~ 66 (355)
T 1z47_A 42 EMVGLLGPSGSGKTTILRLIAGLER 66 (355)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCC
Confidence 5789999999999999999997543
No 341
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=95.00 E-value=0.012 Score=55.95 Aligned_cols=27 Identities=22% Similarity=0.358 Sum_probs=24.4
Q ss_pred eEEEeecCCCCCHHHHHHHHHHHhCCc
Q 019334 75 LILGIWGGKGQGKSFQTELIFQAMGIE 101 (342)
Q Consensus 75 lglgL~GPPG~GKTllaravA~~~g~~ 101 (342)
..++|.||+|||||++++++++.....
T Consensus 171 ~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 171 KTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 478999999999999999999998754
No 342
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=94.99 E-value=0.011 Score=57.82 Aligned_cols=27 Identities=26% Similarity=0.218 Sum_probs=23.0
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHh
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQAM 98 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~~ 98 (342)
+.--.++|.||.|||||++.+++|+-.
T Consensus 35 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 35 KDGEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 334578999999999999999999754
No 343
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=94.96 E-value=0.014 Score=53.41 Aligned_cols=27 Identities=22% Similarity=0.320 Sum_probs=23.4
Q ss_pred CCeEEEeecCCCCCHHHHHHHHHHHhC
Q 019334 73 VPLILGIWGGKGQGKSFQTELIFQAMG 99 (342)
Q Consensus 73 ~PlglgL~GPPG~GKTllaravA~~~g 99 (342)
.+..+.|.||+|||||++++.++..++
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 357888999999999999999997763
No 344
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=94.92 E-value=0.038 Score=49.72 Aligned_cols=25 Identities=28% Similarity=0.248 Sum_probs=21.5
Q ss_pred CCeEEEeecCCCCCHHHHHHHHHHH
Q 019334 73 VPLILGIWGGKGQGKSFQTELIFQA 97 (342)
Q Consensus 73 ~PlglgL~GPPG~GKTllaravA~~ 97 (342)
.++-|+|-|+||+|||++..++...
T Consensus 20 ~~l~I~lvG~~g~GKSSlin~l~~~ 44 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSILGQ 44 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHTS
T ss_pred CceEEEEECCCCCcHHHHHHHHhCC
Confidence 4567889999999999999998754
No 345
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=94.91 E-value=0.034 Score=53.52 Aligned_cols=29 Identities=28% Similarity=0.415 Sum_probs=25.4
Q ss_pred CeEEEeecCCCCCHHHHHHHHHHHhCCce
Q 019334 74 PLILGIWGGKGQGKSFQTELIFQAMGIEP 102 (342)
Q Consensus 74 PlglgL~GPPG~GKTllaravA~~~g~~~ 102 (342)
--.++|.||+|||||++.+.+++......
T Consensus 71 Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~ 99 (347)
T 2obl_A 71 GQRIGIFAGSGVGKSTLLGMICNGASADI 99 (347)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHSCCSE
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCE
Confidence 35799999999999999999999987643
No 346
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=94.90 E-value=0.011 Score=59.52 Aligned_cols=23 Identities=17% Similarity=0.091 Sum_probs=20.2
Q ss_pred CeEEEeecCCCCCHHHHHHHHHH
Q 019334 74 PLILGIWGGKGQGKSFQTELIFQ 96 (342)
Q Consensus 74 PlglgL~GPPG~GKTllaravA~ 96 (342)
-.+.+++||||||||++....+.
T Consensus 161 ~~v~~I~G~aGsGKTt~I~~~~~ 183 (446)
T 3vkw_A 161 AKVVLVDGVPGCGKTKEILSRVN 183 (446)
T ss_dssp SEEEEEEECTTSCHHHHHHHHCC
T ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Confidence 36889999999999999988775
No 347
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=94.89 E-value=0.011 Score=53.27 Aligned_cols=26 Identities=23% Similarity=0.387 Sum_probs=22.8
Q ss_pred CeEEEeecCCCCCHHHHHHHHHHHhC
Q 019334 74 PLILGIWGGKGQGKSFQTELIFQAMG 99 (342)
Q Consensus 74 PlglgL~GPPG~GKTllaravA~~~g 99 (342)
--.++|.||.|||||++.+++++...
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGELE 59 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 35799999999999999999998654
No 348
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=94.85 E-value=0.011 Score=55.24 Aligned_cols=25 Identities=28% Similarity=0.320 Sum_probs=22.0
Q ss_pred CeEEEeecCCCCCHHHHHHHHHHHh
Q 019334 74 PLILGIWGGKGQGKSFQTELIFQAM 98 (342)
Q Consensus 74 PlglgL~GPPG~GKTllaravA~~~ 98 (342)
--.++|-||.|||||++.+++++-.
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCC
Confidence 3579999999999999999999755
No 349
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=94.85 E-value=0.011 Score=54.79 Aligned_cols=29 Identities=17% Similarity=0.164 Sum_probs=24.1
Q ss_pred CCCCeEEEeecCCCCCHHHHHHHHHHHhC
Q 019334 71 VKVPLILGIWGGKGQGKSFQTELIFQAMG 99 (342)
Q Consensus 71 ~k~PlglgL~GPPG~GKTllaravA~~~g 99 (342)
++.--.++|-||.|||||++.+++++-..
T Consensus 47 i~~Gei~~liG~NGsGKSTLlk~l~Gl~~ 75 (263)
T 2olj_A 47 IREGEVVVVIGPSGSGKSTFLRCLNLLED 75 (263)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EcCCCEEEEEcCCCCcHHHHHHHHHcCCC
Confidence 34446799999999999999999997653
No 350
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=94.82 E-value=0.012 Score=54.33 Aligned_cols=27 Identities=26% Similarity=0.319 Sum_probs=23.0
Q ss_pred CCeEEEeecCCCCCHHHHHHHHHHHhC
Q 019334 73 VPLILGIWGGKGQGKSFQTELIFQAMG 99 (342)
Q Consensus 73 ~PlglgL~GPPG~GKTllaravA~~~g 99 (342)
.--.++|-||.|||||++.+++++-..
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl~~ 62 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGYLS 62 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 335799999999999999999997653
No 351
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=94.80 E-value=0.009 Score=57.83 Aligned_cols=26 Identities=31% Similarity=0.277 Sum_probs=22.5
Q ss_pred CCeEEEeecCCCCCHHHHHHHHHHHh
Q 019334 73 VPLILGIWGGKGQGKSFQTELIFQAM 98 (342)
Q Consensus 73 ~PlglgL~GPPG~GKTllaravA~~~ 98 (342)
.--.++|.||.|||||++.+++|+-.
T Consensus 25 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 25 SGEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp TTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCccHHHHHHHHHcCC
Confidence 33578999999999999999999754
No 352
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=94.80 E-value=0.15 Score=48.19 Aligned_cols=26 Identities=31% Similarity=0.456 Sum_probs=21.3
Q ss_pred CCCCeEEEeecCCCCCHHHHHHHHHHH
Q 019334 71 VKVPLILGIWGGKGQGKSFQTELIFQA 97 (342)
Q Consensus 71 ~k~PlglgL~GPPG~GKTllaravA~~ 97 (342)
...| -|.|.|++|+|||++..++.+.
T Consensus 32 ~~lp-~I~vvG~~~sGKSSLln~l~g~ 57 (360)
T 3t34_A 32 DSLP-AIAVVGGQSSGKSSVLESIVGK 57 (360)
T ss_dssp CCCC-EEEEECBTTSSHHHHHHHHHTS
T ss_pred ccCC-EEEEECCCCCcHHHHHHHHhCC
Confidence 4667 5566699999999999999873
No 353
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=94.79 E-value=0.01 Score=53.41 Aligned_cols=26 Identities=19% Similarity=0.235 Sum_probs=22.4
Q ss_pred CeEEEeecCCCCCHHHHHHHHHHHhC
Q 019334 74 PLILGIWGGKGQGKSFQTELIFQAMG 99 (342)
Q Consensus 74 PlglgL~GPPG~GKTllaravA~~~g 99 (342)
--.++|.||.|||||++.+++++-..
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~Gl~~ 60 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTISTYLK 60 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 35789999999999999999997653
No 354
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=94.79 E-value=0.011 Score=53.85 Aligned_cols=28 Identities=39% Similarity=0.424 Sum_probs=23.4
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHhC
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQAMG 99 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~~g 99 (342)
+.--.++|-||.|||||++.+++++-..
T Consensus 33 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 60 (247)
T 2ff7_A 33 KQGEVIGIVGRSGSGKSTLTKLIQRFYI 60 (247)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3345799999999999999999987653
No 355
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=94.77 E-value=0.041 Score=48.87 Aligned_cols=31 Identities=13% Similarity=0.369 Sum_probs=24.9
Q ss_pred EEEeecCCCCCHHHHHHHHHHHh--CCceEEee
Q 019334 76 ILGIWGGKGQGKSFQTELIFQAM--GIEPVIMS 106 (342)
Q Consensus 76 glgL~GPPG~GKTllaravA~~~--g~~~i~vs 106 (342)
-+-|-|+.|||||++|+.+++.+ |.+++...
T Consensus 4 FI~~EG~dGsGKsTq~~~L~~~L~~~~~v~~~~ 36 (205)
T 4hlc_A 4 FITFEGPEGSGKTTVINEVYHRLVKDYDVIMTR 36 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTTTSCEEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHCCCCEEEee
Confidence 45678999999999999999988 55555544
No 356
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=94.72 E-value=0.012 Score=54.18 Aligned_cols=27 Identities=22% Similarity=0.235 Sum_probs=23.0
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHh
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQAM 98 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~~ 98 (342)
+.--.++|.||.|||||++.+++++-.
T Consensus 31 ~~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 31 NEGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 344579999999999999999999754
No 357
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=94.72 E-value=0.013 Score=53.03 Aligned_cols=28 Identities=25% Similarity=0.240 Sum_probs=23.6
Q ss_pred CCCCeEEEeecCCCCCHHHHHHHHHHHh
Q 019334 71 VKVPLILGIWGGKGQGKSFQTELIFQAM 98 (342)
Q Consensus 71 ~k~PlglgL~GPPG~GKTllaravA~~~ 98 (342)
++.--.++|.||.|||||++.+++++-.
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 25 AQPNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp ECTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3444679999999999999999999754
No 358
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=94.71 E-value=0.012 Score=54.82 Aligned_cols=27 Identities=15% Similarity=0.068 Sum_probs=22.9
Q ss_pred CCeEEEeecCCCCCHHHHHHHHHHHhC
Q 019334 73 VPLILGIWGGKGQGKSFQTELIFQAMG 99 (342)
Q Consensus 73 ~PlglgL~GPPG~GKTllaravA~~~g 99 (342)
.--.++|.||.|||||++.+++++...
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~~ 72 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAYEP 72 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 335799999999999999999997653
No 359
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.70 E-value=0.013 Score=54.09 Aligned_cols=28 Identities=25% Similarity=0.395 Sum_probs=23.4
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHhC
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQAMG 99 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~~g 99 (342)
..--.++|-||.|||||++.+++++-..
T Consensus 39 ~~Gei~~l~G~NGsGKSTLlk~l~Gl~~ 66 (256)
T 1vpl_A 39 EEGEIFGLIGPNGAGKTTTLRIISTLIK 66 (256)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3445799999999999999999997643
No 360
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=94.69 E-value=0.013 Score=53.83 Aligned_cols=26 Identities=27% Similarity=0.227 Sum_probs=22.5
Q ss_pred CeEEEeecCCCCCHHHHHHHHHHHhC
Q 019334 74 PLILGIWGGKGQGKSFQTELIFQAMG 99 (342)
Q Consensus 74 PlglgL~GPPG~GKTllaravA~~~g 99 (342)
--.++|.||.|||||++.+++++-..
T Consensus 26 Ge~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 35799999999999999999987653
No 361
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=94.66 E-value=0.023 Score=54.08 Aligned_cols=28 Identities=25% Similarity=0.292 Sum_probs=24.4
Q ss_pred CCCCeEEEeecCCCCCHHHHHHHHHHHh
Q 019334 71 VKVPLILGIWGGKGQGKSFQTELIFQAM 98 (342)
Q Consensus 71 ~k~PlglgL~GPPG~GKTllaravA~~~ 98 (342)
++....++|.||||+|||++.++++..+
T Consensus 52 ~~~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 52 TGRAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp CCCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 4566789999999999999999999754
No 362
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=94.65 E-value=0.013 Score=54.30 Aligned_cols=29 Identities=21% Similarity=0.240 Sum_probs=24.0
Q ss_pred CCCCeEEEeecCCCCCHHHHHHHHHHHhC
Q 019334 71 VKVPLILGIWGGKGQGKSFQTELIFQAMG 99 (342)
Q Consensus 71 ~k~PlglgL~GPPG~GKTllaravA~~~g 99 (342)
++.--.++|.||.|||||++.+++++-..
T Consensus 42 i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~ 70 (271)
T 2ixe_A 42 LYPGKVTALVGPNGSGKSTVAALLQNLYQ 70 (271)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 34446799999999999999999997653
No 363
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.65 E-value=0.027 Score=46.31 Aligned_cols=35 Identities=20% Similarity=0.165 Sum_probs=25.7
Q ss_pred HHHHHHhhcCCCCCeEEEeecCCCCCHHHHHHHHH
Q 019334 61 VKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELIF 95 (342)
Q Consensus 61 ~K~~l~~~~~~k~PlglgL~GPPG~GKTllaravA 95 (342)
+++.+....+.+.+.-++|.|+||+|||++...+.
T Consensus 5 ~~~~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 5 FSSMFDKLWGSNKELRILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp HHHHHGGGTTCSSCEEEEEEEETTSSHHHHHHHTC
T ss_pred HHHHHHHhcCCCCccEEEEECCCCCCHHHHHHHHh
Confidence 33344434433567788899999999999999887
No 364
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=94.61 E-value=0.013 Score=53.65 Aligned_cols=27 Identities=30% Similarity=0.375 Sum_probs=23.1
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHh
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQAM 98 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~~ 98 (342)
+.--.++|.||.|||||++.+++++-.
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 29 NKGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp ETTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 334579999999999999999999765
No 365
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=94.59 E-value=0.019 Score=48.70 Aligned_cols=24 Identities=21% Similarity=0.183 Sum_probs=21.2
Q ss_pred CeEEEeecCCCCCHHHHHHHHHHH
Q 019334 74 PLILGIWGGKGQGKSFQTELIFQA 97 (342)
Q Consensus 74 PlglgL~GPPG~GKTllaravA~~ 97 (342)
..-++|.||+|+|||++.++++..
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 356889999999999999999976
No 366
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=94.58 E-value=0.0086 Score=57.95 Aligned_cols=26 Identities=27% Similarity=0.258 Sum_probs=22.5
Q ss_pred CCeEEEeecCCCCCHHHHHHHHHHHh
Q 019334 73 VPLILGIWGGKGQGKSFQTELIFQAM 98 (342)
Q Consensus 73 ~PlglgL~GPPG~GKTllaravA~~~ 98 (342)
.--.++|.||.|||||++.+++|+-.
T Consensus 30 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 30 NGERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 33579999999999999999999754
No 367
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=94.55 E-value=0.015 Score=57.20 Aligned_cols=26 Identities=23% Similarity=0.321 Sum_probs=22.3
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHH
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQA 97 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~ 97 (342)
+.--.++|-||.|||||++.+++|+-
T Consensus 45 ~~Ge~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 45 SPGQRVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCChHHHHHHHHhCC
Confidence 33467999999999999999999964
No 368
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=94.49 E-value=0.02 Score=58.71 Aligned_cols=23 Identities=26% Similarity=0.358 Sum_probs=18.7
Q ss_pred EEEeecCCCCCHHHHHHHHHHHh
Q 019334 76 ILGIWGGKGQGKSFQTELIFQAM 98 (342)
Q Consensus 76 glgL~GPPG~GKTllaravA~~~ 98 (342)
..+|+||||||||+++..++..+
T Consensus 197 ~~li~GppGTGKT~~~~~~i~~l 219 (624)
T 2gk6_A 197 LSLIQGPPGTGKTVTSATIVYHL 219 (624)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999877666543
No 369
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=94.48 E-value=0.29 Score=44.03 Aligned_cols=26 Identities=19% Similarity=0.252 Sum_probs=22.5
Q ss_pred CCeEEEeecCCCCCHHHHHHHHHHHh
Q 019334 73 VPLILGIWGGKGQGKSFQTELIFQAM 98 (342)
Q Consensus 73 ~PlglgL~GPPG~GKTllaravA~~~ 98 (342)
.+.-|+|.|++|+|||++..++...-
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45778899999999999999998754
No 370
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=94.48 E-value=0.015 Score=53.42 Aligned_cols=28 Identities=21% Similarity=0.357 Sum_probs=23.6
Q ss_pred CCCCeEEEeecCCCCCHHHHHHHHHHHh
Q 019334 71 VKVPLILGIWGGKGQGKSFQTELIFQAM 98 (342)
Q Consensus 71 ~k~PlglgL~GPPG~GKTllaravA~~~ 98 (342)
++.--.++|.||.|||||++.++++.-.
T Consensus 43 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 43 IPSGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 3444679999999999999999999764
No 371
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=94.47 E-value=0.066 Score=54.90 Aligned_cols=29 Identities=21% Similarity=0.206 Sum_probs=24.7
Q ss_pred EEeecCCCCCHHHH-HHHHHHHhCCceEEe
Q 019334 77 LGIWGGKGQGKSFQ-TELIFQAMGIEPVIM 105 (342)
Q Consensus 77 lgL~GPPG~GKTll-aravA~~~g~~~i~v 105 (342)
++|.|++|+|||.+ ...|++..+..+++|
T Consensus 178 ~~I~g~~g~GKT~Lal~~I~~~~~~dv~~V 207 (515)
T 2r9v_A 178 ELIIGDRQTGKTAIAIDTIINQKGQGVYCI 207 (515)
T ss_dssp EEEEEETTSSHHHHHHHHHHTTTTTTEEEE
T ss_pred EEEEcCCCCCccHHHHHHHHHhhcCCcEEE
Confidence 78999999999999 579999988776544
No 372
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=94.46 E-value=0.02 Score=48.63 Aligned_cols=24 Identities=21% Similarity=0.187 Sum_probs=21.5
Q ss_pred eEEEeecCCCCCHHHHHHHHHHHh
Q 019334 75 LILGIWGGKGQGKSFQTELIFQAM 98 (342)
Q Consensus 75 lglgL~GPPG~GKTllaravA~~~ 98 (342)
.-++|-||+|+|||++.+.++...
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 568899999999999999999764
No 373
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=94.44 E-value=0.075 Score=54.30 Aligned_cols=29 Identities=21% Similarity=0.296 Sum_probs=24.8
Q ss_pred EEeecCCCCCHHHH-HHHHHHHhCCceEEe
Q 019334 77 LGIWGGKGQGKSFQ-TELIFQAMGIEPVIM 105 (342)
Q Consensus 77 lgL~GPPG~GKTll-aravA~~~g~~~i~v 105 (342)
++|.|++|+|||.+ ...|++..+..+++|
T Consensus 165 ~~Ifg~~g~GKT~Lal~~I~~~~~~dv~~V 194 (502)
T 2qe7_A 165 ELIIGDRQTGKTTIAIDTIINQKGQDVICI 194 (502)
T ss_dssp CEEEECSSSCHHHHHHHHHHGGGSCSEEEE
T ss_pred EEEECCCCCCchHHHHHHHHHhhcCCcEEE
Confidence 78999999999999 579999988776544
No 374
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=94.42 E-value=0.13 Score=43.42 Aligned_cols=23 Identities=17% Similarity=0.072 Sum_probs=19.9
Q ss_pred CeEEEeecCCCCCHHHHHHHHHH
Q 019334 74 PLILGIWGGKGQGKSFQTELIFQ 96 (342)
Q Consensus 74 PlglgL~GPPG~GKTllaravA~ 96 (342)
+.-++|.|+||+|||++.++++.
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 45678889999999999999987
No 375
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=94.40 E-value=0.052 Score=57.44 Aligned_cols=23 Identities=26% Similarity=0.281 Sum_probs=19.3
Q ss_pred eEEEeecCCCCCHHHHHHHHHHH
Q 019334 75 LILGIWGGKGQGKSFQTELIFQA 97 (342)
Q Consensus 75 lglgL~GPPG~GKTllaravA~~ 97 (342)
..++|.||+|||||+++.+++.+
T Consensus 110 ~~vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 110 QIMVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999987777654
No 376
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=94.35 E-value=0.1 Score=55.46 Aligned_cols=74 Identities=15% Similarity=0.133 Sum_probs=41.3
Q ss_pred EEEeecCCCCCHHHHHHHHHHH-----hCCce----EEeec-cccccc-------ccCCcHHHHHHHHHHHHHhhhhcCC
Q 019334 76 ILGIWGGKGQGKSFQTELIFQA-----MGIEP----VIMSA-GELESE-------RAGEPGKLIRERYRTASQVVQNQGK 138 (342)
Q Consensus 76 glgL~GPPG~GKTllaravA~~-----~g~~~----i~vs~-~eL~s~-------~~GEsEr~iR~~F~~A~e~~~~~~~ 138 (342)
.++|.||.|+|||++.|.++.- .|..+ ..+.. ..++.. ..|.|.- .+++.+.|.-. .....
T Consensus 578 i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~vpa~~~~i~~v~~i~~~~~~~d~l~~g~S~~-~~e~~~la~il-~~a~~ 655 (765)
T 1ewq_A 578 LVLITGPNMAGKSTFLRQTALIALLAQVGSFVPAEEAHLPLFDGIYTRIGASDDLAGGKSTF-MVEMEEVALIL-KEATE 655 (765)
T ss_dssp EEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCSEEEEECCC------CCSHH-HHHHHHHHHHH-HHCCT
T ss_pred EEEEECCCCCChHHHHHHHHhhhhhcccCceeehhccceeeHHHhhccCCHHHHHHhcccHH-HHHHHHHHHHH-HhccC
Confidence 6899999999999999999853 34211 00000 111111 1233322 23344333322 22468
Q ss_pred ceEEEeecccccC
Q 019334 139 MSCLMINDIDAGL 151 (342)
Q Consensus 139 PcILfIDEIDAg~ 151 (342)
|++|++||+=+|.
T Consensus 656 p~LlLLDEpgrGT 668 (765)
T 1ewq_A 656 NSLVLLDEVGRGT 668 (765)
T ss_dssp TEEEEEESTTTTS
T ss_pred CCEEEEECCCCCC
Confidence 9999999986654
No 377
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=94.33 E-value=0.013 Score=50.93 Aligned_cols=37 Identities=24% Similarity=0.202 Sum_probs=25.2
Q ss_pred eEEEeecCCCCCHHHHHHHHHHHhC-----CceEEeeccccc
Q 019334 75 LILGIWGGKGQGKSFQTELIFQAMG-----IEPVIMSAGELE 111 (342)
Q Consensus 75 lglgL~GPPG~GKTllaravA~~~g-----~~~i~vs~~eL~ 111 (342)
..++|.||+|||||+++++++..+. .-.|.+++.++.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~ 44 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDF 44 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccc
Confidence 4688999999999999999998764 234556555543
No 378
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=94.33 E-value=0.026 Score=50.71 Aligned_cols=25 Identities=20% Similarity=0.352 Sum_probs=21.9
Q ss_pred CeEEEeecCCCCCHHHHHHHHHHHh
Q 019334 74 PLILGIWGGKGQGKSFQTELIFQAM 98 (342)
Q Consensus 74 PlglgL~GPPG~GKTllaravA~~~ 98 (342)
.+.+.+-||+|||||++++.+++.+
T Consensus 3 g~~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3567789999999999999999876
No 379
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=94.30 E-value=0.018 Score=53.40 Aligned_cols=25 Identities=24% Similarity=0.187 Sum_probs=22.4
Q ss_pred CeEEEeecCCCCCHHHHHHHHHHHh
Q 019334 74 PLILGIWGGKGQGKSFQTELIFQAM 98 (342)
Q Consensus 74 PlglgL~GPPG~GKTllaravA~~~ 98 (342)
--.++|.||.|||||++.++++...
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 4568999999999999999999875
No 380
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=94.29 E-value=0.15 Score=51.13 Aligned_cols=73 Identities=8% Similarity=-0.012 Sum_probs=45.4
Q ss_pred EEEeecCCCCCHHHHHHHHHHH-----hCCceEEeecc---------------cccccccCCcHH-HHHHHHHHHH---H
Q 019334 76 ILGIWGGKGQGKSFQTELIFQA-----MGIEPVIMSAG---------------ELESERAGEPGK-LIRERYRTAS---Q 131 (342)
Q Consensus 76 glgL~GPPG~GKTllaravA~~-----~g~~~i~vs~~---------------eL~s~~~GEsEr-~iR~~F~~A~---e 131 (342)
-++|.||||||||.++..+|+. .++.+|.+-.+ .++..-.-+|.- .++-.| .|. |
T Consensus 177 R~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~~V~~lIGER~~EV~d~~~~~~G~VV~atadep~~~r~~~a~-~altiAE 255 (427)
T 3l0o_A 177 RGMIVAPPKAGKTTILKEIANGIAENHPDTIRIILLIDERPEEVTDIRESTNAIVIAAPFDMPPDKQVKVAE-LTLEMAK 255 (427)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHHHHCTTSEEEEEECSCCHHHHSSSSSSCCSEEEECCTTSCHHHHHHHHH-HHHHHHH
T ss_pred eEEEecCCCCChhHHHHHHHHHHhhcCCCeEEEEEEeccCcchHHHHHHHhCCeEEEECCCCCHHHHHHHHH-HHHHHHH
Confidence 4788999999999999988875 35554443332 333333444433 333333 222 2
Q ss_pred hhhhcCCceEEEeecccc
Q 019334 132 VVQNQGKMSCLMINDIDA 149 (342)
Q Consensus 132 ~~~~~~~PcILfIDEIDA 149 (342)
..+..|+-.+|++|+|=.
T Consensus 256 yfrd~G~dVLil~DslTR 273 (427)
T 3l0o_A 256 RLVEFNYDVVILLDSLTR 273 (427)
T ss_dssp HHHHTTCEEEEEEECHHH
T ss_pred HHHHcCCCEEEecccchH
Confidence 233468999999999875
No 381
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=94.25 E-value=0.035 Score=55.16 Aligned_cols=32 Identities=22% Similarity=0.335 Sum_probs=26.4
Q ss_pred CCCCeEEEeecCCCCCHHHHHHHHHHHhCCce
Q 019334 71 VKVPLILGIWGGKGQGKSFQTELIFQAMGIEP 102 (342)
Q Consensus 71 ~k~PlglgL~GPPG~GKTllaravA~~~g~~~ 102 (342)
+..--.++|.||+|||||++.+++|+......
T Consensus 154 i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~ 185 (438)
T 2dpy_A 154 VGRGQRMGLFAGSGVGKSVLLGMMARYTRADV 185 (438)
T ss_dssp CBTTCEEEEEECTTSSHHHHHHHHHHHSCCSE
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHhcccCCCe
Confidence 33335799999999999999999999987643
No 382
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=94.24 E-value=0.023 Score=52.60 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=21.0
Q ss_pred EEEeecCCCCCHHHHHHHHHHHh
Q 019334 76 ILGIWGGKGQGKSFQTELIFQAM 98 (342)
Q Consensus 76 glgL~GPPG~GKTllaravA~~~ 98 (342)
.++|-||+|+|||++.+++++..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999865
No 383
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=94.23 E-value=0.063 Score=41.74 Aligned_cols=53 Identities=15% Similarity=-0.038 Sum_probs=38.2
Q ss_pred CHHHHHHHHHHHhhcCCCC-HHHHHHHhhcCCCCccchHHHHHHHHHHHHHHHHHHHc
Q 019334 225 NLEDILNIVHRMYEKDGIT-KDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWIDDI 281 (342)
Q Consensus 225 ~~~~R~~Il~~~~~~~~~s-~~di~~lvd~f~~~~~df~gAlrs~~~~e~ir~w~~~~ 281 (342)
|.++|.+||+.++++.+++ ..|++.|+. .+-.|+||....++.++....+++.
T Consensus 2 d~~~R~~Il~~~~~~~~~~~dvdl~~lA~----~t~G~SGADl~~l~~eAa~~a~r~~ 55 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMSVERGIRWELISR----LCPNSTGAELRSVCTEAGMFAIRAR 55 (88)
T ss_dssp CSSHHHHHHHHHHTTSCBCSCCCHHHHHH----TCSSCCHHHHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHCCCCCCCccCHHHHHH----HcCCCcHHHHHHHHHHHHHHHHHhc
Confidence 5689999999999987764 456666664 2335678888888888876666653
No 384
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=94.19 E-value=0.15 Score=45.27 Aligned_cols=26 Identities=27% Similarity=0.310 Sum_probs=22.1
Q ss_pred CCeEEEeecCCCCCHHHHHHHHHHHh
Q 019334 73 VPLILGIWGGKGQGKSFQTELIFQAM 98 (342)
Q Consensus 73 ~PlglgL~GPPG~GKTllaravA~~~ 98 (342)
.+.-|+|.|+||+|||++..++...-
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTSC
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCC
Confidence 45678899999999999999998543
No 385
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=94.16 E-value=0.032 Score=44.77 Aligned_cols=25 Identities=20% Similarity=0.227 Sum_probs=21.4
Q ss_pred CCeEEEeecCCCCCHHHHHHHHHHH
Q 019334 73 VPLILGIWGGKGQGKSFQTELIFQA 97 (342)
Q Consensus 73 ~PlglgL~GPPG~GKTllaravA~~ 97 (342)
.+.-++|.|++|+|||+++.++...
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcC
Confidence 3456888899999999999999864
No 386
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.10 E-value=0.067 Score=45.86 Aligned_cols=27 Identities=26% Similarity=0.469 Sum_probs=23.0
Q ss_pred CCeEEEeecCCCCCHHHHHHHHHHHhC
Q 019334 73 VPLILGIWGGKGQGKSFQTELIFQAMG 99 (342)
Q Consensus 73 ~PlglgL~GPPG~GKTllaravA~~~g 99 (342)
.+..+.|.|+||+|||+++..++..+.
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 456777889999999999999998864
No 387
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=94.09 E-value=0.11 Score=51.67 Aligned_cols=34 Identities=18% Similarity=0.241 Sum_probs=26.7
Q ss_pred CCeEEEeecCCCCCHHHHHHHHHHHh---CCceEEee
Q 019334 73 VPLILGIWGGKGQGKSFQTELIFQAM---GIEPVIMS 106 (342)
Q Consensus 73 ~PlglgL~GPPG~GKTllaravA~~~---g~~~i~vs 106 (342)
.|..+++.||+|+|||+++..+|..+ |-.+..++
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd 133 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVA 133 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEee
Confidence 57788899999999999999999655 44555444
No 388
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=94.04 E-value=0.024 Score=55.47 Aligned_cols=26 Identities=27% Similarity=0.311 Sum_probs=22.5
Q ss_pred CCeEEEeecCCCCCHHHHHHHHHHHh
Q 019334 73 VPLILGIWGGKGQGKSFQTELIFQAM 98 (342)
Q Consensus 73 ~PlglgL~GPPG~GKTllaravA~~~ 98 (342)
.--.++|-||.|||||++.++++.-.
T Consensus 53 ~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 53 AGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 33579999999999999999999754
No 389
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=94.03 E-value=0.071 Score=54.54 Aligned_cols=29 Identities=24% Similarity=0.320 Sum_probs=24.3
Q ss_pred EEeecCCCCCHHHH-HHHHHHHhCCceEEe
Q 019334 77 LGIWGGKGQGKSFQ-TELIFQAMGIEPVIM 105 (342)
Q Consensus 77 lgL~GPPG~GKTll-aravA~~~g~~~i~v 105 (342)
++|.|++|+|||.+ ...|++..+..+++|
T Consensus 166 ~~Ifg~~g~GKT~Lal~~I~~~~~~dv~~V 195 (507)
T 1fx0_A 166 ELIIGDRQTGKTAVATDTILNQQGQNVICV 195 (507)
T ss_dssp CBEEESSSSSHHHHHHHHHHTCCTTTCEEE
T ss_pred EEEecCCCCCccHHHHHHHHHhhcCCcEEE
Confidence 78999999999999 579999887765544
No 390
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=94.00 E-value=0.039 Score=55.20 Aligned_cols=28 Identities=18% Similarity=0.065 Sum_probs=22.8
Q ss_pred CCCCeEEEeecCCCCCHHHHHHHHHHHh
Q 019334 71 VKVPLILGIWGGKGQGKSFQTELIFQAM 98 (342)
Q Consensus 71 ~k~PlglgL~GPPG~GKTllaravA~~~ 98 (342)
++.-..++|-||.|||||+++|++++-.
T Consensus 135 i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 135 NFEGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SSSCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 3444568888999999999999999753
No 391
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=93.95 E-value=0.018 Score=48.89 Aligned_cols=28 Identities=14% Similarity=0.128 Sum_probs=22.7
Q ss_pred CCCCeEEEeecCCCCCHHHHHHHHHHHh
Q 019334 71 VKVPLILGIWGGKGQGKSFQTELIFQAM 98 (342)
Q Consensus 71 ~k~PlglgL~GPPG~GKTllaravA~~~ 98 (342)
+.....++|.||+|+|||++.+++++..
T Consensus 23 ~~~~~~v~lvG~~g~GKSTLl~~l~g~~ 50 (210)
T 1pui_A 23 SDTGIEVAFAGRSNAGKSSALNTLTNQK 50 (210)
T ss_dssp CSCSEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4555679999999999999999987543
No 392
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=93.95 E-value=0.029 Score=56.15 Aligned_cols=36 Identities=14% Similarity=0.177 Sum_probs=26.5
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHh---CCceEEeec
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQAM---GIEPVIMSA 107 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~~---g~~~i~vs~ 107 (342)
..--.++|.||||||||++++.+|... |-..+.++.
T Consensus 279 ~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ 317 (525)
T 1tf7_A 279 FKDSIILATGATGTGKTLLVSRFVENACANKERAILFAY 317 (525)
T ss_dssp ESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEES
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 333579999999999999999999654 334444443
No 393
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=93.93 E-value=0.021 Score=53.71 Aligned_cols=25 Identities=24% Similarity=0.413 Sum_probs=22.2
Q ss_pred CeEEEeecCCCCCHHHHHHHHHHHh
Q 019334 74 PLILGIWGGKGQGKSFQTELIFQAM 98 (342)
Q Consensus 74 PlglgL~GPPG~GKTllaravA~~~ 98 (342)
--.++|.||.|||||++.+++++..
T Consensus 64 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 64 GQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp TCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3579999999999999999999765
No 394
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=93.90 E-value=0.072 Score=46.99 Aligned_cols=35 Identities=17% Similarity=0.192 Sum_probs=27.9
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHh--CCceEEee
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQAM--GIEPVIMS 106 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~~--g~~~i~vs 106 (342)
+.+.++.+.|.+|+|||+++..+|..+ |-.+..++
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd 48 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVN 48 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEE
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEe
Confidence 456788999999999999999999765 55555554
No 395
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=93.89 E-value=0.063 Score=47.17 Aligned_cols=32 Identities=28% Similarity=0.374 Sum_probs=26.0
Q ss_pred EEeecCCCCCHHHHHHHHHHHh---CCceEEeecc
Q 019334 77 LGIWGGKGQGKSFQTELIFQAM---GIEPVIMSAG 108 (342)
Q Consensus 77 lgL~GPPG~GKTllaravA~~~---g~~~i~vs~~ 108 (342)
+-+-|+-|||||++++.+++.+ |.+++...-+
T Consensus 3 I~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~treP 37 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKREP 37 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECC
Confidence 5578999999999999999765 7777766544
No 396
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=93.87 E-value=0.08 Score=53.62 Aligned_cols=24 Identities=17% Similarity=0.170 Sum_probs=22.3
Q ss_pred EEeecCCCCCHHHHHHHHHHHhCC
Q 019334 77 LGIWGGKGQGKSFQTELIFQAMGI 100 (342)
Q Consensus 77 lgL~GPPG~GKTllaravA~~~g~ 100 (342)
++|.|++|+|||.+...+|+...+
T Consensus 155 ~~Ifgg~G~GKt~Ll~~Ia~~~~~ 178 (469)
T 2c61_A 155 LPIFSASGLPHNEIALQIARQASV 178 (469)
T ss_dssp CCEEECTTSCHHHHHHHHHHHCBC
T ss_pred EEEECCCCCCHHHHHHHHHHHHhh
Confidence 678899999999999999999987
No 397
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=93.84 E-value=0.045 Score=49.17 Aligned_cols=29 Identities=24% Similarity=0.166 Sum_probs=24.4
Q ss_pred eEEEeecCCCCCHHHHHHHHHHHhCCceEE
Q 019334 75 LILGIWGGKGQGKSFQTELIFQAMGIEPVI 104 (342)
Q Consensus 75 lglgL~GPPG~GKTllaravA~~~g~~~i~ 104 (342)
.+++|.||+|+|||++|.++... |..++.
T Consensus 17 ~gvli~G~SGaGKStlal~L~~r-G~~lva 45 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALIDR-GHQLVC 45 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHT-TCEEEE
T ss_pred EEEEEEcCCCCCHHHHHHHHHHc-CCeEec
Confidence 68999999999999999998874 765544
No 398
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=93.84 E-value=0.097 Score=44.98 Aligned_cols=26 Identities=19% Similarity=0.381 Sum_probs=21.2
Q ss_pred CCeEEEeecCCCCCHHHHHHHHHHHh
Q 019334 73 VPLILGIWGGKGQGKSFQTELIFQAM 98 (342)
Q Consensus 73 ~PlglgL~GPPG~GKTllaravA~~~ 98 (342)
.+..+.|.|++|+|||+++..++...
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 34556666999999999999999875
No 399
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=93.82 E-value=0.046 Score=45.52 Aligned_cols=27 Identities=19% Similarity=0.112 Sum_probs=22.4
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHh
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQAM 98 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~~ 98 (342)
..+.-++|.|++|+|||+++.+++...
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 344578888999999999999998754
No 400
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=93.81 E-value=0.041 Score=44.73 Aligned_cols=26 Identities=27% Similarity=0.221 Sum_probs=21.5
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHH
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQA 97 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~ 97 (342)
+.+.-++|.|++|+|||+++..+...
T Consensus 6 ~~~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 6 KNILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhC
Confidence 34567889999999999999998864
No 401
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=93.80 E-value=0.038 Score=44.14 Aligned_cols=23 Identities=22% Similarity=0.147 Sum_probs=19.5
Q ss_pred EEEeecCCCCCHHHHHHHHHHHh
Q 019334 76 ILGIWGGKGQGKSFQTELIFQAM 98 (342)
Q Consensus 76 glgL~GPPG~GKTllaravA~~~ 98 (342)
-++|.|++|+|||+++..++...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 36777999999999999998653
No 402
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=93.78 E-value=0.035 Score=44.05 Aligned_cols=24 Identities=33% Similarity=0.299 Sum_probs=20.6
Q ss_pred eEEEeecCCCCCHHHHHHHHHHHh
Q 019334 75 LILGIWGGKGQGKSFQTELIFQAM 98 (342)
Q Consensus 75 lglgL~GPPG~GKTllaravA~~~ 98 (342)
.-+++.|++|+|||+++.+++...
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHhCc
Confidence 457889999999999999998653
No 403
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=93.77 E-value=0.042 Score=46.13 Aligned_cols=25 Identities=32% Similarity=0.304 Sum_probs=21.6
Q ss_pred CeEEEeecCCCCCHHHHHHHHHHHh
Q 019334 74 PLILGIWGGKGQGKSFQTELIFQAM 98 (342)
Q Consensus 74 PlglgL~GPPG~GKTllaravA~~~ 98 (342)
|-..+|+||.|+|||++.+|+.--+
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4577899999999999999998654
No 404
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.76 E-value=0.046 Score=46.69 Aligned_cols=26 Identities=19% Similarity=0.115 Sum_probs=22.0
Q ss_pred CCeEEEeecCCCCCHHHHHHHHHHHh
Q 019334 73 VPLILGIWGGKGQGKSFQTELIFQAM 98 (342)
Q Consensus 73 ~PlglgL~GPPG~GKTllaravA~~~ 98 (342)
.+.-++|.|+||+|||+++.+++...
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34567888999999999999999765
No 405
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=93.76 E-value=0.043 Score=43.77 Aligned_cols=24 Identities=25% Similarity=0.123 Sum_probs=20.9
Q ss_pred CeEEEeecCCCCCHHHHHHHHHHH
Q 019334 74 PLILGIWGGKGQGKSFQTELIFQA 97 (342)
Q Consensus 74 PlglgL~GPPG~GKTllaravA~~ 97 (342)
+.-+++.|++|+|||+++.++...
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 356888999999999999999865
No 406
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=93.74 E-value=0.044 Score=43.64 Aligned_cols=25 Identities=24% Similarity=0.234 Sum_probs=21.0
Q ss_pred CeEEEeecCCCCCHHHHHHHHHHHh
Q 019334 74 PLILGIWGGKGQGKSFQTELIFQAM 98 (342)
Q Consensus 74 PlglgL~GPPG~GKTllaravA~~~ 98 (342)
+.-++|.|+||+|||+++.++....
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCC
Confidence 3568889999999999999988643
No 407
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=93.63 E-value=0.11 Score=53.28 Aligned_cols=29 Identities=17% Similarity=0.132 Sum_probs=24.0
Q ss_pred EEeecCCCCCHHHHH-HHHHHHhCCceEEe
Q 019334 77 LGIWGGKGQGKSFQT-ELIFQAMGIEPVIM 105 (342)
Q Consensus 77 lgL~GPPG~GKTlla-ravA~~~g~~~i~v 105 (342)
++|.|++|||||.++ .++++..+..+++|
T Consensus 165 ~~Ifg~~g~GKT~l~l~~I~n~~~~dv~~V 194 (513)
T 3oaa_A 165 ELIIGDRQTGKTALAIDAIINQRDSGIKCI 194 (513)
T ss_dssp CEEEESSSSSHHHHHHHHHHTTSSSSCEEE
T ss_pred EEeecCCCCCcchHHHHHHHhhccCCceEE
Confidence 789999999999995 89998877776543
No 408
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=93.62 E-value=0.23 Score=48.67 Aligned_cols=22 Identities=27% Similarity=0.206 Sum_probs=18.8
Q ss_pred eEEEeecCCCCCHHHHHHHHHH
Q 019334 75 LILGIWGGKGQGKSFQTELIFQ 96 (342)
Q Consensus 75 lglgL~GPPG~GKTllaravA~ 96 (342)
..|.|.|+||+|||+|..++.+
T Consensus 24 ~~V~lvG~~nvGKSTL~n~l~~ 45 (456)
T 4dcu_A 24 PVVAIVGRPNVGKSTIFNRIAG 45 (456)
T ss_dssp CEEEEECSSSSSHHHHHHHHEE
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 3577789999999999999864
No 409
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=93.60 E-value=0.058 Score=43.50 Aligned_cols=26 Identities=19% Similarity=0.118 Sum_probs=21.9
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHH
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQA 97 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~ 97 (342)
+.+.-++|.|++|+|||++..++...
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcC
Confidence 34567889999999999999999764
No 410
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=93.60 E-value=0.056 Score=44.35 Aligned_cols=26 Identities=19% Similarity=0.091 Sum_probs=22.4
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHH
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQA 97 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~ 97 (342)
+.+.-|+|.|++|+|||+++.++...
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhC
Confidence 34567889999999999999999876
No 411
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=93.59 E-value=0.088 Score=50.23 Aligned_cols=25 Identities=28% Similarity=0.377 Sum_probs=22.2
Q ss_pred CeEEEeecCCCCCHHHHHHHHHHHh
Q 019334 74 PLILGIWGGKGQGKSFQTELIFQAM 98 (342)
Q Consensus 74 PlglgL~GPPG~GKTllaravA~~~ 98 (342)
...++|.||||+|||++..++++..
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 5678999999999999999999754
No 412
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=93.58 E-value=0.048 Score=44.18 Aligned_cols=24 Identities=21% Similarity=0.225 Sum_probs=20.5
Q ss_pred CeEEEeecCCCCCHHHHHHHHHHH
Q 019334 74 PLILGIWGGKGQGKSFQTELIFQA 97 (342)
Q Consensus 74 PlglgL~GPPG~GKTllaravA~~ 97 (342)
+.-|+|.|+||+|||+++.++...
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEEECCCCccHHHHHHHHhcC
Confidence 456888899999999999998743
No 413
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=93.54 E-value=0.15 Score=46.45 Aligned_cols=23 Identities=13% Similarity=0.085 Sum_probs=20.1
Q ss_pred CeEEEeecCCCCCHHHHHHHHHH
Q 019334 74 PLILGIWGGKGQGKSFQTELIFQ 96 (342)
Q Consensus 74 PlglgL~GPPG~GKTllaravA~ 96 (342)
+.-++|.|+||||||++..++.+
T Consensus 5 ~~kI~lvG~~nvGKTsL~n~l~g 27 (258)
T 3a1s_A 5 MVKVALAGCPNVGKTSLFNALTG 27 (258)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHC
Confidence 35678889999999999999975
No 414
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=93.53 E-value=0.052 Score=47.12 Aligned_cols=19 Identities=21% Similarity=0.296 Sum_probs=15.2
Q ss_pred eEEEeecCCCCCHHHHHHH
Q 019334 75 LILGIWGGKGQGKSFQTEL 93 (342)
Q Consensus 75 lglgL~GPPG~GKTllara 93 (342)
.-+++.+|.|+|||+.+-.
T Consensus 58 ~~~l~~apTGsGKT~~~~l 76 (228)
T 3iuy_A 58 IDLIVVAQTGTGKTLSYLM 76 (228)
T ss_dssp CCEEEECCTTSCHHHHHHH
T ss_pred CCEEEECCCCChHHHHHHH
Confidence 3578999999999986543
No 415
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=93.50 E-value=0.034 Score=46.57 Aligned_cols=21 Identities=29% Similarity=0.412 Sum_probs=18.9
Q ss_pred EEEeecCCCCCHHHHHHHHHH
Q 019334 76 ILGIWGGKGQGKSFQTELIFQ 96 (342)
Q Consensus 76 glgL~GPPG~GKTllaravA~ 96 (342)
-+.|-|+||||||++.+.++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 477889999999999999986
No 416
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.48 E-value=0.056 Score=45.45 Aligned_cols=26 Identities=27% Similarity=0.365 Sum_probs=21.9
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHH
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQA 97 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~ 97 (342)
+.+.-|+|.|++|+|||+++..+...
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 44567889999999999999999865
No 417
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=93.46 E-value=0.047 Score=43.87 Aligned_cols=25 Identities=24% Similarity=0.222 Sum_probs=21.5
Q ss_pred CeEEEeecCCCCCHHHHHHHHHHHh
Q 019334 74 PLILGIWGGKGQGKSFQTELIFQAM 98 (342)
Q Consensus 74 PlglgL~GPPG~GKTllaravA~~~ 98 (342)
+.-++|.|++|+|||++++++....
T Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 6 ELKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCC
Confidence 3568889999999999999998764
No 418
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.46 E-value=0.042 Score=44.02 Aligned_cols=24 Identities=21% Similarity=0.116 Sum_probs=20.5
Q ss_pred eEEEeecCCCCCHHHHHHHHHHHh
Q 019334 75 LILGIWGGKGQGKSFQTELIFQAM 98 (342)
Q Consensus 75 lglgL~GPPG~GKTllaravA~~~ 98 (342)
.-++|.|++|+|||++..++....
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 457889999999999999988653
No 419
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=93.44 E-value=0.043 Score=45.14 Aligned_cols=23 Identities=17% Similarity=0.174 Sum_probs=20.1
Q ss_pred eEEEeecCCCCCHHHHHHHHHHH
Q 019334 75 LILGIWGGKGQGKSFQTELIFQA 97 (342)
Q Consensus 75 lglgL~GPPG~GKTllaravA~~ 97 (342)
.-++|-|+||+|||++.+++++.
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 45788899999999999999863
No 420
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=93.40 E-value=0.012 Score=53.59 Aligned_cols=25 Identities=28% Similarity=0.372 Sum_probs=21.4
Q ss_pred EEEeecCCCCCHHHHHHHHHHHhCC
Q 019334 76 ILGIWGGKGQGKSFQTELIFQAMGI 100 (342)
Q Consensus 76 glgL~GPPG~GKTllaravA~~~g~ 100 (342)
.++|.||.|||||++.++++.-+..
T Consensus 29 ~~~i~GpnGsGKSTll~~i~g~~~~ 53 (227)
T 1qhl_A 29 VTTLSGGNGAGKSTTMAAFVTALIP 53 (227)
T ss_dssp HHHHHSCCSHHHHHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhccccc
Confidence 3468899999999999999987753
No 421
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=93.39 E-value=0.049 Score=45.06 Aligned_cols=23 Identities=17% Similarity=0.174 Sum_probs=20.5
Q ss_pred eEEEeecCCCCCHHHHHHHHHHH
Q 019334 75 LILGIWGGKGQGKSFQTELIFQA 97 (342)
Q Consensus 75 lglgL~GPPG~GKTllaravA~~ 97 (342)
.-++|.|++|+|||++.++++..
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 56888899999999999999863
No 422
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=93.38 E-value=0.049 Score=44.35 Aligned_cols=24 Identities=21% Similarity=0.176 Sum_probs=20.7
Q ss_pred CeEEEeecCCCCCHHHHHHHHHHH
Q 019334 74 PLILGIWGGKGQGKSFQTELIFQA 97 (342)
Q Consensus 74 PlglgL~GPPG~GKTllaravA~~ 97 (342)
+.-++|.|+||+|||+++.++...
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 356888999999999999999854
No 423
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=93.34 E-value=0.086 Score=49.93 Aligned_cols=28 Identities=32% Similarity=0.294 Sum_probs=24.0
Q ss_pred CCCCeEEEeecCCCCCHHHHHHHHHHHh
Q 019334 71 VKVPLILGIWGGKGQGKSFQTELIFQAM 98 (342)
Q Consensus 71 ~k~PlglgL~GPPG~GKTllaravA~~~ 98 (342)
...+..++|.||||+|||+++.+++..+
T Consensus 53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 53 CGNTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred cCCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3556788999999999999999998764
No 424
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=93.33 E-value=0.05 Score=43.83 Aligned_cols=25 Identities=12% Similarity=0.040 Sum_probs=21.4
Q ss_pred CCeEEEeecCCCCCHHHHHHHHHHH
Q 019334 73 VPLILGIWGGKGQGKSFQTELIFQA 97 (342)
Q Consensus 73 ~PlglgL~GPPG~GKTllaravA~~ 97 (342)
.+.-++|.|++|+|||++..++...
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 3456889999999999999999865
No 425
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=93.24 E-value=0.057 Score=44.67 Aligned_cols=27 Identities=19% Similarity=0.046 Sum_probs=22.3
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHh
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQAM 98 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~~ 98 (342)
+.+.-++|.|+||+|||+++..+...-
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 456778899999999999999988543
No 426
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=93.24 E-value=0.054 Score=43.54 Aligned_cols=24 Identities=21% Similarity=0.225 Sum_probs=20.5
Q ss_pred CeEEEeecCCCCCHHHHHHHHHHH
Q 019334 74 PLILGIWGGKGQGKSFQTELIFQA 97 (342)
Q Consensus 74 PlglgL~GPPG~GKTllaravA~~ 97 (342)
+.-++|.|+||+|||+++.++...
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 356888999999999999998854
No 427
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=93.24 E-value=0.14 Score=52.50 Aligned_cols=23 Identities=22% Similarity=0.203 Sum_probs=19.3
Q ss_pred EEeecCCCCCHHHH-HHHHHHHhC
Q 019334 77 LGIWGGKGQGKSFQ-TELIFQAMG 99 (342)
Q Consensus 77 lgL~GPPG~GKTll-aravA~~~g 99 (342)
++|.|++|+|||.+ ...|+++.+
T Consensus 165 ~~I~g~~g~GKT~Lal~~I~~q~~ 188 (510)
T 2ck3_A 165 ELIIGDRQTGKTSIAIDTIINQKR 188 (510)
T ss_dssp CEEEESTTSSHHHHHHHHHHHTHH
T ss_pred EEEecCCCCCchHHHHHHHHHHHh
Confidence 78999999999999 567776665
No 428
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=93.23 E-value=0.053 Score=43.44 Aligned_cols=24 Identities=21% Similarity=0.184 Sum_probs=20.7
Q ss_pred CeEEEeecCCCCCHHHHHHHHHHH
Q 019334 74 PLILGIWGGKGQGKSFQTELIFQA 97 (342)
Q Consensus 74 PlglgL~GPPG~GKTllaravA~~ 97 (342)
+.-++|.|++|+|||+++.++...
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHcC
Confidence 356888999999999999999863
No 429
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=93.20 E-value=0.054 Score=44.10 Aligned_cols=25 Identities=24% Similarity=0.230 Sum_probs=20.9
Q ss_pred CCeEEEeecCCCCCHHHHHHHHHHH
Q 019334 73 VPLILGIWGGKGQGKSFQTELIFQA 97 (342)
Q Consensus 73 ~PlglgL~GPPG~GKTllaravA~~ 97 (342)
.+.-++|.|+||+|||+++.++...
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGG
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhC
Confidence 3456889999999999999998743
No 430
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=93.18 E-value=0.048 Score=58.16 Aligned_cols=23 Identities=26% Similarity=0.358 Sum_probs=18.6
Q ss_pred EEEeecCCCCCHHHHHHHHHHHh
Q 019334 76 ILGIWGGKGQGKSFQTELIFQAM 98 (342)
Q Consensus 76 glgL~GPPG~GKTllaravA~~~ 98 (342)
..+|+||||||||+++..++..+
T Consensus 373 ~~lI~GppGTGKT~ti~~~i~~l 395 (800)
T 2wjy_A 373 LSLIQGPPGTGKTVTSATIVYHL 395 (800)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999998877666543
No 431
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=93.15 E-value=0.053 Score=43.53 Aligned_cols=22 Identities=23% Similarity=0.348 Sum_probs=19.6
Q ss_pred eEEEeecCCCCCHHHHHHHHHH
Q 019334 75 LILGIWGGKGQGKSFQTELIFQ 96 (342)
Q Consensus 75 lglgL~GPPG~GKTllaravA~ 96 (342)
.-|+|.|++|+|||++..++..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 4578899999999999999986
No 432
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=93.14 E-value=0.067 Score=43.54 Aligned_cols=24 Identities=25% Similarity=0.343 Sum_probs=20.4
Q ss_pred CCeEEEeecCCCCCHHHHHHHHHH
Q 019334 73 VPLILGIWGGKGQGKSFQTELIFQ 96 (342)
Q Consensus 73 ~PlglgL~GPPG~GKTllaravA~ 96 (342)
.+.-|+|.|++|+|||++..++..
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 445677889999999999999875
No 433
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=93.13 E-value=0.059 Score=44.17 Aligned_cols=26 Identities=15% Similarity=0.075 Sum_probs=22.0
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHH
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQA 97 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~ 97 (342)
+.+.-|+|.|++|+|||+++.++...
T Consensus 9 ~~~~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 9 DYLIKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhcC
Confidence 34467889999999999999999863
No 434
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=93.13 E-value=0.056 Score=43.29 Aligned_cols=23 Identities=35% Similarity=0.341 Sum_probs=20.2
Q ss_pred eEEEeecCCCCCHHHHHHHHHHH
Q 019334 75 LILGIWGGKGQGKSFQTELIFQA 97 (342)
Q Consensus 75 lglgL~GPPG~GKTllaravA~~ 97 (342)
.-++|.|+||+|||+++.++...
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45788899999999999999864
No 435
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=93.11 E-value=0.2 Score=46.16 Aligned_cols=23 Identities=22% Similarity=0.247 Sum_probs=20.1
Q ss_pred eEEEeecCCCCCHHHHHHHHHHH
Q 019334 75 LILGIWGGKGQGKSFQTELIFQA 97 (342)
Q Consensus 75 lglgL~GPPG~GKTllaravA~~ 97 (342)
.-+.|.|+||||||++..++.+.
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHCC
Confidence 45788899999999999999864
No 436
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=93.07 E-value=0.061 Score=43.19 Aligned_cols=21 Identities=14% Similarity=0.015 Sum_probs=18.9
Q ss_pred EEeecCCCCCHHHHHHHHHHH
Q 019334 77 LGIWGGKGQGKSFQTELIFQA 97 (342)
Q Consensus 77 lgL~GPPG~GKTllaravA~~ 97 (342)
++|.|++|+|||+++..+...
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 678899999999999999864
No 437
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=93.06 E-value=0.1 Score=39.60 Aligned_cols=51 Identities=12% Similarity=0.008 Sum_probs=37.0
Q ss_pred CHHHHHHHHHHHhhcCCCC-HHHHHHHhhcCCCCccchHHHHHHHHHHHHHHHHHH
Q 019334 225 NLEDILNIVHRMYEKDGIT-KDEVGSIVKTFPNQALDFYGALRSRTYDRSISKWID 279 (342)
Q Consensus 225 ~~~~R~~Il~~~~~~~~~s-~~di~~lvd~f~~~~~df~gAlrs~~~~e~ir~w~~ 279 (342)
|.++|.+||+.++++.+++ ..|++.|+.. +..|+||.-..++.++....++
T Consensus 2 d~~~R~~Il~~~l~~~~~~~~vdl~~la~~----t~G~SGADi~~l~~eA~~~a~~ 53 (83)
T 3aji_B 2 DRRQKRLIFSTITSKMNLSEEVDLEDYVAR----PDKISGADINSICQESGMLAVR 53 (83)
T ss_dssp CHHHHHHHHHHHHTTSCBCTTCCTHHHHTS----SCCCCHHHHHHHHHHHHHGGGT
T ss_pred CHHHHHHHHHHHhCCCCCCcccCHHHHHHH----cCCCCHHHHHHHHHHHHHHHHH
Confidence 6789999999999987754 4566777643 3457788888888887654443
No 438
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=93.00 E-value=0.53 Score=42.71 Aligned_cols=23 Identities=26% Similarity=0.200 Sum_probs=19.7
Q ss_pred EEEeecCCCCCHHHHHHHHHHHh
Q 019334 76 ILGIWGGKGQGKSFQTELIFQAM 98 (342)
Q Consensus 76 glgL~GPPG~GKTllaravA~~~ 98 (342)
-|+|.|+||+|||++..++.+.-
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 46777999999999999998653
No 439
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=92.97 E-value=0.29 Score=47.68 Aligned_cols=22 Identities=27% Similarity=0.241 Sum_probs=18.8
Q ss_pred EEEeecCCCCCHHHHHHHHHHH
Q 019334 76 ILGIWGGKGQGKSFQTELIFQA 97 (342)
Q Consensus 76 glgL~GPPG~GKTllaravA~~ 97 (342)
-|.|-|+||+|||++...+++.
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~ 26 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGE 26 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4677899999999999998754
No 440
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=92.96 E-value=0.061 Score=54.49 Aligned_cols=28 Identities=29% Similarity=0.357 Sum_probs=24.5
Q ss_pred CCCCeEEEeecCCCCCHHHHHHHHHHHhC
Q 019334 71 VKVPLILGIWGGKGQGKSFQTELIFQAMG 99 (342)
Q Consensus 71 ~k~PlglgL~GPPG~GKTllaravA~~~g 99 (342)
++. -.++|.||.|||||++.++++.-..
T Consensus 27 i~~-e~~~liG~nGsGKSTLl~~l~Gl~~ 54 (483)
T 3euj_A 27 FDE-LVTTLSGGNGAGKSTTMAGFVTALI 54 (483)
T ss_dssp CCS-SEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred Ecc-ceEEEECCCCCcHHHHHHHHhcCCC
Confidence 444 7999999999999999999998764
No 441
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=92.90 E-value=0.059 Score=43.51 Aligned_cols=20 Identities=25% Similarity=0.167 Sum_probs=17.9
Q ss_pred EEEeecCCCCCHHHHHHHHH
Q 019334 76 ILGIWGGKGQGKSFQTELIF 95 (342)
Q Consensus 76 glgL~GPPG~GKTllaravA 95 (342)
-++|.|+||+|||+++..+.
T Consensus 4 ki~ivG~~~~GKSsli~~l~ 23 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFG 23 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 46788999999999999986
No 442
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=92.90 E-value=0.069 Score=43.57 Aligned_cols=25 Identities=24% Similarity=0.092 Sum_probs=21.3
Q ss_pred CeEEEeecCCCCCHHHHHHHHHHHh
Q 019334 74 PLILGIWGGKGQGKSFQTELIFQAM 98 (342)
Q Consensus 74 PlglgL~GPPG~GKTllaravA~~~ 98 (342)
+.-|+|.|++|+|||+++.+++..-
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCC
Confidence 3578899999999999999998643
No 443
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=92.86 E-value=0.059 Score=43.68 Aligned_cols=23 Identities=17% Similarity=0.172 Sum_probs=20.1
Q ss_pred eEEEeecCCCCCHHHHHHHHHHH
Q 019334 75 LILGIWGGKGQGKSFQTELIFQA 97 (342)
Q Consensus 75 lglgL~GPPG~GKTllaravA~~ 97 (342)
.-++|.|++|+|||+++.++...
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 56788899999999999999854
No 444
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=92.84 E-value=0.34 Score=43.33 Aligned_cols=34 Identities=12% Similarity=0.282 Sum_probs=27.9
Q ss_pred eEEEeecCCCCCHHHHHHHHHHHhCCceEEeecc
Q 019334 75 LILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAG 108 (342)
Q Consensus 75 lglgL~GPPG~GKTllaravA~~~g~~~i~vs~~ 108 (342)
..+++.+|+|+|||+.+-+.+.+.+...+.+...
T Consensus 32 ~~~lv~~~TGsGKT~~~~~~~~~~~~~~liv~P~ 65 (337)
T 2z0m_A 32 KNVVVRAKTGSGKTAAYAIPILELGMKSLVVTPT 65 (337)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHTCCEEEECSS
T ss_pred CCEEEEcCCCCcHHHHHHHHHHhhcCCEEEEeCC
Confidence 3588999999999999888888878777776654
No 445
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=92.75 E-value=0.068 Score=43.31 Aligned_cols=25 Identities=24% Similarity=0.151 Sum_probs=21.5
Q ss_pred CeEEEeecCCCCCHHHHHHHHHHHh
Q 019334 74 PLILGIWGGKGQGKSFQTELIFQAM 98 (342)
Q Consensus 74 PlglgL~GPPG~GKTllaravA~~~ 98 (342)
..-++|.|++|+|||+++.++....
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC
Confidence 3568889999999999999998654
No 446
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=92.74 E-value=0.072 Score=46.77 Aligned_cols=27 Identities=30% Similarity=0.210 Sum_probs=23.3
Q ss_pred CeEEEeecCCCCCHHHHHHHHHHHhCC
Q 019334 74 PLILGIWGGKGQGKSFQTELIFQAMGI 100 (342)
Q Consensus 74 PlglgL~GPPG~GKTllaravA~~~g~ 100 (342)
|-..+|+||.|+|||++..||.--++-
T Consensus 23 ~~~~~I~G~NgsGKStil~ai~~~l~g 49 (203)
T 3qks_A 23 EGINLIIGQNGSGKSSLLDAILVGLYW 49 (203)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 467889999999999999999876664
No 447
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=92.74 E-value=0.06 Score=43.70 Aligned_cols=24 Identities=29% Similarity=0.144 Sum_probs=20.4
Q ss_pred CCeEEEeecCCCCCHHHHHHHHHH
Q 019334 73 VPLILGIWGGKGQGKSFQTELIFQ 96 (342)
Q Consensus 73 ~PlglgL~GPPG~GKTllaravA~ 96 (342)
.+.-|+|.|+||+|||+++.++..
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCS
T ss_pred cceEEEEECCCCCCHHHHHHHHhc
Confidence 345688899999999999999864
No 448
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=92.73 E-value=0.031 Score=53.10 Aligned_cols=28 Identities=29% Similarity=0.348 Sum_probs=23.6
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHhC
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQAMG 99 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~~g 99 (342)
+.--.++|.||.|||||++++++++-..
T Consensus 78 ~~Ge~vaivG~sGsGKSTLl~ll~gl~~ 105 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTILRLLFRFYD 105 (306)
T ss_dssp CTTCEEEEESSSCHHHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcCCC
Confidence 3446799999999999999999997654
No 449
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=92.70 E-value=0.069 Score=44.46 Aligned_cols=26 Identities=15% Similarity=0.151 Sum_probs=21.6
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHH
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQA 97 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~ 97 (342)
+.+.-++|.|+||+|||+++..++..
T Consensus 5 ~~~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 5 NVKCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEEEECCCCCCHHHHHHHHhcC
Confidence 34466888999999999999999875
No 450
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=92.69 E-value=0.056 Score=43.49 Aligned_cols=21 Identities=24% Similarity=0.251 Sum_probs=18.3
Q ss_pred EEEeecCCCCCHHHHHHHHHH
Q 019334 76 ILGIWGGKGQGKSFQTELIFQ 96 (342)
Q Consensus 76 glgL~GPPG~GKTllaravA~ 96 (342)
-++|.|+||+|||++++++.+
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 477889999999999999863
No 451
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=92.64 E-value=0.066 Score=44.11 Aligned_cols=25 Identities=16% Similarity=0.274 Sum_probs=21.4
Q ss_pred eEEEeecCCCCCHHHHHHHHHHHhC
Q 019334 75 LILGIWGGKGQGKSFQTELIFQAMG 99 (342)
Q Consensus 75 lglgL~GPPG~GKTllaravA~~~g 99 (342)
.-++|.|+||+|||++++.+.....
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTSC
T ss_pred cEEEEECCCCCCHHHHHHHHHhhcc
Confidence 5688889999999999999887654
No 452
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=92.62 E-value=0.073 Score=44.38 Aligned_cols=25 Identities=20% Similarity=0.084 Sum_probs=21.3
Q ss_pred CeEEEeecCCCCCHHHHHHHHHHHh
Q 019334 74 PLILGIWGGKGQGKSFQTELIFQAM 98 (342)
Q Consensus 74 PlglgL~GPPG~GKTllaravA~~~ 98 (342)
..-++|-|+||+|||++..+++...
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3567888999999999999998653
No 453
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=92.60 E-value=0.068 Score=43.37 Aligned_cols=24 Identities=38% Similarity=0.371 Sum_probs=21.0
Q ss_pred CeEEEeecCCCCCHHHHHHHHHHH
Q 019334 74 PLILGIWGGKGQGKSFQTELIFQA 97 (342)
Q Consensus 74 PlglgL~GPPG~GKTllaravA~~ 97 (342)
+.-++|.|++|+|||+++.++...
T Consensus 9 ~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 9 THKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 356888899999999999999876
No 454
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=92.59 E-value=0.073 Score=43.43 Aligned_cols=24 Identities=25% Similarity=0.209 Sum_probs=20.9
Q ss_pred CeEEEeecCCCCCHHHHHHHHHHH
Q 019334 74 PLILGIWGGKGQGKSFQTELIFQA 97 (342)
Q Consensus 74 PlglgL~GPPG~GKTllaravA~~ 97 (342)
+.-++|.|++|+|||+++.++...
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 356889999999999999999864
No 455
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=92.59 E-value=0.22 Score=45.30 Aligned_cols=22 Identities=18% Similarity=0.098 Sum_probs=18.8
Q ss_pred EEEeecCCCCCHHHHHHHHHHH
Q 019334 76 ILGIWGGKGQGKSFQTELIFQA 97 (342)
Q Consensus 76 glgL~GPPG~GKTllaravA~~ 97 (342)
-+.|.|+||||||++..++.+.
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 3567799999999999999765
No 456
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=92.58 E-value=0.071 Score=43.69 Aligned_cols=25 Identities=32% Similarity=0.302 Sum_probs=21.4
Q ss_pred CeEEEeecCCCCCHHHHHHHHHHHh
Q 019334 74 PLILGIWGGKGQGKSFQTELIFQAM 98 (342)
Q Consensus 74 PlglgL~GPPG~GKTllaravA~~~ 98 (342)
+.-++|.|++|+|||+++.++....
T Consensus 4 ~~ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 4 EYKLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEEEECCCCCCHHHHHHHHHhCC
Confidence 4568889999999999999998654
No 457
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=92.52 E-value=0.073 Score=44.38 Aligned_cols=24 Identities=17% Similarity=0.167 Sum_probs=21.1
Q ss_pred CeEEEeecCCCCCHHHHHHHHHHH
Q 019334 74 PLILGIWGGKGQGKSFQTELIFQA 97 (342)
Q Consensus 74 PlglgL~GPPG~GKTllaravA~~ 97 (342)
+.-|+|.|++|+|||+++.++...
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 357889999999999999999864
No 458
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=92.51 E-value=0.074 Score=44.13 Aligned_cols=24 Identities=33% Similarity=0.299 Sum_probs=20.9
Q ss_pred eEEEeecCCCCCHHHHHHHHHHHh
Q 019334 75 LILGIWGGKGQGKSFQTELIFQAM 98 (342)
Q Consensus 75 lglgL~GPPG~GKTllaravA~~~ 98 (342)
.-|++.|++|+|||+++.+++...
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 467888999999999999998653
No 459
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=92.51 E-value=0.057 Score=54.78 Aligned_cols=24 Identities=25% Similarity=0.414 Sum_probs=21.9
Q ss_pred eEEEeecCCCCCHHHHHHHHHHHh
Q 019334 75 LILGIWGGKGQGKSFQTELIFQAM 98 (342)
Q Consensus 75 lglgL~GPPG~GKTllaravA~~~ 98 (342)
-.++|.||.|||||++++++++..
T Consensus 313 e~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 313 EVIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 579999999999999999999865
No 460
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=92.41 E-value=0.12 Score=42.85 Aligned_cols=26 Identities=15% Similarity=-0.065 Sum_probs=22.1
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHH
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQA 97 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~ 97 (342)
+.+.-|+|.|++|+|||+++.++...
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcC
Confidence 45677888899999999999999843
No 461
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=92.39 E-value=0.07 Score=56.83 Aligned_cols=21 Identities=29% Similarity=0.360 Sum_probs=16.9
Q ss_pred EEEeecCCCCCHHHHHHHHHH
Q 019334 76 ILGIWGGKGQGKSFQTELIFQ 96 (342)
Q Consensus 76 glgL~GPPG~GKTllaravA~ 96 (342)
.++|+||||||||+.+..+..
T Consensus 377 ~~lI~GppGTGKT~~i~~~i~ 397 (802)
T 2xzl_A 377 LSLIQGPPGTGKTVTSATIVY 397 (802)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 578999999999987665543
No 462
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=92.38 E-value=0.051 Score=55.30 Aligned_cols=24 Identities=29% Similarity=0.544 Sum_probs=21.7
Q ss_pred eEEEeecCCCCCHHHHHHHHHHHh
Q 019334 75 LILGIWGGKGQGKSFQTELIFQAM 98 (342)
Q Consensus 75 lglgL~GPPG~GKTllaravA~~~ 98 (342)
-+++|.||.|||||++++++++..
T Consensus 295 ei~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 295 EIIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 478999999999999999999754
No 463
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=92.38 E-value=0.073 Score=43.76 Aligned_cols=24 Identities=21% Similarity=0.281 Sum_probs=20.8
Q ss_pred CeEEEeecCCCCCHHHHHHHHHHH
Q 019334 74 PLILGIWGGKGQGKSFQTELIFQA 97 (342)
Q Consensus 74 PlglgL~GPPG~GKTllaravA~~ 97 (342)
+.-++|.|++|+|||+++.++...
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 456888899999999999999854
No 464
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=92.37 E-value=0.057 Score=50.27 Aligned_cols=25 Identities=28% Similarity=0.187 Sum_probs=21.7
Q ss_pred eEEEeecCCCCCHHHHHHHHHHHhC
Q 019334 75 LILGIWGGKGQGKSFQTELIFQAMG 99 (342)
Q Consensus 75 lglgL~GPPG~GKTllaravA~~~g 99 (342)
..+.|-||+|||||++.++++....
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~~~ 194 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPGLK 194 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTCC
T ss_pred CeEEEECCCCCcHHHHHHHhccccc
Confidence 5788999999999999999986543
No 465
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=92.37 E-value=0.076 Score=43.28 Aligned_cols=27 Identities=19% Similarity=0.204 Sum_probs=22.2
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHh
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQAM 98 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~~ 98 (342)
+.+.-++|.|++|+|||+++.++...-
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCC
Confidence 344678899999999999999988643
No 466
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=92.37 E-value=0.072 Score=49.76 Aligned_cols=23 Identities=26% Similarity=0.183 Sum_probs=20.7
Q ss_pred eEEEeecCCCCCHHHHHHHHHHHh
Q 019334 75 LILGIWGGKGQGKSFQTELIFQAM 98 (342)
Q Consensus 75 lglgL~GPPG~GKTllaravA~~~ 98 (342)
..++|-||+|+|||++.++++ ..
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH-SC
T ss_pred cEEEEECCCCCCHHHHHHHHH-Hh
Confidence 578999999999999999998 54
No 467
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=92.35 E-value=0.098 Score=42.69 Aligned_cols=25 Identities=12% Similarity=-0.113 Sum_probs=21.1
Q ss_pred CCeEEEeecCCCCCHHHHHHHHHHH
Q 019334 73 VPLILGIWGGKGQGKSFQTELIFQA 97 (342)
Q Consensus 73 ~PlglgL~GPPG~GKTllaravA~~ 97 (342)
.+.-++|.|++|+|||+++.++...
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcC
Confidence 3466888899999999999998854
No 468
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=92.35 E-value=0.086 Score=45.06 Aligned_cols=26 Identities=12% Similarity=-0.019 Sum_probs=21.0
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHH
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQA 97 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~ 97 (342)
..+.-++|.|++|+|||+++..+...
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhC
Confidence 45577889999999999999888854
No 469
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=92.35 E-value=0.081 Score=43.24 Aligned_cols=23 Identities=13% Similarity=0.011 Sum_probs=20.0
Q ss_pred eEEEeecCCCCCHHHHHHHHHHH
Q 019334 75 LILGIWGGKGQGKSFQTELIFQA 97 (342)
Q Consensus 75 lglgL~GPPG~GKTllaravA~~ 97 (342)
.-++|.|+||+|||+++..+...
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46788999999999999998854
No 470
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=92.33 E-value=0.081 Score=49.88 Aligned_cols=31 Identities=19% Similarity=0.297 Sum_probs=24.7
Q ss_pred CCCCCCCCcceecCCCHHHHHHHHHHHhhcCCC
Q 019334 210 PLIRDGRMEKFYWQPNLEDILNIVHRMYEKDGI 242 (342)
Q Consensus 210 aLlRpGRfD~~i~vP~~~~R~~Il~~~~~~~~~ 242 (342)
.+++.|.||+++..| ++|..|+..++..+.+
T Consensus 136 ~~i~Qg~~~~il~~~--~eR~~ll~~l~~~~~~ 166 (339)
T 3qkt_A 136 IYIRQGQIDAILESD--EAREKVVREVLNLDKF 166 (339)
T ss_dssp TEECTTCTTGGGSCT--THHHHHHHHHHTTCTT
T ss_pred eEecchhHHHHHhCh--HHHHHHHHHHhCchhH
Confidence 578999999987656 6899999988776554
No 471
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=92.32 E-value=0.087 Score=43.67 Aligned_cols=26 Identities=23% Similarity=0.143 Sum_probs=22.0
Q ss_pred CCeEEEeecCCCCCHHHHHHHHHHHh
Q 019334 73 VPLILGIWGGKGQGKSFQTELIFQAM 98 (342)
Q Consensus 73 ~PlglgL~GPPG~GKTllaravA~~~ 98 (342)
.+.-|+|.|++|+|||+++.++....
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCC
Confidence 34678899999999999999998643
No 472
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=92.32 E-value=0.065 Score=54.28 Aligned_cols=24 Identities=21% Similarity=0.025 Sum_probs=20.3
Q ss_pred eEEEeecCCCCCHHHHHHHHHHHh
Q 019334 75 LILGIWGGKGQGKSFQTELIFQAM 98 (342)
Q Consensus 75 lglgL~GPPG~GKTllaravA~~~ 98 (342)
..++|++|.|+|||+.+-.++.++
T Consensus 23 ~~~ll~~~TGsGKTl~~~~~i~~~ 46 (699)
T 4gl2_A 23 KNIIICLPTGCGKTRVAVYIAKDH 46 (699)
T ss_dssp CCEEECCCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCcHHHHHHHHHHHH
Confidence 458999999999999988887653
No 473
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=92.28 E-value=0.063 Score=54.45 Aligned_cols=26 Identities=27% Similarity=0.517 Sum_probs=22.5
Q ss_pred CCeEEEeecCCCCCHHHHHHHHHHHh
Q 019334 73 VPLILGIWGGKGQGKSFQTELIFQAM 98 (342)
Q Consensus 73 ~PlglgL~GPPG~GKTllaravA~~~ 98 (342)
.--.++|.||.|||||++.+++++..
T Consensus 46 ~Ge~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 46 EGMVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 33579999999999999999999754
No 474
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=92.23 E-value=0.076 Score=44.86 Aligned_cols=24 Identities=21% Similarity=0.060 Sum_probs=20.5
Q ss_pred eEEEeecCCCCCHHHHHHHHHHHh
Q 019334 75 LILGIWGGKGQGKSFQTELIFQAM 98 (342)
Q Consensus 75 lglgL~GPPG~GKTllaravA~~~ 98 (342)
..++|++|+|+|||+++-+++.++
T Consensus 49 ~~~li~~~tGsGKT~~~~~~~~~~ 72 (216)
T 3b6e_A 49 KNIIICLPTGSGKTRVAVYIAKDH 72 (216)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHHHHH
Confidence 458899999999999998888764
No 475
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=92.16 E-value=0.068 Score=53.36 Aligned_cols=27 Identities=26% Similarity=0.335 Sum_probs=22.2
Q ss_pred CCCCeE--EEeecCCCCCHHHHHHHHHHH
Q 019334 71 VKVPLI--LGIWGGKGQGKSFQTELIFQA 97 (342)
Q Consensus 71 ~k~Plg--lgL~GPPG~GKTllaravA~~ 97 (342)
++..-. ++|.||+|+|||+|.+++++.
T Consensus 37 i~~Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 37 VSQGFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp CC-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred ecCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 444455 899999999999999999875
No 476
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=92.14 E-value=0.07 Score=52.84 Aligned_cols=24 Identities=25% Similarity=0.241 Sum_probs=21.9
Q ss_pred CCeEEEeecCCCCCHHHHHHHHHH
Q 019334 73 VPLILGIWGGKGQGKSFQTELIFQ 96 (342)
Q Consensus 73 ~PlglgL~GPPG~GKTllaravA~ 96 (342)
.+..++|-||+|+|||++.+++++
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHhC
Confidence 456899999999999999999998
No 477
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=92.10 E-value=0.089 Score=43.84 Aligned_cols=24 Identities=17% Similarity=0.019 Sum_probs=20.9
Q ss_pred eEEEeecCCCCCHHHHHHHHHHHh
Q 019334 75 LILGIWGGKGQGKSFQTELIFQAM 98 (342)
Q Consensus 75 lglgL~GPPG~GKTllaravA~~~ 98 (342)
.-|+|.|++|+|||+++.++...-
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 568899999999999999998653
No 478
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=92.06 E-value=0.11 Score=42.75 Aligned_cols=23 Identities=39% Similarity=0.384 Sum_probs=20.5
Q ss_pred eEEEeecCCCCCHHHHHHHHHHH
Q 019334 75 LILGIWGGKGQGKSFQTELIFQA 97 (342)
Q Consensus 75 lglgL~GPPG~GKTllaravA~~ 97 (342)
.-|+|.|++|+|||+++.++...
T Consensus 19 ~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 19 YKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 56889999999999999999865
No 479
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=92.03 E-value=0.082 Score=51.48 Aligned_cols=25 Identities=24% Similarity=0.154 Sum_probs=21.8
Q ss_pred eEEEeecCCCCCHHHHHHHHHHHhC
Q 019334 75 LILGIWGGKGQGKSFQTELIFQAMG 99 (342)
Q Consensus 75 lglgL~GPPG~GKTllaravA~~~g 99 (342)
..++|.||||+|||++.++++....
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred CEEEEECCCCccHHHHHHHHhcccc
Confidence 5789999999999999999986543
No 480
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=92.01 E-value=0.093 Score=43.59 Aligned_cols=25 Identities=16% Similarity=0.072 Sum_probs=20.8
Q ss_pred CCeEEEeecCCCCCHHHHHHHHHHH
Q 019334 73 VPLILGIWGGKGQGKSFQTELIFQA 97 (342)
Q Consensus 73 ~PlglgL~GPPG~GKTllaravA~~ 97 (342)
.+.-++|.|++|+|||++..++...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3456778899999999999999754
No 481
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=91.99 E-value=0.47 Score=43.25 Aligned_cols=23 Identities=22% Similarity=0.380 Sum_probs=20.2
Q ss_pred eEEEeecCCCCCHHHHHHHHHHH
Q 019334 75 LILGIWGGKGQGKSFQTELIFQA 97 (342)
Q Consensus 75 lglgL~GPPG~GKTllaravA~~ 97 (342)
.-+.|.|+||||||++..++.+.
T Consensus 4 ~~I~lvG~~n~GKSTLin~l~g~ 26 (274)
T 3i8s_A 4 LTIGLIGNPNSGKTTLFNQLTGS 26 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 46788899999999999999864
No 482
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=91.99 E-value=0.11 Score=50.30 Aligned_cols=30 Identities=27% Similarity=0.331 Sum_probs=25.5
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHhCCc
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQAMGIE 101 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~~g~~ 101 (342)
..|...+|.||.|||||++.+|++.-++..
T Consensus 24 ~~~~~~~i~G~nG~GKstll~ai~~~~~~~ 53 (430)
T 1w1w_A 24 GESNFTSIIGPNGSGKSNMMDAISFVLGVR 53 (430)
T ss_dssp TTCSEEEEECSTTSSHHHHHHHHHHHTTC-
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhhccc
Confidence 446789999999999999999999877653
No 483
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=91.95 E-value=0.37 Score=45.50 Aligned_cols=26 Identities=27% Similarity=0.450 Sum_probs=20.4
Q ss_pred CCCCeEEEeecCCCCCHHHHHHHHHHH
Q 019334 71 VKVPLILGIWGGKGQGKSFQTELIFQA 97 (342)
Q Consensus 71 ~k~PlglgL~GPPG~GKTllaravA~~ 97 (342)
.+.| -|.|.|.||+|||++..++.+.
T Consensus 29 ~~~~-~I~vvG~~~~GKSSLln~L~g~ 54 (353)
T 2x2e_A 29 LDLP-QIAVVGGQSAGKSSVLENFVGR 54 (353)
T ss_dssp CCCC-EEEEECBTTSSHHHHHHTTTTS
T ss_pred CCCC-eEEEECCCCCCHHHHHHHHhCC
Confidence 3445 4667799999999999998753
No 484
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.92 E-value=0.093 Score=43.91 Aligned_cols=24 Identities=21% Similarity=0.047 Sum_probs=21.3
Q ss_pred eEEEeecCCCCCHHHHHHHHHHHh
Q 019334 75 LILGIWGGKGQGKSFQTELIFQAM 98 (342)
Q Consensus 75 lglgL~GPPG~GKTllaravA~~~ 98 (342)
.-|+|.|++|+|||+++..+...-
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCcCHHHHHHHHhcCC
Confidence 568899999999999999998765
No 485
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=91.91 E-value=0.11 Score=43.61 Aligned_cols=27 Identities=30% Similarity=0.281 Sum_probs=22.3
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHh
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQAM 98 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~~ 98 (342)
+.+.-|+|.|++|+|||+++.++....
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCC
Confidence 345678899999999999999998654
No 486
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=91.90 E-value=0.081 Score=53.84 Aligned_cols=24 Identities=29% Similarity=0.548 Sum_probs=21.9
Q ss_pred eEEEeecCCCCCHHHHHHHHHHHh
Q 019334 75 LILGIWGGKGQGKSFQTELIFQAM 98 (342)
Q Consensus 75 lglgL~GPPG~GKTllaravA~~~ 98 (342)
-+++|-||.|||||++.+++++..
T Consensus 26 ei~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 26 TILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 589999999999999999999754
No 487
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=91.89 E-value=0.069 Score=44.02 Aligned_cols=24 Identities=21% Similarity=0.178 Sum_probs=20.1
Q ss_pred eEEEeecCCCCCHHHHHHHHHHHh
Q 019334 75 LILGIWGGKGQGKSFQTELIFQAM 98 (342)
Q Consensus 75 lglgL~GPPG~GKTllaravA~~~ 98 (342)
.-|+|.|++|+|||+++.++...-
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCc
Confidence 356777999999999999998653
No 488
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=91.86 E-value=0.12 Score=43.70 Aligned_cols=26 Identities=15% Similarity=0.083 Sum_probs=21.2
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHH
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQA 97 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~ 97 (342)
+.+.-|+|.|++|+|||+++.++...
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhC
Confidence 44577889999999999999999754
No 489
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=91.85 E-value=0.1 Score=43.16 Aligned_cols=24 Identities=29% Similarity=0.201 Sum_probs=21.0
Q ss_pred CeEEEeecCCCCCHHHHHHHHHHH
Q 019334 74 PLILGIWGGKGQGKSFQTELIFQA 97 (342)
Q Consensus 74 PlglgL~GPPG~GKTllaravA~~ 97 (342)
+.-|+|.|+||+|||+++.++...
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 357888999999999999999865
No 490
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=91.85 E-value=0.1 Score=50.29 Aligned_cols=37 Identities=16% Similarity=0.124 Sum_probs=30.9
Q ss_pred EEEeecCCCCCHHHHHHHHHHHhCCceEEeecc-cccc
Q 019334 76 ILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAG-ELES 112 (342)
Q Consensus 76 glgL~GPPG~GKTllaravA~~~g~~~i~vs~~-eL~s 112 (342)
.++|++|.|+|||+++-+++.+.+...+.+... +|..
T Consensus 110 ~~ll~~~TGsGKT~~~l~~i~~~~~~~Lvl~P~~~L~~ 147 (472)
T 2fwr_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVPTLALAE 147 (472)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCSCEEEEESSHHHHH
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEECCHHHHH
Confidence 488999999999999999999988888887775 5543
No 491
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=91.85 E-value=0.11 Score=43.23 Aligned_cols=24 Identities=17% Similarity=0.135 Sum_probs=20.7
Q ss_pred CeEEEeecCCCCCHHHHHHHHHHH
Q 019334 74 PLILGIWGGKGQGKSFQTELIFQA 97 (342)
Q Consensus 74 PlglgL~GPPG~GKTllaravA~~ 97 (342)
+.-|+|.|++|+|||+++..+...
T Consensus 20 ~~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 20 IFKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHcC
Confidence 357889999999999999998854
No 492
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=91.81 E-value=0.093 Score=44.05 Aligned_cols=25 Identities=28% Similarity=0.262 Sum_probs=21.5
Q ss_pred CeEEEeecCCCCCHHHHHHHHHHHh
Q 019334 74 PLILGIWGGKGQGKSFQTELIFQAM 98 (342)
Q Consensus 74 PlglgL~GPPG~GKTllaravA~~~ 98 (342)
+.-|+|.|++|+|||+++.++...-
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHCC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 3578899999999999999998653
No 493
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=91.80 E-value=0.081 Score=43.51 Aligned_cols=22 Identities=18% Similarity=0.027 Sum_probs=18.8
Q ss_pred EEEeecCCCCCHHHHHHHHHHH
Q 019334 76 ILGIWGGKGQGKSFQTELIFQA 97 (342)
Q Consensus 76 glgL~GPPG~GKTllaravA~~ 97 (342)
-++|.|++|+|||++..++...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 3677899999999999998853
No 494
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.72 E-value=0.12 Score=43.45 Aligned_cols=26 Identities=19% Similarity=0.202 Sum_probs=20.9
Q ss_pred CCCeEEEeecCCCCCHHHHHHHHHHH
Q 019334 72 KVPLILGIWGGKGQGKSFQTELIFQA 97 (342)
Q Consensus 72 k~PlglgL~GPPG~GKTllaravA~~ 97 (342)
..+.-|+|.|+||+|||+++.++...
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhC
Confidence 33467888999999999999999854
No 495
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=91.68 E-value=0.17 Score=48.26 Aligned_cols=33 Identities=24% Similarity=0.413 Sum_probs=26.3
Q ss_pred eEEEeecCCCCCHHHHHHHHHHH---hCCceEEeec
Q 019334 75 LILGIWGGKGQGKSFQTELIFQA---MGIEPVIMSA 107 (342)
Q Consensus 75 lglgL~GPPG~GKTllaravA~~---~g~~~i~vs~ 107 (342)
..++|.||+|+|||++++.++.. .|..++.++.
T Consensus 36 ~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~ 71 (392)
T 4ag6_A 36 SNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDP 71 (392)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEES
T ss_pred CceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 45788999999999999998865 4666666654
No 496
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=91.66 E-value=0.084 Score=49.28 Aligned_cols=25 Identities=28% Similarity=0.376 Sum_probs=20.1
Q ss_pred CCeEEEeecCCCCCHHHHHHHHHHH
Q 019334 73 VPLILGIWGGKGQGKSFQTELIFQA 97 (342)
Q Consensus 73 ~PlglgL~GPPG~GKTllaravA~~ 97 (342)
...-|+|-||+|+|||++.+.++..
T Consensus 17 ~~~~I~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 17 FEFTLMVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHC-
T ss_pred CCEEEEEECCCCCCHHHHHHHHhCC
Confidence 3456689999999999999998753
No 497
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=91.61 E-value=0.1 Score=42.82 Aligned_cols=24 Identities=25% Similarity=0.224 Sum_probs=20.3
Q ss_pred CeEEEeecCCCCCHHHHHHHHHHH
Q 019334 74 PLILGIWGGKGQGKSFQTELIFQA 97 (342)
Q Consensus 74 PlglgL~GPPG~GKTllaravA~~ 97 (342)
+.-++|.|+||+|||+++.++...
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 356788899999999999999843
No 498
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=91.58 E-value=0.22 Score=48.52 Aligned_cols=26 Identities=23% Similarity=0.203 Sum_probs=22.4
Q ss_pred CCeEEEeecCCCCCHHHHHHHHHHHh
Q 019334 73 VPLILGIWGGKGQGKSFQTELIFQAM 98 (342)
Q Consensus 73 ~PlglgL~GPPG~GKTllaravA~~~ 98 (342)
.+.-+.|-|+||+|||+|.+++++..
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~ 204 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKE 204 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTST
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCc
Confidence 35678899999999999999998764
No 499
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=91.52 E-value=0.11 Score=43.55 Aligned_cols=23 Identities=35% Similarity=0.446 Sum_probs=20.2
Q ss_pred eEEEeecCCCCCHHHHHHHHHHH
Q 019334 75 LILGIWGGKGQGKSFQTELIFQA 97 (342)
Q Consensus 75 lglgL~GPPG~GKTllaravA~~ 97 (342)
.-|+|.|++|+|||+++..+...
T Consensus 22 ~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 22 VNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCcHHHHHHHHHhC
Confidence 56889999999999999988764
No 500
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=91.52 E-value=0.11 Score=43.35 Aligned_cols=25 Identities=24% Similarity=0.092 Sum_probs=21.0
Q ss_pred CeEEEeecCCCCCHHHHHHHHHHHh
Q 019334 74 PLILGIWGGKGQGKSFQTELIFQAM 98 (342)
Q Consensus 74 PlglgL~GPPG~GKTllaravA~~~ 98 (342)
+.-|+|.|++|+|||+++.++...-
T Consensus 14 ~~ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 14 LHKVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCC
Confidence 3568888999999999999998643
Done!