BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019335
(342 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2FFI|A Chain A, Crystal Structure Of Putative 2-pyrone-4,6-dicarboxylic
Acid Hydrolase From Pseudomonas Putida, Northeast
Structural Genomics Target Ppr23.
pdb|2FFI|B Chain B, Crystal Structure Of Putative 2-pyrone-4,6-dicarboxylic
Acid Hydrolase From Pseudomonas Putida, Northeast
Structural Genomics Target Ppr23
Length = 288
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 68/258 (26%), Positives = 106/258 (41%), Gaps = 43/258 (16%)
Query: 63 IDSHLHVWASPEEAADKFPYFPGQEPTLPGHVDFLLQCMEEASVDGALIVQPINHKFDHS 122
IDSH HV++ A + Y P + L D+L Q G L VQP D+
Sbjct: 15 IDSHAHVFSRGLNLASQRRYAPNYDAPLG---DYLGQLRAHGFSHGVL-VQPSFLGTDNR 70
Query: 123 LVTSVLKKYPSKFVGCCLANPAEDVIGIKQLEQLILKD----GFRAVRFNPYLWPSGQQ- 177
+ S L+ P + G + +EQ L + G R VR N GQ
Sbjct: 71 YLLSALQTVPGQLRGVVXLE--------RDVEQATLAEXARLGVRGVRLNL----XGQDX 118
Query: 178 --MTNEVGKAMFSKAGELGVPVGFMCMKGLNLHISEIEELCTEFP--STTVLLDHLAFCK 233
+T + + + GE G V L+ +++I L +++DH F +
Sbjct: 119 PDLTGAQWRPLLERIGEQGWHVE------LHRQVADIPVLVRALQPYGLDIVIDH--FGR 170
Query: 234 PPSNDEESL-AFSNLLKLSRFPQVYVKFSALFRVSRMP-----FPYQDLSSPLSQVVSSF 287
P + F+ LL LS +V+VK S ++R+ P F Q L + + + +
Sbjct: 171 PDARRGLGQPGFAELLTLSGRGKVWVKVSGIYRLQGSPEENLAFARQALCA----LEAHY 226
Query: 288 GANRVMWGSDFPYVVPEC 305
GA R+ WGSD+P+ E
Sbjct: 227 GAERLXWGSDWPHTQHES 244
>pdb|4D8L|A Chain A, Crystal Structure Of The 2-pyrone-4,6-dicarboxylic Acid
Hydrolase From Sphingomonas Paucimobilis
Length = 303
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 61/257 (23%), Positives = 111/257 (43%), Gaps = 32/257 (12%)
Query: 56 TPSKVKI------IDSHLHVWASPEEAADKFPYFPGQEPTLPGHV--DFLLQCMEEASVD 107
TPSK + ID+H HV+ +FP+ P + LP D L +
Sbjct: 15 TPSKPRYTPPPGAIDAHCHVFGP----MAQFPFSPKAK-YLPRDAGPDMLFALRDHLGFA 69
Query: 108 GALIVQPINHKFDHSLVTSVLKKYPSKFVGCCLANPAEDVIGIKQLEQLILKDGFRAVRF 167
+IVQ H D++ + + K G + +PA D + L + G R +RF
Sbjct: 70 RNVIVQASCHGTDNAATLDAIARAQGKARGIAVVDPAIDEAELAALHE----GGMRGIRF 125
Query: 168 NPYLWPSGQQMTNEVGKAMFSK-AGELGVPVGFMCMKGLNLHI-SEIEELCTEFPSTTVL 225
N +L +++ ++ K F + AG L P G+ + I E+ P ++
Sbjct: 126 N-FL----KRLVDDAPKDKFLEVAGRL--PAGWHVVIYFEADILEELRPFMDAIP-VPIV 177
Query: 226 LDHLAF--CKPPSNDEESLAFSNLLKLSRFPQVYVKFSALFRVSRMPFPYQDLSSPLSQV 283
+DH+ + + + AF LL ++ K + R+ P+ D + ++ +
Sbjct: 178 IDHMGRPDVRQGPDGADMKAFRRLLDSRE--DIWFKATCPDRLDPAGPPWDDFARSVAPL 235
Query: 284 VSSFGANRVMWGSDFPY 300
V+ + A+RV+WG+D+P+
Sbjct: 236 VADY-ADRVIWGTDWPH 251
>pdb|4DIA|A Chain A, Crystal Structure Of The D248n Mutant Of
2-pyrone-4,6-dicarboxylic Acid Hydrolase From
Sphingomonas Paucimobilis Complexed With Substrate At Ph
4.6
Length = 303
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 60/257 (23%), Positives = 111/257 (43%), Gaps = 32/257 (12%)
Query: 56 TPSKVKI------IDSHLHVWASPEEAADKFPYFPGQEPTLPGHV--DFLLQCMEEASVD 107
TPSK + ID+H HV+ +FP+ P + LP D L +
Sbjct: 15 TPSKPRYTPPPGAIDAHCHVFGP----MAQFPFSPKAK-YLPRDAGPDMLFALRDHLGFA 69
Query: 108 GALIVQPINHKFDHSLVTSVLKKYPSKFVGCCLANPAEDVIGIKQLEQLILKDGFRAVRF 167
+IVQ H D++ + + K G + +PA D + L + G R +RF
Sbjct: 70 RNVIVQASCHGTDNAATLDAIARAQGKARGIAVVDPAIDEAELAALHE----GGMRGIRF 125
Query: 168 NPYLWPSGQQMTNEVGKAMFSK-AGELGVPVGFMCMKGLNLHI-SEIEELCTEFPSTTVL 225
N +L +++ ++ K F + AG L P G+ + I E+ P ++
Sbjct: 126 N-FL----KRLVDDAPKDKFLEVAGRL--PAGWHVVIYFEADILEELRPFMDAIP-VPIV 177
Query: 226 LDHLAF--CKPPSNDEESLAFSNLLKLSRFPQVYVKFSALFRVSRMPFPYQDLSSPLSQV 283
+DH+ + + + AF LL ++ K + R+ P+ D + ++ +
Sbjct: 178 IDHMGRPDVRQGPDGADMKAFRRLLDSRE--DIWFKATCPDRLDPAGPPWDDFARSVAPL 235
Query: 284 VSSFGANRVMWGSDFPY 300
V+ + A+RV+WG+++P+
Sbjct: 236 VADY-ADRVIWGTNWPH 251
>pdb|4DI8|A Chain A, Crystal Structure Of The D248a Mutant Of
2-pyrone-4,6-dicarboxylic Acid Hydrolase From
Sphingomonas Paucimobilis Complexed With Substrate At Ph
8.5
pdb|4DI8|B Chain B, Crystal Structure Of The D248a Mutant Of
2-pyrone-4,6-dicarboxylic Acid Hydrolase From
Sphingomonas Paucimobilis Complexed With Substrate At Ph
8.5
pdb|4DI9|A Chain A, Crystal Structure Of The D248a Mutant Of
2-pyrone-4,6-dicarboxylic Acid Hydrolase From
Sphingomonas Paucimobilis Complexed With Substrate At Ph
6.5
Length = 303
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 60/257 (23%), Positives = 110/257 (42%), Gaps = 32/257 (12%)
Query: 56 TPSKVKI------IDSHLHVWASPEEAADKFPYFPGQEPTLPGHV--DFLLQCMEEASVD 107
TPSK + ID+H HV+ +FP+ P + LP D L +
Sbjct: 15 TPSKPRYTPPPGAIDAHCHVFGP----MAQFPFSPKAK-YLPRDAGPDMLFALRDHLGFA 69
Query: 108 GALIVQPINHKFDHSLVTSVLKKYPSKFVGCCLANPAEDVIGIKQLEQLILKDGFRAVRF 167
+IVQ H D++ + + K G + +PA D + L + G R +RF
Sbjct: 70 RNVIVQASCHGTDNAATLDAIARAQGKARGIAVVDPAIDEAELAALHE----GGMRGIRF 125
Query: 168 NPYLWPSGQQMTNEVGKAMFSK-AGELGVPVGFMCMKGLNLHI-SEIEELCTEFPSTTVL 225
N +L +++ ++ K F + AG L P G+ + I E+ P ++
Sbjct: 126 N-FL----KRLVDDAPKDKFLEVAGRL--PAGWHVVIYFEADILEELRPFMDAIP-VPIV 177
Query: 226 LDHLAF--CKPPSNDEESLAFSNLLKLSRFPQVYVKFSALFRVSRMPFPYQDLSSPLSQV 283
+DH+ + + + AF LL ++ K + R+ P+ D + ++ +
Sbjct: 178 IDHMGRPDVRQGPDGADMKAFRRLLDSRE--DIWFKATCPDRLDPAGPPWDDFARSVAPL 235
Query: 284 VSSFGANRVMWGSDFPY 300
V+ + A+RV+WG+ +P+
Sbjct: 236 VADY-ADRVIWGTAWPH 251
>pdb|4DLF|A Chain A, Crystal Structure Of An Amidohydrolase (Cog3618) From
Burkholderia Multivorans (Target Efi-500235) With Bound
Zn, Space Group P3221
pdb|4DLM|A Chain A, Crystal Structure Of An Amidohydrolase (Cog3618) From
Burkholderia Multivorans (Target Efi-500235) With Bound
Zn, Space Group P212121
pdb|4DNM|A Chain A, Crystal Structure Of An Amidohydrolase (Cog3618) From
Burkholderia Multivorans (Target Efi-500235) With Bound
Hepes, Space Group P3221
pdb|4DO7|A Chain A, Crystal Structure Of An Amidohydrolase (Cog3618) From
Burkholderia Multivorans (Target Efi-500235) With Bound
Zn, Space Group C2
pdb|4DO7|B Chain B, Crystal Structure Of An Amidohydrolase (Cog3618) From
Burkholderia Multivorans (Target Efi-500235) With Bound
Zn, Space Group C2
Length = 303
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 63/143 (44%), Gaps = 18/143 (12%)
Query: 211 EIEELCTEFPSTTVLLDHLAFCKPP----SNDEESLAF--SNLLKLSRFPQVYVKFSAL- 263
+++ C + ++LDH KP D+ +LA + L +L+ P V K S L
Sbjct: 149 DVQAFCARHDAHWLVLDHAG--KPALAEFDRDDTALARWRAALRELAALPHVVCKLSGLV 206
Query: 264 ----FRVSRMPFPYQDLSSPLSQVVSSFGANRVMWGSDFPYVVPECGYKGGREAASLIAN 319
+R + + L + +FG R+M+GSD+P + Y E ASL+
Sbjct: 207 TEADWRRGLRASDLRHIEQCLDAALDAFGPQRLMFGSDWPVCLLAASYD---EVASLVER 263
Query: 320 --EVPLSPSELEWIMGGTIMQLF 340
E LS +E + GGT + +
Sbjct: 264 WAESRLSAAERSALWGGTAARCY 286
>pdb|4I6K|A Chain A, Crystal Structure Of Probable 2-Pyrone-4,6-Dicarboxylic
Acid Hydrolase Abaye1769 (Target Efi-505029) From
Acinetobacter Baumannii With Citric Acid Bound
Length = 294
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/254 (20%), Positives = 98/254 (38%), Gaps = 28/254 (11%)
Query: 59 KVKIIDSHLHVWASPEEAADKFPYFPGQEPTLPGHVDFLLQCMEEASVDGALIVQPINHK 118
K+ ID+H HV+++ + + + Y P E T V + ++E + ++VQP
Sbjct: 24 KMNCIDTHAHVFSTQDHSIETARYAPDYEAT----VQSFISHLDEHNFTHGVLVQPSFLG 79
Query: 119 FDHSLVTSVLKKYPSKFVGCCLANPAEDVIGIKQLEQLILKDGFRAVRFN------PYL- 171
++ + + +++YP + G + + L+ G VR N P L
Sbjct: 80 TNNQAMLNAIQQYPDRLKGIAVVQHTTTFNELVNLK----AQGIVGVRLNLFGLNLPALN 135
Query: 172 WPSGQQMTNEVGKAMFSKAGELGVPVGFMCMKGLNLHISEIEELCTEFPSTTVLLDHLAF 231
P Q+ V + EL P ++ + ++ E S V++DH
Sbjct: 136 TPDWQKFLRNVESLNWQV--ELHAPPKYLVQL-----LPQLNEY-----SFDVVIDHFGR 183
Query: 232 CKPPSNDEESLAFSNLLKLSRFPQVYVKFSALFRVSRMPFPYQDLSSPLSQVVSSFGANR 291
P E+ + L L Q ++K S +R+ P + ++
Sbjct: 184 VDPVKGIEDP-DYQKFLSLLNVKQHWIKVSGFYRLGATPSNINIAQQAYNIFKEKGFLHK 242
Query: 292 VMWGSDFPYVVPEC 305
++WGSD+P+ E
Sbjct: 243 LIWGSDWPHTQHES 256
>pdb|3IRS|A Chain A, Crystal Structure Of Uncharacterized Tim-Barrel Protein
Bb4693 From Bordetella Bronchiseptica
pdb|3IRS|B Chain B, Crystal Structure Of Uncharacterized Tim-Barrel Protein
Bb4693 From Bordetella Bronchiseptica
pdb|3IRS|C Chain C, Crystal Structure Of Uncharacterized Tim-Barrel Protein
Bb4693 From Bordetella Bronchiseptica
pdb|3K4W|A Chain A, Crystal Structure Of Uncharacterized Tim-Barrel Protein
Bb4693 From Bordetella Bronchiseptica
pdb|3K4W|B Chain B, Crystal Structure Of Uncharacterized Tim-Barrel Protein
Bb4693 From Bordetella Bronchiseptica
pdb|3K4W|C Chain C, Crystal Structure Of Uncharacterized Tim-Barrel Protein
Bb4693 From Bordetella Bronchiseptica
pdb|3K4W|D Chain D, Crystal Structure Of Uncharacterized Tim-Barrel Protein
Bb4693 From Bordetella Bronchiseptica
pdb|3K4W|E Chain E, Crystal Structure Of Uncharacterized Tim-Barrel Protein
Bb4693 From Bordetella Bronchiseptica
pdb|3K4W|F Chain F, Crystal Structure Of Uncharacterized Tim-Barrel Protein
Bb4693 From Bordetella Bronchiseptica
pdb|3K4W|G Chain G, Crystal Structure Of Uncharacterized Tim-Barrel Protein
Bb4693 From Bordetella Bronchiseptica
pdb|3K4W|H Chain H, Crystal Structure Of Uncharacterized Tim-Barrel Protein
Bb4693 From Bordetella Bronchiseptica
pdb|3K4W|I Chain I, Crystal Structure Of Uncharacterized Tim-Barrel Protein
Bb4693 From Bordetella Bronchiseptica
pdb|3K4W|J Chain J, Crystal Structure Of Uncharacterized Tim-Barrel Protein
Bb4693 From Bordetella Bronchiseptica
pdb|3K4W|K Chain K, Crystal Structure Of Uncharacterized Tim-Barrel Protein
Bb4693 From Bordetella Bronchiseptica
pdb|3K4W|L Chain L, Crystal Structure Of Uncharacterized Tim-Barrel Protein
Bb4693 From Bordetella Bronchiseptica
Length = 291
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 51/222 (22%), Positives = 90/222 (40%), Gaps = 30/222 (13%)
Query: 124 VTSVLKKYPSKFVGCCLANPAEDVIGIKQLEQLILKDGFRAVRFNPYLWPSGQQMTNEVG 183
V +V K YP KF A + Q+++ IL G R V P +W + + +
Sbjct: 82 VAAVAKAYPDKFHPVGSIEAATRKEAMAQMQE-ILDLGIRIVNLEPGVWATPMHVDDRRL 140
Query: 184 KAMFSKAGELGVPVGFMCMKGLNLHIS-----EIEELCTEFPSTTVLLDHLAFCKPPSND 238
+++ + G+PV M I+ I+ + +FP TV+ H + P +
Sbjct: 141 YPLYAFCEDNGIPVIMMTGGNAGPDITYTNPEHIDRVLGDFPDLTVVSSHGNW--PWVQE 198
Query: 239 EESLAFSNLLKLSRFPQVYVKFSALFRVSRMPFPYQDLSSPLSQVVSSFGANRVMWGSDF 298
+AF R P +Y+ S + +P + Q +SF A+R+++G+ +
Sbjct: 199 IIHVAF-------RRPNLYL--SPDMYLYNLPG-----HADFIQAANSFLADRMLFGTAY 244
Query: 299 PYVVPECGYKGGREAASLIANEVPLSPSELEWIMGGTIMQLF 340
P C K E + P+ P +E I+ G +L
Sbjct: 245 PM----CPLKEYTEWFLTL----PIKPDAMEKILHGNAERLL 278
>pdb|4INF|A Chain A, Crystal Structure Of Amidohydrolase Saro_0799 (target
Efi-505250) From Novosphingobium Aromaticivorans Dsm
12444 With Bound Calcium
pdb|4INF|B Chain B, Crystal Structure Of Amidohydrolase Saro_0799 (target
Efi-505250) From Novosphingobium Aromaticivorans Dsm
12444 With Bound Calcium
pdb|4INF|C Chain C, Crystal Structure Of Amidohydrolase Saro_0799 (target
Efi-505250) From Novosphingobium Aromaticivorans Dsm
12444 With Bound Calcium
pdb|4INF|D Chain D, Crystal Structure Of Amidohydrolase Saro_0799 (target
Efi-505250) From Novosphingobium Aromaticivorans Dsm
12444 With Bound Calcium
pdb|4ING|A Chain A, Crystal Structure Of Amidohydrolase Saro_0799 (target
Efi-505250) From Novosphingobium Aromaticivorans Dsm
12444 Complexed With Calcium And
4-hydroxy-3-methoxy-5-nitrobenzoic Acid
pdb|4ING|B Chain B, Crystal Structure Of Amidohydrolase Saro_0799 (target
Efi-505250) From Novosphingobium Aromaticivorans Dsm
12444 Complexed With Calcium And
4-hydroxy-3-methoxy-5-nitrobenzoic Acid
Length = 373
Score = 32.3 bits (72), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 46/249 (18%), Positives = 92/249 (36%), Gaps = 57/249 (22%)
Query: 101 MEEASVDGALI------VQPINHKFDHS---------LVTSVLKKYPSKFVGCCLANPAE 145
M+ +D A++ VQP+ H D + + +KYP +F+G P +
Sbjct: 99 MDATGIDKAILALTSPGVQPL-HDLDEARTLATRANDTLADACQKYPDRFIGMGTVAPQD 157
Query: 146 DVIGIKQLEQLILKDGFRAVRFNPYLWPSGQQMTNEVGKAMFS----------------- 188
+++ + + GF+ ++ N + G+ + E +F
Sbjct: 158 PEWSAREIHRGARELGFKGIQINSH--TQGRYLDEEFFDPIFRALVEVDQPLYIHPATSP 215
Query: 189 --------KAGELGVPVGFMCMKGLNLHISEIEELCTEFPSTTVLLDHLAFCKP------ 234
+AG G GF G++L + ++PS +++ H+ P
Sbjct: 216 DSMIDPMLEAGLDGAIFGFGVETGMHLLRLITIGIFDKYPSLQIMVGHMGEALPYWLYRL 275
Query: 235 ---PSNDEESLAFSNLLKLSRFPQVYVKFSALFRVSRMPFPYQDLSSPLSQVVSSFGANR 291
S + + L + + Y+K + L V+ ++ QV+ G +R
Sbjct: 276 DYMHQAGVRSQRYERMKPLKKTIEGYLKSNVL--VTNSGVAWEPAIKFCQQVM---GEDR 330
Query: 292 VMWGSDFPY 300
VM+ D+PY
Sbjct: 331 VMYAMDYPY 339
>pdb|2PLA|A Chain A, Crystal Structure Of Human Glycerol-3-Phosphate
Dehydrogenase 1-Like Protein
pdb|2PLA|B Chain B, Crystal Structure Of Human Glycerol-3-Phosphate
Dehydrogenase 1-Like Protein
Length = 349
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Query: 78 DKFPYFPGQEPTLPGHVDFLLQCMEEASVDGALIVQPINHKFDHSLVTSVLKKYPSKFVG 137
+ Y PG + LP +V + + EA D L+V I H+F H + + + P K +G
Sbjct: 61 ENVKYLPGHK--LPENV-VAMSNLSEAVQDADLLVFVIPHQFIHRICDEITGRVPKKALG 117
Query: 138 CCL 140
L
Sbjct: 118 ITL 120
>pdb|3CJP|A Chain A, Crystal Structure Of An Uncharacterized Amidohydrolase
Cac3332 From Clostridium Acetobutylicum
pdb|3CJP|B Chain B, Crystal Structure Of An Uncharacterized Amidohydrolase
Cac3332 From Clostridium Acetobutylicum
Length = 272
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 78/185 (42%), Gaps = 39/185 (21%)
Query: 124 VTSVLKKYPSKFVGCCLANPAEDVIGIKQ------LEQLILKDGFRAVRFNPYLWPSGQQ 177
+T+V++ YPS++VG N +G+ + +E+ I+ + + L P+ Q
Sbjct: 77 LTNVIQAYPSRYVG--FGNVP---VGLSENDTNSYIEENIVNNKLVGI---GELTPASGQ 128
Query: 178 MTNEVGKAMFSKAGELG-VPVGFMCMKGLNLH-ISEIEELCTEFPSTTVLLDHLAFCKPP 235
+ + K +F + + G +P+ L L I EI ELC FP V+L H+
Sbjct: 129 IKSL--KPIFKYSMDSGSLPIWIHAFNPLVLQDIKEIAELCKAFPKVPVILGHMGGSNWM 186
Query: 236 SNDEESLAFSNLLKLSRFPQVYVKFSALFRVSRMPFPYQDLSSPLSQVVSSFGANRVMWG 295
+ E + NL Y+ SA F + +L PL + ++G
Sbjct: 187 TAVELAKEIQNL---------YLDTSAYFSTFVLKIVINEL--PL----------KCIFG 225
Query: 296 SDFPY 300
+D P+
Sbjct: 226 TDMPF 230
>pdb|2GWG|A Chain A, Crystal Structure Of 4-Oxalomesaconate Hydratase, Ligj,
From Rhodopseudomonas Palustris, Northeast Structural
Genomics Target Rpr66.
pdb|2GWG|B Chain B, Crystal Structure Of 4-Oxalomesaconate Hydratase, Ligj,
From Rhodopseudomonas Palustris, Northeast Structural
Genomics Target Rpr66
Length = 350
Score = 27.7 bits (60), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 40/94 (42%), Gaps = 10/94 (10%)
Query: 121 HSLVTSVLKKYPSKFVGCCL--ANPAED-VIGIKQLEQLILKDGFRAVRFNPYLWPSGQQ 177
+ L V + +P F+G +P D I +LE+ + + GF A+ NP PSG
Sbjct: 93 NELCYRVSQLFPDNFIGAAXLPQSPGVDPKTCIPELEKCVKEYGFVAINLNPD--PSGGH 150
Query: 178 -----MTNEVGKAMFSKAGELGVPVGFMCMKGLN 206
+T+ + ++ K EL +P N
Sbjct: 151 WTSPPLTDRIWYPIYEKXVELEIPAXIHVSTSCN 184
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,329,089
Number of Sequences: 62578
Number of extensions: 418482
Number of successful extensions: 1126
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1120
Number of HSP's gapped (non-prelim): 12
length of query: 342
length of database: 14,973,337
effective HSP length: 100
effective length of query: 242
effective length of database: 8,715,537
effective search space: 2109159954
effective search space used: 2109159954
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)