BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 019335
         (342 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P55567|Y4MH_RHISN Uncharacterized protein y4mH OS=Rhizobium sp. (strain NGR234)
           GN=NGR_a02510 PE=4 SV=1
          Length = 297

 Score = 36.2 bits (82), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 57/267 (21%), Positives = 107/267 (40%), Gaps = 37/267 (13%)

Query: 58  SKVKIIDSHLHVWASPEEAADKFPYF-PGQEPTLPGHV----------DFLLQCMEEASV 106
           S + IID H H+W   +   + +P+   G +P+  G            DFL     +  V
Sbjct: 2   SDIAIIDPHFHLW---DLETNYYPWLSDGVKPSAFGDYTAINKTYLIEDFLADAKNQNLV 58

Query: 107 DGALI---VQPINHKFDHSLVTSVLKK--YPSKFVGCCLANPAEDVIGIKQLEQLILKDG 161
               +     P N   +   +  V  K  +P   VG   A+  +  +G   L++ +    
Sbjct: 59  KAVHLDVGFDPTNPAGETKWLQGVADKHGFPHGIVG--YADFRKPDVG-DLLDEHMQYAN 115

Query: 162 FRAVRFNPYLWPSGQQMTNEVGKAMFSKAGELGVPVGFMCMKGLNL-------HISEIEE 214
           FR +R +      G +    + +   S+  E       +  +GL+         + E  E
Sbjct: 116 FRGIRQSMNFHTDGAKTY--LNEPEVSRTPEWRQGFKELARRGLSYDLQLYYWQMEEFLE 173

Query: 215 LCTEFPSTTVLLDHLAF-CKPPSNDEESLAFSNLLK-LSRFPQVYVKFSALFRVSRMPFP 272
           L  +FP   ++L+H       PS+ E    +   +K L++ P V  K S L  +    + 
Sbjct: 174 LARDFPDVQIILNHTGMQVDGPSHFE---GWRKAMKTLAQAPNVACKISGL-GMGNWNWT 229

Query: 273 YQDLSSPLSQVVSSFGANRVMWGSDFP 299
            + +   + + +++FG +R M+ S+FP
Sbjct: 230 SESIRPYVEEAIAAFGVDRAMFASNFP 256


>sp|P13688|CEAM1_HUMAN Carcinoembryonic antigen-related cell adhesion molecule 1 OS=Homo
           sapiens GN=CEACAM1 PE=1 SV=2
          Length = 526

 Score = 33.1 bits (74), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 56/125 (44%), Gaps = 11/125 (8%)

Query: 227 DHLAF-CKPPSNDEESLAFSNLLKLSRFPQVYV----KFSALFRVSRMPF-PYQ-DLSSP 279
           D +AF C+P + D   L + N   L   P++ +    +   L  V+R    PY+ ++ +P
Sbjct: 161 DAVAFTCEPETQDTTYLWWINNQSLPVSPRLQLSNGNRTLTLLSVTRNDTGPYECEIQNP 220

Query: 280 LSQVVSSFGANRVMWGSDFPYVVPECGYK--GGREAASLIANEVPLSPSELEWIMGGTIM 337
           +S   S      V +G D P + P   Y   G   + S  A   P  P++  W++ GT  
Sbjct: 221 VSANRSDPVTLNVTYGPDTPTISPSDTYYRPGANLSLSCYAASNP--PAQYSWLINGTFQ 278

Query: 338 QLFQD 342
           Q  Q+
Sbjct: 279 QSTQE 283


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.319    0.135    0.408 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 131,976,969
Number of Sequences: 539616
Number of extensions: 5505666
Number of successful extensions: 12011
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 12009
Number of HSP's gapped (non-prelim): 9
length of query: 342
length of database: 191,569,459
effective HSP length: 118
effective length of query: 224
effective length of database: 127,894,771
effective search space: 28648428704
effective search space used: 28648428704
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)