Query 019335
Match_columns 342
No_of_seqs 184 out of 1766
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 08:37:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019335.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019335hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01311 PDC_hydrolase 2-pyrone 100.0 3.1E-42 6.7E-47 314.7 27.2 258 62-339 2-263 (263)
2 COG3618 Predicted metal-depend 100.0 3.7E-42 8E-47 305.6 23.4 272 57-342 4-278 (279)
3 PF04909 Amidohydro_2: Amidohy 100.0 2.6E-36 5.7E-41 275.7 12.9 245 63-341 1-272 (273)
4 COG2159 Predicted metal-depend 100.0 1.5E-33 3.2E-38 259.8 23.1 218 98-341 55-289 (293)
5 cd01310 TatD_DNAse TatD like p 99.9 5.2E-26 1.1E-30 205.8 23.4 237 62-341 1-251 (251)
6 TIGR00010 hydrolase, TatD fami 99.9 1.4E-23 3E-28 190.1 23.7 238 62-341 1-251 (252)
7 COG0084 TatD Mg-dependent DNas 99.9 5.4E-23 1.2E-27 184.5 25.6 239 60-341 1-255 (256)
8 KOG4245 Predicted metal-depend 99.9 4E-25 8.7E-30 184.8 9.9 235 92-341 10-286 (297)
9 PRK10812 putative DNAse; Provi 99.9 3.5E-21 7.7E-26 175.3 24.2 242 60-341 1-255 (265)
10 PRK11449 putative deoxyribonuc 99.9 4.1E-21 8.8E-26 174.4 24.2 241 58-341 1-257 (258)
11 PRK10425 DNase TatD; Provision 99.9 4.8E-20 1E-24 167.2 22.9 238 62-341 1-257 (258)
12 PF01026 TatD_DNase: TatD rela 99.8 1.2E-19 2.6E-24 165.0 19.5 237 63-341 1-255 (255)
13 cd01294 DHOase Dihydroorotase 99.7 1.4E-14 3.1E-19 136.9 24.5 247 61-341 5-296 (335)
14 cd00530 PTE Phosphotriesterase 99.6 1.5E-13 3.2E-18 127.4 20.6 233 96-340 36-293 (293)
15 KOG3020 TatD-related DNase [Re 99.5 6.6E-12 1.4E-16 113.9 20.7 238 61-341 17-295 (296)
16 PRK05451 dihydroorotase; Provi 99.4 2.8E-11 6.1E-16 114.8 23.3 246 61-341 9-302 (345)
17 cd01292 metallo-dependent_hydr 99.4 2.1E-11 4.6E-16 110.3 21.1 225 93-338 36-274 (275)
18 COG1099 Predicted metal-depend 99.4 1.8E-11 3.9E-16 105.0 19.0 233 61-341 1-252 (254)
19 COG0418 PyrC Dihydroorotase [N 99.4 4.3E-11 9.3E-16 107.1 19.5 245 62-341 10-302 (344)
20 TIGR00856 pyrC_dimer dihydroor 99.4 4.7E-10 1E-14 106.1 25.9 232 95-341 21-299 (341)
21 cd01295 AdeC Adenine deaminase 99.2 7.8E-09 1.7E-13 100.8 22.5 230 61-341 10-253 (422)
22 PRK09875 putative hydrolase; P 99.1 3.7E-08 8.1E-13 90.8 20.7 259 59-341 5-292 (292)
23 PLN02599 dihydroorotase 99.0 2.1E-07 4.5E-12 88.6 23.3 228 100-341 46-321 (364)
24 KOG2902 Dihydroorotase [Nucleo 98.9 1.3E-07 2.8E-12 82.4 17.3 130 99-231 28-177 (344)
25 cd01307 Met_dep_hydrolase_B Me 98.7 5.7E-06 1.2E-10 78.4 22.7 173 150-341 117-295 (338)
26 cd01302 Cyclic_amidohydrolases 98.7 9.5E-06 2.1E-10 76.8 23.7 244 61-341 6-285 (337)
27 TIGR03583 EF_0837 probable ami 98.6 5.8E-06 1.3E-10 79.1 20.6 243 60-341 50-311 (365)
28 COG1831 Predicted metal-depend 98.6 9.1E-06 2E-10 72.2 18.9 236 58-341 3-281 (285)
29 PF01244 Peptidase_M19: Membra 98.6 1.4E-06 2.9E-11 81.8 14.2 267 58-341 4-319 (320)
30 PRK07583 cytosine deaminase-li 98.4 3.9E-05 8.5E-10 75.3 21.4 108 118-232 151-267 (438)
31 PRK07369 dihydroorotase; Provi 98.4 6.1E-05 1.3E-09 73.4 21.6 249 61-341 58-365 (418)
32 PRK07627 dihydroorotase; Provi 98.3 0.00024 5.2E-09 69.5 22.7 250 61-341 56-363 (425)
33 TIGR01975 isoAsp_dipep isoaspa 98.3 0.00013 2.9E-09 70.2 20.4 259 60-341 56-342 (389)
34 COG2355 Zn-dependent dipeptida 98.3 6.7E-05 1.4E-09 69.2 17.1 181 150-341 111-308 (313)
35 TIGR00857 pyrC_multi dihydroor 98.3 0.00025 5.5E-09 69.0 22.1 250 61-341 40-349 (411)
36 cd01297 D-aminoacylase D-amino 98.3 0.00015 3.3E-09 70.6 20.5 172 149-341 165-353 (415)
37 cd01317 DHOase_IIa Dihydroorot 98.2 0.0005 1.1E-08 66.1 23.4 150 61-231 15-195 (374)
38 PRK08417 dihydroorotase; Provi 98.2 0.0004 8.7E-09 67.0 22.0 245 61-341 31-333 (386)
39 PLN02795 allantoinase 98.2 0.00036 7.7E-09 69.7 21.7 256 61-341 100-426 (505)
40 PRK09059 dihydroorotase; Valid 98.2 0.00056 1.2E-08 66.9 22.4 250 60-341 60-368 (429)
41 cd01301 rDP_like renal dipepti 98.2 4.9E-05 1.1E-09 70.9 13.9 179 149-339 115-309 (309)
42 cd01299 Met_dep_hydrolase_A Me 98.1 0.0003 6.5E-09 66.5 18.9 171 146-341 119-312 (342)
43 TIGR01178 ade adenine deaminas 98.1 0.00043 9.2E-09 69.7 20.6 231 61-341 51-294 (552)
44 cd01318 DHOase_IIb Dihydroorot 98.1 0.00075 1.6E-08 64.6 21.1 244 61-341 7-305 (361)
45 PF02126 PTE: Phosphotriestera 98.1 0.00016 3.4E-09 67.4 15.9 262 58-341 4-308 (308)
46 PLN02942 dihydropyrimidinase 98.1 0.0021 4.6E-08 64.0 25.0 255 61-341 58-380 (486)
47 PRK09357 pyrC dihydroorotase; 98.1 0.0014 3.1E-08 63.9 22.9 249 61-341 54-362 (423)
48 PRK10657 isoaspartyl dipeptida 98.1 0.00065 1.4E-08 65.5 20.1 254 61-341 57-341 (388)
49 PRK12394 putative metallo-depe 98.1 0.0014 3.1E-08 63.0 22.4 175 150-341 141-319 (379)
50 cd01315 L-HYD_ALN L-Hydantoina 98.0 0.0014 3.1E-08 64.4 22.6 251 61-341 53-371 (447)
51 TIGR03178 allantoinase allanto 98.0 0.0013 2.8E-08 64.7 21.8 151 61-231 52-239 (443)
52 COG3964 Predicted amidohydrola 98.0 0.001 2.2E-08 60.5 18.7 242 61-340 58-317 (386)
53 PRK09237 dihydroorotase; Provi 98.0 0.0015 3.2E-08 62.9 21.5 244 61-341 54-314 (380)
54 PRK13404 dihydropyrimidinase; 98.0 0.0055 1.2E-07 60.9 25.4 256 61-341 55-383 (477)
55 TIGR02967 guan_deamin guanine 97.9 0.0024 5.2E-08 61.9 21.4 216 98-341 96-341 (401)
56 PRK08203 hydroxydechloroatrazi 97.9 0.0087 1.9E-07 59.0 24.9 218 98-341 111-369 (451)
57 cd01298 ATZ_TRZ_like TRZ/ATZ f 97.9 0.0037 7.9E-08 60.4 21.9 214 100-341 109-350 (411)
58 PRK02382 dihydroorotase; Provi 97.9 0.0032 6.9E-08 61.9 21.6 246 61-341 55-359 (443)
59 cd01308 Isoaspartyl-dipeptidas 97.8 0.0068 1.5E-07 58.4 22.6 153 178-341 166-340 (387)
60 cd01320 ADA Adenosine deaminas 97.7 0.019 4.2E-07 53.9 23.4 215 98-337 79-308 (325)
61 cd01303 GDEase Guanine deamina 97.7 0.04 8.7E-07 53.9 25.8 127 98-232 117-271 (429)
62 PRK13985 ureB urease subunit b 97.6 0.0015 3.2E-08 65.0 14.8 155 61-257 130-295 (568)
63 PRK13206 ureC urease subunit a 97.6 0.0012 2.6E-08 66.0 13.1 136 61-231 136-282 (573)
64 PRK08044 allantoinase; Provisi 97.5 0.017 3.8E-07 56.9 21.0 251 61-341 54-373 (449)
65 PRK13308 ureC urease subunit a 97.5 0.0026 5.6E-08 63.4 14.5 156 60-257 133-295 (569)
66 cd01316 CAD_DHOase The eukaryo 97.5 0.033 7.2E-07 52.9 21.7 245 61-341 7-279 (344)
67 PRK06189 allantoinase; Provisi 97.5 0.041 8.8E-07 54.3 23.2 250 61-341 55-371 (451)
68 cd01314 D-HYD D-hydantoinases 97.5 0.062 1.3E-06 52.8 24.1 52 148-201 131-182 (447)
69 COG1735 Php Predicted metal-de 97.5 0.0043 9.2E-08 56.7 14.1 223 103-341 59-313 (316)
70 PRK06687 chlorohydrolase; Vali 97.5 0.023 5.1E-07 55.4 20.6 105 98-204 109-219 (419)
71 cd00375 Urease_alpha Urease al 97.5 0.0036 7.8E-08 62.4 14.7 155 61-257 130-295 (567)
72 PRK13309 ureC urease subunit a 97.4 0.0034 7.4E-08 63.0 14.4 137 60-231 133-280 (572)
73 cd01293 Bact_CD Bacterial cyto 97.4 0.027 5.9E-07 54.0 20.4 133 97-232 101-244 (398)
74 TIGR01430 aden_deam adenosine 97.4 0.028 6.1E-07 52.8 19.7 156 161-340 156-311 (324)
75 PRK08393 N-ethylammeline chlor 97.4 0.081 1.8E-06 51.7 23.0 103 177-302 185-301 (424)
76 PRK05985 cytosine deaminase; P 97.3 0.027 5.9E-07 54.3 19.3 184 98-300 104-299 (391)
77 PRK12393 amidohydrolase; Provi 97.3 0.11 2.4E-06 51.3 23.9 143 176-341 213-373 (457)
78 PRK15493 5-methylthioadenosine 97.3 0.069 1.5E-06 52.4 21.9 217 98-341 110-353 (435)
79 COG0044 PyrC Dihydroorotase an 97.3 0.083 1.8E-06 51.7 21.7 248 61-341 54-360 (430)
80 PRK09060 dihydroorotase; Valid 97.3 0.078 1.7E-06 52.2 21.6 246 61-341 57-362 (444)
81 PRK07213 chlorohydrolase; Prov 97.2 0.1 2.2E-06 50.1 21.5 209 98-341 104-324 (375)
82 PRK08204 hypothetical protein; 97.2 0.16 3.4E-06 50.0 23.1 55 177-232 197-254 (449)
83 cd01309 Met_dep_hydrolase_C Me 97.2 0.0035 7.5E-08 59.9 11.0 141 179-341 178-318 (359)
84 PRK08323 phenylhydantoinase; V 97.1 0.32 6.9E-06 48.0 24.7 127 61-202 50-181 (459)
85 PRK09236 dihydroorotase; Revie 97.1 0.32 6.9E-06 47.9 24.8 248 61-341 55-366 (444)
86 PRK09358 adenosine deaminase; 97.1 0.19 4.2E-06 47.5 22.0 164 148-336 150-316 (340)
87 PRK13207 ureC urease subunit a 97.1 0.016 3.4E-07 58.2 14.4 72 149-228 202-273 (568)
88 PRK06846 putative deaminase; V 97.0 0.051 1.1E-06 52.9 17.0 184 96-300 118-314 (410)
89 PRK06038 N-ethylammeline chlor 96.9 0.38 8.3E-06 47.1 23.0 146 176-341 185-346 (430)
90 TIGR01792 urease_alph urease, 96.9 0.012 2.6E-07 59.0 12.5 155 61-257 129-294 (567)
91 PRK07228 N-ethylammeline chlor 96.9 0.49 1.1E-05 46.5 24.0 143 177-341 195-355 (445)
92 PRK07203 putative chlorohydrol 96.7 0.49 1.1E-05 46.5 22.0 127 99-232 115-265 (442)
93 PRK00369 pyrC dihydroorotase; 96.7 0.25 5.4E-06 47.8 19.4 230 61-341 48-316 (392)
94 TIGR02033 D-hydantoinase D-hyd 96.6 0.79 1.7E-05 45.0 24.6 129 61-202 52-184 (454)
95 PRK14085 imidazolonepropionase 96.6 0.55 1.2E-05 45.2 21.1 149 162-341 192-342 (382)
96 PRK10027 cryptic adenine deami 96.6 0.4 8.7E-06 48.8 20.3 228 61-341 85-328 (588)
97 cd00854 NagA N-acetylglucosami 96.5 0.83 1.8E-05 43.9 21.7 245 61-341 52-342 (374)
98 PRK09061 D-glutamate deacylase 96.4 0.028 6.1E-07 56.3 11.1 78 150-231 168-255 (509)
99 PRK07575 dihydroorotase; Provi 96.4 1.2 2.5E-05 43.9 22.9 246 61-341 57-360 (438)
100 PRK01211 dihydroorotase; Provi 96.2 1.3 2.8E-05 43.1 22.4 231 61-341 47-331 (409)
101 PRK03620 5-dehydro-4-deoxygluc 96.2 0.19 4.2E-06 46.8 14.8 129 94-227 30-165 (303)
102 PRK06380 metal-dependent hydro 96.2 1.4 3E-05 42.9 24.3 123 98-232 104-246 (418)
103 PRK06886 hypothetical protein; 96.1 1.3 2.7E-05 41.9 23.7 108 121-232 101-217 (329)
104 PRK09228 guanine deaminase; Pr 96.1 1.6 3.4E-05 42.9 22.9 216 98-341 121-366 (433)
105 PRK07572 cytosine deaminase; V 96.1 1.6 3.4E-05 42.7 21.3 51 181-232 191-246 (426)
106 cd00951 KDGDH 5-dehydro-4-deox 96.0 0.27 5.8E-06 45.5 14.6 126 93-223 22-154 (289)
107 PRK08392 hypothetical protein; 96.0 0.47 1E-05 41.9 15.4 35 63-113 1-35 (215)
108 PLN02303 urease 96.0 0.05 1.1E-06 56.5 10.2 47 150-202 472-518 (837)
109 TIGR03249 KdgD 5-dehydro-4-deo 95.9 0.31 6.6E-06 45.3 14.7 129 94-227 28-163 (296)
110 cd01304 FMDH_A Formylmethanofu 95.9 1.1 2.3E-05 45.0 18.7 158 182-341 210-445 (541)
111 TIGR02313 HpaI-NOT-DapA 2,4-di 95.8 0.37 8.1E-06 44.7 14.7 130 93-226 22-162 (294)
112 PTZ00124 adenosine deaminase; 95.7 0.9 2E-05 43.5 16.9 163 149-336 179-343 (362)
113 cd00953 KDG_aldolase KDG (2-ke 95.5 0.46 9.9E-06 43.8 14.0 126 93-224 21-154 (279)
114 cd01300 YtcJ_like YtcJ_like me 95.5 0.084 1.8E-06 52.4 9.6 150 178-341 292-461 (479)
115 cd01296 Imidazolone-5PH Imidaz 95.4 0.53 1.2E-05 44.9 14.4 152 159-341 175-328 (371)
116 TIGR02318 phosphono_phnM phosp 95.2 3.1 6.7E-05 40.0 20.1 55 279-341 284-338 (376)
117 COG0804 UreC Urea amidohydrola 95.1 0.56 1.2E-05 44.7 12.9 132 61-228 130-273 (568)
118 cd00408 DHDPS-like Dihydrodipi 94.9 1.2 2.5E-05 40.9 14.8 126 93-223 19-154 (281)
119 PRK09045 N-ethylammeline chlor 94.9 2.3 4.9E-05 41.8 17.6 143 176-341 197-358 (443)
120 cd00443 ADA_AMPD Adenosine/AMP 94.8 3.4 7.4E-05 38.5 19.3 151 161-336 135-287 (305)
121 PF00701 DHDPS: Dihydrodipicol 94.8 0.68 1.5E-05 42.7 12.9 128 94-226 24-161 (289)
122 KOG2584 Dihydroorotase and rel 94.8 0.28 6.1E-06 47.1 10.1 62 140-203 139-200 (522)
123 PLN02417 dihydrodipicolinate s 94.7 0.78 1.7E-05 42.2 13.0 126 94-225 24-158 (280)
124 cd00952 CHBPH_aldolase Trans-o 94.6 0.91 2E-05 42.4 13.4 128 93-225 30-168 (309)
125 cd00950 DHDPS Dihydrodipicolin 94.4 1.5 3.3E-05 40.3 14.3 125 94-223 23-157 (284)
126 PRK09230 cytosine deaminase; P 94.4 0.74 1.6E-05 45.1 12.7 53 180-232 194-250 (426)
127 TIGR01224 hutI imidazoloneprop 94.3 1.3 2.7E-05 42.4 14.1 150 161-341 181-332 (377)
128 PRK15446 phosphonate metabolis 94.2 5.7 0.00012 38.3 22.2 54 279-341 289-342 (383)
129 COG1001 AdeC Adenine deaminase 94.2 3.8 8.2E-05 41.2 16.9 226 61-341 78-321 (584)
130 PRK03170 dihydrodipicolinate s 94.2 2 4.2E-05 39.8 14.5 129 93-226 23-161 (292)
131 PRK04147 N-acetylneuraminate l 94.0 1.9 4.1E-05 39.9 13.9 130 93-227 25-165 (293)
132 cd00954 NAL N-Acetylneuraminic 94.0 2.5 5.3E-05 39.1 14.7 128 93-225 22-161 (288)
133 TIGR00674 dapA dihydrodipicoli 93.9 2.6 5.7E-05 38.8 14.6 125 93-222 20-154 (285)
134 cd00945 Aldolase_Class_I Class 93.7 2 4.3E-05 36.7 12.9 127 93-231 14-152 (201)
135 KOG4127 Renal dipeptidase [Pos 93.2 1.1 2.3E-05 42.2 10.4 207 121-341 140-389 (419)
136 TIGR03234 OH-pyruv-isom hydrox 93.1 4.8 0.0001 36.1 14.8 134 92-227 14-177 (254)
137 TIGR00221 nagA N-acetylglucosa 93.1 8.7 0.00019 37.0 22.8 243 61-341 57-347 (380)
138 PRK15108 biotin synthase; Prov 92.7 9.3 0.0002 36.3 17.7 225 92-336 76-323 (345)
139 cd01313 Met_dep_hydrolase_E Me 92.7 10 0.00023 36.9 17.6 51 177-232 203-266 (418)
140 COG1574 Predicted metal-depend 92.7 1.1 2.3E-05 45.2 10.6 152 178-340 318-484 (535)
141 PRK00912 ribonuclease P protei 92.6 7.3 0.00016 34.8 16.3 210 60-340 1-214 (237)
142 COG0329 DapA Dihydrodipicolina 92.5 3.9 8.4E-05 38.1 13.5 126 93-223 26-161 (299)
143 PRK07328 histidinol-phosphatas 92.2 8.9 0.00019 34.9 17.9 39 60-113 1-39 (269)
144 TIGR00683 nanA N-acetylneurami 92.2 5.6 0.00012 36.8 14.2 125 94-223 23-159 (290)
145 cd01305 archeal_chlorohydrolas 92.2 8.6 0.00019 34.7 15.9 166 98-301 58-225 (263)
146 PF02614 UxaC: Glucuronate iso 91.1 1.5 3.3E-05 43.2 9.6 141 182-340 277-462 (462)
147 TIGR00683 nanA N-acetylneurami 90.8 8.6 0.00019 35.5 13.9 128 151-297 25-188 (290)
148 PF10566 Glyco_hydro_97: Glyco 90.8 1.7 3.7E-05 39.7 8.9 117 94-222 34-171 (273)
149 PRK06151 N-ethylammeline chlor 90.6 5.5 0.00012 39.7 13.2 153 176-341 216-382 (488)
150 PRK08609 hypothetical protein; 89.3 22 0.00047 36.3 16.4 37 61-113 334-370 (570)
151 cd00954 NAL N-Acetylneuraminic 89.2 8.3 0.00018 35.5 12.4 128 151-297 25-189 (288)
152 PRK04250 dihydroorotase; Provi 89.2 22 0.00049 34.4 22.0 240 61-341 48-325 (398)
153 TIGR03121 one_C_dehyd_A formyl 88.8 7.8 0.00017 39.2 12.5 158 182-341 214-448 (556)
154 PRK11170 nagA N-acetylglucosam 88.8 23 0.00051 34.1 23.7 246 61-341 54-344 (382)
155 cd01312 Met_dep_hydrolase_D Me 88.0 26 0.00057 33.7 23.0 29 176-204 158-186 (381)
156 cd00952 CHBPH_aldolase Trans-o 87.7 12 0.00026 35.0 12.5 105 151-262 33-172 (309)
157 PRK09356 imidazolonepropionase 87.4 28 0.00061 33.5 15.4 152 161-341 206-358 (406)
158 cd01306 PhnM PhnM is believed 87.4 26 0.00057 33.0 19.5 209 100-341 36-291 (325)
159 PF09370 TIM-br_sig_trns: TIM- 87.3 6.2 0.00013 35.8 9.7 126 97-233 27-182 (268)
160 TIGR02313 HpaI-NOT-DapA 2,4-di 87.0 18 0.00038 33.5 13.1 128 151-297 25-189 (294)
161 PRK07945 hypothetical protein; 86.3 31 0.00066 32.7 16.8 40 58-113 93-132 (335)
162 PRK09997 hydroxypyruvate isome 86.0 25 0.00055 31.5 15.5 134 92-227 15-178 (258)
163 cd00408 DHDPS-like Dihydrodipi 86.0 17 0.00036 33.2 12.4 127 151-297 22-184 (281)
164 cd01321 ADGF Adenosine deamina 85.9 32 0.0007 32.6 18.7 152 161-333 162-321 (345)
165 PF03102 NeuB: NeuB family; I 85.2 7.6 0.00017 34.9 9.3 118 121-262 58-179 (241)
166 PRK08418 chlorohydrolase; Prov 83.8 44 0.00095 32.4 23.3 29 176-204 185-213 (408)
167 PRK13209 L-xylulose 5-phosphat 83.7 34 0.00074 31.0 15.5 136 92-227 21-187 (283)
168 TIGR03569 NeuB_NnaB N-acetylne 83.3 14 0.00031 34.8 10.6 163 122-317 79-254 (329)
169 PRK12330 oxaloacetate decarbox 83.2 28 0.0006 34.9 13.0 106 95-204 100-210 (499)
170 PRK09989 hypothetical protein; 83.0 35 0.00075 30.6 14.9 134 92-227 15-178 (258)
171 PF04273 DUF442: Putative phos 82.4 6 0.00013 30.9 6.6 19 179-197 42-60 (110)
172 PRK09229 N-formimino-L-glutama 81.2 58 0.0013 32.0 17.3 54 177-232 212-275 (456)
173 PRK14042 pyruvate carboxylase 79.7 36 0.00077 34.9 12.7 106 95-204 99-207 (596)
174 PRK14040 oxaloacetate decarbox 78.3 44 0.00094 34.3 12.9 106 95-204 100-208 (593)
175 PRK09856 fructoselysine 3-epim 77.6 54 0.0012 29.5 15.4 134 92-227 13-181 (275)
176 COG0402 SsnA Cytosine deaminas 77.4 61 0.0013 31.5 13.4 127 97-232 108-258 (421)
177 TIGR03314 Se_ssnA putative sel 76.5 80 0.0017 30.9 14.5 126 100-232 115-264 (441)
178 cd03174 DRE_TIM_metallolyase D 76.4 54 0.0012 29.3 12.0 132 95-234 22-174 (265)
179 PRK14041 oxaloacetate decarbox 76.4 49 0.0011 32.9 12.3 107 94-204 97-206 (467)
180 TIGR03586 PseI pseudaminic aci 76.4 27 0.00058 33.0 10.1 76 142-234 96-174 (327)
181 PRK13210 putative L-xylulose 5 76.3 60 0.0013 29.3 13.7 136 92-227 16-182 (284)
182 PF01261 AP_endonuc_2: Xylose 76.2 38 0.00083 28.6 10.6 70 158-227 81-164 (213)
183 PRK06361 hypothetical protein; 75.7 53 0.0011 28.5 14.8 134 183-341 74-209 (212)
184 PRK01060 endonuclease IV; Prov 75.0 65 0.0014 29.1 15.2 134 93-227 13-179 (281)
185 cd00019 AP2Ec AP endonuclease 73.5 71 0.0015 28.9 14.0 136 92-227 10-176 (279)
186 PF02548 Pantoate_transf: Keto 73.4 52 0.0011 29.9 10.7 94 99-203 30-140 (261)
187 PF07969 Amidohydro_3: Amidohy 72.5 9.8 0.00021 36.5 6.4 51 179-232 223-273 (404)
188 PLN02424 ketopantoate hydroxym 71.9 39 0.00085 31.8 9.8 94 99-202 49-159 (332)
189 COG0159 TrpA Tryptophan syntha 71.7 81 0.0017 28.8 11.7 51 93-147 110-160 (265)
190 TIGR01431 adm_rel adenosine de 71.7 1.1E+02 0.0024 30.5 19.1 188 95-302 200-416 (479)
191 PRK12581 oxaloacetate decarbox 71.7 89 0.0019 31.1 12.7 105 95-204 108-216 (468)
192 COG0413 PanB Ketopantoate hydr 71.5 39 0.00084 30.6 9.2 94 99-203 29-139 (268)
193 PRK13111 trpA tryptophan synth 70.7 83 0.0018 28.6 11.6 114 92-217 104-220 (258)
194 PRK04147 N-acetylneuraminate l 70.5 77 0.0017 29.2 11.6 51 151-203 28-82 (293)
195 PRK08195 4-hyroxy-2-oxovalerat 70.5 98 0.0021 29.3 12.6 43 158-204 154-199 (337)
196 TIGR01496 DHPS dihydropteroate 69.9 51 0.0011 29.9 10.0 83 147-231 23-128 (257)
197 PRK03170 dihydrodipicolinate s 69.8 91 0.002 28.6 12.1 127 151-297 26-188 (292)
198 COG5016 Pyruvate/oxaloacetate 69.8 98 0.0021 30.1 11.9 104 95-203 101-208 (472)
199 PLN02591 tryptophan synthase 69.8 86 0.0019 28.3 11.9 98 93-199 94-194 (250)
200 CHL00200 trpA tryptophan synth 69.7 89 0.0019 28.5 11.7 99 93-199 107-207 (263)
201 TIGR00676 fadh2 5,10-methylene 69.6 80 0.0017 28.8 11.4 103 93-202 74-191 (272)
202 COG0276 HemH Protoheme ferro-l 69.5 38 0.00083 31.8 9.2 74 92-166 102-186 (320)
203 PRK12331 oxaloacetate decarbox 68.6 1.1E+02 0.0025 30.1 12.8 107 94-204 98-207 (448)
204 cd00950 DHDPS Dihydrodipicolin 68.5 60 0.0013 29.6 10.4 51 151-203 25-78 (284)
205 COG3453 Uncharacterized protei 68.4 23 0.0005 28.2 6.3 42 152-197 20-61 (130)
206 COG2089 SpsE Sialic acid synth 68.2 58 0.0013 30.6 9.9 106 140-262 107-213 (347)
207 PRK08123 histidinol-phosphatas 68.2 37 0.00081 30.9 8.9 40 60-113 1-40 (270)
208 TIGR00674 dapA dihydrodipicoli 68.0 61 0.0013 29.7 10.4 127 151-297 23-185 (285)
209 PF00962 A_deaminase: Adenosin 67.6 1.1E+02 0.0023 28.6 12.2 136 146-302 146-285 (331)
210 PF00290 Trp_syntA: Tryptophan 67.5 99 0.0021 28.1 11.5 113 93-216 103-217 (259)
211 PF03932 CutC: CutC family; I 67.3 29 0.00063 30.3 7.5 131 93-232 9-151 (201)
212 TIGR01108 oadA oxaloacetate de 67.2 1.1E+02 0.0024 31.4 12.7 106 94-204 93-202 (582)
213 PRK09282 pyruvate carboxylase 67.1 1E+02 0.0022 31.7 12.5 106 94-204 98-207 (592)
214 COG3142 CutC Uncharacterized p 67.0 40 0.00086 30.0 8.2 141 99-251 15-168 (241)
215 COG3453 Uncharacterized protei 66.2 40 0.00087 26.8 7.3 74 122-204 19-97 (130)
216 TIGR03217 4OH_2_O_val_ald 4-hy 66.2 1.2E+02 0.0026 28.7 12.4 43 158-204 153-198 (333)
217 cd07944 DRE_TIM_HOA_like 4-hyd 65.9 1.1E+02 0.0023 27.9 12.1 36 158-197 119-154 (266)
218 PF04273 DUF442: Putative phos 65.1 27 0.00059 27.2 6.3 76 122-204 18-96 (110)
219 PRK09248 putative hydrolase; V 64.6 1E+02 0.0023 27.4 11.1 38 61-113 3-40 (246)
220 COG0106 HisA Phosphoribosylfor 63.0 1.2E+02 0.0025 27.4 13.2 117 93-218 86-212 (241)
221 PRK01060 endonuclease IV; Prov 62.5 93 0.002 28.1 10.5 116 148-264 47-184 (281)
222 PF00682 HMGL-like: HMGL-like 62.3 52 0.0011 29.1 8.5 136 94-234 16-165 (237)
223 TIGR02022 hutF formiminoglutam 61.2 1.7E+02 0.0037 28.8 18.1 51 177-232 212-275 (455)
224 TIGR01019 sucCoAalpha succinyl 61.2 1.3E+02 0.0028 27.8 11.0 125 95-231 77-208 (286)
225 TIGR03249 KdgD 5-dehydro-4-deo 61.0 25 0.00053 32.6 6.4 69 96-168 90-164 (296)
226 KOG2931 Differentiation-relate 60.6 25 0.00055 32.5 6.0 51 92-145 107-157 (326)
227 PF07071 DUF1341: Protein of u 60.5 60 0.0013 28.3 8.0 75 150-231 137-212 (218)
228 smart00518 AP2Ec AP endonuclea 60.1 53 0.0011 29.6 8.3 81 148-230 45-142 (273)
229 cd07940 DRE_TIM_IPMS 2-isoprop 60.1 1.3E+02 0.0029 27.1 11.4 135 93-234 21-171 (268)
230 cd07939 DRE_TIM_NifV Streptomy 60.0 1.3E+02 0.0029 27.0 11.7 132 95-234 23-167 (259)
231 PRK13813 orotidine 5'-phosphat 59.6 72 0.0016 27.7 8.8 86 61-169 56-147 (215)
232 TIGR01856 hisJ_fam histidinol 58.6 45 0.00097 30.0 7.5 36 63-113 1-36 (253)
233 PRK11572 copper homeostasis pr 58.5 74 0.0016 28.7 8.6 125 101-232 17-152 (248)
234 COG1167 ARO8 Transcriptional r 58.3 33 0.00072 33.9 7.1 59 141-199 206-265 (459)
235 PF07905 PucR: Purine cataboli 57.9 42 0.0009 26.5 6.4 65 131-202 41-107 (123)
236 PRK13396 3-deoxy-7-phosphohept 57.6 98 0.0021 29.5 9.7 105 184-298 198-309 (352)
237 PF00532 Peripla_BP_1: Peripla 57.4 36 0.00078 31.0 6.8 127 94-227 45-186 (279)
238 cd00537 MTHFR Methylenetetrahy 56.4 1.3E+02 0.0028 27.3 10.3 102 93-202 74-194 (274)
239 TIGR00542 hxl6Piso_put hexulos 56.3 1.5E+02 0.0034 26.7 15.4 137 92-228 16-183 (279)
240 PRK05678 succinyl-CoA syntheta 56.1 1.3E+02 0.0028 27.8 10.2 125 95-231 79-210 (291)
241 PRK03620 5-dehydro-4-deoxygluc 56.0 34 0.00073 31.8 6.4 69 96-168 92-166 (303)
242 PF07745 Glyco_hydro_53: Glyco 55.8 70 0.0015 30.3 8.4 191 98-302 9-243 (332)
243 PLN02522 ATP citrate (pro-S)-l 54.7 1.5E+02 0.0033 30.5 11.1 52 93-144 91-145 (608)
244 PRK09432 metF 5,10-methylenete 54.5 1.2E+02 0.0027 28.0 9.8 115 93-215 98-223 (296)
245 PRK08673 3-deoxy-7-phosphohept 54.4 2E+02 0.0043 27.3 11.2 104 184-298 190-300 (335)
246 cd03174 DRE_TIM_metallolyase D 53.7 1.6E+02 0.0035 26.1 11.3 131 92-231 51-199 (265)
247 cd00951 KDGDH 5-dehydro-4-deox 53.5 1.8E+02 0.0039 26.7 12.3 122 152-296 26-183 (289)
248 cd07937 DRE_TIM_PC_TC_5S Pyruv 53.4 1.8E+02 0.0039 26.5 12.9 20 178-197 146-165 (275)
249 COG1228 HutI Imidazolonepropio 52.8 2.3E+02 0.005 27.6 12.6 138 175-341 214-354 (406)
250 PRK10076 pyruvate formate lyas 52.6 1.6E+02 0.0035 25.8 11.1 19 95-113 57-75 (213)
251 PF13147 Amidohydro_4: Amidohy 51.7 53 0.0011 29.1 6.9 61 278-341 227-287 (304)
252 KOG1097 Adenine deaminase/aden 51.1 2.4E+02 0.0052 27.3 18.5 125 159-302 208-333 (399)
253 COG1922 WecG Teichoic acid bio 50.7 28 0.00062 31.5 4.7 97 181-297 95-194 (253)
254 TIGR02717 AcCoA-syn-alpha acet 50.4 1.8E+02 0.0039 28.7 10.7 127 93-231 76-213 (447)
255 TIGR01244 conserved hypothetic 50.3 57 0.0012 26.2 6.1 27 178-204 70-96 (135)
256 COG1904 UxaC Glucuronate isome 50.1 7.8 0.00017 37.4 1.1 54 56-113 21-75 (463)
257 PRK12595 bifunctional 3-deoxy- 49.5 1.3E+02 0.0029 28.7 9.4 147 122-298 172-325 (360)
258 TIGR00423 radical SAM domain p 49.4 1.1E+02 0.0023 28.5 8.6 118 92-212 36-176 (309)
259 PF03096 Ndr: Ndr family; Int 49.3 13 0.00027 34.3 2.3 48 95-145 87-134 (283)
260 PLN02417 dihydrodipicolinate s 49.2 2.1E+02 0.0046 26.1 11.6 51 151-203 26-79 (280)
261 TIGR03849 arch_ComA phosphosul 48.4 2E+02 0.0044 25.7 10.2 46 152-202 76-121 (237)
262 TIGR00262 trpA tryptophan synt 48.3 2.1E+02 0.0046 25.8 20.4 179 95-298 27-230 (256)
263 PRK10128 2-keto-3-deoxy-L-rham 46.8 1.3E+02 0.0028 27.5 8.5 73 147-226 155-235 (267)
264 PRK05835 fructose-bisphosphate 46.1 2.3E+02 0.005 26.5 10.0 75 179-263 26-108 (307)
265 cd04724 Tryptophan_synthase_al 45.3 2.2E+02 0.0049 25.3 11.6 98 94-199 93-192 (242)
266 TIGR02090 LEU1_arch isopropylm 45.2 2.7E+02 0.0058 26.6 10.8 101 95-203 25-134 (363)
267 PTZ00372 endonuclease 4-like p 45.1 1.4E+02 0.0031 29.1 8.8 134 93-228 142-309 (413)
268 cd00945 Aldolase_Class_I Class 44.6 1.9E+02 0.004 24.2 10.6 76 94-170 67-151 (201)
269 PRK07114 keto-hydroxyglutarate 44.6 2.2E+02 0.0047 25.3 9.3 91 92-192 120-211 (222)
270 PF01791 DeoC: DeoC/LacD famil 44.6 51 0.0011 29.2 5.5 101 93-202 20-133 (236)
271 PRK02261 methylaspartate mutas 44.5 1.5E+02 0.0033 24.0 7.7 106 100-218 26-132 (137)
272 PRK09257 aromatic amino acid a 44.2 2.4E+02 0.0053 26.9 10.5 28 173-200 184-211 (396)
273 PF00701 DHDPS: Dihydrodipicol 43.3 2.3E+02 0.0049 25.9 9.7 126 152-297 27-188 (289)
274 TIGR00222 panB 3-methyl-2-oxob 42.8 56 0.0012 29.8 5.4 48 146-203 91-138 (263)
275 PF06180 CbiK: Cobalt chelatas 42.2 2.7E+02 0.0058 25.4 11.7 122 92-217 58-193 (262)
276 TIGR02660 nifV_homocitr homoci 42.0 3.2E+02 0.0068 26.1 13.1 101 95-203 26-135 (365)
277 PF00155 Aminotran_1_2: Aminot 42.0 1.8E+02 0.004 27.0 9.2 25 175-199 162-186 (363)
278 COG4464 CapC Capsular polysacc 41.8 54 0.0012 29.0 4.8 37 63-113 2-41 (254)
279 TIGR01361 DAHP_synth_Bsub phos 41.8 1.6E+02 0.0034 26.8 8.2 103 184-298 122-232 (260)
280 KOG3968 Atrazine chlorohydrola 41.5 66 0.0014 31.3 5.8 105 95-203 123-242 (439)
281 COG4981 Enoyl reductase domain 41.4 63 0.0014 32.5 5.7 69 149-226 139-218 (717)
282 TIGR00612 ispG_gcpE 1-hydroxy- 40.9 2E+02 0.0044 27.2 8.8 90 98-202 40-129 (346)
283 COG1168 MalY Bifunctional PLP- 40.9 1.8E+02 0.0038 28.1 8.4 51 150-201 147-201 (388)
284 PRK08508 biotin synthase; Prov 40.8 2.9E+02 0.0062 25.2 10.7 114 92-211 40-167 (279)
285 PF02811 PHP: PHP domain; Int 40.7 46 0.001 27.3 4.4 54 63-131 1-54 (175)
286 COG0329 DapA Dihydrodipicolina 40.7 3E+02 0.0065 25.5 11.0 54 149-203 26-82 (299)
287 PF05913 DUF871: Bacterial pro 40.6 2.7E+02 0.0058 26.6 9.9 181 95-299 17-224 (357)
288 PF01136 Peptidase_U32: Peptid 40.5 2.5E+02 0.0054 24.5 9.8 86 94-202 4-92 (233)
289 PRK02308 uvsE putative UV dama 40.3 85 0.0019 29.2 6.4 68 158-227 140-211 (303)
290 COG1387 HIS2 Histidinol phosph 39.9 2.7E+02 0.0059 24.8 15.6 36 62-113 2-37 (237)
291 PRK11858 aksA trans-homoaconit 39.9 3.5E+02 0.0075 26.0 11.6 52 149-204 146-198 (378)
292 PF13147 Amidohydro_4: Amidohy 39.9 85 0.0018 27.7 6.3 95 95-201 34-129 (304)
293 PRK12738 kbaY tagatose-bisphos 39.8 2.8E+02 0.006 25.7 9.5 24 180-203 28-51 (286)
294 PRK00915 2-isopropylmalate syn 39.4 3.5E+02 0.0076 27.2 11.0 44 96-139 30-74 (513)
295 PRK02925 glucuronate isomerase 39.3 12 0.00026 36.8 0.6 52 57-112 23-75 (466)
296 PLN02433 uroporphyrinogen deca 39.1 1.9E+02 0.0041 27.3 8.7 74 124-198 265-342 (345)
297 TIGR01235 pyruv_carbox pyruvat 39.1 6E+02 0.013 28.5 14.5 106 95-204 628-742 (1143)
298 PRK13802 bifunctional indole-3 39.1 4.9E+02 0.011 27.4 12.5 129 92-233 70-222 (695)
299 COG0648 Nfo Endonuclease IV [D 38.6 2.4E+02 0.0051 26.0 8.8 134 93-229 15-177 (280)
300 PRK06252 methylcobalamin:coenz 38.5 2.2E+02 0.0048 26.6 9.1 90 95-195 243-338 (339)
301 PRK13671 hypothetical protein; 38.2 76 0.0017 29.5 5.6 88 208-301 16-106 (298)
302 PRK12999 pyruvate carboxylase; 38.1 5.1E+02 0.011 29.1 12.8 106 95-204 630-744 (1146)
303 COG0134 TrpC Indole-3-glycerol 37.9 3.1E+02 0.0068 24.9 15.0 168 91-297 65-238 (254)
304 CHL00200 trpA tryptophan synth 37.8 3.2E+02 0.0068 24.9 19.1 178 94-298 31-234 (263)
305 PF13407 Peripla_BP_4: Peripla 37.7 1.4E+02 0.0031 26.0 7.3 16 184-199 70-85 (257)
306 TIGR03581 EF_0839 conserved hy 37.6 1.3E+02 0.0028 26.6 6.5 76 150-232 137-213 (236)
307 cd06533 Glyco_transf_WecG_TagA 37.6 1.1E+02 0.0023 25.8 6.1 51 180-232 32-83 (171)
308 PRK08195 4-hyroxy-2-oxovalerat 37.5 3.6E+02 0.0078 25.5 13.5 97 94-201 27-135 (337)
309 PF03808 Glyco_tran_WecB: Glyc 37.5 1.1E+02 0.0023 25.8 6.1 51 180-232 34-85 (172)
310 PLN02389 biotin synthase 37.4 3.9E+02 0.0084 25.8 17.4 114 92-210 116-242 (379)
311 TIGR00735 hisF imidazoleglycer 37.3 3.1E+02 0.0066 24.6 9.9 95 92-197 155-253 (254)
312 COG0621 MiaB 2-methylthioadeni 37.3 2.3E+02 0.005 27.9 9.0 140 146-292 175-329 (437)
313 cd00423 Pterin_binding Pterin 36.7 3.2E+02 0.0069 24.6 10.8 83 147-231 24-130 (258)
314 cd00958 DhnA Class I fructose- 36.6 94 0.002 27.4 5.9 102 91-202 20-130 (235)
315 TIGR01212 radical SAM protein, 36.5 3.5E+02 0.0076 25.0 12.8 82 123-206 98-188 (302)
316 cd06557 KPHMT-like Ketopantoat 36.5 70 0.0015 29.0 5.0 48 146-203 89-136 (254)
317 PTZ00376 aspartate aminotransf 36.4 3.4E+02 0.0075 25.9 10.3 28 173-200 188-215 (404)
318 PF13594 Amidohydro_5: Amidohy 36.2 19 0.00042 25.0 1.1 10 61-70 35-44 (68)
319 cd07944 DRE_TIM_HOA_like 4-hyd 36.2 3.3E+02 0.0072 24.7 14.2 130 94-234 22-166 (266)
320 PRK12857 fructose-1,6-bisphosp 36.0 3.3E+02 0.0071 25.1 9.4 24 180-203 28-51 (284)
321 PF12897 Aminotran_MocR: Alani 35.9 3.2E+02 0.0069 26.6 9.3 118 181-298 132-253 (425)
322 PRK00366 ispG 4-hydroxy-3-meth 35.8 2.4E+02 0.0051 27.0 8.4 89 98-201 48-137 (360)
323 TIGR01858 tag_bisphos_ald clas 35.7 2.7E+02 0.0059 25.7 8.8 25 179-203 25-49 (282)
324 PF00290 Trp_syntA: Tryptophan 35.2 3.5E+02 0.0075 24.6 16.8 178 95-298 27-229 (259)
325 TIGR02660 nifV_homocitr homoci 35.1 4E+02 0.0088 25.4 11.4 104 95-204 75-195 (365)
326 PF03659 Glyco_hydro_71: Glyco 35.1 2.4E+02 0.0051 27.3 8.7 72 145-220 15-88 (386)
327 PLN02231 alanine transaminase 34.8 3.6E+02 0.0077 27.3 10.3 51 150-201 255-311 (534)
328 cd03465 URO-D_like The URO-D _ 34.6 2.2E+02 0.0048 26.3 8.4 68 123-191 254-329 (330)
329 TIGR03822 AblA_like_2 lysine-2 34.4 3.9E+02 0.0085 25.0 13.4 119 94-219 124-257 (321)
330 PRK07709 fructose-bisphosphate 34.3 1.7E+02 0.0037 27.0 7.2 24 180-203 28-51 (285)
331 PRK06552 keto-hydroxyglutarate 34.2 3.2E+02 0.007 23.9 9.1 69 92-171 117-186 (213)
332 TIGR01521 FruBisAldo_II_B fruc 34.0 2.2E+02 0.0047 27.2 8.0 75 179-263 25-107 (347)
333 cd00947 TBP_aldolase_IIB Tagat 34.0 2E+02 0.0044 26.4 7.7 20 182-201 25-44 (276)
334 cd06285 PBP1_LacI_like_7 Ligan 34.0 3.2E+02 0.0069 23.8 11.4 129 94-230 44-184 (265)
335 PLN02397 aspartate transaminas 33.7 4.5E+02 0.0097 25.4 11.1 40 161-200 194-233 (423)
336 PLN02368 alanine transaminase 33.6 4.3E+02 0.0094 25.5 10.4 39 161-200 210-249 (407)
337 cd07941 DRE_TIM_LeuA3 Desulfob 33.5 3.7E+02 0.008 24.4 12.5 140 94-234 22-179 (273)
338 PRK00311 panB 3-methyl-2-oxobu 33.3 1.1E+02 0.0023 28.0 5.7 47 147-203 93-139 (264)
339 PRK09461 ansA cytoplasmic aspa 33.3 1.9E+02 0.0041 27.4 7.6 48 151-201 224-271 (335)
340 COG1608 Predicted archaeal kin 33.2 56 0.0012 29.4 3.7 41 253-301 133-174 (252)
341 COG3589 Uncharacterized conser 33.2 95 0.0021 29.3 5.3 124 94-235 18-151 (360)
342 COG1082 IolE Sugar phosphate i 33.1 2.2E+02 0.0048 25.3 7.9 72 157-232 24-108 (274)
343 PRK08175 aminotransferase; Val 32.8 1.6E+02 0.0036 28.0 7.3 50 150-200 151-203 (395)
344 cd07948 DRE_TIM_HCS Saccharomy 32.7 3.8E+02 0.0082 24.3 11.5 132 95-234 25-169 (262)
345 PLN02607 1-aminocyclopropane-1 32.6 3.8E+02 0.0082 26.3 9.9 40 161-201 200-240 (447)
346 PRK07094 biotin synthase; Prov 32.6 4.1E+02 0.0088 24.6 15.0 121 93-219 71-207 (323)
347 PRK13398 3-deoxy-7-phosphohept 32.3 3.7E+02 0.008 24.5 9.1 55 149-203 42-100 (266)
348 COG1830 FbaB DhnA-type fructos 32.2 63 0.0014 29.4 3.9 102 91-202 42-151 (265)
349 COG3977 Alanine-alpha-ketoisov 32.1 1.1E+02 0.0024 28.6 5.4 41 165-205 183-223 (417)
350 TIGR00587 nfo apurinic endonuc 32.0 1.8E+02 0.004 26.3 7.2 79 150-231 14-111 (274)
351 COG1879 RbsB ABC-type sugar tr 32.0 2.9E+02 0.0063 25.3 8.7 45 149-202 80-124 (322)
352 cd06278 PBP1_LacI_like_2 Ligan 31.8 3.4E+02 0.0074 23.5 11.9 129 94-229 43-182 (266)
353 KOG2949 Ketopantoate hydroxyme 31.6 1.9E+02 0.0041 25.8 6.6 94 100-203 53-163 (306)
354 PRK06290 aspartate aminotransf 31.6 4.8E+02 0.01 25.2 10.4 49 150-200 169-218 (410)
355 PRK12858 tagatose 1,6-diphosph 31.4 68 0.0015 30.4 4.2 47 153-200 112-162 (340)
356 PRK08645 bifunctional homocyst 31.3 6E+02 0.013 26.2 14.4 117 95-222 399-543 (612)
357 cd07033 TPP_PYR_DXS_TK_like Py 31.1 3E+02 0.0064 22.5 8.6 93 123-226 29-129 (156)
358 COG1744 Med Uncharacterized AB 30.9 1.2E+02 0.0025 28.9 5.8 50 179-231 82-131 (345)
359 PRK12737 gatY tagatose-bisphos 30.7 3.8E+02 0.0081 24.8 8.9 22 181-202 29-50 (284)
360 PLN02727 NAD kinase 30.6 2.1E+02 0.0045 31.1 7.8 76 150-232 271-351 (986)
361 PRK09195 gatY tagatose-bisphos 30.3 3.4E+02 0.0073 25.1 8.5 24 180-203 28-51 (284)
362 PF02608 Bmp: Basic membrane p 30.3 99 0.0021 28.6 5.1 74 149-231 21-95 (306)
363 TIGR00696 wecB_tagA_cpsF bacte 30.2 1.1E+02 0.0024 26.0 4.9 49 180-231 34-83 (177)
364 cd06290 PBP1_LacI_like_9 Ligan 29.7 3.8E+02 0.0082 23.3 10.1 128 94-227 44-182 (265)
365 PRK09250 fructose-bisphosphate 29.5 60 0.0013 30.8 3.4 101 92-202 91-200 (348)
366 PRK08610 fructose-bisphosphate 29.5 1.7E+02 0.0038 27.0 6.4 24 180-203 28-51 (286)
367 COG1646 Predicted phosphate-bi 29.4 2.1E+02 0.0046 25.6 6.6 61 137-203 18-79 (240)
368 PF14871 GHL6: Hypothetical gl 29.4 1.2E+02 0.0026 24.5 4.8 46 178-230 41-86 (132)
369 PRK13355 bifunctional HTH-doma 29.3 5.2E+02 0.011 25.8 10.5 49 150-200 271-320 (517)
370 PRK13587 1-(5-phosphoribosyl)- 29.3 4.1E+02 0.0088 23.6 13.1 115 92-217 86-212 (234)
371 cd07943 DRE_TIM_HOA 4-hydroxy- 29.2 4.2E+02 0.0092 23.8 11.9 76 149-231 114-194 (263)
372 PF00731 AIRC: AIR carboxylase 28.9 2E+02 0.0043 23.9 6.0 54 177-231 10-65 (150)
373 cd06281 PBP1_LacI_like_5 Ligan 28.7 4E+02 0.0086 23.3 11.2 128 94-228 44-183 (269)
374 PRK07066 3-hydroxybutyryl-CoA 28.7 4.6E+02 0.01 24.6 9.3 114 96-222 100-226 (321)
375 TIGR03025 EPS_sugtrans exopoly 28.6 4.2E+02 0.0091 25.8 9.5 86 107-201 126-222 (445)
376 COG4359 Uncharacterized conser 28.5 93 0.002 26.9 4.1 36 180-219 75-110 (220)
377 TIGR03700 mena_SCO4494 putativ 28.5 5.1E+02 0.011 24.5 10.3 115 92-209 79-216 (351)
378 PHA03392 egt ecdysteroid UDP-g 28.5 2.3E+02 0.005 28.4 7.7 105 125-232 257-375 (507)
379 KOG2550 IMP dehydrogenase/GMP 28.5 5.3E+02 0.012 25.3 9.5 100 95-202 253-362 (503)
380 PLN02617 imidazole glycerol ph 28.5 6.4E+02 0.014 25.6 12.0 46 98-144 340-395 (538)
381 TIGR03278 methan_mark_10 putat 28.3 2.4E+02 0.0052 27.5 7.5 24 176-199 84-107 (404)
382 PRK07366 succinyldiaminopimela 28.2 5.2E+02 0.011 24.4 10.0 49 151-200 156-204 (388)
383 PF13727 CoA_binding_3: CoA-bi 28.2 1.6E+02 0.0035 23.9 5.7 72 122-199 90-173 (175)
384 PRK02308 uvsE putative UV dama 28.0 3E+02 0.0065 25.6 7.9 120 149-287 92-235 (303)
385 PF03162 Y_phosphatase2: Tyros 28.0 1.5E+02 0.0033 24.8 5.4 63 156-219 51-115 (164)
386 COG1609 PurR Transcriptional r 28.0 5E+02 0.011 24.2 13.7 126 94-226 103-242 (333)
387 COG0685 MetF 5,10-methylenetet 27.8 4.9E+02 0.011 24.0 11.4 122 94-220 94-227 (291)
388 cd00953 KDG_aldolase KDG (2-ke 27.8 3.9E+02 0.0083 24.4 8.5 49 152-202 25-73 (279)
389 PF00682 HMGL-like: HMGL-like 27.8 4.1E+02 0.009 23.2 9.8 69 158-231 118-190 (237)
390 TIGR01769 GGGP geranylgeranylg 27.8 2.1E+02 0.0047 25.0 6.4 59 139-203 3-62 (205)
391 PRK13399 fructose-1,6-bisphosp 27.7 2.5E+02 0.0054 26.8 7.3 18 279-296 177-196 (347)
392 PRK08636 aspartate aminotransf 27.4 1.8E+02 0.0039 27.9 6.6 50 151-201 163-215 (403)
393 PLN00143 tyrosine/nicotianamin 27.4 5.6E+02 0.012 24.6 10.3 49 150-200 160-209 (409)
394 TIGR02826 RNR_activ_nrdG3 anae 27.3 1.6E+02 0.0036 24.1 5.4 46 149-202 51-96 (147)
395 PLN02824 hydrolase, alpha/beta 27.2 1.1E+02 0.0024 27.6 4.9 48 94-144 89-136 (294)
396 PRK13753 dihydropteroate synth 27.1 5E+02 0.011 23.9 10.2 82 147-230 25-128 (279)
397 PRK00115 hemE uroporphyrinogen 27.1 3.7E+02 0.008 25.3 8.5 70 124-194 272-345 (346)
398 TIGR00735 hisF imidazoleglycer 26.9 4.6E+02 0.0099 23.4 12.2 42 92-136 84-126 (254)
399 PLN02540 methylenetetrahydrofo 26.9 7E+02 0.015 25.5 13.8 100 93-199 74-202 (565)
400 PRK06348 aspartate aminotransf 26.9 3.6E+02 0.0078 25.5 8.5 49 150-200 152-201 (384)
401 PRK08445 hypothetical protein; 26.7 5.5E+02 0.012 24.3 10.8 114 93-207 74-208 (348)
402 TIGR00433 bioB biotin syntheta 26.7 4.8E+02 0.01 23.6 12.8 123 92-219 62-199 (296)
403 cd03319 L-Ala-DL-Glu_epimerase 26.6 2.2E+02 0.0047 26.4 6.8 36 133-169 122-157 (316)
404 PRK07226 fructose-bisphosphate 26.6 2.7E+02 0.0058 25.2 7.2 101 91-201 38-146 (267)
405 TIGR02668 moaA_archaeal probab 26.6 5E+02 0.011 23.7 9.7 18 96-113 47-64 (302)
406 PLN00125 Succinyl-CoA ligase [ 26.5 5.3E+02 0.011 24.0 11.7 125 95-231 83-215 (300)
407 PLN02591 tryptophan synthase 26.5 4.8E+02 0.01 23.5 19.3 177 95-298 19-221 (250)
408 PF02614 UxaC: Glucuronate iso 26.4 29 0.00063 34.4 0.8 26 278-303 355-383 (462)
409 TIGR01520 FruBisAldo_II_A fruc 26.3 5.8E+02 0.013 24.4 10.1 23 180-202 37-59 (357)
410 PRK13397 3-deoxy-7-phosphohept 25.9 5E+02 0.011 23.5 10.1 104 184-298 112-222 (250)
411 KOG3111 D-ribulose-5-phosphate 25.9 4.5E+02 0.0097 23.0 10.9 188 92-315 17-214 (224)
412 PRK10949 protease 4; Provision 25.9 1.4E+02 0.003 30.9 5.6 53 149-202 352-404 (618)
413 cd06270 PBP1_GalS_like Ligand 25.7 4.5E+02 0.0097 22.9 13.4 130 94-230 44-186 (268)
414 PF08915 tRNA-Thr_ED: Archaea- 25.6 2.2E+02 0.0047 23.3 5.6 63 134-197 37-111 (138)
415 PRK11858 aksA trans-homoaconit 25.5 6E+02 0.013 24.3 11.6 16 96-111 30-45 (378)
416 PTZ00393 protein tyrosine phos 25.4 1.3E+02 0.0029 27.0 4.7 46 159-207 135-183 (241)
417 PF13378 MR_MLE_C: Enolase C-t 25.4 99 0.0021 23.5 3.6 68 150-223 7-74 (111)
418 PLN02450 1-aminocyclopropane-1 25.2 5.6E+02 0.012 25.2 9.8 40 161-201 191-231 (468)
419 PRK15452 putative protease; Pr 25.1 6.1E+02 0.013 25.0 9.8 87 95-201 79-167 (443)
420 cd00419 Ferrochelatase_C Ferro 25.0 1.7E+02 0.0037 23.5 5.1 25 92-116 77-101 (135)
421 PRK13886 conjugal transfer pro 25.0 1.4E+02 0.003 26.8 4.9 43 184-226 103-150 (241)
422 PF09419 PGP_phosphatase: Mito 24.9 4.2E+02 0.0092 22.3 8.5 65 149-217 64-128 (168)
423 TIGR02990 ectoine_eutA ectoine 24.8 5E+02 0.011 23.2 10.6 37 94-131 108-144 (239)
424 PLN02187 rooty/superroot1 24.8 6.7E+02 0.015 24.6 10.3 49 150-200 194-243 (462)
425 TIGR03884 sel_bind_Methan sele 24.8 1.3E+02 0.0028 21.7 3.6 34 136-169 17-53 (74)
426 PF12697 Abhydrolase_6: Alpha/ 24.7 1.3E+02 0.0027 24.9 4.5 49 94-145 53-101 (228)
427 PF02581 TMP-TENI: Thiamine mo 24.7 4.2E+02 0.0091 22.2 7.8 68 92-168 103-177 (180)
428 TIGR01949 AroFGH_arch predicte 24.7 2.6E+02 0.0057 25.1 6.7 105 91-202 35-144 (258)
429 TIGR03699 mena_SCO4550 menaqui 24.5 2.6E+02 0.0057 26.2 7.0 115 92-209 72-209 (340)
430 PF03851 UvdE: UV-endonuclease 24.3 2.5E+02 0.0054 25.8 6.4 21 150-171 89-109 (275)
431 PF01979 Amidohydro_1: Amidohy 24.2 82 0.0018 28.8 3.4 29 176-204 139-173 (333)
432 COG0041 PurE Phosphoribosylcar 24.1 2.5E+02 0.0055 23.4 5.7 52 179-231 14-67 (162)
433 TIGR03343 biphenyl_bphD 2-hydr 24.1 88 0.0019 27.8 3.6 48 94-144 88-135 (282)
434 PRK09196 fructose-1,6-bisphosp 24.0 2.9E+02 0.0063 26.3 7.0 19 278-296 176-196 (347)
435 COG0436 Aspartate/tyrosine/aro 23.9 1.7E+02 0.0037 28.2 5.7 50 150-200 153-202 (393)
436 TIGR02026 BchE magnesium-proto 23.9 7.3E+02 0.016 24.7 11.4 188 144-340 222-428 (497)
437 TIGR02810 agaZ_gatZ D-tagatose 23.9 6.9E+02 0.015 24.4 12.0 121 182-303 25-177 (420)
438 PLN00145 tyrosine/nicotianamin 23.8 2.1E+02 0.0046 27.8 6.4 50 150-201 180-230 (430)
439 TIGR01162 purE phosphoribosyla 23.8 2.2E+02 0.0047 23.8 5.4 52 179-231 10-63 (156)
440 PRK07550 hypothetical protein; 23.7 4.3E+02 0.0093 25.0 8.4 50 150-201 153-203 (386)
441 PRK07682 hypothetical protein; 23.7 6.1E+02 0.013 23.8 10.0 49 150-200 144-193 (378)
442 PRK13957 indole-3-glycerol-pho 23.7 5.5E+02 0.012 23.2 13.0 112 92-221 61-173 (247)
443 PLN00175 aminotransferase fami 23.7 5E+02 0.011 25.0 8.9 50 150-200 177-226 (413)
444 TIGR03538 DapC_gpp succinyldia 23.6 1.9E+02 0.0041 27.5 6.0 48 150-199 155-203 (393)
445 PTZ00242 protein tyrosine phos 23.6 1.2E+02 0.0026 25.4 4.0 21 92-112 27-47 (166)
446 TIGR03365 Bsubt_queE 7-cyano-7 23.5 1.7E+02 0.0037 26.1 5.2 48 149-202 61-108 (238)
447 COG3033 TnaA Tryptophanase [Am 23.5 2E+02 0.0042 27.8 5.6 54 147-201 168-226 (471)
448 COG0218 Predicted GTPase [Gene 23.5 1.2E+02 0.0025 26.5 3.9 63 136-202 80-143 (200)
449 PF02449 Glyco_hydro_42: Beta- 23.4 1.2E+02 0.0027 28.9 4.6 69 149-223 12-84 (374)
450 PRK09526 lacI lac repressor; R 23.4 5.7E+02 0.012 23.3 10.0 128 95-229 110-248 (342)
451 PRK15481 transcriptional regul 23.3 2.8E+02 0.006 26.8 7.1 49 150-199 201-251 (431)
452 COG1038 PycA Pyruvate carboxyl 23.3 9.7E+02 0.021 25.9 12.0 102 95-204 633-747 (1149)
453 PF01261 AP_endonuc_2: Xylose 23.3 4.4E+02 0.0094 21.9 9.3 83 149-232 28-136 (213)
454 PF07894 DUF1669: Protein of u 23.3 5.2E+02 0.011 23.9 8.2 60 150-219 136-196 (284)
455 PLN02965 Probable pheophorbida 23.0 1.7E+02 0.0036 25.8 5.1 48 94-144 58-106 (255)
456 TIGR03820 lys_2_3_AblA lysine- 23.0 7.2E+02 0.016 24.3 12.8 119 94-219 143-272 (417)
457 TIGR00973 leuA_bact 2-isopropy 22.8 7.8E+02 0.017 24.6 10.6 16 96-111 27-42 (494)
458 COG1180 PflA Pyruvate-formate 22.8 1.8E+02 0.0039 26.4 5.3 48 151-202 72-120 (260)
459 PF09151 DUF1936: Domain of un 22.8 33 0.00071 20.1 0.3 9 18-26 24-32 (36)
460 PF02114 Phosducin: Phosducin; 22.8 1.4E+02 0.003 27.2 4.5 45 185-229 135-185 (265)
461 PRK01278 argD acetylornithine 22.8 2.1E+02 0.0046 27.2 6.1 50 150-200 165-215 (389)
462 cd07321 Extradiol_Dioxygenase_ 22.7 85 0.0018 22.7 2.5 25 316-340 28-52 (77)
463 PF00710 Asparaginase: Asparag 22.7 3.1E+02 0.0067 25.6 7.0 58 136-202 204-261 (313)
464 COG5564 Predicted TIM-barrel e 22.4 2.7E+02 0.0058 24.8 5.8 107 117-233 67-188 (276)
465 TIGR00167 cbbA ketose-bisphosp 22.3 6.2E+02 0.014 23.3 9.3 24 180-203 28-51 (288)
466 cd00019 AP2Ec AP endonuclease 22.3 5.7E+02 0.012 22.9 13.3 144 148-294 45-211 (279)
467 PTZ00125 ornithine aminotransf 22.3 2.4E+02 0.0053 26.8 6.4 51 150-200 167-218 (400)
468 TIGR00677 fadh2_euk methylenet 22.2 6.1E+02 0.013 23.2 13.4 97 93-197 75-192 (281)
469 PRK05764 aspartate aminotransf 22.2 5.3E+02 0.012 24.3 8.8 49 150-200 154-203 (393)
470 PLN02208 glycosyltransferase f 22.1 7.6E+02 0.017 24.3 12.2 120 109-231 196-339 (442)
471 PRK08912 hypothetical protein; 22.0 5.7E+02 0.012 24.1 8.9 49 150-200 149-198 (387)
472 PRK12414 putative aminotransfe 21.9 5.1E+02 0.011 24.5 8.6 49 150-199 152-200 (384)
473 PRK13238 tnaA tryptophanase/L- 21.9 2.4E+02 0.0053 27.9 6.4 52 150-201 163-218 (460)
474 PRK07337 aminotransferase; Val 21.9 5.3E+02 0.012 24.3 8.7 50 150-200 153-202 (388)
475 TIGR02717 AcCoA-syn-alpha acet 21.8 5E+02 0.011 25.5 8.6 100 94-198 23-125 (447)
476 cd07923 Gallate_dioxygenase_C 21.8 1.1E+02 0.0025 23.1 3.1 25 316-340 30-54 (94)
477 COG1448 TyrB Aspartate/tyrosin 21.7 5.7E+02 0.012 24.7 8.4 116 177-298 124-244 (396)
478 COG0075 Serine-pyruvate aminot 21.6 3.6E+02 0.0078 26.1 7.2 77 151-231 93-171 (383)
479 TIGR03239 GarL 2-dehydro-3-deo 21.5 6E+02 0.013 22.8 8.5 73 147-226 148-228 (249)
480 PRK07324 transaminase; Validat 21.5 5.8E+02 0.013 24.1 8.8 50 150-200 143-192 (373)
481 TIGR03537 DapC succinyldiamino 21.5 2.4E+02 0.0052 26.3 6.1 51 150-201 126-176 (350)
482 PF13350 Y_phosphatase3: Tyros 21.4 1E+02 0.0022 25.5 3.2 25 180-204 110-134 (164)
483 PRK08363 alanine aminotransfer 21.3 4.7E+02 0.01 24.8 8.2 50 150-201 156-206 (398)
484 PRK06256 biotin synthase; Vali 21.3 6.7E+02 0.014 23.3 13.0 122 92-219 91-228 (336)
485 PRK09792 4-aminobutyrate trans 21.3 2.9E+02 0.0063 26.8 6.8 52 149-200 182-238 (421)
486 PLN02623 pyruvate kinase 21.2 8.2E+02 0.018 25.2 9.9 96 98-201 284-383 (581)
487 PRK07309 aromatic amino acid a 21.2 2.6E+02 0.0057 26.6 6.4 51 150-201 153-206 (391)
488 PF13380 CoA_binding_2: CoA bi 21.2 2.3E+02 0.005 22.0 5.0 40 94-137 68-107 (116)
489 PF07746 LigA: Aromatic-ring-o 21.1 1.3E+02 0.0028 22.5 3.3 26 315-340 22-47 (88)
490 TIGR02090 LEU1_arch isopropylm 21.0 7.3E+02 0.016 23.6 11.2 101 98-204 77-194 (363)
491 TIGR03190 benz_CoA_bzdN benzoy 21.0 4.8E+02 0.01 25.0 8.0 20 150-169 302-321 (377)
492 cd03308 CmuA_CmuC_like CmuA_Cm 20.9 5.1E+02 0.011 24.8 8.2 47 124-170 303-355 (378)
493 TIGR03470 HpnH hopanoid biosyn 20.8 4.8E+02 0.01 24.3 7.9 134 151-301 62-204 (318)
494 PRK13125 trpA tryptophan synth 20.8 6E+02 0.013 22.6 16.7 138 138-298 80-217 (244)
495 PRK10401 DNA-binding transcrip 20.8 6.6E+02 0.014 23.0 13.1 127 95-229 105-245 (346)
496 cd00617 Tnase_like Tryptophana 20.8 2.4E+02 0.0052 27.7 6.0 52 150-201 138-193 (431)
497 PF14542 Acetyltransf_CG: GCN5 20.8 90 0.002 22.5 2.3 40 175-222 36-75 (78)
498 PTZ00433 tyrosine aminotransfe 20.7 5.6E+02 0.012 24.5 8.6 50 150-201 167-217 (412)
499 cd00389 microbial_RNases micro 20.6 60 0.0013 23.2 1.3 13 285-297 49-61 (71)
500 PRK06855 aminotransferase; Val 20.6 2.7E+02 0.0058 27.1 6.4 50 150-200 159-210 (433)
No 1
>cd01311 PDC_hydrolase 2-pyrone-4,6-dicarboxylic acid (PDC) hydrolase hydrolyzes PDC to yield 4-oxalomesaconic acid (OMA) or its tautomer, 4-carboxy-2-hydroxymuconic acid (CHM). This reaction is part of the protocatechuate (PCA) 4,5-cleavage pathway. PCA is one of the most important intermediate metabolites in the bacterial pathways for various phenolic compounds, including lignin, which is the most abundant aromatic material in nature.
Probab=100.00 E-value=3.1e-42 Score=314.75 Aligned_cols=258 Identities=22% Similarity=0.313 Sum_probs=205.3
Q ss_pred eeeeeeeccCCCCccCCCCCCCCCCCC--CCCCChHHHHHHhHHCCCceEEEeCCCCCccchHHHHHHHHhCCCcEEEEE
Q 019335 62 IIDSHLHVWASPEEAADKFPYFPGQEP--TLPGHVDFLLQCMEEASVDGALIVQPINHKFDHSLVTSVLKKYPSKFVGCC 139 (342)
Q Consensus 62 iID~H~Hl~~~~~~~~~~~p~~~~~~~--~~~~~~~~ll~~md~~GI~~~v~~~~~~~~~~N~~~~~~~~~~p~r~~g~~ 139 (342)
+||+|+|+|++ .+||..+... ....++++|++.|+..||+++|+++++.++.+|+++++.++. ++||+|++
T Consensus 2 ~iD~H~H~~~~------~~~~~~~~~~~~~~~~~~e~l~~~m~~~gV~~aV~vq~~~~~~~n~~~~~~~~~-~~r~~g~~ 74 (263)
T cd01311 2 AVDAHMHVFDP------GYPFPPAPEKFTPYDPGIDDLRALRSTLGIDRVVIVQASIYGADNSNLLDALAS-NGKARGGA 74 (263)
T ss_pred CEEeeeeeeCC------CCCCCCCCCCCCCCCCCHHHHHHHHHHhCCCcEEEeCccccCCchHHHHHHHhh-CCCeEEEE
Confidence 69999999974 5788765432 235789999999999999999999988788899999999985 48999999
Q ss_pred EcCCCCcchHHHHHHHHHhcCCceEEEecCCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEEeccCCCCCHHHHHHHHHhC
Q 019335 140 LANPAEDVIGIKQLEQLILKDGFRAVRFNPYLWPSGQQMTNEVGKAMFSKAGELGVPVGFMCMKGLNLHISEIEELCTEF 219 (342)
Q Consensus 140 ~i~p~~~~~~~~eler~~~~~g~~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH~~~~~~~~~~~l~~l~~~~ 219 (342)
+++|... ..++|+++ .+.|++|||+++... +.. +++.+.++|++|+++|++|.+|++ +.++..+..++++|
T Consensus 75 ~~~p~~~--~~~~l~~~-~~~g~rGvRl~~~~~--~~~-~~~~~~~~~~~~~~~gl~v~~~~~---~~~l~~l~~l~~~~ 145 (263)
T cd01311 75 TVDPRTT--TDAELKEM-HDAGVRGVRFNFLFG--GVD-NKDELDEIAKRAAELGWHVQVYFD---AVDLPALLPFLQKL 145 (263)
T ss_pred EECCCCC--CHHHHHHH-HHCCCeEEEEecccC--CCC-CHHHHHHHHHHHHHcCCEEEEEeC---HhhHHHHHHHHHHC
Confidence 9988653 35899998 678999999997532 333 888999999999999999999997 35778899999999
Q ss_pred CCCcEEecccCCCCCCCCchhhHhHHHHhcccCCCcEEEecCcccccccCCCCCCCchhHHHHHHHhcCCCcEEEccCCC
Q 019335 220 PSTTVLLDHLAFCKPPSNDEESLAFSNLLKLSRFPQVYVKFSALFRVSRMPFPYQDLSSPLSQVVSSFGANRVMWGSDFP 299 (342)
Q Consensus 220 P~lk~vl~H~G~~~p~~~~~~~~~~~~~~~l~~~~Nvy~~~S~~~~~~~~~~~~~~~~~~l~~~i~~~G~dRilfGSD~P 299 (342)
+++||++|+|.+++. .+.....|+++++++++||||+|+|+++..+...|++.+..+.++.+++. |+||||||||||
T Consensus 146 -~l~ivldH~G~p~~~-~~~~~~~~~~~l~~l~~pNV~~k~Sg~~~~~~~~~~~~~~~~~~~~~~~~-g~dRlmfGSD~P 222 (263)
T cd01311 146 -PVAVVIDHFGRPDVT-KGVDGAEFAALLKLIEEGNVWVKVSGPYRLSVKQEAYADVIAFARQIVAA-APDRLVWGTDWP 222 (263)
T ss_pred -CCCEEEECCCCCCCC-CCCCCHhHHHHHHHHhcCCEEEEecchhhcCCCCCCHHHHHHHHHHHHHh-CCCcEEEeCCCC
Confidence 999999999985432 11223578887765589999999999876655667778888889888877 999999999999
Q ss_pred CCCCC--CChHhHHHHHHHHHhcCCCCHHHHHHHHhHHHHHh
Q 019335 300 YVVPE--CGYKGGREAASLIANEVPLSPSELEWIMGGTIMQL 339 (342)
Q Consensus 300 ~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~I~~~NA~rl 339 (342)
+.... .+|......++.+.+ .--+++++++|+++|+++|
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~n~~~~ 263 (263)
T cd01311 223 HPRLREPDPMPDDGALLRLIPS-WAPDAQLQRKNLVDNPARL 263 (263)
T ss_pred CCCccccCCCCCHHHHHHHHHH-HcCCHHHHHHHHHhChhhC
Confidence 98655 233333333333322 1125688999999999986
No 2
>COG3618 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=100.00 E-value=3.7e-42 Score=305.59 Aligned_cols=272 Identities=19% Similarity=0.281 Sum_probs=231.6
Q ss_pred CCCCCeeeeeeeccCCCCccCCCCCCCCCCCC-CCCCChHHHHHHhHHCCCceEEEeCCCCCccchHHHHHHHHhCCCcE
Q 019335 57 PSKVKIIDSHLHVWASPEEAADKFPYFPGQEP-TLPGHVDFLLQCMEEASVDGALIVQPINHKFDHSLVTSVLKKYPSKF 135 (342)
Q Consensus 57 ~~~~~iID~H~Hl~~~~~~~~~~~p~~~~~~~-~~~~~~~~ll~~md~~GI~~~v~~~~~~~~~~N~~~~~~~~~~p~r~ 135 (342)
..+.++||+|.|+|++.. ..|||..+..+ ....+.++|+++++..||.++|++|++..+.||+++++.+++.+++-
T Consensus 4 ~~~~~~IDtH~Hl~~~~~---~~~pw~~~~~~~~~d~~~~dY~~~~~~~gv~~~V~vq~~~~~~D~~~e~~~v~~~~~~~ 80 (279)
T COG3618 4 AAPQMIIDTHAHLWDPGA---LPYPWLADYEALRRDYLFEDYLALLKAHGVSGGVLVQVNVDPRDNEKELAFVAELAERH 80 (279)
T ss_pred cccccccchhhhhhcccc---cCCCCCCcccccCCCCCHHHHHHHHHhcCcceeEEEecccCccchHHHHHHHHhhHHhh
Confidence 356799999999998752 58999985443 34678999999999999999999999999999999999999988765
Q ss_pred EE-EEEcCCCCcchHHHHHHHHHhcCCceEEEecCCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEEeccCCCCCHHHHHH
Q 019335 136 VG-CCLANPAEDVIGIKQLEQLILKDGFRAVRFNPYLWPSGQQMTNEVGKAMFSKAGELGVPVGFMCMKGLNLHISEIEE 214 (342)
Q Consensus 136 ~g-~~~i~p~~~~~~~~eler~~~~~g~~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH~~~~~~~~~~~l~~ 214 (342)
.+ ++.|+...++ ..++|++.. .+-++|||......+. .....+.|+..++++.++|+++.+++. +.++..+..
T Consensus 81 g~~vg~id~~~~e-~~a~L~~~~-~~~~~GvR~~l~~~p~-~~~~a~~~r~~~~rL~~~gl~fdl~~~---~~ql~~~i~ 154 (279)
T COG3618 81 GGIVGVIDECRPE-FAAKLERAR-YPFFRGVRRNLHVVPD-GLFEAPAWRANVERLAKLGLHFDLQVD---PHQLPDLIP 154 (279)
T ss_pred CceEEEEecCCch-HHHHHHHhc-ccccceeeehhhcCCc-cchhhHHHHHHHHHHHhcCCeEEEEeC---hhhhHHHHH
Confidence 55 7788888776 778898885 7779999977532222 233448999999999999999999986 568889999
Q ss_pred HHHhCCCCcEEecccCCCCCCCCchhhHhHHH-HhcccCCCcEEEecCcccccccCCCCCCCchhHHHHHHHhcCCCcEE
Q 019335 215 LCTEFPSTTVLLDHLAFCKPPSNDEESLAFSN-LLKLSRFPQVYVKFSALFRVSRMPFPYQDLSSPLSQVVSSFGANRVM 293 (342)
Q Consensus 215 l~~~~P~lk~vl~H~G~~~p~~~~~~~~~~~~-~~~l~~~~Nvy~~~S~~~~~~~~~~~~~~~~~~l~~~i~~~G~dRil 293 (342)
++..+|+++||++|+|.+. ...+....|++ +.+|++.||||+|+||.+.++...|+++++.++.+.+++.||.||+|
T Consensus 155 l~~~~Pd~~~VldH~G~p~--~~~~~~~~w~~~m~~la~~pNv~~KlSG~~~~~~~~w~~~~v~p~~e~~i~~fg~dR~v 232 (279)
T COG3618 155 LALKAPDVNFVLDHCGRPD--IKINLEDPWKAALARLARRPNVWAKLSGVYAYSDESWTVEDVRPYVEELIELFGWDRFV 232 (279)
T ss_pred HHhhCCCCCEEeccCCCCC--ccccccCHHHHHHHHHHhCCCeEEEEeeecccccCCCCHHHHHHHHHHHHHhcCccceE
Confidence 9999999999999999852 33334456776 66799999999999999998888899999999999999999999999
Q ss_pred EccCCCCCCCCCChHhHHHHHHHHHhcCCCCHHHHHHHHhHHHHHhcCC
Q 019335 294 WGSDFPYVVPECGYKGGREAASLIANEVPLSPSELEWIMGGTIMQLFQD 342 (342)
Q Consensus 294 fGSD~P~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~I~~~NA~rl~~~ 342 (342)
||||||+.....++..++..+.++.. + +.+++++||++||+|||+.
T Consensus 233 fGSdwPv~~l~~~~~~~~~~~~~~v~--~-~~~er~~i~~~NA~rly~~ 278 (279)
T COG3618 233 FGSDWPVTSLESDFASWVAATRELVP--G-DAAERARILVDNARRLYRL 278 (279)
T ss_pred ecCCCCcccccCChHHHHHHHHHHcC--C-CHHHHHHHHhhCHHHHhCC
Confidence 99999999998889999998888763 5 8999999999999999973
No 3
>PF04909 Amidohydro_2: Amidohydrolase; InterPro: IPR006992 These proteins are related to the metal-dependent hydrolase superfamily []. The family includes 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase which converts alpha-amino-beta-carboxymuconate-epsilon- semialdehyde (ACMS) to alpha-aminomuconate semialdehyde (AMS). ACMS can be converted non-enzymatically to quinolate, a potent endogenous excitoxin of neuronal cells which is implicated in the pathogenesis of various neurodegenerative disorders. In the presence of AMCSD, ACMS is converted to AMS, a benign catabolite. 2-amino-3-(3-oxoprop-2-enyl)-but-2-enedioate = 2-aminomuconate semialdehyde + CO2. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2QPX_A 4D8L_A 3K4W_I 3IRS_B 4DZI_B 3S4T_G 2GWG_B 3IJ6_A 2DVX_C 2DVT_C ....
Probab=100.00 E-value=2.6e-36 Score=275.74 Aligned_cols=245 Identities=27% Similarity=0.373 Sum_probs=183.6
Q ss_pred eeeeeeccCCCCccCCCCCCCCCCCCCCCCChHHHHHHhHHCCCceEEEeCCC---------C---------CccchHHH
Q 019335 63 IDSHLHVWASPEEAADKFPYFPGQEPTLPGHVDFLLQCMEEASVDGALIVQPI---------N---------HKFDHSLV 124 (342)
Q Consensus 63 ID~H~Hl~~~~~~~~~~~p~~~~~~~~~~~~~~~ll~~md~~GI~~~v~~~~~---------~---------~~~~N~~~ 124 (342)
||+|+|+.. ....+..+..|++.+++........ . ....|+++
T Consensus 1 ID~H~H~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~ 61 (273)
T PF04909_consen 1 IDAHIHLPG-------------------EWDPEERLPEMDKQGVDRQLASPEDLLVDMDVAGVDGADEVQASARGFNDWL 61 (273)
T ss_dssp EEEEEEEGG-------------------GTCHHHHHHHHHHHTEEEEEEEHEEEEHCHHHGGHSHHHHHHHHHHHHHHHH
T ss_pred CcCcccCCC-------------------CcCchhhhhHHHhcCCchhhcCHHHHHhhHhHhccchHHHHhhHHHHHHHHH
Confidence 899999832 2356788899999999988654311 0 11248889
Q ss_pred HHHHHhCCCcEEEEEEcCCCCcchHHHHHHHHHhcCCceEEEecCCCCCCCCcCCcHHHH-HHHHHHhhhCCeEEEEec-
Q 019335 125 TSVLKKYPSKFVGCCLANPAEDVIGIKQLEQLILKDGFRAVRFNPYLWPSGQQMTNEVGK-AMFSKAGELGVPVGFMCM- 202 (342)
Q Consensus 125 ~~~~~~~p~r~~g~~~i~p~~~~~~~~eler~~~~~g~~Gvk~~~~~~~~g~~l~~~~~~-~~~~~a~e~~lpv~iH~~- 202 (342)
++.+.++|+++.+++.+++...+++.+++++++.+.|++||++++.. .+...+++.+. ++|++|+|+|+||.+|++
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~Gv~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~pv~~H~g~ 139 (273)
T PF04909_consen 62 VELAAKHPDRFIGFAAIPPPDPEDAVEELERALQELGFRGVKLHPDL--GGFDPDDPRLDDPIFEAAEELGLPVLIHTGM 139 (273)
T ss_dssp HHHHHHSTTTEEEEEEETTTSHHHHHHHHHHHHHTTTESEEEEESSE--TTCCTTSGHCHHHHHHHHHHHT-EEEEEESH
T ss_pred HHHHHHcCCCEEEEEEecCCCchhHHHHHHHhccccceeeeEecCCC--CccccccHHHHHHHHHHHHhhccceeeeccc
Confidence 99999999999999988887777899999999989999999999865 25667777777 999999999999999976
Q ss_pred c------CCCCCHHHHHHHHHhCCCCcEEecccCCCCCCCCchhhHhHHHHhcc-cCCCcEEEecCcccccccCCCCCCC
Q 019335 203 K------GLNLHISEIEELCTEFPSTTVLLDHLAFCKPPSNDEESLAFSNLLKL-SRFPQVYVKFSALFRVSRMPFPYQD 275 (342)
Q Consensus 203 ~------~~~~~~~~l~~l~~~~P~lk~vl~H~G~~~p~~~~~~~~~~~~~~~l-~~~~Nvy~~~S~~~~~~~~~~~~~~ 275 (342)
. .....+..+.+++++||++|||++|+|++ ...|.++.++ .++||||+|+|+.... ...++...
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~P~l~ii~~H~G~~--------~~~~~~~~~l~~~~~nvy~d~s~~~~~-~~~~~~~~ 210 (273)
T PF04909_consen 140 TGFPDAPSDPADPEELEELLERFPDLRIILAHLGGP--------FPWWEEALRLLDRFPNVYVDLSGIPPF-WYFWPPSF 210 (273)
T ss_dssp THHHHHHHHHHHHHHHTTHHHHSTTSEEEESGGGTT--------HHHHHHHHHHHHHHTTEEEECHSHHSS-EEEETTHH
T ss_pred cchhhhhHHHHHHHHHHHHHHHhcCCeEEEecCccc--------chhHHHHHHHHHhCCcccccccccccc-cccCcccc
Confidence 1 01234567899999999999999999984 1245555554 6799999999996421 00112223
Q ss_pred chhHHHHHHHhcCCCcEEEccCCCCCCCCCChHhHHHHHHHHHhcCCCCHHHHHHHHhHHHHHhcC
Q 019335 276 LSSPLSQVVSSFGANRVMWGSDFPYVVPECGYKGGREAASLIANEVPLSPSELEWIMGGTIMQLFQ 341 (342)
Q Consensus 276 ~~~~l~~~i~~~G~dRilfGSD~P~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~I~~~NA~rl~~ 341 (342)
..+.+..+++.+|+||||||||||+......+.... ...... .++++++++|+++||+|||+
T Consensus 211 ~~~~l~~~~~~~g~drilfGSD~P~~~~~~~~~~~~-~~~~~~---~l~~~~~~~i~~~NA~rl~~ 272 (273)
T PF04909_consen 211 DRPFLRRAVDEFGPDRILFGSDYPHPDGASPYEYIW-EAYFLD---DLSEEEREKILYDNARRLYG 272 (273)
T ss_dssp CHHHHHHHHHHHTGGGEEEE--TTSSTHHHHHHHHH-HHHHHH---HSSHHHHHHHHTHHHHHHHT
T ss_pred cHHHHHHHHHHhCCceEEecCCCCCCCccccHHHHH-Hhhhcc---CCCHHHHHHHHhHhHHHHcC
Confidence 457899999999999999999999986532222221 111111 27999999999999999997
No 4
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=100.00 E-value=1.5e-33 Score=259.76 Aligned_cols=218 Identities=23% Similarity=0.376 Sum_probs=174.2
Q ss_pred HHHhHHCCCceEEEeC--CC-C-----CccchHHHHHHHHhCCCcEEEEEEcCCCCcchHHHHHHHHHhcCCceEEEecC
Q 019335 98 LQCMEEASVDGALIVQ--PI-N-----HKFDHSLVTSVLKKYPSKFVGCCLANPAEDVIGIKQLEQLILKDGFRAVRFNP 169 (342)
Q Consensus 98 l~~md~~GI~~~v~~~--~~-~-----~~~~N~~~~~~~~~~p~r~~g~~~i~p~~~~~~~~eler~~~~~g~~Gvk~~~ 169 (342)
++.|+..||+..++.. +. . ....|++++++++++|+||+|++.++|.+++.+++|++|++.+.|++|+++++
T Consensus 55 ~~~~~~~~i~~~~~~~~~~~~~~~d~~~~~~nd~~a~~~~~~pdrf~~~~~v~p~~~~~a~~E~er~v~~~gf~g~~l~p 134 (293)
T COG2159 55 LAFMDAAGIDLFVLSGMGEVAIIPDLRRALANDDLAALAAEYPDRFVGFARVDPRDPEAAAEELERRVRELGFVGVKLHP 134 (293)
T ss_pred HhhhcccccceEEeeccccccchHHHhhhhhhHHHHHHHhhCCcceeeeeeeCCCchHHHHHHHHHHHHhcCceEEEecc
Confidence 7899999999998873 11 1 11128999999999999999999999999877899999999999999999998
Q ss_pred CCCCCCCcCCcHHHHHHHHHHhhhCCeEEEEeccCCC--------CCHHHHHHHHHhCCCCcEEecccCCCCCCCCchhh
Q 019335 170 YLWPSGQQMTNEVGKAMFSKAGELGVPVGFMCMKGLN--------LHISEIEELCTEFPSTTVLLDHLAFCKPPSNDEES 241 (342)
Q Consensus 170 ~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH~~~~~~--------~~~~~l~~l~~~~P~lk~vl~H~G~~~p~~~~~~~ 241 (342)
.. .+...+++++.++|++|+++|+||.+|+|.+.. ..+..+.+++++||+||||+.|+|...|+.
T Consensus 135 ~~--~~~~~~~~~~~pi~~~a~~~gvpv~ihtG~~~~~~~~~~~~~~p~~~~~va~~fP~l~IVl~H~G~~~p~~----- 207 (293)
T COG2159 135 VA--QGFYPDDPRLYPIYEAAEELGVPVVIHTGAGPGGAGLEKGHSDPLYLDDVARKFPELKIVLGHMGEDYPWE----- 207 (293)
T ss_pred cc--cCCCCCChHHHHHHHHHHHcCCCEEEEeCCCCCCcccccCCCCchHHHHHHHHCCCCcEEEEecCCCCchh-----
Confidence 75 367888999999999999999999999986532 345689999999999999999999422321
Q ss_pred HhHHHHhcc-cCCCcEEEecCcccccccCCCCCCCchhHHHHHHHhcCCCcEEEccCCCCCCCCCChHhHHHHHHHHHhc
Q 019335 242 LAFSNLLKL-SRFPQVYVKFSALFRVSRMPFPYQDLSSPLSQVVSSFGANRVMWGSDFPYVVPECGYKGGREAASLIANE 320 (342)
Q Consensus 242 ~~~~~~~~l-~~~~Nvy~~~S~~~~~~~~~~~~~~~~~~l~~~i~~~G~dRilfGSD~P~~~~~~~~~~~~~~~~~~~~~ 320 (342)
.+...+ ...+|||+|+|+.... + .....++.+.+ .|.||||||||||+..+. .+... +. .
T Consensus 208 ---~~a~~~a~~~~nvy~d~s~~~~~--~-----~~~~~~~~~~~-~~~dkilFGSD~P~~~~~----~~l~~---~~-~ 268 (293)
T COG2159 208 ---LEAIELAYAHPNVYLDTSGVRPK--Y-----FAPPLLEFLKE-LGPDKILFGSDYPAIHPE----VWLAE---LD-E 268 (293)
T ss_pred ---HHHHHHHHhCCCceeeeeccccc--c-----CChHHHHHHHh-cccCeEEecCCCCCcCHH----HHHHH---HH-h
Confidence 122223 4689999999986321 0 11257888887 899999999999997542 33332 22 4
Q ss_pred CCCCHHHHHHHHhHHHHHhcC
Q 019335 321 VPLSPSELEWIMGGTIMQLFQ 341 (342)
Q Consensus 321 ~~l~~~~~~~I~~~NA~rl~~ 341 (342)
++++++.+++|+++||+|||+
T Consensus 269 l~l~~e~k~kiL~~NA~rll~ 289 (293)
T COG2159 269 LGLSEEVKEKILGENAARLLG 289 (293)
T ss_pred cCCCHHHHHHHHHHhHHHHhC
Confidence 789999999999999999996
No 5
>cd01310 TatD_DNAse TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.
Probab=99.95 E-value=5.2e-26 Score=205.76 Aligned_cols=237 Identities=20% Similarity=0.212 Sum_probs=172.0
Q ss_pred eeeeeeeccCCCCccCCCCCCCCCCCCCCCCChHHHHHHhHHCCCceEEEeCCCCCccchHHHHHHHHhCCCcEEEEEEc
Q 019335 62 IIDSHLHVWASPEEAADKFPYFPGQEPTLPGHVDFLLQCMEEASVDGALIVQPINHKFDHSLVTSVLKKYPSKFVGCCLA 141 (342)
Q Consensus 62 iID~H~Hl~~~~~~~~~~~p~~~~~~~~~~~~~~~ll~~md~~GI~~~v~~~~~~~~~~N~~~~~~~~~~p~r~~g~~~i 141 (342)
+||+|+|+... ++ ..+.+++++.|++.||+.+|+++.. ..+|+++.+++++++. +++++.+
T Consensus 1 ~~D~H~H~~~~--------~~--------~~~~~~~l~~~~~~gv~~~v~~~~~--~~~~~~~~~la~~~~~-i~~~~G~ 61 (251)
T cd01310 1 LIDTHCHLDFP--------QF--------DADRDDVLARAREAGVIKIIVVGTD--LKSSKRALELAKKYDN-VYAAVGL 61 (251)
T ss_pred CEEeeeCCCch--------hh--------ccCHHHHHHHHHHcCCCEEEEeCCC--HHHHHHHHHHHHhCCC-eEEEEee
Confidence 69999998642 11 1367899999999999999998653 3479999999999964 6666888
Q ss_pred CCCCcch----HHHHHHHHHhcCCceEEEe-cCCCCCCC--CcCCcHHHHHHHHHHhhhCCeEEEEeccCCCCCHHHHHH
Q 019335 142 NPAEDVI----GIKQLEQLILKDGFRAVRF-NPYLWPSG--QQMTNEVGKAMFSKAGELGVPVGFMCMKGLNLHISEIEE 214 (342)
Q Consensus 142 ~p~~~~~----~~~eler~~~~~g~~Gvk~-~~~~~~~g--~~l~~~~~~~~~~~a~e~~lpv~iH~~~~~~~~~~~l~~ 214 (342)
+|..... .+++++++++..+++||+. ........ ...+++.++++++.|+++|+||.+|++.+ ...+.+
T Consensus 62 hP~~~~~~~~~~~~~l~~~~~~~~~~~IGeiGld~~~~~~~~~~q~~~~~~~~~~a~e~~~pv~iH~~~~----~~~~~~ 137 (251)
T cd01310 62 HPHDADEHVDEDLDLLELLAANPKVVAIGEIGLDYYRDKSPREVQKEVFRAQLELAKELNLPVVIHSRDA----HEDVLE 137 (251)
T ss_pred CcchhhcCCHHHHHHHHHHhcCCCEEEEEeeecCcCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEeeCc----hHHHHH
Confidence 9876332 4789999987788999953 32221101 12567899999999999999999999853 567899
Q ss_pred HHHhCC-CCcEEecccCCCCCCCCchhhHhHHHHhcccCCCcEEEecCcccccccCCCCCCCchhHHHHHHHhcCCCcEE
Q 019335 215 LCTEFP-STTVLLDHLAFCKPPSNDEESLAFSNLLKLSRFPQVYVKFSALFRVSRMPFPYQDLSSPLSQVVSSFGANRVM 293 (342)
Q Consensus 215 l~~~~P-~lk~vl~H~G~~~p~~~~~~~~~~~~~~~l~~~~Nvy~~~S~~~~~~~~~~~~~~~~~~l~~~i~~~G~dRil 293 (342)
++++|| ..++|+ |++.+. +..+.++.+ +|+|+++|+..... -...++.+++.++.||||
T Consensus 138 l~~~~~~~~~~i~-H~~~~~----------~~~~~~~~~-~g~~~~~~~~~~~~--------~~~~~~~~~~~~~~dril 197 (251)
T cd01310 138 ILKEYGPPKRGVF-HCFSGS----------AEEAKELLD-LGFYISISGIVTFK--------NANELREVVKEIPLERLL 197 (251)
T ss_pred HHHhcCCCCCEEE-EccCCC----------HHHHHHHHH-cCCEEEeeeeeccC--------CCHHHHHHHHhCChHHEE
Confidence 999998 666555 665432 112223333 68999999864321 114578899999999999
Q ss_pred EccCCCCCCCCC-----ChH-hHHHHHHHHHhcCCCCHHHHHHHHhHHHHHhcC
Q 019335 294 WGSDFPYVVPEC-----GYK-GGREAASLIANEVPLSPSELEWIMGGTIMQLFQ 341 (342)
Q Consensus 294 fGSD~P~~~~~~-----~~~-~~~~~~~~~~~~~~l~~~~~~~I~~~NA~rl~~ 341 (342)
||||+|+..... .+. .....+..+.+..+++++++.+++++|+++||+
T Consensus 198 ~~TD~p~~~~~~~~~~~~~~~~~~~~~~~la~~~gl~~e~~~~~~~~N~~~ll~ 251 (251)
T cd01310 198 LETDSPYLAPVPFRGKRNEPAYVKHVAEKIAELKGISVEEVAEVTTENAKRLFG 251 (251)
T ss_pred EcccCCCCCCCCCCCCCCCChhHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhC
Confidence 999999975431 111 122334444434799999999999999999986
No 6
>TIGR00010 hydrolase, TatD family. Several genomes have multiple paralogs related to this family. However, a set of 17 proteins can be found, one each from 17 of the first 20 genomes, such that each member forms a bidirectional best hit across genomes with all other members of the set. This core set (and one other near-perfect member), but not the other paralogs, form the seed for this model. Additionally, members of the seed alignment and all trusted hits, but not all paralogs, have a conserved motif DxHxH near the amino end. The member from E. coli was recently shown to have DNase activity.
Probab=99.92 E-value=1.4e-23 Score=190.12 Aligned_cols=238 Identities=21% Similarity=0.187 Sum_probs=168.3
Q ss_pred eeeeeeeccCCCCccCCCCCCCCCCCCCCCCChHHHHHHhHHCCCceEEEeCCCCCccchHHHHHHHHhCCCcEEEEEEc
Q 019335 62 IIDSHLHVWASPEEAADKFPYFPGQEPTLPGHVDFLLQCMEEASVDGALIVQPINHKFDHSLVTSVLKKYPSKFVGCCLA 141 (342)
Q Consensus 62 iID~H~Hl~~~~~~~~~~~p~~~~~~~~~~~~~~~ll~~md~~GI~~~v~~~~~~~~~~N~~~~~~~~~~p~r~~g~~~i 141 (342)
+||+|+|+.+.. + ..+++++++.|+++||+.+|++... ..+++++.+.++++| ++++++.+
T Consensus 1 ~iD~H~Hl~~~~--------~--------~~~~~~~~~~~~~~Gv~~~v~~~~~--~~~~~~~~~~~~~~~-~i~~~~Gi 61 (252)
T TIGR00010 1 LIDAHCHLDFLD--------F--------EEDVEEVIERAKAAGVTAVVAVGTD--LEDFLRALELAEKYP-NVYAAVGV 61 (252)
T ss_pred CEEeccCCCChh--------h--------ccCHHHHHHHHHHcCCCEEEEecCC--HHHHHHHHHHHHHCC-CEEEEEEe
Confidence 589999986321 1 1268999999999999999977543 346789999999999 99999999
Q ss_pred CCCCc----chHHHHHHHHHhcCCceEEEecCCCCC---CCCcCCcHHHHHHHHHHhhhCCeEEEEeccCCCCCHHHHHH
Q 019335 142 NPAED----VIGIKQLEQLILKDGFRAVRFNPYLWP---SGQQMTNEVGKAMFSKAGELGVPVGFMCMKGLNLHISEIEE 214 (342)
Q Consensus 142 ~p~~~----~~~~~eler~~~~~g~~Gvk~~~~~~~---~g~~l~~~~~~~~~~~a~e~~lpv~iH~~~~~~~~~~~l~~ 214 (342)
+|... +..+++++++++..+++||......+. .+...+.+.+++++++|+++|+||.+|++.. ...+.+
T Consensus 62 hP~~~~~~~~~~~~~l~~~l~~~~~~~iGEiGld~~~~~~~~~~q~~~~~~~~~~a~~~~~pv~iH~~~~----~~~~~~ 137 (252)
T TIGR00010 62 HPLDVDDDTKEDIKELERLAAHPKVVAIGETGLDYYKADEYKRRQEEVFRAQLQLAEELNLPVIIHARDA----EEDVLD 137 (252)
T ss_pred CcchhhcCCHHHHHHHHHHccCCCEEEEEecccCcCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEecCc----cHHHHH
Confidence 99653 234578888887788999965433211 0111244889999999999999999999742 356788
Q ss_pred HHHhCCCCcEEecccCCCCCCCCchhhHhHHHHhcccCCCcEEEecCcccccccCCCCCCCchhHHHHHHHhcCCCcEEE
Q 019335 215 LCTEFPSTTVLLDHLAFCKPPSNDEESLAFSNLLKLSRFPQVYVKFSALFRVSRMPFPYQDLSSPLSQVVSSFGANRVMW 294 (342)
Q Consensus 215 l~~~~P~lk~vl~H~G~~~p~~~~~~~~~~~~~~~l~~~~Nvy~~~S~~~~~~~~~~~~~~~~~~l~~~i~~~G~dRilf 294 (342)
+++++|..+.++.|...+. .+.+.++.+ .|+|+++++..... ..+.++++++.++.|||||
T Consensus 138 ~l~~~~~~~~~i~H~~~~~----------~~~~~~~~~-~g~~~~~~~~~~~~--------~~~~~~~~i~~~~~dril~ 198 (252)
T TIGR00010 138 ILREEKPKVGGVLHCFTGD----------AELAKKLLD-LGFYISISGIVTFK--------NAKSLREVVRKIPLERLLV 198 (252)
T ss_pred HHHhcCCCCCEEEEccCCC----------HHHHHHHHH-CCCeEeeceeEecC--------CcHHHHHHHHhCCHHHeEe
Confidence 8899964445666886421 112223322 28999999753221 1146788889999999999
Q ss_pred ccCCCCCCCC------CChHhHHHHHHHHHhcCCCCHHHHHHHHhHHHHHhcC
Q 019335 295 GSDFPYVVPE------CGYKGGREAASLIANEVPLSPSELEWIMGGTIMQLFQ 341 (342)
Q Consensus 295 GSD~P~~~~~------~~~~~~~~~~~~~~~~~~l~~~~~~~I~~~NA~rl~~ 341 (342)
|||+|+..+. ..+..+...++.+....++++++..+++++|++++|+
T Consensus 199 ~TD~p~~~~~~~~~~~~~p~~i~~~~~~~a~~~g~~~~~~~~~~~~N~~~~~~ 251 (252)
T TIGR00010 199 ETDSPYLAPVPYRGKRNEPAFVRYTVEAIAEIKGMDVEELAQITTKNAKRLFG 251 (252)
T ss_pred cccCCCCCCCCCCCCCCCChhHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHhC
Confidence 9999985421 1111222233333334699999999999999999996
No 7
>COG0084 TatD Mg-dependent DNase [DNA replication, recombination, and repair]
Probab=99.92 E-value=5.4e-23 Score=184.49 Aligned_cols=239 Identities=21% Similarity=0.235 Sum_probs=183.8
Q ss_pred CCeeeeeeeccCCCCccCCCCCCCCCCCCCCCCChHHHHHHhHHCCCceEEEeCCCCCccchHHHHHHHHhCCCcEEEEE
Q 019335 60 VKIIDSHLHVWASPEEAADKFPYFPGQEPTLPGHVDFLLQCMEEASVDGALIVQPINHKFDHSLVTSVLKKYPSKFVGCC 139 (342)
Q Consensus 60 ~~iID~H~Hl~~~~~~~~~~~p~~~~~~~~~~~~~~~ll~~md~~GI~~~v~~~~~~~~~~N~~~~~~~~~~p~r~~g~~ 139 (342)
|++||+|+|+... .+..+.+++++...+.||.+.++++.. ..++..+++++++|| .++..+
T Consensus 1 ~~liDtH~HL~~~----------------~~~~d~~~vi~~a~~~gv~~~~~~g~~--~~~~~~~~~la~~y~-~v~~~~ 61 (256)
T COG0084 1 MMLIDTHCHLDFE----------------EFDEDRDEVIARAREAGVKKMVVVGTD--LEDFKRALELAEKYP-NVYAAV 61 (256)
T ss_pred CccEEeeeCCCch----------------hhcCCHHHHHHHHHHcCCcEEEEeecC--HHHHHHHHHHHHhCC-CeEEEE
Confidence 6899999999742 135688999999999999999988643 345678999999999 678888
Q ss_pred EcCCCC--c--chHHHHHHHHHhc-CCceEEEecCCC--CCCC--CcCCcHHHHHHHHHHhhhCCeEEEEeccCCCCCHH
Q 019335 140 LANPAE--D--VIGIKQLEQLILK-DGFRAVRFNPYL--WPSG--QQMTNEVGKAMFSKAGELGVPVGFMCMKGLNLHIS 210 (342)
Q Consensus 140 ~i~p~~--~--~~~~~eler~~~~-~g~~Gvk~~~~~--~~~g--~~l~~~~~~~~~~~a~e~~lpv~iH~~~~~~~~~~ 210 (342)
+++|.+ . ++.+++|++++.. ..+++|.-.... +... ...+...|+.+++.|.++++||.+|++++ ..
T Consensus 62 G~HP~~~~~~~~~~~~~l~~~~~~~~~vvaIGEiGLDy~~~~~~~~~~Q~~~F~~ql~lA~~~~lPviIH~R~A----~~ 137 (256)
T COG0084 62 GVHPLDADEHSEEDLEELEQLAEHHPKVVAIGEIGLDYYWDKEPDKERQEEVFEAQLELAKELNLPVIIHTRDA----HE 137 (256)
T ss_pred eeCCCccccccHHHHHHHHHHHhcCCCeEEEEecccCccccccccHHHHHHHHHHHHHHHHHcCCCEEEEcccc----HH
Confidence 999987 3 4567889999874 888988866442 1111 12356789999999999999999999853 56
Q ss_pred HHHHHHHhCC-CCcEEecccCCCCCCCCchhhHhHHHHhcccCCCcEEEecCcccccccCCCCCCCchhHHHHHHHhcCC
Q 019335 211 EIEELCTEFP-STTVLLDHLAFCKPPSNDEESLAFSNLLKLSRFPQVYVKFSALFRVSRMPFPYQDLSSPLSQVVSSFGA 289 (342)
Q Consensus 211 ~l~~l~~~~P-~lk~vl~H~G~~~p~~~~~~~~~~~~~~~l~~~~Nvy~~~S~~~~~~~~~~~~~~~~~~l~~~i~~~G~ 289 (342)
++.+++++++ ..+.|+ |+..+. .+.+.++.+.+ +|+.+||..++.+ ...++++++.++.
T Consensus 138 d~~~iL~~~~~~~~gi~-HcFsGs----------~e~a~~~~d~G-~yisisG~itfk~--------a~~~~ev~~~iPl 197 (256)
T COG0084 138 DTLEILKEEGAPVGGVL-HCFSGS----------AEEARKLLDLG-FYISISGIVTFKN--------AEKLREVARELPL 197 (256)
T ss_pred HHHHHHHhcCCCCCEEE-EccCCC----------HHHHHHHHHcC-eEEEECceeecCC--------cHHHHHHHHhCCH
Confidence 8999999997 477666 887642 12233344444 9999999987643 2578999999999
Q ss_pred CcEEEccCCCCCCCCC------ChHhHHHHHHHHHhcCCCCHHHHHHHHhHHHHHhcC
Q 019335 290 NRVMWGSDFPYVVPEC------GYKGGREAASLIANEVPLSPSELEWIMGGTIMQLFQ 341 (342)
Q Consensus 290 dRilfGSD~P~~~~~~------~~~~~~~~~~~~~~~~~l~~~~~~~I~~~NA~rl~~ 341 (342)
||||..||.|+..+.. ........++.+++..+++.++..++.++|+++||+
T Consensus 198 drLL~ETDsPyl~P~p~rGkrNeP~~v~~v~~~iAelk~~~~eeva~~t~~N~~~lf~ 255 (256)
T COG0084 198 DRLLLETDAPYLAPVPYRGKRNEPAYVRHVAEKLAELKGISAEEVAEITTENAKRLFG 255 (256)
T ss_pred hHeEeccCCCCCCCcCCCCCCCCchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhc
Confidence 9999999999997741 122244555566666799999999999999999997
No 8
>KOG4245 consensus Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=99.92 E-value=4e-25 Score=184.79 Aligned_cols=235 Identities=14% Similarity=0.197 Sum_probs=178.1
Q ss_pred CChHHHHHHhHHCCCceEEEeCC----C----------CCccchHHHHHHHHhCCCcEEEEEEcCCCCcchHHHHHHHHH
Q 019335 92 GHVDFLLQCMEEASVDGALIVQP----I----------NHKFDHSLVTSVLKKYPSKFVGCCLANPAEDVIGIKQLEQLI 157 (342)
Q Consensus 92 ~~~~~ll~~md~~GI~~~v~~~~----~----------~~~~~N~~~~~~~~~~p~r~~g~~~i~p~~~~~~~~eler~~ 157 (342)
.+.++.++.|.+++|....+... + ..++-|+.++..|++||+||+|.+.++..+++.+++|++||+
T Consensus 10 fdte~ria~ink~nvnvqclstv~~~~s~~akpadt~~l~~~lnddl~ae~~kfp~r~v~lgtlpmn~~e~avee~~rcv 89 (297)
T KOG4245|consen 10 FDTEERIADINKANVNVQCLSTVLEKFSKKAKPADTEILAQFLNDDLAAECQKFPDRFVGLGTLPMNAPELAVEEMERCV 89 (297)
T ss_pred ccHHHHhhhhhhcccchhHHHHHHHHHhcccCchhHHHHHHHhccHHHHHHHhcchhccccCccCCcCHHHHHHHHHHHH
Confidence 46789999999999877765431 0 123458888999999999999999999999999999999999
Q ss_pred hcCCceEEEecCCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEEecc-----CC------CC---CH---------HHHHH
Q 019335 158 LKDGFRAVRFNPYLWPSGQQMTNEVGKAMFSKAGELGVPVGFMCMK-----GL------NL---HI---------SEIEE 214 (342)
Q Consensus 158 ~~~g~~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH~~~-----~~------~~---~~---------~~l~~ 214 (342)
++.|++|+.+.... ....++...+.|+|+.|+++...+++|..+ |. |+ .+ ..+.+
T Consensus 90 k~lg~~g~eigshv--~e~~ld~~d~~ply~~~e~l~~~lfvhpwdmhmwdgrl~kywlpwlvgmpaeta~aics~img~ 167 (297)
T KOG4245|consen 90 KELGFKGFEIGSHV--AEKDLDAQDFFPLYAAAEELKCSLFVHPWDMHMWDGRLAKYWLPWLVGMPAETAIAICSMIMGG 167 (297)
T ss_pred HHcCCCceeecccc--ccccCchHHHhHHHHHHHhheeeEEecchhhcccccchHhhhhHHHhCCchHHHHHHHHHHHhh
Confidence 99999999988654 246788899999999999999999999753 21 11 01 13578
Q ss_pred HHHhCCCCcEEecccCCCCCCCCchhhHhHHHHhcccC-----CCcEEEecCcccccccCCCCCCCchhHHHHHHHhcCC
Q 019335 215 LCTEFPSTTVLLDHLAFCKPPSNDEESLAFSNLLKLSR-----FPQVYVKFSALFRVSRMPFPYQDLSSPLSQVVSSFGA 289 (342)
Q Consensus 215 l~~~~P~lk~vl~H~G~~~p~~~~~~~~~~~~~~~l~~-----~~Nvy~~~S~~~~~~~~~~~~~~~~~~l~~~i~~~G~ 289 (342)
++..||++|++++|.|+.+|.+.++.+..|.--.+|.. .||-|..+ ++..+- .. ....++-+++.+|.
T Consensus 168 i~~~fpklklcfahggga~p~~~grishg~n~rpdlca~~~~~~p~k~~g~--~~tdal----vh-dp~alell~~tigk 240 (297)
T KOG4245|consen 168 IFEKFPKLKLCFAHGGGAFPFIRGRISHGFNMRPDLCAGDCKMAPKKLDGL--FWTDAL----VH-DPKALELLIDTIGK 240 (297)
T ss_pred HHHhCchheeeeecCCcccceeeeeeccCccCCcchhcCcCCCChhhhccc--hhhhhh----hc-CcHHHHHHHHhhcc
Confidence 99999999999999999999877766666642223321 33333221 111111 11 12578999999999
Q ss_pred CcEEEccCCCCCCCCCChHhHHHHHHHHHhcCCCCHHHHHHHHhHHHHHhcC
Q 019335 290 NRVMWGSDFPYVVPECGYKGGREAASLIANEVPLSPSELEWIMGGTIMQLFQ 341 (342)
Q Consensus 290 dRilfGSD~P~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~I~~~NA~rl~~ 341 (342)
|+|+.|||||+...+....+.++.++ .+++++++++.++||.++++
T Consensus 241 d~iilgtdypfplgele~gkliee~~------~f~a~~ke~l~~~nal~~l~ 286 (297)
T KOG4245|consen 241 DHIILGTDYPFPLGELEPGKLIEEME------EFDAEDKEDLKAGNALAFLD 286 (297)
T ss_pred ceEEeccCCCCcCcccccchHHHhhc------ccchhhHHHhhhccchhhcc
Confidence 99999999999887655555554432 68999999999999998874
No 9
>PRK10812 putative DNAse; Provisional
Probab=99.89 E-value=3.5e-21 Score=175.34 Aligned_cols=242 Identities=18% Similarity=0.185 Sum_probs=171.6
Q ss_pred CCeeeeeeeccCCCCccCCCCCCCCCCCCCCCCChHHHHHHhHHCCCceEEEeCCCCCccchHHHHHHHHhCCCcEEEEE
Q 019335 60 VKIIDSHLHVWASPEEAADKFPYFPGQEPTLPGHVDFLLQCMEEASVDGALIVQPINHKFDHSLVTSVLKKYPSKFVGCC 139 (342)
Q Consensus 60 ~~iID~H~Hl~~~~~~~~~~~p~~~~~~~~~~~~~~~ll~~md~~GI~~~v~~~~~~~~~~N~~~~~~~~~~p~r~~g~~ 139 (342)
|++||+|+|+..+. +. .+..+.+++++++.+.||.+.+++.. ...+...+.+++++||+ ++..+
T Consensus 1 ~~~iDtH~Hl~~~~------~~-------~~~~d~~~vl~~a~~~gv~~~~~~~~--~~~~~~~~~~l~~~~~~-v~~~~ 64 (265)
T PRK10812 1 MFLVDSHCHLDGLD------YQ-------SLHKDVDDVLAKAAARDVKFCLAVAT--TLPGYRHMRDLVGERDN-VVFSC 64 (265)
T ss_pred CceEEeccCCCCcc------ch-------hhhcCHHHHHHHHHHcCCCEEEEeCC--CHHHHHHHHHHHhhCCC-eEEEE
Confidence 57899999996421 10 12357899999999999999887754 23456778999999996 66778
Q ss_pred EcCCCCc--chHHHHHHHHHhcCCceEEEecCCCC--C-CCCcCCcHHHHHHHHHHhhhCCeEEEEeccCCCCCHHHHHH
Q 019335 140 LANPAED--VIGIKQLEQLILKDGFRAVRFNPYLW--P-SGQQMTNEVGKAMFSKAGELGVPVGFMCMKGLNLHISEIEE 214 (342)
Q Consensus 140 ~i~p~~~--~~~~~eler~~~~~g~~Gvk~~~~~~--~-~g~~l~~~~~~~~~~~a~e~~lpv~iH~~~~~~~~~~~l~~ 214 (342)
+++|... +..+++|++++....++||.-..... . .....+...|+.+++.|.++|+||.+|+..+ ..++.+
T Consensus 65 GiHP~~~~~~~~~~~l~~~~~~~~vvaIGEiGLD~~~~~~~~~~Q~~vf~~ql~lA~e~~~Pv~iH~r~a----~~~~l~ 140 (265)
T PRK10812 65 GVHPLNQDEPYDVEELRRLAAEEGVVAMGETGLDYYYTPETKVRQQESFRHHIQIGRELNKPVIVHTRDA----RADTLA 140 (265)
T ss_pred EeCCCCCCChhHHHHHHHHhcCCCEEEEEeeecCcCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEeeCc----hHHHHH
Confidence 9999763 33567888887777888886443321 1 1223456789999999999999999999854 246677
Q ss_pred HHHhC--CCCcEEecccCCCCCCCCchhhHhHHHHhcccCCCcEEEecCcccccccCCCCCCCchhHHHHHHHhcCCCcE
Q 019335 215 LCTEF--PSTTVLLDHLAFCKPPSNDEESLAFSNLLKLSRFPQVYVKFSALFRVSRMPFPYQDLSSPLSQVVSSFGANRV 292 (342)
Q Consensus 215 l~~~~--P~lk~vl~H~G~~~p~~~~~~~~~~~~~~~l~~~~Nvy~~~S~~~~~~~~~~~~~~~~~~l~~~i~~~G~dRi 292 (342)
+++++ +..++| .|+..+.. +.+.++.+. ++|+.+++...+.+ ...++++++.++.||+
T Consensus 141 iL~~~~~~~~~~v-~H~fsG~~----------~~a~~~~~~-G~~is~~g~~t~~~--------~~~~~~~~~~ipldrl 200 (265)
T PRK10812 141 ILREEKVTDCGGV-LHCFTEDR----------ETAGKLLDL-GFYISFSGIVTFRN--------AEQLRDAARYVPLDRL 200 (265)
T ss_pred HHHhhcCCCCCEE-EEeecCCH----------HHHHHHHHC-CCEEEECeeeecCc--------cHHHHHHHHhCChhhE
Confidence 77765 334555 48875321 112233333 59999998754321 2578899999999999
Q ss_pred EEccCCCCCCCCC------ChHhHHHHHHHHHhcCCCCHHHHHHHHhHHHHHhcC
Q 019335 293 MWGSDFPYVVPEC------GYKGGREAASLIANEVPLSPSELEWIMGGTIMQLFQ 341 (342)
Q Consensus 293 lfGSD~P~~~~~~------~~~~~~~~~~~~~~~~~l~~~~~~~I~~~NA~rl~~ 341 (342)
|.+||.|+..+.. ........++.+.+..+++.++.++++++|+++||+
T Consensus 201 LlETD~P~~~p~~~~g~~n~P~~i~~v~~~ia~l~g~~~eei~~~~~~N~~~lf~ 255 (265)
T PRK10812 201 LVETDSPYLAPVPHRGKENQPAMVRDVAEYMAVLKGVSVEELAQVTTDNFARLFH 255 (265)
T ss_pred EEecCCCCCCCcCCCCCCCCcHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHC
Confidence 9999999976531 223344444455555689999999999999999996
No 10
>PRK11449 putative deoxyribonuclease YjjV; Provisional
Probab=99.89 E-value=4.1e-21 Score=174.37 Aligned_cols=241 Identities=13% Similarity=0.111 Sum_probs=169.5
Q ss_pred CCCCeeeeeeeccCCCCccCCCCCCCCCCCCCCCCChHHHHHHhHHCCCceEEEeCCCCCccchHHHHHHHHhCCCcEEE
Q 019335 58 SKVKIIDSHLHVWASPEEAADKFPYFPGQEPTLPGHVDFLLQCMEEASVDGALIVQPINHKFDHSLVTSVLKKYPSKFVG 137 (342)
Q Consensus 58 ~~~~iID~H~Hl~~~~~~~~~~~p~~~~~~~~~~~~~~~ll~~md~~GI~~~v~~~~~~~~~~N~~~~~~~~~~p~r~~g 137 (342)
+++.+||+|+|+... . +..+.++.++.+.+.||.+.+++..+ ..+...+++++++||+ ++.
T Consensus 1 ~~~~~iD~HcHl~~~------~----------~~~~~~~~l~~a~~~gv~~~~~~~~~--~~~~~~~~~l~~~~~~-v~~ 61 (258)
T PRK11449 1 MICRFIDTHCHFDFP------P----------FSGDEEASLQRAAQAGVGKIIVPATE--AENFARVLALAERYQP-LYA 61 (258)
T ss_pred CCceEEEeccCCCCh------h----------hccCHHHHHHHHHHCCCCEEEEeeCC--HHHHHHHHHHHHhCCC-EEE
Confidence 456789999999642 1 23578899999999999999887642 3356678899999995 777
Q ss_pred EEEcCCCCc----chHHHHHHHHHhc-C-CceEEEecCCCC-CCC--CcCCcHHHHHHHHHHhhhCCeEEEEeccCCCCC
Q 019335 138 CCLANPAED----VIGIKQLEQLILK-D-GFRAVRFNPYLW-PSG--QQMTNEVGKAMFSKAGELGVPVGFMCMKGLNLH 208 (342)
Q Consensus 138 ~~~i~p~~~----~~~~~eler~~~~-~-g~~Gvk~~~~~~-~~g--~~l~~~~~~~~~~~a~e~~lpv~iH~~~~~~~~ 208 (342)
+.+++|... ++..+++++.+.. . .++||....... ... ...+...|..+++.|.++++||.+|+...
T Consensus 62 ~~GiHP~~~~~~~~~~~~~l~~~l~~~~~~~~aIGEiGLD~~~~~~~~~~Q~~vf~~ql~lA~~~~~Pv~iH~r~a---- 137 (258)
T PRK11449 62 ALGLHPGMLEKHSDVSLDQLQQALERRPAKVVAVGEIGLDLFGDDPQFERQQWLLDEQLKLAKRYDLPVILHSRRT---- 137 (258)
T ss_pred EEeeCcCccccCCHHHHHHHHHHHHhCCCCEEEEEecccCCCCCCCCHHHHHHHHHHHHHHHHHhCCCEEEEecCc----
Confidence 889999762 2345677766542 2 577886553321 111 12355789999999999999999999853
Q ss_pred HHHHHHHHHhCC-CCcEEecccCCCCCCCCchhhHhHHHHhcccCCCcEEEecCcccccccCCCCCCCchhHHHHHHHhc
Q 019335 209 ISEIEELCTEFP-STTVLLDHLAFCKPPSNDEESLAFSNLLKLSRFPQVYVKFSALFRVSRMPFPYQDLSSPLSQVVSSF 287 (342)
Q Consensus 209 ~~~l~~l~~~~P-~lk~vl~H~G~~~p~~~~~~~~~~~~~~~l~~~~Nvy~~~S~~~~~~~~~~~~~~~~~~l~~~i~~~ 287 (342)
..++.++++++. ..+.|+ |+..+.+ +.+.++.+. ++|+.+++...+.+ ...++++++.+
T Consensus 138 ~~~~~~il~~~~~~~~~i~-H~fsG~~----------~~a~~~l~~-G~~iS~~g~it~~~--------~~~~~~~~~~i 197 (258)
T PRK11449 138 HDKLAMHLKRHDLPRTGVV-HGFSGSL----------QQAERFVQL-GYKIGVGGTITYPR--------ASKTRDVIAKL 197 (258)
T ss_pred cHHHHHHHHhcCCCCCeEE-EcCCCCH----------HHHHHHHHC-CCEEEeCccccccC--------cHHHHHHHHhC
Confidence 356777777763 234555 6655321 122223333 58999998765432 24689999999
Q ss_pred CCCcEEEccCCCCCCCC------CChHhHHHHHHHHHhcCCCCHHHHHHHHhHHHHHhcC
Q 019335 288 GANRVMWGSDFPYVVPE------CGYKGGREAASLIANEVPLSPSELEWIMGGTIMQLFQ 341 (342)
Q Consensus 288 G~dRilfGSD~P~~~~~------~~~~~~~~~~~~~~~~~~l~~~~~~~I~~~NA~rl~~ 341 (342)
+.||||++||+|+..+. .......+.++.+++..+.+.++..+++++|+++||+
T Consensus 198 pldriL~ETD~P~l~p~~~~~~~n~p~~~~~~~~~ia~l~~~~~~el~~~~~~N~~~lf~ 257 (258)
T PRK11449 198 PLASLLLETDAPDMPLNGFQGQPNRPEQAARVFDVLCELRPEPADEIAEVLLNNTYTLFN 257 (258)
T ss_pred ChhhEEEecCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhC
Confidence 99999999999997642 1123344555555666789999999999999999997
No 11
>PRK10425 DNase TatD; Provisional
Probab=99.87 E-value=4.8e-20 Score=167.15 Aligned_cols=238 Identities=16% Similarity=0.145 Sum_probs=168.5
Q ss_pred eeeeeeeccCCCCccCCCCCCCCCCCCCCCCChHHHHHHhHHCCCceEEEeCCCCCccchHHHHHHHHhCCCcEEEEEEc
Q 019335 62 IIDSHLHVWASPEEAADKFPYFPGQEPTLPGHVDFLLQCMEEASVDGALIVQPINHKFDHSLVTSVLKKYPSKFVGCCLA 141 (342)
Q Consensus 62 iID~H~Hl~~~~~~~~~~~p~~~~~~~~~~~~~~~ll~~md~~GI~~~v~~~~~~~~~~N~~~~~~~~~~p~r~~g~~~i 141 (342)
+||+|+|+... . +..+.+++++.+.+.||.+.+++... ..+...+.+++++||+ ++..+++
T Consensus 1 ~iDtH~HL~~~------~----------~~~d~~~vl~~a~~~gv~~~i~~~~~--~~~~~~~~~l~~~~~~-v~~~~Gi 61 (258)
T PRK10425 1 MFDIGVNLTSS------Q----------FAKDRDDVVARAFAAGVNGMLITGTN--LRESQQAQKLARQYPS-CWSTAGV 61 (258)
T ss_pred CEEeeeCcCCh------h----------hhccHHHHHHHHHHCCCCEEEEeCCC--HHHHHHHHHHHHhCCC-EEEEEEe
Confidence 58999999642 1 13478999999999999998887643 2345668899999997 7778899
Q ss_pred CCCCc----chHHHHHHHHHhcCCceEEEecCCCC--CC-CCcCCcHHHHHHHHHHhhhCCeEEEEeccCCCCCHHHHHH
Q 019335 142 NPAED----VIGIKQLEQLILKDGFRAVRFNPYLW--PS-GQQMTNEVGKAMFSKAGELGVPVGFMCMKGLNLHISEIEE 214 (342)
Q Consensus 142 ~p~~~----~~~~~eler~~~~~g~~Gvk~~~~~~--~~-g~~l~~~~~~~~~~~a~e~~lpv~iH~~~~~~~~~~~l~~ 214 (342)
+|... ++.+++|+++++...++||.-..... .. ....+...|+.+++.|.++++||.+|+.+. ..++.+
T Consensus 62 HP~~~~~~~~~~~~~l~~~~~~~~~vaIGEiGLDy~~~~~~~~~Q~~vF~~ql~lA~~~~~Pv~iH~r~a----~~~~l~ 137 (258)
T PRK10425 62 HPHDSSQWQAATEEAIIELAAQPEVVAIGECGLDFNRNFSTPEEQERAFVAQLAIAAELNMPVFMHCRDA----HERFMA 137 (258)
T ss_pred CcCccccCCHHHHHHHHHhccCCCEEEEeeeeeccccCCCCHHHHHHHHHHHHHHHHHhCCCeEEEEeCc----hHHHHH
Confidence 99763 33466777777666777776443321 10 112345789999999999999999999853 367777
Q ss_pred HHHhC-CCC-cEEecccCCCCCCCCchhhHhHHHHhcccCCCcEEEecCcccccccCCCCCCCchhHHHHHHHhcCCCcE
Q 019335 215 LCTEF-PST-TVLLDHLAFCKPPSNDEESLAFSNLLKLSRFPQVYVKFSALFRVSRMPFPYQDLSSPLSQVVSSFGANRV 292 (342)
Q Consensus 215 l~~~~-P~l-k~vl~H~G~~~p~~~~~~~~~~~~~~~l~~~~Nvy~~~S~~~~~~~~~~~~~~~~~~l~~~i~~~G~dRi 292 (342)
+++++ |.. ++|+ |+..+.. +.+.++.+. +.|+.+++....... ...++++++.++.|||
T Consensus 138 iL~~~~~~~~~~i~-H~fsG~~----------~~~~~~l~~-G~~~si~g~i~~~~~-------~~~~~~~~~~ipldrl 198 (258)
T PRK10425 138 LLEPWLDKLPGAVL-HCFTGTR----------EEMQACLAR-GLYIGITGWVCDERR-------GLELRELLPLIPAERL 198 (258)
T ss_pred HHHHhccCCCCeEE-EecCCCH----------HHHHHHHHC-CCEEEECceeecccc-------cHHHHHHHHhCChHHE
Confidence 77776 444 5555 8876421 122233333 699999986543221 1368899999999999
Q ss_pred EEccCCCCCCCC----------CChHhHHHHHHHHHhcCCCCHHHHHHHHhHHHHHhcC
Q 019335 293 MWGSDFPYVVPE----------CGYKGGREAASLIANEVPLSPSELEWIMGGTIMQLFQ 341 (342)
Q Consensus 293 lfGSD~P~~~~~----------~~~~~~~~~~~~~~~~~~l~~~~~~~I~~~NA~rl~~ 341 (342)
|..||.|+..+. .........++.+++..+++.++..+++++|+++||+
T Consensus 199 LlETDaP~l~P~~~~~~~~~~~n~P~~i~~v~~~iA~l~~~~~~~v~~~~~~N~~~lf~ 257 (258)
T PRK10425 199 LLETDAPYLLPRDLTPKPASRRNEPAFLPHILQRIAHWRGEDAAWLAATTDANARTLFG 257 (258)
T ss_pred EEeccCCCCCCCCcCCCCCCCCCCcHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhC
Confidence 999999997542 1122344455566666789999999999999999997
No 12
>PF01026 TatD_DNase: TatD related DNase The Pfam entry finds members not in the Prosite definition.; InterPro: IPR001130 This family of proteins are related to a large superfamily of metalloenzymes []. TatD, a member of this family has been shown experimentally to be a DNase enzyme []. Allantoinase 3.5.2.5 from EC, N-isopropylammelide isopropyl amidohydrolase 3.5.1 from EC and the SCN1 protein from fission yeast belong to this family.; GO: 0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters; PDB: 3E2V_B 1XWY_A 3GUW_D 3RCM_A 1ZZM_A 2XIO_A 1J6O_A 2GZX_A 3IPW_A 2Y1H_A ....
Probab=99.84 E-value=1.2e-19 Score=165.03 Aligned_cols=237 Identities=22% Similarity=0.285 Sum_probs=162.6
Q ss_pred eeeeeeccCCCCccCCCCCCCCCCCCCCCCChHHHHHHhHHCCCceEEEeCCCCCccchHHHHHHHHhCCCcEEEEEEcC
Q 019335 63 IDSHLHVWASPEEAADKFPYFPGQEPTLPGHVDFLLQCMEEASVDGALIVQPINHKFDHSLVTSVLKKYPSKFVGCCLAN 142 (342)
Q Consensus 63 ID~H~Hl~~~~~~~~~~~p~~~~~~~~~~~~~~~ll~~md~~GI~~~v~~~~~~~~~~N~~~~~~~~~~p~r~~g~~~i~ 142 (342)
||+|+|+.+. . +..+.++.++.+.+.||...+.++... .+...+.++.+++|++++.+.+++
T Consensus 1 iD~H~Hl~~~------~----------~~~~~~~~~~~~~~~g~~~~i~~~~~~--~~~~~~~~~~~~~~~~v~~~~GiH 62 (255)
T PF01026_consen 1 IDAHCHLDSP------R----------FEEDRPEVLERAREAGVSAIIIVSTDP--EDWERVLELASQYPDRVYPALGIH 62 (255)
T ss_dssp EEEEE-TTSG------G----------GTTTHHHHHHHHHHTTEEEEEEEESSH--HHHHHHHHHHHHTTTEEEEEE---
T ss_pred CcCccCCCCh------h----------hCcCHHHHHHHHHHcCCCEEEEcCCCH--HHhHHHHHHHhcCCCeEEEEecCC
Confidence 8999999751 1 134678888999999999888765432 244578888889999999999999
Q ss_pred CCCcc----hHHHHHHHH--HhcCCceEEEecCCCC-C---CCCcCCcHHHHHHHHHHhhhCCeEEEEeccCCCCCHHHH
Q 019335 143 PAEDV----IGIKQLEQL--ILKDGFRAVRFNPYLW-P---SGQQMTNEVGKAMFSKAGELGVPVGFMCMKGLNLHISEI 212 (342)
Q Consensus 143 p~~~~----~~~~eler~--~~~~g~~Gvk~~~~~~-~---~g~~l~~~~~~~~~~~a~e~~lpv~iH~~~~~~~~~~~l 212 (342)
|.... +..++|+++ +....++||....... . .....+...|..+++.|.++++||.+|+.. .-.++
T Consensus 63 P~~~~~~~~~~~~~l~~l~~~~~~~~~aIGEiGLD~~~~~~~~~~~Q~~vF~~ql~lA~~~~~pv~iH~r~----a~~~~ 138 (255)
T PF01026_consen 63 PWEAHEVNEEDLEELEELINLNRPKVVAIGEIGLDYYWRNEEDKEVQEEVFERQLELAKELNLPVSIHCRK----AHEEL 138 (255)
T ss_dssp GGGGGGHSHHHHHHHHHHHHHTSTTEEEEEEEEEETTTTSSSGHHHHHHHHHHHHHHHHHHTCEEEEEEES----HHHHH
T ss_pred cchhhhhhHHHHHHHHHHHHhccccceeeeeeccCcccccCCcHHHHHHHHHHHHHHHHHhCCcEEEecCC----cHHHH
Confidence 97632 345667776 6778888886443321 1 112345678999999999999999999985 24678
Q ss_pred HHHHHhCC--CCcEEecccCCCCCCCCchhhHhHHHHhcccCCCcEEEecCcccccccCCCCCCCchhHHHHHHHhcCCC
Q 019335 213 EELCTEFP--STTVLLDHLAFCKPPSNDEESLAFSNLLKLSRFPQVYVKFSALFRVSRMPFPYQDLSSPLSQVVSSFGAN 290 (342)
Q Consensus 213 ~~l~~~~P--~lk~vl~H~G~~~p~~~~~~~~~~~~~~~l~~~~Nvy~~~S~~~~~~~~~~~~~~~~~~l~~~i~~~G~d 290 (342)
.++++++. +.++|+ |+..+. .+.+.++.+. ++|+.+|+...... .+..+++++.++.|
T Consensus 139 l~il~~~~~~~~~~i~-H~f~g~----------~~~~~~~~~~-g~~~S~~~~~~~~~--------~~~~~~~~~~ip~d 198 (255)
T PF01026_consen 139 LEILKEYGPPNLRVIF-HCFSGS----------PEEAKKFLDL-GCYFSFSGAITFKN--------SKKVRELIKAIPLD 198 (255)
T ss_dssp HHHHHHTTGGTSEEEE-TT--S-----------HHHHHHHHHT-TEEEEEEGGGGSTT--------SHHHHHHHHHS-GG
T ss_pred HHHHHhccccceeEEE-ecCCCC----------HHHHHHHHhc-CceEEecccccccc--------cHHHHHHHhcCChh
Confidence 88888885 446666 764421 1222222222 79999999754321 25688999999999
Q ss_pred cEEEccCCCCCCCC------CChHhHHHHHHHHHhcCCCCHHHHHHHHhHHHHHhcC
Q 019335 291 RVMWGSDFPYVVPE------CGYKGGREAASLIANEVPLSPSELEWIMGGTIMQLFQ 341 (342)
Q Consensus 291 RilfGSD~P~~~~~------~~~~~~~~~~~~~~~~~~l~~~~~~~I~~~NA~rl~~ 341 (342)
|||.+||.|+..+. .......+.++.+.+..+++.++..+++++|++||||
T Consensus 199 rillETD~P~~~~~~~~~~~~~p~~i~~~~~~la~~~~~~~e~~~~~~~~N~~r~f~ 255 (255)
T PF01026_consen 199 RILLETDAPYLAPDPYRGKPNEPSNIPKVAQALAEIKGISLEELAQIIYENAKRLFG 255 (255)
T ss_dssp GEEEE-BTTSSECTTSTTSE--GGGHHHHHHHHHHHHTSTHHHHHHHHHHHHHHHHT
T ss_pred hEEEcCCCCcCCccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhC
Confidence 99999999997651 1223344555555555689999999999999999996
No 13
>cd01294 DHOase Dihydroorotase (DHOase) catalyzes the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in the pyrimidine biosynthesis. In contrast to the large polyfunctional CAD proteins of higher organisms, this group of DHOases is monofunctional and mainly dimeric.
Probab=99.68 E-value=1.4e-14 Score=136.86 Aligned_cols=247 Identities=15% Similarity=0.124 Sum_probs=161.3
Q ss_pred CeeeeeeeccCCCCccCCCCCCCCCCCCCCCCChHHHHHHhHHCCCceEEEeCCC---C-Cc-cchHHHHHHHHhC-CCc
Q 019335 61 KIIDSHLHVWASPEEAADKFPYFPGQEPTLPGHVDFLLQCMEEASVDGALIVQPI---N-HK-FDHSLVTSVLKKY-PSK 134 (342)
Q Consensus 61 ~iID~H~Hl~~~~~~~~~~~p~~~~~~~~~~~~~~~ll~~md~~GI~~~v~~~~~---~-~~-~~N~~~~~~~~~~-p~r 134 (342)
-.||.|+|+-.+ .+.....+.|++.| +.+|.++.. . .. ..|++..+..+++ |.+
T Consensus 5 g~iD~h~h~~~~-------------------~~~~~~~~aa~~gG-Ttvv~mpnt~P~~~~~~~~~~~~~~~~~~~~~~~ 64 (335)
T cd01294 5 RPDDMHLHLRDG-------------------AMLKLVLPYTARGF-SRAIVMPNLKPPVTTTADALAYRERILAADPGPN 64 (335)
T ss_pred CcceeEecCCCc-------------------hHHHHHHHHHHhCC-CEEEECCCCCCCCCCHHHHHHHHHHHHhcCCCCc
Confidence 469999998531 24567778999999 988887521 1 11 1367777888888 788
Q ss_pred EEEEEEcCCCCcchHHHHHHHHHhcCCceEEEecCCCC--CCCCcC-CcHHHHHHHHHHhhhCCeEEEEeccCCC-C---
Q 019335 135 FVGCCLANPAEDVIGIKQLEQLILKDGFRAVRFNPYLW--PSGQQM-TNEVGKAMFSKAGELGVPVGFMCMKGLN-L--- 207 (342)
Q Consensus 135 ~~g~~~i~p~~~~~~~~eler~~~~~g~~Gvk~~~~~~--~~g~~l-~~~~~~~~~~~a~e~~lpv~iH~~~~~~-~--- 207 (342)
|.+++.+++.... ..++++++++..|++|+|+++... ..+..+ +++.+.++|++|+++|+||.+|+.+..- .
T Consensus 65 ~~~~~~i~~~~~~-~~~el~~~~~~~G~~g~Klf~~~~~~~~~~~~~d~~~l~~~~e~~~~~g~~V~vHaE~~~l~~~~~ 143 (335)
T cd01294 65 FTPLMTLYLTENT-TPEELREAKKKGGIRGVKLYPAGATTNSQGGVTDLEKIYPVLEAMQKLGMPLLVHGEVPDFKIDVL 143 (335)
T ss_pred EEEEEEEeccCCC-CHHHHHHHHHhCCceEEEEecCCCccCCCCCcCCHHHHHHHHHHHHHcCCeEEEecCCCcccccch
Confidence 9888887665432 458999997666999999986421 112222 5689999999999999999999975311 1
Q ss_pred -----CHHHHHHHHHhCCCCcEEecccCCCCCCCCchhhHhHHHHhcccCCCcEEEecCcccccc------c---C----
Q 019335 208 -----HISEIEELCTEFPSTTVLLDHLAFCKPPSNDEESLAFSNLLKLSRFPQVYVKFSALFRVS------R---M---- 269 (342)
Q Consensus 208 -----~~~~l~~l~~~~P~lk~vl~H~G~~~p~~~~~~~~~~~~~~~l~~~~Nvy~~~S~~~~~~------~---~---- 269 (342)
....+..++++||++|+++.|++.. ..++.+.+. +. ||+++++.-+... . .
T Consensus 144 ~~e~~~~~~~~~lA~~~p~~~v~i~Hvst~---------~~~~~i~~a-k~-~vt~Et~ph~L~l~~~~~~~~~~g~~~k 212 (335)
T cd01294 144 DREAKFIPVLEPLAQRFPKLKIVLEHITTA---------DAVEYVKSC-NE-NVAATITPHHLLLTRDDLLGGGLNPHLY 212 (335)
T ss_pred hhHHHHHHHHHHHHHHcCCCeEEEecccHH---------HHHHHHHhC-CC-CcEEEEchhHheeeHHHhcCCCCCCCeE
Confidence 1246888999999999999999862 122222222 22 8999987443210 1 0
Q ss_pred -CCCCCCchhHHHHHHHhc--CCCcEEEccCC-CCCCCCC-------ChHh---HHHHHHHHHhcCCCCHHHHHHHHhHH
Q 019335 270 -PFPYQDLSSPLSQVVSSF--GANRVMWGSDF-PYVVPEC-------GYKG---GREAASLIANEVPLSPSELEWIMGGT 335 (342)
Q Consensus 270 -~~~~~~~~~~l~~~i~~~--G~dRilfGSD~-P~~~~~~-------~~~~---~~~~~~~~~~~~~l~~~~~~~I~~~N 335 (342)
..|... ..-...+++.+ |.-.+++|||. |+...+. +... .+..+....+ ..++-+..-++++.|
T Consensus 213 ~~PPlR~-~~d~~~L~~~l~~G~id~~i~SDHaP~~~~~K~~~~g~~Gi~~~~~~l~~~~~~~~-~~l~l~~~v~~~s~n 290 (335)
T cd01294 213 CKPVAKR-PEDREALRKAATSGHPKFFLGSDSAPHPKSNKESSCGCAGIFSAPIALPYLAEVFE-EHNALDKLEAFASDN 290 (335)
T ss_pred EcCCCCC-HHHHHHHHHHHHcCCCCeEEECCCCCCCCccccCCCCCccccCHHHHHHHHHHHHh-ccCCHHHHHHHHHhH
Confidence 112221 23334445544 55566799994 7643221 1111 2222222233 379999999999999
Q ss_pred HHHhcC
Q 019335 336 IMQLFQ 341 (342)
Q Consensus 336 A~rl~~ 341 (342)
..|+||
T Consensus 291 PA~i~g 296 (335)
T cd01294 291 GPNFYG 296 (335)
T ss_pred HHHHhC
Confidence 999996
No 14
>cd00530 PTE Phosphotriesterase (PTE) catalyzes the hydrolysis of organophosphate nerve agents, including the chemical warfare agents VX, soman, and sarin as well as the insecticide paraoxon. PTE exists as a homodimer with one active site per monomer. The active site is located next to a binuclear metal center, at the C-terminal end of a TIM alpha- beta barrel motif. The native enzyme contains two zinc ions at the active site however these can be replaced with other metals such as cobalt, cadmium, nickel or manganese and the enzyme remains active.
Probab=99.59 E-value=1.5e-13 Score=127.45 Aligned_cols=233 Identities=14% Similarity=0.077 Sum_probs=146.5
Q ss_pred HHHHHhHHCCCceEEEeCCCCCccchHHHHHHHHhCCCcEEEEEEcCCCCc------chHHHHHHH----HH----hcCC
Q 019335 96 FLLQCMEEASVDGALIVQPINHKFDHSLVTSVLKKYPSKFVGCCLANPAED------VIGIKQLEQ----LI----LKDG 161 (342)
Q Consensus 96 ~ll~~md~~GI~~~v~~~~~~~~~~N~~~~~~~~~~p~r~~g~~~i~p~~~------~~~~~eler----~~----~~~g 161 (342)
..++++.++||+..|.......+.+.+.+.+++++++-+++...+++|... +...+++.+ .+ ...+
T Consensus 36 ~~~~~~~~~Gvttiv~~~~~~~~~~~~~~~~~~~~~g~~v~~~~G~hp~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~ 115 (293)
T cd00530 36 EELKRFRAHGGRTIVDATPPGIGRDVEKLAEVARATGVNIVAATGFYKDAFYPEWVRLRSVEELTDMLIREIEEGIEGTG 115 (293)
T ss_pred HHHHHHHHcCCCeEEEcCCcccCcCHHHHHHHHHHhCCcEEEecccCCCccChHHHhhCCHHHHHHHHHHHHHhccccCC
Confidence 345677889999888776433345678889999998756776677777541 112233322 11 1233
Q ss_pred ce--EEEecCCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEEeccCCCCCHHHHHHHHHhC--CCCcEEecccCCCCCCCC
Q 019335 162 FR--AVRFNPYLWPSGQQMTNEVGKAMFSKAGELGVPVGFMCMKGLNLHISEIEELCTEF--PSTTVLLDHLAFCKPPSN 237 (342)
Q Consensus 162 ~~--Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH~~~~~~~~~~~l~~l~~~~--P~lk~vl~H~G~~~p~~~ 237 (342)
++ +|+...... .....+...|....+.|.++|+||.+|++.+. ....++.+++++. +.-++++.|+....
T Consensus 116 i~~~~IGEigld~-~~~~~q~~~f~~~~~lA~~~~~Pv~iH~~~~~-~~~~~~l~~l~~~g~~~~~~vi~H~~~~~---- 189 (293)
T cd00530 116 IKAGIIKEAGGSP-AITPLEEKVLRAAARAQKETGVPISTHTQAGL-TMGLEQLRILEEEGVDPSKVVIGHLDRND---- 189 (293)
T ss_pred cCceEEEEeecCC-CCCHHHHHHHHHHHHHHHHHCCeEEEcCCCCc-cccHHHHHHHHHcCCChhheEEeCCCCCC----
Confidence 32 243332211 12234456889999999999999999998531 1233445555543 55578999998421
Q ss_pred chhhHhHHHHhcccCCCcEEEecCcccccccCC-CCCCCchhHHHHHHHhcCCCcEEEccCCCCCCCC------CChHhH
Q 019335 238 DEESLAFSNLLKLSRFPQVYVKFSALFRVSRMP-FPYQDLSSPLSQVVSSFGANRVMWGSDFPYVVPE------CGYKGG 310 (342)
Q Consensus 238 ~~~~~~~~~~~~l~~~~Nvy~~~S~~~~~~~~~-~~~~~~~~~l~~~i~~~G~dRilfGSD~P~~~~~------~~~~~~ 310 (342)
..+.+.++.+. ++|+++++.......+ .+.......++++++..+.||||++||.|+..+. ..+...
T Consensus 190 -----~~~~~~~~~~~-G~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~ill~TD~p~~~~~~~~~~~~~~~~~ 263 (293)
T cd00530 190 -----DPDYLLKIAAL-GAYLEFDGIGKDKIFGYPSDETRADAVKALIDEGYGDRLLLSHDVFRKSYLEKRYGGHGYDYI 263 (293)
T ss_pred -----CHHHHHHHHhC-CCEEEeCCCCcccccCCCCHHHHHHHHHHHHHCCCcCCEEEeCCcCchhhhhhccCCCChHHH
Confidence 11223344444 4999998765432000 0111234568888999889999999999996542 123333
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHhHHHHHhc
Q 019335 311 REAASLIANEVPLSPSELEWIMGGTIMQLF 340 (342)
Q Consensus 311 ~~~~~~~~~~~~l~~~~~~~I~~~NA~rl~ 340 (342)
...+..+++..+++.++.++++.+|++++|
T Consensus 264 ~~~~~~~~~~~g~~~e~i~~~~~~N~~~lf 293 (293)
T cd00530 264 LTRFIPRLRERGVTEEQLDTILVENPARFL 293 (293)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHCHHHhC
Confidence 445555556689999999999999999997
No 15
>KOG3020 consensus TatD-related DNase [Replication, recombination and repair]
Probab=99.48 E-value=6.6e-12 Score=113.93 Aligned_cols=238 Identities=17% Similarity=0.181 Sum_probs=165.3
Q ss_pred CeeeeeeeccCCCCccCCCCCCCCCCCCCCCCChHHHHHHhHHCCCceEEEeCCCCCccchHHHHHHHHhCCCcEEEEEE
Q 019335 61 KIIDSHLHVWASPEEAADKFPYFPGQEPTLPGHVDFLLQCMEEASVDGALIVQPINHKFDHSLVTSVLKKYPSKFVGCCL 140 (342)
Q Consensus 61 ~iID~H~Hl~~~~~~~~~~~p~~~~~~~~~~~~~~~ll~~md~~GI~~~v~~~~~~~~~~N~~~~~~~~~~p~r~~g~~~ 140 (342)
+.+|.|.|+.... ...+.++.+......||...+++..+ ..+-+++.+++++||++++.+.+
T Consensus 17 ~~~~~~~~~~~~~----------------~~~d~s~v~~~a~~~~v~~~~v~gt~--~~d~~~~~~l~~~y~~~v~~t~G 78 (296)
T KOG3020|consen 17 MLEDIYCHIQAHP----------------SDSDASQVLERAVQAGVSKLIVTGTS--LKDSKEALELAEKYPGSVYPTFG 78 (296)
T ss_pred hhchhhhccccCC----------------CCccchHHHHHHHhccceEEEEeCCC--cchHHHHHHHHhhCCCceeeccC
Confidence 7899999997542 13456678888899999999998763 34567899999999999999999
Q ss_pred cCCCCcc---------hHHHHHHHHHhc---CCceEEEecCCCCC-C---CCcCCcHHHHHHHHHHhhhCCeEEEEeccC
Q 019335 141 ANPAEDV---------IGIKQLEQLILK---DGFRAVRFNPYLWP-S---GQQMTNEVGKAMFSKAGELGVPVGFMCMKG 204 (342)
Q Consensus 141 i~p~~~~---------~~~~eler~~~~---~g~~Gvk~~~~~~~-~---g~~l~~~~~~~~~~~a~e~~lpv~iH~~~~ 204 (342)
++|++.. ...++|...+++ ..++.|.-...... . ....+.-.|+..|++|.++.+|+.+|+...
T Consensus 79 ~HP~~~~~~~~~~~~~~~~~~L~~~~~~~~~~k~vAiGEcGLD~~r~~~~~~~~Qk~vFekQl~LA~~~~~Pl~iH~r~a 158 (296)
T KOG3020|consen 79 VHPHFSQEFSDQSRKEKFLDTLLSIIENGFLPKVVAIGECGLDYDRLQFSDKEEQKTVFEKQLDLAKRLKLPLFIHCRSA 158 (296)
T ss_pred cCCCcccchhhccchhhHHHHHHHHHhhcccCCeEEeeccccccchhccCChHHHHHHHHHHHHHHHHccCCeeeechhh
Confidence 9998632 245667777666 44555553332211 0 112344589999999999999999999853
Q ss_pred CCCCHHHHHHHHHhC-CCCc-EEecccCCCCCCCCchhhHhHHHHhcccCCCcEEEecCcccccccCCCCCCCchhHHHH
Q 019335 205 LNLHISEIEELCTEF-PSTT-VLLDHLAFCKPPSNDEESLAFSNLLKLSRFPQVYVKFSALFRVSRMPFPYQDLSSPLSQ 282 (342)
Q Consensus 205 ~~~~~~~l~~l~~~~-P~lk-~vl~H~G~~~p~~~~~~~~~~~~~~~l~~~~Nvy~~~S~~~~~~~~~~~~~~~~~~l~~ 282 (342)
-.++.++++++ |... =|+.|+..+. |..+.++.+.. +|+.++|...... .-.+
T Consensus 159 ----~~d~~eIl~~~~~~~~~~vvvHsFtGs----------~e~~~~~lk~~-~yig~~g~~~k~~----------e~~~ 213 (296)
T KOG3020|consen 159 ----HEDLLEILKRFLPECHKKVVVHSFTGS----------AEEAQKLLKLG-LYIGFTGCSLKTE----------ENLE 213 (296)
T ss_pred ----hHHHHHHHHHhccccCCceEEEeccCC----------HHHHHHHHHcc-EEecccceeeech----------hhHH
Confidence 34555555555 3333 2444887642 33344555555 9999999865432 2346
Q ss_pred HHHhcCCCcEEEccCCCCCCCCCC----------------hH-------hHHHHHHHHHhcCCCCHHHHHHHHhHHHHHh
Q 019335 283 VVSSFGANRVMWGSDFPYVVPECG----------------YK-------GGREAASLIANEVPLSPSELEWIMGGTIMQL 339 (342)
Q Consensus 283 ~i~~~G~dRilfGSD~P~~~~~~~----------------~~-------~~~~~~~~~~~~~~l~~~~~~~I~~~NA~rl 339 (342)
+++.++.+|||..||.|+..+... +. ..+...+.+.+..+++.++.....+.|+.||
T Consensus 214 vlr~iP~erlllETDsP~~~pk~~~~~~~~~~~~~~~~~~~~~~~neP~~~~~~~e~va~~k~~~~ee~~~~~~~Nt~rl 293 (296)
T KOG3020|consen 214 VLRSIPLERLLLETDSPYCGPKPSSHAGPKYVKTLFSESYPLKGRNEPCNVLQVAEVVAEAKDLDLEEVAEATYENTIRL 293 (296)
T ss_pred HHhhCCHhHeeeccCCccccCCccccccchhhhhhhhhhccccccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH
Confidence 778999999999999999877531 00 1222333333445899999999999999999
Q ss_pred cC
Q 019335 340 FQ 341 (342)
Q Consensus 340 ~~ 341 (342)
|+
T Consensus 294 ~~ 295 (296)
T KOG3020|consen 294 FK 295 (296)
T ss_pred hc
Confidence 97
No 16
>PRK05451 dihydroorotase; Provisional
Probab=99.45 E-value=2.8e-11 Score=114.75 Aligned_cols=246 Identities=14% Similarity=0.128 Sum_probs=153.0
Q ss_pred CeeeeeeeccCCCCccCCCCCCCCCCCCCCCCChHHHHHHhHHCCCceEEEeCCC-CCc----cchHHHHHHHHhCCC--
Q 019335 61 KIIDSHLHVWASPEEAADKFPYFPGQEPTLPGHVDFLLQCMEEASVDGALIVQPI-NHK----FDHSLVTSVLKKYPS-- 133 (342)
Q Consensus 61 ~iID~H~Hl~~~~~~~~~~~p~~~~~~~~~~~~~~~ll~~md~~GI~~~v~~~~~-~~~----~~N~~~~~~~~~~p~-- 133 (342)
..||.|+|+-.. .+.++++.-++ ++++++|.++.. ... ..++++.++.++++.
T Consensus 9 ~~~d~h~hl~~~-------------------~~~~~~~~~~~-~~~t~~v~mPnt~P~~~~~~~l~~~~~~a~~~~~~~~ 68 (345)
T PRK05451 9 RPDDWHLHLRDG-------------------AMLKAVVPYTA-RQFGRAIVMPNLVPPVTTVAQALAYRERILAALPAGS 68 (345)
T ss_pred CcceEEEecCCc-------------------hHHHHHHHHHH-HhcCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCC
Confidence 469999999521 23446777777 679999997521 111 124566666666664
Q ss_pred cEEEEEEcCCCCcchHHHHHHHHHhcCC-ceEEEecCCCC--CCCC-cCCcHHHHHHHHHHhhhCCeEEEEeccCCC-C-
Q 019335 134 KFVGCCLANPAEDVIGIKQLEQLILKDG-FRAVRFNPYLW--PSGQ-QMTNEVGKAMFSKAGELGVPVGFMCMKGLN-L- 207 (342)
Q Consensus 134 r~~g~~~i~p~~~~~~~~eler~~~~~g-~~Gvk~~~~~~--~~g~-~l~~~~~~~~~~~a~e~~lpv~iH~~~~~~-~- 207 (342)
+|.+++.+++.+.+ .++|++++ .+.| ++|+|+++..+ ..+. ..+++.+.+++++|.++|+||.+|+.+... .
T Consensus 69 d~~~~~~i~~~~~~-~~~El~~~-~~~Gvv~g~Kl~~~~~~~~~~~~~~dd~~l~~~~e~~~~~g~~V~vHaE~~~~~~~ 146 (345)
T PRK05451 69 NFEPLMTLYLTDNT-DPDELERA-KASGVVTAAKLYPAGATTNSDAGVTDIEKIYPVLEAMQKLGMPLLVHGEVTDPDID 146 (345)
T ss_pred cEEEEEEEEeCCCC-CHHHHHHH-HHCCCEEEEEEecccCccCCccCcCCHHHHHHHHHHHHHcCCEEEEecCCCCcccc
Confidence 57788888776543 56899998 4779 66999987532 1111 237789999999999999999999985211 0
Q ss_pred ----C---H-HHHHHHHHhCCCCcEEecccCCCCCCCCchhhHhHHHHhcccCCCcEEEecCccccccc-----C-----
Q 019335 208 ----H---I-SEIEELCTEFPSTTVLLDHLAFCKPPSNDEESLAFSNLLKLSRFPQVYVKFSALFRVSR-----M----- 269 (342)
Q Consensus 208 ----~---~-~~l~~l~~~~P~lk~vl~H~G~~~p~~~~~~~~~~~~~~~l~~~~Nvy~~~S~~~~~~~-----~----- 269 (342)
. + ..+..++++||++++++.|++.. ..++.+.+. ..||+++++.-+.... .
T Consensus 147 ~~~~e~~~~~~~l~~lA~~~pg~~lhI~Hlst~---------~~~e~i~~a--~~~it~Et~ph~L~l~~~~~~~~~~~~ 215 (345)
T PRK05451 147 IFDREAVFIDRVLEPLRRRFPKLKIVFEHITTK---------DAVDYVREA--NDNLAATITPHHLLINRNDMLVGGIRP 215 (345)
T ss_pred cccchHHHHHHHHHHHHHhcCCCcEEEEecCcH---------HHHHHHHhc--CCCEEEEecHHHHhcCHHHHhCCCcCC
Confidence 0 1 13567999999999999999862 122222222 4589999886533210 0
Q ss_pred ----CCCCCCchhHHHHHHHhc--CCCcEEEccC-CCCCCCCC-------ChHh---HHHHHHHHHhcCCCCHHHHHHHH
Q 019335 270 ----PFPYQDLSSPLSQVVSSF--GANRVMWGSD-FPYVVPEC-------GYKG---GREAASLIANEVPLSPSELEWIM 332 (342)
Q Consensus 270 ----~~~~~~~~~~l~~~i~~~--G~dRilfGSD-~P~~~~~~-------~~~~---~~~~~~~~~~~~~l~~~~~~~I~ 332 (342)
..|... ..--..+.+.+ |.=.++.||| .|+...+. +... .+..+..++.. ..+-+..-+++
T Consensus 216 ~~k~~PPLR~-~~d~~aLw~~l~~G~Id~~i~SDHaP~~~~~K~~~~G~~gi~~~~~g~~~~~~~~~~-~~~l~~~v~~~ 293 (345)
T PRK05451 216 HLYCLPILKR-ETHRQALREAATSGNPKFFLGTDSAPHARHAKESACGCAGIFSAPAALELYAEVFEE-AGALDKLEAFA 293 (345)
T ss_pred CeEEeCCCCC-HHHHHHHHHHHHcCCCCEEEeCCCCCCChHHhCCCCCCCchhhHHHHHHHHHHHHHc-CCCHHHHHHHH
Confidence 112222 23334555555 3222358999 57753221 1211 11222222322 34889999999
Q ss_pred hHHHHHhcC
Q 019335 333 GGTIMQLFQ 341 (342)
Q Consensus 333 ~~NA~rl~~ 341 (342)
+.|..++||
T Consensus 294 s~nPAkifG 302 (345)
T PRK05451 294 SLNGPDFYG 302 (345)
T ss_pred hHHHHHHhC
Confidence 999999996
No 17
>cd01292 metallo-dependent_hydrolases Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The family includes urease alpha, adenosine deaminase, phosphotriesterase dihydroorotases, allantoinases, hydantoinases, AMP-, adenine and cytosine deaminases, imidazolonepropionase, aryldialkylphosphatase, chlorohydrolases, formylmethanofuran dehydrogenases and others.
Probab=99.44 E-value=2.1e-11 Score=110.31 Aligned_cols=225 Identities=13% Similarity=0.061 Sum_probs=136.1
Q ss_pred ChHHHHHHhHHCCCceEEEeCCCCCc----cchHHHHHHHHhCCC-cEEEEEEcCCCCc-------chHHHHHHHHHhcC
Q 019335 93 HVDFLLQCMEEASVDGALIVQPINHK----FDHSLVTSVLKKYPS-KFVGCCLANPAED-------VIGIKQLEQLILKD 160 (342)
Q Consensus 93 ~~~~ll~~md~~GI~~~v~~~~~~~~----~~N~~~~~~~~~~p~-r~~g~~~i~p~~~-------~~~~~eler~~~~~ 160 (342)
+....++.|.+.||+..+.+...... ..++.+.+.+++.|+ +++....+..... +...++++++. ..
T Consensus 36 ~~~~~~~~~~~~Gvttv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~ 114 (275)
T cd01292 36 DTLRALEALLAGGVTTVVDMGSTPPPTTTKAAIEAVAEAARASAGIRVVLGLGIPGVPAAVDEDAEALLLELLRRGL-EL 114 (275)
T ss_pred HHHHHHHHHHhcCceEEEeeEeecCccccchHHHHHHHHHHHhcCeeeEEeccCCCCccccchhHHHHHHHHHHHHH-hc
Confidence 34566778999999999876532211 346788888888863 3332233332211 12234454442 25
Q ss_pred CceEEEecCCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEEeccCCC--CCHHHHHHHHHhCCCCcEEecccCCCCCCCCc
Q 019335 161 GFRAVRFNPYLWPSGQQMTNEVGKAMFSKAGELGVPVGFMCMKGLN--LHISEIEELCTEFPSTTVLLDHLAFCKPPSND 238 (342)
Q Consensus 161 g~~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH~~~~~~--~~~~~l~~l~~~~P~lk~vl~H~G~~~p~~~~ 238 (342)
|++|++++.... ....+.+.++++++.|.++|+||.+|++.+.. ..+..+.+.... +.++++.|++...+
T Consensus 115 ~~~gi~~~~~~~--~~~~~~~~~~~~~~~a~~~~~~i~~H~~~~~~~~~~~~~~~~~~~~--~~~~~~~H~~~~~~---- 186 (275)
T cd01292 115 GAVGLKLAGPYT--ATGLSDESLRRVLEEARKLGLPVVIHAGELPDPTRALEDLVALLRL--GGRVVIGHVSHLDP---- 186 (275)
T ss_pred CCeeEeeCCCCC--CCCCCcHHHHHHHHHHHHcCCeEEEeeCCcccCccCHHHHHHHHhc--CCCEEEECCccCCH----
Confidence 899999886531 22357889999999999999999999986532 123444444432 67899999997411
Q ss_pred hhhHhHHHHhcccCCCcEEEecCcccccccCCCCCCCchhHHHHHHHhcCCCcEEEccCCCCCCCCCChHhHHHHHHHHH
Q 019335 239 EESLAFSNLLKLSRFPQVYVKFSALFRVSRMPFPYQDLSSPLSQVVSSFGANRVMWGSDFPYVVPECGYKGGREAASLIA 318 (342)
Q Consensus 239 ~~~~~~~~~~~l~~~~Nvy~~~S~~~~~~~~~~~~~~~~~~l~~~i~~~G~dRilfGSD~P~~~~~~~~~~~~~~~~~~~ 318 (342)
..++ .+.+. |+++.++........ ......+.+..+++. | .++++|||+|.......+......+....
T Consensus 187 ---~~~~---~~~~~-g~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-g-~~~~lgTD~~~~~~~~~~~~~~~~~~~~~ 255 (275)
T cd01292 187 ---ELLE---LLKEA-GVSLEVCPLSNYLLG--RDGEGAEALRRLLEL-G-IRVTLGTDGPPHPLGTDLLALLRLLLKVL 255 (275)
T ss_pred ---HHHH---HHHHc-CCeEEECCccccccc--CCcCCcccHHHHHHC-C-CcEEEecCCCCCCCCCCHHHHHHHHHHHH
Confidence 1222 22222 788888765322110 000112346666655 4 89999999988632223333333332222
Q ss_pred hcCCCCHHHHHHHHhHHHHH
Q 019335 319 NEVPLSPSELEWIMGGTIMQ 338 (342)
Q Consensus 319 ~~~~l~~~~~~~I~~~NA~r 338 (342)
..+++.++..++...|+.+
T Consensus 256 -~~~~~~~~~~~~~t~n~a~ 274 (275)
T cd01292 256 -RLGLSLEEALRLATINPAR 274 (275)
T ss_pred -hcCCCHHHHHHHHhccccC
Confidence 2347999999999988875
No 18
>COG1099 Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only]
Probab=99.44 E-value=1.8e-11 Score=105.02 Aligned_cols=233 Identities=18% Similarity=0.183 Sum_probs=141.4
Q ss_pred CeeeeeeeccCCCCccCCCCCCCCCCCCCCCCChHHHHHHhHHCCCceEEEeCCCCCccch--------HHHH----HHH
Q 019335 61 KIIDSHLHVWASPEEAADKFPYFPGQEPTLPGHVDFLLQCMEEASVDGALIVQPINHKFDH--------SLVT----SVL 128 (342)
Q Consensus 61 ~iID~H~Hl~~~~~~~~~~~p~~~~~~~~~~~~~~~ll~~md~~GI~~~v~~~~~~~~~~N--------~~~~----~~~ 128 (342)
+.||+|+|+.. .+.+++ +.|...||..++-..-.++..-| +.++ .-+
T Consensus 1 ~~iD~HiH~d~--------------------r~~eDl-ekMa~sGI~~Vit~AhdP~~~~~~~v~~~h~~rl~~~E~~Ra 59 (254)
T COG1099 1 MYIDSHIHLDV--------------------RGFEDL-EKMALSGIREVITLAHDPYPMKTAEVYLDHFRRLLGVEPERA 59 (254)
T ss_pred Ccccccccccc--------------------ccHHHH-HHHHHhChhhhhhcccCCCCcccHHHHHHHHHHHHccchhhH
Confidence 45999999853 234454 78999999988765422222222 1111 112
Q ss_pred HhCCCcEEEEEEcCCCC-c---chHHHHHHHHHhcCCceEEEecCCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEEeccC
Q 019335 129 KKYPSKFVGCCLANPAE-D---VIGIKQLEQLILKDGFRAVRFNPYLWPSGQQMTNEVGKAMFSKAGELGVPVGFMCMKG 204 (342)
Q Consensus 129 ~~~p~r~~g~~~i~p~~-~---~~~~~eler~~~~~g~~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH~~~~ 204 (342)
+++.=+.....+++|.. | +..+++|+......++++|.-.... ....--.+.|..+++.|.++++|+.+|+...
T Consensus 60 ~~~Gl~~~vavGvHPr~iP~e~~~~l~~L~~~l~~e~VvAiGEiGLe--~~t~~E~evf~~QL~LA~e~dvPviVHTPr~ 137 (254)
T COG1099 60 EKAGLKLKVAVGVHPRAIPPELEEVLEELEELLSNEDVVAIGEIGLE--EATDEEKEVFREQLELARELDVPVIVHTPRR 137 (254)
T ss_pred HhhCceeeEEeccCCCCCCchHHHHHHHHHhhcccCCeeEeeecccc--cCCHHHHHHHHHHHHHHHHcCCcEEEeCCCC
Confidence 22322344455677765 3 2356677777666789899866542 1222245689999999999999999998643
Q ss_pred CC-CCHHHHHHHHHh--CCCCcEEecccCCCCCCCCchhhHhHHHHhcccCCCcEEEecCcccccccCCCCCCCchhHHH
Q 019335 205 LN-LHISEIEELCTE--FPSTTVLLDHLAFCKPPSNDEESLAFSNLLKLSRFPQVYVKFSALFRVSRMPFPYQDLSSPLS 281 (342)
Q Consensus 205 ~~-~~~~~l~~l~~~--~P~lk~vl~H~G~~~p~~~~~~~~~~~~~~~l~~~~Nvy~~~S~~~~~~~~~~~~~~~~~~l~ 281 (342)
.. .-.+.+.+++.. ++.-.+|++|+-. +.+..+.+. .+|+.++-... -... .-..
T Consensus 138 nK~e~t~~ildi~~~~~l~~~lvvIDH~N~-------------etv~~vld~-e~~vGlTvqPg-------Klt~-~eAv 195 (254)
T COG1099 138 NKKEATSKILDILIESGLKPSLVVIDHVNE-------------ETVDEVLDE-EFYVGLTVQPG-------KLTV-EEAV 195 (254)
T ss_pred cchhHHHHHHHHHHHcCCChhheehhcccH-------------HHHHHHHhc-cceEEEEecCC-------cCCH-HHHH
Confidence 21 123455666653 4445589999964 111112222 36766653221 1112 2345
Q ss_pred HHHHhcCCCcEEEccCCCCCCCCCChHhHHHHHHHHHhcCCCCHHHHHHHHhHHHHHhcC
Q 019335 282 QVVSSFGANRVMWGSDFPYVVPECGYKGGREAASLIANEVPLSPSELEWIMGGTIMQLFQ 341 (342)
Q Consensus 282 ~~i~~~G~dRilfGSD~P~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~I~~~NA~rl~~ 341 (342)
++++.+|++|||..||.-....+ .+.-..-++ .+ +..|+++++.+++.++||++||+
T Consensus 196 eIV~ey~~~r~ilnSD~~s~~sd-~lavprtal-~m-~~~gv~~~~i~kV~~~NA~~~~~ 252 (254)
T COG1099 196 EIVREYGAERIILNSDAGSAASD-PLAVPRTAL-EM-EERGVGEEEIEKVVRENALSFYG 252 (254)
T ss_pred HHHHHhCcceEEEeccccccccc-chhhhHHHH-HH-HHhcCCHHHHHHHHHHHHHHHhC
Confidence 67888899999999997665433 221111122 22 23699999999999999999997
No 19
>COG0418 PyrC Dihydroorotase [Nucleotide transport and metabolism]
Probab=99.40 E-value=4.3e-11 Score=107.14 Aligned_cols=245 Identities=16% Similarity=0.161 Sum_probs=142.9
Q ss_pred eeeeeeeccCCCCccCCCCCCCCCCCCCCCCChHHHHHHhHHCCCceEEEeCCCC---C--ccchHHHHHHHHhCC--Cc
Q 019335 62 IIDSHLHVWASPEEAADKFPYFPGQEPTLPGHVDFLLQCMEEASVDGALIVQPIN---H--KFDHSLVTSVLKKYP--SK 134 (342)
Q Consensus 62 iID~H~Hl~~~~~~~~~~~p~~~~~~~~~~~~~~~ll~~md~~GI~~~v~~~~~~---~--~~~N~~~~~~~~~~p--~r 134 (342)
-.|.|+|+=+- .-++..+..-.+ +..++|+|+.-. . ...-.|=.++.+.-| ++
T Consensus 10 PdDwHlHLRdg-------------------~mL~~V~p~ts~-~f~rAiIMPNL~pPvtt~~~a~aYr~rIl~a~p~~~~ 69 (344)
T COG0418 10 PDDWHLHLRDG-------------------AMLKAVVPYTSR-GFGRAIIMPNLVPPVTTVADALAYRERILKAVPAGHR 69 (344)
T ss_pred ccceeEEecCc-------------------cHHHHhhhhhhh-hcceEEEcCCCCCCcccHHHHHHHHHHHHHhCcCCCC
Confidence 47999999431 123444444444 889999996311 1 111233344445555 37
Q ss_pred EEEEEEcCCCCcchHHHHHHHHHhcCCceEEEecCCCCC---CCCcCCcHHHHHHHHHHhhhCCeEEEEeccCCC-CC--
Q 019335 135 FVGCCLANPAEDVIGIKQLEQLILKDGFRAVRFNPYLWP---SGQQMTNEVGKAMFSKAGELGVPVGFMCMKGLN-LH-- 208 (342)
Q Consensus 135 ~~g~~~i~p~~~~~~~~eler~~~~~g~~Gvk~~~~~~~---~g~~l~~~~~~~~~~~a~e~~lpv~iH~~~~~~-~~-- 208 (342)
|.+.-.+-..+.- ..++|++..++..++|+|++|.... ++.--+-+.+.|+++.+++.|+|+.+|.-.... .+
T Consensus 70 F~PLMtlYLtd~~-~peel~~a~~~g~i~a~KlYPaGaTTNS~~GV~~~~~~~pvle~Mq~~gmpLlvHGEvt~~~vDif 148 (344)
T COG0418 70 FTPLMTLYLTDST-TPEELEEAKAKGVIRAVKLYPAGATTNSDSGVTDIEKIYPVLEAMQKIGMPLLVHGEVTDAEVDIF 148 (344)
T ss_pred CceeEEEEecCCC-CHHHHHHHHhcCcEEEEEeccCCccccCcCCcCcHHHHHHHHHHHHHcCCeEEEecccCCccccch
Confidence 7776443333211 3478988855555999999987421 111223578999999999999999999542211 11
Q ss_pred ------HH-HHHHHHHhCCCCcEEecccCCCCCCCCchhhHhHHHHhcccC-CCcEEEecCcccccc-cC----------
Q 019335 209 ------IS-EIEELCTEFPSTTVLLDHLAFCKPPSNDEESLAFSNLLKLSR-FPQVYVKFSALFRVS-RM---------- 269 (342)
Q Consensus 209 ------~~-~l~~l~~~~P~lk~vl~H~G~~~p~~~~~~~~~~~~~~~l~~-~~Nvy~~~S~~~~~~-~~---------- 269 (342)
+. .++.+.++||+||||+.|+-.. +.+.-+.+ ..|++.-+..-.... +.
T Consensus 149 drE~~Fi~~vl~pl~~~fP~LKIV~EHiTT~------------dav~~v~~~~~nlaATIT~hHL~~nrnd~l~Ggi~Ph 216 (344)
T COG0418 149 DREAAFIESVLEPLRQRFPKLKIVLEHITTK------------DAVEYVKDANNNLAATITPHHLLLNRNDMLVGGIRPH 216 (344)
T ss_pred hhHHHHHHHHHHHHHhhCCcceEEEEEeccH------------HHHHHHHhcCcceeeEeehhheeeehhhhhcCCCCcc
Confidence 22 5788999999999999999751 11111222 223555444221110 00
Q ss_pred --CCCC---CCchhHHHHHHHhcCCCcEEEccC-CCCCCCC--------CCh--HhHHHHHHHHHhcCCCCHHHHHHHHh
Q 019335 270 --PFPY---QDLSSPLSQVVSSFGANRVMWGSD-FPYVVPE--------CGY--KGGREAASLIANEVPLSPSELEWIMG 333 (342)
Q Consensus 270 --~~~~---~~~~~~l~~~i~~~G~dRilfGSD-~P~~~~~--------~~~--~~~~~~~~~~~~~~~l~~~~~~~I~~ 333 (342)
+-|. +..+..+++++-. |-.|++|||| .||.... +-| ...+..+.++++.. =..+.++...+
T Consensus 217 ~fClPilKr~~hr~AL~~aa~s-g~~kfFlGtDSAPH~~~~Ke~~cgcAG~fsap~al~~~AevFE~~-naL~~LeaF~S 294 (344)
T COG0418 217 LFCLPILKRETHREALREAATS-GHPKFFLGTDSAPHARSRKESACGCAGIFSAPFALPLYAEVFEEE-NALDNLEAFAS 294 (344)
T ss_pred eeeeccccchhhHHHHHHHHhc-CCCcEEecCCCCCCcccccccccccccccccHhHHHHHHHHHHHh-cHHHHHHHHHh
Confidence 0011 1233455555544 7889999999 4887653 112 12333444444422 25688899999
Q ss_pred HHHHHhcC
Q 019335 334 GTIMQLFQ 341 (342)
Q Consensus 334 ~NA~rl~~ 341 (342)
.|..+||+
T Consensus 295 ~nGp~fY~ 302 (344)
T COG0418 295 DNGPKFYG 302 (344)
T ss_pred hcCcceec
Confidence 99999996
No 20
>TIGR00856 pyrC_dimer dihydroorotase, homodimeric type. This homodimeric form of dihydroorotase is less common in microbial genomes than a related dihydroorotase that appears in a complex with aspartyltranscarbamoylase or as a homologous domain in multifunctional proteins of pyrimidine biosynthesis in higher eukaryotes.
Probab=99.37 E-value=4.7e-10 Score=106.09 Aligned_cols=232 Identities=14% Similarity=0.131 Sum_probs=145.0
Q ss_pred HHHHHHhHHCCCceEEEeCCCC-C----ccchHHHHHHHHhCCC--cEEEEEEcCCCCcchHHHHHHHHHhcCCceEEEe
Q 019335 95 DFLLQCMEEASVDGALIVQPIN-H----KFDHSLVTSVLKKYPS--KFVGCCLANPAEDVIGIKQLEQLILKDGFRAVRF 167 (342)
Q Consensus 95 ~~ll~~md~~GI~~~v~~~~~~-~----~~~N~~~~~~~~~~p~--r~~g~~~i~p~~~~~~~~eler~~~~~g~~Gvk~ 167 (342)
+..+..-.+ ||+.+|.++... . ...|++..+..+.+|+ +|.+++.+++..+. .++|+++++++.|++|+|+
T Consensus 21 ~~~~~~~~~-~vt~vv~mPnt~P~~~~~e~~~~~~~~~~~~s~~~vDf~~~~~v~~~~~~-~~~Ei~~l~~~~Gv~g~Kl 98 (341)
T TIGR00856 21 KAVLPYTSE-IFSRAIVMPNLAPPVTTVEAAVAYRERILDAVPAGHDFTPLMTLYLTDSL-TPEELERAKNEGVVRAVKL 98 (341)
T ss_pred HHHHHHHHh-hcCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcceEEEEEEECCCCC-CHHHHHHHHHcCCeEEEEE
Confidence 333444444 699999975321 1 1236677777788875 78889999886554 5689999977779999999
Q ss_pred cCCCC--CCCCcC-CcHHHHHHHHHHhhhCCeEEEEeccCC-CC---------CHHHHHHHHHhCCCCcEEecccCCCCC
Q 019335 168 NPYLW--PSGQQM-TNEVGKAMFSKAGELGVPVGFMCMKGL-NL---------HISEIEELCTEFPSTTVLLDHLAFCKP 234 (342)
Q Consensus 168 ~~~~~--~~g~~l-~~~~~~~~~~~a~e~~lpv~iH~~~~~-~~---------~~~~l~~l~~~~P~lk~vl~H~G~~~p 234 (342)
++... ..+... ++..+.+++++|+++|++|.+|+.+.. .. ....+..++.++|++++++.|++..
T Consensus 99 f~~~~~~~~~~~v~dd~~l~~~~e~~~e~g~~v~vHaEd~~~~i~~~~~e~~a~~~~i~~lA~~~~~~~~~i~H~st~-- 176 (341)
T TIGR00856 99 YPAGATTNSSHGVTDIDAIMPVLEAMEKIGLPLLLHGEVTHGDIDIFDREARFIESVLEPLRQRFPALKVVLEHITTK-- 176 (341)
T ss_pred ccCCcccCCCcCCCCHHHHHHHHHHHHHcCCeEEEeecCCCCCcccccchhhhhHHHHHHHHHHccCCeEEEEecCcH--
Confidence 87532 112233 348999999999999999999998641 11 1125667788999999999999873
Q ss_pred CCCchhhHhHHHHhcccCCCcEEEecCcccccc------c----C----CCCCCCchhHHHHHHHhc--CCCcEEEccC-
Q 019335 235 PSNDEESLAFSNLLKLSRFPQVYVKFSALFRVS------R----M----PFPYQDLSSPLSQVVSSF--GANRVMWGSD- 297 (342)
Q Consensus 235 ~~~~~~~~~~~~~~~l~~~~Nvy~~~S~~~~~~------~----~----~~~~~~~~~~l~~~i~~~--G~dRilfGSD- 297 (342)
+ ..+.+.+ ++. +|+++++.-+... . . ..|... ..-...+.+.+ |.=.++.|||
T Consensus 177 ----~---~~~~i~~-a~~-~vt~E~~ph~L~l~~~~~~~~~~~~~~k~~PPlR~-~~d~~aL~~~l~~G~id~~i~SDH 246 (341)
T TIGR00856 177 ----D---AIDYVED-GNN-RLAATITPQHLMFTRNDLLGGGVNPHLYCLPILKR-NIHQQALLELAASGFPKFFLGTDS 246 (341)
T ss_pred ----H---HHHHHHH-cCC-CEEEEEcHHHHhccHHHHhccCCCCceEEeCCCCC-HHHHHHHHHHHHcCCCCEEEeCCC
Confidence 1 1111221 222 4888887543210 1 0 112222 22334444444 4344458999
Q ss_pred CCCCCCCC----------ChHhHHHHHHHHHhcCCCCHHHHHHHHhHHHHHhcC
Q 019335 298 FPYVVPEC----------GYKGGREAASLIANEVPLSPSELEWIMGGTIMQLFQ 341 (342)
Q Consensus 298 ~P~~~~~~----------~~~~~~~~~~~~~~~~~l~~~~~~~I~~~NA~rl~~ 341 (342)
.|+...+. +.+..+..+..+.+. .++-+...++++.|..++||
T Consensus 247 aP~~~~~K~~~~~~~G~~g~e~~l~~~~~~~~~-~~~l~~~v~~~s~nPAk~~g 299 (341)
T TIGR00856 247 APHARHRKESSCGCAGCFSAPTALPSYAEVFEE-MNALENLEAFCSDNGPQFYG 299 (341)
T ss_pred CCCChhHcCCCCCCCCcccHHHHHHHHHHHHhc-CCCHHHHHHHHhHhHHHHhC
Confidence 57743211 111122222223333 68999999999999999997
No 21
>cd01295 AdeC Adenine deaminase (AdeC) directly deaminates adenine to form hypoxanthine. This reaction is part of one of the adenine salvage pathways, as well as the degradation pathway. It is important for adenine utilization as a purine, as well as a nitrogen source in bacteria and archea.
Probab=99.16 E-value=7.8e-09 Score=100.82 Aligned_cols=230 Identities=15% Similarity=0.032 Sum_probs=138.7
Q ss_pred CeeeeeeeccCCCCccCCCCCCCCCCCCCCCCChHHHHHHhHHCCCceEEEeCC---CCCc-cchHHHHHHHHhCCCcEE
Q 019335 61 KIIDSHLHVWASPEEAADKFPYFPGQEPTLPGHVDFLLQCMEEASVDGALIVQP---INHK-FDHSLVTSVLKKYPSKFV 136 (342)
Q Consensus 61 ~iID~H~Hl~~~~~~~~~~~p~~~~~~~~~~~~~~~ll~~md~~GI~~~v~~~~---~~~~-~~N~~~~~~~~~~p~r~~ 136 (342)
.+||+|+|+..+ ..+++++.+.+-..||+..|..+- +..+ ...+++.+..+++|-+++
T Consensus 10 G~ID~H~Hi~~~------------------~~~~~~~~~~a~~~GvTtvv~~p~~~~~v~g~~~~~~~~~~a~~~p~~~~ 71 (422)
T cd01295 10 GFIDAHLHIESS------------------MLTPSEFAKAVLPHGTTTVIADPHEIANVAGVDGIEFMLEDAKKTPLDIF 71 (422)
T ss_pred CEEEccCCcCCC------------------CCChHHHHHHHHCCCcEEEEeCCCCCCcCCCHHHHHHHHHHHhCCCceEE
Confidence 579999999753 124466777778899999987641 1122 224677777788885554
Q ss_pred EEEEc-CCCCc-----ch-HHHHHHHHHhcCCceEEEecCCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEEeccCCCCCH
Q 019335 137 GCCLA-NPAED-----VI-GIKQLEQLILKDGFRAVRFNPYLWPSGQQMTNEVGKAMFSKAGELGVPVGFMCMKGLNLHI 209 (342)
Q Consensus 137 g~~~i-~p~~~-----~~-~~~eler~~~~~g~~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH~~~~~~~~~ 209 (342)
..+.. -|..+ .. ..++++++++..+++|++....+ + +...+++.+...++.+.++|+||.+|+... .-
T Consensus 72 ~~~p~~vp~t~~e~~g~~~~~~~i~~l~~~~~vvglgE~md~-~-~v~~~~~~l~~~i~~A~~~g~~v~~Ha~g~---~~ 146 (422)
T cd01295 72 WMLPSCVPATPFETSGAELTAEDIKELLEHPEVVGLGEVMDF-P-GVIEGDDEMLAKIQAAKKAGKPVDGHAPGL---SG 146 (422)
T ss_pred EeCCCcCCCCCCCCCCCcCCHHHHHHHhcCCCCcEEEEeccC-c-cccCCcHHHHHHHHHHHhCCCEEEEeCCCC---CH
Confidence 33211 11111 11 36788888777899999976332 2 223467889999999999999999998632 12
Q ss_pred HHHHHHHHhCCCCcEEecccCCCCCCCCchhhHhHHHHhcccCCCcEEEecCcccccccCCCCCCCchhHHHHHHHhcC-
Q 019335 210 SEIEELCTEFPSTTVLLDHLAFCKPPSNDEESLAFSNLLKLSRFPQVYVKFSALFRVSRMPFPYQDLSSPLSQVVSSFG- 288 (342)
Q Consensus 210 ~~l~~l~~~~P~lk~vl~H~G~~~p~~~~~~~~~~~~~~~l~~~~Nvy~~~S~~~~~~~~~~~~~~~~~~l~~~i~~~G- 288 (342)
..+...++.-+ ..+|.... .++.++..+. ++|+.+..-.. ...++.+++.++
T Consensus 147 ~~L~a~l~aGi----~~dH~~~~-----------~eea~e~l~~-G~~i~i~~g~~-----------~~~~~~~~~~l~~ 199 (422)
T cd01295 147 EELNAYMAAGI----STDHEAMT-----------GEEALEKLRL-GMYVMLREGSI-----------AKNLEALLPAITE 199 (422)
T ss_pred HHHHHHHHcCC----CCCcCCCc-----------HHHHHHHHHC-CCEEEEECccc-----------HhhHHHHHHhhhh
Confidence 34555554222 23576542 1122222233 57877652211 123445555554
Q ss_pred --CCcEEEccCCCCCCCCCChHhHHHHHHHHHhcCCCCHHHHHHHHhHHHHHhcC
Q 019335 289 --ANRVMWGSDFPYVVPECGYKGGREAASLIANEVPLSPSELEWIMGGTIMQLFQ 341 (342)
Q Consensus 289 --~dRilfGSD~P~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~I~~~NA~rl~~ 341 (342)
..|++++||.|.......-......++ .....+++.++.-+....|+.++|+
T Consensus 200 ~~~~~i~l~TD~~~~~~~~~~g~~~~v~r-~a~~~g~s~~eal~~aT~n~A~~~g 253 (422)
T cd01295 200 KNFRRFMFCTDDVHPDDLLSEGHLDYIVR-RAIEAGIPPEDAIQMATINPAECYG 253 (422)
T ss_pred ccCCeEEEEcCCCCchhhhhcchHHHHHH-HHHHcCCCHHHHHHHHhHHHHHHcC
Confidence 489999999985432100011112222 2223689999999999999999885
No 22
>PRK09875 putative hydrolase; Provisional
Probab=99.05 E-value=3.7e-08 Score=90.80 Aligned_cols=259 Identities=15% Similarity=0.140 Sum_probs=144.6
Q ss_pred CCCeeeeeeeccCCCCccCCCCCCCCCCCCCCCCChHHHH---HHhHHCCCceEEEeCCCCCccchHHHHHHHHhCCCcE
Q 019335 59 KVKIIDSHLHVWASPEEAADKFPYFPGQEPTLPGHVDFLL---QCMEEASVDGALIVQPINHKFDHSLVTSVLKKYPSKF 135 (342)
Q Consensus 59 ~~~iID~H~Hl~~~~~~~~~~~p~~~~~~~~~~~~~~~ll---~~md~~GI~~~v~~~~~~~~~~N~~~~~~~~~~p~r~ 135 (342)
.+-+..+|=|+... ..++...... ...+.+..+ +.+++.|+...|=..+...+-+-..+.++.++-.=.+
T Consensus 5 ~lG~tl~HEHl~~~------~~~~~~~~~~-~l~~~~~~~~el~~~~~~Gg~tiVd~T~~g~GRd~~~l~~is~~tgv~I 77 (292)
T PRK09875 5 PTGYTLAHEHLHID------LSGFKNNVDC-RLDQYAFICQEMNDLMTRGVRNVIEMTNRYMGRNAQFMLDVMRETGINV 77 (292)
T ss_pred hCCcceecCCeEec------ChhhcCCccc-ccccHHHHHHHHHHHHHhCCCeEEecCCCccCcCHHHHHHHHHHhCCcE
Confidence 34677899999742 1112111110 112334443 3466789998887766667777888888888865345
Q ss_pred EEEEE--cCCCCcc------------hHHHHHHHHHhcCCce-EE--EecCCCCCCCCcCCcHHHHHHHHHHhhhCCeEE
Q 019335 136 VGCCL--ANPAEDV------------IGIKQLEQLILKDGFR-AV--RFNPYLWPSGQQMTNEVGKAMFSKAGELGVPVG 198 (342)
Q Consensus 136 ~g~~~--i~p~~~~------------~~~~eler~~~~~g~~-Gv--k~~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~ 198 (342)
+.... .++..|+ ..+++|.+.+..-|+| || ++.... ..-.....+.++...++..+.|.||.
T Consensus 78 v~~TG~y~~~~~p~~~~~~~~e~la~~~i~ei~~Gi~gt~ikaGvIGeiG~~~-~~it~~E~kvl~Aaa~a~~~TG~pi~ 156 (292)
T PRK09875 78 VACTGYYQDAFFPEHVATRSVQELAQEMVDEIEQGIDGTELKAGIIAEIGSSE-GKITPLEEKVFIAAALAHNQTGRPIS 156 (292)
T ss_pred EEcCcCCCCccCCHHHhcCCHHHHHHHHHHHHHHhhccCCCcccEEEEEecCC-CCCCHHHHHHHHHHHHHHHHHCCcEE
Confidence 54332 2222221 1234444444322222 22 121111 00011223567777888888999999
Q ss_pred EEeccCCCCCHHHHHHHHHhCCCC---cEEecccCCCCCCCCchhhHhHHHHhcccCCCcEEEecCcccccccCCCCCCC
Q 019335 199 FMCMKGLNLHISEIEELCTEFPST---TVLLDHLAFCKPPSNDEESLAFSNLLKLSRFPQVYVKFSALFRVSRMPFPYQD 275 (342)
Q Consensus 199 iH~~~~~~~~~~~l~~l~~~~P~l---k~vl~H~G~~~p~~~~~~~~~~~~~~~l~~~~Nvy~~~S~~~~~~~~~~~~~~ 275 (342)
+|+..+. ..+ +..+++++. ++ |+|++|+... +. -..+.++++.+ +|+.+..+..... +|.+.
T Consensus 157 ~Ht~~~~-~g~-e~l~il~e~-Gvd~~rvvi~H~d~~-~d--------~~~~~~l~~~G-~~l~fD~~g~~~~--~pd~~ 221 (292)
T PRK09875 157 THTSFST-MGL-EQLALLQAH-GVDLSRVTVGHCDLK-DN--------LDNILKMIDLG-AYVQFDTIGKNSY--YPDEK 221 (292)
T ss_pred EcCCCcc-chH-HHHHHHHHc-CcCcceEEEeCCCCC-CC--------HHHHHHHHHcC-CEEEeccCCCccc--CCHHH
Confidence 9976431 223 345566665 45 8999999853 11 11234455554 8888764322111 12222
Q ss_pred chhHHHHHHHhcC-CCcEEEccCCCCCCCC-----CChHhHHHHHHHHHhcCCCCHHHHHHHHhHHHHHhcC
Q 019335 276 LSSPLSQVVSSFG-ANRVMWGSDFPYVVPE-----CGYKGGREAASLIANEVPLSPSELEWIMGGTIMQLFQ 341 (342)
Q Consensus 276 ~~~~l~~~i~~~G-~dRilfGSD~P~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~I~~~NA~rl~~ 341 (342)
....+..+++. | .||||.++|+...... ..|......+-..+...|+++++.++++.+|.+|+|.
T Consensus 222 r~~~i~~L~~~-Gy~drilLS~D~~~~~~~~~~gg~G~~~i~~~~ip~L~~~Gvse~~I~~m~~~NP~r~~~ 292 (292)
T PRK09875 222 RIAMLHALRDR-GLLNRVMLSMDITRRSHLKANGGYGYDYLLTTFIPQLRQSGFSQADVDVMLRENPSQFFQ 292 (292)
T ss_pred HHHHHHHHHhc-CCCCeEEEeCCCCCcccccccCCCChhHHHHHHHHHHHHcCCCHHHHHHHHHHCHHHHhC
Confidence 22344444443 8 9999999998544331 1344444433333345799999999999999999984
No 23
>PLN02599 dihydroorotase
Probab=98.98 E-value=2.1e-07 Score=88.60 Aligned_cols=228 Identities=13% Similarity=0.114 Sum_probs=130.3
Q ss_pred HhHHCCCceEEEeCCCCCccch-H----HHHHHHHhCC--CcEEEEEEcCCCCcchHHHHHHHHHhcCCce-EEEecCCC
Q 019335 100 CMEEASVDGALIVQPINHKFDH-S----LVTSVLKKYP--SKFVGCCLANPAEDVIGIKQLEQLILKDGFR-AVRFNPYL 171 (342)
Q Consensus 100 ~md~~GI~~~v~~~~~~~~~~N-~----~~~~~~~~~p--~r~~g~~~i~p~~~~~~~~eler~~~~~g~~-Gvk~~~~~ 171 (342)
-.-.-|++.+++++...-...+ + +..+..++-| -.|.+.+.+.+.+.. .+++|+++ .+.|++ |+|+++..
T Consensus 46 ~~~~gg~t~~i~MPn~~Ppv~~~~~~~~~~~~~~~~~~~~vdf~~~~~l~lt~~~-~l~Ei~~~-~~~Gvv~gfKlyp~~ 123 (364)
T PLN02599 46 PHSARHFGRAIVMPNLKPPVTTTARALAYRERIMKALPPGSSFEPLMTLYLTDNT-TPEEIKAA-KASGVVFAVKLYPAG 123 (364)
T ss_pred HHhcCCcCEEEECCCCCCCcCCHHHHHHHHHHHhhhcCCCcceEEEEEEecCCCC-CHHHHHHH-HHCCCcEEEEECccc
Confidence 3445699999998632112222 2 2222222323 146666666444332 46889888 688998 99998753
Q ss_pred C--CCCCcCC-cHHHHHHHHHHhhhCCeEEEEeccCCC-C-----C---H-HHHHHHHHhCCCCcEEecccCCCCCCCCc
Q 019335 172 W--PSGQQMT-NEVGKAMFSKAGELGVPVGFMCMKGLN-L-----H---I-SEIEELCTEFPSTTVLLDHLAFCKPPSND 238 (342)
Q Consensus 172 ~--~~g~~l~-~~~~~~~~~~a~e~~lpv~iH~~~~~~-~-----~---~-~~l~~l~~~~P~lk~vl~H~G~~~p~~~~ 238 (342)
. ..+..++ +..+.+++++++++|+++.+|+..... . . + ..+.+++.++|++|+++.|+...
T Consensus 124 ~tt~s~~gv~d~~~l~~~le~~~e~G~~L~vH~E~~~~~~~~~~~E~~~i~r~l~~~la~~~g~kI~i~HiSt~------ 197 (364)
T PLN02599 124 ATTNSQAGVTDLGKCLPVLEEMAEQGMPLLVHGEVTDPSVDIFDREKVFIDTILAPLVQKLPQLKIVMEHITTM------ 197 (364)
T ss_pred CcCCCccccCCHHHHHHHHHHHHhcCCEEEEecCCCcccccccccHHHHHHHHHHHHHHhccCCeEEEEecChH------
Confidence 2 1122244 489999999999999999999875211 0 1 1 12344688999999999999862
Q ss_pred hhhHhHHHHhcccCCCcEEEecCccccccc---------C-----CCCCCCchhHHHHHHHhc--CCCcEEEccC-CCCC
Q 019335 239 EESLAFSNLLKLSRFPQVYVKFSALFRVSR---------M-----PFPYQDLSSPLSQVVSSF--GANRVMWGSD-FPYV 301 (342)
Q Consensus 239 ~~~~~~~~~~~l~~~~Nvy~~~S~~~~~~~---------~-----~~~~~~~~~~l~~~i~~~--G~dRilfGSD-~P~~ 301 (342)
+ ..+.+.+..+. ||+.+++.-+.... . ..|.. -..--..+++.+ |.-..++||| .|+.
T Consensus 198 ~---~ve~v~~ak~~-~vtae~tpHhL~l~~~~~~~~~~~~~~k~~PPlR-~~~dr~aL~~al~~G~i~~~i~SDHaPh~ 272 (364)
T PLN02599 198 D---AVEFVESCGDG-NVAATVTPQHLLLNRNALFQGGLQPHNYCLPVLK-REIHREALVKAATSGSKKFFLGTDSAPHP 272 (364)
T ss_pred H---HHHHHHhccCC-CEEEEecHHHHhcCHHHHhccCCCCCeEEECCCC-CHHHHHHHHHHHHcCCCCEEEecCCCCCC
Confidence 1 12222222212 78888875432110 0 01222 122234444444 3334589999 5775
Q ss_pred CCCC-------ChHh---HHHHHHHHHhcCCCCHHHHHHHHhHHHHHhcC
Q 019335 302 VPEC-------GYKG---GREAASLIANEVPLSPSELEWIMGGTIMQLFQ 341 (342)
Q Consensus 302 ~~~~-------~~~~---~~~~~~~~~~~~~l~~~~~~~I~~~NA~rl~~ 341 (342)
..+. +... .+..+...+...+ +-+...++++.|..++||
T Consensus 273 ~~~K~~~~g~~Gi~~~~~~l~~l~~~~~~~g-~l~~l~~~~S~npA~~~g 321 (364)
T PLN02599 273 KRAKEASCGCAGIYSAPVALSLYAKAFEEAG-ALDKLEAFTSFNGPDFYG 321 (364)
T ss_pred hHHhcCCCCCCCcccHHHHHHHHHHHHHhcC-CHHHHHHHHhHHHHHHhC
Confidence 4321 1111 1222322222234 779999999999999997
No 24
>KOG2902 consensus Dihydroorotase [Nucleotide transport and metabolism]
Probab=98.91 E-value=1.3e-07 Score=82.38 Aligned_cols=130 Identities=14% Similarity=0.161 Sum_probs=83.4
Q ss_pred HHhHHCCCceEEEeCCCC-CccchHHHHHH---HHhCCC--cEEEEEEcCCCCcchHHHHHHHHHhcCCceEEEecCCCC
Q 019335 99 QCMEEASVDGALIVQPIN-HKFDHSLVTSV---LKKYPS--KFVGCCLANPAEDVIGIKQLEQLILKDGFRAVRFNPYLW 172 (342)
Q Consensus 99 ~~md~~GI~~~v~~~~~~-~~~~N~~~~~~---~~~~p~--r~~g~~~i~p~~~~~~~~eler~~~~~g~~Gvk~~~~~~ 172 (342)
-...+.||..+.+++.-. --...+..+.+ ..+-|. -|.-...+.+.. .-++|++.++..+++|||.+|...
T Consensus 28 P~~a~ggvs~AyvMPNL~PPiTt~da~i~YkK~i~kL~skttfLMslYLs~~t---tPe~I~eAa~~~~irgVK~YPaGa 104 (344)
T KOG2902|consen 28 PHSASGGVSRAYVMPNLKPPITTTDAAIIYKKFIMKLPSKTTFLMSLYLSDKT---TPEEIREAAESGVIRGVKLYPAGA 104 (344)
T ss_pred cccccCceeEEEEcCCCCCCcchHHHHHHHHHHHHhcCccceeEEEEeecCCC---CHHHHHHHHHhCceeeEEeccCcc
Confidence 344567999999986311 11112223222 223343 232223344433 236788887788999999998642
Q ss_pred ----CCCCcCCcHHHHHHHHHHhhhCCeEEEEeccCCC----------CCHHHHHHHHHhCCCCcEEecccCC
Q 019335 173 ----PSGQQMTNEVGKAMFSKAGELGVPVGFMCMKGLN----------LHISEIEELCTEFPSTTVLLDHLAF 231 (342)
Q Consensus 173 ----~~g~~l~~~~~~~~~~~a~e~~lpv~iH~~~~~~----------~~~~~l~~l~~~~P~lk~vl~H~G~ 231 (342)
.+|..-+-..+.|+|++++|.|+|+.+|.-..+. .-++.+.++..|||+||||+.||-.
T Consensus 105 TTNS~~GV~~~f~~fyPvf~aMqe~nm~LnvHGEvpps~D~~Vf~aE~~Flptll~LhqrfP~LKivlEHcTt 177 (344)
T KOG2902|consen 105 TTNSQDGVTDLFGKFYPVFEAMQEQNMPLNVHGEVPPSIDGHVFDAEKIFLPTLLQLHQRFPQLKIVLEHCTT 177 (344)
T ss_pred cccccccccccchhhhHHHHHHHHcCceEEecCCCCCccCCceecchhhhHHHHHHHHHhCccceeHHHhccc
Confidence 1233333468999999999999999999543211 1245678899999999999999976
No 25
>cd01307 Met_dep_hydrolase_B Metallo-dependent hydrolases, subgroup B is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=98.70 E-value=5.7e-06 Score=78.35 Aligned_cols=173 Identities=11% Similarity=-0.046 Sum_probs=96.5
Q ss_pred HHHHHHHHh--cCCceEEEecCCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEEeccCCCCCHHHHHHHHHhCCCCcEEec
Q 019335 150 IKQLEQLIL--KDGFRAVRFNPYLWPSGQQMTNEVGKAMFSKAGELGVPVGFMCMKGLNLHISEIEELCTEFPSTTVLLD 227 (342)
Q Consensus 150 ~~eler~~~--~~g~~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH~~~~~~~~~~~l~~l~~~~P~lk~vl~ 227 (342)
.+++++..+ ..|+.|+|....... .....-..++...+.+.++|+|+.+|+..+. ..+.++..+++ ++ .++.
T Consensus 117 ~~~l~~~~~e~~~gi~gik~~~~~~~-~~~~~~~~l~~~~~~a~~~~~pi~vH~~~~~-~~~~~~~~~l~--~g--~~~~ 190 (338)
T cd01307 117 EDAVVAAAREYPDVIVGLKARASKSV-VGEWGIKPLELAKKIAKEADLPLMVHIGSPP-PILDEVVPLLR--RG--DVLT 190 (338)
T ss_pred HHHHHHHHHHCcCcEEEEEEEeeccc-ccccCCcHHHHHHHHHHHcCCCEEEEeCCCC-CCHHHHHHHhc--CC--CEEE
Confidence 345555443 459999987532110 1111112278899999999999999998652 34556666553 22 3778
Q ss_pred ccCCCCCCCCchhh-HhHHHHhcccCCCcEEEecC-cccccccCCCCCCCchhHHHHHHHhcCC-CcEEEccCCCCCCCC
Q 019335 228 HLAFCKPPSNDEES-LAFSNLLKLSRFPQVYVKFS-ALFRVSRMPFPYQDLSSPLSQVVSSFGA-NRVMWGSDFPYVVPE 304 (342)
Q Consensus 228 H~G~~~p~~~~~~~-~~~~~~~~l~~~~Nvy~~~S-~~~~~~~~~~~~~~~~~~l~~~i~~~G~-dRilfGSD~P~~~~~ 304 (342)
|+..+......+.. .....+.++.+. ++|+|++ +..... .+....+++. |. .. ..|||.|.....
T Consensus 191 H~~~g~~~~~~~~~~~~~~~~~~~~~~-G~~~d~~~G~~~~~---------~~~~~~l~~~-G~~~~-~lstD~~~~~~~ 258 (338)
T cd01307 191 HCFNGKPNGIVDEEGEVLPLVRRARER-GVIFDVGHGTASFS---------FRVARAAIAA-GLLPD-TISSDIHGRNRT 258 (338)
T ss_pred eccCCCCCCCCCCCCcHHHHHHHHHhC-CEEEEeCCCCCchh---------HHHHHHHHHC-CCCCe-eecCCccccCCC
Confidence 99886432111100 001112233333 6999977 321110 1234455544 54 34 479998753211
Q ss_pred CChHh-HHHHHHHHHhcCCCCHHHHHHHHhHHHHHhcC
Q 019335 305 CGYKG-GREAASLIANEVPLSPSELEWIMGGTIMQLFQ 341 (342)
Q Consensus 305 ~~~~~-~~~~~~~~~~~~~l~~~~~~~I~~~NA~rl~~ 341 (342)
..+.. ....+..+ ...+++.++..++...|++++|+
T Consensus 259 ~~p~~~l~~~l~~l-~~~gi~~ee~~~~~T~NpA~~lg 295 (338)
T cd01307 259 NGPVYALATTLSKL-LALGMPLEEVIEAVTANPARMLG 295 (338)
T ss_pred CCccccHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHcC
Confidence 11111 22334333 24699999999999999999986
No 26
>cd01302 Cyclic_amidohydrolases Cyclic amidohydrolases, including hydantoinase, dihydropyrimidinase, allantoinase, and dihydroorotase, are involved in the metabolism of pyrimidines and purines, sharing the property of hydrolyzing the cyclic amide bond of each substrate to the corresponding N-carbamyl amino acids. Allantoinases catalyze the degradation of purines, while dihydropyrimidinases and hydantoinases, a microbial counterpart of dihydropyrimidinase, are involved in pyrimidine degradation. Dihydroorotase participates in the de novo synthesis of pyrimidines.
Probab=98.69 E-value=9.5e-06 Score=76.83 Aligned_cols=244 Identities=14% Similarity=0.088 Sum_probs=133.6
Q ss_pred CeeeeeeeccCCCCccCCCCCCCCCCCCCCCCChHHHHHHhHHCCCceEEEeCCCCCccch-HHHHHHHHhCCCc-EE--
Q 019335 61 KIIDSHLHVWASPEEAADKFPYFPGQEPTLPGHVDFLLQCMEEASVDGALIVQPINHKFDH-SLVTSVLKKYPSK-FV-- 136 (342)
Q Consensus 61 ~iID~H~Hl~~~~~~~~~~~p~~~~~~~~~~~~~~~ll~~md~~GI~~~v~~~~~~~~~~N-~~~~~~~~~~p~r-~~-- 136 (342)
-.||.|+|+-.+. +. ....+.+.--+..-.-||+..+.++...-..++ +.+....+..-++ .+
T Consensus 6 G~iD~HvH~r~pg------~~-------~~~e~~~t~t~aA~~GG~Ttv~~mpn~~p~~~~~~~~~~~~~~a~~~~~~d~ 72 (337)
T cd01302 6 GFIDIHVHLRDPG------GT-------TYKEDFESGSRAAAAGGVTTVIDMPNTGPPPIDLPAIELKIKLAEESSYVDF 72 (337)
T ss_pred CeeEeeeccCCCC------CC-------CchhHHHHHHHHHHhCCCcEEEECCCCCCCCCcHHHHHHHHHHhCcCcEeeE
Confidence 4699999996431 00 001233333344456799999988632112223 2222222221111 22
Q ss_pred E-EEEcCCCCcchHHHHHHHHHhcCCceEEEecCCCCCCCC--cCCcHHHHHHHHHHhhhCCeEEEEeccCCCCCHHHHH
Q 019335 137 G-CCLANPAEDVIGIKQLEQLILKDGFRAVRFNPYLWPSGQ--QMTNEVGKAMFSKAGELGVPVGFMCMKGLNLHISEIE 213 (342)
Q Consensus 137 g-~~~i~p~~~~~~~~eler~~~~~g~~Gvk~~~~~~~~g~--~l~~~~~~~~~~~a~e~~lpv~iH~~~~~~~~~~~l~ 213 (342)
+ .+.+.+. ..+++++++. +.|+.|+|+++.+. .+. .+++..+.+.++.+.++|+||.+|+. ...
T Consensus 73 ~~~~~~~~~---~~~~el~~l~-~~Gv~g~K~f~~~~-~~~~~~~~~~~l~~~~~~~~~~g~~v~~H~E--------r~~ 139 (337)
T cd01302 73 SFHAGIGPG---DVTDELKKLF-DAGINSLKVFMNYY-FGELFDVDDGTLMRTFLEIASRGGPVMVHAE--------RAA 139 (337)
T ss_pred EEEEeccCc---cCHHHHHHHH-HcCCcEEEEEEecc-CCCccccCHHHHHHHHHHHHhcCCeEEEeHH--------HHH
Confidence 2 2233332 1457788874 67999999876431 222 57888999999999999999999975 566
Q ss_pred HHHHhCCCCcEEecccCCCCCCCCchhhHhHHHHhccc-CCCcEEEecCccccccc-------C-----CCCCCCchhHH
Q 019335 214 ELCTEFPSTTVLLDHLAFCKPPSNDEESLAFSNLLKLS-RFPQVYVKFSALFRVSR-------M-----PFPYQDLSSPL 280 (342)
Q Consensus 214 ~l~~~~P~lk~vl~H~G~~~p~~~~~~~~~~~~~~~l~-~~~Nvy~~~S~~~~~~~-------~-----~~~~~~~~~~l 280 (342)
.++++ .++++.+.|+... ..++.+.+.. +.-+|+++++.-+.... . ..|... ..-.
T Consensus 140 ~la~~-~g~~l~i~Hiss~---------~~le~i~~ak~~g~~vt~ev~ph~L~l~~~~~~~~~~~~k~~Pplr~-~~~~ 208 (337)
T cd01302 140 QLAEE-AGANVHIAHVSSG---------EALELIKFAKNKGVKVTCEVCPHHLFLDESMLRLNGAWGKVNPPLRS-KEDR 208 (337)
T ss_pred HHHHH-hCCcEEEEeCCCH---------HHHHHHHHHHHCCCcEEEEcChhhheeCHHHhhCCCceEEEeCCCCC-HHHH
Confidence 67776 6899999999862 1223232222 23367777765432110 0 112211 1222
Q ss_pred HHHHHhcCC-CcEEEccCC-CCCCCCC--------------ChHhHHHHHHHHHhcCCCCHHHHHHHHhHHHHHhcC
Q 019335 281 SQVVSSFGA-NRVMWGSDF-PYVVPEC--------------GYKGGREAASLIANEVPLSPSELEWIMGGTIMQLFQ 341 (342)
Q Consensus 281 ~~~i~~~G~-dRilfGSD~-P~~~~~~--------------~~~~~~~~~~~~~~~~~l~~~~~~~I~~~NA~rl~~ 341 (342)
+.+++.+-. .--+.|||. |+..... +.+..+..+.......+++.++.-+++..|..++|+
T Consensus 209 ~~L~~~l~~G~id~i~sDh~p~~~~~k~~~~~~~~a~~G~~g~e~~l~~~~~~~~~~~i~~~~~~~~~s~~pA~~~g 285 (337)
T cd01302 209 EALWEGVKNGKIDTIASDHAPHSKEEKESGKDIWKAPPGFPGLETRLPILLTEGVKRGLSLETLVEILSENPARIFG 285 (337)
T ss_pred HHHHHHHhCCCCCEEecCCCCCCHHHhccCCCcccCCCCcccHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC
Confidence 333333311 122889994 5532110 111111111111123578999999999999999986
No 27
>TIGR03583 EF_0837 probable amidohydrolase EF_0837/AHA_3915. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. These proteins resemble aminohydrolases (see pfam01979), including dihydroorotases. The function is unknown.
Probab=98.63 E-value=5.8e-06 Score=79.13 Aligned_cols=243 Identities=11% Similarity=0.001 Sum_probs=125.9
Q ss_pred CCeeeeeeeccCCCCccCCCCCCCCCCCCCCCCChHHHHHHhHHCCCceEEEeCCCCCccchHHHHHHHHhCCCcEEEEE
Q 019335 60 VKIIDSHLHVWASPEEAADKFPYFPGQEPTLPGHVDFLLQCMEEASVDGALIVQPINHKFDHSLVTSVLKKYPSKFVGCC 139 (342)
Q Consensus 60 ~~iID~H~Hl~~~~~~~~~~~p~~~~~~~~~~~~~~~ll~~md~~GI~~~v~~~~~~~~~~N~~~~~~~~~~p~r~~g~~ 139 (342)
..+||+|+|++.+.. . + ..+.+ +.....||+..+.+... .....+.+.+..++++.++.++.
T Consensus 50 PG~ID~H~H~~~~~~----~--~--------~~~~~---~~a~~~GvTt~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~ 111 (365)
T TIGR03583 50 AGWIDDHTHCFPKSA----L--Y--------YDEPD---EIGVKTGVTTVVDAGST-GADDIDDFYRLAQQAKTNVFALL 111 (365)
T ss_pred cCEEEeeeccCCCcc----c--c--------cCCHh---HhhhcCceeEEEeCCCC-CCCCHHHHHHHHHhhCCcEEEEe
Confidence 368999999974210 0 0 11222 22356799887765421 12334567777778886776653
Q ss_pred -----EcCC-CC----cchHHHHHHHHHh-cC-CceEEEecCCCCCCCC-cCCcHHHHHHHHHHhhhCCeEEEEeccCCC
Q 019335 140 -----LANP-AE----DVIGIKQLEQLIL-KD-GFRAVRFNPYLWPSGQ-QMTNEVGKAMFSKAGELGVPVGFMCMKGLN 206 (342)
Q Consensus 140 -----~i~p-~~----~~~~~~eler~~~-~~-g~~Gvk~~~~~~~~g~-~l~~~~~~~~~~~a~e~~lpv~iH~~~~~~ 206 (342)
.++| .. .+...+++++++. .. +++|++.......-+. .+++..+...+..+ ++++||.+|++...
T Consensus 112 ~~~~~G~~~~~~~~~~~~~~~~~l~~~~~~~~~~vv~~~~~~t~~~i~E~gl~~~~~~~~l~~~-~~~~pv~vH~~~a~- 189 (365)
T TIGR03583 112 NISRIGLVAQDELADLSNLDASAVKQAVERYPDFIVGLKARMSKSVVGDNGIEPLEIAKQIQQE-NLELPLMVHIGSAP- 189 (365)
T ss_pred eehhccccChhhhhChHHhHHHHHHHHHHhCcCcEEEEEEeecccccccCCcCHHHHHHHHHHh-cCCCcEEEEeCCCc-
Confidence 3332 21 1223456666554 33 3778664422100022 24455565655554 68999999998541
Q ss_pred CCHHHHHHHHHhCCCCcEEecccCCCCCCCCchhh-HhHHHHhcccCCCcEEEecC-cccccccCCCCCCCchhHHHHHH
Q 019335 207 LHISEIEELCTEFPSTTVLLDHLAFCKPPSNDEES-LAFSNLLKLSRFPQVYVKFS-ALFRVSRMPFPYQDLSSPLSQVV 284 (342)
Q Consensus 207 ~~~~~l~~l~~~~P~lk~vl~H~G~~~p~~~~~~~-~~~~~~~~l~~~~Nvy~~~S-~~~~~~~~~~~~~~~~~~l~~~i 284 (342)
. ...++++.+..=. ++.|+..+.+...-+.. ..-+.+...... .+|+|++ +...+. .+....+.
T Consensus 190 ~---~~~~i~~~~~~g~-~~~H~fng~~~~~~r~~g~~~~~~~~~l~~-G~i~d~~hg~~~~~---------~~~~~~~~ 255 (365)
T TIGR03583 190 P---ELDEILALMEKGD-VLTHCFNGKPNGILRETGEVKPSVLEAYNR-GVILDVGHGTASFS---------FHVAEKAK 255 (365)
T ss_pred c---CHHHHHHHhcCCC-eeeeeecCCCCCCCCCcchHHHHHHHHHhC-eEEEEeCCCCCCch---------HHHHHHHH
Confidence 2 2344444332112 57899887653221100 000111121122 5999976 543211 11222222
Q ss_pred HhcCCCcEEEccCCCCCCCC----CChHhHHHHHHHHHhcCCCCHHHHHHHHhHHHHHhcC
Q 019335 285 SSFGANRVMWGSDFPYVVPE----CGYKGGREAASLIANEVPLSPSELEWIMGGTIMQLFQ 341 (342)
Q Consensus 285 ~~~G~dRilfGSD~P~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~I~~~NA~rl~~ 341 (342)
. ++++.-||.|..... ++.......++.+. ..+++.++.-+....|++++|+
T Consensus 256 ~----~~~~~~td~~d~~~~~~~~gp~~~l~~~~~~~~-~~g~~~~ea~~~~t~npa~~~g 311 (365)
T TIGR03583 256 R----AGIFPDTISTDIYIRNRINGPVYSLATVMSKFL-ALGYSLEEVIEKVTKNAAEILK 311 (365)
T ss_pred h----CCCCCcccccccccCCCccCccccHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHhC
Confidence 1 355445555443221 11111334444444 3689999999999999999996
No 28
>COG1831 Predicted metal-dependent hydrolase (urease superfamily) [General function prediction only]
Probab=98.59 E-value=9.1e-06 Score=72.20 Aligned_cols=236 Identities=15% Similarity=0.090 Sum_probs=141.9
Q ss_pred CCCCeeeeeeeccCCCCccCCCCCCCCCCCCCCCCChHHHHHHhHHCCCceEEEeCC-CC-Ccc------c----hHHHH
Q 019335 58 SKVKIIDSHLHVWASPEEAADKFPYFPGQEPTLPGHVDFLLQCMEEASVDGALIVQP-IN-HKF------D----HSLVT 125 (342)
Q Consensus 58 ~~~~iID~H~Hl~~~~~~~~~~~p~~~~~~~~~~~~~~~ll~~md~~GI~~~v~~~~-~~-~~~------~----N~~~~ 125 (342)
..+.|.|.|.|+... .+..-+..+...++|=.+.+++.- +. ++. + -+..+
T Consensus 3 ~~~~v~DnH~H~np~------------------~gg~~ea~~~F~rAGGt~~il~nlps~~~g~~~~~~edy~r~yd~~l 64 (285)
T COG1831 3 YDIPVTDNHFHLNPK------------------NGGALEAARRFHRAGGTHLILVNLPSWSYGIAPTGGEDYRRLYDIHL 64 (285)
T ss_pred cccceecceeeecCC------------------cCcHHHHHHHHHHcCCcEEEEeecccccccCCCCcHHHHHHHHHHHH
Confidence 567899999999631 123456777888888888877642 21 111 1 23333
Q ss_pred HHHH----hCCCcEEEEEEcCCCC----------cch-------HHHHHHHHHhcCCceEEEecCCC-CCCCC---cCCc
Q 019335 126 SVLK----KYPSKFVGCCLANPAE----------DVI-------GIKQLEQLILKDGFRAVRFNPYL-WPSGQ---QMTN 180 (342)
Q Consensus 126 ~~~~----~~p~r~~g~~~i~p~~----------~~~-------~~~eler~~~~~g~~Gvk~~~~~-~~~g~---~l~~ 180 (342)
+.++ ..+-+..++..++|.+ +++ +++..++++.+.-.+||.-.... ++... ...+
T Consensus 65 r~ve~~r~e~~~~~~~vvGvHPaE~~~l~e~~~~peea~e~m~~~lelA~k~v~eg~avaiGEvGrPHypVs~~v~~~~n 144 (285)
T COG1831 65 RLVEKIREEGPVEAYAVVGVHPAEVSRLAEAGRSPEEALEEMRHALELAAKLVEEGKAVAIGEVGRPHYPVSEEVWEASN 144 (285)
T ss_pred HHHHHHHHhcCceeEEEeccCHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHhccceeeeeccCCCCCCCCHHHHHHHH
Confidence 3333 3444456677778743 122 34445556666667777433211 12222 2456
Q ss_pred HHHHHHHHHHhhhCCeEEEEeccCCCCCHHHHHHHHHhCC--CCcEEecccCCCCCCCCchhhHhHHHHhcccCCCcEEE
Q 019335 181 EVGKAMFSKAGELGVPVGFMCMKGLNLHISEIEELCTEFP--STTVLLDHLAFCKPPSNDEESLAFSNLLKLSRFPQVYV 258 (342)
Q Consensus 181 ~~~~~~~~~a~e~~lpv~iH~~~~~~~~~~~l~~l~~~~P--~lk~vl~H~G~~~p~~~~~~~~~~~~~~~l~~~~Nvy~ 258 (342)
+.+.-.+++|.+.|.||++|+-.....+...+.+++++.- .-++|-.|++. . .+.+.|+=+
T Consensus 145 ~vl~~a~elA~dvdc~vqLHtes~~~~~~~~i~~~ak~~G~~~~~VVkHha~p---~--------------v~~~~~~Gi 207 (285)
T COG1831 145 EVLEYAMELAKDVDCAVQLHTESLDEETYEEIAEMAKEAGIKPYRVVKHHAPP---L--------------VLKCEEVGI 207 (285)
T ss_pred HHHHHHHHHhhcCCCcEEEecCCCChHHHHHHHHHHHHhCCCcceeEeecCCc---c--------------chhhhhcCc
Confidence 6788889999999999999997654556788999999875 46767655543 1 112222111
Q ss_pred ecCcccccccCCCCCCCchhHHHHHHHhcCCCcEEEccCCCCCCCC----CChHhHHHHHHHHHhcCCCCHHHHHHHHhH
Q 019335 259 KFSALFRVSRMPFPYQDLSSPLSQVVSSFGANRVMWGSDFPYVVPE----CGYKGGREAASLIANEVPLSPSELEWIMGG 334 (342)
Q Consensus 259 ~~S~~~~~~~~~~~~~~~~~~l~~~i~~~G~dRilfGSD~P~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~I~~~ 334 (342)
-.|-.. ....++..++. ..|+|..|||=.-... .+....-...+++++...++++...+|+-+
T Consensus 208 ~pSV~a-----------sr~~v~~a~~~--g~~FmmETDyIDDp~RpgavL~PktVPrr~~~i~~~g~~~ee~vy~i~~E 274 (285)
T COG1831 208 FPSVPA-----------SRKNVEDAAEL--GPRFMMETDYIDDPRRPGAVLGPKTVPRRTREILEKGDLTEEDVYRIHVE 274 (285)
T ss_pred CCcccc-----------cHHHHHHHHhc--CCceEeecccccCcccCCCcCCccchhHHHHHHHHhcCCcHHHHHHHHHh
Confidence 111110 12356777766 6899999999443211 111222223445555677899999999999
Q ss_pred HHHHhcC
Q 019335 335 TIMQLFQ 341 (342)
Q Consensus 335 NA~rl~~ 341 (342)
|..++|+
T Consensus 275 ~pe~VYg 281 (285)
T COG1831 275 NPERVYG 281 (285)
T ss_pred CHHHHhC
Confidence 9999996
No 29
>PF01244 Peptidase_M19: Membrane dipeptidase (Peptidase family M19); InterPro: IPR008257 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of peptidases belong to the MEROPS peptidase family M19 (membrane dipeptidase family, clan MJ). The protein fold of the peptidase domain for members of this family resembles that of Klebsiella urease, the type example for clan MJ. Renal dipeptidase (rDP) (3.4.13.19 from EC), also known as microsomal dipeptidase, is a zinc-dependent metalloenzyme that hydrolyzes a wide range of dipeptides. It is involved in renal metabolism of glutathione and its conjugates. It is a homodimeric disulphide-linked glycoprotein attached to the renal brush border microvilli membrane by a GPI-anchor. A glutamate residue has recently been shown [,] to be important for the catalytic activity of rDP. rDP seems to be evolutionary related to hypothetical proteins in the PQQ biosynthesis operons of Acinetobacter calcoaceticus and Klebsiella pneumoniae.; GO: 0008235 metalloexopeptidase activity, 0008239 dipeptidyl-peptidase activity, 0016805 dipeptidase activity, 0006508 proteolysis; PDB: 3NEH_B 2RAG_D 3LU2_A 3B40_A 3LY0_A 3FDG_B 2I5G_B 3S2J_A 3S2N_A 3S2L_A ....
Probab=98.57 E-value=1.4e-06 Score=81.76 Aligned_cols=267 Identities=14% Similarity=0.105 Sum_probs=136.4
Q ss_pred CCCCeeeeeeeccCCCCccCCCCCCCCCCCCCCCCChHHHHHHhHHCCCceEEEe---CCCC-Cc-------cchHHHHH
Q 019335 58 SKVKIIDSHLHVWASPEEAADKFPYFPGQEPTLPGHVDFLLQCMEEASVDGALIV---QPIN-HK-------FDHSLVTS 126 (342)
Q Consensus 58 ~~~~iID~H~Hl~~~~~~~~~~~p~~~~~~~~~~~~~~~ll~~md~~GI~~~v~~---~~~~-~~-------~~N~~~~~ 126 (342)
..+++||.|+.+...-. ........ .........+..|.+.||...+.. +... .. ..-+.+.+
T Consensus 4 ~~~~viD~H~D~~~~~~---~~~~~~~~---~~~~~~~~~l~~l~~ggv~~~~~ai~~~~~~~~~~~~~~~~~~i~~~~~ 77 (320)
T PF01244_consen 4 KKMPVIDGHCDTPYDLR---DRGRDGDI---LRDNRGHVDLPRLREGGVRAQFFAIFVPPDFEGDEAFERALEQIDLFRR 77 (320)
T ss_dssp CCS-EEEEEE-HHHHHH---HHTTTTTT---TTCTTSSSCHHHHHHHTEEEEEEEEE--TTSHHHHHHHHHHHHHHHHHH
T ss_pred cCCcEEEhhhhHHHHHH---Hhcccccc---cCCCcccccHHHHHhcCCCEEEEEEEeccccccchHHHHHHHHHHHHHH
Confidence 35789999999863100 00000000 001233455678888899877642 1110 00 01233445
Q ss_pred HHHhCCCcEEE------------------EEEcCCCC-cchHHHHHHHHHhcCCceEEEecCCC---CCCCCcC------
Q 019335 127 VLKKYPSKFVG------------------CCLANPAE-DVIGIKQLEQLILKDGFRAVRFNPYL---WPSGQQM------ 178 (342)
Q Consensus 127 ~~~~~p~r~~g------------------~~~i~p~~-~~~~~~eler~~~~~g~~Gvk~~~~~---~~~g~~l------ 178 (342)
.++++|+++.- +..+.=.. -+..++.|+.+ .+.|+|-+.+.-+. +.+|..-
T Consensus 78 ~~~~~~~~~~~v~~~~di~~~~~~gk~avil~iEg~~~l~~~l~~l~~~-y~lGvR~~~Lt~n~~N~~a~g~~~~~~~~~ 156 (320)
T PF01244_consen 78 LIEAHPDRLRIVRSAADIERAKKEGKIAVILGIEGAHALGGDLERLDEF-YDLGVRYIGLTWNYRNELADGCGEPGNRDG 156 (320)
T ss_dssp HHHHCTTTEEE-SSHHHHHHHHHTT-EEEEEEEESCGGGTTTHHHHHHH-HHTTEEEEES-SSSBBSSBBBTTSTTTTSS
T ss_pred HHHhCCcceeecCCHHHHHHHHhcCCEEEEEEeeccccccCCHHHHHHH-HHcCCEEEEEeecCCCccccccccccccCC
Confidence 55667764432 22221111 12245777777 57899888765321 1111111
Q ss_pred -CcHHHHHHHHHHhhhCCeEEE-EeccCCCCCHHHHHHHHHhCCCCcEEecccCCCCCCCCchhhHhHHHHhcccCCCcE
Q 019335 179 -TNEVGKAMFSKAGELGVPVGF-MCMKGLNLHISEIEELCTEFPSTTVLLDHLAFCKPPSNDEESLAFSNLLKLSRFPQV 256 (342)
Q Consensus 179 -~~~~~~~~~~~a~e~~lpv~i-H~~~~~~~~~~~l~~l~~~~P~lk~vl~H~G~~~p~~~~~~~~~~~~~~~l~~~~Nv 256 (342)
-.+.-+.+.+.++++|+.|.+ |++ -..+.++++- .+..||..|.+.-.-.-..++... +.+..+++.+.
T Consensus 157 GLT~~G~~vV~~mn~lGm~vDvSH~s------~~t~~Dv~~~-s~~PviaSHSn~ral~~h~RNltD-e~iraia~~GG- 227 (320)
T PF01244_consen 157 GLTPFGREVVREMNRLGMLVDVSHLS------EKTFWDVLEI-SKKPVIASHSNARALCPHPRNLTD-EQIRAIAERGG- 227 (320)
T ss_dssp SB-HHHHHHHHHHHHHT-EEE-TTB-------HHHHHHHHHH--SSEEEECCEEBTTTS--TTSB-H-HHHHHHHHTT--
T ss_pred CcChHHHHHHHHHHHcCCeeeeccCC------HHHHHHHHhh-cCCCEEEeccChHhhCCCCCCCCH-HHHHHHHHCCc-
Confidence 125678999999999999854 222 2345666654 356799999986321111111111 12334554432
Q ss_pred EEecCccccccc----CCCCCCCchhHHHHHHHhcCCCcEEEccCCCCCCC--C--CChHhHHHHHHHHHhcCCCCHHHH
Q 019335 257 YVKFSALFRVSR----MPFPYQDLSSPLSQVVSSFGANRVMWGSDFPYVVP--E--CGYKGGREAASLIANEVPLSPSEL 328 (342)
Q Consensus 257 y~~~S~~~~~~~----~~~~~~~~~~~l~~~i~~~G~dRilfGSD~P~~~~--~--~~~~~~~~~~~~~~~~~~l~~~~~ 328 (342)
.+.+.....+-. .....+++...+.++++..|.|+|=+||||-.... . .+........+.+. ..++++++.
T Consensus 228 viGi~~~~~fl~~~~~~~~~~~~~~~Hi~y~~~l~G~dhVgiGsDfdg~~~~~~gl~~~~~~~~l~~~L~-~rG~s~~~i 306 (320)
T PF01244_consen 228 VIGINFYPAFLGDDWDPRASLDDLVDHIDYIVDLVGIDHVGIGSDFDGIDGPPEGLEDPSDLPNLTEELL-KRGYSEEDI 306 (320)
T ss_dssp EEEEESSHHHHSTTHSSG-BHHHHHHHHHHHHHHH-GGGEEEE--BTTTSSHBBTBSSGGGHHHHHHHHH-HTTS-HHHH
T ss_pred EEEEEcchhhhcccccccccHHHHHHHHHHHHHhcCCCeEEECcccCCCCCCCCccCCHHHHHHHHHHHH-HCCCCHHHH
Confidence 334433222111 11123445567888899999999999999943321 1 13344444444444 379999999
Q ss_pred HHHHhHHHHHhcC
Q 019335 329 EWIMGGTIMQLFQ 341 (342)
Q Consensus 329 ~~I~~~NA~rl~~ 341 (342)
++|+|+|+.|+|+
T Consensus 307 ~kI~g~N~lRv~~ 319 (320)
T PF01244_consen 307 EKILGGNFLRVLR 319 (320)
T ss_dssp HHHHTHHHHHHHH
T ss_pred HHHHhHhHHHHhc
Confidence 9999999999985
No 30
>PRK07583 cytosine deaminase-like protein; Validated
Probab=98.44 E-value=3.9e-05 Score=75.27 Aligned_cols=108 Identities=9% Similarity=0.059 Sum_probs=68.2
Q ss_pred ccchHHHHHHHHhCCCcEE----EEEEcCCCCcchHHHHHHHHHhcC-CceEEEecCCCCCCCCcCCcHHHHHHHHHHhh
Q 019335 118 KFDHSLVTSVLKKYPSKFV----GCCLANPAEDVIGIKQLEQLILKD-GFRAVRFNPYLWPSGQQMTNEVGKAMFSKAGE 192 (342)
Q Consensus 118 ~~~N~~~~~~~~~~p~r~~----g~~~i~p~~~~~~~~eler~~~~~-g~~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e 192 (342)
...++.+.++.+.+++++- ++...+....+ ..+++.+.+.+. |+.|.+... ... .++.+.++++.|.+
T Consensus 151 ~~~~~~i~~~~~~~~~~~~~~~v~~~p~~~~~~~-~~~eL~~~v~~~~gv~g~~~~~-----~~~-~d~~l~~i~~lA~~ 223 (438)
T PRK07583 151 AISWEVFAELREAWAGRIALQAVSLVPLDAYLTD-AGERLADLVAEAGGLLGGVTYM-----NPD-LDAQLDRLFRLARE 223 (438)
T ss_pred ccHHHHHHHHHHHhhccCeEEEEEecChhhccCc-hHHHHHHHHHHcCCEEeCCCCC-----CCC-HHHHHHHHHHHHHH
Confidence 3446678788889988763 32233333333 236777776444 677764221 111 56789999999999
Q ss_pred hCCeEEEEeccCCCC---CHHHHHHHH-HhCCCCcEEecccCCC
Q 019335 193 LGVPVGFMCMKGLNL---HISEIEELC-TEFPSTTVLLDHLAFC 232 (342)
Q Consensus 193 ~~lpv~iH~~~~~~~---~~~~l~~l~-~~~P~lk~vl~H~G~~ 232 (342)
+|++|.+|+.+.... .+..+.+.+ +..++-++++.|+...
T Consensus 224 ~G~~v~vH~~E~~~~~~~~l~~~~~~~~~~G~~~~v~i~H~~~l 267 (438)
T PRK07583 224 RGLDLDLHVDETGDPASRTLKAVAEAALRNGFEGKVTCGHCCSL 267 (438)
T ss_pred hCCCcEEeECCCCCchHHHHHHHHHHHHHhCCCCCEEEEeccch
Confidence 999999999643211 133344444 4445567999999873
No 31
>PRK07369 dihydroorotase; Provisional
Probab=98.41 E-value=6.1e-05 Score=73.41 Aligned_cols=249 Identities=12% Similarity=0.057 Sum_probs=139.4
Q ss_pred CeeeeeeeccCCCCccCCCCCCCCCCCCCCCCChHHHHHHhHHCCCceEEEeCCCCCccchHHH----HHHHHhCCC-cE
Q 019335 61 KIIDSHLHVWASPEEAADKFPYFPGQEPTLPGHVDFLLQCMEEASVDGALIVQPINHKFDHSLV----TSVLKKYPS-KF 135 (342)
Q Consensus 61 ~iID~H~Hl~~~~~~~~~~~p~~~~~~~~~~~~~~~ll~~md~~GI~~~v~~~~~~~~~~N~~~----~~~~~~~p~-r~ 135 (342)
-.||+|+|+..+. +. ...+.+..-+..-..||+..+.++...-..++... .+.++.... .|
T Consensus 58 G~ID~H~H~~~~~------~~--------~~e~~~s~~~aa~~GGvTtv~~~pn~~P~~~~~~~~~~~~~~~~~~~~vd~ 123 (418)
T PRK07369 58 GLVDLYSHSGEPG------FE--------ERETLASLAAAAAAGGFTRVAILPDTFPPLDNPATLARLQQQAQQIPPVQL 123 (418)
T ss_pred CEEecccccCCCC------cC--------CCccHHHHHHHHHhCCceEEEECCCCCCCCCCHHHHHHHHHHhcccCceeE
Confidence 5899999986431 10 12455666667778899998887632112233222 222222221 24
Q ss_pred EEEEEcCCCCcchHHHHHHHHHhcCCceEEEecCCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEEeccCC----------
Q 019335 136 VGCCLANPAEDVIGIKQLEQLILKDGFRAVRFNPYLWPSGQQMTNEVGKAMFSKAGELGVPVGFMCMKGL---------- 205 (342)
Q Consensus 136 ~g~~~i~p~~~~~~~~eler~~~~~g~~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH~~~~~---------- 205 (342)
...+.+.+......+++++++ .+.|+++++. .. ...++..+...+++++++|.++.+|+-+..
T Consensus 124 ~~~~~~~~~~~~~~~~ei~~l-~~~Gv~~f~~--~~----~~~~~~~l~~~~~~~~~~~~~v~~H~Ed~~l~~~~~~~~g 196 (418)
T PRK07369 124 HFWGALTLGGQGKQLTELAEL-AAAGVVGFTD--GQ----PLENLALLRRLLEYLKPLGKPVALWPCDRSLAGNGVMREG 196 (418)
T ss_pred EEEEEEeeCCCCccHhhHHHH-HHCCCEEEEC--CC----cCCCHHHHHHHHHHHHhcCCeEEEecCChhhhhcCcccCC
Confidence 434455444332346778777 4679999971 11 123455788999999999999999985321
Q ss_pred --------CC--------CHHHHHHHHHhCCCCcEEecccCCCCCCCCchhhHhHHHHhccc-CCCcEEEecCccccccc
Q 019335 206 --------NL--------HISEIEELCTEFPSTTVLLDHLAFCKPPSNDEESLAFSNLLKLS-RFPQVYVKFSALFRVSR 268 (342)
Q Consensus 206 --------~~--------~~~~l~~l~~~~P~lk~vl~H~G~~~p~~~~~~~~~~~~~~~l~-~~~Nvy~~~S~~~~~~~ 268 (342)
.. .+..+..+++.+ +.++.+.|.... +. .+.+.+.. +.-+|+++++..+....
T Consensus 197 ~~~~~~~~~~~p~~aE~~av~r~~~la~~~-~~~~hi~HvSs~------~~---~~~i~~ak~~g~~vt~Ev~phhL~l~ 266 (418)
T PRK07369 197 LLALRLGLPGDPASAETTALAALLELVAAI-GTPVHLMRISTA------RS---VELIAQAKARGLPITASTTWMHLLLD 266 (418)
T ss_pred hhHHHhCCCCCCHHHHHHHHHHHHHHHHHH-CCcEEEEeCCCH------HH---HHHHHHHHHcCCCeEEEecHHHHhcc
Confidence 00 012455677777 899999999863 11 11122222 22268888875433210
Q ss_pred -------C-----CCCCCCchhHHHHHHHhcCCCcE-EEccC-CCCCCCCC--Ch----------HhHH-HHHHHHHhcC
Q 019335 269 -------M-----PFPYQDLSSPLSQVVSSFGANRV-MWGSD-FPYVVPEC--GY----------KGGR-EAASLIANEV 321 (342)
Q Consensus 269 -------~-----~~~~~~~~~~l~~~i~~~G~dRi-lfGSD-~P~~~~~~--~~----------~~~~-~~~~~~~~~~ 321 (342)
. ..|..+ ..--+.+++.+--..| +.||| .|+...+. ++ ...+ ..++.+.+..
T Consensus 267 ~~~~~~~~~~~kv~PPLR~-~~d~~aL~~~l~~G~Id~i~SDHaP~~~~~K~~~~~~~~~G~~G~e~~l~~~~~~~v~~~ 345 (418)
T PRK07369 267 TEALASYDPNLRLDPPLGN-PSDRQALIEGVRTGVIDAIAIDHAPYTYEEKTVAFAEAPPGAIGLELALPLLWQNLVETG 345 (418)
T ss_pred HHHHhccCCCcEECCCCCC-HHHHHHHHHHHhcCCCCEEEcCCCCCCHHHccCCHhHCCCCceeHHHHHHHHHHHHHHcC
Confidence 0 113222 2333445555422222 88999 57753221 11 1111 1222333345
Q ss_pred CCCHHHHHHHHhHHHHHhcC
Q 019335 322 PLSPSELEWIMGGTIMQLFQ 341 (342)
Q Consensus 322 ~l~~~~~~~I~~~NA~rl~~ 341 (342)
+++.++.-+++..|..++|+
T Consensus 346 ~i~l~~~v~~~s~nPA~~lg 365 (418)
T PRK07369 346 ELSALQLWQALSTNPARCLG 365 (418)
T ss_pred CCCHHHHHHHHHHhHHHHhC
Confidence 78999999999999999986
No 32
>PRK07627 dihydroorotase; Provisional
Probab=98.29 E-value=0.00024 Score=69.46 Aligned_cols=250 Identities=9% Similarity=0.012 Sum_probs=135.2
Q ss_pred CeeeeeeeccCCCCccCCCCCCCCCCCCCCCCChHHHHHHhHHCCCceEEEeCCCCCccchH----HHHHHHHhCCC-cE
Q 019335 61 KIIDSHLHVWASPEEAADKFPYFPGQEPTLPGHVDFLLQCMEEASVDGALIVQPINHKFDHS----LVTSVLKKYPS-KF 135 (342)
Q Consensus 61 ~iID~H~Hl~~~~~~~~~~~p~~~~~~~~~~~~~~~ll~~md~~GI~~~v~~~~~~~~~~N~----~~~~~~~~~p~-r~ 135 (342)
-.||.|+|+-.+ ++. ...+.+...+..-..||+..+.++......++. .+.+..+.... .+
T Consensus 56 G~iD~H~H~~~~------g~~--------~~e~~~t~s~aa~~gGvTtv~~~p~~~p~~~~~~~~~~~~~~~~~~~~~~~ 121 (425)
T PRK07627 56 GLVDLSARLREP------GYE--------YKATLESEMAAAVAGGVTSLVCPPDTDPVLDEPGLVEMLKFRARNLNQAHV 121 (425)
T ss_pred cEEeccccccCC------Ccc--------ccCcHHHHHHHHHhCCeeEEEeCCCCCCCCCCHHHHHHHHHHhhccCceeE
Confidence 589999999532 110 123555566666778999988765321122232 22222222111 23
Q ss_pred EEEEEcCCCCcchHHHHHHHHHhcCCceEEEecCCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEEeccCC-------C--
Q 019335 136 VGCCLANPAEDVIGIKQLEQLILKDGFRAVRFNPYLWPSGQQMTNEVGKAMFSKAGELGVPVGFMCMKGL-------N-- 206 (342)
Q Consensus 136 ~g~~~i~p~~~~~~~~eler~~~~~g~~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH~~~~~-------~-- 206 (342)
++...+-.......++++++++ +.|++|++... ....++..+...+++++++|.++.+|+-+.. .
T Consensus 122 ~~~~~~~~g~~~~~~~~i~~l~-~~G~~~fk~~~-----~~~~~~~~l~~~~~~~~~~~~~v~~H~E~~~~~~~~~~~~g 195 (425)
T PRK07627 122 YPLGALTVGLKGEVLTEMVELT-EAGCVGFSQAN-----VPVVDTQVLLRALQYASTFGFTVWLRPLDAFLGRGGVAASG 195 (425)
T ss_pred EEeCeEEcCCCccCHHHHHHHH-hCCEEEEEcCC-----cccCCHHHHHHHHHHHHhcCCEEEEecCChhhhhCCCcCCC
Confidence 3332221111112467888884 67999999531 1245677899999999999999999986421 0
Q ss_pred ---------C--------CHHHHHHHHHhCCCCcEEecccCCCCCCCCchhhHhHHHHhccc-CCCcEEEecCcccccc-
Q 019335 207 ---------L--------HISEIEELCTEFPSTTVLLDHLAFCKPPSNDEESLAFSNLLKLS-RFPQVYVKFSALFRVS- 267 (342)
Q Consensus 207 ---------~--------~~~~l~~l~~~~P~lk~vl~H~G~~~p~~~~~~~~~~~~~~~l~-~~~Nvy~~~S~~~~~~- 267 (342)
. .+..+..+++.+ +.++.+.|+... +. .+.+.... +.-+|+++++.-+...
T Consensus 196 ~~~~~~~~~~~P~~aE~~av~r~~~la~~~-~~~~hi~HvSs~------~~---~~~i~~ak~~g~~vt~Ev~ph~L~l~ 265 (425)
T PRK07627 196 AVASRLGLSGVPVAAETIALHTIFELMRVT-GARVHLARLSSA------AG---VALVRAAKAEGLPVTCDVGVNHVHLI 265 (425)
T ss_pred HhHHHcCCCCCCHHHHHHHHHHHHHHHHHH-CCcEEEEeCCCH------HH---HHHHHHHHHCCCCeEEEeccchheEe
Confidence 0 112345566666 689999999873 11 11122121 2235777777543221
Q ss_pred c-----------CCCCCCCchhHHHHHHHhcCCC-cEEEccCC-CCCCCCC--Ch----------HhHHHHHHHHHhcCC
Q 019335 268 R-----------MPFPYQDLSSPLSQVVSSFGAN-RVMWGSDF-PYVVPEC--GY----------KGGREAASLIANEVP 322 (342)
Q Consensus 268 ~-----------~~~~~~~~~~~l~~~i~~~G~d-RilfGSD~-P~~~~~~--~~----------~~~~~~~~~~~~~~~ 322 (342)
. ...|..+ ..--+.+.+.+-.. -.++|||. |+...+. .+ ......+.......+
T Consensus 266 ~~~~~~~~~~~k~~PPLR~-~~d~~~L~~~l~~G~id~i~SDHaP~~~~~k~~~~~~~~~G~~g~e~~~pl~~~~~~~~~ 344 (425)
T PRK07627 266 DVDIGYFDSQFRLDPPLRS-QRDREAIRAALADGTIDAICSDHTPVDDDEKLLPFAEATPGATGLELLLPLTLKWADEAK 344 (425)
T ss_pred HhHHhccCCceEEeCCCCC-HHHHHHHHHHHhcCCCcEEEcCCCCCCHHHccCCHhhCCCCceeHHHHHHHHHHHHHhCC
Confidence 0 0112222 12233444444222 34789998 8753110 11 111111111222357
Q ss_pred CCHHHHHHHHhHHHHHhcC
Q 019335 323 LSPSELEWIMGGTIMQLFQ 341 (342)
Q Consensus 323 l~~~~~~~I~~~NA~rl~~ 341 (342)
++.++.-+.+..|+.++|+
T Consensus 345 i~~~~~l~~~t~~pA~~lg 363 (425)
T PRK07627 345 VPLARALARITSAPARVLG 363 (425)
T ss_pred CCHHHHHHHHHHHHHHHhC
Confidence 8999999999999999886
No 33
>TIGR01975 isoAsp_dipep isoaspartyl dipeptidase IadA. The L-isoaspartyl derivative of Asp arises non-enzymatically over time as a form of protein damage. In this isomerization, the connectivity of the polypeptide changes to pass through the beta-carboxyl of the side chain. Much but not all of this damage can be repaired by protein-L-isoaspartate (D-aspartate) O-methyltransferase. This model describes the isoaspartyl dipeptidase IadA, apparently one of two such enzymes in E. coli, an enzyme that degrades isoaspartyl dipeptides and may unblock degradation of proteins that cannot be repaired. This model also describes closely related proteins from other species (e.g. Clostridium perfringens, Thermoanaerobacter tengcongensis) that we assume to be equivalent in function. This family shows homology to dihydroorotases.
Probab=98.28 E-value=0.00013 Score=70.25 Aligned_cols=259 Identities=12% Similarity=0.029 Sum_probs=134.4
Q ss_pred CCeeeeeeeccCCCCccCCCCCCCCCCCCCCCCChHHHHHHhHHCCCceEEEeCCC-CCccchHHHHHHHHhCCC-cEEE
Q 019335 60 VKIIDSHLHVWASPEEAADKFPYFPGQEPTLPGHVDFLLQCMEEASVDGALIVQPI-NHKFDHSLVTSVLKKYPS-KFVG 137 (342)
Q Consensus 60 ~~iID~H~Hl~~~~~~~~~~~p~~~~~~~~~~~~~~~ll~~md~~GI~~~v~~~~~-~~~~~N~~~~~~~~~~p~-r~~g 137 (342)
.-.||+|+|++--.. ...+ ...+.+.-+.+|=+.||+..+=+... .....-+.+.+.++.+-. -+.+
T Consensus 56 PGlID~HvH~~~gg~---~~~~--------~~~~~e~~~~e~l~~GvTTv~d~~g~~~~~~~~~~~~a~~~al~~~Gir~ 124 (389)
T TIGR01975 56 PGFIDQHVHIIGGGG---EGGP--------TTRTPELTLSDITKGGVTTVVGLLGTDGITRHMESLLAKARALEEEGISC 124 (389)
T ss_pred cCEeehhhccccccc---cCCC--------ccCCHHHHHHHHHhCCcEEEecCcccCccccChhhHHHHHHHHHHhCCEE
Confidence 368999999973100 0000 11345556778889999988743211 111111222223332211 2332
Q ss_pred EEE-----cC-CCCcchHHHHHHHHHhcCCceEEE-ecCCCCCCCCcCCcHHHHHHHHHHhhhC----Ce--EEEEeccC
Q 019335 138 CCL-----AN-PAEDVIGIKQLEQLILKDGFRAVR-FNPYLWPSGQQMTNEVGKAMFSKAGELG----VP--VGFMCMKG 204 (342)
Q Consensus 138 ~~~-----i~-p~~~~~~~~eler~~~~~g~~Gvk-~~~~~~~~g~~l~~~~~~~~~~~a~e~~----lp--v~iH~~~~ 204 (342)
+.. ++ +.-.......+ ..-.-+.|++ +-...+ ......-+.+..+-+.++..| +| |.+|++++
T Consensus 125 ~~~~g~~~~p~~t~t~~~~~d~---~~~d~iiG~~~ia~sd~-r~~~~~~~~l~~~~~~~~~~g~~~~~~g~~~vH~g~~ 200 (389)
T TIGR01975 125 YMLTGAYHVPSRTITGSVESDL---LLIDKVIGVGEIAISDH-RSAQPTVEHLTNMAAEARVGGLLGGKPGIVNFHVGDS 200 (389)
T ss_pred EEEcccccCCCcccccchhhhe---eeehhhcccceEEEccC-cCCCCCHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCc
Confidence 221 11 11111111112 1233455664 433222 123455567778888888888 99 99999976
Q ss_pred CCCCHHHHHHHHHhCCCCcEEecccCCCCCCCCchhhHhHHHHhcccCCCcEEEecCcccccccCCCCCCCchhHHHHHH
Q 019335 205 LNLHISEIEELCTEFPSTTVLLDHLAFCKPPSNDEESLAFSNLLKLSRFPQVYVKFSALFRVSRMPFPYQDLSSPLSQVV 284 (342)
Q Consensus 205 ~~~~~~~l~~l~~~~P~lk~vl~H~G~~~p~~~~~~~~~~~~~~~l~~~~Nvy~~~S~~~~~~~~~~~~~~~~~~l~~~i 284 (342)
+..++.+.+++++.. |..|+..++. + .+.-.-+.+.++..+.. .++|+..-+....-..........++.++
T Consensus 201 -~~~l~~l~~~~~~~d----i~~~~f~pth-~-~r~~~l~~~~i~~~~~g-g~iDv~~~~~~~~l~~~~~~~~~~~~~~~ 272 (389)
T TIGR01975 201 -KRALQPIYELVENTD----VPITQFLPTH-I-NRNVPLFEAGLEFAKKG-GTIDLTSSIDPQFRKEGEVAPAEGIKKAL 272 (389)
T ss_pred -hhhHHHHHHHHHhcC----CChhheecCc-c-CCCHHHHHHHHHHHHhC-CcEEEeCCCCccchhccccChHHHHHHHH
Confidence 456778888888774 4557766542 2 22223344444443333 46676632221100000011223566666
Q ss_pred Hhc-CCCcEEEccCCCCCCCC------------CChHhHHHHHHHHHhcCCCCHHHHHHHHhHHHHHhcC
Q 019335 285 SSF-GANRVMWGSDFPYVVPE------------CGYKGGREAASLIANEVPLSPSELEWIMGGTIMQLFQ 341 (342)
Q Consensus 285 ~~~-G~dRilfGSD~P~~~~~------------~~~~~~~~~~~~~~~~~~l~~~~~~~I~~~NA~rl~~ 341 (342)
+.- .++|+.+|||.....+. .+.......++.+.+..+++.++.=+....|+.++++
T Consensus 273 ~~Gv~~~~i~isSD~~gs~p~~~~~g~~~~~g~g~~~sl~~~~~~lv~~g~ls~~eal~~~T~npA~~Lg 342 (389)
T TIGR01975 273 EAGVPLEKVTFSSDGNGSQPFFDENGELTGLGVGSFETLFEEVREAVKDGDVPLEKALRVITSNVAGVLN 342 (389)
T ss_pred HcCCCcceEEEEeCCCCCCCccccccccccCCcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhC
Confidence 652 36899999997532211 0122233445444443458999888888999999875
No 34
>COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog [Amino acid transport and metabolism]
Probab=98.27 E-value=6.7e-05 Score=69.22 Aligned_cols=181 Identities=18% Similarity=0.180 Sum_probs=106.5
Q ss_pred HHHHHHHHhcCCceEEEecCC---CCCCCCc-CC----cHHHHHHHHHHhhhCCeEE-EEeccCCCCCHHHHHHHHHhCC
Q 019335 150 IKQLEQLILKDGFRAVRFNPY---LWPSGQQ-MT----NEVGKAMFSKAGELGVPVG-FMCMKGLNLHISEIEELCTEFP 220 (342)
Q Consensus 150 ~~eler~~~~~g~~Gvk~~~~---~~~~g~~-l~----~~~~~~~~~~a~e~~lpv~-iH~~~~~~~~~~~l~~l~~~~P 220 (342)
+..|+.+ .+.|++-+.+.-+ .+.+|.. .. .+.-+++.++|+++|++|. -|+++. .+.++++ ++
T Consensus 111 l~~L~~~-~~~GvR~lgltwn~~N~~g~g~~~~~~~GLs~~Gk~lV~~~N~LgIiiDlSH~s~k------t~~Dvl~-~s 182 (313)
T COG2355 111 LDKLELF-HALGVRSLGLTWNRDNLFGDGCYERTGGGLTPFGKELVREMNELGIIIDLSHLSDK------TFWDVLD-LS 182 (313)
T ss_pred HHHHHHH-HHhCceEEEeeeccCCcccCccCCCCCCCCCHHHHHHHHHHHhcCCEEEecccCCc------cHHHHHh-cc
Confidence 5667776 5778876665421 1222211 11 2567899999999999994 466532 2334333 36
Q ss_pred CCcEEecccCCCCCCCCchhhHhHHHHhcccCCCcEEEecCccccccc----CCCCCCCchhHHHHHHHhcCCCcEEEcc
Q 019335 221 STTVLLDHLAFCKPPSNDEESLAFSNLLKLSRFPQVYVKFSALFRVSR----MPFPYQDLSSPLSQVVSSFGANRVMWGS 296 (342)
Q Consensus 221 ~lk~vl~H~G~~~p~~~~~~~~~~~~~~~l~~~~Nvy~~~S~~~~~~~----~~~~~~~~~~~l~~~i~~~G~dRilfGS 296 (342)
+..+|..|+..-.-.-..++.... ++..+++.+.| +.+.....+-+ ...+.+++.+.+.++++.+|.|.|-+||
T Consensus 183 ~~PviaSHSN~~al~~h~RNl~D~-qlkaI~~~gGv-Igv~~~~~fl~~~~~~~atldd~v~hI~h~v~~~G~dhVglGs 260 (313)
T COG2355 183 KAPVVASHSNARALVDHPRNLSDE-QLKAIAETGGV-IGVNFIPAFLRPGGAARATLDDLVRHIDHFVELVGIDHVGLGS 260 (313)
T ss_pred CCceEEecCCchhccCCCCCCCHH-HHHHHHhcCCE-EEEEeehhhccCCCCCCCCHHHHHHHHHHHHHhcCcceeEecc
Confidence 667888899763211111221111 12333333322 22222222211 1223456677888999999999999999
Q ss_pred CCCCCCCC----CChHhHHHHHHHHHhcCCCCHHHHHHHHhHHHHHhcC
Q 019335 297 DFPYVVPE----CGYKGGREAASLIANEVPLSPSELEWIMGGTIMQLFQ 341 (342)
Q Consensus 297 D~P~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~I~~~NA~rl~~ 341 (342)
||-+.... .+..+..+.++.+. ..++++++.++|+++|..|.++
T Consensus 261 Df~g~~~~p~gled~~~l~~l~~~L~-~~G~~e~~i~~i~~~N~lRV~~ 308 (313)
T COG2355 261 DFDGGTGPPDGLEDVGKLPNLTAALI-ERGYSEEEIEKIAGENWLRVLK 308 (313)
T ss_pred cccCCCCCchhhcChhHHHHHHHHHH-HcCCCHHHHHHHHHHhHHHHHH
Confidence 98665442 12233334444444 4689999999999999999874
No 35
>TIGR00857 pyrC_multi dihydroorotase, multifunctional complex type. All proteins described by this model should represent active and inactive dihydroorotase per se and functionally equivalent domains of multifunctional proteins from higher eukaryotes, but exclude related proteins such as allantoinase.
Probab=98.26 E-value=0.00025 Score=68.99 Aligned_cols=250 Identities=12% Similarity=0.085 Sum_probs=131.6
Q ss_pred CeeeeeeeccCCCCccCCCCCCCCCCCCCCCCChHHHHHHhHHCCCceEEEeCCCCCccchH-HH---HHHHHhCC-CcE
Q 019335 61 KIIDSHLHVWASPEEAADKFPYFPGQEPTLPGHVDFLLQCMEEASVDGALIVQPINHKFDHS-LV---TSVLKKYP-SKF 135 (342)
Q Consensus 61 ~iID~H~Hl~~~~~~~~~~~p~~~~~~~~~~~~~~~ll~~md~~GI~~~v~~~~~~~~~~N~-~~---~~~~~~~p-~r~ 135 (342)
-.||.|+|+.++.. ....+.+...+.+-..||+..+.++......++. .+ .+..+... -.|
T Consensus 40 G~ID~H~H~~~~~~--------------~~~~~~~~~~~~~~~~GvTtv~~~~~t~p~~~~~~~l~~~~~~~~~~~~vd~ 105 (411)
T TIGR00857 40 GFIDLHVHLRDPGE--------------EYKEDIESGSKAAAHGGFTTVADMPNTKPPIDTPETLEWKLQRLKKVSLVDV 105 (411)
T ss_pred CEEEcccCCCCCCC--------------ccHhHHHHHHHHHHhCCeEEEEEecCCCCCCCcHHHHHHHHHHhccCCcccE
Confidence 58999999964210 0123445555667788999988775322122222 22 22222211 123
Q ss_pred EEEEEcCCCCcchHHHHHHHHHhcCCceE--EEecCCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEEeccCC--------
Q 019335 136 VGCCLANPAEDVIGIKQLEQLILKDGFRA--VRFNPYLWPSGQQMTNEVGKAMFSKAGELGVPVGFMCMKGL-------- 205 (342)
Q Consensus 136 ~g~~~i~p~~~~~~~~eler~~~~~g~~G--vk~~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH~~~~~-------- 205 (342)
...+.+........++++.++. +.|++| ++... ....++..+.+++++|+++|+++.+|+.+..
T Consensus 106 ~~~~~~~~~~~~~~l~e~~~l~-~~Gv~g~~f~~~~-----~~~~~~~~l~~~~~~a~~~g~~v~iH~E~~~l~~~~~~~ 179 (411)
T TIGR00857 106 HLYGGVTQGNQGKELTEAYELK-EAGAVGRMFTDDG-----SEVQDILSMRRALEYAAIAGVPIALHAEDPDLIYGGVMH 179 (411)
T ss_pred EEEEEEecCCccccHHHHHHHH-HCCcEEEEEEeCC-----cccCCHHHHHHHHHHHHHcCCEEEEecCCHHHHhhhhhc
Confidence 3344443332222356676663 569999 44321 1235677899999999999999999975320
Q ss_pred ----------CC--------CHHHHHHHHHhCCCCcEEecccCCCCCCCCchhhHhHHHHhccc-CCCcEEEecCccccc
Q 019335 206 ----------NL--------HISEIEELCTEFPSTTVLLDHLAFCKPPSNDEESLAFSNLLKLS-RFPQVYVKFSALFRV 266 (342)
Q Consensus 206 ----------~~--------~~~~l~~l~~~~P~lk~vl~H~G~~~p~~~~~~~~~~~~~~~l~-~~~Nvy~~~S~~~~~ 266 (342)
.. .+..+..+++.+ +.++.+.|.... +. .+.+.... +.-+|+++++..+..
T Consensus 180 ~g~~~~~~~~~~~p~~aE~~ai~~~~~la~~~-~~~~~i~Hvs~~------~~---l~~i~~a~~~g~~v~~ev~ph~L~ 249 (411)
T TIGR00857 180 EGPSAAQLGLPARPPEAEEVAVARLLELAKHA-GCPVHICHISTK------ES---LELIVKAKSQGIKITAEVTPHHLL 249 (411)
T ss_pred CCcccHhhCCCCCCHHHHHHHHHHHHHHHHHH-CCCEEEEeCCCH------HH---HHHHHHHHHcCCcEEEeechhhhe
Confidence 00 112455667666 799999999862 11 11122111 222688887653321
Q ss_pred cc------------CCCCCCCchhHHHHHHHhcCCC-cEEEccC-CCCCCCCC------------ChHhHHHHHHHHHhc
Q 019335 267 SR------------MPFPYQDLSSPLSQVVSSFGAN-RVMWGSD-FPYVVPEC------------GYKGGREAASLIANE 320 (342)
Q Consensus 267 ~~------------~~~~~~~~~~~l~~~i~~~G~d-RilfGSD-~P~~~~~~------------~~~~~~~~~~~~~~~ 320 (342)
.. ...|... ..--..+++.+-.. --+.||| .|+..... ........+......
T Consensus 250 ~~~~~~~~~~~~~k~~Pplr~-~~~~~~L~~~l~~g~i~~i~sDh~p~~~~~k~~~~~~~~~G~~g~e~~~~~~~~~~~~ 328 (411)
T TIGR00857 250 LSEEDVARLDGNGKVNPPLRE-KEDRLALIEGLKDGIIDIIATDHAPHTLEEKTKEFAAAPPGIPGLETALPLLLQLLVK 328 (411)
T ss_pred ecHHHHhCCCccEEEcCCCCC-HHHHHHHHHHHhcCCCcEEEcCCCCCChHHccCCHhhCCCCceeHHHHHHHHHHHHHh
Confidence 00 0112221 11222333333111 2278999 46542111 111112222222222
Q ss_pred CCCCHHHHHHHHhHHHHHhcC
Q 019335 321 VPLSPSELEWIMGGTIMQLFQ 341 (342)
Q Consensus 321 ~~l~~~~~~~I~~~NA~rl~~ 341 (342)
..++.++.-+.+..|..++++
T Consensus 329 ~~~~~~~~~~~~t~~pa~~~g 349 (411)
T TIGR00857 329 GLISLKDLIRMLSINPARIFG 349 (411)
T ss_pred CCCCHHHHHHHHhHHHHHHhC
Confidence 368999999999999999885
No 36
>cd01297 D-aminoacylase D-aminoacylases (N-acyl-D-Amino acid amidohydrolases) catalyze the hydrolysis of N-acyl-D-amino acids to produce the corresponding D-amino acids, which are used as intermediates in the synthesis of pesticides, bioactive peptides, and antibiotics.
Probab=98.26 E-value=0.00015 Score=70.63 Aligned_cols=172 Identities=17% Similarity=0.065 Sum_probs=103.9
Q ss_pred HHHHHHHHHh---cCCceEEEecCCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEEeccCCCC---CHHHHHHHHHhCCCC
Q 019335 149 GIKQLEQLIL---KDGFRAVRFNPYLWPSGQQMTNEVGKAMFSKAGELGVPVGFMCMKGLNL---HISEIEELCTEFPST 222 (342)
Q Consensus 149 ~~~eler~~~---~~g~~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH~~~~~~~---~~~~l~~l~~~~P~l 222 (342)
.+++++++++ +.|+.|++....+. .+...++..+..+++++.++|.+|.+|+...... .+..+..++++. +.
T Consensus 165 ~~~~~~~l~~~al~~Ga~g~~~~~~y~-~~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~e~~av~~~~~~a~~~-g~ 242 (415)
T cd01297 165 ELAKMRELLREALEAGALGISTGLAYA-PRLYAGTAELVALARVAARYGGVYQTHVRYEGDSILEALDELLRLGRET-GR 242 (415)
T ss_pred HHHHHHHHHHHHHHCCCeEEEcccccC-CcccCCHHHHHHHHHHHHHcCCEEEEEECcccccHHHHHHHHHHHHHHh-CC
Confidence 3556666542 57999999765432 1235678899999999999999999999743211 234556666666 78
Q ss_pred cEEecccCCCCCCCCchhhHhHHHHh----ccc-CCCcEEEecCcccccccCCCCCCCchhHHHHHHHhcCCCcEEEccC
Q 019335 223 TVLLDHLAFCKPPSNDEESLAFSNLL----KLS-RFPQVYVKFSALFRVSRMPFPYQDLSSPLSQVVSSFGANRVMWGSD 297 (342)
Q Consensus 223 k~vl~H~G~~~p~~~~~~~~~~~~~~----~l~-~~~Nvy~~~S~~~~~~~~~~~~~~~~~~l~~~i~~~G~dRilfGSD 297 (342)
++.+.|+...... ....+.+++ +.. +.-+|++++...+... ...++.+++. ...+.|||
T Consensus 243 r~~i~H~ss~~~~----~~~~~~~~l~~i~~a~~~G~~v~~e~~p~~~~~---------~~~~~~l~~~---~~~~i~SD 306 (415)
T cd01297 243 PVHISHLKSAGAP----NWGKIDRLLALIEAARAEGLQVTADVYPYGAGS---------EDDVRRIMAH---PVVMGGSD 306 (415)
T ss_pred CEEEEEEecCCCc----ccchHHHHHHHHHHHHHhCCcEEEEeCCCCCCc---------HHHHHHHHcC---CCceeeeC
Confidence 9999999864210 011122211 221 2347888877532211 2345666655 57899999
Q ss_pred C-CC----CCCCCChHhHHHHHHHHHhcC-CCCHHHHHHHHhHHHHHhcC
Q 019335 298 F-PY----VVPECGYKGGREAASLIANEV-PLSPSELEWIMGGTIMQLFQ 341 (342)
Q Consensus 298 ~-P~----~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~I~~~NA~rl~~ 341 (342)
- |. ......+.. .+....... .++.++.-+.+..|+.++|+
T Consensus 307 h~~~~~~~~~~~~~~~~---~l~~~~~~~~~~~~~~~~~~~t~~pA~~~g 353 (415)
T cd01297 307 GGALGKPHPRSYGDFTR---VLGHYVRERKLLSLEEAVRKMTGLPARVFG 353 (415)
T ss_pred CCcCCCCCcchhCCHHH---HHHHHhcccCCCCHHHHHHHHHHHHHHHhC
Confidence 5 32 111122222 221222122 38888888889999999885
No 37
>cd01317 DHOase_IIa Dihydroorotase (DHOase), subgroup IIa; DHOases catalyze the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in pyrimidine biosynthesis. This subgroup also contains proteins that lack the active site, like unc-33, a C.elegans protein involved in axon growth.
Probab=98.24 E-value=0.0005 Score=66.07 Aligned_cols=150 Identities=13% Similarity=0.111 Sum_probs=93.1
Q ss_pred CeeeeeeeccCCCCccCCCCCCCCCCCCCCCCChHHHHHHhHHCCCceEEEeCCCCCccch-HHHH---HHHHhCCC-cE
Q 019335 61 KIIDSHLHVWASPEEAADKFPYFPGQEPTLPGHVDFLLQCMEEASVDGALIVQPINHKFDH-SLVT---SVLKKYPS-KF 135 (342)
Q Consensus 61 ~iID~H~Hl~~~~~~~~~~~p~~~~~~~~~~~~~~~ll~~md~~GI~~~v~~~~~~~~~~N-~~~~---~~~~~~p~-r~ 135 (342)
..||.|+|+.++ .++ ...+.+..-+..-..||+..+.++...-..++ +.+. +.+++.+- -+
T Consensus 15 G~iD~HvH~~~~------~~~--------~~e~~~s~s~aA~~GGvTtii~~p~~~p~~~~~~~~~~~~~~~~~~~~~~~ 80 (374)
T cd01317 15 GLVDLHVHLREP------GFE--------YKETLESGAKAAAAGGFTTVVCMPNTNPVIDNPAVVELLKNRAKDVGIVRV 80 (374)
T ss_pred CEEeeccccCCC------Ccc--------ccchHHHHHHHHHhCCCcEEEECCCCCCCCCCHHHHHHHHHHhccCCceeE
Confidence 579999999653 111 12355566666777899999987532112222 2222 22233321 13
Q ss_pred EEEEEcCCCCcchHHHHHHHHHhcCCceEEEecCCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEEeccCC----------
Q 019335 136 VGCCLANPAEDVIGIKQLEQLILKDGFRAVRFNPYLWPSGQQMTNEVGKAMFSKAGELGVPVGFMCMKGL---------- 205 (342)
Q Consensus 136 ~g~~~i~p~~~~~~~~eler~~~~~g~~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH~~~~~---------- 205 (342)
..++.+......+.++++.++. +.|+.+++... ....++..+...++.++++|.+|.+|+-+..
T Consensus 81 ~~~~~~~~~~~~~~~~~i~~l~-~~G~~~~k~~~-----~~~~~~~~l~~~~~~~~~~g~~v~~H~E~~~~~~~~~~~~g 154 (374)
T cd01317 81 LPIGALTKGLKGEELTEIGELL-EAGAVGFSDDG-----KPIQDAELLRRALEYAAMLDLPIIVHPEDPSLAGGGVMNEG 154 (374)
T ss_pred EEEEEEeeCCCcccHHHHHHHH-HCCcEEEEcCC-----cCCCCHHHHHHHHHHHHhcCCeEEEecCChhhhhccCccCC
Confidence 3344554433332467888874 67999998431 1245788899999999999999999995310
Q ss_pred --------CC--------CHHHHHHHHHhCCCCcEEecccCC
Q 019335 206 --------NL--------HISEIEELCTEFPSTTVLLDHLAF 231 (342)
Q Consensus 206 --------~~--------~~~~l~~l~~~~P~lk~vl~H~G~ 231 (342)
.. .+..+..+++++. +++.+.|+..
T Consensus 155 ~~~~~~~~~~~p~~~e~~~v~~~~~la~~~~-~~i~i~h~ss 195 (374)
T cd01317 155 KVASRLGLPGIPPEAETIMVARDLELAEATG-ARVHFQHLST 195 (374)
T ss_pred hhhHHhCCCCCCHHHHHHHHHHHHHHHHHhC-CcEEEEeCCC
Confidence 00 1224567788884 9999999975
No 38
>PRK08417 dihydroorotase; Provisional
Probab=98.21 E-value=0.0004 Score=67.05 Aligned_cols=245 Identities=13% Similarity=0.168 Sum_probs=137.5
Q ss_pred CeeeeeeeccCCCCccCCCCCCCCCCCCCCCCChHHHHHHhHHCCCceEEEeCCCCCccchHHHHHHH----HhCCCcEE
Q 019335 61 KIIDSHLHVWASPEEAADKFPYFPGQEPTLPGHVDFLLQCMEEASVDGALIVQPINHKFDHSLVTSVL----KKYPSKFV 136 (342)
Q Consensus 61 ~iID~H~Hl~~~~~~~~~~~p~~~~~~~~~~~~~~~ll~~md~~GI~~~v~~~~~~~~~~N~~~~~~~----~~~p~r~~ 136 (342)
-+||.|+|+..+ .+. ..+.+..-+..-..||+..+.++...-..++....+.. +..+..++
T Consensus 31 G~ID~HvH~~~~------~~~---------~e~~~t~s~aA~aGGvTtv~dmpnt~P~~~~~~~~~~~~~~~~~~~~~~~ 95 (386)
T PRK08417 31 ALVDLNVSLKND------SLS---------SKNLKSLENECLKGGVGSIVLYPDSTPAIDNEIALELINSAQRELPMQIF 95 (386)
T ss_pred CeeEEeeeeCCC------CcC---------hhhHHHHHHHHHcCCcEEEEeCCCCCCCCCCHHHHHHHHHHhhccCCcEE
Confidence 589999999642 110 12334444555678999988875321122232222222 22222244
Q ss_pred EEEEcCCCCcchHHHHHHHHHhcCCceEEEecCCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEEeccCC-----------
Q 019335 137 GCCLANPAEDVIGIKQLEQLILKDGFRAVRFNPYLWPSGQQMTNEVGKAMFSKAGELGVPVGFMCMKGL----------- 205 (342)
Q Consensus 137 g~~~i~p~~~~~~~~eler~~~~~g~~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH~~~~~----------- 205 (342)
.+..+. . .++..+++++++ +.|+.+++... .+++..+..+++.+.++|++|.+|+-+..
T Consensus 96 ~~~~~~-~-~~~~~~~i~~l~-~~Gv~~~k~~~-------~~~~~~l~~~~~~a~~~g~~V~~HaEd~~~~~~~~~~~g~ 165 (386)
T PRK08417 96 PSIRAL-D-EDGKLSNIATLL-KKGAKALELSS-------DLDANLLKVIAQYAKMLDVPIFCRCEDSSFDDSGVMNDGE 165 (386)
T ss_pred EEEEEE-C-CCccHHHHHHHH-HCCCEEEECCC-------CCCHHHHHHHHHHHHHcCCEEEEeCCCHHHhhHHHHhcCh
Confidence 333332 1 222467888884 77999998531 35678899999999999999999985320
Q ss_pred -------CC--------CHHHHHHHHHhCCCCcEEecccCCCCCCCCchhhHhHHHHhccc-CCCcEEEecCccccccc-
Q 019335 206 -------NL--------HISEIEELCTEFPSTTVLLDHLAFCKPPSNDEESLAFSNLLKLS-RFPQVYVKFSALFRVSR- 268 (342)
Q Consensus 206 -------~~--------~~~~l~~l~~~~P~lk~vl~H~G~~~p~~~~~~~~~~~~~~~l~-~~~Nvy~~~S~~~~~~~- 268 (342)
.. .+..+..+++.+ +.++-+.|.... +. .+.+.+.. +.-+|.++++..+....
T Consensus 166 ~~~~~~~~~rp~~aE~~~v~~~~~la~~~-~~~lhi~hvS~~------~~---~~~i~~ak~~g~~vt~ev~ph~L~l~~ 235 (386)
T PRK08417 166 LSFELGLPGIPSIAETKEVAKMKELAKFY-KNKVLFDTLALP------RS---LELLDKFKSEGEKLLKEVSIHHLILDD 235 (386)
T ss_pred hhHHhCCCCCCHHHHHHHHHHHHHHHHHh-CCCEEEEeCCCH------HH---HHHHHHHHHCCCCEEEEechHHHeeCH
Confidence 00 122456677777 589999999863 11 11121111 22257777775432210
Q ss_pred -----------CCCCCCCchhHHHHHHHhcCCCcE-EEccC-CCCCCCCC--ChH----------hHHHHHH-HHHhcCC
Q 019335 269 -----------MPFPYQDLSSPLSQVVSSFGANRV-MWGSD-FPYVVPEC--GYK----------GGREAAS-LIANEVP 322 (342)
Q Consensus 269 -----------~~~~~~~~~~~l~~~i~~~G~dRi-lfGSD-~P~~~~~~--~~~----------~~~~~~~-~~~~~~~ 322 (342)
...|..+ ..--+.+++.+--..| +.+|| .|+...+. ++. ..+..+. .+.+...
T Consensus 236 ~~~~~~~~~~k~~PPlR~-~~d~~~L~~~l~~g~Id~i~SDHaP~~~~~K~~~~~~a~~G~~g~e~~~~~~~~~~v~~~~ 314 (386)
T PRK08417 236 SACENFNTAAKLNPPLRS-KEDRLALLEALKEGKIDFLTSLHSAKSNSKKDLAFDEAAFGIDSICEYFSLCYTYLVKEGI 314 (386)
T ss_pred HHhcCcCcccEECCCCCC-HHHHHHHHHHHhcCCceEEEcCCCCCCHHHccCCHhHCCCCchHHHHHHHHHHHHHHhcCC
Confidence 0113222 2334566666533456 78999 57743221 111 1111221 1222345
Q ss_pred CCHHHHHHHHhHHHHHhcC
Q 019335 323 LSPSELEWIMGGTIMQLFQ 341 (342)
Q Consensus 323 l~~~~~~~I~~~NA~rl~~ 341 (342)
++.++.-+.+..|..++|+
T Consensus 315 ~~~~~~~~~~t~~pA~~lg 333 (386)
T PRK08417 315 ITWSELSRFTSYNPAQFLG 333 (386)
T ss_pred CCHHHHHHHHHHHHHHHhC
Confidence 8999999999999999986
No 39
>PLN02795 allantoinase
Probab=98.19 E-value=0.00036 Score=69.74 Aligned_cols=256 Identities=13% Similarity=0.027 Sum_probs=134.6
Q ss_pred CeeeeeeeccCCCCccCCCCCCCCCCCCCCCCChHHHHHHhHHCCCceEEEeCCC-CCccchHHHHHHHHhC--CCcEEE
Q 019335 61 KIIDSHLHVWASPEEAADKFPYFPGQEPTLPGHVDFLLQCMEEASVDGALIVQPI-NHKFDHSLVTSVLKKY--PSKFVG 137 (342)
Q Consensus 61 ~iID~H~Hl~~~~~~~~~~~p~~~~~~~~~~~~~~~ll~~md~~GI~~~v~~~~~-~~~~~N~~~~~~~~~~--p~r~~g 137 (342)
-.||+|+|+.++.. . .+.+.....+..-..||+..+.++.. .-..++....+...+. ..-++-
T Consensus 100 G~ID~H~H~~~~~~---------~-----~~e~~~~~~~aa~~gGvTtv~dmp~~~~P~~~~~~~~~~~~~~~~~~~~vd 165 (505)
T PLN02795 100 GLIDVHVHLNEPGR---------T-----EWEGFPTGTKAAAAGGITTLVDMPLNSFPSTTSVETLELKIEAAKGKLYVD 165 (505)
T ss_pred CEEecccCcCCCCc---------c-----chhHHHHHHHHHHcCCcEEEECCCCCCCCCCChHHHHHHHHHHhccCceee
Confidence 58999999964310 0 01233333334445899988877521 1122333333322222 111222
Q ss_pred EE---EcCCCCcchHHHHHHHHHhcCCceEEEecCCCCC-CC-CcCCcHHHHHHHHHHhhhCCeEEEEeccCC-------
Q 019335 138 CC---LANPAEDVIGIKQLEQLILKDGFRAVRFNPYLWP-SG-QQMTNEVGKAMFSKAGELGVPVGFMCMKGL------- 205 (342)
Q Consensus 138 ~~---~i~p~~~~~~~~eler~~~~~g~~Gvk~~~~~~~-~g-~~l~~~~~~~~~~~a~e~~lpv~iH~~~~~------- 205 (342)
++ .+.... ....++++++. +.|+.|+|+....+. .+ ...++..+..++++++++|++|.+|+-+..
T Consensus 166 ~~~~~~~~~~~-~~~~~~l~~~~-~~G~~g~k~f~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~iH~E~~~l~~~~~~ 243 (505)
T PLN02795 166 VGFWGGLVPEN-AHNASVLEELL-DAGALGLKSFMCPSGINDFPMTTATHIKAALPVLAKYGRPLLVHAEVVSPVESDSR 243 (505)
T ss_pred eeceecccCcc-hhHHHHHHHHH-HCCCcEEEEEecccCCCCcccCCHHHHHHHHHHHHHhCCEEEEecCChhHhhhhhh
Confidence 21 121211 12456777763 679989986532110 01 134667899999999999999999986421
Q ss_pred ----C--------C--------CHHHHHHHHHhC------CCCcEEecccCCCCCCCCchhhHhHHHHhccc-CCCcEEE
Q 019335 206 ----N--------L--------HISEIEELCTEF------PSTTVLLDHLAFCKPPSNDEESLAFSNLLKLS-RFPQVYV 258 (342)
Q Consensus 206 ----~--------~--------~~~~l~~l~~~~------P~lk~vl~H~G~~~p~~~~~~~~~~~~~~~l~-~~~Nvy~ 258 (342)
. . .+..+..+++++ |+.++.+.|.... .+ ..+.+.+.. +.-+|++
T Consensus 244 ~~~~~~~~~~~~~~rP~~aE~~ai~~~~~la~~~~~~~~~~g~~lhi~HiSt~-----~~---~~e~i~~ak~~G~~Vt~ 315 (505)
T PLN02795 244 LDADPRSYSTYLKSRPPSWEQEAIRQLLEVAKDTRPGGVAEGAHVHIVHLSDA-----ES---SLELIKEAKAKGDSVTV 315 (505)
T ss_pred hhcCCcChhHhcccCCHHHHHHHHHHHHHHHHHhhhcccCCCCCEEEEECCCh-----HH---HHHHHHHHHHCCCcEEE
Confidence 0 0 112355667766 7899999999762 01 111122222 2236888
Q ss_pred ecCcccccc------c------CCCCCCCchhHHHHHHHhcCCCcE-EEccC-CCCCCCCC-----Ch----------Hh
Q 019335 259 KFSALFRVS------R------MPFPYQDLSSPLSQVVSSFGANRV-MWGSD-FPYVVPEC-----GY----------KG 309 (342)
Q Consensus 259 ~~S~~~~~~------~------~~~~~~~~~~~l~~~i~~~G~dRi-lfGSD-~P~~~~~~-----~~----------~~ 309 (342)
+++.-+... . ...|... ..--..+++.+--..| +.||| -|+...+. .+ +.
T Consensus 316 Ev~ph~L~l~~~~~~~~~~~~k~~PPLR~-~~d~~aL~~al~~G~Id~i~sDHap~~~~~K~~~~~~~~~a~~G~~gle~ 394 (505)
T PLN02795 316 ETCPHYLAFSAEEIPDGDTRYKCAPPIRD-AANRELLWKALLDGDIDMLSSDHSPSPPDLKLLEEGNFLRAWGGISSLQF 394 (505)
T ss_pred EeChhhhcccHHHccCCCCceEEcCCCCC-hHHHHHHHHHHhCCCceEEecCCCCCChHHhccCcCCHhhCCCCceeHHH
Confidence 886532210 0 0112222 1223344444421222 78999 57743221 11 11
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHhHHHHHhcC
Q 019335 310 GREAASLIANEVPLSPSELEWIMGGTIMQLFQ 341 (342)
Q Consensus 310 ~~~~~~~~~~~~~l~~~~~~~I~~~NA~rl~~ 341 (342)
.+..+.......+++.+..-+++..|..++|+
T Consensus 395 ~l~~~~~~~~~~~l~l~~~v~~~s~~pA~~~g 426 (505)
T PLN02795 395 VLPATWTAGRAYGLTLEQLARWWSERPAKLAG 426 (505)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhC
Confidence 22222211123578999999999999999996
No 40
>PRK09059 dihydroorotase; Validated
Probab=98.17 E-value=0.00056 Score=66.95 Aligned_cols=250 Identities=10% Similarity=0.024 Sum_probs=134.3
Q ss_pred CCeeeeeeeccCCCCccCCCCCCCCCCCCCCCCChHHHHHHhHHCCCceEEEeCCCCCccch----HHHHHHHHhC-CCc
Q 019335 60 VKIIDSHLHVWASPEEAADKFPYFPGQEPTLPGHVDFLLQCMEEASVDGALIVQPINHKFDH----SLVTSVLKKY-PSK 134 (342)
Q Consensus 60 ~~iID~H~Hl~~~~~~~~~~~p~~~~~~~~~~~~~~~ll~~md~~GI~~~v~~~~~~~~~~N----~~~~~~~~~~-p~r 134 (342)
.-.||+|+|+..+. .. ...+.+...+..-..||+..+.++......++ .+..+..+.. +-.
T Consensus 60 PG~ID~HvH~~~~~---------~~-----~~e~~~~~s~aa~~gGvTtv~~~p~~~p~~~~~~~~~~~~~~~~~~~~vd 125 (429)
T PRK09059 60 PGLVDARVFVGEPG---------AE-----HRETIASASRAAAAGGVTSIIMMPDTDPVIDDVALVEFVKRTARDTAIVN 125 (429)
T ss_pred ccEEecccccCCCC---------ch-----hhhhHHHHHHHHHhCCcEEEEeccCCCCCCCCHHHHHHHHHHhcccCccc
Confidence 36899999985321 00 12344555566778899999987632212222 2333333332 333
Q ss_pred EEEEEEcCCCCcchHHHHHHHHHhcCCceEEEecCCCCCCCCc-CCcHHHHHHHHHHhhhCCeEEEEeccCC--------
Q 019335 135 FVGCCLANPAEDVIGIKQLEQLILKDGFRAVRFNPYLWPSGQQ-MTNEVGKAMFSKAGELGVPVGFMCMKGL-------- 205 (342)
Q Consensus 135 ~~g~~~i~p~~~~~~~~eler~~~~~g~~Gvk~~~~~~~~g~~-l~~~~~~~~~~~a~e~~lpv~iH~~~~~-------- 205 (342)
|...+.+......+.++++..+ .+.|+++++.. +.. .++..+.+.++++.++|++|.+|+-+..
T Consensus 126 ~~~~~~~~~~~~~~~l~e~~~l-~~~Gv~~f~~~------~~~~~~~~~l~~~~~~~~~~~~~v~~H~E~~~l~~~~~~~ 198 (429)
T PRK09059 126 IHPAAAITKGLAGEEMTEFGLL-RAAGAVAFTDG------RRSVANTQVMRRALTYARDFDAVIVHETRDPDLGGNGVMN 198 (429)
T ss_pred EEEEeEEecCCCCcchHHHHHH-HhcCcEEEecC------CcccCCHHHHHHHHHHHHhcCCEEEEecCChhhhcCCCcC
Confidence 5444454443222245677776 46788888622 122 2455688999999999999999985321
Q ss_pred ----------CCC--------HHHHHHHHHhCCCCcEEecccCCCCCCCCchhhHhHHHHhccc-CCCcEEEecCccccc
Q 019335 206 ----------NLH--------ISEIEELCTEFPSTTVLLDHLAFCKPPSNDEESLAFSNLLKLS-RFPQVYVKFSALFRV 266 (342)
Q Consensus 206 ----------~~~--------~~~l~~l~~~~P~lk~vl~H~G~~~p~~~~~~~~~~~~~~~l~-~~~Nvy~~~S~~~~~ 266 (342)
... +..+..+++.+ +.++.+.|.... +. .+.+.... +.-+|+++++.-+..
T Consensus 199 ~~~~~~~~~~~~rP~~aE~~av~r~~~la~~~-~~~~hi~hvs~~------~~---~~~i~~ak~~g~~vt~ev~phhL~ 268 (429)
T PRK09059 199 EGLFASWLGLSGIPREAEVIPLERDLRLAALT-RGRYHAAQISCA------ES---AEALRRAKDRGLKVTAGVSINHLS 268 (429)
T ss_pred CcHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH-CCcEEEEecCCH------HH---HHHHHHHHHCCCCEEEeecHHHHh
Confidence 000 11234455544 789999999863 11 11121121 223688888754322
Q ss_pred cc------------CCCCCCCchhHHHHHHHhcCCCcE-EEccC-CCCCCCCC------------ChHhHHHHHHHHHhc
Q 019335 267 SR------------MPFPYQDLSSPLSQVVSSFGANRV-MWGSD-FPYVVPEC------------GYKGGREAASLIANE 320 (342)
Q Consensus 267 ~~------------~~~~~~~~~~~l~~~i~~~G~dRi-lfGSD-~P~~~~~~------------~~~~~~~~~~~~~~~ 320 (342)
.. ...|..+ ..--..+++.+-...| +++|| .|+...+. +.+..+..+......
T Consensus 269 l~~~~~~~~~~~~kvnPPLR~-~~d~~~L~~~l~~g~id~i~sDh~p~~~~~K~~~~~~~~~G~~gle~~l~~~~~~v~~ 347 (429)
T PRK09059 269 LNENDIGEYRTFFKLSPPLRT-EDDRVAMVEAVASGTIDIIVSSHDPQDVDTKRLPFSEAAAGAIGLETLLAAALRLYHN 347 (429)
T ss_pred ccHHHHhccCCccEEcCCCCC-HHHHHHHHHHHHcCCCcEEEeCCCCCCHHHCcCChhhCCCCcccHHHHHHHHHHHHHc
Confidence 10 0112221 1223344444422223 45576 57753221 111122222222233
Q ss_pred CCCCHHHHHHHHhHHHHHhcC
Q 019335 321 VPLSPSELEWIMGGTIMQLFQ 341 (342)
Q Consensus 321 ~~l~~~~~~~I~~~NA~rl~~ 341 (342)
..++-+..-++++.|..|+|+
T Consensus 348 ~~l~l~~~~~~~s~nPA~~~g 368 (429)
T PRK09059 348 GEVPLLRLIEALSTRPAEIFG 368 (429)
T ss_pred CCCCHHHHHHHHhHHHHHHhC
Confidence 468999999999999999996
No 41
>cd01301 rDP_like renal dipeptidase (rDP), best studied in mammals and also called membrane or microsomal dipeptidase, is a membrane-bound glycoprotein hydrolyzing dipeptides and is involved in hydrolytic metabolism of penem and carbapenem beta-lactam antibiotics. Although the biological function of the enzyme is still unknown, it has been suggested to play a role in the renal glutathione metabolism.
Probab=98.15 E-value=4.9e-05 Score=70.89 Aligned_cols=179 Identities=16% Similarity=0.154 Sum_probs=105.6
Q ss_pred HHHHHHHHHhcCCceEEEecCCC---CCCC------CcCCcHHHHHHHHHHhhhCCeEEE-EeccCCCCCHHHHHHHHHh
Q 019335 149 GIKQLEQLILKDGFRAVRFNPYL---WPSG------QQMTNEVGKAMFSKAGELGVPVGF-MCMKGLNLHISEIEELCTE 218 (342)
Q Consensus 149 ~~~eler~~~~~g~~Gvk~~~~~---~~~g------~~l~~~~~~~~~~~a~e~~lpv~i-H~~~~~~~~~~~l~~l~~~ 218 (342)
.++.|+.+ .+.|+|.+.+.-+. +.+| .-|. +.-+.+++.++++|+.|.+ |+. ...+.++++.
T Consensus 115 ~~~~l~~~-~~lGvR~i~Lt~n~~N~~a~g~~~~~~~GLt-~~G~~vv~~mn~lGmiiDvSH~s------~~~~~dv~~~ 186 (309)
T cd01301 115 DLALLRLL-YRLGVRYLGLTWNGDNKFADGCGEKRGGGLT-PFGKELVREMNRLGIIIDLSHLS------ERTFWDVLDI 186 (309)
T ss_pred CHHHHHHH-HHcCCeEEEeeecCCCccccCCCCCCCCCCC-HHHHHHHHHHHHcCCEEEcCCCC------HHHHHHHHHh
Confidence 45678777 57899888765221 1111 1122 5778999999999999954 333 2345666654
Q ss_pred CCCCcEEecccCCCCCCCCchhhHhHHHHhcccCCCcEEEecCccccccc--CCCCCCCchhHHHHHHHhcCCCcEEEcc
Q 019335 219 FPSTTVLLDHLAFCKPPSNDEESLAFSNLLKLSRFPQVYVKFSALFRVSR--MPFPYQDLSSPLSQVVSSFGANRVMWGS 296 (342)
Q Consensus 219 ~P~lk~vl~H~G~~~p~~~~~~~~~~~~~~~l~~~~Nvy~~~S~~~~~~~--~~~~~~~~~~~l~~~i~~~G~dRilfGS 296 (342)
. +..+|+.|.+...-.-..++.. =+.+..+++.. -.+.++....+-. .....+++...++++++.+|.|+|-+||
T Consensus 187 s-~~PviaSHsn~ral~~h~RNlt-D~~i~~ia~~G-Gvigi~~~~~fl~~~~~~~~~~~~~hi~~i~~l~G~dhVgiGs 263 (309)
T cd01301 187 S-NAPVIASHSNARALCDHPRNLT-DAQLKAIAETG-GVIGVNFYPAFLSPGADATLDDVVRHIDYIVDLIGIDHVGLGS 263 (309)
T ss_pred c-CCCEEEeccChHHhcCCCCCCC-HHHHHHHHHcC-CEEEEeeeHHHhCCCCCCCHHHHHHHHHHHHHhcCCCeEEECc
Confidence 4 4559999998622110011110 01233444433 2344433222111 1123445567788888899999999999
Q ss_pred CCCCCCCC----CChHhHHHHHHHHHhcCCCCHHHHHHHHhHHHHHh
Q 019335 297 DFPYVVPE----CGYKGGREAASLIANEVPLSPSELEWIMGGTIMQL 339 (342)
Q Consensus 297 D~P~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~I~~~NA~rl 339 (342)
||-..... .+........+++. ..++++++.++|+++|+.|+
T Consensus 264 Dfdg~~~~~~gl~~~~~~~~l~~~L~-~rG~s~~~i~~i~g~N~lRv 309 (309)
T cd01301 264 DFDGIGGTPGGLEDVSDLPNLTAELL-ERGYSEEEIEKIAGGNFLRV 309 (309)
T ss_pred ccCCCCCCccccCCHHHHHHHHHHHH-HcCCCHHHHHHHHhhchhcC
Confidence 98553211 12333334444444 47999999999999999875
No 42
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=98.13 E-value=0.0003 Score=66.52 Aligned_cols=171 Identities=13% Similarity=0.154 Sum_probs=92.8
Q ss_pred cchHHHHHHHHHhcCCceEEEecCCCC---C----CCCcCCcHHHHHHHHHHhhhCCeEEEEeccCCCCCHHHHHHHHHh
Q 019335 146 DVIGIKQLEQLILKDGFRAVRFNPYLW---P----SGQQMTNEVGKAMFSKAGELGVPVGFMCMKGLNLHISEIEELCTE 218 (342)
Q Consensus 146 ~~~~~~eler~~~~~g~~Gvk~~~~~~---~----~g~~l~~~~~~~~~~~a~e~~lpv~iH~~~~~~~~~~~l~~l~~~ 218 (342)
++++.+++++++ +.|...||+..... + ....++.+.+..+++.|.++|++|.+|+... ..+...++.
T Consensus 119 ~~~~~~~v~~~~-~~G~~~iK~~~~g~~~~~~~~~~~~~~~~e~l~~~~~~A~~~g~~v~~H~~~~-----~~i~~~l~~ 192 (342)
T cd01299 119 VEEVRAAVREQL-RRGADQIKIMATGGVLSPGDPPPDTQFSEEELRAIVDEAHKAGLYVAAHAYGA-----EAIRRAIRA 192 (342)
T ss_pred HHHHHHHHHHHH-HhCCCEEEEeccCCcCCCCCCCcccCcCHHHHHHHHHHHHHcCCEEEEEeCCH-----HHHHHHHHc
Confidence 445677888885 56999999875321 0 0124677899999999999999999998631 234444443
Q ss_pred CCCCcEEecccCCCCCCCCchhhHhHHHHhcccCCCcEEEecCccccc------ccCCCCCC----------CchhHHHH
Q 019335 219 FPSTTVLLDHLAFCKPPSNDEESLAFSNLLKLSRFPQVYVKFSALFRV------SRMPFPYQ----------DLSSPLSQ 282 (342)
Q Consensus 219 ~P~lk~vl~H~G~~~p~~~~~~~~~~~~~~~l~~~~Nvy~~~S~~~~~------~~~~~~~~----------~~~~~l~~ 282 (342)
+.. .+.|+.... . +.+..+++. ++++-.+..... ....|+.. .....++.
T Consensus 193 --G~~-~i~H~~~~~----~------~~~~~l~~~-g~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (342)
T cd01299 193 --GVD-TIEHGFLID----D------ETIELMKEK-GIFLVPTLATYEALAAEGAAPGLPADSAEKVALVLEAGRDALRR 258 (342)
T ss_pred --CCC-EEeecCCCC----H------HHHHHHHHC-CcEEeCcHHHHHHHHhhccccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 233 578987631 1 112233333 355444322110 00111100 00122334
Q ss_pred HHHhcCCCcEEEccCCCCCCCCCChHhHHHHHHHHHhcCCCCHHHHHHHHhHHHHHhcC
Q 019335 283 VVSSFGANRVMWGSDFPYVVPECGYKGGREAASLIANEVPLSPSELEWIMGGTIMQLFQ 341 (342)
Q Consensus 283 ~i~~~G~dRilfGSD~P~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~I~~~NA~rl~~ 341 (342)
+.+. |. +|.+|||+|..... . ......++.+. ..+++.++.-+....|+.++++
T Consensus 259 l~~~-Gv-~v~~GTD~~~~~~~-~-~~~~~e~~~~~-~~~~~~~~al~~~T~~~a~~~g 312 (342)
T cd01299 259 AHKA-GV-KIAFGTDAGFPVPP-H-GWNARELELLV-KAGGTPAEALRAATANAAELLG 312 (342)
T ss_pred HHHc-CC-eEEEecCCCCCCCc-h-hHHHHHHHHHH-HhCCCHHHHHHHHHHHHHHHhC
Confidence 4333 43 89999999851111 1 11122232222 3577877777777777777664
No 43
>TIGR01178 ade adenine deaminase. The family described by this model includes an experimentally characterized adenine deaminase of Bacillus subtilis. It also include a member from Methanobacterium thermoautotrophicum, in which adenine deaminase activity has been detected.
Probab=98.12 E-value=0.00043 Score=69.74 Aligned_cols=231 Identities=14% Similarity=0.050 Sum_probs=130.1
Q ss_pred CeeeeeeeccCCCCccCCCCCCCCCCCCCCCCChHHHHHHhHHCCCceEEEeCCCC---Ccc-chHHHHHHHHhCCCcEE
Q 019335 61 KIIDSHLHVWASPEEAADKFPYFPGQEPTLPGHVDFLLQCMEEASVDGALIVQPIN---HKF-DHSLVTSVLKKYPSKFV 136 (342)
Q Consensus 61 ~iID~H~Hl~~~~~~~~~~~p~~~~~~~~~~~~~~~ll~~md~~GI~~~v~~~~~~---~~~-~N~~~~~~~~~~p~r~~ 136 (342)
-.||+|+|+..+- .+.+++.+..-..|++..|..+-.. .+. .-+++.+.+++.|-+|.
T Consensus 51 G~ID~H~Hi~~~~------------------~~~~~~~~~al~~GvTtvv~~P~~~~~v~g~~~~~~~~~~a~~~~~d~~ 112 (552)
T TIGR01178 51 GFIDAHIHIESSM------------------LTPSEFAKLVLPHGVTTVVSDPHEIANVNGEDGINFMLNNAKKTPLNFY 112 (552)
T ss_pred CeEecccccCCCC------------------CChhHHHHHHHCCCEEEEEcCCCCCCCCCCHHHHHHHHHHhhcCCcEEE
Confidence 5899999996421 1233444555677998777643211 111 12456666666676664
Q ss_pred EEEE-cCCC---C-cch--HHHHHHHHHhcCCceEEEecCCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEEeccCCCCCH
Q 019335 137 GCCL-ANPA---E-DVI--GIKQLEQLILKDGFRAVRFNPYLWPSGQQMTNEVGKAMFSKAGELGVPVGFMCMKGLNLHI 209 (342)
Q Consensus 137 g~~~-i~p~---~-~~~--~~~eler~~~~~g~~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH~~~~~~~~~ 209 (342)
.... ..|. + ... ..+++++++++.|++|++....+ + +...+++.....++.+.++|.+|..|+.. ..-
T Consensus 113 ~~~~s~vp~~~~e~~g~~~~~~~i~~~~~~~~V~glke~m~~-~-~v~~~d~~~l~~i~~a~~~g~~I~gHap~---l~~ 187 (552)
T TIGR01178 113 FMLPSCVPALQFETSGAVLTAEDIDELMELDEVLGLAEVMDY-P-GVINADIEMLNKINSARKRNKVIDGHCPG---LSG 187 (552)
T ss_pred EECCCCCCCCcccCCCCccCHHHHHHHHcCCCccEEEEEecc-h-hhcCCCHHHHHHHHHHHhCCCEEEecCCC---CCH
Confidence 3321 1121 1 111 35789998888899999977543 2 33345666666668999999999999752 223
Q ss_pred HHHHHHHHhCCCCcEEecccCCCCCCCCchhhHhHHHHhcccCCCcEEEecCcccccccCCCCCCCchhHHHHHHHhcCC
Q 019335 210 SEIEELCTEFPSTTVLLDHLAFCKPPSNDEESLAFSNLLKLSRFPQVYVKFSALFRVSRMPFPYQDLSSPLSQVVSSFGA 289 (342)
Q Consensus 210 ~~l~~l~~~~P~lk~vl~H~G~~~p~~~~~~~~~~~~~~~l~~~~Nvy~~~S~~~~~~~~~~~~~~~~~~l~~~i~~~G~ 289 (342)
.++..++..- +..+|.+... .+.+++ + +. .+|+.+-.- +. ..++ +.+..++...+.
T Consensus 188 ~eL~~~~~aG----i~~dHe~~s~-------~ea~e~---~-~~-Gm~~~ir~g---s~----~~n~-~~~~~~~~~~~~ 243 (552)
T TIGR01178 188 KLLNKYISAG----ISNDHESTSI-------EEAREK---L-RL-GMKLMIREG---SA----AKNL-EALHPLINEKNC 243 (552)
T ss_pred HHHHHHHHcC----CCCCcCcCCH-------HHHHHH---H-HC-CCEEEEeCC---cc----ccCH-HHHHHHHhhcCC
Confidence 4555555433 3678977521 112222 2 12 245543211 00 0112 334444444467
Q ss_pred CcEEEccC--CCCCCCCCChHhHHHHHHHHHhcCCCCHHHHHHHHhHHHHHhcC
Q 019335 290 NRVMWGSD--FPYVVPECGYKGGREAASLIANEVPLSPSELEWIMGGTIMQLFQ 341 (342)
Q Consensus 290 dRilfGSD--~P~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~I~~~NA~rl~~ 341 (342)
.+++|+|| .|...... ......++... ..+++.++.=+....|+.+.|+
T Consensus 244 ~~~~l~TD~~~~~~~~~~--g~l~~~v~~ai-~~g~~~~~Al~maT~npA~~lg 294 (552)
T TIGR01178 244 RSLMLCTDDRHVNDILNE--GHINHIVRRAI-EHGVDPFDALQMASINPAEHFG 294 (552)
T ss_pred ceEEEEeCCCChhHHHhc--CCHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHcC
Confidence 89999999 23221110 11223343333 3578988888888999998885
No 44
>cd01318 DHOase_IIb Dihydroorotase (DHOase), subgroup IIb; DHOases catalyze the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in pyrimidine biosynthesis. This group contains the archeal members of the DHOase family.
Probab=98.10 E-value=0.00075 Score=64.56 Aligned_cols=244 Identities=14% Similarity=0.103 Sum_probs=125.0
Q ss_pred CeeeeeeeccCCCCccCCCCCCCCCCCCCCCCChHHHHHHhHHCCCceEEEeCCCCCccchHHHHHH-HHh-CCCcEE--
Q 019335 61 KIIDSHLHVWASPEEAADKFPYFPGQEPTLPGHVDFLLQCMEEASVDGALIVQPINHKFDHSLVTSV-LKK-YPSKFV-- 136 (342)
Q Consensus 61 ~iID~H~Hl~~~~~~~~~~~p~~~~~~~~~~~~~~~ll~~md~~GI~~~v~~~~~~~~~~N~~~~~~-~~~-~p~r~~-- 136 (342)
-.||.|+|+-.+. +. ...+.+..-+..-.-||+..+.++...-..++...++. .+. .+.-.+
T Consensus 7 G~iD~HvH~r~pg------~~--------~~ed~~s~t~aA~~GGvTtv~~mPnt~P~~~~~~~~~~~~~~a~~~~~vd~ 72 (361)
T cd01318 7 GVIDIHVHFREPG------LT--------YKEDFVSGSRAAAAGGVTTVMDMPNTKPPTTTAEALYEKLRLAAAKSVVDY 72 (361)
T ss_pred CeeEeeecCCCCC------CC--------ccCcHHHHHHHHHcCCCEEEEECCCCCCCCCcHHHHHHHHHHhccCceeEE
Confidence 4799999996431 10 12344444445556799999888632212233222222 111 121111
Q ss_pred E-EEEcCCCCcchHHHHHHHHHhcCCceEEEecCCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEEeccCC----------
Q 019335 137 G-CCLANPAEDVIGIKQLEQLILKDGFRAVRFNPYLWPSGQQMTNEVGKAMFSKAGELGVPVGFMCMKGL---------- 205 (342)
Q Consensus 137 g-~~~i~p~~~~~~~~eler~~~~~g~~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH~~~~~---------- 205 (342)
+ .+.+.+. ++++++ .+.|..|+|............++..+.+.++.+. .+|.+|+-+..
T Consensus 73 ~~~~~~~~~------~~l~~~-~~~~~~g~k~f~~~~~~~~~~~~~~l~~~~~~~~---~~v~~H~E~~~l~~~~~~~~~ 142 (361)
T cd01318 73 GLYFGVTGS------EDLEEL-DKAPPAGYKIFMGDSTGDLLDDEETLERIFAEGS---VLVTFHAEDEDRLRENRKELK 142 (361)
T ss_pred EEEEeecCh------hhHHHH-HHhhCcEEEEEEecCCCCcCCCHHHHHHHHHhcC---CeEEEeCCChHHHHHHHhhhh
Confidence 2 2233332 244444 3457788886543111112256777888887774 88999986420
Q ss_pred ------CCC--------HHHHHHHHHhCCCCcEEecccCCCCCCCCchhhHhHHHHhcccCCCcEEEecCccccccc---
Q 019335 206 ------NLH--------ISEIEELCTEFPSTTVLLDHLAFCKPPSNDEESLAFSNLLKLSRFPQVYVKFSALFRVSR--- 268 (342)
Q Consensus 206 ------~~~--------~~~l~~l~~~~P~lk~vl~H~G~~~p~~~~~~~~~~~~~~~l~~~~Nvy~~~S~~~~~~~--- 268 (342)
... +.....+++. .+.++.+.|.... + ..+.+.+ ++ .+|+++++..+....
T Consensus 143 ~~~~~~~~~P~~aE~~av~r~~~la~~-~~~~~hi~Hvs~~------~---~~~~i~~-~k-~~vt~ev~ph~L~l~~~~ 210 (361)
T cd01318 143 GESAHPRIRDAEAAAVATARALKLARR-HGARLHICHVSTP------E---ELKLIKK-AK-PGVTVEVTPHHLFLDVED 210 (361)
T ss_pred hccCCCCcCCHHHHHHHHHHHHHHHHH-HCCCEEEEeCCCH------H---HHHHHHH-hC-CCeEEEeCHHHhhcCHHH
Confidence 000 1133445554 5799999999863 1 1111211 12 468888775432110
Q ss_pred ---------CCCCCCCchhHHHHHHHhcC-CCcEEEccC-CCCCCCCC------------ChHhHHHHHHHHHhcCCCCH
Q 019335 269 ---------MPFPYQDLSSPLSQVVSSFG-ANRVMWGSD-FPYVVPEC------------GYKGGREAASLIANEVPLSP 325 (342)
Q Consensus 269 ---------~~~~~~~~~~~l~~~i~~~G-~dRilfGSD-~P~~~~~~------------~~~~~~~~~~~~~~~~~l~~ 325 (342)
..+|.... .-...+++.+- -...++||| .|+...+. +.+.....+..+.+..+++.
T Consensus 211 ~~~~~~~~k~~PPlr~~-~d~~aL~~~l~~G~id~i~SDh~P~~~~~k~~~~~~a~~G~~g~e~~l~~~~~~v~~~~l~l 289 (361)
T cd01318 211 YDRLGTLGKVNPPLRSR-EDRKALLQALADGRIDVIASDHAPHTLEEKRKGYPAAPSGIPGVETALPLMLTLVNKGILSL 289 (361)
T ss_pred HhcCCCeEEEeCCCCCH-HHHHHHHHHHhCCCCCEEeeCCCCCCHHHccCChhhCCCCCccHHHHHHHHHHHHHcCCCCH
Confidence 01122211 22233333331 123489999 78854211 11111222222333457899
Q ss_pred HHHHHHHhHHHHHhcC
Q 019335 326 SELEWIMGGTIMQLFQ 341 (342)
Q Consensus 326 ~~~~~I~~~NA~rl~~ 341 (342)
++.-+.+..|..++|+
T Consensus 290 ~~a~~~~t~nPA~~lg 305 (361)
T cd01318 290 SRVVRLTSHNPARIFG 305 (361)
T ss_pred HHHHHHHhHHHHHHhC
Confidence 9999999999999985
No 45
>PF02126 PTE: Phosphotriesterase family; InterPro: IPR001559 Synonym(s): Paraoxonase, A-esterase, Aryltriphosphatase, Phosphotriesterase, Paraoxon hydrolase Bacteria such as Brevundimonas diminuta (Pseudomonas diminuta) harbour a plasmid that carries the gene for Aryldialkylphosphatase (3.1.8.1 from EC) (PTE) (also known as parathion hydrolase). This enzyme has attracted interest because of its potential use in the detoxification of chemical waste and warfare agents and its ability to degrade agricultural pesticides such as parathion. It acts specifically on synthetic organophosphate triesters and phosphorofluoridates. It does not seem to have a natural occuring substrate and may thus have optimally evolved for utilizing paraoxon. Aryldialkylphosphatase belongs to a family [, ] of enzymes that possess a binuclear zinc metal centre at their active site. The two zinc ions are coordinated by six different residues, six of which being histidines. This family so far includes, in addition to the parathion hydrolase, the following proteins: Escherichia coli protein Php, the substrate of which is not yet known. Mycobacterium tuberculosis phosphotriesterase homology protein Rv0230C. Mammalian phosphotriesterase related protein (PTER) (RPR-1). ; GO: 0008270 zinc ion binding, 0016788 hydrolase activity, acting on ester bonds, 0009056 catabolic process; PDB: 3MSR_A 3OVG_D 3K2G_C 1BF6_B 3OQE_A 3C86_A 3SO7_A 2D2G_A 2R1P_A 2D2H_A ....
Probab=98.09 E-value=0.00016 Score=67.42 Aligned_cols=262 Identities=15% Similarity=0.140 Sum_probs=133.7
Q ss_pred CCCCeeeeeeeccCCCCccCCCCCCCCCCCCCCCC----ChHHH---HHHhHHCCCceEEEeCCCCCccchHHHHHHHHh
Q 019335 58 SKVKIIDSHLHVWASPEEAADKFPYFPGQEPTLPG----HVDFL---LQCMEEASVDGALIVQPINHKFDHSLVTSVLKK 130 (342)
Q Consensus 58 ~~~~iID~H~Hl~~~~~~~~~~~p~~~~~~~~~~~----~~~~l---l~~md~~GI~~~v~~~~~~~~~~N~~~~~~~~~ 130 (342)
..+-+..+|=|+... ++......+.... +.+.. ++.++++|+...|=+.+...+-+-..+.++.++
T Consensus 4 e~LG~tl~HEHl~~d-------~~~~~~~~~~~~~~~~~~~~~~~~El~~~k~~Gg~tiVd~T~~g~GRd~~~l~~is~~ 76 (308)
T PF02126_consen 4 EELGFTLMHEHLLID-------LSGFYKDPDEALDDRDEDVEAAVAELKEFKAAGGRTIVDATPIGLGRDVEALREISRR 76 (308)
T ss_dssp GGCSSEEEEEESEEE-------TTTHHHHTGGGGCGHHHHHHHHHHHHHHHHHTTEEEEEE--SGGGTB-HHHHHHHHHH
T ss_pred HHCCCeecccCeeec-------ChhhccCCCcchhhhhhhHHHHHHHHHHHHHcCCCEEEecCCcccCcCHHHHHHHHHH
Confidence 345678999999742 2111000000112 22333 446778999887777665667777888888887
Q ss_pred CCCcEEEEEEcC--CCCcc----hHHHHHHHHH-h--cCCceE-------EEecCCCCCCCCcC---CcHHHHHHHHHHh
Q 019335 131 YPSKFVGCCLAN--PAEDV----IGIKQLEQLI-L--KDGFRA-------VRFNPYLWPSGQQM---TNEVGKAMFSKAG 191 (342)
Q Consensus 131 ~p~r~~g~~~i~--p~~~~----~~~~eler~~-~--~~g~~G-------vk~~~~~~~~g~~l---~~~~~~~~~~~a~ 191 (342)
..=.++....+. +..|+ ..+++|.+.. + +.|+-| ||.... ...+ ....++..-.+..
T Consensus 77 tGv~II~~TG~y~~~~~p~~~~~~s~e~la~~~i~Ei~~GidgT~ikaG~Ik~~~~----~~~it~~E~k~lrAaa~A~~ 152 (308)
T PF02126_consen 77 TGVNIIASTGFYKEPFYPEWVREASVEELADLFIREIEEGIDGTGIKAGIIKEIGS----SNPITPLEEKVLRAAARAHK 152 (308)
T ss_dssp HT-EEEEEEEE-SGGCSCHHHHTSHHHHHHHHHHHHHHT-STTSSB-ESEEEEEEB----TTBCEHHHHHHHHHHHHHHH
T ss_pred hCCeEEEeCCCCccccCChhhhcCCHHHHHHHHHHHHHhcCCCCccchhheeEeec----cCCCCHHHHHHHHHHHHHHH
Confidence 653455443332 22221 1233443322 1 123221 222221 1222 2345666666677
Q ss_pred hhCCeEEEEeccCCCCCHHHHHHHHHhC--CCCcEEecccCCCCCCCCchhhHhHHHHhcccCCCcEEEecCcccc-ccc
Q 019335 192 ELGVPVGFMCMKGLNLHISEIEELCTEF--PSTTVLLDHLAFCKPPSNDEESLAFSNLLKLSRFPQVYVKFSALFR-VSR 268 (342)
Q Consensus 192 e~~lpv~iH~~~~~~~~~~~l~~l~~~~--P~lk~vl~H~G~~~p~~~~~~~~~~~~~~~l~~~~Nvy~~~S~~~~-~~~ 268 (342)
+.|+||.+|+..+. ....+..+++++. +--|+|++|+... +. ..-+.++++.+ +|+.+-.+-. .+.
T Consensus 153 ~TG~pI~~H~~~g~-~~~~e~~~il~e~Gv~~~rvvigH~D~~-~D--------~~y~~~la~~G-~~l~~D~~g~~~~g 221 (308)
T PF02126_consen 153 ETGAPISTHTGRGT-RMGLEQLDILEEEGVDPSRVVIGHMDRN-PD--------LDYHRELADRG-VYLEFDTIGREFSG 221 (308)
T ss_dssp HHT-EEEEEESTTG-TCHHHHHHHHHHTT--GGGEEETSGGGS-T---------HHHHHHHHHTT--EEEETTTT-B-TT
T ss_pred HhCCeEEEcCCCCC-cCHHHHHHHHHHcCCChhHeEEeCCCCC-CC--------HHHHHHHHhcC-CEEEecCCcccccC
Confidence 79999999997542 1344556666665 3468999999852 21 11234455553 7777765411 111
Q ss_pred CCC----CCCC---chhHHHHHHHhcCCCcEEEccCCCCC--C--CC-CChH--hHHHHHHHHHhcCCCCHHHHHHHHhH
Q 019335 269 MPF----PYQD---LSSPLSQVVSSFGANRVMWGSDFPYV--V--PE-CGYK--GGREAASLIANEVPLSPSELEWIMGG 334 (342)
Q Consensus 269 ~~~----~~~~---~~~~l~~~i~~~G~dRilfGSD~P~~--~--~~-~~~~--~~~~~~~~~~~~~~l~~~~~~~I~~~ 334 (342)
... .+.. -...+..+++.==.||||.|.|.-.. . .. ..|. .+.+.+.-.++..++++++.++|+-+
T Consensus 222 ~~~~~~~~~~~d~~ri~~l~~L~~~Gy~~qIlLS~D~~~k~~~~~~gg~g~~~~~i~~~fiP~L~~~Gv~~~~i~~ilv~ 301 (308)
T PF02126_consen 222 KDKNPRVGYPPDEERIELLKELIEEGYADQILLSHDIGRKSRLYRYGGGGYGYIYILTRFIPRLKERGVSEEDIDKILVE 301 (308)
T ss_dssp TTTCHSCTTS-HHHHHHHHHHHHHTTTGGGEEE-HHHESEEGSSSCCHHHHTTTHHHHTHHHHHHHTTS-HHHHHHHHTH
T ss_pred cccCccCCCCCHHHHHHHHHHHHHcCCcCcEEEeccccccccccccCCCCccHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 000 1111 12456666666227899999995441 1 11 1121 12222323334579999999999999
Q ss_pred HHHHhcC
Q 019335 335 TIMQLFQ 341 (342)
Q Consensus 335 NA~rl~~ 341 (342)
|.+|+|.
T Consensus 302 NP~r~lt 308 (308)
T PF02126_consen 302 NPARILT 308 (308)
T ss_dssp HHHHHHS
T ss_pred CHHHHcC
Confidence 9999983
No 46
>PLN02942 dihydropyrimidinase
Probab=98.09 E-value=0.0021 Score=63.96 Aligned_cols=255 Identities=11% Similarity=0.064 Sum_probs=130.1
Q ss_pred CeeeeeeeccCCCCccCCCCCCCCCCCCCCCCChHHHHHHhHHCCCceEEEeCCCCCccc----hHHHHHHHHhCCCcEE
Q 019335 61 KIIDSHLHVWASPEEAADKFPYFPGQEPTLPGHVDFLLQCMEEASVDGALIVQPINHKFD----HSLVTSVLKKYPSKFV 136 (342)
Q Consensus 61 ~iID~H~Hl~~~~~~~~~~~p~~~~~~~~~~~~~~~ll~~md~~GI~~~v~~~~~~~~~~----N~~~~~~~~~~p~r~~ 136 (342)
-.||+|+|++.+- .... ...+...--..+-..||+..+-+.. ..... -+.+.+..++.+-.+.
T Consensus 58 G~ID~H~H~~~~~---------~~~~---~~ed~~s~s~aAl~gGvTTv~D~~~-~~~~~~~~~~~~~~~~~~~~~~d~~ 124 (486)
T PLN02942 58 GGIDPHTHLAMPF---------MGTE---TIDDFFSGQAAALAGGTTMHIDFVI-PVNGNLLAGYEAYEKKAEKSCMDYG 124 (486)
T ss_pred CEeeeeeccCccc---------CCCc---ccchHHHHHHHHHcCCCeEEEeCCC-CCCCCHHHHHHHHHHHHhhcCCCEE
Confidence 5899999997531 0000 0111212222345679988876531 11111 1223333333332222
Q ss_pred EEEEcCCCCcchHHHHHHHHHhcCCceEEEecCCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEEeccC------------
Q 019335 137 GCCLANPAEDVIGIKQLEQLILKDGFRAVRFNPYLWPSGQQMTNEVGKAMFSKAGELGVPVGFMCMKG------------ 204 (342)
Q Consensus 137 g~~~i~p~~~~~~~~eler~~~~~g~~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH~~~~------------ 204 (342)
....+.+.+. ...++++++++..|+.|+++.... ......+++.+...+++++++|++|.+|+-+.
T Consensus 125 ~~~~~~~~~~-~~~~e~~~l~~~~gv~~~k~~~~~-~~~~~~~~~~l~~~~~~a~~~~~~v~~HaE~~~~~~~~~~~~~~ 202 (486)
T PLN02942 125 FHMAITKWDD-TVSRDMETLVKEKGINSFKFFMAY-KGSLMVTDELLLEGFKRCKSLGALAMVHAENGDAVFEGQKRMIE 202 (486)
T ss_pred EEEEecCCcH-hHHHHHHHHHHhCCCceEEEEEec-CCCCCCCHHHHHHHHHHHHhcCCeEEEEcCCHHHHHHHHHHHHH
Confidence 2223333322 235678887666788888876432 11234567899999999999999999996421
Q ss_pred --C----------CCC-----HHHHHHHHHhCCCCcEEecccCCCCCCCCchhhHhHHHHhcccC-CCcEEEecCccccc
Q 019335 205 --L----------NLH-----ISEIEELCTEFPSTTVLLDHLAFCKPPSNDEESLAFSNLLKLSR-FPQVYVKFSALFRV 266 (342)
Q Consensus 205 --~----------~~~-----~~~l~~l~~~~P~lk~vl~H~G~~~p~~~~~~~~~~~~~~~l~~-~~Nvy~~~S~~~~~ 266 (342)
. |.. +..+..+++.+ +.++.+.|+... + ..+.+..+.+ .-+|..+++.-+..
T Consensus 203 ~G~~~~~~~~~~rP~~~E~~av~~~~~la~~~-g~~~~i~H~s~~------~---~~e~i~~~k~~G~~Vt~e~~ph~L~ 272 (486)
T PLN02942 203 LGITGPEGHALSRPPLLEGEATARAIRLAKFV-NTPLYVVHVMSI------D---AMEEIARARKSGQRVIGEPVVSGLV 272 (486)
T ss_pred cCCCChhhhhccCCchHHHHHHHHHHHHHHHh-CCCEEEEECCCH------H---HHHHHHHHHHCCCcEEEEECchhhe
Confidence 0 000 11223344444 688999999863 1 1122222322 23577777642211
Q ss_pred cc------------C----CCCCCCchhHHHHHHHhcC-CCcEEEccC-CCCCCCCCC-----h----------HhHHH-
Q 019335 267 SR------------M----PFPYQDLSSPLSQVVSSFG-ANRVMWGSD-FPYVVPECG-----Y----------KGGRE- 312 (342)
Q Consensus 267 ~~------------~----~~~~~~~~~~l~~~i~~~G-~dRilfGSD-~P~~~~~~~-----~----------~~~~~- 312 (342)
.. . ..|... ......+.+.+- --...+||| .|+...... + +..+.
T Consensus 273 l~~~~~~~~~~~~~~~~k~~PPlr~-~~~~~~L~~~l~~G~i~~igTDh~p~~~~~k~~~~~~~~~~~~G~~g~e~~l~~ 351 (486)
T PLN02942 273 LDDSKLWDPDFTIASKYVMSPPIRP-AGHGKALQAALSSGILQLVGTDHCPFNSTQKAFGKDDFRKIPNGVNGIEERMHL 351 (486)
T ss_pred eCHHHhcCcccccCcceEECCCCCC-HHHHHHHHHHhcCCceEEEECCCCCCChHHhhcccCCHhhCCCCcccHHHHHHH
Confidence 00 0 113222 122233333331 137789999 566432110 0 11111
Q ss_pred HHHHHHhcCCCCHHHHHHHHhHHHHHhcC
Q 019335 313 AASLIANEVPLSPSELEWIMGGTIMQLFQ 341 (342)
Q Consensus 313 ~~~~~~~~~~l~~~~~~~I~~~NA~rl~~ 341 (342)
.+..+.+...++.++.-+++..|..++|+
T Consensus 352 ~~~~~~~~~~i~~~~~l~~~t~~pA~~lg 380 (486)
T PLN02942 352 VWDTMVESGQISPTDYVRVTSTECAKIFN 380 (486)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHhC
Confidence 11122223358999999999999999986
No 47
>PRK09357 pyrC dihydroorotase; Validated
Probab=98.07 E-value=0.0014 Score=63.94 Aligned_cols=249 Identities=10% Similarity=0.016 Sum_probs=129.2
Q ss_pred CeeeeeeeccCCCCccCCCCCCCCCCCCCCCCChHHHHHHhHHCCCceEEEeCCCCCccch-HH---HHHHHHhCC-CcE
Q 019335 61 KIIDSHLHVWASPEEAADKFPYFPGQEPTLPGHVDFLLQCMEEASVDGALIVQPINHKFDH-SL---VTSVLKKYP-SKF 135 (342)
Q Consensus 61 ~iID~H~Hl~~~~~~~~~~~p~~~~~~~~~~~~~~~ll~~md~~GI~~~v~~~~~~~~~~N-~~---~~~~~~~~p-~r~ 135 (342)
-.||+|+|+..+.. ....+....-+..-..||+..+.+.......++ +. ..+..+... -.+
T Consensus 54 G~ID~H~H~~~~~~--------------~~~e~~~~~~~~a~~~GvTt~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 119 (423)
T PRK09357 54 GLVDLHVHLREPGQ--------------EDKETIETGSRAAAAGGFTTVVAMPNTKPVIDTPEVVEYVLDRAKEAGLVDV 119 (423)
T ss_pred CEEecccccCCCCc--------------cccccHHHHHHHHHhCCCeEEEecCCCCCCCCcHHHHHHHHHHhccCCcccE
Confidence 58999999853210 011233333344457899988876522111111 22 233333332 123
Q ss_pred EEEEEcCCCCcchHHHHHHHHHhcCCceEEEecCCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEEeccCC----------
Q 019335 136 VGCCLANPAEDVIGIKQLEQLILKDGFRAVRFNPYLWPSGQQMTNEVGKAMFSKAGELGVPVGFMCMKGL---------- 205 (342)
Q Consensus 136 ~g~~~i~p~~~~~~~~eler~~~~~g~~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH~~~~~---------- 205 (342)
.+.+.+........+++++++. +.|+++++.+.. ...+++.+...++.|+++|+++.+|+.+..
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~l~-~~gv~~~~~~~~-----~~~~~~~l~~~~~~a~~~g~~v~iH~ee~~~~~~~~~~~g 193 (423)
T PRK09357 120 LPVGAITKGLAGEELTEFGALK-EAGVVAFSDDGI-----PVQDARLMRRALEYAKALDLLIAQHCEDPSLTEGGVMNEG 193 (423)
T ss_pred EEEEEEEeCCCCccHHHHHHHH-hCCcEEEECCCc-----ccCCHHHHHHHHHHHHhcCCEEEEeCCCHHHhhcccccCC
Confidence 3444443222222456777664 468877764421 223567889999999999999999986421
Q ss_pred --------CC--------CHHHHHHHHHhCCCCcEEecccCCCCCCCCchhhHhHHHHhccc-CCCcEEEecCcccccc-
Q 019335 206 --------NL--------HISEIEELCTEFPSTTVLLDHLAFCKPPSNDEESLAFSNLLKLS-RFPQVYVKFSALFRVS- 267 (342)
Q Consensus 206 --------~~--------~~~~l~~l~~~~P~lk~vl~H~G~~~p~~~~~~~~~~~~~~~l~-~~~Nvy~~~S~~~~~~- 267 (342)
.. .+..+..+++.++ .++.+.|..... ..+.+.... +.-+++++++..+.+.
T Consensus 194 ~~~~~~~~~~~p~~~E~~~i~~~~~la~~~g-~~~hi~H~s~~~---------~~~~i~~a~~~g~~v~~e~~ph~L~~~ 263 (423)
T PRK09357 194 EVSARLGLPGIPAVAEEVMIARDVLLAEATG-ARVHICHVSTAG---------SVELIRWAKALGIKVTAEVTPHHLLLT 263 (423)
T ss_pred hhhHHhCCCCCCHHHHHHHHHHHHHHHHHHC-CcEEEEeCCCHH---------HHHHHHHHHHcCCCEEEEechHHheEc
Confidence 00 0123455667775 999999998631 111111111 2235777766532210
Q ss_pred -------cC----CCCCCC--chhHHHHHHHhcCCCcEEEccCCCCCCCCC---Ch----------HhHHHH-HHHHHhc
Q 019335 268 -------RM----PFPYQD--LSSPLSQVVSSFGANRVMWGSDFPYVVPEC---GY----------KGGREA-ASLIANE 320 (342)
Q Consensus 268 -------~~----~~~~~~--~~~~l~~~i~~~G~dRilfGSD~P~~~~~~---~~----------~~~~~~-~~~~~~~ 320 (342)
.. ..|... ....+.++++. | .-..+|||++...... ++ ...+.. +..+...
T Consensus 264 ~~~~~~~~~~~k~~Pplr~~~~~~~l~~~l~~-G-~~~~i~sDh~p~~~~~k~~~~~~~~~G~~g~e~~~~~~~~~~~~~ 341 (423)
T PRK09357 264 DEDLLTYDPNYKVNPPLRTEEDREALIEGLKD-G-TIDAIATDHAPHAREEKECEFEAAPFGITGLETALSLLYTTLVKT 341 (423)
T ss_pred HHHHhCcCCceEECCCCCCHHHHHHHHHHHHc-C-CCeEEecCCCCCChHHccCCHhhCCCCceEHHHHHHHHHHHHHHc
Confidence 00 112211 12234444443 3 2448999975433210 01 111111 1112223
Q ss_pred CCCCHHHHHHHHhHHHHHhcC
Q 019335 321 VPLSPSELEWIMGGTIMQLFQ 341 (342)
Q Consensus 321 ~~l~~~~~~~I~~~NA~rl~~ 341 (342)
..++.++.-+++..|+.++|+
T Consensus 342 ~~~~~~~~~~~~t~~~A~~~g 362 (423)
T PRK09357 342 GLLDLEQLLEKMTINPARILG 362 (423)
T ss_pred CCCCHHHHHHHHhHHHHHHhC
Confidence 468999999999999999986
No 48
>PRK10657 isoaspartyl dipeptidase; Provisional
Probab=98.06 E-value=0.00065 Score=65.49 Aligned_cols=254 Identities=14% Similarity=0.046 Sum_probs=123.8
Q ss_pred CeeeeeeeccCCCCccCCCCCCCCCCCCCCCCChHHHHHHhHHCCCceEEEeCCC-CCccchHHHHHHHHhCCC---cEE
Q 019335 61 KIIDSHLHVWASPEEAADKFPYFPGQEPTLPGHVDFLLQCMEEASVDGALIVQPI-NHKFDHSLVTSVLKKYPS---KFV 136 (342)
Q Consensus 61 ~iID~H~Hl~~~~~~~~~~~p~~~~~~~~~~~~~~~ll~~md~~GI~~~v~~~~~-~~~~~N~~~~~~~~~~p~---r~~ 136 (342)
-.||+|+|+... ... .+. ...+.+...+.+-..|++..|-+... ....+.+++.+..+..++ |.+
T Consensus 57 G~id~H~H~~~~-------~~~-~~~---~~~t~~~~~~~~~~~GvTTvvd~~~~~~~~~~~~~~~~~~~~~~~~Gv~~~ 125 (388)
T PRK10657 57 GFIDQHVHIIGG-------GGE-GGF---STRTPEVQLSDLTEAGITTVVGLLGTDGITRSMESLLAKARALEEEGISAY 125 (388)
T ss_pred cceeeeeCcccC-------CCC-ccc---ccCCHHHHHHHHHhCCceEEECCCCCCCCCCCHHHHHHHHHHHHhhCCEEE
Confidence 589999999621 000 000 12366677788888999888865421 122234455554443331 333
Q ss_pred EEEE-cC-CC--CcchHHHHHHHHHhcCCceEE-EecCCCCCCCCcCCcHHHHHHHHHHhhhCC------eEEEEeccCC
Q 019335 137 GCCL-AN-PA--EDVIGIKQLEQLILKDGFRAV-RFNPYLWPSGQQMTNEVGKAMFSKAGELGV------PVGFMCMKGL 205 (342)
Q Consensus 137 g~~~-i~-p~--~~~~~~~eler~~~~~g~~Gv-k~~~~~~~~g~~l~~~~~~~~~~~a~e~~l------pv~iH~~~~~ 205 (342)
.+.. .+ |. ..+...+++ .. ...+.|+ +.....+. ....+...+..+-+.++..+. ++.+|+..+
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~g~g~~~~~~~~-~~~~~~~~l~~~~~~a~~~~~~~g~~~~i~vH~~~~- 200 (388)
T PRK10657 126 MYTGSYHVPVRTITGSIRKDI-VL--IDKVIGVGEIAISDHR-SSQPTVEELARLAAEARVGGLLSGKAGIVHVHMGDG- 200 (388)
T ss_pred EEecCCCCCchhhhcchhhce-eh--hhhhhCcceeeeccCC-CCCCCHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCc-
Confidence 2211 11 11 011111222 11 1123343 33222111 123356677777777776555 899998732
Q ss_pred CCCHHHHHHHHHhC--CCCcEEecccCCCCCCCCchhhHhHHHHhcccCCC-cEEEecCcccccccCCCCCCCchhHHHH
Q 019335 206 NLHISEIEELCTEF--PSTTVLLDHLAFCKPPSNDEESLAFSNLLKLSRFP-QVYVKFSALFRVSRMPFPYQDLSSPLSQ 282 (342)
Q Consensus 206 ~~~~~~l~~l~~~~--P~lk~vl~H~G~~~p~~~~~~~~~~~~~~~l~~~~-Nvy~~~S~~~~~~~~~~~~~~~~~~l~~ 282 (342)
...+..+.+++++- ..-+++..|+... ... .++..++.+.. .+-++.++..... ...... .+.+..
T Consensus 201 ~~~l~~v~~~l~~~Gv~~~~~~~~H~~~~-----~~~---~~~~~~~~~~G~~~~v~~~~~~~~~--~~~~~~-~~~l~~ 269 (388)
T PRK10657 201 KKGLQPLFELLENTDIPISQFLPTHVNRN-----EPL---FEQALEFAKKGGVIDLTTSDPDFLG--EGEVAP-AEALKR 269 (388)
T ss_pred hHHHHHHHHHHHhcCCCcceeeCcccCCC-----HHH---HHHHHHHHHcCCeEEEecCCCcccc--cCccCH-HHHHHH
Confidence 23344554444332 2234677887641 111 11222222222 2223422111000 001111 244666
Q ss_pred HHHhc-CCCcEEEccCCCCCCCC------------CChHhHHHHHHHHHhcCCCCHHHHHHHHhHHHHHhcC
Q 019335 283 VVSSF-GANRVMWGSDFPYVVPE------------CGYKGGREAASLIANEVPLSPSELEWIMGGTIMQLFQ 341 (342)
Q Consensus 283 ~i~~~-G~dRilfGSD~P~~~~~------------~~~~~~~~~~~~~~~~~~l~~~~~~~I~~~NA~rl~~ 341 (342)
+++.- +.||+++|||.....+. .++......+.......+++.++.-++...|..++|+
T Consensus 270 ~~~~G~~~d~v~l~tD~~~~~~~~~~~g~~~~~g~~~~~~l~~~~~~~~~~~gis~~~~l~~aT~npA~~lg 341 (388)
T PRK10657 270 ALEAGVPLSRVTLSSDGNGSLPKFDEDGNLVGLGVGSVESLLEEVRELVKDEGLPLEDALKPLTSNVARFLK 341 (388)
T ss_pred HHHcCCChhheEEECCCCCCCceeccCCCEeccCcCchhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhC
Confidence 66663 26899999995321110 1233344445444434689999999999999999986
No 49
>PRK12394 putative metallo-dependent hydrolase; Provisional
Probab=98.06 E-value=0.0014 Score=62.99 Aligned_cols=175 Identities=13% Similarity=0.086 Sum_probs=95.1
Q ss_pred HHHHHHHHhc--CCceEEEecCCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEEeccCCCCCHHHHHHHHHhCCCCcEEec
Q 019335 150 IKQLEQLILK--DGFRAVRFNPYLWPSGQQMTNEVGKAMFSKAGELGVPVGFMCMKGLNLHISEIEELCTEFPSTTVLLD 227 (342)
Q Consensus 150 ~~eler~~~~--~g~~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH~~~~~~~~~~~l~~l~~~~P~lk~vl~ 227 (342)
.++++++++. .+..|+|+.....+. ....++.+....+.|+++|+|+.+|+.+.. ....++.+++. ++ .+++
T Consensus 141 ~~~~~~~~~~~~~~~~g~ki~~~~~~~-~~~~~~~l~~~~~~A~~~g~~v~iH~~e~~-~~~~~~~~~l~--~g--~~~~ 214 (379)
T PRK12394 141 ENKIHALFRQYRNVLQGLKLRVQTEDI-AEYGLKPLTETLRIANDLRCPVAVHSTHPV-LPMKELVSLLR--RG--DIIA 214 (379)
T ss_pred HHHHHHHHHHCcCcEEEEEEEEecccc-cccchHHHHHHHHHHHHcCCCEEEEeCCCC-ccHHHHHHhcC--CC--CEEE
Confidence 3566666543 567787755321111 145678899999999999999999997531 22233333333 23 3678
Q ss_pred ccCCCCCCCC-chhhHhHHHHhcccCCCcEEEecCcccccccCCCCCCCchhHHHHHHHhcCCCcEEEccCCCCCCCC-C
Q 019335 228 HLAFCKPPSN-DEESLAFSNLLKLSRFPQVYVKFSALFRVSRMPFPYQDLSSPLSQVVSSFGANRVMWGSDFPYVVPE-C 305 (342)
Q Consensus 228 H~G~~~p~~~-~~~~~~~~~~~~l~~~~Nvy~~~S~~~~~~~~~~~~~~~~~~l~~~i~~~G~dRilfGSD~P~~~~~-~ 305 (342)
|+........ .+....-+++..+.+ .+++++...- + +.. +. +.+..+++. |.-..++|||.+..... .
T Consensus 215 H~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~~~~~~g-~-s~~-----~~-~~~~~~l~~-G~~~~~lgTD~~~~~~~~~ 284 (379)
T PRK12394 215 HAFHGKGSTILTEEGAVLAEVRQARE-RGVIFDAANG-R-SHF-----DM-NVARRAIAN-GFLPDIISSDLSTITKLAW 284 (379)
T ss_pred ecCCCCCCCcCCCCCCChHHHHHHHh-CCeEEEecCC-c-ccc-----ch-HHHHHHHHC-CCCceEEECCCCCCCcccC
Confidence 9876431100 100000112222223 3477765431 1 110 11 345566654 43344789998664321 1
Q ss_pred ChHhHHHHHHHHHhcCCCCHHHHHHHHhHHHHHhcC
Q 019335 306 GYKGGREAASLIANEVPLSPSELEWIMGGTIMQLFQ 341 (342)
Q Consensus 306 ~~~~~~~~~~~~~~~~~l~~~~~~~I~~~NA~rl~~ 341 (342)
........+.... ..+++.++.=+....|+.++++
T Consensus 285 ~~~~l~~~~~~~~-~~~~~~~~~~~~at~~~a~~~g 319 (379)
T PRK12394 285 PVYSLPWVLSKYL-ALGMALEDVINACTHTPAVLMG 319 (379)
T ss_pred ccchHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHhC
Confidence 1122223343333 3689999999999999999886
No 50
>cd01315 L-HYD_ALN L-Hydantoinases (L-HYDs) and Allantoinase (ALN); L-Hydantoinases are a member of the dihydropyrimidinase family, which catalyzes the reversible hydrolytic ring opening of dihydropyrimidines and hydantoins (five-membered cyclic diamides used in biotechnology). But L-HYDs differ by having an L-enantio specificity and by lacking activity on possible natural substrates such as dihydropyrimidines. Allantoinase catalyzes the hydrolytic cleavage of the five-member ring of allantoin (5-ureidohydantoin) to form allantoic acid.
Probab=98.05 E-value=0.0014 Score=64.42 Aligned_cols=251 Identities=15% Similarity=0.096 Sum_probs=130.5
Q ss_pred CeeeeeeeccCCCCccCCCCCCCCCCCCCCCCChHHHHHHhHHCCCceEEEeCCCC-Cccch-HHHHHHHHhCCC-cEEE
Q 019335 61 KIIDSHLHVWASPEEAADKFPYFPGQEPTLPGHVDFLLQCMEEASVDGALIVQPIN-HKFDH-SLVTSVLKKYPS-KFVG 137 (342)
Q Consensus 61 ~iID~H~Hl~~~~~~~~~~~p~~~~~~~~~~~~~~~ll~~md~~GI~~~v~~~~~~-~~~~N-~~~~~~~~~~p~-r~~g 137 (342)
-.||+|+|+..+.. . .+.+....-+..-..||+..+.++.+. -...+ +.+....+.... -.+.
T Consensus 53 G~ID~H~H~~~~~~---------~-----~~e~~~~~s~aal~gGvTtv~d~p~~~~p~~~~~~~~~~~~~~~~~~~~~d 118 (447)
T cd01315 53 GLIDTHVHINEPGR---------T-----EWEGFETGTKAAAAGGITTIIDMPLNSIPPTTTVENLEAKLEAAQGKLHVD 118 (447)
T ss_pred cEeeceeccCCCCc---------c-----ccccHHHHHHHHHhCCceEEEeCCCCCCCCcCCHHHHHHHHHHhccCceee
Confidence 58999999974310 0 122333444445678999988775221 11122 222222222211 1222
Q ss_pred E---EEcCCCCcchHHHHHHHHHhcCCceEEEecCCCCC-CCC-cCCcHHHHHHHHHHhhhCCeEEEEeccCC-------
Q 019335 138 C---CLANPAEDVIGIKQLEQLILKDGFRAVRFNPYLWP-SGQ-QMTNEVGKAMFSKAGELGVPVGFMCMKGL------- 205 (342)
Q Consensus 138 ~---~~i~p~~~~~~~~eler~~~~~g~~Gvk~~~~~~~-~g~-~l~~~~~~~~~~~a~e~~lpv~iH~~~~~------- 205 (342)
+ +.+.+. ..++++++. +.|+.|+|....... .+. ..+++.+.+++++|+++|++|.+|+.+..
T Consensus 119 ~~~~~~~~~~----~~~ei~~l~-~~G~~giKv~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~vH~e~~~~~~~~~~ 193 (447)
T cd01315 119 VGFWGGLVPG----NLDQLRPLD-EAGVVGFKCFLCPSGVDEFPAVDDEQLEEAMKELAKTGSVLAVHAENPEITEALQE 193 (447)
T ss_pred EEEEEeecCC----CHHHHHHHH-HcCCcEEEEEecccCCCCcccCCHHHHHHHHHHHHhcCCeEEEEcCCHHHHHHHHH
Confidence 2 223333 346677764 568999986532111 111 35678899999999999999999986420
Q ss_pred --------------C--------CCHHHHHHHHHhCCCCcEEecccCCCCCCCCchhhHhHHHHhcc-cCCCcEEEecCc
Q 019335 206 --------------N--------LHISEIEELCTEFPSTTVLLDHLAFCKPPSNDEESLAFSNLLKL-SRFPQVYVKFSA 262 (342)
Q Consensus 206 --------------~--------~~~~~l~~l~~~~P~lk~vl~H~G~~~p~~~~~~~~~~~~~~~l-~~~~Nvy~~~S~ 262 (342)
. ..+..+..+++++ ++++.+.|+... . ..+.+... .+..+++++++.
T Consensus 194 ~~~~~g~~~~~~~~~~~p~~~e~~~~~~~~~la~~~-g~~ihi~h~s~~------~---~~~~i~~~~~~g~~i~~e~~~ 263 (447)
T cd01315 194 QAKAKGKRDYRDYLASRPVFTEVEAIQRILLLAKET-GCRLHIVHLSSA------E---AVPLIREARAEGVDVTVETCP 263 (447)
T ss_pred hHhhcCCCChHHhhccCCHHHHHHHHHHHHHHHHHh-CCCEEEEeCCCH------H---HHHHHHHHHHCCCceEEEecc
Confidence 0 0123455667777 499999998752 1 12222222 123456666553
Q ss_pred ccccc------------cCCCCCCCchhHHHHHHHhcC-CCcEEEccCC-CCCCCC------------C---ChHhHH-H
Q 019335 263 LFRVS------------RMPFPYQDLSSPLSQVVSSFG-ANRVMWGSDF-PYVVPE------------C---GYKGGR-E 312 (342)
Q Consensus 263 ~~~~~------------~~~~~~~~~~~~l~~~i~~~G-~dRilfGSD~-P~~~~~------------~---~~~~~~-~ 312 (342)
-+... ....|... ..--..+++.+- -...+.|||+ |+...+ . .....+ .
T Consensus 264 h~l~~~~~~~~~~~~~~~~~Pplr~-~~~~~~l~~~l~~g~i~~i~SDh~p~~~~~k~~~~~~~~~~~~g~~g~~~~~~~ 342 (447)
T cd01315 264 HYLTFTAEDVPDGGTEFKCAPPIRD-AANQEQLWEALENGDIDMVVSDHSPCTPELKLLGKGDFFKAWGGISGLQLGLPV 342 (447)
T ss_pred ccEEEcHHHccCCCCceEECCCCCC-hHHHHHHHHHHhCCceeEEeCCCCCCCHHHhccCCCChhhCCCCeeEHHHhHHH
Confidence 21110 00112211 122233344331 1256899994 654210 0 001111 1
Q ss_pred HHHHHHhcCCCCHHHHHHHHhHHHHHhcC
Q 019335 313 AASLIANEVPLSPSELEWIMGGTIMQLFQ 341 (342)
Q Consensus 313 ~~~~~~~~~~l~~~~~~~I~~~NA~rl~~ 341 (342)
.+..+.+..+++.++.-+.+..|..++++
T Consensus 343 ~~~~~~~~~~~~~~~~~~~~t~~pa~~~g 371 (447)
T cd01315 343 MLTEAVNKRGLSLEDIARLMCENPAKLFG 371 (447)
T ss_pred HHHHHHHcCCCCHHHHHHHHhHHHHHHhC
Confidence 12222234578999999999999999885
No 51
>TIGR03178 allantoinase allantoinase. This enzyme carries out the first step in the degradation of allantoin, a ring-opening hydrolysis. The seed members of this model are all in the vicinity of other genes involved in the processes of xanthine/urate/allantoin catabolism. Although not included in the seed, many eukaryotic homologs of this family are included above the trusted cutoff. Below the noise cutoff are related hydantoinases.
Probab=98.02 E-value=0.0013 Score=64.66 Aligned_cols=151 Identities=11% Similarity=0.017 Sum_probs=87.5
Q ss_pred CeeeeeeeccCCCCccCCCCCCCCCCCCCCCCChHHHHHHhHHCCCceEEEeCCCC-Cccch-HHHHHHHHhCCCc-EEE
Q 019335 61 KIIDSHLHVWASPEEAADKFPYFPGQEPTLPGHVDFLLQCMEEASVDGALIVQPIN-HKFDH-SLVTSVLKKYPSK-FVG 137 (342)
Q Consensus 61 ~iID~H~Hl~~~~~~~~~~~p~~~~~~~~~~~~~~~ll~~md~~GI~~~v~~~~~~-~~~~N-~~~~~~~~~~p~r-~~g 137 (342)
-.||+|+|+..+.. ..+.+.....+.+-..||+..+.++.+. ...++ +.+....+....+ .+-
T Consensus 52 G~ID~H~H~~~~~~--------------~~~~~~~~~~~~~~~gGvTtv~dmp~~~~p~~~~~~~~~~~~~~~~~~~~~d 117 (443)
T TIGR03178 52 GVVDTHVHINEPGR--------------TEWEGFETGTRAAAAGGITTYIDMPLNSIPATTTRASLEAKFEAAKGKLAVD 117 (443)
T ss_pred cEeccccccCCCCc--------------cccchHHHHHHHHHcCCeEEEEECCCCCCCCCCcHHHHHHHHHHhccCCcee
Confidence 58999999864310 0123444555567788999888875221 11222 2222222222111 222
Q ss_pred E---EEcCCCCcchHHHHHHHHHhcCCceEEEecCCCCCCC--CcCCcHHHHHHHHHHhhhCCeEEEEeccCC-------
Q 019335 138 C---CLANPAEDVIGIKQLEQLILKDGFRAVRFNPYLWPSG--QQMTNEVGKAMFSKAGELGVPVGFMCMKGL------- 205 (342)
Q Consensus 138 ~---~~i~p~~~~~~~~eler~~~~~g~~Gvk~~~~~~~~g--~~l~~~~~~~~~~~a~e~~lpv~iH~~~~~------- 205 (342)
+ ..+.+ +..+++++++ +.|+.|+++.......+ ...++..+.+.++.+.++|++|.+|+....
T Consensus 118 ~~~~~~~~~----~~~~~i~~~~-~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~E~~~~~~~~~~ 192 (443)
T TIGR03178 118 VGFWGGLVP----YNLDDLRELD-EAGVVGFKAFLSPSGDDEFPHVDDWQLYKGMRELARLGQLLLVHAENPAITSALGE 192 (443)
T ss_pred EEEEeccCC----CCHHHHHHHH-HCCCcEEEEEecccCCCCcccCCHHHHHHHHHHHHhcCCeEEEeccChHHHHHHHH
Confidence 2 22222 2356787774 67999999764321111 245677899999999999999999964210
Q ss_pred -----------------C-----CCHHHHHHHHHhCCCCcEEecccCC
Q 019335 206 -----------------N-----LHISEIEELCTEFPSTTVLLDHLAF 231 (342)
Q Consensus 206 -----------------~-----~~~~~l~~l~~~~P~lk~vl~H~G~ 231 (342)
| ..+..+..+++.+ ++++.+.|...
T Consensus 193 ~~~~~g~~~~~~~~~~~p~~ae~~~~~~~~~la~~~-g~~vhi~Hiss 239 (443)
T TIGR03178 193 EAPPQGGVGADAYLASRPVFAEVEAIRRTLALAKVT-GCRVHVVHLSS 239 (443)
T ss_pred HHHhcCCCChhHhcCcCCHHHHHHHHHHHHHHHHHh-CCCEEEEeCCC
Confidence 0 0012345566777 69999999986
No 52
>COG3964 Predicted amidohydrolase [General function prediction only]
Probab=98.02 E-value=0.001 Score=60.48 Aligned_cols=242 Identities=10% Similarity=-0.005 Sum_probs=121.6
Q ss_pred CeeeeeeeccCCCCccCCCCCCCCCCCCCCCCChHHHHHHhHHCCCceEEEeCCCCCccch-HHHHHHH-HhCCCcEEEE
Q 019335 61 KIIDSHLHVWASPEEAADKFPYFPGQEPTLPGHVDFLLQCMEEASVDGALIVQPINHKFDH-SLVTSVL-KKYPSKFVGC 138 (342)
Q Consensus 61 ~iID~H~Hl~~~~~~~~~~~p~~~~~~~~~~~~~~~ll~~md~~GI~~~v~~~~~~~~~~N-~~~~~~~-~~~p~r~~g~ 138 (342)
-+||.|+|+|.... .....++. .+-..||+..|--. ..+..| +--.+.. +....|+..|
T Consensus 58 G~iDlHvHvy~ggt--------------~~~v~pd~---~ga~~GvTTvVDAG--SaGaanf~gF~r~vie~Sr~RI~Af 118 (386)
T COG3964 58 GLIDLHVHVYYGGT--------------EGGVRPDM---YGAPNGVTTVVDAG--SAGAANFDGFYRTVIEASRVRIKAF 118 (386)
T ss_pred CeeeeeeEEecCCC--------------ccCcCHHH---ccccCCceEEEecC--CcCccchhhHHHHhhcchhheeeee
Confidence 68999999984211 01123333 34467887665432 334333 1112221 1222455555
Q ss_pred EEcC------------CCCcchHHHHHHHHHhc--CCceEEEecCCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEEeccC
Q 019335 139 CLAN------------PAEDVIGIKQLEQLILK--DGFRAVRFNPYLWPSGQQMTNEVGKAMFSKAGELGVPVGFMCMKG 204 (342)
Q Consensus 139 ~~i~------------p~~~~~~~~eler~~~~--~g~~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH~~~~ 204 (342)
..+. |.+.+ .+++.++.++ .-++|+|.-.... ......-.-++.-.+.++.+++|+.+|.++.
T Consensus 119 lnvs~~Gl~a~nE~~d~~nid--~d~i~aa~reh~d~ivGlKvR~s~~-~~g~~GitPl~la~~ia~~~klPlmvHigeP 195 (386)
T COG3964 119 LNVSPPGLTASNELYDPDNID--EDKIHAAFREHRDVIVGLKVRVSTE-DIGEYGITPLTLALRIANDLKLPLMVHIGEP 195 (386)
T ss_pred eeccCcceeeehhhCChhhCC--HHHHHHHHHhCcCcEEEEEEEeeec-cccccCCchHHHHHHHHhhcCCceEEecCCC
Confidence 4332 33322 2455555443 3468988754321 1112222345667888999999999999863
Q ss_pred CCCCHHHHHHHHHhCCCCcEEecccCCCCCCCCchhhHhHHHHhcccCCCcEEEecCccc-ccccCCCCCCCchhHHHHH
Q 019335 205 LNLHISEIEELCTEFPSTTVLLDHLAFCKPPSNDEESLAFSNLLKLSRFPQVYVKFSALF-RVSRMPFPYQDLSSPLSQV 283 (342)
Q Consensus 205 ~~~~~~~l~~l~~~~P~lk~vl~H~G~~~p~~~~~~~~~~~~~~~l~~~~Nvy~~~S~~~-~~~~~~~~~~~~~~~l~~~ 283 (342)
|....++.+.+++=- |+.||..++|...-..........+.++...|-+|...-. .++ + ...+.+
T Consensus 196 -p~~~dEvlerL~~GD----IitHcfngkpn~~l~~dg~vr~~vrra~erGV~fD~ghG~asfs--------f-~vAr~a 261 (386)
T COG3964 196 -PVLMDEVLERLRRGD----IITHCFNGKPNTILTDDGVVRAEVRRARERGVIFDAGHGRASFS--------F-NVARRA 261 (386)
T ss_pred -CccHHHHHHhccCCc----eeeeeccCCCCCccccchhHHHHHHHHHhcceEEEccCCcceee--------H-HHHHHH
Confidence 333355555555432 8899999887432111112222233444456899986321 111 1 234444
Q ss_pred HHhcCCCcEEEccCC-CCCCCCCChHhHHHHHHHHHhcCCCCHHHHHHHHhHHHHHhc
Q 019335 284 VSSFGANRVMWGSDF-PYVVPECGYKGGREAASLIANEVPLSPSELEWIMGGTIMQLF 340 (342)
Q Consensus 284 i~~~G~dRilfGSD~-P~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~I~~~NA~rl~ 340 (342)
+.. |.=--...||- -++...++.-.....+.+++ ..+++-.+.-.-.-.|+.++.
T Consensus 262 ia~-GllP~~ISSDlh~~~~~n~Pv~dla~~mSKll-algmpl~~Vi~avT~npA~~i 317 (386)
T COG3964 262 IAN-GLLPDIISSDLHTITKLNGPVYDLAWIMSKLL-ALGMPLTDVINAVTHNPAVLI 317 (386)
T ss_pred Hhc-CCCcceeeccceeeeecCchHHHHHHHHHHHH-HcCCcHHHHHHHHhcCHHHHh
Confidence 443 43333456773 22212211112233344444 367777666666666666654
No 53
>PRK09237 dihydroorotase; Provisional
Probab=98.01 E-value=0.0015 Score=62.92 Aligned_cols=244 Identities=13% Similarity=0.063 Sum_probs=123.0
Q ss_pred CeeeeeeeccCCCCccCCCCCCCCCCCCCCCCChHHHHHHhHHCCCceEEEeCCCCCccchHHHHHHHHhC-CCcEEEE-
Q 019335 61 KIIDSHLHVWASPEEAADKFPYFPGQEPTLPGHVDFLLQCMEEASVDGALIVQPINHKFDHSLVTSVLKKY-PSKFVGC- 138 (342)
Q Consensus 61 ~iID~H~Hl~~~~~~~~~~~p~~~~~~~~~~~~~~~ll~~md~~GI~~~v~~~~~~~~~~N~~~~~~~~~~-p~r~~g~- 138 (342)
-.||+|+|++... . ++ ..+. -+..-..||+..+.++. .....-+.+.+..++. .-++..+
T Consensus 54 G~iD~H~H~~~~~-----~-~~--------~~~~---~~~~~~~G~Ttv~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (380)
T PRK09237 54 GWIDLHVHVYPGS-----T-PY--------GDEP---DEVGVRSGVTTVVDAGS-AGADNFDDFRKLTIEASKTRVLAFL 115 (380)
T ss_pred CEEEeeecCCCCC-----C-cc--------CCCH---HHHHHhCCcCEEEECCC-CCCCCHHHHHHHHHhhhCcEEEEEE
Confidence 5899999997321 0 10 0111 23345789998876542 1122234444444432 2233322
Q ss_pred -----EEcCCCC---c-chHHHHHHHHHh--cCCceEEEecCCCC-CCCCcCCcHHHHHHHHHHhhhCCeEEEEeccCCC
Q 019335 139 -----CLANPAE---D-VIGIKQLEQLIL--KDGFRAVRFNPYLW-PSGQQMTNEVGKAMFSKAGELGVPVGFMCMKGLN 206 (342)
Q Consensus 139 -----~~i~p~~---~-~~~~~eler~~~--~~g~~Gvk~~~~~~-~~g~~l~~~~~~~~~~~a~e~~lpv~iH~~~~~~ 206 (342)
....+.. . ....+++++.+. ..|+.|+|...... ..+..++.. +...+.+++.|+||.+|+++. .
T Consensus 116 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~glk~~~~~~v~~~~~~~~~--~~~~~~a~~~g~~v~~H~~~~-~ 192 (380)
T PRK09237 116 NISRIGLLAQDELADLEDIDADAVAEAVKRNPDFIVGIKARMSSSVVGDNGIEPL--ELAKAIAAEANLPLMVHIGNP-P 192 (380)
T ss_pred eeecccccccchhcCHhHCCHHHHHHHHHhCcCcEEEEEEEEecccccccCCchH--HHHHHHHHhcCCCEEEEcCCC-C
Confidence 1122311 1 123466666665 35799998653211 001122332 333444558999999999754 2
Q ss_pred CCHHHHHHHHHhCCCCcEEecccCCCCCC-CCchhhHhHHHHhcccCCCcEEEecC-cccccccCCCCCCCchhHHHHHH
Q 019335 207 LHISEIEELCTEFPSTTVLLDHLAFCKPP-SNDEESLAFSNLLKLSRFPQVYVKFS-ALFRVSRMPFPYQDLSSPLSQVV 284 (342)
Q Consensus 207 ~~~~~l~~l~~~~P~lk~vl~H~G~~~p~-~~~~~~~~~~~~~~l~~~~Nvy~~~S-~~~~~~~~~~~~~~~~~~l~~~i 284 (342)
....++..+++ ++ .++.|+....+. ...+.....+.+.+..+ .++|+++. +...+ .. +....++
T Consensus 193 ~~~~~l~~~l~--~g--~~~~H~~~~~~~~~~~~~~~~~~~a~~~l~-~G~~~~ig~g~~~~--------~~-~~~~~l~ 258 (380)
T PRK09237 193 PSLEEILELLR--PG--DILTHCFNGKPNRILDEDGELRPSVLEALE-RGVRLDVGHGTASF--------SF-KVAEAAI 258 (380)
T ss_pred CCHHHHHhhcc--CC--CEEEecCCCCCCCccCCCCcchHHHHHHHH-CCEEEEecCCCCcc--------cH-HHHHHHH
Confidence 34556666554 23 267899876542 11111111122222222 26898875 11010 11 2334454
Q ss_pred HhcCCCcEEEccCCCCCC-CCCChHhHHHHHHHHHhcCCCCHHHHHHHHhHHHHHhcC
Q 019335 285 SSFGANRVMWGSDFPYVV-PECGYKGGREAASLIANEVPLSPSELEWIMGGTIMQLFQ 341 (342)
Q Consensus 285 ~~~G~dRilfGSD~P~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~I~~~NA~rl~~ 341 (342)
+. |.....++||..... ...........+..+. ..+++.++.-+....|+.++|+
T Consensus 259 ~~-g~~~~~l~tD~~~~~~~~~~~~~l~~~~~~~~-~~g~~~~~al~~aT~n~A~~lg 314 (380)
T PRK09237 259 AA-GILPDTISTDIYCRNRINGPVYSLATVMSKFL-ALGMPLEEVIAAVTKNAADALR 314 (380)
T ss_pred HC-CCCceEEECCCCCCCcccchHhHHHHHHHHHH-HhCCCHHHHHHHHHHHHHHHcC
Confidence 44 432226899963221 1111112334444443 3689999999999999999986
No 54
>PRK13404 dihydropyrimidinase; Provisional
Probab=97.98 E-value=0.0055 Score=60.86 Aligned_cols=256 Identities=11% Similarity=0.085 Sum_probs=134.8
Q ss_pred CeeeeeeeccCCCCccCCCCCCCCCCCCCCCCChHHHHHHhHHCCCceEEEeCCCCCccchHHHHHHHHhC--CCcEEEE
Q 019335 61 KIIDSHLHVWASPEEAADKFPYFPGQEPTLPGHVDFLLQCMEEASVDGALIVQPINHKFDHSLVTSVLKKY--PSKFVGC 138 (342)
Q Consensus 61 ~iID~H~Hl~~~~~~~~~~~p~~~~~~~~~~~~~~~ll~~md~~GI~~~v~~~~~~~~~~N~~~~~~~~~~--p~r~~g~ 138 (342)
-.||+|+|+..+.. .++. ...+........-..||+..+.+............++..+.. ...++.+
T Consensus 55 G~ID~H~H~~~~~~---~~~~--------~~e~~~~~s~aa~~gGvTtv~~~~~~~~~~~~~~~l~~~~~~~~~~~~vd~ 123 (477)
T PRK13404 55 GGVDSHCHIDQPSG---DGIM--------MADDFYTGTVSAAFGGTTTVIPFAAQHRGQSLREAVEDYHRRAAGKAVIDY 123 (477)
T ss_pred CEEEeEEcCCcccc---CCcc--------ccchHHHHHHHHHcCCccEEEEccCCCCCCCHHHHHHHHHHHhccCcEEEE
Confidence 68999999964310 0110 123344444455578999998865322122222222222211 1123222
Q ss_pred ---EEcCCCCcchHHHHHHHHHhcCCceEEEecCCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEEeccCC----------
Q 019335 139 ---CLANPAEDVIGIKQLEQLILKDGFRAVRFNPYLWPSGQQMTNEVGKAMFSKAGELGVPVGFMCMKGL---------- 205 (342)
Q Consensus 139 ---~~i~p~~~~~~~~eler~~~~~g~~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH~~~~~---------- 205 (342)
..+....++...+++++++ +.|+.+||+.... .+..++++.+..+++.|.++|++|.+|+.+..
T Consensus 124 ~~~~~~~~~~~~~~~~~v~~l~-~~G~~~iKi~~~~--~~~~~~~~~l~~~~~~a~~~g~~V~~Hae~~~~i~~~~~~~~ 200 (477)
T PRK13404 124 AFHLIVADPTEEVLTEELPALI-AQGYTSFKVFMTY--DDLKLDDRQILDVLAVARRHGAMVMVHAENHDMIAWLTKRLL 200 (477)
T ss_pred EEEEEecCCChhhHHHHHHHHH-HcCCCEEEEEecC--CCCCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHH
Confidence 2232222222236777774 6799999976432 13457788999999999999999999986310
Q ss_pred -----------CC--------CHHHHHHHHHhCCCCcEEecccCCCCCCCCchhhHhHHHHhccc-CCCcEEEecCcccc
Q 019335 206 -----------NL--------HISEIEELCTEFPSTTVLLDHLAFCKPPSNDEESLAFSNLLKLS-RFPQVYVKFSALFR 265 (342)
Q Consensus 206 -----------~~--------~~~~l~~l~~~~P~lk~vl~H~G~~~p~~~~~~~~~~~~~~~l~-~~~Nvy~~~S~~~~ 265 (342)
.. .+.....+++.+ +.++.+.|.... +.. +.+..+. +.-+++++++.-+.
T Consensus 201 ~~G~~~~~~~~~~rp~~~E~~~v~~~~~la~~~-g~~~hi~Hvs~~------~~~---~~i~~~k~~g~~vt~e~~ph~L 270 (477)
T PRK13404 201 AAGLTAPKYHAISRPMLAEREATHRAIALAELV-DVPILIVHVSGR------EAA---EQIRRARGRGLKIFAETCPQYL 270 (477)
T ss_pred HCCCcchhhccccCCHHHHHHHHHHHHHHHHHh-CCCEEEEECCCH------HHH---HHHHHHHHCCCeEEEEEChhhh
Confidence 00 012345566655 789989999862 111 1111121 12247777654322
Q ss_pred cc------c---------CCCCCCCchhHHHHHHHhcCCCcE-EEccC-CCCCCCCC----------ChH----------
Q 019335 266 VS------R---------MPFPYQDLSSPLSQVVSSFGANRV-MWGSD-FPYVVPEC----------GYK---------- 308 (342)
Q Consensus 266 ~~------~---------~~~~~~~~~~~l~~~i~~~G~dRi-lfGSD-~P~~~~~~----------~~~---------- 308 (342)
.. . ...|... ..-...+++.+-...| +.||| .|+...+. .+.
T Consensus 271 ~l~~~~~~~~~~~g~~~k~~Pplr~-~~d~~aL~~~l~~G~id~i~sDHap~~~~eK~~~~~~~~~~~~~~~~~G~~gie 349 (477)
T PRK13404 271 FLTAEDLDRPGMEGAKYICSPPPRD-KANQEAIWNGLADGTFEVFSSDHAPFRFDDTDGKLAAGANPSFKAIANGIPGIE 349 (477)
T ss_pred ccCHHHhcCccccCCceEECCCCCC-hHHHHHHHHHHhCCCceEEecCCCCCCcccchhhhhccCCCCHhhCCCCcccHH
Confidence 10 0 0112222 2233445555422233 68999 57752110 111
Q ss_pred hHHHH-HHHHHhcCCCCHHHHHHHHhHHHHHhcC
Q 019335 309 GGREA-ASLIANEVPLSPSELEWIMGGTIMQLFQ 341 (342)
Q Consensus 309 ~~~~~-~~~~~~~~~l~~~~~~~I~~~NA~rl~~ 341 (342)
..+.. +........++.++.-+++..|..++|+
T Consensus 350 ~~l~~ll~~~v~~~~ls~~~~~~~~t~~pA~~lg 383 (477)
T PRK13404 350 TRLPLLFSEGVVKGRISLNRFVALTSTNPAKLYG 383 (477)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhC
Confidence 01111 1112223468999999999999999986
No 55
>TIGR02967 guan_deamin guanine deaminase. This model describes guanine deaminase, which hydrolyzes guanine to xanthine and ammonia. Xanthine can then be converted to urate by xanthine dehydrogenase, and urate subsequently degraded. In some bacteria, the guanine deaminase gene is found near the xdhABC genes for xanthine dehydrogenase. Non-homologous forms of guanine deaminase also exist, as well as distantly related forms outside the scope of this model.
Probab=97.93 E-value=0.0024 Score=61.87 Aligned_cols=216 Identities=17% Similarity=0.116 Sum_probs=106.0
Q ss_pred HHHhHHCCCceEEEeCCCCCccchHHHHHHHHhCCCcEE-EEEEcC---CC---C-cchHHHHHHHHHh---cCCceEEE
Q 019335 98 LQCMEEASVDGALIVQPINHKFDHSLVTSVLKKYPSKFV-GCCLAN---PA---E-DVIGIKQLEQLIL---KDGFRAVR 166 (342)
Q Consensus 98 l~~md~~GI~~~v~~~~~~~~~~N~~~~~~~~~~p~r~~-g~~~i~---p~---~-~~~~~~eler~~~---~~g~~Gvk 166 (342)
+.+|-+.||+..+-+.. .+...-+.+.+.+++..-|++ +...++ |. + .....++.+++++ ..|...+.
T Consensus 96 ~~e~l~~GvTtv~d~~~-~~~~~~~~~~~a~~~~G~R~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~i~~~ 174 (401)
T TIGR02967 96 LDELLRNGTTTALVFAT-VHPESVDALFEAALKRGMRMIAGKVLMDRNAPDYLRDTAESSYDESKALIERWHGKGRLLYA 174 (401)
T ss_pred HHHHHhCCCcEEEeccc-cCHHHHHHHHHHHHHCCCeEEEeeeeecCCCCcccccCHHHHHHHHHHHHHHHhCcCCceEE
Confidence 34677889988775432 111112345566666655643 333333 22 1 1222334444332 22333333
Q ss_pred ecCCCCCCCCcCCcHHHHHHHHHHhhh-CCeEEEEeccCCCCCHHHHHHHHHhCC---------------CCcEEecccC
Q 019335 167 FNPYLWPSGQQMTNEVGKAMFSKAGEL-GVPVGFMCMKGLNLHISEIEELCTEFP---------------STTVLLDHLA 230 (342)
Q Consensus 167 ~~~~~~~~g~~l~~~~~~~~~~~a~e~-~lpv~iH~~~~~~~~~~~l~~l~~~~P---------------~lk~vl~H~G 230 (342)
+.+.. .....++.++.+.+.|.++ |++|.+|+.+. ..++..+.+.|+ +.++++.|+.
T Consensus 175 ~~~~~---~~~~s~e~l~~~~~~A~~~~g~~v~~H~~e~----~~~~~~~~~~~~~~~~~~~~l~~~g~lg~~~~~~H~~ 247 (401)
T TIGR02967 175 VTPRF---APTSSPEQLAAAGELAKEYPDVYVQTHLSEN----KDEIAWVKELFPEAKDYLDVYDHYGLLGRRSVFAHCI 247 (401)
T ss_pred EECCc---CCcCcHHHHHHHHHHHHhCCCCeeEEEECCC----chHHHHHHHHcCCCCcHHHHHHHCCCCCCCeEEEecc
Confidence 33321 2345678999999999999 99999999753 122333333332 4578899998
Q ss_pred CCCCCCCchhhHhHHHHhcccCCCcEEEecCccccc-ccCCCCCCCchhHHHHHHHhcCCCcEEEccCCCCCCCCCChHh
Q 019335 231 FCKPPSNDEESLAFSNLLKLSRFPQVYVKFSALFRV-SRMPFPYQDLSSPLSQVVSSFGANRVMWGSDFPYVVPECGYKG 309 (342)
Q Consensus 231 ~~~p~~~~~~~~~~~~~~~l~~~~Nvy~~~S~~~~~-~~~~~~~~~~~~~l~~~i~~~G~dRilfGSD~P~~~~~~~~~~ 309 (342)
... ++ ++..+++. ++++........ ...++ .-++.+++. |. ++.+|||++.......+..
T Consensus 248 ~~~----~~------~~~~l~~~-g~~v~~~P~~~~~~~~g~------~~~~~~~~~-Gv-~v~lGtD~~~~~~~~~~~~ 308 (401)
T TIGR02967 248 HLS----DE------ECQRLAET-GAAIAHCPTSNLFLGSGL------FNLKKALEH-GV-RVGLGTDVGGGTSFSMLQT 308 (401)
T ss_pred cCC----HH------HHHHHHHc-CCeEEEChHHHHHhccCC------CCHHHHHHC-CC-eEEEecCCCCCCCcCHHHH
Confidence 632 11 12223332 344433321000 01111 125555554 66 8999999865321111221
Q ss_pred HHHHHHHHH--hcCCCCHHHHHHHHhHHHHHhcC
Q 019335 310 GREAASLIA--NEVPLSPSELEWIMGGTIMQLFQ 341 (342)
Q Consensus 310 ~~~~~~~~~--~~~~l~~~~~~~I~~~NA~rl~~ 341 (342)
......+. ...+++.++.=+....|+.+.++
T Consensus 309 -~~~~~~~~~~~~~~~~~~~~l~~aT~~~A~~lg 341 (401)
T TIGR02967 309 -LREAYKVSQLQGARLSPFEAFYLATLGGARALD 341 (401)
T ss_pred -HHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHhC
Confidence 11111111 11346766555555566665553
No 56
>PRK08203 hydroxydechloroatrazine ethylaminohydrolase; Reviewed
Probab=97.89 E-value=0.0087 Score=58.97 Aligned_cols=218 Identities=12% Similarity=0.060 Sum_probs=105.9
Q ss_pred HHHhHHCCCceEEEeC---CCCCccchHHHHHHHHhCCCcEEEE-EEc---------CCC----CcchHHHHHHHHHhc-
Q 019335 98 LQCMEEASVDGALIVQ---PINHKFDHSLVTSVLKKYPSKFVGC-CLA---------NPA----EDVIGIKQLEQLILK- 159 (342)
Q Consensus 98 l~~md~~GI~~~v~~~---~~~~~~~N~~~~~~~~~~p~r~~g~-~~i---------~p~----~~~~~~~eler~~~~- 159 (342)
+.+|-+.|++...-+. +......-+.+.+.+++..=|.+.. ..+ ++. ..++.++..++.++.
T Consensus 111 ~~e~l~~G~Ttv~d~~~~~~~~~~~~~~~~~~a~~~~G~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~ 190 (451)
T PRK08203 111 LAELLLSGCTTSSDHHYLFPNGLRDALDDQIEAAREIGMRFHATRGSMSLGESDGGLPPDSVVEDEDAILADSQRLIDRY 190 (451)
T ss_pred HHHHHhcCcCEEEcceeeccccccchHHHHHHHHHHcCCeEEEecceeecCCccCCCCccccccCHHHHHHHHHHHHHHh
Confidence 3456678998877432 1111111234455555554455421 111 221 122234444444332
Q ss_pred -----CCceEEEecCCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEEeccCCCCCHHHHHHHH-----------HhC--CC
Q 019335 160 -----DGFRAVRFNPYLWPSGQQMTNEVGKAMFSKAGELGVPVGFMCMKGLNLHISEIEELC-----------TEF--PS 221 (342)
Q Consensus 160 -----~g~~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH~~~~~~~~~~~l~~l~-----------~~~--P~ 221 (342)
.+...+.+.+.. ....+++.+..+.+.|.++|+++.+|+.+. ........ .+. .+
T Consensus 191 ~~~~~~~~i~~~~~~~~---~~~~~~e~l~~~~~~A~~~g~~v~~H~~e~----~~~~~~~~~~~g~~~~~~l~~~g~l~ 263 (451)
T PRK08203 191 HDPGPGAMLRIALAPCS---PFSVSRELMRESAALARRLGVRLHTHLAET----LDEEAFCLERFGMRPVDYLEDLGWLG 263 (451)
T ss_pred cCCCCCCeEEEEEecCC---CCcCCHHHHHHHHHHHHHcCCcEEEEeCCC----HHHHHHHHHHhCCCHHHHHHHcCCCC
Confidence 134444444431 235667899999999999999999998643 22222222 222 24
Q ss_pred CcEEecccCCCCCCCCchhhHhHHHHhcccCCCcEEEecCcccc-cccCCCCCCCchhHHHHHHHhcCCCcEEEccCCCC
Q 019335 222 TTVLLDHLAFCKPPSNDEESLAFSNLLKLSRFPQVYVKFSALFR-VSRMPFPYQDLSSPLSQVVSSFGANRVMWGSDFPY 300 (342)
Q Consensus 222 lk~vl~H~G~~~p~~~~~~~~~~~~~~~l~~~~Nvy~~~S~~~~-~~~~~~~~~~~~~~l~~~i~~~G~dRilfGSD~P~ 300 (342)
-++++.|+....+ +++..+++. ++.+-...... ....+ ..-++.+++. |. ++.+|||+|.
T Consensus 264 ~~~~~~H~~~l~~----------~~~~~la~~-g~~v~~~P~~~~~l~~~------~~~~~~~~~~-Gv-~v~lGtD~~~ 324 (451)
T PRK08203 264 PDVWLAHCVHLDD----------AEIARLART-GTGVAHCPCSNMRLASG------IAPVRELRAA-GV-PVGLGVDGSA 324 (451)
T ss_pred CCeEEEEEeCCCH----------HHHHHHHhc-CCeEEECcHHhhhhccC------CCCHHHHHHC-CC-eEEEecCCCc
Confidence 5788999987421 112223332 23322211100 00001 1235666655 55 7999999976
Q ss_pred CCCCCC-hHhHHHHH--HHHHh-cCCCCHHHHHHHHhHHHHHhcC
Q 019335 301 VVPECG-YKGGREAA--SLIAN-EVPLSPSELEWIMGGTIMQLFQ 341 (342)
Q Consensus 301 ~~~~~~-~~~~~~~~--~~~~~-~~~l~~~~~~~I~~~NA~rl~~ 341 (342)
.....+ +......+ ..+.. ...++.++.=+....|+.++++
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~T~~~A~~lg 369 (451)
T PRK08203 325 SNDGSNLIGEARQALLLQRLRYGPDAMTAREALEWATLGGARVLG 369 (451)
T ss_pred cCCCcCHHHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHHHHHhC
Confidence 432212 22211111 11100 1136776666666777777654
No 57
>cd01298 ATZ_TRZ_like TRZ/ATZ family contains enzymes from the atrazine degradation pathway and related hydrolases. Atrazine, a chlorinated herbizide, can be catabolized by a variety of different bacteria. The first three steps of the atrazine dehalogenation pathway are catalyzed by atrazine chlorohydrolase (AtzA), hydroxyatrazine ethylaminohydrolase (AtzB), and N-isopropylammelide N-isopropylaminohydrolase (AtzC). All three enzymes belong to the superfamily of metal dependent hydrolases. AtzA and AtzB, beside other related enzymes are represented in this CD.
Probab=97.88 E-value=0.0037 Score=60.45 Aligned_cols=214 Identities=15% Similarity=0.112 Sum_probs=104.6
Q ss_pred HhHHCCCceEEEeCCCCCccchHHHHHHHHhCCCcE-EEEEEcCC--C---CcchHHHHHHHHHhc---CCceEEEecCC
Q 019335 100 CMEEASVDGALIVQPINHKFDHSLVTSVLKKYPSKF-VGCCLANP--A---EDVIGIKQLEQLILK---DGFRAVRFNPY 170 (342)
Q Consensus 100 ~md~~GI~~~v~~~~~~~~~~N~~~~~~~~~~p~r~-~g~~~i~p--~---~~~~~~~eler~~~~---~g~~Gvk~~~~ 170 (342)
.|-..||+..+-+.... .+...+..+...-|. .+.+.+.- . .....++++.+++++ .|...+++...
T Consensus 109 ~~l~~GvTtv~d~~~~~----~~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~ 184 (411)
T cd01298 109 EMIRSGTTTFADMYFFY----PDAVAEAAEELGIRAVLGRGIMDLGTEDVEETEEALAEAERLIREWHGAADGRIRVALA 184 (411)
T ss_pred HHHhcCccEEECccccc----hHHHHHHHHHhCCeEEEEcceecCCCcccccHHHHHHHHHHHHHHhcCCCCCceEEEEe
Confidence 45568998766442211 134444454433343 33333321 1 112234455554432 23444554422
Q ss_pred CCCCCCcCCcHHHHHHHHHHhhhCCeEEEEeccCCCCCHHHHHHH-----------HHhC--CCCcEEecccCCCCCCCC
Q 019335 171 LWPSGQQMTNEVGKAMFSKAGELGVPVGFMCMKGLNLHISEIEEL-----------CTEF--PSTTVLLDHLAFCKPPSN 237 (342)
Q Consensus 171 ~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH~~~~~~~~~~~l~~l-----------~~~~--P~lk~vl~H~G~~~p~~~ 237 (342)
.. .....+.+.+.++++.|.++|++|.+|+.+.. .....+ +.+. .+.++.+.|+....+
T Consensus 185 ~~-~~~~~~~~~l~~~~~~A~~~g~~v~~H~~e~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~l~~--- 256 (411)
T cd01298 185 PH-APYTCSDELLREVAELAREYGVPLHIHLAETE----DEVEESLEKYGKRPVEYLEELGLLGPDVVLAHCVWLTD--- 256 (411)
T ss_pred CC-CCccCCHHHHHHHHHHHHHcCCcEEEEecCCH----HHHHHHHHHhCCCHHHHHHHcCCCCCCeEEEEecCCCH---
Confidence 11 12345678899999999999999999986431 111111 1222 256778999876321
Q ss_pred chhhHhHHHHhcccCCCcEEEecCccccc-ccCCCCCCCchhHHHHHHHhcCCCcEEEccCCCCCCCCCChHhHHHHHHH
Q 019335 238 DEESLAFSNLLKLSRFPQVYVKFSALFRV-SRMPFPYQDLSSPLSQVVSSFGANRVMWGSDFPYVVPECGYKGGREAASL 316 (342)
Q Consensus 238 ~~~~~~~~~~~~l~~~~Nvy~~~S~~~~~-~~~~~~~~~~~~~l~~~i~~~G~dRilfGSD~P~~~~~~~~~~~~~~~~~ 316 (342)
+ . +..+++. ++++.+...... .... . .-++.+++. |. ++.+|||.|......+.-........
T Consensus 257 -~---~---~~~l~~~-gi~~~~~p~~~~~~~~~-----~-~~~~~~~~~-Gv-~~~~GsD~~~~~~~~~~~~~~~~~~~ 320 (411)
T cd01298 257 -E---E---IELLAET-GTGVAHNPASNMKLASG-----I-APVPEMLEA-GV-NVGLGTDGAASNNNLDMFEEMRLAAL 320 (411)
T ss_pred -H---H---HHHHHHc-CCeEEEChHHhhhhhhC-----C-CCHHHHHHC-CC-cEEEeCCCCccCCCcCHHHHHHHHHH
Confidence 1 1 2223333 344443321110 0001 1 235666665 55 58999998764322121111111101
Q ss_pred HHh-----cCCCCHHHHHHHHhHHHHHhcC
Q 019335 317 IAN-----EVPLSPSELEWIMGGTIMQLFQ 341 (342)
Q Consensus 317 ~~~-----~~~l~~~~~~~I~~~NA~rl~~ 341 (342)
+.. ...++.++.=+....|+.++++
T Consensus 321 ~~~~~~~~~~~~~~~~al~~~T~~~A~~lg 350 (411)
T cd01298 321 LQKLAHGDPTALPAEEALEMATIGGAKALG 350 (411)
T ss_pred HhccccCCCCcCCHHHHHHHHHhhHHHHhC
Confidence 110 0147887777777788877764
No 58
>PRK02382 dihydroorotase; Provisional
Probab=97.88 E-value=0.0032 Score=61.94 Aligned_cols=246 Identities=13% Similarity=0.078 Sum_probs=125.9
Q ss_pred CeeeeeeeccCCCCccCCCCCCCCCCCCCCCCChHHHHHHhHHCCCceEEEeCCCC-CccchHHHHHHHHh-CCCcEEEE
Q 019335 61 KIIDSHLHVWASPEEAADKFPYFPGQEPTLPGHVDFLLQCMEEASVDGALIVQPIN-HKFDHSLVTSVLKK-YPSKFVGC 138 (342)
Q Consensus 61 ~iID~H~Hl~~~~~~~~~~~p~~~~~~~~~~~~~~~ll~~md~~GI~~~v~~~~~~-~~~~N~~~~~~~~~-~p~r~~g~ 138 (342)
-.||+|+|+..+. +. ...+.+...+..-..||+..+.++... .....+.+....+. .....+.+
T Consensus 55 G~ID~H~H~~~~g------~~--------~~e~~~~~~~aa~~gGvTtv~~~~~t~p~~~~~~~~~~~~~~a~~~s~v~~ 120 (443)
T PRK02382 55 GGIDVHVHFREPG------YT--------HKETWYTGSRSAAAGGVTTVVDQPNTDPPTVDGESFDEKAELAARKSIVDF 120 (443)
T ss_pred CEeeeeeeccCCC------CC--------chhhHHHHHHHHHhCCcEEEEECCCCCCCCChHHHHHHHHHHhCcCceEEE
Confidence 5899999986431 10 123445555566678999888765321 11111222222221 11112322
Q ss_pred E--EcCCCCcchHHHHHHHHHhcCCceEE-EecCCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEEeccCC----------
Q 019335 139 C--LANPAEDVIGIKQLEQLILKDGFRAV-RFNPYLWPSGQQMTNEVGKAMFSKAGELGVPVGFMCMKGL---------- 205 (342)
Q Consensus 139 ~--~i~p~~~~~~~~eler~~~~~g~~Gv-k~~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH~~~~~---------- 205 (342)
. ..... ..++++.+++ .|+.++ |+....+..+..+++..+..+++.++++|++|.+|+.+..
T Consensus 121 ~~~~~~~~----~~~~l~~l~~-~gv~~~gkv~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~~~ 195 (443)
T PRK02382 121 GINGGVTG----NWDPLESLWE-RGVFALGEIFMADSTGGMGIDEELFEEALAEAARLGVLATVHAEDEDLFDELAKLLK 195 (443)
T ss_pred EEEeeecc----chhhHHHHHh-cCccceeEEEEEecCCCcccCHHHHHHHHHHHHhcCCeEEEecCCHHHHHHhhHhhc
Confidence 2 11111 2345666653 488777 5443222223446778899999999999999999986320
Q ss_pred ---------CCC--------HHHHHHHHHhCCCCcEEecccCCCCCCCCchhhHhHHHHhcccCCCcEEEecCccccc-c
Q 019335 206 ---------NLH--------ISEIEELCTEFPSTTVLLDHLAFCKPPSNDEESLAFSNLLKLSRFPQVYVKFSALFRV-S 267 (342)
Q Consensus 206 ---------~~~--------~~~l~~l~~~~P~lk~vl~H~G~~~p~~~~~~~~~~~~~~~l~~~~Nvy~~~S~~~~~-~ 267 (342)
... +..+..++++ .++++.+.|..... .++.+.+ .. |.++++.-+.. +
T Consensus 196 g~~~~~~~~~~~p~~~E~~av~~~~~la~~-~g~~~hi~h~ss~~---------~~~~i~~---~~-vt~ev~ph~L~l~ 261 (443)
T PRK02382 196 GDADADAWSAYRPAAAEAAAVERALEVASE-TGARIHIAHISTPE---------GVDAARR---EG-ITCEVTPHHLFLS 261 (443)
T ss_pred CCCCHhhCCCcCCHHHHHHHHHHHHHHHHH-hCCCEEEEECCCHH---------HHHHHHH---CC-cEEEEchhhhhcC
Confidence 000 1133445555 46999999998621 1211111 11 44444432111 0
Q ss_pred -----------cCCCCCCCchhHHHHHHHhc--CCCcEEEccC-CCCCCCCC------------ChHhHHHHHHHHHhcC
Q 019335 268 -----------RMPFPYQDLSSPLSQVVSSF--GANRVMWGSD-FPYVVPEC------------GYKGGREAASLIANEV 321 (342)
Q Consensus 268 -----------~~~~~~~~~~~~l~~~i~~~--G~dRilfGSD-~P~~~~~~------------~~~~~~~~~~~~~~~~ 321 (342)
....|... ..--+.+++.+ |.=. ..||| .|+...+. +.+..+..+....+..
T Consensus 262 ~~~~~~~~~~~k~~PPlr~-~~d~~aL~~~l~~g~i~-~i~sDh~P~~~~~K~~~~~~~~~G~~g~e~~~~~~~~~~~~~ 339 (443)
T PRK02382 262 RRDWERLGTFGKMNPPLRS-EKRREALWERLNDGTID-VVASDHAPHTREEKDADIWDAPSGVPGVETMLPLLLAAVRKN 339 (443)
T ss_pred HHHHhccCceEEEcCCCCC-hHHHHHHHHHHhCCCCC-EEEcCCCCCCHHHhcCChhhCCCCcccHHHHHHHHHHHHHcC
Confidence 00112222 13344455554 3222 48999 47642110 1111222222222345
Q ss_pred CCCHHHHHHHHhHHHHHhcC
Q 019335 322 PLSPSELEWIMGGTIMQLFQ 341 (342)
Q Consensus 322 ~l~~~~~~~I~~~NA~rl~~ 341 (342)
.++.++.-+.+..|..++|+
T Consensus 340 ~~~l~~~~~~~t~~pA~~~g 359 (443)
T PRK02382 340 RLPLERVRDVTAANPARIFG 359 (443)
T ss_pred CCCHHHHHHHHhHHHHHHcC
Confidence 78999999999999999986
No 59
>cd01308 Isoaspartyl-dipeptidase Isoaspartyl dipeptidase hydrolyzes the beta-L-isoaspartyl linkages in dipeptides, as part of the degradative pathway to eliminate proteins with beta-L-isoaspartyl peptide bonds, bonds whereby the beta-group of an aspartate forms the peptide link with the amino group of the following amino acid. Formation of this bond is a spontaneous nonenzymatic reaction in nature and can profoundly effect the function of the protein. Isoaspartyl dipeptidase is an octameric enzyme that contains a binuclear zinc center in the active site of each subunit and shows a strong preference of hydrolyzing Asp-Leu dipeptides.
Probab=97.83 E-value=0.0068 Score=58.39 Aligned_cols=153 Identities=14% Similarity=0.080 Sum_probs=78.8
Q ss_pred CCcHHHHHHHHHHhhhCC----e--EEEEeccCCCCCHHHHHHHHHhCC-CC-cEEecccCCCCCCCCchhhHhHHHHhc
Q 019335 178 MTNEVGKAMFSKAGELGV----P--VGFMCMKGLNLHISEIEELCTEFP-ST-TVLLDHLAFCKPPSNDEESLAFSNLLK 249 (342)
Q Consensus 178 l~~~~~~~~~~~a~e~~l----p--v~iH~~~~~~~~~~~l~~l~~~~P-~l-k~vl~H~G~~~p~~~~~~~~~~~~~~~ 249 (342)
.....+....++++..+. + +.+|++.. ...+.++.+++++.- ++ +++..|+... . ..+....+
T Consensus 166 ~~~~~~~~~~~~a~~~~~~~~~~~~~~vh~~~~-~~~~~~i~~~~~~~G~~~~~~~~~~~~~~-----~---~~~~~~~~ 236 (387)
T cd01308 166 PTVEELARIAAEARVGGLLGGKAGIVHIHLGDG-KRALSPIFELIEETEIPITQFLPTHINRT-----A---PLFEQGVE 236 (387)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCc-hHHHHHHHHHHHhcCCCcceeECCcccCC-----H---HHHHHHHH
Confidence 344556666666655333 4 55555532 234566767777641 23 5567666642 1 11222222
Q ss_pred ccCCC-cEEEecCcccccccCCCCCCCchhHHHHHHHh-cCCCcEEEccCC----CCCCCC--------CChHhHHHHHH
Q 019335 250 LSRFP-QVYVKFSALFRVSRMPFPYQDLSSPLSQVVSS-FGANRVMWGSDF----PYVVPE--------CGYKGGREAAS 315 (342)
Q Consensus 250 l~~~~-Nvy~~~S~~~~~~~~~~~~~~~~~~l~~~i~~-~G~dRilfGSD~----P~~~~~--------~~~~~~~~~~~ 315 (342)
.++.. .+-++..+...+.. ..+... ...++.+++. ++.|||+++||. |+.... .+.......+.
T Consensus 237 ~~~~G~~v~i~~~~~~~~~~-~~~~~~-~~~l~~~~~~g~~~d~i~l~TD~~~~~p~~~~~g~~~~~g~~~~~~~~~~~~ 314 (387)
T cd01308 237 FAKMGGTIDLTSSIDPQFRK-EGEVRP-SEALKRLLEQGVPLERITFSSDGNGSLPKFDENGNLVGLGVGSVDTLLREVR 314 (387)
T ss_pred HHHcCCcEEEECCCCccccc-cCccCh-HHHHHHHHHhCCCCCcEEEEECCCCCcccCccCCeEEecCcCcHHHHHHHHH
Confidence 22222 13333222211101 111112 3566677766 357999999996 332211 12223334444
Q ss_pred HHHhcCCCCHHHHHHHHhHHHHHhcC
Q 019335 316 LIANEVPLSPSELEWIMGGTIMQLFQ 341 (342)
Q Consensus 316 ~~~~~~~l~~~~~~~I~~~NA~rl~~ 341 (342)
.+.+..+++.++.-+.+..|+.++|+
T Consensus 315 ~~v~~~~i~~~~al~~~T~npA~~lg 340 (387)
T cd01308 315 EAVKCGDIPLEVALRVITSNVARILK 340 (387)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHhC
Confidence 44444469999999999999999986
No 60
>cd01320 ADA Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively. ADA plays an important role in the purine pathway. Low, as well as high levels of ADA activity have been linked to several diseases.
Probab=97.73 E-value=0.019 Score=53.90 Aligned_cols=215 Identities=13% Similarity=0.074 Sum_probs=106.6
Q ss_pred HHHhHHCCCceE-EEeCCCC---Cccch--------HHHHHHHHhCCCcEEEEEEcCCCCcchHHHH-HHHHH--hcCCc
Q 019335 98 LQCMEEASVDGA-LIVQPIN---HKFDH--------SLVTSVLKKYPSKFVGCCLANPAEDVIGIKQ-LEQLI--LKDGF 162 (342)
Q Consensus 98 l~~md~~GI~~~-v~~~~~~---~~~~N--------~~~~~~~~~~p~r~~g~~~i~p~~~~~~~~e-ler~~--~~~g~ 162 (342)
+++|-+.||... +-+.|.. .+..- +-+.+..++++-|..-...+....+.+..++ ++.+. ...++
T Consensus 79 ~~e~~~~Gvt~~E~~~~p~~~~~~~~~~~~~~~~~~~ai~~~~~~~gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v 158 (325)
T cd01320 79 LEDAAADGVVYAEIRFSPQLHTRRGLSFDEVVEAVLRGLDEAEAEFGIKARLILCGLRHLSPESAQETLELALKYRDKGV 158 (325)
T ss_pred HHHHHHcCCEEEEEEeCchhhccCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEEEecCCCCHHHHHHHHHHHHhccCCCE
Confidence 456778899754 2233311 11111 2233444556545443333444333222333 33222 22457
Q ss_pred eEEEecCCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEEeccCCCCCHHHHHHHHHhCCCCcEEecccCCCCCCCCchhhH
Q 019335 163 RAVRFNPYLWPSGQQMTNEVGKAMFSKAGELGVPVGFMCMKGLNLHISEIEELCTEFPSTTVLLDHLAFCKPPSNDEESL 242 (342)
Q Consensus 163 ~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH~~~~~~~~~~~l~~l~~~~P~lk~vl~H~G~~~p~~~~~~~~ 242 (342)
+|+.+.+.. .....+.+.++++.|.++|++|.+|+++. .....+...++++. .. .+.|+..... .+
T Consensus 159 vg~~l~~~~----~~~~~~~~~~~~~~A~~~g~~v~~H~~E~--~~~~~~~~a~~~~g-~~-~i~H~~~l~~---~~--- 224 (325)
T cd01320 159 VGFDLAGDE----VGFPPEKFVRAFQRAREAGLRLTAHAGEA--GGPESVRDALDLLG-AE-RIGHGIRAIE---DP--- 224 (325)
T ss_pred EEeecCCCC----CCCCHHHHHHHHHHHHHCCCceEEeCCCC--CCHHHHHHHHHHcC-Cc-ccchhhccCc---cH---
Confidence 788776431 22356789999999999999999999753 12344555555442 22 4678876310 00
Q ss_pred hHHHHhcccCCCcEEEecCcccccccCCCCCCCchhHHHHHHHhcCCCcEEEccCCCCCCCCCChHhHHHHHHHHHhcCC
Q 019335 243 AFSNLLKLSRFPQVYVKFSALFRVSRMPFPYQDLSSPLSQVVSSFGANRVMWGSDFPYVVPECGYKGGREAASLIANEVP 322 (342)
Q Consensus 243 ~~~~~~~l~~~~Nvy~~~S~~~~~~~~~~~~~~~~~~l~~~i~~~G~dRilfGSD~P~~~~~~~~~~~~~~~~~~~~~~~ 322 (342)
+.+..+++. ++.+.++..........+.... .-++.+++. |. +|..|||.|..... +.. +.+..+.+..+
T Consensus 225 --~~~~~l~~~-gi~v~~~P~sn~~l~~~~~~~~-~p~~~l~~~-Gv-~v~lgTD~~~~~~~-~~~---~e~~~~~~~~~ 294 (325)
T cd01320 225 --ELVKRLAER-NIPLEVCPTSNVQTGAVKSLAE-HPLRELLDA-GV-KVTINTDDPTVFGT-YLT---DEYELLAEAFG 294 (325)
T ss_pred --HHHHHHHHc-CCeEEECCCccccccccCCccc-ChHHHHHHC-CC-EEEECCCCCcccCC-CHH---HHHHHHHHHcC
Confidence 112222222 2444333211100000000001 236666655 54 78899998865432 222 22323333468
Q ss_pred CCHHHHHHHHhHHHH
Q 019335 323 LSPSELEWIMGGTIM 337 (342)
Q Consensus 323 l~~~~~~~I~~~NA~ 337 (342)
++.++..++. .|+.
T Consensus 295 l~~~el~~~~-~na~ 308 (325)
T cd01320 295 LTEEELKKLA-RNAV 308 (325)
T ss_pred CCHHHHHHHH-HHHH
Confidence 8999888865 5553
No 61
>cd01303 GDEase Guanine deaminase (GDEase). Guanine deaminase is an aminohydrolase responsible for the conversion of guanine to xanthine and ammonia, the first step to utilize guanine as a nitrogen source. This reaction also removes the guanine base from the pool and therefore can play a role in the regulation of cellular GTP and the guanylate nucleotide pool.
Probab=97.69 E-value=0.04 Score=53.95 Aligned_cols=127 Identities=17% Similarity=0.137 Sum_probs=70.6
Q ss_pred HHHhHHCCCceEEEeCCCCCccchHHHHHHHHhCCCcEE-EEEEcC---CCC----cchHH----HHHHHHHhcCCceEE
Q 019335 98 LQCMEEASVDGALIVQPINHKFDHSLVTSVLKKYPSKFV-GCCLAN---PAE----DVIGI----KQLEQLILKDGFRAV 165 (342)
Q Consensus 98 l~~md~~GI~~~v~~~~~~~~~~N~~~~~~~~~~p~r~~-g~~~i~---p~~----~~~~~----~eler~~~~~g~~Gv 165 (342)
+.+|=+.||+..+-+... +...-+.+.+.+++..=|.+ +...++ |.. ..+.+ +.++++....+...+
T Consensus 117 ~~e~l~~GvTtv~d~~~~-~~~~~~~~~~a~~~~G~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~ 195 (429)
T cd01303 117 LDELLRNGTTTACYFATI-HPESTEALFEEAAKRGQRAIAGKVCMDRNAPEYYRDTAESSYRDTKRLIERWHGKSGRVKP 195 (429)
T ss_pred HHHHHhCCceEEEeeccc-ChhHHHHHHHHHHHhCCeEEEeeeeecCCCCcccccCHHHHHHHHHHHHHHHhCcCCceEE
Confidence 346778899887644321 11112344555555443443 333333 321 11112 223343221244444
Q ss_pred EecCCCCCCCCcCCcHHHHHHHHHHhhhC-CeEEEEeccCCCCCHHHHHHHHHhCC---------------CCcEEeccc
Q 019335 166 RFNPYLWPSGQQMTNEVGKAMFSKAGELG-VPVGFMCMKGLNLHISEIEELCTEFP---------------STTVLLDHL 229 (342)
Q Consensus 166 k~~~~~~~~g~~l~~~~~~~~~~~a~e~~-lpv~iH~~~~~~~~~~~l~~l~~~~P---------------~lk~vl~H~ 229 (342)
.+.+.. .....++.+..+.+.|.++| ++|.+|+.++ ..++..+.++++ +.++++.|+
T Consensus 196 ~~~p~~---~~~~s~e~l~~~~~~A~~~g~~~v~~H~~e~----~~e~~~~~~~~g~~~~p~~~l~~~G~l~~~~~l~H~ 268 (429)
T cd01303 196 AITPRF---APSCSEELLAALGKLAKEHPDLHIQTHISEN----LDEIAWVKELFPGARDYLDVYDKYGLLTEKTVLAHC 268 (429)
T ss_pred EEecCc---CCcCCHHHHHHHHHHHHHCCCCeEEEeeCCC----HHHHHHHHHHcCCCCCHHHHHHHCCCCCCCcEEEeC
Confidence 444432 24556788999999999999 9999998743 345555666655 457899999
Q ss_pred CCC
Q 019335 230 AFC 232 (342)
Q Consensus 230 G~~ 232 (342)
...
T Consensus 269 ~~l 271 (429)
T cd01303 269 VHL 271 (429)
T ss_pred CCC
Confidence 863
No 62
>PRK13985 ureB urease subunit beta; Provisional
Probab=97.65 E-value=0.0015 Score=64.96 Aligned_cols=155 Identities=12% Similarity=0.032 Sum_probs=92.8
Q ss_pred CeeeeeeeccCCCCccCCCCCCCCCCCCCCCCChHHHHHHhHHCCCceEEEeCCCC----C------ccc-hHHHHHHHH
Q 019335 61 KIIDSHLHVWASPEEAADKFPYFPGQEPTLPGHVDFLLQCMEEASVDGALIVQPIN----H------KFD-HSLVTSVLK 129 (342)
Q Consensus 61 ~iID~H~Hl~~~~~~~~~~~p~~~~~~~~~~~~~~~ll~~md~~GI~~~v~~~~~~----~------~~~-N~~~~~~~~ 129 (342)
-.||+|+|+..+. . .+..-..||+..+.+.... . +.. -+.+.+.++
T Consensus 130 G~ID~HvH~~~P~-------------------~----~~~AlagGVTTvI~~G~gP~~~T~p~~~tpg~~~i~~ml~~a~ 186 (568)
T PRK13985 130 GGIDTHIHFISPQ-------------------Q----IPTAFASGVTTMIGGGTGPADGTNATTITPGRRNLKWMLRAAE 186 (568)
T ss_pred CEEEeeCCCCCcc-------------------H----HHHHhcCceEEEEccCcCCCCCCCCcCCCCcHHHHHHHHHHhh
Confidence 6899999986431 1 1234567999888742111 1 111 145566666
Q ss_pred hCCCcEEEEEEcCCCCcchHHHHHHHHHhcCCceEEEecCCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEEeccCCCCCH
Q 019335 130 KYPSKFVGCCLANPAEDVIGIKQLEQLILKDGFRAVRFNPYLWPSGQQMTNEVGKAMFSKAGELGVPVGFMCMKGLNLHI 209 (342)
Q Consensus 130 ~~p~r~~g~~~i~p~~~~~~~~eler~~~~~g~~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH~~~~~~~~~ 209 (342)
..|-.|..++.-+. ...++|++.+ +.|+.|++++..+ ..+...+...++.|.++|++|.+|+.......
T Consensus 187 ~~pvn~gf~gkG~~----~~l~eL~el~-~aGA~GfK~~ed~-----g~t~~~I~~aL~vA~~~dv~V~iHtdtlne~g- 255 (568)
T PRK13985 187 EYSMNLGFLGKGNS----SNDASLADQI-EAGAIGFKIHEDW-----GTTPSAINHALDVADKYDVQVAIHTDTLNEAG- 255 (568)
T ss_pred ccCccEEEecCCcc----CCHHHHHHHH-HcCCEEEEECCcc-----CCCHHHHHHHHHHHHHcCCEEEEeCCCCCCch-
Confidence 66633332221111 1246787774 6799999987432 24567899999999999999999997643332
Q ss_pred HHHHHHHHhCCCCcEEecccCCCCCCCCchhhHhHHHHhcccCCCcEE
Q 019335 210 SEIEELCTEFPSTTVLLDHLAFCKPPSNDEESLAFSNLLKLSRFPQVY 257 (342)
Q Consensus 210 ~~l~~l~~~~P~lk~vl~H~G~~~p~~~~~~~~~~~~~~~l~~~~Nvy 257 (342)
.++..++.+-+-.+-+.|.-+.-. . .-..+++++..|||-
T Consensus 256 -~~E~t~aa~~gr~iH~~H~egagg-----g--hapdi~~~~~~~nvl 295 (568)
T PRK13985 256 -CVEDTMAAIAGRTMHTFHTEGAGG-----G--HAPDIIKVAGEHNIL 295 (568)
T ss_pred -hhHHHHHHhcCCeEEEEeccCCCc-----c--chhhHHHHcCCCCcc
Confidence 233355666677777777654210 0 012355666677765
No 63
>PRK13206 ureC urease subunit alpha; Reviewed
Probab=97.57 E-value=0.0012 Score=65.95 Aligned_cols=136 Identities=14% Similarity=0.064 Sum_probs=83.2
Q ss_pred CeeeeeeeccCCCCccCCCCCCCCCCCCCCCCChHHHHHHhHHCCCceEEEeCCCC-----Cccch------HHHHHHHH
Q 019335 61 KIIDSHLHVWASPEEAADKFPYFPGQEPTLPGHVDFLLQCMEEASVDGALIVQPIN-----HKFDH------SLVTSVLK 129 (342)
Q Consensus 61 ~iID~H~Hl~~~~~~~~~~~p~~~~~~~~~~~~~~~ll~~md~~GI~~~v~~~~~~-----~~~~N------~~~~~~~~ 129 (342)
-.||+|+|+..+. ..+..-..||+..+-+.... ....+ .++.+..+
T Consensus 136 G~ID~HVH~~~Pg-----------------------~~~aALagGVTTvi~~G~gP~~~t~~~t~t~g~~~l~~~~~aa~ 192 (573)
T PRK13206 136 GAIDCHVHFICPQ-----------------------IVDEALAAGITTLIGGGTGPAEGSKATTVTPGAWHLARMLEALD 192 (573)
T ss_pred CEEeeeeccCCch-----------------------HHHHHHcCCeEEEEcCCCCccccCcccccccchhHHHHHHHHhh
Confidence 6899999986431 11444567998887642111 11111 24444444
Q ss_pred hCCCcEEEEEEcCCCCcchHHHHHHHHHhcCCceEEEecCCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEEeccCCCCCH
Q 019335 130 KYPSKFVGCCLANPAEDVIGIKQLEQLILKDGFRAVRFNPYLWPSGQQMTNEVGKAMFSKAGELGVPVGFMCMKGLNLHI 209 (342)
Q Consensus 130 ~~p~r~~g~~~i~p~~~~~~~~eler~~~~~g~~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH~~~~~~~~~ 209 (342)
..|-.|...+..+.. ..++|+++ .+.|+.|+|++..+ ..++..+...++.|.++|++|.+|+........
T Consensus 193 ~~pvn~g~~g~g~~~----~~~~L~el-~~aGA~GfKi~~d~-----g~t~~~i~~aL~~A~~~gv~V~iHadtlne~g~ 262 (573)
T PRK13206 193 GWPVNVALLGKGNTV----SAEALWEQ-LRGGAGGFKLHEDW-----GSTPAAIDACLRVADAAGVQVALHSDTLNEAGF 262 (573)
T ss_pred cCceeEEEecCcCcC----CHHHHHHH-HHCCCcEEeecCcc-----CCCHHHHHHHHHHHHHhCCEEEEECCCccccch
Confidence 444333333322222 23577777 47799999988532 267789999999999999999999975433333
Q ss_pred HHHHHHHHhCCCCcEEecccCC
Q 019335 210 SEIEELCTEFPSTTVLLDHLAF 231 (342)
Q Consensus 210 ~~l~~l~~~~P~lk~vl~H~G~ 231 (342)
.+. -+..+-+-.+.+.|.-+
T Consensus 263 ~E~--t~aa~~gr~iH~~H~eg 282 (573)
T PRK13206 263 VED--TLAAIAGRSIHAYHTEG 282 (573)
T ss_pred hhH--HHHHhcCCeEEEEeccC
Confidence 222 45556677787778644
No 64
>PRK08044 allantoinase; Provisional
Probab=97.55 E-value=0.017 Score=56.86 Aligned_cols=251 Identities=12% Similarity=0.029 Sum_probs=137.0
Q ss_pred CeeeeeeeccCCCCccCCCCCCCCCCCCCCCCChHHHHHHhHHCCCceEEEeCCCC-CccchHHH----HHHHHhCCC-c
Q 019335 61 KIIDSHLHVWASPEEAADKFPYFPGQEPTLPGHVDFLLQCMEEASVDGALIVQPIN-HKFDHSLV----TSVLKKYPS-K 134 (342)
Q Consensus 61 ~iID~H~Hl~~~~~~~~~~~p~~~~~~~~~~~~~~~ll~~md~~GI~~~v~~~~~~-~~~~N~~~----~~~~~~~p~-r 134 (342)
-.||+|+|+..+.. . ...+.....+.+-..||+..+.++.+. -..++... .+..+...- .
T Consensus 54 g~iD~h~h~~~~~~----~----------~~e~~~~~~~aa~~gGvTtv~d~~~~~~p~~~~~~~~~~~~~~~~~~s~vd 119 (449)
T PRK08044 54 GMVDAHTHISEPGR----S----------HWEGYETGTRAAAKGGITTMIEMPLNQLPATVDRASIELKFDAAKGKLTID 119 (449)
T ss_pred CeeccccccCCCCc----c----------ccccHHHHHHHHHhCCceEEECCccCCCCCCCcHHHHHHHHHHhccCCeee
Confidence 48999999864311 0 123456666777789999888775221 11222222 222222110 1
Q ss_pred EEEEEEcCCCCcchHHHHHHHHHhcCCceEEEecCCCC-C----CC-CcCCcHHHHHHHHHHhhhCCeEEEEeccCC---
Q 019335 135 FVGCCLANPAEDVIGIKQLEQLILKDGFRAVRFNPYLW-P----SG-QQMTNEVGKAMFSKAGELGVPVGFMCMKGL--- 205 (342)
Q Consensus 135 ~~g~~~i~p~~~~~~~~eler~~~~~g~~Gvk~~~~~~-~----~g-~~l~~~~~~~~~~~a~e~~lpv~iH~~~~~--- 205 (342)
+...+.+... .++++..+. +.|++|+|+...+. + .+ ..+++..+...++++.++|.+|.+|+.+..
T Consensus 120 ~~~~~~~~~~----~~~ei~~l~-~~gv~~fk~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~H~E~~~l~~ 194 (449)
T PRK08044 120 AAQLGGLVSY----NLDRLHELD-EVGVVGFKCFVATCGDRGIDNDFRDVNDWQFYKGAQKLGELGQPVLVHCENALICD 194 (449)
T ss_pred EEEEeeeCCC----CHHHHHHHH-HcCceEEEEEecccCcccccCCccCcCHHHHHHHHHHHHhcCCEEEEecCCHHHHH
Confidence 3323444432 246677764 67999999763211 0 11 235677888999999999999999985320
Q ss_pred ------------------CC--------CHHHHHHHHHhCCCCcEEecccCCCCCCCCchhhHhHHHHhcc-cCCCcEEE
Q 019335 206 ------------------NL--------HISEIEELCTEFPSTTVLLDHLAFCKPPSNDEESLAFSNLLKL-SRFPQVYV 258 (342)
Q Consensus 206 ------------------~~--------~~~~l~~l~~~~P~lk~vl~H~G~~~p~~~~~~~~~~~~~~~l-~~~~Nvy~ 258 (342)
.. .+..+..+++++ ++++-+.|.... + .++.+.+. .+..++++
T Consensus 195 ~~~~~~~~~G~~~~~~~~~~~P~~~E~~~v~r~~~lA~~~-g~~vhi~HiSt~------~---~~~~i~~ak~~G~~it~ 264 (449)
T PRK08044 195 ELGEEAKREGRVTAHDYVASRPVFTEVEAIRRVLYLAKVA-GCRLHVCHISSP------E---GVEEVTRARQEGQDVTC 264 (449)
T ss_pred HHHHHHHhcCCCChhhccccCCHHHHHHHHHHHHHHHHHh-CCCEEEEeCCCH------H---HHHHHHHHHHCCCCEEE
Confidence 00 012345566666 678888998752 1 12222222 12345777
Q ss_pred ecCccccccc------------CCCCCCCchhHHHHHHHhcCCC-cEEEccC-CCCCCCCC--Ch----------HhHHH
Q 019335 259 KFSALFRVSR------------MPFPYQDLSSPLSQVVSSFGAN-RVMWGSD-FPYVVPEC--GY----------KGGRE 312 (342)
Q Consensus 259 ~~S~~~~~~~------------~~~~~~~~~~~l~~~i~~~G~d-RilfGSD-~P~~~~~~--~~----------~~~~~ 312 (342)
+++.-+.... ...|... ..-.+.+++.+-.. --+.||| -|+...+. ++ ...+.
T Consensus 265 e~~~h~L~l~~~~~~~~~~~~k~~PPlr~-~~d~~aL~~~l~~G~id~i~sDH~P~~~~~K~~~~~~~~~g~~g~e~~l~ 343 (449)
T PRK08044 265 ESCPHYFVLDTDQFEEIGTLAKCSPPIRD-LENQKGMWEKLFNGEIDCLVSDHSPCPPEMKAGNIMEAWGGIAGLQNCMD 343 (449)
T ss_pred EcChhhhcccHHHhhCCCCcEEEcCCCCC-hHHHHHHHHHHhCCCceEEEcCCCCCChHHccCChhhCCCCceEHHHHHH
Confidence 6664332210 0113222 23345666665322 4478999 47643211 11 01111
Q ss_pred -HHHHHHhcCCCCHHHHHHHHhHHHHHhcC
Q 019335 313 -AASLIANEVPLSPSELEWIMGGTIMQLFQ 341 (342)
Q Consensus 313 -~~~~~~~~~~l~~~~~~~I~~~NA~rl~~ 341 (342)
.+....+..+++.++.-+.+..|..|+|+
T Consensus 344 ~~~~~~v~~~~l~~~~~v~~~s~npA~~lg 373 (449)
T PRK08044 344 VMFDEAVQKRGMSLPMFGKLMATNAADIFG 373 (449)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHhHHHHhC
Confidence 12222334579999999999999999986
No 65
>PRK13308 ureC urease subunit alpha; Reviewed
Probab=97.52 E-value=0.0026 Score=63.43 Aligned_cols=156 Identities=13% Similarity=0.088 Sum_probs=94.7
Q ss_pred CCeeeeeeeccCCCCccCCCCCCCCCCCCCCCCChHHHHHHhHHCCCceEEEeC--CC----CCccc-hHHHHHHHHhCC
Q 019335 60 VKIIDSHLHVWASPEEAADKFPYFPGQEPTLPGHVDFLLQCMEEASVDGALIVQ--PI----NHKFD-HSLVTSVLKKYP 132 (342)
Q Consensus 60 ~~iID~H~Hl~~~~~~~~~~~p~~~~~~~~~~~~~~~ll~~md~~GI~~~v~~~--~~----~~~~~-N~~~~~~~~~~p 132 (342)
.-.||+|+|+..+. +.+..-..||+..+... |. ..+.. -+.+.+..+..|
T Consensus 133 PG~ID~HVH~~~Pg-----------------------~~~aALagGVTTVi~gg~gPt~p~~t~g~~~i~~~l~aa~~~p 189 (569)
T PRK13308 133 PGAIDVHVHFDSAQ-----------------------LVDHALASGITTMLGGGLGPTVGIDSGGPFNTGRMLQAAEAWP 189 (569)
T ss_pred eCEEEeeeCCCCcc-----------------------HHHHHHcCCCcEEecCCcCCCCCCCCCCHHHHHHHHHHHhcCC
Confidence 36899999986431 11444567999888642 20 11111 134455555555
Q ss_pred CcEEEEEEcCCCCcchHHHHHHHHHhcCCceEEEecCCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEEeccCCCCCHHHH
Q 019335 133 SKFVGCCLANPAEDVIGIKQLEQLILKDGFRAVRFNPYLWPSGQQMTNEVGKAMFSKAGELGVPVGFMCMKGLNLHISEI 212 (342)
Q Consensus 133 ~r~~g~~~i~p~~~~~~~~eler~~~~~g~~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH~~~~~~~~~~~l 212 (342)
=.|..++..... ..++|++++ +.|+.|+|++..+ + .+...++..++.|.++|++|.+|+...... -.+
T Consensus 190 vN~g~~gkG~~s----~~aeL~eli-~aGA~GfKi~ed~---g--~t~~~i~~aL~~A~~~dv~VaiHadtlne~--g~~ 257 (569)
T PRK13308 190 VNFGFLGRGNSS----KPAALIEQV-EAGACGLKIHEDW---G--AMPAAIDTCLEVADEYDFQVQLHTDTLNES--GFV 257 (569)
T ss_pred ccEEEEcCCccc----CHHHHHHHH-HCCCCEEeecCCC---C--CCHHHHHHHHHHHHhcCCEEEEeCCCcCcc--hHH
Confidence 333222222211 246787774 6799999988542 2 356789999999999999999999754322 234
Q ss_pred HHHHHhCCCCcEEecccCCCCCCCCchhhHhHHHHhcccCCCcEE
Q 019335 213 EELCTEFPSTTVLLDHLAFCKPPSNDEESLAFSNLLKLSRFPQVY 257 (342)
Q Consensus 213 ~~l~~~~P~lk~vl~H~G~~~p~~~~~~~~~~~~~~~l~~~~Nvy 257 (342)
+..++.+-+..+-+.|.-+.-. . .-..++++...|||-
T Consensus 258 E~t~~a~~gr~iH~~H~egagg-----g--hapd~l~~~~~~n~l 295 (569)
T PRK13308 258 EDTLAAIGGRTIHMYHTEGAGG-----G--HAPDIIRVVGEPHCL 295 (569)
T ss_pred HHHHHHhcCCeEEEEeccCCcc-----C--chhHHHHHhCCCCcc
Confidence 5566677788888888766210 0 012355566677765
No 66
>cd01316 CAD_DHOase The eukaryotic CAD protein is a trifunctional enzyme of carbamoylphosphate synthetase-aspartate transcarbamoylase-dihydroorotase, which catalyzes the first three steps of de novo pyrimidine nucleotide biosynthesis. Dihydroorotase (DHOase) catalyzes the third step, the reversible interconversion of carbamoyl aspartate to dihydroorotate.
Probab=97.51 E-value=0.033 Score=52.91 Aligned_cols=245 Identities=11% Similarity=-0.001 Sum_probs=120.8
Q ss_pred CeeeeeeeccCCCCccCCCCCCCCCCCCCCCCChHHHHHHhHHCCCceEEEeCCCCCccchHHHH-HHHHhCCC-cEE--
Q 019335 61 KIIDSHLHVWASPEEAADKFPYFPGQEPTLPGHVDFLLQCMEEASVDGALIVQPINHKFDHSLVT-SVLKKYPS-KFV-- 136 (342)
Q Consensus 61 ~iID~H~Hl~~~~~~~~~~~p~~~~~~~~~~~~~~~ll~~md~~GI~~~v~~~~~~~~~~N~~~~-~~~~~~p~-r~~-- 136 (342)
-.||.|+|+-.+. +. ...+.+.--+..-.-||+..+.++...-..++...+ ...+...+ -.+
T Consensus 7 G~ID~HvH~r~pg------~~--------~~ed~~sgs~AAa~GGvTtv~dmPnt~P~~~~~~~~~~~~~~a~~~s~vd~ 72 (344)
T cd01316 7 GLIDVHVHLREPG------AT--------HKEDFASGTKAALAGGFTMVRAMPNTNPSIVDVASLKLVQSLAQAKARCDY 72 (344)
T ss_pred CeEEeeeccCCCC------cC--------CcChHHHHHHHHHhCCCeEEEECCCCCCCCCCHHHHHHHHHHhccCcEEeE
Confidence 4699999996541 11 123444444455567999998876322222333222 22222111 122
Q ss_pred E-EEEcCCCCcchHHHHHHHHHhcCCceEEEecCCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEEeccCCCCCHHHHHHH
Q 019335 137 G-CCLANPAEDVIGIKQLEQLILKDGFRAVRFNPYLWPSGQQMTNEVGKAMFSKAGELGVPVGFMCMKGLNLHISEIEEL 215 (342)
Q Consensus 137 g-~~~i~p~~~~~~~~eler~~~~~g~~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH~~~~~~~~~~~l~~l 215 (342)
+ .+.+..... ++++++.. +..|++...........+++.........+...+.|+..|.-. ..+..+..+
T Consensus 73 ~~~~~~~~~~~----~~~~~l~~--~~~g~k~f~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~e~---~~~~~~l~l 143 (344)
T cd01316 73 AFSIGATSTNA----ATVGELAS--EAVGLKFYLNETFSTLILDKITAWASHFNAWPSTKPIVTHAKS---QTLAAVLLL 143 (344)
T ss_pred EEEeeecCCCH----HHHHHHHh--ccCeEEEEECCCCCCCccchHHHHHHHHHhcccCCCeEEehhh---HHHHHHHHH
Confidence 2 233433322 23444321 2456665432100011233332222222333448888888642 233456777
Q ss_pred HHhCCCCcEEecccCCCCCCCCchhhHhHHHHhccc-CCCcEEEecCccccccc----------CCCCCCCchhHHHHHH
Q 019335 216 CTEFPSTTVLLDHLAFCKPPSNDEESLAFSNLLKLS-RFPQVYVKFSALFRVSR----------MPFPYQDLSSPLSQVV 284 (342)
Q Consensus 216 ~~~~P~lk~vl~H~G~~~p~~~~~~~~~~~~~~~l~-~~~Nvy~~~S~~~~~~~----------~~~~~~~~~~~l~~~i 284 (342)
++.+ +.++.+.|.... + ..+.+.+.. +.-+|+++++.-+.... ...|..+ ..--+.++
T Consensus 144 a~~~-g~~lhi~HiSt~------~---~~~~i~~ak~~g~~vt~ev~phhL~l~~~~~~~~~~k~~PPLR~-~~dr~aL~ 212 (344)
T cd01316 144 ASLH-NRSIHICHVSSK------E---EINLIRLAKARGLKVTCEVSPHHLFLSQDDLPRGQYEVRPFLPT-REDQEALW 212 (344)
T ss_pred HHHH-CCCEEEEeCCCH------H---HHHHHHHHHHCCCcEEEEechHHeeccHHHhhcCCceeCCCCcC-HHHHHHHH
Confidence 7776 899999999862 1 112222221 23468888875433210 1112221 12233444
Q ss_pred HhcC-CCcEEEccC-CCCCCCCC----------ChHhHHHHHHHHHhcCCCCHHHHHHHHhHHHHHhcC
Q 019335 285 SSFG-ANRVMWGSD-FPYVVPEC----------GYKGGREAASLIANEVPLSPSELEWIMGGTIMQLFQ 341 (342)
Q Consensus 285 ~~~G-~dRilfGSD-~P~~~~~~----------~~~~~~~~~~~~~~~~~l~~~~~~~I~~~NA~rl~~ 341 (342)
+.++ .| +.||| .|+...+. +.+..+..+....+...++-+...++++.|..++||
T Consensus 213 ~~l~~id--~i~SDHaP~~~~~K~~~~a~~G~~g~e~~lpl~~~~v~~~~i~l~~l~~~~s~nPAk~~g 279 (344)
T cd01316 213 ENLDYID--CFATDHAPHTLAEKTGNKPPPGFPGVETSLPLLLTAVHEGRLTIEDIVDRLHTNPKRIFN 279 (344)
T ss_pred HHHhcCC--EEEcCCCCCCHHHhcCCCCCCCcccHHHHHHHHHHHHHcCCCCHHHHHHHHHHhHHHHhC
Confidence 4443 22 88999 57653220 111122222222233468999999999999999996
No 67
>PRK06189 allantoinase; Provisional
Probab=97.51 E-value=0.041 Score=54.27 Aligned_cols=250 Identities=10% Similarity=0.031 Sum_probs=131.3
Q ss_pred CeeeeeeeccCCCCccCCCCCCCCCCCCCCCCChHHHHHHhHHCCCceEEEeCCCC--CccchH---HHHHHHHhCCC-c
Q 019335 61 KIIDSHLHVWASPEEAADKFPYFPGQEPTLPGHVDFLLQCMEEASVDGALIVQPIN--HKFDHS---LVTSVLKKYPS-K 134 (342)
Q Consensus 61 ~iID~H~Hl~~~~~~~~~~~p~~~~~~~~~~~~~~~ll~~md~~GI~~~v~~~~~~--~~~~N~---~~~~~~~~~p~-r 134 (342)
-.||+|+|+..+.. . ...+.....+..-..||+..+.++.+. .....+ ...+.++...- .
T Consensus 55 G~ID~H~H~~~~~~---------~-----~~~~~~~~~~aa~~gGvTt~~~~p~~t~p~~~~~~~~~~~~~~~~~~~~~d 120 (451)
T PRK06189 55 GMIDVHVHFNEPGR---------T-----HWEGFATGSAALAAGGCTTYFDMPLNSIPPTVTREALDAKAELARQKSAVD 120 (451)
T ss_pred CEEEeeeccCCCCC---------C-----CcccHHHHHHHHHhCCEEEEEECCCCCCCCCCcHHHHHHHHHHhCcCceEe
Confidence 58999999864210 0 123455555666678999988874121 111112 22232222110 1
Q ss_pred EEEEEEcCCCCcchHHHHHHHHHhcCCceEEEecCCCCC-CCC-cCCcHHHHHHHHHHhhhCCeEEEEeccCC-------
Q 019335 135 FVGCCLANPAEDVIGIKQLEQLILKDGFRAVRFNPYLWP-SGQ-QMTNEVGKAMFSKAGELGVPVGFMCMKGL------- 205 (342)
Q Consensus 135 ~~g~~~i~p~~~~~~~~eler~~~~~g~~Gvk~~~~~~~-~g~-~l~~~~~~~~~~~a~e~~lpv~iH~~~~~------- 205 (342)
+..+..+.+. ..++|.++. +.|++++++...... .+. ..++..+.+.+++++++|.++.+|+.+..
T Consensus 121 ~~~~~~~~~~----~~~~l~~l~-~~Gv~~~k~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~e~~~~~~~~~~ 195 (451)
T PRK06189 121 FALWGGLVPG----NLEHLRELA-EAGVIGFKAFMSNSGTDEFRSSDDLTLYEGMKEIAALGKILALHAESDALTRHLTT 195 (451)
T ss_pred EEEEeccccc----CHHHHHHHH-HcCCcEEEEEccccCCCCcCcCCHHHHHHHHHHHHhcCCeEEEECCChHHHHHHHH
Confidence 1112223332 246787774 679999997643211 112 34567889999999999999999985321
Q ss_pred --------------CC--------CHHHHHHHHHhCCCCcEEecccCCCCCCCCchhhHhHHHHhccc-CCCcEEEecCc
Q 019335 206 --------------NL--------HISEIEELCTEFPSTTVLLDHLAFCKPPSNDEESLAFSNLLKLS-RFPQVYVKFSA 262 (342)
Q Consensus 206 --------------~~--------~~~~l~~l~~~~P~lk~vl~H~G~~~p~~~~~~~~~~~~~~~l~-~~~Nvy~~~S~ 262 (342)
.. .+..+..+++. .++++.+.|.... + ..+.+.+.. +..+++++++.
T Consensus 196 ~~~~~g~~~~~~~~~~~P~~~E~~~v~~~l~la~~-~g~~~hi~HiSt~------~---~~~~i~~~k~~g~~vt~ev~p 265 (451)
T PRK06189 196 QARQQGKTDVRDYLESRPVVAELEAVQRALLYAQE-TGCPLHFVHISSG------K---AVALIAEAKKRGVDVSVETCP 265 (451)
T ss_pred HHHhcCCCChhHccccCCHHHHHHHHHHHHHHHHH-hCCCEEEEECCCH------H---HHHHHHHHHHCCCcEEEEeCH
Confidence 00 01123344444 4799999999862 1 111122222 23467777775
Q ss_pred cccc-ccC-----------CCCCCC--chhHHHHHHHhcCCCcEEEccCC-CCCCCC---CCh----------HhHHHHH
Q 019335 263 LFRV-SRM-----------PFPYQD--LSSPLSQVVSSFGANRVMWGSDF-PYVVPE---CGY----------KGGREAA 314 (342)
Q Consensus 263 ~~~~-~~~-----------~~~~~~--~~~~l~~~i~~~G~dRilfGSD~-P~~~~~---~~~----------~~~~~~~ 314 (342)
-+.. +.. ..|... ..+.+.++++. | .-...|||. |+...+ .++ +..+..+
T Consensus 266 h~L~l~~~~~~~~~~~~~~~Pplr~~~~~~~L~~~l~~-G-~i~~i~sDh~p~~~~~K~~~~~~~~~~G~~g~e~~l~~~ 343 (451)
T PRK06189 266 HYLLFTEEDFERIGAVAKCAPPLRSRSQKEELWRGLLA-G-EIDMISSDHSPCPPELKEGDDFFLVWGGISGGQSTLLVM 343 (451)
T ss_pred HHhhcCHhHhhCcCCceEEeCCCCChhhHHHHHHHHhC-C-CceEEECCCCCCCHHHcCcCCcccCCCCceeHHHHHHHH
Confidence 3221 100 112221 12333333333 2 244789995 664321 011 1111111
Q ss_pred H-HHHhcCCCCHHHHHHHHhHHHHHhcC
Q 019335 315 S-LIANEVPLSPSELEWIMGGTIMQLFQ 341 (342)
Q Consensus 315 ~-~~~~~~~l~~~~~~~I~~~NA~rl~~ 341 (342)
. .......++.++.-+.+..|..++|+
T Consensus 344 ~~~~~~~~~l~~~~~~~~~t~npA~~lg 371 (451)
T PRK06189 344 LTEGYIERGIPLETIARLLATNPAKRFG 371 (451)
T ss_pred HHHHHhcCCCCHHHHHHHHhhhHHHHhC
Confidence 1 12123468999999999999999986
No 68
>cd01314 D-HYD D-hydantoinases (D-HYD) also called dihydropyrimidases (DHPase) and related proteins; DHPases are a family of enzymes that catalyze the reversible hydrolytic ring opening of the amide bond in five- or six-membered cyclic diamides, like dihydropyrimidine or hydantoin. The hydrolysis of dihydropyrimidines is the second step of reductive catabolism of pyrimidines in human. The hydrolysis of 5-substituted hydantoins in microorganisms leads to enantiomerically pure N-carbamyl amino acids, which are used for the production of antibiotics, peptide hormones, pyrethroids, and pesticides. HYDs are classified depending on their stereoselectivity. This family also includes collapsin response regulators (CRMPs), cytosolic proteins involved in neuronal differentiation and axonal guidance which have strong homology to DHPases, but lack most of the active site residues.
Probab=97.48 E-value=0.062 Score=52.80 Aligned_cols=52 Identities=19% Similarity=0.154 Sum_probs=38.8
Q ss_pred hHHHHHHHHHhcCCceEEEecCCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEEe
Q 019335 148 IGIKQLEQLILKDGFRAVRFNPYLWPSGQQMTNEVGKAMFSKAGELGVPVGFMC 201 (342)
Q Consensus 148 ~~~~eler~~~~~g~~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH~ 201 (342)
+.+++++++++ .|..++++..... .....+++.+..+++++.++|++|.+|+
T Consensus 131 ~~~~~~~~l~~-~g~~~ik~~~~~~-~~~~~s~~~l~~~~~~a~~~g~~v~~H~ 182 (447)
T cd01314 131 SVIEELPELVK-KGISSFKVFMAYK-GLLMVDDEELLDVLKRAKELGALVMVHA 182 (447)
T ss_pred HHHHHHHHHHH-cCCCEEEEEeccC-CCCCCCHHHHHHHHHHHHhcCCeEEEEc
Confidence 35677888754 6777888764321 1234578899999999999999999997
No 69
>COG1735 Php Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only]
Probab=97.47 E-value=0.0043 Score=56.68 Aligned_cols=223 Identities=14% Similarity=0.143 Sum_probs=118.0
Q ss_pred HCCCceEEEeCCCCCccchHHHHHHHHhCCCcEEEEEEcC-----CCC----c-chH----HHHHHHHHhcCCce-E-EE
Q 019335 103 EASVDGALIVQPINHKFDHSLVTSVLKKYPSKFVGCCLAN-----PAE----D-VIG----IKQLEQLILKDGFR-A-VR 166 (342)
Q Consensus 103 ~~GI~~~v~~~~~~~~~~N~~~~~~~~~~p~r~~g~~~i~-----p~~----~-~~~----~~eler~~~~~g~~-G-vk 166 (342)
..|+...|-..+...+-+-..|.+.+++-.=++++...+. |.. + ++. ++|+++-+..-+++ | |+
T Consensus 59 a~Gg~TIVD~T~~~~GRdv~~m~~vs~atglnIV~~TGfy~~~~~p~~~~~~~i~~~ae~~v~ei~~Gi~gT~ikAGiIk 138 (316)
T COG1735 59 ARGGQTIVDATNIGIGRDVLKMRRVAEATGLNIVAATGFYKAAFHPEYFALRPIEELAEFVVKEIEEGIAGTGIKAGIIK 138 (316)
T ss_pred HcCCCeEeeCCccccCcCHHHHHHHHHHhCCcEEEeccccccccchhHHhhCCHHHHHHHHHHHHHhcccCCccccceee
Confidence 4699888876655677777888888888654566543322 211 1 111 22222222111222 1 23
Q ss_pred ecCCCCCCCC-cCCcHHHHHHHHHHhhhCCeEEEEeccCCCCCHHHHHHHHHhC--CCCcEEecccCCCCCCCCchhhHh
Q 019335 167 FNPYLWPSGQ-QMTNEVGKAMFSKAGELGVPVGFMCMKGLNLHISEIEELCTEF--PSTTVLLDHLAFCKPPSNDEESLA 243 (342)
Q Consensus 167 ~~~~~~~~g~-~l~~~~~~~~~~~a~e~~lpv~iH~~~~~~~~~~~l~~l~~~~--P~lk~vl~H~G~~~p~~~~~~~~~ 243 (342)
..... + +. .+-.+.++..-++..+.|.|+..|+..+. -.++++ +++... +=-|++|+||+...- ...
T Consensus 139 ~~~~~-~-~iTp~Eek~lrAaA~A~~~Tg~Pi~tHt~~gt-~g~eq~-~il~~egvdl~~v~igH~d~n~d------d~~ 208 (316)
T COG1735 139 EAGGS-P-AITPLEEKSLRAAARAHKETGAPISTHTPAGT-MGLEQL-RILAEEGVDLRKVSIGHMDPNTD------DVY 208 (316)
T ss_pred eccCc-c-cCCHHHHHHHHHHHHHhhhcCCCeEEeccchh-hhHHHH-HHHHHcCCChhHeeEeccCCCCC------hHH
Confidence 33321 1 11 12234556666666778999999986542 223333 444433 235789999994211 112
Q ss_pred HHHHhcccCCCcEEEecCcccccccCCCCCCC-chhHHHHHHHhcCCCcEEEc-------cCCCCCCCC-----CChHhH
Q 019335 244 FSNLLKLSRFPQVYVKFSALFRVSRMPFPYQD-LSSPLSQVVSSFGANRVMWG-------SDFPYVVPE-----CGYKGG 310 (342)
Q Consensus 244 ~~~~~~l~~~~Nvy~~~S~~~~~~~~~~~~~~-~~~~l~~~i~~~G~dRilfG-------SD~P~~~~~-----~~~~~~ 310 (342)
+++ .++.. .+|+.+-.+-...- +|.+. ..+.++.+-+.+ .|+|+.| +|.+..... ..|.-.
T Consensus 209 y~~--~l~~~-Ga~l~fD~iG~d~y--~pd~~r~~~~~~l~~~gy-~d~i~ls~d~~~~~~~~~~~~~~~~~~~~g~~~I 282 (316)
T COG1735 209 YQK--KLADR-GAFLEFDRIGKDKY--YPDEDRIAPLLELVARGY-ADLILLSHDDICLSDDVFLKSMLKANGGWGYGYI 282 (316)
T ss_pred HHH--HHHhc-CceEEecccCcccc--CcHHHhhhhHHHHHHhhH-hhheecccchhhhhhhHHHHhhhhhcCCcccchh
Confidence 322 23332 36766665422111 12222 223333333343 7788887 555543221 234434
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHhHHHHHhcC
Q 019335 311 REAASLIANEVPLSPSELEWIMGGTIMQLFQ 341 (342)
Q Consensus 311 ~~~~~~~~~~~~l~~~~~~~I~~~NA~rl~~ 341 (342)
.+.+--.++..|++++..+++|-+|.+|+|.
T Consensus 283 ~~~fIP~Lk~~Gvde~~i~~mlvdNP~r~f~ 313 (316)
T COG1735 283 LNDFIPRLKRHGVDEETIDTMLVDNPARLFT 313 (316)
T ss_pred hHhhHHHHHHcCCCHHHHHHHHhhCHHHHhc
Confidence 4333233456899999999999999999985
No 70
>PRK06687 chlorohydrolase; Validated
Probab=97.46 E-value=0.023 Score=55.36 Aligned_cols=105 Identities=13% Similarity=0.037 Sum_probs=56.3
Q ss_pred HHHhHHCCCceEEEeCCCCCccchHHHHHHHHhCCCcEEEE-EEcC--CCCcchHHHHHHHHHhc---CCceEEEecCCC
Q 019335 98 LQCMEEASVDGALIVQPINHKFDHSLVTSVLKKYPSKFVGC-CLAN--PAEDVIGIKQLEQLILK---DGFRAVRFNPYL 171 (342)
Q Consensus 98 l~~md~~GI~~~v~~~~~~~~~~N~~~~~~~~~~p~r~~g~-~~i~--p~~~~~~~~eler~~~~---~g~~Gvk~~~~~ 171 (342)
+.+|-+.||+..+-+.. ..+..-+.+.+.+++..-|.... ...+ ....++.+++.++++++ .+-.-++.....
T Consensus 109 ~~e~l~~GvTTv~d~~~-~~~~~~~~~~~a~~~~Gir~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~ 187 (419)
T PRK06687 109 LTEMLQSGTTTFNDMYN-PNGVDIQQIYQVVKTSKMRCYFSPTLFSSETETTAETISRTRSIIDEILKYKNPNFKVMVAP 187 (419)
T ss_pred HHHHHhcCcceeehhhc-cccccHHHHHHHHHHhCCceEeccccccCCcccHHHHHHHHHHHHHHHhccCCCceEEEEeC
Confidence 34677889988775432 12223344566666655444321 1111 22122234444444322 121113332221
Q ss_pred CCCCCcCCcHHHHHHHHHHhhhCCeEEEEeccC
Q 019335 172 WPSGQQMTNEVGKAMFSKAGELGVPVGFMCMKG 204 (342)
Q Consensus 172 ~~~g~~l~~~~~~~~~~~a~e~~lpv~iH~~~~ 204 (342)
. .....+++.+..+++.|.++|+++.+|+.+.
T Consensus 188 ~-~~~~~s~e~l~~~~~~A~~~g~~i~~H~~e~ 219 (419)
T PRK06687 188 H-SPYSCSRDLLEASLEMAKELNIPLHVHVAET 219 (419)
T ss_pred C-CCCCCCHHHHHHHHHHHHHcCCcEEEEeCCC
Confidence 1 1345678899999999999999999999753
No 71
>cd00375 Urease_alpha Urease alpha-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, fungi and plants. Their primary role is to allow the use of external and internally generated urea as a nitrogen source. The enzyme consists of 3 subunits, alpha, beta and gamma, which can be fused and present on a single protein chain and which in turn forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=97.46 E-value=0.0036 Score=62.39 Aligned_cols=155 Identities=15% Similarity=0.093 Sum_probs=93.1
Q ss_pred CeeeeeeeccCCCCccCCCCCCCCCCCCCCCCChHHHHHHhHHCCCceEEEeC--C----CC-Cccc----hHHHHHHHH
Q 019335 61 KIIDSHLHVWASPEEAADKFPYFPGQEPTLPGHVDFLLQCMEEASVDGALIVQ--P----IN-HKFD----HSLVTSVLK 129 (342)
Q Consensus 61 ~iID~H~Hl~~~~~~~~~~~p~~~~~~~~~~~~~~~ll~~md~~GI~~~v~~~--~----~~-~~~~----N~~~~~~~~ 129 (342)
-.||+|+|+..+. +.+..-..||+..+.+. | +. .... -..+++.++
T Consensus 130 G~ID~HvH~~~P~-----------------------~~~aAlagGVTTvI~~G~gP~~gtnatp~t~g~~~l~~ml~aa~ 186 (567)
T cd00375 130 GGIDTHVHFICPQ-----------------------QIEEALASGITTMIGGGTGPAAGTKATTCTPGPWNIKRMLQAAD 186 (567)
T ss_pred ceEECccCCCCcc-----------------------HHHHHHcCCCcEEEcCCcCcccccCCCCCCCCHHHHHHHHHHhh
Confidence 6899999986421 12444567999888752 2 00 0111 134455555
Q ss_pred hCCCcEEEEEEcCCCCcchHHHHHHHHHhcCCceEEEecCCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEEeccCCCCCH
Q 019335 130 KYPSKFVGCCLANPAEDVIGIKQLEQLILKDGFRAVRFNPYLWPSGQQMTNEVGKAMFSKAGELGVPVGFMCMKGLNLHI 209 (342)
Q Consensus 130 ~~p~r~~g~~~i~p~~~~~~~~eler~~~~~g~~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH~~~~~~~~~ 209 (342)
..|-.|..++..+ . +..++|++++ +.|+.|++++..+ + .+...++..++.|.++|++|.+|+.......
T Consensus 187 ~~pin~g~~gkg~---~-~~l~eL~e~~-~aGA~GfK~~eD~---g--~t~~~i~~aL~~A~~~dv~VaiHadtlne~g- 255 (567)
T cd00375 187 GLPVNIGFLGKGN---G-SSPDALAEQI-EAGACGLKLHEDW---G--ATPAAIDTCLSVADEYDVQVAIHTDTLNESG- 255 (567)
T ss_pred cCCceEEEEecCc---c-ccHHHHHHHH-HcCCEEEEecCCC---C--CCHHHHHHHHHHHHhhCCEEEEECCCCCcch-
Confidence 5553333222212 1 2356777774 6799999988542 2 3677899999999999999999997543232
Q ss_pred HHHHHHHHhCCCCcEEecccCCCCCCCCchhhHhHHHHhcccCCCcEE
Q 019335 210 SEIEELCTEFPSTTVLLDHLAFCKPPSNDEESLAFSNLLKLSRFPQVY 257 (342)
Q Consensus 210 ~~l~~l~~~~P~lk~vl~H~G~~~p~~~~~~~~~~~~~~~l~~~~Nvy 257 (342)
.++.-+..+-+-.+...|.-+.-. . .-..+++++..|||.
T Consensus 256 -~~E~t~aa~~gr~iH~~H~egagg-----g--hapdi~~~~~~~nvl 295 (567)
T cd00375 256 -FVEDTIAAIKGRTIHTYHTEGAGG-----G--HAPDIIKVAGHPNVL 295 (567)
T ss_pred -HHHHHHHHhcCCeEEEEecCCCCc-----c--cchHHHHhcCCCCcc
Confidence 233355667777788888654210 0 011245566667665
No 72
>PRK13309 ureC urease subunit alpha; Reviewed
Probab=97.44 E-value=0.0034 Score=62.95 Aligned_cols=137 Identities=14% Similarity=0.027 Sum_probs=84.9
Q ss_pred CCeeeeeeeccCCCCccCCCCCCCCCCCCCCCCChHHHHHHhHHCCCceEEEeCCCC-------Cccc----hHHHHHHH
Q 019335 60 VKIIDSHLHVWASPEEAADKFPYFPGQEPTLPGHVDFLLQCMEEASVDGALIVQPIN-------HKFD----HSLVTSVL 128 (342)
Q Consensus 60 ~~iID~H~Hl~~~~~~~~~~~p~~~~~~~~~~~~~~~ll~~md~~GI~~~v~~~~~~-------~~~~----N~~~~~~~ 128 (342)
.-.||+|+|+..+. ..+..-..||+..|-..... .... -.++++..
T Consensus 133 PG~ID~HvH~~~P~-----------------------~~~aAl~gGVTTvi~~G~gp~~~~n~~~~t~g~~~i~~~l~~a 189 (572)
T PRK13309 133 AAGIDTHIHLISPQ-----------------------QAYHALSNGVTTFFGGGIGPTDGTNGTTVTPGPWNIRQMLRSI 189 (572)
T ss_pred eCEEEeecccCCcc-----------------------hHHHHHcCceEEEEecCCCCccCCCCCCCCCCHHHHHHHHHHh
Confidence 36899999986431 11234466998887432110 0011 24455656
Q ss_pred HhCCCcEEEEEEcCCCCcchHHHHHHHHHhcCCceEEEecCCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEEeccCCCCC
Q 019335 129 KKYPSKFVGCCLANPAEDVIGIKQLEQLILKDGFRAVRFNPYLWPSGQQMTNEVGKAMFSKAGELGVPVGFMCMKGLNLH 208 (342)
Q Consensus 129 ~~~p~r~~g~~~i~p~~~~~~~~eler~~~~~g~~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH~~~~~~~~ 208 (342)
+..|-.|..++.-... ..++|.+.+ +.|+.|++++..+ + .++..+...++.|.++|++|.+|+......
T Consensus 190 ~~~pvn~g~~gkg~~~----~~~~l~el~-~aGa~gfk~~~d~---g--~t~~~L~~aLe~A~~~gv~VaiH~d~lnE~- 258 (572)
T PRK13309 190 EGLPVNVGILGKGNSY----GRGPLLEQA-IAGVAGYKVHEDW---G--ATAAALRHALRVADEVDIQVAVHTDSLNEC- 258 (572)
T ss_pred ccCCcCEEEEcCCCCC----CHHHHHHHH-hcCcEEEEecCcC---C--cCHHHHHHHHHHHHhcCCEEEEeCCccccc-
Confidence 6666333333221111 135666664 6799999988542 2 266789999999999999999998754322
Q ss_pred HHHHHHHHHhCCCCcEEecccCC
Q 019335 209 ISEIEELCTEFPSTTVLLDHLAF 231 (342)
Q Consensus 209 ~~~l~~l~~~~P~lk~vl~H~G~ 231 (342)
..++....++.+-.+-..|.-+
T Consensus 259 -g~vE~~~aa~~grpih~~H~~G 280 (572)
T PRK13309 259 -GYVEDTIDAFEGRTIHTFHTEG 280 (572)
T ss_pred -hhHHHHHHHhCCCceeeeeccC
Confidence 4556668888877777777644
No 73
>cd01293 Bact_CD Bacterial cytosine deaminase and related metal-dependent hydrolases. Cytosine deaminases (CDs) catalyze the deamination of cytosine, producing uracil and ammonia. They play an important role in pyrimidine salvage. CDs are present in prokaryotes and fungi, but not mammalian cells. The bacterial enzymes, but not the fungal enzymes, are related to the adenosine deaminases (ADA). The bacterial enzymes are iron dependent and hexameric.
Probab=97.43 E-value=0.027 Score=54.04 Aligned_cols=133 Identities=11% Similarity=-0.030 Sum_probs=70.9
Q ss_pred HHHHhHHCCCceEEEeC-CCCC-c-cchHHHHHHHHhCCCcEEE-EEEcCCC---CcchHHHHHHHHHhcCCceEEEecC
Q 019335 97 LLQCMEEASVDGALIVQ-PINH-K-FDHSLVTSVLKKYPSKFVG-CCLANPA---EDVIGIKQLEQLILKDGFRAVRFNP 169 (342)
Q Consensus 97 ll~~md~~GI~~~v~~~-~~~~-~-~~N~~~~~~~~~~p~r~~g-~~~i~p~---~~~~~~~eler~~~~~g~~Gvk~~~ 169 (342)
.+.+|-+.||+....+. .... . ...+.+.++.+++..++.. ...+++. ..++..+.++++.+ .|..-+...+
T Consensus 101 ~~~~~l~~GvTtv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~g~~~~~~~~ 179 (398)
T cd01293 101 ALELAIAHGTTAIRTHVDVDPAAGLKALEALLELREEWADLIDLQIVAFPQHGLLSTPGGEELMREALK-MGADVVGGIP 179 (398)
T ss_pred HHHHHHHcChhheeeeecccccccchHHHHHHHHHHHhhccceEEEEeccCccccCCCCHHHHHHHHHH-hCCCEEeCCC
Confidence 35577788998764321 1111 0 1123455555566544432 2233332 11345566777754 3321111111
Q ss_pred CCCCCCCcCCcHHHHHHHHHHhhhCCeEEEEeccCCCC---CHHHHHHHHHhCC-CCcEEecccCCC
Q 019335 170 YLWPSGQQMTNEVGKAMFSKAGELGVPVGFMCMKGLNL---HISEIEELCTEFP-STTVLLDHLAFC 232 (342)
Q Consensus 170 ~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH~~~~~~~---~~~~l~~l~~~~P-~lk~vl~H~G~~ 232 (342)
.. .......+.+..+++.|.++|+|+.+|+.+.... ...+..+.+.++- .-++++.|+...
T Consensus 180 ~~--~~~~~s~e~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~~~~~~~~g~~~~~~i~H~~~~ 244 (398)
T cd01293 180 PA--EIDEDGEESLDTLFELAQEHGLDIDLHLDETDDPGSRTLEELAEEAERRGMQGRVTCSHATAL 244 (398)
T ss_pred CC--cCCccHHHHHHHHHHHHHHhCCCCEEEeCCCCCcchhHHHHHHHHHHHhCCCCCEEeeecchh
Confidence 11 1233456789999999999999999999754221 1223344444442 135789998763
No 74
>TIGR01430 aden_deam adenosine deaminase. This family includes the experimentally verified adenosine deaminases of mammals and E. coli. Other members of this family are predicted also to be adenosine deaminase, an enzyme of nucleotide degradation. This family is distantly related to AMP deaminase.
Probab=97.41 E-value=0.028 Score=52.82 Aligned_cols=156 Identities=15% Similarity=0.107 Sum_probs=83.0
Q ss_pred CceEEEecCCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEEeccCCCCCHHHHHHHHHhCCCCcEEecccCCCCCCCCchh
Q 019335 161 GFRAVRFNPYLWPSGQQMTNEVGKAMFSKAGELGVPVGFMCMKGLNLHISEIEELCTEFPSTTVLLDHLAFCKPPSNDEE 240 (342)
Q Consensus 161 g~~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH~~~~~~~~~~~l~~l~~~~P~lk~vl~H~G~~~p~~~~~~ 240 (342)
+++|+.+.+.. .....+.+..+++.|+++|+++.+|+++.. ....+...+.++ +.+ .++|+..... .+
T Consensus 156 ~vvg~~l~~~e----~~~~~~~~~~~~~~A~~~g~~i~~Ha~E~~--~~~~~~~~~~~~-g~~-ri~Hg~~l~~---~~- 223 (324)
T TIGR01430 156 TIVGFGLAGDE----RGGPPPDFVRAFAIARELGLHLTVHAGELG--GPESVREALDDL-GAT-RIGHGVRALE---DP- 223 (324)
T ss_pred cEEEecCCCCC----CCCCHHHHHHHHHHHHHCCCCeEEecCCCC--ChHHHHHHHHHc-Cch-hcchhhhhcc---CH-
Confidence 47777776531 122356789999999999999999998641 223444444445 233 3678876311 10
Q ss_pred hHhHHHHhcccCCCcEEEecCcccccccCCCCCCCchhHHHHHHHhcCCCcEEEccCCCCCCCCCChHhHHHHHHHHHhc
Q 019335 241 SLAFSNLLKLSRFPQVYVKFSALFRVSRMPFPYQDLSSPLSQVVSSFGANRVMWGSDFPYVVPECGYKGGREAASLIANE 320 (342)
Q Consensus 241 ~~~~~~~~~l~~~~Nvy~~~S~~~~~~~~~~~~~~~~~~l~~~i~~~G~dRilfGSD~P~~~~~~~~~~~~~~~~~~~~~ 320 (342)
..++ .+++ .++.+.++..-.......+.... +-++++++. |. +|-.|||-|..... +. .+.+....+.
T Consensus 224 -~~i~---~l~~-~gi~v~~cP~Sn~~l~~~~~~~~-~pi~~l~~~-Gv-~v~igTD~~~~~~~-~l---~~e~~~a~~~ 291 (324)
T TIGR01430 224 -ELLK---RLAQ-ENITLEVCPTSNVALGVVKSLAE-HPLRRFLEA-GV-KVTLNSDDPAYFGS-YL---TEEYEIAAKH 291 (324)
T ss_pred -HHHH---HHHH-cCceEEECCcccccccccCCccc-ChHHHHHHC-CC-EEEECCCCCcccCC-CH---HHHHHHHHHH
Confidence 1111 1222 12333332211000000000001 236666655 55 78899998865432 22 2223233334
Q ss_pred CCCCHHHHHHHHhHHHHHhc
Q 019335 321 VPLSPSELEWIMGGTIMQLF 340 (342)
Q Consensus 321 ~~l~~~~~~~I~~~NA~rl~ 340 (342)
.+++.++..++..+.+...|
T Consensus 292 ~~l~~~el~~~~~na~~~~f 311 (324)
T TIGR01430 292 AGLTEEELKQLARNALEGSF 311 (324)
T ss_pred cCCCHHHHHHHHHHHHHHhC
Confidence 68999998887777666665
No 75
>PRK08393 N-ethylammeline chlorohydrolase; Provisional
Probab=97.36 E-value=0.081 Score=51.70 Aligned_cols=103 Identities=17% Similarity=0.165 Sum_probs=59.9
Q ss_pred cCCcHHHHHHHHHHhhhCCeEEEEeccCCCCCHHHHHHHHHhC-----------C--CCcEEecccCCCCCCCCchhhHh
Q 019335 177 QMTNEVGKAMFSKAGELGVPVGFMCMKGLNLHISEIEELCTEF-----------P--STTVLLDHLAFCKPPSNDEESLA 243 (342)
Q Consensus 177 ~l~~~~~~~~~~~a~e~~lpv~iH~~~~~~~~~~~l~~l~~~~-----------P--~lk~vl~H~G~~~p~~~~~~~~~ 243 (342)
..+++.++.+++.+.++|+++.+|+.++ ..++..+.++| - +-++++.|+.... .
T Consensus 185 ~~s~~~l~~~~~~A~~~g~~v~~H~~e~----~~~~~~~~~~~g~~~~~~l~~~G~l~~~~~~~H~~~l~----~----- 251 (424)
T PRK08393 185 TCSLALLKWVREKAREWNKLITIHLSET----MDEIKQIREKYGKSPVVLLDEIGFLNEDVIAAHGVWLS----S----- 251 (424)
T ss_pred cCCHHHHHHHHHHHHHcCCcEEEEeCCC----HHHHHHHHHHhCcCHHHHHHHcCCCCCCcEEEEeecCC----H-----
Confidence 3567899999999999999999999743 22333333322 1 4567889998632 1
Q ss_pred HHHHhcccCCCcEEEecCccccc-ccCCCCCCCchhHHHHHHHhcCCCcEEEccCCCCCC
Q 019335 244 FSNLLKLSRFPQVYVKFSALFRV-SRMPFPYQDLSSPLSQVVSSFGANRVMWGSDFPYVV 302 (342)
Q Consensus 244 ~~~~~~l~~~~Nvy~~~S~~~~~-~~~~~~~~~~~~~l~~~i~~~G~dRilfGSD~P~~~ 302 (342)
+++..+++. ++++..+..... ...+. .-++.+++. | -++.+|||.+...
T Consensus 252 -~~l~~la~~-g~~v~~~P~sn~~lg~g~------~~~~~~~~~-G-v~v~lGtD~~~~~ 301 (424)
T PRK08393 252 -RDIRILASA-GVTVAHNPASNMKLGSGV------MPLRKLLNA-G-VNVALGTDGAASN 301 (424)
T ss_pred -HHHHHHHhc-CCEEEECHHHHHhhccCC------CCHHHHHHC-C-CcEEEecCCCccC
Confidence 123333333 355544421100 01111 125666655 3 6999999987643
No 76
>PRK05985 cytosine deaminase; Provisional
Probab=97.35 E-value=0.027 Score=54.34 Aligned_cols=184 Identities=14% Similarity=0.049 Sum_probs=89.5
Q ss_pred HHHhHHCCCceEEE---eCCCCCccchHHHHHHHHhCCCcEE-EEEEcCCC---CcchHHHHHHHHHhcCCceEEEecCC
Q 019335 98 LQCMEEASVDGALI---VQPINHKFDHSLVTSVLKKYPSKFV-GCCLANPA---EDVIGIKQLEQLILKDGFRAVRFNPY 170 (342)
Q Consensus 98 l~~md~~GI~~~v~---~~~~~~~~~N~~~~~~~~~~p~r~~-g~~~i~p~---~~~~~~~eler~~~~~g~~Gvk~~~~ 170 (342)
+..|-+.|++..-- +.+......-+-++++.+.+.+++. -++.+.+. ......+.+++.++ .|. ++.-...
T Consensus 104 ~~~~l~~G~t~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~ll~~~l~-~g~-~~~gg~~ 181 (391)
T PRK05985 104 ARAAAAAGTTAMRSHVDVDPDAGLRHLEAVLAARETLRGLIDIQIVAFPQSGVLSRPGTAELLDAALR-AGA-DVVGGLD 181 (391)
T ss_pred HHHHHhcCcceEEeeEccCCCcccchHHHHHHHHHHhhCcccEEEEeccCccccCCcCHHHHHHHHHH-cCC-CEEeCCC
Confidence 45666789987522 2221111112445666666655432 12222221 11113455666643 343 2221111
Q ss_pred CCCCCCcCCcHHHHHHHHHHhhhCCeEEEEeccCCCCCHHHHHHHHH---hCC-CCcEEecccCCCCCCCCchhhHhHHH
Q 019335 171 LWPSGQQMTNEVGKAMFSKAGELGVPVGFMCMKGLNLHISEIEELCT---EFP-STTVLLDHLAFCKPPSNDEESLAFSN 246 (342)
Q Consensus 171 ~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH~~~~~~~~~~~l~~l~~---~~P-~lk~vl~H~G~~~p~~~~~~~~~~~~ 246 (342)
.. .-....++.+..+++.|.++|+++.+|+..........+..+++ ++. .-++.+.|+-... ... ...+.+
T Consensus 182 p~-~~~~~~~~~l~~~~~~A~~~g~~i~~Hv~e~~d~~~~~~~~~~e~~~~~g~~~~~~i~H~~~l~-~~~---~~~~~~ 256 (391)
T PRK05985 182 PA-GIDGDPEGQLDIVFGLAERHGVGIDIHLHEPGELGAFQLERIAARTRALGMQGRVAVSHAFCLG-DLP---EREVDR 256 (391)
T ss_pred CC-CcCCCHHHHHHHHHHHHHHhCCCcEEeeCCCCCccHHHHHHHHHHHHHhCCCCCEehhhhhhhh-cCC---HHHHHH
Confidence 00 01223457899999999999999999987542222233333333 332 1258999986521 111 122333
Q ss_pred Hhc-ccCCCcEEEecCcccccccCCCCCCCchhHHHHHHHhcCCCcEEEccCCCC
Q 019335 247 LLK-LSRFPQVYVKFSALFRVSRMPFPYQDLSSPLSQVVSSFGANRVMWGSDFPY 300 (342)
Q Consensus 247 ~~~-l~~~~Nvy~~~S~~~~~~~~~~~~~~~~~~l~~~i~~~G~dRilfGSD~P~ 300 (342)
.++ +++. ++.+-.... ...+ + .-++.+++. |. ++.+|||.+.
T Consensus 257 ~i~~lae~-g~~v~~~~~---~~~~-----~-~~~~~l~~~-Gv-~v~lGtD~~~ 299 (391)
T PRK05985 257 LAERLAEA-GVAIMTNAP---GSVP-----V-PPVAALRAA-GV-TVFGGNDGIR 299 (391)
T ss_pred HHHHHHHc-CCeEEEeCC---CCCC-----C-CCHHHHHHC-CC-eEEEecCCCC
Confidence 333 4443 344432211 0111 1 236666665 55 8999999754
No 77
>PRK12393 amidohydrolase; Provisional
Probab=97.35 E-value=0.11 Score=51.35 Aligned_cols=143 Identities=11% Similarity=0.059 Sum_probs=74.0
Q ss_pred CcCCcHHHHHHHHHHhhhCCeEEEEeccCCCCCHHHHHHHHHhCC-------------CCcEEecccCCCCCCCCchhhH
Q 019335 176 QQMTNEVGKAMFSKAGELGVPVGFMCMKGLNLHISEIEELCTEFP-------------STTVLLDHLAFCKPPSNDEESL 242 (342)
Q Consensus 176 ~~l~~~~~~~~~~~a~e~~lpv~iH~~~~~~~~~~~l~~l~~~~P-------------~lk~vl~H~G~~~p~~~~~~~~ 242 (342)
.....+.+..+++.+.++|+++.+|+.+. ..++....++++ +-++++.|+.... .+
T Consensus 213 ~~~~~e~l~~~~~~a~~~g~~~~~H~~e~----~~~~~~~~~~~g~~~~~~l~~~g~l~~~~~~~H~~~l~----~~--- 281 (457)
T PRK12393 213 FSLPPELLREVARAARGMGLRLHSHLSET----VDYVDFCREKYGMTPVQFVAEHDWLGPDVWFAHLVKLD----AE--- 281 (457)
T ss_pred CCcCHHHHHHHHHHHHHcCCeEEEEeCCC----HHHHHHHHHHhCCCHHHHHHHcCCCCCCeEEEEEecCC----HH---
Confidence 45567888999999999999999999743 233333333332 3357899998742 11
Q ss_pred hHHHHhcccCCCcEEEecCcccc-cccCCCCCCCchhHHHHHHHhcCCCcEEEccCCCCCCCCCChHhHHHHHHHHHh--
Q 019335 243 AFSNLLKLSRFPQVYVKFSALFR-VSRMPFPYQDLSSPLSQVVSSFGANRVMWGSDFPYVVPECGYKGGREAASLIAN-- 319 (342)
Q Consensus 243 ~~~~~~~l~~~~Nvy~~~S~~~~-~~~~~~~~~~~~~~l~~~i~~~G~dRilfGSD~P~~~~~~~~~~~~~~~~~~~~-- 319 (342)
.+ ..+++. ++.+-...... ....+ . .-++++++. |. ++.+|||.+......+.-...........
T Consensus 282 d~---~~la~~-g~~v~~~P~sn~~lg~g-----~-~~~~~~~~~-Gv-~v~lGtD~~~~~~~~d~~~~~~~a~~~~~~~ 349 (457)
T PRK12393 282 EI---ALLAQT-GTGIAHCPQSNGRLGSG-----I-APALAMEAA-GV-PVSLGVDGAASNESADMLSEAHAAWLLHRAE 349 (457)
T ss_pred HH---HHHHHc-CCeEEECchhhhhhccc-----C-CCHHHHHHC-CC-eEEEecCCcccCCCccHHHHHHHHHHHhhhc
Confidence 22 223322 12222111100 00111 1 236667665 54 79999998664221111111111000100
Q ss_pred --cCCCCHHHHHHHHhHHHHHhcC
Q 019335 320 --EVPLSPSELEWIMGGTIMQLFQ 341 (342)
Q Consensus 320 --~~~l~~~~~~~I~~~NA~rl~~ 341 (342)
...++.++.-+....|..++++
T Consensus 350 ~~~~~~~~~~~l~~~T~~~A~~l~ 373 (457)
T PRK12393 350 GGADATTVEDVVHWGTAGGARVLG 373 (457)
T ss_pred CCCCCCCHHHHHHHHhHHHHHHhC
Confidence 0136766666667777777664
No 78
>PRK15493 5-methylthioadenosine/S-adenosylhomocysteine deaminase; Provisional
Probab=97.32 E-value=0.069 Score=52.43 Aligned_cols=217 Identities=12% Similarity=0.040 Sum_probs=102.4
Q ss_pred HHHhHHCCCceEEEeCCCCCccchHHHHHHHHhCCCcE-EEEEEcCC---CCcchHHHHHHHHHhc----CCceEEEecC
Q 019335 98 LQCMEEASVDGALIVQPINHKFDHSLVTSVLKKYPSKF-VGCCLANP---AEDVIGIKQLEQLILK----DGFRAVRFNP 169 (342)
Q Consensus 98 l~~md~~GI~~~v~~~~~~~~~~N~~~~~~~~~~p~r~-~g~~~i~p---~~~~~~~~eler~~~~----~g~~Gvk~~~ 169 (342)
+.+|-+.|++..+-+... ....-+.+.+.+++-.=|. ++....+. ......+++.+++++. .+..-+.+.+
T Consensus 110 ~~e~l~~G~Ttv~d~~~~-~~~~~~~~~~a~~~~GiR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 188 (435)
T PRK15493 110 LLEMVKSGTTSFSDMFNP-IGVDQDAIMETVSRSGMRAAVSRTLFSFGTKEDEKKAIEEAEKYVKRYYNESGMLTTMVAP 188 (435)
T ss_pred HHHHHhCCccEEEccccc-cccCHHHHHHHHHHcCCcEEEeeeecCCCCCccHHHHHHHHHHHHHHhcCCCCCeEEEEeC
Confidence 446778899887643211 1112234555555544343 22223331 1222233444444322 1222222233
Q ss_pred CCCCCCCcCCcHHHHHHHHHHhhhCCeEEEEeccCCCCCHHHHH-----------HHHHhC--CCCcEEecccCCCCCCC
Q 019335 170 YLWPSGQQMTNEVGKAMFSKAGELGVPVGFMCMKGLNLHISEIE-----------ELCTEF--PSTTVLLDHLAFCKPPS 236 (342)
Q Consensus 170 ~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH~~~~~~~~~~~l~-----------~l~~~~--P~lk~vl~H~G~~~p~~ 236 (342)
.. ....+++.+..+.+.|.++|+++.+|+.+. ..++. +.+.++ -+-++++.|+....
T Consensus 189 ~~---~~t~s~e~l~~~~~~A~~~g~~v~~H~~e~----~~e~~~~~~~~g~~~~~~l~~~Gll~~~~~~~H~~~l~--- 258 (435)
T PRK15493 189 HS---PYTCSTELLEECARIAVENQTMVHIHLSET----EREVRDIEAQYGKRPVEYAASCGLFKRPTVIAHGVVLN--- 258 (435)
T ss_pred CC---CCcCCHHHHHHHHHHHHHcCCcEEEEeCCC----HHHHHHHHHHhCCCHHHHHHHcCCCCCCcEEEEeecCC---
Confidence 21 234567889999999999999999999753 11222 222222 24467889998732
Q ss_pred CchhhHhHHHHhcccCCCcEEEecCcccc-cccCCCCCCCchhHHHHHHHhcCCCcEEEccCCCCCCCCCC-hHhHHHH-
Q 019335 237 NDEESLAFSNLLKLSRFPQVYVKFSALFR-VSRMPFPYQDLSSPLSQVVSSFGANRVMWGSDFPYVVPECG-YKGGREA- 313 (342)
Q Consensus 237 ~~~~~~~~~~~~~l~~~~Nvy~~~S~~~~-~~~~~~~~~~~~~~l~~~i~~~G~dRilfGSD~P~~~~~~~-~~~~~~~- 313 (342)
++ .. ..+++. ++.+-...... ....+. .-++.+++. |. ++-+|||.+......+ +....-+
T Consensus 259 -~~---d~---~~la~~-g~~v~~~P~sn~~l~~g~------~p~~~~~~~-Gv-~v~lGtD~~~~~~~~d~~~~~~~a~ 322 (435)
T PRK15493 259 -DN---ER---AFLAEH-DVRVAHNPNSNLKLGSGI------ANVKAMLEA-GI-KVGIATDSVASNNNLDMFEEMRIAT 322 (435)
T ss_pred -HH---HH---HHHHHc-CCeEEEChHHHHHHhcCc------ccHHHHHHC-CC-eEEEccCccccCCCcCHHHHHHHHH
Confidence 11 12 223222 12221111100 001111 125566655 33 7899999854322112 1211110
Q ss_pred -HHHHH--hcCCCCHHHHHHHHhHHHHHhcC
Q 019335 314 -ASLIA--NEVPLSPSELEWIMGGTIMQLFQ 341 (342)
Q Consensus 314 -~~~~~--~~~~l~~~~~~~I~~~NA~rl~~ 341 (342)
+.... ....++.++.=+....|+.+.++
T Consensus 323 ~~~~~~~~~~~~~~~~~~l~~aT~~gA~~lg 353 (435)
T PRK15493 323 LLQKGIHQDATALPVETALTLATKGAAEVIG 353 (435)
T ss_pred HHHhhccCCCCcCCHHHHHHHHhHHHHHHcC
Confidence 11100 01246777666677788877764
No 79
>COG0044 PyrC Dihydroorotase and related cyclic amidohydrolases [Nucleotide transport and metabolism]
Probab=97.28 E-value=0.083 Score=51.67 Aligned_cols=248 Identities=13% Similarity=0.094 Sum_probs=131.6
Q ss_pred CeeeeeeeccCCCCccCCCCCCCCCCCCCCCCChHHHHHHhHHCCCceEEEeCCCCCccchHHHHH----HHH-hCCCcE
Q 019335 61 KIIDSHLHVWASPEEAADKFPYFPGQEPTLPGHVDFLLQCMEEASVDGALIVQPINHKFDHSLVTS----VLK-KYPSKF 135 (342)
Q Consensus 61 ~iID~H~Hl~~~~~~~~~~~p~~~~~~~~~~~~~~~ll~~md~~GI~~~v~~~~~~~~~~N~~~~~----~~~-~~p~r~ 135 (342)
..||.|+|+-.+.. - ...+.+.--+..-.-|++..+.++...-..++..+++ ..+ +..-.+
T Consensus 54 G~ID~HVH~repg~------~--------~ke~~~tgs~AAa~GG~Ttv~dmPnt~P~~~~~~~~~~~~~~a~~~~~vd~ 119 (430)
T COG0044 54 GLVDLHVHFREPGF------E--------HKETFETGSRAAAAGGVTTVVDMPNTKPPIDTAEALEDKLERAKGKSVVDY 119 (430)
T ss_pred CeeEEEEecCCCCc------c--------hhhhHHHHHHHHHcCCceEEEECCCCCCCCCCHHHHHHHHHHhhccceeEE
Confidence 68999999965421 0 1233444444555678888887753222222322222 222 111134
Q ss_pred EEEEEcCCCCcchHHHHHHHHHhcCCceEEEecCCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEEeccCC----------
Q 019335 136 VGCCLANPAEDVIGIKQLEQLILKDGFRAVRFNPYLWPSGQQMTNEVGKAMFSKAGELGVPVGFMCMKGL---------- 205 (342)
Q Consensus 136 ~g~~~i~p~~~~~~~~eler~~~~~g~~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH~~~~~---------- 205 (342)
...+.+...... ..+++++.. ..|++++.-.. +..++...++..++++.+.|.++.+|+-+..
T Consensus 120 ~~~~~it~~~~~-~~~~~~~~~-~~g~~~F~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~H~Ed~~~~~~~~~~~g 192 (430)
T COG0044 120 AFYGGLTKGNLG-KLELTERGV-EAGFKGFMDDS-----TGALDDDVLEEALEYAAELGALILVHAEDDDLIAEGVMNEG 192 (430)
T ss_pred EEEEEEeccccc-hhhhhhhhh-ccceEEEecCC-----cCcCCHHHHHHHHHHHHhcCCeEEEecCChhHhhhHHHhcC
Confidence 444555554432 223444442 44555443221 2456788999999999999999999985431
Q ss_pred -----------CC-----CHHHHHHHHHhCCCCcEEecccCCCCCCCCchhhHhHHHHhccc--CCCcEEEecCcccccc
Q 019335 206 -----------NL-----HISEIEELCTEFPSTTVLLDHLAFCKPPSNDEESLAFSNLLKLS--RFPQVYVKFSALFRVS 267 (342)
Q Consensus 206 -----------~~-----~~~~l~~l~~~~P~lk~vl~H~G~~~p~~~~~~~~~~~~~~~l~--~~~Nvy~~~S~~~~~~ 267 (342)
+. .+.....+++.+ +.++.+.|.... +. .+ +++-+ ..-+|.++++.-....
T Consensus 193 ~~~~~~~~~~~p~~aE~~~iar~~~la~~~-g~~vhi~HiSt~------~s---v~-li~~ak~~g~~vt~EvtphHL~l 261 (430)
T COG0044 193 LRAPELGLAGRPPIAEASAIARDLELARAT-GARVHICHISTK------ES---VE-LIRAAKAEGIRVTAEVTPHHLLL 261 (430)
T ss_pred ccchhhccCCCChHHHHHHHHHHHHHHHHh-CCcEEEEEcCCH------HH---HH-HHHHHhhcCCceEEeecchheEc
Confidence 00 012345566666 488999999862 11 11 11111 1235666665322110
Q ss_pred ------------cCCCCCCCchhHHHHHHHhcCCCcE-EEccC-CCCCCCCCC--h----------HhHHHHHHHHHhcC
Q 019335 268 ------------RMPFPYQDLSSPLSQVVSSFGANRV-MWGSD-FPYVVPECG--Y----------KGGREAASLIANEV 321 (342)
Q Consensus 268 ------------~~~~~~~~~~~~l~~~i~~~G~dRi-lfGSD-~P~~~~~~~--~----------~~~~~~~~~~~~~~ 321 (342)
....|.. ...--..+++.+-...| +.+|| .|+...+.. | +..+..+..+.+..
T Consensus 262 ~~~~~~~~~~~~k~nPPLR-~~~dr~aL~~~l~~G~ID~iasDHaPht~eeK~~~f~~ap~G~~glE~~lpl~l~lv~~g 340 (430)
T COG0044 262 DEEDIEDLGTLAKVNPPLR-DEEDREALWEALKDGVIDVIASDHAPHTLEEKRLPFEEAPSGIPGLETALPLLLTLVKKG 340 (430)
T ss_pred cHhHhhccCcceEECCCCC-CHHHHHHHHHHHhCCCCcEEEcCCCCCCHHHhccchhhCCCCCccHHHHHHHHHHHHHcC
Confidence 0112322 22334445555522334 67888 577654321 1 12222222233345
Q ss_pred CCCHHHHHHHHhHHHHHhcC
Q 019335 322 PLSPSELEWIMGGTIMQLFQ 341 (342)
Q Consensus 322 ~l~~~~~~~I~~~NA~rl~~ 341 (342)
.++-++.-+.++.|..|+|+
T Consensus 341 ~lsl~~~v~~~S~nPA~ifg 360 (430)
T COG0044 341 RLSLERLVELLSTNPARIFG 360 (430)
T ss_pred CcCHHHHHHHHhhCHHHHhC
Confidence 69999999999999999997
No 80
>PRK09060 dihydroorotase; Validated
Probab=97.25 E-value=0.078 Score=52.20 Aligned_cols=246 Identities=13% Similarity=0.080 Sum_probs=118.9
Q ss_pred CeeeeeeeccCCCCccCCCCCCCCCCCCCCCCChHHHHHHhHHCCCceEEEeCCCCCccch-HHHHHHHHhCCC----cE
Q 019335 61 KIIDSHLHVWASPEEAADKFPYFPGQEPTLPGHVDFLLQCMEEASVDGALIVQPINHKFDH-SLVTSVLKKYPS----KF 135 (342)
Q Consensus 61 ~iID~H~Hl~~~~~~~~~~~p~~~~~~~~~~~~~~~ll~~md~~GI~~~v~~~~~~~~~~N-~~~~~~~~~~p~----r~ 135 (342)
-.||+|+|+..+. +. ...+....-+.+-..||+..+.++......++ +.+....++..+ .+
T Consensus 57 G~ID~HvH~~~~~------~~--------~~e~~~t~~~aa~~gGvTtv~~~p~~~p~~~~~~~~~~~~~~a~~~~~~d~ 122 (444)
T PRK09060 57 GVIDSQVHFREPG------LE--------HKEDLETGSRAAVLGGVTAVFEMPNTNPLTTTAEALADKLARARHRMHCDF 122 (444)
T ss_pred CEEeccccccCCC------CC--------ccchHHHHHHHHHhCCcEEEEECCCCCCCCChHHHHHHHHHHhcccceeeE
Confidence 5899999986431 00 12355555666778899998887532111222 222222222211 22
Q ss_pred EEEEEcCCCCcchHHHHHHHHHhcCCceEEEecCCCCCCCCcCC-cHHHHHHHHHHhhhCCeEEEEeccC----------
Q 019335 136 VGCCLANPAEDVIGIKQLEQLILKDGFRAVRFNPYLWPSGQQMT-NEVGKAMFSKAGELGVPVGFMCMKG---------- 204 (342)
Q Consensus 136 ~g~~~i~p~~~~~~~~eler~~~~~g~~Gvk~~~~~~~~g~~l~-~~~~~~~~~~a~e~~lpv~iH~~~~---------- 204 (342)
...+...... .+++.++....|+.|++............. +..+..++ ++.|.+|.+|+-+.
T Consensus 123 ~~~~~~~~~~----~~~l~el~~~~gv~g~k~fm~~~~~~~~~~d~~~l~~~~---~~~~~~v~~H~E~~~l~~~~~~~~ 195 (444)
T PRK09060 123 AFYVGGTRDN----ADELAELERLPGCAGIKVFMGSSTGDLLVEDDEGLRRIL---RNGRRRAAFHSEDEYRLRERKGLR 195 (444)
T ss_pred EEEeccCCCC----HHHHHHHHhhcCceEEEEEeccCCCCcccCCHHHHHHHH---HhCCCeEEEECCCHHHHHHHHHHH
Confidence 2222222221 134444433458889886532111112233 33455554 44599999997321
Q ss_pred ---C-----CC--------CHHHHHHHHHhCCCCcEEecccCCCCCCCCchhhHhHHHHhcccCCCcEEEecCccccc-c
Q 019335 205 ---L-----NL--------HISEIEELCTEFPSTTVLLDHLAFCKPPSNDEESLAFSNLLKLSRFPQVYVKFSALFRV-S 267 (342)
Q Consensus 205 ---~-----~~--------~~~~l~~l~~~~P~lk~vl~H~G~~~p~~~~~~~~~~~~~~~l~~~~Nvy~~~S~~~~~-~ 267 (342)
. .. .+..+..+++.. +.++.+.|.... + ..+.+.+ ++ ..+.++++.-+.. +
T Consensus 196 ~~g~~~~~~~~~p~~aE~~av~~~~~la~~~-~~~lhi~h~st~------~---~v~~i~~-~~-~~vt~ev~ph~l~l~ 263 (444)
T PRK09060 196 VEGDPSSHPVWRDEEAALLATRRLVRLARET-GRRIHVLHVSTA------E---EIDFLAD-HK-DVATVEVTPHHLTLA 263 (444)
T ss_pred hcCCcccccccCCHHHHHHHHHHHHHHHHHH-CCCEEEEeCCCH------H---HHHHHHH-hC-CCeEEEeChHHhccC
Confidence 0 00 012345566655 789989999862 1 1111111 11 1366666431110 0
Q ss_pred ------------cCCCCCCCchhHHHHHHHhc--CCCcEEEccC-CCCCCCCC------------ChHhHHHHHHHHHhc
Q 019335 268 ------------RMPFPYQDLSSPLSQVVSSF--GANRVMWGSD-FPYVVPEC------------GYKGGREAASLIANE 320 (342)
Q Consensus 268 ------------~~~~~~~~~~~~l~~~i~~~--G~dRilfGSD-~P~~~~~~------------~~~~~~~~~~~~~~~ 320 (342)
....|... ......+++.+ |.=- +.||| +|+...+. +.......+......
T Consensus 264 ~~~~~~~~~~~~k~~PPlr~-~~~~~~l~~al~~G~id-~i~sDh~p~~~~~k~~~~~~~~~G~~g~e~~~~l~~~~v~~ 341 (444)
T PRK09060 264 APECYERLGTLAQMNPPIRD-ARHRDGLWRGVRQGVVD-VLGSDHAPHTLEEKAKPYPASPSGMTGVQTLVPIMLDHVNA 341 (444)
T ss_pred chhhcccCCceEEEeCCCCC-HHHHHHHHHHHhCCCcc-EEecCCCCCCHHHhcCCcccCCCCcccHHHHHHHHHHHHHc
Confidence 00112222 12223344443 4333 38999 57643211 111112222212222
Q ss_pred CCCCHHHHHHHHhHHHHHhcC
Q 019335 321 VPLSPSELEWIMGGTIMQLFQ 341 (342)
Q Consensus 321 ~~l~~~~~~~I~~~NA~rl~~ 341 (342)
..++.+..-+.+..|..++|+
T Consensus 342 g~l~~~~~~~~~s~~pa~~~g 362 (444)
T PRK09060 342 GRLSLERFVDLTSAGPARIFG 362 (444)
T ss_pred CCCCHHHHHHHHhHhHHHHhC
Confidence 358999999999999999986
No 81
>PRK07213 chlorohydrolase; Provisional
Probab=97.21 E-value=0.1 Score=50.12 Aligned_cols=209 Identities=11% Similarity=0.034 Sum_probs=97.5
Q ss_pred HHHhHHCCCceEEEeCCCCCccchHHHHHHHHhCCCcEEEEEEcCCCC-cchHHHHHHHHHhcCCceEEEecCCCCCCCC
Q 019335 98 LQCMEEASVDGALIVQPINHKFDHSLVTSVLKKYPSKFVGCCLANPAE-DVIGIKQLEQLILKDGFRAVRFNPYLWPSGQ 176 (342)
Q Consensus 98 l~~md~~GI~~~v~~~~~~~~~~N~~~~~~~~~~p~r~~g~~~i~p~~-~~~~~~eler~~~~~g~~Gvk~~~~~~~~g~ 176 (342)
+.+|-+.|++..+-+.... ....+.+.+.++..+-|...+ ..++.+ ++...+.+++.++. ..|+..+. ..
T Consensus 104 ~~e~l~~G~Ttv~D~~~~~-~~~~~~~~~a~~~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~--~~g~~~~~-----~~ 174 (375)
T PRK07213 104 LYDMYNNGIKAFCDFREGG-IKGINLLKKASSDLPIKPIIL-GRPTEADENELKKEIREILKN--SDGIGLSG-----AN 174 (375)
T ss_pred HHHHHHcCCeEEEEhhhcC-hhHHHHHHHHHHcCCCceEEe-cCCCcccchhhHHHHHHHHHh--cccccccc-----cc
Confidence 4466678998655432111 111223455555544333211 112111 22233344444321 22333221 12
Q ss_pred cCCcHHHHHHHHHHhhhCCeEEEEeccCCCCC--------HHHHHHHHHhCCCCc-EEecccCCCCCCCCchhhHhHHHH
Q 019335 177 QMTNEVGKAMFSKAGELGVPVGFMCMKGLNLH--------ISEIEELCTEFPSTT-VLLDHLAFCKPPSNDEESLAFSNL 247 (342)
Q Consensus 177 ~l~~~~~~~~~~~a~e~~lpv~iH~~~~~~~~--------~~~l~~l~~~~P~lk-~vl~H~G~~~p~~~~~~~~~~~~~ 247 (342)
....+.+..+++.|.++|++|.+|+.+..... ...+.. +.++ ++. -++.|+-... + .. +
T Consensus 175 ~~s~~~l~~~~~~A~~~g~~v~~H~~e~~~e~~~~~~~~G~~~v~~-~~~~-G~~~~~i~H~~~~~----~---~~---i 242 (375)
T PRK07213 175 EYSDEELKFICKECKREKKIFSIHAAEHKGSVEYSLEKYGMTEIER-LINL-GFKPDFIVHATHPS----N---DD---L 242 (375)
T ss_pred cCCHHHHHHHHHHHHHcCCEEEEeeCCchhHHHHHHHHcCCChHHH-HHhc-CCCCCEEEECCCCC----H---HH---H
Confidence 45677899999999999999999997532110 001222 2222 121 1368987631 1 12 2
Q ss_pred hcccCCC-cEEEe-cCcccccccCCCCCCCchhHHHHHHHhcCCCcEEEccCCCCCCCCCChHhHHHHHHHHHhcCCCCH
Q 019335 248 LKLSRFP-QVYVK-FSALFRVSRMPFPYQDLSSPLSQVVSSFGANRVMWGSDFPYVVPECGYKGGREAASLIANEVPLSP 325 (342)
Q Consensus 248 ~~l~~~~-Nvy~~-~S~~~~~~~~~~~~~~~~~~l~~~i~~~G~dRilfGSD~P~~~~~~~~~~~~~~~~~~~~~~~l~~ 325 (342)
..+++.. .+..- .|.... ..+. +-++++++. |. ++-+|||.+.... ....+.++......+++.
T Consensus 243 ~~la~~g~~v~~~P~sn~~l--~~g~------~~v~~l~~~-Gv-~v~lGTD~~~~~~----~~~~~e~~~~~~~~~~~~ 308 (375)
T PRK07213 243 ELLKENNIPVVVCPRANASF--NVGL------PPLNEMLEK-GI-LLGIGTDNFMANS----PSIFREMEFIYKLYHIEP 308 (375)
T ss_pred HHHHHcCCcEEECCcchhhh--ccCC------ccHHHHHHC-CC-EEEEeeCCCCCch----HhHHHHHHHHHHHhCcCH
Confidence 2233221 12211 121111 1111 235666655 54 8999999754321 122233332222346787
Q ss_pred HHHHHHHhHHHHHhcC
Q 019335 326 SELEWIMGGTIMQLFQ 341 (342)
Q Consensus 326 ~~~~~I~~~NA~rl~~ 341 (342)
++.-+....|..+.++
T Consensus 309 ~~~l~~aT~~gA~~lg 324 (375)
T PRK07213 309 KEILKMATINGAKILG 324 (375)
T ss_pred HHHHHHHHHHHHHHhC
Confidence 7666666677777654
No 82
>PRK08204 hypothetical protein; Provisional
Probab=97.19 E-value=0.16 Score=49.98 Aligned_cols=55 Identities=24% Similarity=0.077 Sum_probs=36.4
Q ss_pred cCCcHHHHHHHHHHhhhCCeEEEEeccCCC-CCHHHHHHHHHhC--CCCcEEecccCCC
Q 019335 177 QMTNEVGKAMFSKAGELGVPVGFMCMKGLN-LHISEIEELCTEF--PSTTVLLDHLAFC 232 (342)
Q Consensus 177 ~l~~~~~~~~~~~a~e~~lpv~iH~~~~~~-~~~~~l~~l~~~~--P~lk~vl~H~G~~ 232 (342)
...++.+..+++.|.++|++|.+|+.++.. ... ...+.+.+. .+.++++.|+...
T Consensus 197 ~~~~e~l~~~~~~A~~~g~~v~~H~~e~~~~~~~-~~~~~l~~~g~~~~~~~i~H~~~~ 254 (449)
T PRK08204 197 FSSWEVARADFRLARELGLPISMHQGFGPWGATP-RGVEQLHDAGLLGPDLNLVHGNDL 254 (449)
T ss_pred cCCHHHHHHHHHHHHHcCCcEEEEEcCCCcccCC-CHHHHHHHCCCCCCCeEEEecCCC
Confidence 345677889999999999999999964311 111 122233333 3567899999874
No 83
>cd01309 Met_dep_hydrolase_C Metallo-dependent hydrolases, subgroup C is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=97.19 E-value=0.0035 Score=59.94 Aligned_cols=141 Identities=14% Similarity=0.109 Sum_probs=83.6
Q ss_pred CcHHHHHHHHHHhhhCCeEEEEeccCCCCCHHHHHHHHHhCCCCcEEecccCCCCCCCCchhhHhHHHHhcccCCCcEEE
Q 019335 179 TNEVGKAMFSKAGELGVPVGFMCMKGLNLHISEIEELCTEFPSTTVLLDHLAFCKPPSNDEESLAFSNLLKLSRFPQVYV 258 (342)
Q Consensus 179 ~~~~~~~~~~~a~e~~lpv~iH~~~~~~~~~~~l~~l~~~~P~lk~vl~H~G~~~p~~~~~~~~~~~~~~~l~~~~Nvy~ 258 (342)
.++.++.+++.+... +||.+|+... ..+..+.+++++| ++++++.|++.. |..+..+++. |+++
T Consensus 178 ~d~~l~~l~~~~~~~-~~v~vHa~~~--~~i~~~l~~~~e~-g~~~~i~H~~~~-----------~~~~~~la~~-gv~v 241 (359)
T cd01309 178 RDLKLEALLPVLKGE-IPVRIHAHRA--DDILTAIRIAKEF-GIKITIEHGAEG-----------YKLADELAKH-GIPV 241 (359)
T ss_pred CCccHHHHHHHHcCC-eeEEEEeCCH--HHHHHHHHHHHHc-CCCEEEECchhH-----------HHHHHHHHHc-CCCE
Confidence 567788888888755 9999998742 3456677888888 688999999752 3333334433 5666
Q ss_pred ecCcccccccCCCCCCCchhHHHHHHHhcCCCcEEEccCCCCCCCCCChHhHHHHHHHHHhcCCCCHHHHHHHHhHHHHH
Q 019335 259 KFSALFRVSRMPFPYQDLSSPLSQVVSSFGANRVMWGSDFPYVVPECGYKGGREAASLIANEVPLSPSELEWIMGGTIMQ 338 (342)
Q Consensus 259 ~~S~~~~~~~~~~~~~~~~~~l~~~i~~~G~dRilfGSD~P~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~I~~~NA~r 338 (342)
.+...................+..+.+. |-=++.+|||+|+.... ... ..+. +....+++.++.-+.+..|+.+
T Consensus 242 ~~~P~~~~~~~~~~~~~~~~~~~~l~~a-GGv~valgsD~~~~~~~-~l~---~~~~-~a~~~gl~~~~al~~~T~n~A~ 315 (359)
T cd01309 242 IYGPTLTLPKKVEEVNDAIDTNAYLLKK-GGVAFAISSDHPVLNIR-NLN---LEAA-KAVKYGLSYEEALKAITINPAK 315 (359)
T ss_pred EECccccccccHHHhhcchhhHHHHHHc-CCceEEEECCCCCccch-hHH---HHHH-HHHHcCCCHHHHHHHHHHHHHH
Confidence 5543321100000000011223344443 43469999999875332 111 1111 1123578998888889999999
Q ss_pred hcC
Q 019335 339 LFQ 341 (342)
Q Consensus 339 l~~ 341 (342)
+++
T Consensus 316 ~lg 318 (359)
T cd01309 316 ILG 318 (359)
T ss_pred HhC
Confidence 885
No 84
>PRK08323 phenylhydantoinase; Validated
Probab=97.13 E-value=0.32 Score=47.96 Aligned_cols=127 Identities=9% Similarity=0.045 Sum_probs=69.9
Q ss_pred CeeeeeeeccCCCCccCCCCCCCCCCCCCCCCChHHHHHHhHHCCCceEEEeCCCCCccchHHHHHHHHh-CCC-cEE--
Q 019335 61 KIIDSHLHVWASPEEAADKFPYFPGQEPTLPGHVDFLLQCMEEASVDGALIVQPINHKFDHSLVTSVLKK-YPS-KFV-- 136 (342)
Q Consensus 61 ~iID~H~Hl~~~~~~~~~~~p~~~~~~~~~~~~~~~ll~~md~~GI~~~v~~~~~~~~~~N~~~~~~~~~-~p~-r~~-- 136 (342)
-.||+|+|+..+. . +.. ...+.....+.+-..||+..+.+............++...+ ... -..
T Consensus 50 GlID~H~H~~~~~---------~-~~~--~~e~~~~~~~~a~~~GvTt~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 117 (459)
T PRK08323 50 GGIDPHTHMEMPF---------G-GTV--SSDDFETGTRAAACGGTTTIIDFALQPKGQSLREALEAWHGKAAGKAVIDY 117 (459)
T ss_pred cEEeeeecccccc---------C-Ccc--ccCcHHHHHHHHHhCCCCEEEeCcCCCCCCChHHHHHHHHHHhccCceEEE
Confidence 5899999986321 0 000 01223333334447899998876422111122222222221 111 111
Q ss_pred EE-EEcCCCCcchHHHHHHHHHhcCCceEEEecCCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEEec
Q 019335 137 GC-CLANPAEDVIGIKQLEQLILKDGFRAVRFNPYLWPSGQQMTNEVGKAMFSKAGELGVPVGFMCM 202 (342)
Q Consensus 137 g~-~~i~p~~~~~~~~eler~~~~~g~~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH~~ 202 (342)
++ ..+.. ...+.++++++++ +.|..++++..... .....+++.+...++.|.++|++|.+|+.
T Consensus 118 ~~~~~~~~-~~~~~~~~~~~~~-~~g~~~ik~~~~~~-~~~~~s~~~l~~~~~~a~~~g~~v~~H~e 181 (459)
T PRK08323 118 GFHMIITD-WNEVVLDEMPELV-EEGITSFKLFMAYK-GALMLDDDELLRALQRAAELGALPMVHAE 181 (459)
T ss_pred EEEEEecC-CcHHHHHHHHHHH-HcCCCEEEEEEecC-CCCCCCHHHHHHHHHHHHhcCCEEEEEcC
Confidence 22 11211 1233567888875 57888888764321 12456778999999999999999999974
No 85
>PRK09236 dihydroorotase; Reviewed
Probab=97.12 E-value=0.32 Score=47.87 Aligned_cols=248 Identities=11% Similarity=0.026 Sum_probs=119.8
Q ss_pred CeeeeeeeccCCCCccCCCCCCCCCCCCCCCCChHHHHHHhHHCCCceEEEeCCC-CCccchHHHHHHHHh-CCCcEE--
Q 019335 61 KIIDSHLHVWASPEEAADKFPYFPGQEPTLPGHVDFLLQCMEEASVDGALIVQPI-NHKFDHSLVTSVLKK-YPSKFV-- 136 (342)
Q Consensus 61 ~iID~H~Hl~~~~~~~~~~~p~~~~~~~~~~~~~~~ll~~md~~GI~~~v~~~~~-~~~~~N~~~~~~~~~-~p~r~~-- 136 (342)
-.||+|+|+..+.. . ...+.+..-+..-..||+..+.++.. ......+.+....+. .....+
T Consensus 55 G~ID~HvH~~~~~~------~--------~~e~~~~~~~aa~~~GvTtv~d~p~~~p~~~~~~~~~~~~~~~~~~~~~d~ 120 (444)
T PRK09236 55 GMIDDQVHFREPGL------T--------HKGDIASESRAAVAGGITSFMEMPNTNPPTTTLEALEAKYQIAAQRSLANY 120 (444)
T ss_pred CEEEcccccccCcc------c--------ccccHHHHHHHHHhCCcEEEEeCCCCCCCcCcHHHHHHHHHHhccCeEEEE
Confidence 58999999864310 0 01234444556667899999887532 122222222222222 122222
Q ss_pred EEE-EcCCCCcchHHHHHHHHHhcCCceEEEecCCCCCCCCcCCcH-HHHHHHHHHhhhCCeEEEEeccC----------
Q 019335 137 GCC-LANPAEDVIGIKQLEQLILKDGFRAVRFNPYLWPSGQQMTNE-VGKAMFSKAGELGVPVGFMCMKG---------- 204 (342)
Q Consensus 137 g~~-~i~p~~~~~~~~eler~~~~~g~~Gvk~~~~~~~~g~~l~~~-~~~~~~~~a~e~~lpv~iH~~~~---------- 204 (342)
++. .+.+. ..+++.+++ +.|..|+|...........+.+. .+..+ +++.+++|.+|+.+.
T Consensus 121 ~~~~~~~~~----~~~e~~~l~-~~g~~g~k~~~~~~~~~~~~~~~~~~~~~---~~~~~~~v~~H~e~~~~~~~~~~~~ 192 (444)
T PRK09236 121 SFYFGATND----NLDEIKRLD-PKRVCGVKVFMGASTGNMLVDNPETLERI---FRDAPTLIATHCEDTPTIKANLAKY 192 (444)
T ss_pred EEEeccCcc----cHHHHHHHH-HccCcEEEEEeccCCCCcccCcHHHHHHH---HHhcCCEEEEecCCHHHHHHHHHHH
Confidence 222 22222 256777774 56888888764321111123332 34444 455689999998521
Q ss_pred -----CC--------C--------CHHHHHHHHHhCCCCcEEecccCCCCCCCCchhhHhHHHHhcccCCCcEEEecCcc
Q 019335 205 -----LN--------L--------HISEIEELCTEFPSTTVLLDHLAFCKPPSNDEESLAFSNLLKLSRFPQVYVKFSAL 263 (342)
Q Consensus 205 -----~~--------~--------~~~~l~~l~~~~P~lk~vl~H~G~~~p~~~~~~~~~~~~~~~l~~~~Nvy~~~S~~ 263 (342)
.. . ....+..+++++ ++++.+.|.... +.....++. -.+..+++++++.-
T Consensus 193 ~~~~g~~~~~~~~~~~rp~~ae~~av~~~~~la~~~-~~~~hi~h~st~------~~~~~i~~~--~~~g~~vt~e~~~H 263 (444)
T PRK09236 193 KEKYGDDIPAEMHPLIRSAEACYKSSSLAVSLAKKH-GTRLHVLHISTA------KELSLFENG--PLAEKRITAEVCVH 263 (444)
T ss_pred HHhcCCCCChhhccccCCHHHHHHHHHHHHHHHHHH-CCCEEEEeCCCH------HHHHHHHHH--HHCCCCEEEEEchh
Confidence 00 0 012345566665 688888888752 111111111 11344566665542
Q ss_pred ccc-cc-----------CCCCCCC--chhHHHHHHHhcCCCcEEEccCC-CCCCCCC------------ChHhHHHHHHH
Q 019335 264 FRV-SR-----------MPFPYQD--LSSPLSQVVSSFGANRVMWGSDF-PYVVPEC------------GYKGGREAASL 316 (342)
Q Consensus 264 ~~~-~~-----------~~~~~~~--~~~~l~~~i~~~G~dRilfGSD~-P~~~~~~------------~~~~~~~~~~~ 316 (342)
+.. +. ...|... ....+.++++. |. ....|||. |+...+. ........+..
T Consensus 264 ~l~l~~~~~~~~~~~~~~~Pplr~~~~~~~l~~~l~~-G~-i~~igtDh~p~~~~~k~~~~~~~~~G~~~~e~~l~~l~~ 341 (444)
T PRK09236 264 HLWFDDSDYARLGNLIKCNPAIKTASDREALRQALAD-DR-IDVIATDHAPHTWEEKQGPYFQAPSGLPLVQHALPALLE 341 (444)
T ss_pred hhhcCHHHHhccCceEEECCCCCCHHHHHHHHHHHhC-CC-CcEEECCCCCCCHHHhcCCcccCCCCcccHHHHHHHHHH
Confidence 111 00 0111111 11234444443 43 55899995 5531100 11111111112
Q ss_pred HHhcCCCCHHHHHHHHhHHHHHhcC
Q 019335 317 IANEVPLSPSELEWIMGGTIMQLFQ 341 (342)
Q Consensus 317 ~~~~~~l~~~~~~~I~~~NA~rl~~ 341 (342)
......++.++.-+.+..|..++|+
T Consensus 342 ~v~~~~~~~~~~~~~~t~~pA~~lg 366 (444)
T PRK09236 342 LVHEGKLSLEKVVEKTSHAPAILFD 366 (444)
T ss_pred HHHhcCCCHHHHHHHHHHhHHHhcC
Confidence 2223578999999999999999986
No 86
>PRK09358 adenosine deaminase; Provisional
Probab=97.11 E-value=0.19 Score=47.51 Aligned_cols=164 Identities=18% Similarity=0.177 Sum_probs=82.7
Q ss_pred hHHHHHHHHHh---cCCceEEEecCCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEEeccCCCCCHHHHHHHHHhCCCCcE
Q 019335 148 IGIKQLEQLIL---KDGFRAVRFNPYLWPSGQQMTNEVGKAMFSKAGELGVPVGFMCMKGLNLHISEIEELCTEFPSTTV 224 (342)
Q Consensus 148 ~~~~eler~~~---~~g~~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH~~~~~~~~~~~l~~l~~~~P~lk~ 224 (342)
.+.+.+++++. ..+++|+.+.... .....+.+.++++.|.++|+++.+|+++.. ....+...++.+ +..
T Consensus 150 ~~~~~~~~~~~~~~~~~vvg~~l~g~e----~~~~~~~~~~~~~~A~~~g~~~~~H~~E~~--~~~~~~~al~~l-g~~- 221 (340)
T PRK09358 150 AAARELEALAARYRDDGVVGFDLAGDE----LGFPPSKFARAFDRARDAGLRLTAHAGEAG--GPESIWEALDEL-GAE- 221 (340)
T ss_pred HHHHHHHHHHHHhcCCcEEEEeCCCcC----CCCCHHHHHHHHHHHHHCCCCeEEcCCCCC--chhHHHHHHHHc-CCc-
Confidence 34555565543 2457888765321 123456789999999999999999998642 223444444433 222
Q ss_pred EecccCCCCCCCCchhhHhHHHHhcccCCCcEEEecCcccccccCCCCCCCchhHHHHHHHhcCCCcEEEccCCCCCCCC
Q 019335 225 LLDHLAFCKPPSNDEESLAFSNLLKLSRFPQVYVKFSALFRVSRMPFPYQDLSSPLSQVVSSFGANRVMWGSDFPYVVPE 304 (342)
Q Consensus 225 vl~H~G~~~p~~~~~~~~~~~~~~~l~~~~Nvy~~~S~~~~~~~~~~~~~~~~~~l~~~i~~~G~dRilfGSD~P~~~~~ 304 (342)
.++|+..... .+ ...+ .+++. ++.+..+..-.......+.... .-++++++. |. +|-.|||-|.....
T Consensus 222 ri~Hg~~l~~---~~--~~~~---~l~~~-gi~v~~cP~Sn~~l~~~~~~~~-~pi~~l~~~-Gv-~v~lgTD~~~~~~~ 289 (340)
T PRK09358 222 RIGHGVRAIE---DP--ALMA---RLADR-RIPLEVCPTSNVQTGAVPSLAE-HPLKTLLDA-GV-RVTINTDDPLVFGT 289 (340)
T ss_pred ccchhhhhcc---CH--HHHH---HHHHc-CCeEEECCCccccccccCCccc-ChHHHHHHC-CC-EEEECCCCCcccCC
Confidence 2588876321 11 1111 12222 2444333211000000000001 225666655 55 88899998865332
Q ss_pred CChHhHHHHHHHHHhcCCCCHHHHHHHHhHHH
Q 019335 305 CGYKGGREAASLIANEVPLSPSELEWIMGGTI 336 (342)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~l~~~~~~~I~~~NA 336 (342)
+. .+.+..+.+..+++.++..++. .|+
T Consensus 290 -~l---~~e~~~~~~~~~l~~~el~~l~-~na 316 (340)
T PRK09358 290 -TL---TEEYEALAEAFGLSDEDLAQLA-RNA 316 (340)
T ss_pred -CH---HHHHHHHHHHhCCCHHHHHHHH-HHH
Confidence 22 2222223333477777766653 444
No 87
>PRK13207 ureC urease subunit alpha; Reviewed
Probab=97.06 E-value=0.016 Score=58.22 Aligned_cols=72 Identities=21% Similarity=0.147 Sum_probs=51.0
Q ss_pred HHHHHHHHHhcCCceEEEecCCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEEeccCCCCCHHHHHHHHHhCCCCcEEecc
Q 019335 149 GIKQLEQLILKDGFRAVRFNPYLWPSGQQMTNEVGKAMFSKAGELGVPVGFMCMKGLNLHISEIEELCTEFPSTTVLLDH 228 (342)
Q Consensus 149 ~~~eler~~~~~g~~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH~~~~~~~~~~~l~~l~~~~P~lk~vl~H 228 (342)
..+++++.+ +.|+.|+|++..+ + .+.+.++..++.|.++|++|.+|+....... .++.-++..-+-.+-+.|
T Consensus 202 ~~~~L~e~i-~aGA~gfKi~~d~---g--~t~~~l~~aL~~A~~~gv~V~iHa~tlne~G--~~e~t~~a~~g~~iH~~H 273 (568)
T PRK13207 202 LPEALEEQI-EAGAIGLKLHEDW---G--ATPAAIDNCLSVADEYDVQVAIHTDTLNESG--FVEDTIAAFKGRTIHTFH 273 (568)
T ss_pred cHHHHHHHH-HcCCCEEeecCCC---C--CCHHHHHHHHHHHHHhCCEEEEeCCCcccch--HHHHHHHhcCCCEEEEEe
Confidence 457788774 6799999988542 2 4678999999999999999999997432221 233345555566666666
No 88
>PRK06846 putative deaminase; Validated
Probab=96.96 E-value=0.051 Score=52.87 Aligned_cols=184 Identities=15% Similarity=0.103 Sum_probs=92.8
Q ss_pred HHHHHhHHCCCceEE--E-eCCCCCccchHHHHHHHHhCCCcEE-EEEEcCCCC--cchHHHHHHHHHhcCCceEEEe-c
Q 019335 96 FLLQCMEEASVDGAL--I-VQPINHKFDHSLVTSVLKKYPSKFV-GCCLANPAE--DVIGIKQLEQLILKDGFRAVRF-N 168 (342)
Q Consensus 96 ~ll~~md~~GI~~~v--~-~~~~~~~~~N~~~~~~~~~~p~r~~-g~~~i~p~~--~~~~~~eler~~~~~g~~Gvk~-~ 168 (342)
..++.+...|++..- + +.+.......+-+.+..++...++. +++.+...- .....+.+++.+ +.|...++- .
T Consensus 118 ~~l~~~~~~Gtt~~r~~v~~~~~~~~~~~~a~~e~l~e~~~~v~~~~~a~~~~g~~~~~~~~lL~~al-~~Ga~~i~gl~ 196 (410)
T PRK06846 118 KLIELLQSKGATHIRSHCNIDPVIGLKNLENLQAALERYKDGFTYEIVAFPQHGLLRSNSEPLMREAM-KMGAHLVGGVD 196 (410)
T ss_pred HHHHHHHhCCccEEEEEEeeCcccccchHHHHHHHHHHhhCcceEEEEeccCcccCCccHHHHHHHHH-HcCCCEEeCCC
Confidence 456667778888732 2 1221111112223344444444433 444443321 122345677775 556554442 2
Q ss_pred CCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEEeccCCCCC---HHHHHHHHHhCCCC--cEEecccCCCCCCCCchhhHh
Q 019335 169 PYLWPSGQQMTNEVGKAMFSKAGELGVPVGFMCMKGLNLH---ISEIEELCTEFPST--TVLLDHLAFCKPPSNDEESLA 243 (342)
Q Consensus 169 ~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH~~~~~~~~---~~~l~~l~~~~P~l--k~vl~H~G~~~p~~~~~~~~~ 243 (342)
+.. ......+.++.+++.|+++|+||.+|+.+..... +.++.+.+.+. ++ ++.+.|+.... ... ...
T Consensus 197 p~~---~~~~~~~~l~~~~~lA~~~g~~v~~Hv~e~~~~~~~~~~~~~~~~~~~-gl~~~v~~~H~~~l~-~~~---~~e 268 (410)
T PRK06846 197 PAS---VDGAIEKSLDTMFQIAVDFNKGVDIHLHDTGPLGVATIKYLVETTEEA-QWKGKVTISHAFALG-DLN---EEE 268 (410)
T ss_pred Ccc---CCcCHHHHHHHHHHHHHHhCCCcEEEECCCCChhHHHHHHHHHHHHHh-CCCCCEEEEecchhh-cCC---HHH
Confidence 211 1233456799999999999999999998543222 23344555554 23 78999998621 111 122
Q ss_pred HHHHhc-ccCCCcEEEecCcccccccCCCCCCCchhHHHHHHHhcCCCcEEEccCCCC
Q 019335 244 FSNLLK-LSRFPQVYVKFSALFRVSRMPFPYQDLSSPLSQVVSSFGANRVMWGSDFPY 300 (342)
Q Consensus 244 ~~~~~~-l~~~~Nvy~~~S~~~~~~~~~~~~~~~~~~l~~~i~~~G~dRilfGSD~P~ 300 (342)
+.++.+ +++.+ +.+-.+.. . ..+. .-++.+.+. |. ++-+|||.|.
T Consensus 269 ~~~li~~la~~g-~~v~~~~~-~--~~g~------~p~~~l~~~-Gv-~v~lGtD~~~ 314 (410)
T PRK06846 269 VEELAERLAAQG-ISITSTVP-I--GRLH------MPIPLLHDK-GV-KVSLGTDSVI 314 (410)
T ss_pred HHHHHHHHHHcC-CeEEEeCC-C--CCCC------CCHHHHHhC-CC-eEEEecCCCC
Confidence 333333 44433 44322111 0 1111 125566555 44 8899999874
No 89
>PRK06038 N-ethylammeline chlorohydrolase; Provisional
Probab=96.94 E-value=0.38 Score=47.10 Aligned_cols=146 Identities=12% Similarity=0.125 Sum_probs=73.7
Q ss_pred CcCCcHHHHHHHHHHhhhCCeEEEEeccCCCCCHHHH--------HHHHHhC--CCCcEEecccCCCCCCCCchhhHhHH
Q 019335 176 QQMTNEVGKAMFSKAGELGVPVGFMCMKGLNLHISEI--------EELCTEF--PSTTVLLDHLAFCKPPSNDEESLAFS 245 (342)
Q Consensus 176 ~~l~~~~~~~~~~~a~e~~lpv~iH~~~~~~~~~~~l--------~~l~~~~--P~lk~vl~H~G~~~p~~~~~~~~~~~ 245 (342)
....++.+..+++.|.++|++|.+|+.+... ....+ .+.++++ -+-++++.|+.... . .
T Consensus 185 ~~~s~e~l~~~~~~A~~~g~~v~~H~~e~~~-~~~~~~~~~G~~~i~~l~~~g~l~~r~~~~H~~~l~----~------~ 253 (430)
T PRK06038 185 YTCSEEFLSKVKKLANKDGVGIHIHVLETEA-ELNQMKEQYGMCSVNYLDDIGFLGPDVLAAHCVWLS----D------G 253 (430)
T ss_pred ccCCHHHHHHHHHHHHHcCCcEEEEcCCCHH-HHHHHHHHhCCCHHHHHHHcCCCCCCeEEEEEecCC----H------H
Confidence 3566788999999999999999999975411 01111 1223333 25678899988642 1 1
Q ss_pred HHhcccCCCcEEEecCcccccc-cCCCCCCCchhHHHHHHHhcCCCcEEEccCCCCCCCCCChHhHHHHH---HHHH--h
Q 019335 246 NLLKLSRFPQVYVKFSALFRVS-RMPFPYQDLSSPLSQVVSSFGANRVMWGSDFPYVVPECGYKGGREAA---SLIA--N 319 (342)
Q Consensus 246 ~~~~l~~~~Nvy~~~S~~~~~~-~~~~~~~~~~~~l~~~i~~~G~dRilfGSD~P~~~~~~~~~~~~~~~---~~~~--~ 319 (342)
++..+++. ++.+-.+...... ..+ . .-++.+++. |. ++-+|||++......+.-..+... .... .
T Consensus 254 ~~~~la~~-g~~v~~~P~~n~~~~~~-----~-~p~~~~~~~-Gv-~v~lGtD~~~~~~~~d~~~~~~~a~~~~~~~~~~ 324 (430)
T PRK06038 254 DIEILRER-GVNVSHNPVSNMKLASG-----I-APVPKLLER-GV-NVSLGTDGCASNNNLDMFEEMKTAALLHKVNTMD 324 (430)
T ss_pred HHHHHHhc-CCEEEEChHHhhhhccC-----C-CCHHHHHHC-CC-eEEEeCCCCccCCCcCHHHHHHHHHHHhhhccCC
Confidence 12233332 2333322111000 001 1 125666665 54 799999986542211211111111 0100 1
Q ss_pred cCCCCHHHHHHHHhHHHHHhcC
Q 019335 320 EVPLSPSELEWIMGGTIMQLFQ 341 (342)
Q Consensus 320 ~~~l~~~~~~~I~~~NA~rl~~ 341 (342)
...++.++.=+....|..+.++
T Consensus 325 ~~~~~~~~al~~aT~~gA~~lg 346 (430)
T PRK06038 325 PTALPARQVLEMATVNGAKALG 346 (430)
T ss_pred CCcCCHHHHHHHHhHHHHHHhC
Confidence 1245666555566666666554
No 90
>TIGR01792 urease_alph urease, alpha subunit. This model describes the urease alpha subunit UreC (designated beta or B chain, UreB in Helicobacter species). Accessory proteins for incorporation of the nickel cofactor are usually found in addition to the urease alpha, beta, and gamma subunits. The trusted cutoff is set above the scores of many reported fragments and of a putative second urease alpha chain in Streptomyces coelicolor.
Probab=96.94 E-value=0.012 Score=59.05 Aligned_cols=155 Identities=14% Similarity=0.078 Sum_probs=86.8
Q ss_pred CeeeeeeeccCCCCccCCCCCCCCCCCCCCCCChHHHHHHhHHCCCceEEEeCCCC----C------c-cchHHHHHHHH
Q 019335 61 KIIDSHLHVWASPEEAADKFPYFPGQEPTLPGHVDFLLQCMEEASVDGALIVQPIN----H------K-FDHSLVTSVLK 129 (342)
Q Consensus 61 ~iID~H~Hl~~~~~~~~~~~p~~~~~~~~~~~~~~~ll~~md~~GI~~~v~~~~~~----~------~-~~N~~~~~~~~ 129 (342)
-.||+|+|+..+. ..+..-..||...+-..... . . ..-..+++..+
T Consensus 129 GlIDtHvH~~~P~-----------------------~~~aAl~gGVTTmI~~Gtgp~~~t~pTt~t~~~~~~~~~l~aa~ 185 (567)
T TIGR01792 129 GGIDTHVHYISPQ-----------------------QVQAALDNGITTLIGGGTGPADGTNATTCTPGPWYLHRMLQAAD 185 (567)
T ss_pred CeEEeecCCCCcc-----------------------HHHHHHhCceEEEecCCCccccCCCCcccccchhhHHHHHHHhc
Confidence 5899999986421 12344466888777642210 0 0 01122445555
Q ss_pred hCCCcEEEEEEcCCCCcchHHHHHHHHHhcCCceEEEecCCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEEeccCCCCCH
Q 019335 130 KYPSKFVGCCLANPAEDVIGIKQLEQLILKDGFRAVRFNPYLWPSGQQMTNEVGKAMFSKAGELGVPVGFMCMKGLNLHI 209 (342)
Q Consensus 130 ~~p~r~~g~~~i~p~~~~~~~~eler~~~~~g~~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH~~~~~~~~~ 209 (342)
+.+=+ +++..... ....++|++.+ +.|+.|++.+..+ ..+.+.++..++.|+++|++|.+|+......
T Consensus 186 ~~~in-~g~~g~g~---~~~~~~L~e~i-~aGa~gfK~h~~y-----~~s~e~L~~al~~A~e~gv~V~iH~ET~~E~-- 253 (567)
T TIGR01792 186 GLPIN-FGFTGKGS---GSGPAALIEQI-EAGACGLKVHEDW-----GATPAAIDNALSVADEYDVQVAVHTDTLNES-- 253 (567)
T ss_pred cCCcc-EEEEeCCc---cchHHHHHHHH-HcCCcEEEeCCCC-----CCCHHHHHHHHHHHHHcCCEEEEeCCCcccc--
Confidence 55533 23322111 12346677765 4789999987532 3567789999999999999999999322111
Q ss_pred HHHHHHHHhCCCCcEEecccCCCCCCCCchhhHhHHHHhcccCCCcEE
Q 019335 210 SEIEELCTEFPSTTVLLDHLAFCKPPSNDEESLAFSNLLKLSRFPQVY 257 (342)
Q Consensus 210 ~~l~~l~~~~P~lk~vl~H~G~~~p~~~~~~~~~~~~~~~l~~~~Nvy 257 (342)
-.++...+++-+..+-+.|.-+.- + ..-..+++++..|||-
T Consensus 254 g~ve~t~~a~g~rpIh~~H~~G~g----~---ghapdi~~~~~~~~~~ 294 (567)
T TIGR01792 254 GFVEDTIAAFKGRTIHTYHTEGAG----G---GHAPDIIVVVGYNNIL 294 (567)
T ss_pred hHHHHHHHHHCCCcchhHhhcCCC----C---CcHHHHHHHcCCCCcc
Confidence 125556677766656555543310 0 0012355566666665
No 91
>PRK07228 N-ethylammeline chlorohydrolase; Provisional
Probab=96.91 E-value=0.49 Score=46.46 Aligned_cols=143 Identities=15% Similarity=0.142 Sum_probs=73.2
Q ss_pred cCCcHHHHHHHHHHhhhCCeEEEEeccCCCCCHHHHHHHHH-----------hC--CCCcEEecccCCCCCCCCchhhHh
Q 019335 177 QMTNEVGKAMFSKAGELGVPVGFMCMKGLNLHISEIEELCT-----------EF--PSTTVLLDHLAFCKPPSNDEESLA 243 (342)
Q Consensus 177 ~l~~~~~~~~~~~a~e~~lpv~iH~~~~~~~~~~~l~~l~~-----------~~--P~lk~vl~H~G~~~p~~~~~~~~~ 243 (342)
..+++.+..+++.+.++|+++.+|+.+. ...+..+.+ ++ .+-++++.|+.... . ..
T Consensus 195 ~~~~~~l~~~~~~a~~~g~~v~~H~~e~----~~~~~~~~~~~g~~~~~~l~~~g~~~~~~~l~H~~~~~----~---~~ 263 (445)
T PRK07228 195 SCTEELLRGVRDLADEYGVRIHTHASEN----RGEIETVEEETGMRNIHYLDEVGLTGEDLILAHCVWLD----E---EE 263 (445)
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEEeCCC----HHHHHHHHHHhCCCHHHHHHHCCCCCCCcEEEEEecCC----H---HH
Confidence 4567789999999999999999999643 222322222 22 24578899998632 1 12
Q ss_pred HHHHhcccCCCcEEEecCcccccccCCCCCCCchhHHHHHHHhcCCCcEEEccCCCCCCCCCC-hHhHHHHH--HHHHh-
Q 019335 244 FSNLLKLSRFPQVYVKFSALFRVSRMPFPYQDLSSPLSQVVSSFGANRVMWGSDFPYVVPECG-YKGGREAA--SLIAN- 319 (342)
Q Consensus 244 ~~~~~~l~~~~Nvy~~~S~~~~~~~~~~~~~~~~~~l~~~i~~~G~dRilfGSD~P~~~~~~~-~~~~~~~~--~~~~~- 319 (342)
++. +++. ++.+-......... . ... .-++++++. | -++.+|||.+......+ +......+ .....
T Consensus 264 ~~~---~~~~-g~~v~~~P~~~~~~-~---~~~-~p~~~~~~~-G-v~v~lGtD~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (445)
T PRK07228 264 REI---LAET-GTHVTHCPSSNLKL-A---SGI-APVPDLLER-G-INVALGADGAPCNNTLDPFTEMRQAALIQKVDRL 332 (445)
T ss_pred HHH---HHHc-CCeEEEChHHhhhc-c---ccc-CcHHHHHHC-C-CeEEEcCCCCccCCCccHHHHHHHHHHHhhhccC
Confidence 222 2222 23332221100000 0 011 235666655 3 46899999865432111 21111111 00000
Q ss_pred -cCCCCHHHHHHHHhHHHHHhcC
Q 019335 320 -EVPLSPSELEWIMGGTIMQLFQ 341 (342)
Q Consensus 320 -~~~l~~~~~~~I~~~NA~rl~~ 341 (342)
...++.++.=+....|+.+.++
T Consensus 333 ~~~~~s~~~al~~~T~~~A~~lg 355 (445)
T PRK07228 333 GPTAMPARTVFEMATLGGAKAAG 355 (445)
T ss_pred CCcccCHHHHHHHHHHHHHHHhC
Confidence 0246777766667777777664
No 92
>PRK07203 putative chlorohydrolase/aminohydrolase; Validated
Probab=96.73 E-value=0.49 Score=46.46 Aligned_cols=127 Identities=10% Similarity=0.071 Sum_probs=66.1
Q ss_pred HHhHHCCCceEEEeCCCCC--ccchHHHHHHHHhCCCcEE-EEEEcCCCCc---chHHHHHHHHHhc-----CCceEEEe
Q 019335 99 QCMEEASVDGALIVQPINH--KFDHSLVTSVLKKYPSKFV-GCCLANPAED---VIGIKQLEQLILK-----DGFRAVRF 167 (342)
Q Consensus 99 ~~md~~GI~~~v~~~~~~~--~~~N~~~~~~~~~~p~r~~-g~~~i~p~~~---~~~~~eler~~~~-----~g~~Gvk~ 167 (342)
.+|-+.|++..+-+..... ...-+.+.+.+++.+=|.+ +....++... .+++++.++.++. .+...+.+
T Consensus 115 ~e~l~~GtTt~~d~~~~~~~~~~~~~~~~~a~~~~GiR~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~ 194 (442)
T PRK07203 115 LEAIKNGVTTVFDHHASPNYIGGSLFTIADAAKKVGLRAMLCYETSDRDGEKELQEGVEENIRFIKHIDEAKDDMVEAMF 194 (442)
T ss_pred HHHHHcCceEEEccccccccccchHHHHHHHHHHhCCeEEEecccccCCcchhHHHHHHHHHHHHHHhcCCCCCceEEEE
Confidence 4677889988775421111 1112345555655543332 2233444321 1223333332221 12333333
Q ss_pred cCCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEEeccCCCCCHHHHHH-----------HHHhC--CCCcEEecccCCC
Q 019335 168 NPYLWPSGQQMTNEVGKAMFSKAGELGVPVGFMCMKGLNLHISEIEE-----------LCTEF--PSTTVLLDHLAFC 232 (342)
Q Consensus 168 ~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH~~~~~~~~~~~l~~-----------l~~~~--P~lk~vl~H~G~~ 232 (342)
.|.. .....++.++.+.+.|+++|+||.+|+.++. .+... .+.++ =+-++++.|+.+.
T Consensus 195 ~p~~---~~~~s~~~l~~~~~lA~~~g~~i~~H~~E~~----~e~~~~~~~~g~~~v~~l~~~Gll~~~~~~~H~~~~ 265 (442)
T PRK07203 195 GLHA---SFTLSDATLEKCREAVKETGRGYHIHVAEGI----YDVSDSHKKYGKDIVERLADFGLLGEKTLAAHCIYL 265 (442)
T ss_pred ccCC---CcCcCHHHHHHHHHHHHHcCCcEEEEecCCh----HHHHHHHHHcCCCHHHHHHhCCCCCCCcEEEEeecC
Confidence 3331 2345567899999999999999999998542 22222 22332 1456789999874
No 93
>PRK00369 pyrC dihydroorotase; Provisional
Probab=96.72 E-value=0.25 Score=47.82 Aligned_cols=230 Identities=13% Similarity=-0.002 Sum_probs=112.5
Q ss_pred CeeeeeeeccCCCCccCCCCCCCCCCCCCCCCChHHHHHHhHHCCCceEEEeCCCCCccchHHHHHHHH-hCC-CcEE--
Q 019335 61 KIIDSHLHVWASPEEAADKFPYFPGQEPTLPGHVDFLLQCMEEASVDGALIVQPINHKFDHSLVTSVLK-KYP-SKFV-- 136 (342)
Q Consensus 61 ~iID~H~Hl~~~~~~~~~~~p~~~~~~~~~~~~~~~ll~~md~~GI~~~v~~~~~~~~~~N~~~~~~~~-~~p-~r~~-- 136 (342)
-.||.|+|+-.+. +. ...+.+.--...-.-||+..+.++...-..++...++... .-. .-.+
T Consensus 48 G~ID~HvH~r~pg------~~--------~~ed~~sgs~AAa~GGvTtv~~mPnt~P~~~~~~~l~~~~~~a~~~~~vd~ 113 (392)
T PRK00369 48 GAIDLHVHLRGLK------LS--------YKEDVASGTSEAAYGGVTLVADMPNTIPPLNTPEAITEKLAELEYYSRVDY 113 (392)
T ss_pred CEEEcccccCCCC------Cc--------ccccHHHHHHHHHhCCcEEEEECCCCCCCCChHHHHHHHHHHhCcCCeEEE
Confidence 5799999996431 11 1234444444455679999988863222233433332222 211 1122
Q ss_pred EEE-EcCCCCcchHHHHHHHHHhcCCceEEEecCCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEEeccCC------C-CC
Q 019335 137 GCC-LANPAEDVIGIKQLEQLILKDGFRAVRFNPYLWPSGQQMTNEVGKAMFSKAGELGVPVGFMCMKGL------N-LH 208 (342)
Q Consensus 137 g~~-~i~p~~~~~~~~eler~~~~~g~~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH~~~~~------~-~~ 208 (342)
++. .+ .. ..+++. +.|..|++.... +. . ...+++.+.+++.+|.+|+-+.. . ..
T Consensus 114 ~~~~~~--~~---~~~el~----~~~~~g~k~f~~----~~--~---~~~~~~~~~~~~~~v~~HaE~~~l~~~~~~~~r 175 (392)
T PRK00369 114 FVYSGV--TK---DPEKVD----KLPIAGYKIFPE----DL--E---REETFRVLLKSRKLKILHPEVPLALKSNRKLRR 175 (392)
T ss_pred EEEeec--cC---CHHHHH----HhhCceEEEECC----CC--c---hHHHHHHHHHhCCEEEEeCCCHHHhhcchhccc
Confidence 222 22 11 123453 346777775532 11 2 23466667777799999985420 0 00
Q ss_pred --HHHHH--HHHHhCCCCcEEecccCCCCCCCCchhhHhHHHHhcccCCCcEEEecCcccccccC--------CCCCCC-
Q 019335 209 --ISEIE--ELCTEFPSTTVLLDHLAFCKPPSNDEESLAFSNLLKLSRFPQVYVKFSALFRVSRM--------PFPYQD- 275 (342)
Q Consensus 209 --~~~l~--~l~~~~P~lk~vl~H~G~~~p~~~~~~~~~~~~~~~l~~~~Nvy~~~S~~~~~~~~--------~~~~~~- 275 (342)
..++. ..+..+ .++.+.|.... + .. +.++..++.++++.-+..... ..|...
T Consensus 176 p~~aE~~ai~~~~~~--~~lhi~HvSt~------~---~v----~~ak~~gvt~Ev~pHhL~l~~~~~~~~k~~PPLR~~ 240 (392)
T PRK00369 176 NCWYEIAALYYVKDY--QNVHITHASNP------R---TV----RLAKELGFTVDITPHHLLVNGEKDCLTKVNPPIRDI 240 (392)
T ss_pred CHHHHHHHHHHHHHh--CCEEEEECCCH------H---HH----HHHHHCCCeEEechhHheeccCCCCceEEeCCCCCH
Confidence 01111 122233 67889999862 1 11 122222366666643322110 112221
Q ss_pred -chhHHHHHHHhcCCCcEEEccC-CCCCCCCC--Ch----------HhHHHHHHHHHhcCCCCHHHHHHHHhHHHHHhcC
Q 019335 276 -LSSPLSQVVSSFGANRVMWGSD-FPYVVPEC--GY----------KGGREAASLIANEVPLSPSELEWIMGGTIMQLFQ 341 (342)
Q Consensus 276 -~~~~l~~~i~~~G~dRilfGSD-~P~~~~~~--~~----------~~~~~~~~~~~~~~~l~~~~~~~I~~~NA~rl~~ 341 (342)
.+..|-+.+.. .| +.+|| .|+...+. ++ +..+..+........++.++.-+++..|.+++|+
T Consensus 241 ~dr~aL~~~l~~--id--~i~SDHaP~~~~~K~~~f~~~~~Gi~GlE~~lpll~~~v~~~~lsl~~~v~~~s~nPA~ilg 316 (392)
T PRK00369 241 NERLWLLQALSE--VD--AIASDHAPHSSFEKLQPYEVCPPGIAALSFTPPFIYTLVSKGILSIDRAVELISTNPARILG 316 (392)
T ss_pred HHHHHHHHHHHh--CC--EEEeCCCCCCHHHccCCHhhCCCCCeeHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhC
Confidence 12233333333 33 88999 47754321 11 1111122222223568999999999999999986
No 94
>TIGR02033 D-hydantoinase D-hydantoinase. This model represents the D-hydantoinase (dihydropyrimidinase) which primarily converts 5,6-dihydrouracil to 3-ureidopropanoate but also acts on dihydrothymine and hydantoin. The enzyme is a metalloenzyme.
Probab=96.63 E-value=0.79 Score=45.00 Aligned_cols=129 Identities=9% Similarity=-0.028 Sum_probs=66.8
Q ss_pred CeeeeeeeccCCCCccCCCCCCCCCCCCCCCCChHHHHHHhHHCCCceEEEeCCCCCccchHHHHHHHHhC-CC-cEE--
Q 019335 61 KIIDSHLHVWASPEEAADKFPYFPGQEPTLPGHVDFLLQCMEEASVDGALIVQPINHKFDHSLVTSVLKKY-PS-KFV-- 136 (342)
Q Consensus 61 ~iID~H~Hl~~~~~~~~~~~p~~~~~~~~~~~~~~~ll~~md~~GI~~~v~~~~~~~~~~N~~~~~~~~~~-p~-r~~-- 136 (342)
-.||+|+|+..+. ... . ...+....-+..-..||+..+-+.......++...++...+. .+ .++
T Consensus 52 GlID~H~H~~~~~----~~~-~-------~~e~~~~~s~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (454)
T TIGR02033 52 GGIDVHTHLEMPF----GGT-V-------TADDFFTGTKAAAAGGTTTIIDFALPHKGESLTEALETWHEKAEGKSVIDY 119 (454)
T ss_pred CEecceeccCccc----CCC-C-------CcchHHHHHHHHHhCCCCEEEeCcCCCCCCCHHHHHHHHHHHhccCceEEE
Confidence 5899999997421 000 0 011121112233468999888764221112233333322221 11 122
Q ss_pred EEEEcCCCCcchHHHHHHHHHhcCCceEEEecCCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEEec
Q 019335 137 GCCLANPAEDVIGIKQLEQLILKDGFRAVRFNPYLWPSGQQMTNEVGKAMFSKAGELGVPVGFMCM 202 (342)
Q Consensus 137 g~~~i~p~~~~~~~~eler~~~~~g~~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH~~ 202 (342)
++..-.+....+.+++..+...+.|..++++..... .....+++.+...++.+.++|++|.+|+.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~-~~~~~~~~~l~~~~~~a~~~~~~v~~H~E 184 (454)
T TIGR02033 120 GFHMMITHWNDEVLEEHIPELVEEGITSFKVFMAYK-NLLMVDDEELFEILKRAKELGALLQVHAE 184 (454)
T ss_pred EEEecccCCcHHHHHHHHHHHHhcCCcEEEEEeecC-CCCCCCHHHHHHHHHHHHhCCCeEEEEcC
Confidence 221111222222344533333567888888764321 12346788999999999999999999973
No 95
>PRK14085 imidazolonepropionase; Provisional
Probab=96.62 E-value=0.55 Score=45.16 Aligned_cols=149 Identities=12% Similarity=0.133 Sum_probs=78.1
Q ss_pred ceEEEecCCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEEeccCCCCCHHHHHHHHHhCCCCcEEecccCCCCCCCCchhh
Q 019335 162 FRAVRFNPYLWPSGQQMTNEVGKAMFSKAGELGVPVGFMCMKGLNLHISEIEELCTEFPSTTVLLDHLAFCKPPSNDEES 241 (342)
Q Consensus 162 ~~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH~~~~~~~~~~~l~~l~~~~P~lk~vl~H~G~~~p~~~~~~~ 241 (342)
..-++++.. +..++.+.+..+++.+.++|+++.+|+..... ...+..+ .++.- ..+.|+.... .
T Consensus 192 ~~~idi~~~----~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~--~~~v~~~-~~~g~--~~i~H~~~l~----~--- 255 (382)
T PRK14085 192 ARWIDVFCE----RGAFDEDQSRRVLTAGRAAGLGLRVHGNQLGP--GPGVRLA-VELGA--ASVDHCTYLT----D--- 255 (382)
T ss_pred CCeEEEEec----CCCCCHHHHHHHHHHHHHcCCCeEEEeCcccC--ChHHHHH-HHcCC--CcHHHhCCCC----H---
Confidence 334555542 23566789999999999999999999863211 1123222 23432 2477887531 1
Q ss_pred HhHHHHhcccCCCcEEEecCccccc-ccCCCCCCCchhHHHHHHHhcCCCcEEEccCCCCCCCCCChHh-HHHHHHHHHh
Q 019335 242 LAFSNLLKLSRFPQVYVKFSALFRV-SRMPFPYQDLSSPLSQVVSSFGANRVMWGSDFPYVVPECGYKG-GREAASLIAN 319 (342)
Q Consensus 242 ~~~~~~~~l~~~~Nvy~~~S~~~~~-~~~~~~~~~~~~~l~~~i~~~G~dRilfGSD~P~~~~~~~~~~-~~~~~~~~~~ 319 (342)
..+ ..+++.. +.+-+...... ...++ .-++.+++. |. ++.+|||++...+ +.. ....+.....
T Consensus 256 ~~~---~~la~~g-v~~~~~P~~~~~~~~~~------~~~~~l~~a-Gv-~v~lgsD~~~~~~---~~~~~~~~~~~~~~ 320 (382)
T PRK14085 256 ADV---DALAGSG-TVATLLPGAEFSTRQPY------PDARRLLDA-GV-TVALASDCNPGSS---YTSSMPFCVALAVR 320 (382)
T ss_pred HHH---HHHHHcC-CEEEECcHHHHhcCCCC------chHHHHHHC-CC-cEEEEeCCCCCCC---hHHHHHHHHHHHHH
Confidence 122 2233322 33222211110 01111 346676666 54 7999999853221 211 1111211122
Q ss_pred cCCCCHHHHHHHHhHHHHHhcC
Q 019335 320 EVPLSPSELEWIMGGTIMQLFQ 341 (342)
Q Consensus 320 ~~~l~~~~~~~I~~~NA~rl~~ 341 (342)
..+++.++.-+....|+.++++
T Consensus 321 ~~~l~~~~al~~aT~~~A~~lg 342 (382)
T PRK14085 321 QMGMTPAEAVWAATAGGARALR 342 (382)
T ss_pred hcCCCHHHHHHHHHHHHHHHcC
Confidence 3578888777777788877764
No 96
>PRK10027 cryptic adenine deaminase; Provisional
Probab=96.56 E-value=0.4 Score=48.82 Aligned_cols=228 Identities=10% Similarity=-0.032 Sum_probs=124.2
Q ss_pred CeeeeeeeccCCCCccCCCCCCCCCCCCCCCCChHHHHHHhHHCCCceEEEeCCCC---Cc-cchHHHHHHHHhCCCcEE
Q 019335 61 KIIDSHLHVWASPEEAADKFPYFPGQEPTLPGHVDFLLQCMEEASVDGALIVQPIN---HK-FDHSLVTSVLKKYPSKFV 136 (342)
Q Consensus 61 ~iID~H~Hl~~~~~~~~~~~p~~~~~~~~~~~~~~~ll~~md~~GI~~~v~~~~~~---~~-~~N~~~~~~~~~~p~r~~ 136 (342)
-.||+|+|+..+ ..+++++.+..-..|++..+..+-.. .+ ..-+++++..+.-|-++.
T Consensus 85 GlIDaHvHiess------------------~~~p~~~a~aal~~G~TtVv~dPhei~nv~g~~gi~~~l~~a~~~p~~~~ 146 (588)
T PRK10027 85 GFIDAHLHIESS------------------MMTPVTFETATLPRGLTTVICDPHEIVNVMGEAGFAWFARCAEQARQNQY 146 (588)
T ss_pred CeEeccccCCcc------------------cCCHhHHHHHHHhCceEEEEcCCCCcccCCCHHHHHHHHHHhhhCCCeeE
Confidence 589999998642 12345555556678998887643211 11 123677777777774433
Q ss_pred EEE--EcCC---CCc---chHHHHHHHHHhcCCceEEEecCCCCCCCCc-CCcHHHHHHHHHHhhhCCeEEEEeccCCCC
Q 019335 137 GCC--LANP---AED---VIGIKQLEQLILKDGFRAVRFNPYLWPSGQQ-MTNEVGKAMFSKAGELGVPVGFMCMKGLNL 207 (342)
Q Consensus 137 g~~--~i~p---~~~---~~~~~eler~~~~~g~~Gvk~~~~~~~~g~~-l~~~~~~~~~~~a~e~~lpv~iH~~~~~~~ 207 (342)
... .++. .+. .-..++++++++.+++.|+....++ + |-- -++..+..+. .+ +|.+|.=|+.. .
T Consensus 147 ~~~ps~vpa~~~~Et~Ga~~~~~~~~~~l~~~~v~glgEvMn~-~-~V~~~d~~~~~ki~-~~--~~~~idGH~p~---l 218 (588)
T PRK10027 147 LQVSSCVPALEGCDVNGASFTLEQMLAWRDHPQVTGLAEMMDY-P-GVISGQNALLDKLD-AF--RHLTLDGHCPG---L 218 (588)
T ss_pred EeecccCcCCcccccCCCcCCHHHHHHHhcCCCceeEEeccCc-c-ccccCCHHHHHHHH-Hh--CCCceECCCCC---C
Confidence 221 1222 121 1135789998889999999876543 2 332 2344555555 33 89999877541 1
Q ss_pred CHHHHHHHHHhCCCCcEEecccCCCCCCCCchhhHhHHHHh-cccCCCcEEEec--CcccccccCCCCCCCchhHHHHHH
Q 019335 208 HISEIEELCTEFPSTTVLLDHLAFCKPPSNDEESLAFSNLL-KLSRFPQVYVKF--SALFRVSRMPFPYQDLSSPLSQVV 284 (342)
Q Consensus 208 ~~~~l~~l~~~~P~lk~vl~H~G~~~p~~~~~~~~~~~~~~-~l~~~~Nvy~~~--S~~~~~~~~~~~~~~~~~~l~~~i 284 (342)
.=..+...+..-. -=+|-+.. .++.. ++..- +|+-+ +.. ..++ +.+..++
T Consensus 219 ~g~~L~ay~aaGi----~sDHE~~t-----------~eea~eklr~G--m~v~iRegS~---------~~nl-~~l~~~~ 271 (588)
T PRK10027 219 GGKELNAYIAAGI----ENCHESYQ-----------LEEGRRKLQLG--MSLMIREGSA---------ARNL-NALAPLI 271 (588)
T ss_pred ChHHHHHHHHcCC----CCCcccCC-----------HHHHHHHHHCC--CEEEEeCCcc---------ccCH-HHHHHHh
Confidence 1134444433222 23454431 12222 23221 34332 211 1122 3344444
Q ss_pred HhcCCCcEEEccCCCCCCCCCChHhHHHHHHHHHhcCCCCHHHHHHHHhHHHHHhcC
Q 019335 285 SSFGANRVMWGSDFPYVVPECGYKGGREAASLIANEVPLSPSELEWIMGGTIMQLFQ 341 (342)
Q Consensus 285 ~~~G~dRilfGSD~P~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~I~~~NA~rl~~ 341 (342)
.....+|++|-||.-+...-..-......++...+..+++.++.=+...-|+++.|+
T Consensus 272 ~~~~~~~~~l~TDd~~~~~l~~~Ghi~~~vr~av~~~Gi~~~~Ai~mAT~nPA~~lg 328 (588)
T PRK10027 272 NEFNSPQCMLCTDDRNPWEIAHEGHIDALIRRLIEQHNVPLHVAYRVASWSTARHFG 328 (588)
T ss_pred hccCCCeEEEEcCCCChHHHHhccCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 444678999999975542210011223445444444689999999999999999885
No 97
>cd00854 NagA N-acetylglucosamine-6-phosphate deacetylase, NagA, catalyzes the hydrolysis of the N-acetyl group of N-acetyl-glucosamine-6-phosphate (GlcNAc-6-P) to glucosamine 6-phosphate and acetate. This is the first committed step in the biosynthetic pathway to amino-sugar-nucleotides, which is needed for cell wall peptidoglycan and teichoic acid biosynthesis. Deacetylation of N-acetylglucosamine is also important in lipopolysaccharide synthesis and cell wall recycling.
Probab=96.52 E-value=0.83 Score=43.88 Aligned_cols=245 Identities=12% Similarity=0.097 Sum_probs=125.1
Q ss_pred CeeeeeeeccCCCCccCCCCCCCCCCCCCCCCChHHHHHHhHHCCCceEEEeCCCCCccch----HHHHHHHHhCC-CcE
Q 019335 61 KIIDSHLHVWASPEEAADKFPYFPGQEPTLPGHVDFLLQCMEEASVDGALIVQPINHKFDH----SLVTSVLKKYP-SKF 135 (342)
Q Consensus 61 ~iID~H~Hl~~~~~~~~~~~p~~~~~~~~~~~~~~~ll~~md~~GI~~~v~~~~~~~~~~N----~~~~~~~~~~p-~r~ 135 (342)
-.||+|+|.+.. ..++. . ...+.+...+.+-..||+..+.+......... ..+.+..++.. -++
T Consensus 52 G~iD~H~H~~~g-----~~~~~-----~-~~e~~~~~~~~~~~~GvTtv~~t~~t~~~~~~~~~l~~~~~~~~~~~g~~~ 120 (374)
T cd00854 52 GFIDIHIHGGGG-----ADFMD-----G-TAEALKTIAEALAKHGTTSFLPTTVTAPPEEIAKALAAIAEAIAEGQGAEI 120 (374)
T ss_pred cEEEeeecccCC-----CCCCC-----C-CHHHHHHHHHHHHccCcceeeccccCCCHHHHHHHHHHHHHHhhcCCCCee
Confidence 589999998632 11110 0 01233445556677899887654321111111 11222223331 256
Q ss_pred EEEE----EcCCCC----c-----chHHHHHHHHHhcCCceEEEecCCCCCCCCcCCcHHHHHHHHHHhhhCCeEE-EEe
Q 019335 136 VGCC----LANPAE----D-----VIGIKQLEQLILKDGFRAVRFNPYLWPSGQQMTNEVGKAMFSKAGELGVPVG-FMC 201 (342)
Q Consensus 136 ~g~~----~i~p~~----~-----~~~~~eler~~~~~g~~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~-iH~ 201 (342)
+|+- .+++.. + ....+++++++...+ -.||+.... | . + ....++.+.|.++|++|. =|+
T Consensus 121 ~g~hleGP~~~~~~~g~h~~~~~~~~~~~~~~~~~~~~~-~~ik~~tla-P--E-~--~~~~~~i~~~~~~gi~v~~GH~ 193 (374)
T cd00854 121 LGIHLEGPFISPEKKGAHPPEYLRAPDPEELKKWLEAAG-GLIKLVTLA-P--E-L--DGALELIRYLVERGIIVSIGHS 193 (374)
T ss_pred EEEeeecCccCcccCCCCCHHHcCCcCHHHHHHHHHhcC-CCEEEEEEC-C--C-C--CChHHHHHHHHHCCeEEEeeCC
Confidence 6542 233221 0 012367777764322 335544211 1 1 1 113689999999999994 665
Q ss_pred ccCCCCCHHHHHHHHHhCCCCcEEecccCCCCCCCCchhhHhHHHHhcccCCCcEEEecCcccccccCCCCCCCchhHHH
Q 019335 202 MKGLNLHISEIEELCTEFPSTTVLLDHLAFCKPPSNDEESLAFSNLLKLSRFPQVYVKFSALFRVSRMPFPYQDLSSPLS 281 (342)
Q Consensus 202 ~~~~~~~~~~l~~l~~~~P~lk~vl~H~G~~~p~~~~~~~~~~~~~~~l~~~~Nvy~~~S~~~~~~~~~~~~~~~~~~l~ 281 (342)
. .....+.+.++ .+++. +.|+....+....+.-.. +-.....+++|+++=.-.. .-..+.++
T Consensus 194 ~----a~~~~~~~a~~--~G~~~-~tH~~n~m~~~~~r~~~~---~~a~l~~~~~~~~li~dg~--------Hv~~~~~~ 255 (374)
T cd00854 194 D----ATYEQAVAAFE--AGATH-VTHLFNAMSPLHHREPGV---VGAALSDDDVYAELIADGI--------HVHPAAVR 255 (374)
T ss_pred c----CCHHHHHHHHH--cCCCe-eeECCCCCCCcCCCCCcH---HHHhhcCCCCeEEEEcCCC--------cCCHHHHH
Confidence 4 12344555554 35653 889987654332211000 1112233467766432100 00125677
Q ss_pred HHHHhcCCCcEEEccCC--CCCCCCCCh-------------------------HhHHHHHHHHHhcCCCCHHHHHHHHhH
Q 019335 282 QVVSSFGANRVMWGSDF--PYVVPECGY-------------------------KGGREAASLIANEVPLSPSELEWIMGG 334 (342)
Q Consensus 282 ~~i~~~G~dRilfGSD~--P~~~~~~~~-------------------------~~~~~~~~~~~~~~~l~~~~~~~I~~~ 334 (342)
.+.+.-|++|++.-||. +...+...| -...+.++.+.+..+++.++.-+....
T Consensus 256 ~~~r~~g~~~~~lvtD~~~~~G~~~g~y~~~~~~~~~~~~~~~~~~g~laG~~~~l~~~~~~l~~~~~l~~~~al~~aT~ 335 (374)
T cd00854 256 LAYRAKGADKIVLVTDAMAAAGLPDGEYELGGQTVTVKDGVARLADGTLAGSTLTMDQAVRNMVKWGGCPLEEAVRMASL 335 (374)
T ss_pred HHHHhcCCCcEEEEeccccccCCCCCeEEECCEEEEEECCEEEcCCCCeeehHhhHHHHHHHHHHhhCCCHHHHHHHHhH
Confidence 77777788999999995 111111111 113344444444456899999898999
Q ss_pred HHHHhcC
Q 019335 335 TIMQLFQ 341 (342)
Q Consensus 335 NA~rl~~ 341 (342)
|+.++++
T Consensus 336 npA~~lg 342 (374)
T cd00854 336 NPAKLLG 342 (374)
T ss_pred HHHHHcC
Confidence 9999875
No 98
>PRK09061 D-glutamate deacylase; Validated
Probab=96.43 E-value=0.028 Score=56.32 Aligned_cols=78 Identities=13% Similarity=0.060 Sum_probs=54.1
Q ss_pred HHHHHHHHh---cCCceEEEecCCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEEeccCCC----C---CHHHHHHHHHhC
Q 019335 150 IKQLEQLIL---KDGFRAVRFNPYLWPSGQQMTNEVGKAMFSKAGELGVPVGFMCMKGLN----L---HISEIEELCTEF 219 (342)
Q Consensus 150 ~~eler~~~---~~g~~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH~~~~~~----~---~~~~l~~l~~~~ 219 (342)
+++++++++ +.|+.|++....+. ...++..+..+++.|+++|.+|.+|+.+..- . .+.++..++++.
T Consensus 168 l~~m~~ll~~al~~Ga~gis~~~~y~---p~~~~~eL~~l~~~A~~~g~~v~~H~e~~~~~~~~~e~~av~~~i~lA~~~ 244 (509)
T PRK09061 168 LAEILELLEQGLDEGALGIGIGAGYA---PGTGHKEYLELARLAARAGVPTYTHVRYLSNVDPRSSVDAYQELIAAAAET 244 (509)
T ss_pred HHHHHHHHHHHHHCCCCEEecCCccC---CCCCHHHHHHHHHHHHHcCCEEEEEecCcccCCchhHHHHHHHHHHHHHHh
Confidence 445555543 57999998753321 2347788999999999999999999975311 1 124455666655
Q ss_pred CCCcEEecccCC
Q 019335 220 PSTTVLLDHLAF 231 (342)
Q Consensus 220 P~lk~vl~H~G~ 231 (342)
+.++.+.|+..
T Consensus 245 -G~rv~IsHlss 255 (509)
T PRK09061 245 -GAHMHICHVNS 255 (509)
T ss_pred -CCCEEEEeecc
Confidence 68899999976
No 99
>PRK07575 dihydroorotase; Provisional
Probab=96.36 E-value=1.2 Score=43.86 Aligned_cols=246 Identities=10% Similarity=0.037 Sum_probs=119.0
Q ss_pred CeeeeeeeccCCCCccCCCCCCCCCCCCCCCCChHHHHHHhHHCCCceEEEeCCCCCccch-HHHHHHHHh-CCCcEEEE
Q 019335 61 KIIDSHLHVWASPEEAADKFPYFPGQEPTLPGHVDFLLQCMEEASVDGALIVQPINHKFDH-SLVTSVLKK-YPSKFVGC 138 (342)
Q Consensus 61 ~iID~H~Hl~~~~~~~~~~~p~~~~~~~~~~~~~~~ll~~md~~GI~~~v~~~~~~~~~~N-~~~~~~~~~-~p~r~~g~ 138 (342)
-.||+|+|+..+. .. ...+.....+..-..||+..+.++......++ +.+.+..++ ..+-.+.+
T Consensus 57 G~ID~H~H~~~~~------~~--------~~e~~~~~~~aa~~gGvTt~~dmp~~~p~~~~~~~~~~~~~~a~~~~~v~~ 122 (438)
T PRK07575 57 GVIDPQVHFREPG------LE--------HKEDLFTASRACAKGGVTSFLEMPNTKPLTTTQAALDDKLARAAEKCVVNY 122 (438)
T ss_pred cEEEeeeccCCCC------Cc--------CcchHHHHHHHHHhCCEEEEEECCCCCCCCCcHHHHHHHHHHhccCcEEEE
Confidence 6899999986421 00 12344444455567899998887532111222 222222222 22223333
Q ss_pred EEc-CCCCcchHHHHHHHHHhcCCceEEEecCCCCCCCCcCCcH-HHHHHHHHHhhhCCeEEEEeccCC-----------
Q 019335 139 CLA-NPAEDVIGIKQLEQLILKDGFRAVRFNPYLWPSGQQMTNE-VGKAMFSKAGELGVPVGFMCMKGL----------- 205 (342)
Q Consensus 139 ~~i-~p~~~~~~~~eler~~~~~g~~Gvk~~~~~~~~g~~l~~~-~~~~~~~~a~e~~lpv~iH~~~~~----------- 205 (342)
+.. ... ++ .++++... .|..|++........+..+++. .++. .+++.+.++.+|+.+..
T Consensus 123 ~~~~~~~-~~-~l~~l~~~---~~~~g~~~f~~~~~~~~~~~~~~~~~~---~~~~~~~~v~~h~e~~~l~~~~~~~~~g 194 (438)
T PRK07575 123 GFFIGAT-PD-NLPELLTA---NPTCGIKIFMGSSHGPLLVDEEAALER---IFAEGTRLIAVHAEDQARIRARRAEFAG 194 (438)
T ss_pred EEEcccc-cc-CHHHHHHh---hCCeEEEEEEeeCCCCcccCcHHHHHH---HHHhCCCEEEEeCcChHHHHhhhHhhcc
Confidence 221 111 12 23445433 2566776543110001222332 2233 34567999999985321
Q ss_pred ---C-----CC--------HHHHHHHHHhCCCCcEEecccCCCCCCCCchhhHhHHHHhcccCCCcEEEecCccccccc-
Q 019335 206 ---N-----LH--------ISEIEELCTEFPSTTVLLDHLAFCKPPSNDEESLAFSNLLKLSRFPQVYVKFSALFRVSR- 268 (342)
Q Consensus 206 ---~-----~~--------~~~l~~l~~~~P~lk~vl~H~G~~~p~~~~~~~~~~~~~~~l~~~~Nvy~~~S~~~~~~~- 268 (342)
+ .. +..+..+++.+ +.++.+.|.... +. .+.+ +-++..++.++++..+....
T Consensus 195 ~~~~~~~~~~~p~~aE~~av~~~~~la~~~-g~~lhi~HiSt~------~~---v~~i-~~~k~~~vt~ev~phhL~l~~ 263 (438)
T PRK07575 195 ISDPADHSQIQDEEAALLATRLALKLSKKY-QRRLHILHLSTA------IE---AELL-RQDKPSWVTAEVTPQHLLLNT 263 (438)
T ss_pred CcCcccccccCcHHHHHHHHHHHHHHHHHH-CCCEEEEECCCH------HH---HHHH-HHhcCCCEEEEEchhhheeCH
Confidence 0 01 12355677777 799999999852 11 1111 11122356777665432110
Q ss_pred -----------CCCCCCCchhHHHHHHHhc--CCCcEEEccCC-CCCCCC---------C---ChHhHHHHHHHHHhcCC
Q 019335 269 -----------MPFPYQDLSSPLSQVVSSF--GANRVMWGSDF-PYVVPE---------C---GYKGGREAASLIANEVP 322 (342)
Q Consensus 269 -----------~~~~~~~~~~~l~~~i~~~--G~dRilfGSD~-P~~~~~---------~---~~~~~~~~~~~~~~~~~ 322 (342)
...| .....-...+++.+ |. -...|||. |+...+ . ..+..+..+........
T Consensus 264 ~~~~~~~~~~k~~PP-LR~~~d~~~L~~~l~~G~-id~i~sDh~p~~~~~k~~~~~~~~~G~~g~e~~l~~l~~~~~~~~ 341 (438)
T PRK07575 264 DAYERIGTLAQMNPP-LRSPEDNEALWQALRDGV-IDFIATDHAPHTLEEKAQPYPNSPSGMPGVETSLPLMLTAAMRGK 341 (438)
T ss_pred HHHhCCCceEEEeCC-CCCHHHHHHHHHHHhCCC-CCEEecCCCCCCHHHccCCcccCCCCcccHHHHHHHHHHHHhcCC
Confidence 0112 22223344555555 32 33689994 665311 0 11111122212222346
Q ss_pred CCHHHHHHHHhHHHHHhcC
Q 019335 323 LSPSELEWIMGGTIMQLFQ 341 (342)
Q Consensus 323 l~~~~~~~I~~~NA~rl~~ 341 (342)
++.++.-+.+..|..++|+
T Consensus 342 lsl~~~~~~~s~npAk~lg 360 (438)
T PRK07575 342 CTVAQVVRWMSTAVARAYG 360 (438)
T ss_pred CCHHHHHHHHhhhHHHHcC
Confidence 8999999999999999986
No 100
>PRK01211 dihydroorotase; Provisional
Probab=96.23 E-value=1.3 Score=43.12 Aligned_cols=231 Identities=12% Similarity=0.050 Sum_probs=111.3
Q ss_pred CeeeeeeeccCCCCccCCCCCCCCCCCCCCCCChHHHHHHhHHCCCceEEEeCCCCCccchHHHHHHHH-hC-CCcEE--
Q 019335 61 KIIDSHLHVWASPEEAADKFPYFPGQEPTLPGHVDFLLQCMEEASVDGALIVQPINHKFDHSLVTSVLK-KY-PSKFV-- 136 (342)
Q Consensus 61 ~iID~H~Hl~~~~~~~~~~~p~~~~~~~~~~~~~~~ll~~md~~GI~~~v~~~~~~~~~~N~~~~~~~~-~~-p~r~~-- 136 (342)
-.||.|+|+-.+. +.+ ..+.+.--+..-.-||+..+.++...-..++...++... .. ..-.+
T Consensus 47 G~ID~HvH~r~pg------~~~--------ked~~s~s~AAaaGGvTtv~dmPnt~P~~~~~e~~~~~~~~a~~~s~vd~ 112 (409)
T PRK01211 47 AATDIHVHFRTPG------ETE--------KEDFSTGTLSAIFGGTTFIMDMPNNNIPIKDYNAFSDKLGRVAPKAYVDF 112 (409)
T ss_pred CeEEeeeccCCCC------Ccc--------cCcHHHHHHHHHcCCcEEEEECCCCCCCCChHHHHHHHHHHhccCceeeE
Confidence 5799999996541 111 233333334444669999988863211223433332222 21 11122
Q ss_pred EEE-EcCCCCcchHHHHHHHHHhcCCceEEEecCCCC-C-CCCcCCcHHHHHHHHHHhhhCCeEEEEeccCC--------
Q 019335 137 GCC-LANPAEDVIGIKQLEQLILKDGFRAVRFNPYLW-P-SGQQMTNEVGKAMFSKAGELGVPVGFMCMKGL-------- 205 (342)
Q Consensus 137 g~~-~i~p~~~~~~~~eler~~~~~g~~Gvk~~~~~~-~-~g~~l~~~~~~~~~~~a~e~~lpv~iH~~~~~-------- 205 (342)
++. .+.... .++ .+.|..|+|+..... . .+..+. +..++++.++|.+|.+|+-+..
T Consensus 113 ~~~~~~~~~~-----~~~----~~~g~~~~k~f~~~~~~~~~~~~~----~~~l~~~~~~g~~v~~H~E~~~l~~~~~~~ 179 (409)
T PRK01211 113 SLYSMETGNN-----ALI----LDERSIGLKVYMGGTTNTNGTDIE----GGEIKKINEANIPVFFHAELSECLRKHQFE 179 (409)
T ss_pred EEEeccCCch-----hhH----HhccCcEEEEEcCCCcCCCccccC----HHHHHHHHccCCEEEEeccChHHhhhhhhC
Confidence 222 222111 122 234888999754211 0 111122 2456778899999999986321
Q ss_pred --------CCCH--------HHHHHHHHhCCCCcEEecccCCCCCCCCchhhHhHHHHhcccCCCcEEEecCccccccc-
Q 019335 206 --------NLHI--------SEIEELCTEFPSTTVLLDHLAFCKPPSNDEESLAFSNLLKLSRFPQVYVKFSALFRVSR- 268 (342)
Q Consensus 206 --------~~~~--------~~l~~l~~~~P~lk~vl~H~G~~~p~~~~~~~~~~~~~~~l~~~~Nvy~~~S~~~~~~~- 268 (342)
...+ ..+..++++ ++.+.|...... + .+|+++++.-+....
T Consensus 180 ~~~~~~~~~~rP~~aE~~ai~~~~~la~~----~~hi~HvSt~~~------------~------~~vt~Ev~phhL~l~~ 237 (409)
T PRK01211 180 SKNLRDHDLARPIECEIKAVKYVKNLDLK----TKIIAHVSSIDV------------I------GRFLREVTPHHLLLND 237 (409)
T ss_pred cchHhhCCCCCCHHHHHHHHHHHHHHhCC----CcEEEEecChhh------------c------CceEEEecHHHHcccc
Confidence 0001 112222332 466777765210 0 145555543322100
Q ss_pred ---------CCCCCCCchhHHHHHHHhcCCCcE-EEccC-CCCCCCCC-----------ChHhHHHHHHHHHhcCCCCHH
Q 019335 269 ---------MPFPYQDLSSPLSQVVSSFGANRV-MWGSD-FPYVVPEC-----------GYKGGREAASLIANEVPLSPS 326 (342)
Q Consensus 269 ---------~~~~~~~~~~~l~~~i~~~G~dRi-lfGSD-~P~~~~~~-----------~~~~~~~~~~~~~~~~~l~~~ 326 (342)
...|..+ ..--..+++.+--..| +.+|| .|+...+. +.+..+..+....+...++-+
T Consensus 238 ~~~~~~~~kvnPPLRs-~~d~~aL~~~l~dG~ID~i~SDHaP~~~~eK~~~~~a~~G~~gle~~lpl~~~~v~~~~isl~ 316 (409)
T PRK01211 238 DMPLGSYGKVNPPLRD-RWTQERLLEEYISGRFDILSSDHAPHTEEDKQEFEYAKSGIIGVETRVPLFLALVKKKILPLD 316 (409)
T ss_pred ccccCCceeEcCCCCC-HHHHHHHHHHHhCCCCCEEeCCCCCCChhHhCCHhhCCCCCCcHHHHHHHHHHHHHcCCCCHH
Confidence 0112221 1233445555422233 68898 56643211 111122222223334569999
Q ss_pred HHHHHHhHHHHHhcC
Q 019335 327 ELEWIMGGTIMQLFQ 341 (342)
Q Consensus 327 ~~~~I~~~NA~rl~~ 341 (342)
+.-+++..|..++|+
T Consensus 317 ~~v~~~s~nPAki~g 331 (409)
T PRK01211 317 VLYKTAIERPASLFG 331 (409)
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999999999996
No 101
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=96.21 E-value=0.19 Score=46.81 Aligned_cols=129 Identities=11% Similarity=0.013 Sum_probs=82.5
Q ss_pred hHHHHHHhHHCCCceEEEeCCCC-----CccchHHHHHHH-HhCCCcEEEEEEcCCCCcchHHHHHHHHHhcCCceEEEe
Q 019335 94 VDFLLQCMEEASVDGALIVQPIN-----HKFDHSLVTSVL-KKYPSKFVGCCLANPAEDVIGIKQLEQLILKDGFRAVRF 167 (342)
Q Consensus 94 ~~~ll~~md~~GI~~~v~~~~~~-----~~~~N~~~~~~~-~~~p~r~~g~~~i~p~~~~~~~~eler~~~~~g~~Gvk~ 167 (342)
...+++.+-+.||++.++.+... ...+-..+++.+ +.-.+|+--++.+.. ...++++..++. ++.|+.|+-+
T Consensus 30 l~~li~~l~~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~-~t~~~i~~~~~a-~~~Gadav~~ 107 (303)
T PRK03620 30 YREHLEWLAPYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVETTAGRVPVIAGAGG-GTAQAIEYAQAA-ERAGADGILL 107 (303)
T ss_pred HHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCC-CHHHHHHHHHHH-HHhCCCEEEE
Confidence 46677788889999998876421 112223444433 444566544555554 445577766666 7899999987
Q ss_pred cCCCCCCCCcCCcHHHHHHHHHHhh-hCCeEEEEeccCCCCCHHHHHHHHHhCCCCcEEec
Q 019335 168 NPYLWPSGQQMTNEVGKAMFSKAGE-LGVPVGFMCMKGLNLHISEIEELCTEFPSTTVLLD 227 (342)
Q Consensus 168 ~~~~~~~g~~l~~~~~~~~~~~a~e-~~lpv~iH~~~~~~~~~~~l~~l~~~~P~lk~vl~ 227 (342)
.+.++ ...+++.+...|+...+ .++||.+.-..+....++.+.++++++|++.-|=+
T Consensus 108 ~pP~y---~~~~~~~i~~~f~~va~~~~lpi~lYn~~g~~l~~~~l~~L~~~~pni~giK~ 165 (303)
T PRK03620 108 LPPYL---TEAPQEGLAAHVEAVCKSTDLGVIVYNRDNAVLTADTLARLAERCPNLVGFKD 165 (303)
T ss_pred CCCCC---CCCCHHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEe
Confidence 76542 23456777777777555 68999887544433456778888888997654433
No 102
>PRK06380 metal-dependent hydrolase; Provisional
Probab=96.19 E-value=1.4 Score=42.93 Aligned_cols=123 Identities=6% Similarity=0.037 Sum_probs=63.9
Q ss_pred HHHhHHCCCceEEEeCCCCCccchHHHHHHHHhCCCcE-EEEEEcCCCC---cchHHHHHHHHHh---cCCceEEEecCC
Q 019335 98 LQCMEEASVDGALIVQPINHKFDHSLVTSVLKKYPSKF-VGCCLANPAE---DVIGIKQLEQLIL---KDGFRAVRFNPY 170 (342)
Q Consensus 98 l~~md~~GI~~~v~~~~~~~~~~N~~~~~~~~~~p~r~-~g~~~i~p~~---~~~~~~eler~~~---~~g~~Gvk~~~~ 170 (342)
+.+|-+.||+..+-+. ...+.+.+.+++..-|. .+...++... ....+++.+++++ ..+..-+.+.+.
T Consensus 104 ~~e~l~~G~Tt~~d~~-----~~~~~~~~a~~~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 178 (418)
T PRK06380 104 MYEMINSGITAFVDLY-----YSEDIIAKAAEELGIRAFLSWAVLDEEITTQKGDPLNNAENFIREHRNEELVTPSIGVQ 178 (418)
T ss_pred HHHHHhcCCeEEEccc-----cChHHHHHHHHHhCCeEEEecccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEECC
Confidence 4467788998654321 11244556666654343 2333444221 1112222333222 223222222221
Q ss_pred CCCCCCcCCcHHHHHHHHHHhhhCCeEEEEeccCCCCCHHHHHHHH-----------HhCC--CCcEEecccCCC
Q 019335 171 LWPSGQQMTNEVGKAMFSKAGELGVPVGFMCMKGLNLHISEIEELC-----------TEFP--STTVLLDHLAFC 232 (342)
Q Consensus 171 ~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH~~~~~~~~~~~l~~l~-----------~~~P--~lk~vl~H~G~~ 232 (342)
. ....+++.++.+++.|.++|+++.+|+.++ ..++.... .++. +.++++.|+.+.
T Consensus 179 ~---~~~~s~e~l~~~~~~A~~~g~~v~~H~~e~----~~~~~~~~~~~g~~~ie~~~~~g~l~~~~~~~H~~~l 246 (418)
T PRK06380 179 G---IYVANDETYLKAKEIAEKYDTIMHMHLSET----RKEVYDHVKRTGERPVEHLEKIGFLNSKLIAAHCVWA 246 (418)
T ss_pred C---CccCCHHHHHHHHHHHHHcCCCEEEEeCCc----HHHHHHHHHHhCCCHHHHHHHCCCCCCCeEEEEeecC
Confidence 1 123467899999999999999999999754 12222222 2221 347899998763
No 103
>PRK06886 hypothetical protein; Validated
Probab=96.12 E-value=1.3 Score=41.88 Aligned_cols=108 Identities=15% Similarity=0.009 Sum_probs=61.3
Q ss_pred hHHHHHHHHhCCCcEEE-EEEcCCCC---cchHHHHHHHHHhcCCceEEEecCCCCCCCCcCCcHHHHHHHHHHhhhCCe
Q 019335 121 HSLVTSVLKKYPSKFVG-CCLANPAE---DVIGIKQLEQLILKDGFRAVRFNPYLWPSGQQMTNEVGKAMFSKAGELGVP 196 (342)
Q Consensus 121 N~~~~~~~~~~p~r~~g-~~~i~p~~---~~~~~~eler~~~~~g~~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e~~lp 196 (342)
-+-+.++.+++.+++-- ++.+ |.+ .....+.+++.++..++.|-. |...........+.++.+++.|+++|++
T Consensus 101 ~~a~~~~r~~~~~~idlq~vaf-Pq~g~~~~~~~~l~~~al~~advvGGi--P~~~~~~~~~~~e~l~~~~~lA~~~g~~ 177 (329)
T PRK06886 101 IIAAHKAREVYKHDIILKFANQ-TLKGVIEPTAKKWFDIGSEMVDMIGGL--PYRDELDYGRGLEAMDILLDTAKSLGKM 177 (329)
T ss_pred HHHHHHHHHHhcCcceEEEEec-ChhhccCccHHHHHHHHHHhCCEEeCc--cCCcCCCCCCCHHHHHHHHHHHHHcCCC
Confidence 35678888888886532 2222 322 112345566654434444432 3210001123456799999999999999
Q ss_pred EEEEeccCCCCCHHHHHHHH---Hh--CCCCcEEecccCCC
Q 019335 197 VGFMCMKGLNLHISEIEELC---TE--FPSTTVLLDHLAFC 232 (342)
Q Consensus 197 v~iH~~~~~~~~~~~l~~l~---~~--~P~lk~vl~H~G~~ 232 (342)
|.+|+.+........+..++ .+ +-+ ++++.|+...
T Consensus 178 Id~Hlde~~~~~~~~le~l~~~~~~~Gl~g-rV~~sH~~~L 217 (329)
T PRK06886 178 VHVHVDQFNTPKEKETEQLCDKTIEHGMQG-RVVAIHGISI 217 (329)
T ss_pred eEEeECCCCchhHHHHHHHHHHHHHcCCCC-CEEEEEeccc
Confidence 99999864322222333333 23 334 7999999874
No 104
>PRK09228 guanine deaminase; Provisional
Probab=96.11 E-value=1.6 Score=42.87 Aligned_cols=216 Identities=17% Similarity=0.126 Sum_probs=104.7
Q ss_pred HHHhHHCCCceEEEeCCCCCccchHHHHHHHHhCCCcEE-EEEEcC---CC----CcchHHHHHHHHH---hcCCceEEE
Q 019335 98 LQCMEEASVDGALIVQPINHKFDHSLVTSVLKKYPSKFV-GCCLAN---PA----EDVIGIKQLEQLI---LKDGFRAVR 166 (342)
Q Consensus 98 l~~md~~GI~~~v~~~~~~~~~~N~~~~~~~~~~p~r~~-g~~~i~---p~----~~~~~~~eler~~---~~~g~~Gvk 166 (342)
+.+|-+.||+.++-+.. .+....+.+.+.+++..=|.+ +....+ |. ..++.+++.++.+ ...+..++.
T Consensus 121 ~~e~l~~G~Ttv~d~~~-~~~~~~~~~~~a~~~~GiR~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 199 (433)
T PRK09228 121 LDELLRNGTTTALVFGT-VHPQSVDALFEAAEARNMRMIAGKVLMDRNAPDGLRDTAESGYDDSKALIERWHGKGRLLYA 199 (433)
T ss_pred HHHHHhCCceEEEeccc-cCHHHHHHHHHHHHHcCCeEEeeeeeecCCCCcccccCHHHHHHHHHHHHHHHhCCCCceEE
Confidence 34577889988874422 122223455666666554543 223332 21 1222222332222 223444444
Q ss_pred ecCCCCCCCCcCCcHHHHHHHHHHhhh-CCeEEEEeccCCCCCHHHHHHHHHhCC---------------CCcEEecccC
Q 019335 167 FNPYLWPSGQQMTNEVGKAMFSKAGEL-GVPVGFMCMKGLNLHISEIEELCTEFP---------------STTVLLDHLA 230 (342)
Q Consensus 167 ~~~~~~~~g~~l~~~~~~~~~~~a~e~-~lpv~iH~~~~~~~~~~~l~~l~~~~P---------------~lk~vl~H~G 230 (342)
+.|.. ......+.+..+.+.|+++ |+++.+|+.++ ..+...+.++|+ +-++++.|+.
T Consensus 200 ~~p~~---~~t~s~~~l~~~~~lA~~~~~~~i~~Hl~E~----~~e~~~~~~~~g~~~~~~~~l~~~G~l~~~~~~~H~~ 272 (433)
T PRK09228 200 ITPRF---APTSTPEQLEAAGALAREHPDVWIQTHLSEN----LDEIAWVKELFPEARDYLDVYERYGLLGPRAVFAHCI 272 (433)
T ss_pred EECCc---CCcCCHHHHHHHHHHHHHCCCCceEEeecCC----hhHHHHHHHHcCCCCCHHHHHHHcCCCCCCeEEEecc
Confidence 44432 2334567899999999998 99999999854 223333333332 3478899988
Q ss_pred CCCCCCCchhhHhHHHHhcccCCCcEEEecCccccc-ccCCCCCCCchhHHHHHHHhcCCCcEEEccCCCCCCCCCChHh
Q 019335 231 FCKPPSNDEESLAFSNLLKLSRFPQVYVKFSALFRV-SRMPFPYQDLSSPLSQVVSSFGANRVMWGSDFPYVVPECGYKG 309 (342)
Q Consensus 231 ~~~p~~~~~~~~~~~~~~~l~~~~Nvy~~~S~~~~~-~~~~~~~~~~~~~l~~~i~~~G~dRilfGSD~P~~~~~~~~~~ 309 (342)
... . +++..+++. ++.+........ ...+ . .-+..+++. | -++.+|||.+.......+..
T Consensus 273 ~l~----~------~~~~~la~~-g~~v~~~P~sn~~lg~g-----~-~~~~~~~~~-G-v~v~lGtD~~~~~~~d~~~~ 333 (433)
T PRK09228 273 HLE----D------RERRRLAET-GAAIAFCPTSNLFLGSG-----L-FDLKRADAA-G-VRVGLGTDVGGGTSFSMLQT 333 (433)
T ss_pred CCC----H------HHHHHHHHc-CCeEEECCccHHhhcCC-----C-cCHHHHHHC-C-CeEEEecCCCCCCCCCHHHH
Confidence 632 1 112223332 233332211100 0111 1 124555555 5 58899999864322111111
Q ss_pred HHHHHHHHH--hcCCCCHHHHHHHHhHHHHHhcC
Q 019335 310 GREAASLIA--NEVPLSPSELEWIMGGTIMQLFQ 341 (342)
Q Consensus 310 ~~~~~~~~~--~~~~l~~~~~~~I~~~NA~rl~~ 341 (342)
......+. ....++.++.=+....|+.++++
T Consensus 334 -~~~~~~~~~~~~~~~~~~~~l~~aT~~~A~~lg 366 (433)
T PRK09228 334 -MNEAYKVQQLQGYRLSPFQAFYLATLGGARALG 366 (433)
T ss_pred -HHHHHHHhhcccCCCCHHHHHHHHhHHHHHHhC
Confidence 11111110 12346666555555666666553
No 105
>PRK07572 cytosine deaminase; Validated
Probab=96.08 E-value=1.6 Score=42.69 Aligned_cols=51 Identities=20% Similarity=0.210 Sum_probs=34.5
Q ss_pred HHHHHHHHHHhhhCCeEEEEeccCCCCC---HHHHHHHHHhC--CCCcEEecccCCC
Q 019335 181 EVGKAMFSKAGELGVPVGFMCMKGLNLH---ISEIEELCTEF--PSTTVLLDHLAFC 232 (342)
Q Consensus 181 ~~~~~~~~~a~e~~lpv~iH~~~~~~~~---~~~l~~l~~~~--P~lk~vl~H~G~~ 232 (342)
+.++.+++.|+++|++|.+|+.++.... +..+...+.++ -+ ++++.|+...
T Consensus 191 e~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~~~~~~~~G~~~-~v~~~H~~~l 246 (426)
T PRK07572 191 ESVRLLCEIAAERGLRVDMHCDESDDPLSRHIETLAAETQRLGLQG-RVAGSHLTSM 246 (426)
T ss_pred HHHHHHHHHHHHcCCCeEEEECCCCChhHHHHHHHHHHHHHhCCCC-CEEEEccchh
Confidence 7899999999999999999997542211 12223333333 23 6788999763
No 106
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=96.00 E-value=0.27 Score=45.51 Aligned_cols=126 Identities=10% Similarity=-0.001 Sum_probs=79.6
Q ss_pred ChHHHHHHhHHCCCceEEEeCCCC--C---ccchHHHHHH-HHhCCCcEEEEEEcCCCCcchHHHHHHHHHhcCCceEEE
Q 019335 93 HVDFLLQCMEEASVDGALIVQPIN--H---KFDHSLVTSV-LKKYPSKFVGCCLANPAEDVIGIKQLEQLILKDGFRAVR 166 (342)
Q Consensus 93 ~~~~ll~~md~~GI~~~v~~~~~~--~---~~~N~~~~~~-~~~~p~r~~g~~~i~p~~~~~~~~eler~~~~~g~~Gvk 166 (342)
..+.+++.+-+.||++.++..... + ..+-..+++. ++.-.+|+.-++.+.. ...++++..+++ ++.|+.|+-
T Consensus 22 ~l~~l~~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~~-~t~~~i~~a~~a-~~~Gad~v~ 99 (289)
T cd00951 22 AYRAHVEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETAGRVPVLAGAGY-GTATAIAYAQAA-EKAGADGIL 99 (289)
T ss_pred HHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCCEEEecCC-CHHHHHHHHHHH-HHhCCCEEE
Confidence 346677888889999998876421 1 1122234443 3333456544444543 445566666665 789999998
Q ss_pred ecCCCCCCCCcCCcHHHHHHHHHHhh-hCCeEEEEeccCCCCCHHHHHHHHHhCCCCc
Q 019335 167 FNPYLWPSGQQMTNEVGKAMFSKAGE-LGVPVGFMCMKGLNLHISEIEELCTEFPSTT 223 (342)
Q Consensus 167 ~~~~~~~~g~~l~~~~~~~~~~~a~e-~~lpv~iH~~~~~~~~~~~l~~l~~~~P~lk 223 (342)
+.+.++ ..++++.+...|+.+.+ .++||.+.-..+..-.++.+.++++++|++.
T Consensus 100 ~~pP~y---~~~~~~~i~~~f~~v~~~~~~pi~lYn~~g~~l~~~~l~~L~~~~pniv 154 (289)
T cd00951 100 LLPPYL---TEAPQEGLYAHVEAVCKSTDLGVIVYNRANAVLTADSLARLAERCPNLV 154 (289)
T ss_pred ECCCCC---CCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHhcCCCEE
Confidence 875432 23466777777766644 7899988754443345677888886699764
No 107
>PRK08392 hypothetical protein; Provisional
Probab=95.99 E-value=0.47 Score=41.85 Aligned_cols=35 Identities=26% Similarity=0.174 Sum_probs=27.5
Q ss_pred eeeeeeccCCCCccCCCCCCCCCCCCCCCCChHHHHHHhHHCCCceEEEeC
Q 019335 63 IDSHLHVWASPEEAADKFPYFPGQEPTLPGHVDFLLQCMEEASVDGALIVQ 113 (342)
Q Consensus 63 ID~H~Hl~~~~~~~~~~~p~~~~~~~~~~~~~~~ll~~md~~GI~~~v~~~ 113 (342)
||.|+|-..++ + ..+++++++...+.|++...+..
T Consensus 1 ~D~H~HT~~sd-----------~-----~~~~~e~v~~A~~~Gl~~i~iTd 35 (215)
T PRK08392 1 MDLHTHTVYSD-----------G-----IGSVRDNIAEAERKGLRLVGISD 35 (215)
T ss_pred CccccCCCCcC-----------C-----cCCHHHHHHHHHHcCCCEEEEcc
Confidence 79999976431 1 35789999999999999888764
No 108
>PLN02303 urease
Probab=95.95 E-value=0.05 Score=56.52 Aligned_cols=47 Identities=17% Similarity=0.162 Sum_probs=37.1
Q ss_pred HHHHHHHHhcCCceEEEecCCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEEec
Q 019335 150 IKQLEQLILKDGFRAVRFNPYLWPSGQQMTNEVGKAMFSKAGELGVPVGFMCM 202 (342)
Q Consensus 150 ~~eler~~~~~g~~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH~~ 202 (342)
.+++++++ +.|+.|++.+..+ ..+...+...+++|+++|++|.+|+.
T Consensus 472 l~eL~eli-eaGa~GfK~h~d~-----gvTpelL~raLe~AkelGVpVaIHAE 518 (837)
T PLN02303 472 PEGLHEII-KAGAMGLKLHEDW-----GTTPAAIDNCLDVAEEYDIQVTIHTD 518 (837)
T ss_pred HHHHHHHH-HcCcEEEEECCCC-----CCCHHHHHHHHHHHHHcCCEEEEecC
Confidence 45777764 6699999987431 24567899999999999999999965
No 109
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=95.95 E-value=0.31 Score=45.29 Aligned_cols=129 Identities=11% Similarity=-0.022 Sum_probs=81.4
Q ss_pred hHHHHHHhHHCCCceEEEeCCCC-----CccchHHHHHHH-HhCCCcEEEEEEcCCCCcchHHHHHHHHHhcCCceEEEe
Q 019335 94 VDFLLQCMEEASVDGALIVQPIN-----HKFDHSLVTSVL-KKYPSKFVGCCLANPAEDVIGIKQLEQLILKDGFRAVRF 167 (342)
Q Consensus 94 ~~~ll~~md~~GI~~~v~~~~~~-----~~~~N~~~~~~~-~~~p~r~~g~~~i~p~~~~~~~~eler~~~~~g~~Gvk~ 167 (342)
...+++.+-+.||++.++..... ...+-..+.+.+ +.-.+|+.-++.+.. ..+++++..+.+ ++.|+.++-+
T Consensus 28 l~~li~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g~~pvi~gv~~-~t~~ai~~a~~a-~~~Gadav~~ 105 (296)
T TIGR03249 28 YRENIEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAKGKVPVYTGVGG-NTSDAIEIARLA-EKAGADGYLL 105 (296)
T ss_pred HHHHHHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCc-cHHHHHHHHHHH-HHhCCCEEEE
Confidence 46677788889999999875421 112233444433 333556544444443 355577666666 7899999987
Q ss_pred cCCCCCCCCcCCcHHHHHHHHHHh-hhCCeEEEEeccCCCCCHHHHHHHHHhCCCCcEEec
Q 019335 168 NPYLWPSGQQMTNEVGKAMFSKAG-ELGVPVGFMCMKGLNLHISEIEELCTEFPSTTVLLD 227 (342)
Q Consensus 168 ~~~~~~~g~~l~~~~~~~~~~~a~-e~~lpv~iH~~~~~~~~~~~l~~l~~~~P~lk~vl~ 227 (342)
.+.++ ...+++.+...|+... ..++||.+.-..+..-.++.+.++++++|++.-|=+
T Consensus 106 ~pP~y---~~~s~~~i~~~f~~v~~a~~~pvilYn~~g~~l~~~~~~~La~~~~nvvgiKd 163 (296)
T TIGR03249 106 LPPYL---INGEQEGLYAHVEAVCESTDLGVIVYQRDNAVLNADTLERLADRCPNLVGFKD 163 (296)
T ss_pred CCCCC---CCCCHHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHhhCCCEEEEEe
Confidence 75432 2345667777777654 478998877544434457788889888998754444
No 110
>cd01304 FMDH_A Formylmethanofuran dehydrogenase (FMDH) subunit A; Methanogenic bacteria and archea derive the energy for autotrophic growth from methanogenesis, the reduction of CO2 with molecular hydrogen as the electron donor. FMDH catalyzes the first step in methanogenesis, the formyl-methanofuran synthesis. In this step, CO2 is bound to methanofuran and subsequently reduced to the formyl state with electrons derived from hydrogen.
Probab=95.88 E-value=1.1 Score=45.01 Aligned_cols=158 Identities=14% Similarity=0.170 Sum_probs=86.9
Q ss_pred HHHHHHHHHhhhCCeEEEEecc---CCCCCHH---HHHHHHHhCCC----CcEEecccCCCCCCCCchhhHhHH----HH
Q 019335 182 VGKAMFSKAGELGVPVGFMCMK---GLNLHIS---EIEELCTEFPS----TTVLLDHLAFCKPPSNDEESLAFS----NL 247 (342)
Q Consensus 182 ~~~~~~~~a~e~~lpv~iH~~~---~~~~~~~---~l~~l~~~~P~----lk~vl~H~G~~~p~~~~~~~~~~~----~~ 247 (342)
....+.+.++++|+|..+|.+. +.|...+ +..++++..|. -.+-+.|+.+.- ..++.+..|. ++
T Consensus 210 ii~~l~~~~~~lg~ph~iH~h~nnlg~pgn~~~t~~t~~~~~~~~~~~~~~~~h~tH~qfhs--yg~~~~~~~~s~a~~i 287 (541)
T cd01304 210 ILKGLAEANEELGLPHSIHVHCNNLGVPGNYETTLETMKAAEGVKPDPRRQVLHLTHVQFHS--YGGTSWRDFESGAERI 287 (541)
T ss_pred HHHHHHHHHHhcCCceEEEEccccCCCCCcHHHHHHHHHHhhcCCCccccceeEeeeeeEEe--eccCCcccHhHHHHHH
Confidence 5677888888899999999873 3344443 33444444541 136688886311 1112222232 23
Q ss_pred hc-ccCCCcEEEecCccc-c----cc-------------cCCC--------------CCC----CchhHHHHHHH-----
Q 019335 248 LK-LSRFPQVYVKFSALF-R----VS-------------RMPF--------------PYQ----DLSSPLSQVVS----- 285 (342)
Q Consensus 248 ~~-l~~~~Nvy~~~S~~~-~----~~-------------~~~~--------------~~~----~~~~~l~~~i~----- 285 (342)
.+ +.+.+||-+|...+. . .+ ...| |+. .....++.++-
T Consensus 288 ~~~~n~~~~it~D~G~v~f~~t~tmt~d~~~~~~~~~~~~~kw~~~d~e~e~g~Gvvp~~y~~k~~v~~lqwaiglEl~l 367 (541)
T cd01304 288 ADYVNANDHVTIDVGQVIFGETTTMTGDGPMQFDLHGLTGLKWVNCDIELETGSGVVPFIYSPKNPVNALQWAIGLELFL 367 (541)
T ss_pred HHHHHcCCCEEEEeCceecCCcEEEEccchhhcccccccCCceeeeeeEeccCCceEEeEecCCCCchHHHHHHHHHHHH
Confidence 33 346899999986541 0 00 1111 111 01112221211
Q ss_pred hc-CCCcEEEccCCCCCCCCCChHhHHHHHH------HHH--------h-------cCCCCHHHHHHHHhHHHHHhcC
Q 019335 286 SF-GANRVMWGSDFPYVVPECGYKGGREAAS------LIA--------N-------EVPLSPSELEWIMGGTIMQLFQ 341 (342)
Q Consensus 286 ~~-G~dRilfGSD~P~~~~~~~~~~~~~~~~------~~~--------~-------~~~l~~~~~~~I~~~NA~rl~~ 341 (342)
.. .+.|+|+.||.|...+...|++.+..+- +++ + ...++.++..+++..|.+++|+
T Consensus 368 l~~dp~~~~~tTDhPn~gpf~~YP~~i~~lm~~~~r~~~~~~~~~~~~~~~~l~~~~reLSLeei~~mtT~nPAKiLG 445 (541)
T cd01304 368 LIDDPWKVILTTDHPNGGPFTRYPRIIAWLMSKKFRAEEIATLHKWAQDRSALPGIDREYSLYEIAIMTRAGPAKLLG 445 (541)
T ss_pred HhCCcceEEeecCCCCCCCcccHHHHHHHHhCHHHHHHHHHhcCHHHHhhccccCCCCCCCHHHHHHHHHHHHHHHhC
Confidence 11 4789999999999887777876543211 011 0 1245778888888999988875
No 111
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=95.83 E-value=0.37 Score=44.70 Aligned_cols=130 Identities=7% Similarity=0.012 Sum_probs=82.4
Q ss_pred ChHHHHHHhHHCCCceEEEeCCCC--C---ccchHHHHH-HHHhCCCcEEEEEEcCCCCcchHHHHHHHHHhcCCceEEE
Q 019335 93 HVDFLLQCMEEASVDGALIVQPIN--H---KFDHSLVTS-VLKKYPSKFVGCCLANPAEDVIGIKQLEQLILKDGFRAVR 166 (342)
Q Consensus 93 ~~~~ll~~md~~GI~~~v~~~~~~--~---~~~N~~~~~-~~~~~p~r~~g~~~i~p~~~~~~~~eler~~~~~g~~Gvk 166 (342)
..+.+++.+-+.||++.++..... . ..+-..+++ .++...+|+.-++.+-.....++++..+.. ++.|+.|+-
T Consensus 22 ~l~~lv~~~~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~g~~pvi~gv~~~~t~~ai~~a~~A-~~~Gad~v~ 100 (294)
T TIGR02313 22 ALRELIEFQIEGGSHAISVGGTSGEPGSLTLEERKQAIENAIDQIAGRIPFAPGTGALNHDETLELTKFA-EEAGADAAM 100 (294)
T ss_pred HHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCcEEEECCcchHHHHHHHHHHH-HHcCCCEEE
Confidence 346677788889999988876421 1 111223343 344455676555555544444566666665 789999998
Q ss_pred ecCCCCCCCCcCCcHHHHHHHHHHh-hh-CCeEEEEecc---CCCCCHHHHHHHHHhCCCCcEEe
Q 019335 167 FNPYLWPSGQQMTNEVGKAMFSKAG-EL-GVPVGFMCMK---GLNLHISEIEELCTEFPSTTVLL 226 (342)
Q Consensus 167 ~~~~~~~~g~~l~~~~~~~~~~~a~-e~-~lpv~iH~~~---~~~~~~~~l~~l~~~~P~lk~vl 226 (342)
+.+.++ ..+++..+...|+... .. ++||.+.-.. +....++.+.++++++|++.-|=
T Consensus 101 v~pP~y---~~~~~~~l~~~f~~ia~a~~~lpv~iYn~P~~tg~~l~~~~l~~L~~~~pnv~giK 162 (294)
T TIGR02313 101 VIVPYY---NKPNQEALYDHFAEVADAVPDFPIIIYNIPGRAAQEIAPKTMARLRKDCPNIVGAK 162 (294)
T ss_pred EcCccC---CCCCHHHHHHHHHHHHHhccCCCEEEEeCchhcCcCCCHHHHHHHHhhCCCEEEEE
Confidence 876432 3345677777777654 56 8999887432 22344678889998999875444
No 112
>PTZ00124 adenosine deaminase; Provisional
Probab=95.67 E-value=0.9 Score=43.46 Aligned_cols=163 Identities=10% Similarity=0.078 Sum_probs=84.0
Q ss_pred HHHHHHHHHh-cCCceEEEecCCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEEeccC-CCCCHHHHHHHHHhCCCCcEEe
Q 019335 149 GIKQLEQLIL-KDGFRAVRFNPYLWPSGQQMTNEVGKAMFSKAGELGVPVGFMCMKG-LNLHISEIEELCTEFPSTTVLL 226 (342)
Q Consensus 149 ~~~eler~~~-~~g~~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH~~~~-~~~~~~~l~~l~~~~P~lk~vl 226 (342)
+.+.++.+.+ ..+++||.+.... . +.+.+.+.|++|.+.|+++.+|+|+. .+.....+...+..+. .+ =|
T Consensus 179 a~e~~~~a~~~~~~vvGiDLaG~E--~----~~~~f~~~f~~Ar~~Gl~~t~HaGE~~~~~~~~~v~~ai~~l~-~~-RI 250 (362)
T PTZ00124 179 IKESADFCLKHKADFVGFDHAGHE--V----DLKPFKDIFDYVREAGVNLTVHAGEDVTLPNLNTLYSAIQVLK-VK-RI 250 (362)
T ss_pred HHHHHHHHHhccCCeEEEeccCCC--C----CcHHHHHHHHHHHHCCCCEEEEeCCCCCCCcchhHHHHHHHhC-CC-cc
Confidence 4444454443 2368899887542 1 23568999999999999999999973 2233333333333332 22 35
Q ss_pred cccCCCCCCCCchhhHhHHHHhcccCCCcEEEecCcccccccCCCCCCCchhHHHHHHHhcCCCcEEEccCCCCCCCCCC
Q 019335 227 DHLAFCKPPSNDEESLAFSNLLKLSRFPQVYVKFSALFRVSRMPFPYQDLSSPLSQVVSSFGANRVMWGSDFPYVVPECG 306 (342)
Q Consensus 227 ~H~G~~~p~~~~~~~~~~~~~~~l~~~~Nvy~~~S~~~~~~~~~~~~~~~~~~l~~~i~~~G~dRilfGSD~P~~~~~~~ 306 (342)
+|+-... .. .++++..+..|+-++++..-.......+... ..-++.+++. |. +|..+||=|..... +
T Consensus 251 GHG~~~~---~d------~~l~~~l~~~~I~lEvCPtSN~~~~~v~~~~-~HPi~~l~~~-Gv-~v~InTDDp~~~~t-~ 317 (362)
T PTZ00124 251 GHGIRVA---ES------QELIDMVKEKDILLEVCPISNVLLNNAKSMD-THPIRKLYDA-GV-KVSVNSDDPGMFLT-N 317 (362)
T ss_pred ccccccC---CC------HHHHHHHHHcCCeEEECCcchhhhhcCCchh-hHHHHHHHHC-CC-cEEEeCCCccccCC-C
Confidence 5765521 11 1122222222344444432111000001001 1236666655 55 78889998876443 1
Q ss_pred hHhHHHHHHHHHhcCCCCHHHHHHHHhHHH
Q 019335 307 YKGGREAASLIANEVPLSPSELEWIMGGTI 336 (342)
Q Consensus 307 ~~~~~~~~~~~~~~~~l~~~~~~~I~~~NA 336 (342)
... .+..+.+..+++.++..++ .+||
T Consensus 318 l~~---Ey~~~~~~~gls~~~l~~l-~~na 343 (362)
T PTZ00124 318 IND---DYEELYTHLNFTLADFMKM-NEWA 343 (362)
T ss_pred hhH---HHHHHHHHcCCCHHHHHHH-HHHH
Confidence 111 1222223468888888877 4555
No 113
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=95.54 E-value=0.46 Score=43.75 Aligned_cols=126 Identities=9% Similarity=-0.002 Sum_probs=78.6
Q ss_pred ChHHHHHHhHHCCCceEEEeCCCC-----CccchHHHHHHHHhCCCcEEEEEEcCCCCcchHHHHHHHHHhcCCceEEEe
Q 019335 93 HVDFLLQCMEEASVDGALIVQPIN-----HKFDHSLVTSVLKKYPSKFVGCCLANPAEDVIGIKQLEQLILKDGFRAVRF 167 (342)
Q Consensus 93 ~~~~ll~~md~~GI~~~v~~~~~~-----~~~~N~~~~~~~~~~p~r~~g~~~i~p~~~~~~~~eler~~~~~g~~Gvk~ 167 (342)
....+++.+-+.||++.++..... ...+-..+.+.+.+.-+++ ++.+.-....++++..+.+ ++.|..|+-+
T Consensus 21 ~~~~li~~l~~~Gv~Gl~~~GstGE~~~Lt~eEr~~l~~~~~~~~~~v--i~gvg~~~~~~ai~~a~~a-~~~Gad~v~v 97 (279)
T cd00953 21 KFKKHCENLISKGIDYVFVAGTTGLGPSLSFQEKLELLKAYSDITDKV--IFQVGSLNLEESIELARAA-KSFGIYAIAS 97 (279)
T ss_pred HHHHHHHHHHHcCCcEEEEcccCCCcccCCHHHHHHHHHHHHHHcCCE--EEEeCcCCHHHHHHHHHHH-HHcCCCEEEE
Confidence 457778888899999999876421 1112233444444333443 2333333334466655555 7899999987
Q ss_pred cCCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEEec---cCCCCCHHHHHHHHHhCCCCcE
Q 019335 168 NPYLWPSGQQMTNEVGKAMFSKAGELGVPVGFMCM---KGLNLHISEIEELCTEFPSTTV 224 (342)
Q Consensus 168 ~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH~~---~~~~~~~~~l~~l~~~~P~lk~ 224 (342)
.+.++ -...+++.....|+...+ ++||.+.-. .+....++.+.++++.+|++.-
T Consensus 98 ~~P~y--~~~~~~~~i~~yf~~v~~-~lpv~iYn~P~~tg~~l~~~~l~~L~~~~p~vvg 154 (279)
T cd00953 98 LPPYY--FPGIPEEWLIKYFTDISS-PYPTFIYNYPKATGYDINARMAKEIKKAGGDIIG 154 (279)
T ss_pred eCCcC--CCCCCHHHHHHHHHHHHh-cCCEEEEeCccccCCCCCHHHHHHHHhcCCCEEE
Confidence 64332 112356788888888888 999998743 2223456788889888897643
No 114
>cd01300 YtcJ_like YtcJ_like metal dependent amidohydrolases. YtcJ is a Bacillus subtilis ORF of unknown function. The Arabidopsis homolog LAF3 has been identified as a factor required for photochrome A signalling.
Probab=95.48 E-value=0.084 Score=52.41 Aligned_cols=150 Identities=17% Similarity=0.177 Sum_probs=77.9
Q ss_pred CCcHHHHHHHHHHhhhCCeEEEEeccCCC--CCHHHHHHHHHhCC--CCcEEecccCCCCCCCCchhhHhHHHHhcccCC
Q 019335 178 MTNEVGKAMFSKAGELGVPVGFMCMKGLN--LHISEIEELCTEFP--STTVLLDHLAFCKPPSNDEESLAFSNLLKLSRF 253 (342)
Q Consensus 178 l~~~~~~~~~~~a~e~~lpv~iH~~~~~~--~~~~~l~~l~~~~P--~lk~vl~H~G~~~p~~~~~~~~~~~~~~~l~~~ 253 (342)
++.+.+..+++.|.++|++|.+|+..... ..+..+..+..++| +.+.++.|+....+ ..++.+ ++.
T Consensus 292 ~~~e~l~~~~~~a~~~g~~v~~Ha~gd~~i~~~l~~~~~~~~~~g~~~~r~~i~H~~~~~~-------~~~~~l---~~~ 361 (479)
T cd01300 292 ISPEELEELVRAADEAGLQVAIHAIGDRAVDTVLDALEAALKDNPRADHRHRIEHAQLVSP-------DDIPRF---AKL 361 (479)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEecHHHHHHHHHHHHHHHHhcCCCCCCceeeecccCCH-------HHHHHH---HHc
Confidence 46788999999999999999999863100 01233444555555 67889999987421 122222 222
Q ss_pred CcEEEecCcccccccCC------CC--CCCchhHHHHHHHhcCCCcEEEccCCCCCCCCCChHhHHHHHHHHH-------
Q 019335 254 PQVYVKFSALFRVSRMP------FP--YQDLSSPLSQVVSSFGANRVMWGSDFPYVVPECGYKGGREAASLIA------- 318 (342)
Q Consensus 254 ~Nvy~~~S~~~~~~~~~------~~--~~~~~~~l~~~i~~~G~dRilfGSD~P~~~~~~~~~~~~~~~~~~~------- 318 (342)
++++.+...+...... .. ......-++.+++. |. ++.+|||+|..... .+......+....
T Consensus 362 -gv~~~~~P~~~~~~~~~~~~~~lg~~~~~~~~p~~~~~~~-Gv-~v~lGSD~~~~~~~-p~~~~~~av~~~~~~~~~~~ 437 (479)
T cd01300 362 -GVIASVQPNHLYSDGDAAEDRRLGEERAKRSYPFRSLLDA-GV-PVALGSDAPVAPPD-PLLGIWAAVTRKTPGGGVLG 437 (479)
T ss_pred -CCceEeCcccccCchHHHHHhcccHHHHhcCchHHHHHHC-CC-eeeccCCCCCCCCC-HHHHHHHHheeeCCCCCCCC
Confidence 2444433221100000 00 00001224555544 54 88999999976432 2222111111000
Q ss_pred -hcCCCCHHHHHHHHhHHHHHhcC
Q 019335 319 -NEVPLSPSELEWIMGGTIMQLFQ 341 (342)
Q Consensus 319 -~~~~l~~~~~~~I~~~NA~rl~~ 341 (342)
....++.++.=+....|+.++++
T Consensus 438 ~~~~~ls~~~al~~~T~~~A~~lg 461 (479)
T cd01300 438 NPEERLSLEEALRAYTIGAAYAIG 461 (479)
T ss_pred CccccCCHHHHHHHHHHHHHHHhc
Confidence 11246766666666677776664
No 115
>cd01296 Imidazolone-5PH Imidazolonepropionase/imidazolone-5-propionate hydrolase (Imidazolone-5PH) catalyzes the third step in the histidine degradation pathway, the hydrolysis of (S)-3-(5-oxo-4,5-dihydro-3H-imidazol-4-yl)propanoate to N-formimidoyl-L-glutamate. In bacteria, the enzyme is part of histidine utilization (hut) operon.
Probab=95.35 E-value=0.53 Score=44.87 Aligned_cols=152 Identities=18% Similarity=0.182 Sum_probs=81.7
Q ss_pred cCCceEEEecCCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEEeccCCCCCHHHHHHHHHhCCCCcEEecccCCCCCCCCc
Q 019335 159 KDGFRAVRFNPYLWPSGQQMTNEVGKAMFSKAGELGVPVGFMCMKGLNLHISEIEELCTEFPSTTVLLDHLAFCKPPSND 238 (342)
Q Consensus 159 ~~g~~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH~~~~~~~~~~~l~~l~~~~P~lk~vl~H~G~~~p~~~~ 238 (342)
+.+..|+++... ....+.+.+..+++.|.++|++|.+|+..... ...+. .+.++.. ..+.|+.... .
T Consensus 175 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~A~~~g~~v~~H~~e~~~--~~~~~-~~~~~g~--~~i~H~~~~~----~ 241 (371)
T cd01296 175 ENLADFCDVFCE----KGAFSLEQSRRILEAAKEAGLPVKIHADELSN--IGGAE-LAAELGA--LSADHLEHTS----D 241 (371)
T ss_pred hCCCCEEEEeec----CCccCHHHHHHHHHHHHHCCCeEEEEEcCcCC--CCHHH-HHHHcCC--CeeHHhcCCC----H
Confidence 466788887543 22345678999999999999999999974311 11222 2334432 2467887632 1
Q ss_pred hhhHhHHHHhcccCCCcEEEecCccccc-ccCCCCCCCchhHHHHHHHhcCCCcEEEccCC-CCCCCCCChHhHHHHHHH
Q 019335 239 EESLAFSNLLKLSRFPQVYVKFSALFRV-SRMPFPYQDLSSPLSQVVSSFGANRVMWGSDF-PYVVPECGYKGGREAASL 316 (342)
Q Consensus 239 ~~~~~~~~~~~l~~~~Nvy~~~S~~~~~-~~~~~~~~~~~~~l~~~i~~~G~dRilfGSD~-P~~~~~~~~~~~~~~~~~ 316 (342)
+.+..+++. ++.+........ .... ..-++.+++. |. ++.+|||+ |..... ......+..
T Consensus 242 ------~~i~~la~~-g~~v~~~P~~~~~l~~~------~~~~~~l~~~-Gv-~v~lgsD~~p~~~~~---~~l~~~~~~ 303 (371)
T cd01296 242 ------EGIAALAEA-GTVAVLLPGTAFSLRET------YPPARKLIDA-GV-PVALGTDFNPGSSPT---SSMPLVMHL 303 (371)
T ss_pred ------HHHHHHHHc-CCeEEEChHHHHHhCCC------CCCHHHHHHC-CC-cEEEecCCCCCCChH---HHHHHHHHH
Confidence 112223332 244333211100 0111 1225566655 55 79999997 543211 112222322
Q ss_pred HHhcCCCCHHHHHHHHhHHHHHhcC
Q 019335 317 IANEVPLSPSELEWIMGGTIMQLFQ 341 (342)
Q Consensus 317 ~~~~~~l~~~~~~~I~~~NA~rl~~ 341 (342)
.....+++.++.-+....|+.++++
T Consensus 304 ~~~~~~l~~~~al~~aT~~~A~~lg 328 (371)
T cd01296 304 ACRLMRMTPEEALTAATINAAAALG 328 (371)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHhC
Confidence 2223578888777777788877764
No 116
>TIGR02318 phosphono_phnM phosphonate metabolism protein PhnM. This family consists of proteins from in the PhnM family. PhnM is a a protein associated with phosphonate utilization in a number of bacterial species. In Pseudomonas stutzeri WM88, a protein that is part of a system for the oxidation of phosphites (another form of reduced phosphorous compound) scores between trusted and noise cutoffs.
Probab=95.23 E-value=3.1 Score=40.04 Aligned_cols=55 Identities=9% Similarity=0.006 Sum_probs=32.2
Q ss_pred HHHHHHHhcCCCcEEEccCCCCCCCCCChHhHHHHHHHHHhcCCCCHHHHHHHHhHHHHHhcC
Q 019335 279 PLSQVVSSFGANRVMWGSDFPYVVPECGYKGGREAASLIANEVPLSPSELEWIMGGTIMQLFQ 341 (342)
Q Consensus 279 ~l~~~i~~~G~dRilfGSD~P~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~I~~~NA~rl~~ 341 (342)
.+..+++. |. ..++|||+-.. ..+.. .+.......+++.++.-+....|+.++++
T Consensus 284 ~l~~~~~~-G~-~~~l~SD~~p~---~~l~~---~~~~~~~~~gl~~~~al~~~T~npA~~lg 338 (376)
T TIGR02318 284 SARELAHE-GL-LDVLASDYVPA---SLLLA---AFQLADDVEGIPLPQAVKMVTKNPARAVG 338 (376)
T ss_pred HHHHHHHC-CC-cEEEEcCCCcH---HHHHH---HHHHHHhhcCCCHHHHHHHHhHHHHHHcC
Confidence 34455554 54 57999998221 11111 11111112368888888888999998875
No 117
>COG0804 UreC Urea amidohydrolase (urease) alpha subunit [Amino acid transport and metabolism]
Probab=95.08 E-value=0.56 Score=44.71 Aligned_cols=132 Identities=15% Similarity=0.128 Sum_probs=74.7
Q ss_pred CeeeeeeeccCCCCccCCCCCCCCCCCCCCCCChHHHHHHhHHCCCceEEEeCCCC----------Cccc-hHHHHHHHH
Q 019335 61 KIIDSHLHVWASPEEAADKFPYFPGQEPTLPGHVDFLLQCMEEASVDGALIVQPIN----------HKFD-HSLVTSVLK 129 (342)
Q Consensus 61 ~iID~H~Hl~~~~~~~~~~~p~~~~~~~~~~~~~~~ll~~md~~GI~~~v~~~~~~----------~~~~-N~~~~~~~~ 129 (342)
-=||+|+|+..|+ .++..-..||+..+=-...+ .+.. -..|++.++
T Consensus 130 GGiDtHiHfI~Pq-----------------------qi~~Al~sGiTtmiGGGtGpa~Gt~aTT~TpG~w~i~rMl~a~d 186 (568)
T COG0804 130 GGIDTHIHFICPQ-----------------------QIEEALASGITTMIGGGTGPADGTNATTCTPGPWHIARMLQAAD 186 (568)
T ss_pred ccccceeEEecHH-----------------------HHHHHHhcCcEEEecCccCCCCCcccccccCCHHHHHHHHHhhh
Confidence 4489999998652 23333455886554322111 1112 356777777
Q ss_pred hCCCcEEEEEE-cCCCCcchHHHHHHHHHhcCCceEEEecCCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEEeccCCCCC
Q 019335 130 KYPSKFVGCCL-ANPAEDVIGIKQLEQLILKDGFRAVRFNPYLWPSGQQMTNEVGKAMFSKAGELGVPVGFMCMKGLNLH 208 (342)
Q Consensus 130 ~~p~r~~g~~~-i~p~~~~~~~~eler~~~~~g~~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH~~~~~~~~ 208 (342)
.+|=. +|+.. =|-..+. -|.+.+ +.|..|+|+|-. | |.. -...+--++.|.|+++.|.+|+..-....
T Consensus 187 ~~p~N-~g~lgKGn~s~~~----~L~Eqi-~aGa~GlKlHED-W--G~T--paaI~~~L~VAD~~DvqVaiHtDTLNEsG 255 (568)
T COG0804 187 GLPMN-IGFLGKGNASNPA----PLAEQI-EAGAIGLKLHED-W--GAT--PAAIDTCLSVADEYDVQVAIHTDTLNESG 255 (568)
T ss_pred cCcee-eEEeecCCCCCch----hHHHHH-hhccceeEeecc-c--CCC--HHHHHHHHhhhhhhceEEEEeeccccccc
Confidence 88843 34432 2322232 233332 679999999976 3 322 24677889999999999999985321111
Q ss_pred HHHHHHHHHhCCCCcEEecc
Q 019335 209 ISEIEELCTEFPSTTVLLDH 228 (342)
Q Consensus 209 ~~~l~~l~~~~P~lk~vl~H 228 (342)
.+++.+..+-+-.+---|
T Consensus 256 --fvEdTi~A~~gRtIHtyH 273 (568)
T COG0804 256 --FVEDTIAAIKGRTIHTYH 273 (568)
T ss_pred --chHhHHHHhcCceeEEee
Confidence 244455555444443333
No 118
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=94.92 E-value=1.2 Score=40.91 Aligned_cols=126 Identities=17% Similarity=0.199 Sum_probs=78.8
Q ss_pred ChHHHHHHhHHCCCceEEEeCCCC--C---ccchHHHHHHHH-hCCCcEEEEEEcCCCCcchHHHHHHHHHhcCCceEEE
Q 019335 93 HVDFLLQCMEEASVDGALIVQPIN--H---KFDHSLVTSVLK-KYPSKFVGCCLANPAEDVIGIKQLEQLILKDGFRAVR 166 (342)
Q Consensus 93 ~~~~ll~~md~~GI~~~v~~~~~~--~---~~~N~~~~~~~~-~~p~r~~g~~~i~p~~~~~~~~eler~~~~~g~~Gvk 166 (342)
....+++.+-+.||++.++..... + ..+-..+++.+. .-.+++.-++.+......++++..+.. ++.|+.|+-
T Consensus 19 ~~~~~i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a-~~~Gad~v~ 97 (281)
T cd00408 19 ALRRLVEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVGANSTREAIELARHA-EEAGADGVL 97 (281)
T ss_pred HHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHhCCCCeEEEecCCccHHHHHHHHHHH-HHcCCCEEE
Confidence 346677788889999998876421 1 112233444443 334566555666555545566666555 789999999
Q ss_pred ecCCCCCCCCcCCcHHHHHHHHHHhh-hCCeEEEEecc---CCCCCHHHHHHHHHhCCCCc
Q 019335 167 FNPYLWPSGQQMTNEVGKAMFSKAGE-LGVPVGFMCMK---GLNLHISEIEELCTEFPSTT 223 (342)
Q Consensus 167 ~~~~~~~~g~~l~~~~~~~~~~~a~e-~~lpv~iH~~~---~~~~~~~~l~~l~~~~P~lk 223 (342)
+.+..+ ...+++.+...|+...+ .++||.++-.. +..-.++.+.++++ +|++.
T Consensus 98 v~pP~y---~~~~~~~~~~~~~~ia~~~~~pi~iYn~P~~tg~~l~~~~~~~L~~-~~~v~ 154 (281)
T cd00408 98 VVPPYY---NKPSQEGIVAHFKAVADASDLPVILYNIPGRTGVDLSPETIARLAE-HPNIV 154 (281)
T ss_pred ECCCcC---CCCCHHHHHHHHHHHHhcCCCCEEEEECccccCCCCCHHHHHHHhc-CCCEE
Confidence 876432 23566777777766555 69999888542 22334667777775 78654
No 119
>PRK09045 N-ethylammeline chlorohydrolase; Provisional
Probab=94.89 E-value=2.3 Score=41.79 Aligned_cols=143 Identities=13% Similarity=0.109 Sum_probs=74.2
Q ss_pred CcCCcHHHHHHHHHHhhhCCeEEEEeccCCCCCHHHHHHHHHhC-------------CCCcEEecccCCCCCCCCchhhH
Q 019335 176 QQMTNEVGKAMFSKAGELGVPVGFMCMKGLNLHISEIEELCTEF-------------PSTTVLLDHLAFCKPPSNDEESL 242 (342)
Q Consensus 176 ~~l~~~~~~~~~~~a~e~~lpv~iH~~~~~~~~~~~l~~l~~~~-------------P~lk~vl~H~G~~~p~~~~~~~~ 242 (342)
.....+.+..+++.|.++|+++.+|+..+ ..++....+++ -+-++++.|+.... .+
T Consensus 197 ~~~~~~~l~~~~~~A~~~g~~v~~H~~e~----~~~~~~~~~~~g~~~~~~l~~~g~l~~r~~~~H~~~l~----~~--- 265 (443)
T PRK09045 197 YTVSDENLERIRTLAEQLDLPIHIHLHET----AQEIADSLKQHGQRPLARLARLGLLGPRLIAVHMTQLT----DA--- 265 (443)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEeecCc----HHHHHHHHHHhCCCHHHHHHHcCCCCCCeEEEEecCCC----HH---
Confidence 35677899999999999999999998643 22333333322 13467888998632 11
Q ss_pred hHHHHhcccCCCcEEEecCccccc-ccCCCCCCCchhHHHHHHHhcCCCcEEEccCCCCCCCCCCh-HhHHHH--HHHHH
Q 019335 243 AFSNLLKLSRFPQVYVKFSALFRV-SRMPFPYQDLSSPLSQVVSSFGANRVMWGSDFPYVVPECGY-KGGREA--ASLIA 318 (342)
Q Consensus 243 ~~~~~~~l~~~~Nvy~~~S~~~~~-~~~~~~~~~~~~~l~~~i~~~G~dRilfGSD~P~~~~~~~~-~~~~~~--~~~~~ 318 (342)
. +..+++. ++.+........ ...+ . .-++.+++. | =++.+|||+|......+. ...... +....
T Consensus 266 ~---~~~la~~-g~~i~~~P~~~~~~~~~-----~-~~~~~l~~~-G-v~v~lGtD~~~~~~~~~~~~~~~~a~~~~~~~ 333 (443)
T PRK09045 266 E---IALLAET-GCSVVHCPESNLKLASG-----F-CPVAKLLQA-G-VNVALGTDGAASNNDLDLFGEMRTAALLAKAV 333 (443)
T ss_pred H---HHHHHHc-CCeEEECHHHHhhhccC-----C-CcHHHHHHC-C-CeEEEecCCCCCCCCccHHHHHHHHHHHHhhc
Confidence 1 2223322 233322211000 0000 1 125566654 3 368999998864332221 111111 10100
Q ss_pred --hcCCCCHHHHHHHHhHHHHHhcC
Q 019335 319 --NEVPLSPSELEWIMGGTIMQLFQ 341 (342)
Q Consensus 319 --~~~~l~~~~~~~I~~~NA~rl~~ 341 (342)
....++.++.=+....|+.+.++
T Consensus 334 ~~~~~~~~~~~al~~~T~~~A~~lg 358 (443)
T PRK09045 334 AGDATALPAHTALRMATLNGARALG 358 (443)
T ss_pred cCCCCcCCHHHHHHHHhHHHHHHcC
Confidence 01246777766777777777664
No 120
>cd00443 ADA_AMPD Adenosine/AMP deaminase. Adenosine deaminases (ADAs) are present in pro- and eukaryotic organisms and catalyze the zinc dependent irreversible deamination of adenosine nucleosides to inosine nucleosides and ammonia. The eukaryotic AMP deaminase catalyzes a similar reaction leading to the hydrolytic removal of an amino group at the 6 position of the adenine nucleotide ring, a branch point in the adenylate catabolic pathway.
Probab=94.83 E-value=3.4 Score=38.47 Aligned_cols=151 Identities=15% Similarity=0.119 Sum_probs=79.9
Q ss_pred CceEEEecCCCCCCCCcCCcHHHHHHHHHHhhhC-CeEEEEeccCCCCCHHHHHHHHHhCCCCcEEecccCCCCCCCCch
Q 019335 161 GFRAVRFNPYLWPSGQQMTNEVGKAMFSKAGELG-VPVGFMCMKGLNLHISEIEELCTEFPSTTVLLDHLAFCKPPSNDE 239 (342)
Q Consensus 161 g~~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e~~-lpv~iH~~~~~~~~~~~l~~l~~~~P~lk~vl~H~G~~~p~~~~~ 239 (342)
+++|+.+.... .+....-..+.+.|+.+.+.| +++.+|+|+. .....+.+.+.-.+ --|+|+-... ..
T Consensus 135 ~vvG~Dl~g~E--~~~~~~~~~f~~~~~~ar~~g~l~~t~HaGE~--~~~~~v~~~~~~~~---~RIgHg~~~~----~~ 203 (305)
T cd00443 135 YVVGIDLVGDE--SKGENPLRDFYSYYEYARRLGLLGLTLHCGET--GNREELLQALLLLP---DRIGHGIFLL----KH 203 (305)
T ss_pred CEEEEEcCCCC--CCCCCCHHHHHHHHHHHHHcCCcceEEeecCC--CChHHHHHHHHhcc---ceeeceEecC----CC
Confidence 58999887542 111112357899999999999 9999999964 23344444444333 2567876531 10
Q ss_pred hhHhHHHHhcccCCCcEEEecCcccccccCCC-CCCCchhHHHHHHHhcCCCcEEEccCCCCCCCCCChHhHHHHHHHHH
Q 019335 240 ESLAFSNLLKLSRFPQVYVKFSALFRVSRMPF-PYQDLSSPLSQVVSSFGANRVMWGSDFPYVVPECGYKGGREAASLIA 318 (342)
Q Consensus 240 ~~~~~~~~~~l~~~~Nvy~~~S~~~~~~~~~~-~~~~~~~~l~~~i~~~G~dRilfGSD~P~~~~~~~~~~~~~~~~~~~ 318 (342)
.+++++.+..++-+.++..-....... .+. ..| ++.+++. |. +|-.|||-|..... +.. +.+....
T Consensus 204 -----p~~~~~l~~~~i~ie~CP~SN~~~~~~~~~~-~hP-~~~~~~~-G~-~v~i~TDd~~~~~~-~l~---~E~~~~~ 270 (305)
T cd00443 204 -----PELIYLVKLRNIPIEVCPTSNVVLGTVQSYE-KHP-FMRFFKA-GL-PVSLSTDDPGIFGT-SLS---EEYSLAA 270 (305)
T ss_pred -----HHHHHHHHHcCCEEEECcchhhhhcCCCChh-hCh-HHHHHHC-CC-eEEEeCCCCcccCC-ChH---HHHHHHH
Confidence 112222122245555443211100000 011 112 6666665 54 88999999876443 211 1122222
Q ss_pred hcCCCCHHHHHHHHhHHH
Q 019335 319 NEVPLSPSELEWIMGGTI 336 (342)
Q Consensus 319 ~~~~l~~~~~~~I~~~NA 336 (342)
...+++.++..++. .|+
T Consensus 271 ~~~~l~~~~l~~l~-~ns 287 (305)
T cd00443 271 KTFGLTFEDLCELN-RNS 287 (305)
T ss_pred HHcCcCHHHHHHHH-HHH
Confidence 34568888877764 444
No 121
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=94.81 E-value=0.68 Score=42.73 Aligned_cols=128 Identities=14% Similarity=0.165 Sum_probs=78.6
Q ss_pred hHHHHHHhHHCCCceEEEeCCCC--Cc---cchHHHHHHH-HhCCCcEEEEEEcCCCCcchHHHHHHHHHhcCCceEEEe
Q 019335 94 VDFLLQCMEEASVDGALIVQPIN--HK---FDHSLVTSVL-KKYPSKFVGCCLANPAEDVIGIKQLEQLILKDGFRAVRF 167 (342)
Q Consensus 94 ~~~ll~~md~~GI~~~v~~~~~~--~~---~~N~~~~~~~-~~~p~r~~g~~~i~p~~~~~~~~eler~~~~~g~~Gvk~ 167 (342)
...+++.+-+.||++.++..... +. .+-..+++.+ +.-++|+.-++.+.-...+++++..+.+ ++.|+.|+-+
T Consensus 24 ~~~~i~~l~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~st~~~i~~a~~a-~~~Gad~v~v 102 (289)
T PF00701_consen 24 LKRLIDFLIEAGVDGLVVLGSTGEFYSLTDEERKELLEIVVEAAAGRVPVIAGVGANSTEEAIELARHA-QDAGADAVLV 102 (289)
T ss_dssp HHHHHHHHHHTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHHHHTTSSEEEEEEESSSHHHHHHHHHHH-HHTT-SEEEE
T ss_pred HHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHccCceEEEecCcchhHHHHHHHHHHH-hhcCceEEEE
Confidence 45667777789999988876421 11 1122344443 3345565545555544445576666665 7899999987
Q ss_pred cCCCCCCCCcCCcHHHHHHHHHHhh-hCCeEEEEecc---CCCCCHHHHHHHHHhCCCCcEEe
Q 019335 168 NPYLWPSGQQMTNEVGKAMFSKAGE-LGVPVGFMCMK---GLNLHISEIEELCTEFPSTTVLL 226 (342)
Q Consensus 168 ~~~~~~~g~~l~~~~~~~~~~~a~e-~~lpv~iH~~~---~~~~~~~~l~~l~~~~P~lk~vl 226 (342)
.+.++ ...+++.+...|+...+ -++|+.++-.. +..-.+..+.++++ +|++.-+=
T Consensus 103 ~~P~~---~~~s~~~l~~y~~~ia~~~~~pi~iYn~P~~tg~~ls~~~l~~L~~-~~nv~giK 161 (289)
T PF00701_consen 103 IPPYY---FKPSQEELIDYFRAIADATDLPIIIYNNPARTGNDLSPETLARLAK-IPNVVGIK 161 (289)
T ss_dssp EESTS---SSCCHHHHHHHHHHHHHHSSSEEEEEEBHHHHSSTSHHHHHHHHHT-STTEEEEE
T ss_pred ecccc---ccchhhHHHHHHHHHHhhcCCCEEEEECCCccccCCCHHHHHHHhc-CCcEEEEE
Confidence 64332 23566677777776555 68999998653 32334567888888 99865443
No 122
>KOG2584 consensus Dihydroorotase and related enzymes [Nucleotide transport and metabolism]
Probab=94.76 E-value=0.28 Score=47.06 Aligned_cols=62 Identities=11% Similarity=-0.015 Sum_probs=49.6
Q ss_pred EcCCCCcchHHHHHHHHHhcCCceEEEecCCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEEecc
Q 019335 140 LANPAEDVIGIKQLEQLILKDGFRAVRFNPYLWPSGQQMTNEVGKAMFSKAGELGVPVGFMCMK 203 (342)
Q Consensus 140 ~i~p~~~~~~~~eler~~~~~g~~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH~~~ 203 (342)
.|.++.+. ..+|++-++++.|+.++++...+. +-..+.|..+++.++.|.++|....+|.-.
T Consensus 139 ~It~W~~~-v~eem~~l~~ekGvnsF~~fmayk-~~~~v~d~~lye~l~~~~~lgala~vHAEn 200 (522)
T KOG2584|consen 139 GITWWSPS-VKEEMEILVKEKGVNSFKFFMAYK-DLYMVRDSELYEALKVCAELGALAMVHAEN 200 (522)
T ss_pred eeeecCcc-hHHHHHHHhhhcCcceEEeeeeec-cccccCHHHHHHHHHHHhhcchhheehhhc
Confidence 45565543 557888888999999999887652 234578999999999999999999999853
No 123
>PLN02417 dihydrodipicolinate synthase
Probab=94.71 E-value=0.78 Score=42.24 Aligned_cols=126 Identities=14% Similarity=0.137 Sum_probs=80.3
Q ss_pred hHHHHHHhHHCCCceEEEeCCCC--C---ccchHHHHHH-HHhCCCcEEEEEEcCCCCcchHHHHHHHHHhcCCceEEEe
Q 019335 94 VDFLLQCMEEASVDGALIVQPIN--H---KFDHSLVTSV-LKKYPSKFVGCCLANPAEDVIGIKQLEQLILKDGFRAVRF 167 (342)
Q Consensus 94 ~~~ll~~md~~GI~~~v~~~~~~--~---~~~N~~~~~~-~~~~p~r~~g~~~i~p~~~~~~~~eler~~~~~g~~Gvk~ 167 (342)
...+++.+-+.||++.++..... + ..+-..+++. ++.-.+|+.-++.+.-....++++..+.. ++.|+.|+-+
T Consensus 24 ~~~~i~~l~~~Gv~Gi~~~GstGE~~~ls~~Er~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~~a~~a-~~~Gadav~~ 102 (280)
T PLN02417 24 YDSLVNMQIENGAEGLIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGKIKVIGNTGSNSTREAIHATEQG-FAVGMHAALH 102 (280)
T ss_pred HHHHHHHHHHcCCCEEEECccCcchhhCCHHHHHHHHHHHHHHhCCCCcEEEECCCccHHHHHHHHHHH-HHcCCCEEEE
Confidence 46677777789999999876421 1 1112234443 34445676555666554445577666666 7899999988
Q ss_pred cCCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEEecc---CCCCCHHHHHHHHHhCCCCcEE
Q 019335 168 NPYLWPSGQQMTNEVGKAMFSKAGELGVPVGFMCMK---GLNLHISEIEELCTEFPSTTVL 225 (342)
Q Consensus 168 ~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH~~~---~~~~~~~~l~~l~~~~P~lk~v 225 (342)
.+.++ ...+++.+...|+...+.. ||.+.-.. +..-.+..+.+++ ++|++.-|
T Consensus 103 ~~P~y---~~~~~~~i~~~f~~va~~~-pi~lYn~P~~tg~~l~~~~l~~l~-~~pni~gi 158 (280)
T PLN02417 103 INPYY---GKTSQEGLIKHFETVLDMG-PTIIYNVPGRTGQDIPPEVIFKIA-QHPNFAGV 158 (280)
T ss_pred cCCcc---CCCCHHHHHHHHHHHHhhC-CEEEEEChhHhCcCCCHHHHHHHh-cCCCEEEE
Confidence 75432 2356788888999888887 99877432 2233456777777 58876433
No 124
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=94.62 E-value=0.91 Score=42.43 Aligned_cols=128 Identities=13% Similarity=0.200 Sum_probs=79.4
Q ss_pred ChHHHHHHhHHCCCceEEEeCCCC-----CccchHHHHH-HHHhCCCcEEEEEEcCCCCcchHHHHHHHHHhcCCceEEE
Q 019335 93 HVDFLLQCMEEASVDGALIVQPIN-----HKFDHSLVTS-VLKKYPSKFVGCCLANPAEDVIGIKQLEQLILKDGFRAVR 166 (342)
Q Consensus 93 ~~~~ll~~md~~GI~~~v~~~~~~-----~~~~N~~~~~-~~~~~p~r~~g~~~i~p~~~~~~~~eler~~~~~g~~Gvk 166 (342)
....+++.+-+.||++.++....- ...+-..+++ .++.-.+|+.-++.+.-...+++++..+.+ ++.|+.|+-
T Consensus 30 ~l~~lv~~li~~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~grvpvi~Gv~~~~t~~ai~~a~~A-~~~Gad~vl 108 (309)
T cd00952 30 ETARLVERLIAAGVDGILTMGTFGECATLTWEEKQAFVATVVETVAGRVPVFVGATTLNTRDTIARTRAL-LDLGADGTM 108 (309)
T ss_pred HHHHHHHHHHHcCCCEEEECcccccchhCCHHHHHHHHHHHHHHhCCCCCEEEEeccCCHHHHHHHHHHH-HHhCCCEEE
Confidence 456778888889999999876421 1112233443 333445666555555544444466656555 788999998
Q ss_pred ecCCCCCCCCcCCcHHHHHHHHHHhh-h-CCeEEEEecc---CCCCCHHHHHHHHHhCCCCcEE
Q 019335 167 FNPYLWPSGQQMTNEVGKAMFSKAGE-L-GVPVGFMCMK---GLNLHISEIEELCTEFPSTTVL 225 (342)
Q Consensus 167 ~~~~~~~~g~~l~~~~~~~~~~~a~e-~-~lpv~iH~~~---~~~~~~~~l~~l~~~~P~lk~v 225 (342)
+.+.++ ..++++.....|+...+ . ++||.+.-.. +....++.+.+++ ++|++.-|
T Consensus 109 v~~P~y---~~~~~~~l~~yf~~va~a~~~lPv~iYn~P~~tg~~l~~~~l~~L~-~~pnivgi 168 (309)
T cd00952 109 LGRPMW---LPLDVDTAVQFYRDVAEAVPEMAIAIYANPEAFKFDFPRAAWAELA-QIPQVVAA 168 (309)
T ss_pred ECCCcC---CCCCHHHHHHHHHHHHHhCCCCcEEEEcCchhcCCCCCHHHHHHHh-cCCCEEEE
Confidence 875432 23466778888887655 5 5999887432 2233466777777 68876543
No 125
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=94.44 E-value=1.5 Score=40.30 Aligned_cols=125 Identities=16% Similarity=0.193 Sum_probs=77.7
Q ss_pred hHHHHHHhHHCCCceEEEeCCCC-----CccchHHHHHHH-HhCCCcEEEEEEcCCCCcchHHHHHHHHHhcCCceEEEe
Q 019335 94 VDFLLQCMEEASVDGALIVQPIN-----HKFDHSLVTSVL-KKYPSKFVGCCLANPAEDVIGIKQLEQLILKDGFRAVRF 167 (342)
Q Consensus 94 ~~~ll~~md~~GI~~~v~~~~~~-----~~~~N~~~~~~~-~~~p~r~~g~~~i~p~~~~~~~~eler~~~~~g~~Gvk~ 167 (342)
...+++.+-+.||++.++..... ...+-..+++.+ +...+|+.-++.+.....+++++..+.. ++.|+.||-+
T Consensus 23 ~~~~i~~l~~~Gv~gl~v~GstGE~~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~~~~a~~a-~~~G~d~v~~ 101 (284)
T cd00950 23 LERLIEFQIENGTDGLVVCGTTGESPTLSDEEHEAVIEAVVEAVNGRVPVIAGTGSNNTAEAIELTKRA-EKAGADAALV 101 (284)
T ss_pred HHHHHHHHHHcCCCEEEECCCCcchhhCCHHHHHHHHHHHHHHhCCCCcEEeccCCccHHHHHHHHHHH-HHcCCCEEEE
Confidence 45667778889999998875421 111222334333 3344566555555554445566666555 7899999998
Q ss_pred cCCCCCCCCcCCcHHHHHHHHHHhh-hCCeEEEEecc---CCCCCHHHHHHHHHhCCCCc
Q 019335 168 NPYLWPSGQQMTNEVGKAMFSKAGE-LGVPVGFMCMK---GLNLHISEIEELCTEFPSTT 223 (342)
Q Consensus 168 ~~~~~~~g~~l~~~~~~~~~~~a~e-~~lpv~iH~~~---~~~~~~~~l~~l~~~~P~lk 223 (342)
.+..+ ...+++.+..+|+...+ .++||.++-.. +..-.+..+.++++ .|++.
T Consensus 102 ~~P~~---~~~~~~~l~~~~~~ia~~~~~pi~lYn~P~~~g~~ls~~~~~~L~~-~p~v~ 157 (284)
T cd00950 102 VTPYY---NKPSQEGLYAHFKAIAEATDLPVILYNVPGRTGVNIEPETVLRLAE-HPNIV 157 (284)
T ss_pred ccccc---CCCCHHHHHHHHHHHHhcCCCCEEEEEChhHhCCCCCHHHHHHHhc-CCCEE
Confidence 75432 23456777777777655 69999988532 22334667888884 68754
No 126
>PRK09230 cytosine deaminase; Provisional
Probab=94.38 E-value=0.74 Score=45.08 Aligned_cols=53 Identities=13% Similarity=0.086 Sum_probs=38.9
Q ss_pred cHHHHHHHHHHhhhCCeEEEEeccCCCCC---HHHHHHHHHhCC-CCcEEecccCCC
Q 019335 180 NEVGKAMFSKAGELGVPVGFMCMKGLNLH---ISEIEELCTEFP-STTVLLDHLAFC 232 (342)
Q Consensus 180 ~~~~~~~~~~a~e~~lpv~iH~~~~~~~~---~~~l~~l~~~~P-~lk~vl~H~G~~ 232 (342)
.+.+..+++.|+++|+++.+|+.+..... ...+.++++++- +-+++++|+.+.
T Consensus 194 ~e~l~~~~~~A~~~g~~~~~H~~E~~~~~~~~~~~~~~~~~~~gl~~~v~~~H~~~l 250 (426)
T PRK09230 194 VESLHKAFALAQKYDRLIDVHCDEIDDEQSRFVETVAALAHREGMGARVTASHTTAM 250 (426)
T ss_pred HHHHHHHHHHHHHhCCCcEEEECCCCCcchHHHHHHHHHHHHhCCCCCEEEEecCch
Confidence 56799999999999999999998643211 334556666663 237899999873
No 127
>TIGR01224 hutI imidazolonepropionase. This enzyme catalyzes the third step in histidine degradation.
Probab=94.35 E-value=1.3 Score=42.41 Aligned_cols=150 Identities=17% Similarity=0.136 Sum_probs=78.0
Q ss_pred CceEEEecCCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEEeccCCCCCHHHHHHHHHhCCCCcEEecccCCCCCCCCchh
Q 019335 161 GFRAVRFNPYLWPSGQQMTNEVGKAMFSKAGELGVPVGFMCMKGLNLHISEIEELCTEFPSTTVLLDHLAFCKPPSNDEE 240 (342)
Q Consensus 161 g~~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH~~~~~~~~~~~l~~l~~~~P~lk~vl~H~G~~~p~~~~~~ 240 (342)
++.|+++.... .....+.+..+++.|.++|++|.+|+..... ...+. .+.+...+ .+.|+.... .
T Consensus 181 ~v~~~~~~~~~----~~~~~~~~~~~~~~A~~~g~~v~~H~~e~~~--~~~~~-~~~~~g~~--~~~H~~~~~----~-- 245 (377)
T TIGR01224 181 LASFADVFCEA----GVFSVEQSRRILQAAQEAGLPVKLHAEELSN--LGGAE-LAAKLGAV--SADHLEHAS----D-- 245 (377)
T ss_pred CCCeeEEEecC----CCcCHHHHHHHHHHHHHCCCCEEEEecCCCC--CCHHH-HHHHcCCC--ccHHHhcCC----H--
Confidence 46777644321 2234568999999999999999999974211 11122 22334433 366887631 1
Q ss_pred hHhHHHHhcccCCCcEEEecCcccccc-cCCCCCCCchhHHHHHHHhcCCCcEEEccCCCC-CCCCCChHhHHHHHHHHH
Q 019335 241 SLAFSNLLKLSRFPQVYVKFSALFRVS-RMPFPYQDLSSPLSQVVSSFGANRVMWGSDFPY-VVPECGYKGGREAASLIA 318 (342)
Q Consensus 241 ~~~~~~~~~l~~~~Nvy~~~S~~~~~~-~~~~~~~~~~~~l~~~i~~~G~dRilfGSD~P~-~~~~~~~~~~~~~~~~~~ 318 (342)
+.+..+++. ++.+......... ... . .-++.+++. |. ++.+|||.+. ..+ +......+....
T Consensus 246 ----~~l~~la~~-g~~~~~~P~~~~~l~~~-----~-~p~~~l~~~-Gv-~v~lgTD~~~~~~~---~~~~~~~~~~~~ 309 (377)
T TIGR01224 246 ----AGIKALAEA-GTVAVLLPGTTFYLRET-----Y-PPARQLIDY-GV-PVALATDLNPGSSP---TLSMQLIMSLAC 309 (377)
T ss_pred ----HHHHHHHhc-CCEEEECchHHHhcCCc-----C-ccHHHHHHC-CC-CEEEECCCCCCCCh---hHHHHHHHHHHH
Confidence 112223332 3444332211100 001 1 225666654 54 7999999632 221 222222222222
Q ss_pred hcCCCCHHHHHHHHhHHHHHhcC
Q 019335 319 NEVPLSPSELEWIMGGTIMQLFQ 341 (342)
Q Consensus 319 ~~~~l~~~~~~~I~~~NA~rl~~ 341 (342)
...+++.++.-+....|+.++++
T Consensus 310 ~~~~ls~~eal~~~T~~~A~~lg 332 (377)
T TIGR01224 310 RLMKMTPEEALHAATVNAAYALG 332 (377)
T ss_pred HhcCCCHHHHHHHHHHHHHHHhC
Confidence 23578888888877788877764
No 128
>PRK15446 phosphonate metabolism protein PhnM; Provisional
Probab=94.19 E-value=5.7 Score=38.31 Aligned_cols=54 Identities=13% Similarity=0.041 Sum_probs=33.8
Q ss_pred HHHHHHHhcCCCcEEEccCCCCCCCCCChHhHHHHHHHHHhcCCCCHHHHHHHHhHHHHHhcC
Q 019335 279 PLSQVVSSFGANRVMWGSDFPYVVPECGYKGGREAASLIANEVPLSPSELEWIMGGTIMQLFQ 341 (342)
Q Consensus 279 ~l~~~i~~~G~dRilfGSD~P~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~I~~~NA~rl~~ 341 (342)
.+.++++. |. .+.+|||+.... .+. .+..+....+++.++.=+....|+.++++
T Consensus 289 ~~~~~~~~-Gv-~~~lgSD~~p~~---~~~----~~~~~~~~~gls~~~al~~~T~npA~~lg 342 (383)
T PRK15446 289 SALDLAAA-GL-LDILSSDYYPAS---LLD----AAFRLADDGGLDLPQAVALVTANPARAAG 342 (383)
T ss_pred hHHHHHHC-CC-cEEEEcCCChhh---HHH----HHHHHHHhcCCCHHHHHHHHhHHHHHHcC
Confidence 35555555 53 579999973211 111 12222234578999999999999999885
No 129
>COG1001 AdeC Adenine deaminase [Nucleotide transport and metabolism]
Probab=94.17 E-value=3.8 Score=41.22 Aligned_cols=226 Identities=17% Similarity=0.105 Sum_probs=135.8
Q ss_pred CeeeeeeeccCCCCccCCCCCCCCCCCCCCCCChHHHHHHhHHCCCceEEEeCCC----CCccc-hHHHHHHHHhCCCcE
Q 019335 61 KIIDSHLHVWASPEEAADKFPYFPGQEPTLPGHVDFLLQCMEEASVDGALIVQPI----NHKFD-HSLVTSVLKKYPSKF 135 (342)
Q Consensus 61 ~iID~H~Hl~~~~~~~~~~~p~~~~~~~~~~~~~~~ll~~md~~GI~~~v~~~~~----~~~~~-N~~~~~~~~~~p~r~ 135 (342)
-.||+|+|+=++ -.++.++-+.--..|++..|. .|- ..+.+ -+|+++.+++-|=++
T Consensus 78 GfID~H~HIESS------------------m~tP~~FA~~Vlp~GtTtvV~-DPHEIaNV~G~~Gi~~ml~~a~~~pl~~ 138 (584)
T COG1001 78 GFIDAHLHIESS------------------MLTPSEFARAVLPHGTTTVVS-DPHEIANVLGEDGIRFMLDEAKETPLKV 138 (584)
T ss_pred ceeecceecccc------------------ccCHHHHHHHhhccCceEEee-CcHHHHhhccHHHHHHHHHHHhhCCeEE
Confidence 579999998532 246667767666789987764 431 12222 479999999999665
Q ss_pred EEEE-EcCCCC----c--chHHHHHHHHHhcCCceEEEecCCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEEeccCCCCC
Q 019335 136 VGCC-LANPAE----D--VIGIKQLEQLILKDGFRAVRFNPYLWPSGQQMTNEVGKAMFSKAGELGVPVGFMCMKGLNLH 208 (342)
Q Consensus 136 ~g~~-~i~p~~----~--~~~~~eler~~~~~g~~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH~~~~~~~~ 208 (342)
+..+ +.-|.. . .-..+.++++++.+.+.|+....++ + |---.|+.+..-++.+.+.|.+|.=|+.. ..
T Consensus 139 ~~~~pScVPat~~Et~Ga~l~a~~i~e~~~~p~Vigl~E~Mn~-p-gVi~~D~~~l~kl~a~~~~~k~VdGHapg---l~ 213 (584)
T COG1001 139 YVMLPSCVPATPFETSGAELTAEDIKELLEHPEVIGLGEMMNF-P-GVIEGDPDMLAKLEAARKAGKPVDGHAPG---LS 213 (584)
T ss_pred EEecccCccCCccccCCceecHHHHHHHhhCCCccchhhhcCC-c-hhccCCHHHHHHHHHHHHcCCeecccCCC---CC
Confidence 5432 222221 1 1235788888888999999866553 2 44556889999999999999999888642 11
Q ss_pred HHHHHHHHHhCCCCcEEecccCCCCCCCCchhhHhHHHH-hcccCCCcEEEecC--cccccccCCCCCCCchhHHHHHHH
Q 019335 209 ISEIEELCTEFPSTTVLLDHLAFCKPPSNDEESLAFSNL-LKLSRFPQVYVKFS--ALFRVSRMPFPYQDLSSPLSQVVS 285 (342)
Q Consensus 209 ~~~l~~l~~~~P~lk~vl~H~G~~~p~~~~~~~~~~~~~-~~l~~~~Nvy~~~S--~~~~~~~~~~~~~~~~~~l~~~i~ 285 (342)
-.++......-+ --+|=+.. . +++ .+|. .+ +|+-+- ... .++ ..+-.++.
T Consensus 214 g~~Ln~Y~aaGi----~tDHE~~t-----~------EEa~~klr-~G-m~i~iReGS~a---------~dl-~~l~~~i~ 266 (584)
T COG1001 214 GKELNAYIAAGI----STDHESTT-----A------EEALEKLR-LG-MKIMIREGSAA---------KDL-AALLPAIT 266 (584)
T ss_pred hHHHHHHHhcCC----CcCcccCC-----H------HHHHHHHh-CC-cEEEEEcCchh---------hhH-HHHHHHHh
Confidence 234444444332 23455431 1 222 2232 11 443321 111 122 44556677
Q ss_pred hcCCCcEEEccCCCCCC--C-CCChHhHHHHHHHHHhcCCCCHHHHHHHHhHHHHHhcC
Q 019335 286 SFGANRVMWGSDFPYVV--P-ECGYKGGREAASLIANEVPLSPSELEWIMGGTIMQLFQ 341 (342)
Q Consensus 286 ~~G~dRilfGSD~P~~~--~-~~~~~~~~~~~~~~~~~~~l~~~~~~~I~~~NA~rl~~ 341 (342)
..|.+|+||-||=-+.. . ++... +.++... ..++++-+.=+...=|+.+-||
T Consensus 267 e~~~~~~~lcTDD~~p~dl~~eGhld---~~vR~Ai-~~Gv~p~~a~qmAtiN~A~~~g 321 (584)
T COG1001 267 ELGSRRVMLCTDDRHPDDLLEEGHLD---RLVRRAI-EEGVDPLDAYQMATINPAEHYG 321 (584)
T ss_pred hcCCceEEEECCCCChhHhhhcCCHH---HHHHHHH-HcCCCHHHHHHHHhcCHHHHcC
Confidence 77889999999943332 1 12222 2233333 3689888888888888888875
No 130
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=94.16 E-value=2 Score=39.75 Aligned_cols=129 Identities=12% Similarity=0.140 Sum_probs=78.4
Q ss_pred ChHHHHHHhHHCCCceEEEeCCCC--C---ccchHHHHHH-HHhCCCcEEEEEEcCCCCcchHHHHHHHHHhcCCceEEE
Q 019335 93 HVDFLLQCMEEASVDGALIVQPIN--H---KFDHSLVTSV-LKKYPSKFVGCCLANPAEDVIGIKQLEQLILKDGFRAVR 166 (342)
Q Consensus 93 ~~~~ll~~md~~GI~~~v~~~~~~--~---~~~N~~~~~~-~~~~p~r~~g~~~i~p~~~~~~~~eler~~~~~g~~Gvk 166 (342)
....+++.+-+.||++.++..... + ..+-..+++. ++.-++|+.-++.+-....+++++..+.+ ++.|+.|+-
T Consensus 23 ~l~~~i~~l~~~Gv~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a-~~~G~d~v~ 101 (292)
T PRK03170 23 ALRKLVDYLIANGTDGLVVVGTTGESPTLTHEEHEELIRAVVEAVNGRVPVIAGTGSNSTAEAIELTKFA-EKAGADGAL 101 (292)
T ss_pred HHHHHHHHHHHcCCCEEEECCcCCccccCCHHHHHHHHHHHHHHhCCCCcEEeecCCchHHHHHHHHHHH-HHcCCCEEE
Confidence 346677788889999998765421 1 1122233333 33345565445555544445577766666 789999999
Q ss_pred ecCCCCCCCCcCCcHHHHHHHHHHh-hhCCeEEEEecc---CCCCCHHHHHHHHHhCCCCcEEe
Q 019335 167 FNPYLWPSGQQMTNEVGKAMFSKAG-ELGVPVGFMCMK---GLNLHISEIEELCTEFPSTTVLL 226 (342)
Q Consensus 167 ~~~~~~~~g~~l~~~~~~~~~~~a~-e~~lpv~iH~~~---~~~~~~~~l~~l~~~~P~lk~vl 226 (342)
+.+..+ ..++++.+...|+... ..++||.+.-.. +..-.++.+.++. ++|++..+=
T Consensus 102 ~~pP~~---~~~~~~~i~~~~~~ia~~~~~pv~lYn~P~~~g~~l~~~~~~~L~-~~p~v~giK 161 (292)
T PRK03170 102 VVTPYY---NKPTQEGLYQHFKAIAEATDLPIILYNVPGRTGVDILPETVARLA-EHPNIVGIK 161 (292)
T ss_pred ECCCcC---CCCCHHHHHHHHHHHHhcCCCCEEEEECccccCCCCCHHHHHHHH-cCCCEEEEE
Confidence 875432 2345666777776654 468999888532 2223456677774 788764443
No 131
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=93.97 E-value=1.9 Score=39.93 Aligned_cols=130 Identities=13% Similarity=0.125 Sum_probs=79.7
Q ss_pred ChHHHHHHhHH-CCCceEEEeCCCC--C---ccchHHHHH-HHHhCCCcEEEEEEcCCCCcchHHHHHHHHHhcCCceEE
Q 019335 93 HVDFLLQCMEE-ASVDGALIVQPIN--H---KFDHSLVTS-VLKKYPSKFVGCCLANPAEDVIGIKQLEQLILKDGFRAV 165 (342)
Q Consensus 93 ~~~~ll~~md~-~GI~~~v~~~~~~--~---~~~N~~~~~-~~~~~p~r~~g~~~i~p~~~~~~~~eler~~~~~g~~Gv 165 (342)
....+++.+-+ .||++.++..... + ..+-..+++ .++.-++|+.-++.+.-...+++++..+.+ ++.|+.|+
T Consensus 25 ~~~~li~~l~~~~Gv~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~~~~~~~viagvg~~~t~~ai~~a~~a-~~~Gad~v 103 (293)
T PRK04147 25 GLRRLVRFNIEKQGIDGLYVGGSTGEAFLLSTEEKKQVLEIVAEEAKGKVKLIAQVGSVNTAEAQELAKYA-TELGYDAI 103 (293)
T ss_pred HHHHHHHHHHhcCCCCEEEECCCccccccCCHHHHHHHHHHHHHHhCCCCCEEecCCCCCHHHHHHHHHHH-HHcCCCEE
Confidence 34667777778 9999998876421 1 111223333 334445676555666544445566666555 78999999
Q ss_pred EecCCCCCCCCcCCcHHHHHHHHHHh-hhCCeEEEEecc---CCCCCHHHHHHHHHhCCCCcEEec
Q 019335 166 RFNPYLWPSGQQMTNEVGKAMFSKAG-ELGVPVGFMCMK---GLNLHISEIEELCTEFPSTTVLLD 227 (342)
Q Consensus 166 k~~~~~~~~g~~l~~~~~~~~~~~a~-e~~lpv~iH~~~---~~~~~~~~l~~l~~~~P~lk~vl~ 227 (342)
-+.+.++ ...+++.+...|+... ..++||.+.-.. +....++.+.+++ ++|++.-|=+
T Consensus 104 ~v~~P~y---~~~~~~~l~~~f~~va~a~~lPv~iYn~P~~tg~~l~~~~l~~L~-~~pnvvgiK~ 165 (293)
T PRK04147 104 SAVTPFY---YPFSFEEICDYYREIIDSADNPMIVYNIPALTGVNLSLDQFNELF-TLPKVIGVKQ 165 (293)
T ss_pred EEeCCcC---CCCCHHHHHHHHHHHHHhCCCCEEEEeCchhhccCCCHHHHHHHh-cCCCEEEEEe
Confidence 8775432 2345566777777654 468999887431 2233466788887 6887654443
No 132
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=93.96 E-value=2.5 Score=39.07 Aligned_cols=128 Identities=13% Similarity=0.149 Sum_probs=78.1
Q ss_pred ChHHHHHHhHHC-CCceEEEeCCCC-----CccchHHHHH-HHHhCCCcEEEEEEcCCCCcchHHHHHHHHHhcCCceEE
Q 019335 93 HVDFLLQCMEEA-SVDGALIVQPIN-----HKFDHSLVTS-VLKKYPSKFVGCCLANPAEDVIGIKQLEQLILKDGFRAV 165 (342)
Q Consensus 93 ~~~~ll~~md~~-GI~~~v~~~~~~-----~~~~N~~~~~-~~~~~p~r~~g~~~i~p~~~~~~~~eler~~~~~g~~Gv 165 (342)
....+++.+-+. |+++.++..... ...+-..+++ .++.-.+|+.-++.+.-...+++++..+.+ ++.|+.|+
T Consensus 22 ~~~~~i~~l~~~~Gv~gi~~~GstGE~~~Lt~~Er~~~~~~~~~~~~~~~~viagv~~~~~~~ai~~a~~a-~~~Gad~v 100 (288)
T cd00954 22 VLRAIVDYLIEKQGVDGLYVNGSTGEGFLLSVEERKQIAEIVAEAAKGKVTLIAHVGSLNLKESQELAKHA-EELGYDAI 100 (288)
T ss_pred HHHHHHHHHHhcCCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCeEEeccCCCCHHHHHHHHHHH-HHcCCCEE
Confidence 346677777788 999988775421 1112223444 333445666555666544444466555555 78999999
Q ss_pred EecCCCCCCCCcCCcHHHHHHHHHHh-hh-CCeEEEEecc---CCCCCHHHHHHHHHhCCCCcEE
Q 019335 166 RFNPYLWPSGQQMTNEVGKAMFSKAG-EL-GVPVGFMCMK---GLNLHISEIEELCTEFPSTTVL 225 (342)
Q Consensus 166 k~~~~~~~~g~~l~~~~~~~~~~~a~-e~-~lpv~iH~~~---~~~~~~~~l~~l~~~~P~lk~v 225 (342)
-+.+..+ ..++++.+...|+... .. ++||.+.-.. +..-.++.+.++++ +|++.-+
T Consensus 101 ~~~~P~y---~~~~~~~i~~~~~~v~~a~~~lpi~iYn~P~~tg~~l~~~~~~~L~~-~pnivgi 161 (288)
T cd00954 101 SAITPFY---YKFSFEEIKDYYREIIAAAASLPMIIYHIPALTGVNLTLEQFLELFE-IPNVIGV 161 (288)
T ss_pred EEeCCCC---CCCCHHHHHHHHHHHHHhcCCCCEEEEeCccccCCCCCHHHHHHHhc-CCCEEEE
Confidence 8764432 2356677788777754 46 8999887431 22334667888884 8976533
No 133
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=93.85 E-value=2.6 Score=38.78 Aligned_cols=125 Identities=14% Similarity=0.133 Sum_probs=75.8
Q ss_pred ChHHHHHHhHHCCCceEEEeCCCC--C---ccchHHHHHHH-HhCCCcEEEEEEcCCCCcchHHHHHHHHHhcCCceEEE
Q 019335 93 HVDFLLQCMEEASVDGALIVQPIN--H---KFDHSLVTSVL-KKYPSKFVGCCLANPAEDVIGIKQLEQLILKDGFRAVR 166 (342)
Q Consensus 93 ~~~~ll~~md~~GI~~~v~~~~~~--~---~~~N~~~~~~~-~~~p~r~~g~~~i~p~~~~~~~~eler~~~~~g~~Gvk 166 (342)
....+++.+-+.||++.++..... + ..+-..+.+.+ +.-.+|+.-++.+.....+++++..++. ++.|+.|+-
T Consensus 20 ~~~~~i~~l~~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~s~~~~i~~a~~a-~~~Gad~v~ 98 (285)
T TIGR00674 20 ALEKLIDFQIENGTDAIVVVGTTGESPTLSHEEHKKVIEFVVDLVNGRVPVIAGTGSNATEEAISLTKFA-EDVGADGFL 98 (285)
T ss_pred HHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCeEEEeCCCccHHHHHHHHHHH-HHcCCCEEE
Confidence 346677788889999999875421 1 11122334333 3334565545555544444566666555 789999999
Q ss_pred ecCCCCCCCCcCCcHHHHHHHHHHh-hhCCeEEEEecc---CCCCCHHHHHHHHHhCCCC
Q 019335 167 FNPYLWPSGQQMTNEVGKAMFSKAG-ELGVPVGFMCMK---GLNLHISEIEELCTEFPST 222 (342)
Q Consensus 167 ~~~~~~~~g~~l~~~~~~~~~~~a~-e~~lpv~iH~~~---~~~~~~~~l~~l~~~~P~l 222 (342)
+.+..+ ..+++..+..+|+... ..++||.+.-.. +..-.+..+.+++ ++|++
T Consensus 99 v~pP~y---~~~~~~~i~~~~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~-~~~~v 154 (285)
T TIGR00674 99 VVTPYY---NKPTQEGLYQHFKAIAEEVDLPIILYNVPSRTGVSLYPETVKRLA-EEPNI 154 (285)
T ss_pred EcCCcC---CCCCHHHHHHHHHHHHhcCCCCEEEEECcHHhcCCCCHHHHHHHH-cCCCE
Confidence 875432 2345667777777654 479999887532 2233456777777 47764
No 134
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=93.72 E-value=2 Score=36.69 Aligned_cols=127 Identities=10% Similarity=0.041 Sum_probs=74.3
Q ss_pred ChHHHHHHhHHCCCceEEEeCCCCCccchHHHHHHHHhCCC-cEEEEEEcCCCC----cchHHHHHHHHHhcCCceEEEe
Q 019335 93 HVDFLLQCMEEASVDGALIVQPINHKFDHSLVTSVLKKYPS-KFVGCCLANPAE----DVIGIKQLEQLILKDGFRAVRF 167 (342)
Q Consensus 93 ~~~~ll~~md~~GI~~~v~~~~~~~~~~N~~~~~~~~~~p~-r~~g~~~i~p~~----~~~~~~eler~~~~~g~~Gvk~ 167 (342)
....+++.+-+.||+..++.. +.+..+.+..++ +..-++.+.-.. .++.+++.+++ .+.|+.++.+
T Consensus 14 ~~~~~~~~~~~~gv~gi~~~g--------~~i~~~~~~~~~~~~~v~~~v~~~~~~~~~~~~~~~a~~a-~~~Gad~i~v 84 (201)
T cd00945 14 DIAKLCDEAIEYGFAAVCVNP--------GYVRLAADALAGSDVPVIVVVGFPTGLTTTEVKVAEVEEA-IDLGADEIDV 84 (201)
T ss_pred HHHHHHHHHHHhCCcEEEECH--------HHHHHHHHHhCCCCCeEEEEecCCCCCCcHHHHHHHHHHH-HHcCCCEEEE
Confidence 356777788889998766543 333334445555 654444444332 34467777777 5789999998
Q ss_pred cCCCCCCCCcCC--cHHHHHHHHHHhh---hCCeEEEEeccCCCCCHHHHHHHHH--hCCCCcEEecccCC
Q 019335 168 NPYLWPSGQQMT--NEVGKAMFSKAGE---LGVPVGFMCMKGLNLHISEIEELCT--EFPSTTVLLDHLAF 231 (342)
Q Consensus 168 ~~~~~~~g~~l~--~~~~~~~~~~a~e---~~lpv~iH~~~~~~~~~~~l~~l~~--~~P~lk~vl~H~G~ 231 (342)
.+.. ....+ .+.....++.+.+ .++|+.+....+....++.+..+++ ..+++..|=...|.
T Consensus 85 ~~~~---~~~~~~~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~~~~~~~~~~~~~~~~~g~~~iK~~~~~ 152 (201)
T cd00945 85 VINI---GSLKEGDWEEVLEEIAAVVEAADGGLPLKVILETRGLKTADEIAKAARIAAEAGADFIKTSTGF 152 (201)
T ss_pred eccH---HHHhCCCHHHHHHHHHHHHHHhcCCceEEEEEECCCCCCHHHHHHHHHHHHHhCCCEEEeCCCC
Confidence 7543 12222 4555566655555 4999988765321113444444422 45787777655553
No 135
>KOG4127 consensus Renal dipeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=93.15 E-value=1.1 Score=42.21 Aligned_cols=207 Identities=15% Similarity=0.232 Sum_probs=116.3
Q ss_pred hHHHHHHHHhCCCcEEEEE------------------EcCC-CCcchHHHHHHHHHhcCCceEEEecCCC---CC-----
Q 019335 121 HSLVTSVLKKYPSKFVGCC------------------LANP-AEDVIGIKQLEQLILKDGFRAVRFNPYL---WP----- 173 (342)
Q Consensus 121 N~~~~~~~~~~p~r~~g~~------------------~i~p-~~~~~~~~eler~~~~~g~~Gvk~~~~~---~~----- 173 (342)
-+.+.++++.||+.+..+- .|.- +..+....-|+.+ ..+|++.+.+...+ |.
T Consensus 140 ID~vrRm~~~y~~~~~~vtsa~~~~q~~~~gkiA~LiGVeGgH~i~sSlsVLR~f-Y~LG~RyltLTh~C~tpwA~a~~~ 218 (419)
T KOG4127|consen 140 IDVVRRMCAMYPETFLLVTSADGIEQTHRRGKIASLIGVEGGHSIDTSLSVLRSF-YSLGVRYLTLTHTCDTPWADAAIV 218 (419)
T ss_pred HHHHHHHHHhcccceeeeechhhHHHHHHhccceeeecccccccccccHHHHHHH-HHhhhhheeeeeccCCCchhhhhh
Confidence 3556777888888666221 1111 1122344556555 57899998876332 21
Q ss_pred ---CCCcC---CcHHHHHHHHHHhhhCCeEEE-EeccCCCCCHHHHHHHHHhCCCCcEEecccCCCCCCCCchhhHhHHH
Q 019335 174 ---SGQQM---TNEVGKAMFSKAGELGVPVGF-MCMKGLNLHISEIEELCTEFPSTTVLLDHLAFCKPPSNDEESLAFSN 246 (342)
Q Consensus 174 ---~g~~l---~~~~~~~~~~~a~e~~lpv~i-H~~~~~~~~~~~l~~l~~~~P~lk~vl~H~G~~~p~~~~~~~~~~~~ 246 (342)
.+..- -.+.-+.+...++.+|+-|.+ |+. ...+.+.++ -.+..+|+.|.....-.-..++.. +.
T Consensus 219 ~~~~~~~~~~gLs~FG~~vV~EMNRLGMmVDLShvS------~atm~~aL~-vS~APVIFSHSsA~~vcns~rNVP--Dd 289 (419)
T KOG4127|consen 219 DYHDGENNIGGLSPFGQKVVFEMNRLGMMVDLSHVS------DATMRDALE-VSRAPVIFSHSSAYSVCNSSRNVP--DD 289 (419)
T ss_pred cccCcCcccCCccHHHHHHHHHHhhhhheeehhhcC------HHHHHHHHH-hhcCceEeecccHHHHhcCccCCc--HH
Confidence 11111 135678889999999999965 332 223444443 234558999987521110011111 12
Q ss_pred Hh-cccCCCc-EEEecCcccccccCCCCCCCchhHHHHHHHhcCCCcEEEccCCCCCCCC-------CChHhHHHHHHHH
Q 019335 247 LL-KLSRFPQ-VYVKFSALFRVSRMPFPYQDLSSPLSQVVSSFGANRVMWGSDFPYVVPE-------CGYKGGREAASLI 317 (342)
Q Consensus 247 ~~-~l~~~~N-vy~~~S~~~~~~~~~~~~~~~~~~l~~~i~~~G~dRilfGSD~P~~~~~-------~~~~~~~~~~~~~ 317 (342)
++ .+++.+. |.+.+..-+-.....-...+....+.++.+..|.|.|=+|.||-..... ..|+ +.+.++
T Consensus 290 VL~llk~NgGvVMVnfy~~~isc~~~A~v~~v~~Hi~hIr~VaG~~hIGlGg~yDGi~~~PkGLEDVSkYP---~LiaeL 366 (419)
T KOG4127|consen 290 VLQLLKENGGVVMVNFYPGFISCSDRATVSDVADHINHIRAVAGIDHIGLGGDYDGIPRVPKGLEDVSKYP---DLIAEL 366 (419)
T ss_pred HHHHHhhcCCEEEEEeecccccCCCcccHHHHHHHHHHHHHhhccceeeccCCcCCcCCCCcchhhhhhhH---HHHHHH
Confidence 33 3444333 4444332111111111234455677888888899999999998655432 2454 445566
Q ss_pred HhcCCCCHHHHHHHHhHHHHHhcC
Q 019335 318 ANEVPLSPSELEWIMGGTIMQLFQ 341 (342)
Q Consensus 318 ~~~~~l~~~~~~~I~~~NA~rl~~ 341 (342)
++ .+.+++|..+++++|..|+|+
T Consensus 367 l~-r~~~~~E~~~l~g~N~LRV~~ 389 (419)
T KOG4127|consen 367 LE-RGWWEEELIGLAGGNLLRVFR 389 (419)
T ss_pred Hh-cCCcHHHHHHHhcchHHHHHH
Confidence 64 678888888899999999985
No 136
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=93.12 E-value=4.8 Score=36.13 Aligned_cols=134 Identities=11% Similarity=0.012 Sum_probs=80.9
Q ss_pred CChHHHHHHhHHCCCceEEEeCCCCCccchHHHHHHHHhCCCcEEEEEE-------------cCCCCcchHHHHHHH---
Q 019335 92 GHVDFLLQCMEEASVDGALIVQPINHKFDHSLVTSVLKKYPSKFVGCCL-------------ANPAEDVIGIKQLEQ--- 155 (342)
Q Consensus 92 ~~~~~ll~~md~~GI~~~v~~~~~~~~~~N~~~~~~~~~~p~r~~g~~~-------------i~p~~~~~~~~eler--- 155 (342)
.+.++.++.+.+.|.++.=+..+ +...-+.+.++++++.=++.++.. ++|...++..+.+++
T Consensus 14 ~~l~e~~~~~~e~G~~~vEl~~~--~~~~~~~l~~~l~~~gl~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 91 (254)
T TIGR03234 14 LPFLERFAAAAQAGFTGVEYLFP--YDWDAEALKARLAAAGLEQVLFNLPAGDWAAGERGIACLPGREEEFREGVALAIA 91 (254)
T ss_pred CCHHHHHHHHHHcCCCEEEecCC--ccCCHHHHHHHHHHcCCeEEEEeCCCCccccCCCccccCCccHHHHHHHHHHHHH
Confidence 47889999999999998866432 223345677777777534444421 112211222344554
Q ss_pred HHhcCCceEEEecCCCCCCCCcCC------cHHHHHHHHHHhhhCCeEEEEeccCC------CCCHHHHHHHHHhC--CC
Q 019335 156 LILKDGFRAVRFNPYLWPSGQQMT------NEVGKAMFSKAGELGVPVGFMCMKGL------NLHISEIEELCTEF--PS 221 (342)
Q Consensus 156 ~~~~~g~~Gvk~~~~~~~~g~~l~------~~~~~~~~~~a~e~~lpv~iH~~~~~------~~~~~~l~~l~~~~--P~ 221 (342)
.+++.|...|.+.....+...... -+.+..+.+.|++.|+.+.++..... -..+.++.+++++. |+
T Consensus 92 ~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~A~~~gi~l~lE~~~~~~~~~~~l~t~~~~~~li~~v~~~~ 171 (254)
T TIGR03234 92 YARALGCPQVNCLAGKRPAGVSPEEARATLVENLRYAADALDRIGLTLLIEPINSFDMPGFFLTTTEQALAVIDDVGREN 171 (254)
T ss_pred HHHHhCCCEEEECcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEECCcccCCCChhcCHHHHHHHHHHhCCCC
Confidence 345788888877643211111111 13467788889999999999874211 12456777888765 78
Q ss_pred CcEEec
Q 019335 222 TTVLLD 227 (342)
Q Consensus 222 lk~vl~ 227 (342)
+++.++
T Consensus 172 ~~i~~D 177 (254)
T TIGR03234 172 LKLQYD 177 (254)
T ss_pred EeEeee
Confidence 887765
No 137
>TIGR00221 nagA N-acetylglucosamine-6-phosphate deacetylase.
Probab=93.11 E-value=8.7 Score=37.02 Aligned_cols=243 Identities=11% Similarity=0.064 Sum_probs=128.7
Q ss_pred CeeeeeeeccCCCCccCCCCCCCCCCCCCCCCChHHHHHHhHHCCCceEEEeCCCCCccchHHHHHHHH----hCCC-cE
Q 019335 61 KIIDSHLHVWASPEEAADKFPYFPGQEPTLPGHVDFLLQCMEEASVDGALIVQPINHKFDHSLVTSVLK----KYPS-KF 135 (342)
Q Consensus 61 ~iID~H~Hl~~~~~~~~~~~p~~~~~~~~~~~~~~~ll~~md~~GI~~~v~~~~~~~~~~N~~~~~~~~----~~p~-r~ 135 (342)
-.||+|+|... ++.... . ...+.+...+.+-+.||+..+-.............++..+ +.++ .+
T Consensus 57 GfID~HvHg~~-------g~~~~~---~-~~e~~~~~~~~~~~~GvTt~l~t~~t~~~~~~~~~l~~~~~~~~~~~~a~~ 125 (380)
T TIGR00221 57 GFIDIHIHGCG-------GVDTND---A-SFETLEIMSERLPKSGCTSFLPTLITQPDENIKQAVKNMREYLAKEKNAQA 125 (380)
T ss_pred ceeeeeecccc-------CcCCCC---C-CHHHHHHHHHHHHhcCeeEEeeeccCCCHHHHHHHHHHHHHHHhccCCcee
Confidence 58999999853 111110 0 0123344455666789988775432211112222222222 2222 46
Q ss_pred EEEE----EcCCCC----cc-----hHHHHHHHHHhcC-C-ceEEEecCCCCCCCCcCCcHHHHHHHHHHhhhCCeEEE-
Q 019335 136 VGCC----LANPAE----DV-----IGIKQLEQLILKD-G-FRAVRFNPYLWPSGQQMTNEVGKAMFSKAGELGVPVGF- 199 (342)
Q Consensus 136 ~g~~----~i~p~~----~~-----~~~~eler~~~~~-g-~~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~i- 199 (342)
.|+- .++|.. +. -..++++++.+.. | ++-|.+.|.. +.-.++.+.|.++|+.|.+
T Consensus 126 lG~HlEGPfi~~~~~Gah~~~~i~~p~~~~~~~~~~~~~~~i~~vTlAPE~---------~~~~~~i~~l~~~gi~vs~G 196 (380)
T TIGR00221 126 LGLHLEGPFLSPEKKGAHPPEYIREPDVELFKKFLCEAGGVITKVTLAPEE---------DQHFELIRHLKDAGIIVSAG 196 (380)
T ss_pred eeEeeecCcCChhhcCCCCHHHhhCcCHHHHHHHHHhcCCCEEEEEECCCC---------CChHHHHHHHHHCCeEEEee
Confidence 6663 244421 11 1346777776532 2 3444444432 1225889999999999964
Q ss_pred EeccCCCCCHHHHHHHHHhCCCCcEEecccCCCCCCCCchhhHhHHHHhcccCCCcEEEecCcccccccCCCCCCCchhH
Q 019335 200 MCMKGLNLHISEIEELCTEFPSTTVLLDHLAFCKPPSNDEESLAFSNLLKLSRFPQVYVKFSALFRVSRMPFPYQDLSSP 279 (342)
Q Consensus 200 H~~~~~~~~~~~l~~l~~~~P~lk~vl~H~G~~~p~~~~~~~~~~~~~~~l~~~~Nvy~~~S~~~~~~~~~~~~~~~~~~ 279 (342)
|+. ...+++...++. +.+ .+.|++.+.+.+.-+. ... +-.....+++|+++=.-. ..-....
T Consensus 197 Hs~----A~~~~~~~a~~~--Ga~-~~THlfNaM~~~~hR~-pg~--vga~l~~~~~~~elI~Dg--------~Hv~p~~ 258 (380)
T TIGR00221 197 HTN----ATYELAKAAFKA--GAT-HATHLYNAMSPIHHRE-PGV--IGAVLDHDDVYTEIIADG--------IHIHPLN 258 (380)
T ss_pred CCC----CCHHHHHHHHHc--CCC-eeeeeccCCCCcCCCC-CcH--HHHHhcCCCcEEEEEcCC--------CcCCHHH
Confidence 322 234555555443 555 5679988766543211 110 111223356887753210 0111257
Q ss_pred HHHHHHhcCCCcEEEccCC--CCCCCCCCh-------------------------HhHHHHHHHHHhcCCCCHHHHHHHH
Q 019335 280 LSQVVSSFGANRVMWGSDF--PYVVPECGY-------------------------KGGREAASLIANEVPLSPSELEWIM 332 (342)
Q Consensus 280 l~~~i~~~G~dRilfGSD~--P~~~~~~~~-------------------------~~~~~~~~~~~~~~~l~~~~~~~I~ 332 (342)
++-+.+.-|++|++.=||. +-..+.+.| -...+.++.+.+..+++.++.-+..
T Consensus 259 ~~~~~r~kg~~~~~lvtDa~~~~g~~~G~y~l~~~~v~~~~g~~~~~~g~LAGs~ltl~~~v~~l~~~~~~~~~eal~~a 338 (380)
T TIGR00221 259 IRLAKKLKGDSKLCLVTDSMAAAGAKDGVFIFGGKTVYIREGTCLDSNGTLAGSSLTMIEGARNLVEFTNISLTDAARMS 338 (380)
T ss_pred HHHHHHhcCCCcEEEEeccccccCCCCceEeECCEEEEEECCEEEcCCCceechhhhHHHHHHHHHHhhCCCHHHHHHHH
Confidence 8888888899999999993 111111111 1123344444444578999999999
Q ss_pred hHHHHHhcC
Q 019335 333 GGTIMQLFQ 341 (342)
Q Consensus 333 ~~NA~rl~~ 341 (342)
..|..++++
T Consensus 339 T~npA~~lg 347 (380)
T TIGR00221 339 SLNPARALG 347 (380)
T ss_pred hHHHHHHhC
Confidence 999999885
No 138
>PRK15108 biotin synthase; Provisional
Probab=92.70 E-value=9.3 Score=36.29 Aligned_cols=225 Identities=16% Similarity=0.184 Sum_probs=111.9
Q ss_pred CChHHHHHHh---HHCCCceEEEeCCC--CCccchHHHHHHHHhCCCc-EEEEEEcCCCCcchHHHHHHHHHhcCCceEE
Q 019335 92 GHVDFLLQCM---EEASVDGALIVQPI--NHKFDHSLVTSVLKKYPSK-FVGCCLANPAEDVIGIKQLEQLILKDGFRAV 165 (342)
Q Consensus 92 ~~~~~ll~~m---d~~GI~~~v~~~~~--~~~~~N~~~~~~~~~~p~r-~~g~~~i~p~~~~~~~~eler~~~~~g~~Gv 165 (342)
-+.|++++.. .+.|+++..+.... .....-+++.++++.-... +.-++.+-.. ..++++++ ++.|+.++
T Consensus 76 ls~eEI~~~a~~~~~~G~~~i~i~~~g~~p~~~~~e~i~~~i~~ik~~~i~v~~s~G~l----s~e~l~~L-keAGld~~ 150 (345)
T PRK15108 76 MEVEQVLESARKAKAAGSTRFCMGAAWKNPHERDMPYLEQMVQGVKAMGLETCMTLGTL----SESQAQRL-ANAGLDYY 150 (345)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEecCCCCCcchHHHHHHHHHHHHhCCCEEEEeCCcC----CHHHHHHH-HHcCCCEE
Confidence 4667777654 47899987664321 1122345665555421111 2212222222 23566666 67788877
Q ss_pred EecCCCCCCC-CcC----CcHHHHHHHHHHhhhCCeEEEEeccCCCCCHHHHHHH---HHhCCC------CcEEecccCC
Q 019335 166 RFNPYLWPSG-QQM----TNEVGKAMFSKAGELGVPVGFMCMKGLNLHISEIEEL---CTEFPS------TTVLLDHLAF 231 (342)
Q Consensus 166 k~~~~~~~~g-~~l----~~~~~~~~~~~a~e~~lpv~iH~~~~~~~~~~~l~~l---~~~~P~------lk~vl~H~G~ 231 (342)
.+.....+.. ..+ +-..+....+.+.+.|+.+..|.--|......+..+. +++.++ +.+...+-|.
T Consensus 151 n~~leT~p~~f~~I~~~~~~~~rl~~i~~a~~~G~~v~sg~i~GlgEt~ed~v~~~~~l~~l~~~~~~ip~~~~~P~~gT 230 (345)
T PRK15108 151 NHNLDTSPEFYGNIITTRTYQERLDTLEKVRDAGIKVCSGGIVGLGETVKDRAGLLLQLANLPTPPESVPINMLVKVKGT 230 (345)
T ss_pred eeccccChHhcCCCCCCCCHHHHHHHHHHHHHcCCceeeEEEEeCCCCHHHHHHHHHHHHhccCCCCEEEeCCccCCCCC
Confidence 6543321111 112 2235567777888889999888655544444443333 333321 1222233344
Q ss_pred CCCCCCc-hhhHhHHHHhcccC--CCcEEEecCcccccccCCCCCCCchhHHHHHHHhcCCCcEEEccCCCCCCCCCChH
Q 019335 232 CKPPSND-EESLAFSNLLKLSR--FPQVYVKFSALFRVSRMPFPYQDLSSPLSQVVSSFGANRVMWGSDFPYVVPECGYK 308 (342)
Q Consensus 232 ~~p~~~~-~~~~~~~~~~~l~~--~~Nvy~~~S~~~~~~~~~~~~~~~~~~l~~~i~~~G~dRilfGSD~P~~~~~~~~~ 308 (342)
+...... .....+ +++.+++ .||..+.+++.... ..+....+.=.+|++-+|.| ||=......+..
T Consensus 231 pl~~~~~~~~~e~l-r~iAi~Rl~lp~~~i~i~~g~~~---------~~~~~~~~~l~~Gan~~~~g-~~~ltt~g~~~~ 299 (345)
T PRK15108 231 PLADNDDVDAFDFI-RTIAVARIMMPTSYVRLSAGREQ---------MNEQTQAMCFMAGANSIFYG-CKLLTTPNPEED 299 (345)
T ss_pred CCCCCCCCCHHHHH-HHHHHHHHHCCCceeeecccHhH---------hChhhHHHHHHcCCcEEEEC-CccccCCCCCHH
Confidence 2211000 011111 2222333 68888888875321 11223444446699999887 542232222333
Q ss_pred hHHHHHHHHHhcCCCCHHHHHHHHhHHH
Q 019335 309 GGREAASLIANEVPLSPSELEWIMGGTI 336 (342)
Q Consensus 309 ~~~~~~~~~~~~~~l~~~~~~~I~~~NA 336 (342)
+.+ ++++.+|+...+++..+++|.
T Consensus 300 ~~~----~~i~~~g~~~~~~~~~~~~~~ 323 (345)
T PRK15108 300 KDL----QLFRKLGLNPQQTAVLAGDNE 323 (345)
T ss_pred HHH----HHHHHcCCCcccccccccchh
Confidence 333 344467898888887777664
No 139
>cd01313 Met_dep_hydrolase_E Metallo-dependent hydrolases, subgroup D is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=92.70 E-value=10 Score=36.86 Aligned_cols=51 Identities=20% Similarity=0.176 Sum_probs=35.6
Q ss_pred cCCcHHHHHHHHHHhhhCCeEEEEeccCCCCCHHHHHH-----------HHHhCC--CCcEEecccCCC
Q 019335 177 QMTNEVGKAMFSKAGELGVPVGFMCMKGLNLHISEIEE-----------LCTEFP--STTVLLDHLAFC 232 (342)
Q Consensus 177 ~l~~~~~~~~~~~a~e~~lpv~iH~~~~~~~~~~~l~~-----------l~~~~P--~lk~vl~H~G~~ 232 (342)
....+.++.+++.|.+ |++|.+|+.++ ..++.. .+.++. +-++++.|+...
T Consensus 203 ~~s~e~l~~~~~~a~~-g~~i~~H~~e~----~~e~~~~~~~~g~~~i~~l~~~g~l~~~~~~~H~~~l 266 (418)
T cd01313 203 AVPAEQLAALAALASE-KAPVHIHLAEQ----PKEVDDCLAAHGRRPVELLLDHGHLDARWCLVHATHL 266 (418)
T ss_pred CCCHHHHHHHHHHHhc-CCceEEEeCCC----HHHHHHHHHHcCCCHHHHHHHcCCCCCCEEEEeCCCC
Confidence 4667899999999999 99999999753 122222 222222 456899999874
No 140
>COG1574 Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only]
Probab=92.69 E-value=1.1 Score=45.18 Aligned_cols=152 Identities=18% Similarity=0.197 Sum_probs=81.9
Q ss_pred CCcHHHHHHHHHHhhhCCeEEEEec-cC-CCCCHHHHHHHHHhCC--CCcEEecccCCCCCCCCchhhHhHHHHhcc---
Q 019335 178 MTNEVGKAMFSKAGELGVPVGFMCM-KG-LNLHISEIEELCTEFP--STTVLLDHLAFCKPPSNDEESLAFSNLLKL--- 250 (342)
Q Consensus 178 l~~~~~~~~~~~a~e~~lpv~iH~~-~~-~~~~~~~l~~l~~~~P--~lk~vl~H~G~~~p~~~~~~~~~~~~~~~l--- 250 (342)
++.+.+.++.+.|.++|++|.+|+- ++ ...-+..++...++.| +++--+.|...-.| . ..+++.+|
T Consensus 318 ~~~e~l~~~v~~a~~~gl~v~vHAiGD~Av~~~LdafE~~~~~~~~~~~r~rieH~~~v~~----~---~i~R~~~Lgv~ 390 (535)
T COG1574 318 LTEEELEELVRAADERGLPVAVHAIGDGAVDAALDAFEKARKKNGLKGLRHRIEHAELVSP----D---QIERFAKLGVI 390 (535)
T ss_pred cCHHHHHHHHHHHHHCCCcEEEEEechHHHHHHHHHHHHHhhhcCCccCCceeeeeeecCH----h---HHHHHHhcCce
Confidence 4567899999999999999999974 21 0011334555666665 78888999987543 1 22333332
Q ss_pred -cCCCcEEEecCcccccccCCCCCCCchhHHHHHHHhcCCCcEEEccCCCCCCCCCChHhHHHHHHHHH-h------cCC
Q 019335 251 -SRFPQVYVKFSALFRVSRMPFPYQDLSSPLSQVVSSFGANRVMWGSDFPYVVPECGYKGGREAASLIA-N------EVP 322 (342)
Q Consensus 251 -~~~~Nvy~~~S~~~~~~~~~~~~~~~~~~l~~~i~~~G~dRilfGSD~P~~~~~~~~~~~~~~~~~~~-~------~~~ 322 (342)
+-.||.++.-..++.. +.+........-++.+++. | =.+-+|||+|....+ .+.....++..-. . ...
T Consensus 391 ~svQP~f~~~~~~~~~~-rlG~~r~~~~~p~~~ll~~-G-~~la~gSD~Pv~~~d-P~~~i~~AVtr~~~~g~~~~~~~~ 466 (535)
T COG1574 391 ASVQPNFLFSDGEWYVD-RLGEERASRSYPFRSLLKA-G-VPLAGGSDAPVEPYD-PWLGIYAAVTRKTPGGRVLGPEER 466 (535)
T ss_pred EeeccccccccchHHHH-hhhhhhhhccCcHHHHHHC-C-CeEeccCCCCCCCCC-hHHHHHHHHcCCCCCCCCCccccc
Confidence 2355555432122111 0000000011235566655 3 367899999996543 3332222221000 0 014
Q ss_pred CCHHHHHHHHhHHHHHhc
Q 019335 323 LSPSELEWIMGGTIMQLF 340 (342)
Q Consensus 323 l~~~~~~~I~~~NA~rl~ 340 (342)
|+.++.=+++-.|+....
T Consensus 467 L~~~eAL~~yT~~~A~a~ 484 (535)
T COG1574 467 LTREEALRAYTEGGAYAS 484 (535)
T ss_pred cCHHHHHHHHhhhhHHhh
Confidence 777777777777766543
No 141
>PRK00912 ribonuclease P protein component 3; Provisional
Probab=92.60 E-value=7.3 Score=34.78 Aligned_cols=210 Identities=13% Similarity=0.040 Sum_probs=104.0
Q ss_pred CCeeeeeeeccCCCCccCCCCCCCCCCCCCCCCChHHHHHHhHHCCCceEEEeCCCCCccchHHHHHHHHhCCCcEEEEE
Q 019335 60 VKIIDSHLHVWASPEEAADKFPYFPGQEPTLPGHVDFLLQCMEEASVDGALIVQPINHKFDHSLVTSVLKKYPSKFVGCC 139 (342)
Q Consensus 60 ~~iID~H~Hl~~~~~~~~~~~p~~~~~~~~~~~~~~~ll~~md~~GI~~~v~~~~~~~~~~N~~~~~~~~~~p~r~~g~~ 139 (342)
|+.+|.|+|-. ++ + ..+++++++...+.|++..++..-... .|+
T Consensus 1 ~m~~DlHvHt~-~d-----~-----------~~~~~e~i~~A~~~Gl~~i~itdH~~~-------------~~~------ 44 (237)
T PRK00912 1 MKFYDLNVHAV-PD-----G-----------YDTVLRLISEASHLGYSGIALSNHSDK-------------YPE------ 44 (237)
T ss_pred CCceEeccCCC-CC-----C-----------cchHHHHHHHHHHCCCCEEEEecCccc-------------ccc------
Confidence 57899999974 21 1 357899999999999999988642111 010
Q ss_pred EcCCCCcchHHHHHHHHHhcCCceEEEecCCCCCCCCcCCcHHHHHHHHHHhh-hCCeEEEEeccCCCCCHHHHHHHHHh
Q 019335 140 LANPAEDVIGIKQLEQLILKDGFRAVRFNPYLWPSGQQMTNEVGKAMFSKAGE-LGVPVGFMCMKGLNLHISEIEELCTE 218 (342)
Q Consensus 140 ~i~p~~~~~~~~eler~~~~~g~~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e-~~lpv~iH~~~~~~~~~~~l~~l~~~ 218 (342)
... ..++++ .-.=+.|+.+... +...+..+.+...+ +++. .+|.+. ..+...+-.
T Consensus 45 -----~~~-~~~~~~---~i~Il~GiEi~~~--------~~~~~~~~~~~~~~~~d~v-~v~~~~------~~~~~~a~~ 100 (237)
T PRK00912 45 -----SKP-ELEDLL---GFEIFRGVEIVAS--------NPSKLRGLVGKFRKKVDVL-AVHGGD------EKVNRAACE 100 (237)
T ss_pred -----hhH-HHHHhc---CCcEEeeEEEecC--------CHHHHHHHHHhccCcccEE-EEeCCC------HHHHHHHHc
Confidence 000 001111 0001234433211 11233334433222 3343 356321 233223444
Q ss_pred CCCCcEEecccCCCCCCCCchhhHhHHHHhcccCCCcEEEecCcccccccCCCC-CCCc--hhHHHHHHHhcCCCcEEEc
Q 019335 219 FPSTTVLLDHLAFCKPPSNDEESLAFSNLLKLSRFPQVYVKFSALFRVSRMPFP-YQDL--SSPLSQVVSSFGANRVMWG 295 (342)
Q Consensus 219 ~P~lk~vl~H~G~~~p~~~~~~~~~~~~~~~l~~~~Nvy~~~S~~~~~~~~~~~-~~~~--~~~l~~~i~~~G~dRilfG 295 (342)
.+++. |++|.+...... + ....+.+.+...++.+++............ .... ...+-.+.+.+| =.++.|
T Consensus 101 ~~~vd-Ii~hp~~~~~~~-~----~~~~~~~~a~~~gv~lEIn~s~~~~~~~~~r~~~~~~~~~~~~~~~~~g-~piiis 173 (237)
T PRK00912 101 NPRVD-ILSHPYTKRKDS-G----INHVLAKEAARNNVAIEFNLRDILKSRGGRRARTLSNFRDNLALARKYD-FPLVLT 173 (237)
T ss_pred cCCCc-EEeCccccCCCC-C----cCHHHHHHHHHCCeEEEEEchHhhhhcccHHHHHHHHHHHHHHHHHhcC-CCEEEe
Confidence 55564 666876522110 0 012344555555788887654211110000 0000 012334445555 358999
Q ss_pred cCCCCCCCCCChHhHHHHHHHHHhcCCCCHHHHHHHHhHHHHHhc
Q 019335 296 SDFPYVVPECGYKGGREAASLIANEVPLSPSELEWIMGGTIMQLF 340 (342)
Q Consensus 296 SD~P~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~I~~~NA~rl~ 340 (342)
||.-....-..+.... .+++..++++++..+.+..|+++++
T Consensus 174 SdAh~~~~l~~~~~~~----~l~~~~Gl~~~~~~~~~~~~~~~i~ 214 (237)
T PRK00912 174 SGAMSCYDLRSPREMI----ALAELFGMEEDEALKALSYYPESII 214 (237)
T ss_pred CCCCcccccCCHHHHH----HHHHHcCCCHHHHHHHHHHhHHHHH
Confidence 9964433223343333 3334679999999999999988876
No 142
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=92.46 E-value=3.9 Score=38.06 Aligned_cols=126 Identities=15% Similarity=0.157 Sum_probs=76.4
Q ss_pred ChHHHHHHhHHCCCceEEEeCCCC-----CccchHHHHHHHHhC-CCcEEEEEEcCCCCcchHHHHHHHHHhcCCceEEE
Q 019335 93 HVDFLLQCMEEASVDGALIVQPIN-----HKFDHSLVTSVLKKY-PSKFVGCCLANPAEDVIGIKQLEQLILKDGFRAVR 166 (342)
Q Consensus 93 ~~~~ll~~md~~GI~~~v~~~~~~-----~~~~N~~~~~~~~~~-p~r~~g~~~i~p~~~~~~~~eler~~~~~g~~Gvk 166 (342)
....+++...+.||++.++....- ...+...+++.+.+. .+|+--++.+.-...+++++..+.+ ++.|+.|+-
T Consensus 26 a~~~lv~~li~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g~~~t~eai~lak~a-~~~Gad~il 104 (299)
T COG0329 26 ALRRLVEFLIAAGVDGLVVLGTTGESPTLTLEERKEVLEAVVEAVGGRVPVIAGVGSNSTAEAIELAKHA-EKLGADGIL 104 (299)
T ss_pred HHHHHHHHHHHcCCCEEEECCCCccchhcCHHHHHHHHHHHHHHHCCCCcEEEecCCCcHHHHHHHHHHH-HhcCCCEEE
Confidence 346677888899999999876421 122344555555543 3454344444444444566555444 899999998
Q ss_pred ecCCCCCCCCcCCcHHHH-HHHHHHhhhCCeEEEEecc---CCCCCHHHHHHHHHhCCCCc
Q 019335 167 FNPYLWPSGQQMTNEVGK-AMFSKAGELGVPVGFMCMK---GLNLHISEIEELCTEFPSTT 223 (342)
Q Consensus 167 ~~~~~~~~g~~l~~~~~~-~~~~~a~e~~lpv~iH~~~---~~~~~~~~l~~l~~~~P~lk 223 (342)
..+.++ ...+.+.+. -+-+.+++.++|+.+--.. +..-.++.+.++++ +|++.
T Consensus 105 ~v~PyY---~k~~~~gl~~hf~~ia~a~~lPvilYN~P~~tg~~l~~e~i~~la~-~~niv 161 (299)
T COG0329 105 VVPPYY---NKPSQEGLYAHFKAIAEAVDLPVILYNIPSRTGVDLSPETIARLAE-HPNIV 161 (299)
T ss_pred EeCCCC---cCCChHHHHHHHHHHHHhcCCCEEEEeCccccCCCCCHHHHHHHhc-CCCEE
Confidence 775543 233344444 4444566689999887542 22234677788887 88763
No 143
>PRK07328 histidinol-phosphatase; Provisional
Probab=92.21 E-value=8.9 Score=34.92 Aligned_cols=39 Identities=15% Similarity=0.169 Sum_probs=29.9
Q ss_pred CCeeeeeeeccCCCCccCCCCCCCCCCCCCCCCChHHHHHHhHHCCCceEEEeC
Q 019335 60 VKIIDSHLHVWASPEEAADKFPYFPGQEPTLPGHVDFLLQCMEEASVDGALIVQ 113 (342)
Q Consensus 60 ~~iID~H~Hl~~~~~~~~~~~p~~~~~~~~~~~~~~~ll~~md~~GI~~~v~~~ 113 (342)
||++|.|+|-..... -.++++++++...+.|++...+..
T Consensus 1 ~m~~D~H~HT~~s~~---------------~~~~~ee~v~~A~~~Gl~~i~~Td 39 (269)
T PRK07328 1 KMLVDYHMHTPLCGH---------------AVGTPEEYVQAARRAGLKEIGFTD 39 (269)
T ss_pred CCceeeccCCCCCCC---------------CCCCHHHHHHHHHHCCCCEEEEec
Confidence 567999999753210 135799999999999999988774
No 144
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=92.19 E-value=5.6 Score=36.79 Aligned_cols=125 Identities=10% Similarity=0.117 Sum_probs=73.0
Q ss_pred hHHHHHHhHHCC-CceEEEeCCCC-----CccchHHHHH-HHHhCCCcEEEEEEcCCCCcchHHHHHHHHHhcCCceEEE
Q 019335 94 VDFLLQCMEEAS-VDGALIVQPIN-----HKFDHSLVTS-VLKKYPSKFVGCCLANPAEDVIGIKQLEQLILKDGFRAVR 166 (342)
Q Consensus 94 ~~~ll~~md~~G-I~~~v~~~~~~-----~~~~N~~~~~-~~~~~p~r~~g~~~i~p~~~~~~~~eler~~~~~g~~Gvk 166 (342)
...+++.+-+.| |++.++..... ...+-..+++ .++.-.+|+--++.+--...+++++..+.. ++.|+.||-
T Consensus 23 ~~~~i~~~i~~G~v~gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~la~~a-~~~Gad~v~ 101 (290)
T TIGR00683 23 LRQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKDQIALIAQVGSVNLKEAVELGKYA-TELGYDCLS 101 (290)
T ss_pred HHHHHHHHHhCCCcCEEEECCcccccccCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHH-HHhCCCEEE
Confidence 456677777889 99988775421 1122233444 333344565444444333334465555554 789999998
Q ss_pred ecCCCCCCCCcCCcHHHHHHHHHH-hhh-CCeEEEEecc---CCCCCHHHHHHHHHhCCCCc
Q 019335 167 FNPYLWPSGQQMTNEVGKAMFSKA-GEL-GVPVGFMCMK---GLNLHISEIEELCTEFPSTT 223 (342)
Q Consensus 167 ~~~~~~~~g~~l~~~~~~~~~~~a-~e~-~lpv~iH~~~---~~~~~~~~l~~l~~~~P~lk 223 (342)
+.+.++ ...+++.....|+.. ++. ++||.+.-.. +..-.++.+.+++ ++|++.
T Consensus 102 v~~P~y---~~~~~~~i~~yf~~v~~~~~~lpv~lYn~P~~tg~~l~~~~i~~L~-~~pnv~ 159 (290)
T TIGR00683 102 AVTPFY---YKFSFPEIKHYYDTIIAETGGLNMIVYSIPFLTGVNMGIEQFGELY-KNPKVL 159 (290)
T ss_pred EeCCcC---CCCCHHHHHHHHHHHHhhCCCCCEEEEeCccccccCcCHHHHHHHh-cCCCEE
Confidence 765432 334567777777776 455 7999876432 2223456677777 578754
No 145
>cd01305 archeal_chlorohydrolases Predicted chlorohydrolases. These metallo-dependent hydrolases from archea are part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. They have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. Some members of this subgroup are predicted to be chlorohyrolases.
Probab=92.18 E-value=8.6 Score=34.69 Aligned_cols=166 Identities=17% Similarity=0.145 Sum_probs=83.6
Q ss_pred HHHhHHCCCceEEEeCCCCCccchHHHHHHHHhCCCcEEEEEEcCCCCcchHHHHHHHHHhcCCceEEEecCCCCCCCCc
Q 019335 98 LQCMEEASVDGALIVQPINHKFDHSLVTSVLKKYPSKFVGCCLANPAEDVIGIKQLEQLILKDGFRAVRFNPYLWPSGQQ 177 (342)
Q Consensus 98 l~~md~~GI~~~v~~~~~~~~~~N~~~~~~~~~~p~r~~g~~~i~p~~~~~~~~eler~~~~~g~~Gvk~~~~~~~~g~~ 177 (342)
+.+|-+.|++..+-+... ....-+.+.+..++...|..++... |...+ ..+++.+ +..++..+.. ..
T Consensus 58 ~~e~l~~GtTt~~d~~~~-~~~~~~a~~~a~~~~g~r~~~~~~~-~~~~~-~~~~~~~-----~~~~~~~~~~-----~~ 124 (263)
T cd01305 58 LRDMRETGIGAFADFREG-GVEGIELLRRALGKLPVPFEVILGR-PTEPD-DPEILLE-----VADGLGLSSA-----ND 124 (263)
T ss_pred HHHHHhcCCeEEEEccCc-chhHHHHHHHHHHhcCCCceEEecc-CCcch-HHHHHHh-----hcccccCCCC-----Cc
Confidence 336778899876655321 1112356677777777776444433 22221 2222221 1222222211 11
Q ss_pred CCcHHHHHHHHHHhhhCCeEEEEeccCCC-CCHHHHHHHHHhCCCCcEEecccCCCCCCCCchhhHhHHHHhcccCCCcE
Q 019335 178 MTNEVGKAMFSKAGELGVPVGFMCMKGLN-LHISEIEELCTEFPSTTVLLDHLAFCKPPSNDEESLAFSNLLKLSRFPQV 256 (342)
Q Consensus 178 l~~~~~~~~~~~a~e~~lpv~iH~~~~~~-~~~~~l~~l~~~~P~lk~vl~H~G~~~p~~~~~~~~~~~~~~~l~~~~Nv 256 (342)
.+ ++.+++.|.++|++|.+|+.+... .....+..+.+..|+ + +.|+.... ++ . +..+++. ++
T Consensus 125 ~~---l~~~~~~A~~~g~~v~~H~~e~~~~~g~~~i~~~~~~~~~--~-i~H~~~l~----~~---~---~~~la~~-g~ 187 (263)
T cd01305 125 VD---LEDILELLRRRGKLFAIHASETRESVGMTDIERALDLEPD--L-LVHGTHLT----DE---D---LELVREN-GV 187 (263)
T ss_pred cC---HHHHHHHHHHCCCeeEEecCCCCCCCCchhHHHHHhCCCC--E-EEEcCCCC----HH---H---HHHHHHc-CC
Confidence 12 999999999999999999975421 112234444444443 3 57998632 11 1 2223332 34
Q ss_pred EEecCccccc-ccCCCCCCCchhHHHHHHHhcCCCcEEEccCCCCC
Q 019335 257 YVKFSALFRV-SRMPFPYQDLSSPLSQVVSSFGANRVMWGSDFPYV 301 (342)
Q Consensus 257 y~~~S~~~~~-~~~~~~~~~~~~~l~~~i~~~G~dRilfGSD~P~~ 301 (342)
.+-.+..... ...+ . .-++++++. | =++-+|||.+..
T Consensus 188 ~v~~~P~sn~~l~~g-----~-~p~~~l~~~-G-v~v~lGtD~~~~ 225 (263)
T cd01305 188 PVVLCPRSNLYFGVG-----I-PPVAELLKL-G-IKVLLGTDNVMV 225 (263)
T ss_pred cEEEChhhHHHhCCC-----C-CCHHHHHHC-C-CcEEEECCCCcc
Confidence 4333321100 0111 1 125666665 5 588899998653
No 146
>PF02614 UxaC: Glucuronate isomerase; InterPro: IPR003766 Uronate isomerase (also known as glucuronate isomerase) catalyses the reaction D-glucuronate to D-fructuronate and also converts D-galacturonate to D-tagaturonate [].; GO: 0008880 glucuronate isomerase activity, 0006064 glucuronate catabolic process; PDB: 2QEE_B 3HKA_A 3HK8_A 2PNK_H 2Q6E_A 3HK7_A 3HK5_B 3HK9_A 2Q08_L 1J5S_B ....
Probab=91.12 E-value=1.5 Score=43.18 Aligned_cols=141 Identities=13% Similarity=0.025 Sum_probs=75.4
Q ss_pred HHHHHHHHHhhhCCeEEEEeccC---C--------C----------CCHHHHHHHHHhCCCC----cEEecccCCCCCCC
Q 019335 182 VGKAMFSKAGELGVPVGFMCMKG---L--------N----------LHISEIEELCTEFPST----TVLLDHLAFCKPPS 236 (342)
Q Consensus 182 ~~~~~~~~a~e~~lpv~iH~~~~---~--------~----------~~~~~l~~l~~~~P~l----k~vl~H~G~~~p~~ 236 (342)
.+..+.+.+.|+|+++.+|.|.- . + .....+..++.++|+. |+|+-.+--.
T Consensus 277 ll~~l~~~~~e~g~vmQlHiGa~Rn~n~~~~~~lG~D~G~D~~~~~~~~~~L~~ll~~~~~~~~lpk~ily~Ln~~---- 352 (462)
T PF02614_consen 277 LLWELAKMYAERGWVMQLHIGALRNNNSRMFPRLGPDTGFDSIGDFPDAEALSRLLDRFDNNGKLPKTILYSLNPT---- 352 (462)
T ss_dssp HHHHHHHHHHHHT-EEEEEE-EETTSSHHHHHHTGSSSSG-EE-S--HHHHHHHHHHHHTTTTT-SEEEEEESSGG----
T ss_pred HHHHHHHHHHhCCCeeEEecCcccCCCHHHHHHhCCCCCCCCCCchHHHHHHHHHHHhccccCCCceeEEEecChh----
Confidence 45566788899999999999721 0 0 1245789999999988 9998766421
Q ss_pred CchhhHhHHHHhccc-CCC-----cEEEecCcccccccCCCCCCCchhHHHHHHHhcCCCcE-EEccCCCCCCCCCChHh
Q 019335 237 NDEESLAFSNLLKLS-RFP-----QVYVKFSALFRVSRMPFPYQDLSSPLSQVVSSFGANRV-MWGSDFPYVVPECGYKG 309 (342)
Q Consensus 237 ~~~~~~~~~~~~~l~-~~~-----Nvy~~~S~~~~~~~~~~~~~~~~~~l~~~i~~~G~dRi-lfGSD~P~~~~~~~~~~ 309 (342)
...++..++ .++ ||++...+++.... ..+...+..+.+..+..++ =+=||.=.. .+|.+
T Consensus 353 ------~~~~la~lag~F~~~~~~~vq~G~~WWF~D~~-----~gm~~q~~~~~~~~ll~~fvGmltDsRsf---lS~~R 418 (462)
T PF02614_consen 353 ------DNHELATLAGNFQDGGIPKVQLGGAWWFNDTP-----DGMERQMTALAEMGLLSNFVGMLTDSRSF---LSYPR 418 (462)
T ss_dssp ------GHHHHHHHHHHST-TTSTTEEEB---GGG-SH-----HHHHHHHHHHHHHCHGCGCB------SCT---THHHH
T ss_pred ------hHHHHHHHHhhcCCcCcceeeecCcccccCCH-----HHHHHHHHHHHHHhCccceeceecchHHH---hhhhH
Confidence 123333343 467 99999888776432 1233445555544433333 344663221 12322
Q ss_pred H---H----HHHHHHHhcCCCCHH------HHHHHHhHHHHHhc
Q 019335 310 G---R----EAASLIANEVPLSPS------ELEWIMGGTIMQLF 340 (342)
Q Consensus 310 ~---~----~~~~~~~~~~~l~~~------~~~~I~~~NA~rl~ 340 (342)
. + +.+.++.+..+++++ ..+.|+++||+++|
T Consensus 419 heyfRRilc~~lg~~ve~g~~p~d~~~l~~~v~di~y~na~~yf 462 (462)
T PF02614_consen 419 HEYFRRILCNVLGEWVEEGEWPEDEAFLGRIVEDICYNNAKRYF 462 (462)
T ss_dssp HHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHTHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHhHHHhC
Confidence 1 1 223333344566654 35689999999986
No 147
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=90.83 E-value=8.6 Score=35.55 Aligned_cols=128 Identities=12% Similarity=0.113 Sum_probs=73.4
Q ss_pred HHHHHHHhcCC-ceEEEecCCCCCCCCcCCcHHHHHHHHHHhhh---CCeEEEEeccCC---------------------
Q 019335 151 KQLEQLILKDG-FRAVRFNPYLWPSGQQMTNEVGKAMFSKAGEL---GVPVGFMCMKGL--------------------- 205 (342)
Q Consensus 151 ~eler~~~~~g-~~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e~---~lpv~iH~~~~~--------------------- 205 (342)
+.++++ .+.| +.||-+.... ..+..++.++...+.+.+.+. ++||.++++...
T Consensus 25 ~~i~~~-i~~G~v~gi~~~Gst-GE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~la~~a~~~Gad~v~v 102 (290)
T TIGR00683 25 QIIRHN-IDKMKVDGLYVGGST-GENFMLSTEEKKEIFRIAKDEAKDQIALIAQVGSVNLKEAVELGKYATELGYDCLSA 102 (290)
T ss_pred HHHHHH-HhCCCcCEEEECCcc-cccccCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHHhCCCEEEE
Confidence 344444 4677 8898777543 224567888878888766663 588888886321
Q ss_pred --C----CC----HHHHHHHHHhCCCCcEEecccCCCCCCCCchhhHhHHHHhcccCCCc-EEEecCcccccccCCCCCC
Q 019335 206 --N----LH----ISEIEELCTEFPSTTVLLDHLAFCKPPSNDEESLAFSNLLKLSRFPQ-VYVKFSALFRVSRMPFPYQ 274 (342)
Q Consensus 206 --~----~~----~~~l~~l~~~~P~lk~vl~H~G~~~p~~~~~~~~~~~~~~~l~~~~N-vy~~~S~~~~~~~~~~~~~ 274 (342)
| .. ...+..+++..+++.+++-|.=.. .+ .....+.+.+|++.|| +.+|-|.--
T Consensus 103 ~~P~y~~~~~~~i~~yf~~v~~~~~~lpv~lYn~P~~----tg-~~l~~~~i~~L~~~pnv~giK~s~~d---------- 167 (290)
T TIGR00683 103 VTPFYYKFSFPEIKHYYDTIIAETGGLNMIVYSIPFL----TG-VNMGIEQFGELYKNPKVLGVKFTAGD---------- 167 (290)
T ss_pred eCCcCCCCCHHHHHHHHHHHHhhCCCCCEEEEeCccc----cc-cCcCHHHHHHHhcCCCEEEEEeCCCC----------
Confidence 1 01 234667777777888888775321 11 0011233556777899 566765320
Q ss_pred CchhHHHHHHHhcCCCcEEEccC
Q 019335 275 DLSSPLSQVVSSFGANRVMWGSD 297 (342)
Q Consensus 275 ~~~~~l~~~i~~~G~dRilfGSD 297 (342)
. ..+.++++..+.-.|+.|+|
T Consensus 168 -~-~~~~~~~~~~~~~~v~~G~d 188 (290)
T TIGR00683 168 -F-YLLERLKKAYPNHLIWAGFD 188 (290)
T ss_pred -H-HHHHHHHHhCCCCEEEECch
Confidence 1 23455555554335666776
No 148
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=90.78 E-value=1.7 Score=39.75 Aligned_cols=117 Identities=14% Similarity=0.061 Sum_probs=64.6
Q ss_pred hHHHHHHhHHCCCceEEEeCCCCC---------------ccchHHHHHHHHhCCCcEEEEEEcCC------CCcchHHHH
Q 019335 94 VDFLLQCMEEASVDGALIVQPINH---------------KFDHSLVTSVLKKYPSKFVGCCLANP------AEDVIGIKQ 152 (342)
Q Consensus 94 ~~~ll~~md~~GI~~~v~~~~~~~---------------~~~N~~~~~~~~~~p~r~~g~~~i~p------~~~~~~~~e 152 (342)
...+++...++|+++.++-. ..+ ..+-..+.+++++..=.+.-...-.. .+.. ..+.
T Consensus 34 ~k~yIDfAa~~G~eYvlvD~-GW~~~~~~~~~d~~~~~~~~dl~elv~Ya~~KgVgi~lw~~~~~~~~~~~~~~~-~~~~ 111 (273)
T PF10566_consen 34 QKRYIDFAAEMGIEYVLVDA-GWYGWEKDDDFDFTKPIPDFDLPELVDYAKEKGVGIWLWYHSETGGNVANLEKQ-LDEA 111 (273)
T ss_dssp HHHHHHHHHHTT-SEEEEBT-TCCGS--TTT--TT-B-TT--HHHHHHHHHHTT-EEEEEEECCHTTBHHHHHCC-HHHH
T ss_pred HHHHHHHHHHcCCCEEEecc-ccccccccccccccccCCccCHHHHHHHHHHcCCCEEEEEeCCcchhhHhHHHH-HHHH
Confidence 35567777799999998743 222 12334566666654311111111111 1122 3456
Q ss_pred HHHHHhcCCceEEEecCCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEEeccCCCCCHHHHHHHHHhCCCC
Q 019335 153 LEQLILKDGFRAVRFNPYLWPSGQQMTNEVGKAMFSKAGELGVPVGFMCMKGLNLHISEIEELCTEFPST 222 (342)
Q Consensus 153 ler~~~~~g~~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH~~~~~~~~~~~l~~l~~~~P~l 222 (342)
+.++ ++.|++|||+.-.. .+++ ..-..++.+++.|+++++-|.+|-..- | .++-+.||++
T Consensus 112 f~~~-~~~Gv~GvKidF~~-~d~Q-~~v~~y~~i~~~AA~~~LmvnfHg~~k-P------tG~~RTyPN~ 171 (273)
T PF10566_consen 112 FKLY-AKWGVKGVKIDFMD-RDDQ-EMVNWYEDILEDAAEYKLMVNFHGATK-P------TGLRRTYPNL 171 (273)
T ss_dssp HHHH-HHCTEEEEEEE--S-STSH-HHHHHHHHHHHHHHHTT-EEEETTS----------TTHHHCSTTE
T ss_pred HHHH-HHcCCCEEeeCcCC-CCCH-HHHHHHHHHHHHHHHcCcEEEecCCcC-C------CcccccCccH
Confidence 6666 68999999987542 1111 122467899999999999999995311 1 3456677763
No 149
>PRK06151 N-ethylammeline chlorohydrolase; Provisional
Probab=90.57 E-value=5.5 Score=39.69 Aligned_cols=153 Identities=16% Similarity=0.158 Sum_probs=75.0
Q ss_pred CcCCcHHHHHHHHHHhhhCCeEEEEeccCCCCCHHHH--------HHHHHhCC--CCcEEecccCCCCCCCCchhhHhHH
Q 019335 176 QQMTNEVGKAMFSKAGELGVPVGFMCMKGLNLHISEI--------EELCTEFP--STTVLLDHLAFCKPPSNDEESLAFS 245 (342)
Q Consensus 176 ~~l~~~~~~~~~~~a~e~~lpv~iH~~~~~~~~~~~l--------~~l~~~~P--~lk~vl~H~G~~~p~~~~~~~~~~~ 245 (342)
...+.+.+..+++.|.++|++|.+|+..+. .....+ .+.+.++. +-++++.|+....+. ..++...-+
T Consensus 216 ~~~s~e~l~~~~~~A~~~g~~v~~H~~e~~-~~~~~~~~~~g~~~~~~~~~~g~l~~r~~l~H~~~l~~~-~~~~~~~~~ 293 (488)
T PRK06151 216 ETCTVDLLRRTAAAARELGCPVRLHCAQGV-LEVETVRRLHGTTPLEWLADVGLLGPRLLIPHATYISGS-PRLNYSGGD 293 (488)
T ss_pred CCCCHHHHHHHHHHHHHCCCcEEEEECCch-HHHHHHHHHcCCCHHHHHHHcCCCCCCcEEEEEEEcCCc-cccccCCHH
Confidence 346778999999999999999999997541 111111 12223332 567899999874320 000000001
Q ss_pred HHhcccCCCcEEEecCcccccccCCCCCCCchhHHHHHHHhcCCCcEEEccCCCCCCCCCChHhHHHH--HHHHHh--cC
Q 019335 246 NLLKLSRFPQVYVKFSALFRVSRMPFPYQDLSSPLSQVVSSFGANRVMWGSDFPYVVPECGYKGGREA--ASLIAN--EV 321 (342)
Q Consensus 246 ~~~~l~~~~Nvy~~~S~~~~~~~~~~~~~~~~~~l~~~i~~~G~dRilfGSD~P~~~~~~~~~~~~~~--~~~~~~--~~ 321 (342)
.+..+++. ++++..+..... ..+ ... .-++.+++. |. ++-+|||....+ .+...... +..+.. ..
T Consensus 294 ~~~~la~~-g~~v~~~P~~~~-~~g---~~~-~p~~~l~~~-Gv-~v~lGtD~~~~~---~~~~~~~~~~~~~~~~~~~~ 362 (488)
T PRK06151 294 DLALLAEH-GVSIVHCPLVSA-RHG---SAL-NSFDRYREA-GI-NLALGTDTFPPD---MVMNMRVGLILGRVVEGDLD 362 (488)
T ss_pred HHHHHHhc-CCEEEECchhhh-hhc---ccc-ccHHHHHHC-CC-cEEEECCCCCcc---HHHHHHHHHHHHHHhcCCCC
Confidence 22233333 355443321100 000 001 235565554 54 699999962211 11111111 111111 12
Q ss_pred CCCHHHHHHHHhHHHHHhcC
Q 019335 322 PLSPSELEWIMGGTIMQLFQ 341 (342)
Q Consensus 322 ~l~~~~~~~I~~~NA~rl~~ 341 (342)
.++.++.=+....|+.++++
T Consensus 363 ~~~~~~al~~aT~~~A~~lg 382 (488)
T PRK06151 363 AASAADLFDAATLGGARALG 382 (488)
T ss_pred CCCHHHHHHHHHHHHHHHhC
Confidence 35766666666677777664
No 150
>PRK08609 hypothetical protein; Provisional
Probab=89.31 E-value=22 Score=36.31 Aligned_cols=37 Identities=16% Similarity=0.097 Sum_probs=29.0
Q ss_pred CeeeeeeeccCCCCccCCCCCCCCCCCCCCCCChHHHHHHhHHCCCceEEEeC
Q 019335 61 KIIDSHLHVWASPEEAADKFPYFPGQEPTLPGHVDFLLQCMEEASVDGALIVQ 113 (342)
Q Consensus 61 ~iID~H~Hl~~~~~~~~~~~p~~~~~~~~~~~~~~~ll~~md~~GI~~~v~~~ 113 (342)
..+|.|+|....+ + ..+++++++...+.|++..++..
T Consensus 334 ~~~DlH~HT~~sD-----------g-----~~sleemv~~A~~~Gl~~i~iTd 370 (570)
T PRK08609 334 IQGDLHMHTTWSD-----------G-----AFSIEEMVEACIAKGYEYMAITD 370 (570)
T ss_pred hcCCccccCCCCC-----------C-----CCCHHHHHHHHHHCCCCEEEEeC
Confidence 4489999986321 1 35789999999999999999875
No 151
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=89.23 E-value=8.3 Score=35.54 Aligned_cols=128 Identities=19% Similarity=0.175 Sum_probs=73.2
Q ss_pred HHHHHHHhcC-CceEEEecCCCCCCCCcCCcHHHHHHHHHHhhh---CCeEEEEeccCC---------------------
Q 019335 151 KQLEQLILKD-GFRAVRFNPYLWPSGQQMTNEVGKAMFSKAGEL---GVPVGFMCMKGL--------------------- 205 (342)
Q Consensus 151 ~eler~~~~~-g~~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e~---~lpv~iH~~~~~--------------------- 205 (342)
+.++++ .+. |+.||-+.... .....++.++...+++.+.+. ++||.++++...
T Consensus 25 ~~i~~l-~~~~Gv~gi~~~Gst-GE~~~Lt~~Er~~~~~~~~~~~~~~~~viagv~~~~~~~ai~~a~~a~~~Gad~v~~ 102 (288)
T cd00954 25 AIVDYL-IEKQGVDGLYVNGST-GEGFLLSVEERKQIAEIVAEAAKGKVTLIAHVGSLNLKESQELAKHAEELGYDAISA 102 (288)
T ss_pred HHHHHH-HhcCCCCEEEECcCC-cCcccCCHHHHHHHHHHHHHHhCCCCeEEeccCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 344444 356 88888776543 223467777777777766552 578888776321
Q ss_pred --C-----C---CHHHHHHHHHhCCCCcEEecccCCCCCCCCchhhHhHHHHhcccCCCc-EEEecCcccccccCCCCCC
Q 019335 206 --N-----L---HISEIEELCTEFPSTTVLLDHLAFCKPPSNDEESLAFSNLLKLSRFPQ-VYVKFSALFRVSRMPFPYQ 274 (342)
Q Consensus 206 --~-----~---~~~~l~~l~~~~P~lk~vl~H~G~~~p~~~~~~~~~~~~~~~l~~~~N-vy~~~S~~~~~~~~~~~~~ 274 (342)
| . ....+..+++.-|++.+++-+.-.. .+ .....+.+.+|+++|| +.+|-|...
T Consensus 103 ~~P~y~~~~~~~i~~~~~~v~~a~~~lpi~iYn~P~~----tg-~~l~~~~~~~L~~~pnivgiK~s~~d---------- 167 (288)
T cd00954 103 ITPFYYKFSFEEIKDYYREIIAAAASLPMIIYHIPAL----TG-VNLTLEQFLELFEIPNVIGVKFTATD---------- 167 (288)
T ss_pred eCCCCCCCCHHHHHHHHHHHHHhcCCCCEEEEeCccc----cC-CCCCHHHHHHHhcCCCEEEEEeCCCC----------
Confidence 1 0 1235677888887888888665321 11 0111233556777888 667765421
Q ss_pred CchhHHHHHHHhcCCC-cEEEccC
Q 019335 275 DLSSPLSQVVSSFGAN-RVMWGSD 297 (342)
Q Consensus 275 ~~~~~l~~~i~~~G~d-RilfGSD 297 (342)
. ..+.++++..+.+ .++.|+|
T Consensus 168 -~-~~~~~~~~~~~~~~~v~~G~d 189 (288)
T cd00954 168 -L-YDLERIRAASPEDKLVLNGFD 189 (288)
T ss_pred -H-HHHHHHHHhCCCCcEEEEech
Confidence 1 2455566666533 5566666
No 152
>PRK04250 dihydroorotase; Provisional
Probab=89.18 E-value=22 Score=34.39 Aligned_cols=240 Identities=13% Similarity=0.074 Sum_probs=114.7
Q ss_pred CeeeeeeeccCCCCccCCCCCCCCCCCCCCCCChHHHHHHhHHCCCceEEEeCCCCCccchHHHHHHHH-hCCCc-EE--
Q 019335 61 KIIDSHLHVWASPEEAADKFPYFPGQEPTLPGHVDFLLQCMEEASVDGALIVQPINHKFDHSLVTSVLK-KYPSK-FV-- 136 (342)
Q Consensus 61 ~iID~H~Hl~~~~~~~~~~~p~~~~~~~~~~~~~~~ll~~md~~GI~~~v~~~~~~~~~~N~~~~~~~~-~~p~r-~~-- 136 (342)
-.||+|+|+.++.. ....+.+...+..-..||+..+.++...-..++...++... ...++ .+
T Consensus 48 G~ID~HvH~~~~~~--------------~~~e~~~~~~~aa~~gGvTtv~~~p~~~p~~~~~~~~~~~~~~~~~~~~vd~ 113 (398)
T PRK04250 48 GLIDVHVHLRDFEE--------------SYKETIESGTKAALHGGITLVFDMPNTKPPIMDEKTYEKRMRIAEKKSYADY 113 (398)
T ss_pred CEEeccccccCCCC--------------CcHHHHHHHHHHHHhCCeEEEEECCCCCCCCCcHHHHHHHHHHhCcCceeeE
Confidence 58999999953210 01223445555666789999888753221223332222222 21111 22
Q ss_pred EEEEcCCCCcchHHHHHHHHHhcCCceEEEecCCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEEeccCC-----CCC---
Q 019335 137 GCCLANPAEDVIGIKQLEQLILKDGFRAVRFNPYLWPSGQQMTNEVGKAMFSKAGELGVPVGFMCMKGL-----NLH--- 208 (342)
Q Consensus 137 g~~~i~p~~~~~~~~eler~~~~~g~~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH~~~~~-----~~~--- 208 (342)
++..+.+. ..+++..+. ..+++++ ... ..+ .+....+... ..+.+.++.+|+-+.. +..
T Consensus 114 ~~~~~~~~----~~~~l~~l~-~~~~k~f---~~~-~~~-~~~~~~~~~~---~~~~~~~v~~H~E~~~~~~~~~~~p~~ 180 (398)
T PRK04250 114 ALNFLIAG----NCEKAEEIK-ADFYKIF---MGA-STG-GIFSENFEVD---YACAPGIVSVHAEDPELIREFPERPPE 180 (398)
T ss_pred EEEEecCC----CHHHHHHHH-hhheEEE---Eec-CCC-chhHHHHHHH---HHhcCCeEEEEecChhhhhcccCCCHH
Confidence 22223332 233455443 2234433 111 011 1111122211 2333557999985321 111
Q ss_pred -----HHHHHHHHHhCCCCcEEecccCCCCCCCCchhhHhHHHHhcccCCCcEEEecCccccccc-----------CCCC
Q 019335 209 -----ISEIEELCTEFPSTTVLLDHLAFCKPPSNDEESLAFSNLLKLSRFPQVYVKFSALFRVSR-----------MPFP 272 (342)
Q Consensus 209 -----~~~l~~l~~~~P~lk~vl~H~G~~~p~~~~~~~~~~~~~~~l~~~~Nvy~~~S~~~~~~~-----------~~~~ 272 (342)
+..+..+++.+ +.++.+.|.... +. .+.+.+ +..++|.++++.-+.... ...|
T Consensus 181 aE~~av~r~~~la~~~-~~~lhi~HvSt~------~~---~~~i~~-~g~~~vt~Ev~ph~L~l~~~~~~~~~~~k~~PP 249 (398)
T PRK04250 181 AEVVAIERALEAGKKL-KKPLHICHISTK------DG---LKLILK-SNLPWVSFEVTPHHLFLTRKDYERNPLLKVYPP 249 (398)
T ss_pred HHHHHHHHHHHHHHHh-CCCEEEEeCCCH------HH---HHHHHH-cCCCcEEEEeCHHHhccCHHHHCCCCceEEcCC
Confidence 22345566655 789999999862 11 111211 122248888875432210 0113
Q ss_pred CCCchhHHHHHHHhcCCCcE-EEccC-CCCCCCCC--------ChHhHHHHHHHHHhcCCCCHHHHHHHHhHHHHHhcC
Q 019335 273 YQDLSSPLSQVVSSFGANRV-MWGSD-FPYVVPEC--------GYKGGREAASLIANEVPLSPSELEWIMGGTIMQLFQ 341 (342)
Q Consensus 273 ~~~~~~~l~~~i~~~G~dRi-lfGSD-~P~~~~~~--------~~~~~~~~~~~~~~~~~l~~~~~~~I~~~NA~rl~~ 341 (342)
..+ ..--+.+++.++ + | +.+|| -|+...+. +.+..+..+........++-++.-+++..|..++|+
T Consensus 250 LR~-~~d~~aL~~~l~-~-Id~i~sDHaP~~~~~k~~~~~G~~g~e~~lpl~~~~v~~~~lsl~~~v~~~t~npAk~lg 325 (398)
T PRK04250 250 LRS-EEDRKALWENFS-K-IPIIASDHAPHTLEDKEAGAAGIPGLETEVPLLLDAANKGMISLFDIVEKMHDNPARIFG 325 (398)
T ss_pred CCC-HHHHHHHHHhhc-c-CCEEEcCCcccCHHHhhcCCCCcchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhC
Confidence 222 233455666654 3 5 78999 57742210 122222222222223468999999999999999986
No 153
>TIGR03121 one_C_dehyd_A formylmethanofuran dehydrogenase subunit A. Members of this largely archaeal protein family are subunit A of the formylmethanofuran dehydrogenase. Nomenclature in some bacteria may reflect inclusion of the formyltransferase described by TIGR03119 as part of the complex, and therefore call this protein formyltransferase/hydrolase complex Fhc subunit A. Note that this model does not distinguish tungsten (FwdA) from molybdenum-containing (FmdA) forms of this enzyme; a single gene from this family is expressed constitutively in Methanobacterium thermoautotrophicum, which has both tungsten and molybdenum forms and may work interchangeably.
Probab=88.81 E-value=7.8 Score=39.17 Aligned_cols=158 Identities=15% Similarity=0.186 Sum_probs=86.7
Q ss_pred HHHHHHHHHhhhCCeEEEEecc---CCCCCHHHHHHHHHhCCCCc------EEecccCCCCCCCCchhhHhHH----HHh
Q 019335 182 VGKAMFSKAGELGVPVGFMCMK---GLNLHISEIEELCTEFPSTT------VLLDHLAFCKPPSNDEESLAFS----NLL 248 (342)
Q Consensus 182 ~~~~~~~~a~e~~lpv~iH~~~---~~~~~~~~l~~l~~~~P~lk------~vl~H~G~~~p~~~~~~~~~~~----~~~ 248 (342)
.+..+.++.+++|+|=-+|.+. |.|...+...+-++--.+++ +-+.|..+.- ..++.+..|. ++.
T Consensus 214 i~~~l~~~~e~l~lph~~h~H~nnlg~pgn~~~t~~t~~~~~g~~~~~~~~~h~tH~qf~s--yg~~~~~~f~s~a~~~a 291 (556)
T TIGR03121 214 IIKGLARANEELGLPHSIHVHCNNLGVPGNYETTLDTLDAAEGVKPNRNQVLHLTHVQFHS--YGGTSWRDFESGAEKIA 291 (556)
T ss_pred HHHHHHHHHHhcCCCceEEEecCCCCCCCchHHHHHHHHHhcCCCCCccceeEeeeeeeec--cCCCCCCCcchhHHHHH
Confidence 5677788888899987666643 22333333333333333444 6788886421 1112222232 233
Q ss_pred c-ccCCCcEEEecCcccc-----c-------------ccCCC--------------CC----CCchhHHHHHHH-hc---
Q 019335 249 K-LSRFPQVYVKFSALFR-----V-------------SRMPF--------------PY----QDLSSPLSQVVS-SF--- 287 (342)
Q Consensus 249 ~-l~~~~Nvy~~~S~~~~-----~-------------~~~~~--------------~~----~~~~~~l~~~i~-~~--- 287 (342)
+ +-++||+-+|+..+.- . ....| |+ ......++.++- .+
T Consensus 292 ~~vn~~~~~t~d~Gqv~fg~t~tmt~d~~~~~~~~~~~~~kw~~~d~e~e~g~gvvp~~y~~~~~v~~~qwaiglel~Ll 371 (556)
T TIGR03121 292 DYVNANPNVTIDVGQVTFGETTTMTADGPMEYDLHKLTGLKWANKDVELETGSGVVPFKYSPKNPVHALQWAIGLELFLL 371 (556)
T ss_pred HHHhcCCCEEEEeCceecCCceEEeccchhhhhcccCCCCceeeeeeecccCCceEEeeecCCCcchHHHHHHhhHHHHh
Confidence 3 4578999999864411 0 00111 11 111223443333 11
Q ss_pred --CCCcEEEccCCCCCCCCCChHhHHHHH------HHHH--------h-------cCCCCHHHHHHHHhHHHHHhcC
Q 019335 288 --GANRVMWGSDFPYVVPECGYKGGREAA------SLIA--------N-------EVPLSPSELEWIMGGTIMQLFQ 341 (342)
Q Consensus 288 --G~dRilfGSD~P~~~~~~~~~~~~~~~------~~~~--------~-------~~~l~~~~~~~I~~~NA~rl~~ 341 (342)
.+.|+++-||.|...+...|++.+..+ ++++ + ...++-++.-++...|+.+.|+
T Consensus 372 ~~dp~~~~~ttDhPnggpf~~YP~ii~~lm~~~~r~~~~~~~~~~~~~~~~l~~~~Re~sL~EI~~mtTanPAkaLG 448 (556)
T TIGR03121 372 IKDPWRVFLTTDHPNGGPFTRYPRIIALLMSRKYREDMLSTVHPWAAARSTLGGIDREYSLYEIAIMTRAGPAKLLG 448 (556)
T ss_pred cCCcceeEEeccCCCCCcccchHHHHHHHcCHHHHHHHHHhcCHHHHhhcccccccCCCCHHHHHHHHHHHHHHHhC
Confidence 578999999999998877787644311 0111 0 1356777888888888888775
No 154
>PRK11170 nagA N-acetylglucosamine-6-phosphate deacetylase; Provisional
Probab=88.81 E-value=23 Score=34.10 Aligned_cols=246 Identities=14% Similarity=0.063 Sum_probs=127.7
Q ss_pred CeeeeeeeccCCCCccCCCCCCCCCCCCCCCCChHHHHHHhHHCCCceEEEeCCCCCccchHHHHHHH----HhCCCcEE
Q 019335 61 KIIDSHLHVWASPEEAADKFPYFPGQEPTLPGHVDFLLQCMEEASVDGALIVQPINHKFDHSLVTSVL----KKYPSKFV 136 (342)
Q Consensus 61 ~iID~H~Hl~~~~~~~~~~~p~~~~~~~~~~~~~~~ll~~md~~GI~~~v~~~~~~~~~~N~~~~~~~----~~~p~r~~ 136 (342)
-.||+|+|.+. ++............+.+...+.+-+.||+..+-+............++.. +....++.
T Consensus 54 G~ID~HvHG~~-------g~~~~~~~~~~~~~~l~~~~~~~~~~GvTt~lpT~it~~~~~~~~~l~~~~~~~~~~~a~~~ 126 (382)
T PRK11170 54 GFIDLQLNGCG-------GVQFNDTAEAISVETLEIMQKANEKSGCTSFLPTLITSSDELMKQAVRVMREYLAKHPNQAL 126 (382)
T ss_pred ceeeeeecCcc-------CcccccCccCCCHHHHHHHHHHHHhcCEeEEeeeccCCCHHHHHHHHHHHHHHHhcCCCeEE
Confidence 58999999752 11111100000011223333445577998877543211111111122222 22223577
Q ss_pred EEE----EcCCCC----cch-----HHHHHHHHHhcCCceEEEecCCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEEecc
Q 019335 137 GCC----LANPAE----DVI-----GIKQLEQLILKDGFRAVRFNPYLWPSGQQMTNEVGKAMFSKAGELGVPVGFMCMK 203 (342)
Q Consensus 137 g~~----~i~p~~----~~~-----~~~eler~~~~~g~~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH~~~ 203 (342)
|+- .++|.. +.+ ..++++++.+..+ ++++.... | . +. . .++.+.+.++|+.|.+--..
T Consensus 127 G~HlEGPfi~~~~~Gah~~~~~~~p~~~~~~~~~~~~~--~i~~iTlA-P--E-~~--~-~~~i~~l~~~gi~vs~GHs~ 197 (382)
T PRK11170 127 GLHLEGPYLNLVKKGTHNPEFIRKPDAEMVDFLCENAD--VITKVTLA-P--E-MV--D-AEVIRKLVEAGIVVSAGHSN 197 (382)
T ss_pred EEEeecCCCCcccCCCCCHHHhcCcCHHHHHHHHhccC--CEEEEEEC-C--C-CC--c-HHHHHHHHHCCcEEEeeCCc
Confidence 763 344431 111 2467777765433 35544321 1 1 22 2 37999999999999653222
Q ss_pred CCCCCHHHHHHHHHhCCCCcEEecccCCCCCCCCchhhHhHHHHh-cccCCCcEEEecCcccccccCCCCCCCchhHHHH
Q 019335 204 GLNLHISEIEELCTEFPSTTVLLDHLAFCKPPSNDEESLAFSNLL-KLSRFPQVYVKFSALFRVSRMPFPYQDLSSPLSQ 282 (342)
Q Consensus 204 ~~~~~~~~l~~l~~~~P~lk~vl~H~G~~~p~~~~~~~~~~~~~~-~l~~~~Nvy~~~S~~~~~~~~~~~~~~~~~~l~~ 282 (342)
...++....++. +.+ .+.|++.+.+.+.-+. .. +. .....+++|+++=.- . ..-....++-
T Consensus 198 ---A~~~~~~~a~~~--Ga~-~~THlfNaM~~~~hR~-pg---~vga~l~~~~~~~elI~D----g----~Hv~p~~~~~ 259 (382)
T PRK11170 198 ---ATYEEAKAGFRA--GIT-FATHLYNAMPYITGRE-PG---LVGAILDEPDVYCGIIAD----G----LHVDYANIRN 259 (382)
T ss_pred ---CCHHHHHHHHHc--CCC-EEeeccccCCcccCCC-cc---hhhHhhcCCCcEEEEEcC----c----ccCCHHHHHH
Confidence 244555555553 455 6679998766543211 11 21 222346788775321 0 0111257888
Q ss_pred HHHhcCCCcEEEccCCC--CCCCCC-------------------------ChHhHHHHHHHHHhcCCCCHHHHHHHHhHH
Q 019335 283 VVSSFGANRVMWGSDFP--YVVPEC-------------------------GYKGGREAASLIANEVPLSPSELEWIMGGT 335 (342)
Q Consensus 283 ~i~~~G~dRilfGSD~P--~~~~~~-------------------------~~~~~~~~~~~~~~~~~l~~~~~~~I~~~N 335 (342)
+++.-| +|++.=||.= -..+.+ +.....+.++.+.+..+++.++.-+....|
T Consensus 260 ~~~~k~-~~~~lvtDa~~~~G~~~g~y~l~~~~v~v~~g~~~~~~G~LAGs~l~l~~~v~~l~~~~~~~~~eal~~aT~n 338 (382)
T PRK11170 260 AKRLKG-DKLCLVTDATAPAGANIEQFIFAGKTIYYRDGLCVDENGTLSGSALTMIEAVRNLVEHVGIALDEALRMATLY 338 (382)
T ss_pred HHHhcC-CcEEEEeccccCCCCCCCeEEECCEEEEEECCEEECCCCcccccHhHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 888888 9999999931 111111 111233455555545789999999999999
Q ss_pred HHHhcC
Q 019335 336 IMQLFQ 341 (342)
Q Consensus 336 A~rl~~ 341 (342)
..++++
T Consensus 339 pA~~lg 344 (382)
T PRK11170 339 PARAIG 344 (382)
T ss_pred HHHHhC
Confidence 999886
No 155
>cd01312 Met_dep_hydrolase_D Metallo-dependent hydrolases, subgroup D is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=87.97 E-value=26 Score=33.68 Aligned_cols=29 Identities=14% Similarity=0.309 Sum_probs=25.0
Q ss_pred CcCCcHHHHHHHHHHhhhCCeEEEEeccC
Q 019335 176 QQMTNEVGKAMFSKAGELGVPVGFMCMKG 204 (342)
Q Consensus 176 ~~l~~~~~~~~~~~a~e~~lpv~iH~~~~ 204 (342)
...+++.+..+.+.|+++|+|+.+|+.+.
T Consensus 158 ~~~s~e~l~~~~~lA~~~g~~i~~Hl~E~ 186 (381)
T cd01312 158 YSVHPELAQDLIDLAKKLNLPLSTHFLES 186 (381)
T ss_pred cccCHHHHHHHHHHHHHcCCeEEEEecCc
Confidence 45677889999999999999999999753
No 156
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=87.67 E-value=12 Score=34.95 Aligned_cols=105 Identities=15% Similarity=0.135 Sum_probs=64.4
Q ss_pred HHHHHHHhcCCceEEEecCCCCCCCCcCCcHHHHHHHHHHhh---hCCeEEEEeccCC----------------------
Q 019335 151 KQLEQLILKDGFRAVRFNPYLWPSGQQMTNEVGKAMFSKAGE---LGVPVGFMCMKGL---------------------- 205 (342)
Q Consensus 151 ~eler~~~~~g~~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e---~~lpv~iH~~~~~---------------------- 205 (342)
+.++++ .+.|+.||-+.... .....+++++-..+++.+.+ -++||++|++...
T Consensus 33 ~lv~~l-i~~Gv~Gi~v~Gst-GE~~~Lt~eEr~~v~~~~~~~~~grvpvi~Gv~~~~t~~ai~~a~~A~~~Gad~vlv~ 110 (309)
T cd00952 33 RLVERL-IAAGVDGILTMGTF-GECATLTWEEKQAFVATVVETVAGRVPVFVGATTLNTRDTIARTRALLDLGADGTMLG 110 (309)
T ss_pred HHHHHH-HHcCCCEEEECccc-ccchhCCHHHHHHHHHHHHHHhCCCCCEEEEeccCCHHHHHHHHHHHHHhCCCEEEEC
Confidence 344444 46899999877653 22356888888888877655 3599999987421
Q ss_pred -CC--------CHHHHHHHHHhCCCCcEEecccCCCCCCCCchhhHhHHHHhcccCCCc-EEEecCc
Q 019335 206 -NL--------HISEIEELCTEFPSTTVLLDHLAFCKPPSNDEESLAFSNLLKLSRFPQ-VYVKFSA 262 (342)
Q Consensus 206 -~~--------~~~~l~~l~~~~P~lk~vl~H~G~~~p~~~~~~~~~~~~~~~l~~~~N-vy~~~S~ 262 (342)
|. ....+..+++.-|++.+++-|.-... + ....-+.+.+|+++|| +-+|-|.
T Consensus 111 ~P~y~~~~~~~l~~yf~~va~a~~~lPv~iYn~P~~t----g-~~l~~~~l~~L~~~pnivgiKdss 172 (309)
T cd00952 111 RPMWLPLDVDTAVQFYRDVAEAVPEMAIAIYANPEAF----K-FDFPRAAWAELAQIPQVVAAKYLG 172 (309)
T ss_pred CCcCCCCCHHHHHHHHHHHHHhCCCCcEEEEcCchhc----C-CCCCHHHHHHHhcCCCEEEEEecC
Confidence 10 12356777887767888887764211 1 0011223456778888 5566654
No 157
>PRK09356 imidazolonepropionase; Validated
Probab=87.44 E-value=28 Score=33.49 Aligned_cols=152 Identities=17% Similarity=0.139 Sum_probs=76.0
Q ss_pred CceEEEecCCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEEeccCCCCCHHHHHHHHHhCCCCcEEecccCCCCCCCCchh
Q 019335 161 GFRAVRFNPYLWPSGQQMTNEVGKAMFSKAGELGVPVGFMCMKGLNLHISEIEELCTEFPSTTVLLDHLAFCKPPSNDEE 240 (342)
Q Consensus 161 g~~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH~~~~~~~~~~~l~~l~~~~P~lk~vl~H~G~~~p~~~~~~ 240 (342)
++.+++.... ......+.+..+++.|.++|++|.+|+...... ..+ ..+.++.. ..+.|+.... ++
T Consensus 206 ~~~~i~~~~~----~~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~~--~~~-~~~~~~~~--~~~~H~~~~~----~~- 271 (406)
T PRK09356 206 LADAVDVFCE----TGAFSVEQSERVLEAAKALGLPVKIHAEQLSNL--GGA-ELAAEYGA--LSADHLEYLD----EA- 271 (406)
T ss_pred CcceEEEEec----CCCCCHHHHHHHHHHHHHCCCCEEEEEecccCC--CHH-HHHHHcCC--cEehHhhcCC----HH-
Confidence 4555554322 234567899999999999999999998632111 112 22333443 3467887632 11
Q ss_pred hHhHHHHhcccCCCcEEEecCcccccccCCCCCCCchhHHHHHHHhcCCCcEEEccCCCC-CCCCCChHhHHHHHHHHHh
Q 019335 241 SLAFSNLLKLSRFPQVYVKFSALFRVSRMPFPYQDLSSPLSQVVSSFGANRVMWGSDFPY-VVPECGYKGGREAASLIAN 319 (342)
Q Consensus 241 ~~~~~~~~~l~~~~Nvy~~~S~~~~~~~~~~~~~~~~~~l~~~i~~~G~dRilfGSD~P~-~~~~~~~~~~~~~~~~~~~ 319 (342)
. +..+++. ++++.........-.. ... .-++.+++. | -++.+|||.+. ..+ +......+.....
T Consensus 272 --~---~~~la~~-g~~~~~~P~~~~~l~~---~~~-~~~~~l~~~-G-i~v~lgtD~~~~~~~---~~~~~~~~~~~~~ 336 (406)
T PRK09356 272 --G---IAAMAEA-GTVAVLLPGAFYFLRE---TQY-PPARLLRDA-G-VPVALATDFNPGSSP---TESLLLAMNMACT 336 (406)
T ss_pred --H---HHHHHHh-CCEEEECccchhhcCc---ccC-chHHHHHHC-C-CeEEEeCCCCCCCCh---hHHHHHHHHHHhh
Confidence 1 2223322 2443333221100000 001 225555555 4 68899999742 222 2222222211112
Q ss_pred cCCCCHHHHHHHHhHHHHHhcC
Q 019335 320 EVPLSPSELEWIMGGTIMQLFQ 341 (342)
Q Consensus 320 ~~~l~~~~~~~I~~~NA~rl~~ 341 (342)
..+++.++.=+....|+.+.++
T Consensus 337 ~~~l~~~~~l~~~T~~~A~~~g 358 (406)
T PRK09356 337 LFRLTPEEALAAVTINAARALG 358 (406)
T ss_pred hcCCCHHHHHHHHHHHHHHHhC
Confidence 3578887766666666666653
No 158
>cd01306 PhnM PhnM is believed to be a subunit of the membrane associated C-P lyase complex. C-P lyase is thought to catalyze the direct cleavage of inactivated C-P bonds to yield inorganic phosphate and the corresponding hydrocarbons. It is responsible for cleavage of alkylphosphonates, which are utilized as sole phosphorus sources by many bacteria.
Probab=87.36 E-value=26 Score=33.00 Aligned_cols=209 Identities=11% Similarity=0.004 Sum_probs=105.1
Q ss_pred HhHHCCCceEEEeCC-C-CC-c-cch---HHHHHHHHhCC--CcEEEEEEcC----CCCcchHHHHHHHHHhcCCceEEE
Q 019335 100 CMEEASVDGALIVQP-I-NH-K-FDH---SLVTSVLKKYP--SKFVGCCLAN----PAEDVIGIKQLEQLILKDGFRAVR 166 (342)
Q Consensus 100 ~md~~GI~~~v~~~~-~-~~-~-~~N---~~~~~~~~~~p--~r~~g~~~i~----p~~~~~~~~eler~~~~~g~~Gvk 166 (342)
++-.+||+.+..... + .. + ... ..+++.....- +++..=..++ ...++ .+++++.++...++.=|-
T Consensus 36 ~~~a~GiTT~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~hlR~E~~~~~-~~~~~~~~~~~~~v~lvs 114 (325)
T cd01306 36 QLAAAGITTVFDALSFGDEEGGRRRLRNLRKLIDAIRELHARGVLRADHRLHLRCELADPA-VLPELESLMADPRVHLVS 114 (325)
T ss_pred HHHhcCcccceeeeEeccccCCcccHHHHHHHHHHHHHhhhCCcchhhcceEEEEeecCcc-HHHHHHHHhcCCCcCEEE
Confidence 556789998776432 1 11 1 112 23444444332 2333212222 22333 778899988777776666
Q ss_pred ecCCCCCC-----------------CC-----------------cCCcHHHHHHHHHHhhhCCeEEEEeccCCCCCHHHH
Q 019335 167 FNPYLWPS-----------------GQ-----------------QMTNEVGKAMFSKAGELGVPVGFMCMKGLNLHISEI 212 (342)
Q Consensus 167 ~~~~~~~~-----------------g~-----------------~l~~~~~~~~~~~a~e~~lpv~iH~~~~~~~~~~~l 212 (342)
++-....+ |. ....+....+++.|.++|+|+..|.... ...+
T Consensus 115 ~~dH~pg~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~A~~~gl~vasH~d~~----~~~v 190 (325)
T cd01306 115 LMDHTPGQRQFRDLEKYREYYAKKYGLSDEEVEEAILERKARAAAYAPANRSELAALARARGIPLASHDDDT----PEHV 190 (325)
T ss_pred EeCCCCccccccCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHCCCcEEEecCCC----hHHH
Confidence 65221000 10 1223567788999999999999998632 3445
Q ss_pred HHHHHhCCCCcEEecccCCCCCCCCchhhHhHHHHhcccCCCcEEEecCcccccccCCCCCCCchhHHHHHHHhcCCCcE
Q 019335 213 EELCTEFPSTTVLLDHLAFCKPPSNDEESLAFSNLLKLSRFPQVYVKFSALFRVSRMPFPYQDLSSPLSQVVSSFGANRV 292 (342)
Q Consensus 213 ~~l~~~~P~lk~vl~H~G~~~p~~~~~~~~~~~~~~~l~~~~Nvy~~~S~~~~~~~~~~~~~~~~~~l~~~i~~~G~dRi 292 (342)
....+ . ++.++ .|. . .. ..++.+ +..++++..+..... +.+ ..... ..+..+++. |. .+
T Consensus 191 ~~a~~-~-Gv~~~-E~p-~-----t~---e~a~~a----~~~G~~vv~gapn~l-rg~-s~~g~-~~~~~ll~~-Gv-~~ 249 (325)
T cd01306 191 AEAHE-L-GVVIS-EFP-T-----TL---EAAKAA----RELGLQTLMGAPNVV-RGG-SHSGN-VSARELAAH-GL-LD 249 (325)
T ss_pred HHHHH-C-CCeec-cCC-C-----CH---HHHHHH----HHCCCEEEecCcccc-cCc-ccccc-HhHHHHHHC-CC-eE
Confidence 55554 2 55433 222 1 11 112211 112344443321000 000 00001 234555554 55 47
Q ss_pred EEccCCCCCCCCCChHhHHHHHHHHHhcCCCCHHHHHHHHhHHHHHhcC
Q 019335 293 MWGSDFPYVVPECGYKGGREAASLIANEVPLSPSELEWIMGGTIMQLFQ 341 (342)
Q Consensus 293 lfGSD~P~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~I~~~NA~rl~~ 341 (342)
.+|||+... ++ ......+....+++.++.=+....|+.++++
T Consensus 250 al~SD~~p~----sl---l~~~~~la~~~gl~l~eAl~~aT~nPA~~lG 291 (325)
T cd01306 250 ILSSDYVPA----SL---LHAAFRLADLGGWSLPEAVALVSANPARAVG 291 (325)
T ss_pred EEEcCCCcH----hH---HHHHHHHHHHcCCCHHHHHHHHhHHHHHHcC
Confidence 899999432 11 1222223334678998888888999988875
No 159
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=87.31 E-value=6.2 Score=35.81 Aligned_cols=126 Identities=21% Similarity=0.293 Sum_probs=69.4
Q ss_pred HHHHhHHCCCceEEEeCCC--------------CCccchHHHHHHHHh-------CCCcEEEEEEcCCCCcchHHHHHHH
Q 019335 97 LLQCMEEASVDGALIVQPI--------------NHKFDHSLVTSVLKK-------YPSKFVGCCLANPAEDVIGIKQLEQ 155 (342)
Q Consensus 97 ll~~md~~GI~~~v~~~~~--------------~~~~~N~~~~~~~~~-------~p~r~~g~~~i~p~~~~~~~~eler 155 (342)
.-+..++.|+|-.++..+. +|+..|+.+.++.++ -| .+.|++.-||... ...-|++
T Consensus 27 sAk~ae~gGaDlI~~ynsGrfR~~G~~SlagllpygnaN~iv~em~~eiLp~v~~tP-ViaGv~atDP~~~--~~~fl~~ 103 (268)
T PF09370_consen 27 SAKCAEKGGADLILIYNSGRFRMAGRGSLAGLLPYGNANEIVMEMAREILPVVKDTP-VIAGVCATDPFRD--MDRFLDE 103 (268)
T ss_dssp HHHHHHHTT-SEEEE-HHHHHHHTT--GGGGGBTEEEHHHHHHHHHHHHGGG-SSS--EEEEE-TT-TT----HHHHHHH
T ss_pred hhHHHHhcCCCEEEEecchhHhhCCCcchhhhhcccCHhHHHHHHHHhhhhhccCCC-EEEEecCcCCCCc--HHHHHHH
Confidence 3455668899998887421 366789988888754 23 5677888888753 2234444
Q ss_pred HHhcCCceEEEecCCCC-CCCC--------cCCcHHHHHHHHHHhhhCCeEEEEeccCCCCCHHHHHHHHHhCCCCcEEe
Q 019335 156 LILKDGFRAVRFNPYLW-PSGQ--------QMTNEVGKAMFSKAGELGVPVGFMCMKGLNLHISEIEELCTEFPSTTVLL 226 (342)
Q Consensus 156 ~~~~~g~~Gvk~~~~~~-~~g~--------~l~~~~~~~~~~~a~e~~lpv~iH~~~~~~~~~~~l~~l~~~~P~lk~vl 226 (342)
+ ++.||.||.=.|... -+|. -+.-..=-+.+++|.+.|+.-.-.+. ..++...+++.=.+ +++
T Consensus 104 l-k~~Gf~GV~NfPTvgliDG~fR~~LEe~Gmgy~~EVemi~~A~~~gl~T~~yvf-----~~e~A~~M~~AGaD--iiv 175 (268)
T PF09370_consen 104 L-KELGFSGVQNFPTVGLIDGQFRQNLEETGMGYDREVEMIRKAHEKGLFTTAYVF-----NEEQARAMAEAGAD--IIV 175 (268)
T ss_dssp H-HHHT-SEEEE-S-GGG--HHHHHHHHHTT--HHHHHHHHHHHHHTT-EE--EE------SHHHHHHHHHHT-S--EEE
T ss_pred H-HHhCCceEEECCcceeeccHHHHHHHhcCCCHHHHHHHHHHHHHCCCeeeeeec-----CHHHHHHHHHcCCC--EEE
Confidence 4 677999997544420 0111 11222334678899999988766655 45778888876544 799
Q ss_pred cccCCCC
Q 019335 227 DHLAFCK 233 (342)
Q Consensus 227 ~H~G~~~ 233 (342)
.|+|.-.
T Consensus 176 ~H~GlT~ 182 (268)
T PF09370_consen 176 AHMGLTT 182 (268)
T ss_dssp EE-SS--
T ss_pred ecCCccC
Confidence 9999843
No 160
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=87.01 E-value=18 Score=33.54 Aligned_cols=128 Identities=16% Similarity=0.145 Sum_probs=74.3
Q ss_pred HHHHHHHhcCCceEEEecCCCCCCCCcCCcHHHHHHHHHHhh---hCCeEEEEeccCC----------------------
Q 019335 151 KQLEQLILKDGFRAVRFNPYLWPSGQQMTNEVGKAMFSKAGE---LGVPVGFMCMKGL---------------------- 205 (342)
Q Consensus 151 ~eler~~~~~g~~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e---~~lpv~iH~~~~~---------------------- 205 (342)
+.++++ .+.|+.||-+.... .....|+.++-..+++.+.+ -++||..|++...
T Consensus 25 ~lv~~~-~~~Gv~gi~v~Gst-GE~~~Ls~~Er~~l~~~~~~~~~g~~pvi~gv~~~~t~~ai~~a~~A~~~Gad~v~v~ 102 (294)
T TIGR02313 25 ELIEFQ-IEGGSHAISVGGTS-GEPGSLTLEERKQAIENAIDQIAGRIPFAPGTGALNHDETLELTKFAEEAGADAAMVI 102 (294)
T ss_pred HHHHHH-HHcCCCEEEECccC-cccccCCHHHHHHHHHHHHHHhCCCCcEEEECCcchHHHHHHHHHHHHHcCCCEEEEc
Confidence 334444 46799999877553 23456777777777765543 3589988886321
Q ss_pred -C-----C---CHHHHHHHHHhCCCCcEEecccCCCCCCCCchhhHhHHHHhccc-CCCc-EEEecCcccccccCCCCCC
Q 019335 206 -N-----L---HISEIEELCTEFPSTTVLLDHLAFCKPPSNDEESLAFSNLLKLS-RFPQ-VYVKFSALFRVSRMPFPYQ 274 (342)
Q Consensus 206 -~-----~---~~~~l~~l~~~~P~lk~vl~H~G~~~p~~~~~~~~~~~~~~~l~-~~~N-vy~~~S~~~~~~~~~~~~~ 274 (342)
| . ....+..+++.-|++.+++-+.-.... .....+.+.+|+ ++|| +.+|-|.-
T Consensus 103 pP~y~~~~~~~l~~~f~~ia~a~~~lpv~iYn~P~~tg-----~~l~~~~l~~L~~~~pnv~giK~ss~----------- 166 (294)
T TIGR02313 103 VPYYNKPNQEALYDHFAEVADAVPDFPIIIYNIPGRAA-----QEIAPKTMARLRKDCPNIVGAKESNK----------- 166 (294)
T ss_pred CccCCCCCHHHHHHHHHHHHHhccCCCEEEEeCchhcC-----cCCCHHHHHHHHhhCCCEEEEEeCCC-----------
Confidence 1 0 123567788877789999877643110 011233456676 5899 55666532
Q ss_pred CchhHHHHHHHhcCCC-cEEEccC
Q 019335 275 DLSSPLSQVVSSFGAN-RVMWGSD 297 (342)
Q Consensus 275 ~~~~~l~~~i~~~G~d-RilfGSD 297 (342)
++ ..+.++++..+.+ .++-|+|
T Consensus 167 d~-~~~~~~~~~~~~~~~v~~G~d 189 (294)
T TIGR02313 167 DF-EHLNHLFLEAGRDFLLFCGIE 189 (294)
T ss_pred CH-HHHHHHHHhcCCCeEEEEcch
Confidence 11 3345555665544 4566776
No 161
>PRK07945 hypothetical protein; Provisional
Probab=86.25 E-value=31 Score=32.67 Aligned_cols=40 Identities=13% Similarity=0.023 Sum_probs=31.1
Q ss_pred CCCCeeeeeeeccCCCCccCCCCCCCCCCCCCCCCChHHHHHHhHHCCCceEEEeC
Q 019335 58 SKVKIIDSHLHVWASPEEAADKFPYFPGQEPTLPGHVDFLLQCMEEASVDGALIVQ 113 (342)
Q Consensus 58 ~~~~iID~H~Hl~~~~~~~~~~~p~~~~~~~~~~~~~~~ll~~md~~GI~~~v~~~ 113 (342)
.....+|.|+|-..+ .+ ..+++++++...+.|++...+..
T Consensus 93 ~~~~~~D~H~HT~~S-----------dg-----~~~~ee~v~~Ai~~Gl~~i~~TD 132 (335)
T PRK07945 93 RAALRGDLHTHSDWS-----------DG-----GSPIEEMARTAAALGHEYCALTD 132 (335)
T ss_pred HHHHhhhcccccCCC-----------CC-----CCCHHHHHHHHHHCCCCEEEEeC
Confidence 345679999997642 11 35799999999999999988874
No 162
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=86.04 E-value=25 Score=31.54 Aligned_cols=134 Identities=10% Similarity=-0.031 Sum_probs=79.0
Q ss_pred CChHHHHHHhHHCCCceEEEeCCCCCccchHHHHHHHHhCCCcEEEEEE-------------cCCCCcchHHHHHHHH--
Q 019335 92 GHVDFLLQCMEEASVDGALIVQPINHKFDHSLVTSVLKKYPSKFVGCCL-------------ANPAEDVIGIKQLEQL-- 156 (342)
Q Consensus 92 ~~~~~ll~~md~~GI~~~v~~~~~~~~~~N~~~~~~~~~~p~r~~g~~~-------------i~p~~~~~~~~eler~-- 156 (342)
.+.++.++.+.+.|.++.=+..+ ...+-+.+.+.++++.=.+...+. .+|...+...+.++++
T Consensus 15 ~~l~~~l~~~a~~Gf~~VEl~~~--~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 92 (258)
T PRK09997 15 YDFLARFEKAAQCGFRGVEFMFP--YDYDIEELKQVLASNKLEHTLHNLPAGDWAAGERGIACIPGREEEFRDGVAAAIR 92 (258)
T ss_pred CCHHHHHHHHHHhCCCEEEEcCC--CCCCHHHHHHHHHHcCCcEEEEcCCCCccccCcCccccCCCcHHHHHHHHHHHHH
Confidence 47889999999999988766542 233456777888777423332110 1222222223444543
Q ss_pred -HhcCCceEEEecCCCCCCCCcC------CcHHHHHHHHHHhhhCCeEEEEeccC-----C-CCCHHHHHHHHHhC--CC
Q 019335 157 -ILKDGFRAVRFNPYLWPSGQQM------TNEVGKAMFSKAGELGVPVGFMCMKG-----L-NLHISEIEELCTEF--PS 221 (342)
Q Consensus 157 -~~~~g~~Gvk~~~~~~~~g~~l------~~~~~~~~~~~a~e~~lpv~iH~~~~-----~-~~~~~~l~~l~~~~--P~ 221 (342)
+++.|..-|.+.....+.+... -...+..+-+.|+++|+.+.+|.... . -....+...++++. |+
T Consensus 93 ~a~~lga~~i~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~~n~~~~~~~~~~~~~~~~~ll~~v~~~~ 172 (258)
T PRK09997 93 YARALGNKKINCLVGKTPAGFSSEQIHATLVENLRYAANMLMKEDILLLIEPINHFDIPGFHLTGTRQALKLIDDVGCCN 172 (258)
T ss_pred HHHHhCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeCCCcCCCCCccCCHHHHHHHHHHhCCCC
Confidence 4578888777654321111110 11345666778889999999986321 0 12356777788765 78
Q ss_pred CcEEec
Q 019335 222 TTVLLD 227 (342)
Q Consensus 222 lk~vl~ 227 (342)
++++++
T Consensus 173 v~l~~D 178 (258)
T PRK09997 173 LKIQYD 178 (258)
T ss_pred EEEEeE
Confidence 998885
No 163
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=86.00 E-value=17 Score=33.20 Aligned_cols=127 Identities=18% Similarity=0.212 Sum_probs=72.7
Q ss_pred HHHHHHHhcCCceEEEecCCCCCCCCcCCcHHHHHHHHHHhhh---CCeEEEEeccCC----------------------
Q 019335 151 KQLEQLILKDGFRAVRFNPYLWPSGQQMTNEVGKAMFSKAGEL---GVPVGFMCMKGL---------------------- 205 (342)
Q Consensus 151 ~eler~~~~~g~~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e~---~lpv~iH~~~~~---------------------- 205 (342)
+.++++ .+.|+.||-+.... ..+..++.++...+.+.+.+. ++||.++++...
T Consensus 22 ~~i~~l-~~~Gv~gi~~~Gst-GE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~Gad~v~v~ 99 (281)
T cd00408 22 RLVEFL-IEAGVDGLVVLGTT-GEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVGANSTREAIELARHAEEAGADGVLVV 99 (281)
T ss_pred HHHHHH-HHcCCCEEEECCCC-cccccCCHHHHHHHHHHHHHHhCCCCeEEEecCCccHHHHHHHHHHHHHcCCCEEEEC
Confidence 344444 46799998777543 234567877777787776653 589988886421
Q ss_pred -CC----C----HHHHHHHHHhCCCCcEEecccCCCCCCCCchhhHhHHHHhcccCCCc-EEEecCcccccccCCCCCCC
Q 019335 206 -NL----H----ISEIEELCTEFPSTTVLLDHLAFCKPPSNDEESLAFSNLLKLSRFPQ-VYVKFSALFRVSRMPFPYQD 275 (342)
Q Consensus 206 -~~----~----~~~l~~l~~~~P~lk~vl~H~G~~~p~~~~~~~~~~~~~~~l~~~~N-vy~~~S~~~~~~~~~~~~~~ 275 (342)
|. . ...+..+++. .++.+++-|.-... + .....+.+.+|++.|| +.+|.|..-
T Consensus 100 pP~y~~~~~~~~~~~~~~ia~~-~~~pi~iYn~P~~t----g-~~l~~~~~~~L~~~~~v~giK~s~~d----------- 162 (281)
T cd00408 100 PPYYNKPSQEGIVAHFKAVADA-SDLPVILYNIPGRT----G-VDLSPETIARLAEHPNIVGIKDSSGD----------- 162 (281)
T ss_pred CCcCCCCCHHHHHHHHHHHHhc-CCCCEEEEECcccc----C-CCCCHHHHHHHhcCCCEEEEEeCCCC-----------
Confidence 10 0 1245566665 56888887664321 0 1112334556777888 667766421
Q ss_pred chhHHHHHHHhcCCC-cEEEccC
Q 019335 276 LSSPLSQVVSSFGAN-RVMWGSD 297 (342)
Q Consensus 276 ~~~~l~~~i~~~G~d-RilfGSD 297 (342)
...+.++++..+.+ +++.|.|
T Consensus 163 -~~~~~~~~~~~~~~~~v~~G~d 184 (281)
T cd00408 163 -LDRLTRLIALLGPDFAVLSGDD 184 (281)
T ss_pred -HHHHHHHHHhcCCCeEEEEcch
Confidence 13455666666544 3344555
No 164
>cd01321 ADGF Adenosine deaminase-related growth factors (ADGF), a novel family of secreted growth-factors with sequence similarty to adenosine deaminase.
Probab=85.92 E-value=32 Score=32.65 Aligned_cols=152 Identities=9% Similarity=-0.074 Sum_probs=75.9
Q ss_pred CceEEEecCCCCCCCCcCCcHHHHHHHHHHhhhC--CeEEEEeccCCC---CCHHHHHHHHHhCCCCcEEecccCCCCCC
Q 019335 161 GFRAVRFNPYLWPSGQQMTNEVGKAMFSKAGELG--VPVGFMCMKGLN---LHISEIEELCTEFPSTTVLLDHLAFCKPP 235 (342)
Q Consensus 161 g~~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e~~--lpv~iH~~~~~~---~~~~~l~~l~~~~P~lk~vl~H~G~~~p~ 235 (342)
+++||.+.... .....-..+.+.|++|.+.| +++.+|.|+..+ .....+.+.+. + +.+ =|+|+-...
T Consensus 162 ~VvGidL~G~E---~~~~~~~~f~~~f~~ar~~g~~l~~t~HAGE~~~~~~~~~~~v~~al~-l-g~~-RIGHG~~~~-- 233 (345)
T cd01321 162 FIAGFDLVGQE---DAGRPLLDFLPQLLWFPKQCAEIPFFFHAGETNGDGTETDENLVDALL-L-NTK-RIGHGFALP-- 233 (345)
T ss_pred eEEEEecCCCc---cCCCCHHHHHHHHHHHHHhCCCCceEeecCCCcCCCCCChhHHHHHHH-h-CCC-cCccccccC--
Confidence 48899887542 11112357889999999999 999999996532 11234444443 2 222 245654421
Q ss_pred CCchhhHhHHHHhcccCCCcEEEecCcccccccCCCCCCCchhHHHHHHHhcCCCcEEEccCCCCCCCCCChHhHHHHHH
Q 019335 236 SNDEESLAFSNLLKLSRFPQVYVKFSALFRVSRMPFPYQDLSSPLSQVVSSFGANRVMWGSDFPYVVPECGYKGGREAAS 315 (342)
Q Consensus 236 ~~~~~~~~~~~~~~l~~~~Nvy~~~S~~~~~~~~~~~~~~~~~~l~~~i~~~G~dRilfGSD~P~~~~~~~~~~~~~~~~ 315 (342)
.. ..++++.+..++-++++..-.......+.....| ++.+++. |. .|-.+||-|......+... .+.
T Consensus 234 -~d------p~ll~~l~~~~I~lEvCPtSN~~~~~v~~~~~HP-l~~ll~~-Gv-~vtinTDDp~~f~t~~l~~---Ey~ 300 (345)
T cd01321 234 -KH------PLLMDLVKKKNIAIEVCPISNQVLGLVSDLRNHP-AAALLAR-GV-PVVISSDDPGFWGAKGLSH---DFY 300 (345)
T ss_pred -cC------HHHHHHHHHcCCeEEECcchhhhhccccchhhCh-HHHHHHC-CC-eEEEeCCCcchhCCCCchH---HHH
Confidence 11 1233322223455555432111000001001123 6666665 55 6778999887643201111 111
Q ss_pred HHHhcCC---CCHHHHHHHHh
Q 019335 316 LIANEVP---LSPSELEWIMG 333 (342)
Q Consensus 316 ~~~~~~~---l~~~~~~~I~~ 333 (342)
.+.+..+ ++.++..++..
T Consensus 301 ~~~~~~g~~~l~~~~l~~l~~ 321 (345)
T cd01321 301 QAFMGLAPADAGLRGLKQLAE 321 (345)
T ss_pred HHHHHhccCCCCHHHHHHHHH
Confidence 2222345 88887777643
No 165
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=85.17 E-value=7.6 Score=34.92 Aligned_cols=118 Identities=22% Similarity=0.252 Sum_probs=63.2
Q ss_pred hHHHHHHHHhCCCcEEEEEEcCCCCcchHHHHHHHHHhcCCceEEEecCCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEE
Q 019335 121 HSLVTSVLKKYPSKFVGCCLANPAEDVIGIKQLEQLILKDGFRAVRFNPYLWPSGQQMTNEVGKAMFSKAGELGVPVGFM 200 (342)
Q Consensus 121 N~~~~~~~~~~p~r~~g~~~i~p~~~~~~~~eler~~~~~g~~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH 200 (342)
...+.++|++.. +..++ .|.+.+ +++.|+++ |+..+|+.... ++ ..++++++.+.|.||.+=
T Consensus 58 ~~~L~~~~~~~g--i~f~s--tpfd~~-s~d~l~~~----~~~~~KIaS~d------l~---n~~lL~~~A~tgkPvIlS 119 (241)
T PF03102_consen 58 HKELFEYCKELG--IDFFS--TPFDEE-SVDFLEEL----GVPAYKIASGD------LT---NLPLLEYIAKTGKPVILS 119 (241)
T ss_dssp HHHHHHHHHHTT---EEEE--EE-SHH-HHHHHHHH----T-SEEEE-GGG------TT----HHHHHHHHTT-S-EEEE
T ss_pred HHHHHHHHHHcC--CEEEE--CCCCHH-HHHHHHHc----CCCEEEecccc------cc---CHHHHHHHHHhCCcEEEE
Confidence 456777887764 33333 344433 56666444 88899988642 22 378999999999999998
Q ss_pred eccCCCCCHHHHHH---HHHhCCCCcEEecccCCCCCCCCchhhHhHHHHhccc-CCCcEEEecCc
Q 019335 201 CMKGLNLHISEIEE---LCTEFPSTTVLLDHLAFCKPPSNDEESLAFSNLLKLS-RFPQVYVKFSA 262 (342)
Q Consensus 201 ~~~~~~~~~~~l~~---l~~~~P~lk~vl~H~G~~~p~~~~~~~~~~~~~~~l~-~~~Nvy~~~S~ 262 (342)
+|- ..+.++.+ ++++-.+-++++-||-...|.. ....+++.+..|. +++ +-+..|.
T Consensus 120 TG~---stl~EI~~Av~~~~~~~~~~l~llHC~s~YP~~--~e~~NL~~i~~L~~~f~-~~vG~SD 179 (241)
T PF03102_consen 120 TGM---STLEEIERAVEVLREAGNEDLVLLHCVSSYPTP--PEDVNLRVIPTLKERFG-VPVGYSD 179 (241)
T ss_dssp -TT-----HHHHHHHHHHHHHHCT--EEEEEE-SSSS----GGG--TTHHHHHHHHST-SEEEEEE
T ss_pred CCC---CCHHHHHHHHHHHHhcCCCCEEEEecCCCCCCC--hHHcChHHHHHHHHhcC-CCEEeCC
Confidence 873 35555554 4433367889999998865531 1222333344454 355 5566664
No 166
>PRK08418 chlorohydrolase; Provisional
Probab=83.83 E-value=44 Score=32.44 Aligned_cols=29 Identities=10% Similarity=0.051 Sum_probs=25.1
Q ss_pred CcCCcHHHHHHHHHHhhhCCeEEEEeccC
Q 019335 176 QQMTNEVGKAMFSKAGELGVPVGFMCMKG 204 (342)
Q Consensus 176 ~~l~~~~~~~~~~~a~e~~lpv~iH~~~~ 204 (342)
...+++.+..+.+.|.++|+++.+|..++
T Consensus 185 ~t~s~e~l~~~~~~A~~~~~~i~~H~~E~ 213 (408)
T PRK08418 185 YSVHPILAKKALQLAKKENLLVSTHFLES 213 (408)
T ss_pred CCCCHHHHHHHHHHHHHcCCeEEEEecCC
Confidence 45667899999999999999999999753
No 167
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=83.69 E-value=34 Score=31.05 Aligned_cols=136 Identities=15% Similarity=0.050 Sum_probs=80.2
Q ss_pred CChHHHHHHhHHCCCceEEEeCCCCC---------ccchHHHHHHHHhCCCcEEEEEE-----cCCCCc-----chHHHH
Q 019335 92 GHVDFLLQCMEEASVDGALIVQPINH---------KFDHSLVTSVLKKYPSKFVGCCL-----ANPAED-----VIGIKQ 152 (342)
Q Consensus 92 ~~~~~ll~~md~~GI~~~v~~~~~~~---------~~~N~~~~~~~~~~p~r~~g~~~-----i~p~~~-----~~~~~e 152 (342)
.+.++.++.+.++|.++.=+...... ...-+.+.+.++++.=.+.+++. +++..+ ++.++.
T Consensus 21 ~~~~e~~~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gl~i~~~~~~~~~~~~~~~~~~~~r~~~~~~ 100 (283)
T PRK13209 21 ECWLEKLAIAKTAGFDFVEMSVDESDERLARLDWSREQRLALVNALVETGFRVNSMCLSAHRRFPLGSEDDAVRAQALEI 100 (283)
T ss_pred CCHHHHHHHHHHcCCCeEEEecCccccchhccCCCHHHHHHHHHHHHHcCCceeEEecccccccCCCCCCHHHHHHHHHH
Confidence 47899999999999998876432111 11123456666666423444331 222221 122334
Q ss_pred HHHHH---hcCCceEEEecCCCCCCCCcC------CcHHHHHHHHHHhhhCCeEEEEeccCC-CCCHHHHHHHHHhC--C
Q 019335 153 LEQLI---LKDGFRAVRFNPYLWPSGQQM------TNEVGKAMFSKAGELGVPVGFMCMKGL-NLHISEIEELCTEF--P 220 (342)
Q Consensus 153 ler~~---~~~g~~Gvk~~~~~~~~g~~l------~~~~~~~~~~~a~e~~lpv~iH~~~~~-~~~~~~l~~l~~~~--P 220 (342)
+++++ +..|..-|++.......+... ..+.+..+.+.|+++|+.+.++..... -..+....+++++. |
T Consensus 101 ~~~~i~~a~~lG~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~A~~~GV~i~iE~~~~~~~~~~~~~~~ll~~v~~~ 180 (283)
T PRK13209 101 MRKAIQLAQDLGIRVIQLAGYDVYYEQANNETRRRFIDGLKESVELASRASVTLAFEIMDTPFMNSISKALGYAHYLNSP 180 (283)
T ss_pred HHHHHHHHHHcCCCEEEECCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEeecCCcccCCHHHHHHHHHHhCCC
Confidence 44433 567888887764321111110 123567888999999999999976431 12456777888765 7
Q ss_pred CCcEEec
Q 019335 221 STTVLLD 227 (342)
Q Consensus 221 ~lk~vl~ 227 (342)
.++++++
T Consensus 181 ~lgl~~D 187 (283)
T PRK13209 181 WFQLYPD 187 (283)
T ss_pred ccceEec
Confidence 8888866
No 168
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=83.25 E-value=14 Score=34.83 Aligned_cols=163 Identities=15% Similarity=0.133 Sum_probs=84.4
Q ss_pred HHHHHHHHhCCCcEEEEEEcCCCCcchHHHHHHHHHhcCCceEEEecCCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEEe
Q 019335 122 SLVTSVLKKYPSKFVGCCLANPAEDVIGIKQLEQLILKDGFRAVRFNPYLWPSGQQMTNEVGKAMFSKAGELGVPVGFMC 201 (342)
Q Consensus 122 ~~~~~~~~~~p~r~~g~~~i~p~~~~~~~~eler~~~~~g~~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH~ 201 (342)
.++.+.|++.. +. ..-.|.+.+ +++.| .+.|+..+|+.... +++ .++++.+.+.|.||.+=+
T Consensus 79 ~~L~~~~~~~G--i~--~~stpfd~~-svd~l----~~~~v~~~KIaS~~------~~n---~pLL~~~A~~gkPvilSt 140 (329)
T TIGR03569 79 RELKEYCESKG--IE--FLSTPFDLE-SADFL----EDLGVPRFKIPSGE------ITN---APLLKKIARFGKPVILST 140 (329)
T ss_pred HHHHHHHHHhC--Cc--EEEEeCCHH-HHHHH----HhcCCCEEEECccc------ccC---HHHHHHHHhcCCcEEEEC
Confidence 34555555542 11 122444432 44555 34577788877532 222 799999999999999877
Q ss_pred ccCCCCCHHHHHH---HHHhCCCC--cEEecccCCCCCCCCchhhHhHHHHhcccCCCcEEEecCcccccccCCCCCCCc
Q 019335 202 MKGLNLHISEIEE---LCTEFPST--TVLLDHLAFCKPPSNDEESLAFSNLLKLSRFPQVYVKFSALFRVSRMPFPYQDL 276 (342)
Q Consensus 202 ~~~~~~~~~~l~~---l~~~~P~l--k~vl~H~G~~~p~~~~~~~~~~~~~~~l~~~~Nvy~~~S~~~~~~~~~~~~~~~ 276 (342)
|- ..+.++.. .+++.-+- ++++-||....|.... ..+...+..|.+.-++-+..|.- + .+.
T Consensus 141 Gm---atl~Ei~~Av~~i~~~G~~~~~i~llhC~s~YP~~~~--~~nL~~I~~Lk~~f~~pVG~SdH---t-~G~----- 206 (329)
T TIGR03569 141 GM---ATLEEIEAAVGVLRDAGTPDSNITLLHCTTEYPAPFE--DVNLNAMDTLKEAFDLPVGYSDH---T-LGI----- 206 (329)
T ss_pred CC---CCHHHHHHHHHHHHHcCCCcCcEEEEEECCCCCCCcc--cCCHHHHHHHHHHhCCCEEECCC---C-ccH-----
Confidence 63 35555544 44443322 4899999886553221 12223333333211233333421 0 010
Q ss_pred hhHHHHHH--------HhcCCCcEEEccCCCCCCCCCChHhHHHHHHHH
Q 019335 277 SSPLSQVV--------SSFGANRVMWGSDFPYVVPECGYKGGREAASLI 317 (342)
Q Consensus 277 ~~~l~~~i--------~~~G~dRilfGSD~P~~~~~~~~~~~~~~~~~~ 317 (342)
..-...+ ..|-+||=+.|+|.+....-..+.++++.++.+
T Consensus 207 -~~~~aAvalGA~iIEkH~tldk~~~G~D~~~Sl~p~el~~lv~~ir~~ 254 (329)
T TIGR03569 207 -EAPIAAVALGATVIEKHFTLDKNLPGPDHKASLEPDELKEMVQGIRNV 254 (329)
T ss_pred -HHHHHHHHcCCCEEEeCCChhhcCCCCChhhcCCHHHHHHHHHHHHHH
Confidence 1111111 144578889999987764323455555555443
No 169
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=83.17 E-value=28 Score=34.88 Aligned_cols=106 Identities=13% Similarity=0.174 Sum_probs=65.4
Q ss_pred HHHHHHhHHCCCceEEEeCCCCCccchHHHHHHHHhCCCcEEEEE--EcCCCCcchHHHHHHHHHhcCCceEEEecCCCC
Q 019335 95 DFLLQCMEEASVDGALIVQPINHKFDHSLVTSVLKKYPSKFVGCC--LANPAEDVIGIKQLEQLILKDGFRAVRFNPYLW 172 (342)
Q Consensus 95 ~~ll~~md~~GI~~~v~~~~~~~~~~N~~~~~~~~~~p~r~~g~~--~i~p~~~~~~~~eler~~~~~g~~Gvk~~~~~~ 172 (342)
+..++..-++||+..-++.+...-..-+...+.+++......+.. .+.|.+..+...++-+.+.+.|+..|.+--..
T Consensus 100 ~~fv~~a~~~Gidi~RIfd~lndv~nl~~ai~~vk~ag~~~~~~i~yt~sp~~t~e~~~~~a~~l~~~Gad~I~IkDta- 178 (499)
T PRK12330 100 DRFVEKSAENGMDVFRVFDALNDPRNLEHAMKAVKKVGKHAQGTICYTVSPIHTVEGFVEQAKRLLDMGADSICIKDMA- 178 (499)
T ss_pred HHHHHHHHHcCCCEEEEEecCChHHHHHHHHHHHHHhCCeEEEEEEEecCCCCCHHHHHHHHHHHHHcCCCEEEeCCCc-
Confidence 445666678899998777653332223566777777665444543 34776644444444444467899888776432
Q ss_pred CCCCcCCcHHHHHHHHHHhhh---CCeEEEEeccC
Q 019335 173 PSGQQMTNEVGKAMFSKAGEL---GVPVGFMCMKG 204 (342)
Q Consensus 173 ~~g~~l~~~~~~~~~~~a~e~---~lpv~iH~~~~ 204 (342)
| .+.=.....+++.+.+. ++||.+|+++.
T Consensus 179 --G-ll~P~~~~~LV~~Lk~~~~~~ipI~~H~Hnt 210 (499)
T PRK12330 179 --A-LLKPQPAYDIVKGIKEACGEDTRINLHCHST 210 (499)
T ss_pred --c-CCCHHHHHHHHHHHHHhCCCCCeEEEEeCCC
Confidence 2 22223567777777664 69999999854
No 170
>PRK09989 hypothetical protein; Provisional
Probab=82.97 E-value=35 Score=30.62 Aligned_cols=134 Identities=10% Similarity=0.055 Sum_probs=79.1
Q ss_pred CChHHHHHHhHHCCCceEEEeCCCCCccchHHHHHHHHhCCCcEEEEEE----cC---------CCCcchHHHHHHHHH-
Q 019335 92 GHVDFLLQCMEEASVDGALIVQPINHKFDHSLVTSVLKKYPSKFVGCCL----AN---------PAEDVIGIKQLEQLI- 157 (342)
Q Consensus 92 ~~~~~ll~~md~~GI~~~v~~~~~~~~~~N~~~~~~~~~~p~r~~g~~~----i~---------p~~~~~~~~eler~~- 157 (342)
.+.++.++.+.+.|.++.=+..+ +..+-+.+.++++++.=++..++. ++ +....+..+.+++.+
T Consensus 15 ~~l~~~l~~~~~~Gfd~VEl~~~--~~~~~~~~~~~l~~~Gl~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~ 92 (258)
T PRK09989 15 VPFIERFAAARKAGFDAVEFLFP--YDYSTLQIQKQLEQNHLTLALFNTAPGDINAGEWGLSALPGREHEARADIDLALE 92 (258)
T ss_pred CCHHHHHHHHHHcCCCEEEECCc--ccCCHHHHHHHHHHcCCcEEEeccCCCccCCCCCcccCCCccHHHHHHHHHHHHH
Confidence 47789999999999988755432 233456677777777433333321 11 111122334455543
Q ss_pred --hcCCceEEEecCCCCCCCCcC------CcHHHHHHHHHHhhhCCeEEEEecc-----CC-CCCHHHHHHHHHhC--CC
Q 019335 158 --LKDGFRAVRFNPYLWPSGQQM------TNEVGKAMFSKAGELGVPVGFMCMK-----GL-NLHISEIEELCTEF--PS 221 (342)
Q Consensus 158 --~~~g~~Gvk~~~~~~~~g~~l------~~~~~~~~~~~a~e~~lpv~iH~~~-----~~-~~~~~~l~~l~~~~--P~ 221 (342)
++.|..-|.+++...+.+... .-+.+..+.+.|++.|+.+.+-.-. +. -....+...++++. |+
T Consensus 93 ~A~~lg~~~v~v~~g~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~lE~l~~~~~~~~~~~~~~~~~~ll~~v~~~~ 172 (258)
T PRK09989 93 YALALNCEQVHVMAGVVPAGEDAERYRAVFIDNLRYAADRFAPHGKRILVEALSPGVKPHYLFSSQYQALAIVEEVARDN 172 (258)
T ss_pred HHHHhCcCEEEECccCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeCCCCCCCCCccCCHHHHHHHHHHcCCCC
Confidence 577888887665432212211 1246677788899999998775421 10 11345677788865 68
Q ss_pred CcEEec
Q 019335 222 TTVLLD 227 (342)
Q Consensus 222 lk~vl~ 227 (342)
+++.++
T Consensus 173 v~l~lD 178 (258)
T PRK09989 173 VFIQLD 178 (258)
T ss_pred eEEEee
Confidence 888886
No 171
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=82.36 E-value=6 Score=30.95 Aligned_cols=19 Identities=16% Similarity=0.129 Sum_probs=8.2
Q ss_pred CcHHHHHHHHHHhhhCCeE
Q 019335 179 TNEVGKAMFSKAGELGVPV 197 (342)
Q Consensus 179 ~~~~~~~~~~~a~e~~lpv 197 (342)
+.+.....=+.|+++|+-.
T Consensus 42 ~qp~~~~~~~~a~~~Gl~y 60 (110)
T PF04273_consen 42 GQPSSAEEAAAAEALGLQY 60 (110)
T ss_dssp T-T-HHCHHHHHHHCT-EE
T ss_pred CCCCHHHHHHHHHHcCCeE
Confidence 3344444445555556554
No 172
>PRK09229 N-formimino-L-glutamate deiminase; Validated
Probab=81.21 E-value=58 Score=32.03 Aligned_cols=54 Identities=15% Similarity=0.079 Sum_probs=35.7
Q ss_pred cCCcHHHHHHHHHHhhhCCeEEEEeccCCCCCHHH--------HHHHHHhCC--CCcEEecccCCC
Q 019335 177 QMTNEVGKAMFSKAGELGVPVGFMCMKGLNLHISE--------IEELCTEFP--STTVLLDHLAFC 232 (342)
Q Consensus 177 ~l~~~~~~~~~~~a~e~~lpv~iH~~~~~~~~~~~--------l~~l~~~~P--~lk~vl~H~G~~ 232 (342)
....+.++.+.+.+ ++|++|.+|+.+.. ..... -.+.+.+++ +-++++.|+...
T Consensus 212 ~~s~e~l~~~~~~A-~~g~~i~~H~~e~~-~e~~~~~~~~g~~~~~~l~~~g~l~~~~~l~H~~~l 275 (456)
T PRK09229 212 AVTPDQLAAVLALA-APDGPVHIHIAEQT-KEVDDCLAWSGARPVEWLLDHAPVDARWCLVHATHL 275 (456)
T ss_pred CCCHHHHHHHHHHh-cCCCceEEEeCCCH-HHHHHHHHHcCCCHHHHHHHcCCCCCCeEEEeeccC
Confidence 45678999999999 99999999997431 10000 012233333 457899999874
No 173
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=79.66 E-value=36 Score=34.93 Aligned_cols=106 Identities=13% Similarity=0.215 Sum_probs=64.8
Q ss_pred HHHHHHhHHCCCceEEEeCCCCCccchHHHHHHHHhCCCcEEEE--EEcCCCCcchHHHHHHHHHhcCCceEEEecCCCC
Q 019335 95 DFLLQCMEEASVDGALIVQPINHKFDHSLVTSVLKKYPSKFVGC--CLANPAEDVIGIKQLEQLILKDGFRAVRFNPYLW 172 (342)
Q Consensus 95 ~~ll~~md~~GI~~~v~~~~~~~~~~N~~~~~~~~~~p~r~~g~--~~i~p~~~~~~~~eler~~~~~g~~Gvk~~~~~~ 172 (342)
+..++.+.++||+..=++..-..-..-....+.+++......++ ...+|....+...++-+.+.+.|+..|.+--..
T Consensus 99 ~~~v~~a~~~Gidv~Rifd~lnd~~n~~~~i~~~k~~G~~~~~~i~yt~sp~~t~e~~~~~ak~l~~~Gad~I~IkDta- 177 (596)
T PRK14042 99 RAFVKLAVNNGVDVFRVFDALNDARNLKVAIDAIKSHKKHAQGAICYTTSPVHTLDNFLELGKKLAEMGCDSIAIKDMA- 177 (596)
T ss_pred HHHHHHHHHcCCCEEEEcccCcchHHHHHHHHHHHHcCCEEEEEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEeCCcc-
Confidence 45667788999999888765332222245577777776555554 235665543344444444467888888776432
Q ss_pred CCCCcCCcHHHHHHHHHHhh-hCCeEEEEeccC
Q 019335 173 PSGQQMTNEVGKAMFSKAGE-LGVPVGFMCMKG 204 (342)
Q Consensus 173 ~~g~~l~~~~~~~~~~~a~e-~~lpv~iH~~~~ 204 (342)
|. +.=.....+++.+.+ .++||.+|+++.
T Consensus 178 --G~-l~P~~v~~lv~alk~~~~ipi~~H~Hnt 207 (596)
T PRK14042 178 --GL-LTPTVTVELYAGLKQATGLPVHLHSHST 207 (596)
T ss_pred --cC-CCHHHHHHHHHHHHhhcCCEEEEEeCCC
Confidence 22 222355666666554 689999999854
No 174
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=78.26 E-value=44 Score=34.32 Aligned_cols=106 Identities=11% Similarity=0.185 Sum_probs=62.8
Q ss_pred HHHHHHhHHCCCceEEEeCCCCCccchHHHHHHHHhCCCcEEEEE--EcCCCCcchHHHHHHHHHhcCCceEEEecCCCC
Q 019335 95 DFLLQCMEEASVDGALIVQPINHKFDHSLVTSVLKKYPSKFVGCC--LANPAEDVIGIKQLEQLILKDGFRAVRFNPYLW 172 (342)
Q Consensus 95 ~~ll~~md~~GI~~~v~~~~~~~~~~N~~~~~~~~~~p~r~~g~~--~i~p~~~~~~~~eler~~~~~g~~Gvk~~~~~~ 172 (342)
+..++...++||+..-++.+......-....+++++......+.. ...|.+..+...++-+.+.+.|+..|.+--..
T Consensus 100 ~~~v~~a~~~Gid~~rifd~lnd~~~~~~ai~~ak~~G~~~~~~i~yt~~p~~~~~~~~~~a~~l~~~Gad~i~i~Dt~- 178 (593)
T PRK14040 100 ERFVERAVKNGMDVFRVFDAMNDPRNLETALKAVRKVGAHAQGTLSYTTSPVHTLQTWVDLAKQLEDMGVDSLCIKDMA- 178 (593)
T ss_pred HHHHHHHHhcCCCEEEEeeeCCcHHHHHHHHHHHHHcCCeEEEEEEEeeCCccCHHHHHHHHHHHHHcCCCEEEECCCC-
Confidence 445667788999988777542221112355677777754433432 24675544455455544467888888776432
Q ss_pred CCCCcCCcHHHHHHHHHHhh-hCCeEEEEeccC
Q 019335 173 PSGQQMTNEVGKAMFSKAGE-LGVPVGFMCMKG 204 (342)
Q Consensus 173 ~~g~~l~~~~~~~~~~~a~e-~~lpv~iH~~~~ 204 (342)
|. +.=.....+++.+.+ .++||.+|+++.
T Consensus 179 --G~-l~P~~~~~lv~~lk~~~~~pi~~H~Hnt 208 (593)
T PRK14040 179 --GL-LKPYAAYELVSRIKKRVDVPLHLHCHAT 208 (593)
T ss_pred --CC-cCHHHHHHHHHHHHHhcCCeEEEEECCC
Confidence 22 222345666666554 689999999854
No 175
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=77.62 E-value=54 Score=29.54 Aligned_cols=134 Identities=10% Similarity=0.057 Sum_probs=79.3
Q ss_pred CChHHHHHHhHHCCCceEEEeCCCCC-------ccchHHHHHHHHhCCCcEEEEEE------cCCC--Cc---chHHHHH
Q 019335 92 GHVDFLLQCMEEASVDGALIVQPINH-------KFDHSLVTSVLKKYPSKFVGCCL------ANPA--ED---VIGIKQL 153 (342)
Q Consensus 92 ~~~~~ll~~md~~GI~~~v~~~~~~~-------~~~N~~~~~~~~~~p~r~~g~~~------i~p~--~~---~~~~~el 153 (342)
.++++.++.+.+.|+++.=+.....+ ..+-+.+.+.++++.=.+.++.. .+.. ++ ++.++.+
T Consensus 13 ~~l~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~l~~~~~~~gl~v~s~~~~~~~~~~~~~~~~~~~r~~~~~~~ 92 (275)
T PRK09856 13 LPIEHAFRDASELGYDGIEIWGGRPHAFAPDLKAGGIKQIKALAQTYQMPIIGYTPETNGYPYNMMLGDEHMRRESLDMI 92 (275)
T ss_pred CCHHHHHHHHHHcCCCEEEEccCCccccccccCchHHHHHHHHHHHcCCeEEEecCcccCcCccccCCCHHHHHHHHHHH
Confidence 36889999999999998766421111 11234566666777544444321 1111 11 1233344
Q ss_pred HHH---HhcCCceEEEecCCCCCCCCcCC--------cHHHHHHHHHHhhhCCeEEEEeccCC----CCCHHHHHHHHHh
Q 019335 154 EQL---ILKDGFRAVRFNPYLWPSGQQMT--------NEVGKAMFSKAGELGVPVGFMCMKGL----NLHISEIEELCTE 218 (342)
Q Consensus 154 er~---~~~~g~~Gvk~~~~~~~~g~~l~--------~~~~~~~~~~a~e~~lpv~iH~~~~~----~~~~~~l~~l~~~ 218 (342)
++. ++..|...+.+++... +.... -+.++.+.+.|+++|+.+.++..... -..+..+..+++.
T Consensus 93 ~~~i~~a~~lGa~~i~~~~~~~--~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~iE~~~~~~~~~~~t~~~~~~l~~~ 170 (275)
T PRK09856 93 KLAMDMAKEMNAGYTLISAAHA--GYLTPPNVIWGRLAENLSELCEYAENIGMDLILEPLTPYESNVVCNANDVLHALAL 170 (275)
T ss_pred HHHHHHHHHhCCCEEEEcCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEecCCCCcccccCCHHHHHHHHHH
Confidence 333 3578999888876421 11111 13578889999999999999974211 1236788888887
Q ss_pred C--CCCcEEec
Q 019335 219 F--PSTTVLLD 227 (342)
Q Consensus 219 ~--P~lk~vl~ 227 (342)
. |+++++++
T Consensus 171 ~~~~~v~~~~D 181 (275)
T PRK09856 171 VPSPRLFSMVD 181 (275)
T ss_pred cCCCcceeEEe
Confidence 6 56776654
No 176
>COG0402 SsnA Cytosine deaminase and related metal-dependent hydrolases [Nucleotide transport and metabolism / General function prediction only]
Probab=77.40 E-value=61 Score=31.52 Aligned_cols=127 Identities=16% Similarity=0.075 Sum_probs=68.7
Q ss_pred HHHHhHHCCCceEEEeCCCCCccchHHHHHHHHhCCCcEEEE-EEcC---CCC---cch----HHHHHHHHHhcCCceEE
Q 019335 97 LLQCMEEASVDGALIVQPINHKFDHSLVTSVLKKYPSKFVGC-CLAN---PAE---DVI----GIKQLEQLILKDGFRAV 165 (342)
Q Consensus 97 ll~~md~~GI~~~v~~~~~~~~~~N~~~~~~~~~~p~r~~g~-~~i~---p~~---~~~----~~~eler~~~~~g~~Gv 165 (342)
.+.+|-++|++....... .....-+.+.+.+++..-|.+.. ...+ |.. ..+ ..+.++++ ...|...+
T Consensus 108 ~~~e~l~~G~t~~~~~~~-~~~~~~~~~~~a~~~~g~r~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 185 (421)
T COG0402 108 ALLEMLRNGTTTARTHVD-VVAESADAAFEAALEVGLRAVLGPVLQDVAFPDPGAETDEELEETEELLREA-HGLGRDVV 185 (421)
T ss_pred HHHHHHhcCccccccccc-hhhhhHHHHHHHHHHhCCeeEeeeccccCCCCcccccchHHHHHHHHHHHHH-hcCCCeeE
Confidence 355788899998443321 11111233555666665555543 2222 221 111 23444444 45553333
Q ss_pred EecCCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEEeccCCCCCHHHHHHHH-----------HhCCC--CcEEecccCCC
Q 019335 166 RFNPYLWPSGQQMTNEVGKAMFSKAGELGVPVGFMCMKGLNLHISEIEELC-----------TEFPS--TTVLLDHLAFC 232 (342)
Q Consensus 166 k~~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH~~~~~~~~~~~l~~l~-----------~~~P~--lk~vl~H~G~~ 232 (342)
.+.|.. ......+.++.+-+.++++|++|.+|+.+. ..++.... .++.- -+.++.|+-+.
T Consensus 186 ~~~p~~---~~~~~~~~~~~~~~l~~~~~~~v~iH~~E~----~~e~~~~~~~~g~~~~~~~~~~g~l~~~~~~~H~~~~ 258 (421)
T COG0402 186 GLAPHF---PYTVSPELLESLDELARKYGLPVHIHLAET----LDEVERVLEPYGARPVERLDLLGLLGSHTLLAHCVHL 258 (421)
T ss_pred EEecCC---CCCCCHHHHHHHHHHHhcCCCceEEEecCc----HHHHHHHHhhcCCCHHHHHHHcCCCCCCeEEEEeccC
Confidence 333431 234566778888888889999999999854 22222222 24442 34788899873
No 177
>TIGR03314 Se_ssnA putative selenium metabolism protein SsnA. Members of this protein family are found exclusively in genomes that contain putative set of labile selenium-dependent enzyme accessory proteins as well as homologs of a labile selenium-dependent purine hydroxylase. A mutant in this gene in Escherichia coli had improved stationary phase viability. The function is unknown.
Probab=76.49 E-value=80 Score=30.94 Aligned_cols=126 Identities=8% Similarity=0.008 Sum_probs=66.0
Q ss_pred HhHHCCCceEEEeCCCCC--ccchHHHHHHHHhCCCcE-EEEEEcCCCC---cchHHHHHHHHHhc-----CCceEEEec
Q 019335 100 CMEEASVDGALIVQPINH--KFDHSLVTSVLKKYPSKF-VGCCLANPAE---DVIGIKQLEQLILK-----DGFRAVRFN 168 (342)
Q Consensus 100 ~md~~GI~~~v~~~~~~~--~~~N~~~~~~~~~~p~r~-~g~~~i~p~~---~~~~~~eler~~~~-----~g~~Gvk~~ 168 (342)
+|-+.|++..+-+..... ....+.+.+.+++.+=|. ++....++.. ..+.+++.++.++. .+..-+.+.
T Consensus 115 e~l~~GtTt~~d~~~~~~~~~~~~~~~~~a~~~~GiR~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~ 194 (441)
T TIGR03314 115 DAIKSGCTTVIDHHASPNAITGSLSTIRKAADEAGLRTMLCYETSDRDGGKEMQEGVEENIAFIKKSSGKEPYLVEAHIG 194 (441)
T ss_pred HHHHcCCeEEEecccccccccchHHHHHHHHHHhCCeEEEeeeeecCCCcccHHHHHHHHHHHHHHhccCCCCceEEEEe
Confidence 566789987775421111 111244556666655343 3334444321 12223333332221 122222233
Q ss_pred CCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEEeccCCCCCHHHHH-----------HHHHhCC--CCcEEecccCCC
Q 019335 169 PYLWPSGQQMTNEVGKAMFSKAGELGVPVGFMCMKGLNLHISEIE-----------ELCTEFP--STTVLLDHLAFC 232 (342)
Q Consensus 169 ~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH~~~~~~~~~~~l~-----------~l~~~~P--~lk~vl~H~G~~ 232 (342)
+.. ....+++.+..+.+.|+++|+++.+|+.++. .+.. +.+.++- +-++++.|+.+.
T Consensus 195 p~~---~~t~s~~~l~~~~~lA~~~~~~i~~H~~E~~----~e~~~~~~~~g~~~~~~l~~~G~l~~~~~~~H~~~~ 264 (441)
T TIGR03314 195 AHA---PFTVSDAGLEMCREAVQATGRGFHIHVAEDI----YDVEDSHHKYGKDIVERLADFGLLGSKTLAAHCIYL 264 (441)
T ss_pred cCC---CCCCCHHHHHHHHHHHHHcCCCEEEEcCCCH----HHHHHHHHHcCCCHHHHHHHCCCCCCCeEEEEEecC
Confidence 321 2345678899999999999999999998642 2222 2223321 346789999874
No 178
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=76.41 E-value=54 Score=29.32 Aligned_cols=132 Identities=18% Similarity=0.155 Sum_probs=69.7
Q ss_pred HHHHHHhHHCCCceEEEeCCCCC------ccchHHHHHHHHhCCC-cEEEEEEcCCCCcchHHHHHHHHHhcCCceEEEe
Q 019335 95 DFLLQCMEEASVDGALIVQPINH------KFDHSLVTSVLKKYPS-KFVGCCLANPAEDVIGIKQLEQLILKDGFRAVRF 167 (342)
Q Consensus 95 ~~ll~~md~~GI~~~v~~~~~~~------~~~N~~~~~~~~~~p~-r~~g~~~i~p~~~~~~~~eler~~~~~g~~Gvk~ 167 (342)
-.+++.+++.||+..-+..+... ....+.+..+.+..++ ++..+ +... .+.+++. .+.|+..|++
T Consensus 22 ~~i~~~L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~~~~~~~~l--~~~~-----~~~i~~a-~~~g~~~i~i 93 (265)
T cd03174 22 LEIAEALDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAIRKLVPNVKLQAL--VRNR-----EKGIERA-LEAGVDEVRI 93 (265)
T ss_pred HHHHHHHHHcCCCEEEeccCcCccccccCCCHHHHHHHHHhccCCcEEEEE--ccCc-----hhhHHHH-HhCCcCEEEE
Confidence 44566888999998877654322 2223344444444432 33332 2221 3456666 4668888886
Q ss_pred cCCCCC------CCCcC--CcHHHHHHHHHHhhhCCeEEEEeccCCC--CCHHHHHH---HHHhCC-CCcEEecccCCCC
Q 019335 168 NPYLWP------SGQQM--TNEVGKAMFSKAGELGVPVGFMCMKGLN--LHISEIEE---LCTEFP-STTVLLDHLAFCK 233 (342)
Q Consensus 168 ~~~~~~------~g~~l--~~~~~~~~~~~a~e~~lpv~iH~~~~~~--~~~~~l~~---l~~~~P-~lk~vl~H~G~~~ 233 (342)
...... .+... .-....+..+++.++|+.+.+....... ..+..+.+ .+.++. +.-.+.+..|...
T Consensus 94 ~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~i~l~Dt~G~~~ 173 (265)
T cd03174 94 FDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKALEEAGADEISLKDTVGLAT 173 (265)
T ss_pred EEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEechhcCCcC
Confidence 643210 00111 2245677888899999999888744333 44444444 344443 2222345566544
Q ss_pred C
Q 019335 234 P 234 (342)
Q Consensus 234 p 234 (342)
|
T Consensus 174 P 174 (265)
T cd03174 174 P 174 (265)
T ss_pred H
Confidence 3
No 179
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=76.38 E-value=49 Score=32.88 Aligned_cols=107 Identities=16% Similarity=0.205 Sum_probs=62.0
Q ss_pred hHHHHHHhHHCCCceEEEeCCCCCccchHHHHHHHHhCCCcEEEEE--EcCCCCcchHHHHHHHHHhcCCceEEEecCCC
Q 019335 94 VDFLLQCMEEASVDGALIVQPINHKFDHSLVTSVLKKYPSKFVGCC--LANPAEDVIGIKQLEQLILKDGFRAVRFNPYL 171 (342)
Q Consensus 94 ~~~ll~~md~~GI~~~v~~~~~~~~~~N~~~~~~~~~~p~r~~g~~--~i~p~~~~~~~~eler~~~~~g~~Gvk~~~~~ 171 (342)
.+..++...++||+..-++-+......-....+++++....+.+.. ...|....+...++-+.+.+.|+..|.+--..
T Consensus 97 v~~fv~~A~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~i~~t~~p~~t~e~~~~~a~~l~~~Gad~I~i~Dt~ 176 (467)
T PRK14041 97 VELFVKKVAEYGLDIIRIFDALNDIRNLEKSIEVAKKHGAHVQGAISYTVSPVHTLEYYLEFARELVDMGVDSICIKDMA 176 (467)
T ss_pred hHHHHHHHHHCCcCEEEEEEeCCHHHHHHHHHHHHHHCCCEEEEEEEeccCCCCCHHHHHHHHHHHHHcCCCEEEECCcc
Confidence 3445677788999987776542221112345667777654444332 24565543344444444467898888776432
Q ss_pred CCCCCcCCcHHHHHHHHHHhh-hCCeEEEEeccC
Q 019335 172 WPSGQQMTNEVGKAMFSKAGE-LGVPVGFMCMKG 204 (342)
Q Consensus 172 ~~~g~~l~~~~~~~~~~~a~e-~~lpv~iH~~~~ 204 (342)
|. +.=.+...+++.+.+ .++||.+|+++.
T Consensus 177 ---G~-l~P~~v~~Lv~~lk~~~~vpI~~H~Hnt 206 (467)
T PRK14041 177 ---GL-LTPKRAYELVKALKKKFGVPVEVHSHCT 206 (467)
T ss_pred ---CC-cCHHHHHHHHHHHHHhcCCceEEEecCC
Confidence 22 222355666666654 689999999854
No 180
>TIGR03586 PseI pseudaminic acid synthase.
Probab=76.36 E-value=27 Score=32.96 Aligned_cols=76 Identities=17% Similarity=0.256 Sum_probs=48.6
Q ss_pred CCCCcchHHHHHHHHHhcCCceEEEecCCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEEeccCCCCCHHHHHH---HHHh
Q 019335 142 NPAEDVIGIKQLEQLILKDGFRAVRFNPYLWPSGQQMTNEVGKAMFSKAGELGVPVGFMCMKGLNLHISEIEE---LCTE 218 (342)
Q Consensus 142 ~p~~~~~~~~eler~~~~~g~~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH~~~~~~~~~~~l~~---l~~~ 218 (342)
.|.+.+ .++.+ .+.|+..+|+.... ++ ..++++.+.+.|.||.+=+|- ..+.++.. .+.+
T Consensus 96 tpfd~~-svd~l----~~~~v~~~KI~S~~------~~---n~~LL~~va~~gkPvilstG~---~t~~Ei~~Av~~i~~ 158 (327)
T TIGR03586 96 SPFDET-AVDFL----ESLDVPAYKIASFE------IT---DLPLIRYVAKTGKPIIMSTGI---ATLEEIQEAVEACRE 158 (327)
T ss_pred ccCCHH-HHHHH----HHcCCCEEEECCcc------cc---CHHHHHHHHhcCCcEEEECCC---CCHHHHHHHHHHHHH
Confidence 454433 44444 34577788876532 22 278999999999999987763 35555544 4444
Q ss_pred CCCCcEEecccCCCCC
Q 019335 219 FPSTTVLLDHLAFCKP 234 (342)
Q Consensus 219 ~P~lk~vl~H~G~~~p 234 (342)
.-+-++++.||-...|
T Consensus 159 ~g~~~i~LlhC~s~YP 174 (327)
T TIGR03586 159 AGCKDLVLLKCTSSYP 174 (327)
T ss_pred CCCCcEEEEecCCCCC
Confidence 3334689999877655
No 181
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=76.27 E-value=60 Score=29.34 Aligned_cols=136 Identities=14% Similarity=0.024 Sum_probs=79.2
Q ss_pred CChHHHHHHhHHCCCceEEEeCCCC------Cc---cchHHHHHHHHhCCCcEEEEEE-----cCCCCc-----chHHHH
Q 019335 92 GHVDFLLQCMEEASVDGALIVQPIN------HK---FDHSLVTSVLKKYPSKFVGCCL-----ANPAED-----VIGIKQ 152 (342)
Q Consensus 92 ~~~~~ll~~md~~GI~~~v~~~~~~------~~---~~N~~~~~~~~~~p~r~~g~~~-----i~p~~~-----~~~~~e 152 (342)
.+.++.++.+.++|.++.=+..... .. .+-..+.+.++++.=.+.+++. .+...+ ++.++.
T Consensus 16 ~~~~e~~~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gl~i~~~~~~~~~~~~~~~~d~~~r~~~~~~ 95 (284)
T PRK13210 16 LSWEERLVFAKELGFDFVEMSVDESDERLARLDWSKEERLSLVKAIYETGVRIPSMCLSGHRRFPFGSRDPATRERALEI 95 (284)
T ss_pred CCHHHHHHHHHHcCCCeEEEecCCcccccccccCCHHHHHHHHHHHHHcCCCceEEecccccCcCCCCCCHHHHHHHHHH
Confidence 4789999999999999886642211 01 1124456666666423433321 122111 224455
Q ss_pred HHHH---HhcCCceEEEecCCCCCCCCc------CCcHHHHHHHHHHhhhCCeEEEEeccCC-CCCHHHHHHHHHhC--C
Q 019335 153 LEQL---ILKDGFRAVRFNPYLWPSGQQ------MTNEVGKAMFSKAGELGVPVGFMCMKGL-NLHISEIEELCTEF--P 220 (342)
Q Consensus 153 ler~---~~~~g~~Gvk~~~~~~~~g~~------l~~~~~~~~~~~a~e~~lpv~iH~~~~~-~~~~~~l~~l~~~~--P 220 (342)
++++ ++..|...|++.......... ..-+.+.++.+.|+++|+.+.++..... -.....+..+++.. |
T Consensus 96 ~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~lE~~~~~~~~~~~~~~~l~~~v~~~ 175 (284)
T PRK13210 96 MKKAIRLAQDLGIRTIQLAGYDVYYEEKSEETRQRFIEGLAWAVEQAAAAQVMLAVEIMDTPFMNSISKWKKWDKEIDSP 175 (284)
T ss_pred HHHHHHHHHHhCCCEEEECCcccccccccHHHHHHHHHHHHHHHHHHHHhCCEEEEEecCccccCCHHHHHHHHHHcCCC
Confidence 5554 357899888875321000000 0113578889999999999999986321 12345677777754 7
Q ss_pred CCcEEec
Q 019335 221 STTVLLD 227 (342)
Q Consensus 221 ~lk~vl~ 227 (342)
.++++++
T Consensus 176 ~~~~~~D 182 (284)
T PRK13210 176 WLTVYPD 182 (284)
T ss_pred ceeEEec
Confidence 7887765
No 182
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=76.22 E-value=38 Score=28.63 Aligned_cols=70 Identities=19% Similarity=0.145 Sum_probs=43.6
Q ss_pred hcCCceEEEecCC--CCCCCCc------CCcHHHHHHHHHHhhhCCeEEEEeccCCC----CCHHHHHHHHHhCCC--Cc
Q 019335 158 LKDGFRAVRFNPY--LWPSGQQ------MTNEVGKAMFSKAGELGVPVGFMCMKGLN----LHISEIEELCTEFPS--TT 223 (342)
Q Consensus 158 ~~~g~~Gvk~~~~--~~~~g~~------l~~~~~~~~~~~a~e~~lpv~iH~~~~~~----~~~~~l~~l~~~~P~--lk 223 (342)
+..|.+-+.+++. ....... .--+.+..+.+.|+++|+.+.++...... ..+.++..++++.+. ++
T Consensus 81 ~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 160 (213)
T PF01261_consen 81 KRLGAKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEYGVRIALENHPGPFSETPFSVEEIYRLLEEVDSPNVG 160 (213)
T ss_dssp HHHTBSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTSEEEEE-SSSSSSSEESSHHHHHHHHHHHTTTTEE
T ss_pred HHhCCCceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhhcceEEEecccCccccchhhHHHHHHHHhhcCCCcce
Confidence 5678888888755 1110111 11236778888888999999888764321 123788888888764 77
Q ss_pred EEec
Q 019335 224 VLLD 227 (342)
Q Consensus 224 ~vl~ 227 (342)
++++
T Consensus 161 i~~D 164 (213)
T PF01261_consen 161 ICFD 164 (213)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 6654
No 183
>PRK06361 hypothetical protein; Provisional
Probab=75.74 E-value=53 Score=28.49 Aligned_cols=134 Identities=16% Similarity=0.095 Sum_probs=76.3
Q ss_pred HHHHHHHHhhhCCeE-EEEeccCC-CCCHHHHHHHHHhCCCCcEEecccCCCCCCCCchhhHhHHHHhcccCCCcEEEec
Q 019335 183 GKAMFSKAGELGVPV-GFMCMKGL-NLHISEIEELCTEFPSTTVLLDHLAFCKPPSNDEESLAFSNLLKLSRFPQVYVKF 260 (342)
Q Consensus 183 ~~~~~~~a~e~~lpv-~iH~~~~~-~~~~~~l~~l~~~~P~lk~vl~H~G~~~p~~~~~~~~~~~~~~~l~~~~Nvy~~~ 260 (342)
...+.+.+.+++..+ .+|..... +........ +-+.+.. -|++|.+... ..+.+.+...++|+++
T Consensus 74 ~~~~~~~~~~~~~~~~svH~~~~~~~~~~~~~~~-a~~~~~~-dvlaHpd~~~-----------~~~~~~~~~~~~~lEi 140 (212)
T PRK06361 74 IPKLAKKARDLGAEIVVVHGETIVEPVEEGTNLA-AIECEDV-DILAHPGLIT-----------EEEAELAAENGVFLEI 140 (212)
T ss_pred hchHHHHHHHCCCEEEEECCCCcchhhhhhhHHH-HHhCCCC-cEecCcchhh-----------HHHHHHHHHcCeEEEE
Confidence 445556666765554 56622100 000111122 3344544 4788887521 1233444444699998
Q ss_pred CcccccccCCCCCCCchhHHHHHHHhcCCCcEEEccCCCCCCCCCChHhHHHHHHHHHhcCCCCHHHHHHHHhHHHHHhc
Q 019335 261 SALFRVSRMPFPYQDLSSPLSQVVSSFGANRVMWGSDFPYVVPECGYKGGREAASLIANEVPLSPSELEWIMGGTIMQLF 340 (342)
Q Consensus 261 S~~~~~~~~~~~~~~~~~~l~~~i~~~G~dRilfGSD~P~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~I~~~NA~rl~ 340 (342)
..... . ....+.+-++.+.+|.. ++.|||.=.. + .+. ..+.+..+.+..++++++...++.+|-.+++
T Consensus 141 n~~~~---~----~~~~~~~l~~a~~~gi~-vv~~SDaH~~--~-d~~-~~~~~~~i~~~~gl~~~~v~~~~~~~~~~~~ 208 (212)
T PRK06361 141 TARKG---H----SLTNGHVARIAREAGAP-LVINTDTHAP--S-DLI-TYEFARKVALGAGLTEKELEEALENNPKLLL 208 (212)
T ss_pred ECCCC---c----ccchHHHHHHHHHhCCc-EEEECCCCCH--H-HHH-HHHHHHHHHcCCCCCHHHHHHHHHHhHHHHH
Confidence 74211 1 11223455566677766 9999997532 1 232 2445556667899999999999999999887
Q ss_pred C
Q 019335 341 Q 341 (342)
Q Consensus 341 ~ 341 (342)
+
T Consensus 209 ~ 209 (212)
T PRK06361 209 K 209 (212)
T ss_pred H
Confidence 4
No 184
>PRK01060 endonuclease IV; Provisional
Probab=74.99 E-value=65 Score=29.15 Aligned_cols=134 Identities=16% Similarity=0.127 Sum_probs=72.5
Q ss_pred ChHHHHHHhHHCCCceEEEeC--CCCC-c-c-c---hHHHHHHHHhCCCc---EEEEE--EcCCCCcc-----hHHHHHH
Q 019335 93 HVDFLLQCMEEASVDGALIVQ--PINH-K-F-D---HSLVTSVLKKYPSK---FVGCC--LANPAEDV-----IGIKQLE 154 (342)
Q Consensus 93 ~~~~ll~~md~~GI~~~v~~~--~~~~-~-~-~---N~~~~~~~~~~p~r---~~g~~--~i~p~~~~-----~~~~ele 154 (342)
+.++.++.+.+.|.+..=+.. |..+ . . . -+.+.+.++++.=+ +...+ .+++..++ .+++.++
T Consensus 13 ~~~~~l~~~~~~G~d~vEl~~~~p~~~~~~~~~~~~~~~lk~~~~~~gl~~~~~~~h~~~~~nl~~~d~~~r~~s~~~~~ 92 (281)
T PRK01060 13 GLEGAVAEAAEIGANAFMIFTGNPQQWKRKPLEELNIEAFKAACEKYGISPEDILVHAPYLINLGNPNKEILEKSRDFLI 92 (281)
T ss_pred CHHHHHHHHHHcCCCEEEEECCCCCCCcCCCCCHHHHHHHHHHHHHcCCCCCceEEecceEecCCCCCHHHHHHHHHHHH
Confidence 478999999999999985543 2111 1 1 1 12345556566423 22211 13333322 2344454
Q ss_pred HH---HhcCCceEEEecCCCCCCCCcCCc---HHHHHHHHHH--hhhCCeEEEEeccCC----CCCHHHHHHHHHhCC--
Q 019335 155 QL---ILKDGFRAVRFNPYLWPSGQQMTN---EVGKAMFSKA--GELGVPVGFMCMKGL----NLHISEIEELCTEFP-- 220 (342)
Q Consensus 155 r~---~~~~g~~Gvk~~~~~~~~g~~l~~---~~~~~~~~~a--~e~~lpv~iH~~~~~----~~~~~~l~~l~~~~P-- 220 (342)
+. +++.|...|.+++.... .....+ +.+.+.++.+ ++.|+.+.+....+. ...+.++.+++++.+
T Consensus 93 ~~i~~A~~lga~~vv~h~G~~~-~~~~~~~~~~~~~e~l~~l~~~~~gv~l~iEn~~~~~~~~~~~~~~~~~l~~~v~~~ 171 (281)
T PRK01060 93 QEIERCAALGAKLLVFHPGSHL-GDIDEEDCLARIAESLNEALDKTQGVTIVLENTAGQGSELGRRFEELARIIDGVEDK 171 (281)
T ss_pred HHHHHHHHcCCCEEEEcCCcCC-CCCcHHHHHHHHHHHHHHHHhcCCCCEEEEecCCCCCCcccCCHHHHHHHHHhcCCc
Confidence 43 35789999998875311 111111 2223333333 346888888765321 134678888888775
Q ss_pred C-CcEEec
Q 019335 221 S-TTVLLD 227 (342)
Q Consensus 221 ~-lk~vl~ 227 (342)
. +.++++
T Consensus 172 ~~vg~~lD 179 (281)
T PRK01060 172 SRVGVCLD 179 (281)
T ss_pred ccEEEEEe
Confidence 3 788874
No 185
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=73.51 E-value=71 Score=28.92 Aligned_cols=136 Identities=19% Similarity=0.180 Sum_probs=79.8
Q ss_pred CChHHHHHHhHHCCCceEEE-eCCC-CCc------cchHHHHHHHHhCCC-cEEEEEE--cCCCCc-----chHHHHHHH
Q 019335 92 GHVDFLLQCMEEASVDGALI-VQPI-NHK------FDHSLVTSVLKKYPS-KFVGCCL--ANPAED-----VIGIKQLEQ 155 (342)
Q Consensus 92 ~~~~~ll~~md~~GI~~~v~-~~~~-~~~------~~N~~~~~~~~~~p~-r~~g~~~--i~p~~~-----~~~~~eler 155 (342)
.+.++.++.+.+.|.+..=+ +... .+. .+-+.+.+.++++++ .+...+. +++..+ +.+++.+++
T Consensus 10 ~~l~~~l~~a~~~G~d~vEl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~ 89 (279)
T cd00019 10 FGLENALKRAKEIGFDTVAMFLGNPRSWLSRPLKKERAEKFKAIAEEGPSICLSVHAPYLINLASPDKEKREKSIERLKD 89 (279)
T ss_pred ccHHHHHHHHHHcCCCEEEEEcCCCCccCCCCCCHHHHHHHHHHHHHcCCCcEEEEcCceeccCCCCHHHHHHHHHHHHH
Confidence 57889999999999887632 2211 111 122456666677733 3332221 222222 224445555
Q ss_pred HH---hcCCceEEEecCCCCCCCCc-----CCcHHHHHHHHHHhhhCCeEEEEeccCC----CCCHHHHHHHHHh---CC
Q 019335 156 LI---LKDGFRAVRFNPYLWPSGQQ-----MTNEVGKAMFSKAGELGVPVGFMCMKGL----NLHISEIEELCTE---FP 220 (342)
Q Consensus 156 ~~---~~~g~~Gvk~~~~~~~~g~~-----l~~~~~~~~~~~a~e~~lpv~iH~~~~~----~~~~~~l~~l~~~---~P 220 (342)
++ ++.|...+.+++........ .--+.+.++.+.|+++|+.+.++..... ...+.++.++++. .|
T Consensus 90 ~i~~A~~lG~~~v~~~~g~~~~~~~~~~~~~~~~~l~~l~~~a~~~gi~l~lEn~~~~~~~~~~t~~~~~~li~~v~~~~ 169 (279)
T cd00019 90 EIERCEELGIRLLVFHPGSYLGQSKEEGLKRVIEALNELIDKAETKGVVIALETMAGQGNEIGSSFEELKEIIDLIKEKP 169 (279)
T ss_pred HHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCC
Confidence 43 46899888887653211000 1124667777888889999999875332 2356778888887 57
Q ss_pred CCcEEec
Q 019335 221 STTVLLD 227 (342)
Q Consensus 221 ~lk~vl~ 227 (342)
+++++++
T Consensus 170 ~~g~~lD 176 (279)
T cd00019 170 RVGVCID 176 (279)
T ss_pred CeEEEEE
Confidence 8888865
No 186
>PF02548 Pantoate_transf: Ketopantoate hydroxymethyltransferase; InterPro: IPR003700 The panB gene from Escherichia coli encodes the first enzyme of the pantothenate biosynthesis pathway, ketopantoate hydroxymethyltransferase (KPHMT) 2.1.2.11 from EC. Fungal ketopantoate hydroxymethyltransferase is essential for the biosynthesis of coenzyme A, while the pathway intermediate 4'-phosphopantetheine is required for penicillin production [].; GO: 0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity, 0015940 pantothenate biosynthetic process; PDB: 3VAV_G 1M3U_A 3EZ4_J 1O68_C 1O66_A 1OY0_D.
Probab=73.36 E-value=52 Score=29.92 Aligned_cols=94 Identities=18% Similarity=0.152 Sum_probs=55.8
Q ss_pred HHhHHCCCceEEEeCCC---CCcc------chHHH----HHHHHhCCCcEEEEEEcCC----CCcchHHHHHHHHHhcCC
Q 019335 99 QCMEEASVDGALIVQPI---NHKF------DHSLV----TSVLKKYPSKFVGCCLANP----AEDVIGIKQLEQLILKDG 161 (342)
Q Consensus 99 ~~md~~GI~~~v~~~~~---~~~~------~N~~~----~~~~~~~p~r~~g~~~i~p----~~~~~~~~eler~~~~~g 161 (342)
...+++|||-.++-.+. ..+. .-+.+ ....+--|+.|+ ++-++- ..++++++.-.|++++.|
T Consensus 30 ~~~d~agvD~iLVGDSlgmv~~G~~sT~~vtld~mi~h~~aV~Rga~~~~v-v~DmPf~sy~~s~e~av~nA~rl~ke~G 108 (261)
T PF02548_consen 30 RIADEAGVDIILVGDSLGMVVLGYDSTLPVTLDEMIYHTKAVRRGAPNAFV-VADMPFGSYQASPEQAVRNAGRLMKEAG 108 (261)
T ss_dssp HHHHHTT-SEEEE-TTHHHHTT--SSSTT--HHHHHHHHHHHHHH-TSSEE-EEE--TTSSTSSHHHHHHHHHHHHHTTT
T ss_pred HHHHHcCCCEEEeCCcHHHheeCCCCCcCcCHHHHHHHHHHHHhcCCCceE-EecCCcccccCCHHHHHHHHHHHHHhcC
Confidence 35678999988765421 1121 12222 333344666665 333321 235567888888888899
Q ss_pred ceEEEecCCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEEecc
Q 019335 162 FRAVRFNPYLWPSGQQMTNEVGKAMFSKAGELGVPVGFMCMK 203 (342)
Q Consensus 162 ~~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH~~~ 203 (342)
.-+||+... ...-++.+.+.+.|+||.=|.|-
T Consensus 109 adaVKlEGg----------~~~~~~i~~l~~~GIPV~gHiGL 140 (261)
T PF02548_consen 109 ADAVKLEGG----------AEIAETIKALVDAGIPVMGHIGL 140 (261)
T ss_dssp -SEEEEEBS----------GGGHHHHHHHHHTT--EEEEEES
T ss_pred CCEEEeccc----------hhHHHHHHHHHHCCCcEEEEecC
Confidence 999998853 24568999999999999999973
No 187
>PF07969 Amidohydro_3: Amidohydrolase family; InterPro: IPR013108 Amidohydrolases are a diverse superfamily of enzymes which catalyse the hydrolysis of amide or amine bonds in a large number of different substrates including urea, cytosine, AMP, formylmethanofuran, etc [, ]. Also included in this superfamily are the phopshotriesterase enzymes, which hydrolyse P-O bonds. Members participate in a large number of processes including nucleotide metabolism, detoxification and neuronal development. They use a variety of divalent metal cofactors for catalysis: for example adenosine deaminase binds a single zinc ion, phopsphotriesterase binds two, while urease binds nickel. It has been postulated that since some of these proteins, such as those some of those involved in neuronal devlopment, appear to have lost their metal-binding centres, their function may simply be to bind, but not hydrolyse, their target molecules. This entry represents a subset of amidohydrolase domains that participate in different functions including cytosine degradation, atrazine degradation and other metabolic processes. The structure of the domain from Escherichia coli has been studied, and like other amidohydrolases it forms a classical alpha-beta TIM-barrel fold []. The active site is located in the mouth of the enzyme barrel and contains a bound iron ion that coordinates a hydroxyl nucleophile. Substrate binding involves a significant conformational change that sequesters the reaction complex from solvent.; PDB: 4F0R_A 4F0S_A 1V4Y_A 1M7J_A 1RK5_A 1RJP_A 1RJR_A 1RJQ_A 1RK6_A 1V51_A ....
Probab=72.46 E-value=9.8 Score=36.49 Aligned_cols=51 Identities=16% Similarity=0.145 Sum_probs=30.4
Q ss_pred CcHHHHHHHHHHhhhCCeEEEEeccCCCCCHHHHHHHHHhCCCCcEEecccCCC
Q 019335 179 TNEVGKAMFSKAGELGVPVGFMCMKGLNLHISEIEELCTEFPSTTVLLDHLAFC 232 (342)
Q Consensus 179 ~~~~~~~~~~~a~e~~lpv~iH~~~~~~~~~~~l~~l~~~~P~lk~vl~H~G~~ 232 (342)
+.+.+..+.+.+.+.|+.|.+|+... ..+..+.+..++.-.- -.+.|+...
T Consensus 223 ~~~~l~~~v~~a~~~g~~v~vHa~gd--~a~~~~l~a~~~~~~~-~~i~h~~~~ 273 (404)
T PF07969_consen 223 DPEELEELVRAAREAGLQVAVHAIGD--RAIDEALDAIEAARAR-GRIEHAELI 273 (404)
T ss_dssp SHHHHHHHHHHHHHCT-EEEEEEESH--HHHHHHHHHHHHHTCC-HEEEEHCBC
T ss_pred cchhHHHHHHHHHhcCCeeEEEEcCC--chHHhHHHHHHhhccc-ceeeccccC
Confidence 34568999999999999999998421 1223333333332211 167788763
No 188
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=71.93 E-value=39 Score=31.79 Aligned_cols=94 Identities=11% Similarity=0.030 Sum_probs=57.2
Q ss_pred HHhHHCCCceEEEeCCC---CCcc------chHHHH---HH-HHhCCCcEEEEEEcCCC----CcchHHHHHHHHHhcCC
Q 019335 99 QCMEEASVDGALIVQPI---NHKF------DHSLVT---SV-LKKYPSKFVGCCLANPA----EDVIGIKQLEQLILKDG 161 (342)
Q Consensus 99 ~~md~~GI~~~v~~~~~---~~~~------~N~~~~---~~-~~~~p~r~~g~~~i~p~----~~~~~~~eler~~~~~g 161 (342)
+.++++||+...+-... ..+. .-+.++ +. ++.-+.-|+ ++-++-. .++++++...|++++.|
T Consensus 49 ~i~d~aGvD~ILVGDSlgmv~lG~~~T~~Vtld~mi~H~~aV~Rga~~a~v-VaDmPfgSY~~s~e~av~nA~rl~~eaG 127 (332)
T PLN02424 49 VHVDSAGIDVCLVGDSAAMVVHGHDTTLPITLDEMLVHCRAVARGANRPLL-VGDLPFGSYESSTDQAVESAVRMLKEGG 127 (332)
T ss_pred HHHHHcCCCEEEECCcHHHHhcCCCCCCCcCHHHHHHHHHHHhccCCCCEE-EeCCCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 35678999987764321 1121 123332 22 233343332 2222211 24567788888888899
Q ss_pred ceEEEecCCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEEec
Q 019335 162 FRAVRFNPYLWPSGQQMTNEVGKAMFSKAGELGVPVGFMCM 202 (342)
Q Consensus 162 ~~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH~~ 202 (342)
+.|||+.... ....+..+.+.+.|+||+-|.|
T Consensus 128 a~aVKlEGg~---------~~~~~~I~~l~~~GIPV~gHiG 159 (332)
T PLN02424 128 MDAVKLEGGS---------PSRVTAAKAIVEAGIAVMGHVG 159 (332)
T ss_pred CcEEEECCCc---------HHHHHHHHHHHHcCCCEEEeec
Confidence 9999988531 2345778888899999999987
No 189
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=71.74 E-value=81 Score=28.80 Aligned_cols=51 Identities=20% Similarity=0.177 Sum_probs=23.2
Q ss_pred ChHHHHHHhHHCCCceEEEeCCCCCccchHHHHHHHHhCCCcEEEEEEcCCCCcc
Q 019335 93 HVDFLLQCMEEASVDGALIVQPINHKFDHSLVTSVLKKYPSKFVGCCLANPAEDV 147 (342)
Q Consensus 93 ~~~~ll~~md~~GI~~~v~~~~~~~~~~N~~~~~~~~~~p~r~~g~~~i~p~~~~ 147 (342)
..+..++...+.||++.++..-. ....+.+.+.+++|. +-.+..+.|..++
T Consensus 110 Gie~F~~~~~~~GvdGlivpDLP--~ee~~~~~~~~~~~g--i~~I~lvaPtt~~ 160 (265)
T COG0159 110 GIEKFLRRAKEAGVDGLLVPDLP--PEESDELLKAAEKHG--IDPIFLVAPTTPD 160 (265)
T ss_pred hHHHHHHHHHHcCCCEEEeCCCC--hHHHHHHHHHHHHcC--CcEEEEeCCCCCH
Confidence 34555556666666665554321 111233444555542 3333344555444
No 190
>TIGR01431 adm_rel adenosine deaminase-related growth factor. Members of this family have been described as secreted proteins with growth factor activity and regions of adenosine deaminase homology in insects, mollusks, and vertebrates.
Probab=71.71 E-value=1.1e+02 Score=30.47 Aligned_cols=188 Identities=10% Similarity=-0.046 Sum_probs=87.5
Q ss_pred HHHHHHhHHCCCceEEEe-CC-CCC---cc--ch--------HHHHHHHHhCCCcEEEEE--EcCCCC--cchHHHHHHH
Q 019335 95 DFLLQCMEEASVDGALIV-QP-INH---KF--DH--------SLVTSVLKKYPSKFVGCC--LANPAE--DVIGIKQLEQ 155 (342)
Q Consensus 95 ~~ll~~md~~GI~~~v~~-~~-~~~---~~--~N--------~~~~~~~~~~p~r~~g~~--~i~p~~--~~~~~~eler 155 (342)
-++++++.+.||.++=+- .+ ..+ +. .. +-+.+..+++|+ |+++- ....+. ++.+.+.++.
T Consensus 200 ~~~l~d~~~DgV~Y~ElR~~p~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~-fi~~rlI~~~~R~~~~~~~~~~~~~ 278 (479)
T TIGR01431 200 YRALEEFYADNVQYLELRSTLFILYELEGTSHDEEDSVRIYKEVTEKFMAEHPD-FIGSKLIYSPLRNKDKEELDNYIKV 278 (479)
T ss_pred HHHHHHHHHcCCEEEEEEecCchHhhcCCCCCCHHHHHHHHHHHHHHHHHhCCC-CeEEEEEEEccCCCCHHHHHHHHHH
Confidence 344666777888777553 22 111 11 11 112233345665 55432 222222 3334445555
Q ss_pred HHhc----C-CceEEEecCCCCCCCCcCCcHHHHHHHH-HHhhhCCeEEEEeccCCC---CCHHHHHHHHHhCCCCcEEe
Q 019335 156 LILK----D-GFRAVRFNPYLWPSGQQMTNEVGKAMFS-KAGELGVPVGFMCMKGLN---LHISEIEELCTEFPSTTVLL 226 (342)
Q Consensus 156 ~~~~----~-g~~Gvk~~~~~~~~g~~l~~~~~~~~~~-~a~e~~lpv~iH~~~~~~---~~~~~l~~l~~~~P~lk~vl 226 (342)
+.+- + .++|+.+..... .|.. -..+.+.+. .+++.|+|+.+|+|+... .....+.+.+ .. +.+ =|
T Consensus 279 a~~~k~~~p~~vvGfDL~G~E~-~g~p--l~~f~~~~~~~~~~~gl~~t~HAGE~~~~g~~~d~nl~dAI-lL-g~~-RI 352 (479)
T TIGR01431 279 AMELKEKYPDFVAGFDLVGQED-KGRS--LLDFIDALLGPSDKEKLPYFFHAGETNWQGTTVDENLIDAL-LL-NTT-RI 352 (479)
T ss_pred HHHHHhhCCCeEEEEeccCCCC-CCCC--HHHHHHHHHHHHHhCCCCEEEecCCcCCCCCCchhHHHHHH-Hc-CCc-cc
Confidence 5431 2 478888775320 1222 234556665 455599999999996531 1223344444 23 222 34
Q ss_pred cccCCCCCCCCchhhHhHHHHhcccCCCcEEEecCcccccccCCC-CCCCchhHHHHHHHhcCCCcEEEccCCCCCC
Q 019335 227 DHLAFCKPPSNDEESLAFSNLLKLSRFPQVYVKFSALFRVSRMPF-PYQDLSSPLSQVVSSFGANRVMWGSDFPYVV 302 (342)
Q Consensus 227 ~H~G~~~p~~~~~~~~~~~~~~~l~~~~Nvy~~~S~~~~~~~~~~-~~~~~~~~l~~~i~~~G~dRilfGSD~P~~~ 302 (342)
+|+-... .. ..++++.+..|+-++++..-..-.... .+. -.| +..+++. |. .|..+||-|..-
T Consensus 353 GHG~~l~---~~------P~l~~~vke~~I~lEvCP~SN~~l~~v~~~~-~HP-l~~lla~-Gv-pv~InSDDP~~~ 416 (479)
T TIGR01431 353 GHGFALV---KH------PLVLQMLKERNIAVEVNPISNQVLQLVADLR-NHP-CAYLFAD-NY-PMVISSDDPAFW 416 (479)
T ss_pred cCccccc---CC------HHHHHHHHHhCCeEEECccchhhhcccCCcc-cCh-HHHHHHC-CC-cEEEeCCCcccc
Confidence 5655421 10 123333333345555543311100000 011 123 5666665 55 678899988653
No 191
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=71.70 E-value=89 Score=31.07 Aligned_cols=105 Identities=14% Similarity=0.156 Sum_probs=62.2
Q ss_pred HHHHHHhHHCCCceEEEeCCCCCccch-HHHHHHHHhCCCcEEEE--EEcCCCCcchHHHHHHHHHhcCCceEEEecCCC
Q 019335 95 DFLLQCMEEASVDGALIVQPINHKFDH-SLVTSVLKKYPSKFVGC--CLANPAEDVIGIKQLEQLILKDGFRAVRFNPYL 171 (342)
Q Consensus 95 ~~ll~~md~~GI~~~v~~~~~~~~~~N-~~~~~~~~~~p~r~~g~--~~i~p~~~~~~~~eler~~~~~g~~Gvk~~~~~ 171 (342)
+..++...++||+..-++..-. ..+| ....+.+++......+. ...+|....+...++-+.+.+.|+..|.+--..
T Consensus 108 ~~fv~~a~~~Gidi~Rifd~ln-d~~n~~~ai~~ak~~G~~~~~~i~yt~sp~~t~~y~~~~a~~l~~~Gad~I~IkDta 186 (468)
T PRK12581 108 DKFISLSAQNGIDVFRIFDALN-DPRNIQQALRAVKKTGKEAQLCIAYTTSPVHTLNYYLSLVKELVEMGADSICIKDMA 186 (468)
T ss_pred HHHHHHHHHCCCCEEEEcccCC-CHHHHHHHHHHHHHcCCEEEEEEEEEeCCcCcHHHHHHHHHHHHHcCCCEEEECCCC
Confidence 4456677889999988876432 2233 45567777765433232 245775543344444443467899888876432
Q ss_pred CCCCCcCCcHHHHHHHHHHhh-hCCeEEEEeccC
Q 019335 172 WPSGQQMTNEVGKAMFSKAGE-LGVPVGFMCMKG 204 (342)
Q Consensus 172 ~~~g~~l~~~~~~~~~~~a~e-~~lpv~iH~~~~ 204 (342)
|. +.=.....+++.+.+ .++||.+|+++.
T Consensus 187 ---G~-l~P~~v~~Lv~alk~~~~~pi~~H~Hnt 216 (468)
T PRK12581 187 ---GI-LTPKAAKELVSGIKAMTNLPLIVHTHAT 216 (468)
T ss_pred ---CC-cCHHHHHHHHHHHHhccCCeEEEEeCCC
Confidence 22 222345566666555 579999999854
No 192
>COG0413 PanB Ketopantoate hydroxymethyltransferase [Coenzyme metabolism]
Probab=71.51 E-value=39 Score=30.62 Aligned_cols=94 Identities=19% Similarity=0.179 Sum_probs=60.6
Q ss_pred HHhHHCCCceEEEeCCC---CCcc------chHHH----HHHHHhCCCcEEEEEEcCCC----CcchHHHHHHHHHhcCC
Q 019335 99 QCMEEASVDGALIVQPI---NHKF------DHSLV----TSVLKKYPSKFVGCCLANPA----EDVIGIKQLEQLILKDG 161 (342)
Q Consensus 99 ~~md~~GI~~~v~~~~~---~~~~------~N~~~----~~~~~~~p~r~~g~~~i~p~----~~~~~~~eler~~~~~g 161 (342)
+.+|++||+-.++-.+. ..+. ..+.+ ...++.-|+-|+ ++-++-. .++++++.--|.+++-|
T Consensus 29 ~~~d~agvd~lLVGDSlgmvv~G~~sTl~Vsl~~mi~ht~aV~Rga~~~~v-v~DmPF~sy~~s~~~a~~nA~r~~ke~g 107 (268)
T COG0413 29 KLFDQAGVDVLLVGDSLGMVVLGYDSTLPVTLEDMIYHTKAVRRGAPNAFV-VADLPFGSYEVSPEQALKNAARLMKEAG 107 (268)
T ss_pred hhhhhcCCcEEEEeccHHHHHcCCCCcceecHHHHHHHHHHHHhcCCCeeE-EeCCCCcccCCCHHHHHHHHHHHHHHhC
Confidence 35678899887765421 1121 12222 344455666544 2222211 24457777777778889
Q ss_pred ceEEEecCCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEEecc
Q 019335 162 FRAVRFNPYLWPSGQQMTNEVGKAMFSKAGELGVPVGFMCMK 203 (342)
Q Consensus 162 ~~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH~~~ 203 (342)
..+||+... +.+.+..+++.+.|+||.-|.|-
T Consensus 108 A~aVKlEGG----------~~~~~~i~~L~~~gIPV~gHiGL 139 (268)
T COG0413 108 ADAVKLEGG----------EEMAETIKRLTERGIPVMGHIGL 139 (268)
T ss_pred CCEEEEcCC----------HHHHHHHHHHHHcCCceEEEecC
Confidence 999998742 56788999999999999999984
No 193
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=70.74 E-value=83 Score=28.56 Aligned_cols=114 Identities=16% Similarity=0.112 Sum_probs=54.8
Q ss_pred CChHHHHHHhHHCCCceEEEeCCCCCccchHHHHHHHHhCCCcEEEEEEcCCCCcchHHHHHHHHHhcCCceEE-EecCC
Q 019335 92 GHVDFLLQCMEEASVDGALIVQPINHKFDHSLVTSVLKKYPSKFVGCCLANPAEDVIGIKQLEQLILKDGFRAV-RFNPY 170 (342)
Q Consensus 92 ~~~~~ll~~md~~GI~~~v~~~~~~~~~~N~~~~~~~~~~p~r~~g~~~i~p~~~~~~~~eler~~~~~g~~Gv-k~~~~ 170 (342)
...+..++.+.++||++.++..- .. .+.+...+.++++. +..+..+.|..+++-++.+.+. ..||.-+ -....
T Consensus 104 ~G~e~f~~~~~~aGvdGviipDL-p~-ee~~~~~~~~~~~g--l~~I~lvap~t~~eri~~i~~~--s~gfIY~vs~~Gv 177 (258)
T PRK13111 104 YGVERFAADAAEAGVDGLIIPDL-PP-EEAEELRAAAKKHG--LDLIFLVAPTTTDERLKKIASH--ASGFVYYVSRAGV 177 (258)
T ss_pred cCHHHHHHHHHHcCCcEEEECCC-CH-HHHHHHHHHHHHcC--CcEEEEeCCCCCHHHHHHHHHh--CCCcEEEEeCCCC
Confidence 35677777778888887776432 11 22334555566654 3334455666554333444333 4555543 11111
Q ss_pred CCCCCCc-CCcHHHHHHHHHHhhh-CCeEEEEeccCCCCCHHHHHHHHH
Q 019335 171 LWPSGQQ-MTNEVGKAMFSKAGEL-GVPVGFMCMKGLNLHISEIEELCT 217 (342)
Q Consensus 171 ~~~~g~~-l~~~~~~~~~~~a~e~-~lpv~iH~~~~~~~~~~~l~~l~~ 217 (342)
.|.. -..+....+++.+.++ ++||.+ +.| -...+++..+.+
T Consensus 178 ---TG~~~~~~~~~~~~i~~vk~~~~~pv~v--GfG-I~~~e~v~~~~~ 220 (258)
T PRK13111 178 ---TGARSADAADLAELVARLKAHTDLPVAV--GFG-ISTPEQAAAIAA 220 (258)
T ss_pred ---CCcccCCCccHHHHHHHHHhcCCCcEEE--Ecc-cCCHHHHHHHHH
Confidence 1221 1123445566666554 666654 222 123445555544
No 194
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=70.51 E-value=77 Score=29.18 Aligned_cols=51 Identities=10% Similarity=0.034 Sum_probs=33.0
Q ss_pred HHHHHHHhc-CCceEEEecCCCCCCCCcCCcHHHHHHHHHHhhh---CCeEEEEecc
Q 019335 151 KQLEQLILK-DGFRAVRFNPYLWPSGQQMTNEVGKAMFSKAGEL---GVPVGFMCMK 203 (342)
Q Consensus 151 ~eler~~~~-~g~~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e~---~lpv~iH~~~ 203 (342)
+.++++ .+ .|+.||-+.... .....|+.++...+.+.+.+. ++||..+++.
T Consensus 28 ~li~~l-~~~~Gv~gi~v~Gst-GE~~~Ls~eEr~~~~~~~~~~~~~~~~viagvg~ 82 (293)
T PRK04147 28 RLVRFN-IEKQGIDGLYVGGST-GEAFLLSTEEKKQVLEIVAEEAKGKVKLIAQVGS 82 (293)
T ss_pred HHHHHH-HhcCCCCEEEECCCc-cccccCCHHHHHHHHHHHHHHhCCCCCEEecCCC
Confidence 344444 46 899998877543 223567777777777766552 4788888763
No 195
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=70.46 E-value=98 Score=29.28 Aligned_cols=43 Identities=19% Similarity=0.129 Sum_probs=22.2
Q ss_pred hcCCceEEEecCCCCCCCCcCCcHHHHHHHHHHhh-h--CCeEEEEeccC
Q 019335 158 LKDGFRAVRFNPYLWPSGQQMTNEVGKAMFSKAGE-L--GVPVGFMCMKG 204 (342)
Q Consensus 158 ~~~g~~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e-~--~lpv~iH~~~~ 204 (342)
.+.|...|.+.-.. | .+.=.....+++.+.+ + +++|.+|+++.
T Consensus 154 ~~~Ga~~i~i~DT~---G-~~~P~~v~~~v~~l~~~l~~~i~ig~H~Hnn 199 (337)
T PRK08195 154 ESYGAQCVYVVDSA---G-ALLPEDVRDRVRALRAALKPDTQVGFHGHNN 199 (337)
T ss_pred HhCCCCEEEeCCCC---C-CCCHHHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence 45666666554321 2 2222345555555554 3 57777777653
No 196
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=69.90 E-value=51 Score=29.88 Aligned_cols=83 Identities=12% Similarity=0.198 Sum_probs=51.3
Q ss_pred chHHHHHHHHHhcCCceEEEecCCCC-CCCCcCCcH----HHHHHHHHHhhh-CCeEEEEeccCC---------------
Q 019335 147 VIGIKQLEQLILKDGFRAVRFNPYLW-PSGQQMTNE----VGKAMFSKAGEL-GVPVGFMCMKGL--------------- 205 (342)
Q Consensus 147 ~~~~~eler~~~~~g~~Gvk~~~~~~-~~g~~l~~~----~~~~~~~~a~e~-~lpv~iH~~~~~--------------- 205 (342)
++++++.++++ +.|..-|.+..... +....++.+ ++.++.+.+.+. ++||.+|+....
T Consensus 23 ~~~~~~a~~~~-~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~~~plsiDT~~~~vi~~al~~G~~iINs 101 (257)
T TIGR01496 23 DKAVAHAERML-EEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQPDVPISVDTYRAEVARAALEAGADIIND 101 (257)
T ss_pred HHHHHHHHHHH-HCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEeCCCHHHHHHHHHcCCCEEEE
Confidence 44556666664 66888888753211 111112211 477788888776 999998886310
Q ss_pred --CCCHHHHHHHHHhCCCCcEEecccCC
Q 019335 206 --NLHISEIEELCTEFPSTTVLLDHLAF 231 (342)
Q Consensus 206 --~~~~~~l~~l~~~~P~lk~vl~H~G~ 231 (342)
....+.+..++++| +..+|+-|..+
T Consensus 102 is~~~~~~~~~l~~~~-~~~vV~m~~~g 128 (257)
T TIGR01496 102 VSGGQDPAMLEVAAEY-GVPLVLMHMRG 128 (257)
T ss_pred CCCCCCchhHHHHHHc-CCcEEEEeCCC
Confidence 01134577888888 68899999864
No 197
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=69.82 E-value=91 Score=28.61 Aligned_cols=127 Identities=15% Similarity=0.162 Sum_probs=70.5
Q ss_pred HHHHHHHhcCCceEEEecCCCCCCCCcCCcHHHHHHHHHHhhh---CCeEEEEeccCC----------------------
Q 019335 151 KQLEQLILKDGFRAVRFNPYLWPSGQQMTNEVGKAMFSKAGEL---GVPVGFMCMKGL---------------------- 205 (342)
Q Consensus 151 ~eler~~~~~g~~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e~---~lpv~iH~~~~~---------------------- 205 (342)
+.++++ .+.|+.|+-+.... ..+..++.++...+++.+.+. ++||.+|++...
T Consensus 26 ~~i~~l-~~~Gv~gi~~~Gs~-GE~~~ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~G~d~v~~~ 103 (292)
T PRK03170 26 KLVDYL-IANGTDGLVVVGTT-GESPTLTHEEHEELIRAVVEAVNGRVPVIAGTGSNSTAEAIELTKFAEKAGADGALVV 103 (292)
T ss_pred HHHHHH-HHcCCCEEEECCcC-CccccCCHHHHHHHHHHHHHHhCCCCcEEeecCCchHHHHHHHHHHHHHcCCCEEEEC
Confidence 344444 46899999876543 234567888777887776663 588988886421
Q ss_pred -CC--------CHHHHHHHHHhCCCCcEEecccCCCCCCCCchhhHhHHHHhcccCCCcE-EEecCcccccccCCCCCCC
Q 019335 206 -NL--------HISEIEELCTEFPSTTVLLDHLAFCKPPSNDEESLAFSNLLKLSRFPQV-YVKFSALFRVSRMPFPYQD 275 (342)
Q Consensus 206 -~~--------~~~~l~~l~~~~P~lk~vl~H~G~~~p~~~~~~~~~~~~~~~l~~~~Nv-y~~~S~~~~~~~~~~~~~~ 275 (342)
|. ....+..+++.. ++.+++-|.-... + .....+.+.+|++.||| .+|-|.. +
T Consensus 104 pP~~~~~~~~~i~~~~~~ia~~~-~~pv~lYn~P~~~----g-~~l~~~~~~~L~~~p~v~giK~s~~-----------d 166 (292)
T PRK03170 104 TPYYNKPTQEGLYQHFKAIAEAT-DLPIILYNVPGRT----G-VDILPETVARLAEHPNIVGIKEATG-----------D 166 (292)
T ss_pred CCcCCCCCHHHHHHHHHHHHhcC-CCCEEEEECcccc----C-CCCCHHHHHHHHcCCCEEEEEECCC-----------C
Confidence 10 013456666666 4788887753211 0 00112334456678885 6665432 1
Q ss_pred chhHHHHHHHhcCCC-cEEEccC
Q 019335 276 LSSPLSQVVSSFGAN-RVMWGSD 297 (342)
Q Consensus 276 ~~~~l~~~i~~~G~d-RilfGSD 297 (342)
. ..+..+++..+.+ .++.|.|
T Consensus 167 ~-~~~~~~~~~~~~~~~v~~G~d 188 (292)
T PRK03170 167 L-ERVSELIELVPDDFAVYSGDD 188 (292)
T ss_pred H-HHHHHHHHhCCCCeEEEECCh
Confidence 1 3455555555433 4445555
No 198
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=69.78 E-value=98 Score=30.07 Aligned_cols=104 Identities=16% Similarity=0.175 Sum_probs=65.3
Q ss_pred HHHHHHhHHCCCceEEEeCCCCCccchHHHHHHHHhCCCcEEEEE--EcCCCC-cchHHHHHHHHHhcCCceEEEecCCC
Q 019335 95 DFLLQCMEEASVDGALIVQPINHKFDHSLVTSVLKKYPSKFVGCC--LANPAE-DVIGIKQLEQLILKDGFRAVRFNPYL 171 (342)
Q Consensus 95 ~~ll~~md~~GI~~~v~~~~~~~~~~N~~~~~~~~~~p~r~~g~~--~i~p~~-~~~~~~eler~~~~~g~~Gvk~~~~~ 171 (342)
+..++..-++||+-.=++..-+-...-+...++++++.....|.. .++|-. -+..++..+++ .+.|+-.|++--..
T Consensus 101 e~Fv~ka~~nGidvfRiFDAlND~RNl~~ai~a~kk~G~h~q~~i~YT~sPvHt~e~yv~~akel-~~~g~DSIciKDma 179 (472)
T COG5016 101 EKFVEKAAENGIDVFRIFDALNDVRNLKTAIKAAKKHGAHVQGTISYTTSPVHTLEYYVELAKEL-LEMGVDSICIKDMA 179 (472)
T ss_pred HHHHHHHHhcCCcEEEechhccchhHHHHHHHHHHhcCceeEEEEEeccCCcccHHHHHHHHHHH-HHcCCCEEEeeccc
Confidence 555667778999988887652211122466788888877666654 356644 34455555555 57888887765331
Q ss_pred CCCCCcCCcHHHHHHHHHHhh-hCCeEEEEecc
Q 019335 172 WPSGQQMTNEVGKAMFSKAGE-LGVPVGFMCMK 203 (342)
Q Consensus 172 ~~~g~~l~~~~~~~~~~~a~e-~~lpv~iH~~~ 203 (342)
| -++=...+++.+.+.+ .++||.+|++.
T Consensus 180 ---G-lltP~~ayelVk~iK~~~~~pv~lHtH~ 208 (472)
T COG5016 180 ---G-LLTPYEAYELVKAIKKELPVPVELHTHA 208 (472)
T ss_pred ---c-cCChHHHHHHHHHHHHhcCCeeEEeccc
Confidence 2 2222345666666665 79999999974
No 199
>PLN02591 tryptophan synthase
Probab=69.78 E-value=86 Score=28.34 Aligned_cols=98 Identities=15% Similarity=0.217 Sum_probs=46.6
Q ss_pred ChHHHHHHhHHCCCceEEEeCCCCCccchHHHHHHHHhCCCcEEEEEEcCCCCcchHHHHHHHHHhcCCceEEE-ecCCC
Q 019335 93 HVDFLLQCMEEASVDGALIVQPINHKFDHSLVTSVLKKYPSKFVGCCLANPAEDVIGIKQLEQLILKDGFRAVR-FNPYL 171 (342)
Q Consensus 93 ~~~~ll~~md~~GI~~~v~~~~~~~~~~N~~~~~~~~~~p~r~~g~~~i~p~~~~~~~~eler~~~~~g~~Gvk-~~~~~ 171 (342)
..+..++.+.++||++.++..-. -.+.+...+.++++. +..+..+.|..+++-++++.+. ..||.-+- ....
T Consensus 94 G~~~F~~~~~~aGv~GviipDLP--~ee~~~~~~~~~~~g--l~~I~lv~Ptt~~~ri~~ia~~--~~gFIY~Vs~~Gv- 166 (250)
T PLN02591 94 GIDKFMATIKEAGVHGLVVPDLP--LEETEALRAEAAKNG--IELVLLTTPTTPTERMKAIAEA--SEGFVYLVSSTGV- 166 (250)
T ss_pred HHHHHHHHHHHcCCCEEEeCCCC--HHHHHHHHHHHHHcC--CeEEEEeCCCCCHHHHHHHHHh--CCCcEEEeeCCCC-
Confidence 45667777777777777664321 123445555566653 4444455565544223333322 34555321 1111
Q ss_pred CCCCCcC-CcHHHHHHHHHHhhh-CCeEEE
Q 019335 172 WPSGQQM-TNEVGKAMFSKAGEL-GVPVGF 199 (342)
Q Consensus 172 ~~~g~~l-~~~~~~~~~~~a~e~-~lpv~i 199 (342)
.|..- ..+....+++.+.++ ++||.+
T Consensus 167 --TG~~~~~~~~~~~~i~~vk~~~~~Pv~v 194 (250)
T PLN02591 167 --TGARASVSGRVESLLQELKEVTDKPVAV 194 (250)
T ss_pred --cCCCcCCchhHHHHHHHHHhcCCCceEE
Confidence 12221 134455555555553 666654
No 200
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=69.72 E-value=89 Score=28.47 Aligned_cols=99 Identities=14% Similarity=0.181 Sum_probs=46.7
Q ss_pred ChHHHHHHhHHCCCceEEEeCCCCCccchHHHHHHHHhCCCcEEEEEEcCCCCcchHHHHHHHHHhcCCceEEEecCCCC
Q 019335 93 HVDFLLQCMEEASVDGALIVQPINHKFDHSLVTSVLKKYPSKFVGCCLANPAEDVIGIKQLEQLILKDGFRAVRFNPYLW 172 (342)
Q Consensus 93 ~~~~ll~~md~~GI~~~v~~~~~~~~~~N~~~~~~~~~~p~r~~g~~~i~p~~~~~~~~eler~~~~~g~~Gvk~~~~~~ 172 (342)
..+.+++.+.++||++.++..-.. .+-+.+.+.++++. +.....+.|..+++-++.+.+. ..||.=+.-.+..
T Consensus 107 G~e~F~~~~~~aGvdgviipDLP~--ee~~~~~~~~~~~g--i~~I~lv~PtT~~eri~~i~~~--a~gFIY~vS~~Gv- 179 (263)
T CHL00200 107 GINKFIKKISQAGVKGLIIPDLPY--EESDYLISVCNLYN--IELILLIAPTSSKSRIQKIARA--APGCIYLVSTTGV- 179 (263)
T ss_pred CHHHHHHHHHHcCCeEEEecCCCH--HHHHHHHHHHHHcC--CCEEEEECCCCCHHHHHHHHHh--CCCcEEEEcCCCC-
Confidence 456677777777777766543211 12334555566653 3444556666554333333322 2345433211111
Q ss_pred CCCCc-CCcHHHHHHHHHHhhh-CCeEEE
Q 019335 173 PSGQQ-MTNEVGKAMFSKAGEL-GVPVGF 199 (342)
Q Consensus 173 ~~g~~-l~~~~~~~~~~~a~e~-~lpv~i 199 (342)
.|.. -..+.+..+.+.+.++ ++|+.+
T Consensus 180 -TG~~~~~~~~~~~~i~~ir~~t~~Pi~v 207 (263)
T CHL00200 180 -TGLKTELDKKLKKLIETIKKMTNKPIIL 207 (263)
T ss_pred -CCCCccccHHHHHHHHHHHHhcCCCEEE
Confidence 1222 1123455666665553 666654
No 201
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=69.60 E-value=80 Score=28.82 Aligned_cols=103 Identities=12% Similarity=0.075 Sum_probs=56.7
Q ss_pred ChHHHHHHhHHCCCceEEEeCCCCC---------ccc-hHHHHHHHHh-CCCcEEEEEEcCCCCcc--hHHHHHHHHHh-
Q 019335 93 HVDFLLQCMEEASVDGALIVQPINH---------KFD-HSLVTSVLKK-YPSKFVGCCLANPAEDV--IGIKQLEQLIL- 158 (342)
Q Consensus 93 ~~~~ll~~md~~GI~~~v~~~~~~~---------~~~-N~~~~~~~~~-~p~r~~g~~~i~p~~~~--~~~~eler~~~- 158 (342)
..+..+..+...||+..+++..... .++ --.+++..++ +++..+|++..+-..++ ...++++++.+
T Consensus 74 ~l~~~L~~~~~~Gi~nvL~l~GD~~~~~~~~~~~~f~~a~~Li~~i~~~~~~f~ig~a~~Peghp~~~~~~~~~~~L~~K 153 (272)
T TIGR00676 74 EIREILREYRELGIRHILALRGDPPKGEGTPTPGGFNYASELVEFIRNEFGDFDIGVAAYPEKHPEAPNLEEDIENLKRK 153 (272)
T ss_pred HHHHHHHHHHHCCCCEEEEeCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcCCeeEEEEeCCCCCCCCCCHHHHHHHHHHH
Confidence 4566777889999999997743111 111 1234555555 45555666654322222 12234554422
Q ss_pred -cCCceEEEecCCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEEec
Q 019335 159 -KDGFRAVRFNPYLWPSGQQMTNEVGKAMFSKAGELGVPVGFMCM 202 (342)
Q Consensus 159 -~~g~~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH~~ 202 (342)
+.|..-+- . -.-++-+.+..+.+.|++.|+.+-++.+
T Consensus 154 ~~aGA~f~i---T----Q~~fd~~~~~~~~~~~~~~gi~~PIi~G 191 (272)
T TIGR00676 154 VDAGADYAI---T----QLFFDNDDYYRFVDRCRAAGIDVPIIPG 191 (272)
T ss_pred HHcCCCeEe---e----ccccCHHHHHHHHHHHHHcCCCCCEecc
Confidence 34664221 1 1234667889999999998655544544
No 202
>COG0276 HemH Protoheme ferro-lyase (ferrochelatase) [Coenzyme metabolism]
Probab=69.46 E-value=38 Score=31.79 Aligned_cols=74 Identities=5% Similarity=-0.048 Sum_probs=46.7
Q ss_pred CChHHHHHHhHHCCCceEEEeCCC------CCccchHHHHHHHHhCCCcEEEEEEcCC-----CCcchHHHHHHHHHhcC
Q 019335 92 GHVDFLLQCMEEASVDGALIVQPI------NHKFDHSLVTSVLKKYPSKFVGCCLANP-----AEDVIGIKQLEQLILKD 160 (342)
Q Consensus 92 ~~~~~ll~~md~~GI~~~v~~~~~------~~~~~N~~~~~~~~~~p~r~~g~~~i~p-----~~~~~~~~eler~~~~~ 160 (342)
...++.++.|.+.||+++|+++.. ..+..++.+.+..++.... ..+-.|+. ...+..++.+++..++.
T Consensus 102 P~i~~~v~~l~~~gv~~iv~~pLyPqyS~sTt~s~~~~~~~al~~~~~~-~~i~~I~~~~~~p~yI~a~a~~I~~~~~~~ 180 (320)
T COG0276 102 PFIEEAVEELKKDGVERIVVLPLYPQYSSSTTGSYVDELARALKELRGQ-PKISTIPDYYDEPLYIEALADSIREKLAKH 180 (320)
T ss_pred CcHHHHHHHHHHcCCCeEEEEECCcccccccHHHHHHHHHHHHHhcCCC-CceEEecCccCChHHHHHHHHHHHHHHHhc
Confidence 367899999999999999998642 2344566676766655432 23444444 33344556777776666
Q ss_pred CceEEE
Q 019335 161 GFRAVR 166 (342)
Q Consensus 161 g~~Gvk 166 (342)
+....+
T Consensus 181 ~~~~~~ 186 (320)
T COG0276 181 PRDDDV 186 (320)
T ss_pred CCCCeE
Confidence 534444
No 203
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=68.62 E-value=1.1e+02 Score=30.13 Aligned_cols=107 Identities=16% Similarity=0.139 Sum_probs=60.9
Q ss_pred hHHHHHHhHHCCCceEEEeCCCCCccchHHHHHHHHhCCCcEEE-E-EEcCCCCcchHHHHHHHHHhcCCceEEEecCCC
Q 019335 94 VDFLLQCMEEASVDGALIVQPINHKFDHSLVTSVLKKYPSKFVG-C-CLANPAEDVIGIKQLEQLILKDGFRAVRFNPYL 171 (342)
Q Consensus 94 ~~~ll~~md~~GI~~~v~~~~~~~~~~N~~~~~~~~~~p~r~~g-~-~~i~p~~~~~~~~eler~~~~~g~~Gvk~~~~~ 171 (342)
.+..++...++||+..-++-+......-..+.+++++......+ + ....|....+.+.++-+.+.+.|+..|.+--..
T Consensus 98 v~~~v~~A~~~Gvd~irif~~lnd~~n~~~~v~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~a~~l~~~Gad~I~i~Dt~ 177 (448)
T PRK12331 98 VESFVQKSVENGIDIIRIFDALNDVRNLETAVKATKKAGGHAQVAISYTTSPVHTIDYFVKLAKEMQEMGADSICIKDMA 177 (448)
T ss_pred HHHHHHHHHHCCCCEEEEEEecCcHHHHHHHHHHHHHcCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 45566777889999876664422221123456777776543332 2 234454433344444443467888888776432
Q ss_pred CCCCCcCCcHHHHHHHHHHhh-hCCeEEEEeccC
Q 019335 172 WPSGQQMTNEVGKAMFSKAGE-LGVPVGFMCMKG 204 (342)
Q Consensus 172 ~~~g~~l~~~~~~~~~~~a~e-~~lpv~iH~~~~ 204 (342)
|. +.=.....+++.+.+ .++||.+|+++.
T Consensus 178 ---G~-l~P~~v~~lv~alk~~~~~pi~~H~Hnt 207 (448)
T PRK12331 178 ---GI-LTPYVAYELVKRIKEAVTVPLEVHTHAT 207 (448)
T ss_pred ---CC-CCHHHHHHHHHHHHHhcCCeEEEEecCC
Confidence 22 222345666666554 689999999854
No 204
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=68.49 E-value=60 Score=29.65 Aligned_cols=51 Identities=16% Similarity=0.116 Sum_probs=33.8
Q ss_pred HHHHHHHhcCCceEEEecCCCCCCCCcCCcHHHHHHHHHHhhh---CCeEEEEecc
Q 019335 151 KQLEQLILKDGFRAVRFNPYLWPSGQQMTNEVGKAMFSKAGEL---GVPVGFMCMK 203 (342)
Q Consensus 151 ~eler~~~~~g~~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e~---~lpv~iH~~~ 203 (342)
+.++++ .+.|+.|+-+.... .....++.++...+.+.+.+. ++||.++++.
T Consensus 25 ~~i~~l-~~~Gv~gl~v~Gst-GE~~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~~ 78 (284)
T cd00950 25 RLIEFQ-IENGTDGLVVCGTT-GESPTLSDEEHEAVIEAVVEAVNGRVPVIAGTGS 78 (284)
T ss_pred HHHHHH-HHcCCCEEEECCCC-cchhhCCHHHHHHHHHHHHHHhCCCCcEEeccCC
Confidence 344444 46788888877543 224467777777887776664 5788888763
No 205
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=68.39 E-value=23 Score=28.17 Aligned_cols=42 Identities=19% Similarity=0.305 Sum_probs=23.3
Q ss_pred HHHHHHhcCCceEEEecCCCCCCCCcCCcHHHHHHHHHHhhhCCeE
Q 019335 152 QLEQLILKDGFRAVRFNPYLWPSGQQMTNEVGKAMFSKAGELGVPV 197 (342)
Q Consensus 152 eler~~~~~g~~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv 197 (342)
.+.+. +..||+.|--+. |+|....+|.+..+=+++++.|+..
T Consensus 20 D~~~i-aa~GFksiI~nR---PDgEe~~QP~~~~i~~aa~~aGl~y 61 (130)
T COG3453 20 DIASI-AALGFKSIICNR---PDGEEPGQPGFAAIAAAAEAAGLTY 61 (130)
T ss_pred HHHHH-HHhccceecccC---CCCCCCCCCChHHHHHHHHhcCCce
Confidence 34444 355666553321 3455556666666666666666664
No 206
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=68.21 E-value=58 Score=30.57 Aligned_cols=106 Identities=17% Similarity=0.158 Sum_probs=67.9
Q ss_pred EcCCCCcchHHHHHHHHHhcCCceEEEecCCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEEeccCCCCCHHHHHHHHHhC
Q 019335 140 LANPAEDVIGIKQLEQLILKDGFRAVRFNPYLWPSGQQMTNEVGKAMFSKAGELGVPVGFMCMKGLNLHISEIEELCTEF 219 (342)
Q Consensus 140 ~i~p~~~~~~~~eler~~~~~g~~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH~~~~~~~~~~~l~~l~~~~ 219 (342)
...|.+.. ++++|+ ..+...+|+.... + ...|+++++...+.|+.+-+|-..-..+.....+++++
T Consensus 107 ~SSPfd~~-svd~l~----~~~~~ayKIaS~E------~---~~~plik~iA~~~kPiIlSTGma~~~ei~~av~~~r~~ 172 (347)
T COG2089 107 FSSPFDLT-AVDLLE----SLNPPAYKIASGE------I---NDLPLIKYIAKKGKPIILSTGMATIEEIEEAVAILREN 172 (347)
T ss_pred EecCCCHH-HHHHHH----hcCCCeEEecCcc------c---cChHHHHHHHhcCCCEEEEcccccHHHHHHHHHHHHhc
Confidence 34566543 566664 4477777776532 1 23699999999999998877643223345667788888
Q ss_pred CCCcEEecccCCCCCCCCchhhHhHHHHhccc-CCCcEEEecCc
Q 019335 220 PSTTVLLDHLAFCKPPSNDEESLAFSNLLKLS-RFPQVYVKFSA 262 (342)
Q Consensus 220 P~lk~vl~H~G~~~p~~~~~~~~~~~~~~~l~-~~~Nvy~~~S~ 262 (342)
-.-.+++-||-...|-. ....+...+.+|+ .+ |+-+.+|.
T Consensus 173 g~~~i~LLhC~s~YPap--~ed~NL~~i~~l~~~F-n~~vGlSD 213 (347)
T COG2089 173 GNPDIALLHCTSAYPAP--FEDVNLKAIPKLAEAF-NAIVGLSD 213 (347)
T ss_pred CCCCeEEEEecCCCCCC--HHHhhHHHHHHHHHHh-CCcccccc
Confidence 66668999998866521 2223344455554 34 77777775
No 207
>PRK08123 histidinol-phosphatase; Reviewed
Probab=68.19 E-value=37 Score=30.87 Aligned_cols=40 Identities=15% Similarity=0.173 Sum_probs=29.1
Q ss_pred CCeeeeeeeccCCCCccCCCCCCCCCCCCCCCCChHHHHHHhHHCCCceEEEeC
Q 019335 60 VKIIDSHLHVWASPEEAADKFPYFPGQEPTLPGHVDFLLQCMEEASVDGALIVQ 113 (342)
Q Consensus 60 ~~iID~H~Hl~~~~~~~~~~~p~~~~~~~~~~~~~~~ll~~md~~GI~~~v~~~ 113 (342)
||++|.|+|-..... + ...+++++++...+.|++...+..
T Consensus 1 ~m~~D~H~HT~~s~h----------~----~~~~~e~~v~~Ai~~Gl~~i~~td 40 (270)
T PRK08123 1 MMKRDGHTHTPFCPH----------G----SKDDLEAYIERAIELGFTEITFTE 40 (270)
T ss_pred CCccccccCCCCCCC----------C----CCCCHHHHHHHHHHcCCcEEEEec
Confidence 467899999753210 0 013679999999999999988774
No 208
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=68.04 E-value=61 Score=29.69 Aligned_cols=127 Identities=17% Similarity=0.178 Sum_probs=72.0
Q ss_pred HHHHHHHhcCCceEEEecCCCCCCCCcCCcHHHHHHHHHHhhh---CCeEEEEeccCC----------------------
Q 019335 151 KQLEQLILKDGFRAVRFNPYLWPSGQQMTNEVGKAMFSKAGEL---GVPVGFMCMKGL---------------------- 205 (342)
Q Consensus 151 ~eler~~~~~g~~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e~---~lpv~iH~~~~~---------------------- 205 (342)
+.++++ .+.|+.|+-+.... .....++.++...+++.+.+. ++||.++++...
T Consensus 23 ~~i~~l-~~~Gv~Gi~~~Gst-GE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~s~~~~i~~a~~a~~~Gad~v~v~ 100 (285)
T TIGR00674 23 KLIDFQ-IENGTDAIVVVGTT-GESPTLSHEEHKKVIEFVVDLVNGRVPVIAGTGSNATEEAISLTKFAEDVGADGFLVV 100 (285)
T ss_pred HHHHHH-HHcCCCEEEECccC-cccccCCHHHHHHHHHHHHHHhCCCCeEEEeCCCccHHHHHHHHHHHHHcCCCEEEEc
Confidence 445545 36899999876542 234568888888888877664 589999886321
Q ss_pred -CC----C----HHHHHHHHHhCCCCcEEecccCCCCCCCCchhhHhHHHHhcccCCCcE-EEecCcccccccCCCCCCC
Q 019335 206 -NL----H----ISEIEELCTEFPSTTVLLDHLAFCKPPSNDEESLAFSNLLKLSRFPQV-YVKFSALFRVSRMPFPYQD 275 (342)
Q Consensus 206 -~~----~----~~~l~~l~~~~P~lk~vl~H~G~~~p~~~~~~~~~~~~~~~l~~~~Nv-y~~~S~~~~~~~~~~~~~~ 275 (342)
|. . ...+..+++.. ++.+++-+.-.. .+ .....+.+.+|++.||| .+|-|.. +
T Consensus 101 pP~y~~~~~~~i~~~~~~i~~~~-~~pi~lYn~P~~----tg-~~l~~~~l~~L~~~~~v~giK~s~~-----------d 163 (285)
T TIGR00674 101 TPYYNKPTQEGLYQHFKAIAEEV-DLPIILYNVPSR----TG-VSLYPETVKRLAEEPNIVAIKEATG-----------N 163 (285)
T ss_pred CCcCCCCCHHHHHHHHHHHHhcC-CCCEEEEECcHH----hc-CCCCHHHHHHHHcCCCEEEEEeCCC-----------C
Confidence 10 0 12455666665 577887665321 00 00112334567778884 6665532 0
Q ss_pred chhHHHHHHHhcCCC-cEEEccC
Q 019335 276 LSSPLSQVVSSFGAN-RVMWGSD 297 (342)
Q Consensus 276 ~~~~l~~~i~~~G~d-RilfGSD 297 (342)
. ..+.++++..+.+ +++-|.|
T Consensus 164 ~-~~~~~l~~~~~~~~~v~~G~d 185 (285)
T TIGR00674 164 L-ERISEIKAIAPDDFVVLSGDD 185 (285)
T ss_pred H-HHHHHHHHhcCCCeEEEECch
Confidence 1 3455566665532 4566666
No 209
>PF00962 A_deaminase: Adenosine/AMP deaminase immunodeficiency disease (SCID); InterPro: IPR001365 Adenosine deaminase (3.5.4.4 from EC) catalyzes the hydrolytic deamination of adenosine into inosine and AMP deaminase (3.5.4.6 from EC) catalyzes the hydrolytic deamination of AMP into IMP. It has been shown [] that these two enzymes share three regions of sequence similarities; these regions are centred on residues which are proposed to play an important role in the catalytic mechanism of these two enzymes.; GO: 0019239 deaminase activity, 0009168 purine ribonucleoside monophosphate biosynthetic process; PDB: 3LGG_B 3LGD_B 2AMX_B 3EWD_A 2QVN_A 2PGF_A 2PGR_A 3EWC_A 1W1I_G 1O5R_A ....
Probab=67.60 E-value=1.1e+02 Score=28.55 Aligned_cols=136 Identities=17% Similarity=0.113 Sum_probs=66.7
Q ss_pred cchHHHHHHHHH---hcCCceEEEecCCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEEeccCCCCCHHHHHHHHHhCCCC
Q 019335 146 DVIGIKQLEQLI---LKDGFRAVRFNPYLWPSGQQMTNEVGKAMFSKAGELGVPVGFMCMKGLNLHISEIEELCTEFPST 222 (342)
Q Consensus 146 ~~~~~~eler~~---~~~g~~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH~~~~~~~~~~~l~~l~~~~P~l 222 (342)
+++..+++-+.. ...+++||.+..... .+.. ..+.++++.+.++|+++.+|+|+.. ....+.+.+..+.--
T Consensus 146 ~~~~~~~~~~~~~~~~~~~vvG~dl~g~E~-~~~~---~~~~~~~~~a~~~gl~~t~HaGE~~--~~~~~~~ai~~l~~~ 219 (331)
T PF00962_consen 146 PDEWAEEIVELASKYPDKGVVGFDLAGDED-GGPP---LKFAPAFRKAREAGLKLTVHAGETG--GPEHIRDAILLLGAD 219 (331)
T ss_dssp THHHHHHHHHHHHHTTTTTEEEEEEESSTT-STTG---GGHHHHHHHHHHTT-EEEEEESSSS--THHHHHHHHHTST-S
T ss_pred hHHHHHHHHHHHhhcccceEEEEEecCCcc-cCch---HHHHHHHhhhcccceeecceecccC--Ccccccchhhhccce
Confidence 333444444433 234799999886531 1222 2389999999999999999999652 344555555553322
Q ss_pred cEEecccCCCCCCCCchhhHhHHHHhcccCCCcEEEecCcccccccCCCC-CCCchhHHHHHHHhcCCCcEEEccCCCCC
Q 019335 223 TVLLDHLAFCKPPSNDEESLAFSNLLKLSRFPQVYVKFSALFRVSRMPFP-YQDLSSPLSQVVSSFGANRVMWGSDFPYV 301 (342)
Q Consensus 223 k~vl~H~G~~~p~~~~~~~~~~~~~~~l~~~~Nvy~~~S~~~~~~~~~~~-~~~~~~~l~~~i~~~G~dRilfGSD~P~~ 301 (342)
=|+|+-... . . .+++++....++-++++..-......++ +. -.| ++.+++. |. +|-.+||=|..
T Consensus 220 --RIgHG~~~~----~--~---p~l~~~~~~~~I~iEvcptSN~~~~~~~~~~-~hP-~~~~~~~-gv-~v~i~TDd~~~ 284 (331)
T PF00962_consen 220 --RIGHGVRLI----K--D---PELLELLAERQIPIEVCPTSNVQLGAVPSYE-EHP-LRKLLDA-GV-PVSINTDDPGV 284 (331)
T ss_dssp --EEEE-GGGG----G--S---HHHHHHHHHTT-EEEE-HHHHHHTTSSSTGG-G-C-HHHHHHT-T--EEEE--BSHHH
T ss_pred --eecchhhhh----h--h---hHHHHHHHHhCCCeeeCCCcCcccceeeecc-hhH-HHHHHHc-CC-ceeccCCCccc
Confidence 345654321 0 0 1233332334677777643111111111 11 112 5666664 43 67777776554
Q ss_pred C
Q 019335 302 V 302 (342)
Q Consensus 302 ~ 302 (342)
.
T Consensus 285 ~ 285 (331)
T PF00962_consen 285 F 285 (331)
T ss_dssp H
T ss_pred c
Confidence 3
No 210
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=67.49 E-value=99 Score=28.14 Aligned_cols=113 Identities=18% Similarity=0.157 Sum_probs=54.8
Q ss_pred ChHHHHHHhHHCCCceEEEeCCCCCccchHHHHHHHHhCCCcEEEEEEcCCCCcchHHHHHHHHHhcCCceEEEecCCCC
Q 019335 93 HVDFLLQCMEEASVDGALIVQPINHKFDHSLVTSVLKKYPSKFVGCCLANPAEDVIGIKQLEQLILKDGFRAVRFNPYLW 172 (342)
Q Consensus 93 ~~~~ll~~md~~GI~~~v~~~~~~~~~~N~~~~~~~~~~p~r~~g~~~i~p~~~~~~~~eler~~~~~g~~Gvk~~~~~~ 172 (342)
..+..++.+.++||++.++.... ..+.+.+.+.++++. +..+..+.|..+++-++++.+. ..||.=+.-...
T Consensus 103 G~e~F~~~~~~aGvdGlIipDLP--~ee~~~~~~~~~~~g--l~~I~lv~p~t~~~Ri~~i~~~--a~gFiY~vs~~G-- 174 (259)
T PF00290_consen 103 GIERFFKEAKEAGVDGLIIPDLP--PEESEELREAAKKHG--LDLIPLVAPTTPEERIKKIAKQ--ASGFIYLVSRMG-- 174 (259)
T ss_dssp -HHHHHHHHHHHTEEEEEETTSB--GGGHHHHHHHHHHTT---EEEEEEETTS-HHHHHHHHHH---SSEEEEESSSS--
T ss_pred chHHHHHHHHHcCCCEEEEcCCC--hHHHHHHHHHHHHcC--CeEEEEECCCCCHHHHHHHHHh--CCcEEEeeccCC--
Confidence 35666777777777776654321 123445566666663 4445556665554333333332 356654321111
Q ss_pred CCCCcC-CcHHHHHHHHHHhhh-CCeEEEEeccCCCCCHHHHHHHH
Q 019335 173 PSGQQM-TNEVGKAMFSKAGEL-GVPVGFMCMKGLNLHISEIEELC 216 (342)
Q Consensus 173 ~~g~~l-~~~~~~~~~~~a~e~-~lpv~iH~~~~~~~~~~~l~~l~ 216 (342)
..|... .+..+.++++.+.++ ++||.+ |-| =+..+++..+.
T Consensus 175 vTG~~~~~~~~l~~~i~~ik~~~~~Pv~v--GFG-I~~~e~~~~~~ 217 (259)
T PF00290_consen 175 VTGSRTELPDELKEFIKRIKKHTDLPVAV--GFG-ISTPEQAKKLA 217 (259)
T ss_dssp SSSTTSSCHHHHHHHHHHHHHTTSS-EEE--ESS-S-SHHHHHHHH
T ss_pred CCCCcccchHHHHHHHHHHHhhcCcceEE--ecC-CCCHHHHHHHH
Confidence 113322 234567777777764 577654 322 13345555555
No 211
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=67.33 E-value=29 Score=30.30 Aligned_cols=131 Identities=14% Similarity=0.125 Sum_probs=69.7
Q ss_pred ChHHHHHHhHHCCCceEEEeCCC-CCccc-hHHHHHHHHhCCCcEEEEEEcCCCCcc---------hHHHHHHHHHhcCC
Q 019335 93 HVDFLLQCMEEASVDGALIVQPI-NHKFD-HSLVTSVLKKYPSKFVGCCLANPAEDV---------IGIKQLEQLILKDG 161 (342)
Q Consensus 93 ~~~~ll~~md~~GI~~~v~~~~~-~~~~~-N~~~~~~~~~~p~r~~g~~~i~p~~~~---------~~~~eler~~~~~g 161 (342)
+.+..++ ..+.|.++.=++..- .-+.. .-.+++.+.+..+ +--.+.|-|+..+ ...+.++.+ ++.|
T Consensus 9 s~~~a~~-A~~~GAdRiELc~~l~~GGlTPS~g~i~~~~~~~~-ipv~vMIRpr~gdF~Ys~~E~~~M~~dI~~~-~~~G 85 (201)
T PF03932_consen 9 SLEDALA-AEAGGADRIELCSNLEVGGLTPSLGLIRQAREAVD-IPVHVMIRPRGGDFVYSDEEIEIMKEDIRML-RELG 85 (201)
T ss_dssp SHHHHHH-HHHTT-SEEEEEBTGGGT-B---HHHHHHHHHHTT-SEEEEE--SSSS-S---HHHHHHHHHHHHHH-HHTT
T ss_pred CHHHHHH-HHHcCCCEEEECCCccCCCcCcCHHHHHHHHhhcC-CceEEEECCCCCCccCCHHHHHHHHHHHHHH-HHcC
Confidence 3444443 357899999887531 11111 1223444443332 3445677776431 122344444 5789
Q ss_pred ceEEEecCCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEEec-cCCCCCHHHHHHHHHhCCCCcEEecccCCC
Q 019335 162 FRAVRFNPYLWPSGQQMTNEVGKAMFSKAGELGVPVGFMCM-KGLNLHISEIEELCTEFPSTTVLLDHLAFC 232 (342)
Q Consensus 162 ~~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH~~-~~~~~~~~~l~~l~~~~P~lk~vl~H~G~~ 232 (342)
..||.+.... ....+|-+.+..+.+.|. ++++.+|-. +..+.....++.+.+ + +++=|+.+.|..
T Consensus 86 adG~VfG~L~--~dg~iD~~~~~~Li~~a~--~~~~tFHRAfD~~~d~~~al~~L~~-l-G~~rVLTSGg~~ 151 (201)
T PF03932_consen 86 ADGFVFGALT--EDGEIDEEALEELIEAAG--GMPVTFHRAFDEVPDPEEALEQLIE-L-GFDRVLTSGGAP 151 (201)
T ss_dssp -SEEEE--BE--TTSSB-HHHHHHHHHHHT--TSEEEE-GGGGGSSTHHHHHHHHHH-H-T-SEEEESTTSS
T ss_pred CCeeEEEeEC--CCCCcCHHHHHHHHHhcC--CCeEEEeCcHHHhCCHHHHHHHHHh-c-CCCEEECCCCCC
Confidence 9999988643 245688899999999987 999999964 222222233444444 4 788899998873
No 212
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=67.21 E-value=1.1e+02 Score=31.39 Aligned_cols=106 Identities=18% Similarity=0.211 Sum_probs=60.8
Q ss_pred hHHHHHHhHHCCCceEEEeCCCCCccchHHHHHHHHhCCCcEEEE-E-EcCCCC-cchHHHHHHHHHhcCCceEEEecCC
Q 019335 94 VDFLLQCMEEASVDGALIVQPINHKFDHSLVTSVLKKYPSKFVGC-C-LANPAE-DVIGIKQLEQLILKDGFRAVRFNPY 170 (342)
Q Consensus 94 ~~~ll~~md~~GI~~~v~~~~~~~~~~N~~~~~~~~~~p~r~~g~-~-~i~p~~-~~~~~~eler~~~~~g~~Gvk~~~~ 170 (342)
.+..++...++||+..-++.+......-....+++++..-.+.+. + ...|.. .+..++.++++ .+.|+..|.+--.
T Consensus 93 v~~~v~~a~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~~~~~-~~~Gad~I~i~Dt 171 (582)
T TIGR01108 93 VERFVKKAVENGMDVFRIFDALNDPRNLQAAIQAAKKHGAHAQGTISYTTSPVHTLETYLDLAEEL-LEMGVDSICIKDM 171 (582)
T ss_pred HHHHHHHHHHCCCCEEEEEEecCcHHHHHHHHHHHHHcCCEEEEEEEeccCCCCCHHHHHHHHHHH-HHcCCCEEEECCC
Confidence 345567778899998776644222211234567777765444432 2 235533 34334444444 5789888877643
Q ss_pred CCCCCCcCCcHHHHHHHHHHhh-hCCeEEEEeccC
Q 019335 171 LWPSGQQMTNEVGKAMFSKAGE-LGVPVGFMCMKG 204 (342)
Q Consensus 171 ~~~~g~~l~~~~~~~~~~~a~e-~~lpv~iH~~~~ 204 (342)
. |. +.=.....+++.+.+ .++||.+|+++.
T Consensus 172 ~---G~-~~P~~v~~lv~~lk~~~~~pi~~H~Hnt 202 (582)
T TIGR01108 172 A---GI-LTPKAAYELVSALKKRFGLPVHLHSHAT 202 (582)
T ss_pred C---CC-cCHHHHHHHHHHHHHhCCCceEEEecCC
Confidence 2 22 222345666666654 689999999854
No 213
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=67.12 E-value=1e+02 Score=31.71 Aligned_cols=106 Identities=15% Similarity=0.159 Sum_probs=61.8
Q ss_pred hHHHHHHhHHCCCceEEEeCCCCCccchHHHHHHHHhCCCcEEEEE--EcCCCC-cchHHHHHHHHHhcCCceEEEecCC
Q 019335 94 VDFLLQCMEEASVDGALIVQPINHKFDHSLVTSVLKKYPSKFVGCC--LANPAE-DVIGIKQLEQLILKDGFRAVRFNPY 170 (342)
Q Consensus 94 ~~~ll~~md~~GI~~~v~~~~~~~~~~N~~~~~~~~~~p~r~~g~~--~i~p~~-~~~~~~eler~~~~~g~~Gvk~~~~ 170 (342)
.+..++...++||+..-++.+......-....+.+++....+.+.. ...|.. .+..++.++++ .+.|+..|.+--.
T Consensus 98 v~~~v~~A~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~i~~t~~p~~t~~~~~~~a~~l-~~~Gad~I~i~Dt 176 (592)
T PRK09282 98 VEKFVEKAAENGIDIFRIFDALNDVRNMEVAIKAAKKAGAHVQGTISYTTSPVHTIEKYVELAKEL-EEMGCDSICIKDM 176 (592)
T ss_pred hHHHHHHHHHCCCCEEEEEEecChHHHHHHHHHHHHHcCCEEEEEEEeccCCCCCHHHHHHHHHHH-HHcCCCEEEECCc
Confidence 4555677788999987776543222122345677777654444332 234543 33344555555 5778888876633
Q ss_pred CCCCCCcCCcHHHHHHHHHHhh-hCCeEEEEeccC
Q 019335 171 LWPSGQQMTNEVGKAMFSKAGE-LGVPVGFMCMKG 204 (342)
Q Consensus 171 ~~~~g~~l~~~~~~~~~~~a~e-~~lpv~iH~~~~ 204 (342)
. |. +.=.....+++.+.+ .++||.+|+++.
T Consensus 177 ~---G~-~~P~~~~~lv~~lk~~~~~pi~~H~Hnt 207 (592)
T PRK09282 177 A---GL-LTPYAAYELVKALKEEVDLPVQLHSHCT 207 (592)
T ss_pred C---CC-cCHHHHHHHHHHHHHhCCCeEEEEEcCC
Confidence 2 32 222355666766655 689999999864
No 214
>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]
Probab=67.03 E-value=40 Score=30.00 Aligned_cols=141 Identities=11% Similarity=0.106 Sum_probs=80.3
Q ss_pred HHhHHCCCceEEEeCC-CCCccc--hHHHHHHHHhCCCcEEEEEEcCCCCcc-----hH----HHHHHHHHhcCCceEEE
Q 019335 99 QCMEEASVDGALIVQP-INHKFD--HSLVTSVLKKYPSKFVGCCLANPAEDV-----IG----IKQLEQLILKDGFRAVR 166 (342)
Q Consensus 99 ~~md~~GI~~~v~~~~-~~~~~~--N~~~~~~~~~~p~r~~g~~~i~p~~~~-----~~----~~eler~~~~~g~~Gvk 166 (342)
....+.|.++.=++.. +.-+.. --.+.+.++..+ +-.+..|-|+-.+ .. .+.++.+ ++.|+.||.
T Consensus 15 ~~A~~~GAdRiELC~~La~GG~TPSyG~~k~a~~~~~--ipv~~MIRPRgGdFvY~~~E~~iM~~DI~~~-~~lG~~GVV 91 (241)
T COG3142 15 LAAQAAGADRIELCDALAEGGLTPSYGVIKEAVELSK--IPVYVMIRPRGGDFVYSDDELEIMLEDIRLA-RELGVQGVV 91 (241)
T ss_pred HHHHHcCCceeehhhccccCCCCCCHHHHHHHHhhcC--CceEEEEecCCCCcccChHHHHHHHHHHHHH-HHcCCCcEE
Confidence 3345678888766542 111111 112344444332 4445677776422 11 2333333 689999999
Q ss_pred ecCCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEEec-cCCCCCHHHHHHHHHhCCCCcEEecccCCCCCCCCchhhHhHH
Q 019335 167 FNPYLWPSGQQMTNEVGKAMFSKAGELGVPVGFMCM-KGLNLHISEIEELCTEFPSTTVLLDHLAFCKPPSNDEESLAFS 245 (342)
Q Consensus 167 ~~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH~~-~~~~~~~~~l~~l~~~~P~lk~vl~H~G~~~p~~~~~~~~~~~ 245 (342)
+.... ....+|-+.++.+.+.+. ++.|.+|.. +..+.....++.+.+ + ++.=|+.|.|... ..++...|+
T Consensus 92 ~G~lt--~dg~iD~~~le~Li~aA~--gL~vTFHrAFD~~~d~~~ale~li~-~-Gv~RILTsGg~~s---a~eg~~~l~ 162 (241)
T COG3142 92 LGALT--ADGNIDMPRLEKLIEAAG--GLGVTFHRAFDECPDPLEALEQLIE-L-GVERILTSGGKAS---ALEGLDLLK 162 (241)
T ss_pred Eeeec--CCCccCHHHHHHHHHHcc--CCceeeehhhhhcCCHHHHHHHHHH-C-CCcEEecCCCcCc---hhhhHHHHH
Confidence 87643 356789999999999887 888889964 221222234555544 3 5666899988632 223444555
Q ss_pred HHhccc
Q 019335 246 NLLKLS 251 (342)
Q Consensus 246 ~~~~l~ 251 (342)
++.+.+
T Consensus 163 ~li~~a 168 (241)
T COG3142 163 RLIEQA 168 (241)
T ss_pred HHHHHh
Confidence 555544
No 215
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=66.25 E-value=40 Score=26.82 Aligned_cols=74 Identities=18% Similarity=0.179 Sum_probs=50.8
Q ss_pred HHHHHHHHhCCCcEEEEEEcCCC-----CcchHHHHHHHHHhcCCceEEEecCCCCCCCCcCCcHHHHHHHHHHhhhCCe
Q 019335 122 SLVTSVLKKYPSKFVGCCLANPA-----EDVIGIKQLEQLILKDGFRAVRFNPYLWPSGQQMTNEVGKAMFSKAGELGVP 196 (342)
Q Consensus 122 ~~~~~~~~~~p~r~~g~~~i~p~-----~~~~~~~eler~~~~~g~~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e~~lp 196 (342)
+.+.++.+. -|..+..--|+ .|. -+.+++.++..|+. +.+.|.. +..++....+.+-+++.|.+=|
T Consensus 19 ~D~~~iaa~---GFksiI~nRPDgEe~~QP~--~~~i~~aa~~aGl~-y~~iPV~---~~~iT~~dV~~f~~Al~eaegP 89 (130)
T COG3453 19 ADIASIAAL---GFKSIICNRPDGEEPGQPG--FAAIAAAAEAAGLT-YTHIPVT---GGGITEADVEAFQRALDEAEGP 89 (130)
T ss_pred HHHHHHHHh---ccceecccCCCCCCCCCCC--hHHHHHHHHhcCCc-eEEeecC---CCCCCHHHHHHHHHHHHHhCCC
Confidence 344444433 25555444443 343 35677777788887 6666653 5678888899999999999999
Q ss_pred EEEEeccC
Q 019335 197 VGFMCMKG 204 (342)
Q Consensus 197 v~iH~~~~ 204 (342)
|+.||..|
T Consensus 90 VlayCrsG 97 (130)
T COG3453 90 VLAYCRSG 97 (130)
T ss_pred EEeeecCC
Confidence 99999866
No 216
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=66.22 E-value=1.2e+02 Score=28.66 Aligned_cols=43 Identities=19% Similarity=0.135 Sum_probs=20.2
Q ss_pred hcCCceEEEecCCCCCCCCcCCcHHHHHHHHHHhh-hC--CeEEEEeccC
Q 019335 158 LKDGFRAVRFNPYLWPSGQQMTNEVGKAMFSKAGE-LG--VPVGFMCMKG 204 (342)
Q Consensus 158 ~~~g~~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e-~~--lpv~iH~~~~ 204 (342)
.+.|...|.+.-.. | .+.=.....+++.+.+ ++ ++|.+|+++.
T Consensus 153 ~~~Ga~~i~i~DT~---G-~~~P~~v~~~v~~l~~~l~~~i~ig~H~Hnn 198 (333)
T TIGR03217 153 ESYGADCVYIVDSA---G-AMLPDDVRDRVRALKAVLKPETQVGFHAHHN 198 (333)
T ss_pred HhcCCCEEEEccCC---C-CCCHHHHHHHHHHHHHhCCCCceEEEEeCCC
Confidence 45566655544321 2 2222244444544443 33 6666666643
No 217
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=65.92 E-value=1.1e+02 Score=27.93 Aligned_cols=36 Identities=19% Similarity=0.206 Sum_probs=21.6
Q ss_pred hcCCceEEEecCCCCCCCCcCCcHHHHHHHHHHhhhCCeE
Q 019335 158 LKDGFRAVRFNPYLWPSGQQMTNEVGKAMFSKAGELGVPV 197 (342)
Q Consensus 158 ~~~g~~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv 197 (342)
++.|+. |.+.... ....+.+.+..+.+.+.+.|.-.
T Consensus 119 k~~G~~-v~~~~~~---a~~~~~~~~~~~~~~~~~~g~~~ 154 (266)
T cd07944 119 KEKGYE-VFFNLMA---ISGYSDEELLELLELVNEIKPDV 154 (266)
T ss_pred HHCCCe-EEEEEEe---ecCCCHHHHHHHHHHHHhCCCCE
Confidence 566654 3344322 12245667788888888887664
No 218
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=65.10 E-value=27 Score=27.24 Aligned_cols=76 Identities=17% Similarity=0.107 Sum_probs=42.6
Q ss_pred HHHHHHHHhCCCcEEEEEEcCCCCc--c-hHHHHHHHHHhcCCceEEEecCCCCCCCCcCCcHHHHHHHHHHhhhCCeEE
Q 019335 122 SLVTSVLKKYPSKFVGCCLANPAED--V-IGIKQLEQLILKDGFRAVRFNPYLWPSGQQMTNEVGKAMFSKAGELGVPVG 198 (342)
Q Consensus 122 ~~~~~~~~~~p~r~~g~~~i~p~~~--~-~~~~eler~~~~~g~~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~ 198 (342)
+.+.++.+ . .|..+..+-|... + -..+++++.+++.|+.-+-+... +..++......+-+.+++..-||+
T Consensus 18 ~d~~~la~-~--GfktVInlRpd~E~~~qp~~~~~~~~a~~~Gl~y~~iPv~----~~~~~~~~v~~f~~~l~~~~~Pvl 90 (110)
T PF04273_consen 18 EDLAQLAA-Q--GFKTVINLRPDGEEPGQPSSAEEAAAAEALGLQYVHIPVD----GGAITEEDVEAFADALESLPKPVL 90 (110)
T ss_dssp HHHHHHHH-C--T--EEEE-S-TTSTTT-T-HHCHHHHHHHCT-EEEE--------TTT--HHHHHHHHHHHHTTTTSEE
T ss_pred HHHHHHHH-C--CCcEEEECCCCCCCCCCCCHHHHHHHHHHcCCeEEEeecC----CCCCCHHHHHHHHHHHHhCCCCEE
Confidence 34444443 2 3665655555421 1 13456777778899886544432 345777888999999999999999
Q ss_pred EEeccC
Q 019335 199 FMCMKG 204 (342)
Q Consensus 199 iH~~~~ 204 (342)
+||..|
T Consensus 91 ~hC~sG 96 (110)
T PF04273_consen 91 AHCRSG 96 (110)
T ss_dssp EE-SCS
T ss_pred EECCCC
Confidence 999865
No 219
>PRK09248 putative hydrolase; Validated
Probab=64.57 E-value=1e+02 Score=27.39 Aligned_cols=38 Identities=16% Similarity=0.047 Sum_probs=29.3
Q ss_pred CeeeeeeeccCCCCccCCCCCCCCCCCCCCCCChHHHHHHhHHCCCceEEEeC
Q 019335 61 KIIDSHLHVWASPEEAADKFPYFPGQEPTLPGHVDFLLQCMEEASVDGALIVQ 113 (342)
Q Consensus 61 ~iID~H~Hl~~~~~~~~~~~p~~~~~~~~~~~~~~~ll~~md~~GI~~~v~~~ 113 (342)
+.+|.|+|-..+.. -..+++++++...+.|++...+..
T Consensus 3 ~~~D~H~HT~~s~~---------------~~~~~~e~v~~A~~~G~~~i~iTd 40 (246)
T PRK09248 3 YPVDTHTHTIASGH---------------AYSTLHENAAEAKQKGLKLFAITD 40 (246)
T ss_pred cceEeCcCCCCCCC---------------CCCCHHHHHHHHHHCCCCEEEECC
Confidence 36899999753210 135799999999999999998874
No 220
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=63.01 E-value=1.2e+02 Score=27.36 Aligned_cols=117 Identities=12% Similarity=0.079 Sum_probs=72.3
Q ss_pred ChHHHHHHhHHCCCceEEEeCCCCCccchHHHHHHHHhCCCcEEEEE-------EcCCCC--cc-hHHHHHHHHHhcCCc
Q 019335 93 HVDFLLQCMEEASVDGALIVQPINHKFDHSLVTSVLKKYPSKFVGCC-------LANPAE--DV-IGIKQLEQLILKDGF 162 (342)
Q Consensus 93 ~~~~ll~~md~~GI~~~v~~~~~~~~~~N~~~~~~~~~~p~r~~g~~-------~i~p~~--~~-~~~~eler~~~~~g~ 162 (342)
+.+.. +.+-+.|+++.++-.. .-.+-+++.+++++||+|++--. .++=+. .+ ...+.++++ ++.|+
T Consensus 86 s~~~v-~~ll~~G~~rViiGt~--av~~p~~v~~~~~~~g~rivv~lD~r~g~vav~GW~e~s~~~~~~l~~~~-~~~g~ 161 (241)
T COG0106 86 SLEDV-EALLDAGVARVIIGTA--AVKNPDLVKELCEEYGDRIVVALDARDGKVAVSGWQEDSGVELEELAKRL-EEVGL 161 (241)
T ss_pred CHHHH-HHHHHCCCCEEEEecc--eecCHHHHHHHHHHcCCcEEEEEEccCCccccccccccccCCHHHHHHHH-HhcCC
Confidence 44444 4444589999987543 23456789999999999876322 122221 11 233444444 67888
Q ss_pred eEEEecCCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEEeccCCCCCHHHHHHHHHh
Q 019335 163 RAVRFNPYLWPSGQQMTNEVGKAMFSKAGELGVPVGFMCMKGLNLHISEIEELCTE 218 (342)
Q Consensus 163 ~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH~~~~~~~~~~~l~~l~~~ 218 (342)
.++-++--. . ...+..+.++.+-+.++..++||..--| -+.+.++..+.+-
T Consensus 162 ~~ii~TdI~-~-DGtl~G~n~~l~~~l~~~~~ipviaSGG---v~s~~Di~~l~~~ 212 (241)
T COG0106 162 AHILYTDIS-R-DGTLSGPNVDLVKELAEAVDIPVIASGG---VSSLDDIKALKEL 212 (241)
T ss_pred CeEEEEecc-c-ccccCCCCHHHHHHHHHHhCcCEEEecC---cCCHHHHHHHHhc
Confidence 888766432 1 2346667778888888888999865433 2456666666653
No 221
>PRK01060 endonuclease IV; Provisional
Probab=62.48 E-value=93 Score=28.09 Aligned_cols=116 Identities=12% Similarity=0.108 Sum_probs=58.4
Q ss_pred hHHHHHHHHHhcCCce--EEEecCCCC-CCC-Cc-----CCcHHHHHHHHHHhhhCCe-EEEEeccCCCC-----CH---
Q 019335 148 IGIKQLEQLILKDGFR--AVRFNPYLW-PSG-QQ-----MTNEVGKAMFSKAGELGVP-VGFMCMKGLNL-----HI--- 209 (342)
Q Consensus 148 ~~~~eler~~~~~g~~--Gvk~~~~~~-~~g-~~-----l~~~~~~~~~~~a~e~~lp-v~iH~~~~~~~-----~~--- 209 (342)
+.++++++.+++.|+. ++..+..+. .-. .. -.-..+...++.|.++|.+ |.+|.+..... ..
T Consensus 47 ~~~~~lk~~~~~~gl~~~~~~~h~~~~~nl~~~d~~~r~~s~~~~~~~i~~A~~lga~~vv~h~G~~~~~~~~~~~~~~~ 126 (281)
T PRK01060 47 LNIEAFKAACEKYGISPEDILVHAPYLINLGNPNKEILEKSRDFLIQEIERCAALGAKLLVFHPGSHLGDIDEEDCLARI 126 (281)
T ss_pred HHHHHHHHHHHHcCCCCCceEEecceEecCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcCCcCCCCCcHHHHHHHH
Confidence 3567788887777776 343332211 000 00 1123577888889999997 46776632111 11
Q ss_pred -HHHHHHHHhCCCCcEEecccCCCCCCCCchhhHhHHHHhcccCCCc---EEEecCccc
Q 019335 210 -SEIEELCTEFPSTTVLLDHLAFCKPPSNDEESLAFSNLLKLSRFPQ---VYVKFSALF 264 (342)
Q Consensus 210 -~~l~~l~~~~P~lk~vl~H~G~~~p~~~~~~~~~~~~~~~l~~~~N---vy~~~S~~~ 264 (342)
..+..++++-.++++.+..+....... ......+.++++....+| +.+|++-++
T Consensus 127 ~e~l~~l~~~~~gv~l~iEn~~~~~~~~-~~~~~~~~~l~~~v~~~~~vg~~lD~gH~~ 184 (281)
T PRK01060 127 AESLNEALDKTQGVTIVLENTAGQGSEL-GRRFEELARIIDGVEDKSRVGVCLDTCHAF 184 (281)
T ss_pred HHHHHHHHhcCCCCEEEEecCCCCCCcc-cCCHHHHHHHHHhcCCcccEEEEEeHHhHh
Confidence 123444444457888887765421100 111223334443223343 677777554
No 222
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=62.28 E-value=52 Score=29.06 Aligned_cols=136 Identities=21% Similarity=0.238 Sum_probs=73.7
Q ss_pred hHHHHHHhHHCCCceEEEeCCCCCccchHHHHHHHHhCC-CcEEEEEEcCCCCcchHHHH-HHHHHhcCCceEEEecCCC
Q 019335 94 VDFLLQCMEEASVDGALIVQPINHKFDHSLVTSVLKKYP-SKFVGCCLANPAEDVIGIKQ-LEQLILKDGFRAVRFNPYL 171 (342)
Q Consensus 94 ~~~ll~~md~~GI~~~v~~~~~~~~~~N~~~~~~~~~~p-~r~~g~~~i~p~~~~~~~~e-ler~~~~~g~~Gvk~~~~~ 171 (342)
...+.+.++++||+..=+-.+.....+.+.+.++.+..+ .++.+++..... .++. ++.+ .+.|+..+++....
T Consensus 16 k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~----~i~~~~~~~-~~~g~~~i~i~~~~ 90 (237)
T PF00682_consen 16 KLEIAKALDEAGVDYIEVGFPFASEDDFEQVRRLREALPNARLQALCRANEE----DIERAVEAA-KEAGIDIIRIFISV 90 (237)
T ss_dssp HHHHHHHHHHHTTSEEEEEHCTSSHHHHHHHHHHHHHHHSSEEEEEEESCHH----HHHHHHHHH-HHTTSSEEEEEEET
T ss_pred HHHHHHHHHHhCCCEEEEcccccCHHHHHHhhhhhhhhcccccceeeeehHH----HHHHHHHhh-HhccCCEEEecCcc
Confidence 455677899999998765423333334555666655444 355555543332 2233 4433 46788888765332
Q ss_pred CC------CCCcC--CcHHHHHHHHHHhhhCCeEEEEeccCCCCCHHHHHHHHHh----CCCCcEEecccCCCCC
Q 019335 172 WP------SGQQM--TNEVGKAMFSKAGELGVPVGFMCMKGLNLHISEIEELCTE----FPSTTVLLDHLAFCKP 234 (342)
Q Consensus 172 ~~------~g~~l--~~~~~~~~~~~a~e~~lpv~iH~~~~~~~~~~~l~~l~~~----~P~lk~vl~H~G~~~p 234 (342)
.. .+... .-+......+++.++|..|.+.+.+.....++.+.+++++ -++.-.+.+..|...|
T Consensus 91 s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~Dt~G~~~P 165 (237)
T PF00682_consen 91 SDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCEDASRTDPEELLELAEALAEAGADIIYLADTVGIMTP 165 (237)
T ss_dssp SHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEETTTGGSSHHHHHHHHHHHHHHT-SEEEEEETTS-S-H
T ss_pred cHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCccccccccHHHHHHHHHHHHHcCCeEEEeeCccCCcCH
Confidence 10 00100 0235677788899999999888765433445444443333 2444445667777544
No 223
>TIGR02022 hutF formiminoglutamate deiminase. In some species, histidine utilization goes via urocanate to glutamate in four step, the last being removal of formamide. This model describes an alternate fourth step, formiminoglutamate hydrolase, which leads to N-formyl-L-glutamate. This product may be acted on by formylglutamate amidohydrolase (TIGR02017) and bypass glutamate as a product during its degradation. Alternatively, removal of formate (by EC 3.5.1.68) would yield glutamate.
Probab=61.20 E-value=1.7e+02 Score=28.75 Aligned_cols=51 Identities=20% Similarity=0.184 Sum_probs=34.7
Q ss_pred cCCcHHHHHHHHHHhhhCCeEEEEeccCCCCCHHHHH-----------HHHHhC--CCCcEEecccCCC
Q 019335 177 QMTNEVGKAMFSKAGELGVPVGFMCMKGLNLHISEIE-----------ELCTEF--PSTTVLLDHLAFC 232 (342)
Q Consensus 177 ~l~~~~~~~~~~~a~e~~lpv~iH~~~~~~~~~~~l~-----------~l~~~~--P~lk~vl~H~G~~ 232 (342)
....+.+..+++ +.++|+++.+|+.++ ..+.. +.+.++ -+-++++.|+.+.
T Consensus 212 ~~s~e~l~~~~~-a~~~g~~v~~H~~e~----~~e~~~~~~~~G~~~v~~l~~~g~l~~~~~~~H~~~l 275 (455)
T TIGR02022 212 AVTPEQLAAVLQ-ASDRQAPVHIHVAEQ----QKEVDDCLAWSGRRPVEWLLDHGPVDARWCLVHATHL 275 (455)
T ss_pred cCCHHHHHHHHH-HHhCCCceEEEECCC----hHHHHHHHHHhCCCHHHHHHHcCCCCCCEEEEEeecC
Confidence 456678889999 889999999999753 22222 222333 2457889999874
No 224
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=61.17 E-value=1.3e+02 Score=27.77 Aligned_cols=125 Identities=14% Similarity=0.082 Sum_probs=71.4
Q ss_pred HHHHHHhHHCCCceEEEeCCCCCccchHHHHHHHHhCCCcEEE---EEEcCCCCcchHHHHHHHHHhcCCceEEEecCCC
Q 019335 95 DFLLQCMEEASVDGALIVQPINHKFDHSLVTSVLKKYPSKFVG---CCLANPAEDVIGIKQLEQLILKDGFRAVRFNPYL 171 (342)
Q Consensus 95 ~~ll~~md~~GI~~~v~~~~~~~~~~N~~~~~~~~~~p~r~~g---~~~i~p~~~~~~~~eler~~~~~g~~Gvk~~~~~ 171 (342)
.+.++++-+.||..+|++.......+-+.+.+.++++.=|++| +..++|...-.. -+--.....|= |-+...
T Consensus 77 ~~~l~e~~~~Gvk~avIis~Gf~e~~~~~l~~~a~~~girilGPNc~Giin~~~~~~~--~~~~~~~~~G~--ValiSQ- 151 (286)
T TIGR01019 77 ADAIFEAIDAGIELIVCITEGIPVHDMLKVKRYMEESGTRLIGPNCPGIITPGECKIG--IMPGHIHKPGN--VGIVSR- 151 (286)
T ss_pred HHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCEEECCCCceEEccccccee--eccccCCCCCc--EEEEec-
Confidence 4555666678888888876543222235677888887667775 345666532100 00000001121 222211
Q ss_pred CCCCCcCCcHHHHHHHHHHhhhCCeEEEEeccCCC----CCHHHHHHHHHhCCCCcEEecccCC
Q 019335 172 WPSGQQMTNEVGKAMFSKAGELGVPVGFMCMKGLN----LHISEIEELCTEFPSTTVLLDHLAF 231 (342)
Q Consensus 172 ~~~g~~l~~~~~~~~~~~a~e~~lpv~iH~~~~~~----~~~~~l~~l~~~~P~lk~vl~H~G~ 231 (342)
.......+++.+.+.|+-+..-+..|.. ....++.+.+.+-|++|.|+-++=.
T Consensus 152 -------SG~l~~~~~~~a~~~giG~S~~Vs~Gn~a~~dv~~~D~l~~l~~Dp~T~~I~lylE~ 208 (286)
T TIGR01019 152 -------SGTLTYEAVHQLTKAGFGQSTCVGIGGDPVNGTSFIDVLEAFEKDPETEAIVMIGEI 208 (286)
T ss_pred -------cHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCCCCHHHHHHHHhhCCCCcEEEEEEec
Confidence 1123457788888888876443333322 4567888888888999999988754
No 225
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=61.03 E-value=25 Score=32.56 Aligned_cols=69 Identities=17% Similarity=0.167 Sum_probs=40.1
Q ss_pred HHHHHhHHCCCceEEEeCCCCCccchHHHH----HHHHhCCCcEEEEEEcC-CCCcchHHHHHHHHHh-cCCceEEEec
Q 019335 96 FLLQCMEEASVDGALIVQPINHKFDHSLVT----SVLKKYPSKFVGCCLAN-PAEDVIGIKQLEQLIL-KDGFRAVRFN 168 (342)
Q Consensus 96 ~ll~~md~~GI~~~v~~~~~~~~~~N~~~~----~~~~~~p~r~~g~~~i~-p~~~~~~~~eler~~~-~~g~~Gvk~~ 168 (342)
++.+...+.|++..++++|..+....+.+. ++++.-+- ++...| +.. +-..+.+.++++ .++++|||..
T Consensus 90 ~~a~~a~~~Gadav~~~pP~y~~~s~~~i~~~f~~v~~a~~~---pvilYn~~g~-~l~~~~~~~La~~~~nvvgiKds 164 (296)
T TIGR03249 90 EIARLAEKAGADGYLLLPPYLINGEQEGLYAHVEAVCESTDL---GVIVYQRDNA-VLNADTLERLADRCPNLVGFKDG 164 (296)
T ss_pred HHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHhccCC---CEEEEeCCCC-CCCHHHHHHHHhhCCCEEEEEeC
Confidence 345567789999999888765544444443 33333321 222223 221 113467777775 5799999975
No 226
>KOG2931 consensus Differentiation-related gene 1 protein (NDR1 protein), related proteins [Function unknown]
Probab=60.61 E-value=25 Score=32.51 Aligned_cols=51 Identities=12% Similarity=0.158 Sum_probs=37.7
Q ss_pred CChHHHHHHhHHCCCceEEEeCCCCCccchHHHHHHHHhCCCcEEEEEEcCCCC
Q 019335 92 GHVDFLLQCMEEASVDGALIVQPINHKFDHSLVTSVLKKYPSKFVGCCLANPAE 145 (342)
Q Consensus 92 ~~~~~ll~~md~~GI~~~v~~~~~~~~~~N~~~~~~~~~~p~r~~g~~~i~p~~ 145 (342)
.-.|++...++..|+..++-+... .+ -.-+...+-+||+|+.|.+.||+.-
T Consensus 107 ~LAd~l~~VL~~f~lk~vIg~GvG-AG--AyIL~rFAl~hp~rV~GLvLIn~~~ 157 (326)
T KOG2931|consen 107 DLADMLPEVLDHFGLKSVIGMGVG-AG--AYILARFALNHPERVLGLVLINCDP 157 (326)
T ss_pred HHHHHHHHHHHhcCcceEEEeccc-cc--HHHHHHHHhcChhheeEEEEEecCC
Confidence 344667778999999998887632 12 2235677789999999999988764
No 227
>PF07071 DUF1341: Protein of unknown function (DUF1341); InterPro: IPR010763 Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.; PDB: 3NZR_D 3LM7_A 3M0Z_B 3M6Y_A 3N73_A 3MUX_A.
Probab=60.53 E-value=60 Score=28.27 Aligned_cols=75 Identities=17% Similarity=0.237 Sum_probs=45.2
Q ss_pred HHHHHHHHhcCCceEEEecCCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEEeccCC-CCCHHHHHHHHHhCCCCcEEecc
Q 019335 150 IKQLEQLILKDGFRAVRFNPYLWPSGQQMTNEVGKAMFSKAGELGVPVGFMCMKGL-NLHISEIEELCTEFPSTTVLLDH 228 (342)
Q Consensus 150 ~~eler~~~~~g~~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH~~~~~-~~~~~~l~~l~~~~P~lk~vl~H 228 (342)
++..-+++++.|...+|+.|.. |.. .-+++..+-+.|.++|+.+ -...|. -.+++++.+++.+- +++.|+.|
T Consensus 137 vetAiaml~dmG~~SiKffPm~---Gl~-~leE~~avAkA~a~~g~~l--EPTGGIdl~N~~~I~~i~l~a-Gv~~viPH 209 (218)
T PF07071_consen 137 VETAIAMLKDMGGSSIKFFPMG---GLK-HLEELKAVAKACARNGFTL--EPTGGIDLDNFEEIVKICLDA-GVEKVIPH 209 (218)
T ss_dssp HHHHHHHHHHTT--EEEE---T---TTT-THHHHHHHHHHHHHCT-EE--EEBSS--TTTHHHHHHHHHHT-T-S-B--E
T ss_pred HHHHHHHHHHcCCCeeeEeecC---Ccc-cHHHHHHHHHHHHHcCcee--CCcCCcCHHHHHHHHHHHHHc-CCCeeccc
Confidence 3555566688999999999863 322 3468999999999999998 333222 24567788888877 68889999
Q ss_pred cCC
Q 019335 229 LAF 231 (342)
Q Consensus 229 ~G~ 231 (342)
.-.
T Consensus 210 iYs 212 (218)
T PF07071_consen 210 IYS 212 (218)
T ss_dssp E-G
T ss_pred hhh
Confidence 764
No 228
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=60.12 E-value=53 Score=29.60 Aligned_cols=81 Identities=19% Similarity=0.209 Sum_probs=39.8
Q ss_pred hHHHHHHHHHhcCCceEEEec-CCCCCCCCcCC-------cHHHHHHHHHHhhhCCe-EEEEeccCCCCCH--------H
Q 019335 148 IGIKQLEQLILKDGFRAVRFN-PYLWPSGQQMT-------NEVGKAMFSKAGELGVP-VGFMCMKGLNLHI--------S 210 (342)
Q Consensus 148 ~~~~eler~~~~~g~~Gvk~~-~~~~~~g~~l~-------~~~~~~~~~~a~e~~lp-v~iH~~~~~~~~~--------~ 210 (342)
..++++++.+++.|+. +..+ +.... -...+ -..+...++.|+++|.+ |.+|.+....... .
T Consensus 45 ~~~~~l~~~~~~~gl~-ls~h~p~~~n-l~s~d~~~r~~~~~~l~~~i~~A~~lGa~~vv~h~g~~~~~~~e~~~~~~~~ 122 (273)
T smart00518 45 ETAEKFKEALKENNID-VSVHAPYLIN-LASPDKEKVEKSIERLIDEIKRCEELGIKALVFHPGSYLKQSKEEALNRIIE 122 (273)
T ss_pred HHHHHHHHHHHHcCCC-EEEECCceec-CCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHH
Confidence 3467777777777775 3333 22100 00011 12456677788888876 3455543211111 1
Q ss_pred HHHHHHHhCCCCcEEecccC
Q 019335 211 EIEELCTEFPSTTVLLDHLA 230 (342)
Q Consensus 211 ~l~~l~~~~P~lk~vl~H~G 230 (342)
.+.++++.-.++++.+.-+.
T Consensus 123 ~l~~l~~~~~gv~l~lEn~~ 142 (273)
T smart00518 123 SLNEVIDETKGVVILLETTA 142 (273)
T ss_pred HHHHHHhccCCcEEEEeccC
Confidence 23444443235777776554
No 229
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=60.10 E-value=1.3e+02 Score=27.15 Aligned_cols=135 Identities=13% Similarity=0.091 Sum_probs=71.1
Q ss_pred ChHHHHHHhHHCCCceEEEeCCCCCccchHHHHHHHHhCCC-cEEEEEEcCCCCcchHHHHHHHHHh---cCCceEEEec
Q 019335 93 HVDFLLQCMEEASVDGALIVQPINHKFDHSLVTSVLKKYPS-KFVGCCLANPAEDVIGIKQLEQLIL---KDGFRAVRFN 168 (342)
Q Consensus 93 ~~~~ll~~md~~GI~~~v~~~~~~~~~~N~~~~~~~~~~p~-r~~g~~~i~p~~~~~~~~eler~~~---~~g~~Gvk~~ 168 (342)
....+++.+++.||+..=+-.+.....+.+.+..+.+..|+ ++.+++ .+.. +.+++..+ ..|+..|++.
T Consensus 21 ~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~l~~~~~~~~~~~l~--r~~~-----~~v~~a~~~~~~~~~~~i~i~ 93 (268)
T cd07940 21 EKLEIARQLDELGVDVIEAGFPAASPGDFEAVKRIAREVLNAEICGLA--RAVK-----KDIDAAAEALKPAKVDRIHTF 93 (268)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHhCCCCEEEEEc--cCCH-----hhHHHHHHhCCCCCCCEEEEE
Confidence 34567788999999988664332222233444455444554 444443 3321 22333322 2237777765
Q ss_pred CCCC------CCCCcCCc--HHHHHHHHHHhhhCCeEEEEeccCCCCCHHHHHHHHHhC----CCCcEEecccCCCCC
Q 019335 169 PYLW------PSGQQMTN--EVGKAMFSKAGELGVPVGFMCMKGLNLHISEIEELCTEF----PSTTVLLDHLAFCKP 234 (342)
Q Consensus 169 ~~~~------~~g~~l~~--~~~~~~~~~a~e~~lpv~iH~~~~~~~~~~~l~~l~~~~----P~lk~vl~H~G~~~p 234 (342)
.... ..+....+ +...+..+++.++|+.|.+.+.+.....++.+.+++++. ++.--+.+..|...|
T Consensus 94 ~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~~~i~l~DT~G~~~P 171 (268)
T cd07940 94 IATSDIHLKYKLKKTREEVLERAVEAVEYAKSHGLDVEFSAEDATRTDLDFLIEVVEAAIEAGATTINIPDTVGYLTP 171 (268)
T ss_pred ecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEeeecCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCH
Confidence 3210 00111111 456688889999999988876554334555555555443 232234566666544
No 230
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=59.98 E-value=1.3e+02 Score=27.03 Aligned_cols=132 Identities=13% Similarity=0.152 Sum_probs=69.7
Q ss_pred HHHHHHhHHCCCceEEEeCCCCCccchHHHHHHHHhCCC-cEEEEEEcCCCCcchHHHHHHHHHhcCCceEEEecCCCCC
Q 019335 95 DFLLQCMEEASVDGALIVQPINHKFDHSLVTSVLKKYPS-KFVGCCLANPAEDVIGIKQLEQLILKDGFRAVRFNPYLWP 173 (342)
Q Consensus 95 ~~ll~~md~~GI~~~v~~~~~~~~~~N~~~~~~~~~~p~-r~~g~~~i~p~~~~~~~~eler~~~~~g~~Gvk~~~~~~~ 173 (342)
-.+++.+++.||+..=+--|.....+-+.+.++.+..++ ++..++. +. .+.+++. .+.|+..|++......
T Consensus 23 ~~i~~~L~~~Gv~~iE~g~p~~~~~~~e~~~~l~~~~~~~~~~~~~r--~~-----~~~v~~a-~~~g~~~i~i~~~~s~ 94 (259)
T cd07939 23 LAIARALDEAGVDEIEVGIPAMGEEEREAIRAIVALGLPARLIVWCR--AV-----KEDIEAA-LRCGVTAVHISIPVSD 94 (259)
T ss_pred HHHHHHHHHcCCCEEEEecCCCCHHHHHHHHHHHhcCCCCEEEEecc--CC-----HHHHHHH-HhCCcCEEEEEEecCH
Confidence 456778999999987663232211122344444443332 3333322 22 1335555 3567877776532100
Q ss_pred --CCCcCC------cHHHHHHHHHHhhhCCeEEEEeccCCCCCHHHHHHHHHh---C-CCCcEEecccCCCCC
Q 019335 174 --SGQQMT------NEVGKAMFSKAGELGVPVGFMCMKGLNLHISEIEELCTE---F-PSTTVLLDHLAFCKP 234 (342)
Q Consensus 174 --~g~~l~------~~~~~~~~~~a~e~~lpv~iH~~~~~~~~~~~l~~l~~~---~-P~lk~vl~H~G~~~p 234 (342)
....++ -+.+....++|.+.|+.|.+.+.+.....++.+.+++++ . ++.-.+.+..|...|
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~~~i~l~DT~G~~~P 167 (259)
T cd07939 95 IHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSVGAEDASRADPDFLIEFAEVAQEAGADRLRFADTVGILDP 167 (259)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEeeccCCCCCHHHHHHHHHHHHHCCCCEEEeCCCCCCCCH
Confidence 000111 135567888999999998888765543455555555443 3 333344566776554
No 231
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=59.62 E-value=72 Score=27.74 Aligned_cols=86 Identities=13% Similarity=0.036 Sum_probs=44.4
Q ss_pred CeeeeeeeccCCCCccCCCCCCCCCCCCCCCCChHHHHHHhHHCCCceEEEeCCCCCccchHHHHHHHHhCCCcEEEEEE
Q 019335 61 KIIDSHLHVWASPEEAADKFPYFPGQEPTLPGHVDFLLQCMEEASVDGALIVQPINHKFDHSLVTSVLKKYPSKFVGCCL 140 (342)
Q Consensus 61 ~iID~H~Hl~~~~~~~~~~~p~~~~~~~~~~~~~~~ll~~md~~GI~~~v~~~~~~~~~~N~~~~~~~~~~p~r~~g~~~ 140 (342)
.++|.|+|... .+.+.+++.+.+.|.+...+ ...........+.+.++++. .-.+. .
T Consensus 56 i~~D~k~~di~--------------------~~~~~~~~~~~~~gad~vtv-h~e~g~~~l~~~i~~~~~~g-~~~~v-~ 112 (215)
T PRK13813 56 VIADLKVADIP--------------------NTNRLICEAVFEAGAWGIIV-HGFTGRDSLKAVVEAAAESG-GKVFV-V 112 (215)
T ss_pred EEEEeeccccH--------------------HHHHHHHHHHHhCCCCEEEE-cCcCCHHHHHHHHHHHHhcC-CeEEE-E
Confidence 56799999431 13445557777889886554 33211112345566666663 22222 2
Q ss_pred cCCCCc---c---hHHHHHHHHHhcCCceEEEecC
Q 019335 141 ANPAED---V---IGIKQLEQLILKDGFRAVRFNP 169 (342)
Q Consensus 141 i~p~~~---~---~~~~eler~~~~~g~~Gvk~~~ 169 (342)
++|... + ..++.+-++..++|+.|.++.+
T Consensus 113 ~~~~~~~~~~~~~~~~~~v~~m~~e~G~~g~~~~~ 147 (215)
T PRK13813 113 VEMSHPGALEFIQPHADKLAKLAQEAGAFGVVAPA 147 (215)
T ss_pred EeCCCCCCCCCHHHHHHHHHHHHHHhCCCeEEECC
Confidence 233221 1 1234444444567877777553
No 232
>TIGR01856 hisJ_fam histidinol phosphate phosphatase HisJ family. This model represents the histidinol phosphate phosphatase HisJ of Bacillus subtilis, and related proteins from a number of species within a larger family of phosphatases in the PHP hydrolase family. HisJ catalyzes the penultimate step of histidine biosynthesis but shows no homology to the functionally equivalent sequence in E. coli, a domain of the bifunctional HisB protein. Note, however, that many species have two members and that Clostridium perfringens, predicted not to make histidine, has five members of this family; this family is designated subfamily rather than equivalog to indicate that members may not all act as HisJ.
Probab=58.60 E-value=45 Score=30.02 Aligned_cols=36 Identities=11% Similarity=0.043 Sum_probs=27.0
Q ss_pred eeeeeeccCCCCccCCCCCCCCCCCCCCCCChHHHHHHhHHCCCceEEEeC
Q 019335 63 IDSHLHVWASPEEAADKFPYFPGQEPTLPGHVDFLLQCMEEASVDGALIVQ 113 (342)
Q Consensus 63 ID~H~Hl~~~~~~~~~~~p~~~~~~~~~~~~~~~ll~~md~~GI~~~v~~~ 113 (342)
+|.|+|-..... -.++++++++...+.|++...+..
T Consensus 1 ~D~H~Ht~~s~d---------------~~~~~ee~v~~A~~~Gl~~i~~Td 36 (253)
T TIGR01856 1 RDGHSHSPFCAH---------------GTDTLEEVVQEAIQLGFEEICFTE 36 (253)
T ss_pred CCcccCcCCCCC---------------CCCCHHHHHHHHHHcCCCEEEecC
Confidence 588999743210 136799999999999999988763
No 233
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=58.46 E-value=74 Score=28.73 Aligned_cols=125 Identities=9% Similarity=0.024 Sum_probs=72.3
Q ss_pred hHHCCCceEEEeCCCC-Cccc-hHHHHHHHHhCCCcEEEEEEcCCCC-----cch----HHHHHHHHHhcCCceEEEecC
Q 019335 101 MEEASVDGALIVQPIN-HKFD-HSLVTSVLKKYPSKFVGCCLANPAE-----DVI----GIKQLEQLILKDGFRAVRFNP 169 (342)
Q Consensus 101 md~~GI~~~v~~~~~~-~~~~-N~~~~~~~~~~p~r~~g~~~i~p~~-----~~~----~~~eler~~~~~g~~Gvk~~~ 169 (342)
..+.|.++.=++..-. -+.. .--+++.+.++-+ +--++.|-|+. .++ ..+.++.+ ++.|+.||.+..
T Consensus 17 A~~~GAdRiELc~~L~~GGlTPS~g~i~~~~~~~~-ipv~vMIRPR~gdF~Ys~~E~~~M~~di~~~-~~~GadGvV~G~ 94 (248)
T PRK11572 17 AQQAGADRIELCAAPKEGGLTPSLGVLKSVRERVT-IPVHPIIRPRGGDFCYSDGEFAAMLEDIATV-RELGFPGLVTGV 94 (248)
T ss_pred HHHcCCCEEEEccCcCCCCcCCCHHHHHHHHHhcC-CCeEEEEecCCCCCCCCHHHHHHHHHHHHHH-HHcCCCEEEEee
Confidence 4567999887764311 1110 1123444444322 33356777763 222 22334444 578999999875
Q ss_pred CCCCCCCcCCcHHHHHHHHHHhhhCCeEEEEeccCCCCCHHHHHHHHHhCCCCcEEecccCCC
Q 019335 170 YLWPSGQQMTNEVGKAMFSKAGELGVPVGFMCMKGLNLHISEIEELCTEFPSTTVLLDHLAFC 232 (342)
Q Consensus 170 ~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH~~~~~~~~~~~l~~l~~~~P~lk~vl~H~G~~ 232 (342)
.. ....+|-+.+..+.+.|. ++++.||-.-..-.++....+.+.++ ++.=|+.|.|..
T Consensus 95 L~--~dg~vD~~~~~~Li~~a~--~~~vTFHRAfD~~~d~~~al~~l~~l-G~~rILTSGg~~ 152 (248)
T PRK11572 95 LD--VDGHVDMPRMRKIMAAAG--PLAVTFHRAFDMCANPLNALKQLADL-GVARILTSGQQQ 152 (248)
T ss_pred EC--CCCCcCHHHHHHHHHHhc--CCceEEechhhccCCHHHHHHHHHHc-CCCEEECCCCCC
Confidence 42 234688889999999994 89999996421112333333444445 677789888863
No 234
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
Probab=58.26 E-value=33 Score=33.92 Aligned_cols=59 Identities=27% Similarity=0.249 Sum_probs=46.0
Q ss_pred cCCCCcchHHHHHHHHHhcCCceEEEecCCCC-CCCCcCCcHHHHHHHHHHhhhCCeEEE
Q 019335 141 ANPAEDVIGIKQLEQLILKDGFRAVRFNPYLW-PSGQQMTNEVGKAMFSKAGELGVPVGF 199 (342)
Q Consensus 141 i~p~~~~~~~~eler~~~~~g~~Gvk~~~~~~-~~g~~l~~~~~~~~~~~a~e~~lpv~i 199 (342)
|+.++..-..+.|++.++....+.+-+.|..+ |.|..+..++=..+++.|+++|+.|.=
T Consensus 206 vp~d~~G~~~e~le~~~~~~~~k~~y~~P~~qNPtG~tms~~rR~~Ll~lA~~~~~~IIE 265 (459)
T COG1167 206 VPVDEDGIDPEALEEALAQWKPKAVYVTPTFQNPTGVTMSLERRKALLALAEKYDVLIIE 265 (459)
T ss_pred cCCCCCCCCHHHHHHHHhhcCCcEEEECCCCCCCCCCccCHHHHHHHHHHHHHcCCeEEe
Confidence 34444333467888887777888888888764 678889999999999999999999953
No 235
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=57.90 E-value=42 Score=26.55 Aligned_cols=65 Identities=14% Similarity=0.095 Sum_probs=38.7
Q ss_pred CCCcEEEEEEcCCCC--cchHHHHHHHHHhcCCceEEEecCCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEEec
Q 019335 131 YPSKFVGCCLANPAE--DVIGIKQLEQLILKDGFRAVRFNPYLWPSGQQMTNEVGKAMFSKAGELGVPVGFMCM 202 (342)
Q Consensus 131 ~p~r~~g~~~i~p~~--~~~~~~eler~~~~~g~~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH~~ 202 (342)
.++-|+-.......+ +++..+-++++ .+.|+.|+.+.... .+. +.-+.+.++|+++++|+..-..
T Consensus 41 ~~gElvlttg~~~~~~~~~~~~~~i~~L-~~~~~agL~i~~~~-----~~~-~iP~~~i~~A~~~~lPli~ip~ 107 (123)
T PF07905_consen 41 RGGELVLTTGYALRDDDEEELREFIREL-AEKGAAGLGIKTGR-----YLD-EIPEEIIELADELGLPLIEIPW 107 (123)
T ss_pred CCCeEEEECCcccCCCCHHHHHHHHHHH-HHCCCeEEEEeccC-----ccc-cCCHHHHHHHHHcCCCEEEeCC
Confidence 344455443333332 33233445555 68899998876431 111 2337899999999999987654
No 236
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=57.57 E-value=98 Score=29.54 Aligned_cols=105 Identities=15% Similarity=0.124 Sum_probs=64.0
Q ss_pred HHHHHHHhhhCCeEEEEeccCCCCCHHHHHHHHH---hCCCCcEEecccCCCCCC-CCchhhHhHHHHh---cccCCCcE
Q 019335 184 KAMFSKAGELGVPVGFMCMKGLNLHISEIEELCT---EFPSTTVLLDHLAFCKPP-SNDEESLAFSNLL---KLSRFPQV 256 (342)
Q Consensus 184 ~~~~~~a~e~~lpv~iH~~~~~~~~~~~l~~l~~---~~P~lk~vl~H~G~~~p~-~~~~~~~~~~~~~---~l~~~~Nv 256 (342)
.++++++.+.|.||.+=.+-. ..+.++...++ ..-+-+++++|+|.-.-. .-......+..+. ++...| |
T Consensus 198 ~~LL~~va~t~kPVllk~G~~--~t~ee~~~A~e~i~~~Gn~~viL~erG~rtf~s~y~~~~~dl~ai~~lk~~~~lP-V 274 (352)
T PRK13396 198 FSLLKKVGAQDKPVLLKRGMA--ATIDEWLMAAEYILAAGNPNVILCERGIRTFDRQYTRNTLDLSVIPVLRSLTHLP-I 274 (352)
T ss_pred HHHHHHHHccCCeEEEeCCCC--CCHHHHHHHHHHHHHcCCCeEEEEecCCccCcCCCCCCCcCHHHHHHHHHhhCCC-E
Confidence 688999999999999876632 24555544433 345667999999872110 0012223444433 344566 9
Q ss_pred EEecCcccccccCCCCCCCchhHHHHHHHhcCCCcEEEccCC
Q 019335 257 YVKFSALFRVSRMPFPYQDLSSPLSQVVSSFGANRVMWGSDF 298 (342)
Q Consensus 257 y~~~S~~~~~~~~~~~~~~~~~~l~~~i~~~G~dRilfGSD~ 298 (342)
.+|.|.....+ +..+.+..+.-.+|+|=++..+.+
T Consensus 275 i~DpsH~~G~s-------d~~~~~a~AAva~GAdGliIE~H~ 309 (352)
T PRK13396 275 MIDPSHGTGKS-------EYVPSMAMAAIAAGTDSLMIEVHP 309 (352)
T ss_pred EECCcccCCcH-------HHHHHHHHHHHhhCCCeEEEEecC
Confidence 99999543222 122344455556799999999864
No 237
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=57.37 E-value=36 Score=31.00 Aligned_cols=127 Identities=17% Similarity=0.209 Sum_probs=72.9
Q ss_pred hHHHHHHhHHCCCceEEEeCCCCCccchHHHHHHHHh-CCCcEEEEEEc--CC-CC------cchHHHHHHHHHhcCCce
Q 019335 94 VDFLLQCMEEASVDGALIVQPINHKFDHSLVTSVLKK-YPSKFVGCCLA--NP-AE------DVIGIKQLEQLILKDGFR 163 (342)
Q Consensus 94 ~~~ll~~md~~GI~~~v~~~~~~~~~~N~~~~~~~~~-~p~r~~g~~~i--~p-~~------~~~~~~eler~~~~~g~~ 163 (342)
.+++++.+.+.+|++.|+... ..+++.+..+.+. .| ++-+... ++ .. ..++..++-+.+.+.|.+
T Consensus 45 ~e~~i~~l~~~~vDGiI~~s~---~~~~~~l~~~~~~~iP--vV~~~~~~~~~~~~~~V~~D~~~a~~~a~~~Li~~Gh~ 119 (279)
T PF00532_consen 45 KEEYIELLLQRRVDGIILASS---ENDDEELRRLIKSGIP--VVLIDRYIDNPEGVPSVYIDNYEAGYEATEYLIKKGHR 119 (279)
T ss_dssp HHHHHHHHHHTTSSEEEEESS---SCTCHHHHHHHHTTSE--EEEESS-SCTTCTSCEEEEEHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHhcCCCEEEEecc---cCChHHHHHHHHcCCC--EEEEEeccCCcccCCEEEEcchHHHHHHHHHHHhcccC
Confidence 347888999999999998843 2225667776666 23 3322111 22 11 112333444444567776
Q ss_pred E-EEecCCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEE-eccCC---CCCHHHHHHHHHhCCCCcEEec
Q 019335 164 A-VRFNPYLWPSGQQMTNEVGKAMFSKAGELGVPVGFM-CMKGL---NLHISEIEELCTEFPSTTVLLD 227 (342)
Q Consensus 164 G-vk~~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH-~~~~~---~~~~~~l~~l~~~~P~lk~vl~ 227 (342)
= |.+.... ........+..-+.++++++|+++.-. +..+. ......+.+++++.|++..|++
T Consensus 120 ~~I~~i~~~--~~~~~~~~R~~Gy~~Al~~~Gl~~~~~~i~~~~~~~~~g~~~~~~ll~~~p~idai~~ 186 (279)
T PF00532_consen 120 RPIAFIGGP--EDSSTSRERLQGYRDALKEAGLPIDEEWIFEGDFDYESGYEAARELLESHPDIDAIFC 186 (279)
T ss_dssp STEEEEEES--TTTHHHHHHHHHHHHHHHHTTSCEEEEEEEESSSSHHHHHHHHHHHHHTSTT-SEEEE
T ss_pred CeEEEEecC--cchHHHHHHHHHHHHHHHHcCCCCCcccccccCCCHHHHHHHHHHHHhhCCCCEEEEE
Confidence 6 6544321 122233567888999999999976332 22221 1123457889999999777775
No 238
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Probab=56.43 E-value=1.3e+02 Score=27.29 Aligned_cols=102 Identities=10% Similarity=0.051 Sum_probs=56.9
Q ss_pred ChHHHHHHhHHCCCceEEEeCCC---CC-------cc--chHHHHHHHHhC--CCcEEEEEEc---CCCCcchHHHHHHH
Q 019335 93 HVDFLLQCMEEASVDGALIVQPI---NH-------KF--DHSLVTSVLKKY--PSKFVGCCLA---NPAEDVIGIKQLEQ 155 (342)
Q Consensus 93 ~~~~ll~~md~~GI~~~v~~~~~---~~-------~~--~N~~~~~~~~~~--p~r~~g~~~i---~p~~~~~~~~eler 155 (342)
..+..+..+.+.||+..+++... .. .. +-..+++..+.. ++.-+|++.. ||...+ ...++++
T Consensus 74 ~l~~~L~~~~~~Gi~~iL~l~GD~~~~~~~~~~~~~~~~~a~~Li~~i~~~~~~~~~igva~yPe~hp~~~~-~~~~~~~ 152 (274)
T cd00537 74 ELQSILLGAHALGIRNILALRGDPPKGGDQPGAKPVGFVYAVDLVELIRKENGGGFSIGVAAYPEGHPEAPS-LEEDIKR 152 (274)
T ss_pred HHHHHHHHHHHCCCCeEEEeCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcCCCCccccccCCCcCCCCCC-HHHHHHH
Confidence 45666777889999999998431 11 11 123456666653 3333444433 444332 3345555
Q ss_pred HHh--cCCceEEEecCCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEEec
Q 019335 156 LIL--KDGFRAVRFNPYLWPSGQQMTNEVGKAMFSKAGELGVPVGFMCM 202 (342)
Q Consensus 156 ~~~--~~g~~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH~~ 202 (342)
+.+ +.|..-+--. .-++-+.+..+.+.|++.|+.+-|+.+
T Consensus 153 L~~Ki~aGA~f~iTQ-------~~fd~~~~~~~~~~~~~~gi~vPIi~G 194 (274)
T cd00537 153 LKRKVDAGADFIITQ-------LFFDNDAFLRFVDRCRAAGITVPIIPG 194 (274)
T ss_pred HHHHHHCCCCEEeec-------ccccHHHHHHHHHHHHHcCCCCCEEee
Confidence 533 2354333211 224557899999999999854444554
No 239
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=56.28 E-value=1.5e+02 Score=26.68 Aligned_cols=137 Identities=15% Similarity=0.035 Sum_probs=78.2
Q ss_pred CChHHHHHHhHHCCCceEEEeCCCC------Cccc---hHHHHHHHHhCCCcEEEEEE-----cCCCC--c---chHHHH
Q 019335 92 GHVDFLLQCMEEASVDGALIVQPIN------HKFD---HSLVTSVLKKYPSKFVGCCL-----ANPAE--D---VIGIKQ 152 (342)
Q Consensus 92 ~~~~~ll~~md~~GI~~~v~~~~~~------~~~~---N~~~~~~~~~~p~r~~g~~~-----i~p~~--~---~~~~~e 152 (342)
.+.++.++.+.+.|.++.=+..... .... -..+.+.++++.=++.+++. .+... + +..++.
T Consensus 16 ~~~~e~l~~~~~~G~~~VEl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~~~~~~~~~~l~~~~~~~r~~~~~~ 95 (279)
T TIGR00542 16 ECWLERLQLAKTCGFDFVEMSVDETDDRLSRLDWSREQRLALVNAIIETGVRIPSMCLSAHRRFPLGSKDKAVRQQGLEI 95 (279)
T ss_pred CCHHHHHHHHHHcCCCEEEEecCCccchhhccCCCHHHHHHHHHHHHHcCCCceeeecCCCccCcCCCcCHHHHHHHHHH
Confidence 5789999999999999986642211 1111 23445556666434444431 12221 1 123334
Q ss_pred HHHH---HhcCCceEEEecCCCCCCCCcC------CcHHHHHHHHHHhhhCCeEEEEeccCC-CCCHHHHHHHHHh--CC
Q 019335 153 LEQL---ILKDGFRAVRFNPYLWPSGQQM------TNEVGKAMFSKAGELGVPVGFMCMKGL-NLHISEIEELCTE--FP 220 (342)
Q Consensus 153 ler~---~~~~g~~Gvk~~~~~~~~g~~l------~~~~~~~~~~~a~e~~lpv~iH~~~~~-~~~~~~l~~l~~~--~P 220 (342)
+++. +++.|..-|.+.......+... --+.+..+.+.|+++|+.+.+|...+. -..+.++.++++. .|
T Consensus 96 ~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~A~~~Gv~l~lE~~~~~~~~t~~~~~~li~~v~~~ 175 (279)
T TIGR00542 96 MEKAIQLARDLGIRTIQLAGYDVYYEEHDEETRRRFREGLKEAVELAARAQVTLAVEIMDTPFMSSISKWLKWDHYLNSP 175 (279)
T ss_pred HHHHHHHHHHhCCCEEEecCcccccCcCCHHHHHHHHHHHHHHHHHHHHcCCEEEEeeCCCchhcCHHHHHHHHHHcCCC
Confidence 4443 3567888887764311111110 114667888899999999999975321 1234566667765 48
Q ss_pred CCcEEecc
Q 019335 221 STTVLLDH 228 (342)
Q Consensus 221 ~lk~vl~H 228 (342)
.++++++-
T Consensus 176 ~v~~~~D~ 183 (279)
T TIGR00542 176 WFTLYPDI 183 (279)
T ss_pred ceEEEeCc
Confidence 88888753
No 240
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=56.14 E-value=1.3e+02 Score=27.84 Aligned_cols=125 Identities=16% Similarity=0.113 Sum_probs=70.5
Q ss_pred HHHHHHhHHCCCceEEEeCCCCCccchHHHHHHHHhCCCcEEE---EEEcCCCCcchHHHHHHHHHhcCCceEEEecCCC
Q 019335 95 DFLLQCMEEASVDGALIVQPINHKFDHSLVTSVLKKYPSKFVG---CCLANPAEDVIGIKQLEQLILKDGFRAVRFNPYL 171 (342)
Q Consensus 95 ~~ll~~md~~GI~~~v~~~~~~~~~~N~~~~~~~~~~p~r~~g---~~~i~p~~~~~~~~eler~~~~~g~~Gvk~~~~~ 171 (342)
-+.++++-+.||..+|++...+...+.+.+.+.++++.=|++| +..++|...-.. -+-......|= |-+...
T Consensus 79 ~~~l~e~~~~gvk~avI~s~Gf~~~~~~~l~~~a~~~girvlGPNc~Gi~~~~~~~~~--~~~~~~~~~G~--valiSQ- 153 (291)
T PRK05678 79 ADAILEAIDAGIDLIVCITEGIPVLDMLEVKAYLERKKTRLIGPNCPGIITPGECKIG--IMPGHIHKKGR--VGVVSR- 153 (291)
T ss_pred HHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCEEECCCCCcccccccceee--ecCCCCCCCCC--EEEEec-
Confidence 4556667778888888876543222223677777777656765 345566432100 00000011221 222211
Q ss_pred CCCCCcCCcHHHHHHHHHHhhhCCeEEE--EeccC--CCCCHHHHHHHHHhCCCCcEEecccCC
Q 019335 172 WPSGQQMTNEVGKAMFSKAGELGVPVGF--MCMKG--LNLHISEIEELCTEFPSTTVLLDHLAF 231 (342)
Q Consensus 172 ~~~g~~l~~~~~~~~~~~a~e~~lpv~i--H~~~~--~~~~~~~l~~l~~~~P~lk~vl~H~G~ 231 (342)
.......+++.+.+.|+-+.. -+|.. ......++.+.+..=|++++|+-++=.
T Consensus 154 -------SGal~~~~~~~~~~~giG~s~~Vs~Gn~~~~dv~~~D~l~~l~~Dp~T~~I~lylE~ 210 (291)
T PRK05678 154 -------SGTLTYEAVAQLTDLGFGQSTCVGIGGDPINGTNFIDVLEAFEEDPETEAIVMIGEI 210 (291)
T ss_pred -------cHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCCCCHHHHHHHHhhCCCCcEEEEEEec
Confidence 112345678888888886643 44432 114567888888888999999988764
No 241
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=56.01 E-value=34 Score=31.80 Aligned_cols=69 Identities=20% Similarity=0.217 Sum_probs=38.7
Q ss_pred HHHHHhHHCCCceEEEeCCCCCccchHHH----HHHHHhCCCcEEEEEEcC-CCCcchHHHHHHHHH-hcCCceEEEec
Q 019335 96 FLLQCMEEASVDGALIVQPINHKFDHSLV----TSVLKKYPSKFVGCCLAN-PAEDVIGIKQLEQLI-LKDGFRAVRFN 168 (342)
Q Consensus 96 ~ll~~md~~GI~~~v~~~~~~~~~~N~~~----~~~~~~~p~r~~g~~~i~-p~~~~~~~~eler~~-~~~g~~Gvk~~ 168 (342)
++.+...+.|++..++++|..+....+.+ .++++..+ .++...| |.. +-..+.+.+++ +.++++|||..
T Consensus 92 ~~~~~a~~~Gadav~~~pP~y~~~~~~~i~~~f~~va~~~~---lpi~lYn~~g~-~l~~~~l~~L~~~~pni~giK~s 166 (303)
T PRK03620 92 EYAQAAERAGADGILLLPPYLTEAPQEGLAAHVEAVCKSTD---LGVIVYNRDNA-VLTADTLARLAERCPNLVGFKDG 166 (303)
T ss_pred HHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCC---CCEEEEcCCCC-CCCHHHHHHHHhhCCCEEEEEeC
Confidence 34456678899999888875444333333 33444332 1222222 321 11345677776 55789999965
No 242
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=55.81 E-value=70 Score=30.27 Aligned_cols=191 Identities=18% Similarity=0.196 Sum_probs=86.1
Q ss_pred HHHhHHCCCceEEEeCCCCCccchHHHHHHHHhCCCcE-EEEEEcCCCC-----cchHHHHHHHHHhcCCceE-EEecCC
Q 019335 98 LQCMEEASVDGALIVQPINHKFDHSLVTSVLKKYPSKF-VGCCLANPAE-----DVIGIKQLEQLILKDGFRA-VRFNPY 170 (342)
Q Consensus 98 l~~md~~GI~~~v~~~~~~~~~~N~~~~~~~~~~p~r~-~g~~~i~p~~-----~~~~~~eler~~~~~g~~G-vk~~~~ 170 (342)
+..|++.|+. .-.. .+ ....+.++.+.+.=.. +-=..++|.+ .+..++..+|. ++.|++= +.||-.
T Consensus 9 ~~~~E~~G~~---f~~~--~G-~~~d~~~ilk~~G~N~vRlRvwv~P~~~g~~~~~~~~~~akra-k~~Gm~vlldfHYS 81 (332)
T PF07745_consen 9 LPEMEAAGVK---FYDE--NG-QEKDLFQILKDHGVNAVRLRVWVNPYDGGYNDLEDVIALAKRA-KAAGMKVLLDFHYS 81 (332)
T ss_dssp HHHHHHTT------B-T--TS-SB--HHHHHHHTT--EEEEEE-SS-TTTTTTSHHHHHHHHHHH-HHTT-EEEEEE-SS
T ss_pred HHHHHHcCCe---EECC--CC-CCCCHHHHHHhcCCCeEEEEeccCCcccccCCHHHHHHHHHHH-HHCCCeEEEeeccc
Confidence 4567777774 1111 11 1245788888875322 2224678876 23345555555 7889864 456632
Q ss_pred -CCCC-C-C-----c--CCcHHH--------HHHHHHHhhhCCeE-EEEeccCC----------CCCHHH--------HH
Q 019335 171 -LWPS-G-Q-----Q--MTNEVG--------KAMFSKAGELGVPV-GFMCMKGL----------NLHISE--------IE 213 (342)
Q Consensus 171 -~~~~-g-~-----~--l~~~~~--------~~~~~~a~e~~lpv-~iH~~~~~----------~~~~~~--------l~ 213 (342)
.|.+ | + + ++..++ ..+++.+.+.|+.. ++.+|... ...... +.
T Consensus 82 D~WaDPg~Q~~P~aW~~~~~~~l~~~v~~yT~~vl~~l~~~G~~pd~VQVGNEin~Gmlwp~g~~~~~~~~a~ll~ag~~ 161 (332)
T PF07745_consen 82 DFWADPGKQNKPAAWANLSFDQLAKAVYDYTKDVLQALKAAGVTPDMVQVGNEINNGMLWPDGKPSNWDNLAKLLNAGIK 161 (332)
T ss_dssp SS--BTTB-B--TTCTSSSHHHHHHHHHHHHHHHHHHHHHTT--ESEEEESSSGGGESTBTTTCTT-HHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCccEEEeCccccccccCcCCCccCHHHHHHHHHHHHH
Confidence 2311 1 1 1 222222 35677888889887 66777421 122222 23
Q ss_pred HHHHhCCCCcEEecccCCCCCCCCchhhHhHHHHhcccCCCcEEEecCcccccccCCCCCCCchhHHHHHHHhcCCCcEE
Q 019335 214 ELCTEFPSTTVLLDHLAFCKPPSNDEESLAFSNLLKLSRFPQVYVKFSALFRVSRMPFPYQDLSSPLSQVVSSFGANRVM 293 (342)
Q Consensus 214 ~l~~~~P~lk~vl~H~G~~~p~~~~~~~~~~~~~~~l~~~~Nvy~~~S~~~~~~~~~~~~~~~~~~l~~~i~~~G~dRil 293 (342)
.+-+..|+.||++ |+..+. .......|-. .+... ++-+|+-|+-.+.--.-...++...++.+.+++|.+=++
T Consensus 162 AVr~~~p~~kV~l-H~~~~~---~~~~~~~~f~--~l~~~-g~d~DviGlSyYP~w~~~l~~l~~~l~~l~~ry~K~V~V 234 (332)
T PF07745_consen 162 AVREVDPNIKVML-HLANGG---DNDLYRWFFD--NLKAA-GVDFDVIGLSYYPFWHGTLEDLKNNLNDLASRYGKPVMV 234 (332)
T ss_dssp HHHTHSSTSEEEE-EES-TT---SHHHHHHHHH--HHHHT-TGG-SEEEEEE-STTST-HHHHHHHHHHHHHHHT-EEEE
T ss_pred HHHhcCCCCcEEE-EECCCC---chHHHHHHHH--HHHhc-CCCcceEEEecCCCCcchHHHHHHHHHHHHHHhCCeeEE
Confidence 4455789999877 766532 1111112211 12222 244444443111000002334556778888899887788
Q ss_pred EccCCCCCC
Q 019335 294 WGSDFPYVV 302 (342)
Q Consensus 294 fGSD~P~~~ 302 (342)
-.|.||+..
T Consensus 235 ~Et~yp~t~ 243 (332)
T PF07745_consen 235 VETGYPWTL 243 (332)
T ss_dssp EEE---SBS
T ss_pred Eeccccccc
Confidence 899999983
No 243
>PLN02522 ATP citrate (pro-S)-lyase
Probab=54.66 E-value=1.5e+02 Score=30.48 Aligned_cols=52 Identities=6% Similarity=0.050 Sum_probs=30.7
Q ss_pred ChHHHHHHhHHCCCceEEEeCCCCCccchHHHHHHHHhCCCcEEE---EEEcCCC
Q 019335 93 HVDFLLQCMEEASVDGALIVQPINHKFDHSLVTSVLKKYPSKFVG---CCLANPA 144 (342)
Q Consensus 93 ~~~~ll~~md~~GI~~~v~~~~~~~~~~N~~~~~~~~~~p~r~~g---~~~i~p~ 144 (342)
-.|..++.+++.||..+|++.......+-..+.+.++++.-|++| .+.++|.
T Consensus 91 a~da~lEa~~a~GIk~~VIiteGfpe~d~~~l~~~Ar~~g~rlIGPNc~Gii~p~ 145 (608)
T PLN02522 91 AAASSMEALKQPTIRVVAIIAEGVPESDTKQLIAYARANNKVVIGPATVGGIQAG 145 (608)
T ss_pred hHHHHHHHHhhCCCCEEEEECCCCChhhHHHHHHHHHHcCCEEECCCCCeeEccC
Confidence 346667777777777777765433223345666777766656664 2345553
No 244
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=54.54 E-value=1.2e+02 Score=28.03 Aligned_cols=115 Identities=9% Similarity=0.002 Sum_probs=61.8
Q ss_pred ChHHHHHHhHHCCCceEEEeCCCC-----Cc-cchHHHHHHHHhCCCcEEEEEE---cCCCCcchHHHHHHHHHh--cCC
Q 019335 93 HVDFLLQCMEEASVDGALIVQPIN-----HK-FDHSLVTSVLKKYPSKFVGCCL---ANPAEDVIGIKQLEQLIL--KDG 161 (342)
Q Consensus 93 ~~~~ll~~md~~GI~~~v~~~~~~-----~~-~~N~~~~~~~~~~p~r~~g~~~---i~p~~~~~~~~eler~~~--~~g 161 (342)
.++..+..+.+.||+..+++.... .. .....++++.++..+.-++++. .||.-++ ...+++++.+ +.|
T Consensus 98 ~l~~~L~~~~~~GI~niLaLrGD~p~~~~~~~~~a~dLv~li~~~~~~~i~va~yPeghp~~~~-~~~dl~~Lk~K~~aG 176 (296)
T PRK09432 98 ELRTIAKDYWNNGIRHIVALRGDLPPGSGKPEMYASDLVTLLKSVADFDISVAAYPEVHPEAKS-AQADLINLKRKVDAG 176 (296)
T ss_pred HHHHHHHHHHHCCCCEEEEeCCCCCCCCCCCCcCHHHHHHHHHHhCCCccceeeCCCCCCCCCC-HHHHHHHHHHHHHcC
Confidence 345566778999999999985321 11 1122566677776543234433 3444332 2234444321 346
Q ss_pred ceEEEecCCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEEeccCCCCCHHHHHHH
Q 019335 162 FRAVRFNPYLWPSGQQMTNEVGKAMFSKAGELGVPVGFMCMKGLNLHISEIEEL 215 (342)
Q Consensus 162 ~~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH~~~~~~~~~~~l~~l 215 (342)
...+- . -..++.+.+..+.+.|++.|+-+=|+.|--+......+..+
T Consensus 177 A~~~i--T-----Q~~Fd~~~~~~f~~~~~~~Gi~vPIi~GI~pi~s~~~~~~~ 223 (296)
T PRK09432 177 ANRAI--T-----QFFFDVESYLRFRDRCVSAGIDVEIVPGILPVSNFKQLKKF 223 (296)
T ss_pred CCeee--c-----ccccchHHHHHHHHHHHHcCCCCCEEeeccccCCHHHHHHH
Confidence 54221 1 13456788999999999998444445553222333444444
No 245
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=54.40 E-value=2e+02 Score=27.30 Aligned_cols=104 Identities=20% Similarity=0.186 Sum_probs=60.5
Q ss_pred HHHHHHHhhhCCeEEEEeccCCCCCHHHHHH---HHHhCCCCcEEecccCC-CCCCCCchhhHhHHHHh---cccCCCcE
Q 019335 184 KAMFSKAGELGVPVGFMCMKGLNLHISEIEE---LCTEFPSTTVLLDHLAF-CKPPSNDEESLAFSNLL---KLSRFPQV 256 (342)
Q Consensus 184 ~~~~~~a~e~~lpv~iH~~~~~~~~~~~l~~---l~~~~P~lk~vl~H~G~-~~p~~~~~~~~~~~~~~---~l~~~~Nv 256 (342)
.++++.+.+.|.||.+=.+.. ..+.++.. .+...-+-++++.|+|. .++.. ......+..+. ++...| |
T Consensus 190 ~~LL~~va~~~kPViLk~G~~--~ti~E~l~A~e~i~~~GN~~viL~erG~~tf~~~-~~~~ldl~ai~~lk~~~~lP-V 265 (335)
T PRK08673 190 FDLLKEVGKTNKPVLLKRGMS--ATIEEWLMAAEYILAEGNPNVILCERGIRTFETA-TRNTLDLSAVPVIKKLTHLP-V 265 (335)
T ss_pred HHHHHHHHcCCCcEEEeCCCC--CCHHHHHHHHHHHHHcCCCeEEEEECCCCCCCCc-ChhhhhHHHHHHHHHhcCCC-E
Confidence 689999999999999876632 24444443 34444456789999987 33211 12223344332 233455 7
Q ss_pred EEecCcccccccCCCCCCCchhHHHHHHHhcCCCcEEEccCC
Q 019335 257 YVKFSALFRVSRMPFPYQDLSSPLSQVVSSFGANRVMWGSDF 298 (342)
Q Consensus 257 y~~~S~~~~~~~~~~~~~~~~~~l~~~i~~~G~dRilfGSD~ 298 (342)
-+|.|..... .+..+.+..+.-..|+|=++....+
T Consensus 266 i~d~sH~~G~-------~~~v~~~a~AAvA~GAdGliIE~H~ 300 (335)
T PRK08673 266 IVDPSHATGK-------RDLVEPLALAAVAAGADGLIVEVHP 300 (335)
T ss_pred EEeCCCCCcc-------ccchHHHHHHHHHhCCCEEEEEecC
Confidence 6777654221 1122344455556799988888754
No 246
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=53.74 E-value=1.6e+02 Score=26.15 Aligned_cols=131 Identities=13% Similarity=-0.017 Sum_probs=64.6
Q ss_pred CChHHHHHHhHHCC--CceEEEeCCCCCccchHHHHHHHHhCCCcEEEEEEcCC--------CC----cchHHHHHHHHH
Q 019335 92 GHVDFLLQCMEEAS--VDGALIVQPINHKFDHSLVTSVLKKYPSKFVGCCLANP--------AE----DVIGIKQLEQLI 157 (342)
Q Consensus 92 ~~~~~ll~~md~~G--I~~~v~~~~~~~~~~N~~~~~~~~~~p~r~~g~~~i~p--------~~----~~~~~~eler~~ 157 (342)
.+..++++.+.+.+ +..++++... .+.+..+.+...+++.-+...+. .. .+...+.++..
T Consensus 51 ~~~~~~i~~l~~~~~~~~~~~l~~~~-----~~~i~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a- 124 (265)
T cd03174 51 EDDWEVLRAIRKLVPNVKLQALVRNR-----EKGIERALEAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAA- 124 (265)
T ss_pred CCHHHHHHHHHhccCCcEEEEEccCc-----hhhHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHH-
Confidence 45667777777765 5444444321 33344444433344443333331 11 12222333333
Q ss_pred hcCCceEEEecCCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEEecc-C--CCCCH-HHHHHHHHhCCCCcEEecccCC
Q 019335 158 LKDGFRAVRFNPYLWPSGQQMTNEVGKAMFSKAGELGVPVGFMCMK-G--LNLHI-SEIEELCTEFPSTTVLLDHLAF 231 (342)
Q Consensus 158 ~~~g~~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH~~~-~--~~~~~-~~l~~l~~~~P~lk~vl~H~G~ 231 (342)
++.|+. +.+..... .+...+...+..+.+.+.++|.-....+.. | .|.++ ..+..+.+++|++.+.+ |+-.
T Consensus 125 ~~~G~~-v~~~~~~~-~~~~~~~~~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~v~~li~~l~~~~~~~~~~~-H~Hn 199 (265)
T cd03174 125 KEAGLE-VEGSLEDA-FGCKTDPEYVLEVAKALEEAGADEISLKDTVGLATPEEVAELVKALREALPDVPLGL-HTHN 199 (265)
T ss_pred HHCCCe-EEEEEEee-cCCCCCHHHHHHHHHHHHHcCCCEEEechhcCCcCHHHHHHHHHHHHHhCCCCeEEE-EeCC
Confidence 456654 33332110 011256677889999999999765444321 1 12222 23556667788776655 7743
No 247
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=53.49 E-value=1.8e+02 Score=26.65 Aligned_cols=122 Identities=20% Similarity=0.145 Sum_probs=69.8
Q ss_pred HHHHHHhcCCceEEEecCCCCCCCCcCCcHHHHHHHHHHhhh---CCeEEEEeccCC----------------------C
Q 019335 152 QLEQLILKDGFRAVRFNPYLWPSGQQMTNEVGKAMFSKAGEL---GVPVGFMCMKGL----------------------N 206 (342)
Q Consensus 152 eler~~~~~g~~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e~---~lpv~iH~~~~~----------------------~ 206 (342)
.++++ .+.|+.||-+.... .....++.++...+++.+.+. ++||.++++.+. |
T Consensus 26 l~~~l-~~~Gv~gi~v~Gst-GE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~~~t~~~i~~a~~a~~~Gad~v~~~pP 103 (289)
T cd00951 26 HVEWL-LSYGAAALFAAGGT-GEFFSLTPDEYAQVVRAAVEETAGRVPVLAGAGYGTATAIAYAQAAEKAGADGILLLPP 103 (289)
T ss_pred HHHHH-HHcCCCEEEECcCC-cCcccCCHHHHHHHHHHHHHHhCCCCCEEEecCCCHHHHHHHHHHHHHhCCCEEEECCC
Confidence 44444 46799999877543 224567888888888776664 589988876321 1
Q ss_pred C----C----HHHHHHHHHhCCCCcEEecccCCCCCCCCchhhHhHHHHhcccC-CCcE-EEecCcccccccCCCCCCCc
Q 019335 207 L----H----ISEIEELCTEFPSTTVLLDHLAFCKPPSNDEESLAFSNLLKLSR-FPQV-YVKFSALFRVSRMPFPYQDL 276 (342)
Q Consensus 207 ~----~----~~~l~~l~~~~P~lk~vl~H~G~~~p~~~~~~~~~~~~~~~l~~-~~Nv-y~~~S~~~~~~~~~~~~~~~ 276 (342)
. . ...+..+++.. ++.+++-+..+.. + .-+.+.+|++ +||| .+|-|.- ++
T Consensus 104 ~y~~~~~~~i~~~f~~v~~~~-~~pi~lYn~~g~~--l------~~~~l~~L~~~~pnivgiKds~~-----------d~ 163 (289)
T cd00951 104 YLTEAPQEGLYAHVEAVCKST-DLGVIVYNRANAV--L------TADSLARLAERCPNLVGFKDGVG-----------DI 163 (289)
T ss_pred CCCCCCHHHHHHHHHHHHhcC-CCCEEEEeCCCCC--C------CHHHHHHHHhcCCCEEEEEeCCC-----------CH
Confidence 0 0 12455666654 5777777642211 1 1123456776 8894 7776532 11
Q ss_pred hhHHHHHHHhcCCC-cEEEcc
Q 019335 277 SSPLSQVVSSFGAN-RVMWGS 296 (342)
Q Consensus 277 ~~~l~~~i~~~G~d-RilfGS 296 (342)
..+.++++..+.+ +++.|+
T Consensus 164 -~~~~~~~~~~~~~~~v~~G~ 183 (289)
T cd00951 164 -ELMRRIVAKLGDRLLYLGGL 183 (289)
T ss_pred -HHHHHHHHhcCCCeEEEeCC
Confidence 3455566666533 556675
No 248
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=53.36 E-value=1.8e+02 Score=26.53 Aligned_cols=20 Identities=15% Similarity=0.084 Sum_probs=11.5
Q ss_pred CCcHHHHHHHHHHhhhCCeE
Q 019335 178 MTNEVGKAMFSKAGELGVPV 197 (342)
Q Consensus 178 l~~~~~~~~~~~a~e~~lpv 197 (342)
.+.+.+..+.+.+.+.|.-.
T Consensus 146 ~~~~~~~~~~~~~~~~Ga~~ 165 (275)
T cd07937 146 HTLEYYVKLAKELEDMGADS 165 (275)
T ss_pred CCHHHHHHHHHHHHHcCCCE
Confidence 34455566666666666444
No 249
>COG1228 HutI Imidazolonepropionase and related amidohydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=52.78 E-value=2.3e+02 Score=27.60 Aligned_cols=138 Identities=15% Similarity=0.089 Sum_probs=70.9
Q ss_pred CCcCCcHHHHHHHHHHhhhCCeEEEEeccCCCCCHHHHHHHHHhCCCCcEEecccCCCCCCCCchhhHhHHHHhcccC-C
Q 019335 175 GQQMTNEVGKAMFSKAGELGVPVGFMCMKGLNLHISEIEELCTEFPSTTVLLDHLAFCKPPSNDEESLAFSNLLKLSR-F 253 (342)
Q Consensus 175 g~~l~~~~~~~~~~~a~e~~lpv~iH~~~~~~~~~~~l~~l~~~~P~lk~vl~H~G~~~p~~~~~~~~~~~~~~~l~~-~ 253 (342)
+..+..++...+++.+.+.|+||-+|.... + -..++-+.. . ..++|+-... +.....+++ .
T Consensus 214 ~~~fs~~e~~~~l~~a~~~g~~v~~HA~~~-----~-g~~~A~~~g-~-~s~~H~~~ld----------~~~~~~~a~~~ 275 (406)
T COG1228 214 GGQFSPEEIRAVLAAALKAGIPVKAHAHGA-----D-GIKLAIRLG-A-KSAEHGTLLD----------HETAALLAEKG 275 (406)
T ss_pred ccccCHHHHHHHHHHHHHCCCceEEEeccc-----c-hHHHHHHhC-c-ceehhhhhcC----------HhHHHHHhhcc
Confidence 455677888999999999999999998743 1 333444442 2 2566765421 111111222 0
Q ss_pred CcE-E-EecCcccccccCCCCCCCchhHHHHHHHhcCCCcEEEccCCCCCCCCCChHhHHHHHHHHHhcCCCCHHHHHHH
Q 019335 254 PQV-Y-VKFSALFRVSRMPFPYQDLSSPLSQVVSSFGANRVMWGSDFPYVVPECGYKGGREAASLIANEVPLSPSELEWI 331 (342)
Q Consensus 254 ~Nv-y-~~~S~~~~~~~~~~~~~~~~~~l~~~i~~~G~dRilfGSD~P~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~I 331 (342)
-+. + .-+.+....-. +...+-++.+++. | =+|-+|||.|.... .......+...+. .+++.+|.=+-
T Consensus 276 ~g~~~~~l~p~~~~~l~-----e~~~~~~~~l~~~-G-V~vai~TD~~~~~~---~~~l~~~m~l~~~-~gmtp~EaL~a 344 (406)
T COG1228 276 AGTPVPVLLPRTKFELR-----ELDYKPARKLIDA-G-VKVAIGTDHNPGTS---HGSLALEMALAVR-LGMTPEEALKA 344 (406)
T ss_pred CCCccccccchhhhhhh-----cccchhHHHHHHC-C-CEEEEEcCCCCCch---hhHHHHHHHHHHH-cCCCHHHHHHH
Confidence 011 1 11111100000 0111335666555 3 47889999988752 2222223333333 45877665555
Q ss_pred HhHHHHHhcC
Q 019335 332 MGGTIMQLFQ 341 (342)
Q Consensus 332 ~~~NA~rl~~ 341 (342)
.--||.+.+|
T Consensus 345 ~T~naA~alG 354 (406)
T COG1228 345 ATINAAKALG 354 (406)
T ss_pred HHHHHHHHcC
Confidence 5556665553
No 250
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=52.64 E-value=1.6e+02 Score=25.80 Aligned_cols=19 Identities=21% Similarity=0.085 Sum_probs=13.7
Q ss_pred HHHHHHhHHCCCceEEEeC
Q 019335 95 DFLLQCMEEASVDGALIVQ 113 (342)
Q Consensus 95 ~~ll~~md~~GI~~~v~~~ 113 (342)
.++++..++.||..++...
T Consensus 57 ~~l~~~~k~~gi~~~leTn 75 (213)
T PRK10076 57 TRFLQRLRLWGVSCAIETA 75 (213)
T ss_pred HHHHHHHHHcCCCEEEECC
Confidence 5667777888987777654
No 251
>PF13147 Amidohydro_4: Amidohydrolase; PDB: 3SFW_B 2FTW_A 2PUZ_B 2GOK_B 3HM7_E 3D6N_A 1XRT_A 1XRF_A 1YNY_B 1K1D_F ....
Probab=51.69 E-value=53 Score=29.09 Aligned_cols=61 Identities=23% Similarity=0.186 Sum_probs=38.3
Q ss_pred hHHHHHHHhcCCCcEEEccCCCCCCCCCChHhHHHHHHHHHhcCCCCHHHHHHHHhHHHHHhcC
Q 019335 278 SPLSQVVSSFGANRVMWGSDFPYVVPECGYKGGREAASLIANEVPLSPSELEWIMGGTIMQLFQ 341 (342)
Q Consensus 278 ~~l~~~i~~~G~dRilfGSD~P~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~I~~~NA~rl~~ 341 (342)
..++.+++. | -++++|||++......+-..+...+ ..+...+++.++.-+....|+.++|+
T Consensus 227 ~~~~~l~~~-G-v~~~l~sD~~~~~~~~~~~~~~~~~-~~~~~~gl~~~~al~~~T~~pA~~lg 287 (304)
T PF13147_consen 227 AALRELLEA-G-VPVALGSDHAPSSTEGSGDLLHEAM-RLAVRAGLSPEEALRAATSNPARILG 287 (304)
T ss_dssp HHHHHHHHT-T-SSEEEEE-BBTTTTTCTTTHHHHHH-HHHHHTSSTHHHHHHHHTHHHHHHTT
T ss_pred HHHHHHHhC-C-CeEEEEcCCcccccccccccchhhh-hHHhhcCCCHHHHHHHHHHHHHHHhC
Confidence 345555554 5 8999999997653211111122222 22234799999999999999999986
No 252
>KOG1097 consensus Adenine deaminase/adenosine deaminase [Nucleotide transport and metabolism]
Probab=51.09 E-value=2.4e+02 Score=27.35 Aligned_cols=125 Identities=14% Similarity=0.136 Sum_probs=66.8
Q ss_pred cCCceEEEecCCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEEeccCCCCCHHHHHHHHHhCCCCcEEecccCCCCCCCCc
Q 019335 159 KDGFRAVRFNPYLWPSGQQMTNEVGKAMFSKAGELGVPVGFMCMKGLNLHISEIEELCTEFPSTTVLLDHLAFCKPPSND 238 (342)
Q Consensus 159 ~~g~~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH~~~~~~~~~~~l~~l~~~~P~lk~vl~H~G~~~p~~~~ 238 (342)
..+++||.+...... +..+ ..+.+++.++.+.|+.+.+|+|+.. .....+..++.-+ +++ =|+|+-.-.. .
T Consensus 208 ~~~VvGidL~G~e~~-~~p~--~~f~~vl~~~~~~gi~~t~HaGE~~-~~~~~v~~~LD~l-~~~-RIGHG~~l~~---d 278 (399)
T KOG1097|consen 208 PNFVVGIDLVGQEDL-GGPL--SLFLEVLAKAPAKGIHLTFHAGETN-GGASVVKNALDLL-GTE-RIGHGYFLTK---D 278 (399)
T ss_pred CCeEEEEecCCCCCC-CCCh--hhhHHHHHhhhhcCCcEEEEccccC-CChHHHHHHHHhh-CCc-cccCceeccC---C
Confidence 457789988765211 1221 2567889999999999999999763 3445566666622 122 3567655321 1
Q ss_pred hhhHhHHHHhcccCCCcEEEecCcccccccC-CCCCCCchhHHHHHHHhcCCCcEEEccCCCCCC
Q 019335 239 EESLAFSNLLKLSRFPQVYVKFSALFRVSRM-PFPYQDLSSPLSQVVSSFGANRVMWGSDFPYVV 302 (342)
Q Consensus 239 ~~~~~~~~~~~l~~~~Nvy~~~S~~~~~~~~-~~~~~~~~~~l~~~i~~~G~dRilfGSD~P~~~ 302 (342)
..++.+.+..|+.++++.+-..-.+ .+++.. .-+..+++. |. .+...||=|..-
T Consensus 279 ------p~L~~~~k~~nI~lEiCP~SN~vl~~v~d~rn--hp~~~~~~~-~v-P~vI~sDDP~~f 333 (399)
T KOG1097|consen 279 ------PELINLLKSRNIALEICPISNQVLGLVSDLRN--HPVARLLAA-GV-PVVINSDDPGFF 333 (399)
T ss_pred ------HHHHHHHHhcCceEEEccchhhheeccccccc--cHHHHHHhC-CC-CEEEeCCCcccc
Confidence 1234444555677776643211001 111111 234555544 33 455677766543
No 253
>COG1922 WecG Teichoic acid biosynthesis proteins [Cell envelope biogenesis, outer membrane]
Probab=50.69 E-value=28 Score=31.46 Aligned_cols=97 Identities=19% Similarity=0.226 Sum_probs=59.5
Q ss_pred HHHHHHHHHHhhhCCeEEEEeccCCCCCH-HHHHHHHHhCCCCcEEecccCCCCCCCCchhhHhHHHHhccc-CCCc-EE
Q 019335 181 EVGKAMFSKAGELGVPVGFMCMKGLNLHI-SEIEELCTEFPSTTVLLDHLAFCKPPSNDEESLAFSNLLKLS-RFPQ-VY 257 (342)
Q Consensus 181 ~~~~~~~~~a~e~~lpv~iH~~~~~~~~~-~~l~~l~~~~P~lk~vl~H~G~~~p~~~~~~~~~~~~~~~l~-~~~N-vy 257 (342)
+.+..+++.+.+.+++|.+-.+.. .-. .....+.++||+++|+-.|-|...+. +. +.+. .++. ..|. +.
T Consensus 95 Dl~~~Ll~~a~~~~~~vfllGgkp--~V~~~a~~~l~~~~p~l~ivg~h~GYf~~~---e~-~~i~--~~I~~s~pdil~ 166 (253)
T COG1922 95 DLVEALLKRAAEEGKRVFLLGGKP--GVAEQAAAKLRAKYPGLKIVGSHDGYFDPE---EE-EAIV--ERIAASGPDILL 166 (253)
T ss_pred HHHHHHHHHhCccCceEEEecCCH--HHHHHHHHHHHHHCCCceEEEecCCCCChh---hH-HHHH--HHHHhcCCCEEE
Confidence 567899999999999998875531 112 23567889999999999999986542 11 2221 2232 2333 44
Q ss_pred EecCcccccccCCCCCCCchhHHHHHHHhcCCCcEEEccC
Q 019335 258 VKFSALFRVSRMPFPYQDLSSPLSQVVSSFGANRVMWGSD 297 (342)
Q Consensus 258 ~~~S~~~~~~~~~~~~~~~~~~l~~~i~~~G~dRilfGSD 297 (342)
+.++.. + -+..+..-.+.+ ...++.|.-
T Consensus 167 VgmG~P----~-------QE~wi~~~~~~~-~~~v~igVG 194 (253)
T COG1922 167 VGMGVP----R-------QEIWIARNRQQL-PVAVAIGVG 194 (253)
T ss_pred EeCCCc----h-------hHHHHHHhHHhc-CCceEEecc
Confidence 443321 1 124566666776 467777654
No 254
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=50.41 E-value=1.8e+02 Score=28.68 Aligned_cols=127 Identities=18% Similarity=0.180 Sum_probs=67.0
Q ss_pred ChHHHHHHhHHCCCceEEEeCCCCC--cc----chHHHHHHHHhCCCcEEE---EEEcCCCCcchHHHHHHHHHhcCCce
Q 019335 93 HVDFLLQCMEEASVDGALIVQPINH--KF----DHSLVTSVLKKYPSKFVG---CCLANPAEDVIGIKQLEQLILKDGFR 163 (342)
Q Consensus 93 ~~~~ll~~md~~GI~~~v~~~~~~~--~~----~N~~~~~~~~~~p~r~~g---~~~i~p~~~~~~~~eler~~~~~g~~ 163 (342)
...+.+++.-+.||..+|++...+. +. ..+.+.+.++++.=|++| +..++|...-.. -+.-.....|=.
T Consensus 76 ~~~~~l~e~~~~gv~~~vi~s~gf~e~g~~g~~~~~~l~~~a~~~girvlGPnc~G~~~~~~~l~~--~~~~~~~~~G~v 153 (447)
T TIGR02717 76 YVPQVVEECGEKGVKGAVVITAGFKEVGEEGAELEQELVEIARKYGMRLLGPNCLGIINTHIKLNA--TFAPTMPKKGGI 153 (447)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCccccCcchHHHHHHHHHHHHHcCCEEEecCeeeEecCCCCeee--ecCCCCCCCCCE
Confidence 3466777778889998888764321 11 235677888887667776 345666532000 000000011211
Q ss_pred EEEecCCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEE--eccCCCCCHHHHHHHHHhCCCCcEEecccCC
Q 019335 164 AVRFNPYLWPSGQQMTNEVGKAMFSKAGELGVPVGFM--CMKGLNLHISEIEELCTEFPSTTVLLDHLAF 231 (342)
Q Consensus 164 Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH--~~~~~~~~~~~l~~l~~~~P~lk~vl~H~G~ 231 (342)
|+ ... .......++..+.+.|+-+... +|........++.+.+..-|+++.|+-|+=+
T Consensus 154 al--vsq--------SG~~~~~~~~~~~~~g~g~s~~vs~Gn~~d~~~~d~l~~l~~D~~t~~I~ly~E~ 213 (447)
T TIGR02717 154 AF--ISQ--------SGALLTALLDWAEKNGVGFSYFVSLGNKADIDESDLLEYLADDPDTKVILLYLEG 213 (447)
T ss_pred EE--Eec--------hHHHHHHHHHHHHhcCCCcceEEECCchhhCCHHHHHHHHhhCCCCCEEEEEecC
Confidence 11 111 1123456677777766666433 3322223455666666666777777777654
No 255
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=50.26 E-value=57 Score=26.24 Aligned_cols=27 Identities=22% Similarity=0.281 Sum_probs=17.1
Q ss_pred CCcHHHHHHHHHHhhhCCeEEEEeccC
Q 019335 178 MTNEVGKAMFSKAGELGVPVGFMCMKG 204 (342)
Q Consensus 178 l~~~~~~~~~~~a~e~~lpv~iH~~~~ 204 (342)
++.+....+.+..++..-||++||..|
T Consensus 70 ~~~~~v~~f~~~~~~~~~pvL~HC~sG 96 (135)
T TIGR01244 70 ITPDDVETFRAAIGAAEGPVLAYCRSG 96 (135)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEcCCC
Confidence 444455555555666677888888755
No 256
>COG1904 UxaC Glucuronate isomerase [Carbohydrate transport and metabolism]
Probab=50.10 E-value=7.8 Score=37.45 Aligned_cols=54 Identities=24% Similarity=0.210 Sum_probs=31.4
Q ss_pred CCCCCCeeeeeeeccCCCCccCCCCCCCCCCCCCCCCChHHHH-HHhHHCCCceEEEeC
Q 019335 56 TPSKVKIIDSHLHVWASPEEAADKFPYFPGQEPTLPGHVDFLL-QCMEEASVDGALIVQ 113 (342)
Q Consensus 56 ~~~~~~iID~H~Hl~~~~~~~~~~~p~~~~~~~~~~~~~~~ll-~~md~~GI~~~v~~~ 113 (342)
-...|+|||-|+|+- |. .+....+|.... ..+...|.|+ ..|..+||.--.+.+
T Consensus 21 ~vkdlPIidpH~Hl~-P~-~i~en~~F~d~t--~l~l~~DHY~wRmmrs~GV~e~~itg 75 (463)
T COG1904 21 YVKDLPIIDPHCHLE-PQ-EIAENEAFPDPT--SLWLKGDHYKWRMMRSNGVAERLITG 75 (463)
T ss_pred hhcCCCeeCCcCCCC-HH-HHhhcCCCCCHH--HHhhcccHHHHHHHHHcCCchhhcCC
Confidence 346789999999994 32 223333332110 1233445554 468889998776654
No 257
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=49.48 E-value=1.3e+02 Score=28.71 Aligned_cols=147 Identities=17% Similarity=0.219 Sum_probs=77.3
Q ss_pred HHHHHHHHhCCCcEEEEEEcCCCCcchHHHHHHHHHhcCCceEEEecCCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEEe
Q 019335 122 SLVTSVLKKYPSKFVGCCLANPAEDVIGIKQLEQLILKDGFRAVRFNPYLWPSGQQMTNEVGKAMFSKAGELGVPVGFMC 201 (342)
Q Consensus 122 ~~~~~~~~~~p~r~~g~~~i~p~~~~~~~~eler~~~~~g~~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH~ 201 (342)
.++.+++++.. +. +...|.+.. .++.+.++ +-.+++... .+.+ .++++.+.+.|.||.+=.
T Consensus 172 ~~L~~~~~~~G--l~--~~t~v~d~~-~~~~l~~~-----vd~lkI~s~------~~~n---~~LL~~~a~~gkPVilk~ 232 (360)
T PRK12595 172 KILKQVADEYG--LA--VISEIVNPA-DVEVALDY-----VDVIQIGAR------NMQN---FELLKAAGRVNKPVLLKR 232 (360)
T ss_pred HHHHHHHHHcC--CC--EEEeeCCHH-HHHHHHHh-----CCeEEECcc------cccC---HHHHHHHHccCCcEEEeC
Confidence 45666666653 11 122555543 34455433 335555432 2333 589999999999999877
Q ss_pred ccCCCCCHHHHH---HHHHhCCCCcEEecccCC-CCCCCCchhhHhHHHHhcc---cCCCcEEEecCcccccccCCCCCC
Q 019335 202 MKGLNLHISEIE---ELCTEFPSTTVLLDHLAF-CKPPSNDEESLAFSNLLKL---SRFPQVYVKFSALFRVSRMPFPYQ 274 (342)
Q Consensus 202 ~~~~~~~~~~l~---~l~~~~P~lk~vl~H~G~-~~p~~~~~~~~~~~~~~~l---~~~~Nvy~~~S~~~~~~~~~~~~~ 274 (342)
|.. ..+.++. +.+...-+-++++.|-|. ..|. .+.....+..+..| ...| |-+|.|.... ..
T Consensus 233 G~~--~t~~e~~~Ave~i~~~Gn~~i~L~erg~s~yp~-~~~~~ldl~~i~~lk~~~~~P-V~~d~~Hs~G-------~r 301 (360)
T PRK12595 233 GLS--ATIEEFIYAAEYIMSQGNGQIILCERGIRTYEK-ATRNTLDISAVPILKQETHLP-VMVDVTHSTG-------RR 301 (360)
T ss_pred CCC--CCHHHHHHHHHHHHHCCCCCEEEECCccCCCCC-CCCCCcCHHHHHHHHHHhCCC-EEEeCCCCCc-------ch
Confidence 631 2444443 344444445789999443 3231 11222344443333 3456 6666554311 01
Q ss_pred CchhHHHHHHHhcCCCcEEEccCC
Q 019335 275 DLSSPLSQVVSSFGANRVMWGSDF 298 (342)
Q Consensus 275 ~~~~~l~~~i~~~G~dRilfGSD~ 298 (342)
+..+.+..+.-.+|+|=++..+.+
T Consensus 302 ~~~~~~a~aAva~GAdg~~iE~H~ 325 (360)
T PRK12595 302 DLLLPTAKAALAIGADGVMAEVHP 325 (360)
T ss_pred hhHHHHHHHHHHcCCCeEEEEecC
Confidence 122234444456799888888776
No 258
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=49.36 E-value=1.1e+02 Score=28.47 Aligned_cols=118 Identities=14% Similarity=0.178 Sum_probs=60.6
Q ss_pred CChHHHHHHhH---HCCCceEEEeCCCCCccchHHHHHHHH----hCCCcEEEEEEcCCC--------CcchHHHHHHHH
Q 019335 92 GHVDFLLQCME---EASVDGALIVQPINHKFDHSLVTSVLK----KYPSKFVGCCLANPA--------EDVIGIKQLEQL 156 (342)
Q Consensus 92 ~~~~~ll~~md---~~GI~~~v~~~~~~~~~~N~~~~~~~~----~~p~r~~g~~~i~p~--------~~~~~~~eler~ 156 (342)
-+.|++++..+ +.|++...+........+.+++.++++ .+|+ +. +..+.+. ..-...+.++++
T Consensus 36 ls~eeI~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~i~~~Ik~~~~~-i~-~~~~s~~e~~~~~~~~g~~~~e~l~~L 113 (309)
T TIGR00423 36 LSLEEILEKVKEAVAKGATEVCIQGGLNPQLDIEYYEELFRAIKQEFPD-VH-IHAFSPMEVYFLAKNEGLSIEEVLKRL 113 (309)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEecCCCCCCCHHHHHHHHHHHHHHCCC-ce-EEecCHHHHHHHHHHcCCCHHHHHHHH
Confidence 46677766544 789998887743222223455444444 3453 22 2222211 000012455555
Q ss_pred HhcCCceEEEe-c--CC---CCC--CCCcCCcHHHHHHHHHHhhhCCeEEEEeccCCCCCHHHH
Q 019335 157 ILKDGFRAVRF-N--PY---LWP--SGQQMTNEVGKAMFSKAGELGVPVGFMCMKGLNLHISEI 212 (342)
Q Consensus 157 ~~~~g~~Gvk~-~--~~---~~~--~g~~l~~~~~~~~~~~a~e~~lpv~iH~~~~~~~~~~~l 212 (342)
++.|+..+-. . .. ... ......-..+....+.|.++|+++..+.--|.+...++.
T Consensus 114 -keAGl~~i~~~g~E~l~~~~~~~i~~~~~t~~~~l~~i~~a~~~Gi~~~s~~iiG~~Et~ed~ 176 (309)
T TIGR00423 114 -KKAGLDSMPGTGAEILDDSVRRKICPNKLSSDEWLEVIKTAHRLGIPTTATMMFGHVENPEHR 176 (309)
T ss_pred -HHcCCCcCCCCcchhcCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCceeeEEecCCCCHHHH
Confidence 5666654421 1 00 000 012234457789999999999999877655545554443
No 259
>PF03096 Ndr: Ndr family; InterPro: IPR004142 This family consists of proteins from different gene families: Ndr1/RTP/Drg1, Ndr2, and Ndr3. Their similarity was previously noted []. The precise molecular and cellular function of members of this family is still unknown, yet they are known to be involved in cellular differentiation events. The Ndr1 group was the first to be discovered. Their expression is repressed by the proto-oncogenes N-myc and c-myc, and in line with this observation, Ndr1 protein expression is down-regulated in neoplastic cells, and is reactivated when differentiation is induced by chemicals such as retinoic acid. Ndr2 and Ndr3 expression is not under the control of N-myc or c-myc. Ndr1 expression is also activated by several chemicals: tunicamycin and homocysteine induce Ndr1 in human umbilical endothelial cells; nickel induces Ndr1 in several cell types. Members of this family are found in wide variety of multicellular eukaryotes, including an Ndr1 type protein in Helianthus annuus (Common sunflower), known as Sf21. Interestingly, the highest scoring matches in the noise are all alpha/beta hydrolases (IPR000073 from INTERPRO), suggesting that this family may have an enzymatic function.; PDB: 2QMQ_A 2XMR_B 2XMQ_B 2XMS_A.
Probab=49.30 E-value=13 Score=34.29 Aligned_cols=48 Identities=15% Similarity=0.252 Sum_probs=30.6
Q ss_pred HHHHHHhHHCCCceEEEeCCCCCccchHHHHHHHHhCCCcEEEEEEcCCCC
Q 019335 95 DFLLQCMEEASVDGALIVQPINHKFDHSLVTSVLKKYPSKFVGCCLANPAE 145 (342)
Q Consensus 95 ~~ll~~md~~GI~~~v~~~~~~~~~~N~~~~~~~~~~p~r~~g~~~i~p~~ 145 (342)
|++.+.++..|+...|-+... .| -.-+..++-+||+|+.|.+.|+|.-
T Consensus 87 e~l~~Vl~~f~lk~vIg~GvG-AG--AnIL~rfAl~~p~~V~GLiLvn~~~ 134 (283)
T PF03096_consen 87 EMLPEVLDHFGLKSVIGFGVG-AG--ANILARFALKHPERVLGLILVNPTC 134 (283)
T ss_dssp CTHHHHHHHHT---EEEEEET-HH--HHHHHHHHHHSGGGEEEEEEES---
T ss_pred HHHHHHHHhCCccEEEEEeec-cc--hhhhhhccccCccceeEEEEEecCC
Confidence 445667889999998887631 11 2235677779999999999999875
No 260
>PLN02417 dihydrodipicolinate synthase
Probab=49.16 E-value=2.1e+02 Score=26.11 Aligned_cols=51 Identities=10% Similarity=0.007 Sum_probs=33.9
Q ss_pred HHHHHHHhcCCceEEEecCCCCCCCCcCCcHHHHHHHHHHhhh---CCeEEEEecc
Q 019335 151 KQLEQLILKDGFRAVRFNPYLWPSGQQMTNEVGKAMFSKAGEL---GVPVGFMCMK 203 (342)
Q Consensus 151 ~eler~~~~~g~~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e~---~lpv~iH~~~ 203 (342)
+.++++ .+.|+.||-+.... .....++.++...+.+.+.+. ++||.++++.
T Consensus 26 ~~i~~l-~~~Gv~Gi~~~Gst-GE~~~ls~~Er~~~~~~~~~~~~~~~pvi~gv~~ 79 (280)
T PLN02417 26 SLVNMQ-IENGAEGLIVGGTT-GEGQLMSWDEHIMLIGHTVNCFGGKIKVIGNTGS 79 (280)
T ss_pred HHHHHH-HHcCCCEEEECccC-cchhhCCHHHHHHHHHHHHHHhCCCCcEEEECCC
Confidence 344444 46799999877543 224467877777777766553 5889988874
No 261
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=48.41 E-value=2e+02 Score=25.75 Aligned_cols=46 Identities=20% Similarity=0.103 Sum_probs=28.2
Q ss_pred HHHHHHhcCCceEEEecCCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEEec
Q 019335 152 QLEQLILKDGFRAVRFNPYLWPSGQQMTNEVGKAMFSKAGELGVPVGFMCM 202 (342)
Q Consensus 152 eler~~~~~g~~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH~~ 202 (342)
-+++| ++.||..|-+.... -.+..+....+.+++.+.|+-|..-.+
T Consensus 76 Yl~~~-k~lGf~~IEiS~G~----~~i~~~~~~rlI~~~~~~g~~v~~EvG 121 (237)
T TIGR03849 76 YLNEC-DELGFEAVEISDGS----MEISLEERCNLIERAKDNGFMVLSEVG 121 (237)
T ss_pred HHHHH-HHcCCCEEEEcCCc----cCCCHHHHHHHHHHHHhCCCeEecccc
Confidence 33344 56777777666421 345666667777777777777765544
No 262
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=48.26 E-value=2.1e+02 Score=25.85 Aligned_cols=179 Identities=15% Similarity=0.102 Sum_probs=100.2
Q ss_pred HHHHHHhHHCCCceEEE-eCCCC-----------------CccchHHHHHHH---HhC-CC-cEEEEEEcCCCCcchHHH
Q 019335 95 DFLLQCMEEASVDGALI-VQPIN-----------------HKFDHSLVTSVL---KKY-PS-KFVGCCLANPAEDVIGIK 151 (342)
Q Consensus 95 ~~ll~~md~~GI~~~v~-~~~~~-----------------~~~~N~~~~~~~---~~~-p~-r~~g~~~i~p~~~~~~~~ 151 (342)
.+++..|.+.|++..=+ ++-+. .+..-+.+.+.+ +++ ++ .++.+...||-..-...+
T Consensus 27 ~~~~~~l~~~Gad~iElGiPfsDP~aDGpvIq~a~~~al~~G~~~~~~~~~v~~ir~~~~~~plv~m~Y~Npi~~~G~e~ 106 (256)
T TIGR00262 27 LEIIKTLIEAGADALELGVPFSDPLADGPTIQAADLRALRAGMTPEKCFELLKKVRQKHPNIPIGLLTYYNLIFRKGVEE 106 (256)
T ss_pred HHHHHHHHHcCCCEEEECCCCCCCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEEeccHHhhhhHHH
Confidence 45566788899987655 22111 011112233333 222 33 456667788843211223
Q ss_pred HHHHHHhcCCceEEEecCCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEEeccCCCCCHHHHHHHHHhCCCCcEEecccCC
Q 019335 152 QLEQLILKDGFRAVRFNPYLWPSGQQMTNEVGKAMFSKAGELGVPVGFMCMKGLNLHISEIEELCTEFPSTTVLLDHLAF 231 (342)
Q Consensus 152 eler~~~~~g~~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH~~~~~~~~~~~l~~l~~~~P~lk~vl~H~G~ 231 (342)
-++++ .+.|+.|+-++... .+...++.++|.++|+...+-+... ...+.+..+++.-.+.-.++...|.
T Consensus 107 f~~~~-~~aGvdgviipDlp--------~ee~~~~~~~~~~~gl~~i~lv~P~--T~~eri~~i~~~~~gfiy~vs~~G~ 175 (256)
T TIGR00262 107 FYAKC-KEVGVDGVLVADLP--------LEESGDLVEAAKKHGVKPIFLVAPN--ADDERLKQIAEKSQGFVYLVSRAGV 175 (256)
T ss_pred HHHHH-HHcCCCEEEECCCC--------hHHHHHHHHHHHHCCCcEEEEECCC--CCHHHHHHHHHhCCCCEEEEECCCC
Confidence 45555 68899999887431 2567899999999999876555532 3456788888887766677776654
Q ss_pred CCCC--CCchhhHhHHHHhcccCCCcEEEecCcccccccCCCCCCCchhHHHHHHHhcCCCcEEEccCC
Q 019335 232 CKPP--SNDEESLAFSNLLKLSRFPQVYVKFSALFRVSRMPFPYQDLSSPLSQVVSSFGANRVMWGSDF 298 (342)
Q Consensus 232 ~~p~--~~~~~~~~~~~~~~l~~~~Nvy~~~S~~~~~~~~~~~~~~~~~~l~~~i~~~G~dRilfGSD~ 298 (342)
.--. .........+++.+..+.| ++++..-- + .+.++.++ ..|.|-++-||-.
T Consensus 176 TG~~~~~~~~~~~~i~~lr~~~~~p-i~vgfGI~-----------~-~e~~~~~~-~~GADgvVvGSai 230 (256)
T TIGR00262 176 TGARNRAASALNELVKRLKAYSAKP-VLVGFGIS-----------K-PEQVKQAI-DAGADGVIVGSAI 230 (256)
T ss_pred CCCcccCChhHHHHHHHHHhhcCCC-EEEeCCCC-----------C-HHHHHHHH-HcCCCEEEECHHH
Confidence 2110 1111111122233333333 67665421 0 13456654 4589999999964
No 263
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=46.77 E-value=1.3e+02 Score=27.46 Aligned_cols=73 Identities=11% Similarity=0.212 Sum_probs=48.7
Q ss_pred chHHHHHHHHHhcCCceEEEecCCCC--CCC--CcCCcH----HHHHHHHHHhhhCCeEEEEeccCCCCCHHHHHHHHHh
Q 019335 147 VIGIKQLEQLILKDGFRAVRFNPYLW--PSG--QQMTNE----VGKAMFSKAGELGVPVGFMCMKGLNLHISEIEELCTE 218 (342)
Q Consensus 147 ~~~~~eler~~~~~g~~Gvk~~~~~~--~~g--~~l~~~----~~~~~~~~a~e~~lpv~iH~~~~~~~~~~~l~~l~~~ 218 (342)
.++++.+++.+..+|+.|+-+.+... .-| ...++| .++.+.+.|.++|+++.++.. ........+++
T Consensus 155 ~~a~~n~~~I~~~~gvd~i~~G~~Dls~slg~~~~~~~pev~~ai~~v~~a~~~~Gk~~G~~~~-----~~~~a~~~~~~ 229 (267)
T PRK10128 155 KTALDNLDEILDVEGIDGVFIGPADLSASLGYPDNAGHPEVQRIIETSIRRIRAAGKAAGFLAV-----DPDMAQKCLAW 229 (267)
T ss_pred HHHHHhHHHHhCCCCCCEEEECHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEcCC-----CHHHHHHHHHc
Confidence 34888999988888999998876531 011 234444 566777889999999987654 34555555553
Q ss_pred CCCCcEEe
Q 019335 219 FPSTTVLL 226 (342)
Q Consensus 219 ~P~lk~vl 226 (342)
+.+++.
T Consensus 230 --G~~~v~ 235 (267)
T PRK10128 230 --GANFVA 235 (267)
T ss_pred --CCcEEE
Confidence 456555
No 264
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=46.12 E-value=2.3e+02 Score=26.51 Aligned_cols=75 Identities=24% Similarity=0.382 Sum_probs=41.2
Q ss_pred CcHHHHHHHHHHhhhCCeEEEEeccCCC--CCH----HHHHHHHHhCCCCcEEecccCCCCCCCCchhhHhHHHHhc-c-
Q 019335 179 TNEVGKAMFSKAGELGVPVGFMCMKGLN--LHI----SEIEELCTEFPSTTVLLDHLAFCKPPSNDEESLAFSNLLK-L- 250 (342)
Q Consensus 179 ~~~~~~~~~~~a~e~~lpv~iH~~~~~~--~~~----~~l~~l~~~~P~lk~vl~H~G~~~p~~~~~~~~~~~~~~~-l- 250 (342)
+.+....+++.|++.+.||.+.+..+.- ..+ ..+..++++.+.+.+++ |+-.+. .++.+.+ +
T Consensus 26 n~e~~~avi~AAe~~~sPvIlq~s~~~~~~~g~~~~~~~~~~~a~~~~~VPVal-HLDHg~---------~~e~i~~ai~ 95 (307)
T PRK05835 26 NFEMLNAIFEAGNEENSPLFIQASEGAIKYMGIDMAVGMVKIMCERYPHIPVAL-HLDHGT---------TFESCEKAVK 95 (307)
T ss_pred CHHHHHHHHHHHHHHCCCEEEEcCccHHhhCChHHHHHHHHHHHHhcCCCeEEE-ECCCCC---------CHHHHHHHHH
Confidence 3467788888888888888888764310 111 23455667665455443 444421 0122221 2
Q ss_pred cCCCcEEEecCcc
Q 019335 251 SRFPQVYVKFSAL 263 (342)
Q Consensus 251 ~~~~Nvy~~~S~~ 263 (342)
+.+..|.+|-|..
T Consensus 96 ~GftSVM~DgS~l 108 (307)
T PRK05835 96 AGFTSVMIDASHH 108 (307)
T ss_pred cCCCEEEEeCCCC
Confidence 2466777777754
No 265
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=45.26 E-value=2.2e+02 Score=25.33 Aligned_cols=98 Identities=15% Similarity=0.194 Sum_probs=0.0
Q ss_pred hHHHHHHhHHCCCceEEEeCCCCCccchHHHHHHHHhCCCcEEEEEEcCCCCcchHHHHHHHHHh-cCCceEEEecCCCC
Q 019335 94 VDFLLQCMEEASVDGALIVQPINHKFDHSLVTSVLKKYPSKFVGCCLANPAEDVIGIKQLEQLIL-KDGFRAVRFNPYLW 172 (342)
Q Consensus 94 ~~~ll~~md~~GI~~~v~~~~~~~~~~N~~~~~~~~~~p~r~~g~~~i~p~~~~~~~~eler~~~-~~g~~Gvk~~~~~~ 172 (342)
.+.+++.+.++|+++.++.. ....+-..+.+.++++. +.....++|..+. +.++..++ ..|+. ..+.....
T Consensus 93 ~~~fi~~~~~aG~~giiipD--l~~ee~~~~~~~~~~~g--~~~i~~i~P~T~~---~~i~~i~~~~~~~v-y~~s~~g~ 164 (242)
T cd04724 93 LERFLRDAKEAGVDGLIIPD--LPPEEAEEFREAAKEYG--LDLIFLVAPTTPD---ERIKKIAELASGFI-YYVSRTGV 164 (242)
T ss_pred HHHHHHHHHHCCCcEEEECC--CCHHHHHHHHHHHHHcC--CcEEEEeCCCCCH---HHHHHHHhhCCCCE-EEEeCCCC
Q ss_pred CCCCcCCcHHHHHHHHHHhhh-CCeEEE
Q 019335 173 PSGQQMTNEVGKAMFSKAGEL-GVPVGF 199 (342)
Q Consensus 173 ~~g~~l~~~~~~~~~~~a~e~-~lpv~i 199 (342)
..+..-..+.....++.+.++ ++||.+
T Consensus 165 tG~~~~~~~~~~~~i~~lr~~~~~pI~v 192 (242)
T cd04724 165 TGARTELPDDLKELIKRIRKYTDLPIAV 192 (242)
T ss_pred CCCccCCChhHHHHHHHHHhcCCCcEEE
No 266
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=45.18 E-value=2.7e+02 Score=26.61 Aligned_cols=101 Identities=15% Similarity=0.090 Sum_probs=49.1
Q ss_pred HHHHHHhHHCCCceEEEeCCCCCccchHHHHHHHHhCC-CcEEEEEEcCCCCcchHHHHHHHHHhcCCceEEEecCCCCC
Q 019335 95 DFLLQCMEEASVDGALIVQPINHKFDHSLVTSVLKKYP-SKFVGCCLANPAEDVIGIKQLEQLILKDGFRAVRFNPYLWP 173 (342)
Q Consensus 95 ~~ll~~md~~GI~~~v~~~~~~~~~~N~~~~~~~~~~p-~r~~g~~~i~p~~~~~~~~eler~~~~~g~~Gvk~~~~~~~ 173 (342)
-++.+.+++.||+..=+-.+.....+.+.+..+.+.-+ .++.+++. +. .+.+++.+ +.|+..|++......
T Consensus 25 ~~ia~~L~~~Gv~~IEvG~p~~~~~~~e~i~~i~~~~~~~~v~~~~r--~~-----~~di~~a~-~~g~~~i~i~~~~Sd 96 (363)
T TIGR02090 25 VEIARKLDELGVDVIEAGFPIASEGEFEAIKKISQEGLNAEICSLAR--AL-----KKDIDKAI-DCGVDSIHTFIATSP 96 (363)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCChHHHHHHHHHHhcCCCcEEEEEcc--cC-----HHHHHHHH-HcCcCEEEEEEcCCH
Confidence 44566899999998765433222222233333333322 24444432 21 13355553 557776665422100
Q ss_pred ----CCCcCC----cHHHHHHHHHHhhhCCeEEEEecc
Q 019335 174 ----SGQQMT----NEVGKAMFSKAGELGVPVGFMCMK 203 (342)
Q Consensus 174 ----~g~~l~----~~~~~~~~~~a~e~~lpv~iH~~~ 203 (342)
.....+ -+...+..++|.++|+.|.+...+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~ed 134 (363)
T TIGR02090 97 IHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEFSAED 134 (363)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEee
Confidence 000111 134556677777778777766543
No 267
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=45.12 E-value=1.4e+02 Score=29.13 Aligned_cols=134 Identities=16% Similarity=0.061 Sum_probs=70.5
Q ss_pred ChHHHHHHhHHCCCceEEEeCCCC--Cc------cchHHHHHHHHhCC---CcEEEEE--EcCCCCcc---------hHH
Q 019335 93 HVDFLLQCMEEASVDGALIVQPIN--HK------FDHSLVTSVLKKYP---SKFVGCC--LANPAEDV---------IGI 150 (342)
Q Consensus 93 ~~~~ll~~md~~GI~~~v~~~~~~--~~------~~N~~~~~~~~~~p---~r~~g~~--~i~p~~~~---------~~~ 150 (342)
.+...+++..+.|.+..-++..+. |. .+-+...+.++++. ..+...+ .+|+..++ ...
T Consensus 142 G~~~a~~~a~~~g~~afqiF~~npr~w~~~~~~~~~~~~f~~~~~~~gi~~~~i~~HapYlINLASpd~e~rekSv~~~~ 221 (413)
T PTZ00372 142 GVDNSPINAYNIAGQAFALFLKNQRTWNSPPLSDETIDKFKENCKKYNYDPKFILPHGSYLINLANPDKEKREKSYDAFL 221 (413)
T ss_pred cHHHHHHHHHHcCCCEEEEEcCCCccCCCCCCCHHHHHHHHHHHHHcCCCcceEEeecCceecCCCCCHHHHHHHHHHHH
Confidence 445566666777777666664322 21 11234455666652 1132222 35554332 134
Q ss_pred HHHHHHHhcCCceEEEecCCCCCCCCcCCcHHHHHHHHH-----HhhhCCeEEEEeccC----CCCCHHHHHHHHHhC--
Q 019335 151 KQLEQLILKDGFRAVRFNPYLWPSGQQMTNEVGKAMFSK-----AGELGVPVGFMCMKG----LNLHISEIEELCTEF-- 219 (342)
Q Consensus 151 ~eler~~~~~g~~Gvk~~~~~~~~g~~l~~~~~~~~~~~-----a~e~~lpv~iH~~~~----~~~~~~~l~~l~~~~-- 219 (342)
++|+++ ...|+..|.+||.... +..-....+..+.+. ++..++.+.+-...+ ....+.++..++++.
T Consensus 222 ~eL~rA-~~LGa~~VV~HPGs~~-~~~~~ee~i~~i~e~L~~~la~~~gV~IlLENmag~g~~lG~~~eeL~~Iid~v~~ 299 (413)
T PTZ00372 222 DDLQRC-EQLGIKLYNFHPGSTV-GQCSKEEGIKNIADCINKAHEETKSVIIVLENTAGQKNSVGSKFEDLRDIIALVED 299 (413)
T ss_pred HHHHHH-HHcCCCEEEECCCcCC-CCCCHHHHHHHHHHHHHHHHhCcCCCEEEEecCCCCCCcccCCHHHHHHHHHhcCC
Confidence 566666 6899999999987521 111112223333222 233566676654322 124567788887764
Q ss_pred -CCCcEEecc
Q 019335 220 -PSTTVLLDH 228 (342)
Q Consensus 220 -P~lk~vl~H 228 (342)
+++.|++|=
T Consensus 300 ~~rlGvCLDT 309 (413)
T PTZ00372 300 KSRVGVCLDT 309 (413)
T ss_pred cCCeEEEEEH
Confidence 578888753
No 268
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=44.62 E-value=1.9e+02 Score=24.17 Aligned_cols=76 Identities=8% Similarity=-0.034 Sum_probs=41.1
Q ss_pred hHHHHHHhHHCCCceEEEeCCCCCccc------hHHHHHHHHhC-CCcEEEEEEcCCCCc--chHHHHHHHHHhcCCceE
Q 019335 94 VDFLLQCMEEASVDGALIVQPINHKFD------HSLVTSVLKKY-PSKFVGCCLANPAED--VIGIKQLEQLILKDGFRA 164 (342)
Q Consensus 94 ~~~ll~~md~~GI~~~v~~~~~~~~~~------N~~~~~~~~~~-p~r~~g~~~i~p~~~--~~~~~eler~~~~~g~~G 164 (342)
.-+..+...+.|.+...+..+..+... .++..++++.- .+ +.-+....|... .+.+.++-+.+.+.|+.+
T Consensus 67 ~~~~a~~a~~~Gad~i~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~pv~iy~~p~~~~~~~~~~~~~~~~~~~g~~~ 145 (201)
T cd00945 67 KVAEVEEAIDLGADEIDVVINIGSLKEGDWEEVLEEIAAVVEAADGG-LPLKVILETRGLKTADEIAKAARIAAEAGADF 145 (201)
T ss_pred HHHHHHHHHHcCCCEEEEeccHHHHhCCCHHHHHHHHHHHHHHhcCC-ceEEEEEECCCCCCHHHHHHHHHHHHHhCCCE
Confidence 345556778899999888765322222 24444555542 22 222333333321 223344444446789999
Q ss_pred EEecCC
Q 019335 165 VRFNPY 170 (342)
Q Consensus 165 vk~~~~ 170 (342)
||....
T Consensus 146 iK~~~~ 151 (201)
T cd00945 146 IKTSTG 151 (201)
T ss_pred EEeCCC
Confidence 998764
No 269
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=44.61 E-value=2.2e+02 Score=25.28 Aligned_cols=91 Identities=15% Similarity=0.161 Sum_probs=57.0
Q ss_pred CChHHHHHHhHHCCCceEEEeCCCCCccchHHHHHHHHhCCC-cEEEEEEcCCCCcchHHHHHHHHHhcCCceEEEecCC
Q 019335 92 GHVDFLLQCMEEASVDGALIVQPINHKFDHSLVTSVLKKYPS-KFVGCCLANPAEDVIGIKQLEQLILKDGFRAVRFNPY 170 (342)
Q Consensus 92 ~~~~~ll~~md~~GI~~~v~~~~~~~~~~N~~~~~~~~~~p~-r~~g~~~i~p~~~~~~~~eler~~~~~g~~Gvk~~~~ 170 (342)
.|+.+..+.+ ++|.+..=+++.+..+ -.|+..+..-+|+ +|.+.+.|++... .+.+|+ +.|+.++.+...
T Consensus 120 ~TpsEi~~A~-~~Ga~~vKlFPA~~~G--~~~ikal~~p~p~i~~~ptGGV~~~~~-----n~~~yl-~aGa~avg~Gs~ 190 (222)
T PRK07114 120 GSLSEIGYAE-ELGCEIVKLFPGSVYG--PGFVKAIKGPMPWTKIMPTGGVEPTEE-----NLKKWF-GAGVTCVGMGSK 190 (222)
T ss_pred CCHHHHHHHH-HCCCCEEEECcccccC--HHHHHHHhccCCCCeEEeCCCCCcchh-----cHHHHH-hCCCEEEEEChh
Confidence 3566665544 4587777677654333 5677777777887 7888889998421 255564 479999987765
Q ss_pred CCCCCCcCCcHHHHHHHHHHhh
Q 019335 171 LWPSGQQMTNEVGKAMFSKAGE 192 (342)
Q Consensus 171 ~~~~g~~l~~~~~~~~~~~a~e 192 (342)
..+ ...+....|+.+-+.+++
T Consensus 191 L~~-~~~~~~~~~~~i~~~a~~ 211 (222)
T PRK07114 191 LIP-KEALAAKDYAGIEQKVRE 211 (222)
T ss_pred hcC-ccccccccHHHHHHHHHH
Confidence 422 233444556666665554
No 270
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=44.58 E-value=51 Score=29.24 Aligned_cols=101 Identities=15% Similarity=0.022 Sum_probs=60.9
Q ss_pred ChHHHHHHhHHCCCceEEEeCCCCCccchHHHHHHHHhCCC---cEEEEEEcCCCC--cchH-----HHHHHHHHhcCCc
Q 019335 93 HVDFLLQCMEEASVDGALIVQPINHKFDHSLVTSVLKKYPS---KFVGCCLANPAE--DVIG-----IKQLEQLILKDGF 162 (342)
Q Consensus 93 ~~~~ll~~md~~GI~~~v~~~~~~~~~~N~~~~~~~~~~p~---r~~g~~~i~p~~--~~~~-----~~eler~~~~~g~ 162 (342)
++..+++...+.|++..++.+. ++....+.+.+ ++-.+..++-.. .+.- +.++++++ +.|.
T Consensus 20 ~~~~~~~~a~~~~~~av~v~p~--------~~~~~~~~~~~~~~~~~~vi~fp~g~~~~~~k~~~~~~~~ve~A~-~~GA 90 (236)
T PF01791_consen 20 DIKKLCREAIEYGFDAVCVTPG--------YVKPAAELLAGSGVKVGLVIGFPFGTSTTEPKGYDQIVAEVEEAI-RLGA 90 (236)
T ss_dssp HHHHHHHHHHHHTSSEEEEEGG--------GHHHHHHHSTTSTSEEEEEESTTTSSSTHHHHTCEEEHHHHHHHH-HTT-
T ss_pred hHHHHHHHHHHhCCCEEEECHH--------HHHHHHHHhhccccccceEEEeCCCCCccccccccchHHHHHHHH-HcCC
Confidence 4566777778889988776542 12333333333 343344455432 1223 56788884 7899
Q ss_pred eEEEecCCCC--CCCC-cCCcHHHHHHHHHHhhhCCeEEEEec
Q 019335 163 RAVRFNPYLW--PSGQ-QMTNEVGKAMFSKAGELGVPVGFMCM 202 (342)
Q Consensus 163 ~Gvk~~~~~~--~~g~-~l~~~~~~~~~~~a~e~~lpv~iH~~ 202 (342)
.+|.+..+.. ..+. ....+.+..+-+.|+++++||.+.+.
T Consensus 91 d~vd~vi~~~~~~~~~~~~~~~~i~~v~~~~~~~gl~vIlE~~ 133 (236)
T PF01791_consen 91 DEVDVVINYGALGSGNEDEVIEEIAAVVEECHKYGLKVILEPY 133 (236)
T ss_dssp SEEEEEEEHHHHHTTHHHHHHHHHHHHHHHHHTSEEEEEEEEC
T ss_pred ceeeeeccccccccccHHHHHHHHHHHHHHHhcCCcEEEEEEe
Confidence 9998776531 1111 12235778889999999999999953
No 271
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=44.51 E-value=1.5e+02 Score=23.97 Aligned_cols=106 Identities=9% Similarity=0.006 Sum_probs=50.6
Q ss_pred HhHHCCCceEEEeCCCCCccchHHHHHHHHhCCCcEEEEEEcCCCCcchHHHHHHHHHhcCCceEEEecCCCCCCCC-cC
Q 019335 100 CMEEASVDGALIVQPINHKFDHSLVTSVLKKYPSKFVGCCLANPAEDVIGIKQLEQLILKDGFRAVRFNPYLWPSGQ-QM 178 (342)
Q Consensus 100 ~md~~GI~~~v~~~~~~~~~~N~~~~~~~~~~p~r~~g~~~i~p~~~~~~~~eler~~~~~g~~Gvk~~~~~~~~g~-~l 178 (342)
.++..|.+-.-+ .. ....+.+.+.+.++.-.++++-........ ..+++.+.+++.|..++++... |. ..
T Consensus 26 ~lr~~G~eVi~L-G~---~vp~e~i~~~a~~~~~d~V~lS~~~~~~~~-~~~~~~~~L~~~~~~~~~i~vG----G~~~~ 96 (137)
T PRK02261 26 ALTEAGFEVINL-GV---MTSQEEFIDAAIETDADAILVSSLYGHGEI-DCRGLREKCIEAGLGDILLYVG----GNLVV 96 (137)
T ss_pred HHHHCCCEEEEC-CC---CCCHHHHHHHHHHcCCCEEEEcCccccCHH-HHHHHHHHHHhcCCCCCeEEEE----CCCCC
Confidence 455667654432 21 112344555555543346666544444333 2333333335666655554432 21 12
Q ss_pred CcHHHHHHHHHHhhhCCeEEEEeccCCCCCHHHHHHHHHh
Q 019335 179 TNEVGKAMFSKAGELGVPVGFMCMKGLNLHISEIEELCTE 218 (342)
Q Consensus 179 ~~~~~~~~~~~a~e~~lpv~iH~~~~~~~~~~~l~~l~~~ 218 (342)
.+..+....+.+.++|+-..+..+ ..++++...+++
T Consensus 97 ~~~~~~~~~~~l~~~G~~~vf~~~----~~~~~i~~~l~~ 132 (137)
T PRK02261 97 GKHDFEEVEKKFKEMGFDRVFPPG----TDPEEAIDDLKK 132 (137)
T ss_pred CccChHHHHHHHHHcCCCEEECcC----CCHHHHHHHHHH
Confidence 334455666777777765555443 234555555444
No 272
>PRK09257 aromatic amino acid aminotransferase; Provisional
Probab=44.24 E-value=2.4e+02 Score=26.85 Aligned_cols=28 Identities=21% Similarity=0.179 Sum_probs=21.1
Q ss_pred CCCCcCCcHHHHHHHHHHhhhCCeEEEE
Q 019335 173 PSGQQMTNEVGKAMFSKAGELGVPVGFM 200 (342)
Q Consensus 173 ~~g~~l~~~~~~~~~~~a~e~~lpv~iH 200 (342)
|.|..+..++++.+.+.|+++|+.|...
T Consensus 184 PTG~~~s~~~~~~l~~~a~~~~~~ii~D 211 (396)
T PRK09257 184 PTGADLTPEQWDELAELLKERGLIPFLD 211 (396)
T ss_pred CCCCCCCHHHHHHHHHHHHhCCcEEEEe
Confidence 5577777788888888888888877543
No 273
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=43.25 E-value=2.3e+02 Score=25.89 Aligned_cols=126 Identities=19% Similarity=0.184 Sum_probs=70.5
Q ss_pred HHHHHHhcCCceEEEecCCCCCCCCcCCcHHHHHHHHHHhh---hCCeEEEEeccCC-----------------------
Q 019335 152 QLEQLILKDGFRAVRFNPYLWPSGQQMTNEVGKAMFSKAGE---LGVPVGFMCMKGL----------------------- 205 (342)
Q Consensus 152 eler~~~~~g~~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e---~~lpv~iH~~~~~----------------------- 205 (342)
.++.+ .+.|+.|+-+.... ..+..++.++...+++.+.+ -++||.++++...
T Consensus 27 ~i~~l-~~~Gv~gl~~~Gst-GE~~~Lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~st~~~i~~a~~a~~~Gad~v~v~~ 104 (289)
T PF00701_consen 27 LIDFL-IEAGVDGLVVLGST-GEFYSLTDEERKELLEIVVEAAAGRVPVIAGVGANSTEEAIELARHAQDAGADAVLVIP 104 (289)
T ss_dssp HHHHH-HHTTSSEEEESSTT-TTGGGS-HHHHHHHHHHHHHHHTTSSEEEEEEESSSHHHHHHHHHHHHHTT-SEEEEEE
T ss_pred HHHHH-HHcCCCEEEECCCC-cccccCCHHHHHHHHHHHHHHccCceEEEecCcchhHHHHHHHHHHHhhcCceEEEEec
Confidence 34444 46799999887653 23456888888888887766 4689999987431
Q ss_pred C----CC----HHHHHHHHHhCCCCcEEecccCCCCCCCCchhhHhHHHHhcccCCCc-EEEecCcccccccCCCCCCCc
Q 019335 206 N----LH----ISEIEELCTEFPSTTVLLDHLAFCKPPSNDEESLAFSNLLKLSRFPQ-VYVKFSALFRVSRMPFPYQDL 276 (342)
Q Consensus 206 ~----~~----~~~l~~l~~~~P~lk~vl~H~G~~~p~~~~~~~~~~~~~~~l~~~~N-vy~~~S~~~~~~~~~~~~~~~ 276 (342)
| .. ...+..++ +.+++.+++-+.-... ......+.+.+|++.|| +.+|.|..- .
T Consensus 105 P~~~~~s~~~l~~y~~~ia-~~~~~pi~iYn~P~~t-----g~~ls~~~l~~L~~~~nv~giK~s~~~-----------~ 167 (289)
T PF00701_consen 105 PYYFKPSQEELIDYFRAIA-DATDLPIIIYNNPART-----GNDLSPETLARLAKIPNVVGIKDSSGD-----------L 167 (289)
T ss_dssp STSSSCCHHHHHHHHHHHH-HHSSSEEEEEEBHHHH-----SSTSHHHHHHHHHTSTTEEEEEESSSB-----------H
T ss_pred cccccchhhHHHHHHHHHH-hhcCCCEEEEECCCcc-----ccCCCHHHHHHHhcCCcEEEEEcCchh-----------H
Confidence 1 01 12455556 4467777776652100 00112334556777888 456655321 1
Q ss_pred hhHHHHHHHhcCCC-cEEEccC
Q 019335 277 SSPLSQVVSSFGAN-RVMWGSD 297 (342)
Q Consensus 277 ~~~l~~~i~~~G~d-RilfGSD 297 (342)
..+.++++..+.+ +++-|+|
T Consensus 168 -~~~~~~~~~~~~~~~v~~G~d 188 (289)
T PF00701_consen 168 -ERLIQLLRAVGPDFSVFCGDD 188 (289)
T ss_dssp -HHHHHHHHHSSTTSEEEESSG
T ss_pred -HHHHHHhhhcccCeeeecccc
Confidence 2344555655444 3455655
No 274
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=42.80 E-value=56 Score=29.81 Aligned_cols=48 Identities=21% Similarity=0.097 Sum_probs=38.2
Q ss_pred cchHHHHHHHHHhcCCceEEEecCCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEEecc
Q 019335 146 DVIGIKQLEQLILKDGFRAVRFNPYLWPSGQQMTNEVGKAMFSKAGELGVPVGFMCMK 203 (342)
Q Consensus 146 ~~~~~~eler~~~~~g~~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH~~~ 203 (342)
++++++...|.+++.|+.||++... ...-+..+.+.+.|+||.-|.|-
T Consensus 91 ~e~a~~na~rl~~eaGa~aVkiEgg----------~~~~~~i~~l~~~gIpV~gHiGl 138 (263)
T TIGR00222 91 PEQALKNAARVMQETGANAVKLEGG----------EWLVETVQMLTERGVPVVGHLGL 138 (263)
T ss_pred HHHHHHHHHHHHHHhCCeEEEEcCc----------HhHHHHHHHHHHCCCCEEEecCC
Confidence 5667777888888889999998842 33456779999999999988873
No 275
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=42.20 E-value=2.7e+02 Score=25.36 Aligned_cols=122 Identities=11% Similarity=0.043 Sum_probs=61.6
Q ss_pred CChHHHHHHhHHCCCceEEEeCC-CCCccchHHHHHHHHhCCCcEEEEEEcCCCCc-------chHHHHHHHHHhcC-C-
Q 019335 92 GHVDFLLQCMEEASVDGALIVQP-INHKFDHSLVTSVLKKYPSKFVGCCLANPAED-------VIGIKQLEQLILKD-G- 161 (342)
Q Consensus 92 ~~~~~ll~~md~~GI~~~v~~~~-~~~~~~N~~~~~~~~~~p~r~~g~~~i~p~~~-------~~~~~eler~~~~~-g- 161 (342)
.++.+.|+.|.+.|++..++-+. ...+.+.+.+.+.++++...|.-+..-.|.-. .+..+.+-+.+.+. .
T Consensus 58 ~~~~eaL~~L~~~G~~~V~VQplhiipG~Ey~~l~~~v~~~~~~F~~i~~g~PLL~~~g~~~~~~D~~~va~aL~~~~~~ 137 (262)
T PF06180_consen 58 DSPEEALAKLADEGYTEVVVQPLHIIPGEEYEKLRATVEAYKHDFKKIVLGRPLLYTMGQENSPEDYEAVAEALAEEFPK 137 (262)
T ss_dssp --HHHHHHHHHHCT--EEEEEE--SCSSHHHHHHHHHHHHHCCCSSEEEEE--SCSS-----SHHHHHHHHHHHHCCS-T
T ss_pred CCHHHHHHHHHHCCCCEEEEeecceeCcHhHHHHHHHHHHhhccCCeEEecccccccccccCChHHHHHHHHHHHHhccc
Confidence 57899999999999999876543 23566677888888887765543332233221 22233333333221 1
Q ss_pred ---ceEEEecCCCCCCCCcCCcHHHHHHHHHHhhhC-CeEEEEeccCCCCCHHHHHHHHH
Q 019335 162 ---FRAVRFNPYLWPSGQQMTNEVGKAMFSKAGELG-VPVGFMCMKGLNLHISEIEELCT 217 (342)
Q Consensus 162 ---~~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e~~-lpv~iH~~~~~~~~~~~l~~l~~ 217 (342)
=.++.+.... .....+..+..+=..+.+++ -.|.+=+-+|.|. ++++..-++
T Consensus 138 ~~~~~a~vlmGHG---t~h~an~~Y~~l~~~l~~~~~~~v~vgtvEG~P~-~~~vi~~L~ 193 (262)
T PF06180_consen 138 KRKDEAVVLMGHG---TPHPANAAYSALQAMLKKHGYPNVFVGTVEGYPS-LEDVIARLK 193 (262)
T ss_dssp T-TTEEEEEEE------SCHHHHHHHHHHHHHHCCT-TTEEEEETTSSSB-HHHHHHHHH
T ss_pred cCCCCEEEEEeCC---CCCCccHHHHHHHHHHHhCCCCeEEEEEeCCCCC-HHHHHHHHH
Confidence 1234444321 12233455555555566666 4477666666433 454444333
No 276
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=42.05 E-value=3.2e+02 Score=26.10 Aligned_cols=101 Identities=15% Similarity=0.131 Sum_probs=46.8
Q ss_pred HHHHHHhHHCCCceEEEeCCCCCccchHHHHHHHHhCC-CcEEEEEEcCCCCcchHHHHHHHHHhcCCceEEEecCCCCC
Q 019335 95 DFLLQCMEEASVDGALIVQPINHKFDHSLVTSVLKKYP-SKFVGCCLANPAEDVIGIKQLEQLILKDGFRAVRFNPYLWP 173 (342)
Q Consensus 95 ~~ll~~md~~GI~~~v~~~~~~~~~~N~~~~~~~~~~p-~r~~g~~~i~p~~~~~~~~eler~~~~~g~~Gvk~~~~~~~ 173 (342)
-.+.+.+++.||+..=+--|.....+.+.+.++.+.-+ .++.+++ .+. .+.+++. .+.|+..|++......
T Consensus 26 ~~ia~~L~~~Gv~~IEvG~p~~~~~~~e~i~~i~~~~~~~~i~~~~--r~~-----~~di~~a-~~~g~~~i~i~~~~Sd 97 (365)
T TIGR02660 26 LAIARALDEAGVDELEVGIPAMGEEERAVIRAIVALGLPARLMAWC--RAR-----DADIEAA-ARCGVDAVHISIPVSD 97 (365)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHcCCCcEEEEEc--CCC-----HHHHHHH-HcCCcCEEEEEEccCH
Confidence 34566899999998765333222222233444444433 2443333 221 1334444 2456655554422100
Q ss_pred ------CCCcCC--cHHHHHHHHHHhhhCCeEEEEecc
Q 019335 174 ------SGQQMT--NEVGKAMFSKAGELGVPVGFMCMK 203 (342)
Q Consensus 174 ------~g~~l~--~~~~~~~~~~a~e~~lpv~iH~~~ 203 (342)
-+.... -+...+..+++.++|+.|.+.+.+
T Consensus 98 ~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~~~~ed 135 (365)
T TIGR02660 98 LQIEAKLRKDRAWVLERLARLVSFARDRGLFVSVGGED 135 (365)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEEEeecC
Confidence 001111 123445666666677766666543
No 277
>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....
Probab=41.99 E-value=1.8e+02 Score=27.03 Aligned_cols=25 Identities=16% Similarity=0.133 Sum_probs=9.6
Q ss_pred CCcCCcHHHHHHHHHHhhhCCeEEE
Q 019335 175 GQQMTNEVGKAMFSKAGELGVPVGF 199 (342)
Q Consensus 175 g~~l~~~~~~~~~~~a~e~~lpv~i 199 (342)
|..+..+.+..+.+.|+++|+.|.+
T Consensus 162 G~~~~~~~l~~l~~~~~~~~~~ii~ 186 (363)
T PF00155_consen 162 GSVLSLEELRELAELAREYNIIIIV 186 (363)
T ss_dssp TBB--HHHHHHHHHHHHHTTSEEEE
T ss_pred ccccccccccchhhhhcccccceee
Confidence 3333444444444444444444433
No 278
>COG4464 CapC Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=41.79 E-value=54 Score=28.96 Aligned_cols=37 Identities=22% Similarity=0.283 Sum_probs=24.2
Q ss_pred eeeeeeccCCCCccCCCCCCCCCCCCCCCCChHHHHHHhH---HCCCceEEEeC
Q 019335 63 IDSHLHVWASPEEAADKFPYFPGQEPTLPGHVDFLLQCME---EASVDGALIVQ 113 (342)
Q Consensus 63 ID~H~Hl~~~~~~~~~~~p~~~~~~~~~~~~~~~ll~~md---~~GI~~~v~~~ 113 (342)
||+|+|+- ++- ++ .+.+.++-++.|+ +.||+..|..+
T Consensus 2 IDIH~HIl-p~i---DD----------Gp~s~eesl~ml~~A~~qGvt~iVaTs 41 (254)
T COG4464 2 IDIHSHIL-PDI---DD----------GPKSLEESLAMLREAVRQGVTKIVATS 41 (254)
T ss_pred cccccccc-CCC---CC----------CCCcHHHHHHHHHHHHHcCceEEeecc
Confidence 89999996 321 11 1346666666554 67999988654
No 279
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=41.77 E-value=1.6e+02 Score=26.80 Aligned_cols=103 Identities=21% Similarity=0.203 Sum_probs=58.8
Q ss_pred HHHHHHHhhhCCeEEEEeccCCCCCHHHHHH---HHHhCCCCcEEecccCCC-C-CCCCchhhHhHHHHhccc---CCCc
Q 019335 184 KAMFSKAGELGVPVGFMCMKGLNLHISEIEE---LCTEFPSTTVLLDHLAFC-K-PPSNDEESLAFSNLLKLS---RFPQ 255 (342)
Q Consensus 184 ~~~~~~a~e~~lpv~iH~~~~~~~~~~~l~~---l~~~~P~lk~vl~H~G~~-~-p~~~~~~~~~~~~~~~l~---~~~N 255 (342)
.++++.+.+.|.||.+=.+.. ..+.++.. .+.+.-+-++++.|+|.. . |.. .....+..+..+. ..|
T Consensus 122 ~~LL~~~a~~gkPVilk~G~~--~t~~e~~~Ave~i~~~Gn~~i~l~~rG~s~y~~~~--~~~~dl~~i~~lk~~~~~p- 196 (260)
T TIGR01361 122 FELLKEVGKQGKPVLLKRGMG--NTIEEWLYAAEYILSSGNGNVILCERGIRTFEKAT--RNTLDLSAVPVLKKETHLP- 196 (260)
T ss_pred HHHHHHHhcCCCcEEEeCCCC--CCHHHHHHHHHHHHHcCCCcEEEEECCCCCCCCCC--cCCcCHHHHHHHHHhhCCC-
Confidence 579999999999999877633 23444443 444444457899999773 2 211 1223444433332 455
Q ss_pred EEEecCcccccccCCCCCCCchhHHHHHHHhcCCCcEEEccCC
Q 019335 256 VYVKFSALFRVSRMPFPYQDLSSPLSQVVSSFGANRVMWGSDF 298 (342)
Q Consensus 256 vy~~~S~~~~~~~~~~~~~~~~~~l~~~i~~~G~dRilfGSD~ 298 (342)
|-+|.+.... ..+....+....-.+|++=++..+-+
T Consensus 197 V~~ds~Hs~G-------~r~~~~~~~~aAva~Ga~gl~iE~H~ 232 (260)
T TIGR01361 197 IIVDPSHAAG-------RRDLVIPLAKAAIAAGADGLMIEVHP 232 (260)
T ss_pred EEEcCCCCCC-------ccchHHHHHHHHHHcCCCEEEEEeCC
Confidence 6665553321 11122334444446799988888765
No 280
>KOG3968 consensus Atrazine chlorohydrolase/guanine deaminase [Nucleotide transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=41.51 E-value=66 Score=31.27 Aligned_cols=105 Identities=14% Similarity=0.096 Sum_probs=53.6
Q ss_pred HHHHHHhHHCCCceEEEeCCCCCccchHHHHHHHHhCCCc-EEEEEEcC------CCC---cchHHHHHHHHHh---cCC
Q 019335 95 DFLLQCMEEASVDGALIVQPINHKFDHSLVTSVLKKYPSK-FVGCCLAN------PAE---DVIGIKQLEQLIL---KDG 161 (342)
Q Consensus 95 ~~ll~~md~~GI~~~v~~~~~~~~~~N~~~~~~~~~~p~r-~~g~~~i~------p~~---~~~~~~eler~~~---~~g 161 (342)
...+++|=++|.+-+..+.. ........+++.+.+...| ++|-+..+ |.. .+..++.-++.+. +.+
T Consensus 123 ~~vv~~mL~~GTTt~~~f~~-~~~~s~~ll~~~~~~~G~R~~igkv~m~~~~~~~p~~~~~~E~si~~t~~~i~~~~~~~ 201 (439)
T KOG3968|consen 123 QRVVKEMLRAGTTTVEYFST-LHLDSELLLARAAIRAGQRALIGKVCMDCNAHAVPKGVETTEESIESTEDLIPKLEKLK 201 (439)
T ss_pred HHHHHHHHHcCceehhhhhc-cCchhHHHHHHHHHHhCCceeeeeehhccCCCCCCccchhHHHHHHHHHHHHHHHHhhc
Confidence 34577888999988776652 2222334566776666544 45543322 211 1223333333332 111
Q ss_pred ceEEE--ecCCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEEecc
Q 019335 162 FRAVR--FNPYLWPSGQQMTNEVGKAMFSKAGELGVPVGFMCMK 203 (342)
Q Consensus 162 ~~Gvk--~~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH~~~ 203 (342)
--++. +.+.. +.......++...+.++.+++++..|...
T Consensus 202 ~~~~~~~vt~~f---a~~c~k~v~~~l~~lak~~~l~~q~hIse 242 (439)
T KOG3968|consen 202 REKVNPIVTPRF---AASCSKGVFEELSKLAKYHNLHIQIHISE 242 (439)
T ss_pred cCCCCCcccccc---cCCCcchhHHHHHHHHHhhhhhhhhhhhh
Confidence 11111 01111 12223456777777777799999999864
No 281
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=41.41 E-value=63 Score=32.54 Aligned_cols=69 Identities=19% Similarity=0.187 Sum_probs=39.4
Q ss_pred HHHHHHHHHhcCCceEEEecCCCCCCCCcCCcHHHHHHHHHHhhh-CCeEEEEeccCC---CCCHHH-------HHHHHH
Q 019335 149 GIKQLEQLILKDGFRAVRFNPYLWPSGQQMTNEVGKAMFSKAGEL-GVPVGFMCMKGL---NLHISE-------IEELCT 217 (342)
Q Consensus 149 ~~~eler~~~~~g~~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e~-~lpv~iH~~~~~---~~~~~~-------l~~l~~ 217 (342)
+.+.++.+ ...|+.-|.|-|. .-++...++..|.++ ..||.+|.-.|. ++..++ ...-++
T Consensus 139 A~ElI~~L-~~~G~~yv~fKPG--------tIeqI~svi~IAka~P~~pIilq~egGraGGHHSweDld~llL~tYs~lR 209 (717)
T COG4981 139 AVELIEEL-GDDGFPYVAFKPG--------TIEQIRSVIRIAKANPTFPIILQWEGGRAGGHHSWEDLDDLLLATYSELR 209 (717)
T ss_pred HHHHHHHH-hhcCceeEEecCC--------cHHHHHHHHHHHhcCCCCceEEEEecCccCCccchhhcccHHHHHHHHHh
Confidence 45555444 3446665655553 235777888888886 788888864321 222222 233456
Q ss_pred hCCCCcEEe
Q 019335 218 EFPSTTVLL 226 (342)
Q Consensus 218 ~~P~lk~vl 226 (342)
+++++.+|+
T Consensus 210 ~~~NIvl~v 218 (717)
T COG4981 210 SRDNIVLCV 218 (717)
T ss_pred cCCCEEEEe
Confidence 777765544
No 282
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=40.90 E-value=2e+02 Score=27.17 Aligned_cols=90 Identities=16% Similarity=0.127 Sum_probs=53.8
Q ss_pred HHHhHHCCCceEEEeCCCCCccchHHHHHHHHhCCCcEEEEEEcCCCCcchHHHHHHHHHhcCCceEEEecCCCCCCCCc
Q 019335 98 LQCMEEASVDGALIVQPINHKFDHSLVTSVLKKYPSKFVGCCLANPAEDVIGIKQLEQLILKDGFRAVRFNPYLWPSGQQ 177 (342)
Q Consensus 98 l~~md~~GI~~~v~~~~~~~~~~N~~~~~~~~~~p~r~~g~~~i~p~~~~~~~~eler~~~~~g~~Gvk~~~~~~~~g~~ 177 (342)
+..+.++|-+-.=+.-+ ...+-+.+-+..+..| +--++-+|-+..- ++..+ +.|+-++|++|. ..
T Consensus 40 I~~L~~aGceiVRvavp--~~~~A~al~~I~~~~~--iPlVADIHFd~~l-Al~a~-----~~g~dkiRINPG-----Ni 104 (346)
T TIGR00612 40 IRALEEAGCDIVRVTVP--DRESAAAFEAIKEGTN--VPLVADIHFDYRL-AALAM-----AKGVAKVRINPG-----NI 104 (346)
T ss_pred HHHHHHcCCCEEEEcCC--CHHHHHhHHHHHhCCC--CCEEEeeCCCcHH-HHHHH-----HhccCeEEECCC-----CC
Confidence 44667778775543222 1222334455555554 2223455554321 32322 568889999985 23
Q ss_pred CCcHHHHHHHHHHhhhCCeEEEEec
Q 019335 178 MTNEVGKAMFSKAGELGVPVGFMCM 202 (342)
Q Consensus 178 l~~~~~~~~~~~a~e~~lpv~iH~~ 202 (342)
-+++.+.++.+.|.++|+|+=|=+-
T Consensus 105 g~~e~v~~vv~~ak~~~ipIRIGVN 129 (346)
T TIGR00612 105 GFRERVRDVVEKARDHGKAMRIGVN 129 (346)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEecC
Confidence 3467999999999999999966543
No 283
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=40.89 E-value=1.8e+02 Score=28.06 Aligned_cols=51 Identities=22% Similarity=0.244 Sum_probs=36.0
Q ss_pred HHHHHHHHhcCCceEEE-ecCCCCCCCCcCCcHHHHHHHHHHhhhCCeEE---EEe
Q 019335 150 IKQLEQLILKDGFRAVR-FNPYLWPSGQQMTNEVGKAMFSKAGELGVPVG---FMC 201 (342)
Q Consensus 150 ~~eler~~~~~g~~Gvk-~~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~---iH~ 201 (342)
.++||++..+..++-+- -+|. .|.|.--+.+.+..+-+.|++||+.|. ||.
T Consensus 147 ~~~LE~~~~~~~vkl~iLCnPH-NP~Grvwt~eeL~~i~elc~kh~v~VISDEIHa 201 (388)
T COG1168 147 FDALEKAFVDERVKLFILCNPH-NPTGRVWTKEELRKIAELCLRHGVRVISDEIHA 201 (388)
T ss_pred HHHHHHHHhcCCccEEEEeCCC-CCCCccccHHHHHHHHHHHHHcCCEEEeecccc
Confidence 57899887655443332 2343 255777778899999999999999994 554
No 284
>PRK08508 biotin synthase; Provisional
Probab=40.77 E-value=2.9e+02 Score=25.24 Aligned_cols=114 Identities=17% Similarity=0.121 Sum_probs=57.4
Q ss_pred CChHHHHHHhH---HCCCceEEEeCCCC--CccchHHHHHHHH----hCCCcEEEEEEcCCCCcchHHHHHHHHHhcCCc
Q 019335 92 GHVDFLLQCME---EASVDGALIVQPIN--HKFDHSLVTSVLK----KYPSKFVGCCLANPAEDVIGIKQLEQLILKDGF 162 (342)
Q Consensus 92 ~~~~~ll~~md---~~GI~~~v~~~~~~--~~~~N~~~~~~~~----~~p~r~~g~~~i~p~~~~~~~~eler~~~~~g~ 162 (342)
-++|++++..+ +.|+...+++.... .....+++.++++ ..|+ +..++...... .++++++ ++.|+
T Consensus 40 ~s~eeI~~~a~~a~~~g~~~~~lv~sg~~~~~~~~e~~~ei~~~ik~~~p~-l~i~~s~G~~~----~e~l~~L-k~aGl 113 (279)
T PRK08508 40 KDIEQIVQEAKMAKANGALGFCLVTSGRGLDDKKLEYVAEAAKAVKKEVPG-LHLIACNGTAS----VEQLKEL-KKAGI 113 (279)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEeccCCCCcccHHHHHHHHHHHHhhCCC-cEEEecCCCCC----HHHHHHH-HHcCC
Confidence 46788877654 47998887764322 1223456665554 2354 22222222222 2455555 56777
Q ss_pred eEEEecCCCCCC--CCcCCcHHHHH---HHHHHhhhCCeEEEEeccCCCCCHHH
Q 019335 163 RAVRFNPYLWPS--GQQMTNEVGKA---MFSKAGELGVPVGFMCMKGLNLHISE 211 (342)
Q Consensus 163 ~Gvk~~~~~~~~--g~~l~~~~~~~---~~~~a~e~~lpv~iH~~~~~~~~~~~ 211 (342)
..+-+.....+. ........+++ ..+.|.+.|+.+.-+.-.|.....++
T Consensus 114 d~~~~~lEt~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~sg~I~GlGEt~ed 167 (279)
T PRK08508 114 FSYNHNLETSKEFFPKICTTHTWEERFQTCENAKEAGLGLCSGGIFGLGESWED 167 (279)
T ss_pred CEEcccccchHHHhcCCCCCCCHHHHHHHHHHHHHcCCeecceeEEecCCCHHH
Confidence 766544221000 01111223444 55668899998865544443344443
No 285
>PF02811 PHP: PHP domain; InterPro: IPR004013 The PHP (Polymerase and Histidinol Phosphatase) domain is a putative phosphoesterase domain. This family is often associated with an N-terminal region IPR003141 from INTERPRO.; GO: 0003824 catalytic activity; PDB: 2WJE_A 3QY8_A 2WJD_A 2WJF_A 1PB0_B 1M68_A 1M65_A 3E38_B 2W9M_A 3E0F_A ....
Probab=40.72 E-value=46 Score=27.30 Aligned_cols=54 Identities=22% Similarity=0.167 Sum_probs=32.4
Q ss_pred eeeeeeccCCCCccCCCCCCCCCCCCCCCCChHHHHHHhHHCCCceEEEeCCCCCccchHHHHHHHHhC
Q 019335 63 IDSHLHVWASPEEAADKFPYFPGQEPTLPGHVDFLLQCMEEASVDGALIVQPINHKFDHSLVTSVLKKY 131 (342)
Q Consensus 63 ID~H~Hl~~~~~~~~~~~p~~~~~~~~~~~~~~~ll~~md~~GI~~~v~~~~~~~~~~N~~~~~~~~~~ 131 (342)
||.|+|-..+ ...| ..+++++++.+.+.|++...+..=... .......+.+++.
T Consensus 1 iDlH~HT~~s---------~~dg-----~~~~~e~v~~A~~~Gl~~i~iTDH~~~-~~~~~~~~~~~~~ 54 (175)
T PF02811_consen 1 IDLHVHTKYS---------ILDG-----KDSPEEYVEQAKEKGLDAIAITDHNNF-AGYPDFYKEAKKK 54 (175)
T ss_dssp EEEEB--TTT---------SSTS-----SSSHHHHHHHHHHTTESEEEEEEETTT-TTHHHHHHHHHHT
T ss_pred CCccccccCc---------chhh-----cCCHHHHHHHHHHcCCCEEEEcCCccc-ccchHHHHHHHhc
Confidence 7999997532 0011 348999999999999998887753111 1123344555553
No 286
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=40.67 E-value=3e+02 Score=25.47 Aligned_cols=54 Identities=17% Similarity=0.153 Sum_probs=38.1
Q ss_pred HHHHHHHHHhcCCceEEEecCCCCCCCCcCCcHHHHHHHHHHhhh---CCeEEEEecc
Q 019335 149 GIKQLEQLILKDGFRAVRFNPYLWPSGQQMTNEVGKAMFSKAGEL---GVPVGFMCMK 203 (342)
Q Consensus 149 ~~~eler~~~~~g~~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e~---~lpv~iH~~~ 203 (342)
+.+++-+++.+.|+.||-..... .....++.++-..+++.+.+. .+||..+++.
T Consensus 26 a~~~lv~~li~~Gv~gi~~~Gtt-GE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g~ 82 (299)
T COG0329 26 ALRRLVEFLIAAGVDGLVVLGTT-GESPTLTLEERKEVLEAVVEAVGGRVPVIAGVGS 82 (299)
T ss_pred HHHHHHHHHHHcCCCEEEECCCC-ccchhcCHHHHHHHHHHHHHHHCCCCcEEEecCC
Confidence 45555554467899999887653 123467888888888888774 4889998874
No 287
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=40.65 E-value=2.7e+02 Score=26.65 Aligned_cols=181 Identities=12% Similarity=0.131 Sum_probs=0.0
Q ss_pred HHHHHHhHHCCCceEEEe------CCCCCccchHHHHHHHHhCCCcEEEEEEcCCCCcchHHHH-------HHHHHhcCC
Q 019335 95 DFLLQCMEEASVDGALIV------QPINHKFDHSLVTSVLKKYPSKFVGCCLANPAEDVIGIKQ-------LEQLILKDG 161 (342)
Q Consensus 95 ~~ll~~md~~GI~~~v~~------~~~~~~~~N~~~~~~~~~~p~r~~g~~~i~p~~~~~~~~e-------ler~~~~~g 161 (342)
..+++.|.++|.++...+ ....+...-..+.+.++++ .+.-++-|+|. .++. ++.. ++.|
T Consensus 17 ~~yi~~a~~~Gf~~iFTSL~ipe~~~~~~~~~~~~l~~~a~~~--~~~v~~Disp~----~l~~lg~~~~dl~~~-~~lG 89 (357)
T PF05913_consen 17 KAYIEKAAKYGFKRIFTSLHIPEDDPEDYLERLKELLKLAKEL--GMEVIADISPK----VLKKLGISYDDLSFF-KELG 89 (357)
T ss_dssp HHHHHHHHCTTEEEEEEEE---------HHHHHHHHHHHHHHC--T-EEEEEE-CC----HHHTTT-BTTBTHHH-HHHT
T ss_pred HHHHHHHHHCCCCEEECCCCcCCCCHHHHHHHHHHHHHHHHHC--CCEEEEECCHH----HHHHcCCCHHHHHHH-HHcC
Q ss_pred ceEEEecCCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEEeccCCCCCHHHHHHHHHhCCC-CcEEecccCCCCCCCCchh
Q 019335 162 FRAVRFNPYLWPSGQQMTNEVGKAMFSKAGELGVPVGFMCMKGLNLHISEIEELCTEFPS-TTVLLDHLAFCKPPSNDEE 240 (342)
Q Consensus 162 ~~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH~~~~~~~~~~~l~~l~~~~P~-lk~vl~H~G~~~p~~~~~~ 240 (342)
+.|+|+.-.. ..+.+-+.... |+.|.+-.. ......+..+.+.-++ -++..+|=..|.|++--..
T Consensus 90 i~~lRlD~Gf----------~~~~ia~ls~n-g~~I~LNAS---ti~~~~l~~L~~~~~~~~~i~a~HNfYPr~~TGLs~ 155 (357)
T PF05913_consen 90 IDGLRLDYGF----------SGEEIAKLSKN-GIKIELNAS---TITEEELDELIKYGANFSNIIACHNFYPRPYTGLSE 155 (357)
T ss_dssp -SEEEESSS-----------SCHHHHHHTTT--SEEEEETT---T--CCHHHHHCCTT--GGGEEEE---B-STT-SB-H
T ss_pred CCEEEECCCC----------CHHHHHHHHhC-CCEEEEECC---CCChHHHHHHHHhcCCHHHeEEEecccCCCCCCCCH
Q ss_pred hHhHHHHhcccCCCcEEEecCcccccc-------cCCCC------CCCchhHHHHHHHhcCCCcEEEccCCC
Q 019335 241 SLAFSNLLKLSRFPQVYVKFSALFRVS-------RMPFP------YQDLSSPLSQVVSSFGANRVMWGSDFP 299 (342)
Q Consensus 241 ~~~~~~~~~l~~~~Nvy~~~S~~~~~~-------~~~~~------~~~~~~~l~~~i~~~G~dRilfGSD~P 299 (342)
...-+.-..+.+++ +++.++..-. ..+-| .........+++...+.|.|+.|--++
T Consensus 156 ~~f~~~n~~~k~~g---i~~~AFI~g~~~~rGPl~~GLPTlE~hR~~~p~~aa~~L~~~~~iD~V~IGD~~~ 224 (357)
T PF05913_consen 156 EFFIEKNQLLKEYG---IKTAAFIPGDENKRGPLYEGLPTLEKHRNLPPYAAALELFALGLIDDVIIGDPFA 224 (357)
T ss_dssp HHHHHHHHHHHHTT----EEEEEE--SSS-BTTT-S--BSBGGGTTS-HHHHHHHHHHTTT--EEEE-SC--
T ss_pred HHHHHHHHHHHHCC---CcEEEEecCCCcccCCccCCCCccHHHcCCCHHHHHHHHHhcCCCCEEEECCCcC
No 288
>PF01136 Peptidase_U32: Peptidase family U32 This is family U32 in the peptidase classification. ; InterPro: IPR001539 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belonging to MEROPS peptidase family U32 (clan U-). The type example is collagenase (gene prtC) from Porphyromonas gingivalis (Bacteroides gingivalis) [], which is an enzyme that degrades type I collagen and that seems to require a metal cofactor. The product of PrtC is evolutionary related to a number of uncharacterised proteins with a well conserved region containing two cysteines.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=40.46 E-value=2.5e+02 Score=24.51 Aligned_cols=86 Identities=22% Similarity=0.297 Sum_probs=54.1
Q ss_pred hHHHHHHhHHCCCceEEEeCCCCCccchHHHHHHHHhC-CC-cEEEEEEcCCCCcchHHHHHHHHHhcCCceEEEecCCC
Q 019335 94 VDFLLQCMEEASVDGALIVQPINHKFDHSLVTSVLKKY-PS-KFVGCCLANPAEDVIGIKQLEQLILKDGFRAVRFNPYL 171 (342)
Q Consensus 94 ~~~ll~~md~~GI~~~v~~~~~~~~~~N~~~~~~~~~~-p~-r~~g~~~i~p~~~~~~~~eler~~~~~g~~Gvk~~~~~ 171 (342)
.+.+++.+.+.||++.++. |-.++.++++. |+ .+.+-..++..... .++.+ ++.|+.++.+.+..
T Consensus 4 ~~~~l~~l~~~g~dgi~v~--------~~g~~~~~k~~~~~~~i~~~~~~nv~N~~----s~~~~-~~~G~~~i~ls~EL 70 (233)
T PF01136_consen 4 LEKYLDKLKELGVDGILVS--------NPGLLELLKELGPDLKIIADYSLNVFNSE----SARFL-KELGASRITLSPEL 70 (233)
T ss_pred HHHHHHHHHhCCCCEEEEc--------CHHHHHHHHHhCCCCcEEEecCccCCCHH----HHHHH-HHcCCCEEEECccC
Confidence 5678889999999997664 33466677654 54 45544455555542 34444 56799999888653
Q ss_pred CCCCCcCCcHHHHHHHHHHhhh-CCeEEEEec
Q 019335 172 WPSGQQMTNEVGKAMFSKAGEL-GVPVGFMCM 202 (342)
Q Consensus 172 ~~~g~~l~~~~~~~~~~~a~e~-~lpv~iH~~ 202 (342)
+ +..+-+.++.. ++++.+-+.
T Consensus 71 -------~---~~ei~~i~~~~~~~~~Ev~v~ 92 (233)
T PF01136_consen 71 -------S---LEEIKEIAENSPGVPLEVIVH 92 (233)
T ss_pred -------C---HHHHHHHHHhCCCCeEEEEEe
Confidence 2 34455555555 666655443
No 289
>PRK02308 uvsE putative UV damage endonuclease; Provisional
Probab=40.31 E-value=85 Score=29.22 Aligned_cols=68 Identities=12% Similarity=0.049 Sum_probs=35.9
Q ss_pred hcCCce---EEEecCCCCCCCCcCCcHHHHHHHHHHhh-hCCeEEEEeccCCCCCHHHHHHHHHhCCCCcEEec
Q 019335 158 LKDGFR---AVRFNPYLWPSGQQMTNEVGKAMFSKAGE-LGVPVGFMCMKGLNLHISEIEELCTEFPSTTVLLD 227 (342)
Q Consensus 158 ~~~g~~---Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e-~~lpv~iH~~~~~~~~~~~l~~l~~~~P~lk~vl~ 227 (342)
...|+. .|.+|+.....+..-.-.++...++.+.+ .+..+.+-...+ ...+.++..++++.. +.+|++
T Consensus 140 ~~lG~~~~~~vViHpG~~~~~ke~al~r~~~~l~~l~~~~~~~L~LEN~~~-~~t~~ell~I~e~~~-ipv~~D 211 (303)
T PRK02308 140 DLMGIDDSSKINIHVGGAYGDKEKALERFIENIKKLPESIKKRLTLENDDK-TYTVEELLYICEKLG-IPVVFD 211 (303)
T ss_pred HHCCCCCCCEEEECCCccCCCHHHHHHHHHHHHHHhhHHhCCEEEEeeCCC-CCCHHHHHHHHHHcC-CCEEEe
Confidence 467887 78888753110111111233333333222 355555554443 266778888888763 567776
No 290
>COG1387 HIS2 Histidinol phosphatase and related hydrolases of the PHP family [Amino acid transport and metabolism / General function prediction only]
Probab=39.90 E-value=2.7e+02 Score=24.75 Aligned_cols=36 Identities=22% Similarity=0.230 Sum_probs=26.8
Q ss_pred eeeeeeeccCCCCccCCCCCCCCCCCCCCCCChHHHHHHhHHCCCceEEEeC
Q 019335 62 IIDSHLHVWASPEEAADKFPYFPGQEPTLPGHVDFLLQCMEEASVDGALIVQ 113 (342)
Q Consensus 62 iID~H~Hl~~~~~~~~~~~p~~~~~~~~~~~~~~~ll~~md~~GI~~~v~~~ 113 (342)
.+|.|+|-..+ .+ ..++.++++...+.|.....+..
T Consensus 2 ~~D~H~HT~~s-----------dg-----~~~~~e~~~~A~~~g~~~~~iTd 37 (237)
T COG1387 2 KIDLHTHTVFS-----------DG-----EATPEEMVEAAIELGLEYIAITD 37 (237)
T ss_pred CcccccCcccc-----------cC-----CCCHHHHHHHHHHcCCeEEEEec
Confidence 47999997533 11 35677778888999999888775
No 291
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=39.89 E-value=3.5e+02 Score=25.98 Aligned_cols=52 Identities=15% Similarity=0.245 Sum_probs=31.9
Q ss_pred HHHHHHHHHhcCCceEEEecCCCCCCCCcCCcHHHHHHHHHHhh-hCCeEEEEeccC
Q 019335 149 GIKQLEQLILKDGFRAVRFNPYLWPSGQQMTNEVGKAMFSKAGE-LGVPVGFMCMKG 204 (342)
Q Consensus 149 ~~~eler~~~~~g~~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e-~~lpv~iH~~~~ 204 (342)
.+.++-+.+.+.|...|.+--.. |. +.=.+...+++.+.+ .++++.+|+++.
T Consensus 146 ~l~~~~~~~~~~Ga~~I~l~DT~---G~-~~P~~v~~lv~~l~~~~~~~l~~H~Hnd 198 (378)
T PRK11858 146 FLIEFAKAAEEAGADRVRFCDTV---GI-LDPFTMYELVKELVEAVDIPIEVHCHND 198 (378)
T ss_pred HHHHHHHHHHhCCCCEEEEeccC---CC-CCHHHHHHHHHHHHHhcCCeEEEEecCC
Confidence 44444444467888888776432 32 222355666666544 589999999864
No 292
>PF13147 Amidohydro_4: Amidohydrolase; PDB: 3SFW_B 2FTW_A 2PUZ_B 2GOK_B 3HM7_E 3D6N_A 1XRT_A 1XRF_A 1YNY_B 1K1D_F ....
Probab=39.89 E-value=85 Score=27.71 Aligned_cols=95 Identities=15% Similarity=0.018 Sum_probs=46.6
Q ss_pred HHHHHHhHHCCCceEEEeCCCCCccchHHHHHHHHhCCCcEEEEEEcCCCCcchHHHHHHHHHhcCCceEEEecCCCCCC
Q 019335 95 DFLLQCMEEASVDGALIVQPINHKFDHSLVTSVLKKYPSKFVGCCLANPAEDVIGIKQLEQLILKDGFRAVRFNPYLWPS 174 (342)
Q Consensus 95 ~~ll~~md~~GI~~~v~~~~~~~~~~N~~~~~~~~~~p~r~~g~~~i~p~~~~~~~~eler~~~~~g~~Gvk~~~~~~~~ 174 (342)
....+.+...||+..+-..... ...+...... ....+.....+. ......++++.......+.++....
T Consensus 34 ~~~~~~~~~~G~tt~~~~~~~~----~~~~~~~~~~--~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~--- 102 (304)
T PF13147_consen 34 AAASAAALAGGVTTVVDMPGTN----PEELNRARRR--GAGYPGSGAGPR--GTTIEELEALVDLIAAEGVGFVAAY--- 102 (304)
T ss_dssp HHHHHHHHHTTEEEEEESSSSS----HHHHHHHHHH--ESEEEEECESCC--HHHHHHHHHHHHHHHHTEEEEESSS---
T ss_pred HHHHHHHHhCCEeEEecCCCCC----chhhHHHHhh--cccccccccccc--ccchHHHHHHHHHHhhcCcceeecc---
Confidence 3455667788998887643211 1122222222 111222222222 2234455555433333444444321
Q ss_pred CCcCCcHHHHHHHHHHhhhC-CeEEEEe
Q 019335 175 GQQMTNEVGKAMFSKAGELG-VPVGFMC 201 (342)
Q Consensus 175 g~~l~~~~~~~~~~~a~e~~-lpv~iH~ 201 (342)
..+..+.+.+..+.+.+.+ +++.-|+
T Consensus 103 -~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (304)
T PF13147_consen 103 -NGIEGPGLQAAIRAAHRAGVIKVVGHS 129 (304)
T ss_dssp -THHHHHHHHHHHHHHHHHTHEEEEEEC
T ss_pred -ccCCHHHHHHHHHHHHhcCCeeeeccc
Confidence 1455678889999999999 4444444
No 293
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=39.80 E-value=2.8e+02 Score=25.67 Aligned_cols=24 Identities=21% Similarity=0.218 Sum_probs=16.5
Q ss_pred cHHHHHHHHHHhhhCCeEEEEecc
Q 019335 180 NEVGKAMFSKAGELGVPVGFMCMK 203 (342)
Q Consensus 180 ~~~~~~~~~~a~e~~lpv~iH~~~ 203 (342)
.+....+++.|+|.+.||.+....
T Consensus 28 ~e~~~avi~AAee~~sPvIlq~s~ 51 (286)
T PRK12738 28 AETIQAILEVCSEMRSPVILAGTP 51 (286)
T ss_pred HHHHHHHHHHHHHHCCCEEEEcCc
Confidence 456677777777777777776653
No 294
>PRK00915 2-isopropylmalate synthase; Validated
Probab=39.42 E-value=3.5e+02 Score=27.23 Aligned_cols=44 Identities=16% Similarity=0.130 Sum_probs=22.9
Q ss_pred HHHHHhHHCCCceEEEeCCCCCccchHHHHHHHHhCCC-cEEEEE
Q 019335 96 FLLQCMEEASVDGALIVQPINHKFDHSLVTSVLKKYPS-KFVGCC 139 (342)
Q Consensus 96 ~ll~~md~~GI~~~v~~~~~~~~~~N~~~~~~~~~~p~-r~~g~~ 139 (342)
.+.+.+++.||+..=+-.|.....+.+.+.++.+..++ ++.+++
T Consensus 30 ~ia~~L~~~Gv~~IE~G~p~~s~~d~~~v~~i~~~~~~~~i~a~~ 74 (513)
T PRK00915 30 QIAKQLERLGVDVIEAGFPASSPGDFEAVKRIARTVKNSTVCGLA 74 (513)
T ss_pred HHHHHHHHcCCCEEEEcCCCCChHHHHHHHHHHhhCCCCEEEEEc
Confidence 45668899999977553332222233444444443332 444444
No 295
>PRK02925 glucuronate isomerase; Reviewed
Probab=39.28 E-value=12 Score=36.83 Aligned_cols=52 Identities=29% Similarity=0.304 Sum_probs=28.1
Q ss_pred CCCCCeeeeeeeccCCCCccCCCCCCCCCCCCCCCCChHHH-HHHhHHCCCceEEEe
Q 019335 57 PSKVKIIDSHLHVWASPEEAADKFPYFPGQEPTLPGHVDFL-LQCMEEASVDGALIV 112 (342)
Q Consensus 57 ~~~~~iID~H~Hl~~~~~~~~~~~p~~~~~~~~~~~~~~~l-l~~md~~GI~~~v~~ 112 (342)
...++|||-|+|+. |.+ +...-+|..-. ..+-..|.| -..|+.+||+-..+.
T Consensus 23 a~~lPIiDyH~Hl~-p~~-iaen~~F~n~t--elwl~gDHYkwR~Mra~GV~e~~IT 75 (466)
T PRK02925 23 AKDLPIIDYHCHLD-PKE-IAENKPFKNIT--ELWLKGDHYKWRAMRSNGVDEELIT 75 (466)
T ss_pred HhcCceeCCCCCCC-HHH-HhccCCCCCHH--HHhccCccHHHHHHHHcCCCHHHcc
Confidence 46789999999995 322 12221221100 012223333 347888888876554
No 296
>PLN02433 uroporphyrinogen decarboxylase
Probab=39.07 E-value=1.9e+02 Score=27.28 Aligned_cols=74 Identities=16% Similarity=0.037 Sum_probs=39.5
Q ss_pred HHHHHHhCCCcEEEEEEcCCC----CcchHHHHHHHHHhcCCceEEEecCCCCCCCCcCCcHHHHHHHHHHhhhCCeEE
Q 019335 124 VTSVLKKYPSKFVGCCLANPA----EDVIGIKQLEQLILKDGFRAVRFNPYLWPSGQQMTNEVGKAMFSKAGELGVPVG 198 (342)
Q Consensus 124 ~~~~~~~~p~r~~g~~~i~p~----~~~~~~~eler~~~~~g~~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~ 198 (342)
+.+..+..+++..-.+.++|. .+++..++.+++++..+-.|.-+.+.+. -...-..+.++.+.+.+.+++-+..
T Consensus 265 l~e~~~~~g~~~~l~GNi~p~ll~gt~e~i~~~v~~~i~~~~~~g~Il~~Gc~-i~~~tp~eNi~a~v~av~~~~~~~~ 342 (345)
T PLN02433 265 MADARRRLGSDVAVQGNVDPAVLFGSKEAIEKEVRDVVKKAGPQGHILNLGHG-VLVGTPEENVAHFFDVARELRYEMI 342 (345)
T ss_pred HHHHHHHhCCCeEEEeCCCchhhCCCHHHHHHHHHHHHHHcCCCCeEEecCCC-CCCCCCHHHHHHHHHHHHHhChhhh
Confidence 445555666655545556652 2344556666666655445544444320 0112234567777777777766543
No 297
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=39.07 E-value=6e+02 Score=28.52 Aligned_cols=106 Identities=12% Similarity=0.198 Sum_probs=61.8
Q ss_pred HHHHHHhHHCCCceEEEeCCCCCccchHHHHHHHHhCCCcEEEE-EE----cCCCCc---chHHHHHHHHHhcCCceEEE
Q 019335 95 DFLLQCMEEASVDGALIVQPINHKFDHSLVTSVLKKYPSKFVGC-CL----ANPAED---VIGIKQLEQLILKDGFRAVR 166 (342)
Q Consensus 95 ~~ll~~md~~GI~~~v~~~~~~~~~~N~~~~~~~~~~p~r~~g~-~~----i~p~~~---~~~~~eler~~~~~g~~Gvk 166 (342)
+..++...++||+..=++.+-.+-..-....+.+++.....-+. |. +||..+ .+...++-+.+.+.|+.-|.
T Consensus 628 ~~f~~~~~~~GidifrifD~lN~~~n~~~~~~~~~~~g~~~~~~i~yt~~~~d~~~~~~~l~y~~~~ak~l~~~Gad~I~ 707 (1143)
T TIGR01235 628 KYFVKQAAQGGIDIFRVFDSLNWVENMRVGMDAVAEAGKVVEAAICYTGDILDPARPKYDLKYYTNLAVELEKAGAHILG 707 (1143)
T ss_pred HHHHHHHHHcCCCEEEECccCcCHHHHHHHHHHHHHcCCEEEEEEEEeccCCCcCCCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 33455667899999888876443333356677788876544443 32 344432 22333344434577888777
Q ss_pred ecCCCCCCCCcCCcHHHHHHHHHHhh-hCCeEEEEeccC
Q 019335 167 FNPYLWPSGQQMTNEVGKAMFSKAGE-LGVPVGFMCMKG 204 (342)
Q Consensus 167 ~~~~~~~~g~~l~~~~~~~~~~~a~e-~~lpv~iH~~~~ 204 (342)
+--.. |. +.=.....+++.+.+ .++||.+|+++.
T Consensus 708 ikDt~---Gl-l~P~~~~~Lv~~lk~~~~~pi~~H~Hdt 742 (1143)
T TIGR01235 708 IKDMA---GL-LKPAAAKLLIKALREKTDLPIHFHTHDT 742 (1143)
T ss_pred ECCCc---CC-cCHHHHHHHHHHHHHhcCCeEEEEECCC
Confidence 65332 22 222345666666554 599999999864
No 298
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=39.07 E-value=4.9e+02 Score=27.43 Aligned_cols=129 Identities=12% Similarity=0.047 Sum_probs=84.9
Q ss_pred CChHHHHHHhHHCCCceEEEe-CCCCCccchHHHHHHHHhCCCcEEEEEEcCCCCcchHHHHHHHHHhcCCceEEEecCC
Q 019335 92 GHVDFLLQCMEEASVDGALIV-QPINHKFDHSLVTSVLKKYPSKFVGCCLANPAEDVIGIKQLEQLILKDGFRAVRFNPY 170 (342)
Q Consensus 92 ~~~~~ll~~md~~GI~~~v~~-~~~~~~~~N~~~~~~~~~~p~r~~g~~~i~p~~~~~~~~eler~~~~~g~~Gvk~~~~ 170 (342)
.++.++.+.+.+.|.+..-+. .+..++-+.+++.+..+... +++..=|.-.. ..++.+. ...|.-+|-+...
T Consensus 70 ~d~~~~a~~y~~~GA~aiSVlTe~~~F~Gs~~~l~~vr~~v~---~PvLrKDFIid---~~QI~ea-~~~GADavLLI~~ 142 (695)
T PRK13802 70 PDPAALAREYEQGGASAISVLTEGRRFLGSLDDFDKVRAAVH---IPVLRKDFIVT---DYQIWEA-RAHGADLVLLIVA 142 (695)
T ss_pred CCHHHHHHHHHHcCCcEEEEecCcCcCCCCHHHHHHHHHhCC---CCEEeccccCC---HHHHHHH-HHcCCCEeehhHh
Confidence 477888899999999766444 44444555677776655421 12221121111 1356555 4678888877643
Q ss_pred CCCCCCcCCcHHHHHHHHHHhhhCCeEEEEeccCC-----------------------CCCHHHHHHHHHhCCCCcEEec
Q 019335 171 LWPSGQQMTNEVGKAMFSKAGELGVPVGFMCMKGL-----------------------NLHISEIEELCTEFPSTTVLLD 227 (342)
Q Consensus 171 ~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH~~~~~-----------------------~~~~~~l~~l~~~~P~lk~vl~ 227 (342)
-+++..+..++++|.++|+-+++-+++.- ..++....+++...|+-.+++.
T Consensus 143 ------~L~~~~l~~l~~~a~~lGme~LvEvh~~~el~~a~~~ga~iiGINnRdL~tf~vd~~~t~~L~~~ip~~~~~Vs 216 (695)
T PRK13802 143 ------ALDDAQLKHLLDLAHELGMTVLVETHTREEIERAIAAGAKVIGINARNLKDLKVDVNKYNELAADLPDDVIKVA 216 (695)
T ss_pred ------hcCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhCCCCEEEEeCCCCccceeCHHHHHHHHhhCCCCcEEEE
Confidence 35678999999999999998877665310 1235567888888998778899
Q ss_pred ccCCCC
Q 019335 228 HLAFCK 233 (342)
Q Consensus 228 H~G~~~ 233 (342)
..|...
T Consensus 217 ESGI~~ 222 (695)
T PRK13802 217 ESGVFG 222 (695)
T ss_pred cCCCCC
Confidence 999743
No 299
>COG0648 Nfo Endonuclease IV [DNA replication, recombination, and repair]
Probab=38.64 E-value=2.4e+02 Score=26.03 Aligned_cols=134 Identities=18% Similarity=0.101 Sum_probs=68.8
Q ss_pred ChHHHHHHhHHCCCceEEEeCCCC--C-cc----chHHHHHHHHhCCCcEEEEE--EcCCCCcc---------hHHHHHH
Q 019335 93 HVDFLLQCMEEASVDGALIVQPIN--H-KF----DHSLVTSVLKKYPSKFVGCC--LANPAEDV---------IGIKQLE 154 (342)
Q Consensus 93 ~~~~ll~~md~~GI~~~v~~~~~~--~-~~----~N~~~~~~~~~~p~r~~g~~--~i~p~~~~---------~~~~ele 154 (342)
+....+++..+.|-+..-++..+. + .. ++...-+...+.+..+...+ .||+..++ ...++++
T Consensus 15 ~~~~~~~~a~~iG~na~~if~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vHApYlINl~s~~~e~~ekS~~~l~~e~~ 94 (280)
T COG0648 15 SLVNAVERAREIGLNAFEIFLVNPRVWISPPLAEDAIELFKAALKDDVQLSVHAPYLINLASPEKEKVEKSIERLIDEID 94 (280)
T ss_pred hHHHHHHHHHHcCCCEEEEEecCcccccCCCchHHHHHHHHHhhccCceEEeecceeecCCCCCHHHHHHHHHHHHHHHH
Confidence 466778888889998887663221 1 11 12222233333444444433 46665443 1345777
Q ss_pred HHHhcCCceEEEecCCCCCCCCcCCcHHHHHHHHHHhh----hCCeEEEEec--cC--CCCC---HHHHHHHHHhCCCCc
Q 019335 155 QLILKDGFRAVRFNPYLWPSGQQMTNEVGKAMFSKAGE----LGVPVGFMCM--KG--LNLH---ISEIEELCTEFPSTT 223 (342)
Q Consensus 155 r~~~~~g~~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e----~~lpv~iH~~--~~--~~~~---~~~l~~l~~~~P~lk 223 (342)
|+ +..|..-+.+||..+. +.. .+..++.+.+.+++ .++.+.+-.. .+ .+.+ +.++.++++....+.
T Consensus 95 r~-~~lG~~~lv~HpG~~~-~~~-~e~~l~~i~~~Ln~~~~~~~v~i~~e~~agegs~~g~~F~~L~eii~~~~~~~~ig 171 (280)
T COG0648 95 RC-EQLGAKLLVFHPGSYL-GQG-KEEGLNRIAEALNELLEEEGVIILLENTAGEGSGKGTQFGELAEIIDLIEEKERIG 171 (280)
T ss_pred HH-HHcCCcEEEECCcccc-CCC-HHHHHHHHHHHHHHHhhccCCeEEEEEeccccCccccchhhHHHHHHhhcccCceE
Confidence 77 6789999999986531 222 33444444444433 2333333221 11 1223 445555555555566
Q ss_pred EEeccc
Q 019335 224 VLLDHL 229 (342)
Q Consensus 224 ~vl~H~ 229 (342)
+|++=|
T Consensus 172 vCiDtc 177 (280)
T COG0648 172 VCIDTC 177 (280)
T ss_pred EEEEch
Confidence 776544
No 300
>PRK06252 methylcobalamin:coenzyme M methyltransferase; Validated
Probab=38.51 E-value=2.2e+02 Score=26.57 Aligned_cols=90 Identities=13% Similarity=-0.023 Sum_probs=49.7
Q ss_pred HHHHHHhHHCCCceEEEeCCCCCccchHHHHHHHHhCCCcEEEEEEcCC-C-----CcchHHHHHHHHHhcCCceEEEec
Q 019335 95 DFLLQCMEEASVDGALIVQPINHKFDHSLVTSVLKKYPSKFVGCCLANP-A-----EDVIGIKQLEQLILKDGFRAVRFN 168 (342)
Q Consensus 95 ~~ll~~md~~GI~~~v~~~~~~~~~~N~~~~~~~~~~p~r~~g~~~i~p-~-----~~~~~~~eler~~~~~g~~Gvk~~ 168 (342)
..+++.|.+.|++...+-. +..+.++.+..+++....+.++| . .+++..++++++++..+ .-+.
T Consensus 243 ~~~l~~~~~~g~d~~~~d~-------~~dl~~~~~~~g~~~~i~Gnidp~~~l~~gt~eeI~~~v~~~l~~g~---~Il~ 312 (339)
T PRK06252 243 TSILEEMADCGFDGISIDE-------KVDVKTAKENVGDRAALIGNVSTSFTLLNGTPEKVKAEAKKCLEDGV---DILA 312 (339)
T ss_pred hHHHHHHHhcCCCeeccCC-------CCCHHHHHHHhCCCeEEEeccCcHHHhcCCCHHHHHHHHHHHHHcCC---CEEc
Confidence 4455666666665422111 11355666777777777788888 1 23445567777765322 1233
Q ss_pred CCCCCCCCcCCcHHHHHHHHHHhhhCC
Q 019335 169 PYLWPSGQQMTNEVGKAMFSKAGELGV 195 (342)
Q Consensus 169 ~~~~~~g~~l~~~~~~~~~~~a~e~~l 195 (342)
+.+. -......+.++.+.+.+.++|.
T Consensus 313 ~gcg-i~~~tp~enl~a~v~a~~~~~~ 338 (339)
T PRK06252 313 PGCG-IAPKTPLENIKAMVEARKEYYA 338 (339)
T ss_pred CCCC-CCCCCCHHHHHHHHHHHHHhcc
Confidence 3220 0112235678889999988774
No 301
>PRK13671 hypothetical protein; Provisional
Probab=38.21 E-value=76 Score=29.51 Aligned_cols=88 Identities=9% Similarity=0.074 Sum_probs=49.4
Q ss_pred CHHHHHHHHHhCCCCcEEecccCCCCCCCCc--hhhHhHHHHhcc-cCCCcEEEecCcccccccCCCCCCCchhHHHHHH
Q 019335 208 HISEIEELCTEFPSTTVLLDHLAFCKPPSND--EESLAFSNLLKL-SRFPQVYVKFSALFRVSRMPFPYQDLSSPLSQVV 284 (342)
Q Consensus 208 ~~~~l~~l~~~~P~lk~vl~H~G~~~p~~~~--~~~~~~~~~~~l-~~~~Nvy~~~S~~~~~~~~~~~~~~~~~~l~~~i 284 (342)
|+-.+..+.+.++--++|+.=.|.+. ..+ .....|.++..+ ...=.+-+++...+.... .+.....--.++
T Consensus 16 Hl~~~~~a~~~~~~d~vi~vpSg~~~--qrg~pa~~~~~~R~~ma~~~G~DLViELP~~~a~~s----Ae~FA~gaV~lL 89 (298)
T PRK13671 16 HIYQINYIKNKFPNEKIIVILSGKYT--QRGEIAVASFEKRKKIALKYGVDKVIKLPFEYATQA----AHIFAKGAIKKL 89 (298)
T ss_pred HHHHHHHHHHhcCCCEEEEEECcCCC--CCCCCCCCCHHHHHHHHHHcCCCEEEeccHHHHhhc----hHHHHHHHHHHH
Confidence 45667777777764445554445432 122 122456654322 122347777765543221 112234455678
Q ss_pred HhcCCCcEEEccCCCCC
Q 019335 285 SSFGANRVMWGSDFPYV 301 (342)
Q Consensus 285 ~~~G~dRilfGSD~P~~ 301 (342)
+.+|.|.+.|||+++..
T Consensus 90 ~~lgvd~l~FGsE~~d~ 106 (298)
T PRK13671 90 NKEKIDKLIFGSESNDI 106 (298)
T ss_pred HHcCCCEEEECCCCCCH
Confidence 88899999999998764
No 302
>PRK12999 pyruvate carboxylase; Reviewed
Probab=38.09 E-value=5.1e+02 Score=29.08 Aligned_cols=106 Identities=13% Similarity=0.183 Sum_probs=59.0
Q ss_pred HHHHHHhHHCCCceEEEeCCCCCccchHHHHHHHHhCCCcE-EEEEEc----CCCCc---chHHHHHHHHHhcCCceEEE
Q 019335 95 DFLLQCMEEASVDGALIVQPINHKFDHSLVTSVLKKYPSKF-VGCCLA----NPAED---VIGIKQLEQLILKDGFRAVR 166 (342)
Q Consensus 95 ~~ll~~md~~GI~~~v~~~~~~~~~~N~~~~~~~~~~p~r~-~g~~~i----~p~~~---~~~~~eler~~~~~g~~Gvk 166 (342)
++.++...++||+..-++.+..+-..-....+.+++..... ..++.- ||..+ .+...++-+.+.+.|+..|+
T Consensus 630 ~~~i~~a~~~Gid~~rifd~lnd~~~~~~~i~~vk~~g~~~~~~i~ytg~~~d~~~~~~~~~~~~~~a~~l~~~Ga~~i~ 709 (1146)
T PRK12999 630 RAFVREAAAAGIDVFRIFDSLNWVENMRVAIDAVRETGKIAEAAICYTGDILDPARAKYDLDYYVDLAKELEKAGAHILA 709 (1146)
T ss_pred HHHHHHHHHcCCCEEEEeccCChHHHHHHHHHHHHHcCCeEEEEEEEEecCCCCCCCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 34466777889988777754333212244566666663222 233433 55432 12333333333577888887
Q ss_pred ecCCCCCCCCcCCcHHHHHHHHHHhh-hCCeEEEEeccC
Q 019335 167 FNPYLWPSGQQMTNEVGKAMFSKAGE-LGVPVGFMCMKG 204 (342)
Q Consensus 167 ~~~~~~~~g~~l~~~~~~~~~~~a~e-~~lpv~iH~~~~ 204 (342)
+--.. |. +.=.....+++.+.+ .++||.+|+++.
T Consensus 710 ikDt~---G~-l~P~~~~~lv~~lk~~~~ipi~~H~Hnt 744 (1146)
T PRK12999 710 IKDMA---GL-LKPAAAYELVSALKEEVDLPIHLHTHDT 744 (1146)
T ss_pred ECCcc---CC-CCHHHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 76432 22 222355666666655 599999999854
No 303
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=37.86 E-value=3.1e+02 Score=24.86 Aligned_cols=168 Identities=14% Similarity=0.128 Sum_probs=96.8
Q ss_pred CCChHHHHHHhHHCCCceEEE-eCCCCCccchHHHHHHHHhCCCcEEEEE----EcCCCCcchHHHHHHHHHhcCCceEE
Q 019335 91 PGHVDFLLQCMEEASVDGALI-VQPINHKFDHSLVTSVLKKYPSKFVGCC----LANPAEDVIGIKQLEQLILKDGFRAV 165 (342)
Q Consensus 91 ~~~~~~ll~~md~~GI~~~v~-~~~~~~~~~N~~~~~~~~~~p~r~~g~~----~i~p~~~~~~~~eler~~~~~g~~Gv 165 (342)
..++.++.+.+.+.|....=+ ..+....-..+++....+... .++. .+|| .++.+. ...|.-.|
T Consensus 65 d~dp~~ia~~Ye~~GAa~iSVLTd~~~F~Gs~e~L~~v~~~v~---~PvL~KDFiiD~-------yQI~~A-r~~GADav 133 (254)
T COG0134 65 DFDPVEIAKAYEEGGAAAISVLTDPKYFQGSFEDLRAVRAAVD---LPVLRKDFIIDP-------YQIYEA-RAAGADAV 133 (254)
T ss_pred cCCHHHHHHHHHHhCCeEEEEecCccccCCCHHHHHHHHHhcC---CCeeeccCCCCH-------HHHHHH-HHcCcccH
Confidence 356778888888888766543 445444445667755544432 1221 2333 345544 35576666
Q ss_pred EecCCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEEeccCCCCCHHHHHHHHHhCCCCcEE-ecccCCCCCCCCchhhHhH
Q 019335 166 RFNPYLWPSGQQMTNEVGKAMFSKAGELGVPVGFMCMKGLNLHISEIEELCTEFPSTTVL-LDHLAFCKPPSNDEESLAF 244 (342)
Q Consensus 166 k~~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH~~~~~~~~~~~l~~l~~~~P~lk~v-l~H~G~~~p~~~~~~~~~~ 244 (342)
-+.. ..++++++..+++.|.++|+-+++-++ +..++...++. +.++| +.+=.--.-.+ .....
T Consensus 134 LLI~------~~L~~~~l~el~~~A~~LGm~~LVEVh-----~~eEl~rAl~~--ga~iIGINnRdL~tf~v---dl~~t 197 (254)
T COG0134 134 LLIV------AALDDEQLEELVDRAHELGMEVLVEVH-----NEEELERALKL--GAKIIGINNRDLTTLEV---DLETT 197 (254)
T ss_pred HHHH------HhcCHHHHHHHHHHHHHcCCeeEEEEC-----CHHHHHHHHhC--CCCEEEEeCCCcchhee---cHHHH
Confidence 5553 247788999999999999999988776 34677777773 33333 43332210000 00111
Q ss_pred HHHhcccCCCcEEEecCcccccccCCCCCCCchhHHHHHHHhcCCCcEEEccC
Q 019335 245 SNLLKLSRFPQVYVKFSALFRVSRMPFPYQDLSSPLSQVVSSFGANRVMWGSD 297 (342)
Q Consensus 245 ~~~~~l~~~~Nvy~~~S~~~~~~~~~~~~~~~~~~l~~~i~~~G~dRilfGSD 297 (342)
..+..+....-+++.-||+... .-++. +...|.+-+|-||-
T Consensus 198 ~~la~~~p~~~~~IsESGI~~~-----------~dv~~-l~~~ga~a~LVG~s 238 (254)
T COG0134 198 EKLAPLIPKDVILISESGISTP-----------EDVRR-LAKAGADAFLVGEA 238 (254)
T ss_pred HHHHhhCCCCcEEEecCCCCCH-----------HHHHH-HHHcCCCEEEecHH
Confidence 1222233334578888887532 23444 35668999999875
No 304
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=37.79 E-value=3.2e+02 Score=24.88 Aligned_cols=178 Identities=13% Similarity=0.166 Sum_probs=102.4
Q ss_pred hHHHHHHhHHCCCceEEE-eCCCC-----------------CccchHHHHHHHHh---CCC-cEEEEEEcCCCCcchHHH
Q 019335 94 VDFLLQCMEEASVDGALI-VQPIN-----------------HKFDHSLVTSVLKK---YPS-KFVGCCLANPAEDVIGIK 151 (342)
Q Consensus 94 ~~~ll~~md~~GI~~~v~-~~~~~-----------------~~~~N~~~~~~~~~---~p~-r~~g~~~i~p~~~~~~~~ 151 (342)
-.+++..|.+.|+|..=+ ++-+. .+..-+.+.+.+++ .++ .++-+...||-..-...+
T Consensus 31 ~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r~~~~~p~vlm~Y~N~i~~~G~e~ 110 (263)
T CHL00200 31 TKKALKILDKKGADIIELGIPYSDPLADGPIIQEASNRALKQGINLNKILSILSEVNGEIKAPIVIFTYYNPVLHYGINK 110 (263)
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCEEEEecccHHHHhCHHH
Confidence 345566788899987644 22221 11112334444443 222 355667788754211223
Q ss_pred HHHHHHhcCCceEEEecCCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEEeccCCCCCHHHHHHHHHhCCCCcEEecccCC
Q 019335 152 QLEQLILKDGFRAVRFNPYLWPSGQQMTNEVGKAMFSKAGELGVPVGFMCMKGLNLHISEIEELCTEFPSTTVLLDHLAF 231 (342)
Q Consensus 152 eler~~~~~g~~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH~~~~~~~~~~~l~~l~~~~P~lk~vl~H~G~ 231 (342)
-++++ .+.|+.||-++-.. -+...++.+.|.++|+...+-+... ...+.+..+++.-.+.-.++...|.
T Consensus 111 F~~~~-~~aGvdgviipDLP--------~ee~~~~~~~~~~~gi~~I~lv~Pt--T~~eri~~i~~~a~gFIY~vS~~Gv 179 (263)
T CHL00200 111 FIKKI-SQAGVKGLIIPDLP--------YEESDYLISVCNLYNIELILLIAPT--SSKSRIQKIARAAPGCIYLVSTTGV 179 (263)
T ss_pred HHHHH-HHcCCeEEEecCCC--------HHHHHHHHHHHHHcCCCEEEEECCC--CCHHHHHHHHHhCCCcEEEEcCCCC
Confidence 45555 68899999877431 2567899999999999988776632 2356788888888777677777775
Q ss_pred CCCCCCchhhHhHHH----HhcccCCCcEEEecCcccccccCCCCCCCchhHHHHHHHhcCCCcEEEccCC
Q 019335 232 CKPPSNDEESLAFSN----LLKLSRFPQVYVKFSALFRVSRMPFPYQDLSSPLSQVVSSFGANRVMWGSDF 298 (342)
Q Consensus 232 ~~p~~~~~~~~~~~~----~~~l~~~~Nvy~~~S~~~~~~~~~~~~~~~~~~l~~~i~~~G~dRilfGSD~ 298 (342)
.- .........++ +.+..+.| +.+++.-- + .+.++++ ...|+|=++.||=+
T Consensus 180 TG--~~~~~~~~~~~~i~~ir~~t~~P-i~vGFGI~-----------~-~e~~~~~-~~~GADGvVVGSal 234 (263)
T CHL00200 180 TG--LKTELDKKLKKLIETIKKMTNKP-IILGFGIS-----------T-SEQIKQI-KGWNINGIVIGSAC 234 (263)
T ss_pred CC--CCccccHHHHHHHHHHHHhcCCC-EEEECCcC-----------C-HHHHHHH-HhcCCCEEEECHHH
Confidence 31 11111112222 22223344 66655421 1 1345564 45589999999964
No 305
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=37.75 E-value=1.4e+02 Score=26.03 Aligned_cols=16 Identities=31% Similarity=0.463 Sum_probs=8.1
Q ss_pred HHHHHHHhhhCCeEEE
Q 019335 184 KAMFSKAGELGVPVGF 199 (342)
Q Consensus 184 ~~~~~~a~e~~lpv~i 199 (342)
.++++.|.+.|+||.+
T Consensus 70 ~~~l~~~~~~gIpvv~ 85 (257)
T PF13407_consen 70 APFLEKAKAAGIPVVT 85 (257)
T ss_dssp HHHHHHHHHTTSEEEE
T ss_pred HHHHHHHhhcCceEEE
Confidence 3455555555555543
No 306
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=37.63 E-value=1.3e+02 Score=26.65 Aligned_cols=76 Identities=17% Similarity=0.169 Sum_probs=52.1
Q ss_pred HHHHHHHHhcCCceEEEecCCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEEeccCC-CCCHHHHHHHHHhCCCCcEEecc
Q 019335 150 IKQLEQLILKDGFRAVRFNPYLWPSGQQMTNEVGKAMFSKAGELGVPVGFMCMKGL-NLHISEIEELCTEFPSTTVLLDH 228 (342)
Q Consensus 150 ~~eler~~~~~g~~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH~~~~~-~~~~~~l~~l~~~~P~lk~vl~H 228 (342)
++..-+++++.|...||+.|.. |.. .-+++..+-+.|.++|+++ -...|. -.+..++.+++..- +++.|+.|
T Consensus 137 vetAiaml~dmG~~SiKffPM~---Gl~-~leE~~avA~aca~~g~~l--EPTGGIdl~Nf~~I~~i~lda-Gv~kviPH 209 (236)
T TIGR03581 137 IETAIAMLKDMGGSSVKFFPMG---GLK-HLEEYAAVAKACAKHGFYL--EPTGGIDLDNFEEIVQIALDA-GVEKVIPH 209 (236)
T ss_pred HHHHHHHHHHcCCCeeeEeecC---Ccc-cHHHHHHHHHHHHHcCCcc--CCCCCccHHhHHHHHHHHHHc-CCCeeccc
Confidence 3455556688899999999863 332 3468999999999999985 322221 12345566666665 68889999
Q ss_pred cCCC
Q 019335 229 LAFC 232 (342)
Q Consensus 229 ~G~~ 232 (342)
..+.
T Consensus 210 IYss 213 (236)
T TIGR03581 210 VYSS 213 (236)
T ss_pred ccee
Confidence 8763
No 307
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=37.59 E-value=1.1e+02 Score=25.81 Aligned_cols=51 Identities=18% Similarity=0.283 Sum_probs=36.3
Q ss_pred cHHHHHHHHHHhhhCCeEEEEeccCCCCCHHH-HHHHHHhCCCCcEEecccCCC
Q 019335 180 NEVGKAMFSKAGELGVPVGFMCMKGLNLHISE-IEELCTEFPSTTVLLDHLAFC 232 (342)
Q Consensus 180 ~~~~~~~~~~a~e~~lpv~iH~~~~~~~~~~~-l~~l~~~~P~lk~vl~H~G~~ 232 (342)
...+..+++.+++.+..|.+-.+. +..++. ...+-++||+++++-.|.|..
T Consensus 32 ~dl~~~ll~~~~~~~~~v~llG~~--~~~~~~~~~~l~~~yp~l~i~g~~~g~~ 83 (171)
T cd06533 32 SDLMPALLELAAQKGLRVFLLGAK--PEVLEKAAERLRARYPGLKIVGYHHGYF 83 (171)
T ss_pred HHHHHHHHHHHHHcCCeEEEECCC--HHHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 356789999999999999876332 122222 345778899999888777764
No 308
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=37.54 E-value=3.6e+02 Score=25.47 Aligned_cols=97 Identities=16% Similarity=0.162 Sum_probs=55.1
Q ss_pred hHHHHHHhHHCCCceEEEeCC------CC-Cc----cchHHHHHHHHhCCC-cEEEEEEcCCCCcchHHHHHHHHHhcCC
Q 019335 94 VDFLLQCMEEASVDGALIVQP------IN-HK----FDHSLVTSVLKKYPS-KFVGCCLANPAEDVIGIKQLEQLILKDG 161 (342)
Q Consensus 94 ~~~ll~~md~~GI~~~v~~~~------~~-~~----~~N~~~~~~~~~~p~-r~~g~~~i~p~~~~~~~~eler~~~~~g 161 (342)
.-.+++.++++||+..=+--+ +. ++ .+.+++..+.+.-++ ++..+ +.|.... .+.+++. .+.|
T Consensus 27 ~~~i~~~L~~aGv~~IEvg~~~g~g~~s~~~g~~~~~~~e~i~~~~~~~~~~~~~~l--l~pg~~~--~~dl~~a-~~~g 101 (337)
T PRK08195 27 VRAIARALDAAGVPVIEVTHGDGLGGSSFNYGFGAHTDEEYIEAAAEVVKQAKIAAL--LLPGIGT--VDDLKMA-YDAG 101 (337)
T ss_pred HHHHHHHHHHcCCCEEEeecCCCCCCccccCCCCCCCHHHHHHHHHHhCCCCEEEEE--eccCccc--HHHHHHH-HHcC
Confidence 345677899999998765311 11 11 134555555555443 44433 3343322 3567777 4668
Q ss_pred ceEEEecCCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEEe
Q 019335 162 FRAVRFNPYLWPSGQQMTNEVGKAMFSKAGELGVPVGFMC 201 (342)
Q Consensus 162 ~~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH~ 201 (342)
+..|++..... . .....+..+.+.++|+-|.+-.
T Consensus 102 vd~iri~~~~~----e--~~~~~~~i~~ak~~G~~v~~~l 135 (337)
T PRK08195 102 VRVVRVATHCT----E--ADVSEQHIGLARELGMDTVGFL 135 (337)
T ss_pred CCEEEEEEecc----h--HHHHHHHHHHHHHCCCeEEEEE
Confidence 88888654320 1 1346777788888887765544
No 309
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=37.48 E-value=1.1e+02 Score=25.77 Aligned_cols=51 Identities=10% Similarity=0.187 Sum_probs=37.4
Q ss_pred cHHHHHHHHHHhhhCCeEEEEeccCCCCCHH-HHHHHHHhCCCCcEEecccCCC
Q 019335 180 NEVGKAMFSKAGELGVPVGFMCMKGLNLHIS-EIEELCTEFPSTTVLLDHLAFC 232 (342)
Q Consensus 180 ~~~~~~~~~~a~e~~lpv~iH~~~~~~~~~~-~l~~l~~~~P~lk~vl~H~G~~ 232 (342)
...+..+++.+++.+..|.+-.+. +.... ....+.++||+++++-.|.|..
T Consensus 34 ~dl~~~l~~~~~~~~~~ifllG~~--~~~~~~~~~~l~~~yP~l~ivg~~~g~f 85 (172)
T PF03808_consen 34 SDLFPDLLRRAEQRGKRIFLLGGS--EEVLEKAAANLRRRYPGLRIVGYHHGYF 85 (172)
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCC--HHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 356789999999999999876442 11222 3457888999999988787753
No 310
>PLN02389 biotin synthase
Probab=37.35 E-value=3.9e+02 Score=25.77 Aligned_cols=114 Identities=18% Similarity=0.141 Sum_probs=61.2
Q ss_pred CChHHHHHHhH---HCCCceEEEeCCC--CCc--cchHHHHHHHHhCCCc-EEEEEEcCCCCcchHHHHHHHHHhcCCce
Q 019335 92 GHVDFLLQCME---EASVDGALIVQPI--NHK--FDHSLVTSVLKKYPSK-FVGCCLANPAEDVIGIKQLEQLILKDGFR 163 (342)
Q Consensus 92 ~~~~~ll~~md---~~GI~~~v~~~~~--~~~--~~N~~~~~~~~~~p~r-~~g~~~i~p~~~~~~~~eler~~~~~g~~ 163 (342)
-+.|++++..+ +.|+...+++... ..+ ...+++.++++.--.. +..++...+.. .++++++ ++.|+.
T Consensus 116 Ls~EeIl~~a~~~~~~G~~~~~ivts~rg~~~e~~~~e~i~eiir~ik~~~l~i~~s~G~l~----~E~l~~L-keAGld 190 (379)
T PLN02389 116 MSKDDVLEAAKRAKEAGSTRFCMGAAWRDTVGRKTNFNQILEYVKEIRGMGMEVCCTLGMLE----KEQAAQL-KEAGLT 190 (379)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEecccCCCCChhHHHHHHHHHHHHhcCCcEEEECCCCCC----HHHHHHH-HHcCCC
Confidence 46777777544 5799887664211 111 2245666666643221 22222222222 2455555 567887
Q ss_pred EEEecCCC----CCC-CCcCCcHHHHHHHHHHhhhCCeEEEEeccCCCCCHH
Q 019335 164 AVRFNPYL----WPS-GQQMTNEVGKAMFSKAGELGVPVGFMCMKGLNLHIS 210 (342)
Q Consensus 164 Gvk~~~~~----~~~-g~~l~~~~~~~~~~~a~e~~lpv~iH~~~~~~~~~~ 210 (342)
.+-..... ++. ...-+-+......+.+.+.|+.+..|.--|......
T Consensus 191 ~~~~~LeTs~~~y~~i~~~~s~e~rl~ti~~a~~~Gi~v~sg~IiGlgEt~e 242 (379)
T PLN02389 191 AYNHNLDTSREYYPNVITTRSYDDRLETLEAVREAGISVCSGGIIGLGEAEE 242 (379)
T ss_pred EEEeeecCChHHhCCcCCCCCHHHHHHHHHHHHHcCCeEeEEEEECCCCCHH
Confidence 76544321 110 001133456688899999999998887555444443
No 311
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=37.29 E-value=3.1e+02 Score=24.58 Aligned_cols=95 Identities=13% Similarity=0.052 Sum_probs=56.8
Q ss_pred CChHHHHHHhHHCCCceEEEeCCC----CCccchHHHHHHHHhCCCcEEEEEEcCCCCcchHHHHHHHHHhcCCceEEEe
Q 019335 92 GHVDFLLQCMEEASVDGALIVQPI----NHKFDHSLVTSVLKKYPSKFVGCCLANPAEDVIGIKQLEQLILKDGFRAVRF 167 (342)
Q Consensus 92 ~~~~~ll~~md~~GI~~~v~~~~~----~~~~~N~~~~~~~~~~p~r~~g~~~i~p~~~~~~~~eler~~~~~g~~Gvk~ 167 (342)
.+..++++.+++.|++..++.... ..+.+.+.+.++.+..+-.+++...+. . .+.++++.+..|+.||-.
T Consensus 155 ~~~~~~~~~l~~~G~~~iivt~i~~~g~~~g~~~~~~~~i~~~~~ipvia~GGi~--s----~~di~~~~~~g~~dgv~~ 228 (254)
T TIGR00735 155 LDAVEWAKEVEKLGAGEILLTSMDKDGTKSGYDLELTKAVSEAVKIPVIASGGAG--K----PEHFYEAFTKGKADAALA 228 (254)
T ss_pred CCHHHHHHHHHHcCCCEEEEeCcCcccCCCCCCHHHHHHHHHhCCCCEEEeCCCC--C----HHHHHHHHHcCCcceeeE
Confidence 456788899999999988874321 123445566666555443444444332 1 234556555555888865
Q ss_pred cCCCCCCCCcCCcHHHHHHHHHHhhhCCeE
Q 019335 168 NPYLWPSGQQMTNEVGKAMFSKAGELGVPV 197 (342)
Q Consensus 168 ~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv 197 (342)
....+ ...+ .+..+.+.|++.|++|
T Consensus 229 g~a~~--~~~~---~~~~~~~~~~~~gi~~ 253 (254)
T TIGR00735 229 ASVFH--YREI---TIGEVKEYLAERGIPV 253 (254)
T ss_pred hHHHh--CCCC---CHHHHHHHHHHCCCcc
Confidence 54332 1122 2567788888888875
No 312
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=37.28 E-value=2.3e+02 Score=27.94 Aligned_cols=140 Identities=12% Similarity=0.160 Sum_probs=75.9
Q ss_pred cchHHHHHHHHHhcCCceEEEecCCCC-CCCCcCC--cHHHHHHHHHHhhhCCeEEEEeccCCCC-CHHHHHHHHHhCCC
Q 019335 146 DVIGIKQLEQLILKDGFRAVRFNPYLW-PSGQQMT--NEVGKAMFSKAGELGVPVGFMCMKGLNL-HISEIEELCTEFPS 221 (342)
Q Consensus 146 ~~~~~~eler~~~~~g~~Gvk~~~~~~-~~g~~l~--~~~~~~~~~~a~e~~lpv~iH~~~~~~~-~~~~l~~l~~~~P~ 221 (342)
+++.++|+++++ +.|++=|.+....- ..|..+. ...+-.+++.+.+-.=-.-+-.+...|. ..+++.++.++-|
T Consensus 175 ~e~Il~ev~~Lv-~~G~kEI~L~gqdv~aYG~D~~~~~~~l~~Ll~~l~~I~G~~riR~~~~~P~~~~d~lI~~~~~~~- 252 (437)
T COG0621 175 PEDILKEVKRLV-AQGVKEIVLTGQDVNAYGKDLGGGKPNLADLLRELSKIPGIERIRFGSSHPLEFTDDLIEAIAETP- 252 (437)
T ss_pred HHHHHHHHHHHH-HCCCeEEEEEEEehhhccccCCCCccCHHHHHHHHhcCCCceEEEEecCCchhcCHHHHHHHhcCC-
Confidence 456788999996 77999888764321 1244454 3678888888887321122222211121 1234555555555
Q ss_pred CcEEecccCCCCCCCCch---------hhHhHHHHh-ccc-CCCcEEEecCcccccccCCCCCCCchhHHHHHHHhcCCC
Q 019335 222 TTVLLDHLAFCKPPSNDE---------ESLAFSNLL-KLS-RFPQVYVKFSALFRVSRMPFPYQDLSSPLSQVVSSFGAN 290 (342)
Q Consensus 222 lk~vl~H~G~~~p~~~~~---------~~~~~~~~~-~l~-~~~Nvy~~~S~~~~~~~~~~~~~~~~~~l~~~i~~~G~d 290 (342)
-++.|+-.+.-...+. ....+.++. ++. ..|++.+.+.-+..+.+.. .++. ...-.+++.++.|
T Consensus 253 --kv~~~lHlPvQsGsd~ILk~M~R~yt~e~~~~~i~k~R~~~Pd~~i~tDiIVGFPgET--eedF-e~tl~lv~e~~fd 327 (437)
T COG0621 253 --KVCPHLHLPVQSGSDRILKRMKRGYTVEEYLEIIEKLRAARPDIAISTDIIVGFPGET--EEDF-EETLDLVEEVRFD 327 (437)
T ss_pred --cccccccCccccCCHHHHHHhCCCcCHHHHHHHHHHHHHhCCCceEeccEEEECCCCC--HHHH-HHHHHHHHHhCCC
Confidence 3677776643211111 112333433 353 5899999888665543211 1222 3345667788899
Q ss_pred cE
Q 019335 291 RV 292 (342)
Q Consensus 291 Ri 292 (342)
++
T Consensus 328 ~~ 329 (437)
T COG0621 328 RL 329 (437)
T ss_pred EE
Confidence 88
No 313
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=36.65 E-value=3.2e+02 Score=24.58 Aligned_cols=83 Identities=13% Similarity=0.209 Sum_probs=47.2
Q ss_pred chHHHHHHHHHhcCCceEEEecCCCC-CCCCcCC--c--HHHHHHHHHHhhh-CCeEEEEeccCC---------------
Q 019335 147 VIGIKQLEQLILKDGFRAVRFNPYLW-PSGQQMT--N--EVGKAMFSKAGEL-GVPVGFMCMKGL--------------- 205 (342)
Q Consensus 147 ~~~~~eler~~~~~g~~Gvk~~~~~~-~~g~~l~--~--~~~~~~~~~a~e~-~lpv~iH~~~~~--------------- 205 (342)
+.++++.++++ +.|..-|-+..... |.....+ + +++.++.+.+.+. ++||.+-+....
T Consensus 24 ~~~~~~a~~~~-~~GAdiIDvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~~~~~piSIDT~~~~v~~aaL~~g~~iINd 102 (258)
T cd00423 24 DKALEHARRMV-EEGADIIDIGGESTRPGAEPVSVEEELERVIPVLRALAGEPDVPISVDTFNAEVAEAALKAGADIIND 102 (258)
T ss_pred HHHHHHHHHHH-HCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhcCCCeEEEeCCcHHHHHHHHHhCCCEEEe
Confidence 34555555553 55666666654321 1111111 1 3566777777665 777777664210
Q ss_pred --CCCH-HHHHHHHHhCCCCcEEecccCC
Q 019335 206 --NLHI-SEIEELCTEFPSTTVLLDHLAF 231 (342)
Q Consensus 206 --~~~~-~~l~~l~~~~P~lk~vl~H~G~ 231 (342)
.... +.+.+++++| +..+|+-|...
T Consensus 103 is~~~~~~~~~~l~~~~-~~~vV~m~~~~ 130 (258)
T cd00423 103 VSGGRGDPEMAPLAAEY-GAPVVLMHMDG 130 (258)
T ss_pred CCCCCCChHHHHHHHHc-CCCEEEECcCC
Confidence 1111 5678889998 68899999754
No 314
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=36.62 E-value=94 Score=27.39 Aligned_cols=102 Identities=14% Similarity=0.144 Sum_probs=57.7
Q ss_pred CCChHHHHHHhHHCCCceEEEeCCCCCccchHHHHHHH-HhC---CCcEEEE---EEcC-CCC-cchHHHHHHHHHhcCC
Q 019335 91 PGHVDFLLQCMEEASVDGALIVQPINHKFDHSLVTSVL-KKY---PSKFVGC---CLAN-PAE-DVIGIKQLEQLILKDG 161 (342)
Q Consensus 91 ~~~~~~ll~~md~~GI~~~v~~~~~~~~~~N~~~~~~~-~~~---p~r~~g~---~~i~-p~~-~~~~~~eler~~~~~g 161 (342)
..+++++++.+.+.|++...+. +. .++.+ +.+ ...+... ..+. |.. ......++++.+ +.|
T Consensus 20 ~~d~~~~~~~~~~~g~~av~v~-~~--------~~~~~~~~~~~~~~~i~~~~~~~~i~~p~~~~~~~~~~v~~a~-~~G 89 (235)
T cd00958 20 LEDPEETVKLAAEGGADAVALT-KG--------IARAYGREYAGDIPLIVKLNGSTSLSPKDDNDKVLVASVEDAV-RLG 89 (235)
T ss_pred ccCHHHHHHHHHhcCCCEEEeC-hH--------HHHhcccccCCCCcEEEEECCCCCCCCCCCCchhhhcCHHHHH-HCC
Confidence 3578899999999998877654 21 12221 111 1222221 2222 122 233445677774 779
Q ss_pred ceEEEecCCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEEec
Q 019335 162 FRAVRFNPYLWPSGQQMTNEVGKAMFSKAGELGVPVGFMCM 202 (342)
Q Consensus 162 ~~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH~~ 202 (342)
..++.+............-.....+.+.|.++|+++.+...
T Consensus 90 a~~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~g~~~iie~~ 130 (235)
T cd00958 90 ADAVGVTVYVGSEEEREMLEELARVAAEAHKYGLPLIAWMY 130 (235)
T ss_pred CCEEEEEEecCCchHHHHHHHHHHHHHHHHHcCCCEEEEEe
Confidence 98886654321101111123667788888999999988653
No 315
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=36.51 E-value=3.5e+02 Score=25.01 Aligned_cols=82 Identities=15% Similarity=0.084 Sum_probs=47.9
Q ss_pred HHHHHHHhCCCcEEEE-EEcCCCC-cchHHHHHHHHHhcCCc-eEEEecCCCCC------CCCcCCcHHHHHHHHHHhhh
Q 019335 123 LVTSVLKKYPSKFVGC-CLANPAE-DVIGIKQLEQLILKDGF-RAVRFNPYLWP------SGQQMTNEVGKAMFSKAGEL 193 (342)
Q Consensus 123 ~~~~~~~~~p~r~~g~-~~i~p~~-~~~~~~eler~~~~~g~-~Gvk~~~~~~~------~g~~l~~~~~~~~~~~a~e~ 193 (342)
.+++.+.++|+ .+++ +...|.. +++.+++|+++ .+.|+ ..|-+...... -+...+-+.+...++.+.+.
T Consensus 98 ~l~~~i~~~~~-~~~isi~trpd~l~~e~l~~L~~l-~~~G~~~~i~lGlQS~~d~~L~~i~Rg~t~~~~~~ai~~l~~~ 175 (302)
T TIGR01212 98 EMYEQALSYDD-VVGLSVGTRPDCVPDEVLDLLAEY-VERGYEVWVELGLQTAHDKTLKKINRGHDFACYVDAVKRARKR 175 (302)
T ss_pred HHHHHHhCCCC-EEEEEEEecCCcCCHHHHHHHHHh-hhCCceEEEEEccCcCCHHHHHHHcCcChHHHHHHHHHHHHHc
Confidence 44555556664 4444 3456765 34456677766 45677 44444322100 01122345678888999999
Q ss_pred CCeEEEEeccCCC
Q 019335 194 GVPVGFMCMKGLN 206 (342)
Q Consensus 194 ~lpv~iH~~~~~~ 206 (342)
|+.|.+|.-.|+|
T Consensus 176 gi~v~~~lI~GlP 188 (302)
T TIGR01212 176 GIKVCSHVILGLP 188 (302)
T ss_pred CCEEEEeEEECCC
Confidence 9999999766654
No 316
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=36.45 E-value=70 Score=29.02 Aligned_cols=48 Identities=15% Similarity=0.091 Sum_probs=38.0
Q ss_pred cchHHHHHHHHHhcCCceEEEecCCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEEecc
Q 019335 146 DVIGIKQLEQLILKDGFRAVRFNPYLWPSGQQMTNEVGKAMFSKAGELGVPVGFMCMK 203 (342)
Q Consensus 146 ~~~~~~eler~~~~~g~~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH~~~ 203 (342)
++++++...|.+++.|+.||++... ....+..+.+.+.++||.-|.+-
T Consensus 89 ~~~av~~a~r~~~~aGa~aVkiEd~----------~~~~~~I~al~~agipV~gHiGL 136 (254)
T cd06557 89 PEQALRNAARLMKEAGADAVKLEGG----------AEVAETIRALVDAGIPVMGHIGL 136 (254)
T ss_pred HHHHHHHHHHHHHHhCCeEEEEcCc----------HHHHHHHHHHHHcCCCeeccccc
Confidence 4456667777777799999998742 36778899999999999999873
No 317
>PTZ00376 aspartate aminotransferase; Provisional
Probab=36.41 E-value=3.4e+02 Score=25.94 Aligned_cols=28 Identities=21% Similarity=0.115 Sum_probs=19.9
Q ss_pred CCCCcCCcHHHHHHHHHHhhhCCeEEEE
Q 019335 173 PSGQQMTNEVGKAMFSKAGELGVPVGFM 200 (342)
Q Consensus 173 ~~g~~l~~~~~~~~~~~a~e~~lpv~iH 200 (342)
|.|..++.++++.+.+.|.++|+.|...
T Consensus 188 PTG~~~s~~~~~~l~~~a~~~~~~ii~D 215 (404)
T PTZ00376 188 PTGVDPTEEQWKEIADVMKRKNLIPFFD 215 (404)
T ss_pred CCCCCCCHHHHHHHHHHHHhCCcEEEEe
Confidence 5566777777777777787777766543
No 318
>PF13594 Amidohydro_5: Amidohydrolase; PDB: 4F0R_A 4F0S_A 1NFG_C 2FVM_A 2FVK_A 2FTY_D 1YBQ_B 1POJ_B 1ONW_A 2AQO_B ....
Probab=36.21 E-value=19 Score=25.00 Aligned_cols=10 Identities=40% Similarity=0.524 Sum_probs=7.3
Q ss_pred Ceeeeeeecc
Q 019335 61 KIIDSHLHVW 70 (342)
Q Consensus 61 ~iID~H~Hl~ 70 (342)
-.||+|+|+.
T Consensus 35 G~ID~H~H~~ 44 (68)
T PF13594_consen 35 GFIDMHTHLG 44 (68)
T ss_dssp -EEEEEE-TT
T ss_pred CeEeeeeccc
Confidence 5899999986
No 319
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=36.17 E-value=3.3e+02 Score=24.66 Aligned_cols=130 Identities=18% Similarity=0.144 Sum_probs=74.1
Q ss_pred hHHHHHHhHHCCCceEEEeCCCCCc---------cchHHHHHHHHhC--CCcEEEEEEcCCCCcchHHHHHHHHHhcCCc
Q 019335 94 VDFLLQCMEEASVDGALIVQPINHK---------FDHSLVTSVLKKY--PSKFVGCCLANPAEDVIGIKQLEQLILKDGF 162 (342)
Q Consensus 94 ~~~ll~~md~~GI~~~v~~~~~~~~---------~~N~~~~~~~~~~--p~r~~g~~~i~p~~~~~~~~eler~~~~~g~ 162 (342)
..++.+.++++||+..=+--+.... .+.+++.++.+.. +-++.++ +.+... ..+.++.. .+.|+
T Consensus 22 ~~~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~~~~~~--~~~~l~~a-~~~gv 96 (266)
T cd07944 22 VKAIYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSKGNTKIAVM--VDYGND--DIDLLEPA-SGSVV 96 (266)
T ss_pred HHHHHHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhccCCEEEEE--ECCCCC--CHHHHHHH-hcCCc
Confidence 3456678999999987553221111 1245666655543 2355544 344321 12456555 57788
Q ss_pred eEEEecCCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEEeccCCCCCHHHHHHHH---HhCC-CCcEEecccCCCCC
Q 019335 163 RAVRFNPYLWPSGQQMTNEVGKAMFSKAGELGVPVGFMCMKGLNLHISEIEELC---TEFP-STTVLLDHLAFCKP 234 (342)
Q Consensus 163 ~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH~~~~~~~~~~~l~~l~---~~~P-~lk~vl~H~G~~~p 234 (342)
..|++.... . .-+...+..+.+.++|+.|.+...+.....++.+.+++ .+++ +.--+.+-.|...|
T Consensus 97 ~~iri~~~~----~--~~~~~~~~i~~ak~~G~~v~~~~~~a~~~~~~~~~~~~~~~~~~g~~~i~l~DT~G~~~P 166 (266)
T cd07944 97 DMIRVAFHK----H--EFDEALPLIKAIKEKGYEVFFNLMAISGYSDEELLELLELVNEIKPDVFYIVDSFGSMYP 166 (266)
T ss_pred CEEEEeccc----c--cHHHHHHHHHHHHHCCCeEEEEEEeecCCCHHHHHHHHHHHHhCCCCEEEEecCCCCCCH
Confidence 888876432 1 23577889999999999998886544333444444443 3332 33234566666544
No 320
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=36.00 E-value=3.3e+02 Score=25.15 Aligned_cols=24 Identities=21% Similarity=0.171 Sum_probs=15.9
Q ss_pred cHHHHHHHHHHhhhCCeEEEEecc
Q 019335 180 NEVGKAMFSKAGELGVPVGFMCMK 203 (342)
Q Consensus 180 ~~~~~~~~~~a~e~~lpv~iH~~~ 203 (342)
.+....+++.|++.+.||.+....
T Consensus 28 ~e~~~avi~AAee~~sPvIlq~~~ 51 (284)
T PRK12857 28 MEIVQAIVAAAEAEKSPVIIQASQ 51 (284)
T ss_pred HHHHHHHHHHHHHhCCCEEEEech
Confidence 356667777777777777776653
No 321
>PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases.; PDB: 3D6K_C 3EZ1_A 3PPL_B.
Probab=35.93 E-value=3.2e+02 Score=26.61 Aligned_cols=118 Identities=14% Similarity=0.088 Sum_probs=56.5
Q ss_pred HHHHHHHHHHhhhCCeEEEEeccCCCCCHHHHHHHHHhCCCCcEEecccCCCCCCCCchhhHhHHHHhcc---cCCCcEE
Q 019335 181 EVGKAMFSKAGELGVPVGFMCMKGLNLHISEIEELCTEFPSTTVLLDHLAFCKPPSNDEESLAFSNLLKL---SRFPQVY 257 (342)
Q Consensus 181 ~~~~~~~~~a~e~~lpv~iH~~~~~~~~~~~l~~l~~~~P~lk~vl~H~G~~~p~~~~~~~~~~~~~~~l---~~~~Nvy 257 (342)
|-+++-|..|+.+|+-+.-=.......++..++++..+-|.+|-+++=--...|.-.....+.-+++..| +..=.+|
T Consensus 132 PGYDRHFai~E~~Giemi~VpM~~dGPDmD~Ve~LV~~D~svKGiWcVP~ySNPtG~tySde~vrrlA~m~~AA~DFRI~ 211 (425)
T PF12897_consen 132 PGYDRHFAITEHFGIEMIPVPMTEDGPDMDMVEELVAEDPSVKGIWCVPKYSNPTGITYSDEVVRRLAAMKTAAPDFRIF 211 (425)
T ss_dssp S--HHHHHHHHHCT-EEEEEEEETTEE-HHHHHHHTHTSTTEEEEEE-SSS-TTT-----HHHHHHHHHS--SSTT-EEE
T ss_pred CCchHHHHHHHhhCcEEEecCCCCCCCCHHHHHHHHhcCCccceEEeCCCccCCCCccCCHHHHHHHhcCCcCCcCeEEE
Confidence 4568999999999987643333222357889999999999999887644433331000011112223323 2111366
Q ss_pred EecCcccccccCCCCCCCchhHHHHHHHhcCCCcE-EEccCC
Q 019335 258 VKFSALFRVSRMPFPYQDLSSPLSQVVSSFGANRV-MWGSDF 298 (342)
Q Consensus 258 ~~~S~~~~~~~~~~~~~~~~~~l~~~i~~~G~dRi-lfGSD~ 298 (342)
-|-.-.........+......++..+.+.-.+||+ +|+|=.
T Consensus 212 WDNAY~vHhL~~~~~~~~~~nil~~~~~AGnpdrv~~F~STS 253 (425)
T PF12897_consen 212 WDNAYAVHHLYDEEPRDALLNILDACAKAGNPDRVYVFASTS 253 (425)
T ss_dssp EE-TTTT-BSSSSSS------HHHHHHHTT-TTSEEEEEEST
T ss_pred eecCceEeeccccccchhhhHHHHHHHHcCCCCeEEEEeccc
Confidence 66554333211111111112455555555448888 788864
No 322
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=35.79 E-value=2.4e+02 Score=26.97 Aligned_cols=89 Identities=15% Similarity=0.184 Sum_probs=52.3
Q ss_pred HHHhHHCCCceEEEeCCCCCccchHHHHHHHHhCCCcEEEEEEcCCCCcchHHHHHHHHHhcCCceEEEecCCCCCCCCc
Q 019335 98 LQCMEEASVDGALIVQPINHKFDHSLVTSVLKKYPSKFVGCCLANPAEDVIGIKQLEQLILKDGFRAVRFNPYLWPSGQQ 177 (342)
Q Consensus 98 l~~md~~GI~~~v~~~~~~~~~~N~~~~~~~~~~p~r~~g~~~i~p~~~~~~~~eler~~~~~g~~Gvk~~~~~~~~g~~ 177 (342)
+..+.++|-+-.=+.-+ ...+-+.+.++.++-| +--++-+|-+. .-+++. .+.|+.++|++|.- .
T Consensus 48 i~~L~~aGceiVRvav~--~~~~a~al~~I~~~~~--iPlvADIHFd~-~lAl~a-----~~~G~~~iRINPGN-----i 112 (360)
T PRK00366 48 IKRLARAGCEIVRVAVP--DMEAAAALPEIKKQLP--VPLVADIHFDY-RLALAA-----AEAGADALRINPGN-----I 112 (360)
T ss_pred HHHHHHcCCCEEEEccC--CHHHHHhHHHHHHcCC--CCEEEecCCCH-HHHHHH-----HHhCCCEEEECCCC-----C
Confidence 44667778775543222 1222334455555554 22234444432 112222 26689999999852 2
Q ss_pred CC-cHHHHHHHHHHhhhCCeEEEEe
Q 019335 178 MT-NEVGKAMFSKAGELGVPVGFMC 201 (342)
Q Consensus 178 l~-~~~~~~~~~~a~e~~lpv~iH~ 201 (342)
-. .+.+.++.++|.++|+|+=|=+
T Consensus 113 g~~~~~v~~vv~~ak~~~ipIRIGv 137 (360)
T PRK00366 113 GKRDERVREVVEAAKDYGIPIRIGV 137 (360)
T ss_pred CchHHHHHHHHHHHHHCCCCEEEec
Confidence 23 5789999999999999996654
No 323
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=35.73 E-value=2.7e+02 Score=25.66 Aligned_cols=25 Identities=24% Similarity=0.194 Sum_probs=18.5
Q ss_pred CcHHHHHHHHHHhhhCCeEEEEecc
Q 019335 179 TNEVGKAMFSKAGELGVPVGFMCMK 203 (342)
Q Consensus 179 ~~~~~~~~~~~a~e~~lpv~iH~~~ 203 (342)
+.+..+.+++.|++.+.||.+.+..
T Consensus 25 n~e~~~avi~AAee~~sPvIlq~s~ 49 (282)
T TIGR01858 25 NLETIQAVVETAAEMRSPVILAGTP 49 (282)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEeCc
Confidence 3466778888888888888887754
No 324
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=35.24 E-value=3.5e+02 Score=24.61 Aligned_cols=178 Identities=20% Similarity=0.247 Sum_probs=98.1
Q ss_pred HHHHHHhHHCCCceEEE-eCCCC-----------------CccchH----HHHHHHHhCCC-cEEEEEEcCCCCcchHHH
Q 019335 95 DFLLQCMEEASVDGALI-VQPIN-----------------HKFDHS----LVTSVLKKYPS-KFVGCCLANPAEDVIGIK 151 (342)
Q Consensus 95 ~~ll~~md~~GI~~~v~-~~~~~-----------------~~~~N~----~~~~~~~~~p~-r~~g~~~i~p~~~~~~~~ 151 (342)
-++++.|.+.|++..=+ ++.+. .+...+ .+.++.+++++ .++-+...||-..- .++
T Consensus 27 ~~~~~~l~~~GaD~iEiGiPfSDP~ADGpvIq~A~~rAL~~G~~~~~~~~~~~~ir~~~~~~pivlm~Y~N~i~~~-G~e 105 (259)
T PF00290_consen 27 LEILKALEEAGADIIEIGIPFSDPVADGPVIQKASQRALKNGFTLEKIFELVKEIRKKEPDIPIVLMTYYNPIFQY-GIE 105 (259)
T ss_dssp HHHHHHHHHTTBSSEEEE--SSSCTTSSHHHHHHHHHHHHTT--HHHHHHHHHHHHHHCTSSEEEEEE-HHHHHHH--HH
T ss_pred HHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHhccCCCCCEEEEeeccHHhcc-chH
Confidence 45667788899987644 33221 112222 23333335555 56677888874321 234
Q ss_pred HHHHHHhcCCceEEEecCCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEEeccCCCCCHHHHHHHHHhCCCCcEEecccCC
Q 019335 152 QLEQLILKDGFRAVRFNPYLWPSGQQMTNEVGKAMFSKAGELGVPVGFMCMKGLNLHISEIEELCTEFPSTTVLLDHLAF 231 (342)
Q Consensus 152 eler~~~~~g~~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH~~~~~~~~~~~l~~l~~~~P~lk~vl~H~G~ 231 (342)
++-+.+++.|+.|+-+.-. .-+..+++.+.|.++|+.+..-+... .....+..+++.-++.-.++...|.
T Consensus 106 ~F~~~~~~aGvdGlIipDL--------P~ee~~~~~~~~~~~gl~~I~lv~p~--t~~~Ri~~i~~~a~gFiY~vs~~Gv 175 (259)
T PF00290_consen 106 RFFKEAKEAGVDGLIIPDL--------PPEESEELREAAKKHGLDLIPLVAPT--TPEERIKKIAKQASGFIYLVSRMGV 175 (259)
T ss_dssp HHHHHHHHHTEEEEEETTS--------BGGGHHHHHHHHHHTT-EEEEEEETT--S-HHHHHHHHHH-SSEEEEESSSSS
T ss_pred HHHHHHHHcCCCEEEEcCC--------ChHHHHHHHHHHHHcCCeEEEEECCC--CCHHHHHHHHHhCCcEEEeeccCCC
Confidence 4444446779999976532 12456788999999999987776532 3456788888888887677788885
Q ss_pred CCCCCC-chhhHhH-HHHhcccCCCcEEEecCcccccccCCCCCCCchhHHHHHHHhcCCCcEEEccCC
Q 019335 232 CKPPSN-DEESLAF-SNLLKLSRFPQVYVKFSALFRVSRMPFPYQDLSSPLSQVVSSFGANRVMWGSDF 298 (342)
Q Consensus 232 ~~p~~~-~~~~~~~-~~~~~l~~~~Nvy~~~S~~~~~~~~~~~~~~~~~~l~~~i~~~G~dRilfGSD~ 298 (342)
--.... ......+ +.+.+..+.| +++.+.-- + .+.++.+. -|.|=++.||-+
T Consensus 176 TG~~~~~~~~l~~~i~~ik~~~~~P-v~vGFGI~-----------~-~e~~~~~~--~~aDGvIVGSa~ 229 (259)
T PF00290_consen 176 TGSRTELPDELKEFIKRIKKHTDLP-VAVGFGIS-----------T-PEQAKKLA--AGADGVIVGSAF 229 (259)
T ss_dssp SSTTSSCHHHHHHHHHHHHHTTSS--EEEESSS------------S-HHHHHHHH--TTSSEEEESHHH
T ss_pred CCCcccchHHHHHHHHHHHhhcCcc-eEEecCCC-----------C-HHHHHHHH--ccCCEEEECHHH
Confidence 211000 0111111 2233344455 77776532 1 13466665 469999999863
No 325
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=35.15 E-value=4e+02 Score=25.35 Aligned_cols=104 Identities=15% Similarity=0.186 Sum_probs=53.9
Q ss_pred HHHHHHhHHCCCceEEEeCC-CC------Cccch-------HHHHHHHHhCCCcEEEEEEcCC--CCcchHHHHHHHHHh
Q 019335 95 DFLLQCMEEASVDGALIVQP-IN------HKFDH-------SLVTSVLKKYPSKFVGCCLANP--AEDVIGIKQLEQLIL 158 (342)
Q Consensus 95 ~~ll~~md~~GI~~~v~~~~-~~------~~~~N-------~~~~~~~~~~p~r~~g~~~i~p--~~~~~~~~eler~~~ 158 (342)
.+-++.+.++|++..-++-+ +. .+... ..+++++++.. ..+-+..-+- .+++ .+.++-+.+.
T Consensus 75 ~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g-~~v~~~~ed~~r~~~~-~l~~~~~~~~ 152 (365)
T TIGR02660 75 DADIEAAARCGVDAVHISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRG-LFVSVGGEDASRADPD-FLVELAEVAA 152 (365)
T ss_pred HHHHHHHHcCCcCEEEEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCC-CEEEEeecCCCCCCHH-HHHHHHHHHH
Confidence 34456677789987655433 21 11111 13445555553 2233332222 2233 4444444446
Q ss_pred cCCceEEEecCCCCCCCCcCCcHHHHHHHHHHhh-hCCeEEEEeccC
Q 019335 159 KDGFRAVRFNPYLWPSGQQMTNEVGKAMFSKAGE-LGVPVGFMCMKG 204 (342)
Q Consensus 159 ~~g~~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e-~~lpv~iH~~~~ 204 (342)
+.|...|.+--.. |.. .=..+..+++.+.+ .++++.+|+++.
T Consensus 153 ~~Ga~~i~l~DT~---G~~-~P~~v~~lv~~l~~~~~v~l~~H~HNd 195 (365)
T TIGR02660 153 EAGADRFRFADTV---GIL-DPFSTYELVRALRQAVDLPLEMHAHND 195 (365)
T ss_pred HcCcCEEEEcccC---CCC-CHHHHHHHHHHHHHhcCCeEEEEecCC
Confidence 7788877765332 322 22355566666544 589999999864
No 326
>PF03659 Glyco_hydro_71: Glycosyl hydrolase family 71 ; InterPro: IPR005197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,3-glucanases belonging to glycoside hydrolase family 71 (GH71 from CAZY).
Probab=35.11 E-value=2.4e+02 Score=27.31 Aligned_cols=72 Identities=10% Similarity=-0.002 Sum_probs=51.2
Q ss_pred CcchHHHHHHHHHhcCCceEEEecCCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEEecc--CCCCCHHHHHHHHHhCC
Q 019335 145 EDVIGIKQLEQLILKDGFRAVRFNPYLWPSGQQMTNEVGKAMFSKAGELGVPVGFMCMK--GLNLHISEIEELCTEFP 220 (342)
Q Consensus 145 ~~~~~~~eler~~~~~g~~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH~~~--~~~~~~~~l~~l~~~~P 220 (342)
..++..++++.. ++.|+-|+-++... .......++...|++|++.|..+.+...- ..++...++..++++|-
T Consensus 15 t~~dw~~di~~A-~~~GIDgFaLNig~---~d~~~~~~l~~a~~AA~~~gFKlf~SfD~~~~~~~~~~~~~~~i~~y~ 88 (386)
T PF03659_consen 15 TQEDWEADIRLA-QAAGIDGFALNIGS---SDSWQPDQLADAYQAAEAVGFKLFFSFDMNSLGPWSQDELIALIKKYA 88 (386)
T ss_pred CHHHHHHHHHHH-HHcCCCEEEEeccc---CCcccHHHHHHHHHHHHhcCCEEEEEecccCCCCCCHHHHHHHHHHHc
Confidence 344577888887 68999999988652 23345678999999999999777776431 12345577777777664
No 327
>PLN02231 alanine transaminase
Probab=34.82 E-value=3.6e+02 Score=27.30 Aligned_cols=51 Identities=20% Similarity=0.215 Sum_probs=36.1
Q ss_pred HHHHHHHHhc---C--CceEEEec-CCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEEe
Q 019335 150 IKQLEQLILK---D--GFRAVRFN-PYLWPSGQQMTNEVGKAMFSKAGELGVPVGFMC 201 (342)
Q Consensus 150 ~~eler~~~~---~--g~~Gvk~~-~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH~ 201 (342)
+++|++.+++ . ..+++-+. |. .|.|..++.+.++.+.+.|.++|+.|+..-
T Consensus 255 ~~~Le~~l~~~~~~~~~~k~ivl~nP~-NPTG~vls~e~l~~Iv~~a~~~~l~lI~DE 311 (534)
T PLN02231 255 ISELKKQLEDARSKGITVRALVVINPG-NPTGQVLAEENQRDIVEFCKQEGLVLLADE 311 (534)
T ss_pred HHHHHHHHHHHhhcCCCeEEEEEeCCC-CCCCcCCCHHHHHHHHHHHHHcCCEEEEEc
Confidence 4666665543 1 45665443 43 367888999999999999999999887653
No 328
>cd03465 URO-D_like The URO-D _like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane.
Probab=34.62 E-value=2.2e+02 Score=26.32 Aligned_cols=68 Identities=15% Similarity=-0.100 Sum_probs=38.5
Q ss_pred HHHHHHHhCCCcEEEEEEcCCC-C-----cchHHHHHHHHHhcCCc--eEEEecCCCCCCCCcCCcHHHHHHHHHHh
Q 019335 123 LVTSVLKKYPSKFVGCCLANPA-E-----DVIGIKQLEQLILKDGF--RAVRFNPYLWPSGQQMTNEVGKAMFSKAG 191 (342)
Q Consensus 123 ~~~~~~~~~p~r~~g~~~i~p~-~-----~~~~~~eler~~~~~g~--~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~ 191 (342)
.+.++.+.++++....+.++|. . +++..++++++++..+- .|.-+.+... -...-..+.+..+.+++.
T Consensus 254 dl~~~~~~~g~~~~i~G~id~~~~l~~gt~eei~~~v~~~l~~~~~~~~~~il~~gc~-i~~~~p~enl~a~v~a~~ 329 (330)
T cd03465 254 DLAEAKKKVGDKACLMGNLDPIDVLLNGSPEEIKEEVKELLEKLLKGGGGYILSSGCE-IPPDTPIENIKAMIDAVR 329 (330)
T ss_pred CHHHHHHHhCCceEEEeCcChHHhhcCCCHHHHHHHHHHHHHHHhCCCCCEEEeCCCC-CCCCCCHHHHHHHHHHHh
Confidence 4556677777777777777775 1 23455677777654332 5566665531 011222356667766664
No 329
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=34.44 E-value=3.9e+02 Score=24.96 Aligned_cols=119 Identities=13% Similarity=0.158 Sum_probs=59.6
Q ss_pred hHHHHHHhHHC-CCceEEEeCCCCCcc---chHHHHHHHHhCCCc-EEEEE----EcCCCCcchHHHHHHHHHhcCCc-e
Q 019335 94 VDFLLQCMEEA-SVDGALIVQPINHKF---DHSLVTSVLKKYPSK-FVGCC----LANPAEDVIGIKQLEQLILKDGF-R 163 (342)
Q Consensus 94 ~~~ll~~md~~-GI~~~v~~~~~~~~~---~N~~~~~~~~~~p~r-~~g~~----~i~p~~~~~~~~eler~~~~~g~-~ 163 (342)
.+..++.+.+. ||...++.+..+.-. +-.++++.+++.|.. .+.+. ..+|..-. .+.++.+ ++.|. .
T Consensus 124 ~~~~i~~i~~~~~I~~VilSGGDPl~~~~~~L~~ll~~l~~i~~v~~iri~Tr~~v~~p~rit--~ell~~L-~~~g~~v 200 (321)
T TIGR03822 124 LDAAFAYIADHPEIWEVILTGGDPLVLSPRRLGDIMARLAAIDHVKIVRFHTRVPVADPARVT--PALIAAL-KTSGKTV 200 (321)
T ss_pred HHHHHHHHHhCCCccEEEEeCCCcccCCHHHHHHHHHHHHhCCCccEEEEeCCCcccChhhcC--HHHHHHH-HHcCCcE
Confidence 34555666544 888776665433221 223555556666641 12232 23454321 1223333 44453 2
Q ss_pred EEEecCCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEEec--cCCCCC---HHHHHHHHHhC
Q 019335 164 AVRFNPYLWPSGQQMTNEVGKAMFSKAGELGVPVGFMCM--KGLNLH---ISEIEELCTEF 219 (342)
Q Consensus 164 Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH~~--~~~~~~---~~~l~~l~~~~ 219 (342)
.|.++... + ..+ .+.....++.+.+.|++|...+. .+.... +..+.+.+.+.
T Consensus 201 ~i~l~~~h-~--~el-~~~~~~ai~~L~~~Gi~v~~q~vLl~gvNd~~~~l~~l~~~l~~~ 257 (321)
T TIGR03822 201 YVALHANH-A--REL-TAEARAACARLIDAGIPMVSQSVLLRGVNDDPETLAALMRAFVEC 257 (321)
T ss_pred EEEecCCC-h--hhc-CHHHHHHHHHHHHcCCEEEEEeeEeCCCCCCHHHHHHHHHHHHhc
Confidence 34444431 1 223 35667788889999999977652 222233 34455555555
No 330
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=34.28 E-value=1.7e+02 Score=27.03 Aligned_cols=24 Identities=25% Similarity=0.156 Sum_probs=15.1
Q ss_pred cHHHHHHHHHHhhhCCeEEEEecc
Q 019335 180 NEVGKAMFSKAGELGVPVGFMCMK 203 (342)
Q Consensus 180 ~~~~~~~~~~a~e~~lpv~iH~~~ 203 (342)
.+....+++.|++.+.||.+....
T Consensus 28 ~e~~~avi~AAe~~~sPvIiq~~~ 51 (285)
T PRK07709 28 LEWTQAILAAAEEEKSPVILGVSE 51 (285)
T ss_pred HHHHHHHHHHHHHHCCCEEEEcCc
Confidence 355566666666666666666543
No 331
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=34.18 E-value=3.2e+02 Score=23.93 Aligned_cols=69 Identities=14% Similarity=0.123 Sum_probs=47.5
Q ss_pred CChHHHHHHhHHCCCceEEEeCCCCCccchHHHHHHHHhCCC-cEEEEEEcCCCCcchHHHHHHHHHhcCCceEEEecCC
Q 019335 92 GHVDFLLQCMEEASVDGALIVQPINHKFDHSLVTSVLKKYPS-KFVGCCLANPAEDVIGIKQLEQLILKDGFRAVRFNPY 170 (342)
Q Consensus 92 ~~~~~ll~~md~~GI~~~v~~~~~~~~~~N~~~~~~~~~~p~-r~~g~~~i~p~~~~~~~~eler~~~~~g~~Gvk~~~~ 170 (342)
.++.++.+.+ +.|.+..-+++....+ -+++..+...+|+ +|.+.+.|++ +.+.+++ +.|..++.+...
T Consensus 117 ~T~~E~~~A~-~~Gad~vklFPa~~~G--~~~ik~l~~~~p~ip~~atGGI~~-------~N~~~~l-~aGa~~vavgs~ 185 (213)
T PRK06552 117 MTVTEIVTAL-EAGSEIVKLFPGSTLG--PSFIKAIKGPLPQVNVMVTGGVNL-------DNVKDWF-AAGADAVGIGGE 185 (213)
T ss_pred CCHHHHHHHH-HcCCCEEEECCcccCC--HHHHHHHhhhCCCCEEEEECCCCH-------HHHHHHH-HCCCcEEEEchH
Confidence 4677776665 5899998887654333 5677777778885 6777777776 3455664 668888877654
Q ss_pred C
Q 019335 171 L 171 (342)
Q Consensus 171 ~ 171 (342)
.
T Consensus 186 l 186 (213)
T PRK06552 186 L 186 (213)
T ss_pred H
Confidence 3
No 332
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=34.00 E-value=2.2e+02 Score=27.17 Aligned_cols=75 Identities=19% Similarity=0.205 Sum_probs=47.1
Q ss_pred CcHHHHHHHHHHhhhCCeEEEEeccCCC--CCH----HHHHHHHHhCCCCcEEecccCCCCCCCCchhhHhHHHHhc-c-
Q 019335 179 TNEVGKAMFSKAGELGVPVGFMCMKGLN--LHI----SEIEELCTEFPSTTVLLDHLAFCKPPSNDEESLAFSNLLK-L- 250 (342)
Q Consensus 179 ~~~~~~~~~~~a~e~~lpv~iH~~~~~~--~~~----~~l~~l~~~~P~lk~vl~H~G~~~p~~~~~~~~~~~~~~~-l- 250 (342)
+.+....+++.|++.+.||.+....+.- ... ..+..++++.+++.+++ |+-.+. .++.+.+ +
T Consensus 25 n~e~~~aii~AAEe~~sPvIlq~s~~~~~~~g~~~~~~~~~~~ae~~~~VPVal-HLDHg~---------~~e~i~~Ai~ 94 (347)
T TIGR01521 25 NMEQMRAIMEAADKTDSPVILQASRGARSYAGAPFLRHLILAAIEEYPHIPVVM-HQDHGN---------SPATCQRAIQ 94 (347)
T ss_pred CHHHHHHHHHHHHHhCCCEEEECCcchhhhCCHHHHHHHHHHHHHhCCCCcEEE-ECCCCC---------CHHHHHHHHH
Confidence 4578899999999999999999865311 112 24556677776555543 554431 1222222 2
Q ss_pred cCCCcEEEecCcc
Q 019335 251 SRFPQVYVKFSAL 263 (342)
Q Consensus 251 ~~~~Nvy~~~S~~ 263 (342)
+.+..|.+|-|..
T Consensus 95 ~GFtSVMiDgS~l 107 (347)
T TIGR01521 95 LGFTSVMMDGSLR 107 (347)
T ss_pred cCCCEEeecCcCC
Confidence 2577899998875
No 333
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=33.99 E-value=2e+02 Score=26.37 Aligned_cols=20 Identities=30% Similarity=0.232 Sum_probs=8.9
Q ss_pred HHHHHHHHHhhhCCeEEEEe
Q 019335 182 VGKAMFSKAGELGVPVGFMC 201 (342)
Q Consensus 182 ~~~~~~~~a~e~~lpv~iH~ 201 (342)
....+++.|++.+.||.+.+
T Consensus 25 ~~~avi~AAe~~~sPvIi~~ 44 (276)
T cd00947 25 TLKAILEAAEETRSPVILQI 44 (276)
T ss_pred HHHHHHHHHHHhCCCEEEEc
Confidence 33444444444444444443
No 334
>cd06285 PBP1_LacI_like_7 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=33.96 E-value=3.2e+02 Score=23.82 Aligned_cols=129 Identities=12% Similarity=0.078 Sum_probs=66.6
Q ss_pred hHHHHHHhHHCCCceEEEeCCCCCccchHHHHHHHHhCCCcEEEEE-------EcCCCCcchHHHHHHHHHhcCCceEEE
Q 019335 94 VDFLLQCMEEASVDGALIVQPINHKFDHSLVTSVLKKYPSKFVGCC-------LANPAEDVIGIKQLEQLILKDGFRAVR 166 (342)
Q Consensus 94 ~~~ll~~md~~GI~~~v~~~~~~~~~~N~~~~~~~~~~p~r~~g~~-------~i~p~~~~~~~~eler~~~~~g~~Gvk 166 (342)
..++++.+...++++.++.+.. .++..++.+++.+-.++.+- .+..+... +..++-+++.+.|.+=+.
T Consensus 44 ~~~~i~~l~~~~~dgiii~~~~----~~~~~~~~~~~~~iPvv~~~~~~~~~~~V~~d~~~-ag~~a~~~L~~~g~~~i~ 118 (265)
T cd06285 44 QRRAIEMLLDRRVDGLILGDAR----SDDHFLDELTRRGVPFVLVLRHAGTSPAVTGDDVL-GGRLATRHLLDLGHRRIA 118 (265)
T ss_pred HHHHHHHHHHcCCCEEEEecCC----CChHHHHHHHHcCCCEEEEccCCCCCCEEEeCcHH-HHHHHHHHHHHCCCccEE
Confidence 4567888889999999987532 12223333343321222211 12222222 333344443456766555
Q ss_pred ecCCCCCCCCcCCcHHHHHHHHHHhhhCCeEEE-EeccCCCCC----HHHHHHHHHhCCCCcEEecccC
Q 019335 167 FNPYLWPSGQQMTNEVGKAMFSKAGELGVPVGF-MCMKGLNLH----ISEIEELCTEFPSTTVLLDHLA 230 (342)
Q Consensus 167 ~~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~i-H~~~~~~~~----~~~l~~l~~~~P~lk~vl~H~G 230 (342)
+.... .+......+...+.+.++++|+.+.. +...+ .+. ...+.+++++.|+...|++...
T Consensus 119 ~i~~~--~~~~~~~~R~~Gf~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~ai~~~~d 184 (265)
T cd06285 119 VLAGP--DYASTARDRLAGFRAALAEAGIEVPPERIVYS-GFDIEGGEAAAEKLLRSDSPPTAIFAVND 184 (265)
T ss_pred EEeCC--cccccHHHHHHHHHHHHHHcCCCCChhhEEeC-CCCHHHHHHHHHHHHcCCCCCCEEEEcCc
Confidence 44321 12223456788899999999986521 11111 112 2346667777777777776543
No 335
>PLN02397 aspartate transaminase
Probab=33.72 E-value=4.5e+02 Score=25.45 Aligned_cols=40 Identities=15% Similarity=-0.081 Sum_probs=24.7
Q ss_pred CceEEEecCCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEE
Q 019335 161 GFRAVRFNPYLWPSGQQMTNEVGKAMFSKAGELGVPVGFM 200 (342)
Q Consensus 161 g~~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH 200 (342)
+.+.+-+.....|.|..++.+.++.+.+.|.++|+.|...
T Consensus 194 ~~~~i~~~~P~NPTG~v~s~e~l~~i~~~a~~~~~~vI~D 233 (423)
T PLN02397 194 GSFVLLHACAHNPTGVDPTPEQWEQISDLIKSKNHLPFFD 233 (423)
T ss_pred CCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEe
Confidence 3444444321135577777777788888888887776554
No 336
>PLN02368 alanine transaminase
Probab=33.63 E-value=4.3e+02 Score=25.55 Aligned_cols=39 Identities=18% Similarity=0.111 Sum_probs=24.7
Q ss_pred CceEEEe-cCCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEE
Q 019335 161 GFRAVRF-NPYLWPSGQQMTNEVGKAMFSKAGELGVPVGFM 200 (342)
Q Consensus 161 g~~Gvk~-~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH 200 (342)
+.+.+-+ +|. .|.|..++.+.++.+.+.|.++|+.|..-
T Consensus 210 ~~k~l~l~nP~-NPTG~v~s~e~l~~l~~~a~~~~~~II~D 249 (407)
T PLN02368 210 TVRAMVIINPG-NPTGQCLSEANLREILKFCYQERLVLLGD 249 (407)
T ss_pred CeEEEEEECCC-CCCCccCCHHHHHHHHHHHHHcCCEEEEE
Confidence 3454443 343 35566777777788888888887777543
No 337
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=33.47 E-value=3.7e+02 Score=24.40 Aligned_cols=140 Identities=16% Similarity=0.047 Sum_probs=72.5
Q ss_pred hHHHHHHhHHCCCceEEEeCCCCCccchHHHHHHHHhC--CCcEEEEEEcCCCCcc-hHHHHHHHHHhcCCceEEEecCC
Q 019335 94 VDFLLQCMEEASVDGALIVQPINHKFDHSLVTSVLKKY--PSKFVGCCLANPAEDV-IGIKQLEQLILKDGFRAVRFNPY 170 (342)
Q Consensus 94 ~~~ll~~md~~GI~~~v~~~~~~~~~~N~~~~~~~~~~--p~r~~g~~~i~p~~~~-~~~~eler~~~~~g~~Gvk~~~~ 170 (342)
...+++.+++.||+..=+-.+.....+-+++..+.+.. .-++.+++...+.+.. ...+.+++. .+.|...|++...
T Consensus 22 k~~i~~~L~~~Gv~~IE~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~a-~~~g~~~i~i~~~ 100 (273)
T cd07941 22 KLRIARKLDELGVDYIEGGWPGSNPKDTEFFARAKKLKLKHAKLAAFGSTRRAGVKAEEDPNLQAL-LEAGTPVVTIFGK 100 (273)
T ss_pred HHHHHHHHHHcCCCEEEecCCcCCHHHHHHHHHHHHcCCCCcEEEEEecccccCCCccchHHHHHH-HhCCCCEEEEEEc
Confidence 35567789999999887633322223334444444432 2356655533222111 012356666 4678888876522
Q ss_pred CC------CCCCcC--CcHHHHHHHHHHhhhCCeEEE---EeccCCCCCHHHHHHHHHhC----CCCcEEecccCCCCC
Q 019335 171 LW------PSGQQM--TNEVGKAMFSKAGELGVPVGF---MCMKGLNLHISEIEELCTEF----PSTTVLLDHLAFCKP 234 (342)
Q Consensus 171 ~~------~~g~~l--~~~~~~~~~~~a~e~~lpv~i---H~~~~~~~~~~~l~~l~~~~----P~lk~vl~H~G~~~p 234 (342)
.. ..+... .-+.+.+..+++.++|+.|.+ +..++....+..+.+++++. ++.-.+.+..|...|
T Consensus 101 ~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~g~~~i~l~DT~G~~~P 179 (273)
T cd07941 101 SWDLHVTEALGTTLEENLAMIRDSVAYLKSHGREVIFDAEHFFDGYKANPEYALATLKAAAEAGADWLVLCDTNGGTLP 179 (273)
T ss_pred CCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEeEEeccccCCCCHHHHHHHHHHHHhCCCCEEEEecCCCCCCH
Confidence 10 001111 113567788899999998877 33233223455555444332 333334677777654
No 338
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=33.32 E-value=1.1e+02 Score=28.03 Aligned_cols=47 Identities=19% Similarity=0.145 Sum_probs=36.3
Q ss_pred chHHHHHHHHHhcCCceEEEecCCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEEecc
Q 019335 147 VIGIKQLEQLILKDGFRAVRFNPYLWPSGQQMTNEVGKAMFSKAGELGVPVGFMCMK 203 (342)
Q Consensus 147 ~~~~~eler~~~~~g~~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH~~~ 203 (342)
+++++...|.+++.|+.||++... ....+..+.+.+.|+||+-|.+-
T Consensus 93 ~~av~~a~r~~~~aGa~aVkiEdg----------~~~~~~I~al~~agIpV~gHiGL 139 (264)
T PRK00311 93 EQALRNAGRLMKEAGAHAVKLEGG----------EEVAETIKRLVERGIPVMGHLGL 139 (264)
T ss_pred HHHHHHHHHHHHHhCCeEEEEcCc----------HHHHHHHHHHHHCCCCEeeeecc
Confidence 345566677777789999998742 35668888999999999999873
No 339
>PRK09461 ansA cytoplasmic asparaginase I; Provisional
Probab=33.29 E-value=1.9e+02 Score=27.37 Aligned_cols=48 Identities=17% Similarity=0.232 Sum_probs=34.6
Q ss_pred HHHHHHHhcCCceEEEecCCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEEe
Q 019335 151 KQLEQLILKDGFRAVRFNPYLWPSGQQMTNEVGKAMFSKAGELGVPVGFMC 201 (342)
Q Consensus 151 ~eler~~~~~g~~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH~ 201 (342)
+.|+.++ +.|.+||-+.... .|.-..++.+.+.++.+.+.|+||.+-+
T Consensus 224 ~~l~~~~-~~~~~GiVl~~~G--~Gn~p~~~~~~~~l~~~~~~Gi~VV~~S 271 (335)
T PRK09461 224 EVVRNFL-RQPVKALILRSYG--VGNAPQNPALLQELKEASERGIVVVNLT 271 (335)
T ss_pred HHHHHHH-hCCCCEEEEccCC--CCCCCCCHHHHHHHHHHHHCCCEEEEeC
Confidence 4566554 4589999888653 3544456788899999999999997754
No 340
>COG1608 Predicted archaeal kinase [General function prediction only]
Probab=33.24 E-value=56 Score=29.35 Aligned_cols=41 Identities=15% Similarity=0.215 Sum_probs=28.4
Q ss_pred CCcEEEecCcccc-cccCCCCCCCchhHHHHHHHhcCCCcEEEccCCCCC
Q 019335 253 FPQVYVKFSALFR-VSRMPFPYQDLSSPLSQVVSSFGANRVMWGSDFPYV 301 (342)
Q Consensus 253 ~~Nvy~~~S~~~~-~~~~~~~~~~~~~~l~~~i~~~G~dRilfGSD~P~~ 301 (342)
+..|++|-+.-++ .|. .+.+.++.+.+++||++|+||-+..
T Consensus 133 ~GDVv~d~~~g~~IiSG--------DdIv~~LA~~l~pd~v~f~tdVdGV 174 (252)
T COG1608 133 YGDVVPDDDNGYEIISG--------DDIVLHLAKELKPDRVIFLTDVDGV 174 (252)
T ss_pred ecceEEcCCCceEEEec--------cHHHHHHHHHhCCCEEEEEecCCce
Confidence 5567777663222 121 2578888889999999999996653
No 341
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=33.19 E-value=95 Score=29.33 Aligned_cols=124 Identities=10% Similarity=-0.000 Sum_probs=72.3
Q ss_pred hHHHHHHhHHCCCceEEEeCCCCCcc---chH---HHHHHHHhCCCcEEEEEEcCCCCcc---hHHHHHHHHHhcCCceE
Q 019335 94 VDFLLQCMEEASVDGALIVQPINHKF---DHS---LVTSVLKKYPSKFVGCCLANPAEDV---IGIKQLEQLILKDGFRA 164 (342)
Q Consensus 94 ~~~ll~~md~~GI~~~v~~~~~~~~~---~N~---~~~~~~~~~p~r~~g~~~i~p~~~~---~~~~eler~~~~~g~~G 164 (342)
-..|++.|.+.|.......--..... .-. .+++.+.+. -+..++-|+|.--. .....+++. ++.|+.|
T Consensus 18 ~~~Yi~~~~~~Gf~~IFtsl~~~~~~~~~~~~~~~ell~~Ankl--g~~vivDvnPsil~~l~~S~~~l~~f-~e~G~~g 94 (360)
T COG3589 18 DIAYIDRMHKYGFKRIFTSLLIPEEDAELYFHRFKELLKEANKL--GLRVIVDVNPSILKELNISLDNLSRF-QELGVDG 94 (360)
T ss_pred HHHHHHHHHHcCccceeeecccCCchHHHHHHHHHHHHHHHHhc--CcEEEEEcCHHHHhhcCCChHHHHHH-HHhhhhh
Confidence 46789999999998876532111111 112 233333343 47788889987421 144567777 7899999
Q ss_pred EEecCCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEEeccCCCCCHHHHHHHHHhCCCCcE-EecccCCCCCC
Q 019335 165 VRFNPYLWPSGQQMTNEVGKAMFSKAGELGVPVGFMCMKGLNLHISEIEELCTEFPSTTV-LLDHLAFCKPP 235 (342)
Q Consensus 165 vk~~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH~~~~~~~~~~~l~~l~~~~P~lk~-vl~H~G~~~p~ 235 (342)
+|+.-.. .. ++ ...+...++-|.+.+... -..+..+...-++++- ..+|-..|.|+
T Consensus 95 lRlD~gf-----S~-----ee-i~~ms~~~lkieLN~S~i----t~~l~~l~~~~an~~nl~~cHNyYPr~y 151 (360)
T COG3589 95 LRLDYGF-----SG-----EE-IAEMSKNPLKIELNASTI----TELLDSLLAYKANLENLEGCHNYYPRPY 151 (360)
T ss_pred eeecccC-----CH-----HH-HHHHhcCCeEEEEchhhh----HHHHHHHHHhccchhhhhhcccccCCcc
Confidence 9987432 11 11 223334457777665432 1357777777776554 45666665443
No 342
>COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]
Probab=33.08 E-value=2.2e+02 Score=25.27 Aligned_cols=72 Identities=15% Similarity=0.122 Sum_probs=39.4
Q ss_pred HhcCCceEEEecCCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEEeccCC-CCC---------H---HHHHHHHHhCCCCc
Q 019335 157 ILKDGFRAVRFNPYLWPSGQQMTNEVGKAMFSKAGELGVPVGFMCMKGL-NLH---------I---SEIEELCTEFPSTT 223 (342)
Q Consensus 157 ~~~~g~~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH~~~~~-~~~---------~---~~l~~l~~~~P~lk 223 (342)
+.+.|+.|+.+.+.. ....+......+-+.++++|+.+..|..... ... + ....+++.+. +.+
T Consensus 24 ~~~~G~~gvEi~~~~---~~~~~~~~~~~l~~~l~~~gl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~l-g~~ 99 (274)
T COG1082 24 AAELGFDGVELSPGD---LFPADYKELAELKELLADYGLEITSLAPFSNNLLSPDEEEREEALEELKRAIELAKEL-GAK 99 (274)
T ss_pred HHHhCCCeEecCCcc---cCCchhhhHHHHHHHHHHcCcEEEeecccCCCcCCCchhhHHHHHHHHHHHHHHHHHc-CCC
Confidence 356778888777521 1122222367777788888888877654321 111 1 1245556666 355
Q ss_pred EEecccCCC
Q 019335 224 VLLDHLAFC 232 (342)
Q Consensus 224 ~vl~H~G~~ 232 (342)
.++.|.|..
T Consensus 100 ~vv~~~g~~ 108 (274)
T COG1082 100 VVVVHPGLG 108 (274)
T ss_pred eEEeecccC
Confidence 555566653
No 343
>PRK08175 aminotransferase; Validated
Probab=32.79 E-value=1.6e+02 Score=28.03 Aligned_cols=50 Identities=20% Similarity=0.154 Sum_probs=35.8
Q ss_pred HHHHHHHHhc--CCceEEEec-CCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEE
Q 019335 150 IKQLEQLILK--DGFRAVRFN-PYLWPSGQQMTNEVGKAMFSKAGELGVPVGFM 200 (342)
Q Consensus 150 ~~eler~~~~--~g~~Gvk~~-~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH 200 (342)
.+.+++.+++ ...+.|-+. |. .|.|..++.++++.+.+.|+++|+.|.+-
T Consensus 151 ~~~l~~~l~~~~~~~~~v~i~~p~-NPtG~~~~~~~~~~i~~~a~~~~i~ii~D 203 (395)
T PRK08175 151 FNELERAIRESYPKPKMMILGFPS-NPTAQCVELEFFEKVVALAKRYDVLVVHD 203 (395)
T ss_pred HHHHHHHHhhccCCceEEEEeCCC-CCCCCCCCHHHHHHHHHHHHHcCcEEEEe
Confidence 5667665543 345666554 33 35688888999999999999999988764
No 344
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=32.75 E-value=3.8e+02 Score=24.29 Aligned_cols=132 Identities=11% Similarity=0.137 Sum_probs=68.5
Q ss_pred HHHHHHhHHCCCceEEEeCCCCCccchHHHHHHHHh-CCCcEEEEEEcCCCCcchHHHHHHHHHhcCCceEEEecCCCC-
Q 019335 95 DFLLQCMEEASVDGALIVQPINHKFDHSLVTSVLKK-YPSKFVGCCLANPAEDVIGIKQLEQLILKDGFRAVRFNPYLW- 172 (342)
Q Consensus 95 ~~ll~~md~~GI~~~v~~~~~~~~~~N~~~~~~~~~-~p~r~~g~~~i~p~~~~~~~~eler~~~~~g~~Gvk~~~~~~- 172 (342)
-++++.|++.||+..=+-.|.....+-+.+..+.+. .+.++.+++. +. .+.+++.. +.|+..|++.....
T Consensus 25 ~~i~~~L~~~Gv~~IEvG~P~~~~~~~~~~~~l~~~~~~~~v~~~~r--~~-----~~di~~a~-~~g~~~i~i~~~~S~ 96 (262)
T cd07948 25 IEIAKALDAFGVDYIELTSPAASPQSRADCEAIAKLGLKAKILTHIR--CH-----MDDARIAV-ETGVDGVDLVFGTSP 96 (262)
T ss_pred HHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHHHhCCCCCcEEEEec--CC-----HHHHHHHH-HcCcCEEEEEEecCH
Confidence 457778999999987654342211111112222211 1234444432 22 23566664 56888888653210
Q ss_pred -----CCCCcCC--cHHHHHHHHHHhhhCCeEEEEeccCCCCCHHHHHHHHHh---C-CCCcEEecccCCCCC
Q 019335 173 -----PSGQQMT--NEVGKAMFSKAGELGVPVGFMCMKGLNLHISEIEELCTE---F-PSTTVLLDHLAFCKP 234 (342)
Q Consensus 173 -----~~g~~l~--~~~~~~~~~~a~e~~lpv~iH~~~~~~~~~~~l~~l~~~---~-P~lk~vl~H~G~~~p 234 (342)
..+.... -+...+..+++.++|+.|.+...+.....+..+.+++++ . ++.-.+.+..|...|
T Consensus 97 ~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~eda~r~~~~~l~~~~~~~~~~g~~~i~l~Dt~G~~~P 169 (262)
T cd07948 97 FLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSSEDSFRSDLVDLLRVYRAVDKLGVNRVGIADTVGIATP 169 (262)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeeCCCCHHHHHHHHHHHHHcCCCEEEECCcCCCCCH
Confidence 0111111 134566778889999999998765433344444444433 3 333334566776544
No 345
>PLN02607 1-aminocyclopropane-1-carboxylate synthase
Probab=32.62 E-value=3.8e+02 Score=26.32 Aligned_cols=40 Identities=15% Similarity=0.101 Sum_probs=30.8
Q ss_pred CceEEEec-CCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEEe
Q 019335 161 GFRAVRFN-PYLWPSGQQMTNEVGKAMFSKAGELGVPVGFMC 201 (342)
Q Consensus 161 g~~Gvk~~-~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH~ 201 (342)
.+++|-+. |. .|.|..+..+.++.+.+.|+++|+.|..--
T Consensus 200 ~vk~lll~nP~-NPtG~~~s~e~l~~l~~~~~~~~i~lI~DE 240 (447)
T PLN02607 200 RVRGVLITNPS-NPLGATVQRSVLEDILDFVVRKNIHLVSDE 240 (447)
T ss_pred CeeEEEEeCCC-CCcCcccCHHHHHHHHHHHHHCCCEEEEec
Confidence 56777654 32 366788888999999999999999987553
No 346
>PRK07094 biotin synthase; Provisional
Probab=32.55 E-value=4.1e+02 Score=24.59 Aligned_cols=121 Identities=15% Similarity=0.085 Sum_probs=63.5
Q ss_pred ChHHHHH---HhHHCCCceEEEeCCCCCccchHHHHHHHH---hCCCcEEEEEEcCCCCcchHHHHHHHHHhcCCceEEE
Q 019335 93 HVDFLLQ---CMEEASVDGALIVQPINHKFDHSLVTSVLK---KYPSKFVGCCLANPAEDVIGIKQLEQLILKDGFRAVR 166 (342)
Q Consensus 93 ~~~~ll~---~md~~GI~~~v~~~~~~~~~~N~~~~~~~~---~~p~r~~g~~~i~p~~~~~~~~eler~~~~~g~~Gvk 166 (342)
+++++++ .+.+.|+...++..........+++.++++ +.++ +... +++... ..+.++++ ++.|+..+-
T Consensus 71 s~eei~~~~~~~~~~g~~~i~l~gG~~~~~~~~~l~~l~~~i~~~~~-l~i~--~~~g~~--~~e~l~~L-k~aG~~~v~ 144 (323)
T PRK07094 71 SPEEILECAKKAYELGYRTIVLQSGEDPYYTDEKIADIIKEIKKELD-VAIT--LSLGER--SYEEYKAW-KEAGADRYL 144 (323)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEecCCCCCCCHHHHHHHHHHHHccCC-ceEE--EecCCC--CHHHHHHH-HHcCCCEEE
Confidence 5666655 455689988877643211123455555554 3333 2211 232221 12455555 567887776
Q ss_pred ecCCCCC------CCCcCCcHHHHHHHHHHhhhCCeEEEEeccCCC-CCHH---HHHHHHHhC
Q 019335 167 FNPYLWP------SGQQMTNEVGKAMFSKAGELGVPVGFMCMKGLN-LHIS---EIEELCTEF 219 (342)
Q Consensus 167 ~~~~~~~------~g~~l~~~~~~~~~~~a~e~~lpv~iH~~~~~~-~~~~---~l~~l~~~~ 219 (342)
+...... -+...+-+.....++.+.++|+.+..+..-|.| ...+ +...++++.
T Consensus 145 ~glEs~~~~~~~~i~~~~s~~~~~~~i~~l~~~Gi~v~~~~iiGlpget~ed~~~~l~~l~~l 207 (323)
T PRK07094 145 LRHETADKELYAKLHPGMSFENRIACLKDLKELGYEVGSGFMVGLPGQTLEDLADDILFLKEL 207 (323)
T ss_pred eccccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCeecceEEEECCCCCHHHHHHHHHHHHhC
Confidence 5433110 012233456778899999999998777654442 3333 344455554
No 347
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=32.35 E-value=3.7e+02 Score=24.48 Aligned_cols=55 Identities=15% Similarity=0.129 Sum_probs=33.2
Q ss_pred HHHHHHHHHhcCCceEEEecCCCC---CCCC-cCCcHHHHHHHHHHhhhCCeEEEEecc
Q 019335 149 GIKQLEQLILKDGFRAVRFNPYLW---PSGQ-QMTNEVGKAMFSKAGELGVPVGFMCMK 203 (342)
Q Consensus 149 ~~~eler~~~~~g~~Gvk~~~~~~---~~g~-~l~~~~~~~~~~~a~e~~lpv~iH~~~ 203 (342)
...+..+.+++.|+..++...... +.+. -+..+.+..+.+.|+++|+|+..-..+
T Consensus 42 ~~~~~A~~lk~~g~~~~r~~~~kpRTs~~s~~G~g~~gl~~l~~~~~~~Gl~~~te~~d 100 (266)
T PRK13398 42 QMVKVAEKLKELGVHMLRGGAFKPRTSPYSFQGLGEEGLKILKEVGDKYNLPVVTEVMD 100 (266)
T ss_pred HHHHHHHHHHHcCCCEEEEeeecCCCCCCccCCcHHHHHHHHHHHHHHcCCCEEEeeCC
Confidence 334444444677877776553210 1111 134677888889999999999765543
No 348
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=32.16 E-value=63 Score=29.42 Aligned_cols=102 Identities=20% Similarity=0.278 Sum_probs=59.3
Q ss_pred CCChHHHHHHhHHCCCceEEEeCCCCCccchHHHHHHH-HhCCCc--EE----EEEEcCCC-CcchHHHHHHHHHhcCCc
Q 019335 91 PGHVDFLLQCMEEASVDGALIVQPINHKFDHSLVTSVL-KKYPSK--FV----GCCLANPA-EDVIGIKQLEQLILKDGF 162 (342)
Q Consensus 91 ~~~~~~ll~~md~~GI~~~v~~~~~~~~~~N~~~~~~~-~~~p~r--~~----g~~~i~p~-~~~~~~~eler~~~~~g~ 162 (342)
..+++..++..-+.|++... ++++ +++.. ..|-.+ ++ +.-.+-|. .....+..+|+.+ .+|.
T Consensus 42 l~d~e~~v~~v~~~g~dav~-~~~G--------~~~~~~~~y~~dvplivkl~~~t~l~~~~~~~~~~~~ve~ai-~lga 111 (265)
T COG1830 42 LEDPENIVAKVAEAGADAVA-MTPG--------IARSVHRGYAHDVPLIVKLNGSTSLSPDPNDQVLVATVEDAI-RLGA 111 (265)
T ss_pred ccCHHHHHHHHHhcCCCEEE-ecHh--------HHhhcCccccCCcCEEEEeccccccCCCcccceeeeeHHHHH-hCCC
Confidence 45788999988888998765 4432 11111 122111 11 11112222 2222345677775 7899
Q ss_pred eEEEecCCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEEec
Q 019335 163 RAVRFNPYLWPSGQQMTNEVGKAMFSKAGELGVPVGFMCM 202 (342)
Q Consensus 163 ~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH~~ 202 (342)
.+|..+.+.......-.-..+-.+.+.|.++|+|+.+++.
T Consensus 112 dAV~~~Vy~Gse~e~~~i~~~~~v~~~a~~~Gmp~v~~~Y 151 (265)
T COG1830 112 DAVGATVYVGSETEREMIENISQVVEDAHELGMPLVAWAY 151 (265)
T ss_pred cEEEEEEecCCcchHHHHHHHHHHHHHHHHcCCceEEEEe
Confidence 8888776531111112235677889999999999999886
No 349
>COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism]
Probab=32.05 E-value=1.1e+02 Score=28.63 Aligned_cols=41 Identities=20% Similarity=0.220 Sum_probs=32.4
Q ss_pred EEecCCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEEeccCC
Q 019335 165 VRFNPYLWPSGQQMTNEVGKAMFSKAGELGVPVGFMCMKGL 205 (342)
Q Consensus 165 vk~~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH~~~~~ 205 (342)
|++.....|.|.-++|+++..+=+.|+++|+|+.|....+.
T Consensus 183 ic~SRPtNPTGNVlTdeE~~kldalA~~~giPliIDnAYg~ 223 (417)
T COG3977 183 ICVSRPTNPTGNVLTDEELAKLDALARQHGIPLIIDNAYGV 223 (417)
T ss_pred EEecCCCCCCCCcccHHHHHHHHHHhhhcCCcEEEecccCC
Confidence 44443334568889999999999999999999999876553
No 350
>TIGR00587 nfo apurinic endonuclease (APN1). All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=31.99 E-value=1.8e+02 Score=26.31 Aligned_cols=79 Identities=15% Similarity=0.032 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCceEEEec---CCCCCCCCcCCcHHHHHHHHHHhhhCCe---EEEEeccCCC-------------CCHH
Q 019335 150 IKQLEQLILKDGFRAVRFN---PYLWPSGQQMTNEVGKAMFSKAGELGVP---VGFMCMKGLN-------------LHIS 210 (342)
Q Consensus 150 ~~eler~~~~~g~~Gvk~~---~~~~~~g~~l~~~~~~~~~~~a~e~~lp---v~iH~~~~~~-------------~~~~ 210 (342)
.+.+++. .+.|+.++.+. |..|. ...++......+-+.++++++. +.+|...... ..+.
T Consensus 14 ~~a~~~~-~~~G~~~~qif~~~P~~w~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~Hapy~iNlas~~~~~r~~sv~~~~ 91 (274)
T TIGR00587 14 QAAYNRA-AEIGATAFMFFLKSPRWWR-RPMLEEEVIDWFKAALETNKNLSQIVLVHAPYLINLASPDEEKEEKSLDVLD 91 (274)
T ss_pred HHHHHHH-HHhCCCEEEEEecCccccC-CCCCCHHHHHHHHHHHHHcCCCCcceeccCCeeeecCCCCHHHHHHHHHHHH
Q ss_pred HHHHHHHhCCCCcEEecccCC
Q 019335 211 EIEELCTEFPSTTVLLDHLAF 231 (342)
Q Consensus 211 ~l~~l~~~~P~lk~vl~H~G~ 231 (342)
...++++.+ +.+.|+-|.|.
T Consensus 92 ~~i~~A~~l-ga~~vv~H~G~ 111 (274)
T TIGR00587 92 EELKRCELL-GIMLYNFHPGS 111 (274)
T ss_pred HHHHHHHHc-CCCEEEECCCC
No 351
>COG1879 RbsB ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=31.98 E-value=2.9e+02 Score=25.28 Aligned_cols=45 Identities=31% Similarity=0.407 Sum_probs=26.8
Q ss_pred HHHHHHHHHhcCCceEEEecCCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEEec
Q 019335 149 GIKQLEQLILKDGFRAVRFNPYLWPSGQQMTNEVGKAMFSKAGELGVPVGFMCM 202 (342)
Q Consensus 149 ~~~eler~~~~~g~~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH~~ 202 (342)
.+..++.++ ..|..||-+.+. +...+.+.++++.+.|+||..+-.
T Consensus 80 Q~~~i~~~i-a~~~daIiv~~~--------d~~~~~~~v~~a~~aGIpVv~~d~ 124 (322)
T COG1879 80 QIAQIEDLI-AQGVDAIIINPV--------DPDALTPAVKKAKAAGIPVVTVDS 124 (322)
T ss_pred HHHHHHHHH-HcCCCEEEEcCC--------ChhhhHHHHHHHHHCCCcEEEEec
Confidence 445555553 556666666553 234556777777777777765543
No 352
>cd06278 PBP1_LacI_like_2 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=31.82 E-value=3.4e+02 Score=23.48 Aligned_cols=129 Identities=15% Similarity=0.105 Sum_probs=62.2
Q ss_pred hHHHHHHhHHCCCceEEEeCCCCCccchHHHHHHHHhCCCcEEEEEE---------cCCCCcchHHHHHHHHHhcCCceE
Q 019335 94 VDFLLQCMEEASVDGALIVQPINHKFDHSLVTSVLKKYPSKFVGCCL---------ANPAEDVIGIKQLEQLILKDGFRA 164 (342)
Q Consensus 94 ~~~ll~~md~~GI~~~v~~~~~~~~~~N~~~~~~~~~~p~r~~g~~~---------i~p~~~~~~~~eler~~~~~g~~G 164 (342)
..+.++.+...++++.|+..... +...++.+.+..-.++.+.. +...+.. +...+-+.+.+.|.+=
T Consensus 43 ~~~~i~~~~~~~vdgiii~~~~~----~~~~~~~~~~~~ipvV~~~~~~~~~~~~~v~~d~~~-~g~~~~~~l~~~g~~~ 117 (266)
T cd06278 43 LDAALRQLLQYRVDGVIVTSGTL----SSELAEECRRNGIPVVLINRYVDGPGVDAVCSDNYE-AGRLAAELLLAKGCRR 117 (266)
T ss_pred HHHHHHHHHHcCCCEEEEecCCC----CHHHHHHHhhcCCCEEEECCccCCCCCCEEEEChHH-HHHHHHHHHHHCCCce
Confidence 45567777788888888764321 22234444433222332211 1111222 2233333333445544
Q ss_pred EEecCCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEEeccCCC--CCHHHHHHHHHhCCCCcEEeccc
Q 019335 165 VRFNPYLWPSGQQMTNEVGKAMFSKAGELGVPVGFMCMKGLN--LHISEIEELCTEFPSTTVLLDHL 229 (342)
Q Consensus 165 vk~~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH~~~~~~--~~~~~l~~l~~~~P~lk~vl~H~ 229 (342)
|.+.... .+......+...+.+.++++++.+..-...... .....+..++++.|+.+.|++..
T Consensus 118 i~~i~~~--~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~ 182 (266)
T cd06278 118 IAFIGGP--ADTSTSRERERGFRDALAAAGVPVVVEEAGDYSYEGGYEAARRLLASRPRPDAIFCAN 182 (266)
T ss_pred EEEEcCC--CcccchHHHHHHHHHHHHHcCCChhhhccCCCCHHHHHHHHHHHHhcCCCCCEEEEcC
Confidence 4443221 122334556777888888888764221111100 11235667777777777777644
No 353
>KOG2949 consensus Ketopantoate hydroxymethyltransferase [Coenzyme transport and metabolism]
Probab=31.62 E-value=1.9e+02 Score=25.82 Aligned_cols=94 Identities=15% Similarity=0.131 Sum_probs=56.1
Q ss_pred HhHHCCCceEEEeCCC---CCcc-------chHH---HHHHHHhCCCcEE----EEEEcCCCCcchHHHHHHHHHhcCCc
Q 019335 100 CMEEASVDGALIVQPI---NHKF-------DHSL---VTSVLKKYPSKFV----GCCLANPAEDVIGIKQLEQLILKDGF 162 (342)
Q Consensus 100 ~md~~GI~~~v~~~~~---~~~~-------~N~~---~~~~~~~~p~r~~----g~~~i~p~~~~~~~~eler~~~~~g~ 162 (342)
..+++|++-.++-... .++. -|+. ....++..+.++. +|....-.-. ++++.--+.+++.|+
T Consensus 53 ~~~~ag~dv~LVGDSl~Mt~~GhdtTlpiSl~e~~yH~~sV~Rga~~~llv~DlPFgtyeS~~s-da~knAv~vmk~~g~ 131 (306)
T KOG2949|consen 53 HFDTAGIDVCLVGDSLAMTVHGHDTTLPISLEEMLYHCRSVARGAKRPLLVGDLPFGTYESSWS-DAVKNAVRVMKEGGM 131 (306)
T ss_pred hhhhcCCcEEEeccchhheeeccccceeeeHHHHHHHHHHHHccCCCceEEEecCcccccccHH-HHHHHHHHHHHhcCC
Confidence 4567788877654321 1111 1332 2445555666654 1222222212 356666666677899
Q ss_pred eEEEecCCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEEecc
Q 019335 163 RAVRFNPYLWPSGQQMTNEVGKAMFSKAGELGVPVGFMCMK 203 (342)
Q Consensus 163 ~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH~~~ 203 (342)
..||+... + ..-..+.+++-|.|+||.-|.+-
T Consensus 132 ~~vK~EgG----s-----~~~~~~~~~l~ergipV~gHvGL 163 (306)
T KOG2949|consen 132 DAVKLEGG----S-----NSRITAAKRLVERGIPVMGHVGL 163 (306)
T ss_pred ceEEEccC----c-----HHHHHHHHHHHHcCCceeeeccC
Confidence 99998853 1 34467888899999999999974
No 354
>PRK06290 aspartate aminotransferase; Provisional
Probab=31.55 E-value=4.8e+02 Score=25.16 Aligned_cols=49 Identities=22% Similarity=0.229 Sum_probs=35.9
Q ss_pred HHHHHHHHhcCCceEEEec-CCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEE
Q 019335 150 IKQLEQLILKDGFRAVRFN-PYLWPSGQQMTNEVGKAMFSKAGELGVPVGFM 200 (342)
Q Consensus 150 ~~eler~~~~~g~~Gvk~~-~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH 200 (342)
++++++.+ ..+.+.|-+. |. .|.|..++.++.+.+.+.|+++|+.|..-
T Consensus 169 ~~~l~~~~-~~~~k~i~l~nP~-NPTG~v~s~e~l~~l~~la~~~~~~iI~D 218 (410)
T PRK06290 169 LDSIPKDI-KEKAKLLYLNYPN-NPTGAVATKEFYEEVVDFAKENNIIVVQD 218 (410)
T ss_pred HHHHHHhh-cccceEEEEECCC-CCCCcCCCHHHHHHHHHHHHHcCeEEEEe
Confidence 45566554 3366777666 54 46788899999999999999999877644
No 355
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=31.39 E-value=68 Score=30.45 Aligned_cols=47 Identities=13% Similarity=0.198 Sum_probs=33.9
Q ss_pred HHHHHhcCCceEEEecCCCCCCCC----cCCcHHHHHHHHHHhhhCCeEEEE
Q 019335 153 LEQLILKDGFRAVRFNPYLWPSGQ----QMTNEVGKAMFSKAGELGVPVGFM 200 (342)
Q Consensus 153 ler~~~~~g~~Gvk~~~~~~~~g~----~l~~~~~~~~~~~a~e~~lpv~iH 200 (342)
+++. .+.|..+|+++.++.++.. ......+..+.+.|.++|+|+++.
T Consensus 112 ve~a-~~~GAdAVk~lv~~~~d~~~~~~~~~~~~l~rv~~ec~~~giPlllE 162 (340)
T PRK12858 112 VRRI-KEAGADAVKLLLYYRPDEDDAINDRKHAFVERVGAECRANDIPFFLE 162 (340)
T ss_pred HHHH-HHcCCCEEEEEEEeCCCcchHHHHHHHHHHHHHHHHHHHcCCceEEE
Confidence 3444 5779999998876533212 123456889999999999999987
No 356
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=31.25 E-value=6e+02 Score=26.18 Aligned_cols=117 Identities=17% Similarity=0.183 Sum_probs=64.4
Q ss_pred HHHHHHhHHCCCceEEEeCCCC-----Cc-------cchHHHHHHHHhC--------------CCcEEEEEEcCCCCcch
Q 019335 95 DFLLQCMEEASVDGALIVQPIN-----HK-------FDHSLVTSVLKKY--------------PSKFVGCCLANPAEDVI 148 (342)
Q Consensus 95 ~~ll~~md~~GI~~~v~~~~~~-----~~-------~~N~~~~~~~~~~--------------p~r~~g~~~i~p~~~~~ 148 (342)
+..+..+...||+..+++.... +. .+-..++++.++. ++.++|.+. +|....
T Consensus 399 ~~~L~~~~~~Gv~nILaLrGD~p~~g~~~~~~~vfd~~a~dLv~~ir~~~~g~~~~g~~~~~~~~f~ig~A~-~P~~~~- 476 (612)
T PRK08645 399 QSHLLGLHALGIRNVLAITGDPAKVGDFPGATSVYDLNSFGLIKLIKQLNEGISYSGKPLGKKTNFSIGGAF-NPNVRN- 476 (612)
T ss_pred HHHHHHHHHcCCceEEEccCCCCCCCCCCCCCCCccccHHHHHHHHHHHhCCCCcCCCccCCCCceeeeEEe-CCCCCC-
Confidence 4445567789999998774311 11 1224567777763 222455554 565432
Q ss_pred HHHHHHHHHh--cCCceEEEecCCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEEeccCCCCCHHHHHHHHHhCCCC
Q 019335 149 GIKQLEQLIL--KDGFRAVRFNPYLWPSGQQMTNEVGKAMFSKAGELGVPVGFMCMKGLNLHISEIEELCTEFPST 222 (342)
Q Consensus 149 ~~~eler~~~--~~g~~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH~~~~~~~~~~~l~~l~~~~P~l 222 (342)
...+++++.+ +.|...+--.+ -++.+.+..+.+.+++.++||..=...- .....+..+.++.|++
T Consensus 477 ~~~d~~~L~~Ki~aGAdf~iTQ~-------~fd~~~~~~~~~~~~~~~vpIi~GImPi--~s~k~~~~~~~~~~Gv 543 (612)
T PRK08645 477 LDKEVKRLEKKIEAGADYFITQP-------VYDEELIEELLEATKHLGVPIFIGIMPL--VSYRNAEFLHNEVPGI 543 (612)
T ss_pred hHHHHHHHHHHHHcCCCEEEecc-------cCCHHHHHHHHHHHhcCCCCEEEEeeec--CCHHHHHHHHhCCCCC
Confidence 3456666543 34665553222 2355788999999988888986554311 1233444444445543
No 357
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included
Probab=31.11 E-value=3e+02 Score=22.55 Aligned_cols=93 Identities=16% Similarity=0.185 Sum_probs=51.2
Q ss_pred HHHHHHHhCCCcEEEEEEcCCCCcchHHHHHHHHHhcCCceEEEecCCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEEec
Q 019335 123 LVTSVLKKYPSKFVGCCLANPAEDVIGIKQLEQLILKDGFRAVRFNPYLWPSGQQMTNEVGKAMFSKAGELGVPVGFMCM 202 (342)
Q Consensus 123 ~~~~~~~~~p~r~~g~~~i~p~~~~~~~~eler~~~~~g~~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH~~ 202 (342)
.+..+.+++|+|++-+.. .|...--+.--+...|++.|.... ..+-...++++...+...++||.+...
T Consensus 29 ~~~~~~~~~p~r~i~~gI-----aE~~~vg~A~GlA~~G~~pi~~~~------~~f~~ra~dqi~~~~a~~~~pv~~~~~ 97 (156)
T cd07033 29 GLDKFAKKFPDRFIDVGI-----AEQNMVGIAAGLALHGLKPFVSTF------SFFLQRAYDQIRHDVALQNLPVKFVGT 97 (156)
T ss_pred CcHHHHHhCCCCeEEeCh-----hHHHHHHHHHHHHHCCCeEEEEEC------HHHHHHHHHHHHHHHhccCCCeEEEEE
Confidence 456677889999884322 111222222212233555544321 122345666776566677899887753
Q ss_pred c--------CCCCCHHHHHHHHHhCCCCcEEe
Q 019335 203 K--------GLNLHISEIEELCTEFPSTTVLL 226 (342)
Q Consensus 203 ~--------~~~~~~~~l~~l~~~~P~lk~vl 226 (342)
. |..++-.+-..+++..|+++++.
T Consensus 98 ~~g~~~~~~G~tH~~~~~~a~~~~iPg~~v~~ 129 (156)
T cd07033 98 HAGISVGEDGPTHQGIEDIALLRAIPNMTVLR 129 (156)
T ss_pred CCcEecCCCCcccchHHHHHHhcCCCCCEEEe
Confidence 2 11223445667888999998754
No 358
>COG1744 Med Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein [General function prediction only]
Probab=30.90 E-value=1.2e+02 Score=28.88 Aligned_cols=50 Identities=12% Similarity=0.108 Sum_probs=38.9
Q ss_pred CcHHHHHHHHHHhhhCCeEEEEeccCCCCCHHHHHHHHHhCCCCcEEecccCC
Q 019335 179 TNEVGKAMFSKAGELGVPVGFMCMKGLNLHISEIEELCTEFPSTTVLLDHLAF 231 (342)
Q Consensus 179 ~~~~~~~~~~~a~e~~lpv~iH~~~~~~~~~~~l~~l~~~~P~lk~vl~H~G~ 231 (342)
.+..+.+.++.+.+-|--+.+-++. .+...+..++.+||+++|++.....
T Consensus 82 ~~~~~~~~~~~~a~~g~~lI~~~gf---~~~d~~~~va~~~Pd~~F~iid~~~ 131 (345)
T COG1744 82 SEADYERALRALAEDGYDLIFGTGF---AFSDALEKVAAEYPDVKFVIIDGVV 131 (345)
T ss_pred chhHHHHHHHHHHhcCCCEEEEecc---chhhHHHHHHHHCCCCEEEEecCcc
Confidence 4678899999888877766555553 3556799999999999999887755
No 359
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=30.75 E-value=3.8e+02 Score=24.75 Aligned_cols=22 Identities=27% Similarity=0.252 Sum_probs=12.9
Q ss_pred HHHHHHHHHHhhhCCeEEEEec
Q 019335 181 EVGKAMFSKAGELGVPVGFMCM 202 (342)
Q Consensus 181 ~~~~~~~~~a~e~~lpv~iH~~ 202 (342)
+....+++.|++.+.||.+...
T Consensus 29 e~~~avi~AAee~~sPvIiq~~ 50 (284)
T PRK12737 29 ETLQVVVETAAELRSPVILAGT 50 (284)
T ss_pred HHHHHHHHHHHHhCCCEEEEcC
Confidence 4555666666666666665554
No 360
>PLN02727 NAD kinase
Probab=30.60 E-value=2.1e+02 Score=31.10 Aligned_cols=76 Identities=12% Similarity=0.007 Sum_probs=36.6
Q ss_pred HHHHHHHHhcCCceEEEecCCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEEeccC-CC---CCHHHHHHHH-HhCCCCcE
Q 019335 150 IKQLEQLILKDGFRAVRFNPYLWPSGQQMTNEVGKAMFSKAGELGVPVGFMCMKG-LN---LHISEIEELC-TEFPSTTV 224 (342)
Q Consensus 150 ~~eler~~~~~g~~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH~~~~-~~---~~~~~l~~l~-~~~P~lk~ 224 (342)
.+.+++++ +.||+-|-=... ++.. +.+.....=++|+++|+-+.-..... .. .++..+.+++ +.-|+=
T Consensus 271 pe~la~LA-~~GfKTIINLRp---d~E~-~q~~~~ee~eAae~~GL~yVhIPVs~~~apt~EqVe~fa~~l~~slpkP-- 343 (986)
T PLN02727 271 EEGLKWLL-EKGFKTIVDLRA---EIVK-DNFYQAAVDDAISSGKIEVVKIPVEVRTAPSAEQVEKFASLVSDSSKKP-- 343 (986)
T ss_pred HHHHHHHH-HCCCeEEEECCC---CCcC-CCchhHHHHHHHHHcCCeEEEeecCCCCCCCHHHHHHHHHHHHhhcCCC--
Confidence 35666664 567776643221 1221 23334556667777787765332211 11 2233444445 212221
Q ss_pred EecccCCC
Q 019335 225 LLDHLAFC 232 (342)
Q Consensus 225 vl~H~G~~ 232 (342)
|+.||..+
T Consensus 344 VLvHCKSG 351 (986)
T PLN02727 344 IYLHSKEG 351 (986)
T ss_pred EEEECCCC
Confidence 66677765
No 361
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=30.34 E-value=3.4e+02 Score=25.07 Aligned_cols=24 Identities=25% Similarity=0.174 Sum_probs=17.1
Q ss_pred cHHHHHHHHHHhhhCCeEEEEecc
Q 019335 180 NEVGKAMFSKAGELGVPVGFMCMK 203 (342)
Q Consensus 180 ~~~~~~~~~~a~e~~lpv~iH~~~ 203 (342)
.+....+++.|++.+.||.+....
T Consensus 28 ~e~~~avi~AAee~~sPvIiq~~~ 51 (284)
T PRK09195 28 LETMQVVVETAAELHSPVIIAGTP 51 (284)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCh
Confidence 356677777777777777777653
No 362
>PF02608 Bmp: Basic membrane protein; InterPro: IPR003760 This is a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. All of these proteins are outer membrane proteins and are thus antigenic in nature when possessed by the pathogenic members of the family []. The Bacillus subtilis degR, a positive regulator of the production of degradative enzymes, is also a member of this group [].; GO: 0005886 plasma membrane; PDB: 2HQB_A 3S99_A 2FQW_A 2FQY_A 2FQX_A.
Probab=30.32 E-value=99 Score=28.61 Aligned_cols=74 Identities=11% Similarity=0.074 Sum_probs=43.1
Q ss_pred HHHHHHHHHhcC-CceEEEecCCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEEeccCCCCCHHHHHHHHHhCCCCcEEec
Q 019335 149 GIKQLEQLILKD-GFRAVRFNPYLWPSGQQMTNEVGKAMFSKAGELGVPVGFMCMKGLNLHISEIEELCTEFPSTTVLLD 227 (342)
Q Consensus 149 ~~~eler~~~~~-g~~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH~~~~~~~~~~~l~~l~~~~P~lk~vl~ 227 (342)
..+-+++..++. |+.=...... ...+..+.+.++.+.+.|.-+.+-++. .+...+..++++||+.+|++.
T Consensus 21 ~~~G~~~~~~~~~~i~~~~~e~~------~~~~~~~~~~~~~~~~~g~dlIi~~g~---~~~~~~~~vA~~yPd~~F~~~ 91 (306)
T PF02608_consen 21 AYEGLKRAEKELDGIEIIYVENV------PETDADYEEAIRQLADQGYDLIIGHGF---EYSDALQEVAKEYPDTKFIII 91 (306)
T ss_dssp HHHHHHHHHHHCTTEEEEEEES-------S-TCHHHHHHHHHHHHTT-SEEEEESG---GGHHHHHHHHTC-TTSEEEEE
T ss_pred HHHHHHHHHHHcCCceEEEEecC------CccHHHHHHHHHHHHHcCCCEEEEccH---HHHHHHHHHHHHCCCCEEEEE
Confidence 345566665555 4442222211 114567777878887777666665552 345678899999999999876
Q ss_pred ccCC
Q 019335 228 HLAF 231 (342)
Q Consensus 228 H~G~ 231 (342)
-...
T Consensus 92 d~~~ 95 (306)
T PF02608_consen 92 DGYI 95 (306)
T ss_dssp SS--
T ss_pred ecCc
Confidence 5443
No 363
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=30.16 E-value=1.1e+02 Score=26.04 Aligned_cols=49 Identities=14% Similarity=0.181 Sum_probs=34.1
Q ss_pred cHHHHHHHHHHhhhCCeEEEEeccCCCCCHH-HHHHHHHhCCCCcEEecccCC
Q 019335 180 NEVGKAMFSKAGELGVPVGFMCMKGLNLHIS-EIEELCTEFPSTTVLLDHLAF 231 (342)
Q Consensus 180 ~~~~~~~~~~a~e~~lpv~iH~~~~~~~~~~-~l~~l~~~~P~lk~vl~H~G~ 231 (342)
...+..+++.+++.+++|.+-.+. +..++ ....+.++||+++++- +.|.
T Consensus 34 ~dl~~~l~~~~~~~~~~vfllG~~--~~v~~~~~~~l~~~yP~l~i~g-~~g~ 83 (177)
T TIGR00696 34 PDLMEELCQRAGKEKLPIFLYGGK--PDVLQQLKVKLIKEYPKLKIVG-AFGP 83 (177)
T ss_pred HHHHHHHHHHHHHcCCeEEEECCC--HHHHHHHHHHHHHHCCCCEEEE-ECCC
Confidence 356789999999999999876432 11222 3566778999999775 4443
No 364
>cd06290 PBP1_LacI_like_9 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=29.67 E-value=3.8e+02 Score=23.31 Aligned_cols=128 Identities=15% Similarity=0.072 Sum_probs=61.6
Q ss_pred hHHHHHHhHHCCCceEEEeCCCCCccchHHHHHHHHhCCCcEEE-------EEEcCCCCcchHHHHHHHHHhcCCceEEE
Q 019335 94 VDFLLQCMEEASVDGALIVQPINHKFDHSLVTSVLKKYPSKFVG-------CCLANPAEDVIGIKQLEQLILKDGFRAVR 166 (342)
Q Consensus 94 ~~~ll~~md~~GI~~~v~~~~~~~~~~N~~~~~~~~~~p~r~~g-------~~~i~p~~~~~~~~eler~~~~~g~~Gvk 166 (342)
...+++.+...++++.++.+... ..+.+..+.+.-|=.+++ +..+...+.+ +.+++-+.+.+.|.+=|.
T Consensus 44 ~~~~i~~l~~~~~dgiii~~~~~---~~~~~~~~~~~iPvV~i~~~~~~~~~~~V~~d~~~-a~~~~~~~l~~~g~~~i~ 119 (265)
T cd06290 44 ELEALELLKSRRVDALILLGGDL---PEEEILALAEEIPVLAVGRRVPGPGAASIAVDNFQ-GGYLATQHLIDLGHRRIA 119 (265)
T ss_pred HHHHHHHHHHCCCCEEEEeCCCC---ChHHHHHHhcCCCEEEECCCcCCCCCCEEEECcHH-HHHHHHHHHHHCCCCeEE
Confidence 44778888899999999875321 112222222222311111 0111222222 333333333445665555
Q ss_pred ecCCCCCCCCcCCcHHHHHHHHHHhhhCCeEE----EEeccCCCCCHHHHHHHHHhCCCCcEEec
Q 019335 167 FNPYLWPSGQQMTNEVGKAMFSKAGELGVPVG----FMCMKGLNLHISEIEELCTEFPSTTVLLD 227 (342)
Q Consensus 167 ~~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~----iH~~~~~~~~~~~l~~l~~~~P~lk~vl~ 227 (342)
+.... ........+...+.+.+.++++.+. ++...........+..++++.|+.+.|++
T Consensus 120 ~i~~~--~~~~~~~~r~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~aii~ 182 (265)
T cd06290 120 HITGP--RGHIDARDRLAGYRKALEEAGLEVQPDLIVQGDFEEESGLEAVEELLQRGPDFTAIFA 182 (265)
T ss_pred EEeCc--cccchhhHHHHHHHHHHHHcCCCCCHHHEEecCCCHHHHHHHHHHHHcCCCCCCEEEE
Confidence 44221 1222334677788888888887642 22111100112456777777777776764
No 365
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=29.50 E-value=60 Score=30.84 Aligned_cols=101 Identities=21% Similarity=0.178 Sum_probs=56.7
Q ss_pred CChHHHHHHhHHCCCceEEEeCCCCCccchHHHHHH-HHhCCCc--EE----EEEEc-CCCC-cchHHHHHHHHHhcCCc
Q 019335 92 GHVDFLLQCMEEASVDGALIVQPINHKFDHSLVTSV-LKKYPSK--FV----GCCLA-NPAE-DVIGIKQLEQLILKDGF 162 (342)
Q Consensus 92 ~~~~~ll~~md~~GI~~~v~~~~~~~~~~N~~~~~~-~~~~p~r--~~----g~~~i-~p~~-~~~~~~eler~~~~~g~ 162 (342)
.+++..++...+.|++..++- .. +++. ...+... ++ +-..+ .+.. .......+++.+ ..|.
T Consensus 91 ~dp~~~i~~a~~~g~dAv~~~-~G--------~l~~~~~~~~~~iplIlkln~~t~l~~~~~~~~~l~~sVedAl-rLGA 160 (348)
T PRK09250 91 FDPENIVKLAIEAGCNAVAST-LG--------VLEAVARKYAHKIPFILKLNHNELLSYPNTYDQALTASVEDAL-RLGA 160 (348)
T ss_pred cCHHHHHHHHHhcCCCEEEeC-HH--------HHHhccccccCCCCEEEEeCCCCCCCCCCCCcccceecHHHHH-HCCC
Confidence 577888898888898776643 21 2322 2223221 11 11112 1111 111234566664 7899
Q ss_pred eEEEecCCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEEec
Q 019335 163 RAVRFNPYLWPSGQQMTNEVGKAMFSKAGELGVPVGFMCM 202 (342)
Q Consensus 163 ~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH~~ 202 (342)
.||.++.+.......-.-..+..+.+.|.++|+|+.+++.
T Consensus 161 dAV~~tvy~Gs~~E~~ml~~l~~i~~ea~~~GlPlv~~~Y 200 (348)
T PRK09250 161 VAVGATIYFGSEESRRQIEEISEAFEEAHELGLATVLWSY 200 (348)
T ss_pred CEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCCEEEEec
Confidence 8888876531111111224667888999999999999875
No 366
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=29.47 E-value=1.7e+02 Score=26.99 Aligned_cols=24 Identities=21% Similarity=0.196 Sum_probs=16.2
Q ss_pred cHHHHHHHHHHhhhCCeEEEEecc
Q 019335 180 NEVGKAMFSKAGELGVPVGFMCMK 203 (342)
Q Consensus 180 ~~~~~~~~~~a~e~~lpv~iH~~~ 203 (342)
.+....+++.|++.+.||.+....
T Consensus 28 ~e~~~avi~AAee~~sPvIl~~~~ 51 (286)
T PRK08610 28 LEFTQAILEASQEENAPVILGVSE 51 (286)
T ss_pred HHHHHHHHHHHHHHCCCEEEEcCc
Confidence 356667777777777777776653
No 367
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=29.43 E-value=2.1e+02 Score=25.57 Aligned_cols=61 Identities=15% Similarity=0.089 Sum_probs=44.9
Q ss_pred EEEEcCCCCcchHHHHHHHHHhcCCceEEEecCCCCCCCCcCCcHHHHHHHHHHh-hhCCeEEEEecc
Q 019335 137 GCCLANPAEDVIGIKQLEQLILKDGFRAVRFNPYLWPSGQQMTNEVGKAMFSKAG-ELGVPVGFMCMK 203 (342)
Q Consensus 137 g~~~i~p~~~~~~~~eler~~~~~g~~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~-e~~lpv~iH~~~ 203 (342)
=+..+||.+.+...+.++.+ .+.|.-+|-+... ...+.+..+.+.+++. ..++|+.+-.+.
T Consensus 18 H~tliDP~k~~~~~ei~~~~-~~~GTDaImIGGS-----~gvt~~~~~~~v~~ik~~~~lPvilfP~~ 79 (240)
T COG1646 18 HLTLIDPDKTEEADEIAEAA-AEAGTDAIMIGGS-----DGVTEENVDNVVEAIKERTDLPVILFPGS 79 (240)
T ss_pred EEEEeCcccccccHHHHHHH-HHcCCCEEEECCc-----ccccHHHHHHHHHHHHhhcCCCEEEecCC
Confidence 36788998844354555555 5789999987653 2355678899999999 799999998764
No 368
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=29.41 E-value=1.2e+02 Score=24.49 Aligned_cols=46 Identities=13% Similarity=0.023 Sum_probs=29.4
Q ss_pred CCcHHHHHHHHHHhhhCCeEEEEeccCCCCCHHHHHHHHHhCCCCcEEecccC
Q 019335 178 MTNEVGKAMFSKAGELGVPVGFMCMKGLNLHISEIEELCTEFPSTTVLLDHLA 230 (342)
Q Consensus 178 l~~~~~~~~~~~a~e~~lpv~iH~~~~~~~~~~~l~~l~~~~P~lk~vl~H~G 230 (342)
|....+.++.++|.+.|+-|.+...-+ .=..+++++|+=. +.+--|
T Consensus 41 L~~Dllge~v~a~h~~Girv~ay~~~~------~d~~~~~~HPeW~-~~~~~G 86 (132)
T PF14871_consen 41 LKRDLLGEQVEACHERGIRVPAYFDFS------WDEDAAERHPEWF-VRDADG 86 (132)
T ss_pred CCcCHHHHHHHHHHHCCCEEEEEEeee------cChHHHHhCCcee-eECCCC
Confidence 334567788888888888888776421 2245667888754 333334
No 369
>PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional
Probab=29.28 E-value=5.2e+02 Score=25.80 Aligned_cols=49 Identities=20% Similarity=0.189 Sum_probs=36.3
Q ss_pred HHHHHHHHhcCCceEEEec-CCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEE
Q 019335 150 IKQLEQLILKDGFRAVRFN-PYLWPSGQQMTNEVGKAMFSKAGELGVPVGFM 200 (342)
Q Consensus 150 ~~eler~~~~~g~~Gvk~~-~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH 200 (342)
.++|++.+ ..+.+.|-+. |. .|.|..++.+.+..+.+.|.++|+.|..-
T Consensus 271 ~~~l~~~~-~~~~k~i~i~nP~-NPTG~v~~~~~l~~i~~~a~~~~~~ii~D 320 (517)
T PRK13355 271 IDDIRSKI-TSRTKAIVIINPN-NPTGALYPREVLQQIVDIAREHQLIIFSD 320 (517)
T ss_pred HHHHHHhc-CcCceEEEEECCC-CCCCcCcCHHHHHHHHHHHHHcCcEEEEe
Confidence 46777764 4466766544 43 36688888899999999999999988654
No 370
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=29.26 E-value=4.1e+02 Score=23.57 Aligned_cols=115 Identities=10% Similarity=0.081 Sum_probs=60.6
Q ss_pred CChHHHHHHhHHCCCceEEEeCCCCCccchHHHHHHHHhCCCcEEEEEEcCCCCc------------chHHHHHHHHHhc
Q 019335 92 GHVDFLLQCMEEASVDGALIVQPINHKFDHSLVTSVLKKYPSKFVGCCLANPAED------------VIGIKQLEQLILK 159 (342)
Q Consensus 92 ~~~~~ll~~md~~GI~~~v~~~~~~~~~~N~~~~~~~~~~p~r~~g~~~i~p~~~------------~~~~~eler~~~~ 159 (342)
.+.++..+ +-+.|+++.|+-.. .-.+-+.+.+++++||++++. ++|-.+. -...+.++++ .+
T Consensus 86 rs~e~v~~-~l~~Ga~kvvigt~--a~~~~~~l~~~~~~fg~~ivv--slD~~~g~v~~~gw~~~~~~~~~~~~~~~-~~ 159 (234)
T PRK13587 86 RTKSQIMD-YFAAGINYCIVGTK--GIQDTDWLKEMAHTFPGRIYL--SVDAYGEDIKVNGWEEDTELNLFSFVRQL-SD 159 (234)
T ss_pred CCHHHHHH-HHHCCCCEEEECch--HhcCHHHHHHHHHHcCCCEEE--EEEeeCCEEEecCCcccCCCCHHHHHHHH-HH
Confidence 35555433 33579999875322 122346788888999988542 2332211 0123444444 56
Q ss_pred CCceEEEecCCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEEeccCCCCCHHHHHHHHH
Q 019335 160 DGFRAVRFNPYLWPSGQQMTNEVGKAMFSKAGELGVPVGFMCMKGLNLHISEIEELCT 217 (342)
Q Consensus 160 ~g~~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH~~~~~~~~~~~l~~l~~ 217 (342)
.|+.++-+.... .+| .+..+.++-+-+.++..++||.+..+- ..++++..+++
T Consensus 160 ~g~~~ii~tdi~-~dG-t~~G~~~~li~~l~~~~~ipvi~~GGi---~s~edi~~l~~ 212 (234)
T PRK13587 160 IPLGGIIYTDIA-KDG-KMSGPNFELTGQLVKATTIPVIASGGI---RHQQDIQRLAS 212 (234)
T ss_pred cCCCEEEEeccc-CcC-CCCccCHHHHHHHHHhCCCCEEEeCCC---CCHHHHHHHHH
Confidence 788777665432 122 222233333333344467888766442 35666776664
No 371
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=29.22 E-value=4.2e+02 Score=23.76 Aligned_cols=76 Identities=12% Similarity=0.039 Sum_probs=38.9
Q ss_pred HHHHHHHHHhcCCceEEEecCCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEEeccCC-CCCHHHH----HHHHHhCCCCc
Q 019335 149 GIKQLEQLILKDGFRAVRFNPYLWPSGQQMTNEVGKAMFSKAGELGVPVGFMCMKGL-NLHISEI----EELCTEFPSTT 223 (342)
Q Consensus 149 ~~~eler~~~~~g~~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH~~~~~-~~~~~~l----~~l~~~~P~lk 223 (342)
..+.++. +++.|+. +.+.... ....+.+.+..+.+.+.+.|.-..-- .+.. ...+.++ ..+.+++|.++
T Consensus 114 ~~~~i~~-ak~~G~~-v~~~~~~---~~~~~~~~~~~~~~~~~~~G~d~i~l-~DT~G~~~P~~v~~lv~~l~~~~~~~~ 187 (263)
T cd07943 114 SEQHIGA-ARKLGMD-VVGFLMM---SHMASPEELAEQAKLMESYGADCVYV-TDSAGAMLPDDVRERVRALREALDPTP 187 (263)
T ss_pred HHHHHHH-HHHCCCe-EEEEEEe---ccCCCHHHHHHHHHHHHHcCCCEEEE-cCCCCCcCHHHHHHHHHHHHHhCCCce
Confidence 3333433 4666753 3333221 23345567888889999988776433 3322 1233333 33444566534
Q ss_pred EEecccCC
Q 019335 224 VLLDHLAF 231 (342)
Q Consensus 224 ~vl~H~G~ 231 (342)
+-+ |+-.
T Consensus 188 l~~-H~Hn 194 (263)
T cd07943 188 VGF-HGHN 194 (263)
T ss_pred EEE-EecC
Confidence 444 7654
No 372
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=28.92 E-value=2e+02 Score=23.87 Aligned_cols=54 Identities=11% Similarity=0.209 Sum_probs=40.3
Q ss_pred cCCcHHHHHHHHHHhhhCCeEEEEeccCCCCCHHHHHHHHHhCC--CCcEEecccCC
Q 019335 177 QMTNEVGKAMFSKAGELGVPVGFMCMKGLNLHISEIEELCTEFP--STTVLLDHLAF 231 (342)
Q Consensus 177 ~l~~~~~~~~~~~a~e~~lpv~iH~~~~~~~~~~~l~~l~~~~P--~lk~vl~H~G~ 231 (342)
.-|-+..++..+.++++|++..++.... ...+..+.++++.+. +.+++|+=.|.
T Consensus 10 ~SD~~~~~~a~~~L~~~gi~~~~~V~sa-HR~p~~l~~~~~~~~~~~~~viIa~AG~ 65 (150)
T PF00731_consen 10 TSDLPIAEEAAKTLEEFGIPYEVRVASA-HRTPERLLEFVKEYEARGADVIIAVAGM 65 (150)
T ss_dssp GGGHHHHHHHHHHHHHTT-EEEEEE--T-TTSHHHHHHHHHHTTTTTESEEEEEEES
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEEec-cCCHHHHHHHHHHhccCCCEEEEEECCC
Confidence 3356788999999999999999987533 456788999998885 47788877776
No 373
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=28.75 E-value=4e+02 Score=23.30 Aligned_cols=128 Identities=13% Similarity=0.058 Sum_probs=63.7
Q ss_pred hHHHHHHhHHCCCceEEEeCCCCCccchHHHHHHHHhCCCcEEEEE--------EcCCCCcchHHHHHHHHHhcCCceEE
Q 019335 94 VDFLLQCMEEASVDGALIVQPINHKFDHSLVTSVLKKYPSKFVGCC--------LANPAEDVIGIKQLEQLILKDGFRAV 165 (342)
Q Consensus 94 ~~~ll~~md~~GI~~~v~~~~~~~~~~N~~~~~~~~~~p~r~~g~~--------~i~p~~~~~~~~eler~~~~~g~~Gv 165 (342)
...+++.|.+.+|++.++++.. .+.+.+.+.+++.+-.++.+. .|..++.. +.+.+-+.+.+.|.+=+
T Consensus 44 ~~~~i~~l~~~~vdgii~~~~~---~~~~~~~~~~~~~~ipvV~i~~~~~~~~~~V~~d~~~-~g~~a~~~l~~~G~~~i 119 (269)
T cd06281 44 ELEILRSFEQRRMDGIIIAPGD---ERDPELVDALASLDLPIVLLDRDMGGGADAVLFDHAA-GMRQAVEYLISLGHRRI 119 (269)
T ss_pred HHHHHHHHHHcCCCEEEEecCC---CCcHHHHHHHHhCCCCEEEEecccCCCCCEEEECcHH-HHHHHHHHHHHCCCcEE
Confidence 4567778888899999887532 122334444444422233221 11122222 22333333334566555
Q ss_pred EecCCCCCCCCcCCcHHHHHHHHHHhhhCCeE----EEEeccCCCCCHHHHHHHHHhCCCCcEEecc
Q 019335 166 RFNPYLWPSGQQMTNEVGKAMFSKAGELGVPV----GFMCMKGLNLHISEIEELCTEFPSTTVLLDH 228 (342)
Q Consensus 166 k~~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv----~iH~~~~~~~~~~~l~~l~~~~P~lk~vl~H 228 (342)
.+.... .+......+...+.+.++++|+.+ ...... .......+..++++.|+...+++.
T Consensus 120 ~~l~~~--~~~~~~~~R~~Gf~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~ai~~~ 183 (269)
T cd06281 120 ALVGGG--SNTRPGRERLEGYKAAFAAAGLPPDPALVRLSTP-AASGFDATRALLALPDRPTAIIAG 183 (269)
T ss_pred EEecCc--cccccHHHHHHHHHHHHHHcCCCCCHHHeecCcH-HHHHHHHHHHHHcCCCCCcEEEEc
Confidence 544321 122334457778888888888754 111110 011123466677667777777754
No 374
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=28.74 E-value=4.6e+02 Score=24.58 Aligned_cols=114 Identities=16% Similarity=0.145 Sum_probs=57.5
Q ss_pred HHHHHhHHCCCceEEEeCCCCCccchHHHHHHHHhCCCcEEEEEEcCCC-------------CcchHHHHHHHHHhcCCc
Q 019335 96 FLLQCMEEASVDGALIVQPINHKFDHSLVTSVLKKYPSKFVGCCLANPA-------------EDVIGIKQLEQLILKDGF 162 (342)
Q Consensus 96 ~ll~~md~~GI~~~v~~~~~~~~~~N~~~~~~~~~~p~r~~g~~~i~p~-------------~~~~~~~eler~~~~~g~ 162 (342)
.+.+..++.-=..+|+... .....-..+.+.+ ++|+|++|.-.+||- ...+.++.+.++.+..|.
T Consensus 100 ~lf~~l~~~~~~~aIlaSn-TS~l~~s~la~~~-~~p~R~~g~HffnP~~~~pLVEVv~g~~T~~e~~~~~~~f~~~lGk 177 (321)
T PRK07066 100 ELHERISRAAKPDAIIASS-TSGLLPTDFYARA-THPERCVVGHPFNPVYLLPLVEVLGGERTAPEAVDAAMGIYRALGM 177 (321)
T ss_pred HHHHHHHHhCCCCeEEEEC-CCccCHHHHHHhc-CCcccEEEEecCCccccCceEEEeCCCCCCHHHHHHHHHHHHHcCC
Confidence 4445555433333444322 2233333444433 688999988776653 123466677777777788
Q ss_pred eEEEecCCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEEeccCCCCCHHHHHHHHHhCCCC
Q 019335 163 RAVRFNPYLWPSGQQMTNEVGKAMFSKAGELGVPVGFMCMKGLNLHISEIEELCTEFPST 222 (342)
Q Consensus 163 ~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH~~~~~~~~~~~l~~l~~~~P~l 222 (342)
+.|.+.-.. + | .+.+..+.+++..|-.+ ..+| -..+++++..++.=+++
T Consensus 178 ~pV~v~kd~-p-G-Fi~NRl~~a~~~EA~~l-------v~eG-vas~edID~a~~~g~g~ 226 (321)
T PRK07066 178 RPLHVRKEV-P-G-FIADRLLEALWREALHL-------VNEG-VATTGEIDDAIRFGAGI 226 (321)
T ss_pred EeEecCCCC-c-c-HHHHHHHHHHHHHHHHH-------HHhC-CCCHHHHHHHHHhCCCC
Confidence 777764221 1 2 23334444444443221 0011 12466788877644444
No 375
>TIGR03025 EPS_sugtrans exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase. Certain closely related transferase enzymes such as Sinorhizobium ExoY and Lactococcus EpsD lack the N-terminal domain and are not found by this model.
Probab=28.57 E-value=4.2e+02 Score=25.85 Aligned_cols=86 Identities=14% Similarity=0.092 Sum_probs=51.7
Q ss_pred ceEEEeCCCCCccchHHHHHHHHhCCC-cEEEEEEcCCCCcc----------hHHHHHHHHHhcCCceEEEecCCCCCCC
Q 019335 107 DGALIVQPINHKFDHSLVTSVLKKYPS-KFVGCCLANPAEDV----------IGIKQLEQLILKDGFRAVRFNPYLWPSG 175 (342)
Q Consensus 107 ~~~v~~~~~~~~~~N~~~~~~~~~~p~-r~~g~~~i~p~~~~----------~~~~eler~~~~~g~~Gvk~~~~~~~~g 175 (342)
.++++++.+ ..-+.+++..+++|+ .+..++.++..... ...+++.+.+++.++..|-+...
T Consensus 126 ~rvLIvGag---~~a~~l~~~L~~~~~~g~~vvG~idd~~~~~~~i~g~pVlg~~~~l~~~i~~~~id~ViIa~p----- 197 (445)
T TIGR03025 126 RRVLIVGTG---EAARELAAALSRNPDLGYRVVGFVDDRPSDRVEVAGLPVLGKLDDLVELVRAHRVDEVIIALP----- 197 (445)
T ss_pred CcEEEEECC---HHHHHHHHHHhhCccCCeEEEEEEeCCcccccccCCCcccCCHHHHHHHHHhCCCCEEEEecC-----
Confidence 456666542 223455566665554 34444444432111 12467888888888887766532
Q ss_pred CcCCcHHHHHHHHHHhhhCCeEEEEe
Q 019335 176 QQMTNEVGKAMFSKAGELGVPVGFMC 201 (342)
Q Consensus 176 ~~l~~~~~~~~~~~a~e~~lpv~iH~ 201 (342)
..+.+....+++.|+++|+.|.+-.
T Consensus 198 -~~~~~~~~~ll~~~~~~gv~V~~vP 222 (445)
T TIGR03025 198 -LSEEARILELLLQLRDLGVDVRLVP 222 (445)
T ss_pred -cccHHHHHHHHHHHHhcCCEEEEeC
Confidence 2345677899999999999886654
No 376
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=28.55 E-value=93 Score=26.89 Aligned_cols=36 Identities=14% Similarity=-0.036 Sum_probs=26.4
Q ss_pred cHHHHHHHHHHhhhCCeEEEEeccCCCCCHHHHHHHHHhC
Q 019335 180 NEVGKAMFSKAGELGVPVGFMCMKGLNLHISEIEELCTEF 219 (342)
Q Consensus 180 ~~~~~~~~~~a~e~~lpv~iH~~~~~~~~~~~l~~l~~~~ 219 (342)
||.+.++++.|.|+++|+.+-.+. .-..+..+++++
T Consensus 75 dp~fKef~e~ike~di~fiVvSsG----m~~fI~~lfe~i 110 (220)
T COG4359 75 DPGFKEFVEWIKEHDIPFIVVSSG----MDPFIYPLFEGI 110 (220)
T ss_pred CccHHHHHHHHHHcCCCEEEEeCC----CchHHHHHHHhh
Confidence 577899999999999999887542 223456666655
No 377
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=28.51 E-value=5.1e+02 Score=24.47 Aligned_cols=115 Identities=11% Similarity=0.121 Sum_probs=57.5
Q ss_pred CChHHHHHHh---HHCCCceEEEeCCCCCccchHHHHHHHH----hCCCcEEEEEEcCCC--------CcchHHHHHHHH
Q 019335 92 GHVDFLLQCM---EEASVDGALIVQPINHKFDHSLVTSVLK----KYPSKFVGCCLANPA--------EDVIGIKQLEQL 156 (342)
Q Consensus 92 ~~~~~ll~~m---d~~GI~~~v~~~~~~~~~~N~~~~~~~~----~~p~r~~g~~~i~p~--------~~~~~~~eler~ 156 (342)
-+.|++++.+ .+.|++...+..........+++.++++ .+|+- . .+.+.|. ......+.++++
T Consensus 79 l~~eeI~~~a~~~~~~G~~~v~l~~G~~p~~~~~~~~e~i~~Ik~~~p~i-~-i~~~~~~ei~~~~~~~g~~~~e~l~~L 156 (351)
T TIGR03700 79 MSLEEIVARVKEAYAPGATEVHIVGGLHPNLPFEWYLDMIRTLKEAYPDL-H-VKAFTAVEIHHFSKISGLPTEEVLDEL 156 (351)
T ss_pred CCHHHHHHHHHHHHHCCCcEEEEecCCCCCCCHHHHHHHHHHHHHHCCCc-e-EEeCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 3667766644 4589998887743211222344444433 45652 2 2222211 011122346666
Q ss_pred HhcCCceEEE-----ec-CCCCC--CCCcCCcHHHHHHHHHHhhhCCeEEEEeccCCCCCH
Q 019335 157 ILKDGFRAVR-----FN-PYLWP--SGQQMTNEVGKAMFSKAGELGVPVGFMCMKGLNLHI 209 (342)
Q Consensus 157 ~~~~g~~Gvk-----~~-~~~~~--~g~~l~~~~~~~~~~~a~e~~lpv~iH~~~~~~~~~ 209 (342)
++.|+..+- .. ..... ........++....+.|.++|+++..+..-|.....
T Consensus 157 -keAGld~~~~~g~E~~~~~v~~~i~~~~~~~~~~l~~i~~a~~~Gi~~~sg~i~GlgEt~ 216 (351)
T TIGR03700 157 -KEAGLDSMPGGGAEIFAEEVRQQICPEKISAERWLEIHRTAHELGLKTNATMLYGHIETP 216 (351)
T ss_pred -HHcCCCcCCCCcccccCHHHHhhcCCCCCCHHHHHHHHHHHHHcCCCcceEEEeeCCCCH
Confidence 455664332 11 00000 011234567778999999999999777554443333
No 378
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=28.50 E-value=2.3e+02 Score=28.41 Aligned_cols=105 Identities=10% Similarity=0.029 Sum_probs=56.4
Q ss_pred HHHHHhCCCcEEEEEEc--CCCCcchHHHHHHHHHhcC--CceEEEecCCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEE
Q 019335 125 TSVLKKYPSKFVGCCLA--NPAEDVIGIKQLEQLILKD--GFRAVRFNPYLWPSGQQMTNEVGKAMFSKAGELGVPVGFM 200 (342)
Q Consensus 125 ~~~~~~~p~r~~g~~~i--~p~~~~~~~~eler~~~~~--g~~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH 200 (342)
.+.-+..|.+++.++.+ ++......-+++++++... |++-|.+.... ....+..+....+++.++.++..|..-
T Consensus 257 ~d~~rp~~p~v~~vGgi~~~~~~~~~l~~~l~~fl~~~~~g~V~vS~GS~~--~~~~~~~~~~~~~l~a~~~l~~~viw~ 334 (507)
T PHA03392 257 FDNNRPVPPSVQYLGGLHLHKKPPQPLDDYLEEFLNNSTNGVVYVSFGSSI--DTNDMDNEFLQMLLRTFKKLPYNVLWK 334 (507)
T ss_pred ccCCCCCCCCeeeecccccCCCCCCCCCHHHHHHHhcCCCcEEEEECCCCC--cCCCCCHHHHHHHHHHHHhCCCeEEEE
Confidence 34444555555544443 2222111225777776543 33333333221 112456678899999999999887655
Q ss_pred eccCC-----CCCHH-----HHHHHHHhCCCCcEEecccCCC
Q 019335 201 CMKGL-----NLHIS-----EIEELCTEFPSTTVLLDHLAFC 232 (342)
Q Consensus 201 ~~~~~-----~~~~~-----~l~~l~~~~P~lk~vl~H~G~~ 232 (342)
..... +..+. -...++ .+|++++++.|+|..
T Consensus 335 ~~~~~~~~~~p~Nv~i~~w~Pq~~lL-~hp~v~~fItHGG~~ 375 (507)
T PHA03392 335 YDGEVEAINLPANVLTQKWFPQRAVL-KHKNVKAFVTQGGVQ 375 (507)
T ss_pred ECCCcCcccCCCceEEecCCCHHHHh-cCCCCCEEEecCCcc
Confidence 43211 11110 112333 569999999999974
No 379
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=28.48 E-value=5.3e+02 Score=25.29 Aligned_cols=100 Identities=16% Similarity=0.110 Sum_probs=56.4
Q ss_pred HHHHHHhHHCCCceEEEeCCCCCccchHHHHHHHH-hCCCc-EEEEEEcCCCCcchHHHHHHHHHhcCCceEEEecCCCC
Q 019335 95 DFLLQCMEEASVDGALIVQPINHKFDHSLVTSVLK-KYPSK-FVGCCLANPAEDVIGIKQLEQLILKDGFRAVRFNPYLW 172 (342)
Q Consensus 95 ~~ll~~md~~GI~~~v~~~~~~~~~~N~~~~~~~~-~~p~r-~~g~~~i~p~~~~~~~~eler~~~~~g~~Gvk~~~~~~ 172 (342)
.+.++.+-++|++..|+-...-....--.++++.+ +||+. ++|--++. .++.+.++ ..|+-|+|+.....
T Consensus 253 K~rl~ll~~aGvdvviLDSSqGnS~~qiemik~iK~~yP~l~ViaGNVVT-------~~qa~nLI-~aGaDgLrVGMGsG 324 (503)
T KOG2550|consen 253 KERLDLLVQAGVDVVILDSSQGNSIYQLEMIKYIKETYPDLQIIAGNVVT-------KEQAANLI-AAGADGLRVGMGSG 324 (503)
T ss_pred hHHHHHhhhcCCcEEEEecCCCcchhHHHHHHHHHhhCCCceeeccceee-------HHHHHHHH-HccCceeEeccccC
Confidence 45567778999999887543212222233555554 68962 22211111 13444443 56888888764320
Q ss_pred ----CC----CCcCCcHHHHHHHHHHhhhCCeEEEEec
Q 019335 173 ----PS----GQQMTNEVGKAMFSKAGELGVPVGFMCM 202 (342)
Q Consensus 173 ----~~----g~~l~~~~~~~~~~~a~e~~lpv~iH~~ 202 (342)
.+ -.+.+--...++-++|..+|+||....+
T Consensus 325 SiCiTqevma~GrpQ~TAVy~va~~A~q~gvpviADGG 362 (503)
T KOG2550|consen 325 SICITQKVMACGRPQGTAVYKVAEFANQFGVPCIADGG 362 (503)
T ss_pred ceeeeceeeeccCCcccchhhHHHHHHhcCCceeecCC
Confidence 00 0123344677888889999999976544
No 380
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=28.46 E-value=6.4e+02 Score=25.61 Aligned_cols=46 Identities=13% Similarity=0.088 Sum_probs=26.2
Q ss_pred HHHhHHCCCceEEEeCCCCC----------ccchHHHHHHHHhCCCcEEEEEEcCCC
Q 019335 98 LQCMEEASVDGALIVQPINH----------KFDHSLVTSVLKKYPSKFVGCCLANPA 144 (342)
Q Consensus 98 l~~md~~GI~~~v~~~~~~~----------~~~N~~~~~~~~~~p~r~~g~~~i~p~ 144 (342)
++.+=+.|+++.++-..... ...-+.+.+++++|+++-+ ++.||..
T Consensus 340 ~~~~l~~GadkV~i~s~Av~~~~~~~~~~~~~~p~~i~~~~~~fg~q~i-vvsiD~k 395 (538)
T PLN02617 340 ASEYFRSGADKISIGSDAVYAAEEYIASGVKTGKTSIEQISRVYGNQAV-VVSIDPR 395 (538)
T ss_pred HHHHHHcCCCEEEEChHHHhChhhhhccccccCHHHHHHHHHHcCCceE-EEEEecC
Confidence 44555678888887542111 1123677788888876523 3455554
No 381
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=28.28 E-value=2.4e+02 Score=27.47 Aligned_cols=24 Identities=13% Similarity=0.220 Sum_probs=12.1
Q ss_pred CcCCcHHHHHHHHHHhhhCCeEEE
Q 019335 176 QQMTNEVGKAMFSKAGELGVPVGF 199 (342)
Q Consensus 176 ~~l~~~~~~~~~~~a~e~~lpv~i 199 (342)
..+..+.+.++++.+.+.++++.+
T Consensus 84 epl~~~~l~eLl~~lk~~gi~taI 107 (404)
T TIGR03278 84 DVSCYPELEELTKGLSDLGLPIHL 107 (404)
T ss_pred ccccCHHHHHHHHHHHhCCCCEEE
Confidence 344445555555555555555433
No 382
>PRK07366 succinyldiaminopimelate transaminase; Validated
Probab=28.20 E-value=5.2e+02 Score=24.43 Aligned_cols=49 Identities=4% Similarity=-0.115 Sum_probs=32.5
Q ss_pred HHHHHHHhcCCceEEEecCCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEE
Q 019335 151 KQLEQLILKDGFRAVRFNPYLWPSGQQMTNEVGKAMFSKAGELGVPVGFM 200 (342)
Q Consensus 151 ~eler~~~~~g~~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH 200 (342)
+++++.+ ..+.+.|-+.....|.|..++.++++.+.+.|+++|+.|..-
T Consensus 156 ~~l~~~~-~~~~k~i~l~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~D 204 (388)
T PRK07366 156 ADIPTEV-LAQARLMVLSYPHNPTTAIAPLSFFQEAVAFCQQHDLVLVHD 204 (388)
T ss_pred HHHHHhh-cccceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCeEEEEe
Confidence 4554432 234555554432246688888889999999999999887643
No 383
>PF13727 CoA_binding_3: CoA-binding domain; PDB: 3NKL_B.
Probab=28.20 E-value=1.6e+02 Score=23.88 Aligned_cols=72 Identities=18% Similarity=0.252 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCC---cEEEEEEcCCCCcch---------HHHHHHHHHhcCCceEEEecCCCCCCCCcCCcHHHHHHHHH
Q 019335 122 SLVTSVLKKYPS---KFVGCCLANPAEDVI---------GIKQLEQLILKDGFRAVRFNPYLWPSGQQMTNEVGKAMFSK 189 (342)
Q Consensus 122 ~~~~~~~~~~p~---r~~g~~~i~p~~~~~---------~~~eler~~~~~g~~Gvk~~~~~~~~g~~l~~~~~~~~~~~ 189 (342)
+.+.+..++.|+ +++|+..-++..... ..+++.+.+++.++.-|-+.. ..-..+...++.+.
T Consensus 90 ~~~~~~l~~~~~~g~~vvg~~d~~~~~~~~~~~~~~~lg~~~~l~~~~~~~~id~v~ial------~~~~~~~i~~ii~~ 163 (175)
T PF13727_consen 90 RELAEALRSNPRLGYRVVGFVDDDPSDRGPEIDGVPVLGDLDDLPELVREHDIDEVIIAL------PWSEEEQIKRIIEE 163 (175)
T ss_dssp HHHHHHHHH--SSSEEEEEEE-S-GGGTT-EETTEEEE--GGGHHHHHHHHT--EEEE--------TTS-HHHHHHHHHH
T ss_pred HHHHHHHHhhhhcCceEEEEEeCchhhccCcccCceeEcCHHHHHHHHHhCCCCEEEEEc------CccCHHHHHHHHHH
Q ss_pred HhhhCCeEEE
Q 019335 190 AGELGVPVGF 199 (342)
Q Consensus 190 a~e~~lpv~i 199 (342)
|+++++.|.+
T Consensus 164 ~~~~~v~v~~ 173 (175)
T PF13727_consen 164 LENHGVRVRV 173 (175)
T ss_dssp HHTTT-EEEE
T ss_pred HHhCCCEEEE
No 384
>PRK02308 uvsE putative UV damage endonuclease; Provisional
Probab=28.01 E-value=3e+02 Score=25.61 Aligned_cols=120 Identities=12% Similarity=0.163 Sum_probs=65.8
Q ss_pred HHHHHHHHHhcCCceEEEecCCCCCCCCcC-------CcHHHHHHHHHHhhhCCe----EEEEeccCCCCC------HH-
Q 019335 149 GIKQLEQLILKDGFRAVRFNPYLWPSGQQM-------TNEVGKAMFSKAGELGVP----VGFMCMKGLNLH------IS- 210 (342)
Q Consensus 149 ~~~eler~~~~~g~~Gvk~~~~~~~~g~~l-------~~~~~~~~~~~a~e~~lp----v~iH~~~~~~~~------~~- 210 (342)
.++++.+.+++.|+ -+.+|+.+.-.-... .-..+..-.+.|..+|+. |.+|+| ... +.
T Consensus 92 ~~~~~g~~~~~~~i-rls~Hp~y~inL~S~~~ev~e~Si~~L~~~~~~~~~lG~~~~~~vViHpG---~~~~~ke~al~r 167 (303)
T PRK02308 92 ELREIGEFIKEHNI-RLSFHPDQFVVLNSPKPEVVENSIKDLEYHAKLLDLMGIDDSSKINIHVG---GAYGDKEKALER 167 (303)
T ss_pred HHHHHHHHHHHcCC-CeeccChhhhcCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCC---ccCCCHHHHHHH
Confidence 45666667667777 366665532100011 123566678888889988 778887 221 11
Q ss_pred ---HHHHHHHhCCCCcEEecccCCCCCCCCchhhHhHHHHhccc---CCCcEEEecCcccccccCCCCCCCchhHHHHHH
Q 019335 211 ---EIEELCTEFPSTTVLLDHLAFCKPPSNDEESLAFSNLLKLS---RFPQVYVKFSALFRVSRMPFPYQDLSSPLSQVV 284 (342)
Q Consensus 211 ---~l~~l~~~~P~lk~vl~H~G~~~p~~~~~~~~~~~~~~~l~---~~~Nvy~~~S~~~~~~~~~~~~~~~~~~l~~~i 284 (342)
.+..+.+.. +.++++...++.+ ..+++..+. ..| +-+|+.-.+.. ++.. ...+.+..++
T Consensus 168 ~~~~l~~l~~~~-~~~L~LEN~~~~~---------t~~ell~I~e~~~ip-v~~D~hH~~~~---g~~l-~~~e~~~~~~ 232 (303)
T PRK02308 168 FIENIKKLPESI-KKRLTLENDDKTY---------TVEELLYICEKLGIP-VVFDYHHHMCN---PDGE-SLEEALELAF 232 (303)
T ss_pred HHHHHHHhhHHh-CCEEEEeeCCCCC---------CHHHHHHHHHHcCCC-EEEeHHhhhhc---CCCC-ChHHHHHHHH
Confidence 233444444 5888888888731 123333332 345 88886644321 1111 2335677777
Q ss_pred Hhc
Q 019335 285 SSF 287 (342)
Q Consensus 285 ~~~ 287 (342)
+.+
T Consensus 233 ~tw 235 (303)
T PRK02308 233 ETW 235 (303)
T ss_pred HHh
Confidence 776
No 385
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=28.00 E-value=1.5e+02 Score=24.77 Aligned_cols=63 Identities=10% Similarity=0.066 Sum_probs=27.3
Q ss_pred HHhcCCceEEEecCCCCCC-CCcCCcHHHHHHHHH-HhhhCCeEEEEeccCCCCCHHHHHHHHHhC
Q 019335 156 LILKDGFRAVRFNPYLWPS-GQQMTNEVGKAMFSK-AGELGVPVGFMCMKGLNLHISEIEELCTEF 219 (342)
Q Consensus 156 ~~~~~g~~Gvk~~~~~~~~-g~~l~~~~~~~~~~~-a~e~~lpv~iH~~~~~~~~~~~l~~l~~~~ 219 (342)
.+++.|++-+.+....... ...+.++.....++. +...+-||++||..|. ..-..+...++++
T Consensus 51 f~~~~~I~l~~~~~~~~~~~~~~~~~~~v~~aL~~ild~~n~PvLiHC~~G~-~rTG~vvg~lRk~ 115 (164)
T PF03162_consen 51 FAEENGIKLIHIPMSSSKDPWVPISEEQVAEALEIILDPRNYPVLIHCNHGK-DRTGLVVGCLRKL 115 (164)
T ss_dssp HHHHTT-EEEE-------GGG----HHHHHHHHHHHH-GGG-SEEEE-SSSS-SHHHHHHHHHHHH
T ss_pred HHhhcCceEEEeccccccCccccCCHHHHHHHHHHHhCCCCCCEEEEeCCCC-cchhhHHHHHHHH
Confidence 3355565554443321110 123556677777775 4446889999997652 1123455555544
No 386
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=27.98 E-value=5e+02 Score=24.21 Aligned_cols=126 Identities=14% Similarity=0.092 Sum_probs=71.2
Q ss_pred hHHHHHHhHHCCCceEEEeCCCCCccchHHHHHHHHhCCCcEEEEE---------EcCCCCcchHHHHHHHHHhcCCceE
Q 019335 94 VDFLLQCMEEASVDGALIVQPINHKFDHSLVTSVLKKYPSKFVGCC---------LANPAEDVIGIKQLEQLILKDGFRA 164 (342)
Q Consensus 94 ~~~ll~~md~~GI~~~v~~~~~~~~~~N~~~~~~~~~~p~r~~g~~---------~i~p~~~~~~~~eler~~~~~g~~G 164 (342)
.+.+++.+.+.+|++.|+.+. ..|+...+.+.+..-.++-+. .|..++.. +..++-+.+-+.|.+=
T Consensus 103 e~~~~~~l~~~~vdGiIi~~~----~~~~~~~~~l~~~~~P~V~i~~~~~~~~~~~V~~Dn~~-~~~~a~~~L~~~G~~~ 177 (333)
T COG1609 103 EREYLETLLQKRVDGLILLGE----RPNDSLLELLAAAGIPVVVIDRSPPGLGVPSVGIDNFA-GAYLATEHLIELGHRR 177 (333)
T ss_pred HHHHHHHHHHcCCCEEEEecC----CCCHHHHHHHHhcCCCEEEEeCCCccCCCCEEEEChHH-HHHHHHHHHHHCCCce
Confidence 456788899999999998862 235556656655432233222 12222222 3444444445778776
Q ss_pred EEecCCCCCCCCcCCcHHHHHHHHHHhhhCCeE-EEEeccCC---CCCHHHHHHHHHhCCC-CcEEe
Q 019335 165 VRFNPYLWPSGQQMTNEVGKAMFSKAGELGVPV-GFMCMKGL---NLHISEIEELCTEFPS-TTVLL 226 (342)
Q Consensus 165 vk~~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv-~iH~~~~~---~~~~~~l~~l~~~~P~-lk~vl 226 (342)
|.+.... ........++..+.+.++++|+++ ..+...+. ......+..++...+. ..-|+
T Consensus 178 i~~i~~~--~~~~~~~~R~~Gf~~al~~~~~~~~~~~i~~~~~~~~~g~~~~~~ll~~~~~~ptAif 242 (333)
T COG1609 178 IAFIGGP--LDSSASRERLEGYRAALREAGLPINPEWIVEGDFSEESGYEAAERLLARGEPRPTAIF 242 (333)
T ss_pred EEEEeCC--CccccHhHHHHHHHHHHHHCCCCCCcceEEecCCChHHHHHHHHHHHhcCCCCCcEEE
Confidence 6655331 112334678999999999999985 33332211 1223456777766644 33343
No 387
>COG0685 MetF 5,10-methylenetetrahydrofolate reductase [Amino acid transport and metabolism]
Probab=27.85 E-value=4.9e+02 Score=24.02 Aligned_cols=122 Identities=10% Similarity=-0.001 Sum_probs=66.3
Q ss_pred hHHHHHHhHHCCCceEEEeCCCC-----Cc---cchHHHHHHHHhCCCc-EEEEEEcCCCCc-c--hHHHHHHHHHhcCC
Q 019335 94 VDFLLQCMEEASVDGALIVQPIN-----HK---FDHSLVTSVLKKYPSK-FVGCCLANPAED-V--IGIKQLEQLILKDG 161 (342)
Q Consensus 94 ~~~ll~~md~~GI~~~v~~~~~~-----~~---~~N~~~~~~~~~~p~r-~~g~~~i~p~~~-~--~~~~eler~~~~~g 161 (342)
.+..+....+.||...+.+.... .+ .+...++++.+++.+. |...+..+|... + +...++.++.++..
T Consensus 94 i~~~l~~~~~~Gi~~ilaLrGDpp~g~~~~~~~~~s~dLv~lik~~~~~~f~i~~A~~Pe~h~~s~~~~~d~~~lkrKv~ 173 (291)
T COG0685 94 IISILKGAAALGIRNILALRGDPPAGDKPGGKDLYSVDLVELIKKMRGGIFDIGVAAYPEGHPESKDVKEDIKRLKRKVD 173 (291)
T ss_pred HHHHHHHHHHhCCceEEEecCCCCCCCCCCccccCHHHHHHHHHHhcCCeEEEEEEeCCCCCccchhhHHHHHHHHHHHh
Confidence 45556677789999999885322 11 2445788888865443 433334455432 1 12334444422111
Q ss_pred ceEEEecCCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEEeccCCCCCHHHHHHHHHhCC
Q 019335 162 FRAVRFNPYLWPSGQQMTNEVGKAMFSKAGELGVPVGFMCMKGLNLHISEIEELCTEFP 220 (342)
Q Consensus 162 ~~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH~~~~~~~~~~~l~~l~~~~P 220 (342)
.|..+... -...+.+.+..+.+++.+.|+-+-||.|--+-.....+..+....+
T Consensus 174 -aGAd~~iT----Q~~fd~e~~~~~~~~~~~~g~~~pI~~Gimpi~~~~~~~~~~~~~~ 227 (291)
T COG0685 174 -AGADFFIT----QFFFDVEAFERFAERVRAAGIDIPIIPGIMPVTNFKQLLRFASLCG 227 (291)
T ss_pred -cchHHHHH----HHccCHHHHHHHHHHHHhcCCCCCeeecccccccHHHHHHHHHhcC
Confidence 23322211 1245678999999999998766556665322223345555555554
No 388
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=27.82 E-value=3.9e+02 Score=24.36 Aligned_cols=49 Identities=14% Similarity=0.120 Sum_probs=30.2
Q ss_pred HHHHHHhcCCceEEEecCCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEEec
Q 019335 152 QLEQLILKDGFRAVRFNPYLWPSGQQMTNEVGKAMFSKAGELGVPVGFMCM 202 (342)
Q Consensus 152 eler~~~~~g~~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH~~ 202 (342)
.++++ .+.|+.||-+.... .....++.++-..+.+.+.+..-.|.++++
T Consensus 25 li~~l-~~~Gv~Gl~~~Gst-GE~~~Lt~eEr~~l~~~~~~~~~~vi~gvg 73 (279)
T cd00953 25 HCENL-ISKGIDYVFVAGTT-GLGPSLSFQEKLELLKAYSDITDKVIFQVG 73 (279)
T ss_pred HHHHH-HHcCCcEEEEcccC-CCcccCCHHHHHHHHHHHHHHcCCEEEEeC
Confidence 34444 46788888776543 123467777777777766664335677765
No 389
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=27.81 E-value=4.1e+02 Score=23.18 Aligned_cols=69 Identities=12% Similarity=0.071 Sum_probs=39.4
Q ss_pred hcCCceEEEecCCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEEeccCCCCCHH----HHHHHHHhCCCCcEEecccCC
Q 019335 158 LKDGFRAVRFNPYLWPSGQQMTNEVGKAMFSKAGELGVPVGFMCMKGLNLHIS----EIEELCTEFPSTTVLLDHLAF 231 (342)
Q Consensus 158 ~~~g~~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH~~~~~~~~~~----~l~~l~~~~P~lk~vl~H~G~ 231 (342)
++.|..- .+.... ....+.+.+.++.+.+.++|.-....+-......+. .+..+.+++|++.+-+ |+-.
T Consensus 118 k~~g~~v-~~~~~~---~~~~~~~~~~~~~~~~~~~g~~~i~l~Dt~G~~~P~~v~~lv~~~~~~~~~~~l~~-H~Hn 190 (237)
T PF00682_consen 118 KELGYEV-AFGCED---ASRTDPEELLELAEALAEAGADIIYLADTVGIMTPEDVAELVRALREALPDIPLGF-HAHN 190 (237)
T ss_dssp HHTTSEE-EEEETT---TGGSSHHHHHHHHHHHHHHT-SEEEEEETTS-S-HHHHHHHHHHHHHHSTTSEEEE-EEBB
T ss_pred HhcCCce-EeCccc---cccccHHHHHHHHHHHHHcCCeEEEeeCccCCcCHHHHHHHHHHHHHhccCCeEEE-EecC
Confidence 4566542 343322 234566788899999999988776555322122332 3555667788866555 6654
No 390
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=27.79 E-value=2.1e+02 Score=24.96 Aligned_cols=59 Identities=14% Similarity=0.125 Sum_probs=41.1
Q ss_pred EEcCCCCcchHHHHHHHHHhcCCceEEEecCCCCCCCCcCCcHHHHHHHHHHhh-hCCeEEEEecc
Q 019335 139 CLANPAEDVIGIKQLEQLILKDGFRAVRFNPYLWPSGQQMTNEVGKAMFSKAGE-LGVPVGFMCMK 203 (342)
Q Consensus 139 ~~i~p~~~~~~~~eler~~~~~g~~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e-~~lpv~iH~~~ 203 (342)
..+||... +.++++-+.+.+.|.-+|-+... ...+...+.++.+.+.+ .++||.+-.+.
T Consensus 3 ~~iDP~k~-e~~~~ia~~v~~~gtDaI~VGGS-----~gvt~~~~~~~v~~ik~~~~lPvilfp~~ 62 (205)
T TIGR01769 3 TLIDPEKS-DEIEKIAKNAKDAGTDAIMVGGS-----LGIVESNLDQTVKKIKKITNLPVILFPGN 62 (205)
T ss_pred cccCCCcH-HHHHHHHHHHHhcCCCEEEEcCc-----CCCCHHHHHHHHHHHHhhcCCCEEEECCC
Confidence 35678765 33444444446788999876643 12466788999999998 68999987664
No 391
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=27.70 E-value=2.5e+02 Score=26.78 Aligned_cols=18 Identities=17% Similarity=0.289 Sum_probs=10.0
Q ss_pred HHHHHHHhcCCCcE--EEcc
Q 019335 279 PLSQVVSSFGANRV--MWGS 296 (342)
Q Consensus 279 ~l~~~i~~~G~dRi--lfGS 296 (342)
...++++.-|.|-+ =+||
T Consensus 177 eA~~Fv~~TgvD~LAvaiGt 196 (347)
T PRK13399 177 QAVDFVQRTGVDALAIAIGT 196 (347)
T ss_pred HHHHHHHHHCcCEEhhhhcc
Confidence 34555666677755 3454
No 392
>PRK08636 aspartate aminotransferase; Provisional
Probab=27.42 E-value=1.8e+02 Score=27.91 Aligned_cols=50 Identities=14% Similarity=0.068 Sum_probs=35.9
Q ss_pred HHHHHHHhc--CCceEEEec-CCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEEe
Q 019335 151 KQLEQLILK--DGFRAVRFN-PYLWPSGQQMTNEVGKAMFSKAGELGVPVGFMC 201 (342)
Q Consensus 151 ~eler~~~~--~g~~Gvk~~-~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH~ 201 (342)
+.+++.+++ .+.+.+-+. |. .|.|..+..++++.+.+.|+++++.|..--
T Consensus 163 ~~l~~~~~~~~~~~~~i~~~~P~-NPTG~~~s~~~~~~l~~~a~~~~~~II~De 215 (403)
T PRK08636 163 ENLEKALRESSPKPKYVVVNFPH-NPTTATVEKSFYERLVALAKKERFYIISDI 215 (403)
T ss_pred hHHHHHHhhccCCceEEEEeCCC-CCCCccCCHHHHHHHHHHHHHcCcEEEEec
Confidence 456665543 356666555 33 367888999999999999999999887543
No 393
>PLN00143 tyrosine/nicotianamine aminotransferase; Provisional
Probab=27.37 E-value=5.6e+02 Score=24.56 Aligned_cols=49 Identities=22% Similarity=0.238 Sum_probs=34.5
Q ss_pred HHHHHHHHhcCCceEEEe-cCCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEE
Q 019335 150 IKQLEQLILKDGFRAVRF-NPYLWPSGQQMTNEVGKAMFSKAGELGVPVGFM 200 (342)
Q Consensus 150 ~~eler~~~~~g~~Gvk~-~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH 200 (342)
.++|++.+ ....+.+-+ +|. .|.|..++.++++.+.+.|+++++.|..-
T Consensus 160 ~~~l~~~~-~~~~~~~~~~nP~-NPTG~~~s~~~~~~l~~~a~~~~~~ii~D 209 (409)
T PLN00143 160 LDAVEAIA-DENTIAMVIINPG-NPCGSVYSYEHLNKIAETARKLGILVIAD 209 (409)
T ss_pred HHHHHHhc-ccCCEEEEEECCC-CCCCCccCHHHHHHHHHHHHHcCCeEEEE
Confidence 46676664 334444433 453 36688889999999999999999888654
No 394
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=27.32 E-value=1.6e+02 Score=24.09 Aligned_cols=46 Identities=17% Similarity=0.117 Sum_probs=33.6
Q ss_pred HHHHHHHHHhcCCceEEEecCCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEEec
Q 019335 149 GIKQLEQLILKDGFRAVRFNPYLWPSGQQMTNEVGKAMFSKAGELGVPVGFMCM 202 (342)
Q Consensus 149 ~~~eler~~~~~g~~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH~~ 202 (342)
..+++++.. ..+.||.+.. |. +..+.+.++++.+.+.|+++.+.++
T Consensus 51 l~~~I~~~~--~~~~gVt~SG-----GE-l~~~~l~~ll~~lk~~Gl~i~l~Tg 96 (147)
T TIGR02826 51 LTKTLDKYR--SLISCVLFLG-----GE-WNREALLSLLKIFKEKGLKTCLYTG 96 (147)
T ss_pred HHHHHHHhC--CCCCEEEEec-----hh-cCHHHHHHHHHHHHHCCCCEEEECC
Confidence 445555442 3456777764 55 7778899999999999999988875
No 395
>PLN02824 hydrolase, alpha/beta fold family protein
Probab=27.20 E-value=1.1e+02 Score=27.58 Aligned_cols=48 Identities=15% Similarity=0.045 Sum_probs=35.5
Q ss_pred hHHHHHHhHHCCCceEEEeCCCCCccchHHHHHHHHhCCCcEEEEEEcCCC
Q 019335 94 VDFLLQCMEEASVDGALIVQPINHKFDHSLVTSVLKKYPSKFVGCCLANPA 144 (342)
Q Consensus 94 ~~~ll~~md~~GI~~~v~~~~~~~~~~N~~~~~~~~~~p~r~~g~~~i~p~ 144 (342)
.+++.+.+++.+++.+++++-+.- -.....++.++|+++.+++.+++.
T Consensus 89 a~~l~~~l~~l~~~~~~lvGhS~G---g~va~~~a~~~p~~v~~lili~~~ 136 (294)
T PLN02824 89 GEQLNDFCSDVVGDPAFVICNSVG---GVVGLQAAVDAPELVRGVMLINIS 136 (294)
T ss_pred HHHHHHHHHHhcCCCeEEEEeCHH---HHHHHHHHHhChhheeEEEEECCC
Confidence 456777888999999988864321 234567788899999999888763
No 396
>PRK13753 dihydropteroate synthase; Provisional
Probab=27.07 E-value=5e+02 Score=23.90 Aligned_cols=82 Identities=10% Similarity=0.089 Sum_probs=46.0
Q ss_pred chHHHHHHHHHhcCCceEEEecCCCC-CCCCcCC-cH---HHHHHHHHHhhhCCeEEEEeccCC----------------
Q 019335 147 VIGIKQLEQLILKDGFRAVRFNPYLW-PSGQQMT-NE---VGKAMFSKAGELGVPVGFMCMKGL---------------- 205 (342)
Q Consensus 147 ~~~~~eler~~~~~g~~Gvk~~~~~~-~~g~~l~-~~---~~~~~~~~a~e~~lpv~iH~~~~~---------------- 205 (342)
+.++++.++++ +.|.--|-+....- |....++ .+ ++.|+++.+.+.+.+|.+-+....
T Consensus 25 d~a~~~a~~m~-~~GAdIIDIGgeSTrPga~~vs~eeE~~Rv~pvI~~l~~~~~~ISIDT~~~~va~~al~aGadiINDV 103 (279)
T PRK13753 25 AGAVTAAIEML-RVGSDVVDVGPAASHPDARPVSPADEIRRIAPLLDALSDQMHRVSIDSFQPETQRYALKRGVGYLNDI 103 (279)
T ss_pred HHHHHHHHHHH-HCCCcEEEECCCCCCCCCCcCCHHHHHHHHHHHHHHHHhCCCcEEEECCCHHHHHHHHHcCCCEEEeC
Confidence 34566666664 55666665553321 1111121 12 334777777777777777665310
Q ss_pred -CCCHHHHHHHHHhCCCCcEEecccC
Q 019335 206 -NLHISEIEELCTEFPSTTVLLDHLA 230 (342)
Q Consensus 206 -~~~~~~l~~l~~~~P~lk~vl~H~G 230 (342)
....+.+..++.++ ++.+|+-|+-
T Consensus 104 sg~~d~~~~~vva~~-~~~vVlmH~~ 128 (279)
T PRK13753 104 QGFPDPALYPDIAEA-DCRLVVMHSA 128 (279)
T ss_pred CCCCchHHHHHHHHc-CCCEEEEecC
Confidence 11234566777776 6889999983
No 397
>PRK00115 hemE uroporphyrinogen decarboxylase; Validated
Probab=27.05 E-value=3.7e+02 Score=25.28 Aligned_cols=70 Identities=16% Similarity=0.000 Sum_probs=35.4
Q ss_pred HHHHHHhCCCcEEEEEEcCCC----CcchHHHHHHHHHhcCCceEEEecCCCCCCCCcCCcHHHHHHHHHHhhhC
Q 019335 124 VTSVLKKYPSKFVGCCLANPA----EDVIGIKQLEQLILKDGFRAVRFNPYLWPSGQQMTNEVGKAMFSKAGELG 194 (342)
Q Consensus 124 ~~~~~~~~p~r~~g~~~i~p~----~~~~~~~eler~~~~~g~~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e~~ 194 (342)
+.+..+..+++..-.+.++|. .+++..++.+++++..+-.|.-+.+.+. -...-..+..+.+.+.+.+++
T Consensus 272 l~~~k~~~g~~~~i~Gni~p~ll~gt~e~i~~~~~~~i~~~~~~gfIl~~Gc~-i~~~tp~eNi~a~v~a~~~y~ 345 (346)
T PRK00115 272 LAEARRRVGDKKALQGNLDPAVLLAPPEAIEEEVRAILDGGGGPGHIFNLGHG-ILPETPPENVKALVEAVHELS 345 (346)
T ss_pred HHHHHHHcCCCeEEEeCCChhHhcCCHHHHHHHHHHHHHHhCCCCeeeecCCc-CCCCcCHHHHHHHHHHHHHhc
Confidence 445556666655545555652 1344455666666544334444444321 011223456677777776654
No 398
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=26.92 E-value=4.6e+02 Score=23.42 Aligned_cols=42 Identities=12% Similarity=0.158 Sum_probs=22.8
Q ss_pred CChHHHHHHhHHCCCceEEEeCCCCCccchHHHHHHHHhCC-CcEE
Q 019335 92 GHVDFLLQCMEEASVDGALIVQPINHKFDHSLVTSVLKKYP-SKFV 136 (342)
Q Consensus 92 ~~~~~ll~~md~~GI~~~v~~~~~~~~~~N~~~~~~~~~~p-~r~~ 136 (342)
.+.+++.+.+. .|+++.++ ..... .+-+.+.++.+.++ ++++
T Consensus 84 ~s~~d~~~~~~-~Ga~~viv-gt~~~-~~p~~~~~~~~~~~~~~iv 126 (254)
T TIGR00735 84 KSIEDVDKLLR-AGADKVSI-NTAAV-KNPELIYELADRFGSQCIV 126 (254)
T ss_pred CCHHHHHHHHH-cCCCEEEE-ChhHh-hChHHHHHHHHHcCCCCEE
Confidence 35555555444 68777655 32221 12345666677776 5655
No 399
>PLN02540 methylenetetrahydrofolate reductase
Probab=26.90 E-value=7e+02 Score=25.54 Aligned_cols=100 Identities=13% Similarity=0.144 Sum_probs=53.8
Q ss_pred ChHHHHHHhHHCCCceEEEeCCCC-----C-----c-cc-hHHHHHHHHh-CCCcE-EEEEEcCCCCcc-----------
Q 019335 93 HVDFLLQCMEEASVDGALIVQPIN-----H-----K-FD-HSLVTSVLKK-YPSKF-VGCCLANPAEDV----------- 147 (342)
Q Consensus 93 ~~~~ll~~md~~GI~~~v~~~~~~-----~-----~-~~-N~~~~~~~~~-~p~r~-~g~~~i~p~~~~----------- 147 (342)
.++..|..+.++||+..+++.... + + +. -..+++..++ +.+.| +|++..+-..++
T Consensus 74 ~L~~~L~~a~~~GIrNILALrGDpp~~~d~~~~~~g~F~~A~dLV~~Ir~~~gd~f~IgVAGYPEgHpe~~~~~~~~~~~ 153 (565)
T PLN02540 74 KIDHALETIKSNGIQNILALRGDPPHGQDKFVQVEGGFACALDLVKHIRSKYGDYFGITVAGYPEAHPDVIGGDGLATPE 153 (565)
T ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCCCCCcCCCCCCcccHHHHHHHHHHhCCCCceEEEeCCCCCCCcccccccccCCC
Confidence 467778888999999998874311 0 1 11 1233444444 55533 455544321111
Q ss_pred hHHHHHHHHHh--cCCceEEEecCCCCCCCCcCCcHHHHHHHHHHhhhC--CeEEE
Q 019335 148 IGIKQLEQLIL--KDGFRAVRFNPYLWPSGQQMTNEVGKAMFSKAGELG--VPVGF 199 (342)
Q Consensus 148 ~~~~eler~~~--~~g~~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e~~--lpv~i 199 (342)
+..++++++.+ +.|..-+--. ..++.+.+..+.++|++.| +||..
T Consensus 154 ~~~~dl~~Lk~KvdAGAdFiITQ-------lfFD~d~f~~f~~~~r~~Gi~vPIip 202 (565)
T PLN02540 154 AYQKDLAYLKEKVDAGADLIITQ-------LFYDTDIFLKFVNDCRQIGITCPIVP 202 (565)
T ss_pred ChHHHHHHHHHHHHcCCCEEeec-------cccCHHHHHHHHHHHHhcCCCCCEEe
Confidence 01134444422 3455533211 2356678899999999998 55543
No 400
>PRK06348 aspartate aminotransferase; Provisional
Probab=26.90 E-value=3.6e+02 Score=25.55 Aligned_cols=49 Identities=27% Similarity=0.298 Sum_probs=34.8
Q ss_pred HHHHHHHHhcCCceEEEec-CCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEE
Q 019335 150 IKQLEQLILKDGFRAVRFN-PYLWPSGQQMTNEVGKAMFSKAGELGVPVGFM 200 (342)
Q Consensus 150 ~~eler~~~~~g~~Gvk~~-~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH 200 (342)
.+.|++.+ ....+.|-+. |. .|.|..++.++++.+.+.|+++|+.|..-
T Consensus 152 ~~~l~~~~-~~~~~~v~l~~p~-NPtG~~~s~~~~~~l~~~a~~~~~~ii~D 201 (384)
T PRK06348 152 VKKLEALI-TSKTKAIILNSPN-NPTGAVFSKETLEEIAKIAIEYDLFIISD 201 (384)
T ss_pred HHHHHHhh-CcCccEEEEeCCC-CCCCcCCCHHHHHHHHHHHHHCCeEEEEe
Confidence 46677664 3355555443 32 35678888899999999999999887654
No 401
>PRK08445 hypothetical protein; Provisional
Probab=26.73 E-value=5.5e+02 Score=24.30 Aligned_cols=114 Identities=12% Similarity=0.097 Sum_probs=57.5
Q ss_pred ChHHHHH---HhHHCCCceEEEeCCCCCccchHHHHH----HHHhCCC-cEEEEEEcCCCC-----cchHHHHHHHHHhc
Q 019335 93 HVDFLLQ---CMEEASVDGALIVQPINHKFDHSLVTS----VLKKYPS-KFVGCCLANPAE-----DVIGIKQLEQLILK 159 (342)
Q Consensus 93 ~~~~ll~---~md~~GI~~~v~~~~~~~~~~N~~~~~----~~~~~p~-r~~g~~~i~p~~-----~~~~~~eler~~~~ 159 (342)
+.++.++ +..+.|+...++........+.+++.+ +.+.+|+ ++.++....... .....++++++ ++
T Consensus 74 ~~eeI~~~~~~a~~~g~~~i~~~gg~~~~~~~e~~~~l~~~Ik~~~p~i~~~a~s~~ei~~~a~~~~~~~~e~L~~L-ke 152 (348)
T PRK08445 74 SFEEIDKKIEELLAIGGTQILFQGGVHPKLKIEWYENLVSHIAQKYPTITIHGFSAVEIDYIAKISKISIKEVLERL-QA 152 (348)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCCCCCCHHHHHHHHHHHHHHCCCcEEEEccHHHHHHHHHHhCCCHHHHHHHH-HH
Confidence 4555544 566789887766543222223444443 3346775 333332211110 00113566666 56
Q ss_pred CCce---EEEecCCC--CC---CCCcCCcHHHHHHHHHHhhhCCeEEEEeccCCCC
Q 019335 160 DGFR---AVRFNPYL--WP---SGQQMTNEVGKAMFSKAGELGVPVGFMCMKGLNL 207 (342)
Q Consensus 160 ~g~~---Gvk~~~~~--~~---~g~~l~~~~~~~~~~~a~e~~lpv~iH~~~~~~~ 207 (342)
.|+. |+.+.... .. .....+-..+....+.|.++|+++..-.--|...
T Consensus 153 AGl~~~~g~glE~~~d~v~~~~~pk~~t~~~~i~~i~~a~~~Gi~~~sg~i~G~~E 208 (348)
T PRK08445 153 KGLSSIPGAGAEILSDRVRDIIAPKKLDSDRWLEVHRQAHLIGMKSTATMMFGTVE 208 (348)
T ss_pred cCCCCCCCCceeeCCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCeeeeEEEecCCC
Confidence 6765 33332110 00 0123444577899999999999997654333333
No 402
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=26.71 E-value=4.8e+02 Score=23.60 Aligned_cols=123 Identities=14% Similarity=0.092 Sum_probs=60.9
Q ss_pred CChHHHHHHh---HHCCCceEEEeCCCCCcc--c-hHHHHHHHHhCCC-cEEEEEEcCCCCcchHHHHHHHHHhcCCceE
Q 019335 92 GHVDFLLQCM---EEASVDGALIVQPINHKF--D-HSLVTSVLKKYPS-KFVGCCLANPAEDVIGIKQLEQLILKDGFRA 164 (342)
Q Consensus 92 ~~~~~ll~~m---d~~GI~~~v~~~~~~~~~--~-N~~~~~~~~~~p~-r~~g~~~i~p~~~~~~~~eler~~~~~g~~G 164 (342)
.+++++++.+ .+.|+....++..+.... . .+++.++.+.-.+ .+..++.+...+ .+.++++ ++.|+..
T Consensus 62 ~~~eei~~~~~~~~~~g~~~~~l~~~g~~~~~~~~~~~~~~i~~~~~~~~i~~~~~~g~~~----~e~l~~L-k~aG~~~ 136 (296)
T TIGR00433 62 KKVDEVLEEARKAKAAGATRFCLVASGRGPKDREFMEYVEAMVQIVEEMGLKTCATLGLLD----PEQAKRL-KDAGLDY 136 (296)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEEecCCCChHHHHHHHHHHHHHHHhCCCeEEecCCCCC----HHHHHHH-HHcCCCE
Confidence 3567777655 457988765543221111 1 2344444432111 133233322222 2445444 6778887
Q ss_pred EEecCCCCCC-----CCcCCcHHHHHHHHHHhhhCCeEEEEeccCCCCCHHH---HHHHHHhC
Q 019335 165 VRFNPYLWPS-----GQQMTNEVGKAMFSKAGELGVPVGFMCMKGLNLHISE---IEELCTEF 219 (342)
Q Consensus 165 vk~~~~~~~~-----g~~l~~~~~~~~~~~a~e~~lpv~iH~~~~~~~~~~~---l~~l~~~~ 219 (342)
+.+.....+. ...-+-+.....++.+.+.|+.|..|.--|......+ ....+.+.
T Consensus 137 v~i~~E~~~~~~~~i~~~~s~~~~~~ai~~l~~~Gi~v~~~~i~Gl~et~~d~~~~~~~l~~l 199 (296)
T TIGR00433 137 YNHNLDTSQEFYSNIISTHTYDDRVDTLENAKKAGLKVCSGGIFGLGETVEDRIGLALALANL 199 (296)
T ss_pred EEEcccCCHHHHhhccCCCCHHHHHHHHHHHHHcCCEEEEeEEEeCCCCHHHHHHHHHHHHhC
Confidence 7655331100 0111224556778889999999988864444333333 33344444
No 403
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=26.64 E-value=2.2e+02 Score=26.39 Aligned_cols=36 Identities=8% Similarity=0.002 Sum_probs=23.5
Q ss_pred CcEEEEEEcCCCCcchHHHHHHHHHhcCCceEEEecC
Q 019335 133 SKFVGCCLANPAEDVIGIKQLEQLILKDGFRAVRFNP 169 (342)
Q Consensus 133 ~r~~g~~~i~p~~~~~~~~eler~~~~~g~~Gvk~~~ 169 (342)
+++...+.+...++++..++++++. +.|+++||+..
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~Gf~~iKik~ 157 (316)
T cd03319 122 RPLETDYTISIDTPEAMAAAAKKAA-KRGFPLLKIKL 157 (316)
T ss_pred CCceeEEEEeCCCHHHHHHHHHHHH-HcCCCEEEEEe
Confidence 3444444444455555667787774 67999999875
No 404
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=26.64 E-value=2.7e+02 Score=25.23 Aligned_cols=101 Identities=16% Similarity=0.111 Sum_probs=55.8
Q ss_pred CCChHHHHHHhHHCCCceEEEeCCCCCccchHHHHHHH-HhC--CCcEEE-E---EEcCCCCc-chHHHHHHHHHhcCCc
Q 019335 91 PGHVDFLLQCMEEASVDGALIVQPINHKFDHSLVTSVL-KKY--PSKFVG-C---CLANPAED-VIGIKQLEQLILKDGF 162 (342)
Q Consensus 91 ~~~~~~ll~~md~~GI~~~v~~~~~~~~~~N~~~~~~~-~~~--p~r~~g-~---~~i~p~~~-~~~~~eler~~~~~g~ 162 (342)
..+++.+++...+.|++..++. +. .++.+ +.. +-.++- + ..+.|.-. ..-+.++++.+ +.|.
T Consensus 38 ~~d~~~~~~~a~~~~~~av~v~-~~--------~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~ve~A~-~~Ga 107 (267)
T PRK07226 38 LVDIRDTVNKVAEGGADAVLMH-KG--------LARHGHRGYGRDVGLIVHLSASTSLSPDPNDKVLVGTVEEAI-KLGA 107 (267)
T ss_pred cCCHHHHHHHHHhcCCCEEEeC-Hh--------HHhhhccccCCCCcEEEEEcCCCCCCCCCCcceeeecHHHHH-HcCC
Confidence 3578889999999998776654 32 12222 211 111211 1 11212211 22346777774 7788
Q ss_pred eEEEecCCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEEe
Q 019335 163 RAVRFNPYLWPSGQQMTNEVGKAMFSKAGELGVPVGFMC 201 (342)
Q Consensus 163 ~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH~ 201 (342)
..+.+..........-....+..+.+.|.++|+|+.++.
T Consensus 108 d~v~~~~~~g~~~~~~~~~~~~~v~~~~~~~g~pl~vi~ 146 (267)
T PRK07226 108 DAVSVHVNVGSETEAEMLEDLGEVAEECEEWGMPLLAMM 146 (267)
T ss_pred CEEEEEEecCChhHHHHHHHHHHHHHHHHHcCCcEEEEE
Confidence 877766442110111122456777888999999999875
No 405
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=26.61 E-value=5e+02 Score=23.70 Aligned_cols=18 Identities=17% Similarity=0.134 Sum_probs=10.4
Q ss_pred HHHHHhHHCCCceEEEeC
Q 019335 96 FLLQCMEEASVDGALIVQ 113 (342)
Q Consensus 96 ~ll~~md~~GI~~~v~~~ 113 (342)
.+++.+...|+....+..
T Consensus 47 ~~i~~~~~~gi~~I~~tG 64 (302)
T TIGR02668 47 RIVRVASEFGVRKVKITG 64 (302)
T ss_pred HHHHHHHHcCCCEEEEEC
Confidence 344455667777655544
No 406
>PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha
Probab=26.48 E-value=5.3e+02 Score=23.99 Aligned_cols=125 Identities=14% Similarity=0.087 Sum_probs=66.3
Q ss_pred HHHHHHhHHCCCceEEEeCCCCCccch-HHHHHHHHhCCCcEEE---EEEcCCCCcchHHHHHHHHHhcCCceEEEecCC
Q 019335 95 DFLLQCMEEASVDGALIVQPINHKFDH-SLVTSVLKKYPSKFVG---CCLANPAEDVIGIKQLEQLILKDGFRAVRFNPY 170 (342)
Q Consensus 95 ~~ll~~md~~GI~~~v~~~~~~~~~~N-~~~~~~~~~~p~r~~g---~~~i~p~~~~~~~~eler~~~~~g~~Gvk~~~~ 170 (342)
.+.++++-+.||..+|++...+...+. +.+.+.++++.=|++| +..++|...- ...+-......|= |-+...
T Consensus 83 ~~al~e~~~~Gvk~~vIisaGf~e~g~~~~~~~~ar~~girviGPNc~Gii~~~~~~--~~~~~~~~~~~G~--ValiSQ 158 (300)
T PLN00125 83 AAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECK--IGIMPGYIHKPGR--IGIVSR 158 (300)
T ss_pred HHHHHHHHHcCCCEEEEECCCCCcccHHHHHHHHHhhcCCEEECCCCceeecccccc--eeecCCCCCCCCc--EEEEeC
Confidence 445555666788888887654322222 2333445666556765 3455664310 0000000011222 222221
Q ss_pred CCCCCCcCCcHHHHHHHHHHhhhCCeEE--EEeccC--CCCCHHHHHHHHHhCCCCcEEecccCC
Q 019335 171 LWPSGQQMTNEVGKAMFSKAGELGVPVG--FMCMKG--LNLHISEIEELCTEFPSTTVLLDHLAF 231 (342)
Q Consensus 171 ~~~~g~~l~~~~~~~~~~~a~e~~lpv~--iH~~~~--~~~~~~~l~~l~~~~P~lk~vl~H~G~ 231 (342)
+| .....+...+.+.|+-+. +.++.. ......++.+.+..-|++|+|+-++=.
T Consensus 159 ---SG-----~l~~~l~~~~~~~giG~S~~VS~Gn~~~adv~~~d~L~yl~~Dp~T~~I~ly~E~ 215 (300)
T PLN00125 159 ---SG-----TLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCLEKFVKDPQTEGIILIGEI 215 (300)
T ss_pred ---Cc-----cHHHHHHHHHHHcCCCeEEEEEeCCCCCCCCCHHHHHHHHhhCCCCcEEEEEecc
Confidence 11 233567777887777664 444433 334567888888888999999877753
No 407
>PLN02591 tryptophan synthase
Probab=26.47 E-value=4.8e+02 Score=23.51 Aligned_cols=177 Identities=18% Similarity=0.191 Sum_probs=101.0
Q ss_pred HHHHHHhHHCCCceEEE-eCCCC-----------------CccchHHHHHHHHh---CCC-cEEEEEEcCCCCcchHHHH
Q 019335 95 DFLLQCMEEASVDGALI-VQPIN-----------------HKFDHSLVTSVLKK---YPS-KFVGCCLANPAEDVIGIKQ 152 (342)
Q Consensus 95 ~~ll~~md~~GI~~~v~-~~~~~-----------------~~~~N~~~~~~~~~---~p~-r~~g~~~i~p~~~~~~~~e 152 (342)
-+++..|.+.|+|..=+ ++-+. .+..-+.+.+.+++ .++ .++-+...||-..- .++.
T Consensus 19 ~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~~~~~r~~~~~p~ilm~Y~N~i~~~-G~~~ 97 (250)
T PLN02591 19 AEALRLLDACGADVIELGVPYSDPLADGPVIQAAATRALEKGTTLDSVISMLKEVAPQLSCPIVLFTYYNPILKR-GIDK 97 (250)
T ss_pred HHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCEEEEecccHHHHh-HHHH
Confidence 44566788889987644 22221 11112234444443 222 35666777875421 3344
Q ss_pred HHHHHhcCCceEEEecCCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEEeccCCCCCHHHHHHHHHhCCCCcEEecccCCC
Q 019335 153 LEQLILKDGFRAVRFNPYLWPSGQQMTNEVGKAMFSKAGELGVPVGFMCMKGLNLHISEIEELCTEFPSTTVLLDHLAFC 232 (342)
Q Consensus 153 ler~~~~~g~~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH~~~~~~~~~~~l~~l~~~~P~lk~vl~H~G~~ 232 (342)
+-+.+++.|+.|+-+... .-++..++.++|+++|+...+-+... ...+.+..+++.-++.-.++...|..
T Consensus 98 F~~~~~~aGv~GviipDL--------P~ee~~~~~~~~~~~gl~~I~lv~Pt--t~~~ri~~ia~~~~gFIY~Vs~~GvT 167 (250)
T PLN02591 98 FMATIKEAGVHGLVVPDL--------PLEETEALRAEAAKNGIELVLLTTPT--TPTERMKAIAEASEGFVYLVSSTGVT 167 (250)
T ss_pred HHHHHHHcCCCEEEeCCC--------CHHHHHHHHHHHHHcCCeEEEEeCCC--CCHHHHHHHHHhCCCcEEEeeCCCCc
Confidence 433337889999976632 22678899999999999998776532 23456888888888876777777753
Q ss_pred CCCCCchhhHhHHH----HhcccCCCcEEEecCcccccccCCCCCCCchhHHHHHHHhcCCCcEEEccCC
Q 019335 233 KPPSNDEESLAFSN----LLKLSRFPQVYVKFSALFRVSRMPFPYQDLSSPLSQVVSSFGANRVMWGSDF 298 (342)
Q Consensus 233 ~p~~~~~~~~~~~~----~~~l~~~~Nvy~~~S~~~~~~~~~~~~~~~~~~l~~~i~~~G~dRilfGSD~ 298 (342)
-. .........+ +.+..+.| +.+.+.-- + .+-++++ ...|.|=++-||=+
T Consensus 168 G~--~~~~~~~~~~~i~~vk~~~~~P-v~vGFGI~-----------~-~e~v~~~-~~~GADGvIVGSal 221 (250)
T PLN02591 168 GA--RASVSGRVESLLQELKEVTDKP-VAVGFGIS-----------K-PEHAKQI-AGWGADGVIVGSAM 221 (250)
T ss_pred CC--CcCCchhHHHHHHHHHhcCCCc-eEEeCCCC-----------C-HHHHHHH-HhcCCCEEEECHHH
Confidence 21 1110112222 22333344 55544321 1 1345554 45589999999964
No 408
>PF02614 UxaC: Glucuronate isomerase; InterPro: IPR003766 Uronate isomerase (also known as glucuronate isomerase) catalyses the reaction D-glucuronate to D-fructuronate and also converts D-galacturonate to D-tagaturonate [].; GO: 0008880 glucuronate isomerase activity, 0006064 glucuronate catabolic process; PDB: 2QEE_B 3HKA_A 3HK8_A 2PNK_H 2Q6E_A 3HK7_A 3HK5_B 3HK9_A 2Q08_L 1J5S_B ....
Probab=26.37 E-value=29 Score=34.37 Aligned_cols=26 Identities=15% Similarity=0.280 Sum_probs=15.0
Q ss_pred hHHHHHHHhcC---CCcEEEccCCCCCCC
Q 019335 278 SPLSQVVSSFG---ANRVMWGSDFPYVVP 303 (342)
Q Consensus 278 ~~l~~~i~~~G---~dRilfGSD~P~~~~ 303 (342)
..+..++..|. ..+|.+|+=|-+.+.
T Consensus 355 ~~la~lag~F~~~~~~~vq~G~~WWF~D~ 383 (462)
T PF02614_consen 355 HELATLAGNFQDGGIPKVQLGGAWWFNDT 383 (462)
T ss_dssp HHHHHHHHHST-TTSTTEEEB---GGG-S
T ss_pred HHHHHHHhhcCCcCcceeeecCcccccCC
Confidence 55666777773 229999999888764
No 409
>TIGR01520 FruBisAldo_II_A fructose-bisphosphate aldolase, class II, yeast/E. coli subtype. This model represents one of two deeply split, architecturally distinct clades of the family that includes class II fructose-bisphosphate aldolases, tagatose-bisphosphate aldolases, and related uncharacterized proteins. This family is well-conserved and includes characterized FBA from Saccharomyces cerevisiae, Escherichia coli, and Corynebacterium glutamicum. Proteins outside the scope of this model may also be designated as class II fructose-bisphosphate aldolases, but are well separated in an alignment-based phylogenetic tree.
Probab=26.30 E-value=5.8e+02 Score=24.41 Aligned_cols=23 Identities=13% Similarity=0.150 Sum_probs=14.6
Q ss_pred cHHHHHHHHHHhhhCCeEEEEec
Q 019335 180 NEVGKAMFSKAGELGVPVGFMCM 202 (342)
Q Consensus 180 ~~~~~~~~~~a~e~~lpv~iH~~ 202 (342)
.+....+++.|++.+-||.+.+.
T Consensus 37 ~e~~~Avi~AAEe~~sPvIlq~s 59 (357)
T TIGR01520 37 SSTINAALEAAADVKSPIIIQFS 59 (357)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcC
Confidence 35566666666666666666654
No 410
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=25.93 E-value=5e+02 Score=23.50 Aligned_cols=104 Identities=15% Similarity=0.168 Sum_probs=59.5
Q ss_pred HHHHHHHhhhCCeEEEEeccCCCCCHHHH---HHHHHhCCCCcEEecccCC-CCCCCCchhhHhHHH---HhcccCCCcE
Q 019335 184 KAMFSKAGELGVPVGFMCMKGLNLHISEI---EELCTEFPSTTVLLDHLAF-CKPPSNDEESLAFSN---LLKLSRFPQV 256 (342)
Q Consensus 184 ~~~~~~a~e~~lpv~iH~~~~~~~~~~~l---~~l~~~~P~lk~vl~H~G~-~~p~~~~~~~~~~~~---~~~l~~~~Nv 256 (342)
.++++++.+.|.||.+=.+.. ..+.++ .+.+.+.-+-++++.|=|. ..|. ..++...... +.+....| |
T Consensus 112 ~~LL~~va~tgkPVilk~G~~--~t~~e~~~A~e~i~~~Gn~~i~L~eRg~~~Y~~-~~~n~~dl~ai~~lk~~~~lP-V 187 (250)
T PRK13397 112 FEFLKTLSHIDKPILFKRGLM--ATIEEYLGALSYLQDTGKSNIILCERGVRGYDV-ETRNMLDIMAVPIIQQKTDLP-I 187 (250)
T ss_pred HHHHHHHHccCCeEEEeCCCC--CCHHHHHHHHHHHHHcCCCeEEEEccccCCCCC-ccccccCHHHHHHHHHHhCCC-e
Confidence 789999999999999876622 234444 3444445456799999443 3231 1111222222 22333455 7
Q ss_pred EEecCcccccccCCCCCCCchhHHHHHHHhcCCCcEEEccCC
Q 019335 257 YVKFSALFRVSRMPFPYQDLSSPLSQVVSSFGANRVMWGSDF 298 (342)
Q Consensus 257 y~~~S~~~~~~~~~~~~~~~~~~l~~~i~~~G~dRilfGSD~ 298 (342)
-+|.|-... ..+..+.+..+.-.+|+|=+|..+.+
T Consensus 188 ivd~SHs~G-------~r~~v~~~a~AAvA~GAdGl~IE~H~ 222 (250)
T PRK13397 188 IVDVSHSTG-------RRDLLLPAAKIAKAVGANGIMMEVHP 222 (250)
T ss_pred EECCCCCCc-------ccchHHHHHHHHHHhCCCEEEEEecC
Confidence 788883311 11122344444456799999999864
No 411
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=25.91 E-value=4.5e+02 Score=22.96 Aligned_cols=188 Identities=16% Similarity=0.162 Sum_probs=98.8
Q ss_pred CChHHHHHHhHHCCCceEEE--eCCCCC--ccchHHHHHHHHhCCCc--EEEE--EEcCCCCcchHHHHHHHHHhcCCce
Q 019335 92 GHVDFLLQCMEEASVDGALI--VQPINH--KFDHSLVTSVLKKYPSK--FVGC--CLANPAEDVIGIKQLEQLILKDGFR 163 (342)
Q Consensus 92 ~~~~~ll~~md~~GI~~~v~--~~~~~~--~~~N~~~~~~~~~~p~r--~~g~--~~i~p~~~~~~~~eler~~~~~g~~ 163 (342)
.+++.-...|..+|.+..=+ +..-+- -.--.-+.+..+++-++ |.=+ -+.+| +..++++ ...|..
T Consensus 17 anL~~e~~~~l~~GadwlHlDVMDg~FVpNiT~G~pvV~slR~~~~~~~ffD~HmMV~~P---eq~V~~~----a~agas 89 (224)
T KOG3111|consen 17 ANLAAECKKMLDAGADWLHLDVMDGHFVPNITFGPPVVESLRKHTGADPFFDVHMMVENP---EQWVDQM----AKAGAS 89 (224)
T ss_pred HHHHHHHHHHHHcCCCeEEEeeecccccCCcccchHHHHHHHhccCCCcceeEEEeecCH---HHHHHHH----HhcCcc
Confidence 34556667788889886532 222110 01123466666665222 2222 12344 3244444 355888
Q ss_pred EEEecCCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEEeccCCCCCHHHHHHHHHhCCCCcEEe-cccCCCCCCCCchhhH
Q 019335 164 AVRFNPYLWPSGQQMTNEVGKAMFSKAGELGVPVGFMCMKGLNLHISEIEELCTEFPSTTVLL-DHLAFCKPPSNDEESL 242 (342)
Q Consensus 164 Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH~~~~~~~~~~~l~~l~~~~P~lk~vl-~H~G~~~p~~~~~~~~ 242 (342)
.+.+|.... ++ +..+.+++.+.|+-+.+-.-.+ ..++.+..++... ++-+|. -.-|++.--..++
T Consensus 90 ~~tfH~E~~------q~--~~~lv~~ir~~Gmk~G~alkPg--T~Ve~~~~~~~~~-D~vLvMtVePGFGGQkFme~--- 155 (224)
T KOG3111|consen 90 LFTFHYEAT------QK--PAELVEKIREKGMKVGLALKPG--TPVEDLEPLAEHV-DMVLVMTVEPGFGGQKFMED--- 155 (224)
T ss_pred eEEEEEeec------cC--HHHHHHHHHHcCCeeeEEeCCC--CcHHHHHHhhccc-cEEEEEEecCCCchhhhHHH---
Confidence 888885421 11 6788999999999987765432 3456666666633 333332 2333321000000
Q ss_pred hHHHHhccc-CCCcEEEecCcccccccCCCCCCCchhHHHHHHHhcCCCcEEEccCCCCCCCCCChHhHHHHHH
Q 019335 243 AFSNLLKLS-RFPQVYVKFSALFRVSRMPFPYQDLSSPLSQVVSSFGANRVMWGSDFPYVVPECGYKGGREAAS 315 (342)
Q Consensus 243 ~~~~~~~l~-~~~Nvy~~~S~~~~~~~~~~~~~~~~~~l~~~i~~~G~dRilfGSD~P~~~~~~~~~~~~~~~~ 315 (342)
....+..|. ++||+.++.-|-... ..+..+.+. |++-++-||-+-.. .++...+..++
T Consensus 156 mm~KV~~lR~kyp~l~ievDGGv~~-----------~ti~~~a~A-GAN~iVaGsavf~a---~d~~~vi~~lr 214 (224)
T KOG3111|consen 156 MMPKVEWLREKYPNLDIEVDGGVGP-----------STIDKAAEA-GANMIVAGSAVFGA---ADPSDVISLLR 214 (224)
T ss_pred HHHHHHHHHHhCCCceEEecCCcCc-----------chHHHHHHc-CCCEEEecceeecC---CCHHHHHHHHH
Confidence 111222343 799999988774332 234454444 89999999986443 24554444443
No 412
>PRK10949 protease 4; Provisional
Probab=25.88 E-value=1.4e+02 Score=30.91 Aligned_cols=53 Identities=23% Similarity=0.231 Sum_probs=38.4
Q ss_pred HHHHHHHHHhcCCceEEEecCCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEEec
Q 019335 149 GIKQLEQLILKDGFRAVRFNPYLWPSGQQMTNEVGKAMFSKAGELGVPVGFMCM 202 (342)
Q Consensus 149 ~~~eler~~~~~g~~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH~~ 202 (342)
..+.|++..++..++||-+.... +.|.....+.+..-++.+.+.|.||..+++
T Consensus 352 ~~~~l~~a~~D~~vkaVvLrInS-pGGs~~ase~i~~~i~~~r~~gKPVvas~~ 404 (618)
T PRK10949 352 TAAQIRDARLDPKVKAIVLRVNS-PGGSVTASEVIRAELAAARAAGKPVVVSMG 404 (618)
T ss_pred HHHHHHHHHhCCCCcEEEEEecC-CCCcHHHHHHHHHHHHHHHhcCCcEEEEEC
Confidence 46788888888899998776553 335555556666666667778899998875
No 413
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi
Probab=25.74 E-value=4.5e+02 Score=22.90 Aligned_cols=130 Identities=9% Similarity=-0.072 Sum_probs=68.9
Q ss_pred hHHHHHHhHHCCCceEEEeCCCCCccchHHHHHHHHhCCCcEEEEEE---------cCCCCcchHHHHHHHHHhcCCceE
Q 019335 94 VDFLLQCMEEASVDGALIVQPINHKFDHSLVTSVLKKYPSKFVGCCL---------ANPAEDVIGIKQLEQLILKDGFRA 164 (342)
Q Consensus 94 ~~~ll~~md~~GI~~~v~~~~~~~~~~N~~~~~~~~~~p~r~~g~~~---------i~p~~~~~~~~eler~~~~~g~~G 164 (342)
...+++.|...++++.|+.+.. .+....+.+++..-.++.+-. |..... ++.+++-+++.+.|.+-
T Consensus 44 ~~~~i~~~~~~~vdgii~~~~~----~~~~~~~~~~~~~ipvV~~~~~~~~~~~~~v~~d~~-~~~~~~~~~l~~~g~~~ 118 (268)
T cd06270 44 EREAIEFLLERRCDALILHSKA----LSDDELIELAAQVPPLVLINRHIPGLADRCIWLDNE-QGGYLATEHLIELGHRK 118 (268)
T ss_pred HHHHHHHHHHcCCCEEEEecCC----CCHHHHHHHhhCCCCEEEEeccCCCCCCCeEEECcH-HHHHHHHHHHHHCCCce
Confidence 3467788888899999987531 122223334443323333321 112222 23334434334557766
Q ss_pred EEecCCCCCCCCcCCcHHHHHHHHHHhhhCCeE---EEEeccCC-CCCHHHHHHHHHhCCCCcEEecccC
Q 019335 165 VRFNPYLWPSGQQMTNEVGKAMFSKAGELGVPV---GFMCMKGL-NLHISEIEELCTEFPSTTVLLDHLA 230 (342)
Q Consensus 165 vk~~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv---~iH~~~~~-~~~~~~l~~l~~~~P~lk~vl~H~G 230 (342)
|.+.... .+......+...+.+.++++|+.+ .+...... ......+..++++.|+.+.|++..+
T Consensus 119 i~~i~~~--~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d 186 (268)
T cd06270 119 IACITGP--LTKEDARLRLQGYRDALAEAGIALDESLIIEGDFTEEGGYAAMQELLARGAPFTAVFCAND 186 (268)
T ss_pred EEEEeCC--cccccHHHHHHHHHHHHHHcCCCCCcceEEECCCCHHHHHHHHHHHHhCCCCCCEEEEcCc
Confidence 6554321 122234567788888899998765 23322110 0112356677778888888886554
No 414
>PF08915 tRNA-Thr_ED: Archaea-specific editing domain of threonyl-tRNA synthetase; InterPro: IPR015011 Archaea-specific editing domain of threonyl-tRNA synthetase, with marked structural similarity to D-amino acids deacylases found in eubacteria and eukaryotes. This domain can bind D-amino acids, and ensures high fidelity during translation. It is especially responsible for removing incorrectly attached serine from tRNA-Thr. The domain forms a fold that can be defined as two layers of beta-sheets (a three-stranded sheet and a five-stranded sheet), with two alpha-helices located adjacent to the five-stranded sheet []. ; GO: 0004829 threonine-tRNA ligase activity, 0005524 ATP binding, 0008270 zinc ion binding, 0005737 cytoplasm; PDB: 3PD4_B 3PD3_A 2HL0_A 2HL1_A 2HKZ_A 3PD5_B 2HL2_A 3PD2_B 1Y2Q_A.
Probab=25.61 E-value=2.2e+02 Score=23.27 Aligned_cols=63 Identities=11% Similarity=0.174 Sum_probs=34.6
Q ss_pred cEEEEEEcCCCCcc-------hHHHHHHHHHhcCCceEEEecCCCCCCCCcCCcH-----HHHHHHHHHhhhCCeE
Q 019335 134 KFVGCCLANPAEDV-------IGIKQLEQLILKDGFRAVRFNPYLWPSGQQMTNE-----VGKAMFSKAGELGVPV 197 (342)
Q Consensus 134 r~~g~~~i~p~~~~-------~~~~eler~~~~~g~~Gvk~~~~~~~~g~~l~~~-----~~~~~~~~a~e~~lpv 197 (342)
-++.|+.|...|.+ .+++++...++..+..-|.++|+.+- ...+.+| .+..+.+.+.+.|..|
T Consensus 37 alVvF~~VE~~De~~~~~vv~~av~eI~~~a~kv~~~~ivlyPyAHL-Ss~La~P~~A~~iL~~le~~L~~~g~eV 111 (138)
T PF08915_consen 37 ALVVFIAVEKGDEENPEGVVEKAVEEIKWVAKKVKAKRIVLYPYAHL-SSSLASPDVAVEILKKLEERLKSRGFEV 111 (138)
T ss_dssp EEEEEEE-BGGGGG-HHHHHHHHHHHHHHHHHHTT-SEEEEEE-GGG-SSSB--HHHHHHHHHHHHHHHHHTT-EE
T ss_pred eEEEEEEEcCCCCCCHHHHHHHHHHHHHHHHHhcCCCEEEEeCcccc-cCCcCChHHHHHHHHHHHHHHHhCCCeE
Confidence 35556666555432 35667777777788888888887431 2334443 4555566666667666
No 415
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=25.53 E-value=6e+02 Score=24.33 Aligned_cols=16 Identities=19% Similarity=0.237 Sum_probs=11.7
Q ss_pred HHHHHhHHCCCceEEE
Q 019335 96 FLLQCMEEASVDGALI 111 (342)
Q Consensus 96 ~ll~~md~~GI~~~v~ 111 (342)
.+.+.+++.||+..=+
T Consensus 30 ~ia~~L~~~GV~~IE~ 45 (378)
T PRK11858 30 AIARMLDEIGVDQIEA 45 (378)
T ss_pred HHHHHHHHhCCCEEEE
Confidence 4556788999987754
No 416
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=25.40 E-value=1.3e+02 Score=26.96 Aligned_cols=46 Identities=17% Similarity=0.286 Sum_probs=24.7
Q ss_pred cCCceEEEecCCCCCCCCcCCcHHHHHHHHHHh---hhCCeEEEEeccCCCC
Q 019335 159 KDGFRAVRFNPYLWPSGQQMTNEVGKAMFSKAG---ELGVPVGFMCMKGLNL 207 (342)
Q Consensus 159 ~~g~~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~---e~~lpv~iH~~~~~~~ 207 (342)
..|+.-..+.. +++....++..+.+++.++ +.|-+|.+||..|.+.
T Consensus 135 ~~GI~~~~lpi---pDg~aPs~~~i~~~l~~i~~~l~~g~~VaVHC~AGlGR 183 (241)
T PTZ00393 135 SAGINVHELIF---PDGDAPTVDIVSNWLTIVNNVIKNNRAVAVHCVAGLGR 183 (241)
T ss_pred HcCCeEEEeec---CCCCCCCHHHHHHHHHHHHHHHhcCCeEEEECCCCCCH
Confidence 33554444332 3344445554444444444 4688888888766443
No 417
>PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E ....
Probab=25.38 E-value=99 Score=23.55 Aligned_cols=68 Identities=18% Similarity=0.251 Sum_probs=42.4
Q ss_pred HHHHHHHHhcCCceEEEecCCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEEeccCCCCCHHHHHHHHHhCCCCc
Q 019335 150 IKQLEQLILKDGFRAVRFNPYLWPSGQQMTNEVGKAMFSKAGELGVPVGFMCMKGLNLHISEIEELCTEFPSTT 223 (342)
Q Consensus 150 ~~eler~~~~~g~~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH~~~~~~~~~~~l~~l~~~~P~lk 223 (342)
..+++++++...+..+.+.+... | .-.....+.++|+++|+++.+|+. +.+........++...|+..
T Consensus 7 ~~~~~~li~~~a~d~~~~~~~~~--G---Git~~~~i~~~A~~~gi~~~~h~~-~~~i~~aa~~hlaaa~~~~~ 74 (111)
T PF13378_consen 7 LHDFRRLIEAGAVDIVQIDPTRC--G---GITEALRIAALAEAHGIPVMPHSM-ESGIGLAASLHLAAALPNCD 74 (111)
T ss_dssp HHHHHHHHHTTSCSEEEEBHHHH--T---SHHHHHHHHHHHHHTT-EEEEBSS-SSHHHHHHHHHHHHTSTTBS
T ss_pred HHHHHHHHHcCCCCEEEeCchhc--C---CHHHHHHHHHHHHHhCCCEEecCC-CCcHHHHHHHHHHHhcCCCC
Confidence 45777777655555555543211 1 224678999999999999999986 32223344556667677643
No 418
>PLN02450 1-aminocyclopropane-1-carboxylate synthase
Probab=25.25 E-value=5.6e+02 Score=25.24 Aligned_cols=40 Identities=13% Similarity=0.015 Sum_probs=30.8
Q ss_pred CceEEEec-CCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEEe
Q 019335 161 GFRAVRFN-PYLWPSGQQMTNEVGKAMFSKAGELGVPVGFMC 201 (342)
Q Consensus 161 g~~Gvk~~-~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH~ 201 (342)
..++|-+. |. .|.|..+..+.++.+.+.|+++|+.|...-
T Consensus 191 ~~k~v~l~nP~-NPTG~~~s~e~l~~ll~~a~~~~~~iI~DE 231 (468)
T PLN02450 191 KVKGVLITNPS-NPLGTTTTRTELNLLVDFITAKNIHLISDE 231 (468)
T ss_pred CeeEEEEecCC-CCCCcccCHHHHHHHHHHHHHCCcEEEEEc
Confidence 56666544 43 366888899999999999999999987653
No 419
>PRK15452 putative protease; Provisional
Probab=25.07 E-value=6.1e+02 Score=25.03 Aligned_cols=87 Identities=10% Similarity=0.054 Sum_probs=47.9
Q ss_pred HHHHHHhHHCCCceEEEeCCCCCccchHHHHHHHHh-CCC-cEEEEEEcCCCCcchHHHHHHHHHhcCCceEEEecCCCC
Q 019335 95 DFLLQCMEEASVDGALIVQPINHKFDHSLVTSVLKK-YPS-KFVGCCLANPAEDVIGIKQLEQLILKDGFRAVRFNPYLW 172 (342)
Q Consensus 95 ~~ll~~md~~GI~~~v~~~~~~~~~~N~~~~~~~~~-~p~-r~~g~~~i~p~~~~~~~~eler~~~~~g~~Gvk~~~~~~ 172 (342)
..+++.+.+.|||+.++-. --++.++++ +|+ .+.+-..++-.... .++-+ ++.|+.++.+.+.
T Consensus 79 ~~~l~~l~~~gvDgvIV~d--------~G~l~~~ke~~p~l~ih~stqlni~N~~----a~~f~-~~lG~~rvvLSrE-- 143 (443)
T PRK15452 79 IRDLEPVIAMKPDALIMSD--------PGLIMMVREHFPEMPIHLSVQANAVNWA----TVKFW-QQMGLTRVILSRE-- 143 (443)
T ss_pred HHHHHHHHhCCCCEEEEcC--------HHHHHHHHHhCCCCeEEEEecccCCCHH----HHHHH-HHCCCcEEEECCc--
Confidence 4456677788888876543 235566665 565 34443444554432 33334 5679988887754
Q ss_pred CCCCcCCcHHHHHHHHHHhhhCCeEEEEe
Q 019335 173 PSGQQMTNEVGKAMFSKAGELGVPVGFMC 201 (342)
Q Consensus 173 ~~g~~l~~~~~~~~~~~a~e~~lpv~iH~ 201 (342)
++-.++..+-+.+....+=+++|-
T Consensus 144 -----Lsl~EI~~i~~~~~~~elEvfVHG 167 (443)
T PRK15452 144 -----LSLEEIEEIRQQCPDMELEVFVHG 167 (443)
T ss_pred -----CCHHHHHHHHhhCCCCCEEEEEEc
Confidence 333444544333333444556663
No 420
>cd00419 Ferrochelatase_C Ferrochelatase, C-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is ubiquitous in nature and widely distributed in bacteria and eukaryotes. Recently, some archaeal members have been identified. The oligomeric state of these enzymes varies depending on the presence of a dimerization motif at the C-terminus.
Probab=25.02 E-value=1.7e+02 Score=23.53 Aligned_cols=25 Identities=16% Similarity=0.090 Sum_probs=20.5
Q ss_pred CChHHHHHHhHHCCCceEEEeCCCC
Q 019335 92 GHVDFLLQCMEEASVDGALIVQPIN 116 (342)
Q Consensus 92 ~~~~~ll~~md~~GI~~~v~~~~~~ 116 (342)
.+.++.++.+.+.|+.+.+++++++
T Consensus 77 P~~~~~l~~l~~~G~~~i~v~p~gF 101 (135)
T cd00419 77 PSTDDALEELAKEGVKNVVVVPIGF 101 (135)
T ss_pred CCHHHHHHHHHHcCCCeEEEECCcc
Confidence 4678888888888999999888754
No 421
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=24.96 E-value=1.4e+02 Score=26.85 Aligned_cols=43 Identities=14% Similarity=0.261 Sum_probs=31.3
Q ss_pred HHHHHHHhhhCCeEEEEec-cCCC---CCHHHHHHHHHhCC-CCcEEe
Q 019335 184 KAMFSKAGELGVPVGFMCM-KGLN---LHISEIEELCTEFP-STTVLL 226 (342)
Q Consensus 184 ~~~~~~a~e~~lpv~iH~~-~~~~---~~~~~l~~l~~~~P-~lk~vl 226 (342)
..+.+.++|.|..+.+|+- .+.. ..+..+..++..|| ++++|+
T Consensus 103 n~l~~ll~e~g~~lvvh~vi~gg~~~~dtl~~~~~l~~~~~~~~~~Vv 150 (241)
T PRK13886 103 NQVPALLQDMGHELVVHTVVTGGQALLDTVSGFAQLASQFPAECLFVV 150 (241)
T ss_pred CcHHHHHHHCCceEEEEEEECCCcccHHHHHHHHHHHHHcCCCceEEE
Confidence 3567899999999999964 2211 22455667799999 688887
No 422
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=24.86 E-value=4.2e+02 Score=22.32 Aligned_cols=65 Identities=20% Similarity=0.096 Sum_probs=33.4
Q ss_pred HHHHHHHHHhcCCceEEEecCCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEEeccCCCCCHHHHHHHHH
Q 019335 149 GIKQLEQLILKDGFRAVRFNPYLWPSGQQMTNEVGKAMFSKAGELGVPVGFMCMKGLNLHISEIEELCT 217 (342)
Q Consensus 149 ~~~eler~~~~~g~~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH~~~~~~~~~~~l~~l~~ 217 (342)
..+.++++.+..|-..|.+..+. .|.. +|+...+.-...+.+|+||+.|...- |....++...+.
T Consensus 64 ~~~~~~~l~~~~~~~~v~IvSNs--aGs~-~d~~~~~a~~~~~~lgIpvl~h~~kK-P~~~~~i~~~~~ 128 (168)
T PF09419_consen 64 YAEWLNELKKQFGKDRVLIVSNS--AGSS-DDPDGERAEALEKALGIPVLRHRAKK-PGCFREILKYFK 128 (168)
T ss_pred HHHHHHHHHHHCCCCeEEEEECC--CCcc-cCccHHHHHHHHHhhCCcEEEeCCCC-CccHHHHHHHHh
Confidence 44555555433344456655542 1222 25556666666677788877775422 223334444443
No 423
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=24.85 E-value=5e+02 Score=23.17 Aligned_cols=37 Identities=5% Similarity=0.008 Sum_probs=18.3
Q ss_pred hHHHHHHhHHCCCceEEEeCCCCCccchHHHHHHHHhC
Q 019335 94 VDFLLQCMEEASVDGALIVQPINHKFDHSLVTSVLKKY 131 (342)
Q Consensus 94 ~~~ll~~md~~GI~~~v~~~~~~~~~~N~~~~~~~~~~ 131 (342)
...+++.++..|+.+..++.| ....-|+.+.++.++.
T Consensus 108 ~~A~~~AL~alg~~RIalvTP-Y~~~v~~~~~~~l~~~ 144 (239)
T TIGR02990 108 SSAAVDGLAALGVRRISLLTP-YTPETSRPMAQYFAVR 144 (239)
T ss_pred HHHHHHHHHHcCCCEEEEECC-CcHHHHHHHHHHHHhC
Confidence 344555555556666555544 1122344555555544
No 424
>PLN02187 rooty/superroot1
Probab=24.84 E-value=6.7e+02 Score=24.64 Aligned_cols=49 Identities=22% Similarity=0.279 Sum_probs=34.8
Q ss_pred HHHHHHHHhcCCceEEEe-cCCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEE
Q 019335 150 IKQLEQLILKDGFRAVRF-NPYLWPSGQQMTNEVGKAMFSKAGELGVPVGFM 200 (342)
Q Consensus 150 ~~eler~~~~~g~~Gvk~-~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH 200 (342)
++.|++.+ ..+.+.+-+ +|. .|.|..++.+.++.+.+.|+++|+.|..-
T Consensus 194 ~~~l~~~~-~~~~~~v~i~nP~-NPTG~v~s~e~l~~i~~~a~~~~i~iI~D 243 (462)
T PLN02187 194 LEGIEAIA-DENTVAMVVINPN-NPCGNVYSHDHLKKVAETARKLGIMVISD 243 (462)
T ss_pred HHHHHHhc-CCCcEEEEEeCCC-CCCCCccCHHHHHHHHHHHHHCCCEEEEe
Confidence 45676654 334444443 454 46688888899999999999999988654
No 425
>TIGR03884 sel_bind_Methan selenium-binding protein. This model describes a homopentameric selenium-binding protein with a suggested role in selenium transport and delivery to selenophosphate synthase, the SelD protein. This protein family is closely related to pfam01906, but is shorter because of several deleted regions. It is restricted to the archaeal genus Methanococcus.
Probab=24.77 E-value=1.3e+02 Score=21.72 Aligned_cols=34 Identities=15% Similarity=0.165 Sum_probs=23.3
Q ss_pred EEEEEcCCCCcchHHHHHHHHHhcCC---ceEEEecC
Q 019335 136 VGCCLANPAEDVIGIKQLEQLILKDG---FRAVRFNP 169 (342)
Q Consensus 136 ~g~~~i~p~~~~~~~~eler~~~~~g---~~Gvk~~~ 169 (342)
.+..+.--++++++++++++.++++| ++|+|+..
T Consensus 17 l~iv~~~~~d~d~Al~eM~e~A~~lGAnAVVGvr~d~ 53 (74)
T TIGR03884 17 LGIVSTESDNVDEIVENLREKVKAKGGMGLIAFRITC 53 (74)
T ss_pred EEEEEEecCCHHHHHHHHHHHHHHcCCCEEEEEEEEc
Confidence 34444445577788999888877776 56777764
No 426
>PF12697 Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3LLC_A 3A2N_E 3A2M_A 3A2L_A 3AFI_F 3C5V_A 3C5W_P 3E0X_A 2ZJF_A 3QYJ_A ....
Probab=24.75 E-value=1.3e+02 Score=24.90 Aligned_cols=49 Identities=14% Similarity=0.308 Sum_probs=36.7
Q ss_pred hHHHHHHhHHCCCceEEEeCCCCCccchHHHHHHHHhCCCcEEEEEEcCCCC
Q 019335 94 VDFLLQCMEEASVDGALIVQPINHKFDHSLVTSVLKKYPSKFVGCCLANPAE 145 (342)
Q Consensus 94 ~~~ll~~md~~GI~~~v~~~~~~~~~~N~~~~~~~~~~p~r~~g~~~i~p~~ 145 (342)
.+++.+.+++.+....+++.-+. + -..+..++.++|+++.+++.++|..
T Consensus 53 ~~~l~~~l~~~~~~~~~lvG~S~-G--g~~a~~~a~~~p~~v~~~vl~~~~~ 101 (228)
T PF12697_consen 53 AEDLAELLDALGIKKVILVGHSM-G--GMIALRLAARYPDRVKGLVLLSPPP 101 (228)
T ss_dssp HHHHHHHHHHTTTSSEEEEEETH-H--HHHHHHHHHHSGGGEEEEEEESESS
T ss_pred hhhhhhccccccccccccccccc-c--cccccccccccccccccceeecccc
Confidence 46677788999998888875322 2 3346677788999999999888765
No 427
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=24.66 E-value=4.2e+02 Score=22.18 Aligned_cols=68 Identities=12% Similarity=0.064 Sum_probs=42.3
Q ss_pred CChHHHHHHhHHCCCceEEEeCCC--C-----CccchHHHHHHHHhCCCcEEEEEEcCCCCcchHHHHHHHHHhcCCceE
Q 019335 92 GHVDFLLQCMEEASVDGALIVQPI--N-----HKFDHSLVTSVLKKYPSKFVGCCLANPAEDVIGIKQLEQLILKDGFRA 164 (342)
Q Consensus 92 ~~~~~ll~~md~~GI~~~v~~~~~--~-----~~~~N~~~~~~~~~~p~r~~g~~~i~p~~~~~~~~eler~~~~~g~~G 164 (342)
.+.++ ++.+.+.|+|+..+.+.. . .....+.+.++++..+-.+++.+.|++.+- .++ .+.|+.|
T Consensus 103 h~~~e-~~~a~~~g~dYv~~gpvf~T~sk~~~~~~g~~~l~~~~~~~~~pv~AlGGI~~~~i----~~l----~~~Ga~g 173 (180)
T PF02581_consen 103 HSLEE-AREAEELGADYVFLGPVFPTSSKPGAPPLGLDGLREIARASPIPVYALGGITPENI----PEL----REAGADG 173 (180)
T ss_dssp SSHHH-HHHHHHCTTSEEEEETSS--SSSSS-TTCHHHHHHHHHHHTSSCEEEESS--TTTH----HHH----HHTT-SE
T ss_pred CcHHH-HHHhhhcCCCEEEECCccCCCCCccccccCHHHHHHHHHhCCCCEEEEcCCCHHHH----HHH----HHcCCCE
Confidence 35566 667788999999876521 1 111245667777777767888899998752 344 3558888
Q ss_pred EEec
Q 019335 165 VRFN 168 (342)
Q Consensus 165 vk~~ 168 (342)
|-..
T Consensus 174 vAvi 177 (180)
T PF02581_consen 174 VAVI 177 (180)
T ss_dssp EEES
T ss_pred EEEE
Confidence 7653
No 428
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=24.65 E-value=2.6e+02 Score=25.08 Aligned_cols=105 Identities=11% Similarity=-0.027 Sum_probs=55.0
Q ss_pred CCChHHHHHHhHHCCCceEEEeCCCCCccchHHHHHHHHhCCCcEEEEE--EcCCCC-c-c-hHHHHHHHHHhcCCceEE
Q 019335 91 PGHVDFLLQCMEEASVDGALIVQPINHKFDHSLVTSVLKKYPSKFVGCC--LANPAE-D-V-IGIKQLEQLILKDGFRAV 165 (342)
Q Consensus 91 ~~~~~~ll~~md~~GI~~~v~~~~~~~~~~N~~~~~~~~~~p~r~~g~~--~i~p~~-~-~-~~~~eler~~~~~g~~Gv 165 (342)
..+++.+++...+.|++..++. +..... ..+.. ..+-.+.... ..+... + . ..+.++++.+ +.|..+|
T Consensus 35 ~~~~~~~~~~a~~~~~~~v~~~-p~~~~~----~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~al-~~Ga~~v 107 (258)
T TIGR01949 35 LVDIRKTVNEVAEGGADAVLLH-KGIVRR----GHRGY-GKDVGLIIHLSASTSLSPDPNDKRIVTTVEDAI-RMGADAV 107 (258)
T ss_pred cCCHHHHHHHHHhcCCCEEEeC-cchhhh----ccccc-CCCCcEEEEEcCCCCCCCCCCcceeeeeHHHHH-HCCCCEE
Confidence 3577889999999998776654 422110 11111 1111222111 111111 1 1 1335677775 7798888
Q ss_pred EecCCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEEec
Q 019335 166 RFNPYLWPSGQQMTNEVGKAMFSKAGELGVPVGFMCM 202 (342)
Q Consensus 166 k~~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH~~ 202 (342)
.+.......+..-.-.....+-+.|.++|+|+.+...
T Consensus 108 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~g~~liv~~~ 144 (258)
T TIGR01949 108 SIHVNVGSDTEWEQIRDLGMIAEICDDWGVPLLAMMY 144 (258)
T ss_pred EEEEecCCchHHHHHHHHHHHHHHHHHcCCCEEEEEe
Confidence 7664321111111114567778888999999988643
No 429
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=24.49 E-value=2.6e+02 Score=26.17 Aligned_cols=115 Identities=17% Similarity=0.198 Sum_probs=56.2
Q ss_pred CChHHHHHHh---HHCCCceEEEeCCCCCccchHHHHHHHH---h-CCCcEEEEEEcCCCC--------cchHHHHHHHH
Q 019335 92 GHVDFLLQCM---EEASVDGALIVQPINHKFDHSLVTSVLK---K-YPSKFVGCCLANPAE--------DVIGIKQLEQL 156 (342)
Q Consensus 92 ~~~~~ll~~m---d~~GI~~~v~~~~~~~~~~N~~~~~~~~---~-~p~r~~g~~~i~p~~--------~~~~~~eler~ 156 (342)
-+++++++.+ .+.|+....+..........+++.++++ + .|+ +. +..+.+.+ .-...+.++++
T Consensus 72 ls~eei~~~~~~~~~~G~~~i~l~gG~~p~~~~~~~~~li~~Ik~~~~~-i~-~~~~s~~ei~~~~~~~g~~~~e~l~~L 149 (340)
T TIGR03699 72 LSVEEILQKIEELVAYGGTQILLQGGVNPDLGLDYYEDLFRAIKARFPH-IH-IHSFSPVEIVYIAKKEGLSLREVLERL 149 (340)
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEecCCCCCCCHHHHHHHHHHHHHHCCC-cC-CCCCCHHHHHHHhccCCCCHHHHHHHH
Confidence 4566666544 6789988877643222223455444443 2 232 21 11122110 00013455555
Q ss_pred HhcCCceEEEecC---C---CCC--CCCcCCcHHHHHHHHHHhhhCCeEEEEeccCCCCCH
Q 019335 157 ILKDGFRAVRFNP---Y---LWP--SGQQMTNEVGKAMFSKAGELGVPVGFMCMKGLNLHI 209 (342)
Q Consensus 157 ~~~~g~~Gvk~~~---~---~~~--~g~~l~~~~~~~~~~~a~e~~lpv~iH~~~~~~~~~ 209 (342)
++.|+.-+-... . ... .+...+-..+....+.+.+.|+++..+.--|.....
T Consensus 150 -k~aG~~~~~~~g~E~~~~~~~~~~~~~~~s~~~~l~~i~~a~~~Gi~v~~~~iiGlgEt~ 209 (340)
T TIGR03699 150 -KEAGLDSIPGGGAEILSDRVRKIISPKKISSEEWLEVMETAHKLGLPTTATMMFGHVETL 209 (340)
T ss_pred -HHcCCCcCCCCcccccCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCccceeEeeCCCCH
Confidence 566765442110 0 000 011234456788999999999999877644433433
No 430
>PF03851 UvdE: UV-endonuclease UvdE; InterPro: IPR004601 Schizosaccharomyces pombe ultraviolet damage endonuclease (UVDE or Uve1p) performs the initial step in an alternative excision repair pathway for UV-induced DNA damage. This DNA repair pathway was originally thought to be specific for UV damage, however Uve1p also recognises UV-induced bipyrimidine photoadducts and other non-UV-induced DNA adducts []. The Deinococcus radiodurans UVSE protein has also shown to be a UV DNA damage endonuclease that catalyzes repair of UV-induced DNA damage by a similar mechanism [].; GO: 0004519 endonuclease activity, 0006289 nucleotide-excision repair, 0009411 response to UV; PDB: 3BZG_A 3BZJ_A 3C0L_A 3C0S_A 3C0Q_A.
Probab=24.29 E-value=2.5e+02 Score=25.80 Aligned_cols=21 Identities=19% Similarity=0.499 Sum_probs=10.6
Q ss_pred HHHHHHHHhcCCceEEEecCCC
Q 019335 150 IKQLEQLILKDGFRAVRFNPYL 171 (342)
Q Consensus 150 ~~eler~~~~~g~~Gvk~~~~~ 171 (342)
++++.+.+++.|+| +.+||..
T Consensus 89 l~~iG~~~~~~~iR-ls~HP~q 109 (275)
T PF03851_consen 89 LAEIGDLAKENGIR-LSMHPDQ 109 (275)
T ss_dssp HHHHHHHHHHTT-E-EEE---T
T ss_pred HHHHHHHHHHcCCe-EEecCCc
Confidence 45555566677777 6677763
No 431
>PF01979 Amidohydro_1: Amidohydrolase family; InterPro: IPR006680 This group of enzymes represents a large metal dependent hydrolase superfamily []. The family includes adenine deaminase (3.5.4.2 from EC) that hydrolyses adenine to form hypoxanthine and ammonia. The adenine deaminase reaction is important for adenine utilization as a purine and also as a nitrogen source []. This family also includes dihydroorotase and N-acetylglucosamine-6-phosphate deacetylases (3.5.1.25 from EC). These enzymes catalyse the reaction: N-acetyl-D-glucosamine 6-phosphate + H2O = D-glucosamine 6-phosphate + acetateThis family includes dihydroorotase and urease which belong to MEROPS peptidase family M38 (beta-aspartyl dipeptidase, clan MJ), where they are classified as non-peptidase homologs. ; GO: 0016787 hydrolase activity; PDB: 1O12_A 2KAU_C 1FWD_C 1A5M_C 1FWC_C 1FWI_C 1EJV_C 1FWH_C 1A5L_C 1KRA_C ....
Probab=24.18 E-value=82 Score=28.85 Aligned_cols=29 Identities=24% Similarity=0.346 Sum_probs=22.7
Q ss_pred CcCCcHHHHHHHHHHhh-----h-CCeEEEEeccC
Q 019335 176 QQMTNEVGKAMFSKAGE-----L-GVPVGFMCMKG 204 (342)
Q Consensus 176 ~~l~~~~~~~~~~~a~e-----~-~lpv~iH~~~~ 204 (342)
..+..+.+....+.+.+ . ++++.+|....
T Consensus 139 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~h~~~~ 173 (333)
T PF01979_consen 139 YTVSDEELREAVELAKEFLAAEKLGIPVHIHVAEG 173 (333)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHTHEEEEEESSS
T ss_pred ccchhhhhhhHHhhhhhHHHHHhhcccceeeeccC
Confidence 34566778888888888 3 99999999753
No 432
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=24.12 E-value=2.5e+02 Score=23.41 Aligned_cols=52 Identities=15% Similarity=0.103 Sum_probs=37.0
Q ss_pred CcHHHHHHHHHHhhhCCeEEEEeccCCCCCHHHHHHHHHhC--CCCcEEecccCC
Q 019335 179 TNEVGKAMFSKAGELGVPVGFMCMKGLNLHISEIEELCTEF--PSTTVLLDHLAF 231 (342)
Q Consensus 179 ~~~~~~~~~~~a~e~~lpv~iH~~~~~~~~~~~l~~l~~~~--P~lk~vl~H~G~ 231 (342)
|-+.+...-+.++++|+|....+-.. +..++.+.++++.. .++++||+=.|+
T Consensus 14 D~~~mk~Aa~~L~~fgi~ye~~VvSA-HRTPe~m~~ya~~a~~~g~~viIAgAGg 67 (162)
T COG0041 14 DWDTMKKAAEILEEFGVPYEVRVVSA-HRTPEKMFEYAEEAEERGVKVIIAGAGG 67 (162)
T ss_pred hHHHHHHHHHHHHHcCCCeEEEEEec-cCCHHHHHHHHHHHHHCCCeEEEecCcc
Confidence 34677788888888999988876533 34567777777544 378888887776
No 433
>TIGR03343 biphenyl_bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase. Members of this family are 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase, or HOPD hydrolase, the BphD protein of biphenyl degradation. BphD acts on the product of ring meta-cleavage by BphC. Many species carrying bphC and bphD are capable of degrading polychlorinated biphenyls as well as biphenyl itself.
Probab=24.06 E-value=88 Score=27.78 Aligned_cols=48 Identities=15% Similarity=0.180 Sum_probs=36.3
Q ss_pred hHHHHHHhHHCCCceEEEeCCCCCccchHHHHHHHHhCCCcEEEEEEcCCC
Q 019335 94 VDFLLQCMEEASVDGALIVQPINHKFDHSLVTSVLKKYPSKFVGCCLANPA 144 (342)
Q Consensus 94 ~~~ll~~md~~GI~~~v~~~~~~~~~~N~~~~~~~~~~p~r~~g~~~i~p~ 144 (342)
.+++.+.++..|++..+++.-+.- .-....++.++|+++.+++.+++.
T Consensus 88 ~~~l~~~l~~l~~~~~~lvG~S~G---g~ia~~~a~~~p~~v~~lvl~~~~ 135 (282)
T TIGR03343 88 ARAVKGLMDALDIEKAHLVGNSMG---GATALNFALEYPDRIGKLILMGPG 135 (282)
T ss_pred HHHHHHHHHHcCCCCeeEEEECch---HHHHHHHHHhChHhhceEEEECCC
Confidence 577888999999999988864332 234567778899999888877653
No 434
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=23.97 E-value=2.9e+02 Score=26.32 Aligned_cols=19 Identities=11% Similarity=0.179 Sum_probs=10.8
Q ss_pred hHHHHHHHhcCCCcE--EEcc
Q 019335 278 SPLSQVVSSFGANRV--MWGS 296 (342)
Q Consensus 278 ~~l~~~i~~~G~dRi--lfGS 296 (342)
+...++++..|.|-+ =+||
T Consensus 176 eeA~~Fv~~TgvD~LAvaiGT 196 (347)
T PRK09196 176 EEAADFVKKTQVDALAIAIGT 196 (347)
T ss_pred HHHHHHHHHhCcCeEhhhhcc
Confidence 345566666677755 3454
No 435
>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=23.94 E-value=1.7e+02 Score=28.24 Aligned_cols=50 Identities=24% Similarity=0.191 Sum_probs=39.0
Q ss_pred HHHHHHHHhcCCceEEEecCCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEE
Q 019335 150 IKQLEQLILKDGFRAVRFNPYLWPSGQQMTNEVGKAMFSKAGELGVPVGFM 200 (342)
Q Consensus 150 ~~eler~~~~~g~~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH 200 (342)
.++|++.+.. ..+.|-++.-..|.|..++.+.++.+.+.|.++|+.|..-
T Consensus 153 ~~~l~~~i~~-ktk~i~ln~P~NPTGav~~~~~l~~i~~~a~~~~i~ii~D 202 (393)
T COG0436 153 LEDLEAAITP-KTKAIILNSPNNPTGAVYSKEELKAIVELAREHDIIIISD 202 (393)
T ss_pred HHHHHhhcCc-cceEEEEeCCCCCcCcCCCHHHHHHHHHHHHHcCeEEEEe
Confidence 4678777644 8888888633346788889999999999999999988644
No 436
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=23.91 E-value=7.3e+02 Score=24.72 Aligned_cols=188 Identities=7% Similarity=0.023 Sum_probs=0.0
Q ss_pred CCcchHHHHHHHHHhcCCceEEEecCCCCCCCCcCCcHHHHHHHHHHhhhC-CeEEEEeccCCCCC--HHHHHHHHHhCC
Q 019335 144 AEDVIGIKQLEQLILKDGFRAVRFNPYLWPSGQQMTNEVGKAMFSKAGELG-VPVGFMCMKGLNLH--ISEIEELCTEFP 220 (342)
Q Consensus 144 ~~~~~~~~eler~~~~~g~~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e~~-lpv~iH~~~~~~~~--~~~l~~l~~~~P 220 (342)
..++..++|+++++++.|++-+.+... ...++.+.+.++++.+.+.+ +.+.+.+......- -.++.+++++.
T Consensus 222 rs~e~Vv~Ei~~l~~~~gv~~~~~~Dd----~f~~~~~~~~~l~~~l~~~~~l~i~w~~~~r~~~i~~d~ell~~l~~a- 296 (497)
T TIGR02026 222 RDPKKFVDEIEWLVRTHGVGFFILADE----EPTINRKKFQEFCEEIIARNPISVTWGINTRVTDIVRDADILHLYRRA- 296 (497)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEEec----ccccCHHHHHHHHHHHHhcCCCCeEEEEecccccccCCHHHHHHHHHh-
Q ss_pred CCcEEecccCCCCCCCC-----chhhHhHHHHhcccCCCcEEEecCcccccccCCCCCCCchhHHHHHHHhcCCCcEEEc
Q 019335 221 STTVLLDHLAFCKPPSN-----DEESLAFSNLLKLSRFPQVYVKFSALFRVSRMPFPYQDLSSPLSQVVSSFGANRVMWG 295 (342)
Q Consensus 221 ~lk~vl~H~G~~~p~~~-----~~~~~~~~~~~~l~~~~Nvy~~~S~~~~~~~~~~~~~~~~~~l~~~i~~~G~dRilfG 295 (342)
+++-|.-=.-.+.+... +.......+.+++.+.-.+.+..+-++....+ ..+++...++.+.+. +++.+.|.
T Consensus 297 G~~~v~iGiES~~~~~L~~~~K~~t~~~~~~ai~~l~~~Gi~~~~~~I~G~P~e--t~e~~~~t~~~~~~l-~~~~~~~~ 373 (497)
T TIGR02026 297 GLVHISLGTEAAAQATLDHFRKGTTTSTNKEAIRLLRQHNILSEAQFITGFENE--TDETFEETYRQLLDW-DPDQANWL 373 (497)
T ss_pred CCcEEEEccccCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCcEEEEEEEECCCC--CHHHHHHHHHHHHHc-CCCceEEE
Q ss_pred cCCCCCCCCCChHhHHH-----------HHHHHHhcCCCCHHHHHHHHhHHHHHhc
Q 019335 296 SDFPYVVPECGYKGGRE-----------AASLIANEVPLSPSELEWIMGGTIMQLF 340 (342)
Q Consensus 296 SD~P~~~~~~~~~~~~~-----------~~~~~~~~~~l~~~~~~~I~~~NA~rl~ 340 (342)
.=.|+.... -|....+ ....+++..+++.++....+..+-+++|
T Consensus 374 ~~tP~PGT~-l~~~~~~~~~~~d~~~y~~~~~~~~~~~m~~~El~~~~~~~~~~fy 428 (497)
T TIGR02026 374 MYTPWPFTS-LFGELSDRVEVQDYTKYNFVTPIMKPTHMPRWEILLGVKLNYIRFY 428 (497)
T ss_pred EecCCCCcH-HHHHHHhhcccCchhhccccceEeeCCCCCHHHHHHHHHHHHHHHH
No 437
>TIGR02810 agaZ_gatZ D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit. Aldolases specific for D-tagatose-bisphosphate occur in distinct pathways in Escherichia coli and other bacteria, one for the degradation of galactitol (formerly dulcitol) and one for degradation of N-acetyl-galactosamine and D-galactosamine. This family represents a protein of both systems that behaves as a non-catalytic subunit of D-tagatose-bisphosphate aldolase, required both for full activity and for good stability of the aldolase. Note that members of this protein family appear in public databases annotated as putative tagatose 6-phosphate kinases, possibly in error.
Probab=23.88 E-value=6.9e+02 Score=24.44 Aligned_cols=121 Identities=17% Similarity=0.215 Sum_probs=59.5
Q ss_pred HHHHHHHHHhhhCCeEEEEecc-------CC-CCCHHHHH----HHHHh--CCC--CcEEecccCCCCCCCCchhhHhH-
Q 019335 182 VGKAMFSKAGELGVPVGFMCMK-------GL-NLHISEIE----ELCTE--FPS--TTVLLDHLAFCKPPSNDEESLAF- 244 (342)
Q Consensus 182 ~~~~~~~~a~e~~lpv~iH~~~-------~~-~~~~~~l~----~l~~~--~P~--lk~vl~H~G~~~p~~~~~~~~~~- 244 (342)
..+..++.+.+.|.||+|-... |. +..+.++. +++++ ||. +-+.-+|+|- .+|..-....+-
T Consensus 25 VieAAl~~a~~~~~pvLiEAT~NQVnq~GGYTGmtP~dF~~~V~~iA~~~gf~~~~iiLggDHlGP-n~Wq~lpa~eAM~ 103 (420)
T TIGR02810 25 VLEAAIRRARASGTPVLIEATSNQVNQFGGYTGMTPADFRDFVETIADRIGFPRDRLILGGDHLGP-NPWQHLPADEAMA 103 (420)
T ss_pred HHHHHHHHHhhcCCcEEEEeccccccccCCcCCCCHHHHHHHHHHHHHHcCCChhcEEeecCCCCC-ccccCCCHHHHHH
Confidence 5567788888888888876531 11 23344443 34433 664 3344578873 223221111111
Q ss_pred --HHHh-c--ccCCCcEEEecCcccccccCCCCCCCc----hhHHH---HHH-HhcCCCcE--EEccCCCCCCC
Q 019335 245 --SNLL-K--LSRFPQVYVKFSALFRVSRMPFPYQDL----SSPLS---QVV-SSFGANRV--MWGSDFPYVVP 303 (342)
Q Consensus 245 --~~~~-~--l~~~~Nvy~~~S~~~~~~~~~~~~~~~----~~~l~---~~i-~~~G~dRi--lfGSD~P~~~~ 303 (342)
+++. . .+.+..+.+|.|.-........+.+.+ .++.+ +.. +.+|...+ +.||.-|....
T Consensus 104 ~A~~li~ayV~AGF~kIHLD~Sm~ca~d~~~L~d~~vAeRaa~L~~~aE~~~~~~~~~~~~vYvIGTEvP~pGG 177 (420)
T TIGR02810 104 KAAALVDAYVEAGFTKIHLDASMGCAGDPAPLDDATVAERAARLCAVAEAAATDRRGETKPVYVIGTEVPVPGG 177 (420)
T ss_pred HHHHHHHHHHHcCCceEEecCCCCccCCCccCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEeccccCCCCc
Confidence 1222 2 246888999999642222111111111 11222 211 24465555 45999988754
No 438
>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional
Probab=23.78 E-value=2.1e+02 Score=27.84 Aligned_cols=50 Identities=24% Similarity=0.203 Sum_probs=35.8
Q ss_pred HHHHHHHHhcCCceEEEe-cCCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEEe
Q 019335 150 IKQLEQLILKDGFRAVRF-NPYLWPSGQQMTNEVGKAMFSKAGELGVPVGFMC 201 (342)
Q Consensus 150 ~~eler~~~~~g~~Gvk~-~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH~ 201 (342)
++.+++.+. ...+.+-+ +|. .|.|..++.+.++.+.+.|+++|++|..--
T Consensus 180 ~~~l~~~~~-~~~~~i~i~~P~-NPtG~v~~~~~l~~i~~~a~~~~i~ii~De 230 (430)
T PLN00145 180 LEGVEALAD-ENTVAMVIINPN-NPCGSVYSYEHLAKIAETARKLGILVIADE 230 (430)
T ss_pred HHHHHHHhC-cCceEEEEeCCC-CCCCCCCCHHHHHHHHHHHHHcCCEEEEec
Confidence 466777653 34455543 454 466788888999999999999999987653
No 439
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=23.75 E-value=2.2e+02 Score=23.79 Aligned_cols=52 Identities=13% Similarity=0.080 Sum_probs=38.1
Q ss_pred CcHHHHHHHHHHhhhCCeEEEEeccCCCCCHHHHHHHHHhCC--CCcEEecccCC
Q 019335 179 TNEVGKAMFSKAGELGVPVGFMCMKGLNLHISEIEELCTEFP--STTVLLDHLAF 231 (342)
Q Consensus 179 ~~~~~~~~~~~a~e~~lpv~iH~~~~~~~~~~~l~~l~~~~P--~lk~vl~H~G~ 231 (342)
|-+..++..+.++++|++..+.+... +..+..+.++++.+. +.+++++=.|.
T Consensus 10 D~~~~~~a~~~L~~~gi~~dv~V~Sa-HRtp~~~~~~~~~a~~~g~~viIa~AG~ 63 (156)
T TIGR01162 10 DLPTMKKAADILEEFGIPYELRVVSA-HRTPELMLEYAKEAEERGIKVIIAGAGG 63 (156)
T ss_pred hHHHHHHHHHHHHHcCCCeEEEEECc-ccCHHHHHHHHHHHHHCCCeEEEEeCCc
Confidence 45778888888999999988876532 355777888877654 56777776665
No 440
>PRK07550 hypothetical protein; Provisional
Probab=23.72 E-value=4.3e+02 Score=24.96 Aligned_cols=50 Identities=22% Similarity=0.264 Sum_probs=34.6
Q ss_pred HHHHHHHHhcCCceEEEe-cCCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEEe
Q 019335 150 IKQLEQLILKDGFRAVRF-NPYLWPSGQQMTNEVGKAMFSKAGELGVPVGFMC 201 (342)
Q Consensus 150 ~~eler~~~~~g~~Gvk~-~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH~ 201 (342)
.+++++.++ ...+.|-+ +|. .|.|..+..+.++.+.+.|+++|++|..-.
T Consensus 153 ~~~l~~~~~-~~~~~v~~~~P~-NPtG~~~~~~~~~~i~~~~~~~~~~iI~Dd 203 (386)
T PRK07550 153 PAAAEALIT-PRTRAIALVTPN-NPTGVVYPPELLHELYDLARRHGIALILDE 203 (386)
T ss_pred HHHHHHHhc-ccCcEEEEeCCC-CCCCcccCHHHHHHHHHHHHHcCeEEEEec
Confidence 466777654 35555443 443 356777888889999999999998886554
No 441
>PRK07682 hypothetical protein; Validated
Probab=23.69 E-value=6.1e+02 Score=23.76 Aligned_cols=49 Identities=16% Similarity=0.125 Sum_probs=33.8
Q ss_pred HHHHHHHHhcCCceEEEe-cCCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEE
Q 019335 150 IKQLEQLILKDGFRAVRF-NPYLWPSGQQMTNEVGKAMFSKAGELGVPVGFM 200 (342)
Q Consensus 150 ~~eler~~~~~g~~Gvk~-~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH 200 (342)
.+++++.+ ..+.+.+-+ +|. .|.|..+..+.+..+.+.|.++++.+.+-
T Consensus 144 ~~~l~~~~-~~~~~~v~~~~p~-NPtG~~~s~~~~~~l~~~~~~~~~~ii~D 193 (378)
T PRK07682 144 PAQIEAAI-TAKTKAILLCSPN-NPTGAVLNKSELEEIAVIVEKHDLIVLSD 193 (378)
T ss_pred HHHHHhhc-CcccEEEEEECCC-CCcCcCcCHHHHHHHHHHHHHcCcEEEEe
Confidence 45676654 335666643 333 35677788888999999999999887654
No 442
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=23.68 E-value=5.5e+02 Score=23.18 Aligned_cols=112 Identities=13% Similarity=-0.022 Sum_probs=70.9
Q ss_pred CChHHHHHHhHHCCCceEEE-eCCCCCccchHHHHHHHHhCCCcEEEEEEcCCCCcchHHHHHHHHHhcCCceEEEecCC
Q 019335 92 GHVDFLLQCMEEASVDGALI-VQPINHKFDHSLVTSVLKKYPSKFVGCCLANPAEDVIGIKQLEQLILKDGFRAVRFNPY 170 (342)
Q Consensus 92 ~~~~~ll~~md~~GI~~~v~-~~~~~~~~~N~~~~~~~~~~p~r~~g~~~i~p~~~~~~~~eler~~~~~g~~Gvk~~~~ 170 (342)
.++.++.+.+.+.|....-+ ..+...+-+.+++....+... .++..=|.--. ..++.+. ...|.-+|-+...
T Consensus 61 ~d~~~~A~~y~~~GA~aISVlTe~~~F~Gs~~~l~~v~~~v~---~PvL~KDFIid---~~QI~ea-~~~GADavLLI~~ 133 (247)
T PRK13957 61 YHPVQIAKTYETLGASAISVLTDQSYFGGSLEDLKSVSSELK---IPVLRKDFILD---EIQIREA-RAFGASAILLIVR 133 (247)
T ss_pred CCHHHHHHHHHHCCCcEEEEEcCCCcCCCCHHHHHHHHHhcC---CCEEeccccCC---HHHHHHH-HHcCCCEEEeEHh
Confidence 46778888999999866544 344445556677776665431 12211111111 1356555 3579999976643
Q ss_pred CCCCCCcCCcHHHHHHHHHHhhhCCeEEEEeccCCCCCHHHHHHHHHhCCC
Q 019335 171 LWPSGQQMTNEVGKAMFSKAGELGVPVGFMCMKGLNLHISEIEELCTEFPS 221 (342)
Q Consensus 171 ~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH~~~~~~~~~~~l~~l~~~~P~ 221 (342)
.+++..+..+++.|.++|+-+++-+++ ..++...++.-++
T Consensus 134 ------~L~~~~l~~l~~~a~~lGle~LVEVh~-----~~El~~a~~~ga~ 173 (247)
T PRK13957 134 ------ILTPSQIKSFLKHASSLGMDVLVEVHT-----EDEAKLALDCGAE 173 (247)
T ss_pred ------hCCHHHHHHHHHHHHHcCCceEEEECC-----HHHHHHHHhCCCC
Confidence 356678999999999999998877653 3566666664443
No 443
>PLN00175 aminotransferase family protein; Provisional
Probab=23.67 E-value=5e+02 Score=25.00 Aligned_cols=50 Identities=22% Similarity=0.102 Sum_probs=35.7
Q ss_pred HHHHHHHHhcCCceEEEecCCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEE
Q 019335 150 IKQLEQLILKDGFRAVRFNPYLWPSGQQMTNEVGKAMFSKAGELGVPVGFM 200 (342)
Q Consensus 150 ~~eler~~~~~g~~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH 200 (342)
.++|++.+ ..+.+.|-+.....|.|..++.+.++.+.+.|+++|+.|..-
T Consensus 177 ~~~l~~~~-~~~~k~i~i~~p~NPtG~~~s~~~l~~l~~~a~~~~~~ii~D 226 (413)
T PLN00175 177 EDELKAAF-TSKTRAILINTPHNPTGKMFTREELELIASLCKENDVLAFTD 226 (413)
T ss_pred HHHHHHhc-CcCceEEEecCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEe
Confidence 46777765 346677655322235677888889999999999999887654
No 444
>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase. This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=23.61 E-value=1.9e+02 Score=27.53 Aligned_cols=48 Identities=13% Similarity=0.190 Sum_probs=32.7
Q ss_pred HHHHHHHHhcCCceEEEec-CCCCCCCCcCCcHHHHHHHHHHhhhCCeEEE
Q 019335 150 IKQLEQLILKDGFRAVRFN-PYLWPSGQQMTNEVGKAMFSKAGELGVPVGF 199 (342)
Q Consensus 150 ~~eler~~~~~g~~Gvk~~-~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~i 199 (342)
.+++++.+. .+.+.|-+. |. .|.|..++.++++.+.+.|+++++.|..
T Consensus 155 ~~~l~~~~~-~~~k~i~l~~p~-NPtG~~~s~~~~~~l~~~a~~~~~~ii~ 203 (393)
T TIGR03538 155 FDAVPESVW-RRCQLLFVCSPG-NPTGAVLSLDTLKKLIELADQYGFIIAS 203 (393)
T ss_pred HHHHHHHHh-hcceEEEEeCCC-CCcCcccCHHHHHHHHHHHHHCCEEEEE
Confidence 356665542 255665443 32 3667788888999999999999987754
No 445
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=23.57 E-value=1.2e+02 Score=25.45 Aligned_cols=21 Identities=10% Similarity=0.211 Sum_probs=15.4
Q ss_pred CChHHHHHHhHHCCCceEEEe
Q 019335 92 GHVDFLLQCMEEASVDGALIV 112 (342)
Q Consensus 92 ~~~~~ll~~md~~GI~~~v~~ 112 (342)
...+.+++.+++.||+..|.+
T Consensus 27 ~~~~~~l~~L~~~gI~~Iv~l 47 (166)
T PTZ00242 27 SNLPLYIKELQRYNVTHLVRV 47 (166)
T ss_pred ccHHHHHHHHHhCCCeEEEec
Confidence 456677788888888877754
No 446
>TIGR03365 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. This uncharacterized enzyme, designated QueE, participates in the biosynthesis, from GTP, of 7-cyano-7-deazaguanosine, also called preQ0 because in many species it is a precursor of queuosine. In most Archaea, it is instead the precursor of a different tRNA modified base, archaeosine.
Probab=23.53 E-value=1.7e+02 Score=26.06 Aligned_cols=48 Identities=10% Similarity=0.011 Sum_probs=34.3
Q ss_pred HHHHHHHHHhcCCceEEEecCCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEEec
Q 019335 149 GIKQLEQLILKDGFRAVRFNPYLWPSGQQMTNEVGKAMFSKAGELGVPVGFMCM 202 (342)
Q Consensus 149 ~~~eler~~~~~g~~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH~~ 202 (342)
.++.+++. ...|...|.+.. |..+-++.+.++.+.+.+.|+.+.+.+.
T Consensus 61 i~~~i~~~-~~~~~~~V~lTG-----GEPll~~~l~~li~~l~~~g~~v~leTN 108 (238)
T TIGR03365 61 VWQELKAL-GGGTPLHVSLSG-----GNPALQKPLGELIDLGKAKGYRFALETQ 108 (238)
T ss_pred HHHHHHHH-hCCCCCeEEEeC-----CchhhhHhHHHHHHHHHHCCCCEEEECC
Confidence 44455544 244577777664 5666667899999999999999988764
No 447
>COG3033 TnaA Tryptophanase [Amino acid transport and metabolism]
Probab=23.48 E-value=2e+02 Score=27.75 Aligned_cols=54 Identities=24% Similarity=0.285 Sum_probs=39.1
Q ss_pred chHHHHHHHHHhcCCceEE---E--ecCCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEEe
Q 019335 147 VIGIKQLEQLILKDGFRAV---R--FNPYLWPSGQQMTNEVGKAMFSKAGELGVPVGFMC 201 (342)
Q Consensus 147 ~~~~~eler~~~~~g~~Gv---k--~~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH~ 201 (342)
+-.++.|++.+++-|.--| . +..+. ..|+...-+.++.+.+.|.++++||.+..
T Consensus 168 d~D~~kLe~lidevG~~nvp~I~~tiT~Ns-agGQpVSm~n~r~v~~ia~ky~ipvv~Da 226 (471)
T COG3033 168 NFDLEKLERLIDEVGADNVPYIVLTITNNS-AGGQPVSMANMKAVYEIAKKYDIPVVMDA 226 (471)
T ss_pred ccCHHHHHHHHHHhCcccCcEEEEEEeccc-cCCCcchHHhHHHHHHHHHHcCCcEEeeh
Confidence 3457899999887765433 2 22221 23677777889999999999999998875
No 448
>COG0218 Predicted GTPase [General function prediction only]
Probab=23.47 E-value=1.2e+02 Score=26.50 Aligned_cols=63 Identities=17% Similarity=0.117 Sum_probs=39.5
Q ss_pred EEEEEcCCCCcchHHHHHHHHHhc-CCceEEEecCCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEEec
Q 019335 136 VGCCLANPAEDVIGIKQLEQLILK-DGFRAVRFNPYLWPSGQQMTNEVGKAMFSKAGELGVPVGFMCM 202 (342)
Q Consensus 136 ~g~~~i~p~~~~~~~~eler~~~~-~g~~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH~~ 202 (342)
+|++.++....+.+-+.++++++. ..++|+-+.... ..+..-.| ..+++.+.++|+|+.+-..
T Consensus 80 YGyAkv~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~-r~~~~~~D---~em~~~l~~~~i~~~vv~t 143 (200)
T COG0218 80 YGYAKVPKEVKEKWKKLIEEYLEKRANLKGVVLLIDA-RHPPKDLD---REMIEFLLELGIPVIVVLT 143 (200)
T ss_pred cccccCCHHHHHHHHHHHHHHHhhchhheEEEEEEEC-CCCCcHHH---HHHHHHHHHcCCCeEEEEE
Confidence 356666665555566788888754 357777654432 11111112 3889999999999987654
No 449
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=23.40 E-value=1.2e+02 Score=28.86 Aligned_cols=69 Identities=19% Similarity=0.271 Sum_probs=41.8
Q ss_pred HHHHHHHHHhcCCceEEEecCCCC----CCCCcCCcHHHHHHHHHHhhhCCeEEEEeccCCCCCHHHHHHHHHhCCCCc
Q 019335 149 GIKQLEQLILKDGFRAVRFNPYLW----PSGQQMTNEVGKAMFSKAGELGVPVGFMCMKGLNLHISEIEELCTEFPSTT 223 (342)
Q Consensus 149 ~~~eler~~~~~g~~Gvk~~~~~~----~~g~~l~~~~~~~~~~~a~e~~lpv~iH~~~~~~~~~~~l~~l~~~~P~lk 223 (342)
..+.++.+ ++.|+.-|++....| |.....+-..++.+++.|+++|+.|.+-+... ..+. =+.+++|++.
T Consensus 12 ~~~d~~~m-~~~G~n~vri~~~~W~~lEP~eG~ydF~~lD~~l~~a~~~Gi~viL~~~~~---~~P~--Wl~~~~Pe~~ 84 (374)
T PF02449_consen 12 WEEDLRLM-KEAGFNTVRIGEFSWSWLEPEEGQYDFSWLDRVLDLAAKHGIKVILGTPTA---APPA--WLYDKYPEIL 84 (374)
T ss_dssp HHHHHHHH-HHHT-SEEEE-CCEHHHH-SBTTB---HHHHHHHHHHHCTT-EEEEEECTT---TS-H--HHHCCSGCCC
T ss_pred HHHHHHHH-HHcCCCEEEEEEechhhccCCCCeeecHHHHHHHHHHHhccCeEEEEeccc---cccc--chhhhccccc
Confidence 34455555 788999999764322 33445677889999999999999999877532 1122 2246788764
No 450
>PRK09526 lacI lac repressor; Reviewed
Probab=23.40 E-value=5.7e+02 Score=23.32 Aligned_cols=128 Identities=9% Similarity=0.046 Sum_probs=59.7
Q ss_pred HHHHHHhHHCCCceEEEeCCCCCccchHHHHHHHH---hCCCcEEEE------EEcCCCCcchHHHHHHHHHhcCCceEE
Q 019335 95 DFLLQCMEEASVDGALIVQPINHKFDHSLVTSVLK---KYPSKFVGC------CLANPAEDVIGIKQLEQLILKDGFRAV 165 (342)
Q Consensus 95 ~~ll~~md~~GI~~~v~~~~~~~~~~N~~~~~~~~---~~p~r~~g~------~~i~p~~~~~~~~eler~~~~~g~~Gv 165 (342)
.++++.+...+|++.|+..+.. .+.+..+.+ ..|=.++.. ..|..++.+ +..++-+++.+.|.+=|
T Consensus 110 ~~~l~~l~~~~vdGiii~~~~~----~~~~~~~~~~~~~iPvV~~d~~~~~~~~~V~~d~~~-~~~~a~~~L~~~G~~~I 184 (342)
T PRK09526 110 QAAVNELLAQRVSGVIINVPLE----DADAEKIVADCADVPCLFLDVSPQSPVNSVSFDPED-GTRLGVEHLVELGHQRI 184 (342)
T ss_pred HHHHHHHHhcCCCEEEEecCCC----cchHHHHHhhcCCCCEEEEeccCCCCCCEEEECcHH-HHHHHHHHHHHCCCCeE
Confidence 3567778888999988753311 112222222 122111111 111122222 33333333345676655
Q ss_pred EecCCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEEeccCCC--CCHHHHHHHHHhCCCCcEEeccc
Q 019335 166 RFNPYLWPSGQQMTNEVGKAMFSKAGELGVPVGFMCMKGLN--LHISEIEELCTEFPSTTVLLDHL 229 (342)
Q Consensus 166 k~~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH~~~~~~--~~~~~l~~l~~~~P~lk~vl~H~ 229 (342)
-+.... .+......+...+-+.++++|+++......... .....+..+++..|....|++..
T Consensus 185 ~~l~g~--~~~~~~~~R~~Gf~~al~~~gi~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~ 248 (342)
T PRK09526 185 ALLAGP--ESSVSARLRLAGWLEYLTDYQLQPIAVREGDWSAMSGYQQTLQMLREGPVPSAILVAN 248 (342)
T ss_pred EEEeCC--CccccHHHHHHHHHHHHHHcCCCcceEEeCCCchHHHHHHHHHHhcCCCCCcEEEEcC
Confidence 544221 122223457778888888899875321111100 01234566666666666666543
No 451
>PRK15481 transcriptional regulatory protein PtsJ; Provisional
Probab=23.34 E-value=2.8e+02 Score=26.83 Aligned_cols=49 Identities=24% Similarity=0.293 Sum_probs=32.7
Q ss_pred HHHHHHHHhcCCceEEEecCCC-CCCCCcCCcHHHHHHHHHHhhh-CCeEEE
Q 019335 150 IKQLEQLILKDGFRAVRFNPYL-WPSGQQMTNEVGKAMFSKAGEL-GVPVGF 199 (342)
Q Consensus 150 ~~eler~~~~~g~~Gvk~~~~~-~~~g~~l~~~~~~~~~~~a~e~-~lpv~i 199 (342)
.++|++.+. .+.+.+-+.|.. .|.|..++.++.+.+.+.|+++ ++.|..
T Consensus 201 ~~~l~~~~~-~~~k~i~~~p~p~NPTG~~~s~~~~~~l~~la~~~~~~~ii~ 251 (431)
T PRK15481 201 PEKLERALA-QGARAVILTPRAHNPTGCSLSARRAAALRNLLARYPQVLVII 251 (431)
T ss_pred HHHHHHHHh-cCCCEEEECCCCCCCCCccCCHHHHHHHHHHHHhcCCceEEe
Confidence 466766653 356666555432 2567778888888888888888 766653
No 452
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=23.32 E-value=9.7e+02 Score=25.93 Aligned_cols=102 Identities=15% Similarity=0.202 Sum_probs=57.5
Q ss_pred HHHHHHhHHCCCceEEEeCCCCCccchHHHHHHHHhCCCcEE--EEE----EcCCCCcch----HHHHHHHHHhcCCc--
Q 019335 95 DFLLQCMEEASVDGALIVQPINHKFDHSLVTSVLKKYPSKFV--GCC----LANPAEDVI----GIKQLEQLILKDGF-- 162 (342)
Q Consensus 95 ~~ll~~md~~GI~~~v~~~~~~~~~~N~~~~~~~~~~p~r~~--g~~----~i~p~~~~~----~~~eler~~~~~g~-- 162 (342)
.+.+++..+.|||-.=++..-.+-...+-..+.+++.. ++. .+| .+||..+.- .++..+++ .+.|.
T Consensus 633 ~~Fvkqaa~~GIDvFRiFDsLNwv~~M~vaidAV~e~g-kv~EatiCYTGDildp~r~kY~L~YY~~lA~el-~~~GaHI 710 (1149)
T COG1038 633 REFVKQAAKSGIDVFRIFDSLNWVEQMRVAIDAVREAG-KVAEATICYTGDILDPGRKKYTLDYYVKLAKEL-EKAGAHI 710 (1149)
T ss_pred HHHHHHHHhcCccEEEeehhhcchhhhhhHHHHHHhcC-CeEEEEEEeccccCCCCcccccHHHHHHHHHHH-HhcCCcE
Confidence 55566777889998888876444433444566666654 454 233 246655431 11222222 33454
Q ss_pred eEEEecCCCCCCCCcCCcHHHHHHHHHHhh-hCCeEEEEeccC
Q 019335 163 RAVRFNPYLWPSGQQMTNEVGKAMFSKAGE-LGVPVGFMCMKG 204 (342)
Q Consensus 163 ~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e-~~lpv~iH~~~~ 204 (342)
-|||-+... |.-.....++..+.+ .++||.+|+++.
T Consensus 711 laIKDMAGL------LKP~AA~~Li~aLr~~~dlPIHlHTHDT 747 (1149)
T COG1038 711 LAIKDMAGL------LKPAAAYRLISALRETVDLPIHLHTHDT 747 (1149)
T ss_pred EEehhhhhc------cCHHHHHHHHHHHHHhcCCceEEeccCC
Confidence 466543221 222345666666655 799999999865
No 453
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=23.29 E-value=4.4e+02 Score=21.90 Aligned_cols=83 Identities=18% Similarity=0.274 Sum_probs=48.7
Q ss_pred HHHHHHHHHhcCCceEEEecCCC--CCCCC---cCC------cHHHHHHHHHHhhhCCeEEE-Eec---cCCCC------
Q 019335 149 GIKQLEQLILKDGFRAVRFNPYL--WPSGQ---QMT------NEVGKAMFSKAGELGVPVGF-MCM---KGLNL------ 207 (342)
Q Consensus 149 ~~~eler~~~~~g~~Gvk~~~~~--~~~g~---~l~------~~~~~~~~~~a~e~~lpv~i-H~~---~~~~~------ 207 (342)
..+++.+.+++.|+.=..+++.. ..... .-. ...+...++.|+++|..... |.+ .....
T Consensus 28 ~~~~~~~~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~ 107 (213)
T PF01261_consen 28 EAEELRRLLEDYGLKIASLHPPTNFWSPDEENGSANDEREEALEYLKKAIDLAKRLGAKYIVVHSGRYPSGPEDDTEENW 107 (213)
T ss_dssp HHHHHHHHHHHTTCEEEEEEEEESSSCTGTTSTTSSSHHHHHHHHHHHHHHHHHHHTBSEEEEECTTESSSTTSSHHHHH
T ss_pred HHHHHHHHHHHcCCeEEEEecccccccccccccCcchhhHHHHHHHHHHHHHHHHhCCCceeecCcccccccCCCHHHHH
Confidence 46788888888888744333221 10000 111 35788899999999988744 434 11111
Q ss_pred -----CHHHHHHHHHhCCCCcEEecccCCC
Q 019335 208 -----HISEIEELCTEFPSTTVLLDHLAFC 232 (342)
Q Consensus 208 -----~~~~l~~l~~~~P~lk~vl~H~G~~ 232 (342)
.+..+.+.++++ ++++++...+..
T Consensus 108 ~~~~~~l~~l~~~a~~~-gv~i~lE~~~~~ 136 (213)
T PF01261_consen 108 ERLAENLRELAEIAEEY-GVRIALENHPGP 136 (213)
T ss_dssp HHHHHHHHHHHHHHHHH-TSEEEEE-SSSS
T ss_pred HHHHHHHHHHHhhhhhh-cceEEEecccCc
Confidence 123566777777 688888766653
No 454
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=23.26 E-value=5.2e+02 Score=23.86 Aligned_cols=60 Identities=15% Similarity=0.304 Sum_probs=39.7
Q ss_pred HHHHHHHHh-cCCceEEEecCCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEEeccCCCCCHHHHHHHHHhC
Q 019335 150 IKQLEQLIL-KDGFRAVRFNPYLWPSGQQMTNEVGKAMFSKAGELGVPVGFMCMKGLNLHISEIEELCTEF 219 (342)
Q Consensus 150 ~~eler~~~-~~g~~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH~~~~~~~~~~~l~~l~~~~ 219 (342)
-+.++++++ ...+.+|.+.... |-..+..++++|.++++||.|-... .++..+..++++.
T Consensus 136 KE~vR~~I~~A~kVIAIVMD~FT-------D~dIf~DLleAa~kR~VpVYiLLD~---~~~~~Fl~Mc~~~ 196 (284)
T PF07894_consen 136 KEVVRRMIQQAQKVIAIVMDVFT-------DVDIFCDLLEAANKRGVPVYILLDE---QNLPHFLEMCEKL 196 (284)
T ss_pred HHHHHHHHHHhcceeEEEeeccc-------cHHHHHHHHHHHHhcCCcEEEEech---hcChHHHHHHHHC
Confidence 345555664 3466777655321 3357888999999999999887653 3456677777754
No 455
>PLN02965 Probable pheophorbidase
Probab=23.04 E-value=1.7e+02 Score=25.80 Aligned_cols=48 Identities=19% Similarity=0.146 Sum_probs=34.1
Q ss_pred hHHHHHHhHHCCCc-eEEEeCCCCCccchHHHHHHHHhCCCcEEEEEEcCCC
Q 019335 94 VDFLLQCMEEASVD-GALIVQPINHKFDHSLVTSVLKKYPSKFVGCCLANPA 144 (342)
Q Consensus 94 ~~~ll~~md~~GI~-~~v~~~~~~~~~~N~~~~~~~~~~p~r~~g~~~i~p~ 144 (342)
.+++.+.+++.++. .++++.-|.-+ --..+++.++|+++.+++.+++.
T Consensus 58 a~dl~~~l~~l~~~~~~~lvGhSmGG---~ia~~~a~~~p~~v~~lvl~~~~ 106 (255)
T PLN02965 58 NRPLFALLSDLPPDHKVILVGHSIGG---GSVTEALCKFTDKISMAIYVAAA 106 (255)
T ss_pred HHHHHHHHHhcCCCCCEEEEecCcch---HHHHHHHHhCchheeEEEEEccc
Confidence 35567788888885 78887654332 23567778899999988877754
No 456
>TIGR03820 lys_2_3_AblA lysine-2,3-aminomutase. This model describes lysine-2,3-aminomutase as found along with beta-lysine acetyltransferase in a two-enzyme pathway for making the compatible solute N-epsilon-acetyl-beta-lysine. This compatible solute, or osmolyte, is known to protect a number of methanogenic archaea against salt stress. The trusted cutoff distinguishes a tight clade with essentially full-length homology from additional homologs that are shorter or highly diverged in the C-terminal region. All members of this family have the radical SAM motif CXXXCXXC, while some but not all have a second copy of the motif in the C-terminal region.
Probab=22.98 E-value=7.2e+02 Score=24.34 Aligned_cols=119 Identities=13% Similarity=0.189 Sum_probs=63.9
Q ss_pred hHHHHHHhHH-CCCceEEEeCCCCC-ccc--hHHHHHHHHhCCC-cEEEEE----EcCCCCcchHHHHHHHHHhcCCceE
Q 019335 94 VDFLLQCMEE-ASVDGALIVQPINH-KFD--HSLVTSVLKKYPS-KFVGCC----LANPAEDVIGIKQLEQLILKDGFRA 164 (342)
Q Consensus 94 ~~~ll~~md~-~GI~~~v~~~~~~~-~~~--N~~~~~~~~~~p~-r~~g~~----~i~p~~~~~~~~eler~~~~~g~~G 164 (342)
.+..++...+ .+|...++.+..+. ..+ -+++++..++.|. +.+.+. ++-|.... +++-+.+++.+..-
T Consensus 143 i~~~i~yI~~~p~I~~VlLSGGDPLll~d~~L~~iL~~L~~IphV~~IRI~TR~pvv~P~RIT---~ell~~Lk~~~~~~ 219 (417)
T TIGR03820 143 ILEGIEYIRNTPQIRDVLLSGGDPLLLSDDYLDWILTELRAIPHVEVIRIGTRVPVVLPQRIT---DELVAILKKHHPVW 219 (417)
T ss_pred HHHHHHHHHhcCCCCEEEEeCCccccCChHHHHHHHHHHhhcCCCceEEEeeccccccccccC---HHHHHHHHhcCCeE
Confidence 3445555555 48988777665332 222 2455666667775 222232 22243321 22333334556555
Q ss_pred EEecCCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEEec--cCCCCCHHHHHHHHHhC
Q 019335 165 VRFNPYLWPSGQQMTNEVGKAMFSKAGELGVPVGFMCM--KGLNLHISEIEELCTEF 219 (342)
Q Consensus 165 vk~~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH~~--~~~~~~~~~l~~l~~~~ 219 (342)
|.++.+. + ..+ .+....-++++.+.|+++..++. .|.......+..+.++.
T Consensus 220 v~~h~nh-p--~Ei-t~~a~~Al~~L~~aGI~l~nQsVLLkGVND~~~~l~~L~~~L 272 (417)
T TIGR03820 220 LNTHFNH-P--REI-TASSKKALAKLADAGIPLGNQSVLLAGVNDCPRIMKKLVHKL 272 (417)
T ss_pred EEEeCCC-h--HhC-hHHHHHHHHHHHHcCCEEEeeceEECCcCCCHHHHHHHHHHH
Confidence 6655442 1 223 46777888899999999988763 23333445555555554
No 457
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=22.82 E-value=7.8e+02 Score=24.65 Aligned_cols=16 Identities=19% Similarity=0.067 Sum_probs=11.3
Q ss_pred HHHHHhHHCCCceEEE
Q 019335 96 FLLQCMEEASVDGALI 111 (342)
Q Consensus 96 ~ll~~md~~GI~~~v~ 111 (342)
.+.+.+++.||+..=+
T Consensus 27 ~ia~~L~~~GV~~IEv 42 (494)
T TIGR00973 27 QIALALERLGVDIIEA 42 (494)
T ss_pred HHHHHHHHcCCCEEEE
Confidence 3455788899987754
No 458
>COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=22.81 E-value=1.8e+02 Score=26.36 Aligned_cols=48 Identities=17% Similarity=0.143 Sum_probs=35.7
Q ss_pred HHHHHHHhc-CCceEEEecCCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEEec
Q 019335 151 KQLEQLILK-DGFRAVRFNPYLWPSGQQMTNEVGKAMFSKAGELGVPVGFMCM 202 (342)
Q Consensus 151 ~eler~~~~-~g~~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH~~ 202 (342)
+++.+.... .+..||.+... ...++-+...+++++|.+.|+++.+++.
T Consensus 72 e~l~~~~~~~~~~~gvt~SGG----EP~~q~e~~~~~~~~ake~Gl~~~l~Tn 120 (260)
T COG1180 72 EVLVDKAFYSESGGGVTFSGG----EPTLQAEFALDLLRAAKERGLHVALDTN 120 (260)
T ss_pred HHHHHHhhhcCCCCEEEEECC----cchhhHHHHHHHHHHHHHCCCcEEEEcC
Confidence 345444333 37889987753 2346778899999999999999999975
No 459
>PF09151 DUF1936: Domain of unknown function (DUF1936); InterPro: IPR015234 This domain is found in a set of hypothetical archaeal proteins. Its exact function has not, as yet, been defined. ; PDB: 2QH1_B 1PVM_B.
Probab=22.81 E-value=33 Score=20.13 Aligned_cols=9 Identities=67% Similarity=1.158 Sum_probs=5.5
Q ss_pred hhccCCCcc
Q 019335 18 LSRCSNPAS 26 (342)
Q Consensus 18 ~~~~~~~~~ 26 (342)
+-||||||-
T Consensus 24 vfrcsnpac 32 (36)
T PF09151_consen 24 VFRCSNPAC 32 (36)
T ss_dssp EEEES-TT-
T ss_pred EEEcCCCcc
Confidence 358999985
No 460
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=22.76 E-value=1.4e+02 Score=27.23 Aligned_cols=45 Identities=11% Similarity=0.003 Sum_probs=27.3
Q ss_pred HHHHHHhh--hCCeEEEEeccCCCCCH----HHHHHHHHhCCCCcEEeccc
Q 019335 185 AMFSKAGE--LGVPVGFMCMKGLNLHI----SEIEELCTEFPSTTVLLDHL 229 (342)
Q Consensus 185 ~~~~~a~e--~~lpv~iH~~~~~~~~~----~~l~~l~~~~P~lk~vl~H~ 229 (342)
.+++...+ .+.-|.+|.+...-... ..+..++.+||.+|||=.|.
T Consensus 135 ~~l~~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~vKFvkI~a 185 (265)
T PF02114_consen 135 EFLDAIEKESKSTWVVVHIYEPGFPRCEIMNSCLECLARKYPEVKFVKIRA 185 (265)
T ss_dssp HHHHHCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TTSEEEEEEE
T ss_pred hHHHHHhccCCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCCceEEEEEeh
Confidence 44444433 36678899875321111 36889999999999985454
No 461
>PRK01278 argD acetylornithine transaminase protein; Provisional
Probab=22.75 E-value=2.1e+02 Score=27.18 Aligned_cols=50 Identities=22% Similarity=0.226 Sum_probs=36.2
Q ss_pred HHHHHHHHhcCCceEEEecCCCCCCC-CcCCcHHHHHHHHHHhhhCCeEEEE
Q 019335 150 IKQLEQLILKDGFRAVRFNPYLWPSG-QQMTNEVGKAMFSKAGELGVPVGFM 200 (342)
Q Consensus 150 ~~eler~~~~~g~~Gvk~~~~~~~~g-~~l~~~~~~~~~~~a~e~~lpv~iH 200 (342)
.+.+++.+. ...++|-+.|...+.| ..+..+.+..+.+.|.++|+.+.+-
T Consensus 165 ~~~l~~~l~-~~~~avivep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~D 215 (389)
T PRK01278 165 IEALKAAIT-PNTAAILIEPIQGEGGIRPAPDEFLKGLRQLCDENGLLLIFD 215 (389)
T ss_pred HHHHHHhhC-CCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEe
Confidence 456777653 4678888877643334 3567788999999999999998654
No 462
>cd07321 Extradiol_Dioxygenase_3A_like Subunit A of Class III extradiol dioxygenases. Extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. There are two major groups of dioxygenases according to the cleavage site of the aromatic ring. Intradiol enzymes cleave the aromatic ring between two hydroxyl groups, whereas extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Extradiol dioxygenases can be divided into three classes. Class I and II enzymes are evolutionary related and show sequence similarity, with the two domain class II enzymes evolving from the class I enzyme through gene duplication. Class III enzymes are different in sequence and structure and usually have two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents subunit A of c
Probab=22.69 E-value=85 Score=22.75 Aligned_cols=25 Identities=20% Similarity=0.349 Sum_probs=20.7
Q ss_pred HHHhcCCCCHHHHHHHHhHHHHHhc
Q 019335 316 LIANEVPLSPSELEWIMGGTIMQLF 340 (342)
Q Consensus 316 ~~~~~~~l~~~~~~~I~~~NA~rl~ 340 (342)
.+++..+|++++++.|..+...+|+
T Consensus 28 a~~~~~~Lt~eE~~al~~rD~~~L~ 52 (77)
T cd07321 28 AVLAEYGLTPEEKAALLARDVGALY 52 (77)
T ss_pred HHHHHcCCCHHHHHHHHcCCHHHHH
Confidence 4445679999999999999888775
No 463
>PF00710 Asparaginase: Asparaginase; InterPro: IPR006034 Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma []. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma [, ] - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die. Glutaminase, a similar enzyme, catalyses the deaminination of glutamine to glutamic acid and an ammonium ion []. Both enzymes are homotetramers []: two threonine residues in the N-terminal half of the proteins are involved in the catalytic activity.; GO: 0006520 cellular amino acid metabolic process; PDB: 1HFW_C 1HG1_B 1JSL_C 1HFK_A 1JSR_C 1HFJ_C 1HG0_D 1O7J_A 1ZQ1_A 1JJA_D ....
Probab=22.68 E-value=3.1e+02 Score=25.56 Aligned_cols=58 Identities=21% Similarity=0.292 Sum_probs=38.5
Q ss_pred EEEEEcCCCCcchHHHHHHHHHhcCCceEEEecCCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEEec
Q 019335 136 VGCCLANPAEDVIGIKQLEQLILKDGFRAVRFNPYLWPSGQQMTNEVGKAMFSKAGELGVPVGFMCM 202 (342)
Q Consensus 136 ~g~~~i~p~~~~~~~~eler~~~~~g~~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH~~ 202 (342)
+.+..+.|..+. +.++.++ .|++|+-+.... .|. ..+.+.+.++.+.+.|+||.+-+.
T Consensus 204 V~il~~~pG~~~---~~l~~~~--~~~~GlVl~~~G--~Gn--~~~~~~~~l~~a~~~gipVV~~sr 261 (313)
T PF00710_consen 204 VAILYLYPGMDA---ELLDAAL--AGAKGLVLEGYG--AGN--VPPALLEALARAVERGIPVVVTSR 261 (313)
T ss_dssp EEEEE--TT--T---HHHHHHH--TT-SEEEEEEBT--TTB--SSHHHHHHHHHHHHTTSEEEEEES
T ss_pred EEEEEECCCCCH---HHHHHHh--ccCCEEEEeccC--CCC--CCHHHHHHHHHHHhcCceEEEecc
Confidence 344455565543 5677775 679999987653 244 668889999999999999987654
No 464
>COG5564 Predicted TIM-barrel enzyme, possibly a dioxygenase [General function prediction only]
Probab=22.41 E-value=2.7e+02 Score=24.82 Aligned_cols=107 Identities=15% Similarity=0.237 Sum_probs=57.5
Q ss_pred CccchHHHHHHHHhC-CC-----cEEEEEEcCCCCcchHHHHHHHHHhcCCceEEEecCCCC-CCCC-c-------CCcH
Q 019335 117 HKFDHSLVTSVLKKY-PS-----KFVGCCLANPAEDVIGIKQLEQLILKDGFRAVRFNPYLW-PSGQ-Q-------MTNE 181 (342)
Q Consensus 117 ~~~~N~~~~~~~~~~-p~-----r~~g~~~i~p~~~~~~~~eler~~~~~g~~Gvk~~~~~~-~~g~-~-------l~~~ 181 (342)
++..|+.+++.+++- |- .|.|++..||... ....|+.+ +..||-||.=.|... -+|. . +.--
T Consensus 67 ~~naN~~vld~a~e~lp~~r~tpv~aGv~~~DPf~~--~~~~L~~L-~~~gf~gV~NFPTv~~iDG~~R~~lEetGmG~~ 143 (276)
T COG5564 67 YGNANDIVLDMAREVLPVVRQTPVLAGVNGTDPFCR--MVDFLKEL-KTAGFSGVQNFPTVGLIDGRMRASLEETGMGYG 143 (276)
T ss_pred ccCccHHHHHHHHhhCCccccCcceecccCCCcchh--HHHHHHHH-HhcCCcccccCCeeEEecchhhhhHHHhCcchH
Confidence 566799999888752 21 4777777888763 23455555 788999987444320 0111 0 1111
Q ss_pred HHHHHHHHHhhhCCeEEEEeccCCCCCHHHHHHHHHhCCCCcEEecccCCCC
Q 019335 182 VGKAMFSKAGELGVPVGFMCMKGLNLHISEIEELCTEFPSTTVLLDHLAFCK 233 (342)
Q Consensus 182 ~~~~~~~~a~e~~lpv~iH~~~~~~~~~~~l~~l~~~~P~lk~vl~H~G~~~ 233 (342)
.=-..++.|...++--.--+. ...+.....+ -+.-||+.|+|+..
T Consensus 144 ~Evemlr~A~~k~l~t~~yV~-----s~~eAqa~~~--aGadiiv~hmg~tt 188 (276)
T COG5564 144 LEVEMLREAHAKDLLTTPYVF-----SFEEAQAMTK--AGADIIVAHMGLTT 188 (276)
T ss_pred HHHHHHHHHHhccccccceec-----CHHHHHHHHH--cCcceeeecccccc
Confidence 112345555555443221111 2334444444 25668889998744
No 465
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=22.32 E-value=6.2e+02 Score=23.35 Aligned_cols=24 Identities=25% Similarity=0.133 Sum_probs=15.4
Q ss_pred cHHHHHHHHHHhhhCCeEEEEecc
Q 019335 180 NEVGKAMFSKAGELGVPVGFMCMK 203 (342)
Q Consensus 180 ~~~~~~~~~~a~e~~lpv~iH~~~ 203 (342)
.+....+++.|++.+.||.+....
T Consensus 28 ~e~~~avi~AAee~~sPvIlq~~~ 51 (288)
T TIGR00167 28 LETINAVLEAAAEEKSPVIIQFSN 51 (288)
T ss_pred HHHHHHHHHHHHHHCCCEEEECCc
Confidence 355666777777777777666543
No 466
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=22.29 E-value=5.7e+02 Score=22.88 Aligned_cols=144 Identities=11% Similarity=0.075 Sum_probs=67.9
Q ss_pred hHHHHHHHHHhcCCceEEEecCCCCCCCC-cC-------CcHHHHHHHHHHhhhCCeEE-EEeccCCCCC----------
Q 019335 148 IGIKQLEQLILKDGFRAVRFNPYLWPSGQ-QM-------TNEVGKAMFSKAGELGVPVG-FMCMKGLNLH---------- 208 (342)
Q Consensus 148 ~~~~eler~~~~~g~~Gvk~~~~~~~~g~-~l-------~~~~~~~~~~~a~e~~lpv~-iH~~~~~~~~---------- 208 (342)
+..+++++.+++.|...+-.+..+.. +. .. .-..+....+.|.++|.+.. +|.+......
T Consensus 45 ~~~~~l~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~r~~~~~~~~~~i~~A~~lG~~~v~~~~g~~~~~~~~~~~~~~~~ 123 (279)
T cd00019 45 ERAEKFKAIAEEGPSICLSVHAPYLI-NLASPDKEKREKSIERLKDEIERCEELGIRLLVFHPGSYLGQSKEEGLKRVIE 123 (279)
T ss_pred HHHHHHHHHHHHcCCCcEEEEcCcee-ccCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHH
Confidence 46678888776662322433322110 00 01 11357788888999988863 3444211001
Q ss_pred -HHHHHHHHHhCCCCcEEecccCCCCCCCCchhhHhHHHHhcccC-CCc--EEEecCcccccccCCCCCCCchhHHHHHH
Q 019335 209 -ISEIEELCTEFPSTTVLLDHLAFCKPPSNDEESLAFSNLLKLSR-FPQ--VYVKFSALFRVSRMPFPYQDLSSPLSQVV 284 (342)
Q Consensus 209 -~~~l~~l~~~~P~lk~vl~H~G~~~p~~~~~~~~~~~~~~~l~~-~~N--vy~~~S~~~~~~~~~~~~~~~~~~l~~~i 284 (342)
+..+.+.++++ ++++.+.-.+...... ......+.++++-.. .|| +.+|++.++.......+.+.....+..+.
T Consensus 124 ~l~~l~~~a~~~-gi~l~lEn~~~~~~~~-~~t~~~~~~li~~v~~~~~~g~~lD~~h~~~~g~~~~~~~~~~~~l~~~~ 201 (279)
T cd00019 124 ALNELIDKAETK-GVVIALETMAGQGNEI-GSSFEELKEIIDLIKEKPRVGVCIDTCHIFAAGYDISTVEGFEKVLEEFD 201 (279)
T ss_pred HHHHHHHhccCC-CCEEEEeCCCCCCCCC-CCCHHHHHHHHHhcCCCCCeEEEEEhhhHHhccCCCCCHHHHHHHHHHHH
Confidence 12233344445 6888887665531101 112223334443222 444 67777765432111000112445566666
Q ss_pred HhcCCCcEEE
Q 019335 285 SSFGANRVMW 294 (342)
Q Consensus 285 ~~~G~dRilf 294 (342)
+.+|.+||..
T Consensus 202 ~~i~~~~i~~ 211 (279)
T cd00019 202 KVIGLEYLKA 211 (279)
T ss_pred HHhChhheeE
Confidence 6767666643
No 467
>PTZ00125 ornithine aminotransferase-like protein; Provisional
Probab=22.27 E-value=2.4e+02 Score=26.77 Aligned_cols=51 Identities=16% Similarity=0.173 Sum_probs=34.5
Q ss_pred HHHHHHHHhcCCceEEEecCCCCCCCCcCC-cHHHHHHHHHHhhhCCeEEEE
Q 019335 150 IKQLEQLILKDGFRAVRFNPYLWPSGQQMT-NEVGKAMFSKAGELGVPVGFM 200 (342)
Q Consensus 150 ~~eler~~~~~g~~Gvk~~~~~~~~g~~l~-~~~~~~~~~~a~e~~lpv~iH 200 (342)
+++|++.+.....+.|-+.+...+.|..+. .+.+..+.+.|.++|+.+.+-
T Consensus 167 ~~~le~~l~~~~~~~v~~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~lli~D 218 (400)
T PTZ00125 167 VEALEKLLQDPNVAAFIVEPIQGEAGVIVPDDGYLKQVYELCKKYNVLLIVD 218 (400)
T ss_pred HHHHHHHhCCCCeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEe
Confidence 467777764356777776664334455554 345899999999999887554
No 468
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=22.23 E-value=6.1e+02 Score=23.21 Aligned_cols=97 Identities=12% Similarity=0.091 Sum_probs=53.1
Q ss_pred ChHHHHHHhHHCCCceEEEeCCCC---------C--ccc-hHHHHHHHHh-CCC-cEEEEEEcC---CCCcchHHHHHHH
Q 019335 93 HVDFLLQCMEEASVDGALIVQPIN---------H--KFD-HSLVTSVLKK-YPS-KFVGCCLAN---PAEDVIGIKQLEQ 155 (342)
Q Consensus 93 ~~~~ll~~md~~GI~~~v~~~~~~---------~--~~~-N~~~~~~~~~-~p~-r~~g~~~i~---p~~~~~~~~eler 155 (342)
.++..+..+...||+..+++.... . .++ -..+++..++ +++ ..+|++..+ |.-++ ...++++
T Consensus 75 ~l~~~L~~~~~~Gi~niLal~GD~p~~~~~~~~~~~~f~~a~~Li~~i~~~~~~~f~igva~~Pe~Hp~~~~-~~~d~~~ 153 (281)
T TIGR00677 75 MIDDALERAYSNGIQNILALRGDPPHIGDDWTEVEGGFQYAVDLVKYIRSKYGDYFCIGVAGYPEGHPEAES-VELDLKY 153 (281)
T ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCcCHHHHHHHHHHhCCCceEEEEEECCCCCCCCCC-HHHHHHH
Confidence 456677788999999998875321 0 111 1234455544 454 445666543 22222 2234444
Q ss_pred HHh--cCCceEEEecCCCCCCCCcCCcHHHHHHHHHHhhh--CCeE
Q 019335 156 LIL--KDGFRAVRFNPYLWPSGQQMTNEVGKAMFSKAGEL--GVPV 197 (342)
Q Consensus 156 ~~~--~~g~~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e~--~lpv 197 (342)
+.+ +.|.. +... -.-++...+..+.+.|.+. ++||
T Consensus 154 L~~Ki~aGA~---f~iT----Q~~Fd~~~~~~f~~~~~~~gi~~PI 192 (281)
T TIGR00677 154 LKEKVDAGAD---FIIT----QLFYDVDNFLKFVNDCRAIGIDCPI 192 (281)
T ss_pred HHHHHHcCCC---Eeec----cceecHHHHHHHHHHHHHcCCCCCE
Confidence 432 34554 2211 1234667889999999987 5555
No 469
>PRK05764 aspartate aminotransferase; Provisional
Probab=22.20 E-value=5.3e+02 Score=24.28 Aligned_cols=49 Identities=29% Similarity=0.221 Sum_probs=33.1
Q ss_pred HHHHHHHHhcCCceEEEec-CCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEE
Q 019335 150 IKQLEQLILKDGFRAVRFN-PYLWPSGQQMTNEVGKAMFSKAGELGVPVGFM 200 (342)
Q Consensus 150 ~~eler~~~~~g~~Gvk~~-~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH 200 (342)
.+++++.+ ..+.+.|-+. |. .+.|..+..+.++.+.+.|.++|+.+.+-
T Consensus 154 ~~~l~~~l-~~~~~~v~~~~p~-NPtG~~~~~~~~~~l~~~a~~~~~~ii~D 203 (393)
T PRK05764 154 VEQLEAAI-TPKTKALILNSPS-NPTGAVYSPEELEAIADVAVEHDIWVLSD 203 (393)
T ss_pred HHHHHHhh-CccceEEEEECCC-CCCCcccCHHHHHHHHHHHHHCCcEEEEe
Confidence 35666665 3455555433 32 34567777778899999999999888665
No 470
>PLN02208 glycosyltransferase family protein
Probab=22.06 E-value=7.6e+02 Score=24.25 Aligned_cols=120 Identities=12% Similarity=0.075 Sum_probs=61.8
Q ss_pred EEEeCCCCCccchHHHHHHHHhCCCcEEEEEEcCCCCc--chHHHHHHHHHhcCCceEEEecCCCCCCCCcCCcHHHHHH
Q 019335 109 ALIVQPINHKFDHSLVTSVLKKYPSKFVGCCLANPAED--VIGIKQLEQLILKDGFRAVRFNPYLWPSGQQMTNEVGKAM 186 (342)
Q Consensus 109 ~v~~~~~~~~~~N~~~~~~~~~~p~r~~g~~~i~p~~~--~~~~~eler~~~~~g~~Gvk~~~~~~~~g~~l~~~~~~~~ 186 (342)
+|++.+ .+..+.+++..+.+.+..+++.++-+.+... ....+++.++++...-++|-+.... .-..+..+++.++
T Consensus 196 ~vl~Nt-f~eLE~~~~~~~~~~~~~~v~~vGpl~~~~~~~~~~~~~~~~wLd~~~~~sVvyvSfG--S~~~l~~~q~~e~ 272 (442)
T PLN02208 196 VIALRT-CKEIEGKFCDYISRQYHKKVLLTGPMFPEPDTSKPLEEQWSHFLSGFPPKSVVFCSLG--SQIILEKDQFQEL 272 (442)
T ss_pred EEEEEC-HHHHHHHHHHHHHhhcCCCEEEEeecccCcCCCCCCHHHHHHHHhcCCCCcEEEEecc--ccccCCHHHHHHH
Confidence 455543 2333344444444444346777766544221 1123567777765544555544321 1124666777777
Q ss_pred HHHHhhhCCeEEEEeccC--C----CCCHHHH----------------HHHHHhCCCCcEEecccCC
Q 019335 187 FSKAGELGVPVGFMCMKG--L----NLHISEI----------------EELCTEFPSTTVLLDHLAF 231 (342)
Q Consensus 187 ~~~a~e~~lpv~iH~~~~--~----~~~~~~l----------------~~l~~~~P~lk~vl~H~G~ 231 (342)
...++.-+.|..+=.... . ...+..+ ..-+-.+|.++..+.|||+
T Consensus 273 ~~~l~~s~~pf~wv~r~~~~~~~~~~~lp~~f~~r~~~~g~~v~~W~PQ~~iL~H~~v~~FvtHcG~ 339 (442)
T PLN02208 273 CLGMELTGLPFLIAVKPPRGSSTVQEGLPEGFEERVKGRGVVWGGWVQQPLILDHPSIGCFVNHCGP 339 (442)
T ss_pred HHHHHhCCCcEEEEEeCCCcccchhhhCCHHHHHHHhcCCcEeeccCCHHHHhcCCccCeEEccCCc
Confidence 776666677775443321 0 0001000 0113446888889999997
No 471
>PRK08912 hypothetical protein; Provisional
Probab=22.01 E-value=5.7e+02 Score=24.13 Aligned_cols=49 Identities=16% Similarity=0.080 Sum_probs=33.3
Q ss_pred HHHHHHHHhcCCceEEEec-CCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEE
Q 019335 150 IKQLEQLILKDGFRAVRFN-PYLWPSGQQMTNEVGKAMFSKAGELGVPVGFM 200 (342)
Q Consensus 150 ~~eler~~~~~g~~Gvk~~-~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH 200 (342)
.+++++.+ ....+.+-+. |. .|.|..++.+.++.+.+.|+++++.|.+-
T Consensus 149 ~~~l~~~~-~~~~~~v~l~~p~-NPtG~~~s~~~~~~i~~~~~~~~~~ii~D 198 (387)
T PRK08912 149 RAALAAAF-SPRTKAVLLNNPL-NPAGKVFPREELALLAEFCQRHDAVAICD 198 (387)
T ss_pred HHHHHHHh-CccceEEEEeCCC-CCcCcccCHHHHHHHHHHHHHCCeEEEEh
Confidence 46676664 3455555443 32 35677788888999999999999877544
No 472
>PRK12414 putative aminotransferase; Provisional
Probab=21.89 E-value=5.1e+02 Score=24.50 Aligned_cols=49 Identities=10% Similarity=-0.010 Sum_probs=33.3
Q ss_pred HHHHHHHHhcCCceEEEecCCCCCCCCcCCcHHHHHHHHHHhhhCCeEEE
Q 019335 150 IKQLEQLILKDGFRAVRFNPYLWPSGQQMTNEVGKAMFSKAGELGVPVGF 199 (342)
Q Consensus 150 ~~eler~~~~~g~~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~i 199 (342)
.+.|++.++ .+.+.|-+.....|.|..+....++.+.+.|.++|+.|.+
T Consensus 152 ~~~l~~~l~-~~~~~v~i~~p~NPTG~~~s~~~~~~i~~~a~~~~~~ii~ 200 (384)
T PRK12414 152 WDEVAAAIT-PRTRMIIVNTPHNPSATVFSAADLARLAQLTRNTDIVILS 200 (384)
T ss_pred HHHHHhhcC-cccEEEEEcCCCCCCCcCCCHHHHHHHHHHHHHCCeEEEE
Confidence 356766653 4556665432123567778878899999999999988765
No 473
>PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional
Probab=21.87 E-value=2.4e+02 Score=27.85 Aligned_cols=52 Identities=21% Similarity=0.252 Sum_probs=36.2
Q ss_pred HHHHHHHHhcC---CceEEEecCCCCCCC-CcCCcHHHHHHHHHHhhhCCeEEEEe
Q 019335 150 IKQLEQLILKD---GFRAVRFNPYLWPSG-QQMTNEVGKAMFSKAGELGVPVGFMC 201 (342)
Q Consensus 150 ~~eler~~~~~---g~~Gvk~~~~~~~~g-~~l~~~~~~~~~~~a~e~~lpv~iH~ 201 (342)
.++|++.+.+. ..+.|-+.....+.| ..++...++.+.+.|.++|++|..-.
T Consensus 163 ~e~Le~~i~~~~~~~tk~Ivl~~p~NptGG~v~s~~~l~~I~~ia~~~gi~li~Da 218 (460)
T PRK13238 163 LEKLEALIEEVGAENVPFIVMTITNNSAGGQPVSMANLRAVYEIAKKYGIPVVIDA 218 (460)
T ss_pred HHHHHHHHhhcCCCceeEEEEecCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEC
Confidence 57788876543 466666653222333 56677789999999999999997763
No 474
>PRK07337 aminotransferase; Validated
Probab=21.85 E-value=5.3e+02 Score=24.32 Aligned_cols=50 Identities=12% Similarity=0.056 Sum_probs=35.6
Q ss_pred HHHHHHHHhcCCceEEEecCCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEE
Q 019335 150 IKQLEQLILKDGFRAVRFNPYLWPSGQQMTNEVGKAMFSKAGELGVPVGFM 200 (342)
Q Consensus 150 ~~eler~~~~~g~~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH 200 (342)
.+++++.+ ..+.+.|-+.....|.|..++.+++.++.+.|+++|+.|.+-
T Consensus 153 ~~~l~~~~-~~~~~~v~l~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~D 202 (388)
T PRK07337 153 AADVEAAW-GERTRGVLLASPSNPTGTSIAPDELRRIVEAVRARGGFTIVD 202 (388)
T ss_pred HHHHHhhc-CccceEEEEECCCCCCCcCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 46676664 446666655322235688888899999999999999887655
No 475
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=21.85 E-value=5e+02 Score=25.54 Aligned_cols=100 Identities=9% Similarity=0.054 Sum_probs=51.9
Q ss_pred hHHHHHHhHHCCCceEEE-eCCCCCccchHHHHHHHHhCCCcE-EEEEEcCCCCcchHHHHHHHHHhcCCceEEEecCCC
Q 019335 94 VDFLLQCMEEASVDGALI-VQPINHKFDHSLVTSVLKKYPSKF-VGCCLANPAEDVIGIKQLEQLILKDGFRAVRFNPYL 171 (342)
Q Consensus 94 ~~~ll~~md~~GI~~~v~-~~~~~~~~~N~~~~~~~~~~p~r~-~g~~~i~p~~~~~~~~eler~~~~~g~~Gvk~~~~~ 171 (342)
-..+++.|.+.|..+.|. +.|........-...-+++-|+.. ..+..+++.. ..+.++++. +.|++++-+....
T Consensus 23 g~~~~~~l~~~gf~g~v~~Vnp~~~~i~G~~~~~sl~~lp~~~Dlavi~vp~~~---~~~~l~e~~-~~gv~~~vi~s~g 98 (447)
T TIGR02717 23 GYAIMKNLIEGGYKGKIYPVNPKAGEILGVKAYPSVLEIPDPVDLAVIVVPAKY---VPQVVEECG-EKGVKGAVVITAG 98 (447)
T ss_pred HHHHHHHHHhCCCCCcEEEECCCCCccCCccccCCHHHCCCCCCEEEEecCHHH---HHHHHHHHH-hcCCCEEEEECCC
Confidence 356778888888865554 444311111111111112223211 2344556543 446677774 6799988765432
Q ss_pred CCCCCcCCcHH-HHHHHHHHhhhCCeEE
Q 019335 172 WPSGQQMTNEV-GKAMFSKAGELGVPVG 198 (342)
Q Consensus 172 ~~~g~~l~~~~-~~~~~~~a~e~~lpv~ 198 (342)
.+.. ...... -+++.++|+++|+.|.
T Consensus 99 f~e~-g~~g~~~~~~l~~~a~~~girvl 125 (447)
T TIGR02717 99 FKEV-GEEGAELEQELVEIARKYGMRLL 125 (447)
T ss_pred cccc-CcchHHHHHHHHHHHHHcCCEEE
Confidence 1110 011122 3688999999999974
No 476
>cd07923 Gallate_dioxygenase_C The C-terminal domain of Gallate Dioxygenase, which catalyzes the oxidization and subsequent ring-opening of gallate. Gallate Dioxygenase catalyzes the oxidization and subsequent ring-opening of gallate, an intermediate in the degradation of the aromatic compound, syringate. The reaction product of gallate dioxygenase is 4-oxalomesaconate. The amino acid sequence of the N-terminal and C-terminal regions of gallate dioxygenase exhibits homology with the sequence of the PCA 4,5-dioxygenase B (catalytic) and A subunits, respectively. This model represents the C-terminal domain, which is similar to the A subunit of PCA 4,5-dioxygenase (or LigAB). The enzyme is estimated to be a homodimer according to the Escherichia coli enzyme. Since enzymes in this subfamily have fused A and B subunits, the dimer interface may resemble the tetramer interface of classical LigAB enzymes. This enzyme belongs to the class III extradiol dioxygenase family, composed of enzymes whi
Probab=21.80 E-value=1.1e+02 Score=23.11 Aligned_cols=25 Identities=16% Similarity=0.197 Sum_probs=21.0
Q ss_pred HHHhcCCCCHHHHHHHHhHHHHHhc
Q 019335 316 LIANEVPLSPSELEWIMGGTIMQLF 340 (342)
Q Consensus 316 ~~~~~~~l~~~~~~~I~~~NA~rl~ 340 (342)
.+++..+|++++++.|..++-.+++
T Consensus 30 a~~~e~gLt~Ee~~av~~rD~~~li 54 (94)
T cd07923 30 ALFDEAGLTEEERTLIRNRDWIGMI 54 (94)
T ss_pred HHHHHcCCCHHHHHHHHcchHHHHH
Confidence 4455689999999999999888876
No 477
>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=21.69 E-value=5.7e+02 Score=24.73 Aligned_cols=116 Identities=12% Similarity=0.067 Sum_probs=64.0
Q ss_pred cCCcHHHHHHHHHHhhhCCeEEEEeccCC---CCCHHHHHHHHHhCCCCcEEecccCCCCCCCCchhhHhHHHHhcccCC
Q 019335 177 QMTNEVGKAMFSKAGELGVPVGFMCMKGL---NLHISEIEELCTEFPSTTVLLDHLAFCKPPSNDEESLAFSNLLKLSRF 253 (342)
Q Consensus 177 ~l~~~~~~~~~~~a~e~~lpv~iH~~~~~---~~~~~~l~~l~~~~P~lk~vl~H~G~~~p~~~~~~~~~~~~~~~l~~~ 253 (342)
++.+|.|.-.-..-++.|+.|.--..... ......+..-++..|.=-+|+-|.+...|--.+-....|+++.++.+.
T Consensus 124 wis~PtW~NH~~If~~aGl~v~~Y~Yyd~~~~~~df~~mla~L~~a~~~~vvLLH~CcHNPTG~D~t~~qW~~l~~~~~~ 203 (396)
T COG1448 124 WISDPTWPNHKAIFEAAGLEVETYPYYDAETKGLDFDGMLADLKTAPEGSVVLLHGCCHNPTGIDPTEEQWQELADLIKE 203 (396)
T ss_pred EeCCCCcHhHHHHHHhcCCceeeeeccccccccccHHHHHHHHHhCCCCCEEEEecCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 44555444444444455888854443211 123455666677888777888898876553222345679887765432
Q ss_pred Cc--EEEecCcccccccCCCCCCCchhHHHHHHHhcCCCcEEEccCC
Q 019335 254 PQ--VYVKFSALFRVSRMPFPYQDLSSPLSQVVSSFGANRVMWGSDF 298 (342)
Q Consensus 254 ~N--vy~~~S~~~~~~~~~~~~~~~~~~l~~~i~~~G~dRilfGSD~ 298 (342)
.+ ..+|+.-- .+. . ..+.....+|.+++.. ++ +|..+-|
T Consensus 204 r~lip~~D~AYQ-GF~-~--GleeDa~~lR~~a~~~-~~-~lva~S~ 244 (396)
T COG1448 204 RGLIPFFDIAYQ-GFA-D--GLEEDAYALRLFAEVG-PE-LLVASSF 244 (396)
T ss_pred cCCeeeeehhhh-hhc-c--chHHHHHHHHHHHHhC-Cc-EEEEehh
Confidence 22 46776521 111 1 1233445677777763 44 6666654
No 478
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=21.61 E-value=3.6e+02 Score=26.10 Aligned_cols=77 Identities=13% Similarity=0.219 Sum_probs=48.9
Q ss_pred HHHHHHHhcCCceEEEecCCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEEeccC--CCCCHHHHHHHHHhCCCCcEEecc
Q 019335 151 KQLEQLILKDGFRAVRFNPYLWPSGQQMTNEVGKAMFSKAGELGVPVGFMCMKG--LNLHISEIEELCTEFPSTTVLLDH 228 (342)
Q Consensus 151 ~eler~~~~~g~~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH~~~~--~~~~~~~l~~l~~~~P~lk~vl~H 228 (342)
+.+.++++..|..-..+... | |...+=+..+..+++-.+......+|+-+. .-..+..+..++++| +..+|+|=
T Consensus 93 ~R~~~ia~~~g~~v~~~~~~-w--g~~v~p~~v~~~L~~~~~~~~V~~vH~ETSTGvlnpl~~I~~~~k~~-g~l~iVDa 168 (383)
T COG0075 93 ERFAEIAERYGAEVVVLEVE-W--GEAVDPEEVEEALDKDPDIKAVAVVHNETSTGVLNPLKEIAKAAKEH-GALLIVDA 168 (383)
T ss_pred HHHHHHHHHhCCceEEEeCC-C--CCCCCHHHHHHHHhcCCCccEEEEEeccCcccccCcHHHHHHHHHHc-CCEEEEEe
Confidence 34455555556665555554 3 555655566666665556677778887532 223567888899998 77788776
Q ss_pred cCC
Q 019335 229 LAF 231 (342)
Q Consensus 229 ~G~ 231 (342)
...
T Consensus 169 VsS 171 (383)
T COG0075 169 VSS 171 (383)
T ss_pred ccc
Confidence 544
No 479
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=21.55 E-value=6e+02 Score=22.82 Aligned_cols=73 Identities=15% Similarity=0.269 Sum_probs=46.6
Q ss_pred chHHHHHHHHHhcCCceEEEecCCCC--CCC--CcCCcH----HHHHHHHHHhhhCCeEEEEeccCCCCCHHHHHHHHHh
Q 019335 147 VIGIKQLEQLILKDGFRAVRFNPYLW--PSG--QQMTNE----VGKAMFSKAGELGVPVGFMCMKGLNLHISEIEELCTE 218 (342)
Q Consensus 147 ~~~~~eler~~~~~g~~Gvk~~~~~~--~~g--~~l~~~----~~~~~~~~a~e~~lpv~iH~~~~~~~~~~~l~~l~~~ 218 (342)
.++++.+++.+..+|+.|+-+.+... .-| ...+++ ....+.+.|.++|+++.+++. ........+++
T Consensus 148 ~~av~n~~eI~av~gvd~l~iG~~DLs~slG~~~~~~~~~v~~a~~~v~~aa~a~G~~~g~~~~-----~~~~~~~~~~~ 222 (249)
T TIGR03239 148 QKGVDNVDEIAAVDGVDGIFVGPSDLAAALGHLGNPNHPDVQKAIRHIFDRAAAHGKPCGILAP-----VEADARRYLEW 222 (249)
T ss_pred HHHHHhHHHHhCCCCCCEEEEChHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHcCCCEEEcCC-----CHHHHHHHHHc
Confidence 34788899988778999998876521 001 122333 456778889999999987764 23455555543
Q ss_pred CCCCcEEe
Q 019335 219 FPSTTVLL 226 (342)
Q Consensus 219 ~P~lk~vl 226 (342)
+.+++.
T Consensus 223 --G~~~~~ 228 (249)
T TIGR03239 223 --GATFVA 228 (249)
T ss_pred --CCCEEE
Confidence 345554
No 480
>PRK07324 transaminase; Validated
Probab=21.52 E-value=5.8e+02 Score=24.05 Aligned_cols=50 Identities=16% Similarity=0.164 Sum_probs=34.8
Q ss_pred HHHHHHHHhcCCceEEEecCCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEE
Q 019335 150 IKQLEQLILKDGFRAVRFNPYLWPSGQQMTNEVGKAMFSKAGELGVPVGFM 200 (342)
Q Consensus 150 ~~eler~~~~~g~~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH 200 (342)
.+++++.+ ....+.|-+.....|.|..++.+.++.+.+.|+++|+.|.+-
T Consensus 143 ~~~l~~~~-~~~~kli~i~~p~NPtG~~~~~~~l~~i~~~a~~~~~~ii~D 192 (373)
T PRK07324 143 LDELRRLV-RPNTKLICINNANNPTGALMDRAYLEEIVEIARSVDAYVLSD 192 (373)
T ss_pred HHHHHHhC-CCCCcEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 45666654 345566655422235677788889999999999999888665
No 481
>TIGR03537 DapC succinyldiaminopimelate transaminase. Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.
Probab=21.47 E-value=2.4e+02 Score=26.30 Aligned_cols=51 Identities=20% Similarity=0.180 Sum_probs=33.6
Q ss_pred HHHHHHHHhcCCceEEEecCCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEEe
Q 019335 150 IKQLEQLILKDGFRAVRFNPYLWPSGQQMTNEVGKAMFSKAGELGVPVGFMC 201 (342)
Q Consensus 150 ~~eler~~~~~g~~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH~ 201 (342)
.+.+++.+. .+.+.+-+.....|.|..++.++++.+.+.|.++|+.|..-.
T Consensus 126 ~~~l~~~~~-~~~~~i~i~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De 176 (350)
T TIGR03537 126 LEKVEKSIL-EETKIVWINYPHNPTGATAPRSYLKETIAMCREHGIILCSDE 176 (350)
T ss_pred HHHHHHhhh-hccEEEEEeCCCCCcCcccCHHHHHHHHHHHHHcCcEEEEec
Confidence 355666543 245555444222356777888889999999999998886654
No 482
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=21.41 E-value=1e+02 Score=25.47 Aligned_cols=25 Identities=28% Similarity=0.462 Sum_probs=17.8
Q ss_pred cHHHHHHHHHHhhhCCeEEEEeccC
Q 019335 180 NEVGKAMFSKAGELGVPVGFMCMKG 204 (342)
Q Consensus 180 ~~~~~~~~~~a~e~~lpv~iH~~~~ 204 (342)
.+.+..+++.+.+..-|+++||..|
T Consensus 110 ~~~~~~~~~~l~~~~~p~l~HC~aG 134 (164)
T PF13350_consen 110 AEAYRKIFELLADAPGPVLFHCTAG 134 (164)
T ss_dssp HHHHHHHHHHHH-TT--EEEE-SSS
T ss_pred hHHHHHHHHHhccCCCcEEEECCCC
Confidence 5789999998887767999999765
No 483
>PRK08363 alanine aminotransferase; Validated
Probab=21.31 E-value=4.7e+02 Score=24.84 Aligned_cols=50 Identities=24% Similarity=0.312 Sum_probs=33.8
Q ss_pred HHHHHHHHhcCCceEEEec-CCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEEe
Q 019335 150 IKQLEQLILKDGFRAVRFN-PYLWPSGQQMTNEVGKAMFSKAGELGVPVGFMC 201 (342)
Q Consensus 150 ~~eler~~~~~g~~Gvk~~-~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH~ 201 (342)
.+++++.+ ..+.+.|-+. |. .+.|..++.+.++.+.+.|+++|+.+.+-.
T Consensus 156 ~~~l~~~~-~~~~~~v~l~~p~-NPtG~~~~~~~~~~l~~~a~~~~~~li~De 206 (398)
T PRK08363 156 IDDIRKKI-TEKTKAIAVINPN-NPTGALYEKKTLKEILDIAGEHDLPVISDE 206 (398)
T ss_pred HHHHHhhC-CcceEEEEEECCC-CCCCcCcCHHHHHHHHHHHHHcCeEEEEhh
Confidence 45666654 3345555543 32 355777888889999999999998876543
No 484
>PRK06256 biotin synthase; Validated
Probab=21.29 E-value=6.7e+02 Score=23.30 Aligned_cols=122 Identities=14% Similarity=0.056 Sum_probs=62.0
Q ss_pred CChHHHHHHhH---HCCCceEEEeCCCC--CccchHHHHHHHH---hCCCcEEEEEEcCCCCcchHHHHHHHHHhcCCce
Q 019335 92 GHVDFLLQCME---EASVDGALIVQPIN--HKFDHSLVTSVLK---KYPSKFVGCCLANPAEDVIGIKQLEQLILKDGFR 163 (342)
Q Consensus 92 ~~~~~ll~~md---~~GI~~~v~~~~~~--~~~~N~~~~~~~~---~~p~r~~g~~~i~p~~~~~~~~eler~~~~~g~~ 163 (342)
.+.+++++.++ +.|+...+++.... ...+-+++.++++ +.++ +...+.+...+ + +.++++ ++.|+.
T Consensus 91 ~s~eeI~~~~~~~~~~g~~~~~l~~~g~~p~~~~~~~~~e~i~~i~~~~~-i~~~~~~g~l~-~---e~l~~L-keaG~~ 164 (336)
T PRK06256 91 LDIEELIEAAKEAIEEGAGTFCIVASGRGPSGKEVDQVVEAVKAIKEETD-LEICACLGLLT-E---EQAERL-KEAGVD 164 (336)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEecCCCCCchHHHHHHHHHHHHHhcCC-CcEEecCCcCC-H---HHHHHH-HHhCCC
Confidence 46777776544 57887776654322 1112245555554 3332 33333333322 2 345444 677888
Q ss_pred EEEecCCCCC-----CCCcCCcHHHHHHHHHHhhhCCeEEEEeccCCCCCHHH---HHHHHHhC
Q 019335 164 AVRFNPYLWP-----SGQQMTNEVGKAMFSKAGELGVPVGFMCMKGLNLHISE---IEELCTEF 219 (342)
Q Consensus 164 Gvk~~~~~~~-----~g~~l~~~~~~~~~~~a~e~~lpv~iH~~~~~~~~~~~---l~~l~~~~ 219 (342)
.+-+.....+ -...-+-......++.+.+.|+.+..+.--|......+ ...++++.
T Consensus 165 ~v~~~lEts~~~~~~i~~~~t~~~~i~~i~~a~~~Gi~v~~~~I~GlgEt~ed~~~~~~~l~~l 228 (336)
T PRK06256 165 RYNHNLETSRSYFPNVVTTHTYEDRIDTCEMVKAAGIEPCSGGIIGMGESLEDRVEHAFFLKEL 228 (336)
T ss_pred EEecCCccCHHHHhhcCCCCCHHHHHHHHHHHHHcCCeeccCeEEeCCCCHHHHHHHHHHHHhC
Confidence 8765432100 00111224556788889999999876643333333333 33344444
No 485
>PRK09792 4-aminobutyrate transaminase; Provisional
Probab=21.26 E-value=2.9e+02 Score=26.80 Aligned_cols=52 Identities=19% Similarity=0.229 Sum_probs=37.1
Q ss_pred HHHHHHHHHhc----CCceEEEecCCCCCCCCcC-CcHHHHHHHHHHhhhCCeEEEE
Q 019335 149 GIKQLEQLILK----DGFRAVRFNPYLWPSGQQM-TNEVGKAMFSKAGELGVPVGFM 200 (342)
Q Consensus 149 ~~~eler~~~~----~g~~Gvk~~~~~~~~g~~l-~~~~~~~~~~~a~e~~lpv~iH 200 (342)
.++.+++.+++ ..+.+|-+.|...+.|..+ ..+.++.+.+.|.++|+.+.+-
T Consensus 182 ~~~~l~~~~~~~~~~~~iaavi~EPvq~~~G~~~~~~~~l~~l~~lc~~~g~llI~D 238 (421)
T PRK09792 182 SLDAIERLFKSDIEAKQVAAIIFEPVQGEGGFNVAPKELVAAIRRLCDEHGIVMIAD 238 (421)
T ss_pred HHHHHHHHHHhccCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEe
Confidence 34677777652 4577887777643334444 6678899999999999999664
No 486
>PLN02623 pyruvate kinase
Probab=21.21 E-value=8.2e+02 Score=25.17 Aligned_cols=96 Identities=13% Similarity=0.051 Sum_probs=60.2
Q ss_pred HHHhHHCCCceEEEeCCCCCccchHHHHHHHHhCCCcEEEEEEcCCCCcchHHHHHHHHHhcCCceEEEecCCCCCCCCc
Q 019335 98 LQCMEEASVDGALIVQPINHKFDHSLVTSVLKKYPSKFVGCCLANPAEDVIGIKQLEQLILKDGFRAVRFNPYLWPSGQQ 177 (342)
Q Consensus 98 l~~md~~GI~~~v~~~~~~~~~~N~~~~~~~~~~p~r~~g~~~i~p~~~~~~~~eler~~~~~g~~Gvk~~~~~~~~g~~ 177 (342)
++.--++|||...++-. ....|-..+.++++....+..-++-|.- . ++++.|++.+. |.-||-+.+... +..
T Consensus 284 i~f~~~~~vD~ialSFV-r~a~DV~~~r~~l~~~~~~~~iiakIEt--~-eaVeNldeIl~--g~DgImIgrgDL--gve 355 (581)
T PLN02623 284 IKFGVENKVDFYAVSFV-KDAQVVHELKDYLKSCNADIHVIVKIES--A-DSIPNLHSIIT--ASDGAMVARGDL--GAE 355 (581)
T ss_pred HHHHHHcCCCEEEECCC-CCHHHHHHHHHHHHHcCCcceEEEEECC--H-HHHHhHHHHHH--hCCEEEECcchh--hhh
Confidence 34455778888654321 1223445566666665444444455433 2 37888888865 888998887642 333
Q ss_pred CCc----HHHHHHHHHHhhhCCeEEEEe
Q 019335 178 MTN----EVGKAMFSKAGELGVPVGFMC 201 (342)
Q Consensus 178 l~~----~~~~~~~~~a~e~~lpv~iH~ 201 (342)
+.- .....+.+.|.++|.|+.+.+
T Consensus 356 lg~~~v~~~qk~Ii~~~~~~gKpvivaT 383 (581)
T PLN02623 356 LPIEEVPLLQEEIIRRCRSMGKPVIVAT 383 (581)
T ss_pred cCcHHHHHHHHHHHHHHHHhCCCEEEEC
Confidence 332 245788889999999998765
No 487
>PRK07309 aromatic amino acid aminotransferase; Validated
Probab=21.21 E-value=2.6e+02 Score=26.57 Aligned_cols=51 Identities=29% Similarity=0.268 Sum_probs=35.4
Q ss_pred HHHHHHHHhc--CCceEEEec-CCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEEe
Q 019335 150 IKQLEQLILK--DGFRAVRFN-PYLWPSGQQMTNEVGKAMFSKAGELGVPVGFMC 201 (342)
Q Consensus 150 ~~eler~~~~--~g~~Gvk~~-~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH~ 201 (342)
.+.+++.++. .+.+.|-+. |. .|.|..++.+.++.+.+.|+++|++|.+-.
T Consensus 153 ~~~l~~~~~~~~~~~~~i~l~~P~-NPtG~~~s~~~~~~l~~~~~~~~~~ii~D~ 206 (391)
T PRK07309 153 PEMLEKAILEQGDKLKAVILNYPA-NPTGVTYSREQIKALADVLKKYDIFVISDE 206 (391)
T ss_pred HHHHHHHhhccCCCeEEEEEECCC-CCCCcCcCHHHHHHHHHHHHHcCcEEEEEc
Confidence 4566665543 245666554 43 355777888899999999999999887654
No 488
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=21.17 E-value=2.3e+02 Score=22.00 Aligned_cols=40 Identities=8% Similarity=0.101 Sum_probs=23.0
Q ss_pred hHHHHHHhHHCCCceEEEeCCCCCccchHHHHHHHHhCCCcEEE
Q 019335 94 VDFLLQCMEEASVDGALIVQPINHKFDHSLVTSVLKKYPSKFVG 137 (342)
Q Consensus 94 ~~~ll~~md~~GI~~~v~~~~~~~~~~N~~~~~~~~~~p~r~~g 137 (342)
..++++++.+.|+..+++.+. ..++.+.+.++++.=+++|
T Consensus 68 ~~~~v~~~~~~g~~~v~~~~g----~~~~~~~~~a~~~gi~vig 107 (116)
T PF13380_consen 68 VPEIVDEAAALGVKAVWLQPG----AESEELIEAAREAGIRVIG 107 (116)
T ss_dssp HHHHHHHHHHHT-SEEEE-TT----S--HHHHHHHHHTT-EEEE
T ss_pred HHHHHHHHHHcCCCEEEEEcc----hHHHHHHHHHHHcCCEEEe
Confidence 456666777778777665542 4567777777777655553
No 489
>PF07746 LigA: Aromatic-ring-opening dioxygenase LigAB, LigA subunit; InterPro: IPR011986 Dioxygenases catalyse the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms. Cleavage of aromatic rings is one of the most important functions of dioxygenases, which play key roles in the degradation of aromatic compounds. The substrates of ring-cleavage dioxygenases can be classified into two groups according to the mode of scission of the aromatic ring. Intradiol enzymes (IPR000627 from INTERPRO) use a non-haem Fe(III) to cleave the aromatic ring between two hydroxyl groups (ortho-cleavage), whereas extradiol enzymes use a non-haem Fe(II) to cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon (meta-cleavage) [, ]. These two subfamilies differ in sequence, structural fold, iron ligands, and the orientation of second sphere active site amino acid residues. Extradiol dioxygenases are usually homo-multimeric, bind one atom of ferrous ion per subunit and have a subunit size of about 33 kDa. Extradiol dioxygenases can be divided into three classes. Class I and II enzymes (IPR000486 from INTERPRO) show sequence similarity, with the two-domain class II enzymes having evolved from a class I enzyme through gene duplication. Class III enzymes are different in sequence and structure, but they do share several common active-site characteristics with the class II enzymes, in particular the coordination sphere and the disposition of the putative catalytic base are very similar. Class III enzymes usually have two subunits, designated A (IPR004183 from INTERPRO) and B (IPR004183 from INTERPRO). LigAB is a protocatechuate 4,5-dioxygenase (1.13.11.8 from EC) that belongs to the extradiol class III enzyme family. The LigA subunit of this enzyme is multi-helical, containing a compact array of 6 short helices [].; PDB: 1BOU_A 1B4U_A.
Probab=21.08 E-value=1.3e+02 Score=22.50 Aligned_cols=26 Identities=15% Similarity=0.203 Sum_probs=18.8
Q ss_pred HHHHhcCCCCHHHHHHHHhHHHHHhc
Q 019335 315 SLIANEVPLSPSELEWIMGGTIMQLF 340 (342)
Q Consensus 315 ~~~~~~~~l~~~~~~~I~~~NA~rl~ 340 (342)
+.+++..+|++++++.|..++-.+++
T Consensus 22 ~a~~~~~~Lt~eer~av~~rD~~~L~ 47 (88)
T PF07746_consen 22 EAYLDEYGLTEEERQAVLDRDWLALI 47 (88)
T ss_dssp HHHHHCCT--HHHHHHHHCT-HHHHH
T ss_pred HHHHHHcCCCHHHHHHHHcCCHHHHH
Confidence 34556789999999999999888776
No 490
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=21.03 E-value=7.3e+02 Score=23.62 Aligned_cols=101 Identities=12% Similarity=0.097 Sum_probs=54.0
Q ss_pred HHHhHHCCCceEEEeCC-CCC------ccch-------HHHHHHHHhCCCcEEEEEEcCC--CCcchHHHHHHHHHhcCC
Q 019335 98 LQCMEEASVDGALIVQP-INH------KFDH-------SLVTSVLKKYPSKFVGCCLANP--AEDVIGIKQLEQLILKDG 161 (342)
Q Consensus 98 l~~md~~GI~~~v~~~~-~~~------~~~N-------~~~~~~~~~~p~r~~g~~~i~p--~~~~~~~~eler~~~~~g 161 (342)
++.+.++|++..-++-+ +.. +... ...++.+++..-. +.+...+. .+++ .+.++-+.+.+.|
T Consensus 77 i~~a~~~g~~~i~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~-v~~~~eda~r~~~~-~l~~~~~~~~~~g 154 (363)
T TIGR02090 77 IDKAIDCGVDSIHTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLI-VEFSAEDATRTDID-FLIKVFKRAEEAG 154 (363)
T ss_pred HHHHHHcCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCE-EEEEEeecCCCCHH-HHHHHHHHHHhCC
Confidence 56667789987665433 211 1111 1234455555322 33332232 3334 3444434446789
Q ss_pred ceEEEecCCCCCCCCcCCcHHHHHHHHHHhh-hCCeEEEEeccC
Q 019335 162 FRAVRFNPYLWPSGQQMTNEVGKAMFSKAGE-LGVPVGFMCMKG 204 (342)
Q Consensus 162 ~~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e-~~lpv~iH~~~~ 204 (342)
...|.+--.. |. +.=..+..+++.+.+ .++++.+|+++.
T Consensus 155 ~~~i~l~DT~---G~-~~P~~v~~li~~l~~~~~~~l~~H~Hnd 194 (363)
T TIGR02090 155 ADRINIADTV---GV-LTPQKMEELIKKLKENVKLPISVHCHND 194 (363)
T ss_pred CCEEEEeCCC---Cc-cCHHHHHHHHHHHhcccCceEEEEecCC
Confidence 8888776432 32 222356666666654 579999999864
No 491
>TIGR03190 benz_CoA_bzdN benzoyl-CoA reductase, bzd-type, N subunit. Members of this family are the N subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=20.97 E-value=4.8e+02 Score=25.00 Aligned_cols=20 Identities=10% Similarity=0.044 Sum_probs=11.1
Q ss_pred HHHHHHHHhcCCceEEEecC
Q 019335 150 IKQLEQLILKDGFRAVRFNP 169 (342)
Q Consensus 150 ~~eler~~~~~g~~Gvk~~~ 169 (342)
.+.|.+.+++.++.||-++.
T Consensus 302 ~~~i~~lv~~~~~DGVI~~~ 321 (377)
T TIGR03190 302 YDHVLGLAKEYNVQGAIFLQ 321 (377)
T ss_pred HHHHHHHHHHhCCCEEEEec
Confidence 34555555556666665553
No 492
>cd03308 CmuA_CmuC_like CmuA_CmuC_like: uncharacterized protein family similar to uroporphyrinogen decarboxylase (URO-D) and the methyltransferases CmuA and CmuC.
Probab=20.86 E-value=5.1e+02 Score=24.77 Aligned_cols=47 Identities=13% Similarity=-0.095 Sum_probs=24.8
Q ss_pred HHHHHHhCCCcEEEEEEcCCC-----CcchHHHHHHHHHhcCC-ceEEEecCC
Q 019335 124 VTSVLKKYPSKFVGCCLANPA-----EDVIGIKQLEQLILKDG-FRAVRFNPY 170 (342)
Q Consensus 124 ~~~~~~~~p~r~~g~~~i~p~-----~~~~~~~eler~~~~~g-~~Gvk~~~~ 170 (342)
+.++.+..+++..-.+.++|. .+++..++.+++++..+ =.|.-+.+.
T Consensus 303 l~~ak~~~g~~~~i~GNl~p~~L~~Gt~e~i~~~v~~~l~~~~~~~gfIl~~g 355 (378)
T cd03308 303 PKKVKEKLGDKKCIAGGFPTTLLKYGTPEECIDYVKELLDTLAPGGGFIFGTD 355 (378)
T ss_pred HHHHHHHhCCCEEEEcCCCCHHHhcCCHHHHHHHHHHHHHHhCCCCCEEEeCC
Confidence 455556666665556666662 23445566666665433 234444443
No 493
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=20.81 E-value=4.8e+02 Score=24.25 Aligned_cols=134 Identities=10% Similarity=0.104 Sum_probs=68.6
Q ss_pred HHHHHHHhcCCceEEEecCCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEEeccCCCCCHH-HHHHHHHhCCCCcEEeccc
Q 019335 151 KQLEQLILKDGFRAVRFNPYLWPSGQQMTNEVGKAMFSKAGELGVPVGFMCMKGLNLHIS-EIEELCTEFPSTTVLLDHL 229 (342)
Q Consensus 151 ~eler~~~~~g~~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH~~~~~~~~~~-~l~~l~~~~P~lk~vl~H~ 229 (342)
+++.+.+.+.|+..|.+.. |..+-.+.+..+++.+.+.|+.+.+-+- | ..+. .+..+ ...+...|.+ |+
T Consensus 62 ee~~~~i~e~g~~~V~i~G-----GEPLL~pdl~eiv~~~~~~g~~v~l~TN-G--~ll~~~~~~l-~~~~~~~i~V-SL 131 (318)
T TIGR03470 62 EECLRAVDECGAPVVSIPG-----GEPLLHPEIDEIVRGLVARKKFVYLCTN-A--LLLEKKLDKF-EPSPYLTFSV-HL 131 (318)
T ss_pred HHHHHHHHHcCCCEEEEeC-----ccccccccHHHHHHHHHHcCCeEEEecC-c--eehHHHHHHH-HhCCCcEEEE-EE
Confidence 3444444566777776653 6777778899999999999988776543 2 2232 33333 3344444444 54
Q ss_pred CCCCCCCCch---hhHhHHH----HhcccCC-CcEEEecCcccccccCCCCCCCchhHHHHHHHhcCCCcEEEccCCCCC
Q 019335 230 AFCKPPSNDE---ESLAFSN----LLKLSRF-PQVYVKFSALFRVSRMPFPYQDLSSPLSQVVSSFGANRVMWGSDFPYV 301 (342)
Q Consensus 230 G~~~p~~~~~---~~~~~~~----~~~l~~~-~Nvy~~~S~~~~~~~~~~~~~~~~~~l~~~i~~~G~dRilfGSD~P~~ 301 (342)
-+. ....+. ....|+. +..+.+. -++.+.+.-.... ...++.+.++.+ ...|.+.+.+.--+|+.
T Consensus 132 DG~-~e~hd~~~~~~g~f~~~l~~I~~l~~~G~~v~v~~tv~~~~-----n~~ei~~~~~~~-~~lGv~~i~i~p~~~~~ 204 (318)
T TIGR03470 132 DGL-REHHDASVCREGVFDRAVEAIREAKARGFRVTTNTTLFNDT-----DPEEVAEFFDYL-TDLGVDGMTISPGYAYE 204 (318)
T ss_pred ecC-chhhchhhcCCCcHHHHHHHHHHHHHCCCcEEEEEEEeCCC-----CHHHHHHHHHHH-HHcCCCEEEEecCcccc
Confidence 432 111110 0112333 2223222 2344443211111 122343444444 66799999887666653
No 494
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=20.81 E-value=6e+02 Score=22.55 Aligned_cols=138 Identities=15% Similarity=0.034 Sum_probs=76.0
Q ss_pred EEEcCCCCcchHHHHHHHHHhcCCceEEEecCCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEEeccCCCCCHHHHHHHHH
Q 019335 138 CCLANPAEDVIGIKQLEQLILKDGFRAVRFNPYLWPSGQQMTNEVGKAMFSKAGELGVPVGFMCMKGLNLHISEIEELCT 217 (342)
Q Consensus 138 ~~~i~p~~~~~~~~eler~~~~~g~~Gvk~~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH~~~~~~~~~~~l~~l~~ 217 (342)
+..++|...+ -.+-++++ .+.|+.||-++.... . ..+....++++|.++|+.+.+-.... ...+.+..+++
T Consensus 80 M~y~n~~~~~-~~~~i~~~-~~~Gadgvii~dlp~---e--~~~~~~~~~~~~~~~Gl~~~~~v~p~--T~~e~l~~~~~ 150 (244)
T PRK13125 80 MTYLEDYVDS-LDNFLNMA-RDVGADGVLFPDLLI---D--YPDDLEKYVEIIKNKGLKPVFFTSPK--FPDLLIHRLSK 150 (244)
T ss_pred EEecchhhhC-HHHHHHHH-HHcCCCEEEECCCCC---C--cHHHHHHHHHHHHHcCCCEEEEECCC--CCHHHHHHHHH
Confidence 4666773221 22345555 678999999884210 1 12467789999999999987766532 34667888888
Q ss_pred hCCCCcEEecccCCCCCCCCchhhHhHHHHhcccCCCcEEEecCcccccccCCCCCCCchhHHHHHHHhcCCCcEEEccC
Q 019335 218 EFPSTTVLLDHLAFCKPPSNDEESLAFSNLLKLSRFPQVYVKFSALFRVSRMPFPYQDLSSPLSQVVSSFGANRVMWGSD 297 (342)
Q Consensus 218 ~~P~lk~vl~H~G~~~p~~~~~~~~~~~~~~~l~~~~Nvy~~~S~~~~~~~~~~~~~~~~~~l~~~i~~~G~dRilfGSD 297 (342)
.-+++-++ .-.++..-..........+++.++...-.+.++..-- . ...++.+++ .|+|-++-||-
T Consensus 151 ~~~~~l~m-sv~~~~g~~~~~~~~~~i~~lr~~~~~~~i~v~gGI~-~-----------~e~i~~~~~-~gaD~vvvGSa 216 (244)
T PRK13125 151 LSPLFIYY-GLRPATGVPLPVSVERNIKRVRNLVGNKYLVVGFGLD-S-----------PEDARDALS-AGADGVVVGTA 216 (244)
T ss_pred hCCCEEEE-EeCCCCCCCchHHHHHHHHHHHHhcCCCCEEEeCCcC-C-----------HHHHHHHHH-cCCCEEEECHH
Confidence 87765433 4333211111111111122233332211266554321 0 134666655 48999999986
Q ss_pred C
Q 019335 298 F 298 (342)
Q Consensus 298 ~ 298 (342)
.
T Consensus 217 i 217 (244)
T PRK13125 217 F 217 (244)
T ss_pred H
Confidence 3
No 495
>PRK10401 DNA-binding transcriptional regulator GalS; Provisional
Probab=20.78 E-value=6.6e+02 Score=23.05 Aligned_cols=127 Identities=11% Similarity=0.115 Sum_probs=66.4
Q ss_pred HHHHHHhHHCCCceEEEeCCCCCccchHHHHHHHHhCCCcEEEEEE---------cCCCCcchHHHHHHHHHhcCCceEE
Q 019335 95 DFLLQCMEEASVDGALIVQPINHKFDHSLVTSVLKKYPSKFVGCCL---------ANPAEDVIGIKQLEQLILKDGFRAV 165 (342)
Q Consensus 95 ~~ll~~md~~GI~~~v~~~~~~~~~~N~~~~~~~~~~p~r~~g~~~---------i~p~~~~~~~~eler~~~~~g~~Gv 165 (342)
..+++.+...++++.|+++.. .+.+.+.++.+..|. ++.+.. |..++ ..+..+.-+++.+.|.+-|
T Consensus 105 ~~~i~~l~~~~vdGiIi~~~~---~~~~~~~~~~~~~p~-vV~i~~~~~~~~~~~V~~D~-~~~~~~a~~~L~~~G~~~I 179 (346)
T PRK10401 105 RHAIEVLIRQRCNALIVHSKA---LSDDELAQFMDQIPG-MVLINRVVPGYAHRCVCLDN-VSGARMATRMLLNNGHQRI 179 (346)
T ss_pred HHHHHHHHhcCCCEEEEeCCC---CChHHHHHHHhcCCC-EEEEecccCCCCCCEEEECc-HHHHHHHHHHHHHCCCCeE
Confidence 356777888899999987531 123344455554442 221211 11122 1233444444456787766
Q ss_pred EecCCCCCCCCcCCcHHHHHHHHHHhhhCCeEEE-EeccCCCCC----HHHHHHHHHhCCCCcEEeccc
Q 019335 166 RFNPYLWPSGQQMTNEVGKAMFSKAGELGVPVGF-MCMKGLNLH----ISEIEELCTEFPSTTVLLDHL 229 (342)
Q Consensus 166 k~~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~i-H~~~~~~~~----~~~l~~l~~~~P~lk~vl~H~ 229 (342)
.+.... ........+...+-+.++++|+++.. +...+ ... ...+.+++++.|+...|++.-
T Consensus 180 ~~i~~~--~~~~~~~~R~~Gf~~al~~~gi~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~ai~~~n 245 (346)
T PRK10401 180 GYLSSS--HGIEDDAMRRAGWMSALKEQGIIPPESWIGTG-TPDMQGGEAAMVELLGRNLQLTAVFAYN 245 (346)
T ss_pred EEEeCC--CcCcchHHHHHHHHHHHHHcCCCCChhheecC-CCChHHHHHHHHHHHcCCCCCcEEEECC
Confidence 654321 12223456788888999999986421 11111 111 234566676666666666543
No 496
>cd00617 Tnase_like Tryptophanase family (Tnase). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia.
Probab=20.77 E-value=2.4e+02 Score=27.67 Aligned_cols=52 Identities=21% Similarity=0.225 Sum_probs=35.4
Q ss_pred HHHHHHHHhcCC---ceEEEecCCCCC-CCCcCCcHHHHHHHHHHhhhCCeEEEEe
Q 019335 150 IKQLEQLILKDG---FRAVRFNPYLWP-SGQQMTNEVGKAMFSKAGELGVPVGFMC 201 (342)
Q Consensus 150 ~~eler~~~~~g---~~Gvk~~~~~~~-~g~~l~~~~~~~~~~~a~e~~lpv~iH~ 201 (342)
.+.|++.+.+.+ .+.|.+.....+ .|..++-+.++.+.+.|.++|++|..-.
T Consensus 138 ~e~Le~~I~~~~~~~~~~I~v~~p~N~~gG~~~s~~~l~~i~eia~~~gi~li~Da 193 (431)
T cd00617 138 VAKLEKLIDEVGAENIPYIVLTITNNTAGGQPVSMANLREVRELAHKYGIPVVLDA 193 (431)
T ss_pred HHHHHHHhCcccCCCccEEEEECCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEc
Confidence 678888876543 445554321122 2666777789999999999999996543
No 497
>PF14542 Acetyltransf_CG: GCN5-related N-acetyl-transferase; PDB: 2H5M_A 2Q44_A 1XMT_A 2Q4Y_A 2IL4_A 2EVN_A 1R57_A.
Probab=20.76 E-value=90 Score=22.49 Aligned_cols=40 Identities=25% Similarity=0.345 Sum_probs=30.5
Q ss_pred CCcCCcHHHHHHHHHHhhhCCeEEEEeccCCCCCHHHHHHHHHhCCCC
Q 019335 175 GQQMTNEVGKAMFSKAGELGVPVGFMCMKGLNLHISEIEELCTEFPST 222 (342)
Q Consensus 175 g~~l~~~~~~~~~~~a~e~~lpv~iH~~~~~~~~~~~l~~l~~~~P~l 222 (342)
|.-+....++..++.+++.|+.|.-.| +.+...++++|+.
T Consensus 36 GqGia~~L~~~~l~~a~~~~~kv~p~C--------~y~~~~~~~hpey 75 (78)
T PF14542_consen 36 GQGIAKKLVEAALDYARENGLKVVPTC--------SYVAKYFRRHPEY 75 (78)
T ss_dssp TTTHHHHHHHHHHHHHHHTT-EEEETS--------HHHHHHHHH-GGG
T ss_pred CCcHHHHHHHHHHHHHHHCCCEEEEEC--------HHHHHHHHhCccc
Confidence 666777889999999999999997655 3677888888853
No 498
>PTZ00433 tyrosine aminotransferase; Provisional
Probab=20.65 E-value=5.6e+02 Score=24.52 Aligned_cols=50 Identities=20% Similarity=0.315 Sum_probs=35.3
Q ss_pred HHHHHHHHhcCCceEEEe-cCCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEEe
Q 019335 150 IKQLEQLILKDGFRAVRF-NPYLWPSGQQMTNEVGKAMFSKAGELGVPVGFMC 201 (342)
Q Consensus 150 ~~eler~~~~~g~~Gvk~-~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH~ 201 (342)
.++|++.+. .+.+.|-+ +|. .|.|..+..+.+..+.+.|.++|+.|.+--
T Consensus 167 ~~~l~~~~~-~~~~~i~~~~p~-NPtG~~~s~~~~~~l~~~a~~~~~~ii~De 217 (412)
T PTZ00433 167 LDEIRRLVD-DRTKALIMTNPS-NPCGSNFSRKHVEDIIRLCEELRLPLISDE 217 (412)
T ss_pred HHHHHHHhc-cCceEEEEeCCC-CCCCcccCHHHHHHHHHHHHHcCCeEEEec
Confidence 466776653 35666654 333 356777888899999999999999886553
No 499
>cd00389 microbial_RNases microbial_RNases. Ribonucleases (RNAses) cleave phosphodiester bonds in RNA and are essential for both non-specific RNA degradation and for numerous forms of RNA processing. The alignment contains fungal RNases (U2, T1, F1, Th, Pb, N1, and Ms) and bacterial RNases (barnase, binase, RNase Sa) , the majority of which are guanyl specific and fungal ribotoxins.
Probab=20.60 E-value=60 Score=23.20 Aligned_cols=13 Identities=54% Similarity=0.925 Sum_probs=10.8
Q ss_pred HhcCCCcEEEccC
Q 019335 285 SSFGANRVMWGSD 297 (342)
Q Consensus 285 ~~~G~dRilfGSD 297 (342)
..=|++||++|+|
T Consensus 49 ~~rGa~RIV~~~~ 61 (71)
T cd00389 49 GSRGADRVVYGGD 61 (71)
T ss_pred CCCCCCEEEECCC
Confidence 3448999999998
No 500
>PRK06855 aminotransferase; Validated
Probab=20.58 E-value=2.7e+02 Score=27.12 Aligned_cols=50 Identities=18% Similarity=0.244 Sum_probs=35.8
Q ss_pred HHHHHHHHhc-CCceEEEe-cCCCCCCCCcCCcHHHHHHHHHHhhhCCeEEEE
Q 019335 150 IKQLEQLILK-DGFRAVRF-NPYLWPSGQQMTNEVGKAMFSKAGELGVPVGFM 200 (342)
Q Consensus 150 ~~eler~~~~-~g~~Gvk~-~~~~~~~g~~l~~~~~~~~~~~a~e~~lpv~iH 200 (342)
.++|++.+.. ...+.+-+ +|. .|.|..+..++...+.+.|+++|+.|..-
T Consensus 159 ~~~l~~~~~~~~~~~~i~l~~P~-NPTG~~~s~~~~~~l~~~a~~~~~~II~D 210 (433)
T PRK06855 159 LDDLENKVKYNPSIAGILLINPD-NPTGAVYPKEILREIVDIAREYDLFIICD 210 (433)
T ss_pred HHHHHHHHhcCCCceEEEEECCC-CCCCcCCCHHHHHHHHHHHHHcCCEEEEe
Confidence 4677776643 34555543 343 46788899999999999999999988643
Done!