Query 019338
Match_columns 342
No_of_seqs 203 out of 823
Neff 4.0
Searched_HMMs 46136
Date Fri Mar 29 08:39:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019338.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019338hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00083 HLH Helix-loop-helix d 99.4 8.8E-13 1.9E-17 96.5 4.8 55 266-320 4-60 (60)
2 smart00353 HLH helix loop heli 99.3 7.9E-12 1.7E-16 90.1 6.2 49 271-320 1-52 (53)
3 PF00010 HLH: Helix-loop-helix 99.3 8.2E-12 1.8E-16 91.5 5.4 49 268-316 3-55 (55)
4 KOG1318 Helix loop helix trans 99.1 6.3E-11 1.4E-15 119.0 7.0 60 262-321 229-291 (411)
5 KOG1319 bHLHZip transcription 98.9 1.1E-09 2.4E-14 100.7 4.5 65 267-334 63-133 (229)
6 KOG4304 Transcriptional repres 98.4 2E-07 4.4E-12 88.7 3.3 52 268-320 34-93 (250)
7 KOG3561 Aryl-hydrocarbon recep 98.0 5.3E-06 1.1E-10 89.8 5.0 52 267-318 21-75 (803)
8 KOG2588 Predicted DNA-binding 97.9 1E-05 2.2E-10 88.4 3.7 66 265-330 275-340 (953)
9 KOG2483 Upstream transcription 97.8 4.9E-05 1.1E-09 72.1 6.6 54 267-320 60-115 (232)
10 PLN03217 transcription factor 97.6 0.00019 4E-09 59.2 6.1 53 275-331 16-74 (93)
11 KOG0561 bHLH transcription fac 97.1 0.0002 4.3E-09 70.6 1.5 52 268-320 62-115 (373)
12 KOG4029 Transcription factor H 96.6 0.0022 4.9E-08 59.6 4.0 53 268-320 111-166 (228)
13 KOG3960 Myogenic helix-loop-he 96.3 0.0072 1.6E-07 58.5 6.0 52 269-320 121-173 (284)
14 KOG3910 Helix loop helix trans 95.5 0.014 3E-07 61.1 4.0 66 267-340 527-595 (632)
15 KOG4447 Transcription factor T 88.5 0.25 5.4E-06 45.1 1.7 52 268-320 80-133 (173)
16 KOG3558 Hypoxia-inducible fact 83.2 0.86 1.9E-05 49.8 2.7 43 271-314 51-97 (768)
17 KOG3560 Aryl-hydrocarbon recep 80.6 1.4 3E-05 47.2 3.1 39 274-313 33-75 (712)
18 KOG3559 Transcriptional regula 72.6 3.5 7.6E-05 43.1 3.4 43 272-315 7-53 (598)
19 KOG3898 Transcription factor N 45.7 18 0.00039 34.9 2.8 49 268-317 74-125 (254)
20 PF13334 DUF4094: Domain of un 41.2 52 0.0011 27.5 4.5 26 305-333 68-93 (95)
21 KOG3584 cAMP response element 37.4 42 0.00091 33.9 4.0 43 275-332 290-338 (348)
22 KOG3582 Mlx interactors and re 30.4 15 0.00032 40.8 -0.5 54 267-320 652-709 (856)
23 KOG3582 Mlx interactors and re 28.0 21 0.00046 39.6 0.3 61 264-330 785-849 (856)
24 PF05781 MRVI1: MRVI1 protein; 27.8 1.2E+02 0.0027 32.7 5.8 56 268-330 220-275 (538)
25 KOG4447 Transcription factor T 24.1 62 0.0014 29.9 2.4 44 273-317 29-74 (173)
26 KOG4395 Transcription factor A 23.4 1.2E+02 0.0026 30.2 4.3 52 268-319 176-229 (285)
27 PF10465 Inhibitor_I24: PinA p 20.6 77 0.0017 28.4 2.2 19 301-319 121-139 (140)
No 1
>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and
Probab=99.35 E-value=8.8e-13 Score=96.53 Aligned_cols=55 Identities=35% Similarity=0.589 Sum_probs=49.5
Q ss_pred cCCcchhhHHHHHHHHHHHHHHHhccCCCC--CcCCChhhHHHHHHHHHHHHHHHHH
Q 019338 266 ATNSHSLAERVRREKISERMRLLQELVPGC--NKITGKAVMLDEIINYVQSLQQQVE 320 (342)
Q Consensus 266 a~~~HslaERrRRekIner~~~Lq~LVP~~--~K~~dKAsIL~eaIdYIk~LQ~qVq 320 (342)
.+..|+..||+||++||+.|..|+.|||.+ ...++|+.||+.||+||++|+.+++
T Consensus 4 ~r~~~~~~Er~RR~~~n~~~~~L~~llp~~~~~~k~~k~~iL~~a~~yI~~L~~~~~ 60 (60)
T cd00083 4 RREAHNLRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELLQ 60 (60)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 346899999999999999999999999998 2445999999999999999999863
No 2
>smart00353 HLH helix loop helix domain.
Probab=99.28 E-value=7.9e-12 Score=90.11 Aligned_cols=49 Identities=39% Similarity=0.569 Sum_probs=44.5
Q ss_pred hhhHHHHHHHHHHHHHHHhccCCC---CCcCCChhhHHHHHHHHHHHHHHHHH
Q 019338 271 SLAERVRREKISERMRLLQELVPG---CNKITGKAVMLDEIINYVQSLQQQVE 320 (342)
Q Consensus 271 slaERrRRekIner~~~Lq~LVP~---~~K~~dKAsIL~eaIdYIk~LQ~qVq 320 (342)
++.||+||++||+.|..|+.|||. ..+ .+|++||+.||+||++|+.+++
T Consensus 1 n~~Er~RR~~~n~~~~~L~~lip~~~~~~k-~~k~~iL~~ai~yi~~L~~~~~ 52 (53)
T smart00353 1 NARERRRRRKINEAFDELRSLLPTLPNNKK-LSKAEILRLAIEYIKSLQEELQ 52 (53)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-CCHHHHHHHHHHHHHHHHHHHh
Confidence 468999999999999999999995 445 4999999999999999999986
No 3
>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt).; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....
Probab=99.26 E-value=8.2e-12 Score=91.46 Aligned_cols=49 Identities=37% Similarity=0.695 Sum_probs=45.1
Q ss_pred CcchhhHHHHHHHHHHHHHHHhccCCCC----CcCCChhhHHHHHHHHHHHHH
Q 019338 268 NSHSLAERVRREKISERMRLLQELVPGC----NKITGKAVMLDEIINYVQSLQ 316 (342)
Q Consensus 268 ~~HslaERrRRekIner~~~Lq~LVP~~----~K~~dKAsIL~eaIdYIk~LQ 316 (342)
..|+..||+||++||+.|..|+.|||.+ ...++|+.||+.||+||++||
T Consensus 3 ~~h~~~Er~RR~~i~~~~~~L~~llp~~~~~~~~k~~K~~iL~~ai~yI~~Lq 55 (55)
T PF00010_consen 3 QKHNERERRRRDRINDCFDELRELLPSCSAGSSRKLSKASILQKAIDYIKQLQ 55 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCSSHHCCTTSSSSHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhccchhccccccCCHHHHHHHHHHHHHHhC
Confidence 5799999999999999999999999987 233699999999999999997
No 4
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=99.14 E-value=6.3e-11 Score=118.99 Aligned_cols=60 Identities=32% Similarity=0.619 Sum_probs=51.8
Q ss_pred cCCCcCCcchhhHHHHHHHHHHHHHHHhccCCCCCc---CCChhhHHHHHHHHHHHHHHHHHH
Q 019338 262 KRGQATNSHSLAERVRREKISERMRLLQELVPGCNK---ITGKAVMLDEIINYVQSLQQQVEV 321 (342)
Q Consensus 262 kr~~a~~~HslaERrRRekIner~~~Lq~LVP~~~K---~~dKAsIL~eaIdYIk~LQ~qVq~ 321 (342)
|-.++++.|++.|||||++||++|++|..|||.|.. ..+|..||..+++||+.||+..+.
T Consensus 229 rdr~Krd~HNeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q~ 291 (411)
T KOG1318|consen 229 RDRRKRDNHNEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQR 291 (411)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHHH
Confidence 334455899999999999999999999999999942 147999999999999999997663
No 5
>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription]
Probab=98.90 E-value=1.1e-09 Score=100.74 Aligned_cols=65 Identities=29% Similarity=0.455 Sum_probs=53.5
Q ss_pred CCcchhhHHHHHHHHHHHHHHHhccCCCCCc------CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 019338 267 TNSHSLAERVRREKISERMRLLQELVPGCNK------ITGKAVMLDEIINYVQSLQQQVEVCYFMAVKWRHFNL 334 (342)
Q Consensus 267 ~~~HslaERrRRekIner~~~Lq~LVP~~~K------~~dKAsIL~eaIdYIk~LQ~qVq~l~~Ls~kl~~~n~ 334 (342)
+..|.-+||+||+-|+..+..|+.|||.|.. ++.||.||..+|+||.+|.+++. .--.++++||-
T Consensus 63 r~aHtqaEqkRRdAIk~GYddLq~LvP~cq~~ds~g~KlskA~ILqksidyi~~L~~~k~---kqe~e~s~L~k 133 (229)
T KOG1319|consen 63 RRAHTQAEQKRRDAIKRGYDDLQTLVPTCQQQDSIGQKLSKAIILQKTIDYIQFLHKEKK---KQEEEVSTLRK 133 (229)
T ss_pred HHHHHHHHHHHHHHHHhchHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 4689999999999999999999999998742 24799999999999999998766 44445554443
No 6
>KOG4304 consensus Transcriptional repressors of the hairy/E(spl) family (contains HLH) [Transcription]
Probab=98.38 E-value=2e-07 Score=88.68 Aligned_cols=52 Identities=29% Similarity=0.455 Sum_probs=46.7
Q ss_pred CcchhhHHHHHHHHHHHHHHHhccCCCC--------CcCCChhhHHHHHHHHHHHHHHHHH
Q 019338 268 NSHSLAERVRREKISERMRLLQELVPGC--------NKITGKAVMLDEIINYVQSLQQQVE 320 (342)
Q Consensus 268 ~~HslaERrRRekIner~~~Lq~LVP~~--------~K~~dKAsIL~eaIdYIk~LQ~qVq 320 (342)
..|-+.|||||+|||+.|.+|++|||.+ .| .+||.||+-|++|++.||.+.+
T Consensus 34 ~~Kpl~EKkRRaRIN~~L~eLK~Li~e~~~~~~~~~sk-lEKAdILEltV~hL~~l~~~~~ 93 (250)
T KOG4304|consen 34 VRKPLLEKKRRARINRCLDELKDLIPEALKKDGQRHSK-LEKADILELTVNHLRQLQRSQQ 93 (250)
T ss_pred hcchhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhh-hHHHHHHHHHHHHHHHHhcccc
Confidence 5788999999999999999999999965 34 3899999999999999998765
No 7
>KOG3561 consensus Aryl-hydrocarbon receptor nuclear translocator [Transcription]
Probab=98.01 E-value=5.3e-06 Score=89.75 Aligned_cols=52 Identities=21% Similarity=0.375 Sum_probs=48.4
Q ss_pred CCcchhhHHHHHHHHHHHHHHHhccCCCCC---cCCChhhHHHHHHHHHHHHHHH
Q 019338 267 TNSHSLAERVRREKISERMRLLQELVPGCN---KITGKAVMLDEIINYVQSLQQQ 318 (342)
Q Consensus 267 ~~~HslaERrRRekIner~~~Lq~LVP~~~---K~~dKAsIL~eaIdYIk~LQ~q 318 (342)
+..|+.+|||||+++|.-|.+|-+|||.|. .++||-+||..||..|+.++.+
T Consensus 21 Re~~~~~EKrRRdq~N~yI~ELs~Mvp~~~~~~RK~DK~tVLr~aV~~lr~~k~~ 75 (803)
T KOG3561|consen 21 RENRSEIEKRRRDQMNKYIEELSEMVPTNASLSRKPDKLTVLRMAVDHLRLIKEQ 75 (803)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHhhhcchhcccCchHHHHHHHHHHHHHHHhhh
Confidence 479999999999999999999999999997 5569999999999999999885
No 8
>KOG2588 consensus Predicted DNA-binding protein [Transcription]
Probab=97.86 E-value=1e-05 Score=88.39 Aligned_cols=66 Identities=24% Similarity=0.430 Sum_probs=56.8
Q ss_pred CcCCcchhhHHHHHHHHHHHHHHHhccCCCCCcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019338 265 QATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEVCYFMAVKWR 330 (342)
Q Consensus 265 ~a~~~HslaERrRRekIner~~~Lq~LVP~~~K~~dKAsIL~eaIdYIk~LQ~qVq~l~~Ls~kl~ 330 (342)
..+..|+++|||-|..||++|..|++|||+..-+..|..+|..||+||++||..-+.+....+.+.
T Consensus 275 ~kRtAHN~IEKRYRsSINDKI~eLk~lV~g~~aKl~kSavLr~ai~~i~dl~~~nq~lk~~~~~l~ 340 (953)
T KOG2588|consen 275 EKRTAHNIIEKRYRSSINDKIIELKDLVPGTEAKLNKSAVLRKAIDYIEDLQGYNQKLKLENASLR 340 (953)
T ss_pred cccchhhHHHHHhhcchhHHHHHHHHhcCccHhhhhhhhhHHHHHHHHHHhhccccccchhhhhhh
Confidence 457899999999999999999999999998876669999999999999999998776555444433
No 9
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]
Probab=97.78 E-value=4.9e-05 Score=72.06 Aligned_cols=54 Identities=26% Similarity=0.377 Sum_probs=46.5
Q ss_pred CCcchhhHHHHHHHHHHHHHHHhccCCCCCcCCC--hhhHHHHHHHHHHHHHHHHH
Q 019338 267 TNSHSLAERVRREKISERMRLLQELVPGCNKITG--KAVMLDEIINYVQSLQQQVE 320 (342)
Q Consensus 267 ~~~HslaERrRRekIner~~~Lq~LVP~~~K~~d--KAsIL~eaIdYIk~LQ~qVq 320 (342)
+..|+..||+||..|.+.|..|+.+||.....+. .++||+.|+.||+.|+.+..
T Consensus 60 R~~HN~LEk~RRahlk~~~~~Lk~~vP~~~~~~~~t~lsiL~kA~~~i~~l~~~~~ 115 (232)
T KOG2483|consen 60 RAHHNALEKRRRAHLKDCFESLKDSVPLLNGETRSTTLSILDKALEHIQSLERKSA 115 (232)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHhCCCCCCcchhhhhHhhhhHHHHHHHHHhHHH
Confidence 4699999999999999999999999996543322 58999999999999998655
No 10
>PLN03217 transcription factor ATBS1; Provisional
Probab=97.56 E-value=0.00019 Score=59.24 Aligned_cols=53 Identities=25% Similarity=0.522 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHhccCCCC------CcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019338 275 RVRREKISERMRLLQELVPGC------NKITGKAVMLDEIINYVQSLQQQVEVCYFMAVKWRH 331 (342)
Q Consensus 275 RrRRekIner~~~Lq~LVP~~------~K~~dKAsIL~eaIdYIk~LQ~qVq~l~~Ls~kl~~ 331 (342)
|-=-+.|++-+..||.|+|.. .++ .-+-+|+||.+||+.|+++|. .|++.|..
T Consensus 16 risddqi~dLvsKLq~llPe~r~~r~s~k~-saskvLqEtC~YIrsLhrEvD---dLSerLs~ 74 (93)
T PLN03217 16 RISEDQINDLIIKLQQLLPELRDSRRSDKV-SAARVLQDTCNYIRNLHREVD---DLSERLSE 74 (93)
T ss_pred CCCHHHHHHHHHHHHHHChHHHhhhccccc-cHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 333578999999999999953 343 677799999999999999999 66665553
No 11
>KOG0561 consensus bHLH transcription factor [Transcription]
Probab=97.11 E-value=0.0002 Score=70.62 Aligned_cols=52 Identities=25% Similarity=0.437 Sum_probs=46.2
Q ss_pred CcchhhHHHHHHHHHHHHHHHhccCCC--CCcCCChhhHHHHHHHHHHHHHHHHH
Q 019338 268 NSHSLAERVRREKISERMRLLQELVPG--CNKITGKAVMLDEIINYVQSLQQQVE 320 (342)
Q Consensus 268 ~~HslaERrRRekIner~~~Lq~LVP~--~~K~~dKAsIL~eaIdYIk~LQ~qVq 320 (342)
..-+..||||=.-||-.|..||.|+|. +.|+ .||.||+.+.+||..|+.+..
T Consensus 62 eIANsNERRRMQSINAGFqsLr~LlPr~eGEKL-SKAAILQQTa~yI~~Le~~Kt 115 (373)
T KOG0561|consen 62 EIANSNERRRMQSINAGFQSLRALLPRKEGEKL-SKAAILQQTADYIHQLEGHKT 115 (373)
T ss_pred HhhcchHHHHHHhhhHHHHHHHHhcCcccchhh-HHHHHHHHHHHHHHHHHhccc
Confidence 455677999999999999999999995 4665 999999999999999998765
No 12
>KOG4029 consensus Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1 [Transcription]
Probab=96.57 E-value=0.0022 Score=59.60 Aligned_cols=53 Identities=21% Similarity=0.303 Sum_probs=45.9
Q ss_pred CcchhhHHHHHHHHHHHHHHHhccCCCC---CcCCChhhHHHHHHHHHHHHHHHHH
Q 019338 268 NSHSLAERVRREKISERMRLLQELVPGC---NKITGKAVMLDEIINYVQSLQQQVE 320 (342)
Q Consensus 268 ~~HslaERrRRekIner~~~Lq~LVP~~---~K~~dKAsIL~eaIdYIk~LQ~qVq 320 (342)
..++..||.|=.-+|..|..||.+||.. .|+..|..+|..||.||++|+.-++
T Consensus 111 ~~~n~RER~Rv~~vN~~f~~Lr~~lP~~~~~~kklSKveTLr~A~~YI~~L~~lL~ 166 (228)
T KOG4029|consen 111 QARNARERQRVQSVNSAFAELRALLPTEPPQSKKLSKVETLRLATSYIRYLTKLLA 166 (228)
T ss_pred hhhhhhhhhcccchhhhhHHHHhcCCCCCCcccccCcccchHHHHHHHHHHHHHhc
Confidence 4566679999999999999999999942 4456999999999999999998766
No 13
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]
Probab=96.35 E-value=0.0072 Score=58.49 Aligned_cols=52 Identities=25% Similarity=0.375 Sum_probs=44.0
Q ss_pred cchhhHHHHHHHHHHHHHHHhc-cCCCCCcCCChhhHHHHHHHHHHHHHHHHH
Q 019338 269 SHSLAERVRREKISERMRLLQE-LVPGCNKITGKAVMLDEIINYVQSLQQQVE 320 (342)
Q Consensus 269 ~HslaERrRRekIner~~~Lq~-LVP~~~K~~dKAsIL~eaIdYIk~LQ~qVq 320 (342)
.-.+.||||=.|+||-|.+|+. -+++-++-.-|.-||.-||+||..||.-++
T Consensus 121 AATMRERRRLkKVNEAFE~LKRrT~~NPNQRLPKVEILRsAI~YIE~Lq~LL~ 173 (284)
T KOG3960|consen 121 AATMRERRRLKKVNEAFETLKRRTSSNPNQRLPKVEILRSAIRYIERLQALLQ 173 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCccccccHHHHHHHHHHHHHHHHHHHH
Confidence 4457799999999999999975 446666555899999999999999998777
No 14
>KOG3910 consensus Helix loop helix transcription factor [Transcription]
Probab=95.47 E-value=0.014 Score=61.13 Aligned_cols=66 Identities=27% Similarity=0.359 Sum_probs=53.1
Q ss_pred CCcchhhHHHHHHHHHHHHHHHhccCCC---CCcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccc
Q 019338 267 TNSHSLAERVRREKISERMRLLQELVPG---CNKITGKAVMLDEIINYVQSLQQQVEVCYFMAVKWRHFNLQFTCLV 340 (342)
Q Consensus 267 ~~~HslaERrRRekIner~~~Lq~LVP~---~~K~~dKAsIL~eaIdYIk~LQ~qVq~l~~Ls~kl~~~n~~~~~l~ 340 (342)
+...+..||.|=.-|||-|++|..+.-- ..|.--|..||..|+.-|-.|++||+ -..|||...||.
T Consensus 527 R~aNNARERlRVRDINeAfKELGRMCqlHlkSeKpQTKLgILhqAVsVIlsLEQQVR--------ERNLNPKaaclk 595 (632)
T KOG3910|consen 527 RMANNARERLRVRDINEAFKELGRMCQLHLKSEKPQTKLGILHQAVSVILSLEQQVR--------ERNLNPKAACLK 595 (632)
T ss_pred HhhhhhhhheehhhHHHHHHHHHHHHHHhhcccCcchhhhHHHHHHHHHHHHHHHHH--------HccCChhhhhhh
Confidence 3678888999999999999999998752 23333589999999999999999998 246677666663
No 15
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=88.54 E-value=0.25 Score=45.08 Aligned_cols=52 Identities=23% Similarity=0.387 Sum_probs=44.2
Q ss_pred CcchhhHHHHHHHHHHHHHHHhccCCCC--CcCCChhhHHHHHHHHHHHHHHHHH
Q 019338 268 NSHSLAERVRREKISERMRLLQELVPGC--NKITGKAVMLDEIINYVQSLQQQVE 320 (342)
Q Consensus 268 ~~HslaERrRRekIner~~~Lq~LVP~~--~K~~dKAsIL~eaIdYIk~LQ~qVq 320 (342)
--|++-||+|-..+|+-|..||.++|.. .|. .|.--|+-|-.||-+|=+-.+
T Consensus 80 v~anvrerqRtqsLn~AF~~lr~iiptlPsdkl-SkiqtLklA~ryidfl~~vl~ 133 (173)
T KOG4447|consen 80 VMANVRERQRTQSLNEAFAALRKIIPTLPSDKL-SKIQTLKLAARYIDFLYQVLQ 133 (173)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHhhcCCCCcccc-ccccchhhcccCCchhhhccc
Confidence 4789999999999999999999999964 564 788889999999998865433
No 16
>KOG3558 consensus Hypoxia-inducible factor 1/Neuronal PAS domain protein NPAS1 [Signal transduction mechanisms; Transcription]
Probab=83.20 E-value=0.86 Score=49.75 Aligned_cols=43 Identities=30% Similarity=0.383 Sum_probs=37.0
Q ss_pred hhhHHHHHHHHHHHHHHHhccCCCC----CcCCChhhHHHHHHHHHHH
Q 019338 271 SLAERVRREKISERMRLLQELVPGC----NKITGKAVMLDEIINYVQS 314 (342)
Q Consensus 271 slaERrRRekIner~~~Lq~LVP~~----~K~~dKAsIL~eaIdYIk~ 314 (342)
--+.|.||.|=|+-|.+|..++|-- ..+ |||+|+.-||-|++-
T Consensus 51 RdAARsRRsKEn~~FyeLa~~lPlp~aisshL-DkaSimRLtISyLRl 97 (768)
T KOG3558|consen 51 RDAARSRRSKENEEFYELAKLLPLPAAISSHL-DKASIMRLTISYLRL 97 (768)
T ss_pred hhhhhhhcccchHHHHHHHHhCCCcchhhhhh-hhHHHHHHHHHHHHH
Confidence 3468999999999999999999932 454 999999999999873
No 17
>KOG3560 consensus Aryl-hydrocarbon receptor [Transcription]
Probab=80.56 E-value=1.4 Score=47.22 Aligned_cols=39 Identities=21% Similarity=0.439 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHhccCCC----CCcCCChhhHHHHHHHHHH
Q 019338 274 ERVRREKISERMRLLQELVPG----CNKITGKAVMLDEIINYVQ 313 (342)
Q Consensus 274 ERrRRekIner~~~Lq~LVP~----~~K~~dKAsIL~eaIdYIk 313 (342)
-+|-|+|+|-.+..|..|+|- .+|+ ||.+||.-++-|++
T Consensus 33 SKRHRdRLNaELD~lAsLLPfpqdiisKL-DkLSVLRLSVSyLr 75 (712)
T KOG3560|consen 33 SKRHRDRLNAELDHLASLLPFPQDIISKL-DKLSVLRLSVSYLR 75 (712)
T ss_pred chhHHHHhhhHHHHHHHhcCCCHHHHhhh-hhhhhhhhhHHHHH
Confidence 467789999999999999994 4776 99999999999986
No 18
>KOG3559 consensus Transcriptional regulator SIM1 [Transcription]
Probab=72.63 E-value=3.5 Score=43.11 Aligned_cols=43 Identities=28% Similarity=0.366 Sum_probs=37.0
Q ss_pred hhHHHHHHHHHHHHHHHhccCCCC----CcCCChhhHHHHHHHHHHHH
Q 019338 272 LAERVRREKISERMRLLQELVPGC----NKITGKAVMLDEIINYVQSL 315 (342)
Q Consensus 272 laERrRRekIner~~~Lq~LVP~~----~K~~dKAsIL~eaIdYIk~L 315 (342)
-+.|.||++=|..|.+|.+|+|-. .++ ||++|+.-|.-|||--
T Consensus 7 naA~tRRekEN~EF~eLAklLPLa~AItsQl-DKasiiRLtTsYlKmr 53 (598)
T KOG3559|consen 7 NAARTRREKENYEFYELAKLLPLASAITSQL-DKASIIRLTTSYLKMR 53 (598)
T ss_pred hHHHHHHHhhcchHHHHHhhccchhhhhhcc-chhhhhhHHHHHHHHH
Confidence 357999999999999999999954 454 9999999999999853
No 19
>KOG3898 consensus Transcription factor NeuroD and related HTH proteins [Transcription]
Probab=45.68 E-value=18 Score=34.89 Aligned_cols=49 Identities=24% Similarity=0.396 Sum_probs=39.5
Q ss_pred CcchhhHHHHHHHHHHHHHHHhccCCC---CCcCCChhhHHHHHHHHHHHHHH
Q 019338 268 NSHSLAERVRREKISERMRLLQELVPG---CNKITGKAVMLDEIINYVQSLQQ 317 (342)
Q Consensus 268 ~~HslaERrRRekIner~~~Lq~LVP~---~~K~~dKAsIL~eaIdYIk~LQ~ 317 (342)
..=+.-||.|=-.+|+-|..||.+||. ..|+ .|+-.|.-+-+||-.|+.
T Consensus 74 ~kaNaRER~RMH~LNdAld~LReviP~~~~~~kl-skIetl~~a~~yi~als~ 125 (254)
T KOG3898|consen 74 LKANARERTRMHDLNDALDALREVIPHGLHPPKL-SKIETLRLAANYIAALSE 125 (254)
T ss_pred ccccchhhccccchhHHHHHhHhhccCcCCCCCC-CcchhHHhhhcchhhhcc
Confidence 444566888888999999999999993 3454 788889888888888774
No 20
>PF13334 DUF4094: Domain of unknown function (DUF4094)
Probab=41.24 E-value=52 Score=27.50 Aligned_cols=26 Identities=12% Similarity=0.204 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 019338 305 LDEIINYVQSLQQQVEVCYFMAVKWRHFN 333 (342)
Q Consensus 305 L~eaIdYIk~LQ~qVq~l~~Ls~kl~~~n 333 (342)
+.++-+-|+.|.+.|- .|.|+|++..
T Consensus 68 V~kTh~aIq~LdKtIS---~LEMELAaAR 93 (95)
T PF13334_consen 68 VSKTHEAIQSLDKTIS---SLEMELAAAR 93 (95)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHh
Confidence 4677777889999998 9999999865
No 21
>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]
Probab=37.43 E-value=42 Score=33.88 Aligned_cols=43 Identities=23% Similarity=0.410 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhccCCCC--CcCCChhhHHHHHHHHHHHHHHHHHHHHH----HHHHHHhc
Q 019338 275 RVRREKISERMRLLQELVPGC--NKITGKAVMLDEIINYVQSLQQQVEVCYF----MAVKWRHF 332 (342)
Q Consensus 275 RrRRekIner~~~Lq~LVP~~--~K~~dKAsIL~eaIdYIk~LQ~qVq~l~~----Ls~kl~~~ 332 (342)
|+|--|+-+.-.+-|+ | .|+ +|||-|+.+|.||+- |-++|.+|
T Consensus 290 rKRevRLmKNREAARE----CRRKKK-----------EYVKCLENRVAVLENQNKaLIEELKtL 338 (348)
T KOG3584|consen 290 RKREVRLMKNREAARE----CRRKKK-----------EYVKCLENRVAVLENQNKALIEELKTL 338 (348)
T ss_pred hHHHHHHHhhHHHHHH----HHHhHh-----------HHHHHHHhHHHHHhcccHHHHHHHHHH
No 22
>KOG3582 consensus Mlx interactors and related transcription factors [Transcription]
Probab=30.40 E-value=15 Score=40.79 Aligned_cols=54 Identities=24% Similarity=0.332 Sum_probs=44.2
Q ss_pred CCcchhhHHHHHHHHHHHHHHHhccCCCCCcC----CChhhHHHHHHHHHHHHHHHHH
Q 019338 267 TNSHSLAERVRREKISERMRLLQELVPGCNKI----TGKAVMLDEIINYVQSLQQQVE 320 (342)
Q Consensus 267 ~~~HslaERrRRekIner~~~Lq~LVP~~~K~----~dKAsIL~eaIdYIk~LQ~qVq 320 (342)
...|+-+|.+||..|.-.+..|-.++-....+ +-+++-|+.+++||.-++.+..
T Consensus 652 ~it~~Sa~qkrr~n~kl~~~~~Ns~~Sn~~~l~s~k~t~~~~~q~~vhYi~~t~~e~~ 709 (856)
T KOG3582|consen 652 PITHISAEQKRRFNIKLQFDVLNSLSSNSSSLSSIKTTNSNSLQKTVHYINVTQQERV 709 (856)
T ss_pred cccCccHHHHHHhhHHhhhHhhhhhccCcccccchhhhccccccCceeeeeccchhcc
Confidence 47899999999999999999999999865332 3566679999999988877544
No 23
>KOG3582 consensus Mlx interactors and related transcription factors [Transcription]
Probab=28.02 E-value=21 Score=39.59 Aligned_cols=61 Identities=16% Similarity=0.187 Sum_probs=48.6
Q ss_pred CCcCCcchhhHHHHHHHHHHHHHHHhccCCCC----CcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019338 264 GQATNSHSLAERVRREKISERMRLLQELVPGC----NKITGKAVMLDEIINYVQSLQQQVEVCYFMAVKWR 330 (342)
Q Consensus 264 ~~a~~~HslaERrRRekIner~~~Lq~LVP~~----~K~~dKAsIL~eaIdYIk~LQ~qVq~l~~Ls~kl~ 330 (342)
+.....|.-++|+||..+-+++..|..|.|.. .+++.+++||. +-|+.+|+.-+ .+.++..
T Consensus 785 ~~v~a~sih~lrr~~~~~~dq~~sL~alrp~v~~~~~ql~S~tS~L~---dp~~~~eq~sk---a~~e~~~ 849 (856)
T KOG3582|consen 785 GMVSAGSIHALRRTRLNWLDQFCSLPALRPQVLLNLRQLLSSTSILT---DPIKQPEQASK---AVTEKIE 849 (856)
T ss_pred ceeecchHHHHHHHHHHHhhccccHHHHHHHHHhhHHHhhhhhhccc---CcccchHHHHH---HHHhhhh
Confidence 33446788899999999999999999999954 45568999999 88899998888 4444433
No 24
>PF05781 MRVI1: MRVI1 protein; InterPro: IPR008677 This family consists of mammalian MRVI1 proteins which are related to the lymphoid-restricted membrane protein (JAW1) and the IP3 receptor associated cGMP kinase substrates A and B (IRAGA and IRAGB). The function of MRVI1 is unknown although mutations in the Mrvi1 gene induces myeloid leukaemia by altering the expression of a gene important for myeloid cell growth and/or differentiation so it has been speculated that Mrvi1 is a tumour suppressor gene []. IRAG is very similar in sequence to MRVI1 and is an essential NO/cGKI-dependent regulator of IP3-induced calcium release. Activation of cGKI decreases IP3-stimulated elevations in intracellular calcium, induces smooth muscle relaxation and contributes to the antiproliferative and pro-apoptotic effects of NO/cGMP []. Jaw1 is a member of a class of proteins with COOH-terminal hydrophobic membrane anchors and is structurally similar to proteins involved in vesicle targeting and fusion. This suggests that the function and/or the structure of the ER in lymphocytes may be modified by lymphoid-restricted resident ER proteins [].
Probab=27.82 E-value=1.2e+02 Score=32.67 Aligned_cols=56 Identities=29% Similarity=0.409 Sum_probs=41.8
Q ss_pred CcchhhHHHHHHHHHHHHHHHhccCCCCCcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019338 268 NSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEVCYFMAVKWR 330 (342)
Q Consensus 268 ~~HslaERrRRekIner~~~Lq~LVP~~~K~~dKAsIL~eaIdYIk~LQ~qVq~l~~Ls~kl~ 330 (342)
....++|.-=+..|......|+.|.|-|.. | .++.+-|+.|+.++++|..++.+++
T Consensus 220 R~RdlaEeNl~kEi~~~~~~l~~l~~lc~~--d-----~e~~e~~~kl~~~l~~l~~~~~rvs 275 (538)
T PF05781_consen 220 RSRDLAEENLKKEIENCLKLLESLAPLCWE--D-----NESREIIQKLQKSLDVLHQCATRVS 275 (538)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccchh--h-----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666788888899999999875 1 3667888888888887777776665
No 25
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=24.08 E-value=62 Score=29.93 Aligned_cols=44 Identities=30% Similarity=0.358 Sum_probs=28.8
Q ss_pred hHHHHHHHHHHHHHHHhccCCCCC--cCCChhhHHHHHHHHHHHHHH
Q 019338 273 AERVRREKISERMRLLQELVPGCN--KITGKAVMLDEIINYVQSLQQ 317 (342)
Q Consensus 273 aERrRRekIner~~~Lq~LVP~~~--K~~dKAsIL~eaIdYIk~LQ~ 317 (342)
.||.|..++++.+.-|+.|+|+.. ++ .+.--|.-+-+||++|.+
T Consensus 29 ~e~~R~~~ls~~s~l~g~l~pgspa~gk-~~~ktlr~~~~~~~~~dE 74 (173)
T KOG4447|consen 29 KERGRKRRLSDASTLLGKLEPGSPADGK-RGKKTLRIGTDSIQSLDE 74 (173)
T ss_pred HHHhHHhhhhhhhhhccccCCCCCCccc-ccccccccCCCchhhHHH
Confidence 478888899999999999999762 22 111114445555555543
No 26
>KOG4395 consensus Transcription factor Atonal, contains HTH domain [Transcription]
Probab=23.43 E-value=1.2e+02 Score=30.21 Aligned_cols=52 Identities=21% Similarity=0.221 Sum_probs=39.9
Q ss_pred CcchhhHHHHHHHHHHHHHHHhccCCCCC--cCCChhhHHHHHHHHHHHHHHHH
Q 019338 268 NSHSLAERVRREKISERMRLLQELVPGCN--KITGKAVMLDEIINYVQSLQQQV 319 (342)
Q Consensus 268 ~~HslaERrRRekIner~~~Lq~LVP~~~--K~~dKAsIL~eaIdYIk~LQ~qV 319 (342)
..-+..||+|=..+|.-|..|+..||..+ ++..|---|+-+-.||-.|-...
T Consensus 176 ~aanarErrrm~gLN~AfD~Lr~v~p~~~~d~~LSkyetLqmaq~yi~~l~~~l 229 (285)
T KOG4395|consen 176 LAANARERRRMNGLNSAFDRLRLVVPDGDSDKKLSKYETLQMAQGYILALGCLL 229 (285)
T ss_pred cccchHHHHHhhhHHHHHHHHHHhcCCCCccchhhhhhHHHHHHHHHhhhHHhh
Confidence 34566799999999999999999999553 22367777888888887776554
No 27
>PF10465 Inhibitor_I24: PinA peptidase inhibitor ; InterPro: IPR019506 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. PinA inhibits the endopeptidase La. It binds to the La homotetramer but does not interfere with the ATP binding site or the active site of La.
Probab=20.57 E-value=77 Score=28.36 Aligned_cols=19 Identities=16% Similarity=0.436 Sum_probs=16.9
Q ss_pred hhhHHHHHHHHHHHHHHHH
Q 019338 301 KAVMLDEIINYVQSLQQQV 319 (342)
Q Consensus 301 KAsIL~eaIdYIk~LQ~qV 319 (342)
-..+.+.|.+||.+|+.|+
T Consensus 121 EgnLMQAAAeYIewLE~ql 139 (140)
T PF10465_consen 121 EGNLMQAAAEYIEWLETQL 139 (140)
T ss_pred hhhHHHHHHHHHHHHHhhc
Confidence 6678899999999999986
Done!