Query 019338
Match_columns 342
No_of_seqs 203 out of 823
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 14:33:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019338.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019338hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1am9_A Srebp-1A, protein (ster 99.6 1.2E-16 4E-21 126.5 4.1 67 266-335 6-72 (82)
2 4ati_A MITF, microphthalmia-as 99.6 3.2E-16 1.1E-20 131.9 6.5 70 256-325 17-89 (118)
3 1a0a_A BHLH, protein (phosphat 99.5 2E-15 7E-20 114.6 2.0 54 267-320 3-62 (63)
4 4h10_B Circadian locomoter out 99.5 7.5E-15 2.6E-19 114.4 4.9 55 266-320 8-62 (71)
5 1an4_A Protein (upstream stimu 99.5 4.8E-15 1.6E-19 111.8 2.8 56 265-320 4-64 (65)
6 4h10_A ARYL hydrocarbon recept 99.5 5.5E-15 1.9E-19 115.4 1.1 53 264-317 7-63 (73)
7 1nkp_B MAX protein, MYC proto- 99.4 9.5E-14 3.3E-18 109.3 5.1 56 268-324 4-61 (83)
8 1hlo_A Protein (transcription 99.4 1.7E-13 5.8E-18 107.4 5.8 62 267-332 13-76 (80)
9 1nkp_A C-MYC, MYC proto-oncoge 99.4 5.4E-13 1.8E-17 107.0 6.5 56 268-324 8-66 (88)
10 3u5v_A Protein MAX, transcript 99.3 2.4E-12 8.2E-17 101.1 4.2 54 267-320 6-62 (76)
11 1nlw_A MAD protein, MAX dimeri 99.2 1.1E-11 3.7E-16 98.0 5.9 55 268-323 3-60 (80)
12 4f3l_A Mclock, circadian locom 98.9 1.1E-09 3.9E-14 103.9 6.1 53 265-318 11-64 (361)
13 1mdy_A Protein (MYOD BHLH doma 98.9 2.1E-09 7.1E-14 82.9 5.1 53 268-320 14-67 (68)
14 2ql2_B Neurod1, neurogenic dif 98.8 6.1E-09 2.1E-13 78.3 5.7 53 268-320 4-58 (60)
15 4f3l_B BMAL1B; BHLH, PAS, circ 98.8 1.8E-09 6.2E-14 104.0 3.5 53 265-318 12-68 (387)
16 4ath_A MITF, microphthalmia-as 98.7 4.6E-08 1.6E-12 78.4 7.1 51 277-327 3-56 (83)
17 2lfh_A DNA-binding protein inh 98.3 2.5E-07 8.4E-12 71.7 2.8 44 274-317 22-67 (68)
18 4aya_A DNA-binding protein inh 97.6 0.0001 3.5E-09 60.6 6.4 47 274-320 33-81 (97)
19 3muj_A Transcription factor CO 43.5 27 0.00091 30.2 4.6 35 280-315 95-133 (138)
20 2wt7_A Proto-oncogene protein 41.5 12 0.00043 27.5 1.9 11 310-320 23-33 (63)
21 2oqq_A Transcription factor HY 28.3 27 0.00091 24.6 1.7 27 310-339 3-29 (42)
22 1gd2_E Transcription factor PA 28.0 36 0.0012 26.0 2.6 13 310-322 29-41 (70)
23 3he4_B Synzip5; heterodimeric 24.1 81 0.0028 22.0 3.6 26 305-330 5-30 (46)
24 1zme_C Proline utilization tra 22.6 52 0.0018 23.3 2.5 15 310-324 44-58 (70)
25 2wuj_A Septum site-determining 21.6 1.1E+02 0.0036 22.1 4.0 30 303-335 27-56 (57)
No 1
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=99.63 E-value=1.2e-16 Score=126.48 Aligned_cols=67 Identities=21% Similarity=0.327 Sum_probs=58.4
Q ss_pred cCCcchhhHHHHHHHHHHHHHHHhccCCCCCcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 019338 266 ATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEVCYFMAVKWRHFNLQ 335 (342)
Q Consensus 266 a~~~HslaERrRRekIner~~~Lq~LVP~~~K~~dKAsIL~eaIdYIk~LQ~qVq~l~~Ls~kl~~~n~~ 335 (342)
.+..|+++||+||++||++|..|++|||++..+++|++||++||+||++||.+++ .|..+.+.+...
T Consensus 6 rr~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~---~L~~e~~~L~~~ 72 (82)
T 1am9_A 6 KRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQ---KLKQENLSLRTA 72 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 4579999999999999999999999999985556999999999999999999999 666666655443
No 2
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=99.62 E-value=3.2e-16 Score=131.88 Aligned_cols=70 Identities=29% Similarity=0.425 Sum_probs=50.3
Q ss_pred cccccccCCCcCCcchhhHHHHHHHHHHHHHHHhccCCCCCc---CCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 019338 256 YIHMRAKRGQATNSHSLAERVRREKISERMRLLQELVPGCNK---ITGKAVMLDEIINYVQSLQQQVEVCYFM 325 (342)
Q Consensus 256 ~i~~rakr~~a~~~HslaERrRRekIner~~~Lq~LVP~~~K---~~dKAsIL~eaIdYIk~LQ~qVq~l~~L 325 (342)
..+..+++.+++..|+++||+||++||++|..|++|||+|.+ +++|++||+.||+||++||.+++.|..+
T Consensus 17 ~~~~~~k~~~kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~ 89 (118)
T 4ati_A 17 EARALAKERQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDL 89 (118)
T ss_dssp --------------CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445567777888999999999999999999999999999853 2589999999999999999999966655
No 3
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=99.52 E-value=2e-15 Score=114.56 Aligned_cols=54 Identities=30% Similarity=0.447 Sum_probs=48.4
Q ss_pred CCcchhhHHHHHHHHHHHHHHHhccCCCCCc------CCChhhHHHHHHHHHHHHHHHHH
Q 019338 267 TNSHSLAERVRREKISERMRLLQELVPGCNK------ITGKAVMLDEIINYVQSLQQQVE 320 (342)
Q Consensus 267 ~~~HslaERrRRekIner~~~Lq~LVP~~~K------~~dKAsIL~eaIdYIk~LQ~qVq 320 (342)
+.+|+++||+||++||..|..|+.|||.+.+ +.+||.||+.||+||+.||++|+
T Consensus 3 r~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~~ 62 (63)
T 1a0a_A 3 RESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNGS 62 (63)
T ss_dssp TTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCSC
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHhh
Confidence 4799999999999999999999999997633 23699999999999999998874
No 4
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.52 E-value=7.5e-15 Score=114.40 Aligned_cols=55 Identities=18% Similarity=0.381 Sum_probs=50.5
Q ss_pred cCCcchhhHHHHHHHHHHHHHHHhccCCCCCcCCChhhHHHHHHHHHHHHHHHHH
Q 019338 266 ATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVE 320 (342)
Q Consensus 266 a~~~HslaERrRRekIner~~~Lq~LVP~~~K~~dKAsIL~eaIdYIk~LQ~qVq 320 (342)
.+.+|+++||+||++||++|.+|+.|||++..++||++||+.||+||+.||.++.
T Consensus 8 kR~~Hn~iErrRRd~IN~~i~eL~~LvP~~~~K~dK~sIL~~aI~yik~Lq~~~~ 62 (71)
T 4h10_B 8 KRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKEITA 62 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhhHHHhhHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhhh
Confidence 3479999999999999999999999999865445999999999999999999987
No 5
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=99.50 E-value=4.8e-15 Score=111.83 Aligned_cols=56 Identities=27% Similarity=0.433 Sum_probs=50.1
Q ss_pred CcCCcchhhHHHHHHHHHHHHHHHhccCCCCCc-----CCChhhHHHHHHHHHHHHHHHHH
Q 019338 265 QATNSHSLAERVRREKISERMRLLQELVPGCNK-----ITGKAVMLDEIINYVQSLQQQVE 320 (342)
Q Consensus 265 ~a~~~HslaERrRRekIner~~~Lq~LVP~~~K-----~~dKAsIL~eaIdYIk~LQ~qVq 320 (342)
..+..|+++||+||++||+.|..|+.|||.|.. +++|++||+.||+||++||.+.+
T Consensus 4 ~rr~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~~ 64 (65)
T 1an4_A 4 KRRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSNH 64 (65)
T ss_dssp CCCCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTTC
T ss_pred HHHHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 346899999999999999999999999999862 35999999999999999998753
No 6
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.47 E-value=5.5e-15 Score=115.44 Aligned_cols=53 Identities=30% Similarity=0.478 Sum_probs=48.1
Q ss_pred CCcCCcchhhHHHHHHHHHHHHHHHhccCCCC----CcCCChhhHHHHHHHHHHHHHH
Q 019338 264 GQATNSHSLAERVRREKISERMRLLQELVPGC----NKITGKAVMLDEIINYVQSLQQ 317 (342)
Q Consensus 264 ~~a~~~HslaERrRRekIner~~~Lq~LVP~~----~K~~dKAsIL~eaIdYIk~LQ~ 317 (342)
.+++..|+++||+||++||+.|.+|+.|||.| .| +|||+||+.||+||+.||.
T Consensus 7 ~~rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~K-ldKasIL~~tV~ylk~l~~ 63 (73)
T 4h10_A 7 KNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRK-LDKLTVLRMAVQHMKTLRG 63 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSC-CCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHHHHcccccccccc-ccHHHHHHHHHHHHHHHhc
Confidence 34568999999999999999999999999987 46 4999999999999999984
No 7
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=99.42 E-value=9.5e-14 Score=109.25 Aligned_cols=56 Identities=27% Similarity=0.466 Sum_probs=50.7
Q ss_pred CcchhhHHHHHHHHHHHHHHHhccCCCC--CcCCChhhHHHHHHHHHHHHHHHHHHHHH
Q 019338 268 NSHSLAERVRREKISERMRLLQELVPGC--NKITGKAVMLDEIINYVQSLQQQVEVCYF 324 (342)
Q Consensus 268 ~~HslaERrRRekIner~~~Lq~LVP~~--~K~~dKAsIL~eaIdYIk~LQ~qVq~l~~ 324 (342)
..|+..||+||++||+.|..|+++||.+ .| .+|++||..||+||+.||.+++.|..
T Consensus 4 ~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k-~sK~~iL~~Ai~YI~~L~~~~~~l~~ 61 (83)
T 1nkp_B 4 AHHNALERKRRDHIKDSFHSLRDSVPSLQGEK-ASRAQILDKATEYIQYMRRKNHTHQQ 61 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSC-CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhhhHHHHHHHHHHHHHHHHHHHCCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999975 56 59999999999999999999984443
No 8
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.41 E-value=1.7e-13 Score=107.40 Aligned_cols=62 Identities=24% Similarity=0.427 Sum_probs=54.8
Q ss_pred CCcchhhHHHHHHHHHHHHHHHhccCCCC--CcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019338 267 TNSHSLAERVRREKISERMRLLQELVPGC--NKITGKAVMLDEIINYVQSLQQQVEVCYFMAVKWRHF 332 (342)
Q Consensus 267 ~~~HslaERrRRekIner~~~Lq~LVP~~--~K~~dKAsIL~eaIdYIk~LQ~qVq~l~~Ls~kl~~~ 332 (342)
+..|+..||+||..||+.|..|+.|||.+ .| .+|+.||..||+||+.||.+++ .|..+++.+
T Consensus 13 R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k-~sK~~iL~~Ai~YI~~L~~~~~---~L~~e~~~L 76 (80)
T 1hlo_A 13 RAHHNALERKRRDHIKDSFHSLRDSVPSLQGEK-ASRAQILDKATEYIQYMRRKNH---THQQDIDDL 76 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSGGGTTSC-CCHHHHHHHHHHHHHHHHHHHH---HHHHHHHTH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHCcCCCCCC-ccHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 47999999999999999999999999987 46 5999999999999999999999 665555544
No 9
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.37 E-value=5.4e-13 Score=107.03 Aligned_cols=56 Identities=25% Similarity=0.417 Sum_probs=50.6
Q ss_pred CcchhhHHHHHHHHHHHHHHHhccCCCC---CcCCChhhHHHHHHHHHHHHHHHHHHHHH
Q 019338 268 NSHSLAERVRREKISERMRLLQELVPGC---NKITGKAVMLDEIINYVQSLQQQVEVCYF 324 (342)
Q Consensus 268 ~~HslaERrRRekIner~~~Lq~LVP~~---~K~~dKAsIL~eaIdYIk~LQ~qVq~l~~ 324 (342)
..|++.||+||+.||++|..|+++||.+ .| .+|++||..||+||++|+.+.+.|..
T Consensus 8 ~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K-~sK~~iL~~A~~YI~~L~~~~~~l~~ 66 (88)
T 1nkp_A 8 RTHNVLERQRRNELKRSFFALRDQIPELENNEK-APKVVILKKATAYILSVQAEEQKLIS 66 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTT-CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999976 35 59999999999999999999884443
No 10
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=99.26 E-value=2.4e-12 Score=101.13 Aligned_cols=54 Identities=30% Similarity=0.423 Sum_probs=46.3
Q ss_pred CCcchhhHHHHHHHHHHHHHHHhccCCCC---CcCCChhhHHHHHHHHHHHHHHHHH
Q 019338 267 TNSHSLAERVRREKISERMRLLQELVPGC---NKITGKAVMLDEIINYVQSLQQQVE 320 (342)
Q Consensus 267 ~~~HslaERrRRekIner~~~Lq~LVP~~---~K~~dKAsIL~eaIdYIk~LQ~qVq 320 (342)
+..|+..||+||+.||+.|..|+.+||.+ .|...|+.||..||+||++||++++
T Consensus 6 R~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~ 62 (76)
T 3u5v_A 6 RAHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVR 62 (76)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999953 3433688999999999999999998
No 11
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=99.22 E-value=1.1e-11 Score=98.04 Aligned_cols=55 Identities=18% Similarity=0.248 Sum_probs=49.4
Q ss_pred CcchhhHHHHHHHHHHHHHHHhccCCCC---CcCCChhhHHHHHHHHHHHHHHHHHHHH
Q 019338 268 NSHSLAERVRREKISERMRLLQELVPGC---NKITGKAVMLDEIINYVQSLQQQVEVCY 323 (342)
Q Consensus 268 ~~HslaERrRRekIner~~~Lq~LVP~~---~K~~dKAsIL~eaIdYIk~LQ~qVq~l~ 323 (342)
..|+..||+||..|++.|..|+++||.+ .| ..|+.||..||+||+.||.+.+.|.
T Consensus 3 ~~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k-~sk~~iL~kA~~yI~~L~~~~~~l~ 60 (80)
T 1nlw_A 3 STHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSR-HTTLSLLTKAKLHIKKLEDSDRKAV 60 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCC-CTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5799999999999999999999999965 45 4899999999999999999998433
No 12
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.90 E-value=1.1e-09 Score=103.94 Aligned_cols=53 Identities=21% Similarity=0.440 Sum_probs=41.3
Q ss_pred CcCCcchhhHHHHHHHHHHHHHHHhccCCC-CCcCCChhhHHHHHHHHHHHHHHH
Q 019338 265 QATNSHSLAERVRREKISERMRLLQELVPG-CNKITGKAVMLDEIINYVQSLQQQ 318 (342)
Q Consensus 265 ~a~~~HslaERrRRekIner~~~Lq~LVP~-~~K~~dKAsIL~eaIdYIk~LQ~q 318 (342)
.++.+|+++||+||++||+.|.+|+.|||. ..| +||++||..||+||+.|+..
T Consensus 11 ~~~~~~~~~e~~rr~~~n~~~~~l~~~~p~~~~~-~dk~~il~~~~~~~~~~~~~ 64 (361)
T 4f3l_A 11 AKRVSRNKSEKKRRDQFNVLIKELGSMLPGNARK-MDKSTVLQKSIDFLRKHKET 64 (361)
T ss_dssp --------CHHHHHHHHHHHHHHHHHTCCSSSCC-CCHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHhCCCCCCC-cCHHHHHHHHHHHHHHHHhh
Confidence 345799999999999999999999999994 456 59999999999999999864
No 13
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=98.86 E-value=2.1e-09 Score=82.86 Aligned_cols=53 Identities=25% Similarity=0.376 Sum_probs=47.0
Q ss_pred CcchhhHHHHHHHHHHHHHHHhccCCCC-CcCCChhhHHHHHHHHHHHHHHHHH
Q 019338 268 NSHSLAERVRREKISERMRLLQELVPGC-NKITGKAVMLDEIINYVQSLQQQVE 320 (342)
Q Consensus 268 ~~HslaERrRRekIner~~~Lq~LVP~~-~K~~dKAsIL~eaIdYIk~LQ~qVq 320 (342)
..|+..||+|+..||+.|..|+.+||.. +++..|+.+|..||+||.+||..++
T Consensus 14 ~~aN~rER~R~~~iN~af~~LR~~iP~~~~~KlSKi~tLr~Ai~YI~~L~~~L~ 67 (68)
T 1mdy_A 14 KAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALLR 67 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred hHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 5799999999999999999999999964 3335999999999999999998653
No 14
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=98.80 E-value=6.1e-09 Score=78.33 Aligned_cols=53 Identities=21% Similarity=0.256 Sum_probs=47.0
Q ss_pred CcchhhHHHHHHHHHHHHHHHhccCCCC--CcCCChhhHHHHHHHHHHHHHHHHH
Q 019338 268 NSHSLAERVRREKISERMRLLQELVPGC--NKITGKAVMLDEIINYVQSLQQQVE 320 (342)
Q Consensus 268 ~~HslaERrRRekIner~~~Lq~LVP~~--~K~~dKAsIL~eaIdYIk~LQ~qVq 320 (342)
..|+..||+|+..||+.|..|+.+||.. +++..|..+|..||+||..||..++
T Consensus 4 ~~~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~ 58 (60)
T 2ql2_B 4 MKANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR 58 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence 4688999999999999999999999964 3345999999999999999998764
No 15
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.79 E-value=1.8e-09 Score=103.98 Aligned_cols=53 Identities=28% Similarity=0.423 Sum_probs=47.6
Q ss_pred CcCCcchhhHHHHHHHHHHHHHHHhccCC----CCCcCCChhhHHHHHHHHHHHHHHH
Q 019338 265 QATNSHSLAERVRREKISERMRLLQELVP----GCNKITGKAVMLDEIINYVQSLQQQ 318 (342)
Q Consensus 265 ~a~~~HslaERrRRekIner~~~Lq~LVP----~~~K~~dKAsIL~eaIdYIk~LQ~q 318 (342)
+++.+|+.+||+||++||+.|.+|+.||| ...|+ ||++||..||+||+.|+..
T Consensus 12 ~~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~-dk~~il~~~~~~l~~~~~~ 68 (387)
T 4f3l_B 12 NAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKL-DKLTVLRMAVQHMKTLRGA 68 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSCC-CHHHHHHHHHHHHHHHHCC
T ss_pred hhcccccchhhcchHHHHHHHHHHHHhcCCCCcccccc-CHHHHHHHHHHHHHHhhcc
Confidence 34589999999999999999999999999 45675 9999999999999999853
No 16
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=98.66 E-value=4.6e-08 Score=78.38 Aligned_cols=51 Identities=24% Similarity=0.389 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHhccCCCCCc---CCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 019338 277 RREKISERMRLLQELVPGCNK---ITGKAVMLDEIINYVQSLQQQVEVCYFMAV 327 (342)
Q Consensus 277 RRekIner~~~Lq~LVP~~~K---~~dKAsIL~eaIdYIk~LQ~qVq~l~~Ls~ 327 (342)
-|..||++|++|..|||.+.. ..+|++||..+|+||++||++++-|..+..
T Consensus 3 ~R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r~~e~e~ 56 (83)
T 4ath_A 3 MRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLEN 56 (83)
T ss_dssp CHHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred chhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 489999999999999998643 249999999999999999998885555544
No 17
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.31 E-value=2.5e-07 Score=71.70 Aligned_cols=44 Identities=25% Similarity=0.412 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHhccCCCC--CcCCChhhHHHHHHHHHHHHHH
Q 019338 274 ERVRREKISERMRLLQELVPGC--NKITGKAVMLDEIINYVQSLQQ 317 (342)
Q Consensus 274 ERrRRekIner~~~Lq~LVP~~--~K~~dKAsIL~eaIdYIk~LQ~ 317 (342)
||+|+..||+.|..||.+||.. +++..|..+|..||+||..||.
T Consensus 22 ER~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 22 PLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV 67 (68)
T ss_dssp CSCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence 8999999999999999999965 3335999999999999999984
No 18
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=97.60 E-value=0.0001 Score=60.55 Aligned_cols=47 Identities=28% Similarity=0.407 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHhccCCCC--CcCCChhhHHHHHHHHHHHHHHHHH
Q 019338 274 ERVRREKISERMRLLQELVPGC--NKITGKAVMLDEIINYVQSLQQQVE 320 (342)
Q Consensus 274 ERrRRekIner~~~Lq~LVP~~--~K~~dKAsIL~eaIdYIk~LQ~qVq 320 (342)
||.|=..||+-|..||.+||.. +++..|..+|.-||+||..||..++
T Consensus 33 ~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~ 81 (97)
T 4aya_A 33 PMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALD 81 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHh
Confidence 4677788999999999999964 3445899999999999999999887
No 19
>3muj_A Transcription factor COE3; immunoglobulin like fold, helix-loop-helix, structural genom consortium, SGC, DNA binding protein; 1.92A {Homo sapiens} PDB: 3mqi_A
Probab=43.50 E-value=27 Score=30.19 Aligned_cols=35 Identities=26% Similarity=0.475 Sum_probs=29.4
Q ss_pred HHHHHHHHHhccCCCC----CcCCChhhHHHHHHHHHHHH
Q 019338 280 KISERMRLLQELVPGC----NKITGKAVMLDEIINYVQSL 315 (342)
Q Consensus 280 kIner~~~Lq~LVP~~----~K~~dKAsIL~eaIdYIk~L 315 (342)
.|...|..|+++||.- .++ -|-.||+.|.|++..|
T Consensus 95 tId~gfqrl~k~~pr~pgdpe~l-pk~~~lkraa~l~e~~ 133 (138)
T 3muj_A 95 TIDYGFQRLQKVIPRHPGDPERL-PKEVLLKRAADLVEAL 133 (138)
T ss_dssp CHHHHHHHHHHHSCCCTTCCSSC-CHHHHHHHHHHHHHHH
T ss_pred ccccchhhhccccCCCCCChhhh-hHHHHHHHHHHHHHHH
Confidence 5889999999999943 443 7999999999998876
No 20
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=41.52 E-value=12 Score=27.47 Aligned_cols=11 Identities=18% Similarity=0.432 Sum_probs=6.0
Q ss_pred HHHHHHHHHHH
Q 019338 310 NYVQSLQQQVE 320 (342)
Q Consensus 310 dYIk~LQ~qVq 320 (342)
+|+..|+.+|+
T Consensus 23 ~~~~~Le~~v~ 33 (63)
T 2wt7_A 23 ELTDTLQAETD 33 (63)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 45555555555
No 21
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=28.34 E-value=27 Score=24.65 Aligned_cols=27 Identities=19% Similarity=0.331 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccccc
Q 019338 310 NYVQSLQQQVEVCYFMAVKWRHFNLQFTCL 339 (342)
Q Consensus 310 dYIk~LQ~qVq~l~~Ls~kl~~~n~~~~~l 339 (342)
-|+..|+.+++ .|..+.+.++..+.+|
T Consensus 3 aYl~eLE~r~k---~le~~naeLEervstL 29 (42)
T 2oqq_A 3 AYLSELENRVK---DLENKNSELEERLSTL 29 (42)
T ss_dssp HHHHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 48888998888 6666666665554443
No 22
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=28.03 E-value=36 Score=25.96 Aligned_cols=13 Identities=23% Similarity=0.330 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHH
Q 019338 310 NYVQSLQQQVEVC 322 (342)
Q Consensus 310 dYIk~LQ~qVq~l 322 (342)
.||+.|+.+|..|
T Consensus 29 ~~i~~LE~~v~~l 41 (70)
T 1gd2_E 29 DHLKALETQVVTL 41 (70)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444433
No 23
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=24.14 E-value=81 Score=22.03 Aligned_cols=26 Identities=19% Similarity=0.327 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019338 305 LDEIINYVQSLQQQVEVCYFMAVKWR 330 (342)
Q Consensus 305 L~eaIdYIk~LQ~qVq~l~~Ls~kl~ 330 (342)
+.+--+||+.|+.+-..|..|..-|.
T Consensus 5 vkelknyiqeleernaelknlkehlk 30 (46)
T 3he4_B 5 VKELKNYIQELEERNAELKNLKEHLK 30 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHhHHHHHH
Confidence 56777999999998886666666554
No 24
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=22.62 E-value=52 Score=23.34 Aligned_cols=15 Identities=27% Similarity=0.304 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHH
Q 019338 310 NYVQSLQQQVEVCYF 324 (342)
Q Consensus 310 dYIk~LQ~qVq~l~~ 324 (342)
.||..|+.+++.|+.
T Consensus 44 ~~~~~L~~ri~~Le~ 58 (70)
T 1zme_C 44 KYLQQLQKDLNDKTE 58 (70)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 577888888883333
No 25
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=21.62 E-value=1.1e+02 Score=22.08 Aligned_cols=30 Identities=7% Similarity=0.082 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 019338 303 VMLDEIINYVQSLQQQVEVCYFMAVKWRHFNLQ 335 (342)
Q Consensus 303 sIL~eaIdYIk~LQ~qVq~l~~Ls~kl~~~n~~ 335 (342)
..|++.++-+..|.++++ .|..+++.++..
T Consensus 27 ~FLd~v~~~~~~l~~e~~---~L~~~~~~l~~~ 56 (57)
T 2wuj_A 27 EFLAQVRKDYEIVLRKKT---ELEAKVNELDER 56 (57)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHhc
Confidence 468999999999999999 888888776643
Done!