BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019339
(342 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1FPS|A Chain A, Crystal Structure Of Recombinant Farnesyl Diphosphate
Synthase At 2.6 Angstroms Resolution
Length = 348
Score = 317 bits (811), Expect = 7e-87, Method: Compositional matrix adjust.
Identities = 156/314 (49%), Positives = 213/314 (67%), Gaps = 1/314 (0%)
Query: 30 DSRQWVDRMLDYNVPGGKLNRGLSVVDSYRLLKEGKELTDDEFFLSSALGWCIEWLQAYF 89
D+ + +L YN PGGK NRGL+VV +YR L + + + A+GWCIE QA+F
Sbjct: 35 DAVARLKEVLQYNAPGGKCNRGLTVVAAYRELSGPGQKDAESLRCALAVGWCIELFQAFF 94
Query: 90 LVLDDIMDGSHTRRGQPCWFRVPKVGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDL 149
LV DDIMD S TRRGQ CW++ VG+ A ND LL + + R+LK + R +PYYV LL+L
Sbjct: 95 LVADDIMDQSLTRRGQLCWYKKEGVGLDAINDSFLLESSVYRVLKKYCRQRPYYVHLLEL 154
Query: 150 FNEVEFQTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAG- 208
F + +QT GQM+DLIT + DLS +S ++ IV+YKTA+YSFYLPVA A+ M G
Sbjct: 155 FLQTAYQTELGQMLDLITAPVSKVDLSHFSEERYKAIVKYKTAFYSFYLPVAAAMYMVGI 214
Query: 209 ENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVGTDIEDYKCSWLVVKALELCN 268
++ ++H K IL++MG YFQ+QDD+LDCFG P + GKVGTDI+D KCSWLVV+ L+
Sbjct: 215 DSKEEHENAKAILLEMGEYFQIQDDYLDCFGDPALTGKVGTDIQDNKCSWLVVQCLQRVT 274
Query: 269 EEQKKLVHENYGKVDPACVAKVKELYKTLDLEGAFVEYEKESYEKLTKSIEAHPTKEVQA 328
EQ++L+ +NYG+ +P VAKVKELY+ + + AF +YE+ SY +L + IE H + +
Sbjct: 275 PEQRQLLEDNYGRKEPEKVAKVKELYEAVGMRAAFQQYEESSYRRLQELIEKHSNRLPKE 334
Query: 329 VLKSFLAKIYKRQK 342
+ KIYKRQK
Sbjct: 335 IFLGLAQKIYKRQK 348
>pdb|1UBX|A Chain A, Structure Of Farnesyl Pyrophosphate Synthetase
Length = 367
Score = 312 bits (800), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 155/314 (49%), Positives = 211/314 (67%), Gaps = 1/314 (0%)
Query: 30 DSRQWVDRMLDYNVPGGKLNRGLSVVDSYRLLKEGKELTDDEFFLSSALGWCIEWLQAYF 89
D+ + +L YN PGGK NRGL+VV +YR L + + + A+GWCIE QA
Sbjct: 54 DAVARLKEVLQYNAPGGKCNRGLTVVAAYRELSGPGQKDAESLRCALAVGWCIELFQAAS 113
Query: 90 LVLDDIMDGSHTRRGQPCWFRVPKVGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDL 149
LV DDIMD S TRRGQ CW++ VG+ A ND LL + + R+LK + R +PYYV LL+L
Sbjct: 114 LVADDIMDQSLTRRGQLCWYKKEGVGLDAINDSFLLESSVYRVLKKYCRQRPYYVHLLEL 173
Query: 150 FNEVEFQTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAG- 208
F + +QT GQM+DLIT + DLS +S ++ IV+YKTA+YSFYLPVA A+ M G
Sbjct: 174 FLQTAYQTELGQMLDLITAPVSKVDLSHFSEERYKAIVKYKTAFYSFYLPVAAAMYMVGI 233
Query: 209 ENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVGTDIEDYKCSWLVVKALELCN 268
++ ++H K IL++MG YFQ+QDD+LDCFG P + GKVGTDI+D KCSWLVV+ L+
Sbjct: 234 DSKEEHENAKAILLEMGEYFQIQDDYLDCFGDPALTGKVGTDIQDNKCSWLVVQCLQRVT 293
Query: 269 EEQKKLVHENYGKVDPACVAKVKELYKTLDLEGAFVEYEKESYEKLTKSIEAHPTKEVQA 328
EQ++L+ +NYG+ +P VAKVKELY+ + + AF +YE+ SY +L + IE H + +
Sbjct: 294 PEQRQLLEDNYGRKEPEKVAKVKELYEAVGMRAAFQQYEESSYRRLQELIEKHSNRLPKE 353
Query: 329 VLKSFLAKIYKRQK 342
+ KIYKRQK
Sbjct: 354 IFLGLAQKIYKRQK 367
>pdb|1UBV|A Chain A, Structure Of Farnesyl Pyrophosphate Synthetase
pdb|1UBW|A Chain A, Structure Of Farnesyl Pyrophosphate Synthetase
pdb|1UBY|A Chain A, Structure Of Farnesyl Pyrophosphate Synthetase
Length = 367
Score = 310 bits (795), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 154/314 (49%), Positives = 210/314 (66%), Gaps = 1/314 (0%)
Query: 30 DSRQWVDRMLDYNVPGGKLNRGLSVVDSYRLLKEGKELTDDEFFLSSALGWCIEWLQAYF 89
D+ + +L YN PGGK NRGL+VV +YR L + + + A+GWCIE QA
Sbjct: 54 DAVARLKEVLQYNAPGGKCNRGLTVVAAYRELSGPGQKDAESLRCALAVGWCIELFQAAS 113
Query: 90 LVLDDIMDGSHTRRGQPCWFRVPKVGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDL 149
LV DDIMD S TRRGQ CW++ VG+ A ND LL + + R+LK + R +PYYV LL+L
Sbjct: 114 LVADDIMDQSLTRRGQLCWYKKEGVGLDAINDSFLLESSVYRVLKKYCRQRPYYVHLLEL 173
Query: 150 FNEVEFQTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAG- 208
F + +QT GQM+DLIT + DLS +S ++ IV+YKTA+YSFYLPVA A+ M G
Sbjct: 174 FLQTAYQTELGQMLDLITAPVSKVDLSHFSEERYKAIVKYKTAFYSFYLPVAAAMYMVGI 233
Query: 209 ENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVGTDIEDYKCSWLVVKALELCN 268
++ ++H K IL++MG YFQ+QDD+LDCFG P + G VGTDI+D KCSWLVV+ L+
Sbjct: 234 DSKEEHENAKAILLEMGEYFQIQDDYLDCFGDPALTGAVGTDIQDNKCSWLVVQCLQRVT 293
Query: 269 EEQKKLVHENYGKVDPACVAKVKELYKTLDLEGAFVEYEKESYEKLTKSIEAHPTKEVQA 328
EQ++L+ +NYG+ +P VAKVKELY+ + + AF +YE+ SY +L + IE H + +
Sbjct: 294 PEQRQLLEDNYGRKEPEKVAKVKELYEAVGMRAAFQQYEESSYRRLQELIEKHSNRLPKE 353
Query: 329 VLKSFLAKIYKRQK 342
+ KIYKRQK
Sbjct: 354 IFLGLAQKIYKRQK 367
>pdb|3RYE|A Chain A, Human Fdps Synthase In Complex With A N-Methyl Pyridinum
Bisphosphonate
pdb|3S4J|A Chain A, Human Fdps Synthase In Complex With A Rigid Analog Of
Risedronate
Length = 349
Score = 302 bits (774), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 154/341 (45%), Positives = 222/341 (65%), Gaps = 4/341 (1%)
Query: 3 DLKSRFIEVYGVLKQELLNDPAFEFDHDSRQWVDRMLDYNVPGGKLNRGLSVVDSYRLLK 62
D F ++ VL ++ + P D+ + +L+YN GGK NRGL+VV ++R L
Sbjct: 12 DFVQHFSQIVRVLTEDEMGHPEI---GDAIARLKEVLEYNAIGGKYNRGLTVVVAFRELV 68
Query: 63 EGKELTDDEFFLSSALGWCIEWLQAYFLVLDDIMDGSHTRRGQPCWFRVPKVGMIAANDG 122
E ++ D + +GWC+E LQA+FLV DDIMD S TRRGQ CW++ P VG+ A ND
Sbjct: 69 EPRKQDADSLQRAWTVGWCVELLQAFFLVADDIMDSSLTRRGQICWYQKPGVGLDAINDA 128
Query: 123 VLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEGEKDLSKYSLPL 182
LL I R+LK + R++PYY++L++LF + +QT GQ +DL+T +G DL +++
Sbjct: 129 NLLEACIYRLLKLYCREQPYYLNLIELFLQSSYQTEIGQTLDLLTAPQGNVDLVRFTEKR 188
Query: 183 HRRIVQYKTAYYSFYLPVACALLMAGENLDK-HVEVKDILVQMGIYFQVQDDFLDCFGSP 241
++ IV+YKTA+YSFYLP+A A+ MAG + +K H K IL++MG +FQ+QDD+LD FG P
Sbjct: 189 YKSIVKYKTAFYSFYLPIAAAMYMAGIDGEKEHANAKKILLEMGEFFQIQDDYLDLFGDP 248
Query: 242 EVIGKVGTDIEDYKCSWLVVKALELCNEEQKKLVHENYGKVDPACVAKVKELYKTLDLEG 301
V GK+GTDI+D KCSWLVV+ L+ EQ +++ ENYG+ + VA+VK LY+ LDL
Sbjct: 249 SVTGKIGTDIQDNKCSWLVVQCLQRATPEQYQILKENYGQKEAEKVARVKALYEELDLPA 308
Query: 302 AFVEYEKESYEKLTKSIEAHPTKEVQAVLKSFLAKIYKRQK 342
F++YE++SY + IE + AV KIYKR+K
Sbjct: 309 VFLQYEEDSYSHIMALIEQYAAPLPPAVFLGLARKIYKRRK 349
>pdb|2F7M|F Chain F, Crystal Structure Of Unliganded Human Fpps
pdb|2F89|F Chain F, Crystal Structure Of Human Fpps In Complex With
Pamidronate
pdb|2F8C|F Chain F, Crystal Structure Of Fpps In Complex With Zoledronate
pdb|2F8Z|F Chain F, Crystal Structure Of Human Fpps In Complex With
Zoledronate And Isopentenyl Diphosphate
pdb|2F92|F Chain F, Crystal Structure Of Human Fpps In Complex With
Alendronate
pdb|2F94|F Chain F, Crystal Structure Of Human Fpps In Complex With
Ibandronate
pdb|2F9K|F Chain F, Crystal Structure Of Human Fpps In Complex With
Zoledronate And Zn2+
pdb|3N1V|F Chain F, Human Fpps Complex With Fbs_01
pdb|3N1W|F Chain F, Human Fpps Complex With Fbs_02
pdb|3N3L|F Chain F, Human Fpps Complex With Fbs_03
pdb|3N49|F Chain F, Human Fpps Complex With Nov_292
pdb|3N5H|F Chain F, Human Fpps Complex With Nov_304
pdb|3N5J|F Chain F, Human Fpps Complex With Nov_311
pdb|3N6K|F Chain F, Human Fpps Complex With Nov_823
pdb|3N45|F Chain F, Human Fpps Complex With Fbs_04 And Zoledronic AcidMG2+
pdb|3N46|F Chain F, Human Fpps Complex With Nov_980 And Zoledronic AcidMG2+
Length = 350
Score = 302 bits (774), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 154/341 (45%), Positives = 222/341 (65%), Gaps = 4/341 (1%)
Query: 3 DLKSRFIEVYGVLKQELLNDPAFEFDHDSRQWVDRMLDYNVPGGKLNRGLSVVDSYRLLK 62
D F ++ VL ++ + P D+ + +L+YN GGK NRGL+VV ++R L
Sbjct: 13 DFVQHFSQIVRVLTEDEMGHPEI---GDAIARLKEVLEYNAIGGKYNRGLTVVVAFRELV 69
Query: 63 EGKELTDDEFFLSSALGWCIEWLQAYFLVLDDIMDGSHTRRGQPCWFRVPKVGMIAANDG 122
E ++ D + +GWC+E LQA+FLV DDIMD S TRRGQ CW++ P VG+ A ND
Sbjct: 70 EPRKQDADSLQRAWTVGWCVELLQAFFLVADDIMDSSLTRRGQICWYQKPGVGLDAINDA 129
Query: 123 VLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEGEKDLSKYSLPL 182
LL I R+LK + R++PYY++L++LF + +QT GQ +DL+T +G DL +++
Sbjct: 130 NLLEACIYRLLKLYCREQPYYLNLIELFLQSSYQTEIGQTLDLLTAPQGNVDLVRFTEKR 189
Query: 183 HRRIVQYKTAYYSFYLPVACALLMAGENLDK-HVEVKDILVQMGIYFQVQDDFLDCFGSP 241
++ IV+YKTA+YSFYLP+A A+ MAG + +K H K IL++MG +FQ+QDD+LD FG P
Sbjct: 190 YKSIVKYKTAFYSFYLPIAAAMYMAGIDGEKEHANAKKILLEMGEFFQIQDDYLDLFGDP 249
Query: 242 EVIGKVGTDIEDYKCSWLVVKALELCNEEQKKLVHENYGKVDPACVAKVKELYKTLDLEG 301
V GK+GTDI+D KCSWLVV+ L+ EQ +++ ENYG+ + VA+VK LY+ LDL
Sbjct: 250 SVTGKIGTDIQDNKCSWLVVQCLQRATPEQYQILKENYGQKEAEKVARVKALYEELDLPA 309
Query: 302 AFVEYEKESYEKLTKSIEAHPTKEVQAVLKSFLAKIYKRQK 342
F++YE++SY + IE + AV KIYKR+K
Sbjct: 310 VFLQYEEDSYSHIMALIEQYAAPLPPAVFLGLARKIYKRRK 350
>pdb|1ZW5|A Chain A, X-Ray Structure Of Farnesyl Diphosphate Synthase Protein
Length = 355
Score = 302 bits (774), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 154/341 (45%), Positives = 222/341 (65%), Gaps = 4/341 (1%)
Query: 3 DLKSRFIEVYGVLKQELLNDPAFEFDHDSRQWVDRMLDYNVPGGKLNRGLSVVDSYRLLK 62
D F ++ VL ++ + P D+ + +L+YN GGK NRGL+VV ++R L
Sbjct: 18 DFVQHFSQIVRVLTEDEMGHPEI---GDAIARLKEVLEYNAIGGKYNRGLTVVVAFRELV 74
Query: 63 EGKELTDDEFFLSSALGWCIEWLQAYFLVLDDIMDGSHTRRGQPCWFRVPKVGMIAANDG 122
E ++ D + +GWC+E LQA+FLV DDIMD S TRRGQ CW++ P VG+ A ND
Sbjct: 75 EPRKQDADSLQRAWTVGWCVELLQAFFLVADDIMDSSLTRRGQICWYQKPGVGLDAINDA 134
Query: 123 VLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEGEKDLSKYSLPL 182
LL I R+LK + R++PYY++L++LF + +QT GQ +DL+T +G DL +++
Sbjct: 135 NLLEACIYRLLKLYCREQPYYLNLIELFLQSSYQTEIGQTLDLLTAPQGNVDLVRFTEKR 194
Query: 183 HRRIVQYKTAYYSFYLPVACALLMAGENLDK-HVEVKDILVQMGIYFQVQDDFLDCFGSP 241
++ IV+YKTA+YSFYLP+A A+ MAG + +K H K IL++MG +FQ+QDD+LD FG P
Sbjct: 195 YKSIVKYKTAFYSFYLPIAAAMYMAGIDGEKEHANAKKILLEMGEFFQIQDDYLDLFGDP 254
Query: 242 EVIGKVGTDIEDYKCSWLVVKALELCNEEQKKLVHENYGKVDPACVAKVKELYKTLDLEG 301
V GK+GTDI+D KCSWLVV+ L+ EQ +++ ENYG+ + VA+VK LY+ LDL
Sbjct: 255 SVTGKIGTDIQDNKCSWLVVQCLQRATPEQYQILKENYGQKEAEKVARVKALYEELDLPA 314
Query: 302 AFVEYEKESYEKLTKSIEAHPTKEVQAVLKSFLAKIYKRQK 342
F++YE++SY + IE + AV KIYKR+K
Sbjct: 315 VFLQYEEDSYSHIMALIEQYAAPLPPAVFLGLARKIYKRRK 355
>pdb|4DEM|F Chain F, Crystal Structure Of Human Fpps In Complex With Ys_04_70
pdb|4H5D|F Chain F, Crystal Structure Of Human Fpps In Ternary Complex With
Ys0470 And Inorganic Pyrophosphate
pdb|4H5E|F Chain F, Crystal Structure Of Human Fpps In Ternary Complex With
Ys0470 And Isopentenyl Pyrophosphate
pdb|4H5C|F Chain F, Crystal Structure Of Human Fpps In Ternary Complex With
Ys0470 And Inorganic Phosphate
Length = 375
Score = 302 bits (774), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 154/342 (45%), Positives = 222/342 (64%), Gaps = 4/342 (1%)
Query: 2 SDLKSRFIEVYGVLKQELLNDPAFEFDHDSRQWVDRMLDYNVPGGKLNRGLSVVDSYRLL 61
D F ++ VL ++ + P D+ + +L+YN GGK NRGL+VV ++R L
Sbjct: 37 QDFVQHFSQIVRVLTEDEMGHPEI---GDAIARLKEVLEYNAIGGKYNRGLTVVVAFREL 93
Query: 62 KEGKELTDDEFFLSSALGWCIEWLQAYFLVLDDIMDGSHTRRGQPCWFRVPKVGMIAAND 121
E ++ D + +GWC+E LQA+FLV DDIMD S TRRGQ CW++ P VG+ A ND
Sbjct: 94 VEPRKQDADSLQRAWTVGWCVELLQAFFLVADDIMDSSLTRRGQICWYQKPGVGLDAIND 153
Query: 122 GVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEGEKDLSKYSLP 181
LL I R+LK + R++PYY++L++LF + +QT GQ +DL+T +G DL +++
Sbjct: 154 ANLLEACIYRLLKLYCREQPYYLNLIELFLQSSYQTEIGQTLDLLTAPQGNVDLVRFTEK 213
Query: 182 LHRRIVQYKTAYYSFYLPVACALLMAGENLDK-HVEVKDILVQMGIYFQVQDDFLDCFGS 240
++ IV+YKTA+YSFYLP+A A+ MAG + +K H K IL++MG +FQ+QDD+LD FG
Sbjct: 214 RYKSIVKYKTAFYSFYLPIAAAMYMAGIDGEKEHANAKKILLEMGEFFQIQDDYLDLFGD 273
Query: 241 PEVIGKVGTDIEDYKCSWLVVKALELCNEEQKKLVHENYGKVDPACVAKVKELYKTLDLE 300
P V GK+GTDI+D KCSWLVV+ L+ EQ +++ ENYG+ + VA+VK LY+ LDL
Sbjct: 274 PSVTGKIGTDIQDNKCSWLVVQCLQRATPEQYQILKENYGQKEAEKVARVKALYEELDLP 333
Query: 301 GAFVEYEKESYEKLTKSIEAHPTKEVQAVLKSFLAKIYKRQK 342
F++YE++SY + IE + AV KIYKR+K
Sbjct: 334 AVFLQYEEDSYSHIMALIEQYAAPLPPAVFLGLARKIYKRRK 375
>pdb|1YQ7|A Chain A, Human Farnesyl Diphosphate Synthase Complexed With
Risedronate
pdb|1YV5|A Chain A, Human Farnesyl Diphosphate Synthase Complexed With Mg And
Risedronate
pdb|2OPN|A Chain A, Human Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate Bph- 527
pdb|2OPM|A Chain A, Human Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate Bph- 461
Length = 374
Score = 302 bits (774), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 154/342 (45%), Positives = 222/342 (64%), Gaps = 4/342 (1%)
Query: 2 SDLKSRFIEVYGVLKQELLNDPAFEFDHDSRQWVDRMLDYNVPGGKLNRGLSVVDSYRLL 61
D F ++ VL ++ + P D+ + +L+YN GGK NRGL+VV ++R L
Sbjct: 36 QDFVQHFSQIVRVLTEDEMGHPEI---GDAIARLKEVLEYNAIGGKYNRGLTVVVAFREL 92
Query: 62 KEGKELTDDEFFLSSALGWCIEWLQAYFLVLDDIMDGSHTRRGQPCWFRVPKVGMIAAND 121
E ++ D + +GWC+E LQA+FLV DDIMD S TRRGQ CW++ P VG+ A ND
Sbjct: 93 VEPRKQDADSLQRAWTVGWCVELLQAFFLVADDIMDSSLTRRGQICWYQKPGVGLDAIND 152
Query: 122 GVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEGEKDLSKYSLP 181
LL I R+LK + R++PYY++L++LF + +QT GQ +DL+T +G DL +++
Sbjct: 153 ANLLEACIYRLLKLYCREQPYYLNLIELFLQSSYQTEIGQTLDLLTAPQGNVDLVRFTEK 212
Query: 182 LHRRIVQYKTAYYSFYLPVACALLMAGENLDK-HVEVKDILVQMGIYFQVQDDFLDCFGS 240
++ IV+YKTA+YSFYLP+A A+ MAG + +K H K IL++MG +FQ+QDD+LD FG
Sbjct: 213 RYKSIVKYKTAFYSFYLPIAAAMYMAGIDGEKEHANAKKILLEMGEFFQIQDDYLDLFGD 272
Query: 241 PEVIGKVGTDIEDYKCSWLVVKALELCNEEQKKLVHENYGKVDPACVAKVKELYKTLDLE 300
P V GK+GTDI+D KCSWLVV+ L+ EQ +++ ENYG+ + VA+VK LY+ LDL
Sbjct: 273 PSVTGKIGTDIQDNKCSWLVVQCLQRATPEQYQILKENYGQKEAEKVARVKALYEELDLP 332
Query: 301 GAFVEYEKESYEKLTKSIEAHPTKEVQAVLKSFLAKIYKRQK 342
F++YE++SY + IE + AV KIYKR+K
Sbjct: 333 AVFLQYEEDSYSHIMALIEQYAAPLPPAVFLGLARKIYKRRK 374
>pdb|3B7L|A Chain A, Human Farnesyl Diphosphate Synthase Complexed With Mg And
Minodronate
Length = 356
Score = 302 bits (774), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 154/341 (45%), Positives = 222/341 (65%), Gaps = 4/341 (1%)
Query: 3 DLKSRFIEVYGVLKQELLNDPAFEFDHDSRQWVDRMLDYNVPGGKLNRGLSVVDSYRLLK 62
D F ++ VL ++ + P D+ + +L+YN GGK NRGL+VV ++R L
Sbjct: 19 DFVQHFSQIVRVLTEDEMGHPEI---GDAIARLKEVLEYNAIGGKYNRGLTVVVAFRELV 75
Query: 63 EGKELTDDEFFLSSALGWCIEWLQAYFLVLDDIMDGSHTRRGQPCWFRVPKVGMIAANDG 122
E ++ D + +GWC+E LQA+FLV DDIMD S TRRGQ CW++ P VG+ A ND
Sbjct: 76 EPRKQDADSLQRAWTVGWCVELLQAFFLVADDIMDSSLTRRGQICWYQKPGVGLDAINDA 135
Query: 123 VLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEGEKDLSKYSLPL 182
LL I R+LK + R++PYY++L++LF + +QT GQ +DL+T +G DL +++
Sbjct: 136 NLLEACIYRLLKLYCREQPYYLNLIELFLQSSYQTEIGQTLDLLTAPQGNVDLVRFTEKR 195
Query: 183 HRRIVQYKTAYYSFYLPVACALLMAGENLDK-HVEVKDILVQMGIYFQVQDDFLDCFGSP 241
++ IV+YKTA+YSFYLP+A A+ MAG + +K H K IL++MG +FQ+QDD+LD FG P
Sbjct: 196 YKSIVKYKTAFYSFYLPIAAAMYMAGIDGEKEHANAKKILLEMGEFFQIQDDYLDLFGDP 255
Query: 242 EVIGKVGTDIEDYKCSWLVVKALELCNEEQKKLVHENYGKVDPACVAKVKELYKTLDLEG 301
V GK+GTDI+D KCSWLVV+ L+ EQ +++ ENYG+ + VA+VK LY+ LDL
Sbjct: 256 SVTGKIGTDIQDNKCSWLVVQCLQRATPEQYQILKENYGQKEAEKVARVKALYEELDLPA 315
Query: 302 AFVEYEKESYEKLTKSIEAHPTKEVQAVLKSFLAKIYKRQK 342
F++YE++SY + IE + AV KIYKR+K
Sbjct: 316 VFLQYEEDSYSHIMALIEQYAAPLPPAVFLGLARKIYKRRK 356
>pdb|2RAH|A Chain A, Human Fdps Synthase In Complex With Novel Inhibitor
pdb|2VF6|A Chain A, Human Fdps Synthase In Complex With Minodronate
Length = 378
Score = 302 bits (773), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 154/342 (45%), Positives = 222/342 (64%), Gaps = 4/342 (1%)
Query: 2 SDLKSRFIEVYGVLKQELLNDPAFEFDHDSRQWVDRMLDYNVPGGKLNRGLSVVDSYRLL 61
D F ++ VL ++ + P D+ + +L+YN GGK NRGL+VV ++R L
Sbjct: 40 QDFVQHFSQIVRVLTEDEMGHPEI---GDAIARLKEVLEYNAIGGKYNRGLTVVVAFREL 96
Query: 62 KEGKELTDDEFFLSSALGWCIEWLQAYFLVLDDIMDGSHTRRGQPCWFRVPKVGMIAAND 121
E ++ D + +GWC+E LQA+FLV DDIMD S TRRGQ CW++ P VG+ A ND
Sbjct: 97 VEPRKQDADSLQRAWTVGWCVELLQAFFLVADDIMDSSLTRRGQICWYQKPGVGLDAIND 156
Query: 122 GVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEGEKDLSKYSLP 181
LL I R+LK + R++PYY++L++LF + +QT GQ +DL+T +G DL +++
Sbjct: 157 ANLLEACIYRLLKLYCREQPYYLNLIELFLQSSYQTEIGQTLDLLTAPQGNVDLVRFTEK 216
Query: 182 LHRRIVQYKTAYYSFYLPVACALLMAGENLDK-HVEVKDILVQMGIYFQVQDDFLDCFGS 240
++ IV+YKTA+YSFYLP+A A+ MAG + +K H K IL++MG +FQ+QDD+LD FG
Sbjct: 217 RYKSIVKYKTAFYSFYLPIAAAMYMAGIDGEKEHANAKKILLEMGEFFQIQDDYLDLFGD 276
Query: 241 PEVIGKVGTDIEDYKCSWLVVKALELCNEEQKKLVHENYGKVDPACVAKVKELYKTLDLE 300
P V GK+GTDI+D KCSWLVV+ L+ EQ +++ ENYG+ + VA+VK LY+ LDL
Sbjct: 277 PSVTGKIGTDIQDNKCSWLVVQCLQRATPEQYQILKENYGQKEAEKVARVKALYEELDLP 336
Query: 301 GAFVEYEKESYEKLTKSIEAHPTKEVQAVLKSFLAKIYKRQK 342
F++YE++SY + IE + AV KIYKR+K
Sbjct: 337 AVFLQYEEDSYSHIMALIEQYAAPLPPAVFLGLARKIYKRRK 378
>pdb|2QIS|A Chain A, Crystal Structure Of Human Farnesyl Pyrophosphate Synthase
T210s Mutant Bound To Risedronate
Length = 374
Score = 301 bits (770), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 153/341 (44%), Positives = 222/341 (65%), Gaps = 4/341 (1%)
Query: 3 DLKSRFIEVYGVLKQELLNDPAFEFDHDSRQWVDRMLDYNVPGGKLNRGLSVVDSYRLLK 62
D F ++ VL ++ + P D+ + +L+YN GGK NRGL+VV ++R L
Sbjct: 37 DFVQHFSQIVRVLTEDEMGHPEI---GDAIARLKEVLEYNAIGGKYNRGLTVVVAFRELV 93
Query: 63 EGKELTDDEFFLSSALGWCIEWLQAYFLVLDDIMDGSHTRRGQPCWFRVPKVGMIAANDG 122
E ++ D + +GWC+E LQA+FLV DDIMD S TRRGQ CW++ P VG+ A ND
Sbjct: 94 EPRKQDADSLQRAWTVGWCVELLQAFFLVADDIMDSSLTRRGQICWYQKPGVGLDAINDA 153
Query: 123 VLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEGEKDLSKYSLPL 182
LL I R+LK + R++PYY++L++LF + +QT GQ +DL+T +G DL +++
Sbjct: 154 NLLEACIYRLLKLYCREQPYYLNLIELFLQSSYQTEIGQTLDLLTAPQGNVDLVRFTEKR 213
Query: 183 HRRIVQYKTAYYSFYLPVACALLMAGENLDK-HVEVKDILVQMGIYFQVQDDFLDCFGSP 241
++ IV+YK+A+YSFYLP+A A+ MAG + +K H K IL++MG +FQ+QDD+LD FG P
Sbjct: 214 YKSIVKYKSAFYSFYLPIAAAMYMAGIDGEKEHANAKKILLEMGEFFQIQDDYLDLFGDP 273
Query: 242 EVIGKVGTDIEDYKCSWLVVKALELCNEEQKKLVHENYGKVDPACVAKVKELYKTLDLEG 301
V GK+GTDI+D KCSWLVV+ L+ EQ +++ ENYG+ + VA+VK LY+ LDL
Sbjct: 274 SVTGKIGTDIQDNKCSWLVVQCLQRATPEQYQILKENYGQKEAEKVARVKALYEELDLPA 333
Query: 302 AFVEYEKESYEKLTKSIEAHPTKEVQAVLKSFLAKIYKRQK 342
F++YE++SY + IE + AV KIYKR+K
Sbjct: 334 VFLQYEEDSYSHIMALIEQYAAPLPPAVFLGLARKIYKRRK 374
>pdb|3CP6|A Chain A, Crystal Structure Of Human Farnesyl Diphosphate Synthase
(T201a Mutant) Complexed With Mg And Biphosphonate
Inhibitor
Length = 376
Score = 300 bits (769), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 153/342 (44%), Positives = 221/342 (64%), Gaps = 4/342 (1%)
Query: 2 SDLKSRFIEVYGVLKQELLNDPAFEFDHDSRQWVDRMLDYNVPGGKLNRGLSVVDSYRLL 61
D F ++ VL ++ + P D+ + +L+YN GGK NRGL+VV ++R L
Sbjct: 38 QDFVQHFSQIVRVLTEDEMGHPEI---GDAIARLKEVLEYNAIGGKYNRGLTVVVAFREL 94
Query: 62 KEGKELTDDEFFLSSALGWCIEWLQAYFLVLDDIMDGSHTRRGQPCWFRVPKVGMIAAND 121
E ++ D + +GWC+E LQA+FLV DDIMD S TRRGQ CW++ P VG+ A ND
Sbjct: 95 VEPRKQDADSLQRAWTVGWCVELLQAFFLVADDIMDSSLTRRGQICWYQKPGVGLDAIND 154
Query: 122 GVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEGEKDLSKYSLP 181
LL I R+LK + R++PYY++L++LF + +QT GQ +DL+T +G DL +++
Sbjct: 155 ANLLEACIYRLLKLYCREQPYYLNLIELFLQSSYQTEIGQTLDLLTAPQGNVDLVRFTEK 214
Query: 182 LHRRIVQYKTAYYSFYLPVACALLMAGENLDK-HVEVKDILVQMGIYFQVQDDFLDCFGS 240
++ IV+YK A+YSFYLP+A A+ MAG + +K H K IL++MG +FQ+QDD+LD FG
Sbjct: 215 RYKSIVKYKAAFYSFYLPIAAAMYMAGIDGEKEHANAKKILLEMGEFFQIQDDYLDLFGD 274
Query: 241 PEVIGKVGTDIEDYKCSWLVVKALELCNEEQKKLVHENYGKVDPACVAKVKELYKTLDLE 300
P V GK+GTDI+D KCSWLVV+ L+ EQ +++ ENYG+ + VA+VK LY+ LDL
Sbjct: 275 PSVTGKIGTDIQDNKCSWLVVQCLQRATPEQYQILKENYGQKEAEKVARVKALYEELDLP 334
Query: 301 GAFVEYEKESYEKLTKSIEAHPTKEVQAVLKSFLAKIYKRQK 342
F++YE++SY + IE + AV KIYKR+K
Sbjct: 335 AVFLQYEEDSYSHIMALIEQYAAPLPPAVFLGLARKIYKRRK 376
>pdb|3EGT|A Chain A, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate Bph-722
pdb|3EGT|B Chain B, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate Bph-722
Length = 413
Score = 234 bits (596), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 143/365 (39%), Positives = 208/365 (56%), Gaps = 33/365 (9%)
Query: 8 FIEVYGVLKQELLNDPAFEFDHDSRQ--WVDRMLDYNVPGGKLNRGLSVVDSYRLL---- 61
F++VY ++ LL + +FD D + ++ +M+D GGK NRGL+V+D L
Sbjct: 52 FMQVYDEIQMFLLEELELKFDMDPNRVRYLRKMMDTTCLGGKYNRGLTVIDVAESLLSLS 111
Query: 62 --KEGKELTDDEFFLSSAL------GWCIEWLQAYFLVLDDIMDGSHTRRGQPCWFRVPK 113
G+E DD L GW IE+LQA++LV DDIMD S TRRG+PCW+R P
Sbjct: 112 PNNNGEE--DDGARRKRVLHDACVCGWMIEFLQAHYLVEDDIMDNSVTRRGKPCWYRHPD 169
Query: 114 VGM-IAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEGE 172
V + A NDG+LL++ + + F D+P+ DLL FN V++ TA GQ+ D+ + +
Sbjct: 170 VTVQCAINDGLLLKSWTHMMAMHFFADRPFLQDLLCRFNRVDYTTAVGQLYDVTSMFDSN 229
Query: 173 K-----------DLSKYSLPLHRRIVQYKTAYYSFYLPVACALLM--AGENLDKHVEVKD 219
K D ++++L ++RIV+YKTAYY++ LP+ L++ A +D V ++
Sbjct: 230 KLDPDVSQPTTTDFAEFTLSNYKRIVKYKTAYYTYLLPLVMGLIVSEALPTVDMGV-TEE 288
Query: 220 ILVQMGIYFQVQDDFLDCFGSPEVIGKVGTDIEDYKCSWLVVKALELCNEEQKKLVHENY 279
+ + MG YFQVQDD +DCF PE +GKVGTDI+D KCSWL V L + Q NY
Sbjct: 289 LAMLMGEYFQVQDDVMDCFTPPERLGKVGTDIQDAKCSWLAVTFLAKASSAQVAEFKANY 348
Query: 280 GKVDPACVAKVKELYKTLDLEGAFVEYEKESYEKLTKSIEAHP--TKEVQAVLKSFLAKI 337
G D VA V+ LY+ DL+G +V YE E++ + IE + A +++ K
Sbjct: 349 GSGDSEKVATVRRLYEEADLQGDYVAYEAAVAEQVKELIEKLRLCSPGFAASVETLWGKT 408
Query: 338 YKRQK 342
YKRQK
Sbjct: 409 YKRQK 413
>pdb|2EWG|A Chain A, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Minodronate
pdb|2EWG|B Chain B, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Minodronate
pdb|2I19|A Chain A, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate
pdb|2I19|B Chain B, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate
pdb|2OGD|A Chain A, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate Bph-527
pdb|2OGD|B Chain B, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate Bph-527
pdb|2P1C|A Chain A, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate Bph-210
pdb|2P1C|B Chain B, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate Bph-210
pdb|3DYF|A Chain A, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate Bph-461 And Isopentyl Diphosphate
pdb|3DYF|B Chain B, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate Bph-461 And Isopentyl Diphosphate
pdb|3DYG|A Chain A, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate Bph-461
pdb|3DYG|B Chain B, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate Bph-461
pdb|3DYH|A Chain A, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate Bph-721
pdb|3DYH|B Chain B, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate Bph-721
pdb|3EFQ|A Chain A, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate Bph-714
pdb|3EFQ|B Chain B, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate Bph-714
Length = 390
Score = 234 bits (596), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 143/365 (39%), Positives = 208/365 (56%), Gaps = 33/365 (9%)
Query: 8 FIEVYGVLKQELLNDPAFEFDHDSRQ--WVDRMLDYNVPGGKLNRGLSVVDSYRLL---- 61
F++VY ++ LL + +FD D + ++ +M+D GGK NRGL+V+D L
Sbjct: 29 FMQVYDEIQMFLLEELELKFDMDPNRVRYLRKMMDTTCLGGKYNRGLTVIDVAESLLSLS 88
Query: 62 --KEGKELTDDEFFLSSAL------GWCIEWLQAYFLVLDDIMDGSHTRRGQPCWFRVPK 113
G+E DD L GW IE+LQA++LV DDIMD S TRRG+PCW+R P
Sbjct: 89 PNNNGEE--DDGARRKRVLHDACVCGWMIEFLQAHYLVEDDIMDNSVTRRGKPCWYRHPD 146
Query: 114 VGM-IAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEGE 172
V + A NDG+LL++ + + F D+P+ DLL FN V++ TA GQ+ D+ + +
Sbjct: 147 VTVQCAINDGLLLKSWTHMMAMHFFADRPFLQDLLCRFNRVDYTTAVGQLYDVTSMFDSN 206
Query: 173 K-----------DLSKYSLPLHRRIVQYKTAYYSFYLPVACALLM--AGENLDKHVEVKD 219
K D ++++L ++RIV+YKTAYY++ LP+ L++ A +D V ++
Sbjct: 207 KLDPDVSQPTTTDFAEFTLSNYKRIVKYKTAYYTYLLPLVMGLIVSEALPTVDMGV-TEE 265
Query: 220 ILVQMGIYFQVQDDFLDCFGSPEVIGKVGTDIEDYKCSWLVVKALELCNEEQKKLVHENY 279
+ + MG YFQVQDD +DCF PE +GKVGTDI+D KCSWL V L + Q NY
Sbjct: 266 LAMLMGEYFQVQDDVMDCFTPPERLGKVGTDIQDAKCSWLAVTFLAKASSAQVAEFKANY 325
Query: 280 GKVDPACVAKVKELYKTLDLEGAFVEYEKESYEKLTKSIEAHP--TKEVQAVLKSFLAKI 337
G D VA V+ LY+ DL+G +V YE E++ + IE + A +++ K
Sbjct: 326 GSGDSEKVATVRRLYEEADLQGDYVAYEAAVAEQVKELIEKLRLCSPGFAASVETLWGKT 385
Query: 338 YKRQK 342
YKRQK
Sbjct: 386 YKRQK 390
>pdb|1YHK|A Chain A, Trypanosoma Cruzi Farnesyl Diphosphate Synthase
pdb|1YHL|A Chain A, Structure Of The Complex Of Trypanosoma Cruzi Farnesyl
Diphosphate Synthase With Risedronate, Dmapp And Mg+2
pdb|3IBA|A Chain A, Crystal Structure Of The Complex Of Trypanosoma Cruzi
Farnesyl Diphosphate Synthase With Zoledronate, Ipp And
Mg2+
pdb|3ICK|A Chain A, Trypanosoma Cruzi Farnesyl Diphosphate Synthase Homodimer
In Complex With Minodronate And Isopentenyl Disphosphate
pdb|3ICM|A Chain A, Trypanosoma Cruzi Farnesyl Diphosphate Synthase Homodimer
In Complex With Isopentenyl Pyrophosphate, Mg2+ And
1-(2-
Hydroxy-2,2-Bis-Phosphono-Ethyl)-3-Phenyl-Pyridinium
pdb|3ICN|A Chain A, Trypanosoma Cruzi Farnesyl Diphosphate Synthase Homodimer
In Complex With Isopentenyl Pyrophosphate And
3-Fluoro-1-(2-
Hydroxy-2,2-Bis-Phosphono-Ethyl)-Pyridinium
pdb|3ICZ|A Chain A, Trypanosoma Cruzi Farnesyl Diphosphate Synthase Homodimer
In Complex With
1-(2,2-Bis-Phosphono-Ethyl)-3-Butyl-Pyridinium And
Isopentenyl Pyrophosphate
pdb|3ID0|A Chain A, Trypanosoma Cruzi Farnesyl Diphosphate Synthase Homodimer
In Complex With
3-Fluoro-1-(2-Hydroxy-2,2-Bisphosphono-Ethyl) Pyridinium
pdb|4DWB|A Chain A, Crystal Structure Of Trypanosoma Cruzi Farnesyl
Diphosphate Synthase In Complex With
[2-(n-pentylamino)ethane-1,1-diyl]bisphosphonic Acid And
Mg2+
pdb|4DWG|A Chain A, Crystal Structure Of Trypanosome Cruzi Farnesyl
Diphosphate Synthase In Complex With
[2-(n-heptylamino)ethane-1,1-diyl]bisphosphonic Acid And
Mg2+
pdb|4DXJ|A Chain A, Crystal Structure Of Trypanosome Cruzi Farnesyl
Diphosphate Synthase In Complex With
[2-(n-propylamino)ethane-1,1-diyl]bisphosphonic Acid And
Mg2+
pdb|4DXJ|B Chain B, Crystal Structure Of Trypanosome Cruzi Farnesyl
Diphosphate Synthase In Complex With
[2-(n-propylamino)ethane-1,1-diyl]bisphosphonic Acid And
Mg2+
pdb|4DXJ|C Chain C, Crystal Structure Of Trypanosome Cruzi Farnesyl
Diphosphate Synthase In Complex With
[2-(n-propylamino)ethane-1,1-diyl]bisphosphonic Acid And
Mg2+
Length = 362
Score = 226 bits (576), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 128/333 (38%), Positives = 194/333 (58%), Gaps = 21/333 (6%)
Query: 7 RFIEVYGVLKQELLND--PAFEFDHDSRQWVDRMLDYNVPGGKLNRGLSVVD---SYRLL 61
RF+ VY ++ LL+ +E D + +++ M+D GGK RG++VV+ + +
Sbjct: 6 RFLSVYDEVQAFLLDQLQSKYEIDPNRARYLRIMMDTTCLGGKYFRGMTVVNVAEGFLAV 65
Query: 62 KEGKELTDDEFFLSSALG-WCIEWLQAYFLVLDDIMDGSHTRRGQPCWFRVPKVGM-IAA 119
+ E T + + +G W IE+LQA++LV DDIMDGS RRG+PCW+R P V A
Sbjct: 66 TQHDEATKERILHDACVGGWMIEFLQAHYLVEDDIMDGSVMRRGKPCWYRFPGVTTQCAI 125
Query: 120 NDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEGEK------ 173
NDG++L++ + ++F D+P+ DLL LF +V++ TA GQM D+ + + K
Sbjct: 126 NDGIILKSWTQIMAWHYFADRPFLKDLLCLFQKVDYATAVGQMYDVTSMCDSNKLDPEVA 185
Query: 174 -----DLSKYSLPLHRRIVQYKTAYYSFYLPVACALLM--AGENLDKHVEVKDILVQMGI 226
D ++++ +++RIV+YKT +Y++ LP+ L + A +++ ++ V+ + +G
Sbjct: 186 QPMTTDFAEFTPAIYKRIVKYKTTFYTYLLPLVMGLFVSEAAASVEMNL-VERVAHLIGE 244
Query: 227 YFQVQDDFLDCFGSPEVIGKVGTDIEDYKCSWLVVKALELCNEEQKKLVHENYGKVDPAC 286
YFQVQDD +DCF PE +GKVGTDIED KCSWL V L N Q NYG DPA
Sbjct: 245 YFQVQDDVMDCFTPPEQLGKVGTDIEDAKCSWLAVTFLGKANAAQVAEFKANYGDKDPAK 304
Query: 287 VAKVKELYKTLDLEGAFVEYEKESYEKLTKSIE 319
VA VK LY +L+ F YE E ++ IE
Sbjct: 305 VAVVKRLYSEANLQADFAAYEAEVVREVESLIE 337
>pdb|4E1E|A Chain A, Crystal Structure Of Trypanosome Cruzi Farnesyl
Diphosphate Synthase In Complex With
[2-(n-hexylamino)ethane-1,1-diyl]bisphosphonic Acid And
Mg2+
Length = 361
Score = 226 bits (576), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 128/333 (38%), Positives = 194/333 (58%), Gaps = 21/333 (6%)
Query: 7 RFIEVYGVLKQELLND--PAFEFDHDSRQWVDRMLDYNVPGGKLNRGLSVVD---SYRLL 61
RF+ VY ++ LL+ +E D + +++ M+D GGK RG++VV+ + +
Sbjct: 5 RFLSVYDEVQAFLLDQLQSKYEIDPNRARYLRIMMDTTCLGGKYFRGMTVVNVAEGFLAV 64
Query: 62 KEGKELTDDEFFLSSALG-WCIEWLQAYFLVLDDIMDGSHTRRGQPCWFRVPKVGM-IAA 119
+ E T + + +G W IE+LQA++LV DDIMDGS RRG+PCW+R P V A
Sbjct: 65 TQHDEATKERILHDACVGGWMIEFLQAHYLVEDDIMDGSVMRRGKPCWYRFPGVTTQCAI 124
Query: 120 NDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEGEK------ 173
NDG++L++ + ++F D+P+ DLL LF +V++ TA GQM D+ + + K
Sbjct: 125 NDGIILKSWTQIMAWHYFADRPFLKDLLCLFQKVDYATAVGQMYDVTSMCDSNKLDPEVA 184
Query: 174 -----DLSKYSLPLHRRIVQYKTAYYSFYLPVACALLM--AGENLDKHVEVKDILVQMGI 226
D ++++ +++RIV+YKT +Y++ LP+ L + A +++ ++ V+ + +G
Sbjct: 185 QPMTTDFAEFTPAIYKRIVKYKTTFYTYLLPLVMGLFVSEAAASVEMNL-VERVAHLIGE 243
Query: 227 YFQVQDDFLDCFGSPEVIGKVGTDIEDYKCSWLVVKALELCNEEQKKLVHENYGKVDPAC 286
YFQVQDD +DCF PE +GKVGTDIED KCSWL V L N Q NYG DPA
Sbjct: 244 YFQVQDDVMDCFTPPEQLGKVGTDIEDAKCSWLAVTFLGKANAAQVAEFKANYGDKDPAK 303
Query: 287 VAKVKELYKTLDLEGAFVEYEKESYEKLTKSIE 319
VA VK LY +L+ F YE E ++ IE
Sbjct: 304 VAVVKRLYSEANLQADFAAYEAEVVREVESLIE 336
>pdb|4DZW|A Chain A, Crystal Structure Of Trypanosome Cruzi Farnesyl
Diphosphate Synthase In Complex With
[2-(cyclohexylamino)ethane-1,1-diyl]bisphosphonic Acid
And Mg2+
Length = 362
Score = 226 bits (576), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 128/333 (38%), Positives = 194/333 (58%), Gaps = 21/333 (6%)
Query: 7 RFIEVYGVLKQELLND--PAFEFDHDSRQWVDRMLDYNVPGGKLNRGLSVVD---SYRLL 61
RF+ VY ++ LL+ +E D + +++ M+D GGK RG++VV+ + +
Sbjct: 6 RFLSVYDEVQAFLLDQLQSKYEIDPNRARYLRIMMDTTCLGGKYFRGMTVVNVAEGFLAV 65
Query: 62 KEGKELTDDEFFLSSALG-WCIEWLQAYFLVLDDIMDGSHTRRGQPCWFRVPKVGM-IAA 119
+ E T + + +G W IE+LQA++LV DDIMDGS RRG+PCW+R P V A
Sbjct: 66 TQHDEATKERILHDACVGGWMIEFLQAHYLVEDDIMDGSVMRRGKPCWYRFPGVTTQCAI 125
Query: 120 NDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEGEK------ 173
NDG++L++ + ++F D+P+ DLL LF +V++ TA GQM D+ + + K
Sbjct: 126 NDGIILKSWTQIMAWHYFADRPFLKDLLCLFQKVDYATAVGQMYDVTSMCDSNKLDPEVA 185
Query: 174 -----DLSKYSLPLHRRIVQYKTAYYSFYLPVACALLM--AGENLDKHVEVKDILVQMGI 226
D ++++ +++RIV+YKT +Y++ LP+ L + A +++ ++ V+ + +G
Sbjct: 186 QPMTTDFAEFTPAIYKRIVKYKTTFYTYLLPLVMGLFVSEAAASVEMNL-VERVAHLIGE 244
Query: 227 YFQVQDDFLDCFGSPEVIGKVGTDIEDYKCSWLVVKALELCNEEQKKLVHENYGKVDPAC 286
YFQVQDD +DCF PE +GKVGTDIED KCSWL V L N Q NYG DPA
Sbjct: 245 YFQVQDDVMDCFTPPEQLGKVGTDIEDAKCSWLAVTFLGKANAAQVAEFKANYGDKDPAK 304
Query: 287 VAKVKELYKTLDLEGAFVEYEKESYEKLTKSIE 319
VA VK LY +L+ F YE E ++ IE
Sbjct: 305 VAVVKRLYSEANLQADFAAYEAEVVREVESLIE 337
>pdb|1YHM|A Chain A, Structure Of The Complex Of Trypanosoma Cruzi Farnesyl
Disphosphate Synthase With Alendronate, Isopentenyl
Diphosphate And Mg+2
pdb|1YHM|B Chain B, Structure Of The Complex Of Trypanosoma Cruzi Farnesyl
Disphosphate Synthase With Alendronate, Isopentenyl
Diphosphate And Mg+2
pdb|1YHM|C Chain C, Structure Of The Complex Of Trypanosoma Cruzi Farnesyl
Disphosphate Synthase With Alendronate, Isopentenyl
Diphosphate And Mg+2
Length = 362
Score = 213 bits (542), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 125/333 (37%), Positives = 187/333 (56%), Gaps = 21/333 (6%)
Query: 7 RFIEVYGVLKQELLND--PAFEFDHDSRQWVDRMLDYNVPGGKLNRGLSVVD---SYRLL 61
RF+ VY ++ LL+ +E D + +++ D GGK RG +VV+ + +
Sbjct: 6 RFLSVYDEVQAFLLDQLQSKYEIDPNRARYLRIXXDTTCLGGKYFRGXTVVNVAEGFLAV 65
Query: 62 KEGKELTDDEFFLSSALG-WCIEWLQAYFLVLDDIMDGSHTRRGQPCWFRVPKVGM-IAA 119
+ E T + + +G W IE+LQA++LV DDI DGS RRG+PCW+R P V A
Sbjct: 66 TQHDEATKERILHDACVGGWXIEFLQAHYLVEDDIXDGSVXRRGKPCWYRFPGVTTQCAI 125
Query: 120 NDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEGEK------ 173
NDG++L++ ++F D+P+ DLL LF +V++ TA GQ D+ + + K
Sbjct: 126 NDGIILKSWTQIXAWHYFADRPFLKDLLCLFQKVDYATAVGQXYDVTSXCDSNKLDPEVA 185
Query: 174 -----DLSKYSLPLHRRIVQYKTAYYSFYLPVACALLM--AGENLDKHVEVKDILVQMGI 226
D ++++ +++RIV+YKT +Y++ LP+ L + A +++ ++ V+ + +G
Sbjct: 186 QPXTTDFAEFTPAIYKRIVKYKTTFYTYLLPLVXGLFVSEAAASVEXNL-VERVAHLIGE 244
Query: 227 YFQVQDDFLDCFGSPEVIGKVGTDIEDYKCSWLVVKALELCNEEQKKLVHENYGKVDPAC 286
YFQVQDD DCF PE +GKVGTDIED KCSWL V L N Q NYG DPA
Sbjct: 245 YFQVQDDVXDCFTPPEQLGKVGTDIEDAKCSWLAVTFLGKANAAQVAEFKANYGDKDPAK 304
Query: 287 VAKVKELYKTLDLEGAFVEYEKESYEKLTKSIE 319
VA VK LY +L+ F YE E ++ IE
Sbjct: 305 VAVVKRLYSEANLQADFAAYEAEVVREVESLIE 337
>pdb|3CC9|A Chain A, Crystal Structure Of Plasmodium Vivax Putative Polyprenyl
Pyrophosphate Synthase In Complex With Geranylgeranyl
Diphosphate
pdb|3CC9|B Chain B, Crystal Structure Of Plasmodium Vivax Putative Polyprenyl
Pyrophosphate Synthase In Complex With Geranylgeranyl
Diphosphate
pdb|3CC9|C Chain C, Crystal Structure Of Plasmodium Vivax Putative Polyprenyl
Pyrophosphate Synthase In Complex With Geranylgeranyl
Diphosphate
pdb|3CC9|D Chain D, Crystal Structure Of Plasmodium Vivax Putative Polyprenyl
Pyrophosphate Synthase In Complex With Geranylgeranyl
Diphosphate
pdb|3EZ3|A Chain A, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Pvx_092040 With
Zoledronate And Ipp Bound
pdb|3EZ3|B Chain B, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Pvx_092040 With
Zoledronate And Ipp Bound
pdb|3EZ3|C Chain C, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Pvx_092040 With
Zoledronate And Ipp Bound
pdb|3EZ3|D Chain D, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Pvx_092040 With
Zoledronate And Ipp Bound
pdb|3LDW|A Chain A, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Pvx_092040 With
Zoledronate And Ipp Bound
pdb|3LDW|B Chain B, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Pvx_092040 With
Zoledronate And Ipp Bound
pdb|3LDW|C Chain C, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Pvx_092040 With
Zoledronate And Ipp Bound
pdb|3LDW|D Chain D, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Pvx_092040 With
Zoledronate And Ipp Bound
pdb|3PH7|A Chain A, Crystal Structure Of Plasmodium Vivax Putative Polyprenyl
Pyrophosphate Synthase In Complex With Geranylgeranyl
Diphosphate
pdb|3PH7|B Chain B, Crystal Structure Of Plasmodium Vivax Putative Polyprenyl
Pyrophosphate Synthase In Complex With Geranylgeranyl
Diphosphate
pdb|3PH7|C Chain C, Crystal Structure Of Plasmodium Vivax Putative Polyprenyl
Pyrophosphate Synthase In Complex With Geranylgeranyl
Diphosphate
pdb|3PH7|D Chain D, Crystal Structure Of Plasmodium Vivax Putative Polyprenyl
Pyrophosphate Synthase In Complex With Geranylgeranyl
Diphosphate
pdb|3RBM|A Chain A, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Complexed With Bph
-703
pdb|3RBM|B Chain B, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Complexed With Bph
-703
pdb|3RBM|C Chain C, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Complexed With Bph
-703
pdb|3RBM|D Chain D, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Complexed With Bph
-703
pdb|3RYW|A Chain A, Crystal Structure Of P. Vivax Geranylgeranyl Diphosphate
Synthase Complexed With Bph-811
pdb|3RYW|B Chain B, Crystal Structure Of P. Vivax Geranylgeranyl Diphosphate
Synthase Complexed With Bph-811
pdb|3RYW|C Chain C, Crystal Structure Of P. Vivax Geranylgeranyl Diphosphate
Synthase Complexed With Bph-811
pdb|3RYW|D Chain D, Crystal Structure Of P. Vivax Geranylgeranyl Diphosphate
Synthase Complexed With Bph-811
Length = 396
Score = 202 bits (513), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 115/321 (35%), Positives = 180/321 (56%), Gaps = 27/321 (8%)
Query: 38 MLDYNVPGGKLNRGLSVVDSYRLLKEGKELTDDEFFLSSALGWCIEWLQAYFLVLDDIMD 97
+ DYN GGK NRG+ V+ Y +K +++ E+ ++ L WCIE LQA FLV DDIMD
Sbjct: 72 LFDYNCLGGKNNRGILVILIYEYVK-NRDINSSEWEKAACLAWCIEILQAAFLVADDIMD 130
Query: 98 GSHTRRGQPCWFRVPKVGM-IAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQ 156
RR + CW+ + V A ND +LL N I ++++ + R++ YVD++ F + +
Sbjct: 131 KGEMRRNKYCWYLLKDVETKNAVNDVLLLYNSIYKLIEIYLRNESCYVDVIATFRDATLK 190
Query: 157 TASGQMIDLITTIEGEK---------------------DLSKYSLPLHRRIVQYKTAYYS 195
T GQ +D T I +K D++ + +++ IV +KTAYYS
Sbjct: 191 TIIGQHLD--TNIFSDKYSDAHREIDVNNINVPEQPVIDINMINFGVYKNIVIHKTAYYS 248
Query: 196 FYLPVACALLMAGENLDKHV--EVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVGTDIED 253
F+LP+ C +L+AG +D + +++DI + MG YFQ+ DD+LD FG GKVG+DI++
Sbjct: 249 FFLPIVCGMLLAGIAVDNLIYKKIEDISMLMGEYFQIHDDYLDIFGDSTKTGKVGSDIQN 308
Query: 254 YKCSWLVVKALELCNEEQKKLVHENYGKVDPACVAKVKELYKTLDLEGAFVEYEKESYEK 313
K +W ++K ELC+E K + +NYGK + ACV + LY+ + + YEK K
Sbjct: 309 NKLTWPLIKTFELCSEPDKIKIVKNYGKNNLACVKVIDSLYEQYKIRKHYESYEKAQKAK 368
Query: 314 LTKSIEAHPTKEVQAVLKSFL 334
+ +I + ++ VLK L
Sbjct: 369 ILSAINELHHEGIEYVLKYLL 389
>pdb|3MAV|A Chain A, Crystal Structure Of Plasmodium Vivax Putative Farnesyl
Pyrophosphate Synthase (Pv092040)
pdb|3MAV|B Chain B, Crystal Structure Of Plasmodium Vivax Putative Farnesyl
Pyrophosphate Synthase (Pv092040)
pdb|3MAV|C Chain C, Crystal Structure Of Plasmodium Vivax Putative Farnesyl
Pyrophosphate Synthase (Pv092040)
pdb|3MAV|D Chain D, Crystal Structure Of Plasmodium Vivax Putative Farnesyl
Pyrophosphate Synthase (Pv092040)
Length = 395
Score = 202 bits (513), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 115/321 (35%), Positives = 180/321 (56%), Gaps = 27/321 (8%)
Query: 38 MLDYNVPGGKLNRGLSVVDSYRLLKEGKELTDDEFFLSSALGWCIEWLQAYFLVLDDIMD 97
+ DYN GGK NRG+ V+ Y +K +++ E+ ++ L WCIE LQA FLV DDIMD
Sbjct: 71 LFDYNCLGGKNNRGILVILIYEYVK-NRDINSSEWEKAACLAWCIEILQAAFLVADDIMD 129
Query: 98 GSHTRRGQPCWFRVPKVGM-IAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQ 156
RR + CW+ + V A ND +LL N I ++++ + R++ YVD++ F + +
Sbjct: 130 KGEMRRNKYCWYLLKDVETKNAVNDVLLLYNSIYKLIEIYLRNESCYVDVIATFRDATLK 189
Query: 157 TASGQMIDLITTIEGEK---------------------DLSKYSLPLHRRIVQYKTAYYS 195
T GQ +D T I +K D++ + +++ IV +KTAYYS
Sbjct: 190 TIIGQHLD--TNIFSDKYSDAHREIDVNNINVPEQPVIDINMINFGVYKNIVIHKTAYYS 247
Query: 196 FYLPVACALLMAGENLDKHV--EVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVGTDIED 253
F+LP+ C +L+AG +D + +++DI + MG YFQ+ DD+LD FG GKVG+DI++
Sbjct: 248 FFLPIVCGMLLAGIAVDNLIYKKIEDISMLMGEYFQIHDDYLDIFGDSTKTGKVGSDIQN 307
Query: 254 YKCSWLVVKALELCNEEQKKLVHENYGKVDPACVAKVKELYKTLDLEGAFVEYEKESYEK 313
K +W ++K ELC+E K + +NYGK + ACV + LY+ + + YEK K
Sbjct: 308 NKLTWPLIKTFELCSEPDKIKIVKNYGKNNLACVKVIDSLYEQYKIRKHYESYEKAQKAK 367
Query: 314 LTKSIEAHPTKEVQAVLKSFL 334
+ +I + ++ VLK L
Sbjct: 368 ILSAINELHHEGIEYVLKYLL 388
>pdb|2O1O|A Chain A, Cryptosporidium Parvum Putative Polyprenyl Pyrophosphate
Synthase (Cgd4_2550) In Complex With Risedronate.
pdb|2O1O|B Chain B, Cryptosporidium Parvum Putative Polyprenyl Pyrophosphate
Synthase (Cgd4_2550) In Complex With Risedronate.
pdb|2Q58|A Chain A, Cryptosporidium Parvum Putative Polyprenyl Pyrophosphate
Synthase (Cgd4_2550) In Complex With Zoledronate
pdb|2Q58|B Chain B, Cryptosporidium Parvum Putative Polyprenyl Pyrophosphate
Synthase (Cgd4_2550) In Complex With Zoledronate
Length = 368
Score = 112 bits (281), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 105/344 (30%), Positives = 156/344 (45%), Gaps = 48/344 (13%)
Query: 11 VYGVLKQELLNDPAFEFDHDSRQWVDRMLDYNVPGGKLNRGLSVVDSYRLLKEGKELTDD 70
VY VLK+ LND E ++ +DYNV GK RG +V L + D
Sbjct: 39 VYNVLKKLPLND---EIRKPVIEYYLNCIDYNVKKGKHIRGKILVLISSLSSAYSNIKRD 95
Query: 71 EFFLSSALGWCIEWLQAYFLVLDDIMDGSHTRRGQPCWFRVPKVGMIAANDGVLLRN--- 127
+L LGW +E +QA L+ DDIMD RRG PCW+ V A ND L+
Sbjct: 96 SIYL---LGWVVEAIQALILIADDIMDSGKFRRGAPCWYIVHGQSN-AINDIFFLKMLSL 151
Query: 128 ----HISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEGEKDLSKYSLPLH 183
+S + N K + ++NE F T GQ +DL DLSK
Sbjct: 152 SLIFELSSVFGNDIVMK-----IQKIYNESIFFTVLGQHLDL-----SYFDLSKADKISE 201
Query: 184 R--RIVQYKTAYYSFYLPVACALLM-------AGENLDKHVEVKDILVQMGIYFQVQDDF 234
R +V+ KT+ Y+FY+PV L + A NL ++ IL ++G ++QV +D
Sbjct: 202 RYFSMVEMKTSRYTFYMPVFFGLTLSEIQVSSAQLNL-----IEAILYKLGEFYQVHNDV 256
Query: 235 LD-CFGSPEVIGKVGTDIEDYKCSWLVVKALELCNEEQKKLVHENYGKVDPACVAKVKEL 293
D F DI +K +W + K+ E+ +EE K + ENYGK VK+
Sbjct: 257 SDYLFNDSN-----ADDICRFKLTWPLQKSFEIADEEMKLKISENYGKNSSL----VKDC 307
Query: 294 YKTLDLEGAFVEYEKESYEKLTKSIEAHPTKEVQAVLKSFLAKI 337
Y L + ++EY++ + + L K ++ +Q V + +I
Sbjct: 308 YNLLKINEHYLEYQRNALDYLIKLVKDITDDSLQKVFIHLIHQI 351
>pdb|1WMW|A Chain A, Crystal Structure Of Geranulgeranyl Diphosphate Synthase
From Thermus Thermophilus
pdb|1WMW|B Chain B, Crystal Structure Of Geranulgeranyl Diphosphate Synthase
From Thermus Thermophilus
pdb|1WMW|C Chain C, Crystal Structure Of Geranulgeranyl Diphosphate Synthase
From Thermus Thermophilus
pdb|1WMW|D Chain D, Crystal Structure Of Geranulgeranyl Diphosphate Synthase
From Thermus Thermophilus
Length = 330
Score = 89.0 bits (219), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 77/240 (32%), Positives = 117/240 (48%), Gaps = 15/240 (6%)
Query: 27 FDHDSRQWVDRMLDYNVPGGKLNRGLSVVDSYRLLKEGKELTDDEFFLSSALGWCIEWLQ 86
DH + D + DY GGK+ RGL V Y L G L E L +A +E Q
Sbjct: 20 LDHPDPLYRDLLQDYPRRGGKMLRGLLTV--YSALAHGAPL---EAGLEAAT--ALELFQ 72
Query: 87 AYFLVLDDIMDGSHTRRGQPCWFRVPKVGMIAANDGVLLRNHISRILKNHFRDKPYYVDL 146
+ LV DDI DGS RRG+P R+ + +A N G + + +L + ++
Sbjct: 73 NWVLVHDDIEDGSEERRGRPALHRLHPM-PLALNAGDAMHAEMWGLLAEGLARGLFPPEV 131
Query: 147 LDLFNEVEFQTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLM 206
L F+EV +TA GQ +DL+ T+ G DL + R+V +K AYY+ P+ L+
Sbjct: 132 LLEFHEVVRRTAYGQHLDLLWTLGGTFDLRPED---YFRMVAHKAAYYTAVAPLRLGALL 188
Query: 207 AGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGK-VGTDIEDYKCSWLVVKALE 265
AG+ E + ++G FQ+ DD L+ G E GK D+ + K + ++++ LE
Sbjct: 189 AGKTPPAAYEEGGL--RLGTAFQIVDDVLNLEGG-EAYGKERAGDLYEGKRTLILLRFLE 245
>pdb|3LK5|A Chain A, Crystal Structure Of Putative Geranylgeranyl Pyrophosphate
Synthase From Corynebacterium Glutamicum
pdb|3QQV|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Corynebacterium Glutamicum Complexed With Isoprenyl
Diphosphate And Magnesium
Length = 380
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 76/291 (26%), Positives = 131/291 (45%), Gaps = 42/291 (14%)
Query: 81 CIEWLQAYFLVLDDIMDGSHTRRGQPCWFRVPKVGMIAAN-DG----------VLLRNHI 129
+E++QA L+ DDI+D S TRRG P R + A N +G +L +
Sbjct: 96 SLEFIQACALIHDDIIDSSDTRRGAPTVHRAVEADHRANNFEGDPEHFGVSVSILAGDXA 155
Query: 130 SRILKNHFRDKPYYVDLL----DLFNEVEFQTASGQMIDLITTIEGEKDLSKYSLPLHRR 185
++ +D + L D + + GQ++D+ + + S+ L
Sbjct: 156 LVWAEDXLQDSGLSAEALARTRDAWRGXRTEVIGGQLLDIYL-----ESHANESVELADS 210
Query: 186 IVQYKTAYYSFYLPVACALLMAGENLDKHVEVKDILVQ----MGIYFQVQDDFLDCFGSP 241
+ ++KTA Y+ P+ +AG + ++ D L+ +GI FQ++DD L FG P
Sbjct: 211 VNRFKTAAYTIARPLHLGASIAGGS----PQLIDALLHYGHDIGIAFQLRDDLLGVFGDP 266
Query: 242 EVIGK-VGTDIEDYKCSWLVVKALELCNE---EQKKLVHENYGKV-DPACVAKVKELYKT 296
+ GK G DI + K + L+ AL+ ++ E + GKV P +A + E +
Sbjct: 267 AITGKPAGDDIREGKRTVLLALALQRADKQSPEAATAIRAGVGKVTSPEDIAVITEHIRA 326
Query: 297 LDLEGAFVEYEKESYEKLTKSIEAH-----PTKEVQAVLKSFLAKIYKRQK 342
GA E E+ +LT+S AH EV+A L++ + +R++
Sbjct: 327 T---GAEEEVEQR-ISQLTESGLAHLDDVDIPDEVRAQLRALAIRSTERRE 373
>pdb|1WY0|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate
Synthetase From Pyrococcus Horikoshii Ot3
Length = 342
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 67/269 (24%), Positives = 111/269 (41%), Gaps = 17/269 (6%)
Query: 16 KQELLNDPAFEF--DHDSRQWVDRMLDYNVPGGKLNRGLSVVDSYRLLKEGKELTDDEFF 73
K +L+++ FE + D R + Y + GGK R V+ S E +
Sbjct: 14 KAKLIDEKIFELIPEKDPRVLYEAARHYPLAGGKRVRPFVVLTST-------EAVGGDPL 66
Query: 74 LSSALGWCIEWLQAYFLVLDDIMDGSHTRRGQPCWFRVPKVGMIAANDGVLLRNHISRIL 133
+ IE + Y LV DDIMD TRRG+P R+ V M +L +
Sbjct: 67 RAIYPAVAIELIHNYSLVHDDIMDMDETRRGKPTVHRIWGVNMAILAGDLLFSKAFEAVA 126
Query: 134 KNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAY 193
+ + +L++ + + GQ DL E EK S ++ + ++ KT
Sbjct: 127 RAEIPPEK-KARVLEVIVKASNELCEGQARDL----EFEKK-STVTIEEYMEMISGKTGA 180
Query: 194 YSFYLPVACALLMAGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGK-VGTDIE 252
F ++ +N + + +GI FQ+ DD LD + +GK VG+DI
Sbjct: 181 L-FEASAKVGGIIGTDNEEYIKALSSWGRNVGIAFQIWDDVLDLIADEKKLGKPVGSDIR 239
Query: 253 DYKCSWLVVKALELCNEEQKKLVHENYGK 281
K + +V E +E+ K+ + +GK
Sbjct: 240 KGKKTLIVAHFFENADEKDKQRFLKIFGK 268
>pdb|3OYR|A Chain A, Crystal Structure Of Polyprenyl Synthase From Caulobacter
Crescentus Cb15 Complexed With Calcium And Isoprenyl
Diphosphate
pdb|3OYR|B Chain B, Crystal Structure Of Polyprenyl Synthase From Caulobacter
Crescentus Cb15 Complexed With Calcium And Isoprenyl
Diphosphate
Length = 345
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/241 (23%), Positives = 102/241 (42%), Gaps = 22/241 (9%)
Query: 43 VPGGKLNRGLSVVDSYRLLKEGKELTDDEFFLSSALGWCIEWLQAYFLVLDDIMDGSHTR 102
GGK R L V + RL D++ F L +E++ L+ DD++DGS R
Sbjct: 62 AAGGKRLRPLMTVAAARLAG-----ADNDHF--QKLAAAVEFIHTATLLHDDVVDGSQLR 114
Query: 103 RGQPCWFRV-PKVGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQ 161
RG+ + + D + R + N + L++ A G+
Sbjct: 115 RGKVAAHLIWGGAQSVLVGDFLFARAFELMVETNSMK-------ALEILARASRVIAEGE 167
Query: 162 MIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAGENLDKHVEVKDIL 221
++ L+ + DL+ S ++ I+Q KTA F + AG ++ K ++D
Sbjct: 168 VLQLMRS----HDLN-LSQAVYLEIIQAKTAEL-FAAASEAGAVSAGVDVAKSEALRDYG 221
Query: 222 VQMGIYFQVQDDFLDCFGSPEVIGK-VGTDIEDYKCSWLVVKALELCNEEQKKLVHENYG 280
+ +G+ FQ+ DD LD G+ E +GK G D + K + ++ A+ + + G
Sbjct: 222 LNLGLAFQLADDALDYGGATETLGKNAGDDFREGKATLPLLLAIARSGPREAEFWERAIG 281
Query: 281 K 281
+
Sbjct: 282 R 282
>pdb|4F62|A Chain A, Crystal Structure Of A Putative Farnesyl-Diphosphate
Synthase From Marinomonas Sp. Med121 (Target Efi-501980)
pdb|4F62|B Chain B, Crystal Structure Of A Putative Farnesyl-Diphosphate
Synthase From Marinomonas Sp. Med121 (Target Efi-501980)
Length = 317
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 63/247 (25%), Positives = 102/247 (41%), Gaps = 36/247 (14%)
Query: 33 QWVDRMLDYNVPGGKLNRGLSVVDSYRLLKEGK-----------ELTDDEFFLSSALGWC 81
Q++++ L P +L+ + Y L GK +L D L+ A
Sbjct: 18 QYLEQQLSDYAPANQLHNAMR----YSLFNGGKRIRPMLTYASAQLVGDISSLTDASAAA 73
Query: 82 IEWLQAYFLVLDDI--MDGSHTRRGQP-CWFRVPKVGMIAANDGVLLRNHISRILKNHFR 138
+E + AY L+ DD+ MD RRG+P C + + I A D L+ +L N
Sbjct: 74 LESIHAYSLIHDDLPAMDNDELRRGKPTCHIQFDEATAILAGDA--LQTFAFELLSNPTS 131
Query: 139 DKPYYVDLLDLFNEVEFQTA-----SGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAY 193
+P + L E+ + +GQMIDL + K++S L ++ +KT
Sbjct: 132 AQPELA--IKLIQELVVASGRNGMITGQMIDLSSE---NKNISLAEL---EQMHVHKTGA 183
Query: 194 YSFYLPVACALLMAGENLDKHVEVKDILVQ-MGIYFQVQDDFLDCFGSPEVIGKVG-TDI 251
V L G+ + + D +G+ FQVQDD +D E +GK +D
Sbjct: 184 L-IKASVRMGALSTGQVKPEQLAKLDAYAHAIGLAFQVQDDIIDLTSDTETLGKTQFSDA 242
Query: 252 EDYKCSW 258
E K ++
Sbjct: 243 EANKATY 249
>pdb|3MZV|A Chain A, Crystal Structure Of A Decaprenyl Diphosphate Synthase
From Rhodobacter Capsulatus
pdb|3MZV|B Chain B, Crystal Structure Of A Decaprenyl Diphosphate Synthase
From Rhodobacter Capsulatus
Length = 341
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 56/236 (23%), Positives = 104/236 (44%), Gaps = 34/236 (14%)
Query: 45 GGKLNRGLSVVDSYRLLKEGKELTDDEFFLSSALGWCIEWLQAYFLVLDDIMDGSHTRRG 104
GGK R + + + RL+ G F + L +E++ L+ DD++D S RRG
Sbjct: 52 GGKRLRPMLTLAAARLVGYGGP-----FHVH--LAATVEFIHTATLLHDDVVDESRQRRG 104
Query: 105 QPCWFRVPKVGMIAANDGVLLRNHISRILKNHFRDKPYY-------VDLLDLFNEVEFQT 157
+P AN +L N S ++ ++ + + + ++++
Sbjct: 105 RPT-----------AN--LLWDNKSSVLVGDYLFARSFQLMTDTGNMRVMEILANASAVI 151
Query: 158 ASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAGENLDKHVEV 217
A G+++ L ++L+ ++ R+++ KTA F ++ G D+ +
Sbjct: 152 AEGEVLQLTAA----QNLATTE-DIYLRVIRGKTAAL-FSAATEVGGIIGGAPEDQVQAL 205
Query: 218 KDILVQMGIYFQVQDDFLDCFGSPEVIGK-VGTDIEDYKCSWLVVKALELCNEEQK 272
D +GI FQ+ DD LD G IGK G D + K + V+KA+ L +E ++
Sbjct: 206 FDYGDALGIAFQIVDDLLDYGGKSAEIGKNTGDDFRERKLTMPVIKAVALADEAER 261
>pdb|1RTR|A Chain A, Crystal Structure Of S. Aureus Farnesyl Pyrophosphate
Synthase
pdb|1RTR|B Chain B, Crystal Structure Of S. Aureus Farnesyl Pyrophosphate
Synthase
Length = 301
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 90/199 (45%), Gaps = 18/199 (9%)
Query: 68 TDDEFFLSSALGWCIEWLQAYFLVLDDI--MDGSHTRRGQPCWFRV-PKVGMIAANDGVL 124
T+ E + SA+ +E + Y L+ DD+ MD RRG+ +V + I A D L
Sbjct: 59 TEYELGMKSAI--ALEMIHTYSLIHDDLPAMDNDDYRRGKLTNHKVYGEWTAILAGDA-L 115
Query: 125 LRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTA--SGQMIDLITTIEGEKDLSKYSLPL 182
L I + + +L + GQM+D+ + EG+ L
Sbjct: 116 LTKAFELISSDDRLTDEVKIKVLQRLSIASGHVGMVGGQMLDMQS--EGQP----IDLET 169
Query: 183 HRRIVQYKT-AYYSFYLPVACALLMAGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSP 241
I + KT A +F + A + + +H+E +G+ FQ++DD LDC+G
Sbjct: 170 LEMIHKTKTGALLTFAVMSAADIANVDDTTKEHLESYS--YHLGMMFQIKDDLLDCYGDE 227
Query: 242 EVIG-KVGTDIEDYKCSWL 259
+G KVG+D+E+ K +++
Sbjct: 228 AKLGKKVGSDLENNKSTYV 246
>pdb|1VG3|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima A76yS77F
MUTANT
Length = 299
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 92/189 (48%), Gaps = 24/189 (12%)
Query: 81 CIEWLQAYFLVLDDIMDGSHTRRGQPCW-FRVPKVGMIAANDGVLLR--NHISRILKNHF 137
+E + YFL+ DD++DG+ RRG+ F +AA D VL+ + + I N
Sbjct: 69 ALELVHLYFLLHDDVIDGARFRRGKETINFMYGDKAAVAAGDLVLVSAFHTVEEIGNNKL 128
Query: 138 RDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFY 197
R +++++ +E E LI + K ++K + RIV+ K+ F
Sbjct: 129 RRA--FLNVIGKMSEAE----------LIEQLSRYKPITKEE---YLRIVEGKSGAL-FG 172
Query: 198 LPVACALLMAGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVG-TDIEDYKC 256
L + L+ GE + ++ ++ V +G +Q+ DD +D F E IGK G D+++
Sbjct: 173 LALQLPALLEGELGE---DLYNLGVTIGTIYQMFDDIMD-FAGMEKIGKDGFLDLKNGVA 228
Query: 257 SWLVVKALE 265
S+ +V A+E
Sbjct: 229 SFPLVTAME 237
>pdb|3UCA|A Chain A, Crystal Structure Of Isoprenoid Synthase (Target
Efi-501974) From Clostridium Perfringens
pdb|3UCA|B Chain B, Crystal Structure Of Isoprenoid Synthase (Target
Efi-501974) From Clostridium Perfringens
Length = 324
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 63/245 (25%), Positives = 113/245 (46%), Gaps = 32/245 (13%)
Query: 45 GGKLNRGLSVVDSYRLLKEGKELTDDEFFLSSALGWCIEWLQAYFLVLDDI--MDGSHTR 102
GGK R + ++ SY + K +D + L+ A+ IE + Y L+ DD+ MD R
Sbjct: 73 GGKRIRPILMLLSYYIYK-----SDYKKILTPAM--AIEMIHTYSLIHDDLPCMDNDDLR 125
Query: 103 RGQPCWFRVPKVGMIAANDGVLLRNHISRILKNH-FRDKPYYVDLLDLFNEVEFQTA--S 159
RG+P +V IA G L N +IL ++ + + + +
Sbjct: 126 RGKPTNHKVFGEA-IAVLAGDALLNEAMKILVDYSLEEGKSALKATKIIADAAGSDGMIG 184
Query: 160 GQMIDLITTIEGEKDLSKYSLP-LHRRIVQYKTAYYSFYLPVACALLMAGENLDKHVE-- 216
GQ++D+I E ++++S L +H + KT + A +M+G L + E
Sbjct: 185 GQIVDIIN--EDKEEISLKELDYMHLK----KTG------ELIKASIMSGAVLAEASEGD 232
Query: 217 ---VKDILVQMGIYFQVQDDFLDCFGSPEVIGK-VGTDIEDYKCSWLVVKALELCNEEQK 272
++ ++G+ FQ++DD LD G+ + +GK V D E K +++ + LE C ++
Sbjct: 233 IKKLEGFGYKLGLAFQIKDDILDVVGNAKDLGKNVHKDQESNKNNYITIFGLEECKKKCV 292
Query: 273 KLVHE 277
+ E
Sbjct: 293 NITEE 297
>pdb|4DHD|A Chain A, Crystal Structure Of Isoprenoid Synthase A3msh1 (Target
Efi-501992) From Pyrobaculum Calidifontis
pdb|4GP1|A Chain A, Crystal Structure Of Isoprenoid Synthase A3msh1 (Target
Efi-501992) From Pyrobaculum Calidifontis Complexed With
Dmapp
pdb|4GP2|A Chain A, Crystal Structure Of Isoprenoid Synthase A3msh1 (Target
Efi-501992) From Pyrobaculum Calidifontis Complexed With
Dmapp And Magnesium
pdb|4GP2|B Chain B, Crystal Structure Of Isoprenoid Synthase A3msh1 (Target
Efi-501992) From Pyrobaculum Calidifontis Complexed With
Dmapp And Magnesium
Length = 358
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 54/231 (23%), Positives = 92/231 (39%), Gaps = 16/231 (6%)
Query: 81 CIEWLQAYFLVLDDIMDGSHTRRGQPCWFRVPKVGMIAANDGVLLRNHISRILKNHFRDK 140
+E + Y L+ DDI+D RRG P + N +L+ ++ D
Sbjct: 73 IVELIHNYSLIYDDIIDRGDVRRGLPTVRKA-----FGDNAAILVGIWYREAIEEAVLDT 127
Query: 141 PYYVDLLDLFNEVEFQTASGQMIDLITTIEGEKD-------LSKYSLPLHRRIVQYKTAY 193
P EV G+ +D++ G D + +L + ++V KT
Sbjct: 128 PKPTLFAKEVAEVIKAIDEGERLDILFEAAGRSDPYFVQARWREVTLDDYIKMVSLKTGA 187
Query: 194 YSFYLPVACALLMAGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGK-VGTDIE 252
+L ++ + + G+ FQ+ DD LD +G P+ GK +G DI+
Sbjct: 188 L-IAAAAKWGVLSVSDDRGLAEAAWNFGMAAGVAFQIIDDVLDIYGDPKKFGKEIGKDIK 246
Query: 253 DYKCSWLVVK-ALELCNEEQKKLVHENYGKVDPACVAKVKELYKTLDLEGA 302
++K VV AL E +++ + E + + A V+E LD GA
Sbjct: 247 EHKRGNAVVAVALSHLGEGERRRLLEILAR-EVVEEADVREAVALLDSVGA 296
>pdb|3P8R|A Chain A, Crystal Structure Of Polyprenyl Synthase From Vibrio
Cholerae
Length = 302
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 68/256 (26%), Positives = 103/256 (40%), Gaps = 41/256 (16%)
Query: 33 QWVDRMLDYNVP-----------GGKLNRGLSVVDSYRLLKEGKELTDDEFFLSSALGWC 81
QW++R+ +P GGK R V + ++L G EL+D + S+
Sbjct: 26 QWLNRIPFQTLPLIEAMRYGLLLGGKRARPYLVYITGQML--GCELSDLDTPASA----- 78
Query: 82 IEWLQAYFLVLDDI--MDGSHTRRGQP-CWFRVPKVGMIAANDGVLLRNHISRILKNHFR 138
+E + AY L+ DD+ MD RRG+P C + + I D L+ IL
Sbjct: 79 VECIHAYSLIHDDLPAMDDDELRRGKPTCHIQFDEATAILTGDA--LQTLAFTILAEGDL 136
Query: 139 DKPYYVDLLDLFNEV-EFQTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFY 197
+ + + E A G + + E L SL I + KT
Sbjct: 137 SAAGETQRVAMLQALAEASGAQGMCLGQALDLAAENRL--ISLEELETIHRNKTGAL-MR 193
Query: 198 LPVACALLMAGE-------NLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGKV-GT 249
+ L AGE +LD++ E +G+ FQVQDD LD E +GK G+
Sbjct: 194 CAIRLGALAAGEKGRAMLPHLDRYAEA------VGLAFQVQDDILDIISDTETLGKPQGS 247
Query: 250 DIEDYKCSWLVVKALE 265
D E K ++ + LE
Sbjct: 248 DQELNKSTYPALLGLE 263
>pdb|1V4K|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima S77f Mutant
Length = 299
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 91/189 (48%), Gaps = 24/189 (12%)
Query: 81 CIEWLQAYFLVLDDIMDGSHTRRGQPCW-FRVPKVGMIAANDGVLLR--NHISRILKNHF 137
+E + FL+ DD++DG+ RRG+ F +AA D VL+ + + I N
Sbjct: 69 ALELVHLAFLLHDDVIDGARFRRGKETINFMYGDKAAVAAGDLVLVSAFHTVEEIGNNKL 128
Query: 138 RDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFY 197
R +++++ +E E LI + K ++K + RIV+ K+ F
Sbjct: 129 RRA--FLNVIGKMSEAE----------LIEQLSRYKPITKEE---YLRIVEGKSGAL-FG 172
Query: 198 LPVACALLMAGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVG-TDIEDYKC 256
L + L+ GE + ++ ++ V +G +Q+ DD +D F E IGK G D+++
Sbjct: 173 LALQLPALLEGELGE---DLYNLGVTIGTIYQMFDDIMD-FAGMEKIGKDGFLDLKNGVA 228
Query: 257 SWLVVKALE 265
S+ +V A+E
Sbjct: 229 SFPLVTAME 237
>pdb|1VG2|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima A76y Mutant
Length = 299
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 91/189 (48%), Gaps = 24/189 (12%)
Query: 81 CIEWLQAYFLVLDDIMDGSHTRRGQPCW-FRVPKVGMIAANDGVLLR--NHISRILKNHF 137
+E + Y L+ DD++DG+ RRG+ F +AA D VL+ + + I N
Sbjct: 69 ALELVHLYSLLHDDVIDGARFRRGKETINFMYGDKAAVAAGDLVLVSAFHTVEEIGNNKL 128
Query: 138 RDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFY 197
R +++++ +E E LI + K ++K + RIV+ K+ F
Sbjct: 129 RRA--FLNVIGKMSEAE----------LIEQLSRYKPITKEE---YLRIVEGKSGAL-FG 172
Query: 198 LPVACALLMAGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVG-TDIEDYKC 256
L + L+ GE + ++ ++ V +G +Q+ DD +D F E IGK G D+++
Sbjct: 173 LALQLPALLEGELGE---DLYNLGVTIGTIYQMFDDIMD-FAGMEKIGKDGFLDLKNGVA 228
Query: 257 SWLVVKALE 265
S+ +V A+E
Sbjct: 229 SFPLVTAME 237
>pdb|2AZK|A Chain A, Crystal Structure For The Mutant W136e Of Sulfolobus
Solfataricus Hexaprenyl Pyrophosphate Synthase
pdb|2AZK|B Chain B, Crystal Structure For The Mutant W136e Of Sulfolobus
Solfataricus Hexaprenyl Pyrophosphate Synthase
Length = 289
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 59/229 (25%), Positives = 101/229 (44%), Gaps = 47/229 (20%)
Query: 26 EFDHDSRQWVDRMLDYNVPGGKLNRGLSVVD-SYRLLKEGKELTDD-EFFLSSALG---- 79
EF +++ +DR+++ + NR +VD S +LK+GK F + ALG
Sbjct: 13 EFWLEAKATIDRLIEQFLNS---NRDWDLVDISSYILKDGKRFRGTLNMFFTVALGGDIK 69
Query: 80 ------WCIEWLQAYFLVLDDIMDGSHTRRG-QPCWFRVPKVGMIAANDGVL-LRNHIS- 130
IE L + L LDDI+D TRRG + W ++ N V+ + N++
Sbjct: 70 DSYGGALAIEILHSASLALDDIVDLDATRRGDKAAW-------VVYGNRKVIFITNYLIP 122
Query: 131 ---RILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEGEKDLSKYSLPLHRRIV 187
RI++ + D D L+ E+E T+ G + D+ Y + R +
Sbjct: 123 TALRIIQTSYGD-----DALNTSIELEKDTSVGALRDM------------YDNSDYIRTI 165
Query: 188 QYKTAYYSFYLPVACALLMAGENLDKHVEVKDILVQMGIYFQVQDDFLD 236
+ KT S + A ++ + ++ D+ +GI +QV DDF+D
Sbjct: 166 ELKTG--SLFKLSTVLSAYASKHYNTKQQMLDVGKYLGIIYQVIDDFVD 212
>pdb|1WKZ|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima K41a Mutant
pdb|1WKZ|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima K41a Mutant
Length = 299
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 62/232 (26%), Positives = 109/232 (46%), Gaps = 31/232 (13%)
Query: 38 MLDYNVPGGKLNRGLSVVDSYRLLKEGKELTDDEFFLSSALGWCIEWLQAYFLVLDDIMD 97
M D + G L LS++ S++ G E+ +D +AL E + L+ DD++D
Sbjct: 33 MKDLPLYGAMLRVRLSIL-SFK--NRGVEIGEDAISSLAAL----ELVHLASLLHDDVID 85
Query: 98 GSHTRRGQPCW-FRVPKVGMIAANDGVLLR--NHISRILKNHFRDKPYYVDLLDLFNEVE 154
G+ RRG+ F +AA D VL+ + + I N R +++++ +E E
Sbjct: 86 GARFRRGKETINFMYGDKAAVAAGDLVLVSAFHTVEEIGNNKLRRA--FLNVIGKMSEAE 143
Query: 155 FQTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAGENLDKH 214
LI + K ++K + RIV+ K+ F L + L+ GE +
Sbjct: 144 ----------LIEQLSRYKPITKEE---YLRIVEGKSGAL-FGLALQLPALLEGELGE-- 187
Query: 215 VEVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVG-TDIEDYKCSWLVVKALE 265
++ ++ V +G +Q+ DD +D F E IGK G D+++ S+ +V A+E
Sbjct: 188 -DLYNLGVTIGTIYQMFDDIMD-FAGMEKIGKDGFLDLKNGVASFPLVTAME 237
>pdb|2FOR|A Chain A, Crystal Structure Of The Shigella Flexneri Farnesyl
Pyrophosphate Synthase Complex With An Isopentenyl
Pyrophosphate
pdb|2FOR|B Chain B, Crystal Structure Of The Shigella Flexneri Farnesyl
Pyrophosphate Synthase Complex With An Isopentenyl
Pyrophosphate
Length = 323
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 87/211 (41%), Gaps = 23/211 (10%)
Query: 77 ALGWCIEWLQAYFLV--LDDIMDGSHTRRGQP-CWFRVPKVGMIAANDGVLLRNHISRIL 133
A +E + AY L+ MD RRG P C + + I A D L+ IL
Sbjct: 92 APAAAVECIHAYSLIHDDLPAMDDDDLRRGLPTCHVKFGEANAILAGDA--LQTLAFSIL 149
Query: 134 KNHFRDKPYYVDLLDLFNEVEFQTA-----SGQMIDLITTIEGEKDLSKYSLPLH--RRI 186
+ + D + + +E+ + GQ +DL D +PL RI
Sbjct: 150 SDANMPEVSDRDRISMISELASASGIAGMCGGQALDL--------DAEGKHVPLDALERI 201
Query: 187 VQYKTAYYSFYLPVACALLMAGENLDKHVEVKDILVQ-MGIYFQVQDDFLDCFGSPEVIG 245
++KT V L AG+ + + V D + +G+ FQVQDD LD G +G
Sbjct: 202 HRHKTGAL-IRAAVRLGALSAGDKGRRALPVLDKYAESIGLAFQVQDDILDVVGDTATLG 260
Query: 246 K-VGTDIEDYKCSWLVVKALELCNEEQKKLV 275
K G D + K ++ + LE ++ + L+
Sbjct: 261 KRQGADQQLGKSTYPALLGLEQARKKARDLI 291
>pdb|1RQI|A Chain A, Active Conformation Of Farnesyl Pyrophosphate Synthase
Bound To Isopentyl Pyrophosphate And Dimethylallyl S-
Thiolodiphosphate
pdb|1RQI|B Chain B, Active Conformation Of Farnesyl Pyrophosphate Synthase
Bound To Isopentyl Pyrophosphate And Dimethylallyl S-
Thiolodiphosphate
Length = 300
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 59/213 (27%), Positives = 87/213 (40%), Gaps = 27/213 (12%)
Query: 77 ALGWCIEWLQAYFLV--LDDIMDGSHTRRGQP-CWFRVPKVGMIAANDGVLLRNHISRIL 133
A +E + AY L+ MD RRG P C + + I A D L+ IL
Sbjct: 69 APAAAVECIHAYSLIHDDLPAMDDDDLRRGLPTCHVKFGEANAILAGDA--LQTLAFSIL 126
Query: 134 KNHFRDKPYYVDLLDLFNEVEFQTASG-------QMIDLITTIEGEKDLSKYSLPLH--R 184
+ D P D + E +ASG Q +DL D +PL
Sbjct: 127 SDA--DMPEVSDRDRISMISELASASGIAGMCGGQALDL--------DAEGKHVPLDALE 176
Query: 185 RIVQYKTAYYSFYLPVACALLMAGENLDKHVEVKDILVQ-MGIYFQVQDDFLDCFGSPEV 243
RI ++KT V L AG+ + + V D + +G+ FQVQDD LD G
Sbjct: 177 RIHRHKTGAL-IRAAVRLGALSAGDKGRRALPVLDKYAESIGLAFQVQDDILDVVGDTAT 235
Query: 244 IGK-VGTDIEDYKCSWLVVKALELCNEEQKKLV 275
+GK G D + K ++ + LE ++ + L+
Sbjct: 236 LGKRQGADQQLGKSTYPALLGLEQARKKARDLI 268
>pdb|1RQJ|A Chain A, Active Conformation Of Farnesyl Pyrophosphate Synthase
Bound To Isopentyl Pyrophosphate And Risedronate
pdb|1RQJ|B Chain B, Active Conformation Of Farnesyl Pyrophosphate Synthase
Bound To Isopentyl Pyrophosphate And Risedronate
Length = 299
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 59/213 (27%), Positives = 87/213 (40%), Gaps = 27/213 (12%)
Query: 77 ALGWCIEWLQAYFLV--LDDIMDGSHTRRGQP-CWFRVPKVGMIAANDGVLLRNHISRIL 133
A +E + AY L+ MD RRG P C + + I A D L+ IL
Sbjct: 68 APAAAVECIHAYSLIHDDLPAMDDDDLRRGLPTCHVKFGEANAILAGDA--LQTLAFSIL 125
Query: 134 KNHFRDKPYYVDLLDLFNEVEFQTASG-------QMIDLITTIEGEKDLSKYSLPLH--R 184
+ D P D + E +ASG Q +DL D +PL
Sbjct: 126 SDA--DMPEVSDRDRISMISELASASGIAGMCGGQALDL--------DAEGKHVPLDALE 175
Query: 185 RIVQYKTAYYSFYLPVACALLMAGENLDKHVEVKDILVQ-MGIYFQVQDDFLDCFGSPEV 243
RI ++KT V L AG+ + + V D + +G+ FQVQDD LD G
Sbjct: 176 RIHRHKTGAL-IRAAVRLGALSAGDKGRRALPVLDKYAESIGLAFQVQDDILDVVGDTAT 234
Query: 244 IGK-VGTDIEDYKCSWLVVKALELCNEEQKKLV 275
+GK G D + K ++ + LE ++ + L+
Sbjct: 235 LGKRQGADQQLGKSTYPALLGLEQARKKARDLI 267
>pdb|2AZL|A Chain A, Crystal Structure For The Mutant F117e Of Thermotoga
Maritima Octaprenyl Pyrophosphate Synthase
Length = 299
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 90/189 (47%), Gaps = 24/189 (12%)
Query: 81 CIEWLQAYFLVLDDIMDGSHTRRGQPCW-FRVPKVGMIAANDGVLL--RNHISRILKNHF 137
+E + L+ DD++DG+ RRG+ F +AA D VL+ + + I N
Sbjct: 69 ALELVHLASLLHDDVIDGARFRRGKETINFMYGDKAAVAAGDLVLVSAEHTVEEIGNNKL 128
Query: 138 RDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFY 197
R +++++ +E E LI + K ++K + RIV+ K+ F
Sbjct: 129 RRA--FLNVIGKMSEAE----------LIEQLSRYKPITKEE---YLRIVEGKSGAL-FG 172
Query: 198 LPVACALLMAGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVG-TDIEDYKC 256
L + L+ GE + ++ ++ V +G +Q+ DD +D F E IGK G D+++
Sbjct: 173 LALQLPALLEGELGE---DLYNLGVTIGTIYQMFDDIMD-FAGMEKIGKDGFLDLKNGVA 228
Query: 257 SWLVVKALE 265
S+ +V A+E
Sbjct: 229 SFPLVTAME 237
>pdb|1V4E|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima
pdb|1V4E|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima
Length = 299
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 90/189 (47%), Gaps = 24/189 (12%)
Query: 81 CIEWLQAYFLVLDDIMDGSHTRRGQPCW-FRVPKVGMIAANDGVLLR--NHISRILKNHF 137
+E + L+ DD++DG+ RRG+ F +AA D VL+ + + I N
Sbjct: 69 ALELVHLASLLHDDVIDGARFRRGKETINFMYGDKAAVAAGDLVLVSAFHTVEEIGNNKL 128
Query: 138 RDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFY 197
R +++++ +E E LI + K ++K + RIV+ K+ F
Sbjct: 129 RRA--FLNVIGKMSEAE----------LIEQLSRYKPITKEE---YLRIVEGKSGAL-FG 172
Query: 198 LPVACALLMAGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVG-TDIEDYKC 256
L + L+ GE + ++ ++ V +G +Q+ DD +D F E IGK G D+++
Sbjct: 173 LALQLPALLEGELGE---DLYNLGVTIGTIYQMFDDIMD-FAGMEKIGKDGFLDLKNGVA 228
Query: 257 SWLVVKALE 265
S+ +V A+E
Sbjct: 229 SFPLVTAME 237
>pdb|1WL0|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima R44a Mutant
pdb|1WL0|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima R44a Mutant
Length = 299
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 90/189 (47%), Gaps = 24/189 (12%)
Query: 81 CIEWLQAYFLVLDDIMDGSHTRRGQPCW-FRVPKVGMIAANDGVLLR--NHISRILKNHF 137
+E + L+ DD++DG+ RRG+ F +AA D VL+ + + I N
Sbjct: 69 ALELVHLASLLHDDVIDGARFRRGKETINFMYGDKAAVAAGDLVLVSAFHTVEEIGNNKL 128
Query: 138 RDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFY 197
R +++++ +E E LI + K ++K + RIV+ K+ F
Sbjct: 129 RRA--FLNVIGKMSEAE----------LIEQLSRYKPITKEE---YLRIVEGKSGAL-FG 172
Query: 198 LPVACALLMAGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVG-TDIEDYKC 256
L + L+ GE + ++ ++ V +G +Q+ DD +D F E IGK G D+++
Sbjct: 173 LALQLPALLEGELGE---DLYNLGVTIGTIYQMFDDIMD-FAGMEKIGKDGFLDLKNGVA 228
Query: 257 SWLVVKALE 265
S+ +V A+E
Sbjct: 229 SFPLVTAME 237
>pdb|1V4H|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima F52a Mutant
Length = 299
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 90/189 (47%), Gaps = 24/189 (12%)
Query: 81 CIEWLQAYFLVLDDIMDGSHTRRGQPCW-FRVPKVGMIAANDGVLLR--NHISRILKNHF 137
+E + L+ DD++DG+ RRG+ F +AA D VL+ + + I N
Sbjct: 69 ALELVHLASLLHDDVIDGARFRRGKETINFMYGDKAAVAAGDLVLVSAFHTVEEIGNNKL 128
Query: 138 RDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFY 197
R +++++ +E E LI + K ++K + RIV+ K+ F
Sbjct: 129 RRA--FLNVIGKMSEAE----------LIEQLSRYKPITKEE---YLRIVEGKSGAL-FG 172
Query: 198 LPVACALLMAGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVG-TDIEDYKC 256
L + L+ GE + ++ ++ V +G +Q+ DD +D F E IGK G D+++
Sbjct: 173 LALQLPALLEGELGE---DLYNLGVTIGTIYQMFDDIMD-FAGMEKIGKDGFLDLKNGVA 228
Query: 257 SWLVVKALE 265
S+ +V A+E
Sbjct: 229 SFPLVTAME 237
>pdb|1V4I|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima F132a Mutant
Length = 299
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 89/193 (46%), Gaps = 32/193 (16%)
Query: 81 CIEWLQAYFLVLDDIMDGSHTRRGQPCW-FRVPKVGMIAANDGVLLR--NHISRILKNHF 137
+E + L+ DD++DG+ RRG+ F +AA D VL+ + + I N
Sbjct: 69 ALELVHLASLLHDDVIDGARFRRGKETINFMYGDKAAVAAGDLVLVSAFHTVEEIGNNKL 128
Query: 138 RDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEGEKDLSKYSLPLHR----RIVQYKTAY 193
R A+ +I ++ E + LS+Y P+ + RIV+ K+
Sbjct: 129 R------------------RAALNVIGKMSEAELIEQLSRYK-PITKEEYLRIVEGKSGA 169
Query: 194 YSFYLPVACALLMAGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVG-TDIE 252
F L + L+ GE + ++ ++ V +G +Q+ DD +D F E IGK G D++
Sbjct: 170 L-FGLALQLPALLEGELGE---DLYNLGVTIGTIYQMFDDIMD-FAGMEKIGKDGFLDLK 224
Query: 253 DYKCSWLVVKALE 265
+ S+ +V A+E
Sbjct: 225 NGVASFPLVTAME 237
>pdb|1V4J|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima V73y Mutant
pdb|1V4J|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima V73y Mutant
Length = 299
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 87/180 (48%), Gaps = 24/180 (13%)
Query: 90 LVLDDIMDGSHTRRGQPCW-FRVPKVGMIAANDGVLLR--NHISRILKNHFRDKPYYVDL 146
L+ DD++DG+ RRG+ F +AA D VL+ + + I N R ++++
Sbjct: 78 LLHDDVIDGARFRRGKETINFMYGDKAAVAAGDLVLVSAFHTVEEIGNNKLRRA--FLNV 135
Query: 147 LDLFNEVEFQTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLM 206
+ +E E LI + K ++K + RIV+ K+ F L + L+
Sbjct: 136 IGKMSEAE----------LIEQLSRYKPITKEE---YLRIVEGKSGAL-FGLALQLPALL 181
Query: 207 AGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVG-TDIEDYKCSWLVVKALE 265
GE + ++ ++ V +G +Q+ DD +D F E IGK G D+++ S+ +V A+E
Sbjct: 182 EGELGE---DLYNLGVTIGTIYQMFDDIMD-FAGMEKIGKDGFLDLKNGVASFPLVTAME 237
>pdb|1WL1|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima H74a Mutant
pdb|1WL1|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima H74a Mutant
Length = 299
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 85/177 (48%), Gaps = 24/177 (13%)
Query: 93 DDIMDGSHTRRGQPCW-FRVPKVGMIAANDGVLLR--NHISRILKNHFRDKPYYVDLLDL 149
DD++DG+ RRG+ F +AA D VL+ + + I N R +++++
Sbjct: 81 DDVIDGARFRRGKETINFMYGDKAAVAAGDLVLVSAFHTVEEIGNNKLRRA--FLNVIGK 138
Query: 150 FNEVEFQTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAGE 209
+E E LI + K ++K + RIV+ K+ F L + L+ GE
Sbjct: 139 MSEAE----------LIEQLSRYKPITKEE---YLRIVEGKSGAL-FGLALQLPALLEGE 184
Query: 210 NLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVG-TDIEDYKCSWLVVKALE 265
+ ++ ++ V +G +Q+ DD +D F E IGK G D+++ S+ +V A+E
Sbjct: 185 LGE---DLYNLGVTIGTIYQMFDDIMD-FAGMEKIGKDGFLDLKNGVASFPLVTAME 237
>pdb|1VG4|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima F132aL128A
MUTANT
pdb|1VG4|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima F132aL128A
MUTANT
Length = 299
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 89/193 (46%), Gaps = 32/193 (16%)
Query: 81 CIEWLQAYFLVLDDIMDGSHTRRGQPCW-FRVPKVGMIAANDGVLLR--NHISRILKNHF 137
+E + L+ DD++DG+ RRG+ F +AA D VL+ + + I N
Sbjct: 69 ALELVHLASLLHDDVIDGARFRRGKETINFMYGDKAAVAAGDLVLVSAFHTVEEIGNNKA 128
Query: 138 RDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEGEKDLSKYSLPLHR----RIVQYKTAY 193
R A+ +I ++ E + LS+Y P+ + RIV+ K+
Sbjct: 129 R------------------RAALNVIGKMSEAELIEQLSRYK-PITKEEYLRIVEGKSGA 169
Query: 194 YSFYLPVACALLMAGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVG-TDIE 252
F L + L+ GE + ++ ++ V +G +Q+ DD +D F E IGK G D++
Sbjct: 170 L-FGLALQLPALLEGELGE---DLYNLGVTIGTIYQMFDDIMD-FAGMEKIGKDGFLDLK 224
Query: 253 DYKCSWLVVKALE 265
+ S+ +V A+E
Sbjct: 225 NGVASFPLVTAME 237
>pdb|2DH4|A Chain A, Geranylgeranyl Pyrophosphate Synthase
pdb|2DH4|B Chain B, Geranylgeranyl Pyrophosphate Synthase
pdb|2E8T|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium, Fspp And Ipp
pdb|2E8T|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium, Fspp And Ipp
pdb|2E8U|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Ipp (P21)
pdb|2E8U|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Ipp (P21)
pdb|2E8V|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Product Ggpp (P21)
pdb|2E8V|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Product Ggpp (P21)
pdb|2E8W|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Ipp
pdb|2E8W|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Ipp
pdb|2E8X|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Gpp
pdb|2E8X|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Gpp
pdb|2E90|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium, Pyrophosphate And Fpp
pdb|2E90|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium, Pyrophosphate And Fpp
pdb|2E91|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-91
pdb|2E91|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-91
pdb|2E92|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-261
pdb|2E92|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-261
pdb|2E93|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Bph-629
pdb|2E93|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Bph-629
pdb|2E94|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-364
pdb|2E94|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-364
pdb|2E95|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-675
pdb|2E95|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-675
pdb|2Z7H|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Inhibitor Bph-210
pdb|2Z7H|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Inhibitor Bph-210
pdb|2Z4V|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Ggpp (Inhibitory Site)
pdb|2Z4V|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Ggpp (Inhibitory Site)
pdb|2Z4W|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-749
pdb|2Z4W|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-749
pdb|2Z4X|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-252 (P21)
pdb|2Z4X|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-252 (P21)
pdb|2Z4Y|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-252
pdb|2Z4Y|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-252
pdb|2Z4Z|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-Sc01
pdb|2Z4Z|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-Sc01
pdb|2Z50|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Bph-28
pdb|2Z50|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Bph-28
pdb|2Z52|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-23
pdb|2Z52|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-23
pdb|2Z78|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Bph-806
pdb|2Z78|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Bph-806
pdb|2Z7I|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Inhibitor Bph-742
pdb|2Z7I|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Inhibitor Bph-742
pdb|2ZEU|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Bph-715
pdb|2ZEU|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Bph-715
pdb|2ZEV|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp And Bph-715
pdb|2ZEV|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp And Bph-715
Length = 340
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 84/201 (41%), Gaps = 22/201 (10%)
Query: 76 SALGWCIEWLQAYFLVLDDIMDGSHTRRGQPC---WFRVPKVGMIAANDGVLLRNHISRI 132
+ + +E L L++DDI D + RRGQ F VP N + ++
Sbjct: 63 AIVSQIVELLHNSSLLIDDIEDNAPLRRGQTTSHLIFGVPS----TINTANYMYFRAMQL 118
Query: 133 LKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEGEKDLSKYSLP---LHRRIVQY 189
+ +P Y +L+ +FNE GQ +D+ +D +P ++ +V
Sbjct: 119 VSQLTTKEPLYHNLITIFNEELINLHRGQGLDIYW-----RDFLPEIIPTQEMYLNMVMN 173
Query: 190 KT-AYYSFYLPVACALLMAGENLDKHVEVKDILVQMGIYFQVQDDFLDC--FGSPEVIGK 246
KT + L + AL + + V ++L GI +Q++DD+L+ F G
Sbjct: 174 KTGGLFRLTLRLMEALSPSSHHGHSLVPFINLL---GIIYQIRDDYLNLKDFQMSSEKG- 229
Query: 247 VGTDIEDYKCSWLVVKALELC 267
DI + K S+ +V AL
Sbjct: 230 FAEDITEGKLSFPIVHALNFT 250
>pdb|1VG7|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima
F132aL128AI123AD62A MUTANT
Length = 299
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 88/187 (47%), Gaps = 20/187 (10%)
Query: 81 CIEWLQAYFLVLDDIMDGSHTRRGQPCW-FRVPKVGMIAANDGVLLRNHISRILKNHFRD 139
+E + L+ DD++DG+ RRG+ F +AA D VL+ + + +
Sbjct: 69 ALELVHLASLLHDDVIDGARFRRGKETINFMYGDKAAVAAGDLVLVSAFHTVEEAGNNKA 128
Query: 140 KPYYVDLLDLFNEVEFQTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLP 199
+ ++++ +E E LI + K ++K + RIV+ K+ F L
Sbjct: 129 RRAALNVIGKMSEAE----------LIEQLSRYKPITKEE---YLRIVEGKSGAL-FGLA 174
Query: 200 VACALLMAGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVG-TDIEDYKCSW 258
+ L+ GE + ++ ++ V +G +Q+ DD +D F E IGK G D+++ S+
Sbjct: 175 LQLPALLEGELGE---DLYNLGVTIGTIYQMFDDIMD-FAGMEKIGKDGFLDLKNGVASF 230
Query: 259 LVVKALE 265
+V A+E
Sbjct: 231 PLVTAME 237
>pdb|1VG6|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima
F132aL128AI123A MUTANT
Length = 299
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 88/187 (47%), Gaps = 20/187 (10%)
Query: 81 CIEWLQAYFLVLDDIMDGSHTRRGQPCW-FRVPKVGMIAANDGVLLRNHISRILKNHFRD 139
+E + L+ DD++DG+ RRG+ F +AA D VL+ + + +
Sbjct: 69 ALELVHLASLLHDDVIDGARFRRGKETINFMYGDKAAVAAGDLVLVSAFHTVEEAGNNKA 128
Query: 140 KPYYVDLLDLFNEVEFQTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLP 199
+ ++++ +E E LI + K ++K + RIV+ K+ F L
Sbjct: 129 RRAALNVIGKMSEAE----------LIEQLSRYKPITKEE---YLRIVEGKSGAL-FGLA 174
Query: 200 VACALLMAGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVG-TDIEDYKCSW 258
+ L+ GE + ++ ++ V +G +Q+ DD +D F E IGK G D+++ S+
Sbjct: 175 LQLPALLEGELGE---DLYNLGVTIGTIYQMFDDIMD-FAGMEKIGKDGFLDLKNGVASF 230
Query: 259 LVVKALE 265
+V A+E
Sbjct: 231 PLVTAME 237
>pdb|1WL2|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima R90a Mutant
Length = 299
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 89/189 (47%), Gaps = 24/189 (12%)
Query: 81 CIEWLQAYFLVLDDIMDGSHTRRGQPCW-FRVPKVGMIAANDGVLLR--NHISRILKNHF 137
+E + L+ DD++DG+ RG+ F +AA D VL+ + + I N
Sbjct: 69 ALELVHLASLLHDDVIDGARFARGKETINFMYGDKAAVAAGDLVLVSAFHTVEEIGNNKL 128
Query: 138 RDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFY 197
R +++++ +E E LI + K ++K + RIV+ K+ F
Sbjct: 129 RRA--FLNVIGKMSEAE----------LIEQLSRYKPITKEE---YLRIVEGKSGAL-FG 172
Query: 198 LPVACALLMAGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVG-TDIEDYKC 256
L + L+ GE + ++ ++ V +G +Q+ DD +D F E IGK G D+++
Sbjct: 173 LALQLPALLEGELGE---DLYNLGVTIGTIYQMFDDIMD-FAGMEKIGKDGFLDLKNGVA 228
Query: 257 SWLVVKALE 265
S+ +V A+E
Sbjct: 229 SFPLVTAME 237
>pdb|1WL3|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima R91a Mutant
pdb|1WL3|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima R91a Mutant
Length = 299
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 89/189 (47%), Gaps = 24/189 (12%)
Query: 81 CIEWLQAYFLVLDDIMDGSHTRRGQPCW-FRVPKVGMIAANDGVLLR--NHISRILKNHF 137
+E + L+ DD++DG+ R G+ F +AA D VL+ + + I N
Sbjct: 69 ALELVHLASLLHDDVIDGARFRAGKETINFMYGDKAAVAAGDLVLVSAFHTVEEIGNNKL 128
Query: 138 RDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFY 197
R +++++ +E E LI + K ++K + RIV+ K+ F
Sbjct: 129 RRA--FLNVIGKMSEAE----------LIEQLSRYKPITKEE---YLRIVEGKSGAL-FG 172
Query: 198 LPVACALLMAGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVG-TDIEDYKC 256
L + L+ GE + ++ ++ V +G +Q+ DD +D F E IGK G D+++
Sbjct: 173 LALQLPALLEGELGE---DLYNLGVTIGTIYQMFDDIMD-FAGMEKIGKDGFLDLKNGVA 228
Query: 257 SWLVVKALE 265
S+ +V A+E
Sbjct: 229 SFPLVTAME 237
>pdb|3RMG|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Bacteroides Thetaiotaomicron
pdb|3RMG|B Chain B, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Bacteroides Thetaiotaomicron
Length = 334
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 62/274 (22%), Positives = 120/274 (43%), Gaps = 34/274 (12%)
Query: 81 CIEWLQAYFLVLDDIMDGSHTRRGQPCWFRV--PKVGMIAANDGVLLRNHISRILKNHFR 138
+E L LV DD++D S RRGQ + KV ++A D +L + + N++
Sbjct: 75 SLELLHTASLVHDDVVDESTERRGQLSVNAIFNNKVSVLAG-DYLLATSLVHAEQTNNY- 132
Query: 139 DKPYYVDLLDLFNEVEFQTASGQMIDLITTIEGEKDLSKYSLP--LHRRIVQYKTAYYSF 196
+++ L + + + A G+++ L ++S +S ++ +++ KTA
Sbjct: 133 ------EIIRLVSSLGQKLAEGELLQL-------SNVSNHSFSEEVYFDVIRKKTAALFA 179
Query: 197 YLPVACAL-LMAGENLDKHVEVKDILVQ-MGIYFQVQDDFLDCFGSPEVIGKVGTDIEDY 254
A AL + GE + V +L + +GI FQ++DD D F S ++ G D+ +
Sbjct: 180 ACAEAAALSVQVGE---EEVAFARLLGEYIGICFQIKDDIFDYFDSKKIGKPTGNDMLEG 236
Query: 255 KCSWLVVKALELCNE--EQKKLVHENYGKVDPACVAKVKELYKTLDLEGAFVEYEKESYE 312
K + + AL + ++ G P + ++ E K + +EY + E
Sbjct: 237 KLTLPALYALNTTKDAWAEQIAFKVKEGTATPDEIVRLIEFTK----DNGGIEYACRTIE 292
Query: 313 KLTKS----IEAHPTKEVQAVLKSFLAKIYKRQK 342
+ K + A P + L+++L + R+K
Sbjct: 293 QYKKKAFDLLAALPDSNICLALRTYLDYVVAREK 326
>pdb|3LMD|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Corynebacterium Glutamicum Atcc 13032
pdb|3Q2Q|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Corynebacterium Glutamicum Complexed With Calcium
And Isoprenyl Diphosphate
Length = 360
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 81/192 (42%), Gaps = 29/192 (15%)
Query: 81 CIEWLQAYFLVLDDIMDGSHTRRGQPC----WFRVPKVGMIAANDGVLLRNHISRILKNH 136
+E L DD+MD + RRG P W V ++A G +L H S ++
Sbjct: 103 VVEITHLATLYHDDVMDEASMRRGVPSANARWDN--SVAILA---GDILLAHASGLMSQ- 156
Query: 137 FRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYY-- 194
D + F E + +GQM + + G +D + + +++ KT
Sbjct: 157 -----LGTDTVAHFAETFGELVTGQMRETV----GPRDTDP--IEHYTNVIREKTGVLIA 205
Query: 195 -SFYLPVACALLMAGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGKV-GTDIE 252
+ YL A A E++D +K+ +G+ FQ+ DD +D F GK GTD+
Sbjct: 206 SAGYLGAMHAG-AAPEHIDA---LKNFGAAVGMIFQIVDDIIDIFSETHESGKTPGTDLR 261
Query: 253 DYKCSWLVVKAL 264
+ + V+ AL
Sbjct: 262 EGVFTLPVLYAL 273
>pdb|2FTZ|A Chain A, Crystal Structure Of Geranyltranstransferase (Ec 2.5.1.10)
(Tm0161) From Thermotoga Maritima At 1.90 A Resolution
Length = 284
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 75/178 (42%), Gaps = 23/178 (12%)
Query: 81 CIEWLQAYFLVLDDI--MDGSHTRRGQPCWFRVPKVGM-IAANDGV--LLRNHISRILKN 135
+E L+ DD+ +D + RRG P R + + A DG+ L + IS I +
Sbjct: 74 AVELFHTASLIHDDLPPIDNADFRRGXPSCHRTYGEDIALLAGDGLFFLAFSQISXIGNS 133
Query: 136 HFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYS 195
++ F+E + G+ +D +E E+ + S + R+ + T
Sbjct: 134 XIFEE---------FSETAYXLLLGEAMD----VEFERRXMEVSQEMVERMYAFXTGAL- 179
Query: 196 FYLPVACALLMAGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGK-VGTDIE 252
F + ++ G + H + + G+ FQ+ DD D GS E +GK +G D E
Sbjct: 180 FAFCFSAPFILXGXD---HTXMXLLGEXFGVAFQIYDDLXDILGSFEKVGKDLGKDTE 234
>pdb|2AZJ|A Chain A, Crystal Structure For The Mutant D81c Of Sulfolobus
Solfataricus Hexaprenyl Pyrophosphate Synthase
pdb|2AZJ|B Chain B, Crystal Structure For The Mutant D81c Of Sulfolobus
Solfataricus Hexaprenyl Pyrophosphate Synthase
Length = 289
Score = 36.2 bits (82), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 57/229 (24%), Positives = 99/229 (43%), Gaps = 47/229 (20%)
Query: 26 EFDHDSRQWVDRMLDYNVPGGKLNRGLSVVD-SYRLLKEGKELTDD-EFFLSSALG---- 79
EF +++ +DR+++ + NR +VD S +LK+GK F + ALG
Sbjct: 13 EFWLEAKATIDRLIEQFLNS---NRDWDLVDISSYILKDGKRFRGTLNMFFTVALGGDIK 69
Query: 80 ------WCIEWLQAYFLVLDDIMDGSHTRRG-QPCWFRVPKVGMIAANDGVL-LRNHIS- 130
IE L + L L DI+D TRRG + W ++ N V+ + N++
Sbjct: 70 DSYGGALAIEILHSASLALCDIVDLDATRRGDKAAW-------VVYGNRKVIFITNYLIP 122
Query: 131 ---RILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEGEKDLSKYSLPLHRRIV 187
RI++ + D D L+ E+ T+ G + D+ Y + R +
Sbjct: 123 TALRIIQTSYGD-----DALNTSIELWKDTSVGALRDM------------YDNSDYIRTI 165
Query: 188 QYKTAYYSFYLPVACALLMAGENLDKHVEVKDILVQMGIYFQVQDDFLD 236
+ KT S + A ++ + ++ D+ +GI +QV DDF+D
Sbjct: 166 ELKTG--SLFKLSTVLSAYASKHYNTKQQMLDVGKYLGIIYQVIDDFVD 212
>pdb|3TC1|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Helicobacter Pylori
pdb|3TC1|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Helicobacter Pylori
Length = 315
Score = 35.4 bits (80), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 78/187 (41%), Gaps = 34/187 (18%)
Query: 70 DEFFLSSALGWC--IEWLQAYFLVLDDIMDGSHTRRGQPCWFRVPKVGMIAANDGVLLRN 127
D L AL C +E +Q L+ DD++D + RR ++P + L N
Sbjct: 52 DAILLDKALNLCTIVEMIQTASLLHDDVIDKATMRR------KLPSIN-------ALFGN 98
Query: 128 HISRILKNHFRDKPYYVDLLDLFNEVEFQTAS--------GQMIDLITTIEGEKDLSKYS 179
+ +L + F K ++ L E+ Q S G++ D+ D KY
Sbjct: 99 FNAVMLGDVFYSKAFFE--LSKMGELIAQALSNAVLRLSRGEIEDVFVGECFNSDKQKY- 155
Query: 180 LPLHRRIVQYKTAYYSFYLPVACALLMAGENLDKHVEVKDILVQMGIYFQVQDDFLDCFG 239
RI++ KTA++ + A+L+ N D + D + G+ FQ+ DD LD
Sbjct: 156 ----WRILEDKTAHFIEASLKSMAILL---NKDAKI-YADFGLNFGMAFQIIDDLLDITQ 207
Query: 240 SPEVIGK 246
+ +GK
Sbjct: 208 DAKTLGK 214
>pdb|3APZ|A Chain A, Apo Form Of Arabidopsis MediumLONG-Chain Length Prenyl
Pyrophosphate Synthase
pdb|3APZ|B Chain B, Apo Form Of Arabidopsis MediumLONG-Chain Length Prenyl
Pyrophosphate Synthase
Length = 348
Score = 35.4 bits (80), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 50/211 (23%), Positives = 85/211 (40%), Gaps = 30/211 (14%)
Query: 39 LDYNVPGGKLNRGLSVVDS-YRLLKEGKELTDDEFFLSSALGWCIEWLQAYFLVLDDIMD 97
LD VP + +V S R+ + G + E + L+ DD++D
Sbjct: 65 LDVRVPEALIGESTDIVTSELRVRQRG-------------IAEITEMIHVASLLHDDVLD 111
Query: 98 GSHTRRGQPCWFRVPKVGM-IAANDGVLLRN-HISRILKNHFRDKPYYVDLLDLFNEVEF 155
+ TRRG V M + A D +L R LKN +++ L
Sbjct: 112 DADTRRGVGSLNVVMGNKMSVLAGDFLLSRACGALAALKN--------TEVVALLATAVE 163
Query: 156 QTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAGENLDKHV 215
+G+ +++ ++ E +YS+ + + YKTA A A+L G+ + V
Sbjct: 164 HLVTGETMEITSSTE-----QRYSMDYYMQKTYYKTASLISNSCKAVAVL-TGQTAEVAV 217
Query: 216 EVKDILVQMGIYFQVQDDFLDCFGSPEVIGK 246
+ +G+ FQ+ DD LD G+ +GK
Sbjct: 218 LAFEYGRNLGLAFQLIDDILDFTGTSASLGK 248
>pdb|3M0G|A Chain A, Crystal Structure Of Putative Farnesyl Diphosphate
Synthase From Rhodobacter Capsulatus
pdb|3M0G|B Chain B, Crystal Structure Of Putative Farnesyl Diphosphate
Synthase From Rhodobacter Capsulatus
Length = 297
Score = 35.0 bits (79), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 222 VQMGIYFQVQDDFLDCFGSPEVIGK-VGTDIEDYKCSWL 259
+G+ FQ+ DD LD G+ E GK +G D E +K +++
Sbjct: 206 TALGLAFQIADDILDVEGNEEAAGKRLGKDAEAHKATFV 244
>pdb|3AQB|B Chain B, M. Luteus B-P 26 Heterodimeric Hexaprenyl Diphosphate
Synthase In Complex With Magnesium
pdb|3AQB|D Chain D, M. Luteus B-P 26 Heterodimeric Hexaprenyl Diphosphate
Synthase In Complex With Magnesium
pdb|3AQC|B Chain B, M. Luteus B-P 26 Heterodimeric Hexaprenyl Diphosphate
Synthase In Complex With Magnesium And Fpp Analogue
pdb|3AQC|D Chain D, M. Luteus B-P 26 Heterodimeric Hexaprenyl Diphosphate
Synthase In Complex With Magnesium And Fpp Analogue
Length = 325
Score = 35.0 bits (79), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 44/199 (22%), Positives = 81/199 (40%), Gaps = 29/199 (14%)
Query: 81 CIEWLQAYFLVLDDIMDGSHTRRGQPCWFRVPKVGMIAANDGVLLRNH--ISRILKNHFR 138
+E + LV DD +D S RRG V + D + H ++R L+N
Sbjct: 72 SLELVHMASLVHDDYIDNSDMRRGNTS------VHIAFDKDTAIRTGHFLLARALQN--- 122
Query: 139 DKPYYVDLLDLFNEVEFQTASGQMIDLITTIEGEKDLSKYSLPL----HRRIVQYKTAYY 194
+ N +F + I + E ++ +++ P+ + R + KTA
Sbjct: 123 --------IATINNSKFHQIFSKTILEVCFGEFDQMADRFNYPVSFTAYLRRINRKTA-- 172
Query: 195 SFYLPVACALLMAGENLDKHV--EVKDILVQMGIYFQVQDDFLDCFGSPEVIGK-VGTDI 251
+ +C L LD+ +K +G+ +Q+ DD LD +GK VG+DI
Sbjct: 173 -ILIEASCHLGALSSQLDEQSTYHIKQFGHCIGMSYQIIDDILDYTSDEATLGKPVGSDI 231
Query: 252 EDYKCSWLVVKALELCNEE 270
+ ++ ++ A+ E+
Sbjct: 232 RNGHITYPLMAAIANLKEQ 250
>pdb|3LVS|A Chain A, Crystal Structure Of Farnesyl Diphosphate Synthase From
Rhodobacter Capsulatus Sb1003
pdb|3LVS|B Chain B, Crystal Structure Of Farnesyl Diphosphate Synthase From
Rhodobacter Capsulatus Sb1003
Length = 298
Score = 34.7 bits (78), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 222 VQMGIYFQVQDDFLDCFGSPEVIGK-VGTDIEDYKCSWLVVKAL 264
+G+ FQ+ DD LD G+ E GK +G D E +K +++ + L
Sbjct: 207 TALGLAFQIADDILDVEGNEEAAGKRLGKDAEAHKATFVSLLGL 250
>pdb|3LOM|A Chain A, Crystal Structure Of Geranyltransferase From Legionella
Pneumophila
pdb|3LOM|B Chain B, Crystal Structure Of Geranyltransferase From Legionella
Pneumophila
Length = 313
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 76/185 (41%), Gaps = 31/185 (16%)
Query: 78 LGWCIEWLQAYFLVLDDI--MDGSHTRRGQP-CWFRVPKVGMIAANDGV------LLRNH 128
+ +E Y L+ DD+ MD RRG+P C + I DG+ +L
Sbjct: 75 IAAALELTHCYSLIHDDLPAMDNDDLRRGKPSCHKAFDEATAILVGDGMQALAIEVLLMR 134
Query: 129 ISRILKNHFRDKPYYVDLLDLFNEVEFQ-TASGQMIDLITTIEGEKDLSKYSLPLH--RR 185
+S +L V L N SGQ +DL +L+K S+ R
Sbjct: 135 LSPLLPAAQVVAITQV----LVNASGISGMVSGQSLDL-------SELAKSSVTEEQLRE 183
Query: 186 IVQYKTAYYSFYLPVACALLMAGENLDKHVEVKDILV----QMGIYFQVQDDFLDCFGSP 241
I KT L +AC ++ + ++K L +G+ FQ+QDD+LD +
Sbjct: 184 IHLLKTGK----LILACFEMVLAAQHEVSEQIKSALRTYGKHIGLVFQMQDDYLDLYAPT 239
Query: 242 EVIGK 246
+++GK
Sbjct: 240 QILGK 244
>pdb|2Q80|A Chain A, Crystal Structure Of Human Geranylgeranyl Pyrophosphate
Synthase Bound To Ggpp
pdb|2Q80|B Chain B, Crystal Structure Of Human Geranylgeranyl Pyrophosphate
Synthase Bound To Ggpp
pdb|2Q80|C Chain C, Crystal Structure Of Human Geranylgeranyl Pyrophosphate
Synthase Bound To Ggpp
pdb|2Q80|D Chain D, Crystal Structure Of Human Geranylgeranyl Pyrophosphate
Synthase Bound To Ggpp
pdb|2Q80|E Chain E, Crystal Structure Of Human Geranylgeranyl Pyrophosphate
Synthase Bound To Ggpp
pdb|2Q80|F Chain F, Crystal Structure Of Human Geranylgeranyl Pyrophosphate
Synthase Bound To Ggpp
Length = 301
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 67/157 (42%), Gaps = 21/157 (13%)
Query: 83 EWLQAYFLVLDDIMDGSHTRRGQPCWFRVPKVGMIAANDGVLLRNHISRILKNHFRDKPY 142
E L L++DDI D S RRG P + + + + + + ++L D P
Sbjct: 55 EMLHNASLLIDDIEDNSKLRRGFPVAHSIYGIPSVINSANYVYFLGLEKVLT---LDHP- 110
Query: 143 YVDLLDLFNEVEFQTASGQMIDLITTIEGEKDLSKYSLPL---HRRIVQYKTAYYSFYLP 199
D + LF + GQ +D+ Y+ P ++ +V KT F L
Sbjct: 111 --DAVKLFTRQLLELHQGQGLDIYWR-------DNYTCPTEEEYKAMVLQKTGGL-FGLA 160
Query: 200 VACALLMAGENLDKHVEVKDILVQMGIYFQVQDDFLD 236
V L + D ++K +L +G++FQ++DD+ +
Sbjct: 161 VGLMQLFS----DYKEDLKPLLNTLGLFFQIRDDYAN 193
>pdb|3AQ0|A Chain A, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
pdb|3AQ0|B Chain B, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
pdb|3AQ0|C Chain C, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
pdb|3AQ0|D Chain D, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
pdb|3AQ0|E Chain E, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
pdb|3AQ0|F Chain F, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
pdb|3AQ0|G Chain G, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
pdb|3AQ0|H Chain H, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
Length = 348
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 49/211 (23%), Positives = 85/211 (40%), Gaps = 30/211 (14%)
Query: 39 LDYNVPGGKLNRGLSVVDS-YRLLKEGKELTDDEFFLSSALGWCIEWLQAYFLVLDDIMD 97
LD VP + +V S R+ + G + E + L+ DD++D
Sbjct: 65 LDVRVPEALIGESTDIVTSELRVRQRG-------------IAEITEMIHVASLLHDDVLD 111
Query: 98 GSHTRRGQPCWFRVPKVGM-IAANDGVLLRN-HISRILKNHFRDKPYYVDLLDLFNEVEF 155
+ TRRG V M + A D +L R LKN +++ L
Sbjct: 112 DADTRRGVGSLNVVMGNKMSVLAGDFLLSRACGALAALKN--------TEVVALLATAVE 163
Query: 156 QTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAGENLDKHV 215
+G+ +++ ++ ++YS+ + + YKTA A A+L G+ + V
Sbjct: 164 HLVTGETMEITSSTA-----ARYSMDYYMQKTYYKTASLISNSCKAVAVL-TGQTAEVAV 217
Query: 216 EVKDILVQMGIYFQVQDDFLDCFGSPEVIGK 246
+ +G+ FQ+ DD LD G+ +GK
Sbjct: 218 LAFEYGRNLGLAFQLIDDILDFTGTSASLGK 248
>pdb|3NPK|A Chain A, The Crystal Structure Of Geranyltranstransferase From
Campylobacter Jejuni
pdb|3NPK|B Chain B, The Crystal Structure Of Geranyltranstransferase From
Campylobacter Jejuni
Length = 291
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 67/250 (26%), Positives = 108/250 (43%), Gaps = 45/250 (18%)
Query: 45 GGKLNRG---LSVVDSYRLLKEGKELTDDEFFLSSALGWCIEWLQAYFLVLDDI--MDGS 99
GGK R LSVV S + EL + ++ AL E++ Y L+ DD+ D +
Sbjct: 38 GGKHFRAQLLLSVVQSNK-----PELLNQALDVALAL----EFIHTYSLIHDDLPAXDNA 88
Query: 100 HTRRGQPCWFR------VPKVGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDL-FNE 152
RRG P + VG + L+ +H H +D+ + L FN
Sbjct: 89 DFRRGIPTLHKSYDETTAILVGDALNTEAFLVLSHA------HLKDEIKIKLIKTLAFNA 142
Query: 153 VEFQTASGQMIDLITTIEGEKDLSKYSLP-LHRRIVQYKTAYYSFYLPVACALLMAGE-- 209
GQ ID +K LS L LH +KTA +A AL E
Sbjct: 143 GLNGXVIGQAIDCFFE---DKRLSLNELEFLHT----HKTARL-----IAAALKXGCEIC 190
Query: 210 --NLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVGTDIEDYKCSWLVVKALELC 267
N ++ ++ + +++G+ FQ+ DD +D S E GK T+ + +K S++ + LE
Sbjct: 191 ELNNEESNQIYKLGLKLGLIFQINDDIIDVTTSQEQSGK-PTNNDIHKNSFVNLLGLEQA 249
Query: 268 NEEQKKLVHE 277
+ ++ L++E
Sbjct: 250 IKTKENLLNE 259
>pdb|3KRA|A Chain A, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium
pdb|3KRA|D Chain D, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium
pdb|3KRC|A Chain A, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Ipp
pdb|3KRC|D Chain D, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Ipp
pdb|3KRF|A Chain A, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp, And Dmaspp (I)
pdb|3KRF|D Chain D, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp, And Dmaspp (I)
pdb|3KRO|A Chain A, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp, And Dmaspp (Ii)
pdb|3KRO|D Chain D, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp, And Dmaspp (Ii)
pdb|3KRP|A Chain A, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium And Gpp
pdb|3KRP|D Chain D, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium And Gpp
pdb|3OAB|A Chain A, Mint Deletion Mutant Of Heterotetrameric Geranyl
Pyrophosphate Synthase In Complex With Ligands
pdb|3OAB|D Chain D, Mint Deletion Mutant Of Heterotetrameric Geranyl
Pyrophosphate Synthase In Complex With Ligands
pdb|3OAC|A Chain A, Mint Deletion Mutant Of Heterotetrameric Geranyl
Pyrophosphate Synthase In Complex With Ligands
pdb|3OAC|D Chain D, Mint Deletion Mutant Of Heterotetrameric Geranyl
Pyrophosphate Synthase In Complex With Ligands
Length = 295
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 56/257 (21%), Positives = 100/257 (38%), Gaps = 41/257 (15%)
Query: 58 YRLLKEGK-----------ELTDDEFFLSSALGWCIEWLQAYFLVLDDI--MDGSHTRRG 104
Y LL GK EL + + +E + L+ DD+ MD RRG
Sbjct: 37 YSLLAGGKRVRPMLCIAACELVGGDESTAMPAACAVEMIHTMSLMHDDLPCMDNDDLRRG 96
Query: 105 QPC-WFRVPKVGMIAANDGVL--LRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTAS-- 159
+P + + A D +L H++ K ++ ++ + E+ S
Sbjct: 97 KPTNHMAFGESVAVLAGDALLSFAFEHVAAATKGAPPER-----IVRVLGELAVSIGSEG 151
Query: 160 ---GQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAGENLDKHVE 216
GQ++D+ + E L I +KTA V ++ G ++ +
Sbjct: 152 LVAGQVVDVCSEGMAEVGLDHLEF-----IHHHKTAAL-LQGSVVLGAILGGGKEEEVAK 205
Query: 217 VKDILVQMGIYFQVQDDFLDCFGSPEVIGKV-GTDIEDYKCSWLVVKALE--------LC 267
++ +G+ FQV DD LD S + +GK G D+ K ++ + +E L
Sbjct: 206 LRKFANCIGLLFQVVDDILDVTKSSKELGKTAGKDLVADKTTYPKLIGVEKSKEFADRLN 265
Query: 268 NEEQKKLVHENYGKVDP 284
E Q++L+H + + P
Sbjct: 266 REAQEQLLHFHPHRAAP 282
>pdb|3P8L|A Chain A, Crystal Structure Of Polyprenyl Synthase From Enterococcus
Faecalis V583
pdb|3P8L|B Chain B, Crystal Structure Of Polyprenyl Synthase From Enterococcus
Faecalis V583
Length = 302
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 60/224 (26%), Positives = 94/224 (41%), Gaps = 27/224 (12%)
Query: 44 PGGKLNRGLSVVDSYRLLKEGKELTDDEFFLSSALGWCIEWLQAYFLV--LDDIMDGSHT 101
GGK R L V+ + + KE+ ++ ++++L E + Y L+ MD
Sbjct: 48 AGGKRLRPLLVLTTVAAFQ--KEMETQDYQVAASL----EMIHTYSLIHDDLPAMDDDDL 101
Query: 102 RRGQPCWFRV-PKVGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQ-TAS 159
RRG+P +V + I A DG LL + + + + L Q S
Sbjct: 102 RRGKPTNHKVFGEATAILAGDG-LLTGAFQLLSLSQLGLSEKVLLMQQLAKAAGNQGMVS 160
Query: 160 GQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAGENLDKHVEVKD 219
GQM D IEGEK SL L ++ + + AL+ G ++ EV
Sbjct: 161 GQMGD----IEGEK----VSLTLEELAAVHEKKTGAL---IEFALIAGGVLANQTEEVIG 209
Query: 220 ILVQM----GIYFQVQDDFLDCFGSPEVIG-KVGTDIEDYKCSW 258
+L Q G+ FQ++DD LD + +G KVG D K ++
Sbjct: 210 LLTQFAHHYGLAFQIRDDLLDATSTEADLGKKVGRDEALNKSTY 253
>pdb|2J1P|A Chain A, Geranylgeranyl Diphosphate Synthase From Sinapis Alba In
Complex With Ggpp
pdb|2J1P|B Chain B, Geranylgeranyl Diphosphate Synthase From Sinapis Alba In
Complex With Ggpp
Length = 293
Score = 32.3 bits (72), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 56/224 (25%), Positives = 94/224 (41%), Gaps = 32/224 (14%)
Query: 35 VDRMLDYNVPGGKLNRGLSVVDS--YRLLKEGK-----------ELTDDEFFLSSALGWC 81
V++ LD VP L L + ++ Y LL GK EL E L+
Sbjct: 24 VNKALDSAVP---LREPLKIHEAXRYSLLAGGKRVRPVLCIAACELVGGEESLAXPAACA 80
Query: 82 IEWLQAYFLVLDDI--MDGSHTRRGQPCWFRV--PKVGMIAANDGVLLR---NHISRILK 134
+E + L+ DD+ D RRG+P +V V ++A + LL H++
Sbjct: 81 VEXIHTXSLIHDDLPCXDNDDLRRGKPTNHKVYGEDVAVLAGD--ALLSFAFEHLASATS 138
Query: 135 NHFRDKPYYVDLLDLFNEVEFQT-ASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAY 193
+ + +L + + +GQ++D+ + EG DL+ L + I +KTA
Sbjct: 139 SEVSPARVVRAVGELAKAIGTEGLVAGQVVDISS--EG-LDLNNVGLEHLKFIHLHKTAA 195
Query: 194 YSFYLPVACALLMAGENLDKHVE-VKDILVQMGIYFQVQDDFLD 236
V ++ G D+ +E ++ +G+ FQV DD LD
Sbjct: 196 LLEASAVLGGIIGGGS--DEEIERLRKFARCIGLLFQVVDDILD 237
>pdb|3LLW|A Chain A, Crystal Structure Of Geranyltransferase From Helicobacter
Pylori 26695
pdb|3LLW|B Chain B, Crystal Structure Of Geranyltransferase From Helicobacter
Pylori 26695
pdb|3LLW|C Chain C, Crystal Structure Of Geranyltransferase From Helicobacter
Pylori 26695
pdb|3LLW|D Chain D, Crystal Structure Of Geranyltransferase From Helicobacter
Pylori 26695
Length = 311
Score = 32.0 bits (71), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 50/216 (23%), Positives = 91/216 (42%), Gaps = 24/216 (11%)
Query: 78 LGWCIEWLQAYFLVLDDI--MDGSHTRRGQPCWF-RVPKVGMIAANDGVLLRNHISRILK 134
+ IE L Y L+ DD+ MD + RR P + + + D L + +L
Sbjct: 79 IALSIECLHTYSLIHDDLPCMDNAALRRNHPTLHAKYDETTAVLIGDA--LNTYSFELLS 136
Query: 135 NHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYY 194
N + V+L+ + +A+G + +I + D + PL+ + + +
Sbjct: 137 NALLESHIIVELIKIL------SANGGIKGMI--LGQALDCYFENTPLNLEQLTFLHEHK 188
Query: 195 SFYLPVACALLMA-------GENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGKV 247
+ L ++ +L+M E L K ++ + +MG+ FQV DD +D E GK
Sbjct: 189 TAKL-ISASLIMGLVASGIKDEELFKWLQAFGL--KMGLCFQVLDDIIDVTQDEEESGKT 245
Query: 248 GTDIEDYKCSWLVVKALELCNEEQKKLVHENYGKVD 283
T ++ K S++ + LE N + L E +D
Sbjct: 246 -THLDSAKNSFVNLLGLERANNYAQTLKTEVLNDLD 280
>pdb|3Q1O|A Chain A, Crystal Structure Of Geranyltransferase From Helicobacter
Pylori Complexed With Magnesium And Isoprenyl
Diphosphate
pdb|3Q1O|B Chain B, Crystal Structure Of Geranyltransferase From Helicobacter
Pylori Complexed With Magnesium And Isoprenyl
Diphosphate
pdb|3Q1O|C Chain C, Crystal Structure Of Geranyltransferase From Helicobacter
Pylori Complexed With Magnesium And Isoprenyl
Diphosphate
pdb|3Q1O|D Chain D, Crystal Structure Of Geranyltransferase From Helicobacter
Pylori Complexed With Magnesium And Isoprenyl
Diphosphate
Length = 310
Score = 31.6 bits (70), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 50/216 (23%), Positives = 91/216 (42%), Gaps = 24/216 (11%)
Query: 78 LGWCIEWLQAYFLVLDDI--MDGSHTRRGQPCWF-RVPKVGMIAANDGVLLRNHISRILK 134
+ IE L Y L+ DD+ MD + RR P + + + D L + +L
Sbjct: 86 IALSIECLHTYSLIHDDLPCMDNAALRRNHPTLHAKYDETTAVLIGDA--LNTYSFELLS 143
Query: 135 NHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYY 194
N + V+L+ + +A+G + +I + D + PL+ + + +
Sbjct: 144 NALLESHIIVELIKIL------SANGGIKGMI--LGQALDCYFENTPLNLEQLTFLHEHK 195
Query: 195 SFYLPVACALLMA-------GENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGKV 247
+ L ++ +L+M E L K ++ + +MG+ FQV DD +D E GK
Sbjct: 196 TAKL-ISASLIMGLVASGIKDEELFKWLQAFGL--KMGLCFQVLDDIIDVTQDEEESGKT 252
Query: 248 GTDIEDYKCSWLVVKALELCNEEQKKLVHENYGKVD 283
T ++ K S++ + LE N + L E +D
Sbjct: 253 -THLDSAKNSFVNLLGLERANNYAQTLKTEVLNDLD 287
>pdb|3P41|A Chain A, Crystal Structure Of Polyprenyl Synthetase From
Pseudomonas Fluorescens Pf-5 Complexed With Magnesium
And Isoprenyl Pyrophosphate
Length = 303
Score = 31.2 bits (69), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
Query: 224 MGIYFQVQDDFLDCFGSPEVIGK-VGTDIEDYKCSWLVVKALELCNEEQKKLVHENYGKV 282
+G+ FQVQDD LD +GK G DI K ++ + L E +L + +
Sbjct: 222 IGLAFQVQDDILDVESDTATLGKRQGADIARDKPTYPALLGLAAAKEYALELRDQALHAL 281
Query: 283 DP--ACVAKVKELYK 295
P A ++EL +
Sbjct: 282 RPFDAAAEPLRELAR 296
>pdb|3TS7|A Chain A, Crystal Structure Of Farnesyl Diphosphate Synthase (Target
Efi-501951) From Methylococcus Capsulatus
pdb|3TS7|B Chain B, Crystal Structure Of Farnesyl Diphosphate Synthase (Target
Efi-501951) From Methylococcus Capsulatus
Length = 324
Score = 31.2 bits (69), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 63/275 (22%), Positives = 108/275 (39%), Gaps = 34/275 (12%)
Query: 26 EFDHDSRQWVDRMLDYNVPGG-KLNRGLSVVDSYRLLKEGKELTDDEFFLSSALGWCI-- 82
+F S++ V+R LD +P ++ L Y +L GK + L+ A G I
Sbjct: 11 DFMRSSQERVERALDARLPAADRMPERLHQAMRYSVLGGGKRMRP---LLTYATGQTIGV 67
Query: 83 ------------EWLQAYFLV--LDDIMDGSHTRRGQP-CWFRVPKVGMIAANDGV-LLR 126
E++ Y L+ MD RRG+P C + I A DG+ L
Sbjct: 68 AADLLDGPACAVEFIHVYSLIHDDLPAMDDDDLRRGKPTCHKAYDEATAILAGDGLQALA 127
Query: 127 NHISRILKNHFRDKPYYVDLLDLFNEVEFQTA--SGQMIDLITTIEGEKDLSKYSLP-LH 183
H+ + + +++ + GQ IDL + + K LP L
Sbjct: 128 FHVLAQDPSIAVPAENRIAMIETLAKASGPAGMVGGQAIDLASVGK------KLDLPGLE 181
Query: 184 RRIVQYKTAYYSFYLPVACALLMAGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEV 243
++ A + +AC L G ++ + +G+ FQ+QDD LD +
Sbjct: 182 NMHIRKTGALIRASVRLAC-LARPGLPAEQFDRLDHYAKCIGLAFQIQDDILDEESDTQT 240
Query: 244 IGKV-GTDIEDYKCSWLVVKALELCNEEQKKLVHE 277
+GK G D + K ++ + L E+ +++ HE
Sbjct: 241 LGKTRGKDRDHNKPNYPALLGLSGAKEKAEEM-HE 274
>pdb|3LJI|A Chain A, Crystal Structure Of Putative Geranyltranstransferase From
Pseudomonas Fluorescens Pf-5
pdb|3LSN|A Chain A, Crystal Structure Of Putative Geranyltranstransferase From
Pseudomonas Fluorescens Pf-5 Complexed With Magnesium
Length = 304
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 224 MGIYFQVQDDFLDCFGSPEVIGK-VGTDIEDYKCSWLVVKALELCNE 269
+G+ FQVQDD LD +GK G DI K ++ + L E
Sbjct: 215 IGLAFQVQDDILDVESDTATLGKRQGADIARDKPTYPALLGLAAAKE 261
>pdb|3FHD|A Chain A, Crystal Structure Of The Shutoff And Exonuclease Protein
From Kaposis Sarcoma Associated Herpesvirus
Length = 508
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 199 PVACALLMAGENLDKHVEVKDILVQMGIYF 228
PV C + G+ LD HVE+ +L+ +YF
Sbjct: 439 PVNCTI--GGDALDPHVEIPTLLIVTPVYF 466
>pdb|2BBZ|A Chain A, Crystal Structure Of Mc159 Reveals Molecular Mechanism Of
Disc Assembly And Vflip Inhibition
pdb|2BBZ|B Chain B, Crystal Structure Of Mc159 Reveals Molecular Mechanism Of
Disc Assembly And Vflip Inhibition
pdb|2BBZ|C Chain C, Crystal Structure Of Mc159 Reveals Molecular Mechanism Of
Disc Assembly And Vflip Inhibition
pdb|2BBZ|D Chain D, Crystal Structure Of Mc159 Reveals Molecular Mechanism Of
Disc Assembly And Vflip Inhibition
Length = 249
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 274 LVHENYGKVDPACVAKVKELYKT---LDLEGAFVEYEKESYEKLTKSIEAHPTKEVQAV 329
L EN G V P+ V+ + ++ +T LDL VEYE++ + A P+ V+ +
Sbjct: 141 LALENVGLVSPSSVSVLADMLRTLRRLDLCQQLVEYEQQEQARYRYCYAASPSLPVRTL 199
>pdb|3POV|A Chain A, Crystal Structure Of A Sox-Dna Complex
Length = 488
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 199 PVACALLMAGENLDKHVEVKDILVQMGIYF 228
PV C + G+ LD HVE+ +L+ +YF
Sbjct: 419 PVNCTI--GGDALDPHVEIPTLLIVTPVYF 446
>pdb|3NF2|A Chain A, Crystal Structure Of Polyprenyl Synthetase From
Streptomyces Coelicolor A3(2)
Length = 352
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 223 QMGIYFQVQDDFLDCFGSPEVIGK-VGTDIEDYKCSWLVV 261
+G+ FQ DD L +G P+ GK +D+ K S VV
Sbjct: 215 HLGLAFQAVDDLLGIWGDPDATGKQTWSDLRQRKKSLPVV 254
>pdb|1Y7O|A Chain A, The Structure Of Streptococcus Pneumoniae A153p Clpp
pdb|1Y7O|B Chain B, The Structure Of Streptococcus Pneumoniae A153p Clpp
pdb|1Y7O|C Chain C, The Structure Of Streptococcus Pneumoniae A153p Clpp
pdb|1Y7O|D Chain D, The Structure Of Streptococcus Pneumoniae A153p Clpp
pdb|1Y7O|E Chain E, The Structure Of Streptococcus Pneumoniae A153p Clpp
pdb|1Y7O|F Chain F, The Structure Of Streptococcus Pneumoniae A153p Clpp
pdb|1Y7O|G Chain G, The Structure Of Streptococcus Pneumoniae A153p Clpp
Length = 218
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 4 LKSRFIEVYGVLKQELLNDPAFEF----DHDSRQWVDRMLDYNVPGGKLNRGLSVVDSYR 59
LK R I + G ++ N + DS + D L N PGG ++ GL++VD+
Sbjct: 43 LKDRIIXLTGPVEDNXANSVIAQLLFLDAQDSTK--DIYLYVNTPGGSVSAGLAIVDTXN 100
Query: 60 LLK 62
+K
Sbjct: 101 FIK 103
>pdb|4FP4|A Chain A, Crystal Structure Of Isoprenoid Synthase A3mx09 (Target
Efi-501993) From Pyrobaculum Calidifontis
pdb|4FP4|B Chain B, Crystal Structure Of Isoprenoid Synthase A3mx09 (Target
Efi-501993) From Pyrobaculum Calidifontis
Length = 285
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 76/180 (42%), Gaps = 42/180 (23%)
Query: 65 KELTDDEFFLSSALGWCIEWLQAYFLVLDDIMDGSHTRRGQPCWFRVPKV-----GMIAA 119
+ + D ++A+ +E L L+ DD+MD RRG + P+ I A
Sbjct: 63 RSIMDPRILEAAAI---VELLHVVSLLQDDVMDQHDQRRG----IKTPRAMYGDGRAIVA 115
Query: 120 NDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEGEKDLSKYS 179
+D + I+ +K D++ +V + + GQ +DL EGE+D
Sbjct: 116 SDWL-----IAESIKMAVN---LGADVVTYLADVAQRLSVGQALDL----EGERD----- 158
Query: 180 LPLHRRIVQYKTAYYSFYLPVACALLMAGENLDKH--VEV-KDILVQMGIYFQVQDDFLD 236
+ ++KTA + AL+M L + +E K + ++GI +Q DD+ D
Sbjct: 159 -----KAAEFKTAPL-----IEAALVMPLVILGRRELIETAKKLGTKLGILYQYSDDYSD 208
>pdb|3GVH|A Chain A, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis
pdb|3GVH|B Chain B, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis
pdb|3GVH|C Chain C, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis
pdb|3GVH|D Chain D, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis
pdb|3GVI|A Chain A, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis In Complex With Adp
pdb|3GVI|B Chain B, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis In Complex With Adp
pdb|3GVI|C Chain C, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis In Complex With Adp
pdb|3GVI|D Chain D, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis In Complex With Adp
pdb|3GVI|E Chain E, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis In Complex With Adp
pdb|3GVI|F Chain F, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis In Complex With Adp
Length = 324
Score = 28.1 bits (61), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 195 SFYLPVACALLMAGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVGTD 250
+FY P A A+ MA L V + Q+ + V+D ++ G P VIG G +
Sbjct: 235 AFYAPAASAIQMAESYLKDKKRVLPVAAQLSGQYGVKDMYV---GVPTVIGANGVE 287
>pdb|2BBR|A Chain A, Crystal Structure Of Mc159 Reveals Molecular Mechanism Of
Disc Assembly And Vflip Inhibition
Length = 195
Score = 28.1 bits (61), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Query: 274 LVHENYGKVDPACVAKVKELYKT---LDLEGAFVEYEKE 309
L EN G V P+ V+ + ++ +T LDL VEYE++
Sbjct: 141 LALENVGLVSPSSVSVLADMLRTLRRLDLCQQLVEYEQQ 179
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.139 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,762,626
Number of Sequences: 62578
Number of extensions: 474725
Number of successful extensions: 1465
Number of sequences better than 100.0: 89
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 50
Number of HSP's that attempted gapping in prelim test: 1340
Number of HSP's gapped (non-prelim): 93
length of query: 342
length of database: 14,973,337
effective HSP length: 100
effective length of query: 242
effective length of database: 8,715,537
effective search space: 2109159954
effective search space used: 2109159954
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)