Query 019339
Match_columns 342
No_of_seqs 125 out of 1510
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 08:39:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019339.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019339hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10888 octaprenyl diphosphat 100.0 2.4E-64 5.2E-69 477.8 30.7 292 32-342 29-323 (323)
2 TIGR02748 GerC3_HepT heptapren 100.0 6.5E-64 1.4E-68 474.9 30.5 290 32-342 28-319 (319)
3 COG0142 IspA Geranylgeranyl py 100.0 9.1E-63 2E-67 467.1 33.5 315 7-342 6-322 (322)
4 PLN02890 geranyl diphosphate s 100.0 5E-63 1.1E-67 478.8 31.3 321 5-342 78-422 (422)
5 TIGR02749 prenyl_cyano solanes 100.0 2.3E-62 5.1E-67 464.3 29.5 312 11-341 6-321 (322)
6 PLN02857 octaprenyl-diphosphat 100.0 3.6E-62 7.8E-67 473.2 29.7 320 6-342 92-416 (416)
7 CHL00151 preA prenyl transfera 100.0 5.4E-62 1.2E-66 462.5 29.5 291 33-342 31-323 (323)
8 PRK10581 geranyltranstransfera 100.0 2.8E-57 6E-62 425.0 27.4 280 9-342 8-299 (299)
9 cd00685 Trans_IPPS_HT Trans-Is 100.0 3.7E-54 8E-59 397.9 26.9 254 33-340 4-259 (259)
10 PF00348 polyprenyl_synt: Poly 100.0 1.8E-54 3.9E-59 400.2 19.8 256 34-307 1-259 (260)
11 KOG0711 Polyprenyl synthetase 100.0 3.6E-52 7.7E-57 377.3 30.3 336 4-342 8-347 (347)
12 KOG0776 Geranylgeranyl pyropho 100.0 1.9E-52 4.1E-57 392.7 27.9 288 31-340 91-384 (384)
13 cd00867 Trans_IPPS Trans-Isopr 100.0 4.6E-40 1E-44 299.4 25.5 233 49-340 1-236 (236)
14 KOG0777 Geranylgeranyl pyropho 100.0 9.4E-39 2E-43 277.6 18.1 277 30-330 18-298 (322)
15 cd00385 Isoprenoid_Biosyn_C1 I 99.9 2E-20 4.4E-25 167.6 26.2 223 77-337 14-241 (243)
16 cd00683 Trans_IPPS_HH Trans-Is 96.5 0.46 1E-05 43.8 19.3 133 153-323 94-226 (265)
17 PLN02632 phytoene synthase 95.7 0.35 7.6E-06 46.5 14.4 135 154-324 142-279 (334)
18 TIGR03465 HpnD squalene syntha 95.4 0.53 1.2E-05 43.6 14.1 132 154-324 87-218 (266)
19 TIGR03464 HpnC squalene syntha 95.1 2.8 6.1E-05 38.7 22.5 131 154-324 88-219 (266)
20 PF07307 HEPPP_synt_1: Heptapr 95.0 0.42 9.1E-06 42.7 11.5 104 67-192 30-134 (212)
21 TIGR01559 squal_synth farnesyl 94.9 1.2 2.5E-05 42.9 15.0 150 145-325 101-250 (336)
22 PF00494 SQS_PSY: Squalene/phy 93.9 2.3 5E-05 39.1 14.5 140 152-328 91-232 (267)
23 cd00687 Terpene_cyclase_nonpla 91.3 13 0.00027 34.8 17.2 89 144-239 128-220 (303)
24 COG1562 ERG9 Phytoene/squalene 85.7 21 0.00046 33.5 13.0 135 152-324 103-237 (288)
25 PF06783 UPF0239: Uncharacteri 69.6 6.2 0.00013 29.8 3.2 29 210-238 14-42 (85)
26 cd00868 Terpene_cyclase_C1 Ter 53.8 1.7E+02 0.0037 26.5 18.2 106 145-267 122-233 (284)
27 PRK12884 ubiA prenyltransferas 49.9 2.1E+02 0.0045 26.3 15.6 61 197-267 140-200 (279)
28 PF00348 polyprenyl_synt: Poly 45.4 1.1E+02 0.0023 28.0 7.9 56 200-266 21-76 (260)
29 PRK13591 ubiA prenyltransferas 43.5 3E+02 0.0064 26.2 11.9 32 226-267 193-224 (307)
30 PRK13105 ubiA prenyltransferas 39.2 61 0.0013 30.4 5.2 35 224-268 172-206 (282)
31 cd00685 Trans_IPPS_HT Trans-Is 37.3 81 0.0018 28.8 5.8 29 208-236 34-63 (259)
32 KOG1345 Serine/threonine kinas 36.8 20 0.00044 33.6 1.6 19 77-95 129-147 (378)
33 PRK10888 octaprenyl diphosphat 36.6 71 0.0015 30.5 5.4 49 203-262 55-103 (323)
34 PRK12872 ubiA prenyltransferas 35.0 70 0.0015 29.6 5.0 35 223-267 172-206 (285)
35 PF01040 UbiA: UbiA prenyltran 34.4 94 0.002 27.8 5.6 42 215-266 149-190 (257)
36 PF06603 UpxZ: UpxZ family of 31.2 2.7E+02 0.0057 22.0 7.9 67 268-334 31-104 (106)
37 PRK12882 ubiA prenyltransferas 31.0 4.2E+02 0.0091 24.3 15.9 35 223-267 168-202 (276)
38 PLN00012 chlorophyll synthetas 28.5 75 0.0016 31.1 4.1 34 223-266 263-296 (375)
39 KOG3330 Transport protein part 26.6 1.2E+02 0.0026 25.8 4.4 57 187-253 13-75 (183)
40 PRK09573 (S)-2,3-di-O-geranylg 26.6 5.1E+02 0.011 23.8 15.3 35 77-111 41-78 (279)
41 TIGR02748 GerC3_HepT heptapren 26.5 1.2E+02 0.0027 28.7 5.2 49 203-262 54-102 (319)
42 PRK13595 ubiA prenyltransferas 26.2 1.2E+02 0.0026 28.6 4.9 59 197-267 156-214 (292)
43 PRK07566 bacteriochlorophyll/c 25.3 5.8E+02 0.013 24.0 12.8 31 226-266 203-233 (314)
44 KOG0018 Structural maintenance 23.7 83 0.0018 34.7 3.6 54 5-64 992-1055(1141)
45 PRK10581 geranyltranstransfera 23.5 1.7E+02 0.0037 27.5 5.4 50 204-264 56-107 (299)
46 PF15080 DUF4547: Domain of un 20.9 5.4E+02 0.012 22.1 8.8 74 248-321 77-154 (196)
47 KOG0192 Tyrosine kinase specif 20.7 36 0.00077 33.1 0.2 24 72-95 145-169 (362)
48 KOG0194 Protein tyrosine kinas 20.7 62 0.0013 32.7 1.9 26 70-95 263-288 (474)
49 TIGR02056 ChlG chlorophyll syn 20.4 1.7E+02 0.0036 27.6 4.7 34 224-267 195-228 (306)
No 1
>PRK10888 octaprenyl diphosphate synthase; Provisional
Probab=100.00 E-value=2.4e-64 Score=477.78 Aligned_cols=292 Identities=20% Similarity=0.244 Sum_probs=262.0
Q ss_pred HHHHHHHhhccc-CCCccchHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCcCcccccc
Q 019339 32 RQWVDRMLDYNV-PGGKLNRGLSVVDSYRLLKEGKELTDDEFFLSSALGWCIEWLQAYFLVLDDIMDGSHTRRGQPCWFR 110 (342)
Q Consensus 32 ~~~l~~~~~~~~-~~GK~~Rp~l~~~~~~~~~~g~~~~~~~~~~a~~lA~a~EllH~asLihDDI~D~~~~RRg~p~~~~ 110 (342)
.+.+.++..|.+ .+|||+||.+++++++++ |+ +++ .++++|+++|++|+||||||||||+|++|||+||+|.
T Consensus 29 ~~~l~~~~~~~~~~~GKrlRp~l~ll~~~~~-g~---~~~---~~~~~A~avEllH~asLiHDDI~D~s~~RRG~pt~~~ 101 (323)
T PRK10888 29 VQLINQLGYYIISGGGKRIRPMIAVLAARAV-GY---QGN---AHVTIAALIEFIHTATLLHDDVVDESDMRRGKATANA 101 (323)
T ss_pred chhHHHHHHHHHhCCCchHHHHHHHHHHHHc-CC---ChH---HHHHHHHHHHHHHHHHHHHcccccCCcccCCCCCHHH
Confidence 355888999998 999999999999999998 44 222 3568999999999999999999999999999999999
Q ss_pred cccchhhHhhhHHHHHHHHHHHHHcccCCCchHHHHHHHHHHHHHHHhHHHHHhccccccCcccCCCCCHHHHHHHHHcc
Q 019339 111 VPKVGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYK 190 (342)
Q Consensus 111 ~~g~~~ia~~d~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~~d~~~~~~~~~~~~~~~~~~y~~~~~~K 190 (342)
+||+. ++++.|+++++.++..+.+.. ..++++.+++++..++.||.+|+.+..+. ++++++|++|+.+|
T Consensus 102 ~~G~~-~Ail~GD~L~~~a~~~l~~~~-----~~~~~~~~~~~~~~~~~Gq~~d~~~~~~~-----~~s~~~y~~~i~~K 170 (323)
T PRK10888 102 AFGNA-ASVLVGDFIYTRAFQMMTSLG-----SLKVLEVMSEAVNVIAEGEVLQLMNVNDP-----DITEENYMRVIYSK 170 (323)
T ss_pred HhCcc-HHHHHHHHHHHHHHHHHHhCC-----CHHHHHHHHHHHHHHHHHHHHHHHhccCC-----CCCHHHHHHHHHHH
Confidence 99987 455555556678888887641 36788899999999999999999875432 57999999999999
Q ss_pred hhhhhhHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCccccCC-cccchhhccchHHHHHHHhhccH
Q 019339 191 TAYYSFYLPVACALLMAGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGK-VGTDIEDYKCSWLVVKALELCNE 269 (342)
Q Consensus 191 Tg~l~~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DDlld~~~~~~~~GK-~~~Dl~~gk~Tlp~l~al~~~~~ 269 (342)
||+| |++||.+|++++|++++.++.+++||+++|+||||+||++||+++++.+|| .|+|+++||+|||++++++..++
T Consensus 171 Ta~l-f~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~ld~~~~~~~~GK~~g~Dl~~gk~Tlp~l~al~~~~~ 249 (323)
T PRK10888 171 TARL-FEAAAQCSGILAGCTPEQEKGLQDYGRYLGTAFQLIDDLLDYSADGETLGKNVGDDLNEGKPTLPLLHAMHHGTP 249 (323)
T ss_pred HHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCChHhhCCCchhhhhcCCchHHHHHHHHhCCH
Confidence 9999 999999999999999999999999999999999999999999999999999 89999999999999999999888
Q ss_pred HHHHHHHHHhCCCC-hHhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhccC
Q 019339 270 EQKKLVHENYGKVD-PACVAKVKELYKTLDLEGAFVEYEKESYEKLTKSIEAHPTKEVQAVLKSFLAKIYKRQK 342 (342)
Q Consensus 270 ~~~~~l~~~~~~~~-~~~~~~i~~li~~~g~~~~~~~~~~~~~~~a~~~l~~lp~~~~~~~L~~l~~~~~~R~~ 342 (342)
+.++.+..++++.+ +++++++.+++.++|+++++++++++|.++|++.|+.+|+++.++.|..+++++++|++
T Consensus 250 ~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~e~~~~~a~~~~~~A~~~L~~lp~~~~~~~L~~l~~~~~~R~~ 323 (323)
T PRK10888 250 EQAAMIRTAIEQGNGRHLLEPVLEAMNACGSLEWTRQRAEEEADKAIAALQVLPDTPWREALIGLAHIAVQRDR 323 (323)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCcC
Confidence 88888988886653 56789999999999999999999999999999999999999999999999999999975
No 2
>TIGR02748 GerC3_HepT heptaprenyl diphosphate synthase component II. Members of this family are component II of the heterodimeric heptaprenyl diphosphate synthase. The trusted cutoff was set such that all members identified are encoded near to a recognizable gene for component I (in Pfam family pfam07307). This enzyme acts in menaquinone-7 isoprenoid side chain biosynthesis.
Probab=100.00 E-value=6.5e-64 Score=474.88 Aligned_cols=290 Identities=19% Similarity=0.151 Sum_probs=258.1
Q ss_pred HHHHHHHhhccc-CCCccchHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCcCcccccc
Q 019339 32 RQWVDRMLDYNV-PGGKLNRGLSVVDSYRLLKEGKELTDDEFFLSSALGWCIEWLQAYFLVLDDIMDGSHTRRGQPCWFR 110 (342)
Q Consensus 32 ~~~l~~~~~~~~-~~GK~~Rp~l~~~~~~~~~~g~~~~~~~~~~a~~lA~a~EllH~asLihDDI~D~~~~RRg~p~~~~ 110 (342)
.+.+.+++.|.+ .||||+||+||+++++++ |. +++ .++.+|+++|+||+||||||||+|+|++|||+||+|.
T Consensus 28 ~~~l~~~~~~~~~~gGKriRp~L~ll~~~~~--~~--~~~---~~~~~A~aiEliH~asLiHDDI~D~s~~RRg~pt~~~ 100 (319)
T TIGR02748 28 HPVLSEASLHLLEAGGKRIRPVFVLLAGKFG--DY--DLD---AIKHVAVALELIHMASLVHDDVIDDADLRRGRPTIKS 100 (319)
T ss_pred chHHHHHHHHHHhcCCchHHHHHHHHHHHHc--CC--CHH---HHHHHHHHHHHHHHHHHHhccccCCCCCCCCCcCHHH
Confidence 355788888887 999999999999999987 42 222 3568899999999999999999999999999999999
Q ss_pred cccchhhHhhhHHHHHHHHHHHHHcccCCCchHHHHHHHHHHHHHHHhHHHHHhccccccCcccCCCCCHHHHHHHHHcc
Q 019339 111 VPKVGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYK 190 (342)
Q Consensus 111 ~~g~~~ia~~d~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~~d~~~~~~~~~~~~~~~~~~y~~~~~~K 190 (342)
+||+. ++++.|+++++.++..+.+.. ..++++.+++++..++.||++|+.+..+. .+++++|++|+.+|
T Consensus 101 ~~G~~-~Ail~GD~L~~~a~~~l~~~~-----~~~~~~~~~~~~~~~~~Gq~~~~~~~~~~-----~~~~~~Y~~~i~~K 169 (319)
T TIGR02748 101 KWGNR-IAMYTGDYLFAKSLETMTEIK-----DPRAHQILSHTIVEVCRGEIEQIKDKYNF-----DQNLRTYLRRIKRK 169 (319)
T ss_pred HhChH-HHHHHHHHHHHHHHHHHHhCC-----cHHHHHHHHHHHHHHHHHHHHHHHhccCC-----CCCHHHHHHHHHHH
Confidence 99987 455555556677888887642 25678889999999999999999875431 46899999999999
Q ss_pred hhhhhhHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCccccCC-cccchhhccchHHHHHHHhhccH
Q 019339 191 TAYYSFYLPVACALLMAGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGK-VGTDIEDYKCSWLVVKALELCNE 269 (342)
Q Consensus 191 Tg~l~~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DDlld~~~~~~~~GK-~~~Dl~~gk~Tlp~l~al~~~~~ 269 (342)
||+| |++||.+|++++|++++.++.+++||.++|+||||+||++||+++++.+|| .++|+++||+|+|++++++..+
T Consensus 170 Ta~L-~~~~~~~ga~~ag~~~~~~~~l~~~g~~lG~aFQI~DDilD~~~~~~~~GK~~~~Dl~~gk~Tlp~l~al~~~~- 247 (319)
T TIGR02748 170 TALL-IAASCQLGAIASGANEAIVKKLYWFGYYVGMSYQITDDILDFVGTEEELGKPAGGDLLQGNVTLPVLYAMEDPF- 247 (319)
T ss_pred HHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHhhCCChhhHHhCCCchHHHHHHhcCcc-
Confidence 9999 999999999999999999999999999999999999999999999999999 8999999999999999999533
Q ss_pred HHHHHHHHHhCCCChHhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhccC
Q 019339 270 EQKKLVHENYGKVDPACVAKVKELYKTLDLEGAFVEYEKESYEKLTKSIEAHPTKEVQAVLKSFLAKIYKRQK 342 (342)
Q Consensus 270 ~~~~~l~~~~~~~~~~~~~~i~~li~~~g~~~~~~~~~~~~~~~a~~~l~~lp~~~~~~~L~~l~~~~~~R~~ 342 (342)
.++.+..++++.+++++.++.++++++|++++++.+++.|.++|++.|+.+|+++.++.|..+++++++|++
T Consensus 248 -~~~~l~~~~~~~~~~~~~~~~~~i~~~g~~~~a~~~a~~~~~~A~~~L~~lp~~~~~~~L~~l~~~~~~R~~ 319 (319)
T TIGR02748 248 -LKKRIEQVLEETTAEEMEPLIEEVKKSDAIEYAYAVSDRYLKKALELLDGLPDGRAKKPLQEIAKYIGKRKY 319 (319)
T ss_pred -hhHHHHHHHcCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccC
Confidence 677888888777788899999999999999999999999999999999999999999999999999999975
No 3
>COG0142 IspA Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism]
Probab=100.00 E-value=9.1e-63 Score=467.11 Aligned_cols=315 Identities=25% Similarity=0.256 Sum_probs=273.1
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHhhccc-CCCccchHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHHHH
Q 019339 7 RFIEVYGVLKQELLNDPAFEFDHDSRQWVDRMLDYNV-PGGKLNRGLSVVDSYRLLKEGKELTDDEFFLSSALGWCIEWL 85 (342)
Q Consensus 7 ~f~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~GK~~Rp~l~~~~~~~~~~g~~~~~~~~~~a~~lA~a~Ell 85 (342)
.+......+.+.|...... ..++.+.+++.|.+ .||||+||++++++++++ |+ ..++. ...++.+|+++|++
T Consensus 6 ~~~~~~~~i~~~l~~~l~~----~~~~~l~~a~~~~~~aGGKrlRP~l~l~~~~~~-~~-~~~~~-~~~~~~~aaavEli 78 (322)
T COG0142 6 LLLKRLARIEELLSELLSG----SDPELLLEAMRYLLLAGGKRLRPLLVLLAAEAL-GI-DLETG-GNDALDLAAAIELI 78 (322)
T ss_pred HHHHHHHHHHHHHHHHhcc----cccHHHHHHHHHHHhcCCccHhHHHHHHHHHHc-CC-Ccccc-hhhHHHHHHHHHHH
Confidence 4555556666666642111 34466888888888 899999999999999999 32 22221 34578899999999
Q ss_pred HHHHHHhhhhcCCCCCCcCcccccccccchhhHhhhHHHHHHHHHHHHHcccCCCchHHHHHHHHHHHHHHHhHHHHHhc
Q 019339 86 QAYFLVLDDIMDGSHTRRGQPCWFRVPKVGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDL 165 (342)
Q Consensus 86 H~asLihDDI~D~~~~RRg~p~~~~~~g~~~ia~~d~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~~d~ 165 (342)
|++|||||||||+|++|||+||+|.+||.. .++..|+++++.+|.++++...+ ...+...++.++..++.||.+|+
T Consensus 79 H~~SLiHDDvmD~s~~RRG~pt~~~~~g~~-~AIlaGD~L~~~Af~~l~~~~~~---~~~~~~~~~~~~~~~~~GQ~lDl 154 (322)
T COG0142 79 HTASLIHDDLMDDDDLRRGKPTVHAKFGEA-TAILAGDALLAAAFELLSKLGSE---ALEAIKALAEAINGLCGGQALDL 154 (322)
T ss_pred HHHHHHHhhcccCCCccCCCCCchhHhccH-HHHHHHHHHHHHHHHHHHhCCch---hHHHHHHHHHHHHHHHHhHHHHH
Confidence 999999999999999999999999999987 34555555557889999886322 37888999999999999999999
Q ss_pred cccccCcccCCCCCHHHHHHHHHcchhhhhhHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCccccC
Q 019339 166 ITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIG 245 (342)
Q Consensus 166 ~~~~~~~~~~~~~~~~~y~~~~~~KTg~l~~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DDlld~~~~~~~~G 245 (342)
.+..+ .+|+++|++|+++|||.| |+++|.+|+++++++++..+.++.||.++|+||||+||++|++++++++|
T Consensus 155 ~~~~~------~~t~e~y~~~i~~KTa~L-~~~a~~~ga~la~~~~~~~~~l~~~g~~lGlaFQi~DDiLD~~~d~~~lG 227 (322)
T COG0142 155 AFENK------PVTLEEYLRVIELKTAAL-FAAAAVLGAILAGADEELLEALEDYGRNLGLAFQIQDDILDITGDEEELG 227 (322)
T ss_pred HccCC------CCCHHHHHHHHHHHHHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHhhHHHHHHHHhhcCCCChHHhC
Confidence 98754 369999999999999999 99999999999999999999999999999999999999999999999999
Q ss_pred C-cccchhhccchHHHHHHHhhccHHHHHHHHHHhCCCChHhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHhhcCCCh
Q 019339 246 K-VGTDIEDYKCSWLVVKALELCNEEQKKLVHENYGKVDPACVAKVKELYKTLDLEGAFVEYEKESYEKLTKSIEAHPTK 324 (342)
Q Consensus 246 K-~~~Dl~~gk~Tlp~l~al~~~~~~~~~~l~~~~~~~~~~~~~~i~~li~~~g~~~~~~~~~~~~~~~a~~~l~~lp~~ 324 (342)
| +|+|+++||+|||++++++.++++++ .+...+.... +++++++++.++|+++++..++..|.++|.+.|+.+|++
T Consensus 228 K~~g~Dl~~gK~T~p~l~~l~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~a~~~~~~a~~~L~~l~~~ 304 (322)
T COG0142 228 KPVGSDLKEGKPTLPVLLALEKANEDQK-LLRILLEGGG--EVEEALELLRKSGAIEYAKNLAKTYVEKAKEALEKLPDS 304 (322)
T ss_pred CCcchHHHcCCchHHHHHHHHcCchhhH-HHHHHhhcch--HHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 9 89999999999999999999988777 7766665545 899999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHhhccC
Q 019339 325 EVQAVLKSFLAKIYKRQK 342 (342)
Q Consensus 325 ~~~~~L~~l~~~~~~R~~ 342 (342)
+.++.|..+++++++|++
T Consensus 305 ~~~~~L~~la~~i~~R~~ 322 (322)
T COG0142 305 EAKEALLELADFIIKRKY 322 (322)
T ss_pred hHHHHHHHHHHHHHhccC
Confidence 999999999999999974
No 4
>PLN02890 geranyl diphosphate synthase
Probab=100.00 E-value=5e-63 Score=478.83 Aligned_cols=321 Identities=19% Similarity=0.196 Sum_probs=269.8
Q ss_pred HHHHHHHHHHHHHHHhC-CCCC-CCCcchHHHHHHHhhccc-CC--CccchHHHHHHHHHHhhCCCCCCh----------
Q 019339 5 KSRFIEVYGVLKQELLN-DPAF-EFDHDSRQWVDRMLDYNV-PG--GKLNRGLSVVDSYRLLKEGKELTD---------- 69 (342)
Q Consensus 5 ~~~f~~~~~~l~~~l~~-~~~~-~~~~~~~~~l~~~~~~~~-~~--GK~~Rp~l~~~~~~~~~~g~~~~~---------- 69 (342)
.+...+.|+.+++++.. +..+ +......+.+.++..|.+ .| |||+||++++++++++ |+ ..++
T Consensus 78 ~~~~~~~~~~i~~~L~~v~~~L~~~v~~~~~~l~~a~~y~~~~G~~GKrlRP~LvLL~a~a~-g~-~~~~~~~~~~~~~~ 155 (422)
T PLN02890 78 VEEQLDPFSLVADELSLLANKLRSMVVAEVPKLASAAEYFFKVGVEGKRFRPTVLLLMATAL-NV-PLPESTEGGVLDIV 155 (422)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHccCChHHHHHHHHHHhCCCCCccHhHHHHHHHHHHc-CC-Ccccccccccchhh
Confidence 45567778888888877 3322 222234466889999998 78 9999999999999998 33 2111
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCcCcccccccccchhhHhhhHHHHHHHHHHHHHcccCCCchHHHHH
Q 019339 70 --DEFFLSSALGWCIEWLQAYFLVLDDIMDGSHTRRGQPCWFRVPKVGMIAANDGVLLRNHISRILKNHFRDKPYYVDLL 147 (342)
Q Consensus 70 --~~~~~a~~lA~a~EllH~asLihDDI~D~~~~RRg~p~~~~~~g~~~ia~~d~~~l~~~~~~~l~~~~~~~~~~~~~~ 147 (342)
+...+++.+|+++|+||+||||||||||++++|||+||+|.+||+. +||..|+++++.++..+.+.. ..+++
T Consensus 156 ~~~~~~~~~~~AaavEliH~ASLVHDDIiD~s~~RRG~pt~~~~~G~~-~AIlaGD~Lla~A~~~l~~~~-----~~~~~ 229 (422)
T PLN02890 156 ASELRTRQQNIAEITEMIHVASLLHDDVLDDADTRRGVGSLNVVMGNK-LSVLAGDFLLSRACVALAALK-----NTEVV 229 (422)
T ss_pred ccchhhhHHHHHHHHHHHHHHHHHHcccccCCCCcCCCcChhhhcChH-HHHHHHHHHHHHHHHHHHcCC-----cHHHH
Confidence 0123467899999999999999999999999999999999999987 344444455577788876541 36788
Q ss_pred HHHHHHHHHHhHHHHHhccccccCcccCCCCCHHHHHHHHHcchhhhhhHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Q 019339 148 DLFNEVEFQTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAGENLDKHVEVKDILVQMGIY 227 (342)
Q Consensus 148 ~~~~~~~~~~~~GQ~~d~~~~~~~~~~~~~~~~~~y~~~~~~KTg~l~~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~a 227 (342)
+.+++++..++.||.+|+.+..+. .+++++|++++.+|||+| |+.+|.+|++++|++++.++.+++||+++|+|
T Consensus 230 ~~~s~a~~~l~~Gq~ld~~~~~~~-----~~s~~~Yl~~i~~KTa~L-f~~s~~~gAilaga~~~~~~~l~~fG~~lGlA 303 (422)
T PLN02890 230 SLLATAVEHLVTGETMQITSSREQ-----RRSMDYYMQKTYYKTASL-ISNSCKAVAILAGQTAEVAVLAFEYGRNLGLA 303 (422)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCC-----CCCHHHHHHHHHHhHHHH-HHHHHHHHHHHcCcCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999886532 579999999999999999 99999999999999999999999999999999
Q ss_pred HHHHhhhhhhcCCccccCC-cccchhhccchHHHHHHHhhccHHHHHHHHHHhCCCChHhHHHHHHHHHHcChHHHHHHH
Q 019339 228 FQVQDDFLDCFGSPEVIGK-VGTDIEDYKCSWLVVKALELCNEEQKKLVHENYGKVDPACVAKVKELYKTLDLEGAFVEY 306 (342)
Q Consensus 228 fQi~DDlld~~~~~~~~GK-~~~Dl~~gk~Tlp~l~al~~~~~~~~~~l~~~~~~~~~~~~~~i~~li~~~g~~~~~~~~ 306 (342)
|||+||++||+++++.+|| .++||++||+|||++++++. .++.++.+.+. ..++++++++.+++.++|++++++..
T Consensus 304 FQI~DDiLD~~g~~~~~GK~~g~DL~eGk~TlPvl~al~~-~~~l~~~l~~~--~~~~~~v~~~~~~i~~~gaie~a~~l 380 (422)
T PLN02890 304 FQLIDDVLDFTGTSASLGKGSLSDIRHGVITAPILFAMEE-FPQLREVVDRG--FDNPANVDIALEYLGKSRGIQRTREL 380 (422)
T ss_pred HHHHHHHHhhcCChhhhCCCchhhHhcCCccHHHHHHHhc-CHHHHHHHhcc--cCCHHHHHHHHHHHHHcCHHHHHHHH
Confidence 9999999999999999999 89999999999999999975 34344433321 22577899999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCChH------HHHHHHHHHHHHhhccC
Q 019339 307 EKESYEKLTKSIEAHPTKE------VQAVLKSFLAKIYKRQK 342 (342)
Q Consensus 307 ~~~~~~~a~~~l~~lp~~~------~~~~L~~l~~~~~~R~~ 342 (342)
+++|.++|++.|+.+|+++ .++.|..+++++++|+|
T Consensus 381 a~~~~~~A~~~L~~lp~s~~~~~~~~r~~L~~L~~~vi~R~k 422 (422)
T PLN02890 381 AREHANLAAAAIESLPETDDEDVLTSRRALIDLTERVITRNK 422 (422)
T ss_pred HHHHHHHHHHHHHhCCCCccccchHHHHHHHHHHHHHHhccC
Confidence 9999999999999999886 79999999999999986
No 5
>TIGR02749 prenyl_cyano solanesyl diphosphate synthase. Members of this family all are from cyanobacteria or plastid-containing eukaryotes. A member from Arabidopsis (where both plastoquinone and ubiquinone contain the C(45) prenyl moiety) was characterized by heterologous expression as a solanesyl diphosphate synthase.
Probab=100.00 E-value=2.3e-62 Score=464.30 Aligned_cols=312 Identities=21% Similarity=0.205 Sum_probs=260.6
Q ss_pred HHHHHHHHHhC-CCCC-CCCcchHHHHHHHhhccc-CCCccchHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHHHHHH
Q 019339 11 VYGVLKQELLN-DPAF-EFDHDSRQWVDRMLDYNV-PGGKLNRGLSVVDSYRLLKEGKELTDDEFFLSSALGWCIEWLQA 87 (342)
Q Consensus 11 ~~~~l~~~l~~-~~~~-~~~~~~~~~l~~~~~~~~-~~GK~~Rp~l~~~~~~~~~~g~~~~~~~~~~a~~lA~a~EllH~ 87 (342)
+++.++.++.+ +..+ +......+.+.+++.|.+ .||||+||.+|+++++++ |+....+ ..++.+|+++|++|+
T Consensus 6 ~~~~~~~~l~~v~~~l~~~~~~~~~~l~~~~~~~~~~gGKrlRp~l~ll~~~~~-~~~~~~~---~~~~~~A~avEliH~ 81 (322)
T TIGR02749 6 LFAPVEDDLYLLTDNLKSLVGARHPILYAAAEHLFSAGGKRLRPAIVLLVSRAT-AEQQELT---PRHRRLAEITEMIHT 81 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHCCCchHHHHHHHHHHHHc-CCCcccc---HHHHHHHHHHHHHHH
Confidence 44455555554 2211 111223356888888888 999999999999999998 3321111 235678999999999
Q ss_pred HHHHhhhhcCCCCCCcCcccccccccchhhHhhhHHHHHHHHHHHHHcccCCCchHHHHHHHHHHHHHHHhHHHHHhccc
Q 019339 88 YFLVLDDIMDGSHTRRGQPCWFRVPKVGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLIT 167 (342)
Q Consensus 88 asLihDDI~D~~~~RRg~p~~~~~~g~~~ia~~d~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~~d~~~ 167 (342)
||||||||||+|++|||+||+|++||+. +|++.|+++++.++..+++.. ..++++.+++++..++.||+.|+.+
T Consensus 82 asLiHDDiiD~s~~RRG~pt~h~~~G~~-~Ail~GD~l~~~a~~~l~~~~-----~~~~~~~~~~~~~~~~~Gq~~~~~~ 155 (322)
T TIGR02749 82 ASLVHDDVIDESDTRRGIETVHSLFGTR-VAVLAGDFLFAQASWYLANLE-----NLEVVKLISKVITDFAEGEIKQGLN 155 (322)
T ss_pred HHHHHcccccCccccCCCccHHHHhCcH-HHHHHHHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999987 345555555677888887641 3578899999999999999999876
Q ss_pred cccCcccCCCCCHHHHHHHHHcchhhhhhHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCccccCC-
Q 019339 168 TIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGK- 246 (342)
Q Consensus 168 ~~~~~~~~~~~~~~~y~~~~~~KTg~l~~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DDlld~~~~~~~~GK- 246 (342)
.... ++++++|++|+.+|||+| |++||.+|++++|++++.++.+++||.++|+||||+||++|++++++.+||
T Consensus 156 ~~~~-----~~~~~~y~~~~~~KTa~L-~~~~~~~ga~~ag~~~~~~~~l~~~G~~lG~aFQi~DDild~~~~~~~~GK~ 229 (322)
T TIGR02749 156 QFDS-----DLSLEDYLEKSFYKTASL-VAASSKAAAVLSDVPSQVANDLYEYGKHLGLAFQVVDDILDFTGSTEQLGKP 229 (322)
T ss_pred ccCC-----CCCHHHHHHHHHccHHHH-HHHHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHhhCCC
Confidence 5432 479999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhccchHHHHHHHhhccHHHHHHHHHHhCCCChHhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHhhcCCChHH
Q 019339 247 VGTDIEDYKCSWLVVKALELCNEEQKKLVHENYGKVDPACVAKVKELYKTLDLEGAFVEYEKESYEKLTKSIEAHPTKEV 326 (342)
Q Consensus 247 ~~~Dl~~gk~Tlp~l~al~~~~~~~~~~l~~~~~~~~~~~~~~i~~li~~~g~~~~~~~~~~~~~~~a~~~l~~lp~~~~ 326 (342)
.++||++||+|+|++++++. +++.++.+.+.. .++++++++.+++.++|++++++++++.|.++|++.|+.+|+++.
T Consensus 230 ~g~Dl~~Gk~Tlp~l~al~~-~~~~~~~l~~~~--~~~~~~~~~~~~i~~~ga~~~a~~~~~~~~~~A~~~L~~lp~~~~ 306 (322)
T TIGR02749 230 AGSDLMKGNLTAPVLFALEE-EPKLSELIEREF--SQKGDLEQALSLVRKSGGIKKARELAKEQAQLALQSLSFLPPSPP 306 (322)
T ss_pred hhHHHhCCCchHHHHHHHhc-ChHHHHHHHhcc--CCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHhCCCCHH
Confidence 89999999999999999986 444444443322 256788999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcc
Q 019339 327 QAVLKSFLAKIYKRQ 341 (342)
Q Consensus 327 ~~~L~~l~~~~~~R~ 341 (342)
++.|..+++++++|+
T Consensus 307 ~~~L~~l~~~~~~R~ 321 (322)
T TIGR02749 307 REALKELVHFVLSRL 321 (322)
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999999996
No 6
>PLN02857 octaprenyl-diphosphate synthase
Probab=100.00 E-value=3.6e-62 Score=473.21 Aligned_cols=320 Identities=20% Similarity=0.213 Sum_probs=267.5
Q ss_pred HHHHHHHHHHHHHHhC-CCCC-CCCcchHHHHHHHhhccc-CCCccchHHHHHHHHHHhhCCC-CCChHHHHHHHHHHHH
Q 019339 6 SRFIEVYGVLKQELLN-DPAF-EFDHDSRQWVDRMLDYNV-PGGKLNRGLSVVDSYRLLKEGK-ELTDDEFFLSSALGWC 81 (342)
Q Consensus 6 ~~f~~~~~~l~~~l~~-~~~~-~~~~~~~~~l~~~~~~~~-~~GK~~Rp~l~~~~~~~~~~g~-~~~~~~~~~a~~lA~a 81 (342)
.+|.++++.+++++.. +..+ +......+.+.+++.|.+ .||||+||++|+++++++ ++. ..+. ....++.+|++
T Consensus 92 ~~~~~~~~~v~~~l~~v~~~l~~~~~~~~~~l~~~~~~~~~~gGKriRP~Lvll~a~a~-g~~~g~~~-~~~~~~~lAaa 169 (416)
T PLN02857 92 ISLSELFEPVADDLQQLNDNLQSIVGAENPVLMSAAEQIFGAGGKRMRPALVFLVSRAT-AELAGLKE-LTTEHRRLAEI 169 (416)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHhCCCccHhHHHHHHHHHHh-ccccCCCc-chHHHHHHHHH
Confidence 4566677777777766 3222 222234466888888988 999999999999999998 210 0011 12345789999
Q ss_pred HHHHHHHHHHhhhhcCCCCCCcCcccccccccchhhHhhhHHHHHHHHHHHHHcccCCCchHHHHHHHHHHHHHHHhHHH
Q 019339 82 IEWLQAYFLVLDDIMDGSHTRRGQPCWFRVPKVGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQ 161 (342)
Q Consensus 82 ~EllH~asLihDDI~D~~~~RRg~p~~~~~~g~~~ia~~d~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ 161 (342)
+|+||+||||||||||+|++|||+||+|.+||+. +||+.|+++++.++..+.+.. ..++++.+++++..++.||
T Consensus 170 iEliH~ASLIHDDI~D~s~~RRG~pt~h~~~G~~-~AIlaGD~L~a~A~~~la~~~-----~~~~~~~~s~~~~~l~~Ge 243 (416)
T PLN02857 170 TEMIHTASLIHDDVLDESDMRRGKETVHQLYGTR-VAVLAGDFMFAQSSWYLANLD-----NLEVIKLISQVIKDFASGE 243 (416)
T ss_pred HHHHHHHHHHHCccccCCcccCCCCCccccCCcc-eeeeHHHHHHHHHHHHHHcCC-----cHHHHHHHHHHHHHHHhhH
Confidence 9999999999999999999999999999999987 455555555677788887641 3578899999999999999
Q ss_pred HHhccccccCcccCCCCCHHHHHHHHHcchhhhhhHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCc
Q 019339 162 MIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSP 241 (342)
Q Consensus 162 ~~d~~~~~~~~~~~~~~~~~~y~~~~~~KTg~l~~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DDlld~~~~~ 241 (342)
+.|+.+.... .+++++|++|+.+|||+| |+.+|.+|++++|++++.++.+++||.++|+||||+||++||++++
T Consensus 244 i~q~~~~~~~-----~~s~~~Yl~~i~~KTa~L-~~~a~~~gallaga~~~~~~~l~~fG~~LGiAFQI~DDiLD~~~~~ 317 (416)
T PLN02857 244 IKQASSLFDC-----DVTLDEYLLKSYYKTASL-IAASTKSAAIFSGVDSSVKEQMYEYGKNLGLAFQVVDDILDFTQST 317 (416)
T ss_pred HHHHhcccCC-----CCCHHHHHHHHHHhHHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCH
Confidence 9998765432 468999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred cccCC-cccchhhccchHHHHHHHhhccHHHHHHHHHHhCCCChHhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHhhc
Q 019339 242 EVIGK-VGTDIEDYKCSWLVVKALELCNEEQKKLVHENYGKVDPACVAKVKELYKTLDLEGAFVEYEKESYEKLTKSIEA 320 (342)
Q Consensus 242 ~~~GK-~~~Dl~~gk~Tlp~l~al~~~~~~~~~~l~~~~~~~~~~~~~~i~~li~~~g~~~~~~~~~~~~~~~a~~~l~~ 320 (342)
+.+|| .++||++||+|||++++++. +++.++.+.+.. .++++++++.++++++|++++++++++++.++|++.|+.
T Consensus 318 ~~~GK~~g~DL~eGK~TlPli~al~~-~~~l~~~l~~~~--~~~~~~~~~~~lv~~~Ggie~a~~~a~~~~~~A~~~L~~ 394 (416)
T PLN02857 318 EQLGKPAGSDLAKGNLTAPVIFALEK-EPELREIIESEF--CEEGSLEEAIELVNEGGGIERAQELAKEKADLAIQNLEC 394 (416)
T ss_pred HHhCCCcchhhhcCCccHHHHHHHhc-ChHHHHHHhhcc--CCHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999 89999999999999999997 444444443321 256789999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHhhccC
Q 019339 321 HPTKEVQAVLKSFLAKIYKRQK 342 (342)
Q Consensus 321 lp~~~~~~~L~~l~~~~~~R~~ 342 (342)
+|+++.++.|..+++++++|.+
T Consensus 395 Lp~~~~~~~L~~L~~~~~~R~~ 416 (416)
T PLN02857 395 LPRGAFRSSLEDMVDYNLERIY 416 (416)
T ss_pred CCCCHHHHHHHHHHHHHHhccC
Confidence 9999999999999999999974
No 7
>CHL00151 preA prenyl transferase; Reviewed
Probab=100.00 E-value=5.4e-62 Score=462.49 Aligned_cols=291 Identities=21% Similarity=0.223 Sum_probs=251.5
Q ss_pred HHHHHHhhccc-CCCccchHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCcCccccccc
Q 019339 33 QWVDRMLDYNV-PGGKLNRGLSVVDSYRLLKEGKELTDDEFFLSSALGWCIEWLQAYFLVLDDIMDGSHTRRGQPCWFRV 111 (342)
Q Consensus 33 ~~l~~~~~~~~-~~GK~~Rp~l~~~~~~~~~~g~~~~~~~~~~a~~lA~a~EllH~asLihDDI~D~~~~RRg~p~~~~~ 111 (342)
+.+.+++.|.+ .|||++||.+|+++++++ |+. +.....+..+|+++|++|+||||||||||+|++|||+||+|.+
T Consensus 31 ~~l~~~~~~~~~~gGKr~Rp~L~ll~~~~~-~~~---~~~~~~~~~~A~aiEllH~asLiHDDi~D~s~~RRG~pt~h~~ 106 (323)
T CHL00151 31 PILYAAAKHLFSAGGKRIRPAIVLLVAKAT-GGN---MEIKTSQQRLAEITEIIHTASLVHDDVIDECSIRRGIPTVHKI 106 (323)
T ss_pred hhHHHHHHHHHhcCCccHHHHHHHHHHHHc-CCC---ccccHHHHHHHHHHHHHHHHHHHHcccccCccccCCCccHHHH
Confidence 45888888888 999999999999999998 442 1112235678999999999999999999999999999999999
Q ss_pred ccchhhHhhhHHHHHHHHHHHHHcccCCCchHHHHHHHHHHHHHHHhHHHHHhccccccCcccCCCCCHHHHHHHHHcch
Q 019339 112 PKVGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKT 191 (342)
Q Consensus 112 ~g~~~ia~~d~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~~d~~~~~~~~~~~~~~~~~~y~~~~~~KT 191 (342)
||++ +|++.|+++++.++..+++.. ...+.+.+++++..++.||..|..+... ..+++++|++|+.+||
T Consensus 107 ~G~~-~Ail~GD~l~~~a~~~l~~~~-----~~~~~~~~~~~~~~l~~G~~~~~~~~~~-----~~~~~~~yl~~i~~KT 175 (323)
T CHL00151 107 FGTK-IAVLAGDFLFAQSSWYLANLN-----NLEVVKLISKVITDFAEGEIRQGLVQFD-----TTLSILNYIEKSFYKT 175 (323)
T ss_pred hCCc-chhhhHHHHHHHHHHHHHhCC-----ChHHHHHHHHHHHHHHHHHHHHHhcCCC-----CCCCHHHHHHHHHhHH
Confidence 9997 344444555577788887542 2457788999999999999999876432 1468999999999999
Q ss_pred hhhhhHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCccccCC-cccchhhccchHHHHHHHhhccHH
Q 019339 192 AYYSFYLPVACALLMAGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGK-VGTDIEDYKCSWLVVKALELCNEE 270 (342)
Q Consensus 192 g~l~~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DDlld~~~~~~~~GK-~~~Dl~~gk~Tlp~l~al~~~~~~ 270 (342)
|+| |++||.+|++++|++++.++.+++||.++|+||||+||++|++++++.+|| .|+|+++||+|||++++++. +++
T Consensus 176 a~L-~~~~~~~ga~lag~~~~~~~~l~~~G~~lG~aFQi~DDilD~~~~~~~~GK~~g~Dl~eGk~Tlp~l~al~~-~~~ 253 (323)
T CHL00151 176 ASL-IAASCKAAALLSDADEKDHNDFYLYGKHLGLAFQIIDDVLDITSSTESLGKPIGSDLKNGNLTAPVLFALTQ-NSK 253 (323)
T ss_pred HHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcccChhhhCCCchhhHhcCchHHHHHHHHhc-ChH
Confidence 999 999999999999999999999999999999999999999999999999999 89999999999999999986 444
Q ss_pred HHHHHHHHhCCCChHhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhccC
Q 019339 271 QKKLVHENYGKVDPACVAKVKELYKTLDLEGAFVEYEKESYEKLTKSIEAHPTKEVQAVLKSFLAKIYKRQK 342 (342)
Q Consensus 271 ~~~~l~~~~~~~~~~~~~~i~~li~~~g~~~~~~~~~~~~~~~a~~~l~~lp~~~~~~~L~~l~~~~~~R~~ 342 (342)
.++.+.... .++++++++.+++.++|++++++.+++.|.++|++.|+.+|.++.++.|..+++++++|++
T Consensus 254 ~~~~l~~~~--~~~~~~~~~~~~l~~~g~~~~a~~~a~~~~~~A~~~L~~lp~~~~~~~L~~l~~~~~~R~~ 323 (323)
T CHL00151 254 LAKLIEREF--CETKDISQALQIIKETNGIEKAKDLALEHMQAAIQCLKFLPPSSAKDSLIEIANFIINRLN 323 (323)
T ss_pred HHHHHHHhc--CCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccC
Confidence 444443322 2567889999999999999999999999999999999999999999999999999999975
No 8
>PRK10581 geranyltranstransferase; Provisional
Probab=100.00 E-value=2.8e-57 Score=424.97 Aligned_cols=280 Identities=23% Similarity=0.257 Sum_probs=226.4
Q ss_pred HHHHHHHHHHHhCCCCCCCCcchHHHHHHHhhccc-CCCccchHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHHHHHH
Q 019339 9 IEVYGVLKQELLNDPAFEFDHDSRQWVDRMLDYNV-PGGKLNRGLSVVDSYRLLKEGKELTDDEFFLSSALGWCIEWLQA 87 (342)
Q Consensus 9 ~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~GK~~Rp~l~~~~~~~~~~g~~~~~~~~~~a~~lA~a~EllH~ 87 (342)
......+++.|..... ... ..++.+.+++.|.+ .||||+||+||+++++++ |+ +++ .+.++|+++|++|+
T Consensus 8 ~~~~~~i~~~l~~~~~-~~~-~~~~~l~~~~~~~~~~gGKrlRp~L~l~~~~~~-g~---~~~---~~~~~A~avEliH~ 78 (299)
T PRK10581 8 QACVQQANQALSRFIA-PLP-FQNTPVVEAMQYGALLGGKRLRPFLVYATGQMF-GV---STN---TLDAPAAAVECIHA 78 (299)
T ss_pred HHHHHHHHHHHHHHhh-hcc-cCchHHHHHHHHHHhcCcccHHHHHHHHHHHHh-CC---CHH---HHHHHHHHHHHHHH
Confidence 3455566666554110 011 11244777888877 999999999999999998 33 232 35678999999999
Q ss_pred HHHHhhhh--cCCCCCCcCcccccccccch-hhHhhhHHHHHHHHHHHHHcccCCCc---hHHHHHHHHHHH--HHHHhH
Q 019339 88 YFLVLDDI--MDGSHTRRGQPCWFRVPKVG-MIAANDGVLLRNHISRILKNHFRDKP---YYVDLLDLFNEV--EFQTAS 159 (342)
Q Consensus 88 asLihDDI--~D~~~~RRg~p~~~~~~g~~-~ia~~d~~~l~~~~~~~l~~~~~~~~---~~~~~~~~~~~~--~~~~~~ 159 (342)
|||||||| ||+|++|||+||+|.+||++ +|++||+ +++.++..+.+...+.. ...++++.++.+ ...++.
T Consensus 79 aSLiHDDip~~D~s~~RRG~pt~h~~~G~~~AIl~GD~--L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 156 (299)
T PRK10581 79 YSLIHDDLPAMDDDDLRRGLPTCHVKFGEANAILAGDA--LQTLAFSILSDAPMPEVSDRDRISMISELASASGIAGMCG 156 (299)
T ss_pred HHHHHcCcccccCCCccCCCcChHHHhCcchHHHHHHH--HHHHHHHHHHhCCCccCChHHHHHHHHHHHHhcccchhhH
Confidence 99999999 99999999999999999987 5555555 55778888876432211 123455555553 457999
Q ss_pred HHHHhccccccCcccCCCCCHHHHHHHHHcchhhhhhHHHHHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHHHhhhhhhc
Q 019339 160 GQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAGENL-DKHVEVKDILVQMGIYFQVQDDFLDCF 238 (342)
Q Consensus 160 GQ~~d~~~~~~~~~~~~~~~~~~y~~~~~~KTg~l~~~~~~~~ga~lag~~~-~~~~~l~~~g~~lG~afQi~DDlld~~ 238 (342)
||.+|+.+... .+++++|++|+.+|||+| |++||.+|++++|+++ +.++.+++||.++|+||||+||++|++
T Consensus 157 GQ~ld~~~~~~------~~~~~~y~~i~~~KTa~L-~~~~~~~gailag~~~~~~~~~l~~~g~~lG~aFQI~DDilD~~ 229 (299)
T PRK10581 157 GQALDLEAEGK------QVPLDALERIHRHKTGAL-IRAAVRLGALSAGDKGRRALPVLDRYAESIGLAFQVQDDILDVV 229 (299)
T ss_pred hhHHHHhccCC------CCCHHHHHHHHHHhhHHH-HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 99999987542 468999999999999999 9999999999999864 578999999999999999999999999
Q ss_pred CCccccCC-cccchhhccchHHHHHHHhhccHHHHHHHHHHhCCCChHhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHH
Q 019339 239 GSPEVIGK-VGTDIEDYKCSWLVVKALELCNEEQKKLVHENYGKVDPACVAKVKELYKTLDLEGAFVEYEKESYEKLTKS 317 (342)
Q Consensus 239 ~~~~~~GK-~~~Dl~~gk~Tlp~l~al~~~~~~~~~~l~~~~~~~~~~~~~~i~~li~~~g~~~~~~~~~~~~~~~a~~~ 317 (342)
++++.+|| .|+|+++||+|||++++++ +++.++++|.++|++.
T Consensus 230 g~~~~~GK~~g~Dl~~gk~T~p~l~~~e------------------------------------~a~~~a~~~~~~A~~~ 273 (299)
T PRK10581 230 GDTATLGKRQGADQQLGKSTYPALLGLE------------------------------------QARKKARDLIDDARQS 273 (299)
T ss_pred CChHHHCCCcchhhhcCCCCHHHHHHHH------------------------------------HHHHHHHHHHHHHHHH
Confidence 99999999 8999999999999999764 4556888999999999
Q ss_pred hhcCCChHH-HHHHHHHHHHHhhccC
Q 019339 318 IEAHPTKEV-QAVLKSFLAKIYKRQK 342 (342)
Q Consensus 318 l~~lp~~~~-~~~L~~l~~~~~~R~~ 342 (342)
|+.+|.++. ++.|..+++++++|+|
T Consensus 274 l~~l~~~~~~~~~L~~l~~~~~~R~~ 299 (299)
T PRK10581 274 LDQLAAQSLDTSALEALANYIIQRDK 299 (299)
T ss_pred HHhCcCCchhHHHHHHHHHHHHhccC
Confidence 999997665 7899999999999986
No 9
>cd00685 Trans_IPPS_HT Trans-Isoprenyl Diphosphate Synthases, head-to-tail. These trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) catalyze head-to-tail (HT) (1'-4) condensation reactions. This CD includes all-trans (E)-isoprenyl diphosphate synthases which synthesize various chain length (C10, C15, C20, C25, C30, C35, C40, C45, and C50) linear isoprenyl diphosphates from precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). They catalyze the successive 1'-4 condensation of the 5-carbon IPP to allylic substrates geranyl-, farnesyl-, or geranylgeranyl-diphosphate. Isoprenoid chain elongation reactions proceed via electrophilic alkylations in which a new carbon-carbon single bond is generated through interaction between a highly reactive electron-deficient allylic carbocation and an electron-rich carbon-carbon double bond. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions (DDXX(XX
Probab=100.00 E-value=3.7e-54 Score=397.94 Aligned_cols=254 Identities=32% Similarity=0.459 Sum_probs=227.3
Q ss_pred HHHHHHhhccc-CCCccchHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCcCccccccc
Q 019339 33 QWVDRMLDYNV-PGGKLNRGLSVVDSYRLLKEGKELTDDEFFLSSALGWCIEWLQAYFLVLDDIMDGSHTRRGQPCWFRV 111 (342)
Q Consensus 33 ~~l~~~~~~~~-~~GK~~Rp~l~~~~~~~~~~g~~~~~~~~~~a~~lA~a~EllH~asLihDDI~D~~~~RRg~p~~~~~ 111 (342)
+.+.+++.|.+ .+||++||.+++++++++ |+. + ...+..+|+++|++|+||||||||+|+|+.|||+||+|.+
T Consensus 4 ~~l~~~~~~~~~~~GK~~Rp~l~~~~~~~~-g~~---~--~~~~~~la~aiEllh~asLIhDDI~D~s~~RRG~p~~~~~ 77 (259)
T cd00685 4 ELLREALRYLLLAGGKRLRPLLVLLAARAL-GGP---E--LEAALRLAAAIELLHTASLVHDDVMDNSDLRRGKPTVHKV 77 (259)
T ss_pred hHHHHHHHHHHHcCCccHhHHHHHHHHHHh-CCC---c--hHHHHHHHHHHHHHHHHHHHHhhhccCCcccCCCCcHHHH
Confidence 55788888886 999999999999999999 442 2 1246789999999999999999999999999999999999
Q ss_pred ccchhhHhhhHHHHHHHHHHHHHcccCCCchHHHHHHHHHHHHHHHhHHHHHhccccccCcccCCCCCHHHHHHHHHcch
Q 019339 112 PKVGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKT 191 (342)
Q Consensus 112 ~g~~~ia~~d~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~~d~~~~~~~~~~~~~~~~~~y~~~~~~KT 191 (342)
||+. .|+++|+++++.++..+++...+ ...++++.+++.+..++.||++|+.+..+ ..+++++|++|+.+||
T Consensus 78 ~G~~-~Ail~gd~l~~~a~~~l~~~~~~--~~~~~~~~~~~~~~~~~~GQ~~d~~~~~~-----~~~~~~~y~~~~~~KT 149 (259)
T cd00685 78 FGNA-TAILAGDYLLARAFELLARLGNP--YYPRALELFSEAILELVEGQLLDLLSEYD-----TDVTEEEYLRIIRLKT 149 (259)
T ss_pred hCcc-cHHHHHHHHHHHHHHHHHhCCCc--cHHHHHHHHHHHHHHHHHHHHHHHHccCC-----CCCCHHHHHHHHHHhH
Confidence 9987 56777777778888998875322 45789999999999999999999998653 2579999999999999
Q ss_pred hhhhhHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCccccCC-cccchhhccchHHHHHHHhhccHH
Q 019339 192 AYYSFYLPVACALLMAGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGK-VGTDIEDYKCSWLVVKALELCNEE 270 (342)
Q Consensus 192 g~l~~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DDlld~~~~~~~~GK-~~~Dl~~gk~Tlp~l~al~~~~~~ 270 (342)
|+| |.++|.+|+++++++++.++.+++||.++|++|||+||++|++++++.+|| .++|+++||+|||+++++
T Consensus 150 ~~l-~~~~~~~~a~l~~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~gK~~~~Di~~gk~T~~~~~~l------ 222 (259)
T cd00685 150 AAL-FAAAPLLGALLAGADEEEAEALKRFGRNLGLAFQIQDDILDLFGDPETLGKPVGSDLREGKCTLPVLLAL------ 222 (259)
T ss_pred HHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCChHHHCCCcchHHHcCCchHHHHHHH------
Confidence 999 899999999999999999999999999999999999999999999999999 899999999999999999
Q ss_pred HHHHHHHHhCCCChHhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhc
Q 019339 271 QKKLVHENYGKVDPACVAKVKELYKTLDLEGAFVEYEKESYEKLTKSIEAHPTKEVQAVLKSFLAKIYKR 340 (342)
Q Consensus 271 ~~~~l~~~~~~~~~~~~~~i~~li~~~g~~~~~~~~~~~~~~~a~~~l~~lp~~~~~~~L~~l~~~~~~R 340 (342)
++.++.|.++|...|+.+|.+..++.|..+++++++|
T Consensus 223 ---------------------------------~~~~~~~~~~a~~~l~~~~~~~~~~~l~~~~~~~~~r 259 (259)
T cd00685 223 ---------------------------------RELAREYEEKALEALKALPESPAREALRALADFILER 259 (259)
T ss_pred ---------------------------------HHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcC
Confidence 4578888899999999999877789999999999987
No 10
>PF00348 polyprenyl_synt: Polyprenyl synthetase; InterPro: IPR000092 A variety of isoprenoid compounds are synthesized by various organisms. For example in eukaryotes the isoprenoid biosynthetic pathway is responsible for the synthesis of a variety of end products including cholesterol, dolichol, ubiquinone or coenzyme Q. In bacteria this pathway leads to the synthesis of isopentenyl tRNA, isoprenoid quinones, and sugar carrier lipids. Among the enzymes that participate in that pathway, are a number of polyprenyl synthetase enzymes which catalyze a 1'4-condensation between 5 carbon isoprene units. It has been shown [, , , , ] that all the above enzymes share some regions of sequence similarity. Two of these regions are rich in aspartic-acid residues and could be involved in the catalytic mechanism and/or the binding of the substrates.; GO: 0008299 isoprenoid biosynthetic process; PDB: 3AQC_B 3AQB_D 3Q1O_C 3LLW_B 3EFQ_A 3EGT_A 3DYG_A 2P1C_A 2OGD_A 2EWG_B ....
Probab=100.00 E-value=1.8e-54 Score=400.20 Aligned_cols=256 Identities=28% Similarity=0.368 Sum_probs=214.5
Q ss_pred HHHHHhhcccCCCccchHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCcCccccccccc
Q 019339 34 WVDRMLDYNVPGGKLNRGLSVVDSYRLLKEGKELTDDEFFLSSALGWCIEWLQAYFLVLDDIMDGSHTRRGQPCWFRVPK 113 (342)
Q Consensus 34 ~l~~~~~~~~~~GK~~Rp~l~~~~~~~~~~g~~~~~~~~~~a~~lA~a~EllH~asLihDDI~D~~~~RRg~p~~~~~~g 113 (342)
|++++.+|+..|||++||.+|+++++++ |+ ....+..+|+++|++|+||||||||+|+|++|||+||+|.+||
T Consensus 1 ~~~~~~~~~~~~GK~~Rp~l~~~~~~~~-~~------~~~~~~~~a~avEliH~asLIhDDI~D~s~~RRG~pt~~~~~G 73 (260)
T PF00348_consen 1 WLEPARYYILRGGKRIRPLLVLLAAEAL-GG------DPEKAIPLAAAVELIHAASLIHDDIIDNSDLRRGKPTVHKKFG 73 (260)
T ss_dssp HHHHHHHHHHSSSCHHHHHHHHHHHHHT-TC------HHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEETTEECHHHHHH
T ss_pred ChHHHHHHhhCCCccHHHHHHHHHHHHh-CC------CHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCCCcccccccc
Confidence 6788888888999999999999999999 33 2335778999999999999999999999999999999999999
Q ss_pred chhhHhhhHHHHHHHHHHHHHcccC--CCchHHHHHHHHHHHHHHHhHHHHHhccccccCcccCCCCCHHHHHHHHHcch
Q 019339 114 VGMIAANDGVLLRNHISRILKNHFR--DKPYYVDLLDLFNEVEFQTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKT 191 (342)
Q Consensus 114 ~~~ia~~d~~~l~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~GQ~~d~~~~~~~~~~~~~~~~~~y~~~~~~KT 191 (342)
.. .+++.|+++++.++..+.+... +......+.+.+...+.....||..|+.+... .+++++|++|+.+||
T Consensus 74 ~~-~Ail~gd~ll~~a~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~q~~d~~~~~~------~~~~~~y~~i~~~KT 146 (260)
T PF00348_consen 74 NA-IAILAGDYLLALAFELLARLGHFDPSERVLRILELFIEALIEGEIGQALDLANEDK------DPTEEEYLEIIRLKT 146 (260)
T ss_dssp HH-HHHHHHHHHHHHHHHHHHHHCHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS------STSHHHHHHHHHHHT
T ss_pred cc-chhhhchHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhcccceeehhhccccccc------cccHHHHHHHHhhcc
Confidence 87 4555555555777888876631 12234566666777777778889999987643 469999999999999
Q ss_pred hhhhhHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCccccCC-cccchhhccchHHHHHHHhhccHH
Q 019339 192 AYYSFYLPVACALLMAGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGK-VGTDIEDYKCSWLVVKALELCNEE 270 (342)
Q Consensus 192 g~l~~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DDlld~~~~~~~~GK-~~~Dl~~gk~Tlp~l~al~~~~~~ 270 (342)
|+| |++||++|++++|++++.++.+++||.++|+||||+||++|++++++.+|| .++||++||+|||++++++.++++
T Consensus 147 g~l-~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~~d~~~~~~~~gK~~~~Dl~~gk~Tlp~~~al~~~~~~ 225 (260)
T PF00348_consen 147 GSL-FALACQLGAILAGADEEQIEALREFGRHLGIAFQIRDDLLDLFGDEEELGKPVGSDLKEGKPTLPVLHALERAREE 225 (260)
T ss_dssp HHH-HHHHHHHHHHHTTSGHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHSSTTTHHHHTTTSSHHHHHHHHHHHHH
T ss_pred hHH-HHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhhhhhhhhccCcHHHhcccchhHHhcCcccHHHHHHHHhCHHH
Confidence 999 999999999999999999999999999999999999999999999999999 799999999999999999998777
Q ss_pred HHHHHHHHhCCCChHhHHHHHHHHHHcChHHHHHHHH
Q 019339 271 QKKLVHENYGKVDPACVAKVKELYKTLDLEGAFVEYE 307 (342)
Q Consensus 271 ~~~~l~~~~~~~~~~~~~~i~~li~~~g~~~~~~~~~ 307 (342)
.++.+.+..++. +.+.+.+.++.++.++++.+++
T Consensus 226 ~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 259 (260)
T PF00348_consen 226 LRELLQEAYGKE---DSEEALEIIAQTGALEYTRKFM 259 (260)
T ss_dssp HHHHHHHHHHHS---HHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHccc---chHHHHHHHHHHHHHHHHHhhc
Confidence 777777765433 3455666667777777666554
No 11
>KOG0711 consensus Polyprenyl synthetase [Coenzyme transport and metabolism]
Probab=100.00 E-value=3.6e-52 Score=377.30 Aligned_cols=336 Identities=56% Similarity=0.914 Sum_probs=307.0
Q ss_pred hHHHHHHHHHHHHHHHhCC-CCCCCCcchHHHHHHHhhcccCCCccchHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHH
Q 019339 4 LKSRFIEVYGVLKQELLND-PAFEFDHDSRQWVDRMLDYNVPGGKLNRGLSVVDSYRLLKEGKELTDDEFFLSSALGWCI 82 (342)
Q Consensus 4 ~~~~f~~~~~~l~~~l~~~-~~~~~~~~~~~~l~~~~~~~~~~GK~~Rp~l~~~~~~~~~~g~~~~~~~~~~a~~lA~a~ 82 (342)
++..|.++|+.+-++|... .....+....+|+.+.++|+..|||..|...|+.+.+++.++.+.+++....+..++|++
T Consensus 8 ~k~~f~~~f~~~vr~i~~~~~~~~~~~da~~~~~~~L~yN~~GGK~nRgl~vv~s~~~L~~~~~l~~~~~~~a~~lGw~v 87 (347)
T KOG0711|consen 8 EKQDFLQVFPVLVRVLTEDLMAHGESGDATEWLKEVLDYNVIGGKLNRGLSVVDSFKALVEPRKLDEEELQLALILGWCV 87 (347)
T ss_pred HHHHHHHHHHHHHHHHHHhhhccCCChHHHHHHHHHHhccCcccccccchhHHHHHHHhcCccCCCHHHHHHHHHHHHHH
Confidence 5789999999999999983 344456678899999999999999999999999999999644567788888999999999
Q ss_pred HHHHHHHHHhhhhcCCCCCCcCcccccccccchhhHhhhHHHHHHHHHHHHHcccCCCchHHHHHHHHHHHHHHHhHHHH
Q 019339 83 EWLQAYFLVLDDIMDGSHTRRGQPCWFRVPKVGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQM 162 (342)
Q Consensus 83 EllH~asLihDDI~D~~~~RRg~p~~~~~~g~~~ia~~d~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~ 162 (342)
|+++...||-|||||+|.+|||+||||.+.|+|..||||++++-+..+.+|++.++..+...++++.+.+....+..||.
T Consensus 88 ElLQaffLiaDDIMDnS~tRRGqpCWy~~~gVG~~AINDA~lLea~Iy~lLkk~fr~~~~y~~l~elf~ev~f~T~lGdl 167 (347)
T KOG0711|consen 88 ELLQAFFLVADDIMDNSKTRRGQPCWYQKPGVGLDAINDAFLLEAAIYKLLKKHFRNIYCYVDLVELFHEVTFQTELGDL 167 (347)
T ss_pred HHHHHHHHHhhhhhccccccCCCcceeecCCcchhhhhHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHHHHHhhhcc
Confidence 99999999999999999999999999999999978999999999999999999988888889999999999999999955
Q ss_pred HhccccccCcccCCCCCHHHHHHHHHcchhhhhhHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCc
Q 019339 163 IDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAGE-NLDKHVEVKDILVQMGIYFQVQDDFLDCFGSP 241 (342)
Q Consensus 163 ~d~~~~~~~~~~~~~~~~~~y~~~~~~KTg~l~~~~~~~~ga~lag~-~~~~~~~l~~~g~~lG~afQi~DDlld~~~~~ 241 (342)
++ ..+++.+++..|++.|..||..|||.|||.+|.++|..++|. +.+.......+...+|..||++||++|++|||
T Consensus 168 lt---~~~~~~~ls~fsl~~y~~Iv~~KTa~YsFYLPialAl~~ag~~~~k~~~~~k~v~~~lg~~FQvQDDYLd~fgDp 244 (347)
T KOG0711|consen 168 LT---TPEGNKDLSKFSLEKYVFIVEYKTAYYSFYLPVALALLLAGIANLKEHACEKKVLLLLGEYFQVQDDYLDCFGDP 244 (347)
T ss_pred cc---CcccchhHhhhhHHHHHHHhhccccceeeecHHHHHHHHhhhhhHHHhhhHHHHHHHHHHHHhcchHHHHhcCCh
Confidence 44 445667788999999999999999999999999999999984 66677889999999999999999999999999
Q ss_pred cccCCcccchhhccchHHHHHHHhhccHHHHHHHHHHhCCCChHhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHhhcC
Q 019339 242 EVIGKVGTDIEDYKCSWLVVKALELCNEEQKKLVHENYGKVDPACVAKVKELYKTLDLEGAFVEYEKESYEKLTKSIEAH 321 (342)
Q Consensus 242 ~~~GK~~~Dl~~gk~Tlp~l~al~~~~~~~~~~l~~~~~~~~~~~~~~i~~li~~~g~~~~~~~~~~~~~~~a~~~l~~l 321 (342)
+.+||.|.||.++|+||.+++|++++++++.+.+...+++.+++.++.++.++++.+..+....+-.....+....|+.+
T Consensus 245 ~vtgkiGtDIqDnKCsWlv~~al~~~~~eq~~~l~~~yg~~~~~~v~~vk~ly~el~l~~~f~~yE~~~~~~Ik~~I~~~ 324 (347)
T KOG0711|consen 245 EVTGKIGTDIQDNKCSWLVVKALQRASAEQYKILFENYGKPEAEAVAKVKALYKELHLPALFIEYEEGSYKKIKKLISQV 324 (347)
T ss_pred hhcCCCCCccccCceeeehHHHHhhcCHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHhhhhHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999888888888889999999988
Q ss_pred CC--hHHHHHHHHHHHHHhhccC
Q 019339 322 PT--KEVQAVLKSFLAKIYKRQK 342 (342)
Q Consensus 322 p~--~~~~~~L~~l~~~~~~R~~ 342 (342)
+. ++.+..+..+++.+++|++
T Consensus 325 ~~~~~~~~~v~t~fl~kiykr~k 347 (347)
T KOG0711|consen 325 DEDTGVKVKVGTSFLNKIYKRSK 347 (347)
T ss_pred cCCCcchhhhHHHHHHHHHhhcC
Confidence 64 4667788889999999975
No 12
>KOG0776 consensus Geranylgeranyl pyrophosphate synthase/Polyprenyl synthetase [Coenzyme transport and metabolism]
Probab=100.00 E-value=1.9e-52 Score=392.66 Aligned_cols=288 Identities=22% Similarity=0.242 Sum_probs=247.9
Q ss_pred hHHHHHHHhhccc-CCCccchHHHHHHHHHHhhC-CCCCChHHHHHHHHHHHHHHHHHHHHHHhhhh--cCCCCCCcCcc
Q 019339 31 SRQWVDRMLDYNV-PGGKLNRGLSVVDSYRLLKE-GKELTDDEFFLSSALGWCIEWLQAYFLVLDDI--MDGSHTRRGQP 106 (342)
Q Consensus 31 ~~~~l~~~~~~~~-~~GK~~Rp~l~~~~~~~~~~-g~~~~~~~~~~a~~lA~a~EllH~asLihDDI--~D~~~~RRg~p 106 (342)
.+.++...+.|.+ .+||+.||.+|+.+|+.+ + | . ...++.+|+++||||++||||||| ||++++|||+|
T Consensus 91 ~~~~i~~a~ry~~la~gKr~rP~l~~~~~e~~-~~g--~----~~~q~~~A~i~EMIHtaSLIHDDv~~mD~~d~RRGkp 163 (384)
T KOG0776|consen 91 EPLLISEAMRYLLLAGGKRVRPLLCLAACELV-GSG--D----ESSQRSLAEIVEMIHTASLIHDDVPCMDDADLRRGKP 163 (384)
T ss_pred ccchhHHHHHHHHHhcccccCchhhhhHHHhc-ccc--c----cHHHHHHHHHHHHHHHHHHHhcCcccccccccccCCC
Confidence 3567888888877 899999999999999999 4 4 1 224678999999999999999999 99999999999
Q ss_pred cccccccch-hhHhhhHHHHHHHHHHHHHcccCCCchHHHHHHHHHHHHHHHhHHHHHhccccccCcccCCCCCHHHHHH
Q 019339 107 CWFRVPKVG-MIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEGEKDLSKYSLPLHRR 185 (342)
Q Consensus 107 ~~~~~~g~~-~ia~~d~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~~d~~~~~~~~~~~~~~~~~~y~~ 185 (342)
|.|..||+. ++++||+ +++.|+..++... ...+.+.++.++.+++.|++.+...... ..+.++..++.|+.
T Consensus 164 t~h~vfG~k~AvLaGD~--LLa~A~~~la~l~-----n~~v~elm~~aI~dLv~ge~~~~~~~~~-~~d~~~~~~e~~e~ 235 (384)
T KOG0776|consen 164 TNHKVFGNKMAVLAGDA--LLALASEHLASLE-----NPVVVELMASAIADLVRGEFTQGLVAGE-GLDLDDVGLEYLEF 235 (384)
T ss_pred CcchhhcchhhhhhhHH--HHHHHHHHHHhcc-----CchHHHHHHHHHHHHHHhhhhccccccc-ccccCCcchHHHHH
Confidence 999999998 5555555 5578888888763 2378899999999999999999887642 23445668999999
Q ss_pred HHHcchhhhhhHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCccccCC-cccchhhccchHHHHHHH
Q 019339 186 IVQYKTAYYSFYLPVACALLMAGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGK-VGTDIEDYKCSWLVVKAL 264 (342)
Q Consensus 186 ~~~~KTg~l~~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DDlld~~~~~~~~GK-~~~Dl~~gk~Tlp~l~al 264 (342)
+..+|||+| ++.+|++|++++|.+++.++.+++||+++|++||+.||++|++...+++|| .|.|+..|+.|+|+++++
T Consensus 236 ~~~~KTAsL-la~Sc~~~aILgg~s~ev~e~~~~yGR~lGL~fQvvDDildftkss~elGK~ag~Dl~~g~lT~P~Lf~~ 314 (384)
T KOG0776|consen 236 KTLLKTASL-LAKSCVAAAILGGGSEEVIEAAFEYGRCLGLAFQVVDDILDFTKSSEELGKTAGKDLKAGKLTAPVLFAL 314 (384)
T ss_pred HHHHHHHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhcccCcccchhhcCcchhhhhhhccccccchhhh
Confidence 999999999 999999999999999999999999999999999999999999999999999 899999999999999999
Q ss_pred hhccHHHHHHHHHHhCCCChHhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhc
Q 019339 265 ELCNEEQKKLVHENYGKVDPACVAKVKELYKTLDLEGAFVEYEKESYEKLTKSIEAHPTKEVQAVLKSFLAKIYKR 340 (342)
Q Consensus 265 ~~~~~~~~~~l~~~~~~~~~~~~~~i~~li~~~g~~~~~~~~~~~~~~~a~~~l~~lp~~~~~~~L~~l~~~~~~R 340 (342)
++ .|+.++.|.+-+.. +.+.....+.+. ++..+..++++|.++|++.|+.+|+++.|+.|+.++..++.|
T Consensus 315 e~-~pe~~e~l~~~~~e--~~~~~~~~k~v~---~v~~a~~la~~~~~~Al~~l~~~p~s~ar~aL~~l~~~~~~r 384 (384)
T KOG0776|consen 315 EK-SPELREKLEREFSE--PLDGFDADKAVP---GVALAKYLARRHNNKALEALQSLPRSEARSALENLVLAVLTR 384 (384)
T ss_pred hh-ChHHHHHHHHhccc--cchhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhcC
Confidence 99 45677777664433 334444444444 677889999999999999999999999999999999999887
No 13
>cd00867 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases. Trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) of class 1 isoprenoid biosynthesis enzymes which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate. These enzymes produce a myriad of precursors for such end products as steroids, cholesterol, sesquiterpenes, heme, carotenoids, retinoids, diterpenes, ubiquinone, and archaeal ether linked lipids; and are widely distributed among archaea, bacteria, and eukareya. The enzymes in this family share the same 'isoprenoid synthase fold' and include the head-to-tail (HT) IPPS which catalyze the successive 1'-4 condensation of the 5-carbon IPP to the growing isoprene chain to form linear, all-trans, C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates
Probab=100.00 E-value=4.6e-40 Score=299.41 Aligned_cols=233 Identities=30% Similarity=0.333 Sum_probs=198.8
Q ss_pred chHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCcCccccccc-ccchhhHhhhHHHHHH
Q 019339 49 NRGLSVVDSYRLLKEGKELTDDEFFLSSALGWCIEWLQAYFLVLDDIMDGSHTRRGQPCWFRV-PKVGMIAANDGVLLRN 127 (342)
Q Consensus 49 ~Rp~l~~~~~~~~~~g~~~~~~~~~~a~~lA~a~EllH~asLihDDI~D~~~~RRg~p~~~~~-~g~~~ia~~d~~~l~~ 127 (342)
+||.+++++++++ |+ ++ ..++.+++++|++|++++|||||+|++..|||+|++|.. ||.. ++++.++++..
T Consensus 1 ~r~~~~~~~~~~~-~~---~~---~~~~~~a~ave~l~~~~li~DDI~D~~~~rrg~~~~~~~~~g~~-~ai~~gd~l~~ 72 (236)
T cd00867 1 SRPLLVLLLARAL-GG---DL---EAALRLAAAVELLHAASLVHDDIVDDSDLRRGKPTAHLRRFGNA-LAILAGDYLLA 72 (236)
T ss_pred CcHHHHHHHHHHc-CC---CH---HHHHHHHHHHHHHHHHHHHHcccccCCccCCCCccHhHHhhCHh-HHHHHHHHHHH
Confidence 5999999999999 44 22 246788999999999999999999999999999999999 9976 56677777777
Q ss_pred HHHHHHHcccCCCchHHHHHHHHHHHHHHHhHHHHHhccccccCcccCCCCCHHHHHHHHHcchhhhhhHHHHHHHHHHc
Q 019339 128 HISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMA 207 (342)
Q Consensus 128 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~~d~~~~~~~~~~~~~~~~~~y~~~~~~KTg~l~~~~~~~~ga~la 207 (342)
.++..+.+.. ..++.+.+++.+..++.||..|+.+..+ ..+|+++|++++++|||.+ |..+|.++++++
T Consensus 73 ~a~~~l~~~~-----~~~~~~~~~~~~~~~~~Gq~~Dl~~~~~-----~~~t~~~y~~~~~~Kta~l-~~~~~~~~~~~~ 141 (236)
T cd00867 73 RAFQLLARLG-----YPRALELFAEALRELLEGQALDLEFERD-----TYETLDEYLEYCRYKTAGL-VGLLCLLGAGLS 141 (236)
T ss_pred HHHHHHHhCC-----hHHHHHHHHHHHHHHHHHHHHHHHhccC-----CCCCHHHHHHHHHhccHHH-HHHHHHHHHHHc
Confidence 7787777642 4677888999999999999999988643 1469999999999999999 889999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCccccCCcccchhhccchHHHHHHHhhccHHHHHHHHHHhCCCChHhH
Q 019339 208 GENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVGTDIEDYKCSWLVVKALELCNEEQKKLVHENYGKVDPACV 287 (342)
Q Consensus 208 g~~~~~~~~l~~~g~~lG~afQi~DDlld~~~~~~~~GK~~~Dl~~gk~Tlp~l~al~~~~~~~~~~l~~~~~~~~~~~~ 287 (342)
+.+++..+.+++||.++|+||||.||++|++++.+.+||.++|+++||+|||++++
T Consensus 142 ~~~~~~~~~~~~~~~~lG~a~Qi~dd~~D~~~d~~~~gk~~~D~~~gr~tlp~~~~------------------------ 197 (236)
T cd00867 142 GADDEQAEALKDYGRALGLAFQLTDDLLDVFGDAEELGKVGSDLREGRITLPVILA------------------------ 197 (236)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHhccccCChHHHCccHHHHHcCCchHHHHHH------------------------
Confidence 99888899999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHcChHHHHHHHHHHHHHHHHHHhhcCCCh--HHHHHHHHHHHHHhhc
Q 019339 288 AKVKELYKTLDLEGAFVEYEKESYEKLTKSIEAHPTK--EVQAVLKSFLAKIYKR 340 (342)
Q Consensus 288 ~~i~~li~~~g~~~~~~~~~~~~~~~a~~~l~~lp~~--~~~~~L~~l~~~~~~R 340 (342)
.+.+..+.+++.+.++.+++. ..+..+..++..+++|
T Consensus 198 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 236 (236)
T cd00867 198 ----------------RERAAEYAEEAYAALEALPPSLPRARRALIALADFLYRR 236 (236)
T ss_pred ----------------HHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhC
Confidence 334455556666677766543 3578888888888776
No 14
>KOG0777 consensus Geranylgeranyl pyrophosphate synthase/Polyprenyl synthetase [Coenzyme transport and metabolism]
Probab=100.00 E-value=9.4e-39 Score=277.61 Aligned_cols=277 Identities=18% Similarity=0.192 Sum_probs=231.9
Q ss_pred chHHHHHHHhhccc-CCCccchHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCcCcccc
Q 019339 30 DSRQWVDRMLDYNV-PGGKLNRGLSVVDSYRLLKEGKELTDDEFFLSSALGWCIEWLQAYFLVLDDIMDGSHTRRGQPCW 108 (342)
Q Consensus 30 ~~~~~l~~~~~~~~-~~GK~~Rp~l~~~~~~~~~~g~~~~~~~~~~a~~lA~a~EllH~asLihDDI~D~~~~RRg~p~~ 108 (342)
.....+.+++.|+. .+||..|.-|.+...+++ . +|.+.. ..+..++|++|++||.+|||.|+|++|||.|+.
T Consensus 18 ~~~~ill~Py~yilq~PGKqfR~~L~~afNhwl--~--~P~dkL---aii~~ivemLHNsSLLIDDIEDNs~LRRG~pva 90 (322)
T KOG0777|consen 18 QNESILLKPYNYILQKPGKQFRLNLIVAFNHWL--N--LPKDKL---AIISQIVEMLHNSSLLIDDIEDNSPLRRGQPVA 90 (322)
T ss_pred HHHHHHhchHHHHHhCchHHHHHHHHHHHHHHH--h--CCHHHH---HHHHHHHHHHhccceeeccccccchhhcCCcch
Confidence 34466788999998 999999999999999998 3 566553 246789999999999999999999999999999
Q ss_pred cccccchhhHhhhHHHHHHHHHHHHHcccCCCchHHHHHHHHHHHHHHHhHHHHHhccccccCcccCCCCCHHHHHHHHH
Q 019339 109 FRVPKVGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQ 188 (342)
Q Consensus 109 ~~~~g~~~ia~~d~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~~d~~~~~~~~~~~~~~~~~~y~~~~~ 188 (342)
|.+||+. ..+|.+.+++..+.+.+..+ + .++...+|.+.+..++.||.+|+.|+..- .+|++++|..|+.
T Consensus 91 HsIyGvp-StINtANY~yFlalekV~qL--d---hP~a~kifteqLleLHrGQGldIYWRD~~----tcPtee~Yk~Mv~ 160 (322)
T KOG0777|consen 91 HSIYGVP-STINTANYMYFLALEKVSQL--D---HPNAIKIFTEQLLELHRGQGLDIYWRDFL----TCPTEEMYKNMVM 160 (322)
T ss_pred hhhccCc-chhhhhHHHHHHHHHHHHhc--C---CchHHHHHHHHHHHHhcCCCcceeeeccC----cCCCHHHHHHHHH
Confidence 9999997 36888888776666666654 2 25788999999999999999999998653 5899999999999
Q ss_pred cchhhhhhHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCccccCC-cccchhhccchHHHHHHHhhc
Q 019339 189 YKTAYYSFYLPVACALLMAGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGK-VGTDIEDYKCSWLVVKALELC 267 (342)
Q Consensus 189 ~KTg~l~~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DDlld~~~~~~~~GK-~~~Dl~~gk~Tlp~l~al~~~ 267 (342)
.|||-| |.++.++.-..+... +.+..+-.-+|+.|||+||++++-..+..-.| .++|+.|||.++|+++|+..
T Consensus 161 ~KTGGL-F~La~rLMqlfS~~k----edl~pl~n~LGl~fQIRDDY~NL~~keysenKsFaEDlTEGKfsFP~iHA~~t- 234 (322)
T KOG0777|consen 161 NKTGGL-FRLALRLMQLFSHHK----EDLVPLINLLGLIFQIRDDYLNLKDKEYSENKSFAEDLTEGKFSFPIIHALKT- 234 (322)
T ss_pred HhcccH-HHHHHHHHHHHHhcc----hhHHHHHHHHhHhhhhhhhhccchhhhhhcccchhhhhccCccCCcchhhhhc-
Confidence 999999 999999988887554 44677888899999999999999877777789 89999999999999999965
Q ss_pred cHHHHHHHHHHhCCCC-hHhH-HHHHHHHHHcChHHHHHHHHHHHHHHHHHHhhcCCChHHHHHH
Q 019339 268 NEEQKKLVHENYGKVD-PACV-AKVKELYKTLDLEGAFVEYEKESYEKLTKSIEAHPTKEVQAVL 330 (342)
Q Consensus 268 ~~~~~~~l~~~~~~~~-~~~~-~~i~~li~~~g~~~~~~~~~~~~~~~a~~~l~~lp~~~~~~~L 330 (342)
.++.. .+..++.+.+ ..++ ..+..++++.|+.++++...++...+|...++....++.-..|
T Consensus 235 ~~q~~-Qvl~ILrqRT~didiKkyci~~LEd~gSf~YTrn~l~~L~a~a~~~i~~~g~Npyl~~L 298 (322)
T KOG0777|consen 235 KGQTE-QVLRILRQRTSDIDIKKYCIQILEDTGSFAYTRNFLNQLVAEARSMIKNDGENPYLPDL 298 (322)
T ss_pred CCchH-HHHHHHHHhhccchHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHhcCCCcchHHH
Confidence 33333 3556666553 3333 5799999999999999999999999999999998776654433
No 15
>cd00385 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzymes, Class 1. Superfamily of trans-isoprenyl diphosphate synthases (IPPS) and class I terpene cyclases which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate. These enzymes produce a myriad of precursors for such end products as steroids, cholesterol, sesquiterpenes, heme, carotenoids, retinoids, and diterpenes; and are widely distributed among archaea, bacteria, and eukaryota.The enzymes in this superfamily share the same 'isoprenoid synthase fold' and include several subgroups. The head-to-tail (HT) IPPS catalyze the successive 1'-4 condensation of the 5-carbon IPP to the growing isoprene chain to form linear, all-trans, C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates. Cyclic monoter
Probab=99.88 E-value=2e-20 Score=167.64 Aligned_cols=223 Identities=25% Similarity=0.219 Sum_probs=173.0
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCCCCCcCccccccc---ccchhhHhhhHHHHHHHHHHHHHcccCCCchHHHHHHHHHHH
Q 019339 77 ALGWCIEWLQAYFLVLDDIMDGSHTRRGQPCWFRV---PKVGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEV 153 (342)
Q Consensus 77 ~lA~a~EllH~asLihDDI~D~~~~RRg~p~~~~~---~g~~~ia~~d~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 153 (342)
.++.+++.+|+++++||||+|++..|+|.|+++.. +|.. .+++.+..+...++..+.... .......+.+.
T Consensus 14 ~~~~~~~~~~~~~~~~DDi~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~ 87 (243)
T cd00385 14 RLRAAVEKLHAASLVHDDIVDDSGTRRGLPTAHLAVAIDGLP-EAILAGDLLLADAFEELAREG-----SPEALEILAEA 87 (243)
T ss_pred HHHHHHHHHHHHHHHHhhcccCCCCCCCchhhhhhHHhcCch-HHHHHHHHHHHHHHHHHHhCC-----CHHHHHHHHHH
Confidence 46778999999999999999999999999999987 7765 455555555555566655432 15677888899
Q ss_pred HHHHhHHHHHhccccccCcccCCCCCHHHHHHHHHcchhhhhhHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhh
Q 019339 154 EFQTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAGENLDKHVEVKDILVQMGIYFQVQDD 233 (342)
Q Consensus 154 ~~~~~~GQ~~d~~~~~~~~~~~~~~~~~~y~~~~~~KTg~l~~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD 233 (342)
...++.||..|+.+... ..++.++|.++...|||.+ +...+..++...+.+......+..++.++|++||+.||
T Consensus 88 ~~~~~~g~~~d~~~~~~-----~~~t~~ey~~~~~~~t~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ql~nD 161 (243)
T cd00385 88 LLDLLEGQLLDLKWRRE-----YVPTLEEYLEYCRYKTAGL-VGALCLLGAGLSGGEAELLEALRKLGRALGLAFQLTND 161 (243)
T ss_pred HHHHHHHHHHHHHhccC-----CCCCHHHHHHHHHHhHHHH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998753 1479999999999999888 77888888888777777788999999999999999999
Q ss_pred hhhhcCCccccCCcccchhhccchHHHHHHHhhccHHHHHHHHHHhCCCChHhHHHHHHHHHHcChHHHHHHHHHHHHHH
Q 019339 234 FLDCFGSPEVIGKVGTDIEDYKCSWLVVKALELCNEEQKKLVHENYGKVDPACVAKVKELYKTLDLEGAFVEYEKESYEK 313 (342)
Q Consensus 234 lld~~~~~~~~GK~~~Dl~~gk~Tlp~l~al~~~~~~~~~~l~~~~~~~~~~~~~~i~~li~~~g~~~~~~~~~~~~~~~ 313 (342)
+.|+..+... .+|+.|+|.+++.+...+.+... .++..+..+.+...+..+.++
T Consensus 162 l~~~~~e~~~--------~~~~~~l~~~~~~~~~~~~~~~~------------------~~~~~~~~~~a~~~~~~~~~~ 215 (243)
T cd00385 162 LLDYEGDAER--------GEGKCTLPVLYALEYGVPAEDLL------------------LVEKSGSLEEALEELAKLAEE 215 (243)
T ss_pred HHhccCCHHH--------hCCchHHHHHHHHHhCChhhHHH------------------HHHHCChHHHHHHHHHHHHHH
Confidence 9999876432 04899999999999865432211 566667777777778888888
Q ss_pred HHHHhhcCCCh--HHHHHHHHHHHHH
Q 019339 314 LTKSIEAHPTK--EVQAVLKSFLAKI 337 (342)
Q Consensus 314 a~~~l~~lp~~--~~~~~L~~l~~~~ 337 (342)
+++.+..+... .....+...+..+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (243)
T cd00385 216 ALKELNELILSLPDVPRALLALALNL 241 (243)
T ss_pred HHHHHhcCCCCcHHHHHHHHHHHHHH
Confidence 88777776443 3445555555444
No 16
>cd00683 Trans_IPPS_HH Trans-Isoprenyl Diphosphate Synthases, head-to-head. These trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) catalyze a head-to-head (HH) (1'-1) condensation reaction. This CD includes squalene and phytoene synthases which catalyze the 1'-1 condensation of two 15-carbon (farnesyl) and 20-carbon (geranylgeranyl) isoprenyl diphosphates, respectively. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions (DXXXD) located on opposite walls. These residues mediate binding of prenyl phosphates. A two-step reaction has been proposed for squalene synthase (farnesyl-diphosphate farnesyltransferase) in which, two molecules of FPP react to form a stable cyclopropylcarbinyl diphosphate intermediate, and then the intermediate undergoes heterolysis, isomerization, and reduction with NADPH to form squalene, a precursor of cholestrol. The carotenoid biosynthesis enzyme, phytoene synthase (CrtB), catalyzes
Probab=96.53 E-value=0.46 Score=43.85 Aligned_cols=133 Identities=10% Similarity=0.046 Sum_probs=84.3
Q ss_pred HHHHHhHHHHHhccccccCcccCCCCCHHHHHHHHHcchhhhhhHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHh
Q 019339 153 VEFQTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAGENLDKHVEVKDILVQMGIYFQVQD 232 (342)
Q Consensus 153 ~~~~~~~GQ~~d~~~~~~~~~~~~~~~~~~y~~~~~~KTg~l~~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~D 232 (342)
....++.|...|+.... -.|.+++..-.+.-.|.. ..+.+ .+++.... +....++.++|.|+|+.|
T Consensus 94 ~~~~li~g~~~Dl~~~~-------~~t~~eL~~Y~~~vAg~v-g~l~~---~i~~~~~~---~~~~~~A~~lG~Alqltn 159 (265)
T cd00683 94 PFRDLLAGMAMDLDKRR-------YETLDELDEYCYYVAGVV-GLMLL---RVFGASSD---EAALERARALGLALQLTN 159 (265)
T ss_pred HHHHHHHHHHHhCCCCC-------CCCHHHHHHHHHHhHHHH-HHHHH---HHhCCCCC---hHHHHHHHHHHHHHHHHH
Confidence 34678899999998542 247777777777766664 22322 23332111 345789999999999999
Q ss_pred hhhhhcCCccccCCcccchhhccchHHHHHHHhhccHHHHHHHHHHhCCCChHhHHHHHHHHHHcChHHHHHHHHHHHHH
Q 019339 233 DFLDCFGSPEVIGKVGTDIEDYKCSWLVVKALELCNEEQKKLVHENYGKVDPACVAKVKELYKTLDLEGAFVEYEKESYE 312 (342)
Q Consensus 233 Dlld~~~~~~~~GK~~~Dl~~gk~Tlp~l~al~~~~~~~~~~l~~~~~~~~~~~~~~i~~li~~~g~~~~~~~~~~~~~~ 312 (342)
=+.|+- .|+..|++.+|.=..-+..-. .+.+ +.....+ .++.++ ......++.|..
T Consensus 160 ilRdv~----------eD~~~gR~YlP~d~l~~~gv~--~~~l---~~~~~~~---~~~~~~------~~~~~~A~~~~~ 215 (265)
T cd00683 160 ILRDVG----------EDARRGRIYLPREELARFGVT--LEDL---LAPENSP---AFRALL------RRLIARARAHYR 215 (265)
T ss_pred HHHHHH----------HHHccCCCcCCHHHHHHcCCC--HHHH---cCCCCCH---HHHHHH------HHHHHHHHHHHH
Confidence 999984 577889999997665544311 1122 2222222 223332 223346888999
Q ss_pred HHHHHhhcCCC
Q 019339 313 KLTKSIEAHPT 323 (342)
Q Consensus 313 ~a~~~l~~lp~ 323 (342)
.|...+..+|.
T Consensus 216 ~a~~~~~~lp~ 226 (265)
T cd00683 216 EALAGLAALPR 226 (265)
T ss_pred HHHHhHHhCCH
Confidence 99999999984
No 17
>PLN02632 phytoene synthase
Probab=95.70 E-value=0.35 Score=46.46 Aligned_cols=135 Identities=10% Similarity=0.043 Sum_probs=82.9
Q ss_pred HHHHhHHHHHhccccccCcccCCCCCHHHHHHHHHcchhhhhhHHHHHHHHHHcCCC--HHHHHHHHHHHHHHHHHHHHH
Q 019339 154 EFQTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAGEN--LDKHVEVKDILVQMGIYFQVQ 231 (342)
Q Consensus 154 ~~~~~~GQ~~d~~~~~~~~~~~~~~~~~~y~~~~~~KTg~l~~~~~~~~ga~lag~~--~~~~~~l~~~g~~lG~afQi~ 231 (342)
...++.|...|+.... -.|++++..-.+.--|.+ ..+.+.+ ++..+ +...+.+...+.++|+|+|+.
T Consensus 142 ~~~li~g~~~Dl~~~~-------~~t~~eL~~Ycy~vAgtV-G~l~l~v---lg~~~~~~~~~~~~~~~A~~lG~AlQlt 210 (334)
T PLN02632 142 FRDMIEGMRMDLVKSR-------YENFDELYLYCYYVAGTV-GLMSVPV---MGIAPESKASTESVYNAALALGIANQLT 210 (334)
T ss_pred HHHHHHHHHHHhccCC-------CCCHHHHHHHHHHhhHHH-HHHHHHH---hCCCCccccchHHHHHHHHHHHHHHHHH
Confidence 3677899999987542 237777777666666665 3333333 33222 122345678899999999999
Q ss_pred hhhhhhcCCccccCCcccchhhccchHHHHHHHhhc-cHHHHHHHHHHhCCCChHhHHHHHHHHHHcChHHHHHHHHHHH
Q 019339 232 DDFLDCFGSPEVIGKVGTDIEDYKCSWLVVKALELC-NEEQKKLVHENYGKVDPACVAKVKELYKTLDLEGAFVEYEKES 310 (342)
Q Consensus 232 DDlld~~~~~~~~GK~~~Dl~~gk~Tlp~l~al~~~-~~~~~~~l~~~~~~~~~~~~~~i~~li~~~g~~~~~~~~~~~~ 310 (342)
|=+.|+- .|+..|++.+|.=..-+.. +++ .++.....+. ++.++. .....++.|
T Consensus 211 NILRDv~----------eD~~~GRvYLP~e~L~~~Gv~~e------dl~~~~~~~~---~~~l~~------~~~~~Ar~~ 265 (334)
T PLN02632 211 NILRDVG----------EDARRGRVYLPQDELAQFGLTDE------DIFAGKVTDK---WRAFMK------FQIKRARMY 265 (334)
T ss_pred HHHHHHH----------HHHhCCceeCCHHHHHHcCCCHH------HHhcCCCCHH---HHHHHH------HHHHHHHHH
Confidence 9999983 5888999999965544432 221 1222222222 222211 122357888
Q ss_pred HHHHHHHhhcCCCh
Q 019339 311 YEKLTKSIEAHPTK 324 (342)
Q Consensus 311 ~~~a~~~l~~lp~~ 324 (342)
+++|...+..+|..
T Consensus 266 ~~~a~~~l~~lp~~ 279 (334)
T PLN02632 266 FAEAEEGVSELDPA 279 (334)
T ss_pred HHHHHHhHhhCCHH
Confidence 88888888888853
No 18
>TIGR03465 HpnD squalene synthase HpnD. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. In the organisms Zymomonas mobilis and Bradyrhizobium japonicum these genes have been characterized as squalene synthases (farnesyl-pyrophosphate ligases). Often, these genes appear in tandem with the HpnC gene which appears to have resulted from an ancient gene duplication event. Presumably these proteins form a heteromeric complex, but this has not yet been experimentally demonstrated.
Probab=95.40 E-value=0.53 Score=43.56 Aligned_cols=132 Identities=10% Similarity=0.012 Sum_probs=83.0
Q ss_pred HHHHhHHHHHhccccccCcccCCCCCHHHHHHHHHcchhhhhhHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhh
Q 019339 154 EFQTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAGENLDKHVEVKDILVQMGIYFQVQDD 233 (342)
Q Consensus 154 ~~~~~~GQ~~d~~~~~~~~~~~~~~~~~~y~~~~~~KTg~l~~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD 233 (342)
...++.|+..|+.... -.|.+++..-.+.-.|.+ ..+.+. +++..+ ......+.++|.|+|+.|=
T Consensus 87 ~~~li~g~~~Dl~~~~-------~~t~~dL~~Y~~~vAg~v-g~l~~~---llg~~~----~~~~~~a~~lG~Alqltni 151 (266)
T TIGR03465 87 FLEVIDGMEMDLEQTR-------YPDFAELDLYCDRVAGAV-GRLSAR---IFGATD----ARTLEYAHHLGRALQLTNI 151 (266)
T ss_pred HHHHHHHHHHHcCCCC-------CCCHHHHHHHHHHhHHHH-HHHHHH---HhCCCC----hhHHHHHHHHHHHHHHHHH
Confidence 4678899999987542 247888887777766765 333333 343333 2357889999999999998
Q ss_pred hhhhcCCccccCCcccchhhccchHHHHHHHhhccHHHHHHHHHHhCCCChHhHHHHHHHHHHcChHHHHHHHHHHHHHH
Q 019339 234 FLDCFGSPEVIGKVGTDIEDYKCSWLVVKALELCNEEQKKLVHENYGKVDPACVAKVKELYKTLDLEGAFVEYEKESYEK 313 (342)
Q Consensus 234 lld~~~~~~~~GK~~~Dl~~gk~Tlp~l~al~~~~~~~~~~l~~~~~~~~~~~~~~i~~li~~~g~~~~~~~~~~~~~~~ 313 (342)
+.|+- .|+..|++.+|.=..-+..-. .+. ++.....+. ++.++. .....++.|.++
T Consensus 152 lRdv~----------eD~~~gR~ylP~~~l~~~gv~--~~~---l~~~~~~~~---~~~~~~------~l~~~A~~~l~~ 207 (266)
T TIGR03465 152 LRDVG----------EDARRGRIYLPAEELQRFGVP--AAD---ILEGRYSPA---LAALCR------FQAERARAHYAE 207 (266)
T ss_pred HHHhH----------HHHhCCCeecCHHHHHHcCCC--HHH---hcCCCCCHH---HHHHHH------HHHHHHHHHHHH
Confidence 88883 578889999997555444211 111 222222222 222222 223357778888
Q ss_pred HHHHhhcCCCh
Q 019339 314 LTKSIEAHPTK 324 (342)
Q Consensus 314 a~~~l~~lp~~ 324 (342)
|...+..+|..
T Consensus 208 a~~~~~~~p~~ 218 (266)
T TIGR03465 208 ADALLPACDRR 218 (266)
T ss_pred HHHhhhhCCHh
Confidence 88888888853
No 19
>TIGR03464 HpnC squalene synthase HpnC. This family of genes are members of a superfamily (pfam00494) of phytoene and squalene synthases which catalyze the head-t0-head condensation of polyisoprene pyrophosphates. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. In the organisms Zymomonas mobilis and Bradyrhizobium japonicum these genes have been characterized as squalene synthases (farnesyl-pyrophosphate ligases). Often, these genes appear in tandem with the HpnD gene which appears to have resulted from an ancient gene duplication event. Presumably these proteins form a heteromeric complex, but this has not yet been experimentally demonstrated.
Probab=95.06 E-value=2.8 Score=38.73 Aligned_cols=131 Identities=10% Similarity=-0.036 Sum_probs=80.2
Q ss_pred HHHHhHHHHHhccccccCcccCCCCCHHHHHHHHHcchhhhhhHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhh
Q 019339 154 EFQTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAGENLDKHVEVKDILVQMGIYFQVQDD 233 (342)
Q Consensus 154 ~~~~~~GQ~~d~~~~~~~~~~~~~~~~~~y~~~~~~KTg~l~~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD 233 (342)
...++.|...|+.... -.|.+++..-.+.-.|.+ ..+.+ .+++..+++ ...++.++|.|+|+.|=
T Consensus 88 ~~~li~~~~~Dl~~~~-------~~t~~eL~~Y~~~vAg~v-g~l~~---~i~g~~~~~----~~~~A~~lG~AlQltni 152 (266)
T TIGR03464 88 FLDLLDAFRQDVVVTR-------YATWAELLDYCRYSANPV-GRLVL---DLYGASDPE----NVALSDAICTALQLINF 152 (266)
T ss_pred HHHHHHHHHHhccCCC-------CCCHHHHHHHHHHhHHHH-HHHHH---HHcCCCChh----HHHHHHHHHHHHHHHHH
Confidence 3567789999987542 247777776666666665 33333 233333322 34789999999999998
Q ss_pred hhhhcCCccccCCcccchhhccchHHHHHHHhhc-cHHHHHHHHHHhCCCChHhHHHHHHHHHHcChHHHHHHHHHHHHH
Q 019339 234 FLDCFGSPEVIGKVGTDIEDYKCSWLVVKALELC-NEEQKKLVHENYGKVDPACVAKVKELYKTLDLEGAFVEYEKESYE 312 (342)
Q Consensus 234 lld~~~~~~~~GK~~~Dl~~gk~Tlp~l~al~~~-~~~~~~~l~~~~~~~~~~~~~~i~~li~~~g~~~~~~~~~~~~~~ 312 (342)
+.|+- +|...|++.+|.=..-+.. +++ . ++....... ++.++ ......++.+..
T Consensus 153 LRDl~----------eD~~~gR~YLP~~~l~~~Gv~~e---d---l~~~~~~~~---~~~~~------~~~~~~A~~~~~ 207 (266)
T TIGR03464 153 WQDVG----------VDYRKGRVYLPRDDLARFGVSEE---D---LAAGRATPA---LRELM------AFEVSRTRALLD 207 (266)
T ss_pred HHhhH----------HHHhcCCccCCHHHHHHcCCCHH---H---HhcCCCCHH---HHHHH------HHHHHHHHHHHH
Confidence 88873 5788899999965544432 221 1 222222222 22222 223345788888
Q ss_pred HHHHHhhcCCCh
Q 019339 313 KLTKSIEAHPTK 324 (342)
Q Consensus 313 ~a~~~l~~lp~~ 324 (342)
+|...+..+|..
T Consensus 208 ~a~~~~~~lp~~ 219 (266)
T TIGR03464 208 RGAPLAARVDGR 219 (266)
T ss_pred HHHHhHHhCCHh
Confidence 999999999854
No 20
>PF07307 HEPPP_synt_1: Heptaprenyl diphosphate synthase (HEPPP synthase) subunit 1; InterPro: IPR009920 This family contains subunit 1 of bacterial heptaprenyl diphosphate synthase (HEPPP synthase) (2.5.1.30 from EC) (approximately 230 residues long). The enzyme consists of two subunits, both of which are required for catalysis of heptaprenyl diphosphate synthesis, the precursor for the side chain of the isoprenoid quinone menaquinone-7 (MQ-7) [, ].
Probab=95.02 E-value=0.42 Score=42.75 Aligned_cols=104 Identities=13% Similarity=0.059 Sum_probs=65.7
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCcCcccccccccchhhHhhhHHHHHHHHHHHHHcccCCCchHHHH
Q 019339 67 LTDDEFFLSSALGWCIEWLQAYFLVLDDIMDGSHTRRGQPCWFRVPKVGMIAANDGVLLRNHISRILKNHFRDKPYYVDL 146 (342)
Q Consensus 67 ~~~~~~~~a~~lA~a~EllH~asLihDDI~D~~~~RRg~p~~~~~~g~~~ia~~d~~~l~~~~~~~l~~~~~~~~~~~~~ 146 (342)
++++. +-..+.++-++|+|...||.|-. +..+.+...-.++. .+++||+ ..+..+.++++.. ...+
T Consensus 30 l~~~~---~~~~~~a~~LVq~aLDtHd~V~~-~~~~~~~~~k~RQL---tVLAGDy--~S~~yY~lLA~~~-----~i~l 95 (212)
T PF07307_consen 30 LSEEE---AERYALATMLVQIALDTHDEVDN-AGDESEESSKERQL---TVLAGDY--YSGLYYQLLAESG-----DISL 95 (212)
T ss_pred CCHHH---HHHHHHHHHHHHHHHHhhhhhcc-ccccccHHHHhhhh---hhhhHHH--HHHHHHHHHHhCC-----CHHH
Confidence 45543 33567889999999999999965 22222222211211 2455555 5588899998763 4788
Q ss_pred HHHHHHHHHHHhHHHHHhccccccCcccCCCCCHHHHHHHHH-cchh
Q 019339 147 LDLFNEVEFQTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQ-YKTA 192 (342)
Q Consensus 147 ~~~~~~~~~~~~~GQ~~d~~~~~~~~~~~~~~~~~~y~~~~~-~KTg 192 (342)
++.+++++..+.+....=-... ..+.++|++.+. -+|+
T Consensus 96 i~~ls~aI~eiNE~K~~ly~~~--------~~~~e~~~~~~~~ies~ 134 (212)
T PF07307_consen 96 IRALSEAIKEINELKMSLYQKK--------KETAEEYLESVVTIESA 134 (212)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh--------hCCHHHHHHHHHHHHHH
Confidence 9999999999888886443321 236677665543 3444
No 21
>TIGR01559 squal_synth farnesyl-diphosphate farnesyltransferase. This model describes farnesyl-diphosphate farnesyltransferase, also known as squalene synthase, as found in eukaryotes. This family is related to phytoene synthases. Tentatively identified archaeal homologs (excluded from this model) lack the C-terminal predicted transmembrane region universally conserved among members of this family.
Probab=94.88 E-value=1.2 Score=42.94 Aligned_cols=150 Identities=9% Similarity=0.054 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHHHhHHHHHhccccccCcccCCCCCHHHHHHHHHcchhhhhhHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 019339 145 DLLDLFNEVEFQTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAGENLDKHVEVKDILVQM 224 (342)
Q Consensus 145 ~~~~~~~~~~~~~~~GQ~~d~~~~~~~~~~~~~~~~~~y~~~~~~KTg~l~~~~~~~~ga~lag~~~~~~~~l~~~g~~l 224 (342)
...+.+.+....|..|...|+...... ..|.++|..=..+=-|.. -.+.+.+-+. +|...........++..+
T Consensus 101 ~~~~~I~~~~~~M~~GMa~dl~~~~~~-----~~T~~dL~~YCy~VAG~V-G~mlt~l~~~-~~~~~~~~~~~~~~A~~l 173 (336)
T TIGR01559 101 KYQEVIADITRRMGNGMADFIDKEVTN-----EQTVGDYDKYCHYVAGLV-GIGLSRLFVA-SGFEDPSLGESEALSNSM 173 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcCC-----CCCHHHHHHHHhccccHH-HHHHHHHHhh-cCCCCcchhhhHHHHHHH
Confidence 455666777788999999888754210 136666555444444432 1122222211 222211122346889999
Q ss_pred HHHHHHHhhhhhhcCCccccCCcccchhhccchHHHHHHHhhccHHHHHHHHHHhCCCChHhHHHHHHHHHHcChHHHHH
Q 019339 225 GIYFQVQDDFLDCFGSPEVIGKVGTDIEDYKCSWLVVKALELCNEEQKKLVHENYGKVDPACVAKVKELYKTLDLEGAFV 304 (342)
Q Consensus 225 G~afQi~DDlld~~~~~~~~GK~~~Dl~~gk~Tlp~l~al~~~~~~~~~~l~~~~~~~~~~~~~~i~~li~~~g~~~~~~ 304 (342)
|+|+|+.|=+.|+. +|+.+|++-||-=..-+...+ +..+...... ......+ +...
T Consensus 174 G~aLQlTNIlRDv~----------ED~~~GR~YlP~e~l~~~g~~-----~~dl~~~~~~---~~~~~~l------~~lv 229 (336)
T TIGR01559 174 GLFLQKTNIIRDYL----------EDINEGRMFWPREIWSKYAKK-----LGDFKKPENS---DKALQCL------NELV 229 (336)
T ss_pred HHHHHHHHHHHHHH----------hHHhCCCCCCCHHHHHHcCCC-----HHHhcCcccc---HHHHHHH------HHHH
Confidence 99999999999984 578889999995533333221 1112222111 1222222 2233
Q ss_pred HHHHHHHHHHHHHhhcCCChH
Q 019339 305 EYEKESYEKLTKSIEAHPTKE 325 (342)
Q Consensus 305 ~~~~~~~~~a~~~l~~lp~~~ 325 (342)
..+..|+..|+..+..+++..
T Consensus 230 ~~A~~~~~~al~yl~~l~~~~ 250 (336)
T TIGR01559 230 TNALHHATDCLTYLSRLRDQS 250 (336)
T ss_pred HHHHHHHHHHHHHHHhCCCcc
Confidence 457778888888888886543
No 22
>PF00494 SQS_PSY: Squalene/phytoene synthase; InterPro: IPR002060 Squalene synthase 2.5.1.21 from EC (farnesyl-diphosphate farnesyltransferase) (SQS) and Phytoene synthase 2.5.1.32 from EC (PSY) share a number of functional similarities. These similarities are also reflected at the level of their primary structure [, , ]. In particular three well conserved regions are shared by SQS and PSY; they could be involved in substrate binding and/or the catalytic mechanism. SQS catalyzes the conversion of two molecules of farnesyl diphosphate (FPP) into squalene. It is the first committed step in the cholesterol biosynthetic pathway. The reaction carried out by SQS is catalyzed in two separate steps: the first is a head-to-head condensation of the two molecules of FPP to form presqualene diphosphate; this intermediate is then rearranged in a NADP-dependent reduction, to form squalene: 2 FPP -> presqualene diphosphate + NADP -> squalene SQS is found in eukaryotes. In yeast it is encoded by the ERG9 gene, in mammals by the FDFT1 gene. SQS seems to be membrane-bound. PSY catalyzes the conversion of two molecules of geranylgeranyl diphosphate (GGPP) into phytoene. It is the second step in the biosynthesis of carotenoids from isopentenyl diphosphate. The reaction carried out by PSY is catalyzed in two separate steps: the first is a head-to-head condensation of the two molecules of GGPP to form prephytoene diphosphate; this intermediate is then rearranged to form phytoene. 2 GGPP -> prephytoene diphosphate -> phytoene PSY is found in all organisms that synthesize carotenoids: plants and photosynthetic bacteria as well as some non- photosynthetic bacteria and fungi. In bacteria PSY is encoded by the gene crtB. In plants PSY is localized in the chloroplast.; GO: 0016740 transferase activity, 0009058 biosynthetic process; PDB: 3NRI_A 3NPR_A 2ZCR_A 2ZCP_B 4F6V_A 4EA0_A 3ACW_A 4F6X_A 3VJE_B 3ACX_A ....
Probab=93.95 E-value=2.3 Score=39.06 Aligned_cols=140 Identities=14% Similarity=0.148 Sum_probs=84.7
Q ss_pred HHHHHHhHHHHHhccccccCcccCCCCCHHHHHHHHHcchhhhhhHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Q 019339 152 EVEFQTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAGENLDKHVEVKDILVQMGIYFQVQ 231 (342)
Q Consensus 152 ~~~~~~~~GQ~~d~~~~~~~~~~~~~~~~~~y~~~~~~KTg~l~~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~ 231 (342)
+.+..+..|...|+.... -.|++++..-.+.-+|++ ..+.+. +++..+++ ......+.++|.|+|+.
T Consensus 91 ~~l~~li~~~~~dl~~~~-------~~t~~~L~~Y~~~vag~v-g~l~~~---~~~~~~~~--~~~~~~a~~lG~alql~ 157 (267)
T PF00494_consen 91 EPLLELIDGMEMDLEFTP-------YETFADLERYCYYVAGSV-GLLLLQ---LLGAHDPD--EAARDAARALGRALQLT 157 (267)
T ss_dssp HHHHHHHHHHHHCTT-S---------SSHHHHHHHHHHHTHHH-HHHHHH---HHHSSTSH--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccccCCC-------CCCHHHHHHHHHHHHHHH-HHHHHH---Hhccccch--hhHHHHHHHHHHHHHHH
Confidence 445778899999998643 248899988888888876 433333 23221222 46788999999999999
Q ss_pred hhhhhhcCCccccCCcccc-hhhccchHHHHHHHhhc-cHHHHHHHHHHhCCCChHhHHHHHHHHHHcChHHHHHHHHHH
Q 019339 232 DDFLDCFGSPEVIGKVGTD-IEDYKCSWLVVKALELC-NEEQKKLVHENYGKVDPACVAKVKELYKTLDLEGAFVEYEKE 309 (342)
Q Consensus 232 DDlld~~~~~~~~GK~~~D-l~~gk~Tlp~l~al~~~-~~~~~~~l~~~~~~~~~~~~~~i~~li~~~g~~~~~~~~~~~ 309 (342)
|=+.|+- .| +..|++-+|.=..-+.. +++ .+.+. ....+ .++.++. .....++.
T Consensus 158 nilRd~~----------~D~~~~gR~ylP~d~l~~~gv~~~---dl~~~--~~~~~---~~~~~~~------~~~~~A~~ 213 (267)
T PF00494_consen 158 NILRDIP----------EDALRRGRIYLPLDDLRRFGVTPE---DLLAG--RPRSE---RLRALIR------ELAARARA 213 (267)
T ss_dssp HHHHTHH----------HH-HHTT---S-HHHHHHTTSSHH---HHHHH--G-GGH---HHHHHHH------HHHHHHHH
T ss_pred HHHHHhH----------HHHHhcccccCCchhHHHcCCCHH---HHHhc--ccCCH---HHHHHHH------HHHHHHHH
Confidence 9888883 58 78999999976665542 222 22111 01111 1333333 23446888
Q ss_pred HHHHHHHHhhcCCChHHHH
Q 019339 310 SYEKLTKSIEAHPTKEVQA 328 (342)
Q Consensus 310 ~~~~a~~~l~~lp~~~~~~ 328 (342)
+.++|...+..+|+...+.
T Consensus 214 ~l~~a~~~~~~l~~~~~~~ 232 (267)
T PF00494_consen 214 HLDEARAGLSALPPPRARP 232 (267)
T ss_dssp HHHHHHHGGGGS--TTHHH
T ss_pred HHHHHHHHHHHcCCHhhhH
Confidence 9999999999995444443
No 23
>cd00687 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cyclases, Class 1. This CD includes terpenoid cyclases such as pentalenene synthase and aristolochene synthase which, using an all-trans pathway, catalyze the ionization of farnesyl diphosphate, followed by the formation of a macrocyclic intermediate by bond formation between C1 with either C10 (aristolochene synthase) or C11 (pentalenene synthase), resulting in production of tricyclic hydrocarbon pentalenene or bicyclic hydrocarbon aristolochene. As with other enzymes with the 'terpenoid synthase fold', they have two conserved metal binding motifs, proposed to coordinate Mg2+ ion-bridged binding of the diphosphate moiety of FPP to the enzymes. Metal-triggered substrate ionization initiates catalysis, and the alpha-barrel active site serves as a template to channel and stabilize the conformations of reactive carbocation intermediates through a complex cyclization cascade. These enzymes function in the monomeric form and are found in
Probab=91.29 E-value=13 Score=34.77 Aligned_cols=89 Identities=4% Similarity=0.011 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHHHhHHHHHhccccccCcccCCCCCHHHHHHHHHcchhhhhhHHHHHHHHHHcC--CCHHHHH--HHHH
Q 019339 144 VDLLDLFNEVEFQTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAG--ENLDKHV--EVKD 219 (342)
Q Consensus 144 ~~~~~~~~~~~~~~~~GQ~~d~~~~~~~~~~~~~~~~~~y~~~~~~KTg~l~~~~~~~~ga~lag--~~~~~~~--~l~~ 219 (342)
......+.+.+...+.|+..+..+..++. .+|.++|+++=..-.|.. + .+.++-...| -+++... .+..
T Consensus 128 ~~~~~r~~~~~~~~~~a~~~e~~~~~~~~----~psl~eYl~~R~~~~g~~-~--~~~l~~~~~g~~lp~~~~~~~~~~~ 200 (303)
T cd00687 128 AEWFNRFAHYTEDYFDAYIWEGKNRLNGH----VPDVAEYLEMRRFNIGAD-P--CLGLSEFIGGPEVPAAVRLDPVMRA 200 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCC----CcCHHHHHHHhhhccccc-c--cHHHHHHhcCCCCCHHHHhChHHHH
Confidence 34456666777778888888887766543 479999996655544543 2 2333333333 2444433 3778
Q ss_pred HHHHHHHHHHHHhhhhhhcC
Q 019339 220 ILVQMGIYFQVQDDFLDCFG 239 (342)
Q Consensus 220 ~g~~lG~afQi~DDlld~~~ 239 (342)
+-...+...-+.||+..|..
T Consensus 201 l~~~~~~~~~l~NDl~S~~K 220 (303)
T cd00687 201 LEALASDAIALVNDIYSYEK 220 (303)
T ss_pred HHHHHHHHHHHHHHHHhhHH
Confidence 88889999999999999853
No 24
>COG1562 ERG9 Phytoene/squalene synthetase [Lipid metabolism]
Probab=85.70 E-value=21 Score=33.50 Aligned_cols=135 Identities=10% Similarity=0.061 Sum_probs=78.4
Q ss_pred HHHHHHhHHHHHhccccccCcccCCCCCHHHHHHHHHcchhhhhhHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Q 019339 152 EVEFQTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAGENLDKHVEVKDILVQMGIYFQVQ 231 (342)
Q Consensus 152 ~~~~~~~~GQ~~d~~~~~~~~~~~~~~~~~~y~~~~~~KTg~l~~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~ 231 (342)
+...++..|+..|+..... .+++++..=+.+=-|.. ..-+..+++-.+ ..........+|.|+|+.
T Consensus 103 ~~~~~~~da~~~Dl~~~~y-------~~~~eL~~Yc~~vAg~v----G~l~~~Il~~~~---~~~~~~~a~~lG~A~Qlv 168 (288)
T COG1562 103 EAFPALIDAMRMDLDRTRY-------LDFEELEEYCYGVAGAV----GLLLARILGPDK---DAATRAYARGLGLALQLV 168 (288)
T ss_pred HHHHHHHHHHHHHhhhccc-------cCHHHHHHHHHHhHHHH----HHHHHHHhCccc---chhhHHHHHHHHHHHHHH
Confidence 4456788999999987643 24555554444433332 334444554322 233455555599999999
Q ss_pred hhhhhhcCCccccCCcccchhhccchHHHHHHHhhccHHHHHHHHHHhCCCChHhHHHHHHHHHHcChHHHHHHHHHHHH
Q 019339 232 DDFLDCFGSPEVIGKVGTDIEDYKCSWLVVKALELCNEEQKKLVHENYGKVDPACVAKVKELYKTLDLEGAFVEYEKESY 311 (342)
Q Consensus 232 DDlld~~~~~~~~GK~~~Dl~~gk~Tlp~l~al~~~~~~~~~~l~~~~~~~~~~~~~~i~~li~~~g~~~~~~~~~~~~~ 311 (342)
|=+.|+ +.|..+|+.-+|.=...+..-+ .+.+ +.....+ .++++++ +.-..++.+.
T Consensus 169 NilRdv----------~eD~~~GrvylP~e~l~~~g~~--~~d~---~~~~~~~---~~~~~~~------~~~~~ar~~~ 224 (288)
T COG1562 169 NILRDV----------GEDRRRGRVYLPAEELARFGVS--EADL---LAGRVDD---AFRELMR------FEADRARDHL 224 (288)
T ss_pred HHHHHh----------HHHHhCCcccCCHHHHHHhCCC--HHHH---Hcccchh---HHHHHHH------HHHHHHHHHH
Confidence 988887 4688899998885444433221 1111 1111111 2333332 2334677788
Q ss_pred HHHHHHhhcCCCh
Q 019339 312 EKLTKSIEAHPTK 324 (342)
Q Consensus 312 ~~a~~~l~~lp~~ 324 (342)
..|...+..+|..
T Consensus 225 ~~a~~~~~~lp~~ 237 (288)
T COG1562 225 AEARRGLPALPGR 237 (288)
T ss_pred HHHHHhhhhCCcc
Confidence 8888888888754
No 25
>PF06783 UPF0239: Uncharacterised protein family (UPF0239); InterPro: IPR009621 This is a group of transmembrane proteins of unknown function.; GO: 0016021 integral to membrane
Probab=69.58 E-value=6.2 Score=29.83 Aligned_cols=29 Identities=10% Similarity=-0.062 Sum_probs=23.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q 019339 210 NLDKHVEVKDILVQMGIYFQVQDDFLDCF 238 (342)
Q Consensus 210 ~~~~~~~l~~~g~~lG~afQi~DDlld~~ 238 (342)
.++..+.+-+||..+|-.||++==+--++
T Consensus 14 Eet~~e~llRYGLf~GAIFQliCilAiI~ 42 (85)
T PF06783_consen 14 EETFFENLLRYGLFVGAIFQLICILAIIL 42 (85)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHheee
Confidence 45678899999999999999985544444
No 26
>cd00868 Terpene_cyclase_C1 Terpene cyclases, Class 1. Terpene cyclases, Class 1 (C1) of the class 1 family of isoprenoid biosynthesis enzymes, which share the 'isoprenoid synthase fold' and convert linear, all-trans, isoprenoids, geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate into numerous cyclic forms of monoterpenes, diterpenes, and sesquiterpenes. Also included in this CD are the cis-trans terpene cyclases such as trichodiene synthase. The class I terpene cyclization reactions proceed via electrophilic alkylations in which a new carbon-carbon single bond is generated through interaction between a highly reactive electron-deficient allylic carbocation and an electron-rich carbon-carbon double bond. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl phosphates via bridging Mg2+ ions, inducing proposed conformational ch
Probab=53.78 E-value=1.7e+02 Score=26.46 Aligned_cols=106 Identities=10% Similarity=-0.057 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHHhHHHHHhccccccCcccCCCCCHHHHHHHHHcchhhhhhHHHHHHHHHHcC--CCH---HHHHHHHH
Q 019339 145 DLLDLFNEVEFQTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAG--ENL---DKHVEVKD 219 (342)
Q Consensus 145 ~~~~~~~~~~~~~~~GQ~~d~~~~~~~~~~~~~~~~~~y~~~~~~KTg~l~~~~~~~~ga~lag--~~~---~~~~~l~~ 219 (342)
.....+.+.....+.|...+..+...+. .++.++|+.+-..=.|.. + .+.+.....| -++ .....+..
T Consensus 122 ~~~~r~~~~~~~~~~~~~~e~~~~~~~~----~p~~~eYl~~R~~~~g~~-~--~~~l~~~~~g~~l~~~~~~~~~~~~~ 194 (284)
T cd00868 122 ESLPYLKEAWKDLLRAYLVEAKWANEGY----VPSFEEYLENRRVSIGYP-P--LLALSFLGMGDILPEEAFEWLPSYPK 194 (284)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHCCC----CCCHHHHHHhceehhhHH-H--HHHHHHHHcCCCCCHHHHHHhhhhHH
Confidence 4555666677778888888888765443 579999997766655543 2 2222222222 243 33466788
Q ss_pred HHHHHHHHHHHHhhhhhhcCCccccCCcccchhhcc-chHHHHHHHhhc
Q 019339 220 ILVQMGIYFQVQDDFLDCFGSPEVIGKVGTDIEDYK-CSWLVVKALELC 267 (342)
Q Consensus 220 ~g~~lG~afQi~DDlld~~~~~~~~GK~~~Dl~~gk-~Tlp~l~al~~~ 267 (342)
+....+..--+.||+..|..+. ..|. .++..++.-+..
T Consensus 195 l~~~~~~~~~l~NDl~S~~kE~----------~~g~~~N~v~vl~~~~~ 233 (284)
T cd00868 195 LVRASSTIGRLLNDIASYEKEI----------ARGEVANSVECYMKEYG 233 (284)
T ss_pred HHHHHHHHHHHhccchHHHHHH----------ccCCcccHHHHHHhccC
Confidence 8888888888999998885332 1222 366666666653
No 27
>PRK12884 ubiA prenyltransferase; Reviewed
Probab=49.94 E-value=2.1e+02 Score=26.30 Aligned_cols=61 Identities=10% Similarity=0.026 Sum_probs=37.9
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCccccCCcccchhhccchHHHHHHHhhc
Q 019339 197 YLPVACALLMAGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVGTDIEDYKCSWLVVKALELC 267 (342)
Q Consensus 197 ~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DDlld~~~~~~~~GK~~~Dl~~gk~Tlp~l~al~~~ 267 (342)
.++...|....+......-.+.-+.--+.+.+++..|+.|.. +|.+.|+.|+|+.+.-+++
T Consensus 140 ~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~D~e----------~D~~~G~~Tl~v~~G~~~~ 200 (279)
T PRK12884 140 GMTFIFGGIAVGELNEAVILLAAMAFLMTLGREIMKDIEDVE----------GDRLRGARTLAILYGEKIA 200 (279)
T ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHhhhhh----------hHHHcCCeeechHhcHHHH
Confidence 344444544333322222233344455566778888888875 4678899999999987753
No 28
>PF00348 polyprenyl_synt: Polyprenyl synthetase; InterPro: IPR000092 A variety of isoprenoid compounds are synthesized by various organisms. For example in eukaryotes the isoprenoid biosynthetic pathway is responsible for the synthesis of a variety of end products including cholesterol, dolichol, ubiquinone or coenzyme Q. In bacteria this pathway leads to the synthesis of isopentenyl tRNA, isoprenoid quinones, and sugar carrier lipids. Among the enzymes that participate in that pathway, are a number of polyprenyl synthetase enzymes which catalyze a 1'4-condensation between 5 carbon isoprene units. It has been shown [, , , , ] that all the above enzymes share some regions of sequence similarity. Two of these regions are rich in aspartic-acid residues and could be involved in the catalytic mechanism and/or the binding of the substrates.; GO: 0008299 isoprenoid biosynthetic process; PDB: 3AQC_B 3AQB_D 3Q1O_C 3LLW_B 3EFQ_A 3EGT_A 3DYG_A 2P1C_A 2OGD_A 2EWG_B ....
Probab=45.40 E-value=1.1e+02 Score=27.98 Aligned_cols=56 Identities=16% Similarity=0.116 Sum_probs=39.4
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCccccCCcccchhhccchHHHHHHHhh
Q 019339 200 VACALLMAGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVGTDIEDYKCSWLVVKALEL 266 (342)
Q Consensus 200 ~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DDlld~~~~~~~~GK~~~Dl~~gk~Tlp~l~al~~ 266 (342)
+.+.+.+.|.+++....+...-+.+=.++=|.||+.|= +++|+|++|.-..+.-..
T Consensus 21 ~~~~~~~~~~~~~~~~~~a~avEliH~asLIhDDI~D~-----------s~~RRG~pt~~~~~G~~~ 76 (260)
T PF00348_consen 21 VLLAAEALGGDPEKAIPLAAAVELIHAASLIHDDIIDN-----------SDLRRGKPTVHKKFGNAI 76 (260)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTT-----------CSEETTEECHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhhcc-----------cccCCCCccccccccccc
Confidence 44444555666666778888888899999999999772 456777776666554443
No 29
>PRK13591 ubiA prenyltransferase; Provisional
Probab=43.48 E-value=3e+02 Score=26.20 Aligned_cols=32 Identities=19% Similarity=-0.014 Sum_probs=26.0
Q ss_pred HHHHHHhhhhhhcCCccccCCcccchhhccchHHHHHHHhhc
Q 019339 226 IYFQVQDDFLDCFGSPEVIGKVGTDIEDYKCSWLVVKALELC 267 (342)
Q Consensus 226 ~afQi~DDlld~~~~~~~~GK~~~Dl~~gk~Tlp~l~al~~~ 267 (342)
.+..+.+|+.|+.+ |.++|+.|+|+.++.+++
T Consensus 193 ~~~~iindirDiEG----------Dr~~G~kTLPV~lG~~~A 224 (307)
T PRK13591 193 FINSCVYDFKDVKG----------DTLAGIKTLPVSLGEQKT 224 (307)
T ss_pred HHHHHHHHhhhhHh----------HHHcCCeeEEEEECHHHH
Confidence 34457899999964 678899999999998874
No 30
>PRK13105 ubiA prenyltransferase; Reviewed
Probab=39.22 E-value=61 Score=30.36 Aligned_cols=35 Identities=17% Similarity=0.009 Sum_probs=29.5
Q ss_pred HHHHHHHHhhhhhhcCCccccCCcccchhhccchHHHHHHHhhcc
Q 019339 224 MGIYFQVQDDFLDCFGSPEVIGKVGTDIEDYKCSWLVVKALELCN 268 (342)
Q Consensus 224 lG~afQi~DDlld~~~~~~~~GK~~~Dl~~gk~Tlp~l~al~~~~ 268 (342)
+..++.+.+|+.|+.+ |-+.|+.|+|+.++.+++-
T Consensus 172 ~~~a~~ii~~irDie~----------Dr~~G~~Tlpv~lG~~~a~ 206 (282)
T PRK13105 172 WGMASHAFGAVQDVVA----------DREAGIASIATVLGARRTV 206 (282)
T ss_pred HHHHHHHHHhCcchHh----------HHHcCCccchHHhcHHHHH
Confidence 3679999999999865 5678999999999998753
No 31
>cd00685 Trans_IPPS_HT Trans-Isoprenyl Diphosphate Synthases, head-to-tail. These trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) catalyze head-to-tail (HT) (1'-4) condensation reactions. This CD includes all-trans (E)-isoprenyl diphosphate synthases which synthesize various chain length (C10, C15, C20, C25, C30, C35, C40, C45, and C50) linear isoprenyl diphosphates from precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). They catalyze the successive 1'-4 condensation of the 5-carbon IPP to allylic substrates geranyl-, farnesyl-, or geranylgeranyl-diphosphate. Isoprenoid chain elongation reactions proceed via electrophilic alkylations in which a new carbon-carbon single bond is generated through interaction between a highly reactive electron-deficient allylic carbocation and an electron-rich carbon-carbon double bond. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions (DDXX(XX
Probab=37.29 E-value=81 Score=28.77 Aligned_cols=29 Identities=17% Similarity=0.245 Sum_probs=21.9
Q ss_pred CCCH-HHHHHHHHHHHHHHHHHHHHhhhhh
Q 019339 208 GENL-DKHVEVKDILVQMGIYFQVQDDFLD 236 (342)
Q Consensus 208 g~~~-~~~~~l~~~g~~lG~afQi~DDlld 236 (342)
|.++ +....+...-+-+=.++-|.||+.|
T Consensus 34 g~~~~~~~~~la~aiEllh~asLIhDDI~D 63 (259)
T cd00685 34 GGPELEAALRLAAAIELLHTASLVHDDVMD 63 (259)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 4444 5556677777888889999999977
No 32
>KOG1345 consensus Serine/threonine kinase [Signal transduction mechanisms]
Probab=36.82 E-value=20 Score=33.62 Aligned_cols=19 Identities=32% Similarity=0.359 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHhhhh
Q 019339 77 ALGWCIEWLQAYFLVLDDI 95 (342)
Q Consensus 77 ~lA~a~EllH~asLihDDI 95 (342)
.++.|+|++|.--|||.||
T Consensus 129 ql~SAi~fMHsknlVHRdl 147 (378)
T KOG1345|consen 129 QLLSAIEFMHSKNLVHRDL 147 (378)
T ss_pred HHHHHHHHhhccchhhccc
Confidence 5789999999999999998
No 33
>PRK10888 octaprenyl diphosphate synthase; Provisional
Probab=36.64 E-value=71 Score=30.46 Aligned_cols=49 Identities=18% Similarity=0.180 Sum_probs=32.5
Q ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCccccCCcccchhhccchHHHHH
Q 019339 203 ALLMAGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVGTDIEDYKCSWLVVK 262 (342)
Q Consensus 203 ga~lag~~~~~~~~l~~~g~~lG~afQi~DDlld~~~~~~~~GK~~~Dl~~gk~Tlp~l~ 262 (342)
++.+.|.+.+....+...-+-+=.+..|-||+.| .+++|+|++|+...+
T Consensus 55 ~~~~~g~~~~~~~~~A~avEllH~asLiHDDI~D-----------~s~~RRG~pt~~~~~ 103 (323)
T PRK10888 55 AARAVGYQGNAHVTIAALIEFIHTATLLHDDVVD-----------ESDMRRGKATANAAF 103 (323)
T ss_pred HHHHcCCChHHHHHHHHHHHHHHHHHHHHccccc-----------CCcccCCCCCHHHHh
Confidence 3344455545455666666778888999999977 246677777765544
No 34
>PRK12872 ubiA prenyltransferase; Reviewed
Probab=34.99 E-value=70 Score=29.56 Aligned_cols=35 Identities=17% Similarity=0.007 Sum_probs=28.5
Q ss_pred HHHHHHHHHhhhhhhcCCccccCCcccchhhccchHHHHHHHhhc
Q 019339 223 QMGIYFQVQDDFLDCFGSPEVIGKVGTDIEDYKCSWLVVKALELC 267 (342)
Q Consensus 223 ~lG~afQi~DDlld~~~~~~~~GK~~~Dl~~gk~Tlp~l~al~~~ 267 (342)
-+-.+.++..|+.|+.+ |-+.|+.|+|+.++.+++
T Consensus 172 l~~~~~~~~~d~~D~e~----------D~~~G~~Tlpv~lG~~~t 206 (285)
T PRK12872 172 LKSFIREIVFDIKDIEG----------DRKSGLKTLPIVLGKERT 206 (285)
T ss_pred HHHHHHHHHHhcccchh----------HHHcCCcccchhcchHHH
Confidence 34567889999999865 567899999999998864
No 35
>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]. These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane
Probab=34.35 E-value=94 Score=27.76 Aligned_cols=42 Identities=12% Similarity=0.011 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhcCCccccCCcccchhhccchHHHHHHHhh
Q 019339 215 VEVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVGTDIEDYKCSWLVVKALEL 266 (342)
Q Consensus 215 ~~l~~~g~~lG~afQi~DDlld~~~~~~~~GK~~~Dl~~gk~Tlp~l~al~~ 266 (342)
-.+.-+.--++......+|+.|+.+ |.+.|+.|+|+.+..++
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~D~~~----------D~~~g~~Tl~v~~G~~~ 190 (257)
T PF01040_consen 149 FLLAIFFFLLIFAIMFFNDIRDIEG----------DRKAGRRTLPVLLGEKK 190 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHH----------HHHcCCcchHHHHHHHH
Confidence 3344444677788888889999864 66889999999996665
No 36
>PF06603 UpxZ: UpxZ family of transcription anti-terminator antagonists; InterPro: IPR010570 This family consists of several hypothetical proteins of unknown function and seems to be specific to Bacteroides species.
Probab=31.21 E-value=2.7e+02 Score=22.04 Aligned_cols=67 Identities=15% Similarity=0.204 Sum_probs=43.5
Q ss_pred cHHHHHHHHHHhCCC--ChH-hHHHHHHHHHHcChH----HHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHH
Q 019339 268 NEEQKKLVHENYGKV--DPA-CVAKVKELYKTLDLE----GAFVEYEKESYEKLTKSIEAHPTKEVQAVLKSFL 334 (342)
Q Consensus 268 ~~~~~~~l~~~~~~~--~~~-~~~~i~~li~~~g~~----~~~~~~~~~~~~~a~~~l~~lp~~~~~~~L~~l~ 334 (342)
+.+-......++.+. +++ +-.....++..+++. ..-++..+.-.+++++.|+.+|++-.|-.|...+
T Consensus 31 N~ev~~~~~~Ly~~~G~t~EeeA~lCLaLLmGYnat~yd~geke~~~Q~vL~Rs~~vL~~Lp~SlLK~~Llt~C 104 (106)
T PF06603_consen 31 NKEVYEQSNDLYSQHGSTPEEEANLCLALLMGYNATIYDNGEKEEKKQEVLDRSWEVLDKLPASLLKVQLLTYC 104 (106)
T ss_pred hHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhccchhhhCccHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 445555566666553 343 344566666655542 2224467778889999999999999887776543
No 37
>PRK12882 ubiA prenyltransferase; Reviewed
Probab=30.96 E-value=4.2e+02 Score=24.29 Aligned_cols=35 Identities=9% Similarity=-0.009 Sum_probs=27.0
Q ss_pred HHHHHHHHHhhhhhhcCCccccCCcccchhhccchHHHHHHHhhc
Q 019339 223 QMGIYFQVQDDFLDCFGSPEVIGKVGTDIEDYKCSWLVVKALELC 267 (342)
Q Consensus 223 ~lG~afQi~DDlld~~~~~~~~GK~~~Dl~~gk~Tlp~l~al~~~ 267 (342)
..-+++-+.+|+.|+. +|.+.|.+|+|+.+..+++
T Consensus 168 l~~~~~~~~~~~~D~e----------~D~~~G~~tlpv~~G~~~t 202 (276)
T PRK12882 168 LATLAREIIKDVEDIE----------GDRAEGARTLPILIGVRKA 202 (276)
T ss_pred HHHHHHHHHhhhhhhh----------hHHHcCCccccHHhhHHHH
Confidence 3455677778888875 4678899999999988763
No 38
>PLN00012 chlorophyll synthetase; Provisional
Probab=28.48 E-value=75 Score=31.08 Aligned_cols=34 Identities=24% Similarity=0.129 Sum_probs=29.0
Q ss_pred HHHHHHHHHhhhhhhcCCccccCCcccchhhccchHHHHHHHhh
Q 019339 223 QMGIYFQVQDDFLDCFGSPEVIGKVGTDIEDYKCSWLVVKALEL 266 (342)
Q Consensus 223 ~lG~afQi~DDlld~~~~~~~~GK~~~Dl~~gk~Tlp~l~al~~ 266 (342)
-+++++-+.+|+.|+.+ |.+.|+.|+|+.+..++
T Consensus 263 l~~lai~ivnd~~Die~----------Dr~aG~~TLpV~~G~~~ 296 (375)
T PLN00012 263 IAGLGIAIVNDFKSIEG----------DRALGLQSLPVAFGVET 296 (375)
T ss_pred HHHHHHHHHhhhcchhh----------HHHcCCcccceeechHH
Confidence 47888999999999864 67889999999998775
No 39
>KOG3330 consensus Transport protein particle (TRAPP) complex subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.57 E-value=1.2e+02 Score=25.83 Aligned_cols=57 Identities=16% Similarity=0.279 Sum_probs=36.3
Q ss_pred HHcchhhhhhHHHHHHHHHHcC------CCHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCccccCCcccchhh
Q 019339 187 VQYKTAYYSFYLPVACALLMAG------ENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVGTDIED 253 (342)
Q Consensus 187 ~~~KTg~l~~~~~~~~ga~lag------~~~~~~~~l~~~g~~lG~afQi~DDlld~~~~~~~~GK~~~Dl~~ 253 (342)
+.+=.+.| | .+..|++++. ..++....|.+.|+++|+ .++||++.-.+- ++ +.|+++
T Consensus 13 ~~k~naEL-F--tLTYGaiV~ql~kDyed~e~Vn~qLdkMGyNiG~--RLiedFLAks~v----pR-C~dfre 75 (183)
T KOG3330|consen 13 SKKMNAEL-F--TLTYGAIVTQLCKDYEDPEDVNKQLDKMGYNIGI--RLIEDFLAKSNV----PR-CVDFRE 75 (183)
T ss_pred HHhhhhhh-h--hhhHHHHHHHHHHhhcCHHHHHHHHHhccchhhH--HHHHHHHhhcCC----ch-hhhHHH
Confidence 33334555 4 4566776552 244556789999999997 688998875322 22 666655
No 40
>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed
Probab=26.56 E-value=5.1e+02 Score=23.81 Aligned_cols=35 Identities=17% Similarity=-0.009 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCCCCC---cCccccccc
Q 019339 77 ALGWCIEWLQAYFLVLDDIMDGSHTR---RGQPCWFRV 111 (342)
Q Consensus 77 ~lA~a~EllH~asLihDDI~D~~~~R---Rg~p~~~~~ 111 (342)
-...++=++|.+.-+..|+.|-+.=| +++|...-+
T Consensus 41 l~~l~~~l~~~~~~~iNd~~D~~iD~~~~~~Rpl~sG~ 78 (279)
T PRK09573 41 LAALVVFLVCAGGNVINDIYDIEIDKINKPERPIPSGR 78 (279)
T ss_pred HHHHHHHHHHHHHHHHHhhcccccccccCCCCCcCCCc
Confidence 34456669999999999998865433 455554333
No 41
>TIGR02748 GerC3_HepT heptaprenyl diphosphate synthase component II. Members of this family are component II of the heterodimeric heptaprenyl diphosphate synthase. The trusted cutoff was set such that all members identified are encoded near to a recognizable gene for component I (in Pfam family pfam07307). This enzyme acts in menaquinone-7 isoprenoid side chain biosynthesis.
Probab=26.54 E-value=1.2e+02 Score=28.70 Aligned_cols=49 Identities=20% Similarity=0.089 Sum_probs=30.8
Q ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCccccCCcccchhhccchHHHHH
Q 019339 203 ALLMAGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVGTDIEDYKCSWLVVK 262 (342)
Q Consensus 203 ga~lag~~~~~~~~l~~~g~~lG~afQi~DDlld~~~~~~~~GK~~~Dl~~gk~Tlp~l~ 262 (342)
++.+.|.+.+....+...-+-+=.|.=|-||+.|= +++|.|++|....+
T Consensus 54 ~~~~~~~~~~~~~~~A~aiEliH~asLiHDDI~D~-----------s~~RRg~pt~~~~~ 102 (319)
T TIGR02748 54 AGKFGDYDLDAIKHVAVALELIHMASLVHDDVIDD-----------ADLRRGRPTIKSKW 102 (319)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHhccccCC-----------CCCCCCCcCHHHHh
Confidence 33445555555555666667777888999999772 34555666554433
No 42
>PRK13595 ubiA prenyltransferase; Provisional
Probab=26.15 E-value=1.2e+02 Score=28.59 Aligned_cols=59 Identities=15% Similarity=-0.019 Sum_probs=41.3
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCccccCCcccchhhccchHHHHHHHhhc
Q 019339 197 YLPVACALLMAGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVGTDIEDYKCSWLVVKALELC 267 (342)
Q Consensus 197 ~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DDlld~~~~~~~~GK~~~Dl~~gk~Tlp~l~al~~~ 267 (342)
.++...|+...|...... +--...-++++|++.-|+.|..+ |.+.|..|+|+.++.+++
T Consensus 156 g~p~~~~~~~~g~~~~~~--~l~a~~~w~~g~dii~ai~Dieg----------Dr~~Gi~Slpv~lG~r~a 214 (292)
T PRK13595 156 ALPLALPALALGAPVPWP--PLLALMAWSVGKHAFDAAQDIPA----------DRAAGTRTVATTLGVRGT 214 (292)
T ss_pred HHHHHHHHHHcCCcchHH--HHHHHHHHHHHHHHHHhccChHh----------HHHcCCeechHHhCcHhH
Confidence 456666766666543221 12334456699999999999754 667899999999998864
No 43
>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed
Probab=25.28 E-value=5.8e+02 Score=24.04 Aligned_cols=31 Identities=19% Similarity=-0.107 Sum_probs=25.1
Q ss_pred HHHHHHhhhhhhcCCccccCCcccchhhccchHHHHHHHhh
Q 019339 226 IYFQVQDDFLDCFGSPEVIGKVGTDIEDYKCSWLVVKALEL 266 (342)
Q Consensus 226 ~afQi~DDlld~~~~~~~~GK~~~Dl~~gk~Tlp~l~al~~ 266 (342)
.++.+.+|+.|.. +|.+.|++|+|+.+.-+.
T Consensus 203 ~~~~~~~d~~D~e----------~D~~aG~~Tlpv~~G~~~ 233 (314)
T PRK07566 203 HGIMTLNDFKSVE----------GDRQLGLRSLPVVFGEKN 233 (314)
T ss_pred HHHHHHHHHHHhH----------hHHHcCCcccceeEcHHH
Confidence 4457899999985 477889999999998765
No 44
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=23.67 E-value=83 Score=34.73 Aligned_cols=54 Identities=17% Similarity=0.286 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHhC-C-C--------CCCCCcchHHHHHHHhhcccCCCccchHHHHHHHHHHhhCC
Q 019339 5 KSRFIEVYGVLKQELLN-D-P--------AFEFDHDSRQWVDRMLDYNVPGGKLNRGLSVVDSYRLLKEG 64 (342)
Q Consensus 5 ~~~f~~~~~~l~~~l~~-~-~--------~~~~~~~~~~~l~~~~~~~~~~GK~~Rp~l~~~~~~~~~~g 64 (342)
.+.|+.-|..+.++|+. . . .+.+-...-|.+..+-.+.++||||+||+ +-++||
T Consensus 992 ~~~F~~~F~~va~~Id~IYK~Ltnt~g~AyL~~en~~EPyl~GIky~~~pP~KRFr~m------~~LSGG 1055 (1141)
T KOG0018|consen 992 YERFMACFEHVADNIDRIYKELTNTEGQAYLGLENPEEPYLDGIKYHCMPPGKRFRPM------DNLSGG 1055 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccceeecCCCCCcchhcCccccccCCccccCch------hhcCcc
Confidence 46788889888888876 1 1 01111223355665555556999999998 555555
No 45
>PRK10581 geranyltranstransferase; Provisional
Probab=23.51 E-value=1.7e+02 Score=27.54 Aligned_cols=50 Identities=16% Similarity=0.083 Sum_probs=32.8
Q ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHHhhh--hhhcCCccccCCcccchhhccchHHHHHHH
Q 019339 204 LLMAGENLDKHVEVKDILVQMGIYFQVQDDF--LDCFGSPEVIGKVGTDIEDYKCSWLVVKAL 264 (342)
Q Consensus 204 a~lag~~~~~~~~l~~~g~~lG~afQi~DDl--ld~~~~~~~~GK~~~Dl~~gk~Tlp~l~al 264 (342)
+.+.|.+++....+...-+-+=.+.-|-||+ .| + +|+|+|++|+...+.-
T Consensus 56 ~~~~g~~~~~~~~~A~avEliH~aSLiHDDip~~D--~---------s~~RRG~pt~h~~~G~ 107 (299)
T PRK10581 56 GQMFGVSTNTLDAPAAAVECIHAYSLIHDDLPAMD--D---------DDLRRGLPTCHVKFGE 107 (299)
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHHHHHcCccccc--C---------CCccCCCcChHHHhCc
Confidence 3344555555556666667777888999999 66 2 4667777776665543
No 46
>PF15080 DUF4547: Domain of unknown function (DUF4547)
Probab=20.95 E-value=5.4e+02 Score=22.10 Aligned_cols=74 Identities=9% Similarity=-0.032 Sum_probs=44.5
Q ss_pred ccchhhccchHHHHHHHhhccHHHHHHHHHHhCCC--ChHhHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHhhcC
Q 019339 248 GTDIEDYKCSWLVVKALELCNEEQKKLVHENYGKV--DPACVAKVKELYKTLD--LEGAFVEYEKESYEKLTKSIEAH 321 (342)
Q Consensus 248 ~~Dl~~gk~Tlp~l~al~~~~~~~~~~l~~~~~~~--~~~~~~~i~~li~~~g--~~~~~~~~~~~~~~~a~~~l~~l 321 (342)
.-|+..|.+|+.-++-...-++.-|..-+..+..- ...++..+...+-.+| +..++...-+.|.....-.|..+
T Consensus 77 LPdL~r~LPTlASvLrrKvkN~~Ir~vwesvLee~GLqE~dv~aLCtFfiahgnkaehy~a~~R~~yi~dv~~mItnm 154 (196)
T PF15080_consen 77 LPDLVRGLPTLASVLRRKVKNKRIRVVWESVLEECGLQEGDVTALCTFFIAHGNKAEHYAAKVRQMYIRDVTFMITNM 154 (196)
T ss_pred hhHHHhCcchHHHHHHHHhhchHHHHHHHHHHHHcCCCcccHHHHHHHHHHhcchHhHhHHHHHHHHHhhHHHHHHHH
Confidence 35899999999999888776665554444444321 3445666666666665 44455544455555555555544
No 47
>KOG0192 consensus Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs [Signal transduction mechanisms]
Probab=20.68 E-value=36 Score=33.10 Aligned_cols=24 Identities=13% Similarity=0.277 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHH-HHhhhh
Q 019339 72 FFLSSALGWCIEWLQAYF-LVLDDI 95 (342)
Q Consensus 72 ~~~a~~lA~a~EllH~as-LihDDI 95 (342)
+.-|+.+|.+++++|.-. +||.|+
T Consensus 145 l~~aldiArGm~YLH~~~~iIHrDL 169 (362)
T KOG0192|consen 145 LRIALDIARGMEYLHSEGPIIHRDL 169 (362)
T ss_pred HHHHHHHHHHHHHHhcCCCeeeccc
Confidence 556788999999999999 999999
No 48
>KOG0194 consensus Protein tyrosine kinase [Signal transduction mechanisms]
Probab=20.67 E-value=62 Score=32.70 Aligned_cols=26 Identities=15% Similarity=0.233 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh
Q 019339 70 DEFFLSSALGWCIEWLQAYFLVLDDI 95 (342)
Q Consensus 70 ~~~~~a~~lA~a~EllH~asLihDDI 95 (342)
+...-++.+|+++++||.=.+||.||
T Consensus 263 ek~~~~~~AA~Gl~YLh~k~~IHRDI 288 (474)
T KOG0194|consen 263 EKLRFCYDAARGLEYLHSKNCIHRDI 288 (474)
T ss_pred HHHHHHHHHHhHHHHHHHCCCcchhH
Confidence 35556778899999999999999999
No 49
>TIGR02056 ChlG chlorophyll synthase, ChlG. This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).
Probab=20.39 E-value=1.7e+02 Score=27.61 Aligned_cols=34 Identities=21% Similarity=0.097 Sum_probs=27.3
Q ss_pred HHHHHHHHhhhhhhcCCccccCCcccchhhccchHHHHHHHhhc
Q 019339 224 MGIYFQVQDDFLDCFGSPEVIGKVGTDIEDYKCSWLVVKALELC 267 (342)
Q Consensus 224 lG~afQi~DDlld~~~~~~~~GK~~~Dl~~gk~Tlp~l~al~~~ 267 (342)
+..++-+.+|+.|+. +|.+.|+.|+|+.+.-+++
T Consensus 195 ~~~~i~~~n~~~D~e----------~D~~~G~~Tlpv~lG~~~a 228 (306)
T TIGR02056 195 AGLGIAIVNDFKSVE----------GDRALGLQSLPVAFGIETA 228 (306)
T ss_pred HHHHHHHHHHccChH----------HHHHcCCcCcchhcChHHH
Confidence 555666899999985 4778899999999987753
Done!