Query 019339
Match_columns 342
No_of_seqs 125 out of 1510
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 14:34:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019339.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019339hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1uby_A FPS, farnesyl diphospha 100.0 1.1E-69 3.9E-74 521.4 35.6 338 4-342 27-367 (367)
2 2ihi_A Pyrophosphate synthase; 100.0 2.4E-70 8.3E-75 529.2 30.1 337 4-341 32-395 (395)
3 2qis_A Farnesyl pyrophosphate 100.0 7.4E-69 2.5E-73 517.0 35.7 339 3-342 33-374 (374)
4 3dyh_A Farnesyl pyrophosphate 100.0 8.3E-70 2.8E-74 525.5 29.2 341 1-342 22-390 (390)
5 1yhl_A Farnesyl pyrophosphate 100.0 2.2E-68 7.6E-73 512.9 33.4 337 5-342 4-362 (362)
6 3mav_A Farnesyl pyrophosphate 100.0 3.5E-68 1.2E-72 516.6 33.8 333 7-340 35-394 (395)
7 3mzv_A Decaprenyl diphosphate 100.0 2.4E-67 8.2E-72 500.4 27.8 317 7-342 10-333 (341)
8 3rmg_A Octaprenyl-diphosphate 100.0 1.7E-67 5.9E-72 500.4 26.5 316 7-342 5-326 (334)
9 3oyr_A Trans-isoprenyl diphosp 100.0 9.8E-68 3.3E-72 503.1 24.5 316 7-341 23-344 (345)
10 1wy0_A Geranylgeranyl pyrophos 100.0 3.2E-67 1.1E-71 501.3 26.2 297 32-342 31-342 (342)
11 2her_A Fragment, farnesyl pyro 100.0 1.1E-67 3.7E-72 505.1 19.7 321 3-340 23-354 (368)
12 3lk5_A Geranylgeranyl pyrophos 100.0 2.4E-65 8.1E-70 492.5 26.8 301 34-341 50-372 (380)
13 4dhd_A Polyprenyl synthetase; 100.0 3.3E-65 1.1E-69 488.6 26.9 294 33-342 31-336 (358)
14 3lmd_A Geranylgeranyl pyrophos 100.0 2.5E-65 8.4E-70 488.3 25.5 290 32-342 59-352 (360)
15 3pko_A Geranylgeranyl pyrophos 100.0 1.1E-65 3.7E-70 488.0 22.6 318 7-342 13-334 (334)
16 1wmw_A Geranylgeranyl diphosph 100.0 2.5E-64 8.6E-69 478.9 31.6 295 33-342 25-330 (330)
17 3nf2_A Putative polyprenyl syn 100.0 4E-65 1.4E-69 486.7 24.7 293 33-342 29-344 (352)
18 3aqb_B Component B of hexapren 100.0 3.1E-65 1.1E-69 484.2 21.1 290 33-342 30-325 (325)
19 3tc1_A Octaprenyl pyrophosphat 100.0 7.9E-63 2.7E-67 464.2 28.2 278 40-338 28-307 (315)
20 3apz_A Geranyl diphosphate syn 100.0 1.9E-63 6.5E-68 476.3 23.6 294 33-342 34-348 (348)
21 2e8v_A Geranylgeranyl pyrophos 100.0 9.2E-63 3.1E-67 469.5 24.2 304 24-339 17-339 (340)
22 2q58_A Fragment, farnesyl pyro 100.0 3E-62 1E-66 470.3 22.7 318 4-338 24-352 (368)
23 2q80_A Geranylgeranyl pyrophos 100.0 3.2E-61 1.1E-65 451.5 22.0 287 29-342 7-297 (301)
24 1v4e_A Octoprenyl-diphosphate 100.0 1.4E-59 4.7E-64 439.8 24.1 257 37-324 30-288 (299)
25 3ts7_A Geranyltranstransferase 100.0 8.7E-60 3E-64 443.8 22.8 258 32-342 35-302 (324)
26 4f62_A Geranyltranstransferase 100.0 2E-59 6.9E-64 440.1 23.8 277 10-342 11-295 (317)
27 1rtr_A Geranyltranstransferase 100.0 3.5E-59 1.2E-63 437.4 21.7 280 8-342 6-293 (301)
28 3lsn_A Geranyltranstransferase 100.0 5.7E-59 2E-63 435.6 22.8 279 9-342 8-296 (304)
29 3pde_A Farnesyl-diphosphate sy 100.0 1E-59 3.5E-64 440.6 17.4 289 1-342 1-300 (309)
30 2h8o_A Geranyltranstransferase 100.0 1.5E-58 5E-63 438.0 22.7 258 32-342 70-335 (335)
31 3lom_A Geranyltranstransferase 100.0 1.2E-58 4.2E-63 434.7 21.9 282 8-342 9-303 (313)
32 3uca_A Geranyltranstransferase 100.0 2.5E-58 8.6E-63 433.8 22.7 258 32-342 59-324 (324)
33 3p8r_A Geranyltranstransferase 100.0 2E-58 6.9E-63 431.9 21.3 280 7-342 12-302 (302)
34 3p8l_A Geranyltranstransferase 100.0 1.5E-58 5E-63 432.2 20.3 259 32-340 35-302 (302)
35 3ipi_A Geranyltranstransferase 100.0 3.8E-58 1.3E-62 428.4 21.8 271 12-341 11-283 (295)
36 1rqj_A Geranyltranstransferase 100.0 1.3E-58 4.3E-63 433.7 17.8 258 33-342 30-299 (299)
37 3m0g_A Farnesyl diphosphate sy 100.0 1.5E-58 5.1E-63 431.5 18.0 256 33-342 28-289 (297)
38 3llw_A Geranyltranstransferase 100.0 1.2E-57 4.1E-62 427.7 22.6 293 1-341 1-304 (311)
39 2ftz_A Geranyltranstransferase 100.0 5.3E-56 1.8E-60 411.9 21.8 264 12-340 15-284 (284)
40 3npk_A Geranyltranstransferase 100.0 1.4E-55 4.8E-60 410.0 20.9 240 13-271 7-253 (291)
41 2azj_A Geranylgeranyl pyrophos 100.0 1.1E-53 3.8E-58 397.5 19.3 242 34-341 37-280 (289)
42 2j1p_A Geranylgeranyl pyrophos 100.0 5.3E-53 1.8E-57 394.3 19.5 247 33-342 38-293 (293)
43 4fp4_A Polyprenyl synthetase; 100.0 1E-47 3.5E-52 354.7 14.4 222 1-254 3-226 (285)
44 3kra_B Geranyl diphosphate syn 100.0 4.1E-46 1.4E-50 344.3 18.1 187 33-234 26-221 (274)
45 3qkc_B Geranyl diphosphate syn 100.0 5.9E-45 2E-49 336.5 16.2 215 1-236 1-224 (273)
46 3vj8_A Squalene synthase; farn 94.3 0.75 2.6E-05 43.0 13.6 144 147-324 113-256 (343)
47 4hd1_A Squalene synthase HPNC; 94.1 0.95 3.3E-05 41.2 13.8 131 154-324 106-237 (294)
48 3acx_A Dehydrosqualene synthas 94.0 1.4 4.8E-05 40.0 14.6 133 154-324 110-242 (293)
49 3kb9_A EPI-isozizaene synthase 85.7 21 0.00073 33.3 15.0 105 145-266 177-286 (382)
50 3v1v_A 2-MIB synthase, 2-methy 80.1 43 0.0015 32.0 14.9 105 146-266 256-364 (433)
51 1ps1_A Pentalenene synthase; a 74.2 50 0.0017 29.8 15.0 105 145-266 134-244 (337)
52 3g4d_A (+)-delta-cadinene synt 58.9 1.4E+02 0.0049 29.4 14.1 104 145-266 366-476 (554)
53 3n0f_A Isoprene synthase; terp 56.1 1.6E+02 0.0054 29.0 13.3 104 147-266 366-474 (555)
54 3m00_A Aristolochene synthase; 47.4 1.6E+02 0.0053 29.1 11.5 103 146-266 363-471 (550)
55 3bny_A Aristolochene synthase; 45.3 1.6E+02 0.0056 26.0 14.4 60 177-239 165-226 (320)
56 3rmg_A Octaprenyl-diphosphate 43.8 34 0.0012 31.4 5.8 52 203-265 58-109 (334)
57 4fp4_A Polyprenyl synthetase; 34.8 52 0.0018 29.6 5.3 42 210-262 66-107 (285)
58 2ong_A 4S-limonene synthase; m 34.1 2.6E+02 0.0089 27.3 10.8 105 147-267 357-466 (543)
59 2azj_A Geranylgeranyl pyrophos 34.0 72 0.0025 28.6 6.2 53 202-265 59-111 (289)
60 3mzv_A Decaprenyl diphosphate 33.6 42 0.0014 30.9 4.7 52 200-262 61-112 (341)
61 3nf2_A Putative polyprenyl syn 33.2 56 0.0019 30.2 5.5 52 200-262 62-113 (352)
62 2q80_A Geranylgeranyl pyrophos 32.4 79 0.0027 28.4 6.3 49 206-265 39-87 (301)
63 3sdr_A Alpha-bisabolene syntha 31.7 3.6E+02 0.012 27.8 11.7 103 147-266 627-738 (817)
64 1di1_A Aristolochene synthase; 30.7 2.7E+02 0.0091 24.2 18.2 71 163-240 141-213 (300)
65 1n1b_A (+)-bornyl diphosphate 30.5 3.9E+02 0.013 26.1 13.3 102 148-267 364-473 (549)
66 4dhd_A Polyprenyl synthetase; 29.5 48 0.0016 30.7 4.3 45 208-263 61-105 (358)
67 1wmw_A Geranylgeranyl diphosph 29.2 79 0.0027 28.8 5.8 51 200-261 47-97 (330)
68 3p5p_A Taxadiene synthase; cla 27.6 2.6E+02 0.0089 28.7 9.8 104 147-266 568-676 (764)
69 1v4e_A Octoprenyl-diphosphate 27.6 89 0.0031 28.1 5.7 45 210-265 59-103 (299)
70 3pko_A Geranylgeranyl pyrophos 27.4 87 0.003 28.6 5.7 50 203-263 66-116 (334)
71 1wy0_A Geranylgeranyl pyrophos 26.5 63 0.0022 29.6 4.6 50 203-263 57-106 (342)
72 3lmd_A Geranylgeranyl pyrophos 25.9 64 0.0022 30.0 4.5 51 202-263 84-135 (360)
73 2e8v_A Geranylgeranyl pyrophos 25.5 1E+02 0.0035 28.2 5.8 48 205-263 53-100 (340)
74 3lom_A Geranyltranstransferase 25.2 1E+02 0.0035 27.9 5.7 50 201-261 59-110 (313)
75 2ftz_A Geranyltranstransferase 24.6 1.3E+02 0.0044 26.8 6.1 50 203-263 57-108 (284)
76 3aqb_B Component B of hexapren 24.4 76 0.0026 28.8 4.7 52 201-263 53-104 (325)
77 3p8l_A Geranyltranstransferase 24.4 97 0.0033 27.9 5.3 48 206-264 65-114 (302)
78 3uca_A Geranyltranstransferase 24.2 95 0.0033 28.3 5.3 52 200-262 82-135 (324)
79 3pde_A Farnesyl-diphosphate sy 23.8 1E+02 0.0034 28.0 5.3 52 203-265 59-114 (309)
80 3p8r_A Geranyltranstransferase 23.3 83 0.0028 28.3 4.6 53 200-263 58-112 (302)
81 3lsn_A Geranyltranstransferase 22.3 95 0.0033 28.0 4.8 51 202-263 54-106 (304)
82 1rqj_A Geranyltranstransferase 22.2 1.6E+02 0.0054 26.3 6.3 52 201-263 53-106 (299)
83 3m0g_A Farnesyl diphosphate sy 22.0 1.3E+02 0.0045 26.9 5.7 53 200-263 49-103 (297)
84 3ipi_A Geranyltranstransferase 21.9 45 0.0015 30.0 2.5 46 208-255 58-103 (295)
85 2j1p_A Geranylgeranyl pyrophos 21.3 1.7E+02 0.0058 26.1 6.3 50 203-263 63-114 (293)
86 1rtr_A Geranyltranstransferase 21.3 1.3E+02 0.0045 27.0 5.5 50 203-263 53-104 (301)
87 1xkp_A Putative membrane-bound 20.2 1.5E+02 0.0052 25.9 5.5 89 250-339 142-233 (246)
No 1
>1uby_A FPS, farnesyl diphosphate synthase; transferase, isoprene biosynthesis, cholesterol biosynthesis; HET: DMA; 2.40A {Gallus gallus} SCOP: a.128.1.1 PDB: 1ubw_A* 1ubv_A* 1ubx_A* 1fps_A
Probab=100.00 E-value=1.1e-69 Score=521.44 Aligned_cols=338 Identities=47% Similarity=0.818 Sum_probs=303.2
Q ss_pred hHHHHHHHHHHHHHHHhCCC-CCCCCcchHHHHHHHhhcccCCCccchHHHHHHHHHHhhCCC-CCChHHHHHHHHHHHH
Q 019339 4 LKSRFIEVYGVLKQELLNDP-AFEFDHDSRQWVDRMLDYNVPGGKLNRGLSVVDSYRLLKEGK-ELTDDEFFLSSALGWC 81 (342)
Q Consensus 4 ~~~~f~~~~~~l~~~l~~~~-~~~~~~~~~~~l~~~~~~~~~~GK~~Rp~l~~~~~~~~~~g~-~~~~~~~~~a~~lA~a 81 (342)
++.+|+.+|+.+.+++.... ....++..++++.++++|...||||+||++|+++++++ ||. +.+++....+..+|++
T Consensus 27 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~y~~~gGKrlRp~l~l~~~~~~-~~~~~~~~~~~~~~~~~A~a 105 (367)
T 1uby_A 27 EREEFVGFFPQIVRDLTEDGIGHPEVGDAVARLKEVLQYNAPGGKCNRGLTVVAAYREL-SGPGQKDAESLRCALAVGWC 105 (367)
T ss_dssp HHHHHHHTHHHHHHHHHTTTSSCTTTHHHHHHHHHHHHHHSSSSCCHHHHHHHHHHHHH-CCGGGCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccCchhhHHHHHHHHhhhcCCCcchhHHHHHHHHHHh-CCCccCChhhHHHHHHHHHH
Confidence 46789999999999998743 33345566789999999999999999999999999999 441 1234434467889999
Q ss_pred HHHHHHHHHHhhhhcCCCCCCcCcccccccccchhhHhhhHHHHHHHHHHHHHcccCCCchHHHHHHHHHHHHHHHhHHH
Q 019339 82 IEWLQAYFLVLDDIMDGSHTRRGQPCWFRVPKVGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQ 161 (342)
Q Consensus 82 ~EllH~asLihDDI~D~~~~RRg~p~~~~~~g~~~ia~~d~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ 161 (342)
+|+||+||||||||||+|++|||+||||++||++.+++||++++.+.++.++++...+.+...++++.+++++..++.||
T Consensus 106 iEliH~asLiHDDImD~s~~RRG~pt~h~~~g~~~~ai~dg~~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ 185 (367)
T 1uby_A 106 IELFQAASLVADDIMDQSLTRRGQLCWYKKEGVGLDAINDSFLLESSVYRVLKKYCRQRPYYVHLLELFLQTAYQTELGQ 185 (367)
T ss_dssp HHHHHHHHHHHHHHHHTCCEETTEECGGGSTTTTTHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcccCCCCCCCCCCChhhccCcHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999875799999999988999998865444456889999999999999999
Q ss_pred HHhccccccCcccCCCCCHHHHHHHHHcchhhhhhHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHHHHHhhhhhhcCC
Q 019339 162 MIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAG-ENLDKHVEVKDILVQMGIYFQVQDDFLDCFGS 240 (342)
Q Consensus 162 ~~d~~~~~~~~~~~~~~~~~~y~~~~~~KTg~l~~~~~~~~ga~lag-~~~~~~~~l~~~g~~lG~afQi~DDlld~~~~ 240 (342)
.+|+.+...+..++..+++++|++|+.+|||+|||++||++|++++| ++++..+.+++||.++|+||||+||++|++++
T Consensus 186 ~lDl~~~~~~~~d~~~~t~~~y~~ii~~KTa~Lsf~~~~~~ga~lag~~~~~~~~~l~~~g~~lG~aFQI~DD~LD~~gd 265 (367)
T 1uby_A 186 MLDLITAPVSKVDLSHFSEERYKAIVKYKTAFYSFYLPVAAAMYMVGIDSKEEHENAKAILLEMGEYFQIQDDYLDCFGD 265 (367)
T ss_dssp HHHHHHSCTTSCCCTTCCHHHHHHHHHHHTHHHHTHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHhcccccccccccCCHHHHHHHHHhCchHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999875443444467999999999999999999999999999999 89999999999999999999999999999999
Q ss_pred ccccCCcccchhhccchHHHHHHHhhccHHHHHHHHHHhCCCChHhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHhhc
Q 019339 241 PEVIGKVGTDIEDYKCSWLVVKALELCNEEQKKLVHENYGKVDPACVAKVKELYKTLDLEGAFVEYEKESYEKLTKSIEA 320 (342)
Q Consensus 241 ~~~~GK~~~Dl~~gk~Tlp~l~al~~~~~~~~~~l~~~~~~~~~~~~~~i~~li~~~g~~~~~~~~~~~~~~~a~~~l~~ 320 (342)
++.+||.|+|+++||+|||++++++.+++++++.|.+++++.++++++.++++++++|+.++++.+++.+.++|++.|+.
T Consensus 266 ~~~~GK~g~Dl~egK~T~p~l~al~~~~~~~~~~l~~~~~~~~~~~~~~v~~li~~~g~~~~~~~~~~~~~~~A~~~L~~ 345 (367)
T 1uby_A 266 PALTGAVGTDIQDNKCSWLVVQCLQRVTPEQRQLLEDNYGRKEPEKVAKVKELYEAVGMRAAFQQYEESSYRRLQELIEK 345 (367)
T ss_dssp TTCSSCCCCCSSSCCCCHHHHHHHHHCCHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcCCchhhHHcCCchHHHHHHHHhCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999988778889999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHhhccC
Q 019339 321 HPTKEVQAVLKSFLAKIYKRQK 342 (342)
Q Consensus 321 lp~~~~~~~L~~l~~~~~~R~~ 342 (342)
+|+++.++.|..+++++++|+|
T Consensus 346 lp~~~~k~~L~~l~~~i~~R~~ 367 (367)
T 1uby_A 346 HSNRLPKEIFLGLAQKIYKRQK 367 (367)
T ss_dssp HCSSSCTHHHHHHHHHHCCCCC
T ss_pred CCCcHHHHHHHHHHHHHHhCcC
Confidence 9998899999999999999986
No 2
>2ihi_A Pyrophosphate synthase; PV092040, structural genomics, structural genomics consortium, SGC, transferase; 2.00A {Plasmodium vivax sai-1} PDB: 3mav_A 3cc9_A* 3ez3_A* 3ldw_A* 3mys_A* 3ph7_A* 3rbm_A* 3ryw_A*
Probab=100.00 E-value=2.4e-70 Score=529.24 Aligned_cols=337 Identities=34% Similarity=0.646 Sum_probs=281.6
Q ss_pred hHHHHHHHHHHHHHHHhCC-CCCCCCcchH----HHHHHHhhcccCCCccchHHHHHHHHHHhhCCCCCChHHHHHHHHH
Q 019339 4 LKSRFIEVYGVLKQELLND-PAFEFDHDSR----QWVDRMLDYNVPGGKLNRGLSVVDSYRLLKEGKELTDDEFFLSSAL 78 (342)
Q Consensus 4 ~~~~f~~~~~~l~~~l~~~-~~~~~~~~~~----~~l~~~~~~~~~~GK~~Rp~l~~~~~~~~~~g~~~~~~~~~~a~~l 78 (342)
++.+|.++|+.++++|.+. .....++... +++.++++|...||||+||++|+++++++ ||...+++....+.++
T Consensus 32 ~~~~f~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~Y~~~GGKrlRp~Lvl~~~~~~-g~~~~~~~~~~~a~~l 110 (395)
T 2ihi_A 32 GLAFFRNMYDKYRDAFLSHLNEYSLEEEIKEHISKYYKLLFDYNCLGGKNNRGILVILIYEYV-KNRDINSSEWEKAACL 110 (395)
T ss_dssp ---CTTTTHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH-C---CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCChhhhhhHHHHHHHHHHhhccCcccHHHHHHHHHHHHh-CCCCCChhHHHHHHHH
Confidence 5678999999999999983 3455555555 89999999999999999999999999999 4533455556678899
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCCCcCcccccccccch-hhHhhhHHHHHHHHHHHHHcccCCCchHHHHHHHHHHHHHHH
Q 019339 79 GWCIEWLQAYFLVLDDIMDGSHTRRGQPCWFRVPKVG-MIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQT 157 (342)
Q Consensus 79 A~a~EllH~asLihDDI~D~~~~RRg~p~~~~~~g~~-~ia~~d~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 157 (342)
|+++|+||+||||||||||+|++|||+||||+.||.+ .+|+|+|+++.+.++.++++...+.+...++++.+++++..+
T Consensus 111 A~aiEliH~asLIHDDImD~s~~RRG~pt~h~~~g~~~~~AI~~gd~L~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~ 190 (395)
T 2ihi_A 111 AWCIEILQAAFLVADDIMDKGEMRRNKYCWYLLKDVETKNAVNDVLLLYNSIYKLIEIYLRNESCYVDVIATFRDATLKT 190 (395)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSEETTEECGGGSTTTHHHHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccCCCCCCCCCCccccCCccHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998 449999999999999999876444455689999999999999
Q ss_pred hHHHHHhc-cc-----------------cc-cCcccCCCCCHHHHHHHHHcchhhhhhHHHHHHHHHHcCCCHHH--HHH
Q 019339 158 ASGQMIDL-IT-----------------TI-EGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAGENLDK--HVE 216 (342)
Q Consensus 158 ~~GQ~~d~-~~-----------------~~-~~~~~~~~~~~~~y~~~~~~KTg~l~~~~~~~~ga~lag~~~~~--~~~ 216 (342)
+.||.+|+ .| .. .+..+++.+++++|++|+.+|||+|||++||++|++++|++++. .+.
T Consensus 191 ~~GQ~lDl~~~~~~~~~~~~~~~~~~~~~~~e~~~dl~~~t~~~y~~i~~~KTa~Ls~~~~~~~ga~lag~~~~~~~~~~ 270 (395)
T 2ihi_A 191 IIGQHLDTNIFSDKYSDAHREIDVNNINVPEQPVIDINMINFGVYKNIVIHKTAYYSFFLPIVCGMLLAGIAVDNLIYKK 270 (395)
T ss_dssp HHHHHHHHHTTSHHHHCSSSCCCTTCCCCC-CCCCCGGGCSHHHHHHHHHHHHHHHHTHHHHHHHHHHTTCCTTCTHHHH
T ss_pred HHhHHHHHHhhhhcccccccccccccccccccccccccCCCHHHHHHHHHccchHHHHHHHHHHHHHHcCCChhhHHHHH
Confidence 99999999 33 11 22222336799999999999999998999999999999998887 899
Q ss_pred HHHHHHHHHHHHHHHhhhhhhcCCccccCCcccchhhccchHHHHHHHhhccHHHHHHHHHHhCCCChHhHHHHHHHHHH
Q 019339 217 VKDILVQMGIYFQVQDDFLDCFGSPEVIGKVGTDIEDYKCSWLVVKALELCNEEQKKLVHENYGKVDPACVAKVKELYKT 296 (342)
Q Consensus 217 l~~~g~~lG~afQi~DDlld~~~~~~~~GK~~~Dl~~gk~Tlp~l~al~~~~~~~~~~l~~~~~~~~~~~~~~i~~li~~ 296 (342)
+++||.++|+||||+||++|++++++.+||.|+|+++||+|||++++++.+++++++.|.+++++.++++++++++++++
T Consensus 271 l~~~g~~lG~aFQI~DD~LD~~gd~~~~GK~g~Dl~egK~T~p~l~al~~~~~~~~~~L~~~~~~~~~~~~~~v~~l~~~ 350 (395)
T 2ihi_A 271 IEDISMLMGEYFQIHDDYLDIFGDSTKTGKVGSDIQNNKLTWPLIKTFELCSEPDKIKIVKNYGKNNLACVKVIDSLYEQ 350 (395)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCC---------CTTTTTCCCHHHHHHHHHCCHHHHHHHHHHCC-CCHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCHHHhCCCcchhhcCCchHHHHHHHHhCCHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999988888889999999999
Q ss_pred cChHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcc
Q 019339 297 LDLEGAFVEYEKESYEKLTKSIEAHPTKEVQAVLKSFLAKIYKRQ 341 (342)
Q Consensus 297 ~g~~~~~~~~~~~~~~~a~~~l~~lp~~~~~~~L~~l~~~~~~R~ 341 (342)
+|++++++++++.+.++|++.|+.+|+++.++.|..+++++++|.
T Consensus 351 ~g~~~~~~~~~~~~~~~A~~~L~~lp~~~~r~~L~~l~~~i~~R~ 395 (395)
T 2ihi_A 351 YKIRKHYESYEKAQKAKILSAINELHHEGIEYVLKYLLEILFTGV 395 (395)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHC-----
T ss_pred CChHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhccC
Confidence 999999999999999999999999999999999999999999983
No 3
>2qis_A Farnesyl pyrophosphate synthetase; trans-prenyltransferase, structural genomics, structural GEN consortium, SGC, transferase; HET: RIS; 1.80A {Homo sapiens} PDB: 4dem_F* 1yv5_A* 1yq7_A* 2opm_A* 2opn_A* 3cp6_A* 2rah_A* 2vf6_A* 1zw5_A* 3b7l_A* 3s4j_A* 3rye_A* 3n45_F* 2f89_F* 2f7m_F* 2f8z_F* 2f8c_F* 2f92_F* 2f9k_F* 3n1v_F* ...
Probab=100.00 E-value=7.4e-69 Score=516.97 Aligned_cols=339 Identities=44% Similarity=0.776 Sum_probs=296.1
Q ss_pred hhHHHHHHHHHHHHHHHhCCC-CCCCCcchHHHHHHHhhcccCCCccchHHHHHHHHHHhhCCC-CCChHHHHHHHHHHH
Q 019339 3 DLKSRFIEVYGVLKQELLNDP-AFEFDHDSRQWVDRMLDYNVPGGKLNRGLSVVDSYRLLKEGK-ELTDDEFFLSSALGW 80 (342)
Q Consensus 3 ~~~~~f~~~~~~l~~~l~~~~-~~~~~~~~~~~l~~~~~~~~~~GK~~Rp~l~~~~~~~~~~g~-~~~~~~~~~a~~lA~ 80 (342)
.++.+|+..|+.+-+++.... ....++..++++.++++|...||||+||++|+++++++ ||. ..+++.+..+.++|+
T Consensus 33 ~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~l~~~~~y~~~gGKrlRp~l~l~~~~~~-~~~~~~~~~~~~~a~~~A~ 111 (374)
T 2qis_A 33 QEKQDFVQHFSQIVRVLTEDEMGHPEIGDAIARLKEVLEYNAIGGKYNRGLTVVVAFREL-VEPRKQDADSLQRAWTVGW 111 (374)
T ss_dssp HHHHHHHHHHHHHHHHHHTTC--CGGGHHHHHHHHHHHHHHSSSSCCHHHHHHHHHHHHH-SCGGGCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhhcCCCcchHHHHHHHHHHHh-CCCCccchHHHHHHHHHHH
Confidence 356788888888888877633 22234556788999999988999999999999999999 441 122344456788999
Q ss_pred HHHHHHHHHHHhhhhcCCCCCCcCcccccccccchhhHhhhHHHHHHHHHHHHHcccCCCchHHHHHHHHHHHHHHHhHH
Q 019339 81 CIEWLQAYFLVLDDIMDGSHTRRGQPCWFRVPKVGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASG 160 (342)
Q Consensus 81 a~EllH~asLihDDI~D~~~~RRg~p~~~~~~g~~~ia~~d~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~G 160 (342)
++|+||+||||||||||+|++|||+||+|++||++.+++++|+++.+.++.++++...+.+...++++.+++++..++.|
T Consensus 112 avEliH~asLIHDDImD~s~~RRG~pt~h~~~G~~~~Ai~~g~~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~G 191 (374)
T 2qis_A 112 CVELLQAFFLVADDIMDSSLTRRGQICWYQKPGVGLDAINDANLLEACIYRLLKLYCREQPYYLNLIELFLQSSYQTEIG 191 (374)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEETTEECGGGSTTTGGGHHHHHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccccCCCCCCCCCccHHHhcCchHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999986479999999999999999876444345678999999999999999
Q ss_pred HHHhccccccCcccCCCCCHHHHHHHHHcchhhhhhHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHHHHHhhhhhhcC
Q 019339 161 QMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAG-ENLDKHVEVKDILVQMGIYFQVQDDFLDCFG 239 (342)
Q Consensus 161 Q~~d~~~~~~~~~~~~~~~~~~y~~~~~~KTg~l~~~~~~~~ga~lag-~~~~~~~~l~~~g~~lG~afQi~DDlld~~~ 239 (342)
|.+|+.+...+..+++.+++++|++|+.+|||+|||++||++|++++| ++++..+.+++||.++|+||||+||++|+++
T Consensus 192 Q~lDl~~~~~~~~d~~~~t~~~y~~i~~~KTa~Lsf~~~~~~ga~lag~a~~~~~~~l~~~g~~lG~aFQI~DDiLD~~g 271 (374)
T 2qis_A 192 QTLDLLTAPQGNVDLVRFTEKRYKSIVKYKSAFYSFYLPIAAAMYMAGIDGEKEHANAKKILLEMGEFFQIQDDYLDLFG 271 (374)
T ss_dssp HHHHHHHSCTTCCCGGGCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHcccccccccccCCHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 999999865433333347999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred CccccCCcccchhhccchHHHHHHHhhccHHHHHHHHHHhCCCChHhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHhh
Q 019339 240 SPEVIGKVGTDIEDYKCSWLVVKALELCNEEQKKLVHENYGKVDPACVAKVKELYKTLDLEGAFVEYEKESYEKLTKSIE 319 (342)
Q Consensus 240 ~~~~~GK~~~Dl~~gk~Tlp~l~al~~~~~~~~~~l~~~~~~~~~~~~~~i~~li~~~g~~~~~~~~~~~~~~~a~~~l~ 319 (342)
+++.+||.|+|+++||+|||++++++.+++++++.|.+++++.+++++++++++++++|+.++++.+++.+.++|++.|+
T Consensus 272 d~~~~GK~g~Dl~~gK~T~p~l~al~~a~~~~~~~l~~~~~~~~~~~~~~v~~li~~~g~~~~~~~~~~~~~~~a~~~L~ 351 (374)
T 2qis_A 272 DPSVTGKIGTDIQDNKCSWLVVQCLQRATPEQYQILKENYGQKEAEKVARVKALYEELDLPAVFLQYEEDSYSHIMALIE 351 (374)
T ss_dssp CHHHHCSCCCTTTTTCCCHHHHHHHHHCCHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhcCCchhHHHcCCccHHHHHHHHhCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998877888999999999999999999999999999999999
Q ss_pred cCCChHHHHHHHHHHHHHhhccC
Q 019339 320 AHPTKEVQAVLKSFLAKIYKRQK 342 (342)
Q Consensus 320 ~lp~~~~~~~L~~l~~~~~~R~~ 342 (342)
.+|+++.++.|..+++++++|+|
T Consensus 352 ~lp~~~~k~~L~~l~~~i~~R~k 374 (374)
T 2qis_A 352 QYAAPLPPAVFLGLARKIYKRRK 374 (374)
T ss_dssp HHCTTSCHHHHHHHHHHHC----
T ss_pred hCCCchHHHHHHHHHHHHHcCcC
Confidence 99998899999999999999986
No 4
>3dyh_A Farnesyl pyrophosphate synthase; protein-bisphosphonate complex, isoprene biosynthesis, transferase; HET: 721; 1.94A {Trypanosoma brucei} PDB: 2ewg_A* 2i19_A* 2p1c_A* 3dyf_A* 3dyg_A* 2ogd_A* 3efq_A* 3egt_A*
Probab=100.00 E-value=8.3e-70 Score=525.50 Aligned_cols=341 Identities=39% Similarity=0.635 Sum_probs=295.7
Q ss_pred CchhHHHHHHHHHHHHHHHhCC--CCCCCCcchHHHHHHHhhcccCCCccchHHHHHHHHHHhhCCCC--C-----ChHH
Q 019339 1 MSDLKSRFIEVYGVLKQELLND--PAFEFDHDSRQWVDRMLDYNVPGGKLNRGLSVVDSYRLLKEGKE--L-----TDDE 71 (342)
Q Consensus 1 ~~~~~~~f~~~~~~l~~~l~~~--~~~~~~~~~~~~l~~~~~~~~~~GK~~Rp~l~~~~~~~~~~g~~--~-----~~~~ 71 (342)
|++.++.|+++|+.+.++|.+. ...++++....++.++++|.+.||||+||++|+++++++ +|.. . +...
T Consensus 22 ~~~~~~~f~~~~~~v~~~l~~~l~~~~~~~~~~~~~l~~~m~Y~~~GGKr~Rp~l~l~~~~~l-~~~~~~~~~~~~~~~~ 100 (390)
T 3dyh_A 22 ASMPMQMFMQVYDEIQMFLLEELELKFDMDPNRVRYLRKMMDTTCLGGKYNRGLTVIDVAESL-LSLSPNNNGEEDDGAR 100 (390)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHT-SCC---------CCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHhhcCCccchhHHHHHHHHHHh-CCccccccccccccCC
Confidence 3566889999999999999982 234555667789999999999999999999999999998 3310 0 0001
Q ss_pred HHHHHHHHH----HHHHHHHHHHHhhhhcCCCCCCcCcccccccccch-hhHhhhHHHHHHHHHHHHHcccCCCchHHHH
Q 019339 72 FFLSSALGW----CIEWLQAYFLVLDDIMDGSHTRRGQPCWFRVPKVG-MIAANDGVLLRNHISRILKNHFRDKPYYVDL 146 (342)
Q Consensus 72 ~~~a~~lA~----a~EllH~asLihDDI~D~~~~RRg~p~~~~~~g~~-~ia~~d~~~l~~~~~~~l~~~~~~~~~~~~~ 146 (342)
...++++|+ ++|+||+||||||||||+|++|||+||||+.||++ ++++||++++.+.++.++.+...+.+...++
T Consensus 101 ~~~~~~~A~~~g~avEliH~asLIHDDImD~s~~RRG~Pt~h~~~G~~~ail~gD~ll~~a~a~~ll~~~~~~~~~~~~~ 180 (390)
T 3dyh_A 101 RKRVLHDACVCGWMIEFLQAHYLVEDDIMDNSVTRRGKPCWYRHPDVTVQCAINDGLLLKSWTHMMAMHFFADRPFLQDL 180 (390)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEETTEECGGGSTTCCHHHHHHHHHHHHHHHHHHHHHHSTTCTTHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHcCCcCCCCCcCCCccccccCChHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHH
Confidence 122344444 89999999999999999999999999999999998 8999999998888888888754444445789
Q ss_pred HHHHHHHHHHHhHHHHHhccccc-----------cCcccCCCCCHHHHHHHHHcchhhhhhHHHHHHHHHHcCCCHHH-H
Q 019339 147 LDLFNEVEFQTASGQMIDLITTI-----------EGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAGENLDK-H 214 (342)
Q Consensus 147 ~~~~~~~~~~~~~GQ~~d~~~~~-----------~~~~~~~~~~~~~y~~~~~~KTg~l~~~~~~~~ga~lag~~~~~-~ 214 (342)
++.+++++..++.||.+|+.+.. .+..++..+++++|++|+.+|||+|+|++||++|++++|++++. .
T Consensus 181 ~~~~~~~~~~~~~GQ~lDl~~~~e~~~~d~~~~~~~~~~~~~~t~~~y~~i~~~KTa~L~~~~~~~~ga~laga~~~~~~ 260 (390)
T 3dyh_A 181 LCRFNRVDYTTAVGQLYDVTSMFDSNKLDPDVSQPTTTDFAEFTLSNYKRIVKYKTAYYTYLLPLVMGLIVSEALPTVDM 260 (390)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTSCGGGCCTTSCCCCCSSCTTCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCGGGSCH
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccccccccccccccccccCCCCHHHHHHHHHhhhhHHHHHHHHHHHHHHcCCChHHHH
Confidence 99999999999999999998731 11112236799999999999999998999999999999998775 7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhcCCccccCCcccchhhccchHHHHHHHhhccHHHHHHHHHHhCCCChHhHHHHHHHH
Q 019339 215 VEVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVGTDIEDYKCSWLVVKALELCNEEQKKLVHENYGKVDPACVAKVKELY 294 (342)
Q Consensus 215 ~~l~~~g~~lG~afQi~DDlld~~~~~~~~GK~~~Dl~~gk~Tlp~l~al~~~~~~~~~~l~~~~~~~~~~~~~~i~~li 294 (342)
+.+++||.++|+||||+||++|++++++.+||.|+|+++||+|||++++++.+++++++.|.+++++.++++++++++++
T Consensus 261 ~~l~~~g~~lGlaFQI~DDiLD~~gd~~~~GK~g~Dl~egK~T~pvi~al~~~~~~~r~~L~~~~~~~~~~~v~~v~~l~ 340 (390)
T 3dyh_A 261 GVTEELAMLMGEYFQVQDDVMDCFTPPERLGKVGTDIQDAKCSWLAVTFLAKASSAQVAEFKANYGSGDSEKVATVRRLY 340 (390)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCHHHHSSCCCTTTTTCCCHHHHHHHHHCCHHHHHHHHTTTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCChHHhCCCcchhhcCCccHHHHHHHHhCCHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999888889999999999
Q ss_pred HHcChHHHHHHHHHHHHHHHHHHhhcCCChH--HHHHHHHHHHHHhhccC
Q 019339 295 KTLDLEGAFVEYEKESYEKLTKSIEAHPTKE--VQAVLKSFLAKIYKRQK 342 (342)
Q Consensus 295 ~~~g~~~~~~~~~~~~~~~a~~~l~~lp~~~--~~~~L~~l~~~~~~R~~ 342 (342)
+++|++++++++++++.++|++.|+.+|.++ .++.|..|++++++|+|
T Consensus 341 ~~~g~~~~~~~~~~~~~~~a~~~i~~l~~~~~~~~~~l~~l~~~i~~R~k 390 (390)
T 3dyh_A 341 EEADLQGDYVAYEAAVAEQVKELIEKLRLCSPGFAASVETLWGKTYKRQK 390 (390)
T ss_dssp HHTTHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTTTTCCC
T ss_pred HHCCcHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999999999999876 48999999999999987
No 5
>1yhl_A Farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, bisphosphonate, dimethyl ALLY pyrophosphate sulfate, FPPS, transferase; HET: DMA RIS; 1.95A {Trypanosoma cruzi} PDB: 1yhk_A* 1yhm_A* 3iba_A* 3ick_A* 3icm_A* 3icn_A* 3icz_A* 3id0_A*
Probab=100.00 E-value=2.2e-68 Score=512.95 Aligned_cols=337 Identities=38% Similarity=0.650 Sum_probs=296.9
Q ss_pred HHHHHHHHHHHHHHHhCCC--CCCCCcchHHHHHHHhhcccCCCccchHHHHHHHHHHhhCCC-CCChHH----HHHHHH
Q 019339 5 KSRFIEVYGVLKQELLNDP--AFEFDHDSRQWVDRMLDYNVPGGKLNRGLSVVDSYRLLKEGK-ELTDDE----FFLSSA 77 (342)
Q Consensus 5 ~~~f~~~~~~l~~~l~~~~--~~~~~~~~~~~l~~~~~~~~~~GK~~Rp~l~~~~~~~~~~g~-~~~~~~----~~~a~~ 77 (342)
.+.|+++|+.+.+++.... .....+...+++.++++|...|||++||++|+++++++ |+. ..+++. +..|..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~gGKrlRp~l~l~~~~~~-~~~~~~~~~~~~~~~~~a~~ 82 (362)
T 1yhl_A 4 MERFLSVYDEVQAFLLDQLQSKYEIDPNRARYLRIMMDTTCLGGKYFRGMTVVNVAEGF-LAVTQHDEATKERILHDACV 82 (362)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH-HTTSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHhhcCCcccHHHHHHHHHHHHh-CCCcCCChhhhHHHHHHHHH
Confidence 3489999999998888632 22344556688999999998999999999999999999 342 112333 334445
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCCCCcCcccccccccch-hhHhhhHHHHHHHHHHHHHcccCCCchHHHHHHHHHHHHHH
Q 019339 78 LGWCIEWLQAYFLVLDDIMDGSHTRRGQPCWFRVPKVG-MIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQ 156 (342)
Q Consensus 78 lA~a~EllH~asLihDDI~D~~~~RRg~p~~~~~~g~~-~ia~~d~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 156 (342)
+|+++|+||+||||||||||+|++|||+||+|++||++ +++|++|+++++.++.++.+...+.+...++++.+++++..
T Consensus 83 ~a~avEliH~asLiHDDI~D~s~~RRG~pt~h~~~g~~~~~Ail~Gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~ 162 (362)
T 1yhl_A 83 GGWMIEFLQAHYLVEDDIMDGSVMRRGKPCWYRFPGVTTQCAINDGIILKSWTQIMAWHYFADRPFLKDLLCLFQKVDYA 162 (362)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCEETTEECGGGSTTTHHHHHHHHHHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccCCCCCCCCCccHHhccCccHhHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999997 58999999999999999988654444568899999999999
Q ss_pred HhHHHHHhcccc-----------ccCcccCCCCCHHHHHHHHHcchhhhhhHHHHHHHHHHcC-CCHHHHHHHHHHHHHH
Q 019339 157 TASGQMIDLITT-----------IEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAG-ENLDKHVEVKDILVQM 224 (342)
Q Consensus 157 ~~~GQ~~d~~~~-----------~~~~~~~~~~~~~~y~~~~~~KTg~l~~~~~~~~ga~lag-~~~~~~~~l~~~g~~l 224 (342)
++.||++|+.+. ..+..+++.+++++|++|+.+|||+|||++||++|++++| ++++..+.+++||.++
T Consensus 163 ~~~GQ~ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~KTa~Ls~~~~~~~ga~lag~~~~~~~~~l~~~g~~l 242 (362)
T 1yhl_A 163 TAVGQMYDVTSMCDSNKLDPEVAQPMTTDFAEFTPAIYKRIVKYKTTFYTYLLPLVMGLFVSEAAASVEMNLVERVAHLI 242 (362)
T ss_dssp HHHHHHHHHTTTBCGGGCCTTSCCCBCSSCTTCSHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCGGGSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHccccccccccccccccccccccCCHHHHHHHHHhcCcHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 999999999986 2122222257999999999999999999999999999999 8888899999999999
Q ss_pred HHHHHHHhhhhhhcCCccccCCcccchhhccchHHHHHHHhhccHHHHHHHHHHhCCCChHhHHHHHHHHHHcChHHHHH
Q 019339 225 GIYFQVQDDFLDCFGSPEVIGKVGTDIEDYKCSWLVVKALELCNEEQKKLVHENYGKVDPACVAKVKELYKTLDLEGAFV 304 (342)
Q Consensus 225 G~afQi~DDlld~~~~~~~~GK~~~Dl~~gk~Tlp~l~al~~~~~~~~~~l~~~~~~~~~~~~~~i~~li~~~g~~~~~~ 304 (342)
|+||||+||++|++++++.+||.|+|+++||+|||++++++.+++++++.|.+++++.+++++++++++++++|+.++++
T Consensus 243 G~aFQi~DD~lD~~~d~~~~GK~g~Dl~egK~T~p~l~al~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~g~~~~~~ 322 (362)
T 1yhl_A 243 GEYFQVQDDVMDCFTPPEQLGKVGTDIEDAKCSWLAVTFLGKANAAQVAEFKANYGDKDPAKVAVVKRLYSEANLQADFA 322 (362)
T ss_dssp HHHHHHHHHHHHHHSCHHHHSSCCCTTTTTCCCHHHHHHHTTCCHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHhccCChHHhCCChhhHhcCCchHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 99999999999999999999999999999999999999999999989999999998777888999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCChHHH--HHHHHHHHHHhhccC
Q 019339 305 EYEKESYEKLTKSIEAHPTKEVQ--AVLKSFLAKIYKRQK 342 (342)
Q Consensus 305 ~~~~~~~~~a~~~l~~lp~~~~~--~~L~~l~~~~~~R~~ 342 (342)
++++.+.++|++.|+.+|.++.+ +.|..+++++++|+|
T Consensus 323 ~~~~~~~~~A~~~L~~lp~~~~~~~~~L~~l~~~i~~R~~ 362 (362)
T 1yhl_A 323 AYEAEVVREVESLIEQLKVKSPTFAESVAVVWEKTHKRKK 362 (362)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHhccC
Confidence 99999999999999999998888 999999999999986
No 6
>3mav_A Farnesyl pyrophosphate synthase; PV092040, structural genomics, structural genomics consortium, SGC, transferase, isoprene biosynthesis; 2.10A {Plasmodium vivax} PDB: 3cc9_A* 3ez3_A* 3ldw_A* 3mys_A* 3ph7_A* 3rbm_A* 3ryw_A*
Probab=100.00 E-value=3.5e-68 Score=516.59 Aligned_cols=333 Identities=34% Similarity=0.636 Sum_probs=280.9
Q ss_pred HHHHHHHHHHHHHhCC-CCCCCCcc----hHHHHHHHhhcccCCCccchHHHHHHHHHHhhCCCCCChHHHHHHHHHHHH
Q 019339 7 RFIEVYGVLKQELLND-PAFEFDHD----SRQWVDRMLDYNVPGGKLNRGLSVVDSYRLLKEGKELTDDEFFLSSALGWC 81 (342)
Q Consensus 7 ~f~~~~~~l~~~l~~~-~~~~~~~~----~~~~l~~~~~~~~~~GK~~Rp~l~~~~~~~~~~g~~~~~~~~~~a~~lA~a 81 (342)
.|.++|+.+.+++.++ .....+.. ..+++..+++|.+.||||+||++|+++++++ +|...+++....++.+|++
T Consensus 35 ~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Y~~~GGKRlRP~l~l~~~~~~-~~~~~~~~~~~~~~~~A~a 113 (395)
T 3mav_A 35 FFRNMYDKYRDAFLSHLNEYSLEEEIKEHISKYYKLLFDYNCLGGKNNRGILVILIYEYV-KNRDINSSEWEKAACLAWC 113 (395)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH-HC-CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHHHh-CCCCCCcccHHHHHHHHHH
Confidence 5677777777666651 11112222 2357888899999999999999999999999 4555566677788999999
Q ss_pred HHHHHHHHHHhhhhcCCCCCCcCcccccccccch-hhHhhhHHHHHHHHHHHHHcccCCCchHHHHHHHHHHHHHHHhHH
Q 019339 82 IEWLQAYFLVLDDIMDGSHTRRGQPCWFRVPKVG-MIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASG 160 (342)
Q Consensus 82 ~EllH~asLihDDI~D~~~~RRg~p~~~~~~g~~-~ia~~d~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~G 160 (342)
+|+||+||||||||||+|++|||+||||++||++ ++++||++++.+.++.++.....+.+...++++.+++++..++.|
T Consensus 114 iEliH~asLiHDDImD~s~~RRG~pt~h~~~g~~~Ail~GD~ll~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~G 193 (395)
T 3mav_A 114 IEILQAAFLVADDIMDKGEMRRNKYCWYLLKDVETKNAVNDVLLLYNSIYKLIEIYLRNESCYVDVIATFRDATLKTIIG 193 (395)
T ss_dssp HHHHHHHHHHHHHHHTTCSEETTEECGGGSTTTHHHHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHhcCCCCCCCchhhhhccchHHHHHhhhHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998 889999999888888888876666666789999999999999999
Q ss_pred HHHhccccccC-------------------cccCCCCCHHHHHHHHHcchhhhhhHHHHHHHHHHcCCC--HHHHHHHHH
Q 019339 161 QMIDLITTIEG-------------------EKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAGEN--LDKHVEVKD 219 (342)
Q Consensus 161 Q~~d~~~~~~~-------------------~~~~~~~~~~~y~~~~~~KTg~l~~~~~~~~ga~lag~~--~~~~~~l~~ 219 (342)
|.+|+.+.... ..+...+++++|++|+.+|||+|+|.+||.+|++++|++ ++..+.+++
T Consensus 194 Q~lDl~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~t~~~Y~~ii~~KTa~L~~~~~~~~ga~~ag~~~d~~~~~~l~~ 273 (395)
T 3mav_A 194 QHLDTNIFSDKYSDAHREIDVNNINVPEQPVIDINMINFGVYKNIVIHKTAYYSFFLPIVCGMLLAGIAVDNLIYKKIED 273 (395)
T ss_dssp HHHHHHTTSHHHHCC-CCCCSSCSSSCCCCCCCGGGCSHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCCTTCTHHHHHHH
T ss_pred HHHHHHHHhccchhHHHHhhhcccccchhcccccccCCHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhHHHHHHHH
Confidence 99999865421 112235789999999999999998999999999999874 345789999
Q ss_pred HHHHHHHHHHHHhhhhhhcCCccccCCcccchhhccchHHHHHHHhhccHHHHHHHHHHhCCCChHhHHHHHHHHHHcCh
Q 019339 220 ILVQMGIYFQVQDDFLDCFGSPEVIGKVGTDIEDYKCSWLVVKALELCNEEQKKLVHENYGKVDPACVAKVKELYKTLDL 299 (342)
Q Consensus 220 ~g~~lG~afQi~DDlld~~~~~~~~GK~~~Dl~~gk~Tlp~l~al~~~~~~~~~~l~~~~~~~~~~~~~~i~~li~~~g~ 299 (342)
||.++|+||||+||++|++++++.+||+|+||++||+|||++++++++++++++.|.+++++.++++++.++++++++|+
T Consensus 274 ~g~~lG~aFQI~DDiLD~~gd~~~~GK~g~Dl~egK~T~p~i~al~~~~~~~r~~L~~~~~~~d~~~~~~v~~l~~~~g~ 353 (395)
T 3mav_A 274 ISMLMGEYFQIHDDYLDIFGDSTKTGKVGSDIQNNKLTWPLIKTFELCSEPDKIKIVKNYGKNNLACVKVIDSLYEQYKI 353 (395)
T ss_dssp HHHHHHHHHHHHHHHHHHC--------CCCTTTTTCCCHHHHHHHHHSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHHHHhcCCHhhhcccccHHhcCCchHHHHHHHHhCCHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCc
Confidence 99999999999999999999999999999999999999999999999999999999999998888889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhc
Q 019339 300 EGAFVEYEKESYEKLTKSIEAHPTKEVQAVLKSFLAKIYKR 340 (342)
Q Consensus 300 ~~~~~~~~~~~~~~a~~~l~~lp~~~~~~~L~~l~~~~~~R 340 (342)
.++++++++.+.++|...|+.+|++..+..|+.+++.+++|
T Consensus 354 ~~~~~~~~~~~~~~a~~~l~~l~~~~l~~ll~~lle~i~~~ 394 (395)
T 3mav_A 354 RKHYESYEKAQKAKILSAINELHHEGIEYVLKYLLEILFTG 394 (395)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999988875
No 7
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus}
Probab=100.00 E-value=2.4e-67 Score=500.35 Aligned_cols=317 Identities=19% Similarity=0.223 Sum_probs=265.6
Q ss_pred HHHHHHHHHHHHHhC-CCCC-CCCcch-HHHHHHHhhccc-CCCccchHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHH
Q 019339 7 RFIEVYGVLKQELLN-DPAF-EFDHDS-RQWVDRMLDYNV-PGGKLNRGLSVVDSYRLLKEGKELTDDEFFLSSALGWCI 82 (342)
Q Consensus 7 ~f~~~~~~l~~~l~~-~~~~-~~~~~~-~~~l~~~~~~~~-~~GK~~Rp~l~~~~~~~~~~g~~~~~~~~~~a~~lA~a~ 82 (342)
+|.+++..+++++.. +..+ +..... ++.+.+++.|.+ .|||++||++|+++++++ |+. ++ .+..+|+++
T Consensus 10 ~~~~l~~~l~~~l~~v~~~l~~~~~~~~~~~l~~~~~y~~~~gGKrlRp~l~l~~~~~~-g~~---~~---~~~~~A~ai 82 (341)
T 3mzv_A 10 PHDRLAQALAEDMAAVNALIRERMSSEHAPRIPEVTAHLIEAGGKRLRPMLTLAAARLV-GYG---GP---FHVHLAATV 82 (341)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHSCCSSCTHHHHHHHHHHHSCCCCHHHHHHHHHHHHT-TCC---CS---HHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHhCCCCcHHHHHHHHHHHHh-CCC---HH---HHHHHHHHH
Confidence 577778888888777 3211 111122 467999999998 999999999999999999 442 22 356899999
Q ss_pred HHHHHHHHHhhhhcCCCCCCcCcccccccccchhhHhhhHHHHHHHHHHHHHcccCCCchHHHHHHHHHHHHHHHhHHHH
Q 019339 83 EWLQAYFLVLDDIMDGSHTRRGQPCWFRVPKVGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQM 162 (342)
Q Consensus 83 EllH~asLihDDI~D~~~~RRg~p~~~~~~g~~~ia~~d~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~ 162 (342)
|+||+||||||||||+|++|||+||+|.+||++ ++|+.|+++++.++..+.+.. ..++++.+++++..++.||.
T Consensus 83 EliH~asLiHDDI~D~s~~RRG~pt~h~~~G~~-~AIl~GD~L~~~a~~~l~~~~-----~~~~~~~~~~~~~~~~~GQ~ 156 (341)
T 3mzv_A 83 EFIHTATLLHDDVVDESRQRRGRPTANLLWDNK-SSVLVGDYLFARSFQLMTDTG-----NMRVMEILANASAVIAEGEV 156 (341)
T ss_dssp HHHHHHHHHHHHC------CTTSCCHHHHSCHH-HHHHHHHHHHHHHHHHHGGGC-----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCccCCCCCcCCCccHHHhcChH-HHHHHHHHHHHHHHHHHHhCC-----cHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999987 455555566678888888752 36788999999999999999
Q ss_pred HhccccccCcccCCCCCHHHHHHHHHcchhhhhhHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcc
Q 019339 163 IDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPE 242 (342)
Q Consensus 163 ~d~~~~~~~~~~~~~~~~~~y~~~~~~KTg~l~~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DDlld~~~~~~ 242 (342)
+|+.+..+. .+++++|++|+.+|||+| |++||++|++++|++++..+.+++||.++|+||||+||++|++++++
T Consensus 157 ~dl~~~~~~-----~~t~~~y~~~i~~KTa~L-~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DD~ld~~~d~~ 230 (341)
T 3mzv_A 157 LQLTAAQNL-----ATTEDIYLRVIRGKTAAL-FSAATEVGGIIGGAPEDQVQALFDYGDALGIAFQIVDDLLDYGGKSA 230 (341)
T ss_dssp HHHHHTTCT-----TCCHHHHHHHHHHHTHHH-HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHhccCC-----CCCHHHHHHHHHcchHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChh
Confidence 999986532 579999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred ccCC-cccchhhccchHHHHHHHhhccHHHHHHHHHHhCCC--ChHhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHhh
Q 019339 243 VIGK-VGTDIEDYKCSWLVVKALELCNEEQKKLVHENYGKV--DPACVAKVKELYKTLDLEGAFVEYEKESYEKLTKSIE 319 (342)
Q Consensus 243 ~~GK-~~~Dl~~gk~Tlp~l~al~~~~~~~~~~l~~~~~~~--~~~~~~~i~~li~~~g~~~~~~~~~~~~~~~a~~~l~ 319 (342)
.+|| .|+|+++||+|||++++++.+++++++.|.+++++. +++++++++++++++|++++++..++.|.++|++.|+
T Consensus 231 ~~GK~~g~Dl~egK~Tlp~i~al~~~~~~~~~~l~~~l~~~~~~~~~~~~i~~~l~~~ga~~~a~~~a~~~~~~A~~~L~ 310 (341)
T 3mzv_A 231 EIGKNTGDDFRERKLTMPVIKAVALADEAERAFWKRVIEKGDQQDGDLEHAMALMTKHGTLEATRLAAIGWTDTARKALA 310 (341)
T ss_dssp -----CCHHHHTTCCCHHHHHHHHTCCHHHHHHHHHHTTSCCCCTTHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHT
T ss_pred hcCCCCCcccccCchhHHHHHHHHhCCHhHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999 899999999999999999999999999999999765 5678999999999999999999999999999999999
Q ss_pred cCCChHHHHHHHHHHHHHhhccC
Q 019339 320 AHPTKEVQAVLKSFLAKIYKRQK 342 (342)
Q Consensus 320 ~lp~~~~~~~L~~l~~~~~~R~~ 342 (342)
.+|+++.++.|..+++++++|++
T Consensus 311 ~lp~~~~~~~L~~la~~~~~r~~ 333 (341)
T 3mzv_A 311 KLPDHPLRQMLDDLADYVVERVR 333 (341)
T ss_dssp TSCCCHHHHHHHHHHHHHTGGGC
T ss_pred hCCCCHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999974
No 8
>3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.7e-67 Score=500.37 Aligned_cols=316 Identities=20% Similarity=0.199 Sum_probs=258.5
Q ss_pred HHHHHHHHHHHHHhC-CC-CCCCCcchHHHHHHHhhccc-CCCccchHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHH
Q 019339 7 RFIEVYGVLKQELLN-DP-AFEFDHDSRQWVDRMLDYNV-PGGKLNRGLSVVDSYRLLKEGKELTDDEFFLSSALGWCIE 83 (342)
Q Consensus 7 ~f~~~~~~l~~~l~~-~~-~~~~~~~~~~~l~~~~~~~~-~~GK~~Rp~l~~~~~~~~~~g~~~~~~~~~~a~~lA~a~E 83 (342)
++.+++..+++++.. +. ..+.....++++.+++.|.+ .|||++||++|+++++++ |+ +++ .++++|+++|
T Consensus 5 ~~~~~~~~i~~~l~~v~~~l~~~~~~~~~~l~~~~~y~~~~gGKrlRp~l~l~~~~~~-g~---~~~---~~~~~A~aiE 77 (334)
T 3rmg_A 5 SISLIKTPIEAELEDFKALFDTPLSDSNALLDSVITHIRKRNGKMMRPILVLLVARLY-GA---VTP---ATLHAAVSLE 77 (334)
T ss_dssp HHHHHHGGGHHHHHHHHHHTC----CCCHHHHHHHHHTCC----CHHHHHHHHHHHHH-SC---CCH---HHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHhCCCCcHHHHHHHHHHHHh-CC---ChH---HHHHHHHHHH
Confidence 467788888888887 32 33333345688999999999 899999999999999999 44 222 3568999999
Q ss_pred HHHHHHHHhhhhcCCCCCCcCcccccccccchhhHhhhHHHHHHHHHHHHHcccCCCchHHHHHHHHHHHHHHHhHHHHH
Q 019339 84 WLQAYFLVLDDIMDGSHTRRGQPCWFRVPKVGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMI 163 (342)
Q Consensus 84 llH~asLihDDI~D~~~~RRg~p~~~~~~g~~~ia~~d~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~~ 163 (342)
+||+||||||||||+|++|||+||+|++||++ ++|+.|+++++.++..+.+.. ..++++.+++++..++.||.+
T Consensus 78 liH~asLiHDDI~D~s~~RRG~pt~h~~~G~~-~AIl~GD~L~~~a~~~l~~~~-----~~~~~~~~~~~~~~~~~GQ~l 151 (334)
T 3rmg_A 78 LLHTASLVHDDVVDESTERRGQLSVNAIFNNK-VSVLAGDYLLATSLVHAEQTN-----NYEIIRLVSSLGQKLAEGELL 151 (334)
T ss_dssp HHHHHHHHHHHHHC---------CHHHHHHHH-HHHHHHHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCccCCCCCcCCCccHHHhcChH-HHHHHHHHHHHHHHHHHHhCC-----cHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999987 345555555577788887641 367889999999999999999
Q ss_pred hccccccCcccCCCCCHHHHHHHHHcchhhhhhHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCccc
Q 019339 164 DLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEV 243 (342)
Q Consensus 164 d~~~~~~~~~~~~~~~~~~y~~~~~~KTg~l~~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DDlld~~~~~~~ 243 (342)
|+.+..+. .+++++|++|+.+|||+| |+++|++|++++|++++..+.+++||.++|+||||+||++|++ +++.
T Consensus 152 dl~~~~~~-----~~t~~~y~~~i~~KTa~L-~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~ld~~-~~~~ 224 (334)
T 3rmg_A 152 QLSNVSNH-----SFSEEVYFDVIRKKTAAL-FAACAEAAALSVQVGEEEVAFARLLGEYIGICFQIKDDIFDYF-DSKK 224 (334)
T ss_dssp HHHCCCC-------CCHHHHHHHHHHTHHHH-HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTTS-CC--
T ss_pred HHHhCCCC-----CCCHHHHHHHHcCChHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhccCC-Chhh
Confidence 99987532 579999999999999999 9999999999999999999999999999999999999999999 5788
Q ss_pred cCC-cccchhhccchHHHHHHHhhccHHHHHHHHHHhCCC--ChHhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHhhc
Q 019339 244 IGK-VGTDIEDYKCSWLVVKALELCNEEQKKLVHENYGKV--DPACVAKVKELYKTLDLEGAFVEYEKESYEKLTKSIEA 320 (342)
Q Consensus 244 ~GK-~~~Dl~~gk~Tlp~l~al~~~~~~~~~~l~~~~~~~--~~~~~~~i~~li~~~g~~~~~~~~~~~~~~~a~~~l~~ 320 (342)
+|| .|+|+++||+|||++++++.+++++++.|.+++++. +++++++++++++++|++++++.+++.|.++|++.|+.
T Consensus 225 ~GK~~g~Dl~egK~T~p~i~al~~~~~~~~~~L~~~l~~~~~~~~~~~~v~~~i~~~g~~~~a~~~~~~~~~~A~~~L~~ 304 (334)
T 3rmg_A 225 IGKPTGNDMLEGKLTLPALYALNTTKDAWAEQIAFKVKEGTATPDEIVRLIEFTKDNGGIEYACRTIEQYKKKAFDLLAA 304 (334)
T ss_dssp ----CCHHHHTTCCCHHHHHHHHHHCCHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cCCCchhhhhcCchHHHHHHHHHhCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHh
Confidence 999 899999999999999999998888888999988653 67889999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHhhccC
Q 019339 321 HPTKEVQAVLKSFLAKIYKRQK 342 (342)
Q Consensus 321 lp~~~~~~~L~~l~~~~~~R~~ 342 (342)
+|+++.++.|..+++++++|.+
T Consensus 305 lp~~~~~~~L~~l~~~~~~R~~ 326 (334)
T 3rmg_A 305 LPDSNICLALRTYLDYVVAREK 326 (334)
T ss_dssp SCCCHHHHHHHHHHHHHHHCC-
T ss_pred CCCcHHHHHHHHHHHHHHhccc
Confidence 9999999999999999999975
No 9
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus}
Probab=100.00 E-value=9.8e-68 Score=503.07 Aligned_cols=316 Identities=19% Similarity=0.265 Sum_probs=250.1
Q ss_pred HHHHHHHHHHHHHhC-CCCC-CCCcchHHHHHHHhhccc-CCCccchHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHH
Q 019339 7 RFIEVYGVLKQELLN-DPAF-EFDHDSRQWVDRMLDYNV-PGGKLNRGLSVVDSYRLLKEGKELTDDEFFLSSALGWCIE 83 (342)
Q Consensus 7 ~f~~~~~~l~~~l~~-~~~~-~~~~~~~~~l~~~~~~~~-~~GK~~Rp~l~~~~~~~~~~g~~~~~~~~~~a~~lA~a~E 83 (342)
+|.+.+..+++++.+ +..+ +.....++.+.+++.|.+ .||||+||++|+++++++ |+. ++ .+.++|+++|
T Consensus 23 ~~~~l~~~l~~~l~~v~~~l~~~l~~~~~~l~~~~~y~~~~gGKrlRp~l~ll~~~~~-g~~---~~---~~~~~A~aiE 95 (345)
T 3oyr_A 23 SVDRLVRLAEADMAGVNRLITDRMQSDVAIIPALAEHLIAAGGKRLRPLMTVAAARLA-GAD---ND---HFQKLAAAVE 95 (345)
T ss_dssp CSHHHHHHTHHHHHHHHHHHHHHTCCSSTHHHHHHHHHHTTTCCCHHHHHHHHHHHHT-TCC---SS---THHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHHHHHhCCCCcHHHHHHHHHHHHh-CCC---HH---HHHHHHHHHH
Confidence 466777777777776 3211 222233567999999988 999999999999999999 442 22 3568999999
Q ss_pred HHHHHHHHhhhhcCCCCCCcCcccccccccchhhHhhhHHHHHHHHHHHHHcccCCCchHHHHHHHHHHHHHHHhHHHHH
Q 019339 84 WLQAYFLVLDDIMDGSHTRRGQPCWFRVPKVGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMI 163 (342)
Q Consensus 84 llH~asLihDDI~D~~~~RRg~p~~~~~~g~~~ia~~d~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~~ 163 (342)
+||+||||||||||+|++|||+||+|.+||++ ++|+.|+++++.++.++.+.. ..++++.+++++..++.||.+
T Consensus 96 liH~asLiHDDi~D~s~~RRG~pt~h~~~G~~-~AIl~GD~Ll~~a~~~l~~~~-----~~~~~~~~~~~~~~~~~GQ~~ 169 (345)
T 3oyr_A 96 FIHTATLLHDDVVDGSQLRRGKVAAHLIWGGA-QSVLVGDFLFARAFELMVETN-----SMKALEILARASRVIAEGEVL 169 (345)
T ss_dssp HHHHHHHHTTTTC---------CCCSCCTTHH-HHHHHHHHHHHHHHHHHHTTT-----CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCcccCCCCCCCCCccHHHhhCHH-HHHHHHHHHHHHHHHHHHhCC-----cHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999987 455555555678888888652 367889999999999999999
Q ss_pred hccccccCcccCCCCCHHHHHHHHHcchhhhhhHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCccc
Q 019339 164 DLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEV 243 (342)
Q Consensus 164 d~~~~~~~~~~~~~~~~~~y~~~~~~KTg~l~~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DDlld~~~~~~~ 243 (342)
|+.+..+. .+++++|++|+.+|||+| |+++|++|++++|++++..+.+++||.++|+||||+||++|++++++.
T Consensus 170 dl~~~~~~-----~~~~~~y~~~i~~KTa~L-~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~lD~~~d~~~ 243 (345)
T 3oyr_A 170 QLMRSHDL-----NLSQAVYLEIIQAKTAEL-FAAASEAGAVSAGVDVAKSEALRDYGLNLGLAFQLADDALDYGGATET 243 (345)
T ss_dssp HHHTSSCS-----SCCHHHHHHHHHHHTHHH-HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTC------
T ss_pred HHHcCCCC-----CCCHHHHHHHHHcchHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhh
Confidence 99986532 579999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred cCC-cccchhhccchHHHHHHHhhccHHHHHHHHHHhCCC--ChHhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHhhc
Q 019339 244 IGK-VGTDIEDYKCSWLVVKALELCNEEQKKLVHENYGKV--DPACVAKVKELYKTLDLEGAFVEYEKESYEKLTKSIEA 320 (342)
Q Consensus 244 ~GK-~~~Dl~~gk~Tlp~l~al~~~~~~~~~~l~~~~~~~--~~~~~~~i~~li~~~g~~~~~~~~~~~~~~~a~~~l~~ 320 (342)
+|| .|+|+++||+|||++++++..++++++.+.+++++. +++++++++++++++|++++++..++.|.++|++.|+.
T Consensus 244 ~GK~~g~Dl~egK~TlP~i~al~~~~~~~~~~l~~~l~~~~~~~~~~~~v~~~i~~~gale~a~~~a~~~~~~A~~~L~~ 323 (345)
T 3oyr_A 244 LGKNAGDDFREGKATLPLLLAIARSGPREAEFWERAIGRREQTEADFRRARELIIGSGALDATLDLAADYADKAKAALAM 323 (345)
T ss_dssp -------------CCHHHHHHHHHSCSHHHHHHHHHCC----CCSSHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTTT
T ss_pred cCCCccchhhcCchHHHHHHHHHhCCHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHh
Confidence 999 899999999999999999999888999999999775 46789999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHhhcc
Q 019339 321 HPTKEVQAVLKSFLAKIYKRQ 341 (342)
Q Consensus 321 lp~~~~~~~L~~l~~~~~~R~ 341 (342)
+|+++.++.|..+++++++|+
T Consensus 324 lp~~~~~~~L~~la~~~~~R~ 344 (345)
T 3oyr_A 324 FPANDWREALEELADFAVSRR 344 (345)
T ss_dssp SCSSHHHHHHHHHHHHHHHC-
T ss_pred CCCcHHHHHHHHHHHHHHhcc
Confidence 999999999999999999996
No 10
>1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii}
Probab=100.00 E-value=3.2e-67 Score=501.33 Aligned_cols=297 Identities=23% Similarity=0.244 Sum_probs=269.1
Q ss_pred HHHHHHHhhccc-CCCccchHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCcCcccccc
Q 019339 32 RQWVDRMLDYNV-PGGKLNRGLSVVDSYRLLKEGKELTDDEFFLSSALGWCIEWLQAYFLVLDDIMDGSHTRRGQPCWFR 110 (342)
Q Consensus 32 ~~~l~~~~~~~~-~~GK~~Rp~l~~~~~~~~~~g~~~~~~~~~~a~~lA~a~EllH~asLihDDI~D~~~~RRg~p~~~~ 110 (342)
++.+.+++.|.+ .|||++||++|+++++++ |+ +++ .++++|+++|+||+||||||||||+|++|||+||+|.
T Consensus 31 ~~~l~~~~~~~~~~gGKrlRp~l~l~~~~~~-g~---~~~---~~~~~A~avEliH~asLiHDDi~D~s~~RRG~pt~h~ 103 (342)
T 1wy0_A 31 PRVLYEAARHYPLAGGKRVRPFVVLTSTEAV-GG---DPL---RAIYPAVAIELIHNYSLVHDDIMDMDETRRGKPTVHR 103 (342)
T ss_dssp SHHHHHHHHHTGGGTCCCHHHHHHHHHTTTT-TS---CGG---GGHHHHHHHHHHHHHHHHHHHHHHTCCCSTTSCCHHH
T ss_pred cHHHHHHHHHHHhCCCccHHHHHHHHHHHHc-CC---CHH---HHHHHHHHHHHHHHHHHHHCCcccCCCCCCCCCcccc
Confidence 466888999887 999999999999999998 44 222 3578999999999999999999999999999999999
Q ss_pred cccchhhHhhhHHHHHHHHHHHHHcccCCCchHHHHHHHHHHHHHHHhHHHHHhccccccCcccCCCCCHHHHHHHHHcc
Q 019339 111 VPKVGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYK 190 (342)
Q Consensus 111 ~~g~~~ia~~d~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~~d~~~~~~~~~~~~~~~~~~y~~~~~~K 190 (342)
+||++ ++|+.|+++++.++..+.+...+.+...++++.+++++..++.||.+|+.|..+. ..++++|++|+.+|
T Consensus 104 ~~G~~-~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~~dl~~~~~~-----~~~~~~y~~~i~~K 177 (342)
T 1wy0_A 104 IWGVN-MAILAGDLLFSKAFEAVARAEIPPEKKARVLEVIVKASNELCEGQARDLEFEKKS-----TVTIEEYMEMISGK 177 (342)
T ss_dssp HHCHH-HHHHHHHHHHHHHHHHHHTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCS-----CCCHHHHHHHHHHH
T ss_pred ccChh-HHHHHHHHHHHHHHHHHHHcccCcccHHHHHHHHHHHHHHHHHHHHHHHHcccCC-----CCCHHHHHHHHHHh
Confidence 99987 5677777777889999988644444567899999999999999999999987532 46999999999999
Q ss_pred hhhhhhHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCccccCC-cccchhhccchHHHHHHHhhccH
Q 019339 191 TAYYSFYLPVACALLMAGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGK-VGTDIEDYKCSWLVVKALELCNE 269 (342)
Q Consensus 191 Tg~l~~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DDlld~~~~~~~~GK-~~~Dl~~gk~Tlp~l~al~~~~~ 269 (342)
||+| |++||++|++++|++++..+.+++||.++|+||||+||++|++++++.+|| .|+|+++||+|||++++++.+++
T Consensus 178 Ta~L-~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DD~lD~~~d~~~~GK~~g~Dl~egK~Tlp~i~al~~~~~ 256 (342)
T 1wy0_A 178 TGAL-FEASAKVGGIIGTDNEEYIKALSSWGRNVGIAFQIWDDVLDLIADEKKLGKPVGSDIRKGKKTLIVAHFFENADE 256 (342)
T ss_dssp THHH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHTSCSCHHHHHTCCCHHHHHHHHHCCH
T ss_pred hHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhhCCCchhHHhCCCCcHHHHHHHHhCCH
Confidence 9999 999999999999999999999999999999999999999999999999999 89999999999999999999999
Q ss_pred HHHHHHHHHhCCCC-------------hHhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHH
Q 019339 270 EQKKLVHENYGKVD-------------PACVAKVKELYKTLDLEGAFVEYEKESYEKLTKSIEAHPTKEVQAVLKSFLAK 336 (342)
Q Consensus 270 ~~~~~l~~~~~~~~-------------~~~~~~i~~li~~~g~~~~~~~~~~~~~~~a~~~l~~lp~~~~~~~L~~l~~~ 336 (342)
++++.|.+++++.+ ++++++++++++++|++++++++++.+.++|++.|+.+|+++.++.|..++++
T Consensus 257 ~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~A~~~L~~l~~~~~~~~L~~l~~~ 336 (342)
T 1wy0_A 257 KDKQRFLKIFGKYAGDVKGRGIIEEDIKSDVMEAIDLLKKYGSIDYAAEIAKDMIKKANEALRILPKSKARMDLELLAKF 336 (342)
T ss_dssp HHHHHHHHTSCC-------------CHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHTTGGGSCCCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHcccccccccccccccCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 89999999998754 66789999999999999999999999999999999999999999999999999
Q ss_pred HhhccC
Q 019339 337 IYKRQK 342 (342)
Q Consensus 337 ~~~R~~ 342 (342)
+++|++
T Consensus 337 ~~~R~~ 342 (342)
T 1wy0_A 337 IVEREY 342 (342)
T ss_dssp TTTCC-
T ss_pred HHhccC
Confidence 999975
No 11
>2her_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structural genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A* 2q58_A*
Probab=100.00 E-value=1.1e-67 Score=505.09 Aligned_cols=321 Identities=28% Similarity=0.439 Sum_probs=280.2
Q ss_pred hhHHHHHHHHHHHHHHHhCC-CCCCCCcchH----HHHHHHhhcccCCCccchHHHHHHHHHHhhCCCCCChHHHHHHHH
Q 019339 3 DLKSRFIEVYGVLKQELLND-PAFEFDHDSR----QWVDRMLDYNVPGGKLNRGLSVVDSYRLLKEGKELTDDEFFLSSA 77 (342)
Q Consensus 3 ~~~~~f~~~~~~l~~~l~~~-~~~~~~~~~~----~~l~~~~~~~~~~GK~~Rp~l~~~~~~~~~~g~~~~~~~~~~a~~ 77 (342)
.++++|+.+|+.+.+++.+. .....+.... +++.++++|...||||+||++|+++++++ |+ .+++....+..
T Consensus 23 ~~~~~f~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~y~~~GGKrlRp~l~l~~~~~~-g~--~~~~~~~~~~~ 99 (368)
T 2her_A 23 YDYTDFINYYDKFKVIVYNVLKKLPLNDEIRKPVIEYYLNCIDYNVKKGKHIRGKILVLISSLS-SA--YSNIKRDSIYL 99 (368)
T ss_dssp CCCTTGGGTHHHHHHHHHTTCCCCTTSCCTTTTHHHHHHHHHHHHTTSSTTTTTC-CHHHHTTT-TC--CCSSSHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHhhCCCCccchHHHHHHHHHh-CC--CCcccHHHHHH
Confidence 45679999999999999993 4455554444 89999999999999999999999999999 44 23333456789
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCCCCcCcccccccccchhhHhhhHHHHH---HHHHHHHHcccCCCchHHHHHHHHHHHH
Q 019339 78 LGWCIEWLQAYFLVLDDIMDGSHTRRGQPCWFRVPKVGMIAANDGVLLR---NHISRILKNHFRDKPYYVDLLDLFNEVE 154 (342)
Q Consensus 78 lA~a~EllH~asLihDDI~D~~~~RRg~p~~~~~~g~~~ia~~d~~~l~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 154 (342)
+|+++|+||+||||||||||+|++|||+||||++||.. +||++|++++ +.++.++.+.+...+ ..++++.+++++
T Consensus 100 ~A~avEllH~asLIHDDImD~s~~RRG~pt~h~~~G~~-~AIl~GD~L~~~a~~a~~ll~~~~~~~~-~~~~~~~~~~~~ 177 (368)
T 2her_A 100 LGWVVEAIQALILIADDIMDSGKFRRGAPCWYIVHGQS-NAINDIFFLKMLSLSLIFELSSVFGNDI-VMKIQKIYNESI 177 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCEETTEECHHHHTHHH-HHHHHHHHHHHHHHHHHTTTHHHHCHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcccccCCCCCCCCccHHhcCChH-HHHHHHHHHHHHHHHHHHHHHHhcCcCh-HHHHHHHHHHHH
Confidence 99999999999999999999999999999999999987 4666666666 667777765432222 468999999999
Q ss_pred HHHhHHHHHhccccccCcccCCCCCH-HHHHHHHHcchhhhhhHHHHHHHHHHcCCCHHH--HHHHHHHHHHHHHHHHHH
Q 019339 155 FQTASGQMIDLITTIEGEKDLSKYSL-PLHRRIVQYKTAYYSFYLPVACALLMAGENLDK--HVEVKDILVQMGIYFQVQ 231 (342)
Q Consensus 155 ~~~~~GQ~~d~~~~~~~~~~~~~~~~-~~y~~~~~~KTg~l~~~~~~~~ga~lag~~~~~--~~~l~~~g~~lG~afQi~ 231 (342)
..++.||.+|+.+...++ ..+. ++|++|+.+|||+|||++||++|++++|++++. .+.+++||.++|+||||+
T Consensus 178 ~~~~~GQ~lDl~~~~~~~----~~~~~~~y~~ii~~KTa~Lsf~~~~~lGa~lag~~~~~~~~~~l~~~g~~lG~aFQI~ 253 (368)
T 2her_A 178 FFTVLGQHLDLSYFDLSK----ADKISERYFSMVEMKTSRYTFYMPVFFGLTLSEIQVSSAQLNLIEAILYKLGEFYQVH 253 (368)
T ss_dssp HHHHHHHHHHHCSCCCSS----CSSHHHHHHHHHHHHTHHHHTHHHHHHHHHHSCCCCCCSSTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCC----CCChHHHHHHHHHccchHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999875431 1234 999999999999999999999999999998887 899999999999999999
Q ss_pred hhhhhhcCCccccCCcccchhhccchHHHHHHHhhccHHHHHHHHHHhCCCChHhHHHHHHHHHHcChHHHHHHHHHHHH
Q 019339 232 DDFLDCFGSPEVIGKVGTDIEDYKCSWLVVKALELCNEEQKKLVHENYGKVDPACVAKVKELYKTLDLEGAFVEYEKESY 311 (342)
Q Consensus 232 DDlld~~~~~~~~GK~~~Dl~~gk~Tlp~l~al~~~~~~~~~~l~~~~~~~~~~~~~~i~~li~~~g~~~~~~~~~~~~~ 311 (342)
||++|++ .+||.|+||++||+|||++++++.+++++++.|.+++++.+ +.++++++++|++++++++++.+.
T Consensus 254 DD~LD~~----~~GK~g~Dl~egK~T~pvi~al~~a~~~~r~~L~~~~~~~~----~~v~~li~~~g~~~~~~~~~~~~~ 325 (368)
T 2her_A 254 NDVSDYL----FNDSNADDICRFKLTWPLQKSFEIADEEMKLKISENYGKNS----SLVKDCYNLLKINEHYLEYQRNAL 325 (368)
T ss_dssp HHHHHHH----SCCSSSCTTTTTCCCHHHHSSTTTCCHHHHHHHHHHTTTCH----HHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHH----hcCCCCChHhCCcccHHHHHHHHhCCHHHHHHHHHHhCCcH----HHHHHHHHHCCcHHHHHHHHHHHH
Confidence 9999999 67999999999999999999999999999999999997653 889999999999999999999999
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHHhhc
Q 019339 312 EKLTKSIEAHPTKEVQAVLKSFLAKIYKR 340 (342)
Q Consensus 312 ~~a~~~l~~lp~~~~~~~L~~l~~~~~~R 340 (342)
++|++.|+.+|.++.++.|..++++++++
T Consensus 326 ~~A~~~L~~lp~~~~k~~L~~l~~~i~~~ 354 (368)
T 2her_A 326 DYLIKLVKDITDDSLQKVFIHLIHQISEL 354 (368)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999986
No 12
>3lk5_A Geranylgeranyl pyrophosphate synthase; structural genomics, protein structure initiative, geranylge pyrophosphate synthase; 1.90A {Corynebacterium glutamicum} PDB: 3qqv_A*
Probab=100.00 E-value=2.4e-65 Score=492.46 Aligned_cols=301 Identities=24% Similarity=0.323 Sum_probs=246.8
Q ss_pred HHHHHhhcccCCCccchHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCcCccccccc--
Q 019339 34 WVDRMLDYNVPGGKLNRGLSVVDSYRLLKEGKELTDDEFFLSSALGWCIEWLQAYFLVLDDIMDGSHTRRGQPCWFRV-- 111 (342)
Q Consensus 34 ~l~~~~~~~~~~GK~~Rp~l~~~~~~~~~~g~~~~~~~~~~a~~lA~a~EllH~asLihDDI~D~~~~RRg~p~~~~~-- 111 (342)
+++.+.+|+..||||+||+||+++++++ ||...+......++.+|+++|+||+||||||||||+|++|||+||+|++
T Consensus 50 l~~~~~~~~~~gGKrlRp~l~l~~~~~~-g~~~~~~~~~~~~~~~AaaiEliH~asLIHDDImD~s~~RRG~pt~h~~f~ 128 (380)
T 3lk5_A 50 AVAHLRSFVLNGGKRIRPLYAWAGFLAA-QGHKNSSEKLESVLDAAASLEFIQACALIHDDIIDSSDTRRGAPTVHRAVE 128 (380)
T ss_dssp HHHHHHHHHHSCCCCHHHHHHHHHHHHH-HTTSCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHHHhCCCcchhHHHHHHHHHHc-CCCccccCCHHHHHHHHHHHHHHHHHHHHHCCCcCCCCCCCCCcchhHHHH
Confidence 3444445555999999999999999999 4520111123357789999999999999999999999999999999997
Q ss_pred --------------ccchhhHhhhHHHHHHHHHHHHHcccCCCchHHHHHHHHHHHHHHHhHHHHHhccccccCcccCCC
Q 019339 112 --------------PKVGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEGEKDLSK 177 (342)
Q Consensus 112 --------------~g~~~ia~~d~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~~d~~~~~~~~~~~~~ 177 (342)
||++ ++|+.|+++++.++.++.+...+.+...++.+.++.+...++.||++|+.+..+. .
T Consensus 129 ~~~~~~~~~~~~~~~G~~-~AIL~GD~Ll~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~lDl~~~~~~-----~ 202 (380)
T 3lk5_A 129 ADHRANNFEGDPEHFGVS-VSILAGDMALVWAEDMLQDSGLSAEALARTRDAWRGMRTEVIGGQLLDIYLESHA-----N 202 (380)
T ss_dssp --------------CHHH-HHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-----C
T ss_pred HhhhhcccccchhhcCHH-HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-----C
Confidence 5876 4555555566788899987643333456788888888889999999999987542 4
Q ss_pred CCHHHHHHHHHcchhhhhhHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCccccCC-cccchhhccc
Q 019339 178 YSLPLHRRIVQYKTAYYSFYLPVACALLMAGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGK-VGTDIEDYKC 256 (342)
Q Consensus 178 ~~~~~y~~~~~~KTg~l~~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DDlld~~~~~~~~GK-~~~Dl~~gk~ 256 (342)
+++++|++|+.+|||+|+|++||++|++++|++++.++.+++||.++|+||||+||++|++++++.+|| .|+||++||+
T Consensus 203 ~s~~~y~~ii~~KTa~L~~~~~~~~Ga~laga~~~~~~~l~~~G~~lG~AFQI~DDiLd~~gd~~~~GK~~g~Dl~egK~ 282 (380)
T 3lk5_A 203 ESVELADSVNRFKTAAYTIARPLHLGASIAGGSPQLIDALLHYGHDIGIAFQLRDDLLGVFGDPAITGKPAGDDIREGKR 282 (380)
T ss_dssp CCHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHSSCTTHHHHTTCC
T ss_pred CCHHHHHHHHHhhchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhhCCCchhhHhcCCc
Confidence 699999999999999998899999999999999999999999999999999999999999999999999 8999999999
Q ss_pred hHHHHHHHhhcc---HHHHHHHHHHhCCC-ChHhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHhhcCC-ChHHHHHHH
Q 019339 257 SWLVVKALELCN---EEQKKLVHENYGKV-DPACVAKVKELYKTLDLEGAFVEYEKESYEKLTKSIEAHP-TKEVQAVLK 331 (342)
Q Consensus 257 Tlp~l~al~~~~---~~~~~~l~~~~~~~-~~~~~~~i~~li~~~g~~~~~~~~~~~~~~~a~~~l~~lp-~~~~~~~L~ 331 (342)
|||++++++.++ |++++.|.+++++. +++++++++++++++|++++++..++.|.++|++.|+.+| +++.++.|.
T Consensus 283 T~p~i~al~~~~~~~~~~~~~L~~~l~~~~~~~~~~~v~~li~~~Ga~~~~~~~~~~~~~~A~~~L~~lp~~~~~r~~L~ 362 (380)
T 3lk5_A 283 TVLLALALQRADKQSPEAATAIRAGVGKVTSPEDIAVITEHIRATGAEEEVEQRISQLTESGLAHLDDVDIPDEVRAQLR 362 (380)
T ss_dssp CHHHHHHHHHHHHHCHHHHHHHHHHTTTCCSHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHGGGSCCCHHHHHHHH
T ss_pred hHHHHHHHHhCccCChHHHHHHHHHHCCCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 999999999973 56788999998765 5788999999999999999999999999999999999999 578999999
Q ss_pred HHHHHHhhcc
Q 019339 332 SFLAKIYKRQ 341 (342)
Q Consensus 332 ~l~~~~~~R~ 341 (342)
.|++.++.|+
T Consensus 363 ~La~~~~~~~ 372 (380)
T 3lk5_A 363 ALAIRSTERR 372 (380)
T ss_dssp HHHHHHHC--
T ss_pred HHHHHHHHhh
Confidence 9999999875
No 13
>4dhd_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; 1.65A {Pyrobaculum calidifontis} PDB: 4gp1_A* 4gp2_A*
Probab=100.00 E-value=3.3e-65 Score=488.61 Aligned_cols=294 Identities=22% Similarity=0.283 Sum_probs=256.1
Q ss_pred HHHHHHhhccc-CCCccchHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCcCccccccc
Q 019339 33 QWVDRMLDYNV-PGGKLNRGLSVVDSYRLLKEGKELTDDEFFLSSALGWCIEWLQAYFLVLDDIMDGSHTRRGQPCWFRV 111 (342)
Q Consensus 33 ~~l~~~~~~~~-~~GK~~Rp~l~~~~~~~~~~g~~~~~~~~~~a~~lA~a~EllH~asLihDDI~D~~~~RRg~p~~~~~ 111 (342)
+.+.+++.|.+ .||||+||++|+++++++ ||. ++ .++.+|+++|+||+||||||||||+|++|||+||+|++
T Consensus 31 ~~l~~~~~y~~~~gGKrlRp~L~l~~~~~~-g~~---~~---~~~~~A~aiEliH~asLiHDDI~D~s~~RRG~pt~h~~ 103 (358)
T 4dhd_A 31 EDFREAVLYQVKTGGKRLRPLLTLAAAEAV-SGQ---WR---PALPAAAIVELIHNYSLIYDDIIDRGDVRRGLPTVRKA 103 (358)
T ss_dssp HHHHHHHHGGGSSCCCCHHHHHHHHHHHHH-HSC---CG---GGHHHHHHHHHHHHHHHHHHHHHTTCCEETTEECHHHH
T ss_pred HHHHHHHHHHHhCCCCcHHHHHHHHHHHHh-CCC---HH---HHHHHHHHHHHHHHHHHHHCccccCCCCcCCCccHHHh
Confidence 56888999988 999999999999999999 442 22 35789999999999999999999999999999999999
Q ss_pred ccchhhHhhhHHHHHHHHHHHHHcccCCCchHHHHHHHHHHHHHHHhHHHHHhccccccCcc-------cCCCCCHHHHH
Q 019339 112 PKVGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEGEK-------DLSKYSLPLHR 184 (342)
Q Consensus 112 ~g~~~ia~~d~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~~d~~~~~~~~~-------~~~~~~~~~y~ 184 (342)
||++ +||+.|+++++.++.++.+. +...++++.+++++..++.||.+|+.+...+.. +...+++++|+
T Consensus 104 ~G~~-~AIl~GD~L~~~a~~~l~~~----~~~~~~~~~~~~~~~~~~~GQ~ldl~~~~~~~~dp~~~~~~~~~~t~~~y~ 178 (358)
T 4dhd_A 104 FGDN-AAILVGIWYREAIEEAVLDT----PKPTLFAKEVAEVIKAIDEGERLDILFEAAGRSDPYFVQARWREVTLDDYI 178 (358)
T ss_dssp HCHH-HHHHHHHHHHHHHHHHHHTS----SSHHHHHHHHHHHHHHHHHHHHHHHHTBSSCCCCHHHHHTCCSCCCHHHHH
T ss_pred cCHH-HHHHHHHHHHHHHHHHHhCC----ccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccCCCCCCHHHHH
Confidence 9987 56666677778888888532 235789999999999999999999998622111 01156999999
Q ss_pred HHHHcchhhhhhHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCccccCC-cccchhhccc-hHHHHH
Q 019339 185 RIVQYKTAYYSFYLPVACALLMAGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGK-VGTDIEDYKC-SWLVVK 262 (342)
Q Consensus 185 ~~~~~KTg~l~~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DDlld~~~~~~~~GK-~~~Dl~~gk~-Tlp~l~ 262 (342)
+|+.+|||+| |++||++|++++|++++..+.+++||.++|+||||+||++|++++++.+|| .|+|+++||+ |||+++
T Consensus 179 ~~i~~KTa~L-~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DD~lD~~gd~~~~GK~~g~Dl~egK~~T~p~i~ 257 (358)
T 4dhd_A 179 KMVSLKTGAL-IAAAAKWGVLSVSDDRGLAEAAWNFGMAAGVAFQIIDDVLDIYGDPKKFGKEIGKDIKEHKRGNAVVAV 257 (358)
T ss_dssp HHHHHHTHHH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CTTHHHHTTBSCSHHHHH
T ss_pred HHHHcchHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhcCCCchhhHhcCChhhHHHHH
Confidence 9999999999 999999999999999999999999999999999999999999999999999 8999999999 999999
Q ss_pred HHhhccHHHHHHHHHHhCCC--ChHhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhc
Q 019339 263 ALELCNEEQKKLVHENYGKV--DPACVAKVKELYKTLDLEGAFVEYEKESYEKLTKSIEAHPTKEVQAVLKSFLAKIYKR 340 (342)
Q Consensus 263 al~~~~~~~~~~l~~~~~~~--~~~~~~~i~~li~~~g~~~~~~~~~~~~~~~a~~~l~~lp~~~~~~~L~~l~~~~~~R 340 (342)
+++.+++++++.|.+++++. +++++++++++++++|++++++..++.+.++|++.|+.+|+++ .|..|++++++|
T Consensus 258 al~~~~~~~~~~L~~~l~~~~~~~~~~~~i~~li~~~gai~~a~~~a~~~~~~A~~~L~~lp~~~---~L~~la~~~~~R 334 (358)
T 4dhd_A 258 ALSHLGEGERRRLLEILAREVVEEADVREAVALLDSVGAREEALRLAARYREEAERHLAKIPNNG---TLKELLDFIVAR 334 (358)
T ss_dssp HHHHSCHHHHHHHHHHHHCSSCCHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHTTSSSCH---HHHHHHHHHTTT
T ss_pred HHHhCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHcCCCCH---HHHHHHHHHHhc
Confidence 99999999999999999765 5788999999999999999999999999999999999999776 899999999999
Q ss_pred cC
Q 019339 341 QK 342 (342)
Q Consensus 341 ~~ 342 (342)
++
T Consensus 335 ~~ 336 (358)
T 4dhd_A 335 EY 336 (358)
T ss_dssp TT
T ss_pred cc
Confidence 74
No 14
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A*
Probab=100.00 E-value=2.5e-65 Score=488.33 Aligned_cols=290 Identities=20% Similarity=0.187 Sum_probs=243.9
Q ss_pred HHHHHHHhhccc-CCCccchHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCcCcccccc
Q 019339 32 RQWVDRMLDYNV-PGGKLNRGLSVVDSYRLLKEGKELTDDEFFLSSALGWCIEWLQAYFLVLDDIMDGSHTRRGQPCWFR 110 (342)
Q Consensus 32 ~~~l~~~~~~~~-~~GK~~Rp~l~~~~~~~~~~g~~~~~~~~~~a~~lA~a~EllH~asLihDDI~D~~~~RRg~p~~~~ 110 (342)
++.+.+++.|.+ .|||++||++|+++++++ ++. +.+ .++.+|+++|+||+||||||||||+|++|||+||+|.
T Consensus 59 ~~~l~~~~~y~~~~gGKrlRp~L~ll~~~~~-~~~--~~~---~~~~~A~avEliH~asLIHDDImD~s~~RRG~pt~h~ 132 (360)
T 3lmd_A 59 EDFLVDIVMHLTRAGGKRFRPMFALLASEFG-EKP--LSE---NVIKAAVVVEITHLATLYHDDVMDEASMRRGVPSANA 132 (360)
T ss_dssp CHHHHHHHHHHCCCCSCCHHHHHHHHHHTTS-SST--TCH---HHHHHHHHHHHHHHHHHHHHHHHC-----------CH
T ss_pred cHHHHHHHHHHHHCCCCcHHHHHHHHHHHHh-CCC--ChH---HHHHHHHHHHHHHHHHHHhCCCcCCCCCCCCCCcHHh
Confidence 467999999998 999999999999999987 312 222 3568999999999999999999999999999999999
Q ss_pred cccchhhHhhhHHHHHHHHHHHHHcccCCCchHHHHHHHHHHHHHHHhHHHHHhccccccCcccCCCCCHHHHHHHHHcc
Q 019339 111 VPKVGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYK 190 (342)
Q Consensus 111 ~~g~~~ia~~d~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~~d~~~~~~~~~~~~~~~~~~y~~~~~~K 190 (342)
+||++ ++|+.|+++++.++.++++.. .++++.+++++..++.||.+|+.+..+ .+++++|++|+.+|
T Consensus 133 ~~G~~-~AIlaGD~Ll~~A~~~l~~~~------~~~~~~~~~~~~~~~~GQ~ldl~~~~~------~~t~~~y~~~i~~K 199 (360)
T 3lmd_A 133 RWDNS-VAILAGDILLAHASGLMSQLG------TDTVAHFAETFGELVTGQMRETVGPRD------TDPIEHYTNVIREK 199 (360)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHHHHHC------HHHHHHHHHHHHHHHHHHHHHHHCCTT------SCHHHHHHHHHHHH
T ss_pred hcChH-HHHHHHHHHHHHHHHHHHHCC------HHHHHHHHHHHHHHHHHHHHHHhccCC------CCCHHHHHHHHHhh
Confidence 99987 455555556678888888752 378899999999999999999998753 26899999999999
Q ss_pred hhhhhhHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCccccCC-cccchhhccchHHHHHHHhhccH
Q 019339 191 TAYYSFYLPVACALLMAGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGK-VGTDIEDYKCSWLVVKALELCNE 269 (342)
Q Consensus 191 Tg~l~~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DDlld~~~~~~~~GK-~~~Dl~~gk~Tlp~l~al~~~~~ 269 (342)
||+| |+++|++|++++|++++..+.+++||.++|+||||+||++|++++++.+|| .|+|+++||+|||++++++..++
T Consensus 200 Tg~L-~~~a~~lga~laga~~~~~~~l~~~g~~lG~aFQI~DDilD~~~d~~~~GK~~g~Dl~egK~Tlp~l~al~~~~~ 278 (360)
T 3lmd_A 200 TGVL-IASAGYLGAMHAGAAPEHIDALKNFGAAVGMIFQIVDDIIDIFSETHESGKTPGTDLREGVFTLPVLYALREDTP 278 (360)
T ss_dssp THHH-HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------CCHHHHHTCCCHHHHHHHHCCSH
T ss_pred hHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCChhhhCCCchhHHhcCCchHHHHHHHHcCCc
Confidence 9999 999999999999999999999999999999999999999999999999999 89999999999999999999554
Q ss_pred HHHHHHHHHhCCC--ChHhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhccC
Q 019339 270 EQKKLVHENYGKV--DPACVAKVKELYKTLDLEGAFVEYEKESYEKLTKSIEAHPTKEVQAVLKSFLAKIYKRQK 342 (342)
Q Consensus 270 ~~~~~l~~~~~~~--~~~~~~~i~~li~~~g~~~~~~~~~~~~~~~a~~~l~~lp~~~~~~~L~~l~~~~~~R~~ 342 (342)
+++.|.+++++. +++++++++++++++|++++++..++.|.++|++.|+.+|+++.++.|..|++++++|++
T Consensus 279 -~~~~L~~~l~~~~~~~~~~~~~~~ll~~~gal~~a~~~a~~~~~~A~~~L~~lp~~~~~~~L~~La~~~~~R~~ 352 (360)
T 3lmd_A 279 -VGAELRDILTGPLEDDETVNHVLELLSQSGGRQAALDEVYRYMDIANAELDRLPDSTVKEALRNLATFTVKRVG 352 (360)
T ss_dssp -HHHHHHHHCSSCCCSHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHTTSCCSHHHHHHHHHHHHHHHTTS
T ss_pred -hHHHHHHHHcCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcc
Confidence 678889998765 577899999999999999999999999999999999999999999999999999999964
No 15
>3pko_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; HET: CIT; 1.98A {Lactobacillus brevis} PDB: 3n3d_A
Probab=100.00 E-value=1.1e-65 Score=487.98 Aligned_cols=318 Identities=19% Similarity=0.162 Sum_probs=270.8
Q ss_pred HHHHHHHHHHHHHhC-CCCC-CCCcchHHHHHHHhhccc-CCCccchHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHH
Q 019339 7 RFIEVYGVLKQELLN-DPAF-EFDHDSRQWVDRMLDYNV-PGGKLNRGLSVVDSYRLLKEGKELTDDEFFLSSALGWCIE 83 (342)
Q Consensus 7 ~f~~~~~~l~~~l~~-~~~~-~~~~~~~~~l~~~~~~~~-~~GK~~Rp~l~~~~~~~~~~g~~~~~~~~~~a~~lA~a~E 83 (342)
.+|+.|+.|++++.. +..+ +.....++.+.+++.|.+ .||||+||++|+++++ + || ..+++ .+..+|+++|
T Consensus 13 ~~~~~~~~i~~~l~~v~~~l~~~~~~~~~~l~~~~~~~~~~gGKrlRp~l~l~~~~-~-g~-~~~~~---~~~~~A~aiE 86 (334)
T 3pko_A 13 QLWRQFPQVEPQLTALQDYLLRTVQLDNQPIHHKILALLKSGGKLLRPGYFYLFST-F-GN-AATPA---QLQAGAAAIE 86 (334)
T ss_dssp GGGGGCTTTHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHCCCCHHHHHHHHHHT-T-CS-CCCHH---HHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHhCCCCcHHHHHHHHHHH-H-cC-CCCHH---HHHHHHHHHH
Confidence 356777777777776 3211 122233467899999988 8999999999999999 6 34 12333 4678999999
Q ss_pred HHHHHHHHhhhhcCCCCCCcCcccccccccchhhHhhhHHHHHHHHHHHHHcccCCCchHHHHHHHHHHHHHHHhHHHHH
Q 019339 84 WLQAYFLVLDDIMDGSHTRRGQPCWFRVPKVGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMI 163 (342)
Q Consensus 84 llH~asLihDDI~D~~~~RRg~p~~~~~~g~~~ia~~d~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~~ 163 (342)
+||+||||||||||+|++|||+||+|++||++ ++|+.|+++++.++.++++...+ .++++.+++.+..++.||..
T Consensus 87 liH~asLiHDDi~D~s~~RRG~pt~h~~~G~~-~AIl~GD~L~~~a~~~l~~~~~~----~~~~~~~~~~~~~~~~Gq~~ 161 (334)
T 3pko_A 87 ILHVGTLIHDDVIDDSPTRRGVRTIQMTYGQR-NAIYAGDFMFTVYFDQVLKSTTD----RSLIQNHIDAMHRILQGELH 161 (334)
T ss_dssp HHHHHHHHHHHHHHTCSEETTEECHHHHHCHH-HHHHHHHHHHHHHHHHHHHHCCC----HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCccCCCCCCcCCCccHHHHcCch-HHHHHHHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999987 56777777778889999876321 46788899999999999999
Q ss_pred hccccccCcccCCCCCHHHHHHHHHcchhhhhhHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCccc
Q 019339 164 DLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEV 243 (342)
Q Consensus 164 d~~~~~~~~~~~~~~~~~~y~~~~~~KTg~l~~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DDlld~~~~~~~ 243 (342)
|+.+..+ ..+++++|++|+.+|||+| |++||++|++++|++++..+.+++||.++|+||||+||++|++++++.
T Consensus 162 dl~~~~~-----~~~~~~~yl~~i~~KTa~L-~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~ld~~~~~~~ 235 (334)
T 3pko_A 162 QMDLNYR-----EDITLDAYLNEIAGKTAEL-FALSCYQGAQLAGAPQSVIDRTRDIGIAIGCAYQMLDDILDYAGDPKR 235 (334)
T ss_dssp HHHTTTC-----TTCCHHHHHHHHHHTTHHH-HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCTTS
T ss_pred HHHhccC-----CCCCHHHHHHHHHcchHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhh
Confidence 9987643 2579999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred cCC-cccchhhccchHHHHHHHhhccHHHHHHHHHHhCCCChHhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHhhcCC
Q 019339 244 IGK-VGTDIEDYKCSWLVVKALELCNEEQKKLVHENYGKVDPACVAKVKELYKTLDLEGAFVEYEKESYEKLTKSIEAHP 322 (342)
Q Consensus 244 ~GK-~~~Dl~~gk~Tlp~l~al~~~~~~~~~~l~~~~~~~~~~~~~~i~~li~~~g~~~~~~~~~~~~~~~a~~~l~~lp 322 (342)
+|| .|+|+++||+|||++++++.++++.++.+.. -...+++++++++++++++|++++++++++.+.++|++.|+.+|
T Consensus 236 ~GK~~g~Dl~egK~Tlp~i~al~~~~~~l~~~l~~-~~~~~~~~~~~i~~li~~~ga~~~a~~~~~~~~~~A~~~L~~lp 314 (334)
T 3pko_A 236 TQKPVLEDLRSGVYSLPLLLSLSHAPRDFHKLLKK-KQAMTLEDIKHVQALVAQYDGVGAAKQLAQDYTDRALTLIQQLP 314 (334)
T ss_dssp CCHHHHHHHHTTCCCHHHHHHGGGSHHHHHHHHTT-GGGCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred cCCCCCCccccCchhHHHHHHHHhCcHHHHHHHhc-CCCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999 8999999999999999999876444433311 01236788999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHhhccC
Q 019339 323 TKEVQAVLKSFLAKIYKRQK 342 (342)
Q Consensus 323 ~~~~~~~L~~l~~~~~~R~~ 342 (342)
.++.++.|..+++++++|++
T Consensus 315 ~~~~~~~L~~l~~~~~~R~~ 334 (334)
T 3pko_A 315 VGSAQQSLEQLTRLLLRRDH 334 (334)
T ss_dssp SSHHHHHHHHHHHHHTTCC-
T ss_pred CcHHHHHHHHHHHHHHhccC
Confidence 99999999999999999975
No 16
>1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate synthase, structural genom riken structural genomics/proteomics initiative; 1.55A {Thermus thermophilus}
Probab=100.00 E-value=2.5e-64 Score=478.90 Aligned_cols=295 Identities=25% Similarity=0.260 Sum_probs=262.3
Q ss_pred HHHHHHhhccc-CCCccchHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCcCccccccc
Q 019339 33 QWVDRMLDYNV-PGGKLNRGLSVVDSYRLLKEGKELTDDEFFLSSALGWCIEWLQAYFLVLDDIMDGSHTRRGQPCWFRV 111 (342)
Q Consensus 33 ~~l~~~~~~~~-~~GK~~Rp~l~~~~~~~~~~g~~~~~~~~~~a~~lA~a~EllH~asLihDDI~D~~~~RRg~p~~~~~ 111 (342)
+.+.+++.|.+ .|||++||.+|+++++++ |+ +++ .++.+|+++|+||+||||||||||+|++|||+||+|.+
T Consensus 25 ~~l~~~~~~~~~~gGKrlRp~l~l~~~~~~-~~---~~~---~~~~~A~avEliH~asLihDDi~D~s~~RRG~pt~h~~ 97 (330)
T 1wmw_A 25 PLYRDLLQDYPRRGGKMLRGLLTVYSALAH-GA---PLE---AGLEAATALELFQNWVLVHDDIEDGSEERRGRPALHRL 97 (330)
T ss_dssp HHHHHHHHHHHHTCCCCHHHHHHHHHHHHT-TC---CHH---HHHHHHHHHHHHHHHHHHHHHHHHTCCEETTEECHHHH
T ss_pred HHHHHHHHHHHhCCCccHHHHHHHHHHHHc-CC---CHH---HHHHHHHHHHHHHHHHHHHcccccCCCCCCCCCccccc
Confidence 56888999987 999999999999999999 34 232 35789999999999999999999999999999999999
Q ss_pred ccchhhHhhhHHHHHHHHHHHHHcccCCCchHHHHHHHHHHHHHHHhHHHHHhccc-cccCcccCCCCCHHHHHHHHHcc
Q 019339 112 PKVGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLIT-TIEGEKDLSKYSLPLHRRIVQYK 190 (342)
Q Consensus 112 ~g~~~ia~~d~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~~d~~~-~~~~~~~~~~~~~~~y~~~~~~K 190 (342)
||++ ++|+.|+++++.++.++.+.........++++.+++++..++.||.+|+.+ ..+. ..+++++|++|+.+|
T Consensus 98 ~G~~-~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~~dl~~~~~~~----~~~~~~~y~~~i~~K 172 (330)
T 1wmw_A 98 HPMP-LALNAGDAMHAEMWGLLAEGLARGLFPPEVLLEFHEVVRRTAYGQHLDLLWTLGGT----FDLRPEDYFRMVAHK 172 (330)
T ss_dssp SCHH-HHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHSSS----CCCCHHHHHHHHHHH
T ss_pred cCch-HHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHhcccCC----CCCCHHHHHHHHHcc
Confidence 9987 567777777788899988752211112578999999999999999999998 5431 147999999999999
Q ss_pred hhhhhhHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCccccCC-cccchhhccchHHHHHHHhhccH
Q 019339 191 TAYYSFYLPVACALLMAGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGK-VGTDIEDYKCSWLVVKALELCNE 269 (342)
Q Consensus 191 Tg~l~~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DDlld~~~~~~~~GK-~~~Dl~~gk~Tlp~l~al~~~~~ 269 (342)
||+|||++||++|++++|++++.. +++||.++|+||||+||++|++++++ +|| .|+|+++||+|||++++++.+++
T Consensus 173 Ta~Ls~~~~~~~ga~lag~~~~~~--l~~~g~~lG~aFQi~DD~ld~~~d~~-~GK~~g~Dl~egK~T~p~i~al~~~~~ 249 (330)
T 1wmw_A 173 AAYYTAVAPLRLGALLAGKTPPAA--YEEGGLRLGTAFQIVDDVLNLEGGEA-YGKERAGDLYEGKRTLILLRFLEEAPP 249 (330)
T ss_dssp THHHHHHHHHHHHHHHTTCCCCHH--HHHHHHHHHHHHHHHHHHHHHSCSCC-CSSSTTHHHHHTCCCHHHHHHHHHSCH
T ss_pred ccHHHHHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHccCcccCCcc-cCCCcCchhhCCCCCHHHHHHHHhCCH
Confidence 999999999999999999987766 99999999999999999999999999 999 89999999999999999999998
Q ss_pred HHHHHHHHHhCCC--C--hHhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHhh----cCCChHHHHHHHHHHHHHhhcc
Q 019339 270 EQKKLVHENYGKV--D--PACVAKVKELYKTLDLEGAFVEYEKESYEKLTKSIE----AHPTKEVQAVLKSFLAKIYKRQ 341 (342)
Q Consensus 270 ~~~~~l~~~~~~~--~--~~~~~~i~~li~~~g~~~~~~~~~~~~~~~a~~~l~----~lp~~~~~~~L~~l~~~~~~R~ 341 (342)
++++.|.+++++. + ++++++++++++++|+++++++.++.|.++|.+.|+ .+|.++.++.|..+++++++|+
T Consensus 250 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~a~~~~~~~~~~A~~~L~~~i~~lp~~~~~~~L~~l~~~~~~R~ 329 (330)
T 1wmw_A 250 EERARALALLALPREAKPEAEVGWLLERLLASRALAWAKAEAKRLQAEGLALLEAAFQDLPGKEALDHLRGLLAALVERR 329 (330)
T ss_dssp HHHHHHHHHHTSCGGGSCHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTGGGGCSCHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHcCcccCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHhcc
Confidence 8999999999754 2 678899999999999999999999999999999999 9999999999999999999997
Q ss_pred C
Q 019339 342 K 342 (342)
Q Consensus 342 ~ 342 (342)
+
T Consensus 330 ~ 330 (330)
T 1wmw_A 330 A 330 (330)
T ss_dssp -
T ss_pred C
Confidence 5
No 17
>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor}
Probab=100.00 E-value=4e-65 Score=486.68 Aligned_cols=293 Identities=18% Similarity=0.172 Sum_probs=257.1
Q ss_pred HHHHHHhhccc------------CCCccchHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCC
Q 019339 33 QWVDRMLDYNV------------PGGKLNRGLSVVDSYRLLKEGKELTDDEFFLSSALGWCIEWLQAYFLVLDDIMDGSH 100 (342)
Q Consensus 33 ~~l~~~~~~~~------------~~GK~~Rp~l~~~~~~~~~~g~~~~~~~~~~a~~lA~a~EllH~asLihDDI~D~~~ 100 (342)
+.+.++..|.+ .||||+||++|+++++++ |+ +++ .++++|+++|+||+||||||||||+|+
T Consensus 29 ~~l~~~~~y~~~~~~~~~~~~~~~gGKrlRp~l~ll~~~~~-g~---~~~---~~~~~A~avEliH~asLiHDDI~D~s~ 101 (352)
T 3nf2_A 29 PPMDTVAAYHFGWIDAQGNPADGDGGKAVRPALAVLSAEVT-GA---APE---VGVPGAVAVELVHNFSLLHDDLMDGDE 101 (352)
T ss_dssp TTHHHHHHHHTTSBCTTSCBCCCCCCCCHHHHHHHHHHHTT-TC---CGG---GGHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred hHHHHHHHHHhcccccccccCcCCCcccHHHHHHHHHHHHc-CC---CHH---HHHHHHHHHHHHHHHHHHHcCCCCCCC
Confidence 34666666654 799999999999999999 44 232 367899999999999999999999999
Q ss_pred CCcCcccccccccchhhHhhhHHHHHHHHHHHHHcccCCCchHHHHHHHHHHHHHHHhHHHHHhccccccCcccCCCCCH
Q 019339 101 TRRGQPCWFRVPKVGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEGEKDLSKYSL 180 (342)
Q Consensus 101 ~RRg~p~~~~~~g~~~ia~~d~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~~d~~~~~~~~~~~~~~~~ 180 (342)
+|||+||+|++||++ ++|+.|+++++.++.++.+.. .+...++++.+++++..++.||++|+.+..+. ++++
T Consensus 102 ~RRG~pt~h~~~G~~-~AIl~GD~L~~~a~~~l~~~~--~~~~~~~~~~~~~~~~~l~~GQ~~dl~~~~~~-----~~t~ 173 (352)
T 3nf2_A 102 QRRHRDTVWKVHGPA-QAILVGDALFALANEVLLELG--TVEAGRATRRLTKASRSLIDGQAQDISYEHRD-----RVSV 173 (352)
T ss_dssp EETTEECHHHHHCHH-HHHHHHHHHHHHHHHHHHTTC--SHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCS-----CCCH
T ss_pred CCCCCccHHHhcChH-HHHHHHHHHHHHHHHHHHhCC--CchHHHHHHHHHHHHHHHHHHHHHHHHcccCC-----CCCH
Confidence 999999999999987 567777777788899998752 22235789999999999999999999987542 5799
Q ss_pred HHHHHHHHcchhhhhhHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCccccCC-cccchhhccchHH
Q 019339 181 PLHRRIVQYKTAYYSFYLPVACALLMAGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGK-VGTDIEDYKCSWL 259 (342)
Q Consensus 181 ~~y~~~~~~KTg~l~~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DDlld~~~~~~~~GK-~~~Dl~~gk~Tlp 259 (342)
++|++|+.+|||+| |++||++|++++|++++.++.+++||.++|+||||+||++|++++++.+|| .|+||++||+|||
T Consensus 174 ~~y~~~i~~KTa~L-~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~ld~~gd~~~~GK~~g~Dl~egK~Tlp 252 (352)
T 3nf2_A 174 EECLEMEGNKTGAL-LACASSIGAVLGGADERTADTLEKYGYHLGLAFQAVDDLLGIWGDPDATGKQTWSDLRQRKKSLP 252 (352)
T ss_dssp HHHHHHHHHHTHHH-HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHSSCTTHHHHTTCCCHH
T ss_pred HHHHHHHHcccHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhhCCCcCcccccCCccHH
Confidence 99999999999999 999999999999999999999999999999999999999999999999999 8999999999999
Q ss_pred HHHHHhhccHHHHHHHHHHhCC---------CChHhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHhhcCCC-hHHHHH
Q 019339 260 VVKALELCNEEQKKLVHENYGK---------VDPACVAKVKELYKTLDLEGAFVEYEKESYEKLTKSIEAHPT-KEVQAV 329 (342)
Q Consensus 260 ~l~al~~~~~~~~~~l~~~~~~---------~~~~~~~~i~~li~~~g~~~~~~~~~~~~~~~a~~~l~~lp~-~~~~~~ 329 (342)
++++++..+++. ..|.+++++ .+++++++++++++++|++++++.+++.|.++|++.|+.+|+ ++.++.
T Consensus 253 vi~al~~~~~~~-~~L~~~l~~~~~~~~~~~~~~~~~~~~~~li~~~g~~~~a~~~a~~~~~~A~~~L~~lp~~~~~r~~ 331 (352)
T 3nf2_A 253 VVAALAAGGAAS-ERLGEILTADAKASDFANFSEEEFAARAALIEEAGGREWTADEARRQHTIAIEALDAVDMPDRVRDR 331 (352)
T ss_dssp HHHHHHHCSHHH-HHHHHHHHHHHTCTTGGGCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHHH
T ss_pred HHHHHHhCChHH-HHHHHHHhccccccccCCCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 999999987654 456666643 256789999999999999999999999999999999999986 889999
Q ss_pred HHHHHHHHhhccC
Q 019339 330 LKSFLAKIYKRQK 342 (342)
Q Consensus 330 L~~l~~~~~~R~~ 342 (342)
|..|++++++|.+
T Consensus 332 L~~la~~~~~R~~ 344 (352)
T 3nf2_A 332 FTALADFVVVRKR 344 (352)
T ss_dssp HHHHHHHHCC---
T ss_pred HHHHHHHHHhccc
Confidence 9999999999963
No 18
>3aqb_B Component B of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_B*
Probab=100.00 E-value=3.1e-65 Score=484.15 Aligned_cols=290 Identities=18% Similarity=0.181 Sum_probs=263.7
Q ss_pred HHHHHHhhccc-CCCccchHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCcCccccccc
Q 019339 33 QWVDRMLDYNV-PGGKLNRGLSVVDSYRLLKEGKELTDDEFFLSSALGWCIEWLQAYFLVLDDIMDGSHTRRGQPCWFRV 111 (342)
Q Consensus 33 ~~l~~~~~~~~-~~GK~~Rp~l~~~~~~~~~~g~~~~~~~~~~a~~lA~a~EllH~asLihDDI~D~~~~RRg~p~~~~~ 111 (342)
+.+.+++.|.+ .|||++||.+|+++++++ |+ +++ .++++|+++|++|+||||||||||+|++|||+||+|.+
T Consensus 30 ~~l~~~~~~~~~~gGKr~Rp~l~l~~~~~~-g~---~~~---~~~~~A~avEliH~asLiHDDi~D~s~~RRG~pt~h~~ 102 (325)
T 3aqb_B 30 ETINKAAHHILSSGGKRVRPMFVLLSGFLN-DT---QKD---DLIRTAVSLELVHMASLVHDDYIDNSDMRRGNTSVHIA 102 (325)
T ss_dssp HHHHHHHHHHHHSCCCCHHHHHHHHHHTTS-SC---CCH---HHHHHHHHHHHHHHHHHHHHHHHHTCCEETTEECHHHH
T ss_pred hHHHHHHHHHHhCCCCcHHHHHHHHHHHHh-CC---ChH---HHHHHHHHHHHHHHHHHHhCccccCCCCCCCCCCcccc
Confidence 56889999988 999999999999999998 44 222 35789999999999999999999999999999999999
Q ss_pred ccchhhHhhhHHHHHHHHHHHHHcccCCCchHHHHHHHHHHHHHHHhHHHHHhccccccCcccCCCCCHHHHHHHHHcch
Q 019339 112 PKVGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKT 191 (342)
Q Consensus 112 ~g~~~ia~~d~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~~d~~~~~~~~~~~~~~~~~~y~~~~~~KT 191 (342)
||++ ++|+.|+++++.++..+++.. ..++++.+++++..++.||.+|+.+..+. .+++++|++|+.+||
T Consensus 103 ~G~~-~AIl~GD~L~~~a~~~l~~~~-----~~~~~~~~~~~~~~~~~GQ~~dl~~~~~~-----~~~~~~y~~~i~~KT 171 (325)
T 3aqb_B 103 FDKD-TAIRTGHFLLARALQNIATIN-----NSKFHQIFSKTILEVCFGEFDQMADRFNY-----PVSFTAYLRRINRKT 171 (325)
T ss_dssp TCHH-HHHHHHHHHHHHHHHHTTTCC-----CHHHHHHHHHHHHHHHHHHHHHHHTTTCC-----CCCHHHHHHHHHHHT
T ss_pred cChH-HHHHHHHHHHHHHHHHHHhCC-----hHHHHHHHHHHHHHHHHHHHHHHHcccCC-----CCCHHHHHHHHHhhH
Confidence 9987 567777777788898887751 36789999999999999999999986532 479999999999999
Q ss_pred hhhhhHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCccccCC-cccchhhccchHHHHHHHhhccHH
Q 019339 192 AYYSFYLPVACALLMAGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGK-VGTDIEDYKCSWLVVKALELCNEE 270 (342)
Q Consensus 192 g~l~~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DDlld~~~~~~~~GK-~~~Dl~~gk~Tlp~l~al~~~~~~ 270 (342)
|+| |++||++|++++|++++..+.+++||.++|+||||+||++|++++++.+|| .|+|+++||+|||++++++.++++
T Consensus 172 a~L-~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~g~Dl~~gk~T~p~i~al~~~~~~ 250 (325)
T 3aqb_B 172 AIL-IEASCHLGALSSQLDEQSTYHIKQFGHCIGMSYQIIDDILDYTSDEATLGKPVGSDIRNGHITYPLMAAIANLKEQ 250 (325)
T ss_dssp HHH-HHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHSSCTTHHHHTTCCCHHHHHHHHHHHHT
T ss_pred HHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhcCCccchHhhCCCccHHHHHHHHhCCHH
Confidence 999 999999999999999999999999999999999999999999999999999 899999999999999999998776
Q ss_pred HHHHHH---HHhCCC-ChHhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhccC
Q 019339 271 QKKLVH---ENYGKV-DPACVAKVKELYKTLDLEGAFVEYEKESYEKLTKSIEAHPTKEVQAVLKSFLAKIYKRQK 342 (342)
Q Consensus 271 ~~~~l~---~~~~~~-~~~~~~~i~~li~~~g~~~~~~~~~~~~~~~a~~~l~~lp~~~~~~~L~~l~~~~~~R~~ 342 (342)
+++.|. +++++. +++++++++++++++ ++++++..++.+.++|.+.|+.+|+++.++.|..+++++++|++
T Consensus 251 ~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~A~~~L~~lp~~~~~~~L~~l~~~~~~R~~ 325 (325)
T 3aqb_B 251 DDDKLEAVVKHLTSTSDDEVYQYIVSQVKQY-GIEPAELLSRKYGDKAKYHLSQLQDSNIKDYLEEIHEKMLKRVY 325 (325)
T ss_dssp TCCHHHHHHHTCCTTCCHHHHHHHHHHHHHH-THHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhCcC
Confidence 777888 888664 367889999999999 99999999999999999999999999999999999999999975
No 19
>3tc1_A Octaprenyl pyrophosphate synthase; all alpha-helices fold, transferase; 2.00A {Helicobacter pylori}
Probab=100.00 E-value=7.9e-63 Score=464.23 Aligned_cols=278 Identities=15% Similarity=0.127 Sum_probs=233.3
Q ss_pred hccc-CCCccchHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCcCcccccccccchhhH
Q 019339 40 DYNV-PGGKLNRGLSVVDSYRLLKEGKELTDDEFFLSSALGWCIEWLQAYFLVLDDIMDGSHTRRGQPCWFRVPKVGMIA 118 (342)
Q Consensus 40 ~~~~-~~GK~~Rp~l~~~~~~~~~~g~~~~~~~~~~a~~lA~a~EllH~asLihDDI~D~~~~RRg~p~~~~~~g~~~ia 118 (342)
.|.+ .||||+||++|+++++.. + ..-....+.++|+++|+||+||||||||||+|++|||+||+|++||++ ++
T Consensus 28 ~y~~~~gGKrlRp~l~l~~~~~~--~---~~~~~~~~~~~A~aiEliH~asLiHDDi~D~s~~RRG~pt~h~~~G~~-~A 101 (315)
T 3tc1_A 28 LFSKIGPSKMLRSKLMLALLNEK--T---DAILLDKALNLCTIVEMIQTASLLHDDVIDKATMRRKLPSINALFGNF-NA 101 (315)
T ss_dssp HHTTCCCCCCHHHHHHHTTCCTT--C---CHHHHHHHHHHHHHHHHHHHHHHHHHHTC----------------CCS-HH
T ss_pred HHHhcCCcccHHHHHHHHHhccC--c---cccchhhHHHHHHHHHHHHHHHHHHcCCCCCCCCcCCCccHHHHhCch-HH
Confidence 3555 999999999999988732 2 111124577899999999999999999999999999999999999987 56
Q ss_pred hhhHHHHHHHHHHHHHcccCCCchHHHHHHHHHHHHHHHhHHHHHhccccccCcccCCCCCHHHHHHHHHcchhhhhhHH
Q 019339 119 ANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYL 198 (342)
Q Consensus 119 ~~d~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~~d~~~~~~~~~~~~~~~~~~y~~~~~~KTg~l~~~~ 198 (342)
|+.|+++++.++..+++.. .++++.+++++..++.||.+|+.+..+. .+++++|++|+.+|||+| |++
T Consensus 102 Il~GD~L~~~a~~~l~~~~------~~~~~~~~~~~~~~~~GQ~~dl~~~~~~-----~~~~~~y~~~i~~KTa~L-~~~ 169 (315)
T 3tc1_A 102 VMLGDVFYSKAFFELSKMG------ELIAQALSNAVLRLSRGEIEDVFVGECF-----NSDKQKYWRILEDKTAHF-IEA 169 (315)
T ss_dssp HHHHHHHHHHHHHHHTTSC------HHHHHHHHHHHHHHHHHHHHHHHHTTSC-----CCCHHHHHHHHHHHTHHH-HHH
T ss_pred HHHHHHHHHHHHHHHHHCc------HHHHHHHHHHHHHHHHHHHHHHHcCCCC-----CCCHHHHHHHHhcchHHH-HHH
Confidence 6666666788888887651 5788999999999999999999986531 579999999999999999 999
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCccccCC-cccchhhccchHHHHHHHhhccHHHHHHHHH
Q 019339 199 PVACALLMAGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGK-VGTDIEDYKCSWLVVKALELCNEEQKKLVHE 277 (342)
Q Consensus 199 ~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DDlld~~~~~~~~GK-~~~Dl~~gk~Tlp~l~al~~~~~~~~~~l~~ 277 (342)
||++|++++|++ .+.+++||.++|+||||+||++|++++++.+|| .|+|+++||+|||++++++.+++++++.|.+
T Consensus 170 ~~~~ga~lag~~---~~~l~~~g~~lG~aFQI~DD~ld~~~d~~~~GK~~g~Dl~egK~T~p~i~al~~~~~~~~~~L~~ 246 (315)
T 3tc1_A 170 SLKSMAILLNKD---AKIYADFGLNFGMAFQIIDDLLDITQDAKTLGKPNFSDFKEGKTTLPYLLLYEKLNQHDQGLLIS 246 (315)
T ss_dssp HHHHHHHHTTSC---HHHHHHHHHHHHHHHHHHHHHHTTSCCTTCCCCCCCCTGGGTCCCHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHHcCCC---HHHHHHHHHHHHHHHHHHHHHhcccCCHHHhCCChhhHHHcCChhHHHHHHHHhCCHHHHHHHHH
Confidence 999999999998 688999999999999999999999999999999 8999999999999999999999989999999
Q ss_pred HhCCCChHhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHh
Q 019339 278 NYGKVDPACVAKVKELYKTLDLEGAFVEYEKESYEKLTKSIEAHPTKEVQAVLKSFLAKIY 338 (342)
Q Consensus 278 ~~~~~~~~~~~~i~~li~~~g~~~~~~~~~~~~~~~a~~~l~~lp~~~~~~~L~~l~~~~~ 338 (342)
++++.+++++++++++++++|++++++.+++.|.++|++.|+.+|+++.|+.|..+++++.
T Consensus 247 ~l~~~~~~~~~~i~~li~~~ga~~~~~~~~~~~~~~A~~~L~~lp~s~~r~~L~~l~~~~~ 307 (315)
T 3tc1_A 247 YFKQDSHEIIEWTKEKFKQYGIIEETLKTAQVYSKKALEAIKGENNLILEKLAQDVISRTF 307 (315)
T ss_dssp TTTCCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHHHHCC--
T ss_pred HHcCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 9988788889999999999999999999999999999999999999999999999998765
No 20
>3apz_A Geranyl diphosphate synthase; prenyltransferase, all alpha-helices fold, chroloplast, TRAN isoprenoid biosynthetic process; 2.60A {Arabidopsis thaliana} PDB: 3aq0_A*
Probab=100.00 E-value=1.9e-63 Score=476.27 Aligned_cols=294 Identities=19% Similarity=0.214 Sum_probs=230.6
Q ss_pred HHHHHHhhccc-CC--CccchHHHHHHHHHHhhCCCCC-----------ChHHHHHHHHHHHHHHHHHHHHHHhhhhcCC
Q 019339 33 QWVDRMLDYNV-PG--GKLNRGLSVVDSYRLLKEGKEL-----------TDDEFFLSSALGWCIEWLQAYFLVLDDIMDG 98 (342)
Q Consensus 33 ~~l~~~~~~~~-~~--GK~~Rp~l~~~~~~~~~~g~~~-----------~~~~~~~a~~lA~a~EllH~asLihDDI~D~ 98 (342)
+.+.+++.|.+ .| |||+||++|+++++++ ++... +.+....++.+|+++|+||+||||||||||+
T Consensus 34 ~~l~~~~~y~~~~g~~GKrlRp~l~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~A~avEliH~asLiHDDi~D~ 112 (348)
T 3apz_A 34 PKLASAAEYFFKRGVQGKQFRSTILLLMATAL-DVRVPEALIGESTDIVTSELRVRQRGIAEITEMIHVASLLHDDVLDD 112 (348)
T ss_dssp C------------CCHHHHHHHHHHHHHHTTS-CC--------------CHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred hhHHHHHHHHHhCCCCCccHHHHHHHHHHHHc-CCCCccccccccccccccchhHHHHHHHHHHHHHHHHHHHhccccCC
Confidence 45888999988 66 9999999999999998 33210 1111234678999999999999999999999
Q ss_pred CCCCcCcccccccccchhhHhhhHHHHHHHHHHHHHcccCCCchHHHHHHHHHHHHHHHhHHHHHhccccccCcccCCCC
Q 019339 99 SHTRRGQPCWFRVPKVGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEGEKDLSKY 178 (342)
Q Consensus 99 ~~~RRg~p~~~~~~g~~~ia~~d~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~~d~~~~~~~~~~~~~~ 178 (342)
|++|||+||+|.+||++ ++|+.|+++++.++..+.+.. ..++++.+++++..++.||.+|+.+.... .+
T Consensus 113 s~~RRG~pt~h~~~G~~-~AIl~GD~L~~~a~~~l~~~~-----~~~~~~~~~~~~~~~~~GQ~~dl~~~~~~-----~~ 181 (348)
T 3apz_A 113 ADTRRGVGSLNVVMGNK-MSVLAGDFLLSRACGALAALK-----NTEVVALLATAVEHLVTGETMEITSSTEQ-----RY 181 (348)
T ss_dssp -------------CCHH-HHHHHHHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHHHHHHHHHHTCCHHH-----HT
T ss_pred CCCCCCCCcHHHHhCch-HHHHHHHHHHHHHHHHHHhCC-----CHHHHHHHHHHHHHHHHHHHHHHHhccCC-----CC
Confidence 99999999999999987 566666666778888887641 36788999999999999999999886431 46
Q ss_pred CHHHHHHHHHcchhhhhhHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCccccCC-cccchhhccch
Q 019339 179 SLPLHRRIVQYKTAYYSFYLPVACALLMAGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGK-VGTDIEDYKCS 257 (342)
Q Consensus 179 ~~~~y~~~~~~KTg~l~~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DDlld~~~~~~~~GK-~~~Dl~~gk~T 257 (342)
++++|++|+.+|||+| |+++|++|++++|++++..+.+++||.++|+||||+||++|++++++.+|| .|+|+++||+|
T Consensus 182 ~~~~y~~~i~~KTa~L-~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~lD~~gd~~~~GK~~g~Dl~egK~T 260 (348)
T 3apz_A 182 SMDYYMQKTYYKTASL-ISNSCKAVAVLTGQTAEVAVLAFEYGRNLGLAFQLIDDILDFTGTSASLGKGSLSDIRHGVIT 260 (348)
T ss_dssp CHHHHHHHHHHHHTHH-HHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCSCCHHHHTTCCC
T ss_pred CHHHHHHHHHcchHHH-HHHHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhhcCCcchhhHhCCChh
Confidence 9999999999999999 999999999999999999999999999999999999999999999999999 89999999999
Q ss_pred HHHHHHHhhccHHHHHHHHHHhCCCChHhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHhhcCCChH------HHHHHH
Q 019339 258 WLVVKALELCNEEQKKLVHENYGKVDPACVAKVKELYKTLDLEGAFVEYEKESYEKLTKSIEAHPTKE------VQAVLK 331 (342)
Q Consensus 258 lp~l~al~~~~~~~~~~l~~~~~~~~~~~~~~i~~li~~~g~~~~~~~~~~~~~~~a~~~l~~lp~~~------~~~~L~ 331 (342)
||++++++.. ++.++.+.+.++ +++++++++++++++|++++++++++.|.++|++.|+.+|.++ .++.|.
T Consensus 261 lp~l~al~~~-~~~~~~l~~~~~--~~~~~~~~~~~i~~~g~l~~a~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~L~ 337 (348)
T 3apz_A 261 APILFAMEEF-PQLREVVDQVEK--DPRNVDIALEYLGKSKGIQRARELAMEHANLAAAAIGSLPETDNEDVKRSRRALI 337 (348)
T ss_dssp HHHHHHHHHC-TTHHHHHHTTTT--CTHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTSCCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHcC-HHHHHHHHhccC--CHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHcCCCCcccccHHHHHHHH
Confidence 9999999984 445555554433 4678899999999999999999999999999999999999764 799999
Q ss_pred HHHHHHhhccC
Q 019339 332 SFLAKIYKRQK 342 (342)
Q Consensus 332 ~l~~~~~~R~~ 342 (342)
.|++++++|++
T Consensus 338 ~l~~~~~~R~~ 348 (348)
T 3apz_A 338 DLTHRVITRNK 348 (348)
T ss_dssp HHHHHHHHCCC
T ss_pred HHHHHHHhCcC
Confidence 99999999975
No 21
>2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase, farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A {Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A* 2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A* 2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A* 2z52_A* 2z78_A* 2z7h_A* ...
Probab=100.00 E-value=9.2e-63 Score=469.49 Aligned_cols=304 Identities=17% Similarity=0.173 Sum_probs=231.6
Q ss_pred CCCCCcchHHHHHHHhhccc-CCCccchHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCC
Q 019339 24 AFEFDHDSRQWVDRMLDYNV-PGGKLNRGLSVVDSYRLLKEGKELTDDEFFLSSALGWCIEWLQAYFLVLDDIMDGSHTR 102 (342)
Q Consensus 24 ~~~~~~~~~~~l~~~~~~~~-~~GK~~Rp~l~~~~~~~~~~g~~~~~~~~~~a~~lA~a~EllH~asLihDDI~D~~~~R 102 (342)
...+....++.+.+++.|.+ .||||+||++|+++++++ |+ +++ .+..+|+++|+||+||||||||||+|++|
T Consensus 17 ~~~~~~~~~~~l~~~~~y~~~~gGKrlRp~l~l~~~~~~-~~---~~~---~~~~~A~avEliH~asLiHDDI~D~s~~R 89 (340)
T 2e8v_A 17 DPVWSSQNESLISKPYNHILLKPGKNFRLNLIVQINRVM-NL---PKD---QLAIVSQIVELLHNSSLLIDDIEDNAPLR 89 (340)
T ss_dssp CCCCCHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHH-CC---CHH---HHHHHHHHHHHHHHHHHHHHHHHTTCSEE
T ss_pred cccccccChHHHHHHHHHHHhCCCccHHHHHHHHHHHHh-CC---CHH---HHHHHHHHHHHHHHHHHHhCccccCCCCC
Confidence 33455566788999999988 999999999999999999 33 333 35789999999999999999999999999
Q ss_pred cCcccccccccchhhHhhhHHHHHHHHHHHHHcccCCCchHHHHHHHHHHHHHHHhHHHHHhccccccCcccCCCCCHHH
Q 019339 103 RGQPCWFRVPKVGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEGEKDLSKYSLPL 182 (342)
Q Consensus 103 Rg~p~~~~~~g~~~ia~~d~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~~d~~~~~~~~~~~~~~~~~~ 182 (342)
||+||+|.+||++ ++|+.|+++++.++..+.+...+.+...++++.+++++..++.||++|+.|..+.. ...+++++
T Consensus 90 RG~pt~h~~~G~~-~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~ldl~~~~~~~--~~~~t~~~ 166 (340)
T 2e8v_A 90 RGQTTSHLIFGVP-STINTANYMYFRAMQLVSQLTTKEPLYHNLITIFNEELINLHRGQGLDIYWRDFLP--EIIPTQEM 166 (340)
T ss_dssp TTEECHHHHTCHH-HHHHHHHHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTT--SCCCCHHH
T ss_pred CCCcchhhccCch-HHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccc--cCCCCHHH
Confidence 9999999999987 56677777778889999876433334456889999999999999999999865320 02469999
Q ss_pred HHHHHHcchhhhhhHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCccccCC-cccchhhccchHHHH
Q 019339 183 HRRIVQYKTAYYSFYLPVACALLMAGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGK-VGTDIEDYKCSWLVV 261 (342)
Q Consensus 183 y~~~~~~KTg~l~~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DDlld~~~~~~~~GK-~~~Dl~~gk~Tlp~l 261 (342)
|++|+.+|||+| |+++|++|++++|+++ ..+.+++||.++|+||||+||++|++++++.+|| +|+|+++||+|||++
T Consensus 167 y~~~i~~KTa~L-~~~~~~~ga~lag~~~-~~~~l~~~g~~lG~aFQi~DD~ld~~~~~~~~GK~~g~Dl~egK~Tlp~i 244 (340)
T 2e8v_A 167 YLNMVMNKTGGL-FRLTLRLMEALSPSSH-HGHSLVPFINLLGIIYQIRDDYLNLKDFQMSSEKGFAEDITEGKLSFPIV 244 (340)
T ss_dssp HHHHHHHHTHHH-HHHHHHHHHHHCCC-------CHHHHHHHHHHHHHHHHHHHHHC-----CCCTTHHHHTTCCCHHHH
T ss_pred HHHHHHhhhHHH-HHHHHHHHHHHcCCcH-HHHHHHHHHHHHHHHHHHHHHHHhccCChhhhCCCchhhHhcCCchHHHH
Confidence 999999999999 9999999999999987 5789999999999999999999999999999999 899999999999999
Q ss_pred HHHhhccHH----HHHHHHHHhCCC--ChHhHHHHHHHHH-HcChHHHHHHHHHHHHHHHHHH-----hhcCCChH----
Q 019339 262 KALELCNEE----QKKLVHENYGKV--DPACVAKVKELYK-TLDLEGAFVEYEKESYEKLTKS-----IEAHPTKE---- 325 (342)
Q Consensus 262 ~al~~~~~~----~~~~l~~~~~~~--~~~~~~~i~~li~-~~g~~~~~~~~~~~~~~~a~~~-----l~~lp~~~---- 325 (342)
++++.++++ +++.+.+++.+. +++..+++.++++ ++|++++++.+++.|.++|++. |+.+|+++
T Consensus 245 ~al~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~~~ga~~~~~~~~~~~~~~A~~~~~~~~L~~lp~~~~~~~ 324 (340)
T 2e8v_A 245 HALNFTKTKGQTEQHNEILRILLLRTSDKDIKLKLIQILEFDTNSLAYTKNFINQLVNMIKNDNENKYLPDLASHSDTAT 324 (340)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTC-----------------
T ss_pred HHHHhCcccccchhHHHHHHHHhCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhccCcccHhhCCCCccccH
Confidence 999987552 455677776543 3333458999999 9999999999999999999999 99999888
Q ss_pred -HHHHHHHHHHHHhh
Q 019339 326 -VQAVLKSFLAKIYK 339 (342)
Q Consensus 326 -~~~~L~~l~~~~~~ 339 (342)
.++.|..+++++.+
T Consensus 325 ~~~~~L~~l~~~l~~ 339 (340)
T 2e8v_A 325 NLHDELLYIIDHLSE 339 (340)
T ss_dssp ---------------
T ss_pred HHHHHHHHHHHHHHh
Confidence 99999999998865
No 22
>2q58_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structur genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A*
Probab=100.00 E-value=3e-62 Score=470.29 Aligned_cols=318 Identities=28% Similarity=0.419 Sum_probs=265.6
Q ss_pred hHHHHHHHHHHHHHHHhC-CC--CC--CCCcchHHHHHHHhhcccCCCccchHHHHHHHHHHhhCCC-CCChHHHHHHHH
Q 019339 4 LKSRFIEVYGVLKQELLN-DP--AF--EFDHDSRQWVDRMLDYNVPGGKLNRGLSVVDSYRLLKEGK-ELTDDEFFLSSA 77 (342)
Q Consensus 4 ~~~~f~~~~~~l~~~l~~-~~--~~--~~~~~~~~~l~~~~~~~~~~GK~~Rp~l~~~~~~~~~~g~-~~~~~~~~~a~~ 77 (342)
+..+|.++|+.++..+.+ .. .+ ++......|+.++++|.+.||||+||++|+++++++ +|. ..++ ..++.
T Consensus 24 ~~~df~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~Y~~~GGKrlRp~l~~~~~~~~-~~~~~~~~---e~~~~ 99 (368)
T 2q58_A 24 DYTDFINYYDKFKVIVYNVLKKLPLNDEIRKPVIEYYLNCIDYNVKKGKHIRGKILVLISSLS-SAYSNIKR---DSIYL 99 (368)
T ss_dssp CCTTGGGTHHHHHHHHHTTCCCCCSSCSTTCCHHHHHHHHHHHHTTCSTTTTTC-CHHHHTTT-TCCCSSSH---HHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHhcCCCCccchhHHHHHHHHHHh-CCCccCCH---HHHHH
Confidence 346788888888877766 21 22 245667789999999999999999999999999999 342 2223 34678
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCCCCcCcccccccccchhhHhhhHHHHHHHHHHHHHcccC--CCchHHHHHHHHHHHHH
Q 019339 78 LGWCIEWLQAYFLVLDDIMDGSHTRRGQPCWFRVPKVGMIAANDGVLLRNHISRILKNHFR--DKPYYVDLLDLFNEVEF 155 (342)
Q Consensus 78 lA~a~EllH~asLihDDI~D~~~~RRg~p~~~~~~g~~~ia~~d~~~l~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~ 155 (342)
+||+||+||+||||||||||+|++|||+||||++||++ +||++|+++++.++.++.+... +.+...++++.+++++.
T Consensus 100 la~aiEliH~asLiHDDimD~s~~RRG~pt~h~~~G~~-~AIl~Gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 178 (368)
T 2q58_A 100 LGWVVEAIQALILIADDIMDSGKFRRGAPCWYIVHGQS-NAINDIFFLKMLSLSLIFELSSVFGNDIVMKIQKIYNESIF 178 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCEETTEECHHHHTHHH-HHHHHHHHHHHHHHHHHTTTHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcccCCCCCCCCCccccCcchh-hHHHHHHHHHHHHHHHHHHhccccChHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999987 5778888888888888865422 22234688899999999
Q ss_pred HHhHHHHHhccccccCcccCCCCCHHHHHHHHHcchhhhhhHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHHHHHHhh
Q 019339 156 QTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAG--ENLDKHVEVKDILVQMGIYFQVQDD 233 (342)
Q Consensus 156 ~~~~GQ~~d~~~~~~~~~~~~~~~~~~y~~~~~~KTg~l~~~~~~~~ga~lag--~~~~~~~~l~~~g~~lG~afQi~DD 233 (342)
.++.||.+|+.+...+.. +.++++|++|+.+|||.|+|.+|+.+|++++| ++++..+.+++||.++|+||||+||
T Consensus 179 ~~~~GQ~lDl~~~~~~~~---~~~~e~y~~ii~~KTa~l~~~~~~~~g~~~ag~~~~~~~~~~l~~~g~~lG~aFQI~DD 255 (368)
T 2q58_A 179 FTVLGQHLDLSYFDLSKA---DKISERYFSMVEMKTSRYTFYMPVFFGLTLSEIQVSSAQLNLIEAILYKLGEFYQVHND 255 (368)
T ss_dssp HHHHHHHHHHCSCCCSSC---SSHHHHHHHHHHHHTHHHHTHHHHHHHHHHSCCCCCCSSTTTHHHHHHHHHHHHHHHHH
T ss_pred HhhhhHHHHHHhhhcccC---CchHHHHHHHHHHHhccccchHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999988654332 45789999999999999989999999999998 4667788999999999999999999
Q ss_pred hhhhcCCccccCC-cccchhhccchHHHHHHHhhccHHHHHHHHHHhCCCChHhHHHHHHHHHHcChHHHHHHHHHHHHH
Q 019339 234 FLDCFGSPEVIGK-VGTDIEDYKCSWLVVKALELCNEEQKKLVHENYGKVDPACVAKVKELYKTLDLEGAFVEYEKESYE 312 (342)
Q Consensus 234 lld~~~~~~~~GK-~~~Dl~~gk~Tlp~l~al~~~~~~~~~~l~~~~~~~~~~~~~~i~~li~~~g~~~~~~~~~~~~~~ 312 (342)
++|+++ || .|+|+++||+|||++++++.+++++++.|.+.++++. ..+++++...+..+.+.++++.+.+
T Consensus 256 iLD~~~-----gK~~g~Dl~egK~T~p~i~al~~~~~~~r~~L~~~~~~~~----~~vk~l~~~l~~~~~~~ey~~~~~~ 326 (368)
T 2q58_A 256 VSDYLF-----NDSNADDICRFKLTWPLQKSFEIADEEMKLKISENYGKNS----SLVKDCYNLLKINEHYLEYQRNALD 326 (368)
T ss_dssp HHHHHS-----CCCSSCTTTSCCCCHHHHSSTTTCCHHHHHHHHHHTTTCH----HHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred Hhhccc-----CCCCCchHhcCCcHHHHHHHHHhCCHHHHHHHHHHhCCCH----HHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 999985 78 8999999999999999999999999999999987642 4577888888888888889999999
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHHh
Q 019339 313 KLTKSIEAHPTKEVQAVLKSFLAKIY 338 (342)
Q Consensus 313 ~a~~~l~~lp~~~~~~~L~~l~~~~~ 338 (342)
++.+.|+.+|++..++.|..++..+.
T Consensus 327 ~~~~~i~~l~~~~~k~~l~~ll~kI~ 352 (368)
T 2q58_A 327 YLIKLVKDITDDSLQKVFIHLIHQIS 352 (368)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHH
Confidence 99999999998877776665555444
No 23
>2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway, isopentenyl transferase, structural GENO structural genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens} SCOP: a.128.1.1
Probab=100.00 E-value=3.2e-61 Score=451.46 Aligned_cols=287 Identities=19% Similarity=0.143 Sum_probs=239.0
Q ss_pred cchHHHHHHHhhccc-CCCccchHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCcCccc
Q 019339 29 HDSRQWVDRMLDYNV-PGGKLNRGLSVVDSYRLLKEGKELTDDEFFLSSALGWCIEWLQAYFLVLDDIMDGSHTRRGQPC 107 (342)
Q Consensus 29 ~~~~~~l~~~~~~~~-~~GK~~Rp~l~~~~~~~~~~g~~~~~~~~~~a~~lA~a~EllH~asLihDDI~D~~~~RRg~p~ 107 (342)
...++.+.+++.|.+ .|||++||.+|+++++++ |+ +++ .+.++|+++|+||+||||||||||+|++|||+||
T Consensus 7 ~~~~~~l~~~~~y~~~~gGKr~Rp~l~l~~~~~~-~~---~~~---~~~~~A~avEliH~asLiHDDi~D~s~~RRG~pt 79 (301)
T 2q80_A 7 ETVQRILLEPYKYLLQLPGKQVRTKLSQAFNHWL-KV---PED---KLQIIIEVTEMLHNASLLIDDIEDNSKLRRGFPV 79 (301)
T ss_dssp CCHHHHHTHHHHHHTTSSCHHHHHHHHHHHHHHH-CC---CHH---HHHHHHHHHHHHHHHHHHHHHHHHTCSEETTEEC
T ss_pred CCCcHHHHHHHHHHHhCCCccHHHHHHHHHHHHh-CC---CHH---HHHHHHHHHHHHHHHHHHHccccCCCCCCCCCcc
Confidence 445677999999998 999999999999999998 33 333 3578999999999999999999999999999999
Q ss_pred ccccccchhhHhhhHHHHHHHHHHHHHcccCCCchHHHHHHHHHHHHHHHhHHHHHhccccccCcccCCCCCHHHHHHHH
Q 019339 108 WFRVPKVGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEGEKDLSKYSLPLHRRIV 187 (342)
Q Consensus 108 ~~~~~g~~~ia~~d~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~~d~~~~~~~~~~~~~~~~~~y~~~~ 187 (342)
+|.+||++ ++|+.|+++++.++..+.+.. . .++++.+++.+..++.||.+|+.+..+. ..+++++|++|+
T Consensus 80 ~h~~~G~~-~AIl~GD~l~~~a~~~l~~~~--~---~~~~~~~~~~~~~~~~GQ~~dl~~~~~~----~~~~~~~y~~~i 149 (301)
T 2q80_A 80 AHSIYGIP-SVINSANYVYFLGLEKVLTLD--H---PDAVKLFTRQLLELHQGQGLDIYWRDNY----TCPTEEEYKAMV 149 (301)
T ss_dssp HHHHHCHH-HHHHHHHHHHHHHHHHHHTTC--C---TTHHHHHHHHHHHHHHHHHHHHHHHHTT----CCCCHHHHHHHH
T ss_pred hhhccCcH-HHHHHHHHHHHHHHHHHHHCC--C---HHHHHHHHHHHHHHHHHHHHHHHhccCC----CCCCHHHHHHHH
Confidence 99999987 566666667788888888752 1 2466778889999999999999985432 157999999999
Q ss_pred HcchhhhhhHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCccccCC-cccchhhccchHHHHHHHhh
Q 019339 188 QYKTAYYSFYLPVACALLMAGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGK-VGTDIEDYKCSWLVVKALEL 266 (342)
Q Consensus 188 ~~KTg~l~~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DDlld~~~~~~~~GK-~~~Dl~~gk~Tlp~l~al~~ 266 (342)
.+|||+| |+++|++|++++|.++ .+++||.++|+||||+||++|++++++.+|| .|+|+++||+|||++++++.
T Consensus 150 ~~KTa~L-~~~~~~~ga~~a~~~~----~l~~~g~~lG~aFQi~DD~ld~~~~~~~~GK~~g~Dl~egK~T~p~i~al~~ 224 (301)
T 2q80_A 150 LQKTGGL-FGLAVGLMQLFSDYKE----DLKPLLNTLGLFFQIRDDYANLHSKEYSENKSFCEDLTEGKFSFPTIHAIWS 224 (301)
T ss_dssp HHHHHHH-HHHHHHHHHHTCCCCS----CCHHHHHHHHHHHHHHHHHHHHHCC------CTTHHHHHTCCCHHHHHHHHH
T ss_pred HcccHHH-HHHHHHHHHHHCCChH----HHHHHHHHHHHHHHHHHHHhhhcCChhhhCCCccchhhcCCcHHHHHHHHHc
Confidence 9999999 9999999999999874 4899999999999999999999999999999 89999999999999999997
Q ss_pred ccHHHHHHHHHHhCCC-ChHhH-HHHHHHHHHcChHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhccC
Q 019339 267 CNEEQKKLVHENYGKV-DPACV-AKVKELYKTLDLEGAFVEYEKESYEKLTKSIEAHPTKEVQAVLKSFLAKIYKRQK 342 (342)
Q Consensus 267 ~~~~~~~~l~~~~~~~-~~~~~-~~i~~li~~~g~~~~~~~~~~~~~~~a~~~l~~lp~~~~~~~L~~l~~~~~~R~~ 342 (342)
+++.+ .+.+++.+. .+.+. ++++++++++|+++++++.++.|.++|++.|+.+|.++. |+.+++++.+|.|
T Consensus 225 -~~~~~-~l~~~l~~~~~~~~~~~~~~~~l~~~g~~~~a~~~~~~~~~~A~~~L~~l~~~~~---L~~l~~~l~~~~~ 297 (301)
T 2q80_A 225 -RPEST-QVQNILRQRTENIDIKKYCVHYLEDVGSFEYTRNTLKELEAKAYKQIDARGGNPE---LVALVKHLSKMFK 297 (301)
T ss_dssp -STTCC-HHHHHHHHTCCCHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCCHH---HHHHHHHHHTTCC
T ss_pred -Cccch-HHHHHHhcCCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHcCCCCHH---HHHHHHHHHHHhc
Confidence 44333 344555333 23344 459999999999999999999999999999999998764 9999999988864
No 24
>1v4e_A Octoprenyl-diphosphate synthase; trans-type prenyltransferase, thermophilic; 2.28A {Thermotoga maritima} SCOP: a.128.1.1 PDB: 1v4j_A 1wkz_A 1vg2_A 1wl3_A 1wl0_A 1wl2_A 1v4h_A 1v4i_A 1v4k_A 2azl_A 1wl1_A 1vg4_A 1vg3_A 1vg6_A 1vg7_A
Probab=100.00 E-value=1.4e-59 Score=439.77 Aligned_cols=257 Identities=19% Similarity=0.144 Sum_probs=226.5
Q ss_pred HHhhccc-CCCccchHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCcCcccccccccch
Q 019339 37 RMLDYNV-PGGKLNRGLSVVDSYRLLKEGKELTDDEFFLSSALGWCIEWLQAYFLVLDDIMDGSHTRRGQPCWFRVPKVG 115 (342)
Q Consensus 37 ~~~~~~~-~~GK~~Rp~l~~~~~~~~~~g~~~~~~~~~~a~~lA~a~EllH~asLihDDI~D~~~~RRg~p~~~~~~g~~ 115 (342)
+++.|.+ .|||++||++|+++++++ |+. +++ .++++|+++|++|+||||||||||+|++|||+||+|.+||++
T Consensus 30 ~~~~y~~~~gGKrlRp~l~l~~~~~~-g~~--~~~---~~~~~A~avEliH~asLiHDDi~D~s~~RRG~pt~h~~~G~~ 103 (299)
T 1v4e_A 30 EQIMKDLPLYGKMLRVRLSILSFKNR-GVE--IGE---DAISSLAALELVHLASLLHDDVIDGARFRRGKETINFMYGDK 103 (299)
T ss_dssp HHHHTTSCCCCCCHHHHHHHHHHHHH-TCC--CCH---HHHHHHHHHHHHHHHHHHHHHHHHTCSEETTEECHHHHHCHH
T ss_pred HHHHHHHhCCCCcHHHHHHHHHHHHc-CCC--Chh---HHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCCchhhhcCHH
Confidence 6788887 999999999999999999 331 122 357899999999999999999999999999999999999998
Q ss_pred hhHhhhHHHHHHHHHHHHHcccCCCchHHHHHHHHHHHHHHHhHHHHHhccccccCcccCCCCCHHHHHHHHHcchhhhh
Q 019339 116 MIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYS 195 (342)
Q Consensus 116 ~ia~~d~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~~d~~~~~~~~~~~~~~~~~~y~~~~~~KTg~l~ 195 (342)
++++.|+++++.++.++++.. ..++++.+++++..++.||.+|+.+..+ .+++++|++|+.+|||+|
T Consensus 104 -~AIl~GD~L~~~a~~~l~~~~-----~~~~~~~~~~~~~~~~~GQ~~dl~~~~~------~~~~~~y~~~i~~KTa~L- 170 (299)
T 1v4e_A 104 -AAVAAGDLVLVSAFHTVEEIG-----NNKLRRAFLNVIGKMSEAELIEQLSRYK------PITKEEYLRIVEGKSGAL- 170 (299)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHHHHTTS------CCCHHHHHHHHHHHTHHH-
T ss_pred -HHHHHHHHHHHHHHHHHHhCC-----hHHHHHHHHHHHHHHhhhHHHHHHccCC------CCCHHHHHHHHHhccHHH-
Confidence 455555555577888888752 3678999999999999999999998653 269999999999999999
Q ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCccccCC-cccchhhccchHHHHHHHhhccHHHHHH
Q 019339 196 FYLPVACALLMAGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGK-VGTDIEDYKCSWLVVKALELCNEEQKKL 274 (342)
Q Consensus 196 ~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DDlld~~~~~~~~GK-~~~Dl~~gk~Tlp~l~al~~~~~~~~~~ 274 (342)
|++||++|++++|+++ +.+++||.++|+||||+||++|++++ +.+|| .|+|+++||+|||++++++.+++
T Consensus 171 ~~~~~~~ga~lag~~~---~~l~~~g~~lG~aFQi~DD~lD~~~d-~~~GK~~g~Dl~egK~T~p~l~al~~~~~----- 241 (299)
T 1v4e_A 171 FGLALQLPALLEGELG---EDLYNLGVTIGTIYQMFDDIMDFAGM-EKIGKDGFLDLKNGVASFPLVTAMEKFPE----- 241 (299)
T ss_dssp HHHHHHHHHHHHTCCC---HHHHHHHHHHHHHHHHHHHHHHHTTC-CSCCTTSSCCCTTTTCCHHHHHHHHHCHH-----
T ss_pred HHHHHHHHHHHcCCCH---HHHHHHHHHHHHHHHHHHHHHHccCc-cccCCCcchHhhCCCchHHHHHHHHhChH-----
Confidence 9999999999999976 88999999999999999999999999 99999 89999999999999999999765
Q ss_pred HHHHhCCCChHhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHhhcCCCh
Q 019339 275 VHENYGKVDPACVAKVKELYKTLDLEGAFVEYEKESYEKLTKSIEAHPTK 324 (342)
Q Consensus 275 l~~~~~~~~~~~~~~i~~li~~~g~~~~~~~~~~~~~~~a~~~l~~lp~~ 324 (342)
+.+++.+ +++++++++++++|++++++..++.|.++|.+.|+.+|+.
T Consensus 242 l~~~l~~---~~~~~~~~~l~~~g~~~~~~~~~~~~~~~A~~~L~~l~~~ 288 (299)
T 1v4e_A 242 ARQMFEN---RDWSGLMSFMREKGILKECEETLKVLVKNVIIENSWLRDF 288 (299)
T ss_dssp HHHHHHT---TCHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCGGGCCC
T ss_pred HHHHHhH---HHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 3344433 4678899999999999999999999999999999999875
No 25
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus}
Probab=100.00 E-value=8.7e-60 Score=443.79 Aligned_cols=258 Identities=22% Similarity=0.282 Sum_probs=213.0
Q ss_pred HHHHHHHhhccc-CCCccchHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhh--cCCCCCCcCcccc
Q 019339 32 RQWVDRMLDYNV-PGGKLNRGLSVVDSYRLLKEGKELTDDEFFLSSALGWCIEWLQAYFLVLDDI--MDGSHTRRGQPCW 108 (342)
Q Consensus 32 ~~~l~~~~~~~~-~~GK~~Rp~l~~~~~~~~~~g~~~~~~~~~~a~~lA~a~EllH~asLihDDI--~D~~~~RRg~p~~ 108 (342)
++.+.+++.|.+ .||||+||++|+++++++ |+ +++ .+.++|+++|+||+|||||||| ||+|++|||+||+
T Consensus 35 ~~~l~~a~~y~~~~gGKrlRP~L~l~~~~~~-g~---~~~---~~~~~A~avEliH~aSLIHDDip~mD~~~~RRG~pt~ 107 (324)
T 3ts7_A 35 PERLHQAMRYSVLGGGKRMRPLLTYATGQTI-GV---AAD---LLDGPACAVEFIHVYSLIHDDLPAMDDDDLRRGKPTC 107 (324)
T ss_dssp SHHHHHHHHHHHHSCCCCHHHHHHHHHHHHH-TC---CGG---GTHHHHHHHHHHHHHHHHHHTSTTTTCCSEETTEECH
T ss_pred cHHHHHHHHHHHhCCCCcHHHHHHHHHHHHh-CC---CHH---HHHHHHHHHHHHHHHHHhhcCcccccCCCccCCCCch
Confidence 467899999998 999999999999999999 44 232 3678999999999999999999 9999999999999
Q ss_pred cccccchhhHhhhHHHHHHHHHHHHHcccC-C--CchHHHHHHHHHHHH--HHHhHHHHHhccccccCcccCCCCCHHHH
Q 019339 109 FRVPKVGMIAANDGVLLRNHISRILKNHFR-D--KPYYVDLLDLFNEVE--FQTASGQMIDLITTIEGEKDLSKYSLPLH 183 (342)
Q Consensus 109 ~~~~g~~~ia~~d~~~l~~~~~~~l~~~~~-~--~~~~~~~~~~~~~~~--~~~~~GQ~~d~~~~~~~~~~~~~~~~~~y 183 (342)
|++||++ ++|+.|+++++.++.++++... . +....++++.+++++ ..|+.||.+|+.+... .+++++|
T Consensus 108 h~~~G~~-~AIlaGD~L~~~Af~~l~~~~~~~~~~~~~~~~i~~la~a~g~~~m~~GQ~lDl~~~~~------~~t~~~y 180 (324)
T 3ts7_A 108 HKAYDEA-TAILAGDGLQALAFHVLAQDPSIAVPAENRIAMIETLAKASGPAGMVGGQAIDLASVGK------KLDLPGL 180 (324)
T ss_dssp HHHSCHH-HHHHHHHHHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTTTC------CCCHHHH
T ss_pred hhhcChH-HHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHhhhHHHHhHHHHHHccCC------CCCHHHH
Confidence 9999987 4555566666888999987631 1 122457888888875 6899999999998653 5799999
Q ss_pred HHHHHcchhhhhhHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCccccCC-cccchhhccchHHHH
Q 019339 184 RRIVQYKTAYYSFYLPVACALLMAG-ENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGK-VGTDIEDYKCSWLVV 261 (342)
Q Consensus 184 ~~~~~~KTg~l~~~~~~~~ga~lag-~~~~~~~~l~~~g~~lG~afQi~DDlld~~~~~~~~GK-~~~Dl~~gk~Tlp~l 261 (342)
++|+.+|||+| |+++|++|++++| ++++..+.+++||.++|+||||+||++|++++++++|| .|+|+++||+|||++
T Consensus 181 ~~i~~~KTg~L-~~~a~~~Ga~lag~a~~~~~~~l~~~g~~lGlAFQI~DDiLD~~~d~~~~GK~~g~Dl~egK~T~p~l 259 (324)
T 3ts7_A 181 ENMHIRKTGAL-IRASVRLACLARPGLPAEQFDRLDHYAKCIGLAFQIQDDILDEESDTQTLGKTRGKDRDHNKPNYPAL 259 (324)
T ss_dssp HHHHHHHTHHH-HHHHHHHHHTTSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC---------------CCCHHHH
T ss_pred HHHHHhhHHHH-HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHH
Confidence 99999999999 9999999999999 89999999999999999999999999999999999999 899999999999999
Q ss_pred HHHhhccHHHHHHHHHHhCCCChHhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcc
Q 019339 262 KALELCNEEQKKLVHENYGKVDPACVAKVKELYKTLDLEGAFVEYEKESYEKLTKSIEAHPTKEVQAVLKSFLAKIYKRQ 341 (342)
Q Consensus 262 ~al~~~~~~~~~~l~~~~~~~~~~~~~~i~~li~~~g~~~~~~~~~~~~~~~a~~~l~~lp~~~~~~~L~~l~~~~~~R~ 341 (342)
++ ++.++..++++.++|.+.|+.+|++ ++.|..+++++++|+
T Consensus 260 ~g------------------------------------le~a~~~a~~~~~~A~~~L~~l~~~--~~~L~~la~~~~~R~ 301 (324)
T 3ts7_A 260 LG------------------------------------LSGAKEKAEEMHEAALESLAGFGPE--ADLLRELARFIIQRQ 301 (324)
T ss_dssp HC------------------------------------HHHHHHHHHHHHHHHHHTTTTCCGG--GHHHHHHHHHHHHTS
T ss_pred HH------------------------------------HHHHHHHHHHHHHHHHHHHHhCCcc--HHHHHHHHHHHHhcc
Confidence 95 3456678888999999999999975 789999999999997
Q ss_pred C
Q 019339 342 K 342 (342)
Q Consensus 342 ~ 342 (342)
+
T Consensus 302 ~ 302 (324)
T 3ts7_A 302 S 302 (324)
T ss_dssp S
T ss_pred C
Confidence 4
No 26
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}
Probab=100.00 E-value=2e-59 Score=440.08 Aligned_cols=277 Identities=22% Similarity=0.244 Sum_probs=206.6
Q ss_pred HHHHHHHHHHhCCCCCCCCcchHHHHHHHhhccc-CCCccchHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHHHHHHH
Q 019339 10 EVYGVLKQELLNDPAFEFDHDSRQWVDRMLDYNV-PGGKLNRGLSVVDSYRLLKEGKELTDDEFFLSSALGWCIEWLQAY 88 (342)
Q Consensus 10 ~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~GK~~Rp~l~~~~~~~~~~g~~~~~~~~~~a~~lA~a~EllH~a 88 (342)
+....+.+.|... ++.... ++.+.+++.|.+ .||||+||++|+++++++ |+ +++ .+.++|+++|+||+|
T Consensus 11 ~~~~~ve~~L~~~--l~~~~~-~~~l~~a~~y~~~~gGKrlRp~Lvl~~~~~~-g~---~~~---~~~~~A~avEliH~a 80 (317)
T 4f62_A 11 YTQSRVDQYLEQQ--LSDYAP-ANQLHNAMRYSLFNGGKRIRPMLTYASAQLV-GD---ISS---LTDASAAALESIHAY 80 (317)
T ss_dssp HHHHHHHHHHHHH--SCCCGG-GHHHHHHHHHHHC-CCCCHHHHHHHHHHHHH-SC---CCH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--hcccCC-cHHHHHHHHHHHhCCCcchHHHHHHHHHHHh-CC---CHH---HHHHHHHHHHHHHHH
Confidence 3445555555541 111111 577999999998 999999999999999999 44 232 367899999999999
Q ss_pred HHHhhhh--cCCCCCCcCcccccccccchhhHhhhHHHHHHHHHHHHHcccC-CCchHHHHHHHHHHHH--HHHhHHHHH
Q 019339 89 FLVLDDI--MDGSHTRRGQPCWFRVPKVGMIAANDGVLLRNHISRILKNHFR-DKPYYVDLLDLFNEVE--FQTASGQMI 163 (342)
Q Consensus 89 sLihDDI--~D~~~~RRg~p~~~~~~g~~~ia~~d~~~l~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~--~~~~~GQ~~ 163 (342)
||||||| ||+|++|||+||+|++||++ ++|+.|+++++.++.++++... +.....++++.+++++ ..|+.||.+
T Consensus 81 SLIHDDip~mD~s~~RRG~pt~h~~~G~~-~AIlaGD~Ll~~Af~~l~~~~~~~~~~~~~~i~~la~a~g~~~m~~GQ~l 159 (317)
T 4f62_A 81 SLIHDDLPAMDNDELRRGKPTCHIQFDEA-TAILAGDALQTFAFELLSNPTSAQPELAIKLIQELVVASGRNGMITGQMI 159 (317)
T ss_dssp HHHHHHSTTSCC-------CCHHHHSCHH-HHHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHSTTTHHHHHHH
T ss_pred HHHHCCcccccCCCCcCCCccHHhhcCHH-HHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhhhHHHhHHH
Confidence 9999999 99999999999999999987 3444444455788889987521 1113456778887776 479999999
Q ss_pred hccccccCcccCCCCCHHHHHHHHHcchhhhhhHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcc
Q 019339 164 DLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAG-ENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPE 242 (342)
Q Consensus 164 d~~~~~~~~~~~~~~~~~~y~~~~~~KTg~l~~~~~~~~ga~lag-~~~~~~~~l~~~g~~lG~afQi~DDlld~~~~~~ 242 (342)
|+.+... .+++++|++|+.+|||+| |+++|++|++++| ++++..+.+++||.++|+||||+||++|++++++
T Consensus 160 Dl~~~~~------~~t~~~y~~i~~~KTg~L-~~~a~~~Ga~lag~a~~~~~~~l~~~g~~lGlAFQI~DDiLD~~gd~~ 232 (317)
T 4f62_A 160 DLSSENK------NISLAELEQMHVHKTGAL-IKASVRMGALSTGQVKPEQLAKLDAYAHAIGLAFQVQDDIIDLTSDTE 232 (317)
T ss_dssp HHHTSSS------CCCHHHHHHHHHHHTHHH-HHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHhccCC------CCCHHHHHHHHHhchHHH-HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChH
Confidence 9998642 479999999999999999 9999999999999 8999999999999999999999999999999999
Q ss_pred ccCC-cccchhhccchHHHHHHHhhccHHHHHHHHHHhCCCChHhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHhhcC
Q 019339 243 VIGK-VGTDIEDYKCSWLVVKALELCNEEQKKLVHENYGKVDPACVAKVKELYKTLDLEGAFVEYEKESYEKLTKSIEAH 321 (342)
Q Consensus 243 ~~GK-~~~Dl~~gk~Tlp~l~al~~~~~~~~~~l~~~~~~~~~~~~~~i~~li~~~g~~~~~~~~~~~~~~~a~~~l~~l 321 (342)
++|| .|+|+++||+|||+++++ +.++..++++.++|.+.|+.+
T Consensus 233 ~~GK~~g~Dl~egK~T~p~l~gl------------------------------------e~a~~~a~~~~~~A~~~L~~l 276 (317)
T 4f62_A 233 TLGKTQFSDAEANKATYPKLLGL------------------------------------DGAKALVVRLHEQAIAQISEF 276 (317)
T ss_dssp ------------CCCCHHHHHHH------------------------------------HHHHHHHHHHHHHHHHHHGGG
T ss_pred hhCCCcchHHhcCCCcHHHHHHH------------------------------------HHHHHHHHHHHHHHHHHHHhC
Confidence 9999 899999999999999954 456678888999999999999
Q ss_pred CChHHHHHHHHHHHHHhhccC
Q 019339 322 PTKEVQAVLKSFLAKIYKRQK 342 (342)
Q Consensus 322 p~~~~~~~L~~l~~~~~~R~~ 342 (342)
|+ .++.|..+++++++|++
T Consensus 277 ~~--~~~~L~~l~~~~~~R~~ 295 (317)
T 4f62_A 277 GD--KSQPLTDLANYIIDRNH 295 (317)
T ss_dssp GG--GGHHHHHHHHHHHC---
T ss_pred ch--hHHHHHHHHHHHHHhcc
Confidence 96 47899999999999974
No 27
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1
Probab=100.00 E-value=3.5e-59 Score=437.40 Aligned_cols=280 Identities=19% Similarity=0.268 Sum_probs=224.3
Q ss_pred HHHHHHHHHHHHhCCCCCCCCcchHHHHHHHhhccc-CCCccchHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHHHHH
Q 019339 8 FIEVYGVLKQELLNDPAFEFDHDSRQWVDRMLDYNV-PGGKLNRGLSVVDSYRLLKEGKELTDDEFFLSSALGWCIEWLQ 86 (342)
Q Consensus 8 f~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~GK~~Rp~l~~~~~~~~~~g~~~~~~~~~~a~~lA~a~EllH 86 (342)
|.++...+.+.|.+...- .. .++.+.+++.|.+ .||||+||++|+++++++ |+ +++ .++++|+++|+||
T Consensus 6 ~~~~~~~v~~~l~~~l~~-~~--~~~~l~~~~~y~~~~gGKrlRp~L~l~~~~~~-g~---~~~---~~~~~A~avEliH 75 (301)
T 1rtr_A 6 MNKLIDEVNNELSVAINK-SV--MDTQLEESMLYSLNAGGKRIRPVLLLLTLDSL-NT---EYE---LGMKSAIALEMIH 75 (301)
T ss_dssp HHHHHHHHHHHHHTSSCC-CS--SCCSHHHHHHHHHTSCCCCHHHHHHHHHHHHT-TS---CGG---GGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhc-cC--CcHHHHHHHHHHHhCCCCcHHHHHHHHHHHHh-CC---CHH---HHHHHHHHHHHHH
Confidence 444556677777752111 00 1245888999988 999999999999999999 44 232 3568999999999
Q ss_pred HHHHHhhhh--cCCCCCCcCcccccccccch-hhHhhhHHHHHHHHHHHHHcc-cCCCchHHHHHHHHHHHH--HHHhHH
Q 019339 87 AYFLVLDDI--MDGSHTRRGQPCWFRVPKVG-MIAANDGVLLRNHISRILKNH-FRDKPYYVDLLDLFNEVE--FQTASG 160 (342)
Q Consensus 87 ~asLihDDI--~D~~~~RRg~p~~~~~~g~~-~ia~~d~~~l~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~--~~~~~G 160 (342)
+|||||||| ||+|++|||+||+|++||++ ++++||++ ++.++.++++. ..+++...++++.+++++ ..++.|
T Consensus 76 ~asLiHDDiP~~D~s~~RRG~pt~h~~~G~~~AIlaGD~L--l~~A~~~l~~~~~~~~~~~~~~~~~ls~~~g~~~~~~G 153 (301)
T 1rtr_A 76 TYSLIHDDLPAMDNDDYRRGKLTNHKVYGEWTAILAGDAL--LTKAFELISSDDRLTDEVKIKVLQRLSIASGHVGMVGG 153 (301)
T ss_dssp HHHHHHHHSTTTTCCSEETTEECHHHHHCHHHHHHHHHHH--HHHHHHHHHTCTTSCHHHHHHHHHHHHHHHSTTTHHHH
T ss_pred HHHHHhCCchhccCCCccCCCccHHhhcCHHHHHHHHHHH--HHHHHHHHHHhccCCchHHHHHHHHHHHHHhHhHHHHH
Confidence 999999999 99999999999999999987 55555554 46788899875 222234567888898888 889999
Q ss_pred HHHhccccccCcccCCCCCHHHHHHHHHcchhhhhhHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhcCC
Q 019339 161 QMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGS 240 (342)
Q Consensus 161 Q~~d~~~~~~~~~~~~~~~~~~y~~~~~~KTg~l~~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DDlld~~~~ 240 (342)
|.+|+.+..+ .+++++|++|+.+|||+| |++||++|++++|++++..+.+++||.++|+||||+||++|++++
T Consensus 154 Q~~Dl~~~~~------~~~~~~y~~i~~~KTa~L-~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DDilD~~~d 226 (301)
T 1rtr_A 154 QMLDMQSEGQ------PIDLETLEMIHKTKTGAL-LTFAVMSAADIANVDDTTKEHLESYSYHLGMMFQIKDDLLDCYGD 226 (301)
T ss_dssp HHHHHHTTTS------CCCHHHHHHHHHHHTHHH-HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCC------CCCHHHHHHHHHhchHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999998643 479999999999999999 999999999999999999999999999999999999999999999
Q ss_pred ccccCC-cccchhhccchHHHHHHHhhccHHHHHHHHHHhCCCChHhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHhh
Q 019339 241 PEVIGK-VGTDIEDYKCSWLVVKALELCNEEQKKLVHENYGKVDPACVAKVKELYKTLDLEGAFVEYEKESYEKLTKSIE 319 (342)
Q Consensus 241 ~~~~GK-~~~Dl~~gk~Tlp~l~al~~~~~~~~~~l~~~~~~~~~~~~~~i~~li~~~g~~~~~~~~~~~~~~~a~~~l~ 319 (342)
++.+|| .|+|+++||+|||++++++ .+++.++++.++|.+.|+
T Consensus 227 ~~~~GK~~g~Dl~~gK~T~p~l~al~------------------------------------~a~~~a~~~~~~A~~~L~ 270 (301)
T 1rtr_A 227 EAKLGKKVGSDLENNKSTYVSLLGKD------------------------------------GAEDKLTYHRDAAVDELT 270 (301)
T ss_dssp HCC-------------CCHHHHHHHH------------------------------------HHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCcchHHHcCCCcHHHHHHHH------------------------------------HHHHHHHHHHHHHHHHHH
Confidence 999999 8999999999999999854 346688889999999999
Q ss_pred cCCChHHHHHHHHHHHHHhhccC
Q 019339 320 AHPTKEVQAVLKSFLAKIYKRQK 342 (342)
Q Consensus 320 ~lp~~~~~~~L~~l~~~~~~R~~ 342 (342)
.+|+++.++.|..+++++++|++
T Consensus 271 ~l~~~~~~~~L~~l~~~i~~R~~ 293 (301)
T 1rtr_A 271 QIDEQFNTKHLLEIVDLFYSRDH 293 (301)
T ss_dssp TSCTTSCCHHHHHHHHHHHCC--
T ss_pred hCCCchHHHHHHHHHHHHHHhhc
Confidence 99987788999999999999974
No 28
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=100.00 E-value=5.7e-59 Score=435.65 Aligned_cols=279 Identities=22% Similarity=0.253 Sum_probs=219.6
Q ss_pred HHHHHHHHHHHhCCCCCCCCcchHHHHHHHhhccc-CCCccchHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHHHHHH
Q 019339 9 IEVYGVLKQELLNDPAFEFDHDSRQWVDRMLDYNV-PGGKLNRGLSVVDSYRLLKEGKELTDDEFFLSSALGWCIEWLQA 87 (342)
Q Consensus 9 ~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~GK~~Rp~l~~~~~~~~~~g~~~~~~~~~~a~~lA~a~EllH~ 87 (342)
......+.+.|... ++.....++.+.+++.|.+ .||||+||++|+++++++ |+ +++ .+.++|+++|+||+
T Consensus 8 ~~~~~~ve~~l~~~--~~~~~~~~~~l~~~~~y~~~~gGKrlRp~L~l~~~~~~-g~---~~~---~~~~~A~aiEliH~ 78 (304)
T 3lsn_A 8 ASSQARVDAAMHTL--FTAPSPELARLYEAMRYSVMNGGKRVRPLLAYAACEAL-GG---KPE---QANGAACAVELIHA 78 (304)
T ss_dssp HHHHHHHHHHHHGG--GCCSSGGGHHHHHHHHHHHTTTCCCHHHHHHHHHHHHT-TC---CGG---GGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--hhhccCCcHHHHHHHHHHHhCCCCchHHHHHHHHHHHh-CC---CHH---HHHHHHHHHHHHHH
Confidence 33444555555541 1111122477999999988 999999999999999999 44 232 36789999999999
Q ss_pred HHHHhhhh--cCCCCCCcCcccccccccchhhHhhhHHHHHHHHHHHHHcccC---CCchHHHHHHHHHHHHH--HHhHH
Q 019339 88 YFLVLDDI--MDGSHTRRGQPCWFRVPKVGMIAANDGVLLRNHISRILKNHFR---DKPYYVDLLDLFNEVEF--QTASG 160 (342)
Q Consensus 88 asLihDDI--~D~~~~RRg~p~~~~~~g~~~ia~~d~~~l~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~--~~~~G 160 (342)
|||||||| ||+|++|||+||+|++||++ ++|+.|+++++.++..+++... ++....++++.+++++. .|+.|
T Consensus 79 asLIHDDip~mD~s~~RRG~pt~h~~~G~~-~AIlaGD~Ll~~a~~~l~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~G 157 (304)
T 3lsn_A 79 YSLVHDDLPAMDDDDLRRGQPTTHKAFDEA-CAILAGDGLQSLAFSALLDPALSDASAEIRLRMVTTLAQAAGPAGMVGG 157 (304)
T ss_dssp HHHHHHTSTTTTCCSEETTEECHHHHSCHH-HHHHHHHHHHHHHHHHHHCTTSCCCCHHHHHHHHHHHHHHHSTTTHHHH
T ss_pred HHHHHCCcccccCCCccCCCCchHhhcCHH-HHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHHchhhHhHh
Confidence 99999999 99999999999999999987 3444444455788899987531 11224578888888773 59999
Q ss_pred HHHhccccccCcccCCCCCHHHHHHHHHcchhhhhhHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHhhhhhhcC
Q 019339 161 QMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAGE-NLDKHVEVKDILVQMGIYFQVQDDFLDCFG 239 (342)
Q Consensus 161 Q~~d~~~~~~~~~~~~~~~~~~y~~~~~~KTg~l~~~~~~~~ga~lag~-~~~~~~~l~~~g~~lG~afQi~DDlld~~~ 239 (342)
|.+|+.+... .+++++|++|+.+|||+| |++||++|++++|+ +++..+.+++||.++|+||||+||++|+++
T Consensus 158 Q~lDl~~~~~------~~s~~~y~~i~~~KTg~L-~~~~~~~ga~lag~~~~~~~~~l~~~g~~lGlaFQI~DDilD~~~ 230 (304)
T 3lsn_A 158 QAIDLGSVGL------KLDQQALEYMHRHKTGAL-IEASVILGALASGRAEKGELKALQTYAQAIGLAFQVQDDILDVES 230 (304)
T ss_dssp HHHHHHTTTC------CCCHHHHHHHHHHHTHHH-HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCC------CCCHHHHHHHHHhhhHHH-HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 9999998753 479999999999999999 99999999999999 888899999999999999999999999999
Q ss_pred CccccCC-cccchhhccchHHHHHHHhhccHHHHHHHHHHhCCCChHhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHh
Q 019339 240 SPEVIGK-VGTDIEDYKCSWLVVKALELCNEEQKKLVHENYGKVDPACVAKVKELYKTLDLEGAFVEYEKESYEKLTKSI 318 (342)
Q Consensus 240 ~~~~~GK-~~~Dl~~gk~Tlp~l~al~~~~~~~~~~l~~~~~~~~~~~~~~i~~li~~~g~~~~~~~~~~~~~~~a~~~l 318 (342)
+++++|| .|+|+++||+|||+++++ +.++..++++.++|.+.|
T Consensus 231 ~~~~~GK~~g~Dl~egK~T~p~l~~l------------------------------------~~a~~~a~~~~~~A~~~L 274 (304)
T 3lsn_A 231 DTATLGKRQGADIARDKPTYPALLGL------------------------------------AAAKEYALELRDQALHAL 274 (304)
T ss_dssp HHHHC------------CCHHHHHCH------------------------------------HHHHHHHHHHHHHHHHHT
T ss_pred ChHHhCCCcccHHhcCCccHHHHHHH------------------------------------HHHHHHHHHHHHHHHHHH
Confidence 9999999 899999999999999954 445667888899999999
Q ss_pred hcCCChHHHHHHHHHHHHHhhccC
Q 019339 319 EAHPTKEVQAVLKSFLAKIYKRQK 342 (342)
Q Consensus 319 ~~lp~~~~~~~L~~l~~~~~~R~~ 342 (342)
+.+|+ .++.|..+++++++|++
T Consensus 275 ~~l~~--~~~~L~~l~~~~~~R~~ 296 (304)
T 3lsn_A 275 RPFDA--AAEPLRELARYIVERRS 296 (304)
T ss_dssp TTSCG--GGHHHHHHHHHHHC---
T ss_pred HhCch--hHHHHHHHHHHHHHhcc
Confidence 99996 48899999999999974
No 29
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Probab=100.00 E-value=1e-59 Score=440.62 Aligned_cols=289 Identities=21% Similarity=0.220 Sum_probs=227.5
Q ss_pred CchhHHHHHHHHHHHHHHHhCC--CCCCCCcchHHHHHHHhhccc-CCCccchHHHHHHHHHHhhCCCCCChHHHHHH--
Q 019339 1 MSDLKSRFIEVYGVLKQELLND--PAFEFDHDSRQWVDRMLDYNV-PGGKLNRGLSVVDSYRLLKEGKELTDDEFFLS-- 75 (342)
Q Consensus 1 ~~~~~~~f~~~~~~l~~~l~~~--~~~~~~~~~~~~l~~~~~~~~-~~GK~~Rp~l~~~~~~~~~~g~~~~~~~~~~a-- 75 (342)
||+.-.+|.+++......++.. ..++.. ..++.+.+++.|.+ .||||+||++|+++++++ |+. ++ .+
T Consensus 1 ~~~~~~~~~~~~~~~~~~ve~~l~~~l~~~-~~~~~l~~~~~y~~~~gGKrlRp~L~l~~~~~~-g~~---~~---~~~~ 72 (309)
T 3pde_A 1 MSLINARLIAFEDQWVPALNAPLKQAILAD-SQDAQLAAAMTYSVLAGGKRLRPLLTVATMQSL-GVT---FV---PERH 72 (309)
T ss_dssp -CCEEHHHHHHHHHHHHHHHTTHHHHHHHT-CSCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHT-TCC---CC---HHHH
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHhccc-CCcHHHHHHHHHHHhCCCCchHHHHHHHHHHHh-CCC---HH---HHhH
Confidence 5555557887777766666652 111111 12467999999998 999999999999999999 442 22 24
Q ss_pred HHHHHHHHHHHHHHHHhhhh--cCCCCCCcCcccccccccchhhHhhhHHHHHHHHHHHHHcccCCCchHHHHHHHHHHH
Q 019339 76 SALGWCIEWLQAYFLVLDDI--MDGSHTRRGQPCWFRVPKVGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEV 153 (342)
Q Consensus 76 ~~lA~a~EllH~asLihDDI--~D~~~~RRg~p~~~~~~g~~~ia~~d~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 153 (342)
.++|+++|+||+|||||||| ||+|++|||+||+|++||++ +||+.|+++++.++..+.+...+.....++++.++++
T Consensus 73 ~~~A~aiEliH~aSLIHDDiP~mD~s~~RRG~pt~h~~~G~~-~AIlaGD~Ll~~Af~~l~~~~~~~~~~~~~~~~l~~a 151 (309)
T 3pde_A 73 WRPVMALELLHTYSLIHDDLPAMDNDALRRGEPTNHVKFGAG-MATLAGDGLLTLAFQWLTATDLPATMQAALVQALATA 151 (309)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTTTCCSEETTEECHHHHHCHH-HHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHCCchhccCCCCCCCCcchhhhcChH-HHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Confidence 68999999999999999999 99999999999999999987 5666666667888999987533333456788888887
Q ss_pred H--HHHhHHHHHhccccccCcccCCCCCHHHHHHHHHcchhhhhhHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Q 019339 154 E--FQTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAGENLDKHVEVKDILVQMGIYFQVQ 231 (342)
Q Consensus 154 ~--~~~~~GQ~~d~~~~~~~~~~~~~~~~~~y~~~~~~KTg~l~~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~ 231 (342)
+ ..++.||.+|+.+... .+++++|++|+.+|||+| |++||++|++++|++++..+.+++||.++|+||||+
T Consensus 152 ~g~~~m~~GQ~lDl~~~~~------~~t~~~y~~i~~~KTg~L-~~~a~~~ga~laga~~~~~~~l~~~g~~lGlaFQI~ 224 (309)
T 3pde_A 152 AGPSGMVAGQAKDIQSEHV------NLPLSQLRVLHKEKTGAL-LHYAVQAGLILGQAPEAQWPAYLQFADAFGLAFQIY 224 (309)
T ss_dssp HSTTTHHHHHHHHHHTTTC------CCCHHHHHHHHHHHTHHH-HHHHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHHHH
T ss_pred hhHhHHHHhHHHHHHccCC------CCCHHHHHHHHHhccHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 6 6899999999998643 479999999999999999 999999999999999999999999999999999999
Q ss_pred hhhhhhcCCccccCC-cccchhhccchHHHHHHHhhccHHHHHHHHHHhCCCChHhHHHHHHHHHHcChHHHHHHHHHHH
Q 019339 232 DDFLDCFGSPEVIGK-VGTDIEDYKCSWLVVKALELCNEEQKKLVHENYGKVDPACVAKVKELYKTLDLEGAFVEYEKES 310 (342)
Q Consensus 232 DDlld~~~~~~~~GK-~~~Dl~~gk~Tlp~l~al~~~~~~~~~~l~~~~~~~~~~~~~~i~~li~~~g~~~~~~~~~~~~ 310 (342)
||++|++++++++|| .|+|+++||+|||++++++++++ .++++
T Consensus 225 DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~al~~a~~------------------------------------~~~~~ 268 (309)
T 3pde_A 225 DDILDVVSSPAEMGKATQKDADEAKNTYPGKLGLIGANQ------------------------------------ALIDT 268 (309)
T ss_dssp HHHHHHHCC-----------CTTTSSSHHHHHCHHHHHH------------------------------------HHHHH
T ss_pred HHHHhccCCHHHhCCCccchhhcCCccHHHHHHHHHhHH------------------------------------HHHHH
Confidence 999999999999999 89999999999999999997543 33445
Q ss_pred HHHHHHHhhcCCCh-HHHHHHHHHHHHHhhccC
Q 019339 311 YEKLTKSIEAHPTK-EVQAVLKSFLAKIYKRQK 342 (342)
Q Consensus 311 ~~~a~~~l~~lp~~-~~~~~L~~l~~~~~~R~~ 342 (342)
.++|.+.|+.+|.+ ..+. |+.+++++++|++
T Consensus 269 ~~~a~~~l~~~~~~~~~~~-L~~l~~~~~~r~~ 300 (309)
T 3pde_A 269 IHSGQAALQGLPTSTQRDD-LAAFFSYFDTERV 300 (309)
T ss_dssp HHHHHHHHHTSCCCHHHHH-HHGGGGGSCTTTT
T ss_pred HHHHHHHHHHhhhccCHHH-HHHHHHHHHHhhc
Confidence 55778888887654 2233 9999999999864
No 30
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens}
Probab=100.00 E-value=1.5e-58 Score=438.01 Aligned_cols=258 Identities=23% Similarity=0.242 Sum_probs=209.3
Q ss_pred HHHHHHHhhccc-CCCccchHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhh--cCCCCCCcCcccc
Q 019339 32 RQWVDRMLDYNV-PGGKLNRGLSVVDSYRLLKEGKELTDDEFFLSSALGWCIEWLQAYFLVLDDI--MDGSHTRRGQPCW 108 (342)
Q Consensus 32 ~~~l~~~~~~~~-~~GK~~Rp~l~~~~~~~~~~g~~~~~~~~~~a~~lA~a~EllH~asLihDDI--~D~~~~RRg~p~~ 108 (342)
++.+.+++.|.+ .||||+||+||+++++++ |+ +++ .++++|+++|+||+|||||||| ||+|++|||+||+
T Consensus 70 ~~~l~~~~~y~~~~gGKrlRP~L~l~~~~~~-g~---~~~---~~~~~A~aiEliH~asLIHDDiPamD~s~~RRG~pt~ 142 (335)
T 2h8o_A 70 PQNLLEAMRHGVLNGGKRLRPFLVIESVALL-GG---DAE---AGLHVGAALECLHCYSLVHDDLPAMDDDDLRRGQPTV 142 (335)
T ss_dssp CHHHHHHHHHHHHTSCSCHHHHHHHHHHHHT-TC---CHH---HHHHHHHHHHHHHHHHHHHHTSTTTTCCSEETTEECH
T ss_pred cHHHHHHHHHHHhCCCCcHHHHHHHHHHHHh-CC---CHH---HHHHHHHHHHHHHHHHHHHCCchhccCCCcCCCCCcH
Confidence 367899999988 999999999999999999 44 232 3578999999999999999999 9999999999999
Q ss_pred cccccchhhHhhhHHHHHHHHHHHHHccc--CCCchHHHHHHHHHHHH--HHHhHHHHHhccccccCcccCCCCCHHHHH
Q 019339 109 FRVPKVGMIAANDGVLLRNHISRILKNHF--RDKPYYVDLLDLFNEVE--FQTASGQMIDLITTIEGEKDLSKYSLPLHR 184 (342)
Q Consensus 109 ~~~~g~~~ia~~d~~~l~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~--~~~~~GQ~~d~~~~~~~~~~~~~~~~~~y~ 184 (342)
|++||++ ++|+.|+++++.++.++.+.. .+++...++++.+++++ ..++.||.+|+.+... .+++++|+
T Consensus 143 h~~~G~~-~AIlaGD~Ll~~A~~~l~~~~~~~~~~~~~~~~~~ls~a~g~~~~~~GQ~lDl~~~~~------~~~~~~y~ 215 (335)
T 2h8o_A 143 HRKFDEA-TAILAGDSLLTLAFDIIASDDNPLAAERKAALVISLARAAGIGGMAGGQALDLAAEKK------APDEDGII 215 (335)
T ss_dssp HHHSCHH-HHHHHHHHHHHHHHHHHHSTTSCSCHHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHS------CCCHHHHH
T ss_pred hhhcChH-HHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHhhhhHHHHHHHHHHHccCC------CCCHHHHH
Confidence 9999987 445445555577889998752 12224567888898888 7899999999998653 46999999
Q ss_pred HHHHcchhhhhhHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCccccCC-cccchhhccchHHHHHH
Q 019339 185 RIVQYKTAYYSFYLPVACALLMAGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGK-VGTDIEDYKCSWLVVKA 263 (342)
Q Consensus 185 ~~~~~KTg~l~~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DDlld~~~~~~~~GK-~~~Dl~~gk~Tlp~l~a 263 (342)
+|+.+|||+| |+++|++|++++|++++..+.+++||.++|+||||+||++|++++++++|| .|+|+++||+|||++++
T Consensus 216 ~i~~~KTa~L-~~~a~~~Ga~laga~~~~~~~l~~~g~~lGlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~~ 294 (335)
T 2h8o_A 216 TLQAMKTGAL-LRFACEAGAIIAGSNQAERQRLRLFGEKIGLSFQLADDLLDLTADAATMGKATGKDAARGKGTLVALRG 294 (335)
T ss_dssp HHHHHHTHHH-HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----------------CCCHHHHHC
T ss_pred HHHHhchHHH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhCCCcchHHhcCCccHHHHHH
Confidence 9999999999 999999999999999999999999999999999999999999999999999 89999999999999996
Q ss_pred HhhccHHHHHHHHHHhCCCChHhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhccC
Q 019339 264 LELCNEEQKKLVHENYGKVDPACVAKVKELYKTLDLEGAFVEYEKESYEKLTKSIEAHPTKEVQAVLKSFLAKIYKRQK 342 (342)
Q Consensus 264 l~~~~~~~~~~l~~~~~~~~~~~~~~i~~li~~~g~~~~~~~~~~~~~~~a~~~l~~lp~~~~~~~L~~l~~~~~~R~~ 342 (342)
+ +++++.+++|.++|++.|+.+|. .++.|..+++++++|++
T Consensus 295 l------------------------------------e~a~~~a~~~~~~A~~~L~~l~~--~~~~L~~l~~~i~~R~~ 335 (335)
T 2h8o_A 295 E------------------------------------AWAREKLQEQVAEASELLAPYGE--KAAILIAAARFIAERKS 335 (335)
T ss_dssp H------------------------------------HHHHHHHHHHHHHHHHHTGGGGG--GGHHHHHHHHHHHC---
T ss_pred H------------------------------------HHHHHHHHHHHHHHHHHHHhCch--hHHHHHHHHHHHHhccC
Confidence 3 45678899999999999999985 57899999999999975
No 31
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=100.00 E-value=1.2e-58 Score=434.73 Aligned_cols=282 Identities=20% Similarity=0.225 Sum_probs=219.0
Q ss_pred HHHHHHHHHHHHhC--CCCCCCCcchHHHHHHHhhccc-CCCccchHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHHH
Q 019339 8 FIEVYGVLKQELLN--DPAFEFDHDSRQWVDRMLDYNV-PGGKLNRGLSVVDSYRLLKEGKELTDDEFFLSSALGWCIEW 84 (342)
Q Consensus 8 f~~~~~~l~~~l~~--~~~~~~~~~~~~~l~~~~~~~~-~~GK~~Rp~l~~~~~~~~~~g~~~~~~~~~~a~~lA~a~El 84 (342)
|.+++......++. ...++.....++.+.+++.|.+ .||||+||++|+++++++ |+ +++ .+.++|+++|+
T Consensus 9 ~~~~l~~~~~~ve~~L~~~l~~~~~~~~~l~~~~~y~~~~gGKrlRp~L~l~~~~~~-g~---~~~---~~~~~A~aiEl 81 (313)
T 3lom_A 9 NKQVIDKYTQRHELYLEQLLNEIIIPAPQIRSALHYALFSGGKRIRPILVYLAGDLI-DV---DQG---VLDIIAAALEL 81 (313)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHCCSSCCHHHHHHHHHHHHT-TC---CHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHhCCCCcHHHHHHHHHHHHh-CC---CHH---HHHHHHHHHHH
Confidence 55555555444444 1121111112467899999988 999999999999999999 44 232 46789999999
Q ss_pred HHHHHHHhhhh--cCCCCCCcCcccccccccchhhHhhhHHHHHHHHHHHHHcccCC--C-chHHHHHHHHHHHH--HHH
Q 019339 85 LQAYFLVLDDI--MDGSHTRRGQPCWFRVPKVGMIAANDGVLLRNHISRILKNHFRD--K-PYYVDLLDLFNEVE--FQT 157 (342)
Q Consensus 85 lH~asLihDDI--~D~~~~RRg~p~~~~~~g~~~ia~~d~~~l~~~~~~~l~~~~~~--~-~~~~~~~~~~~~~~--~~~ 157 (342)
||+|||||||| ||+|++|||+||+|++||++ ++|+.|+++++.++.++++.... . ....++++.+++++ ..+
T Consensus 82 iH~aSLIHDDip~mD~~~~RRG~pt~h~~~G~~-~AIlaGD~Ll~~a~~~l~~~~~~~~~~~~~~~~i~~la~a~g~~~m 160 (313)
T 3lom_A 82 THCYSLIHDDLPAMDNDDLRRGKPSCHKAFDEA-TAILVGDGMQALAIEVLLMRLSPLLPAAQVVAITQVLVNASGISGM 160 (313)
T ss_dssp HHHHHHHHHHSTTTTCCSEETTEECHHHHSCHH-HHHHHHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHSTTTH
T ss_pred HHHHHHHhCCcccccCCCccCCCCCchhhcChH-HHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHhHhHH
Confidence 99999999999 99999999999999999987 34444555557888888876322 2 23567788888876 589
Q ss_pred hHHHHHhccccccCcccCCCCCHHHHHHHHHcchhhhhhHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHHHHHHhhhh
Q 019339 158 ASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAG--ENLDKHVEVKDILVQMGIYFQVQDDFL 235 (342)
Q Consensus 158 ~~GQ~~d~~~~~~~~~~~~~~~~~~y~~~~~~KTg~l~~~~~~~~ga~lag--~~~~~~~~l~~~g~~lG~afQi~DDll 235 (342)
+.||.+|+.+.... .+++++|++|+.+|||+| |+++|++ ++++| ++++..+.+++||.++|+||||+||++
T Consensus 161 ~~GQ~lDl~~~~~~-----~~t~~~y~~i~~~KTg~L-~~~a~~~-a~lag~~a~~~~~~~l~~~g~~lGlaFQI~DDil 233 (313)
T 3lom_A 161 VSGQSLDLSELAKS-----SVTEEQLREIHLLKTGKL-ILACFEM-VLAAQHEVSEQIKSALRTYGKHIGLVFQMQDDYL 233 (313)
T ss_dssp HHHHHHHHHTTTSS-----CCCHHHHHHHHHHHTHHH-HHHHHHH-HHTTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHccCCC-----CCCHHHHHHHHHcCcHHH-HHHHHHH-HHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999987531 579999999999999999 9999999 99999 899999999999999999999999999
Q ss_pred hhcCCccccCC-cccchhhccchHHHHHHHhhccHHHHHHHHHHhCCCChHhHHHHHHHHHHcChHHHHHHHHHHHHHHH
Q 019339 236 DCFGSPEVIGK-VGTDIEDYKCSWLVVKALELCNEEQKKLVHENYGKVDPACVAKVKELYKTLDLEGAFVEYEKESYEKL 314 (342)
Q Consensus 236 d~~~~~~~~GK-~~~Dl~~gk~Tlp~l~al~~~~~~~~~~l~~~~~~~~~~~~~~i~~li~~~g~~~~~~~~~~~~~~~a 314 (342)
|++++++++|| .|+|+++||+|||+++++ +.++..++++.++|
T Consensus 234 D~~gd~~~~GK~~g~Dl~~gK~T~p~l~~l------------------------------------~~a~~~a~~~~~~A 277 (313)
T 3lom_A 234 DLYAPTQILGKGRSSDQANQKTTFATLFNK------------------------------------QQLEEEIAVHYQIA 277 (313)
T ss_dssp HHHCC---------------CCCHHHHSCH------------------------------------HHHHHHHHHHHHHH
T ss_pred hccCCHHhhCCCCcchhhcCCccHHHHHHH------------------------------------HHHHHHHHHHHHHH
Confidence 99999999999 899999999999999954 44566788888999
Q ss_pred HHHhhcCCChHHHHHHHHHHHHHhhccC
Q 019339 315 TKSIEAHPTKEVQAVLKSFLAKIYKRQK 342 (342)
Q Consensus 315 ~~~l~~lp~~~~~~~L~~l~~~~~~R~~ 342 (342)
.+.|+.+|++ ++.|..+++++++|++
T Consensus 278 ~~~L~~l~~~--~~~L~~la~~~~~R~~ 303 (313)
T 3lom_A 278 MDSLRLFGSK--AAALIELTKQLQNRSN 303 (313)
T ss_dssp HHTTTTTGGG--GHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCcc--HHHHHHHHHHHHhccc
Confidence 9999999975 7899999999999963
No 32
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens}
Probab=100.00 E-value=2.5e-58 Score=433.83 Aligned_cols=258 Identities=22% Similarity=0.296 Sum_probs=208.5
Q ss_pred HHHHHHHhhccc-CCCccchHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhh--cCCCCCCcCcccc
Q 019339 32 RQWVDRMLDYNV-PGGKLNRGLSVVDSYRLLKEGKELTDDEFFLSSALGWCIEWLQAYFLVLDDI--MDGSHTRRGQPCW 108 (342)
Q Consensus 32 ~~~l~~~~~~~~-~~GK~~Rp~l~~~~~~~~~~g~~~~~~~~~~a~~lA~a~EllH~asLihDDI--~D~~~~RRg~p~~ 108 (342)
++.+.+++.|.+ .||||+||++|+++++++ |+ +++ .+.++|+++|+||+|||||||| ||+|++|||+||+
T Consensus 59 ~~~l~~~~~y~~~~gGKrlRp~L~l~~~~~~-g~---~~~---~~~~~A~aiEliH~aSLIHDDIP~mD~s~~RRG~pt~ 131 (324)
T 3uca_A 59 NKVLYDSMAYSINVGGKRIRPILMLLSYYIY-KS---DYK---KILTPAMAIEMIHTYSLIHDDLPCMDNDDLRRGKPTN 131 (324)
T ss_dssp CHHHHHHHHHHHHHCCCCHHHHHHHHHHHTT-CS---CGG---GGHHHHHHHHHHHHHHHHHHTSTTTTCCSEETTEECH
T ss_pred cHHHHHHHHHHHhCCCCcHHHHHHHHHHHHh-CC---CHH---HHHHHHHHHHHHHHHHHHHCCchhccCCCCCCCCccH
Confidence 467899999998 999999999999999999 44 232 4678999999999999999999 9999999999999
Q ss_pred cccccch-hhHhhhHHHHHHHHHHHHHcccCCCchH-HHHHHHHHHHH--HHHhHHHHHhccccccCcccCCCCCHHHHH
Q 019339 109 FRVPKVG-MIAANDGVLLRNHISRILKNHFRDKPYY-VDLLDLFNEVE--FQTASGQMIDLITTIEGEKDLSKYSLPLHR 184 (342)
Q Consensus 109 ~~~~g~~-~ia~~d~~~l~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~--~~~~~GQ~~d~~~~~~~~~~~~~~~~~~y~ 184 (342)
|++||++ +|++||+++ +.++..+.+...++... .++++.++++. ..++.||.+|+.+..+. .+++++|+
T Consensus 132 h~~~G~~~AIlaGD~Ll--~~A~~~l~~~~~~~~~~~~~~i~~la~a~g~~~m~~GQ~lDl~~~~~~-----~~t~~~y~ 204 (324)
T 3uca_A 132 HKVFGEAIAVLAGDALL--NEAMKILVDYSLEEGKSALKATKIIADAAGSDGMIGGQIVDIINEDKE-----EISLKELD 204 (324)
T ss_dssp HHHHCHHHHHHHHHHHH--HHHHHHHHHHHHHHCHHHHHHHHHHHHHHSTTTHHHHHHHHHHTSSCS-----SCCHHHHH
T ss_pred HHhcChHHHHHHHHHHH--HHHHHHHHhcCCChhhHHHHHHHHHHHHHhHhHHHHhHHHHHHcCCCC-----CCCHHHHH
Confidence 9999998 555555554 67788887642111222 57788888875 67999999999987532 57999999
Q ss_pred HHHHcchhhhhhHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCccccCC-cccchhhccchHHHHHH
Q 019339 185 RIVQYKTAYYSFYLPVACALLMAGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGK-VGTDIEDYKCSWLVVKA 263 (342)
Q Consensus 185 ~~~~~KTg~l~~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DDlld~~~~~~~~GK-~~~Dl~~gk~Tlp~l~a 263 (342)
+|+.+|||+| |++||++|++++|++++..+.+++||.++|+||||+||++|++++++++|| .|+|+++||+|||++++
T Consensus 205 ~i~~~KTa~L-~~~a~~~Ga~laga~~~~~~~l~~~g~~lGlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~a 283 (324)
T 3uca_A 205 YMHLKKTGEL-IKASIMSGAVLAEASEGDIKKLEGFGYKLGLAFQIKDDILDVVGNAKDLGKNVHKDQESNKNNYITIFG 283 (324)
T ss_dssp HHHHHHTHHH-HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----------------CHHHHHC
T ss_pred HHHhcchHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCCcchHhhcCCccHHHHHH
Confidence 9999999999 999999999999999999999999999999999999999999999999999 89999999999999997
Q ss_pred HhhccHHHHHHHHHHhCCCChHhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhccC
Q 019339 264 LELCNEEQKKLVHENYGKVDPACVAKVKELYKTLDLEGAFVEYEKESYEKLTKSIEAHPTKEVQAVLKSFLAKIYKRQK 342 (342)
Q Consensus 264 l~~~~~~~~~~l~~~~~~~~~~~~~~i~~li~~~g~~~~~~~~~~~~~~~a~~~l~~lp~~~~~~~L~~l~~~~~~R~~ 342 (342)
++ .++..++++.++|.+.|+.+|.+ ++.|..+++++++|++
T Consensus 284 l~------------------------------------~a~~~a~~~~~~A~~~L~~l~~~--~~~L~~la~~i~~R~~ 324 (324)
T 3uca_A 284 LE------------------------------------ECKKKCVNITEECIEILSSIKGN--TEPLKVLTMKLLERKF 324 (324)
T ss_dssp HH------------------------------------HHHHHHHHHHHHHHHHHHTSSSC--CHHHHHHHHHHHHCCC
T ss_pred HH------------------------------------HHHHHHHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHhccC
Confidence 54 45667888999999999999975 4899999999999985
No 33
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1
Probab=100.00 E-value=2e-58 Score=431.88 Aligned_cols=280 Identities=23% Similarity=0.223 Sum_probs=206.1
Q ss_pred HHHHHHHHHHHHHhCC-CCCCCCcchHHHHHHHhhccc-CCCccchHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHHH
Q 019339 7 RFIEVYGVLKQELLND-PAFEFDHDSRQWVDRMLDYNV-PGGKLNRGLSVVDSYRLLKEGKELTDDEFFLSSALGWCIEW 84 (342)
Q Consensus 7 ~f~~~~~~l~~~l~~~-~~~~~~~~~~~~l~~~~~~~~-~~GK~~Rp~l~~~~~~~~~~g~~~~~~~~~~a~~lA~a~El 84 (342)
.+......+.+.|.+. .... ..++.+.+++.|.+ .||||+||.+|+++++++ |+ +++ .+.++|+++|+
T Consensus 12 ~~~~~~~~ve~~l~~~l~~~~---~~~~~l~~~~~y~~~~gGKrlRp~L~l~~~~~~-g~---~~~---~~~~~A~aiEl 81 (302)
T 3p8r_A 12 ALSSYQQRNNQQLDQWLNRIP---FQTLPLIEAMRYGLLLGGKRARPYLVYITGQML-GC---ELS---DLDTPASAVEC 81 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHTCS---CTTSSHHHHHHHHHHSCCSCHHHHHHHHHHHTT-TC---CGG---GTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcc---CCcHHHHHHHHHHHhCCCCcHHHHHHHHHHHHh-CC---CHH---HHHHHHHHHHH
Confidence 3445555566666541 1110 12245888999998 999999999999999999 44 232 36789999999
Q ss_pred HHHHHHHhhhh--cCCCCCCcCcccccccccchhhHhhhHHHHHHHHHHHHHcccCC---CchHHHHHHHHHHHH--HHH
Q 019339 85 LQAYFLVLDDI--MDGSHTRRGQPCWFRVPKVGMIAANDGVLLRNHISRILKNHFRD---KPYYVDLLDLFNEVE--FQT 157 (342)
Q Consensus 85 lH~asLihDDI--~D~~~~RRg~p~~~~~~g~~~ia~~d~~~l~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~--~~~ 157 (342)
||+|||||||| ||+|++|||+||+|++||++ ++|+.|+++++.++..+++...+ .....++++.+++++ ..+
T Consensus 82 iH~asLIHDDIp~mD~s~~RRG~pt~h~~~G~~-~AIlaGD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~a~g~~~~ 160 (302)
T 3p8r_A 82 IHAYSLIHDDLPAMDDDELRRGKPTCHIQFDEA-TAILTGDALQTLAFTILAEGDLSAAGETQRVAMLQALAEASGAQGM 160 (302)
T ss_dssp HHHHHHHHHTCHHHHCCC--------------H-HHHHHHHHHHHHHHHHHHHSCCCHHHHTTHHHHHHHHHHHHSTTTH
T ss_pred HHHHHHHHCCcccccCCCcCCCCcchhhhcCHH-HHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHhHhHH
Confidence 99999999999 99999999999999999987 45555555567888999875311 112456788888876 589
Q ss_pred hHHHHHhccccccCcccCCCCCHHHHHHHHHcchhhhhhHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 019339 158 ASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAG-ENLDKHVEVKDILVQMGIYFQVQDDFLD 236 (342)
Q Consensus 158 ~~GQ~~d~~~~~~~~~~~~~~~~~~y~~~~~~KTg~l~~~~~~~~ga~lag-~~~~~~~~l~~~g~~lG~afQi~DDlld 236 (342)
+.||.+|+.+... .+++++|++|+.+|||+| |+++|++|++++| ++++..+.+++||.++|+||||+||++|
T Consensus 161 ~~GQ~lDl~~~~~------~~s~~~y~~i~~~KTa~L-~~~~~~~ga~lag~~~~~~~~~l~~~g~~lG~aFQI~DDilD 233 (302)
T 3p8r_A 161 CLGQALDLAAENR------LISLEELETIHRNKTGAL-MRCAIRLGALAAGEKGRAMLPHLDRYAEAVGLAFQVQDDILD 233 (302)
T ss_dssp HHHHHHHHHTTTS------CCCHHHHHHHHHHHTHHH-HHHHHHHHHHTTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHccCC------CCCHHHHHHHhccCcHHH-HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999998642 579999999999999999 9999999999999 7888889999999999999999999999
Q ss_pred hcCCccccCC-cccchhhccchHHHHHHHhhccHHHHHHHHHHhCCCChHhHHHHHHHHHHcChHHHHHHHHHHHHHHHH
Q 019339 237 CFGSPEVIGK-VGTDIEDYKCSWLVVKALELCNEEQKKLVHENYGKVDPACVAKVKELYKTLDLEGAFVEYEKESYEKLT 315 (342)
Q Consensus 237 ~~~~~~~~GK-~~~Dl~~gk~Tlp~l~al~~~~~~~~~~l~~~~~~~~~~~~~~i~~li~~~g~~~~~~~~~~~~~~~a~ 315 (342)
++++++.+|| .|+|+++||+|||+++++ +.++..++++.++|.
T Consensus 234 ~~~~~~~~GK~~g~Dl~egK~T~p~l~~l------------------------------------~~a~~~a~~~~~~A~ 277 (302)
T 3p8r_A 234 IISDTETLGKPQGSDQELNKSTYPALLGL------------------------------------EGAQQKAHTLLQEAL 277 (302)
T ss_dssp HTTC---------------CCCHHHHHHH------------------------------------HHHHHHHHHHHHHHH
T ss_pred ccCCHHHhCCCcchHHhcCCchHHHHHHH------------------------------------HHHHHHHHHHHHHHH
Confidence 9999999999 899999999999999964 456678888999999
Q ss_pred HHhhcCCChHHHHHHHHHHHHHhhccC
Q 019339 316 KSIEAHPTKEVQAVLKSFLAKIYKRQK 342 (342)
Q Consensus 316 ~~l~~lp~~~~~~~L~~l~~~~~~R~~ 342 (342)
+.|+.+|++ ++.|..+++++++|++
T Consensus 278 ~~L~~l~~~--~~~L~~l~~~~~~R~~ 302 (302)
T 3p8r_A 278 LALEAIPYN--TEHLEEFARYVVERKN 302 (302)
T ss_dssp HHHTTCSSC--THHHHHHHHHHHHCCC
T ss_pred HHHHhCCcc--HHHHHHHHHHHHhccC
Confidence 999999976 7899999999999985
No 34
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=100.00 E-value=1.5e-58 Score=432.23 Aligned_cols=259 Identities=20% Similarity=0.228 Sum_probs=209.0
Q ss_pred HHHHHHHhhccc-CCCccchHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhh--cCCCCCCcCcccc
Q 019339 32 RQWVDRMLDYNV-PGGKLNRGLSVVDSYRLLKEGKELTDDEFFLSSALGWCIEWLQAYFLVLDDI--MDGSHTRRGQPCW 108 (342)
Q Consensus 32 ~~~l~~~~~~~~-~~GK~~Rp~l~~~~~~~~~~g~~~~~~~~~~a~~lA~a~EllH~asLihDDI--~D~~~~RRg~p~~ 108 (342)
++.+.+++.|.+ .||||+||.+|+++++++ |+ +.++ .++++|+++|+||+|||||||| ||+|++|||+||+
T Consensus 35 ~~~l~~~~~y~~~~gGKrlRp~L~l~~~~~~-g~-~~~~----~~~~~A~avEliH~asLIHDDIP~mD~s~~RRG~pt~ 108 (302)
T 3p8l_A 35 NERLKEAMLYSIHAGGKRLRPLLVLTTVAAF-QK-EMET----QDYQVAASLEMIHTYSLIHDDLPAMDDDDLRRGKPTN 108 (302)
T ss_dssp CHHHHHHHHHHHHTCCCCHHHHHHHHHHHHT-TC-CCCH----HHHHHHHHHHHHHHHHHHHHHSTTTTCCSEETTEECH
T ss_pred cHHHHHHHHHHHhCCCCcHHHHHHHHHHHHh-CC-CccH----HHHHHHHHHHHHHHHHHHHCCchhccCCCccCCCcch
Confidence 367899999998 999999999999999999 44 2221 3568999999999999999999 9999999999999
Q ss_pred cccccchhhHhhhHHHHHHHHHHHHHcccCCCchHHHHHHHHHHHH--HHHhHHHHHhccccccCcccCCCCCHHHHHHH
Q 019339 109 FRVPKVGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVE--FQTASGQMIDLITTIEGEKDLSKYSLPLHRRI 186 (342)
Q Consensus 109 ~~~~g~~~ia~~d~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~GQ~~d~~~~~~~~~~~~~~~~~~y~~~ 186 (342)
|++||++ ++|+.|+++++.++..+.+...+.....++++.+++++ ..++.||.+|+.+... .+++++|++|
T Consensus 109 h~~~G~~-~AIlaGD~Ll~~A~~~l~~~~~~~~~~~~~~~~l~~a~g~~~~~~GQ~lDl~~~~~------~~t~~~y~~i 181 (302)
T 3p8l_A 109 HKVFGEA-TAILAGDGLLTGAFQLLSLSQLGLSEKVLLMQQLAKAAGNQGMVSGQMGDIEGEKV------SLTLEELAAV 181 (302)
T ss_dssp HHHHCHH-HHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTTTS------CCCHHHHHHH
T ss_pred hhhcChH-HHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHccCC------CCCHHHHHHH
Confidence 9999987 45555555567788888875333234467888888876 6899999999998642 5799999999
Q ss_pred HHcchhhhhhHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCccccCC-cccchhhccchHHHHHHHh
Q 019339 187 VQYKTAYYSFYLPVACALLMAGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGK-VGTDIEDYKCSWLVVKALE 265 (342)
Q Consensus 187 ~~~KTg~l~~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DDlld~~~~~~~~GK-~~~Dl~~gk~Tlp~l~al~ 265 (342)
+.+|||+| |++||++|++++|++++..+.+++||.++|+||||+||++|++++++.+|| .|+|+++||+|||++++++
T Consensus 182 ~~~KTg~L-~~~~~~~ga~laga~~~~~~~l~~~g~~lGlaFQI~DDilD~~~d~~~~GK~~g~Dl~egK~T~p~l~~l~ 260 (302)
T 3p8l_A 182 HEKKTGAL-IEFALIAGGVLANQTEEVIGLLTQFAHHYGLAFQIRDDLLDATSTEADLGKKVGRDEALNKSTYPALLGIA 260 (302)
T ss_dssp HHHHTHHH-HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-----------------CCHHHHHCHH
T ss_pred HHcCcHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCChhhHHhcCCCcHHHHHHHH
Confidence 99999999 999999999999999999999999999999999999999999999999999 8999999999999999666
Q ss_pred hccHHHHHHHHHHhCCCChHhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHhhcCCC---hHHHHHHHHHHHHHhhc
Q 019339 266 LCNEEQKKLVHENYGKVDPACVAKVKELYKTLDLEGAFVEYEKESYEKLTKSIEAHPT---KEVQAVLKSFLAKIYKR 340 (342)
Q Consensus 266 ~~~~~~~~~l~~~~~~~~~~~~~~i~~li~~~g~~~~~~~~~~~~~~~a~~~l~~lp~---~~~~~~L~~l~~~~~~R 340 (342)
. +++.++++.++|.+.|+.+|+ ++.++.|..+++++++|
T Consensus 261 ~------------------------------------a~~~~~~~~~~A~~~L~~~~~~~~~~~~~~L~~l~~~~~~R 302 (302)
T 3p8l_A 261 G------------------------------------AKDALTHQLAEGSAVLEKIKANVPNFSEEHLANLLTQLQLR 302 (302)
T ss_dssp H------------------------------------HHHHHHHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHHTSCC
T ss_pred H------------------------------------HHHHHHHHHHHHHHHHHhcccccCChhHHHHHHHHHHHhhC
Confidence 4 344677788899999999975 66789999999999987
No 35
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei}
Probab=100.00 E-value=3.8e-58 Score=428.43 Aligned_cols=271 Identities=16% Similarity=0.143 Sum_probs=222.6
Q ss_pred HHHHHHHHhC-CCCCCCCcchHHHHHHHhhccc-CCCccchHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHHHHHHHH
Q 019339 12 YGVLKQELLN-DPAFEFDHDSRQWVDRMLDYNV-PGGKLNRGLSVVDSYRLLKEGKELTDDEFFLSSALGWCIEWLQAYF 89 (342)
Q Consensus 12 ~~~l~~~l~~-~~~~~~~~~~~~~l~~~~~~~~-~~GK~~Rp~l~~~~~~~~~~g~~~~~~~~~~a~~lA~a~EllH~as 89 (342)
++.|.+.|.+ ..... ++.+.+++.|.+ .||||+||.+|+++++++ |+. ++ .+.++|+++|+||+||
T Consensus 11 ~~~i~~~l~~~~~~~~-----~~~l~~~~~y~~~~gGKrlRp~L~l~~~~~~-g~~---~~---~~~~~A~avEliH~as 78 (295)
T 3ipi_A 11 YRYVEAGIKESITLIE-----DPGLKKMVEHVCHSGGKRIRPIILLLVSEIC-SGS---YS---RSLNAALAVEMMHSAS 78 (295)
T ss_dssp HHHHHHHHHHHHHTCC-----SHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH-HSC---CG---GGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhcC-----cHHHHHHHHHHHhCCCCcHHHHHHHHHHHHh-CCC---HH---HHHHHHHHHHHHHHHH
Confidence 5777777776 11111 166899999998 999999999999999999 442 22 3568999999999999
Q ss_pred HHhhhhcCCCCCCcCcccccccccchhhHhhhHHHHHHHHHHHHHcccCCCchHHHHHHHHHHHHHHHhHHHHHhccccc
Q 019339 90 LVLDDIMDGSHTRRGQPCWFRVPKVGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTI 169 (342)
Q Consensus 90 LihDDI~D~~~~RRg~p~~~~~~g~~~ia~~d~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~~d~~~~~ 169 (342)
||||||||+|++|||+||+|++||++ ++|+.|+++++.++.++++. ..++++.+++++..++.||.+|+.+..
T Consensus 79 LIHDDi~D~s~~RRG~pt~h~~~G~~-~AIlaGD~Ll~~a~~ll~~~------~~~~~~~~~~~~~~~~~GQ~~dl~~~~ 151 (295)
T 3ipi_A 79 LIHDDLLDQGLVRRNLPSAPEKFGPS-GALLCGDYLIAKSIAFISPY------GEKVIQDFGKAGMDMAEGEVLDLKLED 151 (295)
T ss_dssp HHHHHHHHHHTSCTTSCCCCCSSCHH-HHHHHHHHHHHHHHHHHGGG------CHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHCcCcCCCCCCCCCccHHHhcCcc-HHHHHHHHHHHHHHHHHHHc------hHHHHHHHHHHHHHHHccchHHHHccC
Confidence 99999999999999999999999987 44555555557788888764 147889999999999999999999865
Q ss_pred cCcccCCCCCHHHHHHHHHcchhhhhhHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCccccCCccc
Q 019339 170 EGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVGT 249 (342)
Q Consensus 170 ~~~~~~~~~~~~~y~~~~~~KTg~l~~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DDlld~~~~~~~~GK~~~ 249 (342)
. .+++++|++|+.+|||+| |+++|++|++++|++++..+.+++||.++|+||||+||++|++++++ ||
T Consensus 152 ~------~~t~~~y~~~i~~KTg~L-~~~a~~~ga~lag~~~~~~~~l~~~g~~lGlaFQI~DDilD~~~~~~--gk--- 219 (295)
T 3ipi_A 152 E------SFGENDYFKCIYKKTASL-FAISASIGAYTGGAEEELAERFSHFGNALGTAYQIVDDILEFLEVVE--GK--- 219 (295)
T ss_dssp ----------CHHHHHHHHHHTHHH-HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--C----
T ss_pred C------CCCHHHHHHHHHhhhHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc--CC---
Confidence 3 368899999999999999 99999999999999999999999999999999999999999998764 54
Q ss_pred chhhccchHHHHHHHhhccHHHHHHHHHHhCCCChHhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHhhcCCChHHHHH
Q 019339 250 DIEDYKCSWLVVKALELCNEEQKKLVHENYGKVDPACVAKVKELYKTLDLEGAFVEYEKESYEKLTKSIEAHPTKEVQAV 329 (342)
Q Consensus 250 Dl~~gk~Tlp~l~al~~~~~~~~~~l~~~~~~~~~~~~~~i~~li~~~g~~~~~~~~~~~~~~~a~~~l~~lp~~~~~~~ 329 (342)
|+.+||+|||++++++..++ ++++++++.++.|.++|++.|+.+|+++.++.
T Consensus 220 d~~~gk~Tlp~l~al~~~~~----------------------------~~le~a~~~a~~~~~~A~~~L~~lp~~~~~~~ 271 (295)
T 3ipi_A 220 ESKFTSETLPHIYMKSTSKE----------------------------EALKKSIDCVKLHVAAAKETLETFRECPARDK 271 (295)
T ss_dssp ------CCHHHHHTTTSCHH----------------------------HHHHHHHHHHHHHHHHHHHHHTTSCCSHHHHH
T ss_pred CcccCcccHHHHHHHhcCch----------------------------hHHHHHHHHHHHHHHHHHHHHHhCCCchHHHH
Confidence 78999999999999876321 24788999999999999999999999999999
Q ss_pred HHHHHHHHhhcc
Q 019339 330 LKSFLAKIYKRQ 341 (342)
Q Consensus 330 L~~l~~~~~~R~ 341 (342)
|..++++++.|.
T Consensus 272 L~~l~~~~~~~~ 283 (295)
T 3ipi_A 272 LFQITDYITVDM 283 (295)
T ss_dssp HHHHHHHTTGGG
T ss_pred HHHHHHHHHHhC
Confidence 999999999873
No 36
>1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A*
Probab=100.00 E-value=1.3e-58 Score=433.72 Aligned_cols=258 Identities=23% Similarity=0.266 Sum_probs=224.8
Q ss_pred HHHHHHhhccc-CCCccchHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhh--cCCCCCCcCccccc
Q 019339 33 QWVDRMLDYNV-PGGKLNRGLSVVDSYRLLKEGKELTDDEFFLSSALGWCIEWLQAYFLVLDDI--MDGSHTRRGQPCWF 109 (342)
Q Consensus 33 ~~l~~~~~~~~-~~GK~~Rp~l~~~~~~~~~~g~~~~~~~~~~a~~lA~a~EllH~asLihDDI--~D~~~~RRg~p~~~ 109 (342)
+.+.+++.|.+ .||||+||.+|+++++++ |+ +++ .++++|+++|+||+|||||||| ||+|++|||+||+|
T Consensus 30 ~~l~~~~~y~~~~gGKrlRp~l~l~~~~~~-g~---~~~---~~~~~A~avEliH~asLiHDDiP~~D~s~~RRG~pt~h 102 (299)
T 1rqj_A 30 TPVVETMQYGALLGGKRLRPFLVYATGHMF-GV---STN---TLDAPAAAVECIHAYSLIHDDLPAMDDDDLRRGLPTCH 102 (299)
T ss_dssp SHHHHHHHHHHHSSCCCHHHHHHHHHHHHT-TC---CHH---HHHHHHHHHHHHHHHHHHHHTSTTTTCCCEETTEECHH
T ss_pred HHHHHHHHHHHhCCCCcHHHHHHHHHHHHh-CC---CHH---HHHHHHHHHHHHHHhHHHhCCChhhcCCCCCCCCCChh
Confidence 45889999998 999999999999999999 44 232 3678999999999999999999 99999999999999
Q ss_pred ccccch-hhHhhhHHHHHHHHHHHHHccc---CCCchHHHHHHHHHHHH--HHHhHHHHHhccccccCcccCCCCCHHHH
Q 019339 110 RVPKVG-MIAANDGVLLRNHISRILKNHF---RDKPYYVDLLDLFNEVE--FQTASGQMIDLITTIEGEKDLSKYSLPLH 183 (342)
Q Consensus 110 ~~~g~~-~ia~~d~~~l~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~--~~~~~GQ~~d~~~~~~~~~~~~~~~~~~y 183 (342)
++||++ ++++||+ +++.++.++++.. .+.....++++.+++++ ..++.||.+|+.+..+ .+++++|
T Consensus 103 ~~~G~~~Ail~GD~--L~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~GQ~~dl~~~~~------~~~~~~y 174 (299)
T 1rqj_A 103 VKFGEANAILAGDA--LQTLAFSILSDADMPEVSDRDRISMISELASASGIAGMCGGQALDLDAEGK------HVPLDAL 174 (299)
T ss_dssp HHHCHHHHHHHHHH--HHHHHHHHHHHSCCTTCCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTTTT------CCCHHHH
T ss_pred hhcChHHHHHHHHH--HHHHHHHHHHHhhcccCChHHHHHHHHHHHHHhhhhHHHHhHHHHHhccCC------CCCHHHH
Confidence 999988 4555555 4567888888741 12223456788888876 7899999999998643 4699999
Q ss_pred HHHHHcchhhhhhHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCccccCC-cccchhhccchHHHH
Q 019339 184 RRIVQYKTAYYSFYLPVACALLM-AGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGK-VGTDIEDYKCSWLVV 261 (342)
Q Consensus 184 ~~~~~~KTg~l~~~~~~~~ga~l-ag~~~~~~~~l~~~g~~lG~afQi~DDlld~~~~~~~~GK-~~~Dl~~gk~Tlp~l 261 (342)
++|+.+|||+| |++||++|+++ +|++++..+.+++||.++|+||||+||++|++++++++|| .|+|+++||+|||++
T Consensus 175 ~~i~~~KTa~L-~~~~~~~ga~l~ag~~~~~~~~l~~~g~~lG~aFQi~DD~lD~~~~~~~~GK~~g~Dl~~gK~T~p~l 253 (299)
T 1rqj_A 175 ERIHRHKTGAL-IRAAVRLGALSAGDKGRRALPVLDKYAESIGLAFQVQDDILDVVGDTATLGKRQGADQQLGKSTYPAL 253 (299)
T ss_dssp HHHHHHHTHHH-HHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHSSCTTHHHHHTCCCHHHH
T ss_pred HHHHHhhhHHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCChhhHHHcCCCcHHHH
Confidence 99999999999 99999999999 9998889999999999999999999999999999999999 899999999999999
Q ss_pred HHHhhccHHHHHHHHHHhCCCChHhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHhhcCCC-hHHHHHHHHHHHHHhhc
Q 019339 262 KALELCNEEQKKLVHENYGKVDPACVAKVKELYKTLDLEGAFVEYEKESYEKLTKSIEAHPT-KEVQAVLKSFLAKIYKR 340 (342)
Q Consensus 262 ~al~~~~~~~~~~l~~~~~~~~~~~~~~i~~li~~~g~~~~~~~~~~~~~~~a~~~l~~lp~-~~~~~~L~~l~~~~~~R 340 (342)
++++ .++..++.+.++|.+.|+.+|. ++.++.|..+++++++|
T Consensus 254 ~~l~------------------------------------~a~~~~~~~~~~A~~~L~~l~~~~~~~~~L~~l~~~~~~R 297 (299)
T 1rqj_A 254 LGLE------------------------------------QARKKARDLIDDARQSLKQLAEQSLDTSALEALADYIIQR 297 (299)
T ss_dssp HCHH------------------------------------HHHHHHHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHC
T ss_pred HHHH------------------------------------HHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhc
Confidence 9874 2456788899999999999986 44789999999999999
Q ss_pred cC
Q 019339 341 QK 342 (342)
Q Consensus 341 ~~ 342 (342)
++
T Consensus 298 ~~ 299 (299)
T 1rqj_A 298 NK 299 (299)
T ss_dssp CC
T ss_pred cC
Confidence 75
No 37
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=100.00 E-value=1.5e-58 Score=431.54 Aligned_cols=256 Identities=21% Similarity=0.267 Sum_probs=199.3
Q ss_pred HHHHHHhhcccCCCccchHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhh--cCCCCCCcCcccccc
Q 019339 33 QWVDRMLDYNVPGGKLNRGLSVVDSYRLLKEGKELTDDEFFLSSALGWCIEWLQAYFLVLDDI--MDGSHTRRGQPCWFR 110 (342)
Q Consensus 33 ~~l~~~~~~~~~~GK~~Rp~l~~~~~~~~~~g~~~~~~~~~~a~~lA~a~EllH~asLihDDI--~D~~~~RRg~p~~~~ 110 (342)
+.+.+++.|...||||+||++|+++++++ |+ +++ .+.++|+++|+||+|||||||| ||+|++|||+||+|+
T Consensus 28 ~~l~~~~~y~~~gGKrlRp~L~l~~~~~~-g~---~~~---~~~~~A~avEliH~asLIHDDip~mD~s~~RRG~pt~h~ 100 (297)
T 3m0g_A 28 GDLRDAMAYAAQGGKRLRAFLAIESAAIH-GI---SMA---QAMPAALAVEALHAYSLVHDDMPCMDNDDLRRGLPTVHK 100 (297)
T ss_dssp SHHHHHHHHHHSCSCCHHHHHHHHHHHHT-TC---CHH---HHHHHHHHHHHHHHHHHHHHTSTTTTCCSEETTEECHHH
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHHh-CC---CHH---HHHHHHHHHHHHHHHHHHhcCccccCCCCccCCCCCchh
Confidence 45888999988899999999999999999 44 233 4678999999999999999999 999999999999999
Q ss_pred cccchhhHhhhHHHHHHHHHHHHHcccC-CCchHHHHHHHHHHHH--HHHhHHHHHhccccccCcccCCCCCHHHHHHHH
Q 019339 111 VPKVGMIAANDGVLLRNHISRILKNHFR-DKPYYVDLLDLFNEVE--FQTASGQMIDLITTIEGEKDLSKYSLPLHRRIV 187 (342)
Q Consensus 111 ~~g~~~ia~~d~~~l~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~--~~~~~GQ~~d~~~~~~~~~~~~~~~~~~y~~~~ 187 (342)
+||++ ++|+.|+++++.++..+++... +.....++++.+++++ ..++.||.+|+.+...+. .+++++|++|+
T Consensus 101 ~~G~~-~AIlaGD~Ll~~a~~~l~~~~~~~~~~~~~~~~~l~~~~g~~~~~~GQ~lDl~~~~~~~----~~~~~~y~~i~ 175 (297)
T 3m0g_A 101 KWDDA-TAVLAGDALQTLAFELCTDPVLGSAENRVALVAALAQASGAEGMVYGQALDIAAETAAV----PLTLDEIIRLQ 175 (297)
T ss_dssp HSCHH-HHHHHHHHHHHHHHHHTTCGGGCCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHHTTSSS----CCCHHHHHHHH
T ss_pred hcChH-HHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHhHhHHHHhHHHHHHhhhcCC----CCCHHHHHHHH
Confidence 99987 4455555555788888887532 2223467888999988 789999999999873222 57999999999
Q ss_pred HcchhhhhhHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCccccCC-cccchhhccchHHHHHHHhh
Q 019339 188 QYKTAYYSFYLPVACALLMAGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGK-VGTDIEDYKCSWLVVKALEL 266 (342)
Q Consensus 188 ~~KTg~l~~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DDlld~~~~~~~~GK-~~~Dl~~gk~Tlp~l~al~~ 266 (342)
.+|||+| |+++|++|++++|++++ .+++||.++|+||||+||++|++++++++|| .|+|+++||+|||++++++
T Consensus 176 ~~KTg~L-~~~~~~~ga~lag~~~~---~l~~~g~~lG~aFQI~DDilD~~~~~~~~GK~~g~Dl~~gK~T~p~l~~l~- 250 (297)
T 3m0g_A 176 AGKTGAL-ISFAAQAGAILAGADRG---PLTAYATALGLAFQIADDILDVEGNEEAAGKRLGKDAEAHKATFVSLLGLA- 250 (297)
T ss_dssp HHHTHHH-HHHHHHHHHHHHTCCCH---HHHHHHHHHHHHHHHHTTCC---------------------CCHHHHHCSS-
T ss_pred ccchHHH-HHHHHHHHHHHcCCCHH---HHHHHHHHHHHHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHH-
Confidence 9999999 99999999999999876 8999999999999999999999999999999 8999999999999999654
Q ss_pred ccHHHHHHHHHHhCCCChHhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhccC
Q 019339 267 CNEEQKKLVHENYGKVDPACVAKVKELYKTLDLEGAFVEYEKESYEKLTKSIEAHPTKEVQAVLKSFLAKIYKRQK 342 (342)
Q Consensus 267 ~~~~~~~~l~~~~~~~~~~~~~~i~~li~~~g~~~~~~~~~~~~~~~a~~~l~~lp~~~~~~~L~~l~~~~~~R~~ 342 (342)
.+++.++++.++|.+.|+.+|++. +.|..+++++++|++
T Consensus 251 -----------------------------------~a~~~~~~~~~~A~~~L~~~~~~~--~~L~~l~~~~~~R~~ 289 (297)
T 3m0g_A 251 -----------------------------------GAKSRAADLVAEAEAALAPYGEAA--STLRACARYVIERDK 289 (297)
T ss_dssp -----------------------------------HHHHHHHHHHHHHHHHTGGGGGGG--HHHHHHHHHHTC---
T ss_pred -----------------------------------HHHHHHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHhcc
Confidence 345567778889999999999764 889999999999974
No 38
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A*
Probab=100.00 E-value=1.2e-57 Score=427.66 Aligned_cols=293 Identities=20% Similarity=0.222 Sum_probs=217.7
Q ss_pred CchhHHHHHHHHHHHHHHHhC--CCCCCCCcchHHHHHHHhhccc-CCCccchHHHHHHHHHHhhCCCCCChHHHHHHHH
Q 019339 1 MSDLKSRFIEVYGVLKQELLN--DPAFEFDHDSRQWVDRMLDYNV-PGGKLNRGLSVVDSYRLLKEGKELTDDEFFLSSA 77 (342)
Q Consensus 1 ~~~~~~~f~~~~~~l~~~l~~--~~~~~~~~~~~~~l~~~~~~~~-~~GK~~Rp~l~~~~~~~~~~g~~~~~~~~~~a~~ 77 (342)
||-..-+|.+++...+. ++. ...++.....++++.+++.|.+ .||||+||++|+++++++ |+....++....+.+
T Consensus 1 ~~~~~~~~~~~~~~~~~-ve~~l~~~~~~~~~~~~~l~~a~~y~~~~gGKrlRp~Lvl~~~~~~-g~~~~~~~~~~~~~~ 78 (311)
T 3llw_A 1 MSLSSPNLSFYYNECER-FESFLKNHHLHLESFHPYLEKAFFEMVLNGGKRFRPKLFLAVLCAL-VGQKDYSNQQTEYFK 78 (311)
T ss_dssp -CCCCHHHHHHHHHHHH-HHHHHHTCCCCCCSSCSSHHHHHHHHHHSCCCCHHHHHHHHHHHHH-SCHHHHHHSHHHHHH
T ss_pred CCCccccHHHHHHHHHH-HHHHHHHHhhhccCCcHHHHHHHHHHhhCCCCchHHHHHHHHHHHh-CCCcccccchHHHHH
Confidence 44444456666555444 444 2222211123356999999998 999999999999999999 441000111245788
Q ss_pred HHHHHHHHHHHHHHhhhh--cCCCCCCcCcccccccccch-hhHhhhHHHHHHHHHHHHHcccCCCchHHHHHHHHHHH-
Q 019339 78 LGWCIEWLQAYFLVLDDI--MDGSHTRRGQPCWFRVPKVG-MIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEV- 153 (342)
Q Consensus 78 lA~a~EllH~asLihDDI--~D~~~~RRg~p~~~~~~g~~-~ia~~d~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~- 153 (342)
+|+++|+||+|||||||| ||+|++|||+||+|++||.. +|++||++ ++.++.++++...+++...++++.++++
T Consensus 79 ~A~aiEliH~aSLIHDDIp~mD~s~~RRG~pt~h~~~G~~~AIlaGD~L--l~~Af~~l~~~~~~~~~~~~~i~~la~a~ 156 (311)
T 3llw_A 79 IALSIECLHTYSLIHDDLPCMDNAALRRNHPTLHAKYDETTAVLIGDAL--NTYSFELLSNALLESHIIVELIKILSANG 156 (311)
T ss_dssp HHHHHHHHHHHHHHHHTSTTTTCCSEETTEECHHHHTCHHHHHHHHHHH--HHHHHHHHHHSCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCccccCCCcccCCCCchhhhcCHHHHHHHHHHH--HHHHHHHHHhcCCChHHHHHHHHHHHHHH
Confidence 999999999999999999 99999999999999999987 55556655 4678888887322333346788888887
Q ss_pred -HHHHhHHHHHhccccccCcccCCCCCHHHHHHHHHcchhhhhhHHHHHHHHHHcCCCHHHH-HHHHHHHHHHHHHHHHH
Q 019339 154 -EFQTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAGENLDKH-VEVKDILVQMGIYFQVQ 231 (342)
Q Consensus 154 -~~~~~~GQ~~d~~~~~~~~~~~~~~~~~~y~~~~~~KTg~l~~~~~~~~ga~lag~~~~~~-~~l~~~g~~lG~afQi~ 231 (342)
+..|+.||.+|+.+... .+++++|++|+.+|||+| |+++|++|++++|++++.+ +.+++||.++|+||||+
T Consensus 157 g~~~m~~GQ~lDl~~~~~------~~t~~~y~~i~~~KTg~L-~~~a~~lga~laga~~~~~~~~l~~~g~~lGlaFQI~ 229 (311)
T 3llw_A 157 GIKGMILGQALDCYFENT------PLNLEQLTFLHEHKTAKL-ISASLIMGLVASGIKDEELFKWLQAFGLKMGLCFQVL 229 (311)
T ss_dssp STTTHHHHHHHHHHTTTS------CCCHHHHHHHHHHHTHHH-HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHhcCC------CCCHHHHHHHHHHhHHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999998632 579999999999999999 9999999999999998888 99999999999999999
Q ss_pred hhhhhhcCCccccCCcccchhhccchHHHHHHHhhccHHHHHHHHHHhCCCChHhHHHHHHHHHHcChHHHHHHHHHHHH
Q 019339 232 DDFLDCFGSPEVIGKVGTDIEDYKCSWLVVKALELCNEEQKKLVHENYGKVDPACVAKVKELYKTLDLEGAFVEYEKESY 311 (342)
Q Consensus 232 DDlld~~~~~~~~GK~~~Dl~~gk~Tlp~l~al~~~~~~~~~~l~~~~~~~~~~~~~~i~~li~~~g~~~~~~~~~~~~~ 311 (342)
||++|++++++++||+..| ++||+|||++++++++++ .++++.
T Consensus 230 DDiLD~~gd~~~~GK~~g~-~~gK~T~p~l~~l~~a~~------------------------------------~~~~~~ 272 (311)
T 3llw_A 230 DDIIDVTQDEEESGKTTHL-DSAKNSFVNLLGLERANN------------------------------------YAQTLK 272 (311)
T ss_dssp HHHHHHHC--------------CCSCHHHHHCHHHHHH------------------------------------HHHHHH
T ss_pred HHHHhccCChHHHCccccc-ccCcchHHHHHHHHHHHH------------------------------------HHHHHH
Confidence 9999999999999995445 999999999999997543 344455
Q ss_pred HHHHHHhhcCCC-hHH-HHHHHHHHHHHhhcc
Q 019339 312 EKLTKSIEAHPT-KEV-QAVLKSFLAKIYKRQ 341 (342)
Q Consensus 312 ~~a~~~l~~lp~-~~~-~~~L~~l~~~~~~R~ 341 (342)
++|.+.|+.+|. +.. .+.|+.+++++++|.
T Consensus 273 ~~a~~~l~~~~~~~~~~~~~l~~l~~~~~~r~ 304 (311)
T 3llw_A 273 TEVLNDLDALKPAYPLLQENLNALLNTLFKGE 304 (311)
T ss_dssp HHHHHHHTTSTTTCHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHhhhccccCccHHHHHHHHHHHHHhcc
Confidence 577888888543 122 678999999999995
No 39
>2ftz_A Geranyltranstransferase; TM0161, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima}
Probab=100.00 E-value=5.3e-56 Score=411.85 Aligned_cols=264 Identities=19% Similarity=0.267 Sum_probs=215.7
Q ss_pred HHHHHHHHhCCCCCCCCcchHHHHHHHhhccc-CCCccchHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHHHHHHHHH
Q 019339 12 YGVLKQELLNDPAFEFDHDSRQWVDRMLDYNV-PGGKLNRGLSVVDSYRLLKEGKELTDDEFFLSSALGWCIEWLQAYFL 90 (342)
Q Consensus 12 ~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~GK~~Rp~l~~~~~~~~~~g~~~~~~~~~~a~~lA~a~EllH~asL 90 (342)
.+++.+.|.+...-. .++.+.+++.|.+ .||||+||.+|+++++++ |+ +++ .++.+|+++|+||+|||
T Consensus 15 ~~~v~~~l~~~l~~~----~~~~l~~~~~y~~~~gGKrlRp~L~l~~~~~~-g~---~~~---~~~~~A~avEliH~asL 83 (284)
T 2ftz_A 15 XEXVEERIREILRPG----WDLLTEEAMLYSATVGGXRIRPLLVLTLGEDL-GV---EEE---XLLDVAVAVELFHTASL 83 (284)
T ss_dssp HHHHHHHHHHHHSCS----SCCHHHHHHHHHHHSCCCCHHHHHHHHHHHHH-TC---CHH---HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhccc----CCHHHHHHHHHHHhCCCCcHHHHHHHHHHHHh-Cc---CHH---HHHHHHHHHHHHHHHHH
Confidence 455666665511001 2245889999998 999999999999999999 44 233 35789999999999999
Q ss_pred Hhhhh--cCCCCCCcCcccccccccch-hhHhhhHHHHHHHHHHHHHcccCCCchHHHHHHHHHHHHHHHhHHHHHhccc
Q 019339 91 VLDDI--MDGSHTRRGQPCWFRVPKVG-MIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLIT 167 (342)
Q Consensus 91 ihDDI--~D~~~~RRg~p~~~~~~g~~-~ia~~d~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~~d~~~ 167 (342)
||||| ||+|++|||+||+|++||++ ++++||+ +++.++..+++. ++ .++++.+++++..++.||.+|+.+
T Consensus 84 IHDDIP~~D~s~~RRG~pt~h~~~G~~~AIl~GD~--Ll~~a~~~l~~~--~~---~~~~~~l~~~~~~~~~GQ~ldl~~ 156 (284)
T 2ftz_A 84 IHDDLPPIDNADFRRGXPSCHRTYGEDIALLAGDG--LFFLAFSQISXI--GN---SXIFEEFSETAYXLLLGEAMDVEF 156 (284)
T ss_dssp HHHHSTTTTCCSEETTEECHHHHHCHHHHHHHHHH--HHHHHHHHHHTT--CC---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCCchhcCCCCCCCCCccHHhhcCHHHHHHHHHH--HHHHHHHHHHhC--Ch---HHHHHHHHHHHHHHhhhhHHHHHh
Confidence 99999 99999999999999999988 4555555 456788888875 21 378999999999999999999998
Q ss_pred cccCcccCCCCCHHHHHHHHHcchhhhhhHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCccccCC-
Q 019339 168 TIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGK- 246 (342)
Q Consensus 168 ~~~~~~~~~~~~~~~y~~~~~~KTg~l~~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DDlld~~~~~~~~GK- 246 (342)
..+. ..+++++|++|+.+|||+| |++||++|++++|++++ .+++||.++|+||||+||++|++++++.+||
T Consensus 157 ~~~~----~~~~~~~y~~i~~~KTa~L-~~~~~~~ga~lag~~~~---~l~~~g~~lG~aFQI~DD~lD~~~d~~~~GK~ 228 (284)
T 2ftz_A 157 ERRX----MEVSQEMVERMYAFXTGAL-FAFCFSAPFILXGXDHT---XMXLLGEXFGVAFQIYDDLXDILGSFEKVGKD 228 (284)
T ss_dssp HHSC----CCCCHHHHHHHHHHHTHHH-HHHHHHHHHHHHTCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHCCCC---
T ss_pred ccCc----CCCCHHHHHHHHHhhhHHH-HHHHHHHHHHHhCCChh---HHHHHHHHHHHHHHHHHhhhhhcCCHHhhCCC
Confidence 6532 1479999999999999999 99999999999999876 8999999999999999999999999999999
Q ss_pred cccchhhccchHHHHHHHhhccHHHHHHHHHHhCCCChHhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHhhcCCChHH
Q 019339 247 VGTDIEDYKCSWLVVKALELCNEEQKKLVHENYGKVDPACVAKVKELYKTLDLEGAFVEYEKESYEKLTKSIEAHPTKEV 326 (342)
Q Consensus 247 ~~~Dl~~gk~Tlp~l~al~~~~~~~~~~l~~~~~~~~~~~~~~i~~li~~~g~~~~~~~~~~~~~~~a~~~l~~lp~~~~ 326 (342)
.|+|++ |+|||++++++ .+++.+++|.++|++.|+.+|+ +.
T Consensus 229 ~g~Dl~--K~T~p~l~~l~------------------------------------~a~~~a~~~~~~A~~~L~~l~~-~~ 269 (284)
T 2ftz_A 229 LGKDTE--XVTLVXXVGIQ------------------------------------XAREMADXYYEEVLXGIESEGL-FR 269 (284)
T ss_dssp ----------CHHHHHCHH------------------------------------HHHHHHHHHHHHHHHHHHHTTC-HH
T ss_pred cchhcc--ccchHHHHHHH------------------------------------HHHHHHHHHHHHHHHHHHhCCc-hh
Confidence 899999 99999999744 3567889999999999999997 67
Q ss_pred HHH-HHHHHHHHhhc
Q 019339 327 QAV-LKSFLAKIYKR 340 (342)
Q Consensus 327 ~~~-L~~l~~~~~~R 340 (342)
++. |..+++++++|
T Consensus 270 ~~~~L~~l~~~~~~R 284 (284)
T 2ftz_A 270 TLFLLXELXQMVEER 284 (284)
T ss_dssp HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHcC
Confidence 888 99999999987
No 40
>3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural genomics protein structure initiative; 1.50A {Campylobacter jejuni}
Probab=100.00 E-value=1.4e-55 Score=410.05 Aligned_cols=240 Identities=20% Similarity=0.237 Sum_probs=186.3
Q ss_pred HHHHHHHhCC-CCCCCCcchHHHHHHHhhccc-CCCccchHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHHHHHHHHH
Q 019339 13 GVLKQELLND-PAFEFDHDSRQWVDRMLDYNV-PGGKLNRGLSVVDSYRLLKEGKELTDDEFFLSSALGWCIEWLQAYFL 90 (342)
Q Consensus 13 ~~l~~~l~~~-~~~~~~~~~~~~l~~~~~~~~-~~GK~~Rp~l~~~~~~~~~~g~~~~~~~~~~a~~lA~a~EllH~asL 90 (342)
..|.+.|.+. ... ...++++.+++.|.+ .||||+||++|+++++++ ++ + ....+.++|+++|+||+|||
T Consensus 7 ~~i~~~l~~~~~~~---~~~~~~l~~~~~y~~~~gGKrlRp~L~l~~~~~~-~~---~--~~~~~~~~A~aiEliH~aSL 77 (291)
T 3npk_A 7 ELFIHHLEKNLPKV---ESFHPFFNEALALMLKAGGKHFRAQLLLSVVQSN-KP---E--LLNQALDVALALEFIHTYSL 77 (291)
T ss_dssp HHHHHHHHTCCCCC---CSSCSSHHHHHHHHHHHCCCCHHHHHHHHHHHHH-CG---G--GHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhc---cCCcHHHHHHHHHHHhCCCcchHHHHHHHHHHHh-CC---C--cHHHHHHHHHHHHHHHHHHH
Confidence 4455566552 111 122356899999998 999999999999999999 33 1 12346789999999999999
Q ss_pred Hhhhh--cCCCCCCcCcccccccccchhhHhhhHHHHHHHHHHHHHcccCCCchHHHHHHHHHHH--HHHHhHHHHHhcc
Q 019339 91 VLDDI--MDGSHTRRGQPCWFRVPKVGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEV--EFQTASGQMIDLI 166 (342)
Q Consensus 91 ihDDI--~D~~~~RRg~p~~~~~~g~~~ia~~d~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~GQ~~d~~ 166 (342)
||||| ||+|++|||+||+|++||++ ++|+.|+++++.++.++++...+.+...++++.++++ +..++.||.+|+.
T Consensus 78 IHDDIp~mD~s~~RRG~pt~h~~~G~~-~AIlaGD~Ll~~A~~~l~~~~~~~~~~~~~~~~l~~~~g~~~~~~GQ~lDl~ 156 (291)
T 3npk_A 78 IHDDLPAMDNADFRRGIPTLHKSYDET-TAILVGDALNTEAFLVLSHAHLKDEIKIKLIKTLAFNAGLNGMVIGQAIDCF 156 (291)
T ss_dssp HHHTSTTTTCCSEETTEECHHHHTCHH-HHHHHHHHHHHHHHHHHHTSSSCHHHHHHHHHHHHHHHSTTTHHHHHHHHHH
T ss_pred HHCCcccccCCCCCCCCCchhhhcCHH-HHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 99999 99999999999999999987 3444444455778888876432333456788888888 7899999999999
Q ss_pred ccccCcccCCCCCHHHHHHHHHcchhhhhhHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCccccCC
Q 019339 167 TTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGK 246 (342)
Q Consensus 167 ~~~~~~~~~~~~~~~~y~~~~~~KTg~l~~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DDlld~~~~~~~~GK 246 (342)
+... .+++++|++|+.+|||+| |+++|++|++++|++++..+.+++||.++|+||||+||++|++++++++||
T Consensus 157 ~~~~------~~~~~~y~~i~~~KTg~L-~~~a~~~ga~laga~~~~~~~l~~~g~~lGlaFQI~DDiLD~~gd~~~~GK 229 (291)
T 3npk_A 157 FEDK------RLSLNELEFLHTHKTARL-IAAALKMGCEICELNNEESNQIYKLGLKLGLIFQINDDIIDVTTSQEQSGK 229 (291)
T ss_dssp TTTS------CCCHHHHHHHHHHHTHHH-HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred ccCC------CCCHHHHHHHHHcccHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChHHHCC
Confidence 8642 579999999999999999 999999999999999998999999999999999999999999999999999
Q ss_pred -cccchhhccchHHHHHHHhhccHHH
Q 019339 247 -VGTDIEDYKCSWLVVKALELCNEEQ 271 (342)
Q Consensus 247 -~~~Dl~~gk~Tlp~l~al~~~~~~~ 271 (342)
.+.| +||+|||++++++.++++.
T Consensus 230 ~~~~d--~gK~T~p~l~~l~~a~~~~ 253 (291)
T 3npk_A 230 PTNND--IHKNSFVNLLGLEQAIKTK 253 (291)
T ss_dssp ----------CCHHHHHCHHHHHHHH
T ss_pred ccchh--cCcchHHHHHHHHHhHHHH
Confidence 6665 9999999999999865433
No 41
>2azj_A Geranylgeranyl pyrophosphate synthetase; hexpps, trans-prenyltransferase; 2.40A {Sulfolobus solfataricus} PDB: 2azk_A
Probab=100.00 E-value=1.1e-53 Score=397.46 Aligned_cols=242 Identities=21% Similarity=0.130 Sum_probs=209.3
Q ss_pred HHHHHhhcccCCCccchHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCcCccccccccc
Q 019339 34 WVDRMLDYNVPGGKLNRGLSVVDSYRLLKEGKELTDDEFFLSSALGWCIEWLQAYFLVLDDIMDGSHTRRGQPCWFRVPK 113 (342)
Q Consensus 34 ~l~~~~~~~~~~GK~~Rp~l~~~~~~~~~~g~~~~~~~~~~a~~lA~a~EllH~asLihDDI~D~~~~RRg~p~~~~~~g 113 (342)
.+.+++.|.+.||||+||.+|+++++++ || +++ .++++|+++|++|+||||||||||+|++|||+||+|.+||
T Consensus 37 ~l~~~~~y~~~gGKrlRp~L~l~~~~~~-g~---~~~---~~~~~A~avEliH~asLIHDDi~D~s~~RRG~pt~h~~~G 109 (289)
T 2azj_A 37 DLVDISSYILKDGKRFRGTLNMFFTVAL-GG---DIK---DSYGGALAIEILHSASLALCDIVDLDATRRGDKAAWVVYG 109 (289)
T ss_dssp THHHHHHHHHSCCCCHHHHHHHHHHHHT-TC---CGG---GGHHHHHHHHHHHHHHHHHHHHHTTCCBSSSSBCHHHHHH
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHh-CC---CHH---HHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCccHHHhcC
Confidence 4788888877799999999999999999 44 232 3578999999999999999999999999999999999999
Q ss_pred chhhHhhhHHHHHHHHHHHH-HcccCCCchHHHHHHHHHHHHHHHhHHHHHhccccccCcccCCCCCHHHHHHHHHcchh
Q 019339 114 VGMIAANDGVLLRNHISRIL-KNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTA 192 (342)
Q Consensus 114 ~~~ia~~d~~~l~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~~d~~~~~~~~~~~~~~~~~~y~~~~~~KTg 192 (342)
++ ++|+.|+++++.++.++ ++.. .++++.+++++..++.||.+|+.+ +++|++|+.+|||
T Consensus 110 ~~-~AIlaGD~Ll~~a~~~l~~~~~------~~~~~~~~~~~~~~~~GQ~~dl~~------------~~~y~~~i~~KTa 170 (289)
T 2azj_A 110 NR-KVIFITNYLIPTALRIIQTSYG------DDALNTSIELWKDTSVGALRDMYD------------NSDYIRTIELKTG 170 (289)
T ss_dssp HH-HHHHHHHHHHHHHHHHHHHHHC------HHHHHHHHHHHHHHHHHHHHTTTT------------TSCHHHHHHHHTH
T ss_pred hH-HHHHHHHHHHHHHHHHHHhcCc------HHHHHHHHHHHHHHHHHHHHHHhh------------HHHHHHHHHcchH
Confidence 87 56666666678889999 7751 258899999999999999999974 3569999999999
Q ss_pred hhhhHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCccccCCcccchhhccchHHHHHHHhhccHHHH
Q 019339 193 YYSFYLPVACALLMAGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVGTDIEDYKCSWLVVKALELCNEEQK 272 (342)
Q Consensus 193 ~l~~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DDlld~~~~~~~~GK~~~Dl~~gk~Tlp~l~al~~~~~~~~ 272 (342)
+| |++||++|++++ ++++..+.+++||.++|+||||+||++|++++ || .|+++||.|||+++ +..+.+.
T Consensus 171 ~L-~~~a~~~ga~la-~~~~~~~~l~~~g~~lG~aFQi~DDilD~~~~----~K--~dl~~gk~Tlp~l~--~~~g~~~- 239 (289)
T 2azj_A 171 SL-FKLSTVLSAYAS-KHYNTKQQMLDVGKYLGIIYQVIDDFVDYKTK----KV--EEIDGSAKQLFKYY--REGKLEE- 239 (289)
T ss_dssp HH-HHHHHHHHHHHT-TCGGGHHHHHHHHHHHHHHHHHHHHHHHHTTS----CT--TTCCTTGGGGHHHH--TTTCHHH-
T ss_pred HH-HHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHHHHHHhhhhhcCC----CC--hhhhcCcccHHHHH--HcCCHHH-
Confidence 99 999999999999 99899999999999999999999999999986 45 58999999999999 3322110
Q ss_pred HHHHHHhCCCChHhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHhhcCCC-hHHHHHHHHHHHHHhhcc
Q 019339 273 KLVHENYGKVDPACVAKVKELYKTLDLEGAFVEYEKESYEKLTKSIEAHPT-KEVQAVLKSFLAKIYKRQ 341 (342)
Q Consensus 273 ~~l~~~~~~~~~~~~~~i~~li~~~g~~~~~~~~~~~~~~~a~~~l~~lp~-~~~~~~L~~l~~~~~~R~ 341 (342)
..+..++.|.++|++.|+.+|. ++.++.|..+++++++|.
T Consensus 240 -----------------------------a~~~~a~~~~~~A~~~L~~lp~~~~~~~~L~~l~~~~~~R~ 280 (289)
T 2azj_A 240 -----------------------------YVRSVYLEYKQKYDELISNIPFQSKYLSEIRSLPEFLANGL 280 (289)
T ss_dssp -----------------------------HHHHHHHHHHHHHHHHHHTSCCCGGGHHHHHTHHHHHHHHH
T ss_pred -----------------------------HHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcc
Confidence 0124788999999999999998 888999999999999984
No 42
>2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase, isoprene biosynthesis, multifunctional enzyme, carotenoid biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A 3kra_A 3krc_A* 3krf_A* 3kro_A* 3krp_A* 3oab_A* 3oac_A*
Probab=100.00 E-value=5.3e-53 Score=394.31 Aligned_cols=247 Identities=20% Similarity=0.250 Sum_probs=203.2
Q ss_pred HHHHHHhhccc-CCCccchHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhh--cCCCCCCcCccccc
Q 019339 33 QWVDRMLDYNV-PGGKLNRGLSVVDSYRLLKEGKELTDDEFFLSSALGWCIEWLQAYFLVLDDI--MDGSHTRRGQPCWF 109 (342)
Q Consensus 33 ~~l~~~~~~~~-~~GK~~Rp~l~~~~~~~~~~g~~~~~~~~~~a~~lA~a~EllH~asLihDDI--~D~~~~RRg~p~~~ 109 (342)
+.+.+++.|.+ .||||+||.+|+++++++ || +++ .++++|+++|+||+|||||||| ||+|++|||+||+|
T Consensus 38 ~~l~~~~~y~~~~gGKrlRp~L~l~~~~~~-g~---~~~---~~~~~A~avEliH~asLiHDDip~mD~s~~RRG~pt~h 110 (293)
T 2j1p_A 38 LKIHEAMRYSLLAGGKRVRPVLCIAACELV-GG---EES---LAMPAACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNH 110 (293)
T ss_dssp HHHHHHHHHHHTSCCCCHHHHHHHHHHHHT-TC---CHH---HHHHHHHHHHHHHHHHHHHHTSTTTTCCSEETTEECHH
T ss_pred HHHHHHHHHHHhCCCCcHHHHHHHHHHHHh-CC---CHH---HHHHHHHHHHHHHHHHHHHCCchhccCCCCCCCCCchh
Confidence 56889999988 899999999999999998 44 232 3678999999999999999998 99999999999999
Q ss_pred ccccch-hhHhhhHHHHHHHHHHHHHcccCC---CchHHHHHHHHHHHH--HHHhHHHHHhccccccCcccCCCCCHHHH
Q 019339 110 RVPKVG-MIAANDGVLLRNHISRILKNHFRD---KPYYVDLLDLFNEVE--FQTASGQMIDLITTIEGEKDLSKYSLPLH 183 (342)
Q Consensus 110 ~~~g~~-~ia~~d~~~l~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~--~~~~~GQ~~d~~~~~~~~~~~~~~~~~~y 183 (342)
++||++ ++++||+++ +.++..+++.... +....+++..++.++ ..++.||.+|+.+..... ..+++++|
T Consensus 111 ~~~G~~~AIlaGD~Ll--~~A~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~GQ~~Dl~~~~~~~---~~~~~~~y 185 (293)
T 2j1p_A 111 KVYGEDVAVLAGDALL--SFAFEHLASATSSEVSPARVVRAVGELAKAIGTEGLVAGQVVDISSEGLDL---NNVGLEHL 185 (293)
T ss_dssp HHHCHHHHHHHHHHHH--HHHHHHHHHHSCTTSCHHHHHHHHHHHHHHHSTTTHHHHHHHTTC---CCH---HHHHHHHH
T ss_pred hhcCHHHHHHHHHHHH--HHHHHHHHHhccccCChHHHHHHHHHHHHHHhHhHHHHHHHHHHHHccCCC---CCCCHHHH
Confidence 999998 555566554 6778888775321 112234444555554 469999999999864210 13578999
Q ss_pred HHHHHcchhhhhhHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCccccCCcccchhhccchHHHHHH
Q 019339 184 RRIVQYKTAYYSFYLPVACALLMAGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVGTDIEDYKCSWLVVKA 263 (342)
Q Consensus 184 ~~~~~~KTg~l~~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DDlld~~~~~~~~GK~~~Dl~~gk~Tlp~l~a 263 (342)
++|+.+|||+| |++||++|++++|++++..+.+++||.++|+||||+||++|+++++ |.|+|++++
T Consensus 186 ~~i~~~KTa~L-~~~a~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DDiLD~~~~~-------------K~T~p~l~g 251 (293)
T 2j1p_A 186 KFIHLHKTAAL-LEASAVLGGIIGGGSDEEIERLRKFARCIGLLFQVVDDILDVTKSS-------------KLTYPKLMG 251 (293)
T ss_dssp HHHHHHHTHHH-HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------------CCCHHHHHH
T ss_pred HHHHHcccHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCc-------------cccHHHHHH
Confidence 99999999999 9999999999999999999999999999999999999999999863 899999983
Q ss_pred HhhccHHHHHHHHHHhCCCChHhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhccC
Q 019339 264 LELCNEEQKKLVHENYGKVDPACVAKVKELYKTLDLEGAFVEYEKESYEKLTKSIEAHPTKEVQAVLKSFLAKIYKRQK 342 (342)
Q Consensus 264 l~~~~~~~~~~l~~~~~~~~~~~~~~i~~li~~~g~~~~~~~~~~~~~~~a~~~l~~lp~~~~~~~L~~l~~~~~~R~~ 342 (342)
++++++.++++.++|++.|+.+|. +.++.|..+++++++|++
T Consensus 252 ------------------------------------le~a~~~a~~~~~~A~~~L~~l~~-~~~~~L~~l~~~~~~R~~ 293 (293)
T 2j1p_A 252 ------------------------------------LEKSREFAEKLNTEARDQLLGFDS-DKVAPLLALANYIANRQN 293 (293)
T ss_dssp ------------------------------------HHHHHHHHHHHHHHHHHHTTTSCT-TTTHHHHHHHHHHHHCCC
T ss_pred ------------------------------------HHHHHHHHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhcC
Confidence 456777889999999999999984 458899999999999975
No 43
>4fp4_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; HET: GER UNL; 2.00A {Pyrobaculum calidifontis}
Probab=100.00 E-value=1e-47 Score=354.67 Aligned_cols=222 Identities=20% Similarity=0.180 Sum_probs=173.9
Q ss_pred CchhHHHHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHhhccc-CCCccchHHHHHHHHHHhhCCCCCChHHHHHHHHHH
Q 019339 1 MSDLKSRFIEVYGVLKQELLNDPAFEFDHDSRQWVDRMLDYNV-PGGKLNRGLSVVDSYRLLKEGKELTDDEFFLSSALG 79 (342)
Q Consensus 1 ~~~~~~~f~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~GK~~Rp~l~~~~~~~~~~g~~~~~~~~~~a~~lA 79 (342)
|+.....+.+....+...|.+..... .++.+.+++.|.+ .|||++||++|+++++++ |+. +.....+..+|
T Consensus 3 ~~~l~~~i~~~l~~ve~~L~~~l~~~----~~~~l~~~~~y~~~~gGKrlRp~Lvll~~~~~-g~~---~~~~~~~~~~A 74 (285)
T 4fp4_A 3 MYSLPPEVLAALERVKARLNKVGEEL----EPISLRKAVRHYIETPGKLLRPLLLLTFTYSI-DRR---SIMDPRILEAA 74 (285)
T ss_dssp CCCCCHHHHHHHHHHHHHHHTTTTTC----SSHHHHHHHHHHHHSCCCCHHHHHHHHHHHHH-CGG---GGGCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhc----CcHHHHHHHHHHHhCCCCcHHHHHHHHHHHHh-CCC---CCChHHHHHHH
Confidence 33344555666666666666421111 2467899999998 999999999999999999 331 11123467899
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCCcCcccccccccchhhHhhhHHHHHHHHHHHHHcccCCCchHHHHHHHHHHHHHHHhH
Q 019339 80 WCIEWLQAYFLVLDDIMDGSHTRRGQPCWFRVPKVGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTAS 159 (342)
Q Consensus 80 ~a~EllH~asLihDDI~D~~~~RRg~p~~~~~~g~~~ia~~d~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (342)
+++|+||+||||||||||+|++|||+||+|++||++ ++|+.|+++++.++..+++.. .++++.+++++..++.
T Consensus 75 ~aiEliH~aSLIHDDImD~s~~RRG~Pt~h~~~G~~-~AIlaGD~Ll~~A~~~l~~~~------~~~~~~ls~~~~~~~~ 147 (285)
T 4fp4_A 75 AIVELLHVVSLLQDDVMDQHDQRRGIKTPRAMYGDG-RAIVASDWLIAESIKMAVNLG------ADVVTYLADVAQRLSV 147 (285)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSBSSSSBCHHHHHCHH-HHHHHHHHHHHHHHHHHHTTC------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCcHHHhcChH-HHHHHHHHHHHHHHHHHHHhh------HHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999987 455555556677888888751 2788999999999999
Q ss_pred HHHHhccccccCcccCCCCCHHHHHHHHHcchhhhhhHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhcC
Q 019339 160 GQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAGENLDKHVEVKDILVQMGIYFQVQDDFLDCFG 239 (342)
Q Consensus 160 GQ~~d~~~~~~~~~~~~~~~~~~y~~~~~~KTg~l~~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DDlld~~~ 239 (342)
||.+|+.+..+ . |+.+|||+| |++||++|++++|++ +..+.+++||.++|+||||+||++|+++
T Consensus 148 GQ~lDl~~~~~---------~-----~i~~KTg~L-f~~a~~lGa~lag~~-~~~~~l~~~G~~lGlAFQI~DDiLD~~~ 211 (285)
T 4fp4_A 148 GQALDLEGERD---------K-----AAEFKTAPL-IEAALVMPLVILGRR-ELIETAKKLGTKLGILYQYSDDYSDENV 211 (285)
T ss_dssp HHHHHHTTCHH---------H-----HHHHHTHHH-HHHHHHHHHHHHTCG-GGHHHHHHHHHHHHHHTTCC--------
T ss_pred hHHHHHhcccc---------c-----hhhcCcHHH-HHHHHHHHHHHcCCh-HHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 99999998532 1 999999999 999999999999998 8889999999999999999999999999
Q ss_pred CccccCC-cccchhhc
Q 019339 240 SPEVIGK-VGTDIEDY 254 (342)
Q Consensus 240 ~~~~~GK-~~~Dl~~g 254 (342)
+++. || .|+||+++
T Consensus 212 d~~~-~k~~g~DI~e~ 226 (285)
T 4fp4_A 212 ERPE-TKSIANEIGRY 226 (285)
T ss_dssp -CHH-HHHHHHHHHHH
T ss_pred Cccc-cCccHHHHHHH
Confidence 8765 56 99999999
No 44
>3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B* 3oab_B* 3oac_B*
Probab=100.00 E-value=4.1e-46 Score=344.27 Aligned_cols=187 Identities=11% Similarity=0.024 Sum_probs=156.3
Q ss_pred HHHHHHhhccc-CCCccchHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhc-CCCCCCcCcccccc
Q 019339 33 QWVDRMLDYNV-PGGKLNRGLSVVDSYRLLKEGKELTDDEFFLSSALGWCIEWLQAYFLVLDDIM-DGSHTRRGQPCWFR 110 (342)
Q Consensus 33 ~~l~~~~~~~~-~~GK~~Rp~l~~~~~~~~~~g~~~~~~~~~~a~~lA~a~EllH~asLihDDI~-D~~~~RRg~p~~~~ 110 (342)
..+.+++.|.+ .||||+||.||+++++++ |+ +++ .++++|+++|+||+||||||||+ |+++.|||+||+|+
T Consensus 26 ~~l~~~~~y~~~~gGKrlRP~L~l~~~~~~-g~---~~~---~~~~~A~aiEliH~aSLIHDDI~~dD~d~RRG~pt~h~ 98 (274)
T 3kra_B 26 ETVFGPMHHLTFAAPATAASTLCLAACELV-GG---DRS---QAMAAAAAIHLVHAAAYVHEHLPLTDGSRPVSKPAIQH 98 (274)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHHHHHT-TC---CGG---GGHHHHHHHHHHHHHHHHHHTCCCSSSSSCCCSSCCCC
T ss_pred HHHHHHHHHHHhCCCCcHHHHHHHHHHHHh-CC---CHH---HHHHHHHHHHHHHHHHHHHcCCcccCCccCCCCCCchh
Confidence 45889999988 999999999999999999 44 232 36789999999999999999998 66668999999999
Q ss_pred cccchhhHhhhHHHHHHHHHHHHHcccCCC--chHHHHHHHH---HHHH--HHHhHHHHHhccccccCcccCCCCCHHHH
Q 019339 111 VPKVGMIAANDGVLLRNHISRILKNHFRDK--PYYVDLLDLF---NEVE--FQTASGQMIDLITTIEGEKDLSKYSLPLH 183 (342)
Q Consensus 111 ~~g~~~ia~~d~~~l~~~~~~~l~~~~~~~--~~~~~~~~~~---~~~~--~~~~~GQ~~d~~~~~~~~~~~~~~~~~~y 183 (342)
+||++ ++|+.|+++++.++.++++...+. ....++++.+ ++++ ..++.||.+|+.|..+ .+++++|
T Consensus 99 ~~G~~-~AIlaGD~Ll~~Af~~l~~~~~~~~~~~~~~~~~~~~~l~~a~G~~~~~~GQ~lDl~~~~~------~~t~~~y 171 (274)
T 3kra_B 99 KYGPN-VELLTGDGIVPFGFELLAGSVDPARTDDPDRILRVIIEISRAGGPEGMISGLHREEEIVDG------NTSLDFI 171 (274)
T ss_dssp SSCHH-HHHHHHHHHHHHHHHHHHHTCCTTCTTHHHHHHHHHHHHHHHTSTTTHHHHHHHHTTCCTT------SSCHHHH
T ss_pred hcChH-HHHHHHHHHHHHHHHHHHhcCCccccccHHHHHHHHHHHHHHHhHHHHHHhHHHHHhccCC------CCCHHHH
Confidence 99987 456666666678889998764321 1223444444 4443 5689999999998753 4699999
Q ss_pred HHHHHcchhhhhhHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhh
Q 019339 184 RRIVQYKTAYYSFYLPVACALLMAGENLDKHVEVKDILVQMGIYFQVQDDF 234 (342)
Q Consensus 184 ~~~~~~KTg~l~~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DDl 234 (342)
++|+.+|||+| |++||++|++++|++++.++.+++||.++|++|||+||.
T Consensus 172 ~~~i~~KTa~L-~~~a~~lGailaga~~~~~~~l~~~G~~lG~aFQI~DD~ 221 (274)
T 3kra_B 172 EYVCKKKYGEM-HACGAACGAILGGAAEEEIQKLRNFGLYQGTLRGMMEMK 221 (274)
T ss_dssp HHHHHHHTHHH-HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999 999999999999999999999999999999999999997
No 45
>3qkc_B Geranyl diphosphate synthase small subunit; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.20A {Antirrhinum majus}
Probab=100.00 E-value=5.9e-45 Score=336.54 Aligned_cols=215 Identities=12% Similarity=0.041 Sum_probs=166.1
Q ss_pred CchhHHHHHHHHHHHHHHHhC--CCCCCCCcchHHHHHHHhhccc-CCCccchHHHHHHHHHHhhCCCCCChHHHHHHHH
Q 019339 1 MSDLKSRFIEVYGVLKQELLN--DPAFEFDHDSRQWVDRMLDYNV-PGGKLNRGLSVVDSYRLLKEGKELTDDEFFLSSA 77 (342)
Q Consensus 1 ~~~~~~~f~~~~~~l~~~l~~--~~~~~~~~~~~~~l~~~~~~~~-~~GK~~Rp~l~~~~~~~~~~g~~~~~~~~~~a~~ 77 (342)
||+. ++.++|+.++.+++. ...+.. ..+..+.+++.|.+ .||||+||++|+++++++ |+ +++ .+++
T Consensus 1 ~~~~--~~~~~~~~~~~~i~~~L~~~~~~--~~p~~l~~~~~y~~~~gGKrlRP~L~l~~~~~~-g~---~~~---~~~~ 69 (273)
T 3qkc_B 1 MSLT--RTQTYRATIESDIESYLKKAIPI--RAPESVFEPMHHLTFAAPRTSASALCVAACELV-GG---DRS---DAMA 69 (273)
T ss_dssp --CC--HHHHHHHHHHHHHHHHHHHHSCC--CCSSTTHHHHHHHHHHSCCCHHHHHHHHHHHHT-TC---CGG---GTHH
T ss_pred CChh--hHHHHHHHHHHHHHHHHHHhccc--CCcHHHHHHHHHHHhCCCCcHHHHHHHHHHHHh-CC---CHH---HHHH
Confidence 4444 467888888887776 222221 12234788999988 999999999999999999 44 232 3678
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCCCCcCcccccccccchhhHhhhHHHHHHHHHHHHHcccCCC-chHHHHHHHH---HHH
Q 019339 78 LGWCIEWLQAYFLVLDDIMDGSHTRRGQPCWFRVPKVGMIAANDGVLLRNHISRILKNHFRDK-PYYVDLLDLF---NEV 153 (342)
Q Consensus 78 lA~a~EllH~asLihDDI~D~~~~RRg~p~~~~~~g~~~ia~~d~~~l~~~~~~~l~~~~~~~-~~~~~~~~~~---~~~ 153 (342)
+|+++|+||+||||||||+|+|. |||+||+|++||++ +||+.|+++++.++.++++...+. ....++++.+ +.+
T Consensus 70 ~A~aiEliH~aSLIHDDI~D~d~-RRG~pt~h~~~G~~-~AIlaGD~Ll~~Af~~l~~~~~~~~~~~~~~~~~~~~l~~a 147 (273)
T 3qkc_B 70 AAAAVHLMHVAAYTHENLPLTDG-PMSKSEIQHKFDPN-IELLTGDGIIPFGLELMARSMDPTRNNPDRILRAIIELTRV 147 (273)
T ss_dssp HHHHHHHHHHHHHHHHSCCBTTB-CSSSSCCCCSSCHH-HHHHHHHHHHHHHHHHHHHHSCSSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCcccCcc-CCCCCCchhhcCHH-HHHHHHHHHHHHHHHHHHHcCCcccccHHHHHHHHHHHHHH
Confidence 99999999999999999999999 99999999999987 455555556678888988764321 1123444444 444
Q ss_pred H--HHHhHHHHHhccccccCcccCCCCCHHHHHHHHHcchhhhhhHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Q 019339 154 E--FQTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAGENLDKHVEVKDILVQMGIYFQVQ 231 (342)
Q Consensus 154 ~--~~~~~GQ~~d~~~~~~~~~~~~~~~~~~y~~~~~~KTg~l~~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~ 231 (342)
+ ..++.||.+|+.+.. ..+++.|..|+++|||+| |++||++|++++|++++.++.+++||.++|+||||+
T Consensus 148 ~g~~~~~~GQ~lDl~~~~-------~~~~eyl~~I~~~KTa~L-~~~a~~lGailaga~~~~~~~l~~~G~~lGlaFQI~ 219 (273)
T 3qkc_B 148 MGSEGIVEGQYHELGLNQ-------LNDLELIEYVCKKKEGTL-HACGAACGAILGGCDEDKIEKLRRFGLYVGTVQGLL 219 (273)
T ss_dssp HTTTTHHHHHHHHTTCCS-------SCCHHHHHHHHHHTHHHH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hchhHHHHHHHHHHhcCC-------CCCHHHHHHHHHhhHHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3 568999999999832 235544445669999999 999999999999999999999999999999999999
Q ss_pred hhhhh
Q 019339 232 DDFLD 236 (342)
Q Consensus 232 DDlld 236 (342)
||+.+
T Consensus 220 DD~~~ 224 (273)
T 3qkc_B 220 GKNRS 224 (273)
T ss_dssp TTCCS
T ss_pred HHhhh
Confidence 99973
No 46
>3vj8_A Squalene synthase; farnesyl-diphosphate farnesyltransferase, head-TO-head synth cholesterol biosynthesis, oxidoreductase, transferase; 1.52A {Homo sapiens} PDB: 3vj9_A 3vja_A 3vjb_A 3vjc_A* 3v66_A* 3lee_A* 3q2z_A* 3q30_A* 3asx_A* 1ezf_A*
Probab=94.26 E-value=0.75 Score=42.99 Aligned_cols=144 Identities=8% Similarity=-0.046 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHhHHHHHhccccccCcccCCCCCHHHHHHHHHcchhhhhhHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Q 019339 147 LDLFNEVEFQTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAGENLDKHVEVKDILVQMGI 226 (342)
Q Consensus 147 ~~~~~~~~~~~~~GQ~~d~~~~~~~~~~~~~~~~~~y~~~~~~KTg~l~~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~ 226 (342)
.+.+.+....+..|-..|+... -.|++++..=..+=-|.. ..+.+.+-..-...++ ........+.++|.
T Consensus 113 ~~~i~~~~~~m~~gm~~dl~~~--------~~t~~~L~~Yc~~vAg~V-G~l~~~l~~~~~~~~~-~~~~~~~~A~~lG~ 182 (343)
T 3vj8_A 113 QTVIADICRRMGIGMAEFLDKH--------VTSEQEWDKYCHYVAGLV-GIGLSRLFSASEFEDP-LVGEDTERANSMGL 182 (343)
T ss_dssp HHHHHHHHHHHHHHHHHGGGCC--------CCSHHHHHHHHHHHTHHH-HHHHHHHHHHHTSSCH-HHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCC--------CCCHHHHHHHHHhCcHHH-HHHHHHHhCCCCCccc-hhhhHHHHHHHHHH
Confidence 3445555667788888888621 247777776666666655 3344444322221222 23456788999999
Q ss_pred HHHHHhhhhhhcCCccccCCcccchhhccchHHHHHHHhhccHHHHHHHHHHhCCCChHhHHHHHHHHHHcChHHHHHHH
Q 019339 227 YFQVQDDFLDCFGSPEVIGKVGTDIEDYKCSWLVVKALELCNEEQKKLVHENYGKVDPACVAKVKELYKTLDLEGAFVEY 306 (342)
Q Consensus 227 afQi~DDlld~~~~~~~~GK~~~Dl~~gk~Tlp~l~al~~~~~~~~~~l~~~~~~~~~~~~~~i~~li~~~g~~~~~~~~ 306 (342)
|+|+.|=+.|+- .|+..|++-||.=..-+..-.. ..++..... ..++.++ ......
T Consensus 183 AlQltNilRDv~----------eD~~~gR~YlP~e~l~~~g~~~-----~dl~~~~~~---~~~~~~l------~~l~~~ 238 (343)
T 3vj8_A 183 FLQKTNIIRDYL----------EDQQGGREFWPQEVWSRYVKKL-----GDFAKPENI---DLAVQCL------NELITN 238 (343)
T ss_dssp HHHHHHHHHTHH----------HHHHTTCCCSCHHHHTTTCSSG-----GGGGSGGGH---HHHHHHH------HHHHHH
T ss_pred HHHHHHHHHHhH----------HHHhCCCeeCCHHHHHHcCCCH-----HHHhcccCC---HHHHHHH------HHHHHH
Confidence 999999888883 5888899988875444432110 112211111 2223332 223346
Q ss_pred HHHHHHHHHHHhhcCCCh
Q 019339 307 EKESYEKLTKSIEAHPTK 324 (342)
Q Consensus 307 ~~~~~~~a~~~l~~lp~~ 324 (342)
++.|..+|...+..+|+.
T Consensus 239 A~~~~~~a~~~~~~L~~~ 256 (343)
T 3vj8_A 239 ALHHIPDVITYLSRLRNQ 256 (343)
T ss_dssp HHTTHHHHHHHHHTCCCH
T ss_pred HHHHHHHHHHHHHhCCcc
Confidence 777888888888888875
No 47
>4hd1_A Squalene synthase HPNC; MCSG, structural genomics, PSI-biology, midwest center for S genomics, transferase; 2.40A {Alicyclobacillus acidocaldarius subsp}
Probab=94.12 E-value=0.95 Score=41.23 Aligned_cols=131 Identities=8% Similarity=-0.052 Sum_probs=79.8
Q ss_pred HHHHhHHHHHhccccccCcccCCCCCHHHHHHHHHcchhhhhhHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhh
Q 019339 154 EFQTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAGENLDKHVEVKDILVQMGIYFQVQDD 233 (342)
Q Consensus 154 ~~~~~~GQ~~d~~~~~~~~~~~~~~~~~~y~~~~~~KTg~l~~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD 233 (342)
...+..|..+|+.... -.|++++..=.++=.|.. . .-+..+++..+++ ...++.++|+|+|+.|=
T Consensus 106 ~~~li~g~~~Dl~~~~-------~~t~~dL~~Y~~~vAg~V-G---~m~~~i~g~~~~~----~~~~A~~lG~AlQltNi 170 (294)
T 4hd1_A 106 FLRLIEANRRDQRKHT-------YDTWEDLRDYCRYSADPV-G---RLVLGIFGCLDDE----RARLSDATCTALQVANH 170 (294)
T ss_dssp HHHHHHHHHHHHHCSB-------CCSHHHHHHHHHHHTHHH-H---HHHHHHTTCCSHH----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCC-------CCCHHHHHHHHHhccchH-H---HHHHHHhCCCCHH----HHHHHHHHHHHHHHHHH
Confidence 3567889999987643 247777666555444443 2 2222334444433 35678999999999999
Q ss_pred hhhhcCCccccCCcccchhhccchHHHHHHHhhc-cHHHHHHHHHHhCCCChHhHHHHHHHHHHcChHHHHHHHHHHHHH
Q 019339 234 FLDCFGSPEVIGKVGTDIEDYKCSWLVVKALELC-NEEQKKLVHENYGKVDPACVAKVKELYKTLDLEGAFVEYEKESYE 312 (342)
Q Consensus 234 lld~~~~~~~~GK~~~Dl~~gk~Tlp~l~al~~~-~~~~~~~l~~~~~~~~~~~~~~i~~li~~~g~~~~~~~~~~~~~~ 312 (342)
+.|+- .|+..|++-+|.-..-+.. +++ .+ ........ ++.++.. ....++.+.+
T Consensus 171 lRDv~----------eD~~~gR~YlP~~~l~~~gv~~~---dl---~~~~~~~~---~~~~~~~------~~~~A~~~~~ 225 (294)
T 4hd1_A 171 MQDID----------RDLALGRIYVPRADLEQFGATLD---DI---RARRATDG---VRRCIAL------EVDRAQALFD 225 (294)
T ss_dssp HHTHH----------HHHHTTCBCSCHHHHHTTTCCHH---HH---HTTCCCHH---HHHHHHH------HHHHHHHHHH
T ss_pred HHhch----------hhhccCceeCCHHHHHHcCCCHH---HH---hcCCCCHH---HHHHHHH------HHHHHHHHHH
Confidence 99884 5888999999976655542 221 22 22222222 2333222 2335677888
Q ss_pred HHHHHhhcCCCh
Q 019339 313 KLTKSIEAHPTK 324 (342)
Q Consensus 313 ~a~~~l~~lp~~ 324 (342)
+|...+..+|..
T Consensus 226 ~a~~~~~~lp~~ 237 (294)
T 4hd1_A 226 EGRRLESLVPPR 237 (294)
T ss_dssp HHGGGGGSSCHH
T ss_pred HHHHHHHhCCHH
Confidence 888888888753
No 48
>3acx_A Dehydrosqualene synthase; CRTM, carotenoid biosynthesis, staphyloxanthin biosynthesis, transferase, head-TO-head condensation, inhibitor; HET: 673; 1.31A {Staphylococcus aureus} PDB: 2zcp_A* 2zcq_A* 2zcr_A* 2zcs_A* 2zy1_A* 3acw_A* 2zco_A* 3acy_A* 3npr_A* 3nri_A* 3tfn_A* 3tfp_A* 3tfv_A* 3adz_A* 3lgz_B* 3vjd_A* 3vje_A* 3ae0_A* 4ea2_A* 4e9u_A* ...
Probab=93.96 E-value=1.4 Score=40.01 Aligned_cols=133 Identities=9% Similarity=0.042 Sum_probs=80.0
Q ss_pred HHHHhHHHHHhccccccCcccCCCCCHHHHHHHHHcchhhhhhHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhh
Q 019339 154 EFQTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAGENLDKHVEVKDILVQMGIYFQVQDD 233 (342)
Q Consensus 154 ~~~~~~GQ~~d~~~~~~~~~~~~~~~~~~y~~~~~~KTg~l~~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD 233 (342)
...+..|...|+.... -.|++++..=.++=-|.. ..+.+. +++..+. ......+.++|.|+|+.|=
T Consensus 110 ~~~li~g~~~Dl~~~~-------~~t~~dL~~Yc~~vAg~V-G~l~~~---l~g~~~~---~~~~~~A~~lG~AlQltNi 175 (293)
T 3acx_A 110 FYNLIDTVYKDQHFTM-------FETDAELFGYCYGVAGTV-GEVLTP---ILSDHET---HQTYDVARRLGESLQLINI 175 (293)
T ss_dssp HHHHHHHHHHHTTCCC-------CSSHHHHHHHHHHHTHHH-HHHHHH---HHCSSCC---HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCC-------CCCHHHHHHHHHHhhHHH-HHHHHH---HhCCCCc---HHHHHHHHHHHHHHHHHHH
Confidence 3567788888887532 136777776666655554 223332 2333331 2356799999999999998
Q ss_pred hhhhcCCccccCCcccchhhccchHHHHHHHhhccHHHHHHHHHHhCCCChHhHHHHHHHHHHcChHHHHHHHHHHHHHH
Q 019339 234 FLDCFGSPEVIGKVGTDIEDYKCSWLVVKALELCNEEQKKLVHENYGKVDPACVAKVKELYKTLDLEGAFVEYEKESYEK 313 (342)
Q Consensus 234 lld~~~~~~~~GK~~~Dl~~gk~Tlp~l~al~~~~~~~~~~l~~~~~~~~~~~~~~i~~li~~~g~~~~~~~~~~~~~~~ 313 (342)
+.|+- .|...|++-||.=..-+..-+ .+.|.+ +..++. ++.++. .....++.|..+
T Consensus 176 lRDv~----------eD~~~gR~YLP~d~l~~~gv~--~e~l~~--~~~~~~----~~~~~~------~l~~~A~~~~~~ 231 (293)
T 3acx_A 176 LRDVG----------EDFENERIYFSKQRLKQYEVD--IAEVYQ--NGVNNH----YIDLWE------YYAAIAEKDFRD 231 (293)
T ss_dssp HHCHH----------HHHHTTCCCSCHHHHHHHTCC--HHHHHH--HCCCHH----HHHHHH------HHHHHHHHHHHH
T ss_pred HHHHH----------HHHhCCcEEeCHHHHHHcCCC--HHHhcc--cCCCHH----HHHHHH------HHHHHHHHHHHH
Confidence 88873 588899999998555444321 112222 122221 222222 223457788888
Q ss_pred HHHHhhcCCCh
Q 019339 314 LTKSIEAHPTK 324 (342)
Q Consensus 314 a~~~l~~lp~~ 324 (342)
|...+..+|..
T Consensus 232 a~~~~~~lp~~ 242 (293)
T 3acx_A 232 VMDQIKVFSIE 242 (293)
T ss_dssp HHHTGGGSCTT
T ss_pred HHHhHHhCCHH
Confidence 88888888864
No 49
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A*
Probab=85.73 E-value=21 Score=33.30 Aligned_cols=105 Identities=4% Similarity=-0.180 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHhHHHHHhccccccCcccCCCCCHHHHHHHHHcchhhhhhHHHHHHHHH-Hc-CCCHHHH--HHHHHH
Q 019339 145 DLLDLFNEVEFQTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALL-MA-GENLDKH--VEVKDI 220 (342)
Q Consensus 145 ~~~~~~~~~~~~~~~GQ~~d~~~~~~~~~~~~~~~~~~y~~~~~~KTg~l~~~~~~~~ga~-la-g~~~~~~--~~l~~~ 220 (342)
...+.+.+....++.+-..+..|...+. .++.++|+++-..-+|.. . .+.+... ++ ..+++.. ..+.++
T Consensus 177 ~~~~r~~~~~~~~~~a~l~Ea~w~~~g~----vPs~eEYl~~r~~s~g~~-~--~~~l~~~~~g~~l~~~~~~~p~~~~l 249 (382)
T 3kb9_A 177 TWNARFARHFHTVIEAYDREFHNRTRGI----VPGVEEYLELRRLTFAHW-I--WTDLLEPSSGCELPDAVRKHPAYRRA 249 (382)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTC----CCCHHHHHHHHHHHTTHH-H--HHHHHHHHHTCCCCHHHHTSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCC----CCCHHHHHHHHhhhcCHH-H--HHHHHHHHcCCCCCHHHHhChHHHHH
Confidence 4456677777888888888888876553 579999999966666643 2 1222222 22 2244433 256777
Q ss_pred HHHHHHHHHHHhhhhhhcCCccccCCcccchhhc-cchHHHHHHHhh
Q 019339 221 LVQMGIYFQVQDDFLDCFGSPEVIGKVGTDIEDY-KCSWLVVKALEL 266 (342)
Q Consensus 221 g~~lG~afQi~DDlld~~~~~~~~GK~~~Dl~~g-k~Tlp~l~al~~ 266 (342)
-...+...-+.||+..|..+. .+| ..++..++.-+.
T Consensus 250 ~~~~~~i~rL~NDi~S~~kE~----------~~G~~~N~V~~~m~~~ 286 (382)
T 3kb9_A 250 ALLSQEFAAWYNDLCSLPKEI----------AGDEVHNLGISLITHH 286 (382)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----------HTTCCCSHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHH----------hcCCcccHHHHHHHcC
Confidence 888999999999999986322 223 236666665544
No 50
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A*
Probab=80.07 E-value=43 Score=32.01 Aligned_cols=105 Identities=10% Similarity=-0.009 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHhHHHHHhccccccCcccCCCCCHHHHHHHHHcchhhhhhHHHHHHHHHHc-CCCHHHHH--HHHHHHH
Q 019339 146 LLDLFNEVEFQTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMA-GENLDKHV--EVKDILV 222 (342)
Q Consensus 146 ~~~~~~~~~~~~~~GQ~~d~~~~~~~~~~~~~~~~~~y~~~~~~KTg~l~~~~~~~~ga~la-g~~~~~~~--~l~~~g~ 222 (342)
..+.+.+.....+.+-..+..|...+. .+|.++|+++-. .||.. ..+.+ +....+ ..+++..+ .+.++-.
T Consensus 256 q~~r~~~~~~~~~~a~l~EA~W~~~g~----vPsleEYl~~R~-~sg~~-p~~~l-~e~~~g~~lp~~v~~~p~~~~L~~ 328 (433)
T 3v1v_A 256 QSDRYRHDMARLHLGYLAEGAWAQTGH----VPEVWEYLAMRQ-FNNFR-PCPTI-TDTVGGYELPADLHARPDMQRVIA 328 (433)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTC----CCCHHHHHHHHH-HSSST-TTGGG-HHHHHTCCCCHHHHTSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCC----CCCHHHHHHHHH-HHhHH-HHHHH-HHHHcCCCCCHHHHhCchHHHHHH
Confidence 345556666777788888888866543 579999999744 55543 11111 121122 22444433 5677888
Q ss_pred HHHHHHHHHhhhhhhcCCccccCCcccchhhcc-chHHHHHHHhh
Q 019339 223 QMGIYFQVQDDFLDCFGSPEVIGKVGTDIEDYK-CSWLVVKALEL 266 (342)
Q Consensus 223 ~lG~afQi~DDlld~~~~~~~~GK~~~Dl~~gk-~Tlp~l~al~~ 266 (342)
..+...-+.||+..|..+.+ +.|. .++..++.-+.
T Consensus 329 ~~~~i~rL~NDI~Sy~kE~~---------~gg~~~N~V~~~mke~ 364 (433)
T 3v1v_A 329 LAGNATTIVNDLYSYTKELN---------SPGRHLNLPVVIAERE 364 (433)
T ss_dssp HHHHHHHHHHHHHSHHHHTT---------SSSCCCCHHHHHHHHH
T ss_pred HHHHHHHHhchHHHHHHHHh---------cCCCCCcHHHHHHHhc
Confidence 88999999999999964321 1133 36666666554
No 51
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A
Probab=74.20 E-value=50 Score=29.77 Aligned_cols=105 Identities=7% Similarity=-0.178 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHhHHHHHhccccccCcccCCCC-CHHHHHHHHHcchhhhhhHHHHHHHHHHcC--CCHHHHH--HHHH
Q 019339 145 DLLDLFNEVEFQTASGQMIDLITTIEGEKDLSKY-SLPLHRRIVQYKTAYYSFYLPVACALLMAG--ENLDKHV--EVKD 219 (342)
Q Consensus 145 ~~~~~~~~~~~~~~~GQ~~d~~~~~~~~~~~~~~-~~~~y~~~~~~KTg~l~~~~~~~~ga~lag--~~~~~~~--~l~~ 219 (342)
.....+.+.....+.+-..+..|...+. .+ |.++|+++-..-.|.. . .+.+.....| .+++..+ .+.+
T Consensus 134 ~~~~~~~~~~~~~~~~~~~Ea~~~~~~~----~P~s~eEYl~~r~~s~g~~-~--~~~~~~~~~g~~l~~~~~~~p~~~~ 206 (337)
T 1ps1_A 134 AWCARSARHWRNYFDGYVDEAESRFWNA----PCDSAAQYLAMRRHTIGVQ-P--TVDLAERAGRFEVPHRVFDSAVMSA 206 (337)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTC-----------CHHHHHHHHHHHTCHH-H--HHHHHHHHHTCCCCHHHHTSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCC----CCCCHHHHHHHcccccchh-h--HHHHHHHHcCCCCCHHHHhChHHHH
Confidence 4456677777888888888888876543 58 9999998766655543 2 2222222222 2443332 5667
Q ss_pred HHHHHHHHHHHHhhhhhhcCCccccCCcccchhhc-cchHHHHHHHhh
Q 019339 220 ILVQMGIYFQVQDDFLDCFGSPEVIGKVGTDIEDY-KCSWLVVKALEL 266 (342)
Q Consensus 220 ~g~~lG~afQi~DDlld~~~~~~~~GK~~~Dl~~g-k~Tlp~l~al~~ 266 (342)
+-...+...-+.||+..|..+. .+| ..+...++.-+.
T Consensus 207 l~~~~~~i~rL~NDl~S~~kE~----------~~G~~~n~V~~~m~~~ 244 (337)
T 1ps1_A 207 MLQIAVDVNLLLNDIASLEKEE----------ARGEQNNMVMILRREH 244 (337)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHH----------HTTCCCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHH----------hcCCcchHHHHHHHHc
Confidence 8888899999999999996322 222 346666666555
No 52
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A*
Probab=58.94 E-value=1.4e+02 Score=29.37 Aligned_cols=104 Identities=13% Similarity=0.029 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHHhHHHHHhccccccCcccCCCCCHHHHHHHHHcchhhhhhHHHHHHHHHHc-C--CCHHHHHHH---H
Q 019339 145 DLLDLFNEVEFQTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMA-G--ENLDKHVEV---K 218 (342)
Q Consensus 145 ~~~~~~~~~~~~~~~GQ~~d~~~~~~~~~~~~~~~~~~y~~~~~~KTg~l~~~~~~~~ga~la-g--~~~~~~~~l---~ 218 (342)
..+..+.+....++.+-..+..|..++. .||.++|+++...-+|.. ++.+.+.++ | .+++..+.+ .
T Consensus 366 ~~~~ylk~~w~~l~~ayl~EAkW~~~gy----vPT~EEYl~na~vSsg~~----~l~~~~~~~mg~~lt~e~~e~~~~~p 437 (554)
T 3g4d_A 366 YRVEYAKNAMIRLAQSYLVEAKWTLQNY----KPSFEEFKANALPTCGYA----MLAITSFVGMGDIVTPETFKWAASDP 437 (554)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTC----CCCHHHHHHHHGGGSCHH----HHHHHHHHTSCTTSCHHHHHHHHTCC
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhcCC----CCCHHHHHhccceeehHH----HHHHHHHHhcCCCCCHHHHHhccccH
Confidence 3556666777788889888889876654 589999999877767653 222222222 3 355555543 4
Q ss_pred HHHHHHHHHHHHHhhhhhhcCCccccCCcccchhhccc-hHHHHHHHhh
Q 019339 219 DILVQMGIYFQVQDDFLDCFGSPEVIGKVGTDIEDYKC-SWLVVKALEL 266 (342)
Q Consensus 219 ~~g~~lG~afQi~DDlld~~~~~~~~GK~~~Dl~~gk~-Tlp~l~al~~ 266 (342)
++-...+...-+.||+..+-.+. .+|.. +...+|.-+.
T Consensus 438 ~i~~~~~~I~RL~NDI~S~k~E~----------~rG~van~V~cYMke~ 476 (554)
T 3g4d_A 438 KIIQASTIICRFMDDVAEHKFKH----------RREDDCSAIECYMEEY 476 (554)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC----------------CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccchhhhhh----------ccCCccHHHHHHHHhc
Confidence 77888999999999999986432 22333 6666677655
No 53
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A*
Probab=56.06 E-value=1.6e+02 Score=29.03 Aligned_cols=104 Identities=6% Similarity=-0.053 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHhHHHHHhccccccCcccCCCCCHHHHHHHHHcchhhhhhHHHHHHHHHHcC-CCHHHHHHH---HHHHH
Q 019339 147 LDLFNEVEFQTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAG-ENLDKHVEV---KDILV 222 (342)
Q Consensus 147 ~~~~~~~~~~~~~GQ~~d~~~~~~~~~~~~~~~~~~y~~~~~~KTg~l~~~~~~~~ga~lag-~~~~~~~~l---~~~g~ 222 (342)
+..+.++...++.+-..+..|..++. .||.++|+++...-+|.. . +.+.+=..++. .+++..+-+ -++-.
T Consensus 366 ~~~l~~~w~~l~~ayl~EAkW~~~gy----vPT~EEYl~na~vSsg~~-~-l~~~~~~~mg~~lt~e~~e~~~~~p~i~~ 439 (555)
T 3n0f_A 366 LPYLTKAWADLCNAFLQEAKWLYNKS----TPTFDDYFGNAWKSSSGP-L-QLIFAYFAVVQNIKKEEIENLQKYHDIIS 439 (555)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTC----CCCHHHHHHHHHHHTSHH-H-HHHHHHHHHCSSCCHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCC----CCCHHHHHHhcccchhHH-H-HHHHHHHhcCCCCCHHHHHhcccchHHHH
Confidence 34455556777888888888876553 589999999987777753 2 11111111232 355554433 46778
Q ss_pred HHHHHHHHHhhhhhhcCCccccCCcccchhhccc-hHHHHHHHhh
Q 019339 223 QMGIYFQVQDDFLDCFGSPEVIGKVGTDIEDYKC-SWLVVKALEL 266 (342)
Q Consensus 223 ~lG~afQi~DDlld~~~~~~~~GK~~~Dl~~gk~-Tlp~l~al~~ 266 (342)
..+...-+.||+..+-.+ ..+|.. +...+|.-+.
T Consensus 440 ~~~~i~RL~NDi~S~~~E----------~~rG~vas~V~cYMke~ 474 (555)
T 3n0f_A 440 RPSHIFRLCNDLASASAE----------IARGETANSVSCYMRTK 474 (555)
T ss_dssp HHHHHHHHHHHHHHHHHH----------HTTTCCCSHHHHHHHHH
T ss_pred HHHHHHHHhccchhhhhh----------hhcCCcchHHHHHHHHc
Confidence 889999999999998632 123333 6666777665
No 54
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A*
Probab=47.42 E-value=1.6e+02 Score=29.07 Aligned_cols=103 Identities=14% Similarity=-0.017 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHhHHHHHhccccccCcccCCCCCHHHHHHHHHcchhhhhhHHHHHHHHHHc-C-CCHHHHHH---HHHH
Q 019339 146 LLDLFNEVEFQTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMA-G-ENLDKHVE---VKDI 220 (342)
Q Consensus 146 ~~~~~~~~~~~~~~GQ~~d~~~~~~~~~~~~~~~~~~y~~~~~~KTg~l~~~~~~~~ga~la-g-~~~~~~~~---l~~~ 220 (342)
.+..+.+....++.+-..+..|..++. .||.++|++...--+|.. . +++ .+.++ . .+++..+- .-++
T Consensus 363 ~~~ylk~~w~~l~~ayl~EAkW~~~gy----vPT~EEYl~na~vSsg~~-~-l~~--~~f~g~~~lt~e~~e~~~~~p~i 434 (550)
T 3m00_A 363 IVCHAIERMKEIVRNYNVESTWFIEGY----TPPVSEYLSNALATTTYY-L-LAT--TSYLGMKSATEQDFEWLSKNPKI 434 (550)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHHHTC----CCCHHHHHHHHTGGGSHH-H-HHH--HHHHTCTTCCHHHHHHHHTCCHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhcCC----CCCHHHHHHhccccchHH-H-HHH--HHHHcCCCCcHHHHHhhcccHHH
Confidence 455566666778888888888876654 589999999987777753 2 221 11333 2 45554443 3467
Q ss_pred HHHHHHHHHHHhhhhhhcCCccccCCcccchhhccc-hHHHHHHHhh
Q 019339 221 LVQMGIYFQVQDDFLDCFGSPEVIGKVGTDIEDYKC-SWLVVKALEL 266 (342)
Q Consensus 221 g~~lG~afQi~DDlld~~~~~~~~GK~~~Dl~~gk~-Tlp~l~al~~ 266 (342)
-...+...-+.||+..+..+ ..+|.. +..-+|.-+.
T Consensus 435 ~~~~~~I~RL~NDI~S~k~E----------~~rG~vas~V~cYMke~ 471 (550)
T 3m00_A 435 LEASVIICRVIDDTATYEVE----------KSRGQIATGIECCMRDY 471 (550)
T ss_dssp HHHHHHHHHHHHHHHSHHHH----------HHTTCTTSHHHHHHHHH
T ss_pred HHHHhhhheeeccchhHHHH----------HhcCCcccHHHHHHHhc
Confidence 78889999999999998532 233444 6666666655
No 55
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A*
Probab=45.31 E-value=1.6e+02 Score=26.00 Aligned_cols=60 Identities=12% Similarity=-0.015 Sum_probs=43.7
Q ss_pred CCCHHHHHHHHHcchhhhhhHHHHHHHHH-Hc-CCCHHHHHHHHHHHHHHHHHHHHHhhhhhhcC
Q 019339 177 KYSLPLHRRIVQYKTAYYSFYLPVACALL-MA-GENLDKHVEVKDILVQMGIYFQVQDDFLDCFG 239 (342)
Q Consensus 177 ~~~~~~y~~~~~~KTg~l~~~~~~~~ga~-la-g~~~~~~~~l~~~g~~lG~afQi~DDlld~~~ 239 (342)
.++.++|+++-..-+|.. . .+.+... ++ ..+++..+.+.++-...+...-+.||+..|..
T Consensus 165 ~Ps~eeYl~~r~~s~g~~-~--~~~~~~~~~g~~l~~e~~~~~~~l~~~~~~~~~L~NDl~S~~k 226 (320)
T 3bny_A 165 PMGLGGYLEYRERDVGKE-L--LAALMRFSMGLKLSPSELQRVREIDANCSKHLSVVNDIYSYEK 226 (320)
T ss_dssp CCCHHHHHHHHHTCHHHH-H--HHHHHHHHHTCCCCHHHHHHTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhhhcccHH-H--HHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHhcccchhHH
Confidence 579999999887777754 2 2222222 22 23667777888899999999999999999964
No 56
>3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron}
Probab=43.84 E-value=34 Score=31.41 Aligned_cols=52 Identities=13% Similarity=0.003 Sum_probs=29.6
Q ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCccccCCcccchhhccchHHHHHHHh
Q 019339 203 ALLMAGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVGTDIEDYKCSWLVVKALE 265 (342)
Q Consensus 203 ga~lag~~~~~~~~l~~~g~~lG~afQi~DDlld~~~~~~~~GK~~~Dl~~gk~Tlp~l~al~ 265 (342)
++.+.|.+.+....+...-+-+=.++=|-||+.| .+|+|.|++|+-..+.-.
T Consensus 58 ~~~~~g~~~~~~~~~A~aiEliH~asLiHDDI~D-----------~s~~RRG~pt~h~~~G~~ 109 (334)
T 3rmg_A 58 VARLYGAVTPATLHAAVSLELLHTASLVHDDVVD-----------ESTERRGQLSVNAIFNNK 109 (334)
T ss_dssp HHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHHC--------------------CHHHHHHHH
T ss_pred HHHHhCCChHHHHHHHHHHHHHHHHHHHHcCccC-----------CCCCcCCCccHHHhcChH
Confidence 3333344445556666777888899999999977 256778888877766543
No 57
>4fp4_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; HET: GER UNL; 2.00A {Pyrobaculum calidifontis}
Probab=34.76 E-value=52 Score=29.58 Aligned_cols=42 Identities=17% Similarity=0.064 Sum_probs=28.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCccccCCcccchhhccchHHHHH
Q 019339 210 NLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVGTDIEDYKCSWLVVK 262 (342)
Q Consensus 210 ~~~~~~~l~~~g~~lG~afQi~DDlld~~~~~~~~GK~~~Dl~~gk~Tlp~l~ 262 (342)
+.+.+..+...-+-+=.+.-|-||+.| + +|+|+|++|+-..+
T Consensus 66 ~~~~~~~~A~aiEliH~aSLIHDDImD--~---------s~~RRG~Pt~h~~~ 107 (285)
T 4fp4_A 66 MDPRILEAAAIVELLHVVSLLQDDVMD--Q---------HDQRRGIKTPRAMY 107 (285)
T ss_dssp GCHHHHHHHHHHHHHHHHHHHHHHHHT--T---------CSBSSSSBCHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHCCCCC--C---------CCCCCCCCcHHHhc
Confidence 344455666777788889999999976 2 35566666665544
No 58
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A*
Probab=34.08 E-value=2.6e+02 Score=27.30 Aligned_cols=105 Identities=10% Similarity=-0.036 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHhHHHHHhccccccCcccCCCCCHHHHHHHHHcchhhhhhHHHHHHHHHHcC-CCHHHHHH---HHHHHH
Q 019339 147 LDLFNEVEFQTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAG-ENLDKHVE---VKDILV 222 (342)
Q Consensus 147 ~~~~~~~~~~~~~GQ~~d~~~~~~~~~~~~~~~~~~y~~~~~~KTg~l~~~~~~~~ga~lag-~~~~~~~~---l~~~g~ 222 (342)
...+.+....++.+-..+..|..++. .||.++|+++-..-+|.. . +.+..-..++. .+++..+- ..++-.
T Consensus 357 ~~~l~~~w~~l~~ayl~EAkW~~~g~----vPt~eEYl~~~~vS~g~~-~-l~~~~~~~~g~~~t~e~~e~~~~~p~i~~ 430 (543)
T 2ong_A 357 IPYLRQSWVDLADKYMVEARWFYGGH----KPSLEEYLENSWQSISGP-C-MLTHIFFRVTDSFTKETVDSLYKYHDLVR 430 (543)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTC----CCCHHHHHHHHHHHTCHH-H-HHHHHHHHHSSCCCHHHHHHHTTTCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCC----CCCHHHHHhcccccchHH-H-HHHHHHHHcCCCCCHHHHHHhcccHHHHH
Confidence 34455556677788888888877654 579999998876666643 1 11111112333 34444333 245777
Q ss_pred HHHHHHHHHhhhhhhcCCccccCCcccchhhcc-chHHHHHHHhhc
Q 019339 223 QMGIYFQVQDDFLDCFGSPEVIGKVGTDIEDYK-CSWLVVKALELC 267 (342)
Q Consensus 223 ~lG~afQi~DDlld~~~~~~~~GK~~~Dl~~gk-~Tlp~l~al~~~ 267 (342)
..++..-+.||+..+-.+ ..+|. .+...+|.-+..
T Consensus 431 ~~~~i~RL~NDi~S~~~E----------~~rG~~~n~V~cyMke~g 466 (543)
T 2ong_A 431 WSSFVLRLADDLGTSVEE----------VSRGDVPKSLQCYMSDYN 466 (543)
T ss_dssp HHHHHHHHHHHHHSSHHH----------HHTSCCCCHHHHHHHHTC
T ss_pred HHHHHHHHhcccchhhhc----------cccCCccHHHHHHHHHcC
Confidence 778888899999888532 22333 366677777664
No 59
>2azj_A Geranylgeranyl pyrophosphate synthetase; hexpps, trans-prenyltransferase; 2.40A {Sulfolobus solfataricus} PDB: 2azk_A
Probab=33.97 E-value=72 Score=28.56 Aligned_cols=53 Identities=9% Similarity=-0.097 Sum_probs=34.7
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCccccCCcccchhhccchHHHHHHHh
Q 019339 202 CALLMAGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVGTDIEDYKCSWLVVKALE 265 (342)
Q Consensus 202 ~ga~lag~~~~~~~~l~~~g~~lG~afQi~DDlld~~~~~~~~GK~~~Dl~~gk~Tlp~l~al~ 265 (342)
+++.+.|.+++....+...-+-+=.+.=|-||+.| .+|+|.|++|+-..+.-.
T Consensus 59 ~~~~~~g~~~~~~~~~A~avEliH~asLIHDDi~D-----------~s~~RRG~pt~h~~~G~~ 111 (289)
T 2azj_A 59 FFTVALGGDIKDSYGGALAIEILHSASLALCDIVD-----------LDATRRGDKAAWVVYGNR 111 (289)
T ss_dssp HHHHHTTCCGGGGHHHHHHHHHHHHHHHHHHHHHT-----------TCCBSSSSBCHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhCCCCC-----------CCCCCCCCccHHHhcChH
Confidence 34444455544455666677777788899999966 246777777776655433
No 60
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus}
Probab=33.57 E-value=42 Score=30.92 Aligned_cols=52 Identities=13% Similarity=0.036 Sum_probs=31.0
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCccccCCcccchhhccchHHHHH
Q 019339 200 VACALLMAGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVGTDIEDYKCSWLVVK 262 (342)
Q Consensus 200 ~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DDlld~~~~~~~~GK~~~Dl~~gk~Tlp~l~ 262 (342)
+.+++.+.|.+.+....+...-+-+=.+.-|-||+.|= +|+|.|++|+-..+
T Consensus 61 ~l~~~~~~g~~~~~~~~~A~aiEliH~asLiHDDI~D~-----------s~~RRG~pt~h~~~ 112 (341)
T 3mzv_A 61 TLAAARLVGYGGPFHVHLAATVEFIHTATLLHDDVVDE-----------SRQRRGRPTANLLW 112 (341)
T ss_dssp HHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHHC-----------------CTTSCCHHHHS
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHcCccCC-----------CCCcCCCccHHHhc
Confidence 33444444555555566777778888899999999772 45666666655443
No 61
>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor}
Probab=33.19 E-value=56 Score=30.23 Aligned_cols=52 Identities=12% Similarity=0.080 Sum_probs=36.2
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCccccCCcccchhhccchHHHHH
Q 019339 200 VACALLMAGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVGTDIEDYKCSWLVVK 262 (342)
Q Consensus 200 ~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DDlld~~~~~~~~GK~~~Dl~~gk~Tlp~l~ 262 (342)
+.+++.+.|.+++....+...-+-+=.+.=|-||+.|= +|+|.|++|+-..+
T Consensus 62 ~ll~~~~~g~~~~~~~~~A~avEliH~asLiHDDI~D~-----------s~~RRG~pt~h~~~ 113 (352)
T 3nf2_A 62 AVLSAEVTGAAPEVGVPGAVAVELVHNFSLLHDDLMDG-----------DEQRRHRDTVWKVH 113 (352)
T ss_dssp HHHHHHTTTCCGGGGHHHHHHHHHHHHHHHHHHHHHHT-----------CCEETTEECHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCC-----------CCCCCCCccHHHhc
Confidence 44455555666666667777778888899999999882 45677777765544
No 62
>2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway, isopentenyl transferase, structural GENO structural genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens} SCOP: a.128.1.1
Probab=32.42 E-value=79 Score=28.44 Aligned_cols=49 Identities=10% Similarity=-0.059 Sum_probs=34.3
Q ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCccccCCcccchhhccchHHHHHHHh
Q 019339 206 MAGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVGTDIEDYKCSWLVVKALE 265 (342)
Q Consensus 206 lag~~~~~~~~l~~~g~~lG~afQi~DDlld~~~~~~~~GK~~~Dl~~gk~Tlp~l~al~ 265 (342)
+.|.+++....+...-+.+=.+.=|.||+.| .+|+|.|++|+-..+...
T Consensus 39 ~~~~~~~~~~~~A~avEliH~asLiHDDi~D-----------~s~~RRG~pt~h~~~G~~ 87 (301)
T 2q80_A 39 WLKVPEDKLQIIIEVTEMLHNASLLIDDIED-----------NSKLRRGFPVAHSIYGIP 87 (301)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-----------TCSEETTEECHHHHHCHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHHHccccC-----------CCCCCCCCcchhhccCcH
Confidence 3355555556677777778888999999977 246778888777655443
No 63
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=31.71 E-value=3.6e+02 Score=27.84 Aligned_cols=103 Identities=9% Similarity=-0.103 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHhHHHHHhccccccCcccCCCCCHHHHHHHHHcchhhhhhHHHHHHHHH--HcC-CCHHHHHHHH-----
Q 019339 147 LDLFNEVEFQTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALL--MAG-ENLDKHVEVK----- 218 (342)
Q Consensus 147 ~~~~~~~~~~~~~GQ~~d~~~~~~~~~~~~~~~~~~y~~~~~~KTg~l~~~~~~~~ga~--lag-~~~~~~~~l~----- 218 (342)
...+.++...++.+-..+..|..++. .||.++|+++...-+|.. . + +.+.+. ++. .+++..+-..
T Consensus 627 ~~~l~~aw~~l~~ayl~EAkW~~~gy----vPt~eEYl~na~vS~g~~-~-l-l~~~~~~~~g~~lt~e~~e~~~~~s~p 699 (817)
T 3sdr_A 627 VSFFRKGWEDYLLGYYEEAEWLAAEY----VPTLDEYIKNGITSIGQR-I-L-LLSGVLIMDGQLLSQEALEKVDYPGRR 699 (817)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTC----CCCHHHHHHHHHHHTCHH-H-H-HHHHHTTCTTCCCCHHHHHTTCCTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCC----CCCHHHHHHhcccccccc-H-H-HHHHHHHHcCCCCCHHHHhcccccchH
Confidence 34455556677788888888876553 589999999877666642 1 0 111111 222 3555555444
Q ss_pred HHHHHHHHHHHHHhhhhhhcCCccccCCcccchhhccc-hHHHHHHHhh
Q 019339 219 DILVQMGIYFQVQDDFLDCFGSPEVIGKVGTDIEDYKC-SWLVVKALEL 266 (342)
Q Consensus 219 ~~g~~lG~afQi~DDlld~~~~~~~~GK~~~Dl~~gk~-Tlp~l~al~~ 266 (342)
++-...+...-+.||+..+..+. .+|.. +..-+|.-+.
T Consensus 700 ~l~~~~~~I~RL~NDi~S~k~E~----------~rG~~assV~cYMke~ 738 (817)
T 3sdr_A 700 VLTELNSLISRLADDTKTYKAEK----------ARGELASSIECYMKDH 738 (817)
T ss_dssp SHHHHHHHHHHHHHHHHSSCC----------------CCCHHHHHHHHS
T ss_pred HHHHHHHHHHHHhccchHHHHHH----------hcCCcchHHHHHHHhC
Confidence 67788899999999999986432 23333 6667777765
No 64
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A
Probab=30.74 E-value=2.7e+02 Score=24.19 Aligned_cols=71 Identities=10% Similarity=-0.051 Sum_probs=48.0
Q ss_pred HhccccccCcccCCCCCHHHHHHHHHcchhhhhhHHHHHHHHH-Hc-CCCHHHHHHHHHHHHHHHHHHHHHhhhhhhcCC
Q 019339 163 IDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALL-MA-GENLDKHVEVKDILVQMGIYFQVQDDFLDCFGS 240 (342)
Q Consensus 163 ~d~~~~~~~~~~~~~~~~~~y~~~~~~KTg~l~~~~~~~~ga~-la-g~~~~~~~~l~~~g~~lG~afQi~DDlld~~~~ 240 (342)
.+..|...+. .+|.++|+++-..-+|.. . .+.+... ++ ..+++..+.+.++-...+...-+.||+..|-.+
T Consensus 141 ~ea~~~~~~~----~Ps~eeYl~~r~~s~g~~-~--~~~~~~~~~g~~l~~e~~~~~~~l~~~~~~~~~l~NDl~S~~kE 213 (300)
T 1di1_A 141 RAQTDRARLS----IHELGHYLEYREKDVGKA-L--LSALMRFSMGLRLSADELQDMKALEANCAKQLSVVNDIYSYDKE 213 (300)
T ss_dssp HTTTCCCCCC----CCSHHHHHHHHHTCHHHH-H--HHHHHHHHHTCCCCHHHHHTTHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHhccccCC----CCCHHHHHHHHhhhccHH-H--HHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 3445554332 579999999877666643 2 2222222 22 236677778888999999999999999999644
No 65
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A*
Probab=30.52 E-value=3.9e+02 Score=26.08 Aligned_cols=102 Identities=13% Similarity=0.029 Sum_probs=59.8
Q ss_pred HHHHHHHHHHhHHHHHhccccccCcccCCCCCHHHHHHHHHcchhhhhhHHHHHHHHHHc-C--CCHHH-HH---HHHHH
Q 019339 148 DLFNEVEFQTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMA-G--ENLDK-HV---EVKDI 220 (342)
Q Consensus 148 ~~~~~~~~~~~~GQ~~d~~~~~~~~~~~~~~~~~~y~~~~~~KTg~l~~~~~~~~ga~la-g--~~~~~-~~---~l~~~ 220 (342)
..+.+....++.+-..+..|...+. .||.++|+++-..-+|.. ++.+.+.++ | .+++. .+ ...++
T Consensus 364 ~~l~~~w~~l~~ayl~EAkW~~~g~----vPt~eEYl~~~~vS~g~~----~l~~~~~~~~g~~lt~e~~~e~~~~~p~i 435 (549)
T 1n1b_A 364 QYLRKSVVDLVEAYFHEAKWYHSGY----TPSLDEYLNIAKISVASP----AIISPTYFTFANASHDTAVIDSLYQYHDI 435 (549)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTC----CCCHHHHHHHHHHHTCHH----HHHHHHHTTSTTCCCCHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCC----CCCHHHHHHhcccchhHH----HHHHHHHHHcCCCCcHHHHHhhhcccHHH
Confidence 4445555667777777888876654 579999999876655542 222333322 2 23343 33 23467
Q ss_pred HHHHHHHHHHHhhhhhhcCCccccCCcccchhhcc-chHHHHHHHhhc
Q 019339 221 LVQMGIYFQVQDDFLDCFGSPEVIGKVGTDIEDYK-CSWLVVKALELC 267 (342)
Q Consensus 221 g~~lG~afQi~DDlld~~~~~~~~GK~~~Dl~~gk-~Tlp~l~al~~~ 267 (342)
-...++..-+.||+..+-.+. .+|. .+...+|.-+..
T Consensus 436 ~~~~~~i~RL~NDi~S~~~E~----------~rG~v~n~V~cyMke~g 473 (549)
T 1n1b_A 436 LCLAGIILRLPDDLGTSYFEL----------ARGDVPKTIQCYMKETN 473 (549)
T ss_dssp HHHHHHHHHHHHHHC-------------------CCCCHHHHHHHHHC
T ss_pred HHHHHHHHHHhcccchhhhhh----------ccCCccHHHHHHHHHcC
Confidence 778899999999998886432 2333 367777777764
No 66
>4dhd_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; 1.65A {Pyrobaculum calidifontis} PDB: 4gp1_A* 4gp2_A*
Probab=29.52 E-value=48 Score=30.75 Aligned_cols=45 Identities=13% Similarity=0.082 Sum_probs=31.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCccccCCcccchhhccchHHHHHH
Q 019339 208 GENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVGTDIEDYKCSWLVVKA 263 (342)
Q Consensus 208 g~~~~~~~~l~~~g~~lG~afQi~DDlld~~~~~~~~GK~~~Dl~~gk~Tlp~l~a 263 (342)
|.+.+....+...-+-+=.++-|-||+.| .+|+|.|++|+-..+.
T Consensus 61 g~~~~~~~~~A~aiEliH~asLiHDDI~D-----------~s~~RRG~pt~h~~~G 105 (358)
T 4dhd_A 61 SGQWRPALPAAAIVELIHNYSLIYDDIID-----------RGDVRRGLPTVRKAFG 105 (358)
T ss_dssp HSCCGGGHHHHHHHHHHHHHHHHHHHHHT-----------TCCEETTEECHHHHHC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCcccc-----------CCCCcCCCccHHHhcC
Confidence 33444455667777888899999999977 2466777777655443
No 67
>1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate synthase, structural genom riken structural genomics/proteomics initiative; 1.55A {Thermus thermophilus}
Probab=29.24 E-value=79 Score=28.78 Aligned_cols=51 Identities=20% Similarity=0.242 Sum_probs=33.8
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCccccCCcccchhhccchHHHH
Q 019339 200 VACALLMAGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVGTDIEDYKCSWLVV 261 (342)
Q Consensus 200 ~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DDlld~~~~~~~~GK~~~Dl~~gk~Tlp~l 261 (342)
+.+++.+.|.+++....+...-+-+=.+.=|.||+.| + +|+|.|++|+-..
T Consensus 47 ~l~~~~~~~~~~~~~~~~A~avEliH~asLihDDi~D--~---------s~~RRG~pt~h~~ 97 (330)
T 1wmw_A 47 TVYSALAHGAPLEAGLEAATALELFQNWVLVHDDIED--G---------SEERRGRPALHRL 97 (330)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH--T---------CCEETTEECHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHccccc--C---------CCCCCCCCccccc
Confidence 3334444455555556677777778888999999987 2 4567777765544
No 68
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*
Probab=27.63 E-value=2.6e+02 Score=28.67 Aligned_cols=104 Identities=9% Similarity=-0.087 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHhHHHHHhccccccCcccCCCCCHHHHHHHHHcchhhhhhHHHHHHHHHHcC-CCHHHHHHH---HHHHH
Q 019339 147 LDLFNEVEFQTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAG-ENLDKHVEV---KDILV 222 (342)
Q Consensus 147 ~~~~~~~~~~~~~GQ~~d~~~~~~~~~~~~~~~~~~y~~~~~~KTg~l~~~~~~~~ga~lag-~~~~~~~~l---~~~g~ 222 (342)
+..+.++...++.+-..+..|..++. .||.++|+++...-+|.. . +.+..-..++. .+++..+-. .++-+
T Consensus 568 ~~yl~~aw~~l~~ayl~EAkW~~~gy----vPT~eEYl~na~vSsg~~-~-l~~~~~~~~G~~lt~e~~e~~~~~~~l~~ 641 (764)
T 3p5p_A 568 LAHIRKPWELYFNCYVQEREWLEAGY----IPTFEEYLKTYAISVGLG-P-CTLQPILLMGELVKDDVVEKVHYPSNMFE 641 (764)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTC----CCCHHHHHHHHHHHTCHH-H-HHHHHHHTSSSCCCGGGHHHHSTTSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCC----CCCHHHHHHhcchhchHH-H-HHHHHHHHcCCCCcHHHHhhhhhhHHHHH
Confidence 34455555677777777878876553 589999999877666642 1 11111111222 355555554 46788
Q ss_pred HHHHHHHHHhhhhhhcCCccccCCcccchhhccc-hHHHHHHHhh
Q 019339 223 QMGIYFQVQDDFLDCFGSPEVIGKVGTDIEDYKC-SWLVVKALEL 266 (342)
Q Consensus 223 ~lG~afQi~DDlld~~~~~~~~GK~~~Dl~~gk~-Tlp~l~al~~ 266 (342)
..+...-+.||+..+..+ ..+|.. +..-+|.-+.
T Consensus 642 ~~~~I~RL~NDi~S~k~E----------~~rG~~as~V~cYMke~ 676 (764)
T 3p5p_A 642 LVSLSWRLTNDTKTYQAE----------KARGQQASGIACYMKDN 676 (764)
T ss_dssp HHHHHHHHHHHHHHHHHH----------HTTTCCCSHHHHHHHHS
T ss_pred HHHHHHHhhhcccchHHH----------HhcCCcchHHHHHHHhc
Confidence 889999999999998632 223333 6666777665
No 69
>1v4e_A Octoprenyl-diphosphate synthase; trans-type prenyltransferase, thermophilic; 2.28A {Thermotoga maritima} SCOP: a.128.1.1 PDB: 1v4j_A 1wkz_A 1vg2_A 1wl3_A 1wl0_A 1wl2_A 1v4h_A 1v4i_A 1v4k_A 2azl_A 1wl1_A 1vg4_A 1vg3_A 1vg6_A 1vg7_A
Probab=27.59 E-value=89 Score=28.07 Aligned_cols=45 Identities=13% Similarity=0.072 Sum_probs=30.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCccccCCcccchhhccchHHHHHHHh
Q 019339 210 NLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVGTDIEDYKCSWLVVKALE 265 (342)
Q Consensus 210 ~~~~~~~l~~~g~~lG~afQi~DDlld~~~~~~~~GK~~~Dl~~gk~Tlp~l~al~ 265 (342)
+++....+...-+-+=.+.=|-||+.| .+|+|.|++|+-..+...
T Consensus 59 ~~~~~~~~A~avEliH~asLiHDDi~D-----------~s~~RRG~pt~h~~~G~~ 103 (299)
T 1v4e_A 59 IGEDAISSLAALELVHLASLLHDDVID-----------GARFRRGKETINFMYGDK 103 (299)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHH-----------TCSEETTEECHHHHHCHH
T ss_pred ChhHHHHHHHHHHHHHHHHHhhCCCCC-----------CCCCCCCCCchhhhcCHH
Confidence 334445566666677778889999977 246677777776655433
No 70
>3pko_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; HET: CIT; 1.98A {Lactobacillus brevis} PDB: 3n3d_A
Probab=27.43 E-value=87 Score=28.62 Aligned_cols=50 Identities=6% Similarity=-0.027 Sum_probs=34.5
Q ss_pred HHHHcC-CCHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCccccCCcccchhhccchHHHHHH
Q 019339 203 ALLMAG-ENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVGTDIEDYKCSWLVVKA 263 (342)
Q Consensus 203 ga~lag-~~~~~~~~l~~~g~~lG~afQi~DDlld~~~~~~~~GK~~~Dl~~gk~Tlp~l~a 263 (342)
++.+++ .+.+.+..+...-+-+=.+.=|-||+.| .+|+|.|++|+-..+.
T Consensus 66 ~~~~g~~~~~~~~~~~A~aiEliH~asLiHDDi~D-----------~s~~RRG~pt~h~~~G 116 (334)
T 3pko_A 66 FSTFGNAATPAQLQAGAAAIEILHVGTLIHDDVID-----------DSPTRRGVRTIQMTYG 116 (334)
T ss_dssp HHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-----------TCSEETTEECHHHHHC
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHhCccCC-----------CCCCcCCCccHHHHcC
Confidence 333444 3666666677777888889999999977 2466777777755443
No 71
>1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii}
Probab=26.49 E-value=63 Score=29.60 Aligned_cols=50 Identities=14% Similarity=0.055 Sum_probs=32.4
Q ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCccccCCcccchhhccchHHHHHH
Q 019339 203 ALLMAGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVGTDIEDYKCSWLVVKA 263 (342)
Q Consensus 203 ga~lag~~~~~~~~l~~~g~~lG~afQi~DDlld~~~~~~~~GK~~~Dl~~gk~Tlp~l~a 263 (342)
++.+.|.+++....+...-+-+=.+.-|-||+.| + +|+|.|++|+-..+.
T Consensus 57 ~~~~~g~~~~~~~~~A~avEliH~asLiHDDi~D--~---------s~~RRG~pt~h~~~G 106 (342)
T 1wy0_A 57 STEAVGGDPLRAIYPAVAIELIHNYSLVHDDIMD--M---------DETRRGKPTVHRIWG 106 (342)
T ss_dssp HTTTTTSCGGGGHHHHHHHHHHHHHHHHHHHHHH--T---------CCCSTTSCCHHHHHC
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHHCCccc--C---------CCCCCCCCccccccC
Confidence 3333354545455667777778888999999987 2 456666666655444
No 72
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A*
Probab=25.94 E-value=64 Score=29.98 Aligned_cols=51 Identities=10% Similarity=-0.068 Sum_probs=26.7
Q ss_pred HHHHHcC-CCHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCccccCCcccchhhccchHHHHHH
Q 019339 202 CALLMAG-ENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVGTDIEDYKCSWLVVKA 263 (342)
Q Consensus 202 ~ga~lag-~~~~~~~~l~~~g~~lG~afQi~DDlld~~~~~~~~GK~~~Dl~~gk~Tlp~l~a 263 (342)
+++.+.+ .+.+.+..+...-+-+=.+.=|-||+.|= +|+|.|++|+-..+.
T Consensus 84 l~~~~~~~~~~~~~~~~A~avEliH~asLIHDDImD~-----------s~~RRG~pt~h~~~G 135 (360)
T 3lmd_A 84 LASEFGEKPLSENVIKAAVVVEITHLATLYHDDVMDE-----------ASMRRGVPSANARWD 135 (360)
T ss_dssp HHHTTSSSTTCHHHHHHHHHHHHHHHHHHHHHHHHC----------------------CHHHH
T ss_pred HHHHHhCCCChHHHHHHHHHHHHHHHHHHHhCCCcCC-----------CCCCCCCCcHHhhcC
Confidence 3444555 44455556666777788899999999772 456677776655543
No 73
>2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase, farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A {Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A* 2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A* 2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A* 2z52_A* 2z78_A* 2z7h_A* ...
Probab=25.47 E-value=1e+02 Score=28.23 Aligned_cols=48 Identities=13% Similarity=0.036 Sum_probs=31.9
Q ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCccccCCcccchhhccchHHHHHH
Q 019339 205 LMAGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVGTDIEDYKCSWLVVKA 263 (342)
Q Consensus 205 ~lag~~~~~~~~l~~~g~~lG~afQi~DDlld~~~~~~~~GK~~~Dl~~gk~Tlp~l~a 263 (342)
.+.|.+++....+...-+-+=.+.=|.||+.| .+|+|.|++|+-..+.
T Consensus 53 ~~~~~~~~~~~~~A~avEliH~asLiHDDI~D-----------~s~~RRG~pt~h~~~G 100 (340)
T 2e8v_A 53 RVMNLPKDQLAIVSQIVELLHNSSLLIDDIED-----------NAPLRRGQTTSHLIFG 100 (340)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHT-----------TCSEETTEECHHHHTC
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHHHHhCcccc-----------CCCCCCCCcchhhccC
Confidence 33355555555666667777778889999976 2466777777665443
No 74
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=25.15 E-value=1e+02 Score=27.93 Aligned_cols=50 Identities=18% Similarity=0.065 Sum_probs=34.3
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhh--hhhcCCccccCCcccchhhccchHHHH
Q 019339 201 ACALLMAGENLDKHVEVKDILVQMGIYFQVQDDF--LDCFGSPEVIGKVGTDIEDYKCSWLVV 261 (342)
Q Consensus 201 ~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DDl--ld~~~~~~~~GK~~~Dl~~gk~Tlp~l 261 (342)
.+.+.+.|.+++....+...-+.+=.+.=|-||+ .| + +|+|+|++|+-..
T Consensus 59 l~~~~~~g~~~~~~~~~A~aiEliH~aSLIHDDip~mD--~---------~~~RRG~pt~h~~ 110 (313)
T 3lom_A 59 YLAGDLIDVDQGVLDIIAAALELTHCYSLIHDDLPAMD--N---------DDLRRGKPSCHKA 110 (313)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHSTTTT--C---------CSEETTEECHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhCCccccc--C---------CCccCCCCCchhh
Confidence 3344555666666677777778888899999999 55 3 4566777766544
No 75
>2ftz_A Geranyltranstransferase; TM0161, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima}
Probab=24.59 E-value=1.3e+02 Score=26.83 Aligned_cols=50 Identities=14% Similarity=0.024 Sum_probs=34.0
Q ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhh--hhhcCCccccCCcccchhhccchHHHHHH
Q 019339 203 ALLMAGENLDKHVEVKDILVQMGIYFQVQDDF--LDCFGSPEVIGKVGTDIEDYKCSWLVVKA 263 (342)
Q Consensus 203 ga~lag~~~~~~~~l~~~g~~lG~afQi~DDl--ld~~~~~~~~GK~~~Dl~~gk~Tlp~l~a 263 (342)
++.+.|.+++....+...-+-+=.+.=|-||+ .| .+|+|+|++|+-..+.
T Consensus 57 ~~~~~g~~~~~~~~~A~avEliH~asLIHDDIP~~D-----------~s~~RRG~pt~h~~~G 108 (284)
T 2ftz_A 57 LGEDLGVEEEXLLDVAVAVELFHTASLIHDDLPPID-----------NADFRRGXPSCHRTYG 108 (284)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHSTTTT-----------CCSEETTEECHHHHHC
T ss_pred HHHHhCcCHHHHHHHHHHHHHHHHHHHHhCCchhcC-----------CCCCCCCCccHHhhcC
Confidence 33333555555556666777777888999999 87 2467778887776653
No 76
>3aqb_B Component B of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_B*
Probab=24.40 E-value=76 Score=28.83 Aligned_cols=52 Identities=15% Similarity=0.161 Sum_probs=32.7
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCccccCCcccchhhccchHHHHHH
Q 019339 201 ACALLMAGENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVGTDIEDYKCSWLVVKA 263 (342)
Q Consensus 201 ~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DDlld~~~~~~~~GK~~~Dl~~gk~Tlp~l~a 263 (342)
.+++.+.|.+++....+...-+-+=.+.-|-||+.| + +|+|.|++|+-..+.
T Consensus 53 l~~~~~~g~~~~~~~~~A~avEliH~asLiHDDi~D--~---------s~~RRG~pt~h~~~G 104 (325)
T 3aqb_B 53 LLSGFLNDTQKDDLIRTAVSLELVHMASLVHDDYID--N---------SDMRRGNTSVHIAFD 104 (325)
T ss_dssp HHHHTTSSCCCHHHHHHHHHHHHHHHHHHHHHHHHH--T---------CCEETTEECHHHHTC
T ss_pred HHHHHHhCCChHHHHHHHHHHHHHHHHHHHhCcccc--C---------CCCCCCCCCcccccC
Confidence 334444444444445566667777788899999987 2 456677776655443
No 77
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=24.36 E-value=97 Score=27.93 Aligned_cols=48 Identities=21% Similarity=0.185 Sum_probs=32.1
Q ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHhhh--hhhcCCccccCCcccchhhccchHHHHHHH
Q 019339 206 MAGENLDKHVEVKDILVQMGIYFQVQDDF--LDCFGSPEVIGKVGTDIEDYKCSWLVVKAL 264 (342)
Q Consensus 206 lag~~~~~~~~l~~~g~~lG~afQi~DDl--ld~~~~~~~~GK~~~Dl~~gk~Tlp~l~al 264 (342)
+++..++....+...-+-+=.+.-|-||+ .| + +|+|+|++|+-..+..
T Consensus 65 ~g~~~~~~~~~~A~avEliH~asLIHDDIP~mD--~---------s~~RRG~pt~h~~~G~ 114 (302)
T 3p8l_A 65 FQKEMETQDYQVAASLEMIHTYSLIHDDLPAMD--D---------DDLRRGKPTNHKVFGE 114 (302)
T ss_dssp TTCCCCHHHHHHHHHHHHHHHHHHHHHHSTTTT--C---------CSEETTEECHHHHHCH
T ss_pred hCCCccHHHHHHHHHHHHHHHHHHHHCCchhcc--C---------CCccCCCcchhhhcCh
Confidence 44433324556667777788899999999 77 2 4667777777665543
No 78
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens}
Probab=24.23 E-value=95 Score=28.32 Aligned_cols=52 Identities=15% Similarity=0.158 Sum_probs=35.2
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhh--hhhcCCccccCCcccchhhccchHHHHH
Q 019339 200 VACALLMAGENLDKHVEVKDILVQMGIYFQVQDDF--LDCFGSPEVIGKVGTDIEDYKCSWLVVK 262 (342)
Q Consensus 200 ~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DDl--ld~~~~~~~~GK~~~Dl~~gk~Tlp~l~ 262 (342)
+.+++.+.|.+++....+...-+-+=.+.-|-||+ .| + +|+|+|++|+-..+
T Consensus 82 ~l~~~~~~g~~~~~~~~~A~aiEliH~aSLIHDDIP~mD--~---------s~~RRG~pt~h~~~ 135 (324)
T 3uca_A 82 MLLSYYIYKSDYKKILTPAMAIEMIHTYSLIHDDLPCMD--N---------DDLRRGKPTNHKVF 135 (324)
T ss_dssp HHHHHHTTCSCGGGGHHHHHHHHHHHHHHHHHHTSTTTT--C---------CSEETTEECHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHCCchhcc--C---------CCCCCCCccHHHhc
Confidence 33344444555555666777778888899999999 77 2 46677777765554
No 79
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Probab=23.83 E-value=1e+02 Score=27.96 Aligned_cols=52 Identities=13% Similarity=0.077 Sum_probs=34.1
Q ss_pred HHHHcCCCHHHH--HHHHHHHHHHHHHHHHHhhh--hhhcCCccccCCcccchhhccchHHHHHHHh
Q 019339 203 ALLMAGENLDKH--VEVKDILVQMGIYFQVQDDF--LDCFGSPEVIGKVGTDIEDYKCSWLVVKALE 265 (342)
Q Consensus 203 ga~lag~~~~~~--~~l~~~g~~lG~afQi~DDl--ld~~~~~~~~GK~~~Dl~~gk~Tlp~l~al~ 265 (342)
++.+.|.+++.. ..+...-+-+=.+.=|-||+ .| .+|+|+|++|+-..+.-.
T Consensus 59 ~~~~~g~~~~~~~~~~~A~aiEliH~aSLIHDDiP~mD-----------~s~~RRG~pt~h~~~G~~ 114 (309)
T 3pde_A 59 TMQSLGVTFVPERHWRPVMALELLHTYSLIHDDLPAMD-----------NDALRRGEPTNHVKFGAG 114 (309)
T ss_dssp HHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHHSTTTT-----------CCSEETTEECHHHHHCHH
T ss_pred HHHHhCCCHHHHhHhHHHHHHHHHHHHHHHHCCchhcc-----------CCCCCCCCcchhhhcChH
Confidence 333334444444 55666677778889999999 77 246778888877666443
No 80
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1
Probab=23.33 E-value=83 Score=28.35 Aligned_cols=53 Identities=17% Similarity=0.145 Sum_probs=27.5
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhh--hhhcCCccccCCcccchhhccchHHHHHH
Q 019339 200 VACALLMAGENLDKHVEVKDILVQMGIYFQVQDDF--LDCFGSPEVIGKVGTDIEDYKCSWLVVKA 263 (342)
Q Consensus 200 ~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DDl--ld~~~~~~~~GK~~~Dl~~gk~Tlp~l~a 263 (342)
+.+.+.+.|.+++....+...-+-+=.+.=|-||+ .| + +|+|.|++|+-..+.
T Consensus 58 ~l~~~~~~g~~~~~~~~~A~aiEliH~asLIHDDIp~mD--~---------s~~RRG~pt~h~~~G 112 (302)
T 3p8r_A 58 VYITGQMLGCELSDLDTPASAVECIHAYSLIHDDLPAMD--D---------DELRRGKPTCHIQFD 112 (302)
T ss_dssp HHHHHHTTTCCGGGTHHHHHHHHHHHHHHHHHHTCHHHH--C---------CC-------------
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHCCccccc--C---------CCcCCCCcchhhhcC
Confidence 33344455656666667777778888899999999 66 3 456666666644443
No 81
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=22.26 E-value=95 Score=28.00 Aligned_cols=51 Identities=16% Similarity=0.104 Sum_probs=34.9
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhh--hhhcCCccccCCcccchhhccchHHHHHH
Q 019339 202 CALLMAGENLDKHVEVKDILVQMGIYFQVQDDF--LDCFGSPEVIGKVGTDIEDYKCSWLVVKA 263 (342)
Q Consensus 202 ~ga~lag~~~~~~~~l~~~g~~lG~afQi~DDl--ld~~~~~~~~GK~~~Dl~~gk~Tlp~l~a 263 (342)
+.+.+.|.+++....+...-+.+=.+.=|-||+ .| + +|+|+|++|+-..+.
T Consensus 54 ~~~~~~g~~~~~~~~~A~aiEliH~asLIHDDip~mD--~---------s~~RRG~pt~h~~~G 106 (304)
T 3lsn_A 54 AACEALGGKPEQANGAACAVELIHAYSLVHDDLPAMD--D---------DDLRRGQPTTHKAFD 106 (304)
T ss_dssp HHHHHTTCCGGGGHHHHHHHHHHHHHHHHHHTSTTTT--C---------CSEETTEECHHHHSC
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHCCccccc--C---------CCccCCCCchHhhcC
Confidence 344444556666667777778888899999999 55 2 466777777765543
No 82
>1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A*
Probab=22.20 E-value=1.6e+02 Score=26.35 Aligned_cols=52 Identities=15% Similarity=0.089 Sum_probs=33.9
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhh--hhhcCCccccCCcccchhhccchHHHHHH
Q 019339 201 ACALLMAGENLDKHVEVKDILVQMGIYFQVQDDF--LDCFGSPEVIGKVGTDIEDYKCSWLVVKA 263 (342)
Q Consensus 201 ~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DDl--ld~~~~~~~~GK~~~Dl~~gk~Tlp~l~a 263 (342)
.+++.+.|.+++....+...-+-+=.+.=|-||+ .| + +|+|.|++|+-..+.
T Consensus 53 l~~~~~~g~~~~~~~~~A~avEliH~asLiHDDiP~~D--~---------s~~RRG~pt~h~~~G 106 (299)
T 1rqj_A 53 YATGHMFGVSTNTLDAPAAAVECIHAYSLIHDDLPAMD--D---------DDLRRGLPTCHVKFG 106 (299)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHTSTTTT--C---------CCEETTEECHHHHHC
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHhHHHhCCChhhc--C---------CCCCCCCCChhhhcC
Confidence 3344444555555555666667777788899999 87 2 466777777665544
No 83
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=21.95 E-value=1.3e+02 Score=26.94 Aligned_cols=53 Identities=13% Similarity=0.103 Sum_probs=36.1
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhh--hhhcCCccccCCcccchhhccchHHHHHH
Q 019339 200 VACALLMAGENLDKHVEVKDILVQMGIYFQVQDDF--LDCFGSPEVIGKVGTDIEDYKCSWLVVKA 263 (342)
Q Consensus 200 ~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DDl--ld~~~~~~~~GK~~~Dl~~gk~Tlp~l~a 263 (342)
+.+.+.+.|.+++....+...-+.+=.+.=|-||+ .| + +|+|.|++|+-..+.
T Consensus 49 ~l~~~~~~g~~~~~~~~~A~avEliH~asLIHDDip~mD--~---------s~~RRG~pt~h~~~G 103 (297)
T 3m0g_A 49 AIESAAIHGISMAQAMPAALAVEALHAYSLVHDDMPCMD--N---------DDLRRGLPTVHKKWD 103 (297)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHTSTTTT--C---------CSEETTEECHHHHSC
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhcCccccC--C---------CCccCCCCCchhhcC
Confidence 33344455666666677777778888899999999 55 2 466777777665543
No 84
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei}
Probab=21.88 E-value=45 Score=30.05 Aligned_cols=46 Identities=11% Similarity=-0.037 Sum_probs=27.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCccccCCcccchhhcc
Q 019339 208 GENLDKHVEVKDILVQMGIYFQVQDDFLDCFGSPEVIGKVGTDIEDYK 255 (342)
Q Consensus 208 g~~~~~~~~l~~~g~~lG~afQi~DDlld~~~~~~~~GK~~~Dl~~gk 255 (342)
|.+++....+...-+-+=.+.=|-||+.|= ++..-||+.....-|.
T Consensus 58 g~~~~~~~~~A~avEliH~asLIHDDi~D~--s~~RRG~pt~h~~~G~ 103 (295)
T 3ipi_A 58 SGSYSRSLNAALAVEMMHSASLIHDDLLDQ--GLVRRNLPSAPEKFGP 103 (295)
T ss_dssp HSCCGGGHHHHHHHHHHHHHHHHHHHHHHH--HTSCTTSCCCCCSSCH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCcCcCC--CCCCCCCccHHHhcCc
Confidence 333444566677778888899999999873 2333344333333333
No 85
>2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase, isoprene biosynthesis, multifunctional enzyme, carotenoid biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A 3kra_A 3krc_A* 3krf_A* 3kro_A* 3krp_A* 3oab_A* 3oac_A*
Probab=21.27 E-value=1.7e+02 Score=26.06 Aligned_cols=50 Identities=16% Similarity=0.119 Sum_probs=32.4
Q ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhh--hhhcCCccccCCcccchhhccchHHHHHH
Q 019339 203 ALLMAGENLDKHVEVKDILVQMGIYFQVQDDF--LDCFGSPEVIGKVGTDIEDYKCSWLVVKA 263 (342)
Q Consensus 203 ga~lag~~~~~~~~l~~~g~~lG~afQi~DDl--ld~~~~~~~~GK~~~Dl~~gk~Tlp~l~a 263 (342)
++.+.|.+++.+..+...-+-+=.+.=|-||+ .| + +|+|+|++|+-..+.
T Consensus 63 ~~~~~g~~~~~~~~~A~avEliH~asLiHDDip~mD--~---------s~~RRG~pt~h~~~G 114 (293)
T 2j1p_A 63 ACELVGGEESLAMPAACAVEMIHTMSLIHDDLPCMD--N---------DDLRRGKPTNHKVYG 114 (293)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHHHHHHTSTTTT--C---------CSEETTEECHHHHHC
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHHHCCchhcc--C---------CCCCCCCCchhhhcC
Confidence 34444555555455666666677788899998 66 2 466777777766553
No 86
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1
Probab=21.25 E-value=1.3e+02 Score=26.97 Aligned_cols=50 Identities=18% Similarity=0.147 Sum_probs=32.8
Q ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhh--hhhcCCccccCCcccchhhccchHHHHHH
Q 019339 203 ALLMAGENLDKHVEVKDILVQMGIYFQVQDDF--LDCFGSPEVIGKVGTDIEDYKCSWLVVKA 263 (342)
Q Consensus 203 ga~lag~~~~~~~~l~~~g~~lG~afQi~DDl--ld~~~~~~~~GK~~~Dl~~gk~Tlp~l~a 263 (342)
++.+.|.+++.+..+...-+-+=.+.-|-||+ .| + +|+|+|++|+-..+.
T Consensus 53 ~~~~~g~~~~~~~~~A~avEliH~asLiHDDiP~~D--~---------s~~RRG~pt~h~~~G 104 (301)
T 1rtr_A 53 TLDSLNTEYELGMKSAIALEMIHTYSLIHDDLPAMD--N---------DDYRRGKLTNHKVYG 104 (301)
T ss_dssp HHHHTTSCGGGGHHHHHHHHHHHHHHHHHHHSTTTT--C---------CSEETTEECHHHHHC
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHHhCCchhcc--C---------CCccCCCccHHhhcC
Confidence 34444544444455666677777888999999 76 2 466777777766553
No 87
>1xkp_A Putative membrane-bound YOP targeting protein YOP; YOPN, type III secretion, SYCN, membrane PR chaperon complex; HET: MLY; 1.70A {Yersinia pestis} SCOP: a.243.1.3 PDB: 1xl3_A*
Probab=20.19 E-value=1.5e+02 Score=25.87 Aligned_cols=89 Identities=7% Similarity=-0.079 Sum_probs=61.2
Q ss_pred chhhccchHHHHHHHhhccHHHHHHHHHHhCCC---ChHhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHhhcCCChHH
Q 019339 250 DIEDYKCSWLVVKALELCNEEQKKLVHENYGKV---DPACVAKVKELYKTLDLEGAFVEYEKESYEKLTKSIEAHPTKEV 326 (342)
Q Consensus 250 Dl~~gk~Tlp~l~al~~~~~~~~~~l~~~~~~~---~~~~~~~i~~li~~~g~~~~~~~~~~~~~~~a~~~l~~lp~~~~ 326 (342)
=|+-|..+.+.+.+.....+.....|+.+|.+- ..........|+.++|.-+.. ..++-..+..-.-|++.+++-.
T Consensus 142 ~i~AGiNia~aa~~f~~~~~~s~~~LR~lYr~~v~~~~s~~~~~~~~~~~yg~~~~~-~vl~fL~~AL~~DL~S~~pSi~ 220 (246)
T 1xkp_A 142 TIVLGARITPEAYRESQSGVNPLQPLRDTYRDAVMGYQGIYAIWSDLQXRFPNGDID-SVILFLQXALSADLQSQQSGSG 220 (246)
T ss_dssp HHHHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCTTSCHH-HHHHHHHHHHHHHHHHCCCSHH
T ss_pred hhhhhhhHHHHHHHHhhcccCCHHHHHHHHHHHHhccccHHHHHHHHHHHhCchHHH-HHHHHHHHHHHHHHhhcCCCCC
Confidence 477899999999998875444556777777542 223446678888889875533 2344344444577888988877
Q ss_pred HHHHHHHHHHHhh
Q 019339 327 QAVLKSFLAKIYK 339 (342)
Q Consensus 327 ~~~L~~l~~~~~~ 339 (342)
...|..+...+-+
T Consensus 221 ~~~L~~lls~L~~ 233 (246)
T 1xkp_A 221 REXLGIVISDLQX 233 (246)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888888877653
Done!