BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019340
(342 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XM6|A Chain A, Crystal Structure Of The Protein Corresponding To Locus
C5321 From Cft073 E.Coli Strain
Length = 490
Score = 60.8 bits (146), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 58/215 (26%), Positives = 103/215 (47%), Gaps = 12/215 (5%)
Query: 108 GKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWE-----MDKKEAAISLYRQ 162
G R+ +G GV ++ +A+ + K A +G A + G+MY E +DK E+ + +R
Sbjct: 82 GLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAES-VKWFRL 140
Query: 163 AAVLGDPAGQFNLGISYLQAQPANAEE--AVKLLYQASIAGHVRAQYQLALCLHRGRGVD 220
AA G +GQ ++G +Y + + A + +A+ G+V + QL RG GV+
Sbjct: 141 AAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVE 200
Query: 221 FNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLE 280
N +A+WY ++A G + + Y FG G+ + Q+R ++A+ G+ AQ
Sbjct: 201 RNDAISAQWYRKSATSGDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFR 260
Query: 281 HGL----GLFTEGEMMKAVVYLELATRAGETAADH 311
G GL E +KA+ + + G + +
Sbjct: 261 LGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQY 295
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 73/159 (45%), Gaps = 6/159 (3%)
Query: 176 GISYLQAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAE 235
G+ L + PA ++ L Q + +G +AQ +L +G +L +A W+ RAAE
Sbjct: 12 GLFALVSLPALGNVNLEQLKQKAESGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAE 71
Query: 236 GGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHGLGLFTEGEMMK-- 293
GY A Y L Y GEG+P + QA W K+AA G +AQ G+ ++ EG +K
Sbjct: 72 QGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQNLGV-MYHEGNGVKVD 130
Query: 294 ---AVVYLELATRAGETAADHVKNVILQQLSATSRDRAM 329
+V + LA G + + +RD M
Sbjct: 131 KAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVM 169
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 76/156 (48%), Gaps = 6/156 (3%)
Query: 125 LDSFLKGAARGSTLAMVDAGLMYWEMDKKEA----AISLYRQAAVLGDPAGQFNLGISYL 180
L+ + A G A ++ G Y++ ++ A+ +R+AA G ++ LG+ Y+
Sbjct: 27 LEQLKQKAESGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYM 86
Query: 181 QAQ--PANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGY 238
+ P + +AV +A++ G +AQ L + H G GV + E+ +W+ AAE G
Sbjct: 87 NGEGVPQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGR 146
Query: 239 VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGH 274
+ Y G+G+ + AR+W +AA+ G+
Sbjct: 147 DSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGN 182
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 81/179 (45%), Gaps = 12/179 (6%)
Query: 101 AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDK-------- 152
++ R G + G K KAL+ + K A +G++ +Y DK
Sbjct: 255 SIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLY---DKGAEGVAKN 311
Query: 153 KEAAISLYRQAAVLGDPAGQFNLGISYLQ-AQPANAEEAVKLLYQASIAGHVRAQYQLAL 211
+E AIS Y ++A GD Q NLG Y + ++AV+ +A+ G AQ+ L
Sbjct: 312 REQAISWYTKSAEQGDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGN 371
Query: 212 CLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAA 270
L +G+GV + Q+AA W +AAE G A Y +G G+ + QA W A+
Sbjct: 372 ALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTAS 430
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 70/273 (25%), Positives = 112/273 (41%), Gaps = 51/273 (18%)
Query: 108 GKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYW-----EMDKKEAAISLYRQ 162
G + G GV +N + + K A G L + MY+ D ++ + L+ Q
Sbjct: 190 GYMYSRGLGVERNDAISAQWYRKSATSGDELGQLHLADMYYFGIGVTQDYTQSRV-LFSQ 248
Query: 163 AAVLGDPAGQFNLGISYLQAQPANAEEAVKLL--YQASIA-GHVRAQYQLALCLHRG-RG 218
+A G+ QF LG L+ A A+E +K L Y+ S G+ QY LA +G G
Sbjct: 249 SAEQGNSIAQFRLGY-ILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEG 307
Query: 219 VDFNLQEAARWYLRAAEGGYVRAMYNTSLCY---------------------------SF 251
V N ++A WY ++AE G A N Y F
Sbjct: 308 VAKNREQAISWYTKSAEQGDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQF 367
Query: 252 --------GEGLPLSHRQARKWMKRAADCGHGKAQLEHG----LGLFTEGEMMKAVVYLE 299
G+G+ +QA WM++AA+ G AQ++ G GL E + ++A + +
Sbjct: 368 NLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFD 427
Query: 300 LA-TRAGETAADHVKNVILQQLSATSRDRAMLV 331
A T +N+ ++L+A +A L+
Sbjct: 428 TASTNDMNLFGTENRNITEKKLTAKQLQQAELL 460
>pdb|1OUV|A Chain A, Helicobacter Cysteine Rich Protein C (Hcpc)
Length = 273
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 57/127 (44%), Gaps = 3/127 (2%)
Query: 147 YWEMDKKEAAISLYRQAAVLGDPAGQFNLGISYLQAQ--PANAEEAVKLLYQASIAGHVR 204
Y E D +A + +A L + +G FNLG+ Y Q Q N ++A +A +
Sbjct: 17 YKEKDFTQAK-KYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSN 75
Query: 205 AQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARK 264
+ L + G+GV N +A ++Y +A + Y + Y G+ + ++A +
Sbjct: 76 GCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVE 135
Query: 265 WMKRAAD 271
+ +A D
Sbjct: 136 YFTKACD 142
Score = 36.2 bits (82), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 52/101 (51%), Gaps = 6/101 (5%)
Query: 207 YQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWM 266
+ L + ++G+GV+ NL++AA +Y +A + Y + Y G+G+ + +A ++
Sbjct: 42 FNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYY 101
Query: 267 KRAADCGHGKAQLEHGLGLFTEGEMM-----KAVVYLELAT 302
+A D + + G G++ +G+++ KAV Y A
Sbjct: 102 SKACDLKYAEGCASLG-GIYHDGKVVTRDFKKAVEYFTKAC 141
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 48/209 (22%), Positives = 78/209 (37%), Gaps = 13/209 (6%)
Query: 89 KSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYW 148
K + + L+E G + G+GV KNL KA + K + G +Y+
Sbjct: 26 KKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYY 85
Query: 149 E----MDKKEAAISLYRQAAVLGDPAGQFNLGISYLQAQPA--NAEEAVKLLYQASIAGH 202
A+ Y +A L G +LG Y + + ++AV+ +A
Sbjct: 86 SGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLND 145
Query: 203 VRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQA 262
L GRG +L++A Y +A + +N Y GEG + ++A
Sbjct: 146 GDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEA 205
Query: 263 RKWMKRAADCGHGKAQLEHGLGLFTEGEM 291
+A +LE+G G F G M
Sbjct: 206 LARYSKA-------CELENGGGCFNLGAM 227
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 74/181 (40%), Gaps = 24/181 (13%)
Query: 108 GKRFKHGRGVRKNLDKALDSF-----LKGAARGSTLAMV--DAGLMYWEMDKKEAAISLY 160
G + G+GV +N +KAL + LK A ++L + D ++ + K A+ +
Sbjct: 81 GNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKK---AVEYF 137
Query: 161 RQAAVLGDPAGQFNLGISYL--QAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRG 218
+A L D G LG Y + P + ++A+ +A + H G G
Sbjct: 138 TKACDLNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEG 197
Query: 219 VDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFG------EGLPLSHRQARKWMKRAADC 272
N +EA Y +A E + N C++ G EG+ + +QA + K+
Sbjct: 198 ATKNFKEALARYSKACE------LENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKL 251
Query: 273 G 273
G
Sbjct: 252 G 252
>pdb|2YXG|A Chain A, Crystal Structure Of Dihyrodipicolinate Synthase (Dapa)
pdb|2YXG|B Chain B, Crystal Structure Of Dihyrodipicolinate Synthase (Dapa)
pdb|2YXG|C Chain C, Crystal Structure Of Dihyrodipicolinate Synthase (Dapa)
pdb|2YXG|D Chain D, Crystal Structure Of Dihyrodipicolinate Synthase (Dapa)
Length = 289
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 46/110 (41%), Gaps = 14/110 (12%)
Query: 204 RAQYQLALCLHRGRGVDFN-LQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQA 262
+ Y + + + VDF+ L+E + + G V + GE LSH +
Sbjct: 3 KGVYPAIITPFKNKEVDFDGLEENINFLIENGVSGIVA-------VGTTGESPTLSHEEH 55
Query: 263 RKWMKRAADCGHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHV 312
+K +++ D +G+ Q+ G G E +EL+ A + AD V
Sbjct: 56 KKVIEKVVDVVNGRVQVIAGAGSNCTEEA------IELSVFAEDVGADAV 99
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.133 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,231,357
Number of Sequences: 62578
Number of extensions: 345037
Number of successful extensions: 665
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 638
Number of HSP's gapped (non-prelim): 14
length of query: 342
length of database: 14,973,337
effective HSP length: 100
effective length of query: 242
effective length of database: 8,715,537
effective search space: 2109159954
effective search space used: 2109159954
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)