Query 019340
Match_columns 342
No_of_seqs 269 out of 2508
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 08:40:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019340.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019340hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4626 O-linked N-acetylgluco 99.9 4.2E-25 9.1E-30 201.8 21.9 249 77-341 230-488 (966)
2 KOG4626 O-linked N-acetylgluco 99.9 1.7E-24 3.7E-29 197.9 18.3 247 79-341 198-454 (966)
3 KOG1550 Extracellular protein 99.9 9.7E-22 2.1E-26 188.9 26.1 237 87-324 230-523 (552)
4 COG0790 FOG: TPR repeat, SEL1 99.9 9.1E-21 2E-25 169.5 27.0 202 114-316 50-278 (292)
5 KOG1129 TPR repeat-containing 99.9 2.8E-21 6.1E-26 165.0 21.2 302 17-340 127-460 (478)
6 COG0790 FOG: TPR repeat, SEL1 99.9 1E-20 2.3E-25 169.1 26.0 202 77-282 53-276 (292)
7 KOG1550 Extracellular protein 99.8 1.4E-19 3.1E-24 174.0 22.7 229 91-320 188-442 (552)
8 TIGR00990 3a0801s09 mitochondr 99.8 7.2E-18 1.6E-22 165.8 31.7 87 70-163 132-220 (615)
9 TIGR00990 3a0801s09 mitochondr 99.8 8.4E-18 1.8E-22 165.3 30.3 249 78-340 307-573 (615)
10 KOG1155 Anaphase-promoting com 99.8 2.7E-17 5.9E-22 146.6 26.2 230 61-304 258-536 (559)
11 PRK15174 Vi polysaccharide exp 99.8 6.3E-17 1.4E-21 159.3 31.7 83 76-164 87-171 (656)
12 PRK15174 Vi polysaccharide exp 99.8 8.7E-17 1.9E-21 158.3 29.8 263 67-341 44-350 (656)
13 PRK11788 tetratricopeptide rep 99.8 1.8E-16 3.9E-21 147.4 29.8 252 72-340 42-313 (389)
14 PRK11447 cellulose synthase su 99.8 3.1E-16 6.8E-21 163.9 31.8 257 72-340 276-668 (1157)
15 PRK11447 cellulose synthase su 99.8 4.1E-16 8.9E-21 163.1 30.4 249 73-339 359-701 (1157)
16 TIGR02917 PEP_TPR_lipo putativ 99.8 9E-16 1.9E-20 156.5 32.2 250 75-340 441-700 (899)
17 KOG1129 TPR repeat-containing 99.8 1.6E-17 3.4E-22 142.2 15.9 218 76-310 234-464 (478)
18 TIGR02917 PEP_TPR_lipo putativ 99.8 6.5E-16 1.4E-20 157.5 30.9 249 71-336 607-898 (899)
19 PRK09782 bacteriophage N4 rece 99.8 7.3E-16 1.6E-20 155.9 30.3 245 81-340 454-708 (987)
20 PRK09782 bacteriophage N4 rece 99.8 1.8E-15 3.9E-20 153.0 31.1 245 78-339 489-741 (987)
21 KOG2003 TPR repeat-containing 99.7 3.8E-16 8.2E-21 139.1 21.9 256 69-337 423-688 (840)
22 PRK11788 tetratricopeptide rep 99.7 3.3E-15 7.1E-20 139.0 27.1 228 100-341 34-281 (389)
23 PRK11189 lipoprotein NlpI; Pro 99.7 7.9E-15 1.7E-19 131.0 27.1 205 99-317 62-279 (296)
24 KOG1126 DNA-binding cell divis 99.7 1.1E-15 2.4E-20 142.0 21.2 240 75-330 329-612 (638)
25 KOG4014 Uncharacterized conser 99.7 6.2E-16 1.3E-20 122.0 15.6 170 100-272 33-233 (248)
26 PRK12370 invasion protein regu 99.7 1.2E-14 2.6E-19 140.8 27.7 223 100-335 257-499 (553)
27 TIGR02521 type_IV_pilW type IV 99.7 1.8E-14 3.8E-19 123.2 25.6 191 100-304 30-232 (234)
28 KOG1126 DNA-binding cell divis 99.7 7.3E-16 1.6E-20 143.2 17.3 197 100-310 420-626 (638)
29 KOG1155 Anaphase-promoting com 99.7 2E-14 4.4E-19 128.5 24.9 190 100-303 261-494 (559)
30 TIGR02521 type_IV_pilW type IV 99.7 1.8E-14 3.9E-19 123.2 23.8 195 136-340 30-234 (234)
31 PRK12370 invasion protein regu 99.7 3.3E-14 7E-19 137.9 27.7 213 77-303 273-501 (553)
32 PF13429 TPR_15: Tetratricopep 99.7 6.7E-16 1.5E-20 137.2 13.8 254 69-337 12-276 (280)
33 KOG2002 TPR-containing nuclear 99.7 8.5E-14 1.8E-18 134.2 25.9 249 78-341 249-528 (1018)
34 PRK10049 pgaA outer membrane p 99.6 3.3E-13 7.2E-18 135.6 30.9 181 151-341 251-459 (765)
35 PRK10049 pgaA outer membrane p 99.6 5.1E-13 1.1E-17 134.3 29.7 251 76-340 26-341 (765)
36 COG3063 PilF Tfp pilus assembl 99.6 1.8E-13 3.9E-18 112.5 20.3 194 101-338 35-236 (250)
37 KOG1173 Anaphase-promoting com 99.6 1.2E-13 2.6E-18 126.4 21.0 205 100-318 311-534 (611)
38 PRK11189 lipoprotein NlpI; Pro 99.6 5.8E-13 1.3E-17 119.1 23.2 209 120-340 41-267 (296)
39 KOG1125 TPR repeat-containing 99.6 2E-13 4.4E-18 125.2 20.0 242 69-324 289-559 (579)
40 KOG4014 Uncharacterized conser 99.6 2E-13 4.4E-18 107.9 16.3 155 79-236 49-233 (248)
41 KOG0547 Translocase of outer m 99.6 1.3E-12 2.9E-17 117.7 22.9 238 73-325 334-587 (606)
42 KOG2002 TPR-containing nuclear 99.6 4.5E-12 9.7E-17 122.5 27.6 260 65-339 270-560 (1018)
43 KOG2003 TPR repeat-containing 99.5 3.4E-12 7.4E-17 114.1 23.7 196 100-309 489-694 (840)
44 KOG1173 Anaphase-promoting com 99.5 8.2E-12 1.8E-16 114.5 22.7 262 63-340 242-520 (611)
45 COG3063 PilF Tfp pilus assembl 99.5 1.7E-11 3.7E-16 101.0 22.1 160 65-236 35-202 (250)
46 PF13429 TPR_15: Tetratricopep 99.5 5.6E-13 1.2E-17 118.4 13.6 210 77-303 56-276 (280)
47 KOG1840 Kinesin light chain [C 99.5 2.1E-11 4.6E-16 114.2 22.7 212 77-302 211-477 (508)
48 KOG2076 RNA polymerase III tra 99.4 2.1E-10 4.6E-15 110.4 28.7 251 67-335 141-509 (895)
49 PRK14574 hmsH outer membrane p 99.4 1E-10 2.2E-15 116.7 27.7 264 65-340 34-398 (822)
50 COG2956 Predicted N-acetylgluc 99.4 1.3E-10 2.8E-15 100.1 24.2 258 64-340 35-313 (389)
51 PRK10747 putative protoheme IX 99.4 5.7E-10 1.2E-14 104.0 30.6 248 69-337 88-389 (398)
52 TIGR00540 hemY_coli hemY prote 99.4 4E-10 8.7E-15 105.5 29.5 250 68-335 87-396 (409)
53 KOG1840 Kinesin light chain [C 99.4 3.5E-11 7.5E-16 112.9 21.8 220 102-335 200-476 (508)
54 KOG1125 TPR repeat-containing 99.4 2.5E-11 5.4E-16 111.7 18.4 221 105-335 289-524 (579)
55 KOG0547 Translocase of outer m 99.4 9.2E-11 2E-15 106.0 20.9 221 101-335 326-563 (606)
56 KOG1130 Predicted G-alpha GTPa 99.4 3E-12 6.6E-17 113.2 9.5 193 98-304 92-344 (639)
57 PLN03218 maturation of RBCL 1; 99.3 5.6E-09 1.2E-13 107.1 32.0 250 77-337 484-782 (1060)
58 COG2956 Predicted N-acetylgluc 99.3 5.8E-10 1.3E-14 96.2 20.4 210 118-337 48-277 (389)
59 PLN03218 maturation of RBCL 1; 99.3 7.8E-09 1.7E-13 106.1 32.1 247 75-336 447-711 (1060)
60 PRK10747 putative protoheme IX 99.3 4E-09 8.6E-14 98.4 27.6 213 74-304 127-390 (398)
61 TIGR03302 OM_YfiO outer membra 99.3 3.5E-10 7.6E-15 97.8 19.1 175 99-303 31-231 (235)
62 KOG1130 Predicted G-alpha GTPa 99.3 6.8E-11 1.5E-15 104.8 14.4 249 73-335 25-341 (639)
63 PLN02789 farnesyltranstransfer 99.3 2.2E-09 4.7E-14 96.4 24.4 203 77-286 49-266 (320)
64 PRK15359 type III secretion sy 99.3 2E-10 4.3E-15 91.3 15.1 118 125-249 13-136 (144)
65 PLN02789 farnesyltranstransfer 99.3 6.1E-09 1.3E-13 93.5 25.7 216 119-340 51-304 (320)
66 TIGR00540 hemY_coli hemY prote 99.3 3.2E-09 6.9E-14 99.4 24.5 218 72-304 125-399 (409)
67 PRK10370 formate-dependent nit 99.3 4.5E-10 9.8E-15 94.1 16.7 123 184-311 52-180 (198)
68 TIGR03302 OM_YfiO outer membra 99.2 1.7E-09 3.6E-14 93.5 19.1 197 46-271 14-231 (235)
69 PRK15359 type III secretion sy 99.2 7.7E-10 1.7E-14 88.0 15.5 108 101-214 24-137 (144)
70 PLN03081 pentatricopeptide (PP 99.2 2.2E-08 4.8E-13 100.2 28.4 248 74-337 96-388 (697)
71 cd05804 StaR_like StaR_like; a 99.2 4.6E-09 1E-13 96.4 21.1 197 97-306 2-217 (355)
72 PLN03081 pentatricopeptide (PP 99.2 4.6E-09 9.9E-14 105.2 22.6 244 77-337 271-556 (697)
73 PRK10370 formate-dependent nit 99.1 1.3E-09 2.9E-14 91.3 14.2 116 118-237 52-174 (198)
74 PRK14574 hmsH outer membrane p 99.1 1.5E-08 3.2E-13 101.4 23.8 191 98-301 31-229 (822)
75 KOG0548 Molecular co-chaperone 99.1 2.9E-08 6.4E-13 91.1 20.8 197 102-312 225-463 (539)
76 PRK15179 Vi polysaccharide bio 99.1 9E-09 2E-13 101.2 18.9 148 79-236 63-217 (694)
77 KOG1174 Anaphase-promoting com 99.1 4.8E-08 1E-12 87.1 20.9 188 118-314 313-510 (564)
78 KOG1128 Uncharacterized conser 99.1 6.9E-09 1.5E-13 98.2 16.1 214 100-339 397-617 (777)
79 KOG0495 HAT repeat protein [RN 99.0 1.7E-07 3.6E-12 88.1 24.3 252 74-342 593-884 (913)
80 KOG2076 RNA polymerase III tra 99.0 2.4E-07 5.1E-12 89.9 26.0 215 118-342 152-482 (895)
81 cd05804 StaR_like StaR_like; a 99.0 7.9E-08 1.7E-12 88.3 21.3 199 134-339 3-216 (355)
82 PF14938 SNAP: Soluble NSF att 99.0 4.6E-08 9.9E-13 86.9 17.2 197 119-338 29-266 (282)
83 PRK15179 Vi polysaccharide bio 99.0 1.2E-07 2.6E-12 93.3 21.6 128 135-272 84-217 (694)
84 PRK15363 pathogenicity island 99.0 1.4E-08 3E-13 80.0 11.7 94 101-200 35-132 (157)
85 PLN03077 Protein ECB2; Provisi 98.9 3.2E-07 6.9E-12 94.2 24.9 205 119-335 302-515 (857)
86 TIGR02552 LcrH_SycD type III s 98.9 2.3E-08 5E-13 78.4 13.0 104 127-236 5-114 (135)
87 PRK15363 pathogenicity island 98.9 1.6E-08 3.5E-13 79.7 11.6 95 136-236 34-132 (157)
88 KOG1127 TPR repeat-containing 98.9 6.1E-08 1.3E-12 94.6 17.1 257 77-341 538-882 (1238)
89 KOG0624 dsRNA-activated protei 98.9 1.2E-06 2.6E-11 76.7 23.1 232 100-341 37-301 (504)
90 PLN03077 Protein ECB2; Provisi 98.9 6.1E-07 1.3E-11 92.1 24.8 241 77-338 436-720 (857)
91 PRK14720 transcript cleavage f 98.9 1.8E-07 3.9E-12 93.2 19.9 205 100-318 30-266 (906)
92 TIGR02552 LcrH_SycD type III s 98.9 3.4E-08 7.4E-13 77.5 12.2 96 100-201 16-115 (135)
93 KOG0550 Molecular chaperone (D 98.9 2.1E-07 4.6E-12 83.0 17.2 250 74-339 58-351 (486)
94 COG5010 TadD Flp pilus assembl 98.9 3.1E-07 6.7E-12 77.6 17.1 170 124-304 52-231 (257)
95 KOG4162 Predicted calmodulin-b 98.8 1.9E-06 4.1E-11 82.5 23.5 225 98-336 475-781 (799)
96 KOG0624 dsRNA-activated protei 98.8 1.3E-05 2.8E-10 70.4 26.6 259 69-341 42-373 (504)
97 COG5010 TadD Flp pilus assembl 98.8 7.9E-07 1.7E-11 75.1 18.7 174 79-269 47-228 (257)
98 PRK14720 transcript cleavage f 98.8 4.1E-07 8.8E-12 90.7 18.9 184 135-341 29-255 (906)
99 COG4783 Putative Zn-dependent 98.8 1.3E-06 2.8E-11 79.8 20.6 145 99-272 304-454 (484)
100 PF12569 NARP1: NMDA receptor- 98.8 7.2E-06 1.6E-10 78.2 26.7 255 69-339 8-292 (517)
101 KOG1174 Anaphase-promoting com 98.8 3.7E-06 8E-11 75.3 22.6 227 100-341 231-503 (564)
102 KOG4162 Predicted calmodulin-b 98.8 2E-05 4.3E-10 75.7 28.9 257 79-341 408-752 (799)
103 COG3071 HemY Uncharacterized e 98.8 4.5E-05 9.8E-10 68.2 29.1 248 68-335 87-387 (400)
104 KOG1156 N-terminal acetyltrans 98.8 7.1E-06 1.5E-10 77.3 24.7 262 67-340 9-285 (700)
105 KOG1128 Uncharacterized conser 98.8 4.4E-07 9.5E-12 86.3 16.5 202 75-304 408-616 (777)
106 PLN03088 SGT1, suppressor of 98.7 2.5E-07 5.4E-12 84.8 14.5 95 118-214 15-115 (356)
107 PF04733 Coatomer_E: Coatomer 98.7 5.2E-08 1.1E-12 86.4 9.6 253 71-342 7-269 (290)
108 KOG0495 HAT repeat protein [RN 98.7 1.5E-05 3.2E-10 75.4 25.6 213 119-339 564-783 (913)
109 PF14938 SNAP: Soluble NSF att 98.7 6.9E-07 1.5E-11 79.4 16.6 168 151-340 29-227 (282)
110 PRK04841 transcriptional regul 98.7 5.7E-06 1.2E-10 85.5 25.0 250 75-337 462-759 (903)
111 PLN03088 SGT1, suppressor of 98.7 3.8E-07 8.3E-12 83.6 14.3 104 140-249 5-114 (356)
112 KOG0548 Molecular co-chaperone 98.7 2E-06 4.4E-11 79.3 18.2 197 139-341 226-458 (539)
113 KOG1127 TPR repeat-containing 98.7 1.9E-06 4.2E-11 84.5 18.9 177 118-304 471-659 (1238)
114 CHL00033 ycf3 photosystem I as 98.7 5.6E-07 1.2E-11 73.5 13.4 93 100-196 34-138 (168)
115 PRK02603 photosystem I assembl 98.7 1.4E-06 3.1E-11 71.4 15.5 93 99-197 33-132 (172)
116 PRK02603 photosystem I assembl 98.7 1.1E-06 2.5E-11 72.0 14.8 112 135-249 33-161 (172)
117 PF09976 TPR_21: Tetratricopep 98.7 7.5E-07 1.6E-11 70.9 13.0 109 119-233 25-144 (145)
118 KOG3060 Uncharacterized conser 98.6 3.4E-06 7.4E-11 71.0 16.3 154 75-238 62-222 (289)
119 PF13414 TPR_11: TPR repeat; P 98.6 1.5E-07 3.3E-12 64.5 6.6 61 137-199 3-66 (69)
120 PF12688 TPR_5: Tetratrico pep 98.6 1.4E-06 3E-11 66.4 12.1 93 102-200 2-104 (120)
121 KOG3060 Uncharacterized conser 98.6 2.9E-05 6.4E-10 65.4 20.4 162 143-315 58-231 (289)
122 TIGR02795 tol_pal_ybgF tol-pal 98.6 1.6E-06 3.4E-11 66.0 11.9 91 103-199 4-104 (119)
123 PF13414 TPR_11: TPR repeat; P 98.6 2.4E-07 5.3E-12 63.5 6.6 64 100-167 2-68 (69)
124 TIGR02795 tol_pal_ybgF tol-pal 98.5 2E-06 4.3E-11 65.5 12.1 94 137-236 2-105 (119)
125 COG4783 Putative Zn-dependent 98.5 3.3E-05 7.1E-10 70.9 21.5 146 134-304 303-454 (484)
126 PF09976 TPR_21: Tetratricopep 98.5 5.8E-06 1.2E-10 65.8 14.5 125 68-198 14-145 (145)
127 cd00189 TPR Tetratricopeptide 98.5 1.5E-06 3.2E-11 62.2 10.2 72 141-214 4-79 (100)
128 CHL00033 ycf3 photosystem I as 98.5 4.2E-06 9E-11 68.3 13.9 94 119-214 13-117 (168)
129 cd00189 TPR Tetratricopeptide 98.5 1.7E-06 3.6E-11 62.0 10.1 92 103-200 2-97 (100)
130 PF12895 Apc3: Anaphase-promot 98.5 5.1E-07 1.1E-11 64.6 7.2 77 119-197 3-84 (84)
131 PRK04841 transcriptional regul 98.5 5.8E-05 1.3E-09 78.1 24.9 247 76-336 420-718 (903)
132 PRK10866 outer membrane biogen 98.5 6.5E-05 1.4E-09 65.0 20.9 172 100-301 31-238 (243)
133 PF12688 TPR_5: Tetratrico pep 98.5 7.4E-06 1.6E-10 62.4 13.0 92 138-235 2-103 (120)
134 PRK10153 DNA-binding transcrip 98.4 1.1E-05 2.3E-10 77.4 16.5 131 99-236 337-482 (517)
135 PF12895 Apc3: Anaphase-promot 98.4 1.3E-06 2.7E-11 62.5 7.4 78 150-233 2-84 (84)
136 PF12569 NARP1: NMDA receptor- 98.4 6.3E-05 1.4E-09 71.8 20.9 229 100-340 3-259 (517)
137 COG3071 HemY Uncharacterized e 98.4 0.00049 1.1E-08 61.7 24.6 213 118-341 97-326 (400)
138 PRK11906 transcriptional regul 98.4 4.9E-05 1.1E-09 70.0 18.8 159 100-270 252-434 (458)
139 KOG2376 Signal recognition par 98.3 0.00016 3.4E-09 67.8 21.1 222 66-309 13-258 (652)
140 KOG0550 Molecular chaperone (D 98.3 5.9E-05 1.3E-09 67.8 17.5 156 69-236 173-350 (486)
141 KOG1586 Protein required for f 98.3 5.6E-05 1.2E-09 63.0 16.1 194 119-334 28-258 (288)
142 KOG1941 Acetylcholine receptor 98.3 2.4E-05 5.1E-10 69.2 14.7 225 65-303 6-274 (518)
143 PF13432 TPR_16: Tetratricopep 98.3 2.1E-06 4.6E-11 58.0 6.6 56 142-199 2-59 (65)
144 PRK11906 transcriptional regul 98.3 5.7E-05 1.2E-09 69.6 17.7 157 172-332 258-430 (458)
145 PRK10153 DNA-binding transcrip 98.3 1.6E-05 3.5E-10 76.1 14.8 139 167-309 335-487 (517)
146 PF13525 YfiO: Outer membrane 98.3 9.6E-05 2.1E-09 62.3 17.6 76 101-180 5-90 (203)
147 PRK10866 outer membrane biogen 98.3 0.00041 8.8E-09 60.1 21.8 180 135-335 30-238 (243)
148 PRK10803 tol-pal system protei 98.3 1.7E-05 3.8E-10 69.2 13.3 95 136-236 141-246 (263)
149 COG4235 Cytochrome c biogenesi 98.3 1.9E-05 4.2E-10 68.4 13.3 112 122-237 139-257 (287)
150 COG4235 Cytochrome c biogenesi 98.3 2.2E-05 4.8E-10 68.1 13.5 120 186-310 137-262 (287)
151 PRK15331 chaperone protein Sic 98.3 1.5E-05 3.4E-10 63.3 11.5 93 102-200 38-134 (165)
152 KOG0553 TPR repeat-containing 98.3 1.5E-05 3.2E-10 68.9 12.2 95 118-214 94-194 (304)
153 PRK10803 tol-pal system protei 98.3 1.7E-05 3.7E-10 69.3 12.8 96 100-200 141-246 (263)
154 KOG0553 TPR repeat-containing 98.3 2.1E-05 4.5E-10 68.0 12.6 105 139-249 83-193 (304)
155 PF13525 YfiO: Outer membrane 98.2 0.00024 5.2E-09 59.9 18.7 170 136-324 4-195 (203)
156 PF13424 TPR_12: Tetratricopep 98.2 6.6E-06 1.4E-10 57.8 7.6 58 139-198 7-73 (78)
157 PF13432 TPR_16: Tetratricopep 98.2 6E-06 1.3E-10 55.7 6.9 61 244-308 2-64 (65)
158 KOG1156 N-terminal acetyltrans 98.2 0.00021 4.7E-09 67.6 19.1 216 109-341 16-251 (700)
159 KOG3081 Vesicle coat complex C 98.2 0.0011 2.3E-08 56.6 21.4 258 67-342 10-275 (299)
160 PRK15331 chaperone protein Sic 98.2 3.2E-05 6.9E-10 61.5 11.7 94 137-236 37-134 (165)
161 PF13424 TPR_12: Tetratricopep 98.2 5.5E-06 1.2E-10 58.2 6.5 61 101-165 5-74 (78)
162 KOG4340 Uncharacterized conser 98.1 0.00018 4E-09 62.2 15.5 208 76-299 21-265 (459)
163 KOG2376 Signal recognition par 98.1 0.00065 1.4E-08 63.9 20.1 209 117-340 24-255 (652)
164 PF04733 Coatomer_E: Coatomer 98.1 2.5E-05 5.4E-10 69.4 10.3 195 98-307 63-268 (290)
165 KOG3617 WD40 and TPR repeat-co 98.1 0.00077 1.7E-08 65.7 20.6 91 138-234 859-994 (1416)
166 KOG3785 Uncharacterized conser 98.1 0.00012 2.6E-09 64.6 13.5 204 118-336 35-250 (557)
167 KOG4340 Uncharacterized conser 98.0 0.00014 2.9E-09 63.0 12.8 178 119-305 24-208 (459)
168 KOG3617 WD40 and TPR repeat-co 98.0 0.00089 1.9E-08 65.3 19.2 116 169-303 858-995 (1416)
169 PLN03098 LPA1 LOW PSII ACCUMUL 98.0 2.9E-05 6.3E-10 71.3 9.0 69 97-169 71-144 (453)
170 KOG1915 Cell cycle control pro 98.0 0.0098 2.1E-07 54.9 24.2 81 78-165 154-235 (677)
171 KOG0543 FKBP-type peptidyl-pro 98.0 0.00017 3.7E-09 64.9 12.8 104 106-215 213-337 (397)
172 COG0457 NrfG FOG: TPR repeat [ 97.9 0.0078 1.7E-07 49.9 23.1 193 101-307 59-268 (291)
173 KOG1586 Protein required for f 97.9 0.0024 5.1E-08 53.5 17.9 122 104-235 37-182 (288)
174 KOG4555 TPR repeat-containing 97.9 0.00032 7E-09 53.2 11.5 98 107-210 49-154 (175)
175 KOG1941 Acetylcholine receptor 97.9 0.00068 1.5E-08 60.2 15.1 110 119-234 136-273 (518)
176 PLN03098 LPA1 LOW PSII ACCUMUL 97.9 6.9E-05 1.5E-09 68.9 9.3 70 63-136 73-143 (453)
177 smart00671 SEL1 Sel1-like repe 97.9 3E-05 6.5E-10 45.4 4.6 35 102-136 2-36 (36)
178 COG1729 Uncharacterized protei 97.9 0.00023 5E-09 61.1 11.4 91 140-236 144-244 (262)
179 COG1729 Uncharacterized protei 97.9 0.00028 6.1E-09 60.6 11.8 82 183-272 153-244 (262)
180 smart00671 SEL1 Sel1-like repe 97.8 3.4E-05 7.3E-10 45.2 4.3 33 241-273 3-35 (36)
181 KOG3785 Uncharacterized conser 97.8 0.0026 5.6E-08 56.5 17.4 214 72-305 29-249 (557)
182 COG0457 NrfG FOG: TPR repeat [ 97.8 0.014 2.9E-07 48.5 25.3 209 119-339 37-266 (291)
183 KOG0543 FKBP-type peptidyl-pro 97.8 0.00053 1.1E-08 61.9 13.2 140 139-303 210-354 (397)
184 PF09295 ChAPs: ChAPs (Chs5p-A 97.8 0.00059 1.3E-08 62.9 13.9 108 119-233 183-294 (395)
185 KOG4555 TPR repeat-containing 97.8 0.00047 1E-08 52.3 10.7 96 143-244 49-152 (175)
186 PF08238 Sel1: Sel1 repeat; I 97.8 5.1E-05 1.1E-09 45.3 4.5 35 240-274 2-39 (39)
187 PF08238 Sel1: Sel1 repeat; I 97.8 3.9E-05 8.4E-10 45.9 3.8 36 101-136 1-39 (39)
188 PF14559 TPR_19: Tetratricopep 97.8 6.9E-05 1.5E-09 50.9 5.5 48 119-166 5-54 (68)
189 KOG2047 mRNA splicing factor [ 97.7 0.0095 2.1E-07 56.9 20.8 207 118-334 360-611 (835)
190 PF09295 ChAPs: ChAPs (Chs5p-A 97.7 0.0012 2.7E-08 60.8 14.7 94 149-249 181-278 (395)
191 PF14559 TPR_19: Tetratricopep 97.7 8.7E-05 1.9E-09 50.4 5.4 61 148-210 2-66 (68)
192 COG4700 Uncharacterized protei 97.7 0.013 2.9E-07 47.5 18.1 126 119-250 70-204 (251)
193 PF13371 TPR_9: Tetratricopept 97.7 0.00031 6.7E-09 48.4 7.7 53 145-199 3-57 (73)
194 COG4785 NlpI Lipoprotein NlpI, 97.6 0.012 2.6E-07 49.0 17.1 199 100-314 64-277 (297)
195 KOG2047 mRNA splicing factor [ 97.6 0.04 8.7E-07 52.8 22.8 215 77-304 359-615 (835)
196 PF13371 TPR_9: Tetratricopept 97.6 0.00047 1E-08 47.4 7.6 62 108-173 2-67 (73)
197 PF13428 TPR_14: Tetratricopep 97.5 0.00017 3.7E-09 44.4 4.5 40 138-177 2-43 (44)
198 KOG3081 Vesicle coat complex C 97.5 0.023 5E-07 48.7 18.4 220 102-340 10-238 (299)
199 KOG2471 TPR repeat-containing 97.5 0.0017 3.8E-08 59.8 12.3 112 65-180 240-380 (696)
200 PF13281 DUF4071: Domain of un 97.5 0.019 4.1E-07 52.4 18.1 169 136-305 140-335 (374)
201 COG4700 Uncharacterized protei 97.4 0.026 5.7E-07 45.9 16.4 110 100-215 88-205 (251)
202 PF00515 TPR_1: Tetratricopept 97.4 0.00038 8.3E-09 40.0 4.3 33 275-307 1-33 (34)
203 KOG1585 Protein required for f 97.3 0.053 1.1E-06 46.0 17.9 93 103-199 33-138 (308)
204 KOG1585 Protein required for f 97.3 0.038 8.2E-07 46.9 16.9 191 118-332 24-250 (308)
205 PF07719 TPR_2: Tetratricopept 97.3 0.0004 8.6E-09 39.9 3.6 33 275-307 1-33 (34)
206 PF13512 TPR_18: Tetratricopep 97.3 0.0079 1.7E-07 46.9 11.7 76 101-180 10-95 (142)
207 PF13428 TPR_14: Tetratricopep 97.2 0.00076 1.6E-08 41.5 4.7 41 169-211 1-43 (44)
208 KOG1070 rRNA processing protei 97.2 0.069 1.5E-06 55.6 20.5 188 119-319 1472-1680(1710)
209 PF13512 TPR_18: Tetratricopep 97.1 0.014 2.9E-07 45.6 11.6 79 135-215 8-96 (142)
210 PF10300 DUF3808: Protein of u 97.1 0.074 1.6E-06 50.8 18.7 147 150-304 201-376 (468)
211 KOG1070 rRNA processing protei 97.0 0.26 5.6E-06 51.6 22.6 191 67-274 1460-1665(1710)
212 PF13281 DUF4071: Domain of un 97.0 0.14 3E-06 46.9 18.8 172 100-278 140-339 (374)
213 KOG1915 Cell cycle control pro 97.0 0.32 6.9E-06 45.3 25.6 245 82-338 261-536 (677)
214 PF13176 TPR_7: Tetratricopept 97.0 0.0016 3.5E-08 38.0 4.0 28 277-304 1-28 (36)
215 COG4105 ComL DNA uptake lipopr 96.9 0.21 4.6E-06 42.9 22.3 91 135-227 32-133 (254)
216 PF13431 TPR_17: Tetratricopep 96.9 0.0012 2.5E-08 38.1 3.1 31 265-295 1-33 (34)
217 COG4105 ComL DNA uptake lipopr 96.9 0.22 4.8E-06 42.7 20.6 171 100-300 33-229 (254)
218 PF10300 DUF3808: Protein of u 96.9 0.056 1.2E-06 51.6 16.0 151 115-271 198-375 (468)
219 PF07719 TPR_2: Tetratricopept 96.9 0.0022 4.8E-08 36.6 4.0 29 138-166 2-30 (34)
220 PF13431 TPR_17: Tetratricopep 96.8 0.0011 2.3E-08 38.3 2.5 30 128-157 2-33 (34)
221 PF00515 TPR_1: Tetratricopept 96.8 0.0026 5.7E-08 36.4 4.0 29 138-166 2-30 (34)
222 PF13176 TPR_7: Tetratricopept 96.8 0.0026 5.5E-08 37.2 3.9 26 139-164 1-26 (36)
223 KOG2053 Mitochondrial inherita 96.8 0.71 1.5E-05 46.3 24.5 233 63-308 7-259 (932)
224 PF06552 TOM20_plant: Plant sp 96.8 0.024 5.3E-07 45.8 10.4 26 291-316 96-121 (186)
225 PF04184 ST7: ST7 protein; In 96.7 0.38 8.2E-06 45.2 19.0 98 171-274 261-377 (539)
226 PF06552 TOM20_plant: Plant sp 96.7 0.017 3.7E-07 46.7 9.2 79 122-200 8-109 (186)
227 KOG2796 Uncharacterized conser 96.7 0.17 3.8E-06 43.5 15.4 114 118-237 190-316 (366)
228 PF13181 TPR_8: Tetratricopept 96.6 0.0044 9.6E-08 35.4 3.8 31 276-306 2-32 (34)
229 KOG2471 TPR repeat-containing 96.4 0.018 3.9E-07 53.4 8.6 109 100-214 239-380 (696)
230 PF09986 DUF2225: Uncharacteri 96.2 0.04 8.6E-07 46.7 9.3 82 118-201 90-195 (214)
231 KOG4642 Chaperone-dependent E3 96.2 0.023 4.9E-07 48.0 7.2 80 118-199 23-106 (284)
232 PF13181 TPR_8: Tetratricopept 96.2 0.013 2.7E-07 33.4 4.2 29 138-166 2-30 (34)
233 COG2976 Uncharacterized protei 96.1 0.13 2.9E-06 42.1 11.3 93 139-237 91-189 (207)
234 KOG2796 Uncharacterized conser 96.1 0.47 1E-05 41.0 14.8 132 170-311 178-322 (366)
235 PF09986 DUF2225: Uncharacteri 96.0 0.067 1.4E-06 45.3 9.4 65 241-306 120-196 (214)
236 COG4785 NlpI Lipoprotein NlpI, 95.9 0.87 1.9E-05 38.2 17.0 195 118-335 59-263 (297)
237 COG2976 Uncharacterized protei 95.7 0.23 5E-06 40.8 10.9 93 171-273 91-189 (207)
238 KOG2041 WD40 repeat protein [G 95.6 0.79 1.7E-05 44.8 15.6 178 92-300 683-877 (1189)
239 PF13174 TPR_6: Tetratricopept 95.4 0.024 5.3E-07 31.8 3.4 31 276-306 1-31 (33)
240 PF13374 TPR_10: Tetratricopep 95.4 0.038 8.2E-07 32.9 4.3 29 276-304 3-31 (42)
241 PF05843 Suf: Suppressor of fo 95.3 0.27 5.8E-06 43.6 11.2 125 172-305 4-137 (280)
242 PF13174 TPR_6: Tetratricopept 95.3 0.025 5.4E-07 31.8 3.1 27 139-165 2-28 (33)
243 PF04184 ST7: ST7 protein; In 95.0 1.8 3.9E-05 40.9 15.7 178 119-313 182-384 (539)
244 PF05843 Suf: Suppressor of fo 95.0 0.59 1.3E-05 41.4 12.5 90 142-236 6-99 (280)
245 PF13374 TPR_10: Tetratricopep 94.7 0.073 1.6E-06 31.6 4.3 28 138-165 3-30 (42)
246 KOG4648 Uncharacterized conser 94.7 0.098 2.1E-06 46.6 6.4 91 105-201 101-195 (536)
247 KOG2053 Mitochondrial inherita 94.6 4.6 0.0001 40.8 18.2 179 118-301 22-216 (932)
248 PF03704 BTAD: Bacterial trans 94.6 1 2.2E-05 35.4 11.7 59 138-198 63-123 (146)
249 KOG2300 Uncharacterized conser 94.5 0.95 2.1E-05 42.4 12.5 131 171-307 9-159 (629)
250 PF02259 FAT: FAT domain; Int 94.5 1.2 2.6E-05 40.6 13.6 168 104-278 149-344 (352)
251 COG3118 Thioredoxin domain-con 94.5 2.5 5.5E-05 37.2 14.4 112 118-236 147-265 (304)
252 smart00028 TPR Tetratricopepti 94.5 0.054 1.2E-06 29.3 3.1 31 276-306 2-32 (34)
253 KOG3364 Membrane protein invol 94.4 1 2.2E-05 34.8 10.5 93 228-321 20-119 (149)
254 PF08631 SPO22: Meiosis protei 94.3 3.6 7.8E-05 36.4 16.9 116 118-236 6-150 (278)
255 KOG4648 Uncharacterized conser 94.2 0.41 8.8E-06 42.8 9.2 55 175-235 103-159 (536)
256 PF03704 BTAD: Bacterial trans 94.2 1.5 3.3E-05 34.3 11.9 57 171-233 64-122 (146)
257 KOG4642 Chaperone-dependent E3 94.0 0.21 4.6E-06 42.4 6.7 88 143-236 16-107 (284)
258 PF02259 FAT: FAT domain; Int 93.9 1.4 3E-05 40.1 12.8 168 136-310 145-344 (352)
259 PF11207 DUF2989: Protein of u 93.7 2.2 4.7E-05 35.5 12.1 68 121-191 122-198 (203)
260 KOG4234 TPR repeat-containing 93.7 1.2 2.6E-05 36.9 10.4 84 118-203 108-200 (271)
261 KOG4234 TPR repeat-containing 93.5 1.2 2.7E-05 36.9 10.1 92 75-170 105-201 (271)
262 PF14853 Fis1_TPR_C: Fis1 C-te 93.4 0.4 8.6E-06 30.6 5.7 45 276-320 2-48 (53)
263 PF11207 DUF2989: Protein of u 93.1 0.77 1.7E-05 38.1 8.5 63 92-159 132-200 (203)
264 KOG3783 Uncharacterized conser 93.1 8.5 0.00018 36.8 19.2 202 98-307 264-523 (546)
265 KOG0545 Aryl-hydrocarbon recep 93.1 2 4.4E-05 36.8 11.0 66 241-310 232-299 (329)
266 KOG2300 Uncharacterized conser 92.8 4.7 0.0001 38.0 13.8 130 77-212 335-486 (629)
267 KOG0545 Aryl-hydrocarbon recep 92.7 2 4.3E-05 36.8 10.5 117 137-275 178-296 (329)
268 smart00028 TPR Tetratricopepti 92.6 0.16 3.5E-06 27.2 3.0 27 139-165 3-29 (34)
269 PF08631 SPO22: Meiosis protei 92.6 6.8 0.00015 34.6 22.3 218 77-302 5-273 (278)
270 PF07721 TPR_4: Tetratricopept 92.3 0.17 3.6E-06 26.9 2.5 23 139-161 3-25 (26)
271 PF10602 RPN7: 26S proteasome 92.3 1.8 3.9E-05 35.4 9.8 58 138-197 37-99 (177)
272 TIGR03504 FimV_Cterm FimV C-te 91.9 0.94 2E-05 27.6 5.7 31 278-308 2-32 (44)
273 PF07721 TPR_4: Tetratricopept 91.6 0.24 5.1E-06 26.3 2.6 24 276-299 2-25 (26)
274 PF12968 DUF3856: Domain of Un 91.5 2.6 5.6E-05 31.8 8.7 79 119-199 23-128 (144)
275 TIGR03504 FimV_Cterm FimV C-te 91.3 0.5 1.1E-05 28.8 4.1 31 140-170 2-32 (44)
276 PF04781 DUF627: Protein of un 91.2 0.96 2.1E-05 33.6 6.3 94 72-165 3-106 (111)
277 PF10602 RPN7: 26S proteasome 91.1 2.7 5.9E-05 34.4 9.6 91 102-198 37-140 (177)
278 COG3118 Thioredoxin domain-con 90.9 11 0.00023 33.4 15.7 57 138-196 135-193 (304)
279 KOG3824 Huntingtin interacting 90.8 0.89 1.9E-05 40.2 6.6 69 103-176 119-191 (472)
280 PF12968 DUF3856: Domain of Un 90.5 5.5 0.00012 30.2 9.6 93 69-165 13-128 (144)
281 KOG1914 mRNA cleavage and poly 90.5 13 0.00028 35.7 14.3 112 187-304 309-430 (656)
282 KOG2610 Uncharacterized conser 90.1 14 0.00031 33.4 14.4 156 144-309 110-283 (491)
283 COG3898 Uncharacterized membra 89.9 16 0.00035 33.7 23.9 208 118-338 167-392 (531)
284 KOG4507 Uncharacterized conser 89.8 0.97 2.1E-05 43.3 6.5 81 118-200 620-705 (886)
285 PF07720 TPR_3: Tetratricopept 89.7 0.96 2.1E-05 26.2 4.1 31 276-306 2-34 (36)
286 PF12862 Apc5: Anaphase-promot 89.5 4.9 0.00011 28.9 8.9 47 258-304 13-70 (94)
287 KOG2610 Uncharacterized conser 89.3 12 0.00026 33.8 12.4 151 71-234 109-274 (491)
288 KOG3616 Selective LIM binding 88.7 23 0.00049 35.5 14.8 151 146-305 846-1025(1636)
289 PF09205 DUF1955: Domain of un 87.8 6.5 0.00014 30.4 8.6 43 272-314 117-159 (161)
290 PF12862 Apc5: Anaphase-promot 87.7 6.4 0.00014 28.3 8.5 47 119-165 12-69 (94)
291 COG4649 Uncharacterized protei 87.6 14 0.0003 30.1 15.3 111 119-235 72-195 (221)
292 KOG1914 mRNA cleavage and poly 87.1 30 0.00065 33.4 18.4 173 127-304 267-464 (656)
293 PF10373 EST1_DNA_bind: Est1 D 87.0 2.4 5.1E-05 37.2 7.0 58 262-319 1-62 (278)
294 KOG4814 Uncharacterized conser 86.7 7.5 0.00016 38.0 10.2 80 118-199 367-456 (872)
295 KOG3824 Huntingtin interacting 86.4 2.9 6.2E-05 37.1 6.8 61 148-210 127-191 (472)
296 PF14853 Fis1_TPR_C: Fis1 C-te 85.9 4.4 9.6E-05 25.8 5.9 36 139-174 3-40 (53)
297 PF04053 Coatomer_WDAD: Coatom 85.7 20 0.00044 34.0 12.7 117 128-269 311-428 (443)
298 KOG0551 Hsp90 co-chaperone CNS 85.0 3.7 8E-05 36.8 6.9 86 108-199 88-181 (390)
299 KOG4507 Uncharacterized conser 84.8 1.5 3.3E-05 42.1 4.7 84 257-340 621-707 (886)
300 KOG0551 Hsp90 co-chaperone CNS 84.6 3.2 7E-05 37.1 6.4 90 140-235 84-181 (390)
301 KOG0376 Serine-threonine phosp 84.5 1.3 2.9E-05 41.4 4.2 105 220-328 17-127 (476)
302 KOG0985 Vesicle coat protein c 84.5 57 0.0012 34.2 17.4 60 167-235 1102-1161(1666)
303 KOG1308 Hsp70-interacting prot 84.3 0.44 9.5E-06 42.6 0.9 49 184-236 127-177 (377)
304 PF04053 Coatomer_WDAD: Coatom 84.2 20 0.00043 34.1 12.0 163 101-301 264-428 (443)
305 PF09205 DUF1955: Domain of un 84.1 16 0.00035 28.4 9.0 40 167-208 118-157 (161)
306 PF10373 EST1_DNA_bind: Est1 D 83.4 8.9 0.00019 33.5 9.0 58 124-181 1-62 (278)
307 PF14561 TPR_20: Tetratricopep 83.1 9.7 0.00021 27.2 7.4 41 126-166 9-51 (90)
308 KOG4279 Serine/threonine prote 82.9 6 0.00013 39.4 7.9 65 116-180 254-331 (1226)
309 COG4976 Predicted methyltransf 82.6 2.7 5.9E-05 35.7 4.9 51 118-168 8-60 (287)
310 KOG4279 Serine/threonine prote 82.6 11 0.00024 37.5 9.5 114 136-249 200-330 (1226)
311 cd02680 MIT_calpain7_2 MIT: do 82.5 2.6 5.7E-05 29.0 4.0 32 121-165 3-34 (75)
312 COG4649 Uncharacterized protei 82.2 26 0.00056 28.6 16.7 138 70-213 63-210 (221)
313 KOG0376 Serine-threonine phosp 82.0 2.3 5E-05 39.8 4.7 93 118-212 17-115 (476)
314 KOG3616 Selective LIM binding 81.2 65 0.0014 32.5 16.0 14 183-196 673-686 (1636)
315 KOG3364 Membrane protein invol 80.9 22 0.00047 27.7 8.7 63 136-200 31-100 (149)
316 KOG2114 Vacuolar assembly/sort 80.8 48 0.001 33.7 13.2 58 138-201 369-427 (933)
317 PF04190 DUF410: Protein of un 80.7 38 0.00083 29.6 13.1 26 201-230 88-113 (260)
318 COG3898 Uncharacterized membra 80.3 50 0.0011 30.7 21.2 82 118-200 97-183 (531)
319 KOG4814 Uncharacterized conser 80.0 56 0.0012 32.3 13.0 88 141-234 358-455 (872)
320 KOG1308 Hsp70-interacting prot 79.0 3.3 7.1E-05 37.3 4.4 81 119-201 128-212 (377)
321 COG4976 Predicted methyltransf 78.5 5.6 0.00012 33.8 5.4 65 146-212 4-73 (287)
322 KOG0890 Protein kinase of the 77.7 57 0.0012 37.2 13.7 79 121-201 1645-1732(2382)
323 PF04781 DUF627: Protein of un 76.7 25 0.00055 26.2 7.8 21 144-164 3-23 (111)
324 KOG0890 Protein kinase of the 76.6 81 0.0018 36.1 14.5 136 101-240 1670-1837(2382)
325 cd02680 MIT_calpain7_2 MIT: do 76.4 5 0.00011 27.6 3.8 34 258-304 2-35 (75)
326 PF07720 TPR_3: Tetratricopept 76.4 7.5 0.00016 22.5 4.0 21 139-159 3-23 (36)
327 PF10345 Cohesin_load: Cohesin 75.0 93 0.002 31.0 19.1 27 138-164 60-87 (608)
328 cd02679 MIT_spastin MIT: domai 75.0 6.7 0.00014 27.3 4.2 18 148-165 19-36 (79)
329 PF10579 Rapsyn_N: Rapsyn N-te 74.8 26 0.00055 24.4 7.0 56 141-196 10-68 (80)
330 cd02681 MIT_calpain7_1 MIT: do 74.6 8.1 0.00018 26.7 4.6 19 285-303 16-34 (76)
331 cd02681 MIT_calpain7_1 MIT: do 74.3 5.8 0.00013 27.4 3.8 17 149-165 18-34 (76)
332 PF13041 PPR_2: PPR repeat fam 74.2 12 0.00027 23.0 5.1 39 275-313 3-42 (50)
333 COG3629 DnrI DNA-binding trans 72.1 30 0.00065 30.6 8.6 167 134-304 37-216 (280)
334 cd02677 MIT_SNX15 MIT: domain 71.9 29 0.00064 23.8 7.3 15 289-303 20-34 (75)
335 PF10516 SHNi-TPR: SHNi-TPR; 71.8 7.2 0.00016 22.9 3.2 29 276-304 2-30 (38)
336 PRK13184 pknD serine/threonine 71.2 14 0.00031 38.4 7.3 90 142-235 480-580 (932)
337 KOG0687 26S proteasome regulat 70.8 38 0.00082 30.5 8.7 94 136-235 103-209 (393)
338 PF10516 SHNi-TPR: SHNi-TPR; 70.4 7.7 0.00017 22.8 3.1 25 140-164 4-28 (38)
339 KOG0687 26S proteasome regulat 70.2 63 0.0014 29.2 10.0 92 169-271 104-209 (393)
340 KOG1497 COP9 signalosome, subu 69.2 65 0.0014 29.0 9.8 90 102-196 104-209 (399)
341 cd02683 MIT_1 MIT: domain cont 67.8 10 0.00022 26.2 3.9 17 149-165 18-34 (77)
342 COG3629 DnrI DNA-binding trans 67.6 89 0.0019 27.7 12.5 93 105-199 120-215 (280)
343 PF14561 TPR_20: Tetratricopep 67.3 43 0.00093 23.9 7.9 52 97-152 18-73 (90)
344 KOG3783 Uncharacterized conser 67.2 1.3E+02 0.0027 29.2 18.0 198 136-337 266-519 (546)
345 PF11817 Foie-gras_1: Foie gra 66.3 53 0.0011 28.4 9.0 74 120-195 153-242 (247)
346 PRK13184 pknD serine/threonine 66.1 28 0.0006 36.4 8.1 84 221-304 489-581 (932)
347 KOG2041 WD40 repeat protein [G 66.0 1.5E+02 0.0033 29.8 13.5 130 135-281 690-835 (1189)
348 PF10952 DUF2753: Protein of u 65.4 31 0.00067 26.3 6.2 26 139-164 52-77 (140)
349 PF09613 HrpB1_HrpK: Bacterial 65.0 71 0.0015 25.6 13.6 66 120-187 25-94 (160)
350 PF01535 PPR: PPR repeat; Int 64.6 13 0.00028 19.7 3.3 28 278-305 3-30 (31)
351 PF12753 Nro1: Nuclear pore co 64.1 16 0.00034 33.7 5.3 58 256-313 331-400 (404)
352 COG2909 MalT ATP-dependent tra 64.0 1.8E+02 0.004 30.0 20.6 24 280-303 623-646 (894)
353 PF10345 Cohesin_load: Cohesin 63.9 1.6E+02 0.0035 29.3 19.4 180 119-303 375-605 (608)
354 PF09613 HrpB1_HrpK: Bacterial 63.9 75 0.0016 25.5 13.8 76 138-215 11-90 (160)
355 PF04212 MIT: MIT (microtubule 63.8 17 0.00038 24.2 4.4 26 279-304 9-34 (69)
356 PF12753 Nro1: Nuclear pore co 63.7 18 0.00039 33.4 5.6 15 223-237 378-392 (404)
357 PF09670 Cas_Cas02710: CRISPR- 63.5 1.2E+02 0.0025 28.3 11.2 125 67-200 133-270 (379)
358 cd02677 MIT_SNX15 MIT: domain 63.3 12 0.00026 25.7 3.5 15 151-165 20-34 (75)
359 PF12854 PPR_1: PPR repeat 62.8 19 0.00042 20.2 3.8 27 274-300 6-32 (34)
360 PF15015 NYD-SP12_N: Spermatog 62.3 1.4E+02 0.0031 28.1 11.0 25 142-166 233-257 (569)
361 TIGR02561 HrpB1_HrpK type III 61.8 79 0.0017 25.1 9.0 63 150-214 23-89 (153)
362 cd02678 MIT_VPS4 MIT: domain c 61.5 16 0.00035 25.0 3.9 17 149-165 18-34 (75)
363 PF10952 DUF2753: Protein of u 60.8 42 0.00092 25.6 6.2 57 141-199 5-78 (140)
364 cd02684 MIT_2 MIT: domain cont 60.6 17 0.00036 25.0 3.8 17 149-165 18-34 (75)
365 PF12739 TRAPPC-Trs85: ER-Golg 60.0 1.5E+02 0.0033 27.8 16.0 153 136-304 206-399 (414)
366 COG2256 MGS1 ATPase related to 59.7 1.5E+02 0.0033 27.7 12.6 83 167-249 244-331 (436)
367 PF00244 14-3-3: 14-3-3 protei 59.1 1.2E+02 0.0025 26.1 13.0 47 258-304 141-198 (236)
368 PF04212 MIT: MIT (microtubule 58.9 24 0.00052 23.6 4.4 19 147-165 15-33 (69)
369 KOG0739 AAA+-type ATPase [Post 58.8 64 0.0014 28.9 7.9 15 223-237 7-21 (439)
370 KOG0276 Vesicle coat complex C 58.7 97 0.0021 30.5 9.6 29 201-233 664-692 (794)
371 KOG1839 Uncharacterized protei 58.7 1.3E+02 0.0027 32.5 11.2 94 136-235 972-1085(1236)
372 PF05053 Menin: Menin; InterP 58.1 67 0.0014 31.3 8.4 72 92-165 268-346 (618)
373 TIGR00756 PPR pentatricopeptid 58.0 25 0.00054 18.9 3.8 28 278-305 3-30 (35)
374 smart00745 MIT Microtubule Int 57.9 18 0.0004 24.7 3.8 17 149-165 20-36 (77)
375 KOG1839 Uncharacterized protei 56.4 1.4E+02 0.003 32.2 11.0 151 143-303 938-1127(1236)
376 KOG0985 Vesicle coat protein c 56.3 2.8E+02 0.006 29.6 23.3 72 119-198 1089-1160(1666)
377 cd02684 MIT_2 MIT: domain cont 55.1 33 0.00072 23.5 4.6 20 285-304 16-35 (75)
378 KOG1463 26S proteasome regulat 54.8 1.7E+02 0.0037 26.7 14.6 168 141-312 132-324 (411)
379 KOG0276 Vesicle coat complex C 54.4 1.4E+02 0.0031 29.4 9.9 85 62-165 610-694 (794)
380 smart00745 MIT Microtubule Int 53.8 26 0.00056 23.9 4.0 16 288-303 21-36 (77)
381 cd02682 MIT_AAA_Arch MIT: doma 53.6 25 0.00053 24.2 3.7 25 280-304 11-35 (75)
382 COG5187 RPN7 26S proteasome re 53.2 1.1E+02 0.0023 27.4 8.2 94 136-235 114-220 (412)
383 PF11846 DUF3366: Domain of un 52.9 53 0.0012 27.0 6.5 51 256-306 124-175 (193)
384 PF13041 PPR_2: PPR repeat fam 51.8 40 0.00087 20.5 4.3 28 139-166 5-32 (50)
385 PF04910 Tcf25: Transcriptiona 51.3 2E+02 0.0044 26.5 19.0 30 135-164 38-67 (360)
386 KOG1497 COP9 signalosome, subu 50.8 1.1E+02 0.0025 27.5 8.1 96 118-215 76-192 (399)
387 PF05053 Menin: Menin; InterP 50.5 62 0.0013 31.5 6.9 64 238-303 276-346 (618)
388 PF07079 DUF1347: Protein of u 50.5 2.3E+02 0.0051 27.0 11.5 46 220-270 475-522 (549)
389 PRK10941 hypothetical protein; 50.0 1.2E+02 0.0026 26.7 8.4 57 141-199 185-243 (269)
390 cd02682 MIT_AAA_Arch MIT: doma 49.8 33 0.00072 23.6 3.8 19 147-165 16-34 (75)
391 PF10255 Paf67: RNA polymerase 49.4 26 0.00056 32.7 4.3 58 139-198 124-191 (404)
392 cd02679 MIT_spastin MIT: domai 46.8 43 0.00094 23.3 4.1 51 281-335 14-65 (79)
393 PHA02537 M terminase endonucle 46.5 1.9E+02 0.0041 24.8 9.7 29 278-306 172-209 (230)
394 TIGR02561 HrpB1_HrpK type III 45.5 1.5E+02 0.0033 23.5 9.9 68 119-188 24-95 (153)
395 cd02683 MIT_1 MIT: domain cont 44.8 46 0.001 23.0 4.0 20 285-304 16-35 (77)
396 KOG4521 Nuclear pore complex, 43.2 4.6E+02 0.01 28.4 15.9 78 136-213 919-1009(1480)
397 KOG1811 Predicted Zn2+-binding 43.1 3.5E+02 0.0076 26.9 11.1 75 126-200 570-653 (1141)
398 COG5107 RNA14 Pre-mRNA 3'-end 42.9 3.1E+02 0.0067 26.3 15.3 82 258-339 447-532 (660)
399 PRK15180 Vi polysaccharide bio 42.0 3E+02 0.0065 26.6 9.8 126 65-199 289-419 (831)
400 PF13812 PPR_3: Pentatricopept 40.7 60 0.0013 17.4 4.1 29 277-305 3-31 (34)
401 PF04190 DUF410: Protein of un 40.5 2.5E+02 0.0054 24.5 14.8 27 135-161 88-114 (260)
402 COG5107 RNA14 Pre-mRNA 3'-end 40.0 3.5E+02 0.0075 26.0 17.7 52 108-163 308-359 (660)
403 PF15015 NYD-SP12_N: Spermatog 39.8 3.4E+02 0.0073 25.8 10.3 88 68-159 179-284 (569)
404 PRK10941 hypothetical protein; 39.7 83 0.0018 27.7 5.8 62 241-306 183-246 (269)
405 cd02656 MIT MIT: domain contai 38.8 71 0.0015 21.6 4.3 22 283-304 14-35 (75)
406 KOG0292 Vesicle coat complex C 37.9 2E+02 0.0042 30.0 8.4 43 150-197 656-698 (1202)
407 PRK14700 recombination factor 37.4 1.9E+02 0.0041 25.9 7.6 65 148-212 137-207 (300)
408 KOG0292 Vesicle coat complex C 37.2 2.8E+02 0.006 29.0 9.3 81 119-210 657-737 (1202)
409 KOG2581 26S proteasome regulat 36.9 3.7E+02 0.0079 25.4 10.1 120 75-200 136-276 (493)
410 PF11846 DUF3366: Domain of un 36.5 1.2E+02 0.0025 24.9 6.1 46 121-166 127-173 (193)
411 PF04910 Tcf25: Transcriptiona 35.9 3.5E+02 0.0077 24.9 16.1 139 91-236 32-222 (360)
412 COG3947 Response regulator con 34.9 1.4E+02 0.003 26.8 6.2 54 176-235 286-341 (361)
413 cd02678 MIT_VPS4 MIT: domain c 33.8 94 0.002 21.1 4.2 20 285-304 16-35 (75)
414 PF07219 HemY_N: HemY protein 32.3 1.7E+02 0.0036 21.5 5.7 38 139-176 61-98 (108)
415 PF10255 Paf67: RNA polymerase 32.1 70 0.0015 30.0 4.3 66 99-164 112-191 (404)
416 COG5187 RPN7 26S proteasome re 31.6 1.2E+02 0.0025 27.1 5.2 45 169-215 115-167 (412)
417 COG4259 Uncharacterized protei 30.9 2.2E+02 0.0047 21.0 5.6 48 260-307 54-104 (121)
418 PF11817 Foie-gras_1: Foie gra 30.3 2.8E+02 0.006 23.9 7.6 57 102-162 179-243 (247)
419 KOG1538 Uncharacterized conser 27.2 6.7E+02 0.014 25.4 16.3 54 107-164 638-697 (1081)
420 TIGR02710 CRISPR-associated pr 26.8 4.2E+02 0.0091 24.7 8.3 130 69-200 134-275 (380)
421 KOG1310 WD40 repeat protein [G 25.8 5.6E+02 0.012 25.2 8.9 79 120-200 389-474 (758)
422 PF10579 Rapsyn_N: Rapsyn N-te 25.7 2.4E+02 0.0052 19.7 6.6 46 257-302 20-70 (80)
423 PF07219 HemY_N: HemY protein 25.5 2.5E+02 0.0053 20.6 5.6 37 277-313 61-97 (108)
424 KOG0686 COP9 signalosome, subu 24.4 3.6E+02 0.0078 25.4 7.2 91 138-234 151-256 (466)
425 PF12002 MgsA_C: MgsA AAA+ ATP 24.0 2.8E+02 0.006 22.5 5.9 19 152-170 3-22 (168)
426 PF07079 DUF1347: Protein of u 24.0 6.5E+02 0.014 24.2 18.9 45 258-302 477-522 (549)
427 COG3947 Response regulator con 23.3 2.4E+02 0.0053 25.3 5.7 40 121-160 149-189 (361)
428 smart00386 HAT HAT (Half-A-TPR 22.9 1.3E+02 0.0027 15.6 3.9 12 153-164 3-14 (33)
429 PF02064 MAS20: MAS20 protein 22.9 2.7E+02 0.0058 21.2 5.3 30 141-170 67-97 (121)
430 KOG2062 26S proteasome regulat 22.8 8.5E+02 0.018 25.1 14.3 170 105-287 505-691 (929)
431 PF08969 USP8_dimer: USP8 dime 22.7 1.7E+02 0.0037 21.7 4.3 28 277-304 40-67 (115)
432 PF14852 Fis1_TPR_N: Fis1 N-te 22.1 1.3E+02 0.0029 17.1 2.7 27 241-268 3-29 (35)
433 TIGR00823 EIIA-LAC phosphotran 21.9 2.2E+02 0.0048 20.7 4.5 31 134-164 14-44 (99)
434 TIGR00823 EIIA-LAC phosphotran 21.9 2.5E+02 0.0053 20.5 4.8 38 266-303 8-45 (99)
435 smart00101 14_3_3 14-3-3 homol 21.8 5.3E+02 0.011 22.3 19.3 76 224-304 114-200 (244)
436 COG4259 Uncharacterized protei 21.6 2.4E+02 0.0051 20.8 4.4 25 137-161 72-96 (121)
437 PF09670 Cas_Cas02710: CRISPR- 20.8 6.8E+02 0.015 23.2 14.5 59 142-200 136-198 (379)
438 KOG2581 26S proteasome regulat 20.8 7.2E+02 0.016 23.5 13.6 123 142-274 130-278 (493)
439 KOG2709 Uncharacterized conser 20.5 2.1E+02 0.0046 26.8 5.0 24 279-302 26-49 (560)
440 KOG4563 Cell cycle-regulated h 20.2 1.8E+02 0.0039 26.8 4.4 29 102-134 42-70 (400)
441 KOG4521 Nuclear pore complex, 20.1 1.2E+03 0.025 25.6 11.9 62 205-271 922-991 (1480)
No 1
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.94 E-value=4.2e-25 Score=201.81 Aligned_cols=249 Identities=19% Similarity=0.156 Sum_probs=207.8
Q ss_pred CChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHH
Q 019340 77 TLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKE 154 (342)
Q Consensus 77 ~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~ 154 (342)
.+|+...|+.-+....+.-+. .+.++++||.+|.. .+.++.|+..|.+|+.. +++.++-++|-+|.+.|+++
T Consensus 230 ~~Gei~~aiq~y~eAvkldP~--f~dAYiNLGnV~ke----~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ld 303 (966)
T KOG4626|consen 230 AQGEIWLAIQHYEEAVKLDPN--FLDAYINLGNVYKE----ARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLD 303 (966)
T ss_pred hcchHHHHHHHHHHhhcCCCc--chHHHhhHHHHHHH----HhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHH
Confidence 567777777666555554433 56788888888888 57888888888888886 47788888888888889999
Q ss_pred HHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHH
Q 019340 155 AAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWY 230 (342)
Q Consensus 155 ~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~ 230 (342)
-||..|+++++. ..++|+.|||.++. +.|+..+|..+|.+++.. .++++++|||.+|.+ .+.+++|..+|
T Consensus 304 lAI~~Ykral~~~P~F~~Ay~NlanALk--d~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E----~~~~e~A~~ly 377 (966)
T KOG4626|consen 304 LAIDTYKRALELQPNFPDAYNNLANALK--DKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYRE----QGKIEEATRLY 377 (966)
T ss_pred HHHHHHHHHHhcCCCchHHHhHHHHHHH--hccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHH----hccchHHHHHH
Confidence 999999998765 77999999999998 889999999999998774 689999999999987 66889999999
Q ss_pred HHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCC--HHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCc
Q 019340 231 LRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGH--GKAQLEHGLGLFTEGEMMKAVVYLELATRAGE 306 (342)
Q Consensus 231 ~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~ 306 (342)
++|++. +.+.++.|||.+|.. .| ++++|+.+|+.|+...+ ++++.|+|..|..+|+...|+..|.+|+..++
T Consensus 378 ~~al~v~p~~aaa~nNLa~i~kq-qg---nl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nP 453 (966)
T KOG4626|consen 378 LKALEVFPEFAAAHNNLASIYKQ-QG---NLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINP 453 (966)
T ss_pred HHHHhhChhhhhhhhhHHHHHHh-cc---cHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCc
Confidence 999886 678889999999954 34 89999999999988754 78889999999999999999999999999988
Q ss_pred HHHHHHHHHHHhhcChhcHHHHHHHHHhhhcCCCC
Q 019340 307 TAADHVKNVILQQLSATSRDRAMLVVDSWRAMPSL 341 (342)
Q Consensus 307 ~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 341 (342)
.-|...-.+...+.+.+.+.+|++-+++.+++.|.
T Consensus 454 t~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPD 488 (966)
T KOG4626|consen 454 TFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPD 488 (966)
T ss_pred HHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCC
Confidence 77776666677778889999999999999888774
No 2
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.93 E-value=1.7e-24 Score=197.86 Aligned_cols=247 Identities=18% Similarity=0.105 Sum_probs=198.5
Q ss_pred hhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHH
Q 019340 79 PQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAA 156 (342)
Q Consensus 79 ~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A 156 (342)
|.+.+|..-+...++..+. .+.++.+||-++.. .|+.-.|+.+|++|+.++ .++++++||.+|.+.+.+++|
T Consensus 198 Grl~ea~~cYlkAi~~qp~--fAiawsnLg~~f~~----~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~A 271 (966)
T KOG4626|consen 198 GRLEEAKACYLKAIETQPC--FAIAWSNLGCVFNA----QGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRA 271 (966)
T ss_pred cccchhHHHHHHHHhhCCc--eeeeehhcchHHhh----cchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHH
Confidence 4444454444444444332 45566677777666 588889999999998874 789999999999999999999
Q ss_pred HHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHH--cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHH
Q 019340 157 ISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASI--AGHVRAQYQLALCLHRGRGVDFNLQEAARWYLR 232 (342)
Q Consensus 157 ~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~ 232 (342)
+..|.+|+.. +++.++-|||.+|+ +.|+.+-||..|+++++ +..++|+.|||..+.+ .++..+|+.+|.+
T Consensus 272 vs~Y~rAl~lrpn~A~a~gNla~iYy--eqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd----~G~V~ea~~cYnk 345 (966)
T KOG4626|consen 272 VSCYLRALNLRPNHAVAHGNLACIYY--EQGLLDLAIDTYKRALELQPNFPDAYNNLANALKD----KGSVTEAVDCYNK 345 (966)
T ss_pred HHHHHHHHhcCCcchhhccceEEEEe--ccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHh----ccchHHHHHHHHH
Confidence 9999999866 77889999999999 89999999999999887 4689999999999987 6788999999999
Q ss_pred HHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCcHH
Q 019340 233 AAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETA 308 (342)
Q Consensus 233 A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~~ 308 (342)
|+.. .++++++|||.+|... | ..++|..+|+++++- +-+.++.|||.+|.++|++++|+.+|+.|+++.+..
T Consensus 346 aL~l~p~hadam~NLgni~~E~-~---~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~f 421 (966)
T KOG4626|consen 346 ALRLCPNHADAMNNLGNIYREQ-G---KIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTF 421 (966)
T ss_pred HHHhCCccHHHHHHHHHHHHHh-c---cchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchH
Confidence 9887 6899999999999652 2 899999999999886 557888999999999999999999999999998766
Q ss_pred HHHHHHHHHhhcChhcHHHHHHHHHhhhcCCCC
Q 019340 309 ADHVKNVILQQLSATSRDRAMLVVDSWRAMPSL 341 (342)
Q Consensus 309 a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 341 (342)
|..+..+...+-+.++...|+..+.+.....|+
T Consensus 422 Ada~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt 454 (966)
T KOG4626|consen 422 ADALSNMGNTYKEMGDVSAAIQCYTRAIQINPT 454 (966)
T ss_pred HHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcH
Confidence 655555555555558888888877776555553
No 3
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.90 E-value=9.7e-22 Score=188.92 Aligned_cols=237 Identities=27% Similarity=0.350 Sum_probs=206.7
Q ss_pred HHHHHHHHhCcCCCHHHHHHHHHHHHcC-CCCcCCHHHHHHHHHHHHh-------CCCHHHHHHHHHHHhcCC-----CH
Q 019340 87 VCKSWNDALRPLREAMVLLRWGKRFKHG-RGVRKNLDKALDSFLKGAA-------RGSTLAMVDAGLMYWEMD-----KK 153 (342)
Q Consensus 87 ~~~~~~~~~~~~~~a~a~~~lg~~y~~g-~g~~~~~~~A~~~~~~A~~-------~~~~~a~~~lg~~~~~~~-----~~ 153 (342)
....|.+..++.++..+++.+|.||..| .|+.+|.++|+.+|+.++. .+++.+++.+|.+|..+. |.
T Consensus 230 ~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~ 309 (552)
T KOG1550|consen 230 EAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDY 309 (552)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccH
Confidence 3467899999999999999999999999 7999999999999999998 789999999999999873 78
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHcCC-ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHH
Q 019340 154 EAAISLYRQAAVLGDPAGQFNLGISYLQAQ-PANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLR 232 (342)
Q Consensus 154 ~~A~~~~~~a~~~~~~~a~~~Lg~~~~~g~-~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~ 232 (342)
+.|+.+|.++++.+++++++.||.+|..|. ..|+.+|.+||..|++.|+..|+++++.||..|.|+..+..+|+.||++
T Consensus 310 ~~A~~~~~~aA~~g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~ 389 (552)
T KOG1550|consen 310 EKALKLYTKAAELGNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKK 389 (552)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHH
Confidence 999999999999999999999999999887 5789999999999999999999999999999999999999999999999
Q ss_pred HHHCCCHHHHHHHHHHHHcCCC---------------------------------------CcccHHHHHHHHHHHHHcC
Q 019340 233 AAEGGYVRAMYNTSLCYSFGEG---------------------------------------LPLSHRQARKWMKRAADCG 273 (342)
Q Consensus 233 A~~~~~~~a~~~lg~~y~~g~g---------------------------------------~~~~~~~A~~~~~~a~~~~ 273 (342)
+++.+.+.|++.++.++..|.+ +..+...+...+.++...+
T Consensus 390 aA~~g~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g 469 (552)
T KOG1550|consen 390 AAEKGNPSAAYLLGAFYEYGVGRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAAQG 469 (552)
T ss_pred HHHccChhhHHHHHHHHHHccccccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccchhHHHHHHHHHHhcc
Confidence 9999999999999988876652 1124444555555555566
Q ss_pred CHHHHHHHHHHhhhc----CCHHHHHHHHHHHHHcCcHHHHHHHHHHHhhcChhc
Q 019340 274 HGKAQLEHGLGLFTE----GEMMKAVVYLELATRAGETAADHVKNVILQQLSATS 324 (342)
Q Consensus 274 ~~~a~~~Lg~~~~~~----~~~~~A~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~ 324 (342)
+..+...||..|+.- .+++.|..+|.+|.+.+ ..+..+++.+..+..+-.
T Consensus 470 ~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~-~~~~~nlg~~~e~g~g~~ 523 (552)
T KOG1550|consen 470 NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG-AQALFNLGYMHEHGEGIK 523 (552)
T ss_pred CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh-hHHHhhhhhHHhcCcCcc
Confidence 677778888877653 47999999999999888 888888888888876554
No 4
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=99.89 E-value=9.1e-21 Score=169.47 Aligned_cols=202 Identities=31% Similarity=0.411 Sum_probs=171.4
Q ss_pred CCCCcCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcC----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcC--CccCH
Q 019340 114 GRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEM----DKKEAAISLYRQAAVLGDPAGQFNLGISYLQA--QPANA 187 (342)
Q Consensus 114 g~g~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~----~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~g--~~~~~ 187 (342)
+.....++..|+.++.++...+++.+++.++.+|..+ .|..+|+.||+++++.+++.++++||.+|..| +..|+
T Consensus 50 ~~~~~~~~~~a~~~~~~a~~~~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~~~a~~~lg~~~~~G~gv~~d~ 129 (292)
T COG0790 50 GSAYPPDYAKALKSYEKAAELGDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGLAEALFNLGLMYANGRGVPLDL 129 (292)
T ss_pred cccccccHHHHHHHHHHhhhcCChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcccHHHHHhHHHHHhcCCCcccCH
Confidence 3356788888999999988888888888888888776 57888999999888889999999999998874 47789
Q ss_pred HHHHHHHHHHHHcCCHHH---HHHHHHHHhcC---CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCcccHHH
Q 019340 188 EEAVKLLYQASIAGHVRA---QYQLALCLHRG---RGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQ 261 (342)
Q Consensus 188 ~~A~~~~~~a~~~~~~~a---~~~lg~~~~~g---~~~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~y~~g~g~~~~~~~ 261 (342)
.+|..||+++++.|++.+ ++.||.+|..| .++..+...|+.+|.+|...+++.++++||.+|..|.|+++|..+
T Consensus 130 ~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~~~~a~~~lg~~y~~G~Gv~~d~~~ 209 (292)
T COG0790 130 VKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELGNPDAQLLLGRMYEKGLGVPRDLKK 209 (292)
T ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCcCHHH
Confidence 999999999999998888 89999999888 667777788999999999999999999999999889889999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhhhcC---------------CHHHHHHHHHHHHHcCcHHHHHHHHHH
Q 019340 262 ARKWMKRAADCGHGKAQLEHGLGLFTEG---------------EMMKAVVYLELATRAGETAADHVKNVI 316 (342)
Q Consensus 262 A~~~~~~a~~~~~~~a~~~Lg~~~~~~~---------------~~~~A~~~~~~a~~~~~~~a~~~~~~~ 316 (342)
|..||++|++.++..++++++ ++...| +...|..|+.++...+...++..+..+
T Consensus 210 A~~wy~~Aa~~g~~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 278 (292)
T COG0790 210 AFRWYKKAAEQGDGAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDNACEALRAL 278 (292)
T ss_pred HHHHHHHHHHCCCHHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChhHHHHHHHH
Confidence 999999999988888888888 455443 888899999999999888887766533
No 5
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.89 E-value=2.8e-21 Score=165.03 Aligned_cols=302 Identities=16% Similarity=0.100 Sum_probs=188.9
Q ss_pred cccccccccCCCChhhHHHHHHhhhhhcccccccccccCCCCCCCCCCcHHHHHHHHh------------hCCChhHHhh
Q 019340 17 ALQFPITEKDNRRPELTASARKARIKRRSRFSCSRSIKSTEGHDFASLPFDVLNKIAA------------SFTLPQLRAA 84 (342)
Q Consensus 17 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~a 84 (342)
..+++++.+. .+|..+.|.|.+|+++.|+-.. +.++|.++++..++++++ .|...|.+.+
T Consensus 127 A~rt~rta~t-ar~~~S~sgr~~RlgtaSmaa~-------~dG~f~nlsRLN~tkYa~~p~l~kaLFey~fyhenDv~~a 198 (478)
T KOG1129|consen 127 ARRTTRTART-ARSLGSRSGRASRLGTASMAAF-------NDGKFYNLSRLNPTKYAERPTLVKALFEYLFYHENDVQKA 198 (478)
T ss_pred hccCcccccc-ccccccccchhhhhhhhhhhcc-------CCcceeehhhcCchhhccChHHHHHHHHHHHHhhhhHHHH
Confidence 4555555554 7777888899999988887653 334555555444444332 2344555566
Q ss_pred HHHHHHHHHH--h------CcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC-CCHHHHHHHHHHHhcCCCHHH
Q 019340 85 SLVCKSWNDA--L------RPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR-GSTLAMVDAGLMYWEMDKKEA 155 (342)
Q Consensus 85 ~~~~~~~~~~--~------~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~-~~~~a~~~lg~~~~~~~~~~~ 155 (342)
..+|+..... . ..+.++++..++|.||.+ .+-+.+|...++.+++. .+++....|+.+|.+...++.
T Consensus 199 H~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylr----Lgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~ 274 (478)
T KOG1129|consen 199 HSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLR----LGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPER 274 (478)
T ss_pred HHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHH----hcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHH
Confidence 5555443322 1 223477899999999999 35667777778877775 467777777777777777777
Q ss_pred HHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHcC--CHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Q 019340 156 AISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIAG--HVRAQYQLALCLHRGRGVDFNLQEAARWYL 231 (342)
Q Consensus 156 A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~ 231 (342)
|+..|...++. ++..-....+.++. ..+++++|+++|+.+++.. +.++..-+|.-|++ .++.+.|..+|+
T Consensus 275 AL~~~~~gld~fP~~VT~l~g~ARi~e--am~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY----~~~PE~AlryYR 348 (478)
T KOG1129|consen 275 ALLVIGEGLDSFPFDVTYLLGQARIHE--AMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFY----DNNPEMALRYYR 348 (478)
T ss_pred HHHHHhhhhhcCCchhhhhhhhHHHHH--HHHhHHHHHHHHHHHHhcCCccceeeeeeeecccc----CCChHHHHHHHH
Confidence 77777776665 33444444445555 6666777777777766643 55555555555555 446667777777
Q ss_pred HHHHCC--CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc-----CCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHc
Q 019340 232 RAAEGG--YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC-----GHGKAQLEHGLGLFTEGEMMKAVVYLELATRA 304 (342)
Q Consensus 232 ~A~~~~--~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~-----~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~ 304 (342)
+.+..| ++.-..|+|.|...+. .++.++..|++|+.. .-++.|||||.+....||+..|..+|+.++-.
T Consensus 349 RiLqmG~~speLf~NigLCC~yaq----Q~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~ 424 (478)
T KOG1129|consen 349 RILQMGAQSPELFCNIGLCCLYAQ----QIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTS 424 (478)
T ss_pred HHHHhcCCChHHHhhHHHHHHhhc----chhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhcc
Confidence 776664 5666667777665533 666677777776543 11455677777777777777777777777666
Q ss_pred CcHHHHHHHHHHHhhcChhcHHHHHHHHHhhhcCCC
Q 019340 305 GETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPS 340 (342)
Q Consensus 305 ~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 340 (342)
++.++..+.++.......+++++|+.+++......|
T Consensus 425 d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P 460 (478)
T KOG1129|consen 425 DAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMP 460 (478)
T ss_pred CcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCc
Confidence 555555544444445566667777666666655554
No 6
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=99.89 E-value=1e-20 Score=169.10 Aligned_cols=202 Identities=31% Similarity=0.446 Sum_probs=181.1
Q ss_pred CChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcC----CC
Q 019340 77 TLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEM----DK 152 (342)
Q Consensus 77 ~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~----~~ 152 (342)
..+++..+. .+....+..+++.+++.+|.+|..|.|+.+|.++|+.||+++++.|++.++++||.+|..+ .|
T Consensus 53 ~~~~~~~a~----~~~~~a~~~~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~~~a~~~lg~~~~~G~gv~~d 128 (292)
T COG0790 53 YPPDYAKAL----KSYEKAAELGDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGLAEALFNLGLMYANGRGVPLD 128 (292)
T ss_pred ccccHHHHH----HHHHHhhhcCChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcccHHHHHhHHHHHhcCCCcccC
Confidence 445555553 4556666677889999999999999999999999999999999999999999999999985 49
Q ss_pred HHHHHHHHHHHHhCCCHHH---HHHHHHHHHcC---C--ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCCCHH
Q 019340 153 KEAAISLYRQAAVLGDPAG---QFNLGISYLQA---Q--PANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQ 224 (342)
Q Consensus 153 ~~~A~~~~~~a~~~~~~~a---~~~Lg~~~~~g---~--~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~ 224 (342)
..+|..||++|++.|++.+ ++.||.+|..| . ..+...|+.+|.++...+++.++++||.+|..|.|++.|..
T Consensus 129 ~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~~~~a~~~lg~~y~~G~Gv~~d~~ 208 (292)
T COG0790 129 LVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELGNPDAQLLLGRMYEKGLGVPRDLK 208 (292)
T ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCcCHH
Confidence 9999999999999999999 99999999977 2 33556999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCcc----------cHHHHHHHHHHHHHcCCHHHHHHHH
Q 019340 225 EAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPL----------SHRQARKWMKRAADCGHGKAQLEHG 282 (342)
Q Consensus 225 ~A~~~~~~A~~~~~~~a~~~lg~~y~~g~g~~~----------~~~~A~~~~~~a~~~~~~~a~~~Lg 282 (342)
+|+.||.+|++.++..+++.++.+|..|.|++. +...|..|+.++...+...++..+-
T Consensus 209 ~A~~wy~~Aa~~g~~~a~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 276 (292)
T COG0790 209 KAFRWYKKAAEQGDGAACYNLGLMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDNACEALR 276 (292)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChhHHHHHH
Confidence 999999999999999999999988888888776 9999999999999998887775544
No 7
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.85 E-value=1.4e-19 Score=173.97 Aligned_cols=229 Identities=26% Similarity=0.337 Sum_probs=201.6
Q ss_pred HHHHhCcCCCHHHHHHHH------HHHHcCCCCcCC----HHHHHHHHHHHHhCCCHHHHHHHHHHHhcC-----CCHHH
Q 019340 91 WNDALRPLREAMVLLRWG------KRFKHGRGVRKN----LDKALDSFLKGAARGSTLAMVDAGLMYWEM-----DKKEA 155 (342)
Q Consensus 91 ~~~~~~~~~~a~a~~~lg------~~y~~g~g~~~~----~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~-----~~~~~ 155 (342)
.....+........+.+| .++..|.+...+ ...|+.+|+.+++.|+..+++.+|.+|..+ +|+++
T Consensus 188 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~ 267 (552)
T KOG1550|consen 188 HYNKAASSTSSDATFSLGPNAQRLQLSLEGEGNERNESGELSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLES 267 (552)
T ss_pred hhhhccCccccccccCCCcchhhhhccccccCcccccchhhhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHH
Confidence 444455545555555556 677777776666 688999999999999999999999999987 69999
Q ss_pred HHHHHHHHHh-------CCCHHHHHHHHHHHHcC--Ccc-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCCCHHH
Q 019340 156 AISLYRQAAV-------LGDPAGQFNLGISYLQA--QPA-NAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQE 225 (342)
Q Consensus 156 A~~~~~~a~~-------~~~~~a~~~Lg~~~~~g--~~~-~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~ 225 (342)
|+.+|+.+++ .+++.+++.||.+|..| ... |+.+|+.+|.++++.+++++++.||.||..|. ..+|..+
T Consensus 268 a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~~a~~~lg~~~~~g~-~~~d~~~ 346 (552)
T KOG1550|consen 268 AIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGNPDAQYLLGVLYETGT-KERDYRR 346 (552)
T ss_pred HHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCCchHHHHHHHHHHcCC-ccccHHH
Confidence 9999999988 79999999999999975 355 89999999999999999999999999999987 4589999
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHhhhc-CCHHHHHHHHHHHHHc
Q 019340 226 AARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHGLGLFTE-GEMMKAVVYLELATRA 304 (342)
Q Consensus 226 A~~~~~~A~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~~-~~~~~A~~~~~~a~~~ 304 (342)
|.+||..|+..|+..|+++++.||..|.|++++..+|..||+++++.+++.+.+.++..+... +.+..+.-++....+.
T Consensus 347 A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~ 426 (552)
T KOG1550|consen 347 AFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKGNPSAAYLLGAFYEYGVGRYDTALALYLYLAEL 426 (552)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHccChhhHHHHHHHHHHccccccHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999998877654 8899999999999999
Q ss_pred CcHHHHHHHHHHHhhc
Q 019340 305 GETAADHVKNVILQQL 320 (342)
Q Consensus 305 ~~~~a~~~~~~~~~~~ 320 (342)
+...++.+...+....
T Consensus 427 g~~~~q~~a~~l~~~~ 442 (552)
T KOG1550|consen 427 GYEVAQSNAAYLLDQS 442 (552)
T ss_pred hhhHHhhHHHHHHHhc
Confidence 9888888777666555
No 8
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.84 E-value=7.2e-18 Score=165.76 Aligned_cols=87 Identities=8% Similarity=0.003 Sum_probs=71.8
Q ss_pred HHHHhhCCChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC--CHHHHHHHHHHH
Q 019340 70 NKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMY 147 (342)
Q Consensus 70 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~ 147 (342)
.++...+..+++.+|...+.+.++..+ ++..++++|.+|.. .+++++|+..+.++++.+ +..+++.+|.+|
T Consensus 132 ~~G~~~~~~~~~~~Ai~~y~~al~~~p---~~~~~~n~a~~~~~----l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~ 204 (615)
T TIGR00990 132 EKGNKAYRNKDFNKAIKLYSKAIECKP---DPVYYSNRAACHNA----LGDWEKVVEDTTAALELDPDYSKALNRRANAY 204 (615)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCC---chHHHHHHHHHHHH----hCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 344557888999999988877776543 57789999999998 589999999999999874 788999999999
Q ss_pred hcCCCHHHHHHHHHHH
Q 019340 148 WEMDKKEAAISLYRQA 163 (342)
Q Consensus 148 ~~~~~~~~A~~~~~~a 163 (342)
...|++++|+..|..+
T Consensus 205 ~~lg~~~eA~~~~~~~ 220 (615)
T TIGR00990 205 DGLGKYADALLDLTAS 220 (615)
T ss_pred HHcCCHHHHHHHHHHH
Confidence 9999998887655443
No 9
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.83 E-value=8.4e-18 Score=165.28 Aligned_cols=249 Identities=13% Similarity=0.033 Sum_probs=195.1
Q ss_pred ChhHHhhHHHHHHHHHHhC-cCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHH
Q 019340 78 LPQLRAASLVCKSWNDALR-PLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKE 154 (342)
Q Consensus 78 ~~~~~~a~~~~~~~~~~~~-~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~ 154 (342)
.+.+.+|...+...++... ....+.+++.+|.++.. .+++++|+..|+++++.. +..+++.+|.++...|+++
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~----~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~ 382 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCL----KGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPD 382 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHH
Confidence 3566777766666655431 23467788999999987 589999999999998864 6788899999999999999
Q ss_pred HHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHH
Q 019340 155 AAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWY 230 (342)
Q Consensus 155 ~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~ 230 (342)
+|+..|+++++. +++.+++++|.++. ..+++++|+.+|+++++. ++..++.++|.++.. .+++++|+..|
T Consensus 383 eA~~~~~~al~~~p~~~~~~~~lg~~~~--~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~----~g~~~eA~~~~ 456 (615)
T TIGR00990 383 KAEEDFDKALKLNSEDPDIYYHRAQLHF--IKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYK----EGSIASSMATF 456 (615)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHH----CCCHHHHHHHH
Confidence 999999998865 67899999999999 889999999999998875 578889999999987 77899999999
Q ss_pred HHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCCH--H------HHHHHHH-HhhhcCCHHHHHHHHH
Q 019340 231 LRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHG--K------AQLEHGL-GLFTEGEMMKAVVYLE 299 (342)
Q Consensus 231 ~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~--~------a~~~Lg~-~~~~~~~~~~A~~~~~ 299 (342)
++++.. .++.+++.+|.++.. .| ++++|+..|++++...+. . .+.+.+. ++...|++++|..+|+
T Consensus 457 ~~al~~~P~~~~~~~~lg~~~~~-~g---~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~ 532 (615)
T TIGR00990 457 RRCKKNFPEAPDVYNYYGELLLD-QN---KFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCE 532 (615)
T ss_pred HHHHHhCCCChHHHHHHHHHHHH-cc---CHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 999875 578889999999965 33 899999999999876321 1 1223333 3344689999999999
Q ss_pred HHHHcCcHHHHHHHHHHHhhcChhcHHHHHHHHHhhhcCCC
Q 019340 300 LATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPS 340 (342)
Q Consensus 300 ~a~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 340 (342)
+++..++........+...+...++.++|...+++..+..+
T Consensus 533 kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~ 573 (615)
T TIGR00990 533 KALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELAR 573 (615)
T ss_pred HHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhc
Confidence 99988766655555666666777888888888877655543
No 10
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=2.7e-17 Score=146.59 Aligned_cols=230 Identities=21% Similarity=0.161 Sum_probs=186.1
Q ss_pred CCCCcHHHHHHHHhhCCChhHHhhHHHHHHHHHHhCcC-CCHH----HHH---------------------------HHH
Q 019340 61 FASLPFDVLNKIAASFTLPQLRAASLVCKSWNDALRPL-REAM----VLL---------------------------RWG 108 (342)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~a~----a~~---------------------------~lg 108 (342)
|...+.-.-..+...+...|+++|...+....+..+-- ++-+ ++| .+|
T Consensus 258 f~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIa 337 (559)
T KOG1155|consen 258 FPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIA 337 (559)
T ss_pred CCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeeh
Confidence 44434444444555678888888888887777664321 1111 111 133
Q ss_pred HHHHcCCCCcCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCc
Q 019340 109 KRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQP 184 (342)
Q Consensus 109 ~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~ 184 (342)
..|.- +++.++|+.+|++|++++ ...+|.-+|.-|.++++...|+..|++|++. .|-.|||.||.+|. ..
T Consensus 338 NYYSl----r~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYe--im 411 (559)
T KOG1155|consen 338 NYYSL----RSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYE--IM 411 (559)
T ss_pred hHHHH----HHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHH--Hh
Confidence 33333 688999999999999985 7789999999999999999999999999987 56789999999999 89
Q ss_pred cCHHHHHHHHHHHHH--cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCCH--HHHHHHHHHHHcCCCCcccHH
Q 019340 185 ANAEEAVKLLYQASI--AGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYV--RAMYNTSLCYSFGEGLPLSHR 260 (342)
Q Consensus 185 ~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~~~~--~a~~~lg~~y~~g~g~~~~~~ 260 (342)
+.+.-|+-||++|++ +.++..+..||.||.. ..++++|+.+|.+|+..++. .+++.||.+|.+ .++..
T Consensus 412 ~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~k----l~~~~eAiKCykrai~~~dte~~~l~~LakLye~----l~d~~ 483 (559)
T KOG1155|consen 412 KMHFYALYYFQKALELKPNDSRLWVALGECYEK----LNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEE----LKDLN 483 (559)
T ss_pred cchHHHHHHHHHHHhcCCCchHHHHHHHHHHHH----hccHHHHHHHHHHHHhccccchHHHHHHHHHHHH----HHhHH
Confidence 999999999999977 5799999999999987 78999999999999999877 899999999976 44999
Q ss_pred HHHHHHHHHHHc-------CC--HHHHHHHHHHhhhcCCHHHHHHHHHHHHHc
Q 019340 261 QARKWMKRAADC-------GH--GKAQLEHGLGLFTEGEMMKAVVYLELATRA 304 (342)
Q Consensus 261 ~A~~~~~~a~~~-------~~--~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~ 304 (342)
+|..+|++.++. ++ ..+...|+.-+...+++++|..|..+++..
T Consensus 484 eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 484 EAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG 536 (559)
T ss_pred HHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC
Confidence 999999999872 22 467778999999999999999988877755
No 11
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.81 E-value=6.3e-17 Score=159.32 Aligned_cols=83 Identities=19% Similarity=0.020 Sum_probs=44.6
Q ss_pred CCChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCH
Q 019340 76 FTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKK 153 (342)
Q Consensus 76 ~~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~ 153 (342)
+..|++.+|...+..+.+..++ ++.+++.+|.++.. .+++++|+..|++++.. +++.++..+|.++...|++
T Consensus 87 l~~g~~~~A~~~l~~~l~~~P~--~~~a~~~la~~l~~----~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~ 160 (656)
T PRK15174 87 LASSQPDAVLQVVNKLLAVNVC--QPEDVLLVASVLLK----SKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKE 160 (656)
T ss_pred hhcCCHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCh
Confidence 3455555555555555554433 44555555555555 35555555555555553 3455555555555555555
Q ss_pred HHHHHHHHHHH
Q 019340 154 EAAISLYRQAA 164 (342)
Q Consensus 154 ~~A~~~~~~a~ 164 (342)
++|+..+++++
T Consensus 161 ~eA~~~~~~~~ 171 (656)
T PRK15174 161 LQAISLARTQA 171 (656)
T ss_pred HHHHHHHHHHH
Confidence 55555555443
No 12
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.80 E-value=8.7e-17 Score=158.34 Aligned_cols=263 Identities=13% Similarity=-0.027 Sum_probs=205.8
Q ss_pred HHHHHHHhhCCChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHH
Q 019340 67 DVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAG 144 (342)
Q Consensus 67 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg 144 (342)
.++.-+..++..|++.+|..++.......+. ++.+++.||.+... .+++++|+..|++++.. +++.++..+|
T Consensus 44 ~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~--~~~~l~~l~~~~l~----~g~~~~A~~~l~~~l~~~P~~~~a~~~la 117 (656)
T PRK15174 44 NIILFAIACLRKDETDVGLTLLSDRVLTAKN--GRDLLRRWVISPLA----SSQPDAVLQVVNKLLAVNVCQPEDVLLVA 117 (656)
T ss_pred CHHHHHHHHHhcCCcchhHHHhHHHHHhCCC--chhHHHHHhhhHhh----cCCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 3455566778999999999999888877766 88999999998887 69999999999999986 5899999999
Q ss_pred HHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHH--cCCHHHHHHHHHHHhcCC---
Q 019340 145 LMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASI--AGHVRAQYQLALCLHRGR--- 217 (342)
Q Consensus 145 ~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~--- 217 (342)
.++...|++++|+..|++++.. +++.++..+|.++. ..+++++|+..+++++. ++++.++..++..+..|.
T Consensus 118 ~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~--~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~~l~~~g~~~e 195 (656)
T PRK15174 118 SVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLV--LMDKELQAISLARTQAQEVPPRGDMIATCLSFLNKSRLPE 195 (656)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH--HCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999999874 78999999999999 88899999999987654 345555544433222111
Q ss_pred ------------C---------------CCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHH----HHHH
Q 019340 218 ------------G---------------VDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHR----QARK 264 (342)
Q Consensus 218 ------------~---------------~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~----~A~~ 264 (342)
. ..+++++|+..|++++.. +++.+++++|.+|... | +++ +|+.
T Consensus 196 A~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~-G---~~~eA~~~A~~ 271 (656)
T PRK15174 196 DHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQS-G---RSREAKLQAAE 271 (656)
T ss_pred HHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc-C---CchhhHHHHHH
Confidence 0 045677777777777765 4677888888888552 2 444 4889
Q ss_pred HHHHHHHc--CCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCcHHHHHHHHHHHhhcChhcHHHHHHHHHhhhcCCCC
Q 019340 265 WMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPSL 341 (342)
Q Consensus 265 ~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 341 (342)
+|++++.. +++.++.++|.++...|++++|+.+|+++++..+.+..........+...++.++|...+++.....|.
T Consensus 272 ~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~ 350 (656)
T PRK15174 272 HWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGV 350 (656)
T ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence 99998875 567888899999999999999999999998886655544444455555668889999988888776664
No 13
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.79 E-value=1.8e-16 Score=147.41 Aligned_cols=252 Identities=15% Similarity=0.019 Sum_probs=166.9
Q ss_pred HHhhCCChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCCC------HHHHHHHHH
Q 019340 72 IAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGS------TLAMVDAGL 145 (342)
Q Consensus 72 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~------~~a~~~lg~ 145 (342)
+...+..+++.+|...+.+..+..+ .++.+++.+|.+|.. .+++++|+..+++++...+ ..++..+|.
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~ 115 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVDP--ETVELHLALGNLFRR----RGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQ 115 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcCc--ccHHHHHHHHHHHHH----cCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 3444566777777777776666543 356777777877776 4778888888877776531 245677788
Q ss_pred HHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHcC--C-----HHHHHHHHHHHhcC
Q 019340 146 MYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIAG--H-----VRAQYQLALCLHRG 216 (342)
Q Consensus 146 ~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~~--~-----~~a~~~lg~~~~~g 216 (342)
+|...|++++|+.+|+++++. .+..++..++.++. ..+++++|+..|+++++.+ + ...+..+|.++..
T Consensus 116 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~- 192 (389)
T PRK11788 116 DYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQ--QEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALA- 192 (389)
T ss_pred HHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHH--HhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHh-
Confidence 887778888888888887764 44567777777777 6777777777777776643 1 1234566666665
Q ss_pred CCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCC---HHHHHHHHHHhhhcCCH
Q 019340 217 RGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGH---GKAQLEHGLGLFTEGEM 291 (342)
Q Consensus 217 ~~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~---~~a~~~Lg~~~~~~~~~ 291 (342)
.+++++|+.+|+++++. .+..+++.+|.+|.. .| ++++|+.+|+++...++ ...+..|+.+|...|++
T Consensus 193 ---~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g---~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~ 265 (389)
T PRK11788 193 ---RGDLDAARALLKKALAADPQCVRASILLGDLALA-QG---DYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDE 265 (389)
T ss_pred ---CCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHH-CC---CHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCH
Confidence 56777777777777654 356677777777754 22 77777777777776532 24456777777777777
Q ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHhhcChhcHHHHHHHHHhhhcCCC
Q 019340 292 MKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPS 340 (342)
Q Consensus 292 ~~A~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 340 (342)
++|..+++++.+..+..... ..........++.++|..++++..+..|
T Consensus 266 ~~A~~~l~~~~~~~p~~~~~-~~la~~~~~~g~~~~A~~~l~~~l~~~P 313 (389)
T PRK11788 266 AEGLEFLRRALEEYPGADLL-LALAQLLEEQEGPEAAQALLREQLRRHP 313 (389)
T ss_pred HHHHHHHHHHHHhCCCchHH-HHHHHHHHHhCCHHHHHHHHHHHHHhCc
Confidence 77777777777665433222 3344444555677777777776655554
No 14
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.78 E-value=3.1e-16 Score=163.95 Aligned_cols=257 Identities=18% Similarity=0.091 Sum_probs=178.9
Q ss_pred HHhhCCChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC--CHH-----------
Q 019340 72 IAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STL----------- 138 (342)
Q Consensus 72 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~----------- 138 (342)
....+..|++.+|...+.+.++..++ ++.+++.||.+|.. .+++++|+.+|+++++.. +..
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~P~--~~~a~~~Lg~~~~~----~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~ 349 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRANPK--DSEALGALGQAYSQ----QGDRARAVAQFEKALALDPHSSNRDKWESLLKVN 349 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhh
Confidence 34456778999999888888877554 78899999999988 589999999999998753 111
Q ss_pred ---HHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHH--cCCHHHHHHHHH
Q 019340 139 ---AMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASI--AGHVRAQYQLAL 211 (342)
Q Consensus 139 ---a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~ 211 (342)
....+|.++...|++++|+.+|+++++. +++.+++.||.++. ..+++++|+.+|+++++ +++..++..++.
T Consensus 350 ~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~--~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~ 427 (1157)
T PRK11447 350 RYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAM--ARKDYAAAERYYQQALRMDPGNTNAVRGLAN 427 (1157)
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH--HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 1234577777788888888888887755 66777888888887 77788888888888776 346666666666
Q ss_pred HHhcCC--------------------------------------CCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHc
Q 019340 212 CLHRGR--------------------------------------GVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSF 251 (342)
Q Consensus 212 ~~~~g~--------------------------------------~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~ 251 (342)
+|..+. ...+++++|+.+|++++.. +++.+++.+|.+|..
T Consensus 428 l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~ 507 (1157)
T PRK11447 428 LYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQ 507 (1157)
T ss_pred HHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 553210 0135677777777777765 466777777777754
Q ss_pred CCCCcccHHHHHHHHHHHHHc--CCH------------------------------------------------------
Q 019340 252 GEGLPLSHRQARKWMKRAADC--GHG------------------------------------------------------ 275 (342)
Q Consensus 252 g~g~~~~~~~A~~~~~~a~~~--~~~------------------------------------------------------ 275 (342)
.| ++++|+..|+++++. +++
T Consensus 508 -~G---~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l 583 (1157)
T PRK11447 508 -AG---QRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRL 583 (1157)
T ss_pred -cC---CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHH
Confidence 22 677777776666543 222
Q ss_pred --------------------HHHHHHHHHhhhcCCHHHHHHHHHHHHHcCcHHHHHHHHHHHhhcChhcHHHHHHHHHhh
Q 019340 276 --------------------KAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSW 335 (342)
Q Consensus 276 --------------------~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~ 335 (342)
..++.||.++...|++++|+.+|+++++..+.+....+.+...+...++.++|++.++.+
T Consensus 584 ~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~l 663 (1157)
T PRK11447 584 RDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKL 663 (1157)
T ss_pred HHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 234556777777788888888888888776555555555555556667788888877777
Q ss_pred hcCCC
Q 019340 336 RAMPS 340 (342)
Q Consensus 336 ~~~~~ 340 (342)
.+..|
T Consensus 664 l~~~p 668 (1157)
T PRK11447 664 PATAN 668 (1157)
T ss_pred hccCC
Confidence 66554
No 15
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.77 E-value=4.1e-16 Score=163.10 Aligned_cols=249 Identities=15% Similarity=0.058 Sum_probs=192.1
Q ss_pred HhhCCChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHH-----
Q 019340 73 AASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGL----- 145 (342)
Q Consensus 73 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~----- 145 (342)
...+..+++.+|...+.+..+..+. ++.+++.||.+|.. .+++++|+.+|+++++. ++..++..++.
T Consensus 359 ~~~~~~g~~~eA~~~~~~Al~~~P~--~~~a~~~Lg~~~~~----~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~ 432 (1157)
T PRK11447 359 DAALKANNLAQAERLYQQARQVDNT--DSYAVLGLGDVAMA----RKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQ 432 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 3445778889999888888877654 78899999999998 58999999999999985 35555554444
Q ss_pred -------------------------------------HHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccC
Q 019340 146 -------------------------------------MYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPAN 186 (342)
Q Consensus 146 -------------------------------------~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~ 186 (342)
++...|++++|+.+|+++++. +++.+++.+|.+|. ..++
T Consensus 433 ~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~--~~G~ 510 (1157)
T PRK11447 433 SPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLR--QAGQ 510 (1157)
T ss_pred CHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH--HcCC
Confidence 444578999999999998865 78899999999999 8899
Q ss_pred HHHHHHHHHHHHH--cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH------------------------------
Q 019340 187 AEEAVKLLYQASI--AGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAA------------------------------ 234 (342)
Q Consensus 187 ~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~------------------------------ 234 (342)
+++|+..|+++++ ++++++++.+|.++.. .++.++|+.+++++.
T Consensus 511 ~~~A~~~l~~al~~~P~~~~~~~a~al~l~~----~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~ 586 (1157)
T PRK11447 511 RSQADALMRRLAQQKPNDPEQVYAYGLYLSG----SDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDS 586 (1157)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHC
Confidence 9999999999876 4688888888876654 445566655554321
Q ss_pred ------------HCCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhhcCCHHHHHHHHHH
Q 019340 235 ------------EGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLEL 300 (342)
Q Consensus 235 ------------~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~ 300 (342)
...++..+..+|.+|.. . +++++|+.+|++++.. +++.++++++.+|...|++++|+..|++
T Consensus 587 G~~~eA~~~l~~~p~~~~~~~~La~~~~~-~---g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ 662 (1157)
T PRK11447 587 GKEAEAEALLRQQPPSTRIDLTLADWAQQ-R---GDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAK 662 (1157)
T ss_pred CCHHHHHHHHHhCCCCchHHHHHHHHHHH-c---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 12455677888888855 2 3899999999999875 6688899999999999999999999998
Q ss_pred HHHcCc--HHHHHHHHHHHhhcChhcHHHHHHHHHhhhcCC
Q 019340 301 ATRAGE--TAADHVKNVILQQLSATSRDRAMLVVDSWRAMP 339 (342)
Q Consensus 301 a~~~~~--~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 339 (342)
+++..+ ......++.+ ....++.++|.++++++....
T Consensus 663 ll~~~p~~~~~~~~la~~--~~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 663 LPATANDSLNTQRRVALA--WAALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred HhccCCCChHHHHHHHHH--HHhCCCHHHHHHHHHHHhhhC
Confidence 887754 4444444443 445688888998888887654
No 16
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.77 E-value=9e-16 Score=156.47 Aligned_cols=250 Identities=17% Similarity=0.096 Sum_probs=187.4
Q ss_pred hCCChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCC
Q 019340 75 SFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDK 152 (342)
Q Consensus 75 ~~~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~ 152 (342)
.+..+++.+|...+..+....+. ++..++.+|.+|.. .+++++|+.+|+++++. ++..+++.+|.++...|+
T Consensus 441 ~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~ 514 (899)
T TIGR02917 441 YLRSGQFDKALAAAKKLEKKQPD--NASLHNLLGAIYLG----KGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGN 514 (899)
T ss_pred HHhcCCHHHHHHHHHHHHHhCCC--CcHHHHHHHHHHHh----CCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCC
Confidence 34566777777766666655433 67788888888888 58899999999998875 477888889999988899
Q ss_pred HHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCCCCHHHHHH
Q 019340 153 KEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAAR 228 (342)
Q Consensus 153 ~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~ 228 (342)
+++|+.+|+++++. .+..++..++.++. ..+++++|+.+|++++.. .+...++.++.+|.. .+++++|+.
T Consensus 515 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~ 588 (899)
T TIGR02917 515 PDDAIQRFEKVLTIDPKNLRAILALAGLYL--RTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLG----KGQLKKALA 588 (899)
T ss_pred HHHHHHHHHHHHHhCcCcHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHH----CCCHHHHHH
Confidence 99999999988764 67788888888888 678888888888887664 466777788888876 667888888
Q ss_pred HHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHc
Q 019340 229 WYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRA 304 (342)
Q Consensus 229 ~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~ 304 (342)
+++++++. .++.+++.+|.+|.. .| ++++|+.+|+++++. .++.++..+|.++...|++++|..+|+++++.
T Consensus 589 ~~~~~~~~~~~~~~~~~~l~~~~~~-~~---~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 664 (899)
T TIGR02917 589 ILNEAADAAPDSPEAWLMLGRAQLA-AG---DLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALEL 664 (899)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHH-cC---CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 88888765 467788888888854 22 888888888888765 45777788888888888888888888888877
Q ss_pred CcHHHHHHHHHHHhhcChhcHHHHHHHHHhhhcCCC
Q 019340 305 GETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPS 340 (342)
Q Consensus 305 ~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 340 (342)
.+.+..............++.++|..+++.+....|
T Consensus 665 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 700 (899)
T TIGR02917 665 KPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHP 700 (899)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc
Confidence 655444444444444555666666666666655444
No 17
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.77 E-value=1.6e-17 Score=142.25 Aligned_cols=218 Identities=17% Similarity=0.170 Sum_probs=188.2
Q ss_pred CCChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCH
Q 019340 76 FTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKK 153 (342)
Q Consensus 76 ~~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~ 153 (342)
+..|=+.+|...++..+ ..++.++.+..|..+|.+ ..++..|+..|...++. ++...+...++++..+++.
T Consensus 234 lrLgm~r~AekqlqssL---~q~~~~dTfllLskvY~r----idQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~ 306 (478)
T KOG1129|consen 234 LRLGMPRRAEKQLQSSL---TQFPHPDTFLLLSKVYQR----IDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQ 306 (478)
T ss_pred HHhcChhhhHHHHHHHh---hcCCchhHHHHHHHHHHH----hccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhH
Confidence 45566667765444444 447789999999999999 58999999999999996 5788888999999999999
Q ss_pred HHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHcC--CHHHHHHHHHHHhcCCCCCCCHHHHHHH
Q 019340 154 EAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIAG--HVRAQYQLALCLHRGRGVDFNLQEAARW 229 (342)
Q Consensus 154 ~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~ 229 (342)
++|+++|+.+++. .+.++...+|.-|++ .++++.|+.||++.+++| +++.+.|+|.|+..+ +.++-++..
T Consensus 307 ~~a~~lYk~vlk~~~~nvEaiAcia~~yfY--~~~PE~AlryYRRiLqmG~~speLf~NigLCC~ya----qQ~D~~L~s 380 (478)
T KOG1129|consen 307 EDALQLYKLVLKLHPINVEAIACIAVGYFY--DNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYA----QQIDLVLPS 380 (478)
T ss_pred HHHHHHHHHHHhcCCccceeeeeeeecccc--CCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhh----cchhhhHHH
Confidence 9999999999977 778999999999995 459999999999999997 899999999999984 478889999
Q ss_pred HHHHHHC-----CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhhcCCHHHHHHHHHHHH
Q 019340 230 YLRAAEG-----GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELAT 302 (342)
Q Consensus 230 ~~~A~~~-----~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~ 302 (342)
|++|+.. .-++.|||||.+. .+.| |...|.++|+.++.. +|.++++|||.+-.+.|+.++|..+|..|.
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~va-V~iG---D~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~ 456 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVA-VTIG---DFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAK 456 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeE-Eecc---chHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhh
Confidence 9999864 2478999999998 5666 999999999999875 679999999999999999999999999998
Q ss_pred HcCcHHHH
Q 019340 303 RAGETAAD 310 (342)
Q Consensus 303 ~~~~~~a~ 310 (342)
...|.-+.
T Consensus 457 s~~P~m~E 464 (478)
T KOG1129|consen 457 SVMPDMAE 464 (478)
T ss_pred hhCccccc
Confidence 87765443
No 18
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.77 E-value=6.5e-16 Score=157.52 Aligned_cols=249 Identities=20% Similarity=0.135 Sum_probs=165.5
Q ss_pred HHHhhCCChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC--CHH----------
Q 019340 71 KIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STL---------- 138 (342)
Q Consensus 71 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~---------- 138 (342)
.+......+++.+|...+....+..+. ++.+++.+|.+|.. .+++++|+.+|++++... +..
T Consensus 607 l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 680 (899)
T TIGR02917 607 LGRAQLAAGDLNKAVSSFKKLLALQPD--SALALLLLADAYAV----MKNYAKAITSLKRALELKPDNTEAQIGLAQLLL 680 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 333445667777777766666655433 56677777777776 467777777777776642 334
Q ss_pred ------------------------HHHHHHHHHhcCCCHHHHHHHHHHHHhC-CCHHHHHHHHHHHHcCCccCHHHHHHH
Q 019340 139 ------------------------AMVDAGLMYWEMDKKEAAISLYRQAAVL-GDPAGQFNLGISYLQAQPANAEEAVKL 193 (342)
Q Consensus 139 ------------------------a~~~lg~~~~~~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~~~~g~~~~~~~A~~~ 193 (342)
.+..+|.++...|++++|+.+|++++.. .+...++.++.++. ..|++++|+..
T Consensus 681 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~A~~~ 758 (899)
T TIGR02917 681 AAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALL--ASGNTAEAVKT 758 (899)
T ss_pred HcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHH--HCCCHHHHHHH
Confidence 4444555555556666666666665544 22345555666665 55666666666
Q ss_pred HHHHHH--cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHH
Q 019340 194 LYQASI--AGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRA 269 (342)
Q Consensus 194 ~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a 269 (342)
+++.++ ++++.+++.+|.+|.. .+++++|+.+|+++++. .++.++.++|.++.... + .+|+.+++++
T Consensus 759 ~~~~l~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~----~-~~A~~~~~~~ 829 (899)
T TIGR02917 759 LEAWLKTHPNDAVLRTALAELYLA----QKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELK----D-PRALEYAEKA 829 (899)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHH----CcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC----c-HHHHHHHHHH
Confidence 666655 3467777777777776 56778888888887765 46667777777775422 5 6688888887
Q ss_pred HHc--CCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCcHHHHHHHHHHHhhcChhcHHHHHHHHHhhh
Q 019340 270 ADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWR 336 (342)
Q Consensus 270 ~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~ 336 (342)
+.. +++..+..+|.++...|++++|..+|+++++.++.+..............+..++|+.++++++
T Consensus 830 ~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 830 LKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 765 5566777888888888888888888888888776555555555556666677888888777664
No 19
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.77 E-value=7.3e-16 Score=155.90 Aligned_cols=245 Identities=12% Similarity=0.061 Sum_probs=140.2
Q ss_pred HHhhHHHHHHHHHHhCc-CC--CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHhcCCCHHHH
Q 019340 81 LRAASLVCKSWNDALRP-LR--EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG-STLAMVDAGLMYWEMDKKEAA 156 (342)
Q Consensus 81 ~~~a~~~~~~~~~~~~~-~~--~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~-~~~a~~~lg~~~~~~~~~~~A 156 (342)
+.++...|....+..+. .+ ++.+++.||.++.. +++.+|+..|.+++... +......+|.++...|++++|
T Consensus 454 ~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-----~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~Gr~eeA 528 (987)
T PRK09782 454 LPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-----TLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQVEDYATA 528 (987)
T ss_pred hhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-----CCcHHHHHHHHHHHHhCCchHHHHHHHHHHHHCCCHHHH
Confidence 33334444444444443 23 56677777777765 35666777666666542 222344455555566777777
Q ss_pred HHHHHHHHhC-CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHcC--CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Q 019340 157 ISLYRQAAVL-GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIAG--HVRAQYQLALCLHRGRGVDFNLQEAARWYLRA 233 (342)
Q Consensus 157 ~~~~~~a~~~-~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A 233 (342)
+..|++++.. .+..+++.+|.++. ..|++++|+.+|+++++.. +......++..... .+++++|+.+|+++
T Consensus 529 i~~~rka~~~~p~~~a~~~la~all--~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~----~Gr~~eAl~~~~~A 602 (987)
T PRK09782 529 LAAWQKISLHDMSNEDLLAAANTAQ--AAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYI----PGQPELALNDLTRS 602 (987)
T ss_pred HHHHHHHhccCCCcHHHHHHHHHHH--HCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHh----CCCHHHHHHHHHHH
Confidence 7777766543 33445566666666 5666666666666666542 33333344433332 34666666666666
Q ss_pred HHCC-CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCcHHHH
Q 019340 234 AEGG-YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAAD 310 (342)
Q Consensus 234 ~~~~-~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~ 310 (342)
++.. ++.+++++|.++.. .| ++++|+.+|++++.. +++.++.++|.++...|++++|+..|++|++..|.++.
T Consensus 603 L~l~P~~~a~~~LA~~l~~-lG---~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~ 678 (987)
T PRK09782 603 LNIAPSANAYVARATIYRQ-RH---NVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPA 678 (987)
T ss_pred HHhCCCHHHHHHHHHHHHH-CC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence 6542 35566666666643 22 666666666666654 44666666666666666666666666666666544444
Q ss_pred HHHHHHHhhcChhcHHHHHHHHHhhhcCCC
Q 019340 311 HVKNVILQQLSATSRDRAMLVVDSWRAMPS 340 (342)
Q Consensus 311 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 340 (342)
............++.++|+..+++..+..|
T Consensus 679 a~~nLA~al~~lGd~~eA~~~l~~Al~l~P 708 (987)
T PRK09782 679 LIRQLAYVNQRLDDMAATQHYARLVIDDID 708 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 433444444445666666666666655554
No 20
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.76 E-value=1.8e-15 Score=153.05 Aligned_cols=245 Identities=15% Similarity=-0.028 Sum_probs=198.5
Q ss_pred ChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC-CCHHHHHHHHHHHhcCCCHHHH
Q 019340 78 LPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR-GSTLAMVDAGLMYWEMDKKEAA 156 (342)
Q Consensus 78 ~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~-~~~~a~~~lg~~~~~~~~~~~A 156 (342)
.++..+|...+.......+ +......+|.++.. .+++++|+..|++++.. .+...++.+|.++...|++++|
T Consensus 489 ~~~~~eAi~a~~~Al~~~P---d~~~~L~lA~al~~----~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA 561 (987)
T PRK09782 489 DTLPGVALYAWLQAEQRQP---DAWQHRAVAYQAYQ----VEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAAR 561 (987)
T ss_pred hCCcHHHHHHHHHHHHhCC---chHHHHHHHHHHHH----CCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHH
Confidence 3677778776666666654 34556667777666 48999999999998775 3456688999999999999999
Q ss_pred HHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHcC-CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Q 019340 157 ISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIAG-HVRAQYQLALCLHRGRGVDFNLQEAARWYLRA 233 (342)
Q Consensus 157 ~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~~-~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A 233 (342)
+.+|+++++. .+......++.... ..+++++|+.+|+++++.. ++.++.++|.++.. .+++++|+.+|+++
T Consensus 562 ~~~l~qAL~l~P~~~~l~~~La~~l~--~~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~----lG~~deA~~~l~~A 635 (987)
T PRK09782 562 DRWLQQAEQRGLGDNALYWWLHAQRY--IPGQPELALNDLTRSLNIAPSANAYVARATIYRQ----RHNVPAAVSDLRAA 635 (987)
T ss_pred HHHHHHHHhcCCccHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHH
Confidence 9999999876 34455555555555 5699999999999998743 48999999999988 78999999999999
Q ss_pred HHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCcHHH
Q 019340 234 AEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAA 309 (342)
Q Consensus 234 ~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~~a 309 (342)
+.. +++.++.++|.++.. .| ++++|+.+|+++++. +++.+++++|.++...|++++|..+|+++++..+..+
T Consensus 636 L~l~Pd~~~a~~nLG~aL~~-~G---~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a 711 (987)
T PRK09782 636 LELEPNNSNYQAALGYALWD-SG---DIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQA 711 (987)
T ss_pred HHhCCCCHHHHHHHHHHHHH-CC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCc
Confidence 987 688999999999965 33 999999999999886 6789999999999999999999999999999988777
Q ss_pred HHHHHHHHhhcChhcHHHHHHHHHhhhcCC
Q 019340 310 DHVKNVILQQLSATSRDRAMLVVDSWRAMP 339 (342)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 339 (342)
...............++.+.+-+++.....
T Consensus 712 ~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~ 741 (987)
T PRK09782 712 LITPLTPEQNQQRFNFRRLHEEVGRRWTFS 741 (987)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHhhcC
Confidence 766666655556666777777555544443
No 21
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.75 E-value=3.8e-16 Score=139.07 Aligned_cols=256 Identities=14% Similarity=0.071 Sum_probs=199.1
Q ss_pred HHHHHhhCCChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC--CHHHHHHHHHH
Q 019340 69 LNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLM 146 (342)
Q Consensus 69 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~ 146 (342)
++++..++.+|++..|.+++..+.++-.....+.+...-++.|.+| -+++.+|-.+-..|+..+ ++.++.+-|.+
T Consensus 423 i~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqg---gk~~~~aqqyad~aln~dryn~~a~~nkgn~ 499 (840)
T KOG2003|consen 423 INKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQG---GKDFADAQQYADIALNIDRYNAAALTNKGNI 499 (840)
T ss_pred hhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhc---ccchhHHHHHHHHHhcccccCHHHhhcCCce
Confidence 6788888999999999988887776655444445555455555655 389999999999998864 89999999999
Q ss_pred HhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHH--HHHcCCHHHHHHHHHHHhcCCCCCCC
Q 019340 147 YWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQ--ASIAGHVRAQYQLALCLHRGRGVDFN 222 (342)
Q Consensus 147 ~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~--a~~~~~~~a~~~lg~~~~~g~~~~~~ 222 (342)
-+..||+++|.+.|+.|+.. ...+++|++|..+. ..++.++|+.+|.+ ++-.++.++++.++.+|.. ..|
T Consensus 500 ~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e--~~~~ldeald~f~klh~il~nn~evl~qianiye~----led 573 (840)
T KOG2003|consen 500 AFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAE--ALGNLDEALDCFLKLHAILLNNAEVLVQIANIYEL----LED 573 (840)
T ss_pred eeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHH--HhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH----hhC
Confidence 99999999999999999976 45799999999999 89999999999998 4557899999999999987 779
Q ss_pred HHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhhcCCHHHHHHHH
Q 019340 223 LQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYL 298 (342)
Q Consensus 223 ~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~ 298 (342)
...|++||.++... .++.....||.+|.+ .| |..+|.+|+-..-.- -+.+...+||..|....-.++|+.||
T Consensus 574 ~aqaie~~~q~~slip~dp~ilskl~dlydq-eg---dksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ 649 (840)
T KOG2003|consen 574 PAQAIELLMQANSLIPNDPAILSKLADLYDQ-EG---DKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYF 649 (840)
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHhhc-cc---chhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHH
Confidence 99999999999775 788888889998843 33 777777776665543 34556667777777777777777777
Q ss_pred HHHHHcCcHHHHHHHHHHHhhcChhcHHHHHHHHHhhhc
Q 019340 299 ELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRA 337 (342)
Q Consensus 299 ~~a~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 337 (342)
++|.-..+....-.+-........+.+.+|..+++.+-.
T Consensus 650 ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hr 688 (840)
T KOG2003|consen 650 EKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHR 688 (840)
T ss_pred HHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 777766665555544444555556666667666666533
No 22
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.73 E-value=3.3e-15 Score=138.98 Aligned_cols=228 Identities=15% Similarity=0.052 Sum_probs=187.3
Q ss_pred CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCC------HHH
Q 019340 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGD------PAG 171 (342)
Q Consensus 100 ~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~------~~a 171 (342)
.....|.+|..+.. .+++++|+..|+++++.+ ++.+++.+|.++...|++++|+..+++++...+ ..+
T Consensus 34 ~~~~~y~~g~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~ 109 (389)
T PRK11788 34 RLSRDYFKGLNFLL----NEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLA 109 (389)
T ss_pred hccHHHHHHHHHHh----cCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 45667778988877 489999999999999874 677899999999999999999999999987632 357
Q ss_pred HHHHHHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCC-------HHHH
Q 019340 172 QFNLGISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGY-------VRAM 242 (342)
Q Consensus 172 ~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~~~-------~~a~ 242 (342)
+..||.+|. ..+++++|+.+|+++++. .+..++..++.++.. .+++++|+..|++++..+. ...+
T Consensus 110 ~~~La~~~~--~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 183 (389)
T PRK11788 110 LQELGQDYL--KAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQ----EKDWQKAIDVAERLEKLGGDSLRVEIAHFY 183 (389)
T ss_pred HHHHHHHHH--HCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHH----hchHHHHHHHHHHHHHhcCCcchHHHHHHH
Confidence 889999999 889999999999999874 467889999999987 7799999999999987642 2245
Q ss_pred HHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCcHHH-HHHHHHHHhh
Q 019340 243 YNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAA-DHVKNVILQQ 319 (342)
Q Consensus 243 ~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~~a-~~~~~~~~~~ 319 (342)
..+|.++.. .+++++|+.+|+++++. .+..+++.+|.+|...|++++|..+|+++.+.++... .....+...+
T Consensus 184 ~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~ 259 (389)
T PRK11788 184 CELAQQALA----RGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECY 259 (389)
T ss_pred HHHHHHHHh----CCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHH
Confidence 678888754 23999999999999875 4678899999999999999999999999998865442 2223344445
Q ss_pred cChhcHHHHHHHHHhhhcCCCC
Q 019340 320 LSATSRDRAMLVVDSWRAMPSL 341 (342)
Q Consensus 320 ~~~~~~~~a~~~~~~~~~~~~~ 341 (342)
...++.++|...+++..+..|.
T Consensus 260 ~~~g~~~~A~~~l~~~~~~~p~ 281 (389)
T PRK11788 260 QALGDEAEGLEFLRRALEEYPG 281 (389)
T ss_pred HHcCCHHHHHHHHHHHHHhCCC
Confidence 5668999999999988776654
No 23
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.72 E-value=7.9e-15 Score=131.05 Aligned_cols=205 Identities=15% Similarity=0.049 Sum_probs=154.3
Q ss_pred CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHH
Q 019340 99 REAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFN 174 (342)
Q Consensus 99 ~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~ 174 (342)
..+..++.+|.+|.. .++.++|+..|.++++. +++.+++.+|.++...|++++|+..|+++++. ++..++.+
T Consensus 62 ~~a~~~~~~g~~~~~----~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~ 137 (296)
T PRK11189 62 ERAQLHYERGVLYDS----LGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLN 137 (296)
T ss_pred hhHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 347889999999998 58999999999999997 48999999999999999999999999999865 77999999
Q ss_pred HHHHHHcCCccCHHHHHHHHHHHHHcCCHHHHHHHHH-HHhcCCCCCCCHHHHHHHHHHHHHCCCHHHHH-HHHHHHHcC
Q 019340 175 LGISYLQAQPANAEEAVKLLYQASIAGHVRAQYQLAL-CLHRGRGVDFNLQEAARWYLRAAEGGYVRAMY-NTSLCYSFG 252 (342)
Q Consensus 175 Lg~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~-~~~~g~~~~~~~~~A~~~~~~A~~~~~~~a~~-~lg~~y~~g 252 (342)
+|.++. ..+++++|+..|+++++.........+.. ++.. ..++++|+..|.+++...++..+. .+..++ .|
T Consensus 138 lg~~l~--~~g~~~eA~~~~~~al~~~P~~~~~~~~~~l~~~----~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~-lg 210 (296)
T PRK11189 138 RGIALY--YGGRYELAQDDLLAFYQDDPNDPYRALWLYLAES----KLDPKQAKENLKQRYEKLDKEQWGWNIVEFY-LG 210 (296)
T ss_pred HHHHHH--HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHc----cCCHHHHHHHHHHHHhhCCccccHHHHHHHH-cc
Confidence 999999 78999999999999988642222222222 2222 458999999998887664444332 233333 22
Q ss_pred CCCcccHHHHHHHHHHHH----Hc--CCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCc-HHHHHHHHHHH
Q 019340 253 EGLPLSHRQARKWMKRAA----DC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGE-TAADHVKNVIL 317 (342)
Q Consensus 253 ~g~~~~~~~A~~~~~~a~----~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~-~~a~~~~~~~~ 317 (342)
.. +..+++..+..+. +. ...+++++||.++...|++++|+.+|++|++.++ ....+....+.
T Consensus 211 ~~---~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~~~~e 279 (296)
T PRK11189 211 KI---SEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRYALLE 279 (296)
T ss_pred CC---CHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHHHHHH
Confidence 21 2234444444322 22 3467999999999999999999999999999985 44444444443
No 24
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.72 E-value=1.1e-15 Score=142.00 Aligned_cols=240 Identities=16% Similarity=0.081 Sum_probs=189.9
Q ss_pred hCCChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHh---------------------
Q 019340 75 SFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAA--------------------- 133 (342)
Q Consensus 75 ~~~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~--------------------- 133 (342)
+...-+..+|...+...-+...+ -.+.+.++|..|.. ..++++|...|+.+=+
T Consensus 329 ~~s~y~~~~A~~~~~klp~h~~n--t~wvl~q~GrayFE----l~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~ 402 (638)
T KOG1126|consen 329 SLSQYNCREALNLFEKLPSHHYN--TGWVLSQLGRAYFE----LIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD 402 (638)
T ss_pred HHHHHHHHHHHHHHHhhHHhcCC--chHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh
Confidence 34455666777666664444333 34888899999999 5899999999888721
Q ss_pred ---------------CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHH
Q 019340 134 ---------------RGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQ 196 (342)
Q Consensus 134 ---------------~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~ 196 (342)
...|++|..+|.+|.-.+|.+.|+++|++|+.. ++.-|+..+|.=+. ...++++|..+|++
T Consensus 403 ~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~--~~ee~d~a~~~fr~ 480 (638)
T KOG1126|consen 403 EVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESI--ATEEFDKAMKSFRK 480 (638)
T ss_pred hHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhh--hhHHHHhHHHHHHh
Confidence 146789999999999999999999999999866 56778888887777 67799999999999
Q ss_pred HHHc--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc
Q 019340 197 ASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG--YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC 272 (342)
Q Consensus 197 a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~ 272 (342)
|+.. .+-.|||.||.+|.. ...++.|..+|++|++.+ +......+|.++.. .+..++|+..|++|+-.
T Consensus 481 Al~~~~rhYnAwYGlG~vy~K----qek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~----~k~~d~AL~~~~~A~~l 552 (638)
T KOG1126|consen 481 ALGVDPRHYNAWYGLGTVYLK----QEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQ----LKRKDKALQLYEKAIHL 552 (638)
T ss_pred hhcCCchhhHHHHhhhhheec----cchhhHHHHHHHhhhcCCccchhHHhhhhHHHHH----hhhhhHHHHHHHHHHhc
Confidence 8875 478999999999987 678999999999999885 45567788888855 34899999999999876
Q ss_pred --CCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCcHHHHHHHHHHHhhcChhcHHHHHH
Q 019340 273 --GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAML 330 (342)
Q Consensus 273 --~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~a~~ 330 (342)
.++-..+..|.++...+++++|+..++...+.-+.++-....+...+...+..+.|..
T Consensus 553 d~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~ 612 (638)
T KOG1126|consen 553 DPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALL 612 (638)
T ss_pred CCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHH
Confidence 4577779999999999999999999999998887777665555555555566655554
No 25
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=99.71 E-value=6.2e-16 Score=121.99 Aligned_cols=170 Identities=21% Similarity=0.272 Sum_probs=151.5
Q ss_pred CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC-CCHHHHHHHHHHHhcC-----CCHHHHHHHHHHHHhCCCHHHHH
Q 019340 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR-GSTLAMVDAGLMYWEM-----DKKEAAISLYRQAAVLGDPAGQF 173 (342)
Q Consensus 100 ~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~-~~~~a~~~lg~~~~~~-----~~~~~A~~~~~~a~~~~~~~a~~ 173 (342)
++++.+.||.... |+++|+++|...|+.-.+. +++.+.+.+|.-++.+ +++..|++.|+.+.+.+.+.+..
T Consensus 33 ~Pe~C~lLgdYlE---gi~knF~~A~kv~K~nCden~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~n~~~aC~ 109 (248)
T KOG4014|consen 33 RPESCQLLGDYLE---GIQKNFQAAVKVFKKNCDENSYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDANIPQACR 109 (248)
T ss_pred CchHHHHHHHHHH---HHHHHHHHHHHHHHhcccccCCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhccCCHHHHh
Confidence 7889999998653 4589999999999998775 5899999999888765 58999999999999999999999
Q ss_pred HHHHHHHcCC-----ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCC----------CCC----------CCHHHHHH
Q 019340 174 NLGISYLQAQ-----PANAEEAVKLLYQASIAGHVRAQYQLALCLHRGR----------GVD----------FNLQEAAR 228 (342)
Q Consensus 174 ~Lg~~~~~g~-----~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~----------~~~----------~~~~~A~~ 228 (342)
++|.++..|. ..|..+|.+|+.++.+.++.++.++|..+|..|. |.+ +|+++|.+
T Consensus 110 ~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~~~~aCf~LS~m~~~g~~k~~t~ap~~g~p~~~~~~~~~~kDMdka~q 189 (248)
T KOG4014|consen 110 YLGLLHWNGEKDRKADPDSEKAERYMTRACDLEDGEACFLLSTMYMGGKEKFKTNAPGEGKPLDRAELGSLSKDMDKALQ 189 (248)
T ss_pred hhhhhhccCcCCccCCCCcHHHHHHHHHhccCCCchHHHHHHHHHhccchhhcccCCCCCCCcchhhhhhhhHhHHHHHH
Confidence 9999998754 4468999999999999999999999999998761 334 89999999
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc
Q 019340 229 WYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC 272 (342)
Q Consensus 229 ~~~~A~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~ 272 (342)
+--+|.+.+++.+..|++++|..|.||++|.++|..+-.+|.+.
T Consensus 190 fa~kACel~~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~ 233 (248)
T KOG4014|consen 190 FAIKACELDIPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEI 233 (248)
T ss_pred HHHHHHhcCChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998764
No 26
>PRK12370 invasion protein regulator; Provisional
Probab=99.70 E-value=1.2e-14 Score=140.85 Aligned_cols=223 Identities=13% Similarity=0.007 Sum_probs=167.4
Q ss_pred CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhc---------CCCHHHHHHHHHHHHhC--
Q 019340 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWE---------MDKKEAAISLYRQAAVL-- 166 (342)
Q Consensus 100 ~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~---------~~~~~~A~~~~~~a~~~-- 166 (342)
++..+|..|..+... ....+.++|+.+|++|++.+ ++.++..+|.+|.. .+++++|+..++++++.
T Consensus 257 da~~~~lrg~~~~~~-~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP 335 (553)
T PRK12370 257 DSTMVYLRGKHELNQ-YTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDH 335 (553)
T ss_pred HHHHHHHHhHHHHHc-cCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCC
Confidence 344566667654431 33567889999999999974 78888889987753 24589999999999866
Q ss_pred CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCC--CHHHH
Q 019340 167 GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG--YVRAM 242 (342)
Q Consensus 167 ~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~~--~~~a~ 242 (342)
+++.++..+|.++. ..+++++|+.+|+++++. +++.+++.+|.++.. .+++++|+.+|+++++.+ ++.+.
T Consensus 336 ~~~~a~~~lg~~~~--~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~----~G~~~eAi~~~~~Al~l~P~~~~~~ 409 (553)
T PRK12370 336 NNPQALGLLGLINT--IHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFM----AGQLEEALQTINECLKLDPTRAAAG 409 (553)
T ss_pred CCHHHHHHHHHHHH--HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhcCCCChhhH
Confidence 78999999999998 788999999999998774 588999999999987 678999999999999874 44555
Q ss_pred HHHHHHHHcCCCCcccHHHHHHHHHHHHHc---CCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCcHHHHHHHHHHHhh
Q 019340 243 YNTSLCYSFGEGLPLSHRQARKWMKRAADC---GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQQ 319 (342)
Q Consensus 243 ~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~---~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~~~~~~~~ 319 (342)
+.++.++.. .| ++++|+.++++++.. +++.++.++|.+|...|++++|..++++.....+........+...+
T Consensus 410 ~~~~~~~~~-~g---~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~ 485 (553)
T PRK12370 410 ITKLWITYY-HT---GIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEY 485 (553)
T ss_pred HHHHHHHHh-cc---CHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHH
Confidence 555554433 23 789999999999864 45778899999999999999999999987666444333333333333
Q ss_pred cChhcHHHHHHHHHhh
Q 019340 320 LSATSRDRAMLVVDSW 335 (342)
Q Consensus 320 ~~~~~~~~a~~~~~~~ 335 (342)
+..++ ++....+.+
T Consensus 486 ~~~g~--~a~~~l~~l 499 (553)
T PRK12370 486 CQNSE--RALPTIREF 499 (553)
T ss_pred hccHH--HHHHHHHHH
Confidence 33332 444444443
No 27
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.70 E-value=1.8e-14 Score=123.24 Aligned_cols=191 Identities=17% Similarity=0.170 Sum_probs=147.3
Q ss_pred CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHH
Q 019340 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNL 175 (342)
Q Consensus 100 ~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~L 175 (342)
.+..++.+|.+|.. .+++++|+..|+++++. ++..++..+|.+|...|++++|+.+|+++++. .++.+++++
T Consensus 30 ~~~~~~~la~~~~~----~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 105 (234)
T TIGR02521 30 AAKIRVQLALGYLE----QGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNY 105 (234)
T ss_pred HHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 35677888888887 58899999999998875 46778888999999899999999999998865 667888888
Q ss_pred HHHHHcCCccCHHHHHHHHHHHHHc----CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHH
Q 019340 176 GISYLQAQPANAEEAVKLLYQASIA----GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCY 249 (342)
Q Consensus 176 g~~~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y 249 (342)
|.++. ..+++++|+.+|++++.. .....++.+|.++.. .+++++|..+|.+++.. +++.++..+|.++
T Consensus 106 ~~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 179 (234)
T TIGR02521 106 GTFLC--QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALK----AGDFDKAEKYLTRALQIDPQRPESLLELAELY 179 (234)
T ss_pred HHHHH--HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCcCChHHHHHHHHHH
Confidence 88888 788899999999988763 345677788888876 66788888888888765 3566777777777
Q ss_pred HcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHc
Q 019340 250 SFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRA 304 (342)
Q Consensus 250 ~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~ 304 (342)
.. . +++++|..++++++.. .++..+..++.++...|+.++|..+.+.+...
T Consensus 180 ~~-~---~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 180 YL-R---GQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HH-c---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 54 2 2788888888887664 34566667777777778888887777765543
No 28
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.70 E-value=7.3e-16 Score=143.16 Aligned_cols=197 Identities=15% Similarity=0.085 Sum_probs=175.3
Q ss_pred CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHH
Q 019340 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNL 175 (342)
Q Consensus 100 ~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~L 175 (342)
.++++-.+|.||.. .+|.+.|++.|++|++++ .+.++..+|.-+....++|+|..+|++|+.. .+-.|||.|
T Consensus 420 sPesWca~GNcfSL----Qkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGl 495 (638)
T KOG1126|consen 420 SPESWCALGNCFSL----QKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGL 495 (638)
T ss_pred CcHHHHHhcchhhh----hhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhh
Confidence 45567778999988 699999999999999985 7888999999999999999999999999865 788999999
Q ss_pred HHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHc
Q 019340 176 GISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSF 251 (342)
Q Consensus 176 g~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~ 251 (342)
|.+|. ..++++.|.-+|++|++- .+......+|.++.. .+..++|+.+|++|+.. .++...+..|.++.
T Consensus 496 G~vy~--Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~----~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~- 568 (638)
T KOG1126|consen 496 GTVYL--KQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQ----LKRKDKALQLYEKAIHLDPKNPLCKYHRASILF- 568 (638)
T ss_pred hhhee--ccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHH----hhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHH-
Confidence 99999 899999999999999885 477778899999988 78999999999999987 47888999999994
Q ss_pred CCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCcHHHH
Q 019340 252 GEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAAD 310 (342)
Q Consensus 252 g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~ 310 (342)
+.+ ++++|+.-+++.-+. .+...++.||.+|...|+.+.|+..|.-|.++++.-+.
T Consensus 569 ~~~---~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 569 SLG---RYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred hhc---chHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 444 999999999997665 66778899999999999999999999999999876655
No 29
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=2e-14 Score=128.46 Aligned_cols=190 Identities=17% Similarity=0.093 Sum_probs=159.8
Q ss_pred CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC-----CHH-------------------------------HHHHH
Q 019340 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG-----STL-------------------------------AMVDA 143 (342)
Q Consensus 100 ~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~-----~~~-------------------------------a~~~l 143 (342)
........|.++.. ..|+++|+..|+.....+ +-+ .+.-+
T Consensus 261 ~~~i~~~~A~~~y~----~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiI 336 (559)
T KOG1155|consen 261 SMYIKTQIAAASYN----QRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCII 336 (559)
T ss_pred cHHHHHHHHHHHhh----hhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeee
Confidence 34555566777777 589999999999987642 211 12223
Q ss_pred HHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHcC--CHHHHHHHHHHHhcCCCC
Q 019340 144 GLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIAG--HVRAQYQLALCLHRGRGV 219 (342)
Q Consensus 144 g~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~ 219 (342)
|.-|.-.++.++|+.+|++|+.+ +...+|..+|.=|. +.++...|+..|++|++.+ +-+|||.||++|..
T Consensus 337 aNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyv--EmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYei---- 410 (559)
T KOG1155|consen 337 ANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYV--EMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEI---- 410 (559)
T ss_pred hhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHH--HhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHH----
Confidence 44444457899999999999987 56789999999999 9999999999999999865 78999999999986
Q ss_pred CCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCCH--HHHHHHHHHhhhcCCHHHHH
Q 019340 220 DFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHG--KAQLEHGLGLFTEGEMMKAV 295 (342)
Q Consensus 220 ~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~--~a~~~Lg~~~~~~~~~~~A~ 295 (342)
.+-..=|+-+|++|... .|...|..||.||.. . .+.++|+++|++|+..++. .+++.||.+|.+.++.++|.
T Consensus 411 m~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~k-l---~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa 486 (559)
T KOG1155|consen 411 MKMHFYALYYFQKALELKPNDSRLWVALGECYEK-L---NRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAA 486 (559)
T ss_pred hcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHH-h---ccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHH
Confidence 67788999999999886 789999999999965 3 3999999999999998876 88999999999999999999
Q ss_pred HHHHHHHH
Q 019340 296 VYLELATR 303 (342)
Q Consensus 296 ~~~~~a~~ 303 (342)
.+|++-++
T Consensus 487 ~~yek~v~ 494 (559)
T KOG1155|consen 487 QYYEKYVE 494 (559)
T ss_pred HHHHHHHH
Confidence 99999876
No 30
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.69 E-value=1.8e-14 Score=123.17 Aligned_cols=195 Identities=19% Similarity=0.141 Sum_probs=163.1
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHH
Q 019340 136 STLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLAL 211 (342)
Q Consensus 136 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~ 211 (342)
.+.+++++|.++...|++++|+.+++++++. +++.++..+|.++. ..+++++|+.+|+++++. .++.+++++|.
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~--~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 107 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQ--QLGELEKAEDSFRRALTLNPNNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH--HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence 4678899999999999999999999999865 67889999999999 889999999999999875 57889999999
Q ss_pred HHhcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHh
Q 019340 212 CLHRGRGVDFNLQEAARWYLRAAEG----GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGL 285 (342)
Q Consensus 212 ~~~~g~~~~~~~~~A~~~~~~A~~~----~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~ 285 (342)
++.. .+++++|+.+|.+++.. .....++++|.+|.. .| ++++|..+|.+++.. +++.++..+|.++
T Consensus 108 ~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g---~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 179 (234)
T TIGR02521 108 FLCQ----QGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALK-AG---DFDKAEKYLTRALQIDPQRPESLLELAELY 179 (234)
T ss_pred HHHH----cccHHHHHHHHHHHHhccccccchHHHHHHHHHHHH-cC---CHHHHHHHHHHHHHhCcCChHHHHHHHHHH
Confidence 9987 77999999999999875 346688999999965 33 999999999999886 4578899999999
Q ss_pred hhcCCHHHHHHHHHHHHHcCcHHHHHHHHHHHhhcChhcHHHHHHHHHhhhcCCC
Q 019340 286 FTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPS 340 (342)
Q Consensus 286 ~~~~~~~~A~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 340 (342)
...|++++|..+++++++..+.+..............++.+++....+.+....|
T Consensus 180 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 234 (234)
T TIGR02521 180 YLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLFP 234 (234)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc
Confidence 9999999999999999987543333333334444556788888888777766543
No 31
>PRK12370 invasion protein regulator; Provisional
Probab=99.68 E-value=3.3e-14 Score=137.87 Aligned_cols=213 Identities=15% Similarity=0.045 Sum_probs=170.7
Q ss_pred CChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHc----CC-CCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhc
Q 019340 77 TLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKH----GR-GVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWE 149 (342)
Q Consensus 77 ~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~----g~-g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~ 149 (342)
..+++.+|...+.+..+..++ ++.++..||.+|.. |. ...+++++|+..+++|++. +++.++..+|.++..
T Consensus 273 ~~~~~~~A~~~~~~Al~ldP~--~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~ 350 (553)
T PRK12370 273 TPYSLQQALKLLTQCVNMSPN--SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTI 350 (553)
T ss_pred CHHHHHHHHHHHHHHHhcCCc--cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 345666787777777766554 78888899988763 11 1346789999999999997 489999999999999
Q ss_pred CCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCCCCHHH
Q 019340 150 MDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQE 225 (342)
Q Consensus 150 ~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~ 225 (342)
.|++++|+.+|+++++. +++.+++++|.++. ..|++++|+.+|+++++. .++.+.+.++.++.. .+++++
T Consensus 351 ~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~--~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~----~g~~ee 424 (553)
T PRK12370 351 HSEYIVGSLLFKQANLLSPISADIKYYYGWNLF--MAGQLEEALQTINECLKLDPTRAAAGITKLWITYY----HTGIDD 424 (553)
T ss_pred ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH--HCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHh----ccCHHH
Confidence 99999999999999866 78999999999999 889999999999999885 466666666655554 457899
Q ss_pred HHHHHHHHHHC---CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhhcCCHHHHHHHHHH
Q 019340 226 AARWYLRAAEG---GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLEL 300 (342)
Q Consensus 226 A~~~~~~A~~~---~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~ 300 (342)
|+.++++++.. +++.++.++|.+|.. .| ++++|..++++.... .+..+...|+..|...|+ +|...++.
T Consensus 425 A~~~~~~~l~~~~p~~~~~~~~la~~l~~-~G---~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~l~~ 498 (553)
T PRK12370 425 AIRLGDELRSQHLQDNPILLSMQVMFLSL-KG---KHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE--RALPTIRE 498 (553)
T ss_pred HHHHHHHHHHhccccCHHHHHHHHHHHHh-CC---CHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH--HHHHHHHH
Confidence 99999999864 467889999999954 44 999999999987654 445677888888888884 67776666
Q ss_pred HHH
Q 019340 301 ATR 303 (342)
Q Consensus 301 a~~ 303 (342)
.++
T Consensus 499 ll~ 501 (553)
T PRK12370 499 FLE 501 (553)
T ss_pred HHH
Confidence 554
No 32
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.68 E-value=6.7e-16 Score=137.19 Aligned_cols=254 Identities=17% Similarity=0.059 Sum_probs=107.3
Q ss_pred HHHHHhhCCChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC--CHHHHHHHHHH
Q 019340 69 LNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLM 146 (342)
Q Consensus 69 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~ 146 (342)
+.-+..++..+++.+|...+........+..++..+..+|.+... .++++.|+..|++.+..+ ++.....++.+
T Consensus 12 l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~----~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l 87 (280)
T PF13429_consen 12 LRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWS----LGDYDEAIEAYEKLLASDKANPQDYERLIQL 87 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccc----ccccccccccccccccccccccccccccccc
Confidence 344556778899999987775555454344577777888988887 489999999999998875 55566677777
Q ss_pred HhcCCCHHHHHHHHHHHHhC-CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc----CCHHHHHHHHHHHhcCCCCCC
Q 019340 147 YWEMDKKEAAISLYRQAAVL-GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA----GHVRAQYQLALCLHRGRGVDF 221 (342)
Q Consensus 147 ~~~~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~ 221 (342)
...+++++|+.+++++.+. +++..+..+..++. ..++++++...+.++... .++..+..+|.++.. .+
T Consensus 88 -~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~----~G 160 (280)
T PF13429_consen 88 -LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYY--RLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQ----LG 160 (280)
T ss_dssp -------------------------------H-HH--HTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHH----CC
T ss_pred -cccccccccccccccccccccccchhhHHHHHHH--HHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHH----cC
Confidence 6889999999999998765 66777777777777 778999999999986653 477889999999998 77
Q ss_pred CHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhhcCCHHHHHHH
Q 019340 222 NLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVY 297 (342)
Q Consensus 222 ~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~ 297 (342)
+.++|+.+|++|++. +++.+...+++++.. .| +.+++...++..... .++..+..+|.+|...|++++|+.+
T Consensus 161 ~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~-~~---~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~ 236 (280)
T PF13429_consen 161 DPDKALRDYRKALELDPDDPDARNALAWLLID-MG---DYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEY 236 (280)
T ss_dssp HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCT-TC---HHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-CC---ChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccc
Confidence 899999999999986 578889999999853 33 888877777776554 5566778999999999999999999
Q ss_pred HHHHHHcCcHHHHHHHHHHHhhcChhcHHHHHHHHHhhhc
Q 019340 298 LELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRA 337 (342)
Q Consensus 298 ~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 337 (342)
|++++...+.+..............++.++|.++.++...
T Consensus 237 ~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 237 LEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHSTT-HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccccccccccccccc
Confidence 9999999888888888888888888999999998887654
No 33
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.65 E-value=8.5e-14 Score=134.19 Aligned_cols=249 Identities=11% Similarity=0.019 Sum_probs=202.4
Q ss_pred ChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC-----CHHHHHHHHHHHhcCCC
Q 019340 78 LPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG-----STLAMVDAGLMYWEMDK 152 (342)
Q Consensus 78 ~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~-----~~~a~~~lg~~~~~~~~ 152 (342)
...+..+..+..+.+..-. .+|.++..|+..|.. ++|++.+..+..-++... -+++.|++|+.|...||
T Consensus 249 ~~s~~~~~~ll~~ay~~n~--~nP~~l~~LAn~fyf----K~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd 322 (1018)
T KOG2002|consen 249 SDSYKKGVQLLQRAYKENN--ENPVALNHLANHFYF----KKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGD 322 (1018)
T ss_pred hHHHHHHHHHHHHHHhhcC--CCcHHHHHHHHHHhh----cccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhcc
Confidence 3445566666666665543 488889999988888 799999999999998753 35678999999999999
Q ss_pred HHHHHHHHHHHHhC--CC-HHHHHHHHHHHHcCCccCHHHHHHHHHHHHH--cCCHHHHHHHHHHHhcCCCCCCCHHHHH
Q 019340 153 KEAAISLYRQAAVL--GD-PAGQFNLGISYLQAQPANAEEAVKLLYQASI--AGHVRAQYQLALCLHRGRGVDFNLQEAA 227 (342)
Q Consensus 153 ~~~A~~~~~~a~~~--~~-~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~ 227 (342)
+++|..+|.+++.. ++ .-+++.||.+|. ..++++.++.+|++..+ +++.+....||.+|..-.......++|.
T Consensus 323 ~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i--~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~ 400 (1018)
T KOG2002|consen 323 FEKAFKYYMESLKADNDNFVLPLVGLGQMYI--KRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKAS 400 (1018)
T ss_pred HHHHHHHHHHHHccCCCCccccccchhHHHH--HhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHH
Confidence 99999999999866 33 668899999999 88999999999999887 5789999999999986322233568999
Q ss_pred HHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc-------CCHHHHHHHHHHhhhcCCHHHHHHHH
Q 019340 228 RWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC-------GHGKAQLEHGLGLFTEGEMMKAVVYL 298 (342)
Q Consensus 228 ~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~-------~~~~a~~~Lg~~~~~~~~~~~A~~~~ 298 (342)
.+..++.+. .+..+|..++.+|.. .|...++.+|.+|++. -+++.++|+|..++..|++++|...|
T Consensus 401 ~~l~K~~~~~~~d~~a~l~laql~e~-----~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f 475 (1018)
T KOG2002|consen 401 NVLGKVLEQTPVDSEAWLELAQLLEQ-----TDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHF 475 (1018)
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHh-----cChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHH
Confidence 999999887 588999999999964 3777779999999752 35788999999999999999999999
Q ss_pred HHHHHc----Cc-HH-------HHHHHHHHHhhcChhcHHHHHHHHHhhhcCCCC
Q 019340 299 ELATRA----GE-TA-------ADHVKNVILQQLSATSRDRAMLVVDSWRAMPSL 341 (342)
Q Consensus 299 ~~a~~~----~~-~~-------a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 341 (342)
..|... .+ .. -.+|++.+...+ .+.+.|.+.++.+++.+|.
T Consensus 476 ~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l--~~~~~A~e~Yk~Ilkehp~ 528 (1018)
T KOG2002|consen 476 KSALGKLLEVANKDEGKSTNLTLKYNLARLLEEL--HDTEVAEEMYKSILKEHPG 528 (1018)
T ss_pred HHHhhhhhhhcCccccccchhHHHHHHHHHHHhh--hhhhHHHHHHHHHHHHCch
Confidence 999765 22 22 267777777766 6677799999999999885
No 34
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.65 E-value=3.3e-13 Score=135.62 Aligned_cols=181 Identities=16% Similarity=0.048 Sum_probs=111.7
Q ss_pred CCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHcC--C----HHHHHHHHHHHhcCCCCCC
Q 019340 151 DKKEAAISLYRQAAVLG---DPAGQFNLGISYLQAQPANAEEAVKLLYQASIAG--H----VRAQYQLALCLHRGRGVDF 221 (342)
Q Consensus 151 ~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~~--~----~~a~~~lg~~~~~g~~~~~ 221 (342)
+++++|+..|+++++.+ ...+...+|.+|. ..+++++|+.+|+++++.. + ......|+.++.. .+
T Consensus 251 g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl--~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~----~g 324 (765)
T PRK10049 251 DRYKDVISEYQRLKAEGQIIPPWAQRWVASAYL--KLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLE----SE 324 (765)
T ss_pred hhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHH--hcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHh----cc
Confidence 34444444444444332 1223333455555 4555556666665554432 1 2334444444444 45
Q ss_pred CHHHHHHHHHHHHHCCC-----------------HHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHH
Q 019340 222 NLQEAARWYLRAAEGGY-----------------VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHG 282 (342)
Q Consensus 222 ~~~~A~~~~~~A~~~~~-----------------~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg 282 (342)
++++|+.+++++..... ..++..++.++... +++++|+..+++++.. +++..++.+|
T Consensus 325 ~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~----g~~~eA~~~l~~al~~~P~n~~l~~~lA 400 (765)
T PRK10049 325 NYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYS----NDLPQAEMRARELAYNAPGNQGLRIDYA 400 (765)
T ss_pred cHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 56666666666655321 23455666666432 2778888888877664 5677788888
Q ss_pred HHhhhcCCHHHHHHHHHHHHHcCcHHHHHHHHHHHhhcChhcHHHHHHHHHhhhcCCCC
Q 019340 283 LGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPSL 341 (342)
Q Consensus 283 ~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 341 (342)
.++...|++++|+..++++++..|.+....+......+..++.++|+.+++++.+..|.
T Consensus 401 ~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd 459 (765)
T PRK10049 401 SVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQ 459 (765)
T ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Confidence 88888888888888888888887776666666677777778888888888888777664
No 35
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.63 E-value=5.1e-13 Score=134.26 Aligned_cols=251 Identities=12% Similarity=-0.018 Sum_probs=184.3
Q ss_pred CCChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCH
Q 019340 76 FTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKK 153 (342)
Q Consensus 76 ~~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~ 153 (342)
.-.|+..+|...+...... +...+.++..+|.++.. .+++++|+.+|+++++. +++.++..++.++...|++
T Consensus 26 ~~~g~~~~A~~~~~~~~~~--~~~~a~~~~~lA~~~~~----~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~ 99 (765)
T PRK10049 26 LWAGQDAEVITVYNRYRVH--MQLPARGYAAVAVAYRN----LKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQY 99 (765)
T ss_pred HHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH
Confidence 4567778887555444431 34467778888988888 58899999999998876 4788888999999999999
Q ss_pred HHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHH--cCCHHHHHHHHHHHhcCCCCC---------
Q 019340 154 EAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASI--AGHVRAQYQLALCLHRGRGVD--------- 220 (342)
Q Consensus 154 ~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~--------- 220 (342)
++|+..++++++. +++. ++.+|.++. ..+++++|+..|+++++ ++++.++..+|.++..++...
T Consensus 100 ~eA~~~l~~~l~~~P~~~~-~~~la~~l~--~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~ 176 (765)
T PRK10049 100 DEALVKAKQLVSGAPDKAN-LLALAYVYK--RAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDA 176 (765)
T ss_pred HHHHHHHHHHHHhCCCCHH-HHHHHHHHH--HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhC
Confidence 9999999998765 6777 888898888 88899999999999877 467888888888876432110
Q ss_pred ------------------------------CCH---HHHHHHHHHHHHC--CCH-------HHHHH-HHHHHHcCCCCcc
Q 019340 221 ------------------------------FNL---QEAARWYLRAAEG--GYV-------RAMYN-TSLCYSFGEGLPL 257 (342)
Q Consensus 221 ------------------------------~~~---~~A~~~~~~A~~~--~~~-------~a~~~-lg~~y~~g~g~~~ 257 (342)
..+ ++|+..|++++.. .++ .+... ++.++.. +
T Consensus 177 ~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~-----g 251 (765)
T PRK10049 177 NLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLAR-----D 251 (765)
T ss_pred CCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHh-----h
Confidence 011 4566666666543 111 12222 4555532 3
Q ss_pred cHHHHHHHHHHHHHcC---CHHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCcHH----HHHHHHHHHhhcChhcHHHHHH
Q 019340 258 SHRQARKWMKRAADCG---HGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETA----ADHVKNVILQQLSATSRDRAML 330 (342)
Q Consensus 258 ~~~~A~~~~~~a~~~~---~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~~----a~~~~~~~~~~~~~~~~~~a~~ 330 (342)
++++|+..|++++..+ +..+...+|.+|...|++++|+.+|++++...+.. ......++...+..++.++|..
T Consensus 252 ~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~ 331 (765)
T PRK10049 252 RYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALT 331 (765)
T ss_pred hHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHH
Confidence 8999999999998875 34566778999999999999999999998876433 1223344555678899999999
Q ss_pred HHHhhhcCCC
Q 019340 331 VVDSWRAMPS 340 (342)
Q Consensus 331 ~~~~~~~~~~ 340 (342)
.++++....|
T Consensus 332 ~l~~~~~~~P 341 (765)
T PRK10049 332 VTAHTINNSP 341 (765)
T ss_pred HHHHHhhcCC
Confidence 9999887755
No 36
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.61 E-value=1.8e-13 Score=112.50 Aligned_cols=194 Identities=20% Similarity=0.160 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHH
Q 019340 101 AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLG 176 (342)
Q Consensus 101 a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg 176 (342)
+.+...||.-|..+ +|+..|..-+++|++.+ +..++.-++.+|...|+.+.|.+.|++|+.. ++.+.+.|.|
T Consensus 35 a~arlqLal~YL~~----gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG 110 (250)
T COG3063 35 AKARLQLALGYLQQ----GDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYG 110 (250)
T ss_pred HHHHHHHHHHHHHC----CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhh
Confidence 34555566666663 66666666666666643 5556666666666666666666666666544 5556666666
Q ss_pred HHHHcCCccCHHHHHHHHHHHHHc----CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcC
Q 019340 177 ISYLQAQPANAEEAVKLLYQASIA----GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFG 252 (342)
Q Consensus 177 ~~~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~y~~g 252 (342)
..+- ..|.+++|..+|++|+.. ..+..+-|+|.|... .++.+.|.++|+++++.+
T Consensus 111 ~FLC--~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~----~gq~~~A~~~l~raL~~d--------------- 169 (250)
T COG3063 111 AFLC--AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALK----AGQFDQAEEYLKRALELD--------------- 169 (250)
T ss_pred HHHH--hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhh----cCCchhHHHHHHHHHHhC---------------
Confidence 5555 555666666666666553 234555555555544 334444555555444431
Q ss_pred CCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCcHHHHHHHHHHHhhcChhcHHHHHHHH
Q 019340 253 EGLPLSHRQARKWMKRAADCGHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVV 332 (342)
Q Consensus 253 ~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~ 332 (342)
.+.+.+...++..++..|++..|..++++-...+...+..++-.+...-..++.+.+.+.-
T Consensus 170 -------------------p~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~ 230 (250)
T COG3063 170 -------------------PQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQ 230 (250)
T ss_pred -------------------cCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHH
Confidence 1234444445555555555555555555544444444444333333333344444444444
Q ss_pred HhhhcC
Q 019340 333 DSWRAM 338 (342)
Q Consensus 333 ~~~~~~ 338 (342)
.++.+.
T Consensus 231 ~qL~r~ 236 (250)
T COG3063 231 AQLQRL 236 (250)
T ss_pred HHHHHh
Confidence 444333
No 37
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=1.2e-13 Score=126.36 Aligned_cols=205 Identities=17% Similarity=0.147 Sum_probs=171.5
Q ss_pred CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHH
Q 019340 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNL 175 (342)
Q Consensus 100 ~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~L 175 (342)
.+..++.+|..|.- -+...+|..+|.+|...+ ...+|...|..|...++.++|+..|..|... |.-.....|
T Consensus 311 ~a~sW~aVg~YYl~----i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYl 386 (611)
T KOG1173|consen 311 KALSWFAVGCYYLM----IGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYL 386 (611)
T ss_pred CCcchhhHHHHHHH----hcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHH
Confidence 45667778887777 478999999999998875 7789999999999999999999999999876 778888889
Q ss_pred HHHHHcCCccCHHHHHHHHHHHHH--cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC----C-----CHHHHHH
Q 019340 176 GISYLQAQPANAEEAVKLLYQASI--AGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG----G-----YVRAMYN 244 (342)
Q Consensus 176 g~~~~~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~----~-----~~~a~~~ 244 (342)
|.=|. ..++++-|.++|..|.. +.+|-..+.+|.+.+. .+.+.+|..||++++.. + -...+.|
T Consensus 387 gmey~--~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~----~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~N 460 (611)
T KOG1173|consen 387 GMEYM--RTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYT----YEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNN 460 (611)
T ss_pred HHHHH--HhccHHHHHHHHHHHHhcCCCcchhhhhhhheeeh----HhhhHHHHHHHHHHHHHhhhccccccchhHHHHh
Confidence 99888 88899999999999755 6799999999999886 67899999999999842 1 2334889
Q ss_pred HHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCcHH--HHHHHHHHHh
Q 019340 245 TSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETA--ADHVKNVILQ 318 (342)
Q Consensus 245 lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~~--a~~~~~~~~~ 318 (342)
||.+|.+ .+.+.+|+.+|++++.. .++..+..+|.+|.-.|++++|+.+|.+|+.+.+.+ +...++....
T Consensus 461 LGH~~Rk----l~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 461 LGHAYRK----LNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIE 534 (611)
T ss_pred HHHHHHH----HhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 9999965 34899999999999886 668889999999999999999999999999887655 4444554443
No 38
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.59 E-value=5.8e-13 Score=119.06 Aligned_cols=209 Identities=15% Similarity=0.009 Sum_probs=154.7
Q ss_pred CHHHHHHHHHHHHhC------CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHH
Q 019340 120 NLDKALDSFLKGAAR------GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAV 191 (342)
Q Consensus 120 ~~~~A~~~~~~A~~~------~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~ 191 (342)
..+.++..+.+.+.. +.+..++.+|.+|...|+.++|+..|+++++. +++.+++++|.++. ..+++++|+
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~--~~g~~~~A~ 118 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLT--QAGNFDAAY 118 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH--HCCCHHHHH
Confidence 456677778887753 24677999999999999999999999999866 78999999999999 899999999
Q ss_pred HHHHHHHH--cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHH
Q 019340 192 KLLYQASI--AGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRA 269 (342)
Q Consensus 192 ~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a 269 (342)
..|+++++ +++..+++++|.++.. .+++++|+..|++++.....+.+..+....... ..++++|+..|.++
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~----~g~~~eA~~~~~~al~~~P~~~~~~~~~~l~~~---~~~~~~A~~~l~~~ 191 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYY----GGRYELAQDDLLAFYQDDPNDPYRALWLYLAES---KLDPKQAKENLKQR 191 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHc---cCCHHHHHHHHHHH
Confidence 99999977 4689999999999987 679999999999999875433333222222122 23899999999888
Q ss_pred HHcCCHHHHHHHHHHhhhcCCHH--HHHHHHHHH----HHcC--cHHHHHHHHHHHhhcChhcHHHHHHHHHhhhcCCC
Q 019340 270 ADCGHGKAQLEHGLGLFTEGEMM--KAVVYLELA----TRAG--ETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPS 340 (342)
Q Consensus 270 ~~~~~~~a~~~Lg~~~~~~~~~~--~A~~~~~~a----~~~~--~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 340 (342)
+...++..+. .+.++...|+.. +++..+..+ .+.+ ..++..+++.+.. ..++.++|+..+++....+|
T Consensus 192 ~~~~~~~~~~-~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~--~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 192 YEKLDKEQWG-WNIVEFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYL--SLGDLDEAAALFKLALANNV 267 (296)
T ss_pred HhhCCccccH-HHHHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHHhCC
Confidence 7654444332 345555555543 333333332 2333 3355666666655 55889999999999888775
No 39
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.59 E-value=2e-13 Score=125.24 Aligned_cols=242 Identities=12% Similarity=0.039 Sum_probs=173.8
Q ss_pred HHHHHhhCCChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHH
Q 019340 69 LNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLM 146 (342)
Q Consensus 69 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~ 146 (342)
++....++..|++.+|...+....+.-+. +++++..||.+... ..+-..|+..+++++++ ++..++..||..
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~--haeAW~~LG~~qaE----NE~E~~ai~AL~rcl~LdP~NleaLmaLAVS 362 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQ--HAEAWQKLGITQAE----NENEQNAISALRRCLELDPTNLEALMALAVS 362 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChH--HHHHHHHhhhHhhh----ccchHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 44555566777777777666666655443 77777777777776 35666777777777776 477777777777
Q ss_pred HhcCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHc-C------CccCHHHHHHHHHHHHHc----CCHHHHHHHHHHHhc
Q 019340 147 YWEMDKKEAAISLYRQAAVLGDPAGQFNLGISYLQ-A------QPANAEEAVKLLYQASIA----GHVRAQYQLALCLHR 215 (342)
Q Consensus 147 ~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~-g------~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~ 215 (342)
|...|.-.+|++++.+-+....+..+.-.+..-.. + .......-.++|..++.. .+++++..||.+|..
T Consensus 363 ytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~l 442 (579)
T KOG1125|consen 363 YTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNL 442 (579)
T ss_pred HhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhc
Confidence 77777777777777777655444433221100000 0 011233445555555442 489999999999987
Q ss_pred CCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhhcCCH
Q 019340 216 GRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEM 291 (342)
Q Consensus 216 g~~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~ 291 (342)
.+++++|+.+|+.|+.. .+..-|..||-.+..|. ...+|+..|++|++. +...+.||||..+.+.|.|
T Consensus 443 ----s~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~----~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~y 514 (579)
T KOG1125|consen 443 ----SGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGN----RSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAY 514 (579)
T ss_pred ----chHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCc----ccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhH
Confidence 77999999999999986 57778999999998877 899999999999987 7789999999999999999
Q ss_pred HHHHHHHHHHHHcCc------------HHHHHHHHHHHhhcChhc
Q 019340 292 MKAVVYLELATRAGE------------TAADHVKNVILQQLSATS 324 (342)
Q Consensus 292 ~~A~~~~~~a~~~~~------------~~a~~~~~~~~~~~~~~~ 324 (342)
++|..+|-.|+.... ...+..+...+..+...|
T Consensus 515 kEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D 559 (579)
T KOG1125|consen 515 KEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSD 559 (579)
T ss_pred HHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCch
Confidence 999999999987521 245566666666555444
No 40
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=99.57 E-value=2e-13 Score=107.91 Aligned_cols=155 Identities=21% Similarity=0.222 Sum_probs=136.6
Q ss_pred hhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCC-CCcCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcC-------
Q 019340 79 PQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGR-GVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEM------- 150 (342)
Q Consensus 79 ~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~-g~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~------- 150 (342)
.|+++|..++. ....+.+.+.+.|.+|..+..|. |..+++..|++.|+.|.+.+.+.+..++|.+++.+
T Consensus 49 knF~~A~kv~K---~nCden~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~n~~~aC~~~gLl~~~g~~~r~~d 125 (248)
T KOG4014|consen 49 KNFQAAVKVFK---KNCDENSYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDANIPQACRYLGLLHWNGEKDRKAD 125 (248)
T ss_pred HHHHHHHHHHH---hcccccCCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhccCCHHHHhhhhhhhccCcCCccCC
Confidence 45666653332 23344678999999999999988 78999999999999999999999999999999886
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCC----------------------ccCHHHHHHHHHHHHHcCCHHHHHH
Q 019340 151 DKKEAAISLYRQAAVLGDPAGQFNLGISYLQAQ----------------------PANAEEAVKLLYQASIAGHVRAQYQ 208 (342)
Q Consensus 151 ~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~g~----------------------~~~~~~A~~~~~~a~~~~~~~a~~~ 208 (342)
-|.++|..++.++.+.++..+.++|...|+.|. .+|.++|+++-.++.+++++.+..|
T Consensus 126 pd~~Ka~~y~traCdl~~~~aCf~LS~m~~~g~~k~~t~ap~~g~p~~~~~~~~~~kDMdka~qfa~kACel~~~~aCAN 205 (248)
T KOG4014|consen 126 PDSEKAERYMTRACDLEDGEACFLLSTMYMGGKEKFKTNAPGEGKPLDRAELGSLSKDMDKALQFAIKACELDIPQACAN 205 (248)
T ss_pred CCcHHHHHHHHHhccCCCchHHHHHHHHHhccchhhcccCCCCCCCcchhhhhhhhHhHHHHHHHHHHHHhcCChHHHhh
Confidence 259999999999999999999999999999761 2688999999999999999999999
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHHHC
Q 019340 209 LALCLHRGRGVDFNLQEAARWYLRAAEG 236 (342)
Q Consensus 209 lg~~~~~g~~~~~~~~~A~~~~~~A~~~ 236 (342)
+..+|..|.|+++|.++|..+-.+|.+.
T Consensus 206 ~SrMyklGDGv~Kde~~Aekyk~rA~e~ 233 (248)
T KOG4014|consen 206 VSRMYKLGDGVPKDEDQAEKYKDRAKEI 233 (248)
T ss_pred HHHHHHccCCCCccHHHHHHHHHHHHHH
Confidence 9999999999999999999999998753
No 41
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.57 E-value=1.3e-12 Score=117.66 Aligned_cols=238 Identities=14% Similarity=0.111 Sum_probs=190.1
Q ss_pred HhhCCChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcC
Q 019340 73 AASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEM 150 (342)
Q Consensus 73 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~ 150 (342)
.-.|-.|+...+...+...++.-+.++. .+..+|.+|.+ ..+.++....|.+|.+++ +++.+++.|.+++-.
T Consensus 334 tF~fL~g~~~~a~~d~~~~I~l~~~~~~--lyI~~a~~y~d----~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL 407 (606)
T KOG0547|consen 334 TFHFLKGDSLGAQEDFDAAIKLDPAFNS--LYIKRAAAYAD----ENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLL 407 (606)
T ss_pred hhhhhcCCchhhhhhHHHHHhcCcccch--HHHHHHHHHhh----hhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHH
Confidence 3356778888888777766666554333 36778999998 689999999999999985 899999999999999
Q ss_pred CCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHH--cCCHHHHHHHHHHHhcCCCCCCCHHHH
Q 019340 151 DKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASI--AGHVRAQYQLALCLHRGRGVDFNLQEA 226 (342)
Q Consensus 151 ~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A 226 (342)
+++++|+.=|++++.+ .+.-++..++.+.+ ....+.++...|+.+.. +..++++...|.++.+ .+++++|
T Consensus 408 ~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Y--r~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtD----qqqFd~A 481 (606)
T KOG0547|consen 408 QQYEEAIADFQKAISLDPENAYAYIQLCCALY--RQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTD----QQQFDKA 481 (606)
T ss_pred HHHHHHHHHHHHHhhcChhhhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhh----HHhHHHH
Confidence 9999999999999877 55667777887777 77899999999999988 4789999999999988 7799999
Q ss_pred HHHHHHHHHCCCH--------HHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCC--HHHHHHHHHHhhhcCCHHHHHH
Q 019340 227 ARWYLRAAEGGYV--------RAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGH--GKAQLEHGLGLFTEGEMMKAVV 296 (342)
Q Consensus 227 ~~~~~~A~~~~~~--------~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~Lg~~~~~~~~~~~A~~ 296 (342)
++.|.+|+++... .-+..-|.+..+ -.+|+.+|...+++|++.++ ..++..||++..+.|+.++|++
T Consensus 482 ~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~q---wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAie 558 (606)
T KOG0547|consen 482 VKQYDKAIELEPREHLIIVNAAPLVHKALLVLQ---WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIE 558 (606)
T ss_pred HHHHHHHHhhccccccccccchhhhhhhHhhhc---hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHH
Confidence 9999999987432 233344444433 24699999999999999865 6788999999999999999999
Q ss_pred HHHHHHHcCcHHHHHHHHHHHhhcChhcH
Q 019340 297 YLELATRAGETAADHVKNVILQQLSATSR 325 (342)
Q Consensus 297 ~~~~a~~~~~~~a~~~~~~~~~~~~~~~~ 325 (342)
+|++++.+............+..-...+.
T Consensus 559 lFEksa~lArt~~E~~~a~s~aeAAraq~ 587 (606)
T KOG0547|consen 559 LFEKSAQLARTESEMVHAYSLAEAARAQI 587 (606)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhhhH
Confidence 99999988665555444444433333333
No 42
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.56 E-value=4.5e-12 Score=122.52 Aligned_cols=260 Identities=12% Similarity=0.040 Sum_probs=190.6
Q ss_pred cHHHHHHHHhhCCChhHHhhHHHHHHHHHHhCc-CCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC---CHHHH
Q 019340 65 PFDVLNKIAASFTLPQLRAASLVCKSWNDALRP-LREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG---STLAM 140 (342)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~ 140 (342)
|.....-+...|-.+++..+..+....++.... .-.+.++|++|.+|.. .||+++|..+|.+++..+ ..-.+
T Consensus 270 P~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha----~Gd~ekA~~yY~~s~k~~~d~~~l~~ 345 (1018)
T KOG2002|consen 270 PVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHA----QGDFEKAFKYYMESLKADNDNFVLPL 345 (1018)
T ss_pred cHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHh----hccHHHHHHHHHHHHccCCCCccccc
Confidence 433333444467889999988877766665422 2246789999999999 699999999999999863 36788
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcC--CccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHh
Q 019340 141 VDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQA--QPANAEEAVKLLYQASIA--GHVRAQYQLALCLH 214 (342)
Q Consensus 141 ~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g--~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~ 214 (342)
+.||.+|...|+++.|+.+|++..+. ++.+.+.-||.+|... .....++|..+..++.+. .+.+++..|+.+|.
T Consensus 346 ~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e 425 (1018)
T KOG2002|consen 346 VGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLE 425 (1018)
T ss_pred cchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 99999999999999999999999865 8899999999999832 123568888999988875 47889999999998
Q ss_pred cCCCCCCCHHHHHHHHHHHHHC-------CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc-----CCH-------
Q 019340 215 RGRGVDFNLQEAARWYLRAAEG-------GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC-----GHG------- 275 (342)
Q Consensus 215 ~g~~~~~~~~~A~~~~~~A~~~-------~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~-----~~~------- 275 (342)
. .|...++.+|.+|++. -.+...+|+|..++. .+++.+|...|+.|... +.-
T Consensus 426 ~-----~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~----~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~l 496 (1018)
T KOG2002|consen 426 Q-----TDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFR----LGNIEKALEHFKSALGKLLEVANKDEGKSTNL 496 (1018)
T ss_pred h-----cChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHH----hcChHHHHHHHHHHhhhhhhhcCccccccchh
Confidence 4 5677778888888752 256778888888754 33888888888888653 111
Q ss_pred HHHHHHHHHhhhcCCHHHHHHHHHHHHHc--CcHHHHHHHHHHHhhcChhcHHHHHHHHHhhhcCC
Q 019340 276 KAQLEHGLGLFTEGEMMKAVVYLELATRA--GETAADHVKNVILQQLSATSRDRAMLVVDSWRAMP 339 (342)
Q Consensus 276 ~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 339 (342)
.-.|||+.++...++++.|...|+..+.. |+.++...++.+. .......+|....+..+...
T Consensus 497 t~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma--~~k~~~~ea~~~lk~~l~~d 560 (1018)
T KOG2002|consen 497 TLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMA--RDKNNLYEASLLLKDALNID 560 (1018)
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHH--HhccCcHHHHHHHHHHHhcc
Confidence 23688888888888888888888888776 4455554444222 23344555555555554433
No 43
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.55 E-value=3.4e-12 Score=114.14 Aligned_cols=196 Identities=17% Similarity=0.115 Sum_probs=162.8
Q ss_pred CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHH--HHhCCCHHHHHHH
Q 019340 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQ--AAVLGDPAGQFNL 175 (342)
Q Consensus 100 ~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~--a~~~~~~~a~~~L 175 (342)
++.++.+-|.+-.. .+|+++|.++|+.|+..+ ..++++++|..+...|+.++|+.+|-+ ++-.++.+.++.+
T Consensus 489 n~~a~~nkgn~~f~----ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qi 564 (840)
T KOG2003|consen 489 NAAALTNKGNIAFA----NGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQI 564 (840)
T ss_pred CHHHhhcCCceeee----cCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 45566666655444 589999999999999864 679999999999999999999999988 5677999999999
Q ss_pred HHHHHcCCccCHHHHHHHHHHHHH--cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHc
Q 019340 176 GISYLQAQPANAEEAVKLLYQASI--AGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSF 251 (342)
Q Consensus 176 g~~~~~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~ 251 (342)
+.+|. ...++.+|++||.++.. +.+|..+..||.+|.+ .+|-..|++++-..-.- -+...--+||..|..
T Consensus 565 aniye--~led~aqaie~~~q~~slip~dp~ilskl~dlydq----egdksqafq~~ydsyryfp~nie~iewl~ayyid 638 (840)
T KOG2003|consen 565 ANIYE--LLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQ----EGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYID 638 (840)
T ss_pred HHHHH--HhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhc----ccchhhhhhhhhhcccccCcchHHHHHHHHHHHh
Confidence 99999 88899999999999765 6899999999999987 77888888887665543 356667788888865
Q ss_pred CCCCcccHHHHHHHHHHHHHcC--CHHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCcHHH
Q 019340 252 GEGLPLSHRQARKWMKRAADCG--HGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAA 309 (342)
Q Consensus 252 g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~~a 309 (342)
.+=.++|+.||++|.-.. .......++.++...|+|.+|+..|+..-+.-+.+.
T Consensus 639 ----tqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedl 694 (840)
T KOG2003|consen 639 ----TQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDL 694 (840)
T ss_pred ----hHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccch
Confidence 346889999999997653 355567889999999999999999999887755443
No 44
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=8.2e-12 Score=114.47 Aligned_cols=262 Identities=13% Similarity=0.047 Sum_probs=209.5
Q ss_pred CCcHHHHHHHHhhCCChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHH
Q 019340 63 SLPFDVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAM 140 (342)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~ 140 (342)
..+..+..++..+|...++.+-..++...++..+-.. ...-..+|-++..| +.-+=+.+=.+.++. ..+..|
T Consensus 242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~-~~~~~~ia~l~el~-----~~n~Lf~lsh~LV~~yP~~a~sW 315 (611)
T KOG1173|consen 242 ENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHL-PCLPLHIACLYELG-----KSNKLFLLSHKLVDLYPSKALSW 315 (611)
T ss_pred hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCc-chHHHHHHHHHHhc-----ccchHHHHHHHHHHhCCCCCcch
Confidence 3456677888889999999999888888887765433 34445678666664 333333333333443 467889
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcC
Q 019340 141 VDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLALCLHRG 216 (342)
Q Consensus 141 ~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g 216 (342)
+.+|.-|...+++++|..+|-|+... ....||..+|..+. ..+..++|+.+|.+|.+. |...-...+|.=|..
T Consensus 316 ~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa--~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~- 392 (611)
T KOG1173|consen 316 FAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFA--GEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMR- 392 (611)
T ss_pred hhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhh--hcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHH-
Confidence 99999999999999999999998765 56788988898888 889999999999999884 666667778888876
Q ss_pred CCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc----CC-----HHHHHHHHHHh
Q 019340 217 RGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC----GH-----GKAQLEHGLGL 285 (342)
Q Consensus 217 ~~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~~-----~~a~~~Lg~~~ 285 (342)
.++.+.|.++|..|... .++.....+|.+... .+.+.+|..||+.++.. .+ .+-+.|||.+|
T Consensus 393 ---t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~----~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~ 465 (611)
T KOG1173|consen 393 ---TNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYT----YEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAY 465 (611)
T ss_pred ---hccHHHHHHHHHHHHhcCCCcchhhhhhhheeeh----HhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHH
Confidence 78999999999999876 689999999999854 33999999999999842 11 23368999999
Q ss_pred hhcCCHHHHHHHHHHHHHcCcHHHHHHHHHHHhhcChhcHHHHHHHHHhhhcCCC
Q 019340 286 FTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPS 340 (342)
Q Consensus 286 ~~~~~~~~A~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 340 (342)
...+.+++|+.+|++++...+.++.+.-+..+.+...+..+.|++.+.+-+.+.|
T Consensus 466 Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p 520 (611)
T KOG1173|consen 466 RKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKP 520 (611)
T ss_pred HHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCC
Confidence 9999999999999999999988888888888888888999999997776655544
No 45
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.50 E-value=1.7e-11 Score=100.95 Aligned_cols=160 Identities=14% Similarity=0.049 Sum_probs=137.4
Q ss_pred cHHHHHHHHhhCCChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHH
Q 019340 65 PFDVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVD 142 (342)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~ 142 (342)
....+..+...+..|++..|...+.+.++..+. ...++..++.+|.. .++.+.|.+.|++|+.+ ++.+.+.|
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs--~~~a~~~~A~~Yq~----~Ge~~~A~e~YrkAlsl~p~~GdVLNN 108 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPS--YYLAHLVRAHYYQK----LGENDLADESYRKALSLAPNNGDVLNN 108 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc--cHHHHHHHHHHHHH----cCChhhHHHHHHHHHhcCCCccchhhh
Confidence 445566777788999999999999888877655 78899999999999 68999999999999997 58999999
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHhC----CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcC
Q 019340 143 AGLMYWEMDKKEAAISLYRQAAVL----GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLALCLHRG 216 (342)
Q Consensus 143 lg~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g 216 (342)
.|..++..|++++|..+|++|+.. ..+..+-|+|.|-. ..|+++.|..+|+++++. ..+.+...++.....
T Consensus 109 YG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal--~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~- 185 (250)
T COG3063 109 YGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCAL--KAGQFDQAEEYLKRALELDPQFPPALLELARLHYK- 185 (250)
T ss_pred hhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHh--hcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHh-
Confidence 999999999999999999999976 45789999999999 899999999999999885 578888888888776
Q ss_pred CCCCCCHHHHHHHHHHHHHC
Q 019340 217 RGVDFNLQEAARWYLRAAEG 236 (342)
Q Consensus 217 ~~~~~~~~~A~~~~~~A~~~ 236 (342)
.+++..|..++++-...
T Consensus 186 ---~~~y~~Ar~~~~~~~~~ 202 (250)
T COG3063 186 ---AGDYAPARLYLERYQQR 202 (250)
T ss_pred ---cccchHHHHHHHHHHhc
Confidence 55677777776665444
No 46
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.48 E-value=5.6e-13 Score=118.41 Aligned_cols=210 Identities=16% Similarity=0.071 Sum_probs=106.3
Q ss_pred CChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC-CCHHHHHHHHHHHhcCCCHHH
Q 019340 77 TLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR-GSTLAMVDAGLMYWEMDKKEA 155 (342)
Q Consensus 77 ~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~-~~~~a~~~lg~~~~~~~~~~~ 155 (342)
..+++..|...+...++.... .+..+..++.++. .+++++|+.+++++.+. +++..+..+..++...+++++
T Consensus 56 ~~~~~~~A~~ay~~l~~~~~~--~~~~~~~l~~l~~-----~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 128 (280)
T PF13429_consen 56 SLGDYDEAIEAYEKLLASDKA--NPQDYERLIQLLQ-----DGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDE 128 (280)
T ss_dssp ---------------------------------------------------------------------H-HHHTT-HHH
T ss_pred ccccccccccccccccccccc--ccccccccccccc-----cccccccccccccccccccccchhhHHHHHHHHHhHHHH
Confidence 457777887777766655433 4455555666643 47999999999998875 466777778888899999999
Q ss_pred HHHHHHHHHhC----CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHH--cCCHHHHHHHHHHHhcCCCCCCCHHHHHHH
Q 019340 156 AISLYRQAAVL----GDPAGQFNLGISYLQAQPANAEEAVKLLYQASI--AGHVRAQYQLALCLHRGRGVDFNLQEAARW 229 (342)
Q Consensus 156 A~~~~~~a~~~----~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~ 229 (342)
+...++++... .++..++.+|.++. ..|+.++|+.+|+++++ ++++.+...++.++.. .++.+++...
T Consensus 129 ~~~~l~~~~~~~~~~~~~~~~~~~a~~~~--~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~----~~~~~~~~~~ 202 (280)
T PF13429_consen 129 AEELLEKLEELPAAPDSARFWLALAEIYE--QLGDPDKALRDYRKALELDPDDPDARNALAWLLID----MGDYDEAREA 202 (280)
T ss_dssp HHHHHHHHHH-T---T-HHHHHHHHHHHH--HCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCT----TCHHHHHHHH
T ss_pred HHHHHHHHHhccCCCCCHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----CCChHHHHHH
Confidence 99999997643 57888999999999 89999999999999987 5689999999999976 6678876666
Q ss_pred HHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhhcCCHHHHHHHHHHHHH
Q 019340 230 YLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATR 303 (342)
Q Consensus 230 ~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~ 303 (342)
+...... .++..+..+|.+|.. .+++++|+.+|+++... +++..+..+|.++...|+.++|..+++++.+
T Consensus 203 l~~~~~~~~~~~~~~~~la~~~~~----lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 203 LKRLLKAAPDDPDLWDALAAAYLQ----LGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHH-HTSCCHCHHHHHHHHH----HT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-----------------
T ss_pred HHHHHHHCcCHHHHHHHHHHHhcc----cccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 6665543 466778889999964 33999999999999884 6799999999999999999999999999875
No 47
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.46 E-value=2.1e-11 Score=114.24 Aligned_cols=212 Identities=19% Similarity=0.154 Sum_probs=114.7
Q ss_pred CChhHHhhHHHHHHHHHHhCcC-----CC-HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC-----C--C---HHHH
Q 019340 77 TLPQLRAASLVCKSWNDALRPL-----RE-AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR-----G--S---TLAM 140 (342)
Q Consensus 77 ~~~~~~~a~~~~~~~~~~~~~~-----~~-a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~-----~--~---~~a~ 140 (342)
..|++..|..+|+..++...+. .. +..+..+|.+|.. .+++++|+..|++|+.. | + +..+
T Consensus 211 ~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~----~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l 286 (508)
T KOG1840|consen 211 VQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRS----LGKYDEAVNLYEEALTIREEVFGEDHPAVAATL 286 (508)
T ss_pred HhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHH----hccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 5566666666666655553211 11 1233336666666 46666666666666653 1 2 2345
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhC-------CCH---HHHHHHHHHHHcCCccCHHHHHHHHHHHHHc-------CC-
Q 019340 141 VDAGLMYWEMDKKEAAISLYRQAAVL-------GDP---AGQFNLGISYLQAQPANAEEAVKLLYQASIA-------GH- 202 (342)
Q Consensus 141 ~~lg~~~~~~~~~~~A~~~~~~a~~~-------~~~---~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~-------~~- 202 (342)
.+||.+|...|++++|..++++|++. .++ ..+.+++.++. ..+++++|+.+|+++++. .+
T Consensus 287 ~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~--~~~~~Eea~~l~q~al~i~~~~~g~~~~ 364 (508)
T KOG1840|consen 287 NNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQ--SMNEYEEAKKLLQKALKIYLDAPGEDNV 364 (508)
T ss_pred HHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHH--HhcchhHHHHHHHHHHHHHHhhccccch
Confidence 56666666666666666666666532 222 23444455544 556666666666665441 12
Q ss_pred --HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC----------CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHH
Q 019340 203 --VRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG----------GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAA 270 (342)
Q Consensus 203 --~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~----------~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~ 270 (342)
+....+||.+|.. .+.+++|.++|++|+.. +.....++||..|.+.. .+.+|.+.|..+.
T Consensus 365 ~~a~~~~nl~~l~~~----~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k----~~~~a~~l~~~~~ 436 (508)
T KOG1840|consen 365 NLAKIYANLAELYLK----MGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELK----KYEEAEQLFEEAK 436 (508)
T ss_pred HHHHHHHHHHHHHHH----hcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhc----ccchHHHHHHHHH
Confidence 3345566666665 55666666666666642 12345556666664432 3444444444433
Q ss_pred H------cCC---HHHHHHHHHHhhhcCCHHHHHHHHHHHH
Q 019340 271 D------CGH---GKAQLEHGLGLFTEGEMMKAVVYLELAT 302 (342)
Q Consensus 271 ~------~~~---~~a~~~Lg~~~~~~~~~~~A~~~~~~a~ 302 (342)
. .++ ...+.||+.+|..+|++++|..+..+++
T Consensus 437 ~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 437 DIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 2 222 2345566666666666666666666665
No 48
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.44 E-value=2.1e-10 Score=110.43 Aligned_cols=251 Identities=14% Similarity=0.092 Sum_probs=181.9
Q ss_pred HHHHHHHhhCCChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHH
Q 019340 67 DVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAG 144 (342)
Q Consensus 67 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg 144 (342)
.++-.+-.+|..|++.+|..++...++..+. ++.+++.||.+|.+ .||.++++.++..|+.+ ++.+-|..++
T Consensus 141 ~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~--~~~ay~tL~~IyEq----rGd~eK~l~~~llAAHL~p~d~e~W~~la 214 (895)
T KOG2076|consen 141 QLLGEANNLFARGDLEEAEEILMEVIKQDPR--NPIAYYTLGEIYEQ----RGDIEKALNFWLLAAHLNPKDYELWKRLA 214 (895)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCcc--chhhHHHHHHHHHH----cccHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence 3455666688999999999999999998766 88999999999999 58999999999999987 4889999999
Q ss_pred HHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHcCCH-H------HHHHHHHHHhc
Q 019340 145 LMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIAGHV-R------AQYQLALCLHR 215 (342)
Q Consensus 145 ~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~~~~-~------a~~~lg~~~~~ 215 (342)
......|++++|+-+|.+|+.. .+..-.+.-..+|. ..|+...|+..|++.+....+ + .....+..+..
T Consensus 215 dls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~--~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~ 292 (895)
T KOG2076|consen 215 DLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQ--KTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFIT 292 (895)
T ss_pred HHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHH--HhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999977 44566667777777 777888888888877654320 0 00010111110
Q ss_pred CCCCCCCHHHHHHHHHHHH-------------------------------------------------------------
Q 019340 216 GRGVDFNLQEAARWYLRAA------------------------------------------------------------- 234 (342)
Q Consensus 216 g~~~~~~~~~A~~~~~~A~------------------------------------------------------------- 234 (342)
..+-+.|++.+..++
T Consensus 293 ----~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~ 368 (895)
T KOG2076|consen 293 ----HNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALC 368 (895)
T ss_pred ----hhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccc
Confidence 001111111111111
Q ss_pred ------------------------------------H-----CCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc-
Q 019340 235 ------------------------------------E-----GGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC- 272 (342)
Q Consensus 235 ------------------------------------~-----~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~- 272 (342)
+ ..+.+-++.++..|.. .| .+++|+.+|......
T Consensus 369 ~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~-~~---~~~~Al~~l~~i~~~~ 444 (895)
T KOG2076|consen 369 EVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTN-IG---KYKEALRLLSPITNRE 444 (895)
T ss_pred cCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHh-cc---cHHHHHHHHHHHhcCc
Confidence 0 0134455666777744 33 889999999988875
Q ss_pred --CCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHc--CcHHHHHHHHHHHhhcChhcHHHHHHHHHhh
Q 019340 273 --GHGKAQLEHGLGLFTEGEMMKAVVYLELATRA--GETAADHVKNVILQQLSATSRDRAMLVVDSW 335 (342)
Q Consensus 273 --~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~ 335 (342)
++...|+.+|.+|...|.+++|+.+|++++.. ++.|+...++.++..+ +..++|.+.+.++
T Consensus 445 ~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~--g~~EkalEtL~~~ 509 (895)
T KOG2076|consen 445 GYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQL--GNHEKALETLEQI 509 (895)
T ss_pred cccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhc--CCHHHHHHHHhcc
Confidence 44567899999999999999999999999987 4567777777777665 6677777766553
No 49
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.44 E-value=1e-10 Score=116.66 Aligned_cols=264 Identities=9% Similarity=-0.025 Sum_probs=184.8
Q ss_pred cHHHHHHHHhhCCChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC--CHHHHHH
Q 019340 65 PFDVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVD 142 (342)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~ 142 (342)
+.....++...+..|++..|...+.+..+..+. ++.+.+.+..++.. .++.++|+.++++++... +......
T Consensus 34 ~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~--~~~av~dll~l~~~----~G~~~~A~~~~eka~~p~n~~~~~lla 107 (822)
T PRK14574 34 ADTQYDSLIIRARAGDTAPVLDYLQEESKAGPL--QSGQVDDWLQIAGW----AGRDQEVIDVYERYQSSMNISSRGLAS 107 (822)
T ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCcc--chhhHHHHHHHHHH----cCCcHHHHHHHHHhccCCCCCHHHHHH
Confidence 556677888889999999999888888877655 43333366666655 489999999999999754 4455555
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCC
Q 019340 143 AGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVD 220 (342)
Q Consensus 143 lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~ 220 (342)
+|.+|...|++++|++.|+++++. ++++++..|+.+|. ..++.++|+..++++.........+ ++..|.... .
T Consensus 108 lA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~--~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~--~ 182 (822)
T PRK14574 108 AARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQA--DAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRA--T 182 (822)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHh--hcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHh--c
Confidence 688999999999999999999866 77888887777777 8899999999999987764322222 555554322 4
Q ss_pred CCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCC--------------------------------------------
Q 019340 221 FNLQEAARWYLRAAEGG--YVRAMYNTSLCYSFGEG-------------------------------------------- 254 (342)
Q Consensus 221 ~~~~~A~~~~~~A~~~~--~~~a~~~lg~~y~~g~g-------------------------------------------- 254 (342)
.+..+|+..|+++++.. +.+....+..+... .|
T Consensus 183 ~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~-~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~ 261 (822)
T PRK14574 183 DRNYDALQASSEAVRLAPTSEEVLKNHLEILQR-NRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSET 261 (822)
T ss_pred chHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccch
Confidence 45556999999887642 22222222211110 00
Q ss_pred ------------------------------------------CcccHHHHHHHHHHHHHcC---CHHHHHHHHHHhhhcC
Q 019340 255 ------------------------------------------LPLSHRQARKWMKRAADCG---HGKAQLEHGLGLFTEG 289 (342)
Q Consensus 255 ------------------------------------------~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~~~~~~ 289 (342)
.-+++.+++.-|+..-..+ +.-+...+|..|...+
T Consensus 262 ~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~ 341 (822)
T PRK14574 262 ERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRR 341 (822)
T ss_pred hhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcC
Confidence 0012333333333332222 2345678899999999
Q ss_pred CHHHHHHHHHHHHHcC------cHHHHHHHHHHHhhcChhcHHHHHHHHHhhhcCCC
Q 019340 290 EMMKAVVYLELATRAG------ETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPS 340 (342)
Q Consensus 290 ~~~~A~~~~~~a~~~~------~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 340 (342)
++++|...|+.++... +.+......+++.+++.+++++|+.++.++.+.+|
T Consensus 342 ~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p 398 (822)
T PRK14574 342 LPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTP 398 (822)
T ss_pred CcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCC
Confidence 9999999999997653 33444457899999999999999999999998665
No 50
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.44 E-value=1.3e-10 Score=100.13 Aligned_cols=258 Identities=15% Similarity=0.069 Sum_probs=194.0
Q ss_pred CcHHHHHHHHhhCCChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCCC------H
Q 019340 64 LPFDVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGS------T 137 (342)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~------~ 137 (342)
+|.+..+..-. +-..+..+|..++....+.. ...-++++.||.+|.. .|..+.||..-+..++..+ .
T Consensus 35 lsr~Yv~GlNf-LLs~Q~dKAvdlF~e~l~~d--~~t~e~~ltLGnLfRs----RGEvDRAIRiHQ~L~~spdlT~~qr~ 107 (389)
T COG2956 35 LSRDYVKGLNF-LLSNQPDKAVDLFLEMLQED--PETFEAHLTLGNLFRS----RGEVDRAIRIHQTLLESPDLTFEQRL 107 (389)
T ss_pred ccHHHHhHHHH-HhhcCcchHHHHHHHHHhcC--chhhHHHHHHHHHHHh----cchHHHHHHHHHHHhcCCCCchHHHH
Confidence 44444443333 33445567776666666643 2356899999999999 5999999999888777532 3
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCccCHHHHHHHHHHHHHcCCH-------HHHHH
Q 019340 138 LAMVDAGLMYWEMDKKEAAISLYRQAAVLGD--PAGQFNLGISYLQAQPANAEEAVKLLYQASIAGHV-------RAQYQ 208 (342)
Q Consensus 138 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~--~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~~~~-------~a~~~ 208 (342)
.+...||.-|...|=++.|...|...++.+. ..|.-.|-.+|. ..++-++||..-++.+..+.- .-+..
T Consensus 108 lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ--~treW~KAId~A~~L~k~~~q~~~~eIAqfyCE 185 (389)
T COG2956 108 LALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQ--ATREWEKAIDVAERLVKLGGQTYRVEIAQFYCE 185 (389)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHH--HhhHHHHHHHHHHHHHHcCCccchhHHHHHHHH
Confidence 5788999999999999999999999998643 679999999999 889999999999998876533 33445
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCC---HHHHHHHHH
Q 019340 209 LALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGH---GKAQLEHGL 283 (342)
Q Consensus 209 lg~~~~~g~~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~---~~a~~~Lg~ 283 (342)
|+.-+.. ..|.++|..++.||+.. ....+-..+|.++. +.| ++.+|++.++.++++++ ++....|-.
T Consensus 186 LAq~~~~----~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~-~~g---~y~~AV~~~e~v~eQn~~yl~evl~~L~~ 257 (389)
T COG2956 186 LAQQALA----SSDVDRARELLKKALQADKKCVRASIILGRVEL-AKG---DYQKAVEALERVLEQNPEYLSEVLEMLYE 257 (389)
T ss_pred HHHHHhh----hhhHHHHHHHHHHHHhhCccceehhhhhhHHHH-hcc---chHHHHHHHHHHHHhChHHHHHHHHHHHH
Confidence 5555554 67899999999999886 46778899999995 444 99999999999999876 567788999
Q ss_pred HhhhcCCHHHHHHHHHHHHHcCc-HHHHHHHHHHHhhcChhcHHHHHHHHHhhhcCCC
Q 019340 284 GLFTEGEMMKAVVYLELATRAGE-TAADHVKNVILQQLSATSRDRAMLVVDSWRAMPS 340 (342)
Q Consensus 284 ~~~~~~~~~~A~~~~~~a~~~~~-~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 340 (342)
+|...|+.++...++.++.+... .++..-+..+.... .-.+.|+....+-+..+|
T Consensus 258 ~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~--~G~~~Aq~~l~~Ql~r~P 313 (389)
T COG2956 258 CYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQ--EGIDAAQAYLTRQLRRKP 313 (389)
T ss_pred HHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHh--hChHHHHHHHHHHHhhCC
Confidence 99999999999999999998753 33433333333333 335556554444444444
No 51
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.43 E-value=5.7e-10 Score=104.02 Aligned_cols=248 Identities=13% Similarity=0.023 Sum_probs=178.2
Q ss_pred HHHHHhhCCChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHH-HcCCCCcCCHHHHHHHHHHHHhCC-CH--HHHHHHH
Q 019340 69 LNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRF-KHGRGVRKNLDKALDSFLKGAARG-ST--LAMVDAG 144 (342)
Q Consensus 69 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y-~~g~g~~~~~~~A~~~~~~A~~~~-~~--~a~~~lg 144 (342)
+......+..||+.+|........+. .+.+...+.++... .. .++++.|..+|.++.+.. +. ......+
T Consensus 88 ~~~gl~a~~eGd~~~A~k~l~~~~~~---~~~p~l~~llaA~aA~~----~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a 160 (398)
T PRK10747 88 TEQALLKLAEGDYQQVEKLMTRNADH---AEQPVVNYLLAAEAAQQ----RGDEARANQHLERAAELADNDQLPVEITRV 160 (398)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhc---ccchHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhcCCcchHHHHHHHH
Confidence 44455566789999886433332221 23455556664444 44 479999999999999863 22 2223458
Q ss_pred HHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc----------------------
Q 019340 145 LMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA---------------------- 200 (342)
Q Consensus 145 ~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~---------------------- 200 (342)
.++...|++++|+..+++..+. +++.+...++.+|. ..++.++|+..+.+..+.
T Consensus 161 ~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~--~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~ 238 (398)
T PRK10747 161 RIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYI--RTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQ 238 (398)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH--HHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999998765 78999999999998 778888887655554321
Q ss_pred ----------------------CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHcCCCCcc
Q 019340 201 ----------------------GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG-YVRAMYNTSLCYSFGEGLPL 257 (342)
Q Consensus 201 ----------------------~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~~-~~~a~~~lg~~y~~g~g~~~ 257 (342)
.++.+...++..+.. .++.++|...++++++.. ++......+.+. ..
T Consensus 239 ~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~----~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l~------~~ 308 (398)
T PRK10747 239 AMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIE----CDDHDTAQQIILDGLKRQYDERLVLLIPRLK------TN 308 (398)
T ss_pred HHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhcCCCHHHHHHHhhcc------CC
Confidence 244455556666655 678899999999998853 443333333332 23
Q ss_pred cHHHHHHHHHHHHHc--CCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCcHHHH-HHHHHHHhhcChhcHHHHHHHHHh
Q 019340 258 SHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAAD-HVKNVILQQLSATSRDRAMLVVDS 334 (342)
Q Consensus 258 ~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~-~~~~~~~~~~~~~~~~~a~~~~~~ 334 (342)
+.+++++.+++..+. +++.....+|.++...+++++|..+|+++++..|.... ..++.++... ++.++|.+.+++
T Consensus 309 ~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~--g~~~~A~~~~~~ 386 (398)
T PRK10747 309 NPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRL--HKPEEAAAMRRD 386 (398)
T ss_pred ChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHH
Confidence 899999999998876 66888899999999999999999999999999776654 5666666544 778888888877
Q ss_pred hhc
Q 019340 335 WRA 337 (342)
Q Consensus 335 ~~~ 337 (342)
-+.
T Consensus 387 ~l~ 389 (398)
T PRK10747 387 GLM 389 (398)
T ss_pred HHh
Confidence 644
No 52
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.43 E-value=4e-10 Score=105.49 Aligned_cols=250 Identities=11% Similarity=0.023 Sum_probs=168.4
Q ss_pred HHHHHHhhCCChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC-CCH--HHHHHHH
Q 019340 68 VLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR-GST--LAMVDAG 144 (342)
Q Consensus 68 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~-~~~--~a~~~lg 144 (342)
.+.++...+..|++..|........+..+. ....+...|.++.. .++++.|..+|.++.+. ++. .+....+
T Consensus 87 ~~~~glla~~~g~~~~A~~~l~~~~~~~~~--~~~~~llaA~aa~~----~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a 160 (409)
T TIGR00540 87 QTEEALLKLAEGDYAKAEKLIAKNADHAAE--PVLNLIKAAEAAQQ----RGDEARANQHLEEAAELAGNDNILVEIART 160 (409)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhhcCCC--CHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCcCchHHHHHHH
Confidence 355555667888888887666554444322 33445555777666 47888888888888774 222 3444568
Q ss_pred HHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc----------------------
Q 019340 145 LMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA---------------------- 200 (342)
Q Consensus 145 ~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~---------------------- 200 (342)
.++...|++++|...++...+. +++.++..++.+|. ..++.++|+..+.+..+.
T Consensus 161 ~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~--~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~ 238 (409)
T TIGR00540 161 RILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYI--RSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDE 238 (409)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH--HHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888887754 77888888888888 666777666665554432
Q ss_pred ----------------------CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCC--CHHHH--HHHHHHHHcCCC
Q 019340 201 ----------------------GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG--YVRAM--YNTSLCYSFGEG 254 (342)
Q Consensus 201 ----------------------~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~~--~~~a~--~~lg~~y~~g~g 254 (342)
.++..+..++..+.. .+++++|...++++++.. +.... .........
T Consensus 239 ~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~----~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~--- 311 (409)
T TIGR00540 239 AMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLID----CDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLK--- 311 (409)
T ss_pred HHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHH----CCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcC---
Confidence 134445555555554 568999999999999863 22211 111122212
Q ss_pred CcccHHHHHHHHHHHHHc--CCH--HHHHHHHHHhhhcCCHHHHHHHHHH--HHHcCc-HHHHHHHHHHHhhcChhcHHH
Q 019340 255 LPLSHRQARKWMKRAADC--GHG--KAQLEHGLGLFTEGEMMKAVVYLEL--ATRAGE-TAADHVKNVILQQLSATSRDR 327 (342)
Q Consensus 255 ~~~~~~~A~~~~~~a~~~--~~~--~a~~~Lg~~~~~~~~~~~A~~~~~~--a~~~~~-~~a~~~~~~~~~~~~~~~~~~ 327 (342)
+.+.+++++.++++.+. +++ .....||+++...|++++|..+|++ +.+..+ +.....++.++..+ ++.++
T Consensus 312 -~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~--g~~~~ 388 (409)
T TIGR00540 312 -PEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQA--GDKAE 388 (409)
T ss_pred -CCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHc--CCHHH
Confidence 34788999999999876 566 6677999999999999999999994 655543 22333555555444 77888
Q ss_pred HHHHHHhh
Q 019340 328 AMLVVDSW 335 (342)
Q Consensus 328 a~~~~~~~ 335 (342)
|.+++++-
T Consensus 389 A~~~~~~~ 396 (409)
T TIGR00540 389 AAAMRQDS 396 (409)
T ss_pred HHHHHHHH
Confidence 88887764
No 53
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.43 E-value=3.5e-11 Score=112.85 Aligned_cols=220 Identities=19% Similarity=0.141 Sum_probs=170.7
Q ss_pred HHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC-------CCH--HHH-HHHHHHHhcCCCHHHHHHHHHHHHhC-----
Q 019340 102 MVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR-------GST--LAM-VDAGLMYWEMDKKEAAISLYRQAAVL----- 166 (342)
Q Consensus 102 ~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~-------~~~--~a~-~~lg~~~~~~~~~~~A~~~~~~a~~~----- 166 (342)
.....||.+|.. .+++++|+.++++|++. .++ ..+ ..+|.+|...+++++|+..|++|+..
T Consensus 200 ~~~~~La~~y~~----~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~ 275 (508)
T KOG1840|consen 200 RTLRNLAEMYAV----QGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVF 275 (508)
T ss_pred HHHHHHHHHHHH----hccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhc
Confidence 466679999999 69999999999999986 333 233 45999999999999999999999843
Q ss_pred --CC---HHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc-------CC---HHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Q 019340 167 --GD---PAGQFNLGISYLQAQPANAEEAVKLLYQASIA-------GH---VRAQYQLALCLHRGRGVDFNLQEAARWYL 231 (342)
Q Consensus 167 --~~---~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~-------~~---~~a~~~lg~~~~~g~~~~~~~~~A~~~~~ 231 (342)
.+ ...+.+|+.+|. ..|++++|..+++++++- .+ +..+.+++.++.. .+.+++|+.+|+
T Consensus 276 G~~h~~va~~l~nLa~ly~--~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~----~~~~Eea~~l~q 349 (508)
T KOG1840|consen 276 GEDHPAVAATLNNLAVLYY--KQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQS----MNEYEEAKKLLQ 349 (508)
T ss_pred CCCCHHHHHHHHHHHHHHh--ccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHH----hcchhHHHHHHH
Confidence 23 468889999998 899999999999998762 23 3456677777776 678999999999
Q ss_pred HHHHC-------CC---HHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc-----C-----CHHHHHHHHHHhhhcCCH
Q 019340 232 RAAEG-------GY---VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC-----G-----HGKAQLEHGLGLFTEGEM 291 (342)
Q Consensus 232 ~A~~~-------~~---~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~-----~-----~~~a~~~Lg~~~~~~~~~ 291 (342)
++++. .+ +....+||.+|.. .| .+++|..+|++|+.. + -...+.+||..|.+.+++
T Consensus 350 ~al~i~~~~~g~~~~~~a~~~~nl~~l~~~-~g---k~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~ 425 (508)
T KOG1840|consen 350 KALKIYLDAPGEDNVNLAKIYANLAELYLK-MG---KYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKY 425 (508)
T ss_pred HHHHHHHhhccccchHHHHHHHHHHHHHHH-hc---chhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhccc
Confidence 99763 12 4567899999965 33 999999999999874 1 145779999999999999
Q ss_pred HHHHHHHHHHHHc----C--cHH-HHHHHHHHHhhcChhcHHHHHHHHHhh
Q 019340 292 MKAVVYLELATRA----G--ETA-ADHVKNVILQQLSATSRDRAMLVVDSW 335 (342)
Q Consensus 292 ~~A~~~~~~a~~~----~--~~~-a~~~~~~~~~~~~~~~~~~a~~~~~~~ 335 (342)
.+|...|..+..+ | +++ -..+.++.-.+...+..+.|.++...+
T Consensus 426 ~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~ 476 (508)
T KOG1840|consen 426 EEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKV 476 (508)
T ss_pred chHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 9999999888764 2 222 233445555556668888888876554
No 54
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.40 E-value=2.5e-11 Score=111.72 Aligned_cols=221 Identities=14% Similarity=0.054 Sum_probs=170.4
Q ss_pred HHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHH
Q 019340 105 LRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYL 180 (342)
Q Consensus 105 ~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~ 180 (342)
|.-|..+.. .|+..+|+-.|+.|+..+ +.++|..||.++.+..+-..||..+++++++ ++-+++..||..|.
T Consensus 289 f~eG~~lm~----nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSyt 364 (579)
T KOG1125|consen 289 FKEGCNLMK----NGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYT 364 (579)
T ss_pred HHHHHHHHh----cCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHh
Confidence 446666666 578999999999999974 8999999999999999999999999999876 78999999999999
Q ss_pred cCCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCC---CC--CCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHc
Q 019340 181 QAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGR---GV--DFNLQEAARWYLRAAEG----GYVRAMYNTSLCYSF 251 (342)
Q Consensus 181 ~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~---~~--~~~~~~A~~~~~~A~~~----~~~~a~~~lg~~y~~ 251 (342)
..+.-.+|+.++.+=+....+..+...+..-.... +. ...+..-.++|..|+.+ -+++.+.-||.+|..
T Consensus 365 --Neg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~l 442 (579)
T KOG1125|consen 365 --NEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNL 442 (579)
T ss_pred --hhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhc
Confidence 88888999999998776554444333221111111 11 11234455666666654 378999999999954
Q ss_pred CCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCcHHHHHHHHHHHhhcChhcHHHHH
Q 019340 252 GEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAM 329 (342)
Q Consensus 252 g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~a~ 329 (342)
.+++++|+.||+.|+.. ++..-|+.||..+.+..+.++|+..|.+|+++.|......+.+...++..+.+.+|.
T Consensus 443 ----s~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~ 518 (579)
T KOG1125|consen 443 ----SGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAV 518 (579)
T ss_pred ----chHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHH
Confidence 44999999999999876 567778999999999999999999999999996655544455556667778888887
Q ss_pred HHHHhh
Q 019340 330 LVVDSW 335 (342)
Q Consensus 330 ~~~~~~ 335 (342)
.-+-+.
T Consensus 519 ~hlL~A 524 (579)
T KOG1125|consen 519 KHLLEA 524 (579)
T ss_pred HHHHHH
Confidence 754443
No 55
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.39 E-value=9.2e-11 Score=105.99 Aligned_cols=221 Identities=15% Similarity=0.096 Sum_probs=180.3
Q ss_pred HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHH
Q 019340 101 AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLG 176 (342)
Q Consensus 101 a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg 176 (342)
+.++...|..+.. .+|...|.+-|.+++.+. +...+..+|.+|....+.++..+.|.+|.+. .+++.++.-|
T Consensus 326 A~al~~~gtF~fL----~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRg 401 (606)
T KOG0547|consen 326 AEALLLRGTFHFL----KGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRG 401 (606)
T ss_pred HHHHHHhhhhhhh----cCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHH
Confidence 4566666666655 789999999999999985 4445789999999999999999999999866 7899999999
Q ss_pred HHHHcCCccCHHHHHHHHHHHHHcC--CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcC
Q 019340 177 ISYLQAQPANAEEAVKLLYQASIAG--HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFG 252 (342)
Q Consensus 177 ~~~~~g~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g 252 (342)
.+++ ..+++++|+.-|++++..+ +.-++..++...+. ...+.++...|+.+... .-+..+...|.++..
T Consensus 402 Qm~f--lL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr----~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtD- 474 (606)
T KOG0547|consen 402 QMRF--LLQQYEEAIADFQKAISLDPENAYAYIQLCCALYR----QHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTD- 474 (606)
T ss_pred HHHH--HHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhh-
Confidence 9999 8999999999999988765 56666777766555 55799999999999886 678899999999965
Q ss_pred CCCcccHHHHHHHHHHHHHcCCH--------HHHHHHHHHhhh-cCCHHHHHHHHHHHHHcCcHHHHHHHHHHHhhcChh
Q 019340 253 EGLPLSHRQARKWMKRAADCGHG--------KAQLEHGLGLFT-EGEMMKAVVYLELATRAGETAADHVKNVILQQLSAT 323 (342)
Q Consensus 253 ~g~~~~~~~A~~~~~~a~~~~~~--------~a~~~Lg~~~~~-~~~~~~A~~~~~~a~~~~~~~a~~~~~~~~~~~~~~ 323 (342)
.+++++|.+.|.+|++..+. ..+.+-|.+..+ .+++..|...+++|++.+|.--....++....+..+
T Consensus 475 ---qqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~ 551 (606)
T KOG0547|consen 475 ---QQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRG 551 (606)
T ss_pred ---HHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHh
Confidence 44999999999999987443 233333333322 589999999999999999877777777777778889
Q ss_pred cHHHHHHHHHhh
Q 019340 324 SRDRAMLVVDSW 335 (342)
Q Consensus 324 ~~~~a~~~~~~~ 335 (342)
+.++|+++.+.-
T Consensus 552 ~i~eAielFEks 563 (606)
T KOG0547|consen 552 KIDEAIELFEKS 563 (606)
T ss_pred hHHHHHHHHHHH
Confidence 999999987754
No 56
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.36 E-value=3e-12 Score=113.23 Aligned_cols=193 Identities=24% Similarity=0.266 Sum_probs=145.6
Q ss_pred CCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHh----CC----CHHHHHHHHHHHhcCC------------------
Q 019340 98 LREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAA----RG----STLAMVDAGLMYWEMD------------------ 151 (342)
Q Consensus 98 ~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~----~~----~~~a~~~lg~~~~~~~------------------ 151 (342)
.|.+.+.-+||..+.. ++.+++|+.+..+-+. +| ...++|+||.+|...|
T Consensus 92 lGEAKssgNLGNtlKv----~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev 167 (639)
T KOG1130|consen 92 LGEAKSSGNLGNTLKV----KGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEV 167 (639)
T ss_pred hccccccccccchhhh----hcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHH
Confidence 4556666667776655 7889999888777554 23 5678899999998765
Q ss_pred --CHHHHHHHHHHHHhC----CC----HHHHHHHHHHHHcCCccCHHHHHHHHHHHHH----cCC----HHHHHHHHHHH
Q 019340 152 --KKEAAISLYRQAAVL----GD----PAGQFNLGISYLQAQPANAEEAVKLLYQASI----AGH----VRAQYQLALCL 213 (342)
Q Consensus 152 --~~~~A~~~~~~a~~~----~~----~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~----~~~----~~a~~~lg~~~ 213 (342)
.++.|+++|..-+++ ++ ..++-+||..|+ -.||++.||..-+.-+. -|+ -+|+.+||.|+
T Consensus 168 ~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyY--lLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~h 245 (639)
T KOG1130|consen 168 TSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYY--LLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCH 245 (639)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceee--eeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhh
Confidence 366677777766543 43 346677888888 78899999887765332 233 46788999999
Q ss_pred hcCCCCCCCHHHHHHHHHHHHH----CC----CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH--------cCCHHH
Q 019340 214 HRGRGVDFNLQEAARWYLRAAE----GG----YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAAD--------CGHGKA 277 (342)
Q Consensus 214 ~~g~~~~~~~~~A~~~~~~A~~----~~----~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~--------~~~~~a 277 (342)
.. .++++.|+++|++++. .+ .+..+|.||..|.. .+++.+|+.|+.+=+. .|...+
T Consensus 246 if----lg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytl----l~e~~kAI~Yh~rHLaIAqeL~DriGe~Ra 317 (639)
T KOG1130|consen 246 IF----LGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTL----LKEVQKAITYHQRHLAIAQELEDRIGELRA 317 (639)
T ss_pred hh----hcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHH----HHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 86 7899999999998754 34 46678999999965 4589999999887433 266889
Q ss_pred HHHHHHHhhhcCCHHHHHHHHHHHHHc
Q 019340 278 QLEHGLGLFTEGEMMKAVVYLELATRA 304 (342)
Q Consensus 278 ~~~Lg~~~~~~~~~~~A~~~~~~a~~~ 304 (342)
++.||..|...|+.++|+.+.++.++.
T Consensus 318 cwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 318 CWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 999999999999999999999888764
No 57
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.32 E-value=5.6e-09 Score=107.13 Aligned_cols=250 Identities=9% Similarity=-0.048 Sum_probs=120.7
Q ss_pred CChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHhcCCCH
Q 019340 77 TLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG---STLAMVDAGLMYWEMDKK 153 (342)
Q Consensus 77 ~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~lg~~~~~~~~~ 153 (342)
..|+..+|..++....+... .++...+..|-..|.. .+++++|+..|......+ +...+..|-..|...|++
T Consensus 484 k~G~vd~A~~vf~eM~~~Gv-~PdvvTynaLI~gy~k----~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~ 558 (1060)
T PLN03218 484 KSGKVDAMFEVFHEMVNAGV-EANVHTFGALIDGCAR----AGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAV 558 (1060)
T ss_pred hCcCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHH----CcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCH
Confidence 45556666555544443322 2344455445445544 355666666665555543 444455555555555555
Q ss_pred HHHHHHHHHHHhC-----CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHcC---CHHHHHHHHHHHhcCC--------
Q 019340 154 EAAISLYRQAAVL-----GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIAG---HVRAQYQLALCLHRGR-------- 217 (342)
Q Consensus 154 ~~A~~~~~~a~~~-----~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~-------- 217 (342)
++|.+.|...... .+...+..|-.+|. ..+++++|.+.|++..+.+ ++..+..+...|...+
T Consensus 559 deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~--k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~l 636 (1060)
T PLN03218 559 DRAFDVLAEMKAETHPIDPDHITVGALMKACA--NAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSI 636 (1060)
T ss_pred HHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHH--HCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHH
Confidence 5555555555431 22333333444444 4445555555555544433 2334444443433300
Q ss_pred -----------------------CCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH
Q 019340 218 -----------------------GVDFNLQEAARWYLRAAEGG---YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAAD 271 (342)
Q Consensus 218 -----------------------~~~~~~~~A~~~~~~A~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~ 271 (342)
...+++++|.+.+....+.| +...+..|..+|... ++.++|...|++..+
T Consensus 637 f~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~----G~~eeA~~lf~eM~~ 712 (1060)
T PLN03218 637 YDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNA----KNWKKALELYEDIKS 712 (1060)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC----CCHHHHHHHHHHHHH
Confidence 00334555555555555443 334444555555331 155555555555543
Q ss_pred c---CCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHcC-cHHHHHHHHHHHhhcChhcHHHHHHHHHhhhc
Q 019340 272 C---GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAG-ETAADHVKNVILQQLSATSRDRAMLVVDSWRA 337 (342)
Q Consensus 272 ~---~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~-~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 337 (342)
. .+...+..|...|...|++++|..+|+...+.| .++...+..++......++.++|..++.+..+
T Consensus 713 ~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k 782 (1060)
T PLN03218 713 IKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKE 782 (1060)
T ss_pred cCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 2 234455555555555666666666666555443 23444444444444455555556555555543
No 58
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.31 E-value=5.8e-10 Score=96.17 Aligned_cols=210 Identities=17% Similarity=0.083 Sum_probs=165.8
Q ss_pred cCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCC------HHHHHHHHHHHHcCCccCHHH
Q 019340 118 RKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGD------PAGQFNLGISYLQAQPANAEE 189 (342)
Q Consensus 118 ~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~------~~a~~~Lg~~~~~g~~~~~~~ 189 (342)
..+.++|++.|...++.+ ..++++.||.+|...|+.+.||..-+..++..+ .-|.+.||.=|+ ..|=++.
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym--~aGl~DR 125 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYM--AAGLLDR 125 (389)
T ss_pred hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHH--HhhhhhH
Confidence 578999999999999864 678899999999999999999998777765532 358888999999 8899999
Q ss_pred HHHHHHHHHHcC--CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCCHHHHH-------HHHHHHHcCCCCcccHH
Q 019340 190 AVKLLYQASIAG--HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMY-------NTSLCYSFGEGLPLSHR 260 (342)
Q Consensus 190 A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~~~~~a~~-------~lg~~y~~g~g~~~~~~ 260 (342)
|...|...++.+ -..|.-.|-.+|.. .+++++|+..-++.+..+.-.-.. .|+..+.. ..|.+
T Consensus 126 AE~~f~~L~de~efa~~AlqqLl~IYQ~----treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~----~~~~d 197 (389)
T COG2956 126 AEDIFNQLVDEGEFAEGALQQLLNIYQA----TREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALA----SSDVD 197 (389)
T ss_pred HHHHHHHHhcchhhhHHHHHHHHHHHHH----hhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhh----hhhHH
Confidence 999999999854 35788899999987 889999999999988876443333 44444432 45999
Q ss_pred HHHHHHHHHHHc--CCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCcHHHHH-HHHHHHhhcChhcHHHHHHHHHhhhc
Q 019340 261 QARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADH-VKNVILQQLSATSRDRAMLVVDSWRA 337 (342)
Q Consensus 261 ~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~-~~~~~~~~~~~~~~~~a~~~~~~~~~ 337 (342)
+|+.++++|+.. ..+.+-..||.++...|++++|++.+++.++.++.---. ...+...+-..++.++.+..+.+...
T Consensus 198 ~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~ 277 (389)
T COG2956 198 RARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME 277 (389)
T ss_pred HHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 999999999876 457788999999999999999999999999998754322 22223333344677777666665543
No 59
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.31 E-value=7.8e-09 Score=106.13 Aligned_cols=247 Identities=12% Similarity=-0.026 Sum_probs=177.1
Q ss_pred hCCChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHhcCC
Q 019340 75 SFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG---STLAMVDAGLMYWEMD 151 (342)
Q Consensus 75 ~~~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~lg~~~~~~~ 151 (342)
....+++..|..++....+... .++...+..|-.+|.. .++.++|..+|+...+.| +...+..+...|.+.|
T Consensus 447 ~~k~g~~e~A~~lf~~M~~~Gl-~pD~~tynsLI~~y~k----~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G 521 (1060)
T PLN03218 447 CASSQDIDGALRVLRLVQEAGL-KADCKLYTTLISTCAK----SGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAG 521 (1060)
T ss_pred HHhCcCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHh----CcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCc
Confidence 3467889999888877665543 3566677666677766 489999999999999865 7788889999999999
Q ss_pred CHHHHHHHHHHHHhC---CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHhcCCCCCCCH
Q 019340 152 KKEAAISLYRQAAVL---GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA-----GHVRAQYQLALCLHRGRGVDFNL 223 (342)
Q Consensus 152 ~~~~A~~~~~~a~~~---~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~-----~~~~a~~~lg~~~~~g~~~~~~~ 223 (342)
++++|++.|+...+. -+...+..|-..|. ..+++++|.+.|.+.... .+...+..|-.+|.. .+++
T Consensus 522 ~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~--k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k----~G~l 595 (1060)
T PLN03218 522 QVAKAFGAYGIMRSKNVKPDRVVFNALISACG--QSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACAN----AGQV 595 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHH----CCCH
Confidence 999999999998876 35667777888887 789999999999998652 255677777777766 6678
Q ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcC---CHHHHHHHHHHhhhcCCHHHHHHH
Q 019340 224 QEAARWYLRAAEGG---YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCG---HGKAQLEHGLGLFTEGEMMKAVVY 297 (342)
Q Consensus 224 ~~A~~~~~~A~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~~~~~~~~~~A~~~ 297 (342)
++|.+.|++..+.+ +...+..+...|.. .| +.++|+..|++....| +...+..|...|...|++++|..+
T Consensus 596 deA~elf~~M~e~gi~p~~~tynsLI~ay~k-~G---~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l 671 (1060)
T PLN03218 596 DRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQ-KG---DWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEI 671 (1060)
T ss_pred HHHHHHHHHHHHcCCCCChHHHHHHHHHHHh-cC---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 88999888888765 45566666666654 22 6777777777766542 344555666666666666666666
Q ss_pred HHHHHHcC-cHHHHHHHHHHHhhcChhcHHHHHHHHHhhh
Q 019340 298 LELATRAG-ETAADHVKNVILQQLSATSRDRAMLVVDSWR 336 (342)
Q Consensus 298 ~~~a~~~~-~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~ 336 (342)
++...+.| .++...+..++..+...++.++|.++++++.
T Consensus 672 ~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~ 711 (1060)
T PLN03218 672 LQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIK 711 (1060)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 66666654 2344444455555555566666666665553
No 60
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.31 E-value=4e-09 Score=98.36 Aligned_cols=213 Identities=8% Similarity=-0.101 Sum_probs=165.4
Q ss_pred hhCCChhHHhhHHHHHHHHHHhCcCCCHHHH-HHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcC
Q 019340 74 ASFTLPQLRAASLVCKSWNDALRPLREAMVL-LRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEM 150 (342)
Q Consensus 74 ~~~~~~~~~~a~~~~~~~~~~~~~~~~a~a~-~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~ 150 (342)
.....|++..+...+.+..+..++ +..+. ...+.++.. .+++++|+..+++..+. +++.++..++.+|...
T Consensus 127 aA~~~g~~~~A~~~l~~A~~~~~~--~~~~~~l~~a~l~l~----~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~ 200 (398)
T PRK10747 127 AAQQRGDEARANQHLERAAELADN--DQLPVEITRVRIQLA----RNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRT 200 (398)
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCc--chHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 347889999987666665554333 22222 233778877 58999999999999886 5899999999999999
Q ss_pred CCHHHHHHHHHHHHhC--------------------------------------------CCHHHHHHHHHHHHcCCccC
Q 019340 151 DKKEAAISLYRQAAVL--------------------------------------------GDPAGQFNLGISYLQAQPAN 186 (342)
Q Consensus 151 ~~~~~A~~~~~~a~~~--------------------------------------------~~~~a~~~Lg~~~~~g~~~~ 186 (342)
||+++|++.+.+..+. +++.+...++..+. ..++
T Consensus 201 gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~--~~g~ 278 (398)
T PRK10747 201 GAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLI--ECDD 278 (398)
T ss_pred HhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHH--HCCC
Confidence 9999999666554421 24556666677777 7899
Q ss_pred HHHHHHHHHHHHHcC-CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHH
Q 019340 187 AEEAVKLLYQASIAG-HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQAR 263 (342)
Q Consensus 187 ~~~A~~~~~~a~~~~-~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~ 263 (342)
.++|...++++++.. ++......+.+. .++.++++...++.++. +++.....+|.++.. .+++.+|.
T Consensus 279 ~~~A~~~L~~~l~~~~~~~l~~l~~~l~------~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~----~~~~~~A~ 348 (398)
T PRK10747 279 HDTAQQIILDGLKRQYDERLVLLIPRLK------TNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMK----HGEWQEAS 348 (398)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHhhcc------CCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----CCCHHHHH
Confidence 999999999998853 555444444442 46889999999988876 688889999999976 33999999
Q ss_pred HHHHHHHHcC-CHHHHHHHHHHhhhcCCHHHHHHHHHHHHHc
Q 019340 264 KWMKRAADCG-HGKAQLEHGLGLFTEGEMMKAVVYLELATRA 304 (342)
Q Consensus 264 ~~~~~a~~~~-~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~ 304 (342)
.+|+++++.. +...+..|+.++...|+.++|..+|++++.+
T Consensus 349 ~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 349 LAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 9999999984 4566789999999999999999999999765
No 61
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.30 E-value=3.5e-10 Score=97.77 Aligned_cols=175 Identities=15% Similarity=0.061 Sum_probs=121.4
Q ss_pred CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC--CH---HHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCH--
Q 019340 99 REAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--ST---LAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDP-- 169 (342)
Q Consensus 99 ~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~---~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~-- 169 (342)
..+..++.+|..+.. .+++++|+..|++++... ++ .+++.+|.+|...|++++|+..|+++++. +++
T Consensus 31 ~~~~~~~~~g~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 106 (235)
T TIGR03302 31 WPAEELYEEAKEALD----SGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDA 106 (235)
T ss_pred CCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCch
Confidence 467788888888877 578888888888887753 22 57788888888888888888888888765 333
Q ss_pred -HHHHHHHHHHHcC------CccCHHHHHHHHHHHHHc--CCHHHH---HHHHHHHhcCCCCCCCHHHHHHHHHHHHHCC
Q 019340 170 -AGQFNLGISYLQA------QPANAEEAVKLLYQASIA--GHVRAQ---YQLALCLHRGRGVDFNLQEAARWYLRAAEGG 237 (342)
Q Consensus 170 -~a~~~Lg~~~~~g------~~~~~~~A~~~~~~a~~~--~~~~a~---~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~~ 237 (342)
.+++.+|.++... ..+++++|+..|++++.. ++..+. ..++.++..
T Consensus 107 ~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~---------------------- 164 (235)
T TIGR03302 107 DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNR---------------------- 164 (235)
T ss_pred HHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHH----------------------
Confidence 3788888888731 126778888888887764 333332 222222110
Q ss_pred CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcC-----CHHHHHHHHHHhhhcCCHHHHHHHHHHHHH
Q 019340 238 YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCG-----HGKAQLEHGLGLFTEGEMMKAVVYLELATR 303 (342)
Q Consensus 238 ~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-----~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~ 303 (342)
.......+|.+|.. .| ++.+|+..|+++++.. .+.+++.+|.++...|++++|..+++....
T Consensus 165 ~~~~~~~~a~~~~~-~g---~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 165 LAGKELYVARFYLK-RG---AYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHHHHHHHHHH-cC---ChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 01233467777754 23 8888888888888752 257888888888888888888888776654
No 62
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.30 E-value=6.8e-11 Score=104.82 Aligned_cols=249 Identities=18% Similarity=0.122 Sum_probs=177.0
Q ss_pred HhhCCChhHHhhHHHHHHHHHHhCcC-C-CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHh--------CCCHHHHHH
Q 019340 73 AASFTLPQLRAASLVCKSWNDALRPL-R-EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAA--------RGSTLAMVD 142 (342)
Q Consensus 73 ~~~~~~~~~~~a~~~~~~~~~~~~~~-~-~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~--------~~~~~a~~~ 142 (342)
..++..|+.......++..++...+. . -...+.+||..|.. .+|+++|+++-.--+. .|.+.+.-+
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfy----L~DY~kAl~yH~hDltlar~lgdklGEAKssgN 100 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFY----LKDYEKALKYHTHDLTLARLLGDKLGEAKSSGN 100 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhh----HhhHHHHHhhhhhhHHHHHHhcchhcccccccc
Confidence 34567777777766666555554321 0 12456678887777 6899999988654332 267788899
Q ss_pred HHHHHhcCCCHHHHHHHHHHHH----hCC----CHHHHHHHHHHHHc-CC-----------------ccCHHHHHHHHHH
Q 019340 143 AGLMYWEMDKKEAAISLYRQAA----VLG----DPAGQFNLGISYLQ-AQ-----------------PANAEEAVKLLYQ 196 (342)
Q Consensus 143 lg~~~~~~~~~~~A~~~~~~a~----~~~----~~~a~~~Lg~~~~~-g~-----------------~~~~~~A~~~~~~ 196 (342)
||.++...|.+++|+.+..+-+ +++ ...|+||||.+|.. |. ...++.|+++|+.
T Consensus 101 LGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~e 180 (639)
T KOG1130|consen 101 LGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYME 180 (639)
T ss_pred ccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHH
Confidence 9999999999999999988855 334 46899999999984 21 1235666777776
Q ss_pred HHHc----CC----HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH----CCC----HHHHHHHHHHHHcCCCCcccHH
Q 019340 197 ASIA----GH----VRAQYQLALCLHRGRGVDFNLQEAARWYLRAAE----GGY----VRAMYNTSLCYSFGEGLPLSHR 260 (342)
Q Consensus 197 a~~~----~~----~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~----~~~----~~a~~~lg~~y~~g~g~~~~~~ 260 (342)
-+++ ++ .+++-+||..|+- .+|++.|+.+-+.-+. .|+ -.|+-|||.+|.. ..+++
T Consensus 181 NL~l~~~lgDr~aqGRa~GnLGNTyYl----LGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hif----lg~fe 252 (639)
T KOG1130|consen 181 NLELSEKLGDRLAQGRAYGNLGNTYYL----LGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIF----LGNFE 252 (639)
T ss_pred HHHHHHHhhhHHhhcchhcccCceeee----eccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhh----hcccH
Confidence 4432 33 4566778888775 7899999987665433 244 3578899999954 33999
Q ss_pred HHHHHHHHHHH----cCC----HHHHHHHHHHhhhcCCHHHHHHHHHHHHH--------cCcHHHHHHHHHHHhhcChhc
Q 019340 261 QARKWMKRAAD----CGH----GKAQLEHGLGLFTEGEMMKAVVYLELATR--------AGETAADHVKNVILQQLSATS 324 (342)
Q Consensus 261 ~A~~~~~~a~~----~~~----~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~--------~~~~~a~~~~~~~~~~~~~~~ 324 (342)
.|+++|++++. .++ +..+|.||..|.-..++++|+.|+.+=+. +|...++..++.....+ ++
T Consensus 253 ~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~al--g~ 330 (639)
T KOG1130|consen 253 LAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNAL--GE 330 (639)
T ss_pred hHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--hh
Confidence 99999999754 444 56789999999999999999999987543 25566676666666555 66
Q ss_pred HHHHHHHHHhh
Q 019340 325 RDRAMLVVDSW 335 (342)
Q Consensus 325 ~~~a~~~~~~~ 335 (342)
.++|...+...
T Consensus 331 h~kAl~fae~h 341 (639)
T KOG1130|consen 331 HRKALYFAELH 341 (639)
T ss_pred HHHHHHHHHHH
Confidence 66777666544
No 63
>PLN02789 farnesyltranstransferase
Probab=99.30 E-value=2.2e-09 Score=96.38 Aligned_cols=203 Identities=9% Similarity=-0.091 Sum_probs=98.8
Q ss_pred CChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCH-
Q 019340 77 TLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKK- 153 (342)
Q Consensus 77 ~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~- 153 (342)
..+...+|.......++..++ +..+++..|.++..- ..++++++.++.++++. .+..++++.+.++...++.
T Consensus 49 ~~e~serAL~lt~~aI~lnP~--~ytaW~~R~~iL~~L---~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~ 123 (320)
T PLN02789 49 SDERSPRALDLTADVIRLNPG--NYTVWHFRRLCLEAL---DADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDA 123 (320)
T ss_pred cCCCCHHHHHHHHHHHHHCch--hHHHHHHHHHHHHHc---chhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchh
Confidence 344555555555555554433 445555555555441 12455556665555554 2445555555555544442
Q ss_pred -HHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcC---CCCCCCHHH
Q 019340 154 -EAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLALCLHRG---RGVDFNLQE 225 (342)
Q Consensus 154 -~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g---~~~~~~~~~ 225 (342)
++++.++.++++. .+..++.+.|.++. ..+++++++.++.++++. .+..+++..|.++... .+.....++
T Consensus 124 ~~~el~~~~kal~~dpkNy~AW~~R~w~l~--~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~ 201 (320)
T PLN02789 124 ANKELEFTRKILSLDAKNYHAWSHRQWVLR--TLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDS 201 (320)
T ss_pred hHHHHHHHHHHHHhCcccHHHHHHHHHHHH--HhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHH
Confidence 4555555555533 44555555555555 445555666666655553 3555555555554432 111122334
Q ss_pred HHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhh
Q 019340 226 AARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLF 286 (342)
Q Consensus 226 A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~ 286 (342)
.+.+..+++.. .+..+|++++.++...........+|...+..+... .+..++..|+.+|.
T Consensus 202 el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~ 266 (320)
T PLN02789 202 ELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLC 266 (320)
T ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHH
Confidence 55555555543 345555555555533110011333455555554442 33444555555554
No 64
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.28 E-value=2e-10 Score=91.31 Aligned_cols=118 Identities=12% Similarity=0.047 Sum_probs=84.7
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--
Q 019340 125 LDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA-- 200 (342)
Q Consensus 125 ~~~~~~A~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~-- 200 (342)
..+|+++++.+. ..++.+|.++...|++++|+.+|++++.. .++.+++++|.++. ..|++++|+.+|++++..
T Consensus 13 ~~~~~~al~~~p-~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~--~~g~~~~A~~~y~~Al~l~p 89 (144)
T PRK15359 13 EDILKQLLSVDP-ETVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWM--MLKEYTTAINFYGHALMLDA 89 (144)
T ss_pred HHHHHHHHHcCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH--HHhhHHHHHHHHHHHHhcCC
Confidence 356777777653 33666777777778888888888887755 66777778888777 777888888888887763
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHH
Q 019340 201 GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCY 249 (342)
Q Consensus 201 ~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y 249 (342)
+++.+++++|.++.. .+++++|+..|++|+.. +++..+.+.|.+.
T Consensus 90 ~~~~a~~~lg~~l~~----~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~ 136 (144)
T PRK15359 90 SHPEPVYQTGVCLKM----MGEPGLAREAFQTAIKMSYADASWSEIRQNAQ 136 (144)
T ss_pred CCcHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 577778888887776 56777777777777765 4566666666554
No 65
>PLN02789 farnesyltranstransferase
Probab=99.27 E-value=6.1e-09 Score=93.48 Aligned_cols=216 Identities=9% Similarity=-0.116 Sum_probs=169.3
Q ss_pred CCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCC-CHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccC--HHHHH
Q 019340 119 KNLDKALDSFLKGAARG--STLAMVDAGLMYWEMD-KKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPAN--AEEAV 191 (342)
Q Consensus 119 ~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~-~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~--~~~A~ 191 (342)
+..++|+..+.++++.+ +..++...|.++...+ ++++++.++.+++.. .+..++.+.+.++. ..++ .++++
T Consensus 51 e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~--~l~~~~~~~el 128 (320)
T PLN02789 51 ERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAE--KLGPDAANKEL 128 (320)
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHH--HcCchhhHHHH
Confidence 57889999999999974 7889999999999888 689999999999865 77889999998887 4444 37889
Q ss_pred HHHHHHHHc--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcC---CCCcccHHHHHH
Q 019340 192 KLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFG---EGLPLSHRQARK 264 (342)
Q Consensus 192 ~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g---~g~~~~~~~A~~ 264 (342)
.++.++++. .+..++...|.++.. .+++++++.++.++++. .+..+|+..+.+.... .+.....++++.
T Consensus 129 ~~~~kal~~dpkNy~AW~~R~w~l~~----l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~ 204 (320)
T PLN02789 129 EFTRKILSLDAKNYHAWSHRQWVLRT----LGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELK 204 (320)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHH----hhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHH
Confidence 999998875 489999999999987 66899999999999986 5888999999987543 233334578899
Q ss_pred HHHHHHHc--CCHHHHHHHHHHhhh----cCCHHHHHHHHHHHHHcC--cHHHHHHHHHHHhhcCh--------------
Q 019340 265 WMKRAADC--GHGKAQLEHGLGLFT----EGEMMKAVVYLELATRAG--ETAADHVKNVILQQLSA-------------- 322 (342)
Q Consensus 265 ~~~~a~~~--~~~~a~~~Lg~~~~~----~~~~~~A~~~~~~a~~~~--~~~a~~~~~~~~~~~~~-------------- 322 (342)
+..+++.. .+..+++.++.++.. .++..+|...+..++..+ ...|...+.-+......
T Consensus 205 y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~ 284 (320)
T PLN02789 205 YTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAE 284 (320)
T ss_pred HHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhcccc
Confidence 99999876 678899999999987 345677999999987764 44555555544443211
Q ss_pred --hcHHHHHHHHHhhhcCCC
Q 019340 323 --TSRDRAMLVVDSWRAMPS 340 (342)
Q Consensus 323 --~~~~~a~~~~~~~~~~~~ 340 (342)
...++|.+++..+.+-.|
T Consensus 285 ~~~~~~~a~~~~~~l~~~d~ 304 (320)
T PLN02789 285 ELSDSTLAQAVCSELEVADP 304 (320)
T ss_pred ccccHHHHHHHHHHHHhhCc
Confidence 134678888887755544
No 66
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.26 E-value=3.2e-09 Score=99.45 Aligned_cols=218 Identities=9% Similarity=-0.065 Sum_probs=143.2
Q ss_pred HHhhCCChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhc
Q 019340 72 IAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWE 149 (342)
Q Consensus 72 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~ 149 (342)
+......|++..+...+....+..++.+ .......+.++.. .+++++|...+++..+. +++.++..++.+|..
T Consensus 125 A~aa~~~g~~~~A~~~l~~a~~~~p~~~-l~~~~~~a~l~l~----~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~ 199 (409)
T TIGR00540 125 AEAAQQRGDEARANQHLEEAAELAGNDN-ILVEIARTRILLA----QNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIR 199 (409)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCcCc-hHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 3334455666666555554444332211 1122223555555 35666666666666654 356666666666666
Q ss_pred CCCHHHHHHHHHHHHhC--------------------------------------------CCHHHHHHHHHHHHcCCcc
Q 019340 150 MDKKEAAISLYRQAAVL--------------------------------------------GDPAGQFNLGISYLQAQPA 185 (342)
Q Consensus 150 ~~~~~~A~~~~~~a~~~--------------------------------------------~~~~a~~~Lg~~~~~g~~~ 185 (342)
.||+++|++.+.+..+. +++...+.++..+. ..+
T Consensus 200 ~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~--~~g 277 (409)
T TIGR00540 200 SGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLI--DCD 277 (409)
T ss_pred HhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHH--HCC
Confidence 66666666555544422 24556666666666 788
Q ss_pred CHHHHHHHHHHHHHcC--CHHHH--HHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCH--HHHHHHHHHHHcCCCCcc
Q 019340 186 NAEEAVKLLYQASIAG--HVRAQ--YQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYV--RAMYNTSLCYSFGEGLPL 257 (342)
Q Consensus 186 ~~~~A~~~~~~a~~~~--~~~a~--~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~--~~~--~a~~~lg~~y~~g~g~~~ 257 (342)
++++|+..++++++.. +.... ......... +.+.+++.+.++++.+. +++ .....+|+++.. .+
T Consensus 278 ~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~----~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~----~~ 349 (409)
T TIGR00540 278 DHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLK----PEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMK----HG 349 (409)
T ss_pred ChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcC----CCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHH----cc
Confidence 9999999999998853 33211 111112222 56788999999998876 677 677799999965 33
Q ss_pred cHHHHHHHHHH--HHHc-CCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHc
Q 019340 258 SHRQARKWMKR--AADC-GHGKAQLEHGLGLFTEGEMMKAVVYLELATRA 304 (342)
Q Consensus 258 ~~~~A~~~~~~--a~~~-~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~ 304 (342)
++++|.++|++ +.+. .++..+..||.++...|+.++|.++|++++..
T Consensus 350 ~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 350 EFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred cHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999995 5554 45666779999999999999999999998654
No 67
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.26 E-value=4.5e-10 Score=94.13 Aligned_cols=123 Identities=11% Similarity=0.045 Sum_probs=90.3
Q ss_pred ccCHHHHHHHHHHHHH--cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccH
Q 019340 184 PANAEEAVKLLYQASI--AGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSH 259 (342)
Q Consensus 184 ~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~ 259 (342)
.++.++++..++++++ ++++++|+.||.+|.. .+++++|+..|++|+.. +++..+.++|.++....| ...+
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~----~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g-~~~~ 126 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLW----RNDYDNALLAYRQALQLRGENAELYAALATVLYYQAG-QHMT 126 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC-CCCc
Confidence 4566677777777665 3577777777777766 56777777777777765 467777777775322222 1136
Q ss_pred HHHHHHHHHHHHc--CCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCcHHHHH
Q 019340 260 RQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADH 311 (342)
Q Consensus 260 ~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~ 311 (342)
++|...++++++. +++.++++||..+...|++++|+.+|+++++..+++...
T Consensus 127 ~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r 180 (198)
T PRK10370 127 PQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNR 180 (198)
T ss_pred HHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccH
Confidence 8999999999876 568899999999999999999999999999987765543
No 68
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.22 E-value=1.7e-09 Score=93.49 Aligned_cols=197 Identities=9% Similarity=-0.052 Sum_probs=135.2
Q ss_pred cccccccccCCCCCCCCCCcHHHHHHHHhhCCChhHHhhHHHHHHHHHHhCcCCC-HHHHHHHHHHHHcCCCCcCCHHHH
Q 019340 46 RFSCSRSIKSTEGHDFASLPFDVLNKIAASFTLPQLRAASLVCKSWNDALRPLRE-AMVLLRWGKRFKHGRGVRKNLDKA 124 (342)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-a~a~~~lg~~y~~g~g~~~~~~~A 124 (342)
+.+|++.............+...+..+...+..+++.+|...+....+..+..+. ..+++.+|.+|.. .+++++|
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~----~~~~~~A 89 (235)
T TIGR03302 14 LAGCSSKKKKEADPVEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYK----SGDYAEA 89 (235)
T ss_pred HhhccCCcccccCCcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHh----cCCHHHH
Confidence 4567666333222233344566777778888999999999988888887765433 3588999999999 5999999
Q ss_pred HHHHHHHHhCC--CH---HHHHHHHHHHhcC--------CCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHH
Q 019340 125 LDSFLKGAARG--ST---LAMVDAGLMYWEM--------DKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEE 189 (342)
Q Consensus 125 ~~~~~~A~~~~--~~---~a~~~lg~~~~~~--------~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~ 189 (342)
+..|+++++.. ++ .+++.+|.++... |++++|++.|++++.. ++..+...+..+.. . ..
T Consensus 90 ~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~--~----~~ 163 (235)
T TIGR03302 90 IAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDY--L----RN 163 (235)
T ss_pred HHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHH--H----HH
Confidence 99999999863 33 3789999999875 7899999999999865 34333222211111 0 00
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHcCCCCcccHHHHHH
Q 019340 190 AVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG-----YVRAMYNTSLCYSFGEGLPLSHRQARK 264 (342)
Q Consensus 190 A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~~-----~~~a~~~lg~~y~~g~g~~~~~~~A~~ 264 (342)
........+|.+|.. .+++.+|+..|+++++.. .+.+++.+|.+|.. .| ++++|..
T Consensus 164 -----------~~~~~~~~~a~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~-lg---~~~~A~~ 224 (235)
T TIGR03302 164 -----------RLAGKELYVARFYLK----RGAYVAAINRFETVVENYPDTPATEEALARLVEAYLK-LG---LKDLAQD 224 (235)
T ss_pred -----------HHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHH-cC---CHHHHHH
Confidence 011233467777766 567888888888887651 35778888888854 33 8888888
Q ss_pred HHHHHHH
Q 019340 265 WMKRAAD 271 (342)
Q Consensus 265 ~~~~a~~ 271 (342)
+++....
T Consensus 225 ~~~~l~~ 231 (235)
T TIGR03302 225 AAAVLGA 231 (235)
T ss_pred HHHHHHh
Confidence 7776554
No 69
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.22 E-value=7.7e-10 Score=87.96 Aligned_cols=108 Identities=13% Similarity=0.029 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHH
Q 019340 101 AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLG 176 (342)
Q Consensus 101 a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg 176 (342)
+..++.+|.++.. .+++++|+.+|++++.. .+..+++.+|.++...|++++|+.+|++++.. +++.+++++|
T Consensus 24 p~~~~~~g~~~~~----~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg 99 (144)
T PRK15359 24 PETVYASGYASWQ----EGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTG 99 (144)
T ss_pred HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHH
Confidence 3346677888887 68999999999999997 48899999999999999999999999999875 8899999999
Q ss_pred HHHHcCCccCHHHHHHHHHHHHH--cCCHHHHHHHHHHHh
Q 019340 177 ISYLQAQPANAEEAVKLLYQASI--AGHVRAQYQLALCLH 214 (342)
Q Consensus 177 ~~~~~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~ 214 (342)
.++. ..|++++|+..|++++. ++++..+.+.|.+..
T Consensus 100 ~~l~--~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 100 VCLK--MMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred HHHH--HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 9999 89999999999999987 468888888887764
No 70
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.20 E-value=2.2e-08 Score=100.24 Aligned_cols=248 Identities=13% Similarity=-0.049 Sum_probs=162.5
Q ss_pred hhCCChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHhcC
Q 019340 74 ASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG---STLAMVDAGLMYWEM 150 (342)
Q Consensus 74 ~~~~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~lg~~~~~~ 150 (342)
.....|++.+|..++...........+...+..+-..+.. .++.+.+...+......| +...+..|..+|...
T Consensus 96 ~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~----~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~ 171 (697)
T PLN03081 96 KLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIA----LKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKC 171 (697)
T ss_pred HHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcC
Confidence 3446788888887776554433333466666666666666 478899999999888765 667788888999999
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHcC---CHHHH---------------------
Q 019340 151 DKKEAAISLYRQAAVLGDPAGQFNLGISYLQAQPANAEEAVKLLYQASIAG---HVRAQ--------------------- 206 (342)
Q Consensus 151 ~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~--------------------- 206 (342)
|++++|.+.|++..+ .+...+..+...|. ..+++++|+..|++..+.+ +...+
T Consensus 172 g~~~~A~~lf~~m~~-~~~~t~n~li~~~~--~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~ 248 (697)
T PLN03081 172 GMLIDARRLFDEMPE-RNLASWGTIIGGLV--DAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHC 248 (697)
T ss_pred CCHHHHHHHHhcCCC-CCeeeHHHHHHHHH--HCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHH
Confidence 999999999988755 45667777888887 7789999999999887654 22222
Q ss_pred --------------HHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc
Q 019340 207 --------------YQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC 272 (342)
Q Consensus 207 --------------~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~ 272 (342)
..|-.+|.. .++.++|.+.|++.. ..+..+|..|...|.. .| +.++|+..|++....
T Consensus 249 ~~~~~g~~~d~~~~n~Li~~y~k----~g~~~~A~~vf~~m~-~~~~vt~n~li~~y~~-~g---~~~eA~~lf~~M~~~ 319 (697)
T PLN03081 249 CVLKTGVVGDTFVSCALIDMYSK----CGDIEDARCVFDGMP-EKTTVAWNSMLAGYAL-HG---YSEEALCLYYEMRDS 319 (697)
T ss_pred HHHHhCCCccceeHHHHHHHHHH----CCCHHHHHHHHHhCC-CCChhHHHHHHHHHHh-CC---CHHHHHHHHHHHHHc
Confidence 222233332 345666666665542 2345566666666643 22 666676666666544
Q ss_pred C---CHHHHHHHHHHhhhcCCHHHHHHHHHHHHHcC-cHHHHHHHHHHHhhcChhcHHHHHHHHHhhhc
Q 019340 273 G---HGKAQLEHGLGLFTEGEMMKAVVYLELATRAG-ETAADHVKNVILQQLSATSRDRAMLVVDSWRA 337 (342)
Q Consensus 273 ~---~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~-~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 337 (342)
+ +...+..+...+...|++++|...+....+.| .++......++..+...++.++|.++++++.+
T Consensus 320 g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~ 388 (697)
T PLN03081 320 GVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR 388 (697)
T ss_pred CCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC
Confidence 2 34555666666666667777777666666665 34444444555555556667777777666543
No 71
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.18 E-value=4.6e-09 Score=96.43 Aligned_cols=197 Identities=13% Similarity=0.002 Sum_probs=146.9
Q ss_pred cCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC-----CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCH
Q 019340 97 PLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR-----GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDP 169 (342)
Q Consensus 97 ~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~-----~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~ 169 (342)
++..+.++..+|.++... ++.+.+...+.++... +..+..+..+.++...|++++|+.+++++++. ++.
T Consensus 2 dp~~~~a~~~~a~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~ 77 (355)
T cd05804 2 DPDFALGHAAAALLLLLG----GERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDL 77 (355)
T ss_pred CCccHHHHHHHHHHHHhc----CCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH
Confidence 345789999999888873 6778878888887664 24566777888999999999999999999865 555
Q ss_pred HHHHHHHHHHHc-C-CccCHHHHHHHHHHHHH--cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHH
Q 019340 170 AGQFNLGISYLQ-A-QPANAEEAVKLLYQASI--AGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMY 243 (342)
Q Consensus 170 ~a~~~Lg~~~~~-g-~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~--~~~~a~~ 243 (342)
.++.. +..+.. | ..+....+...+..... ++...+...+|.++.. .+++++|+..++++++. .++.++.
T Consensus 78 ~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~----~G~~~~A~~~~~~al~~~p~~~~~~~ 152 (355)
T cd05804 78 LALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEE----AGQYDRAEEAARRALELNPDDAWAVH 152 (355)
T ss_pred HHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCcHHHH
Confidence 55553 434431 1 23444444444444211 2345667788889887 77899999999999987 4677889
Q ss_pred HHHHHHHcCCCCcccHHHHHHHHHHHHHcCC------HHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCc
Q 019340 244 NTSLCYSFGEGLPLSHRQARKWMKRAADCGH------GKAQLEHGLGLFTEGEMMKAVVYLELATRAGE 306 (342)
Q Consensus 244 ~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~------~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~ 306 (342)
.+|.+|.. .| ++++|+.++.++++..+ ...+..+|.++...|++++|+.+|++++...+
T Consensus 153 ~la~i~~~-~g---~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 153 AVAHVLEM-QG---RFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSA 217 (355)
T ss_pred HHHHHHHH-cC---CHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence 99999965 33 99999999999988532 23456899999999999999999999975543
No 72
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.18 E-value=4.6e-09 Score=105.16 Aligned_cols=244 Identities=10% Similarity=-0.036 Sum_probs=127.2
Q ss_pred CChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHhcCCCH
Q 019340 77 TLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG---STLAMVDAGLMYWEMDKK 153 (342)
Q Consensus 77 ~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~lg~~~~~~~~~ 153 (342)
..|+..+|..++... . .++..++..|...|.. .++.++|+.+|++..+.| +...+..+...+...|++
T Consensus 271 k~g~~~~A~~vf~~m----~-~~~~vt~n~li~~y~~----~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~ 341 (697)
T PLN03081 271 KCGDIEDARCVFDGM----P-EKTTVAWNSMLAGYAL----HGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALL 341 (697)
T ss_pred HCCCHHHHHHHHHhC----C-CCChhHHHHHHHHHHh----CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccch
Confidence 456666665444322 1 2355556666666666 366777777776665543 444555555555555666
Q ss_pred HHHHHHHHHHHhCC---CHHHHHHHHHHHHc-----------------------------CCccCHHHHHHHHHHHHHcC
Q 019340 154 EAAISLYRQAAVLG---DPAGQFNLGISYLQ-----------------------------AQPANAEEAVKLLYQASIAG 201 (342)
Q Consensus 154 ~~A~~~~~~a~~~~---~~~a~~~Lg~~~~~-----------------------------g~~~~~~~A~~~~~~a~~~~ 201 (342)
++|.+.+....+.+ +...+..|...|.. +..|+.++|++.|++..+.|
T Consensus 342 ~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g 421 (697)
T PLN03081 342 EHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEG 421 (697)
T ss_pred HHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 66666555555442 22333334444430 04445555555555544433
Q ss_pred ---CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCC
Q 019340 202 ---HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG-G---YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGH 274 (342)
Q Consensus 202 ---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~-~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~ 274 (342)
+...+..+-..+.. .++.++|.++|+...+. + +...+..+..+|.+ .++.++|.+.+++.....+
T Consensus 422 ~~Pd~~T~~~ll~a~~~----~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r----~G~~~eA~~~~~~~~~~p~ 493 (697)
T PLN03081 422 VAPNHVTFLAVLSACRY----SGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGR----EGLLDEAYAMIRRAPFKPT 493 (697)
T ss_pred CCCCHHHHHHHHHHHhc----CCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHh----cCCHHHHHHHHHHCCCCCC
Confidence 22333333333333 33455555555554432 1 22234444444432 1256666666555433344
Q ss_pred HHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCcHHHHHHHHHHHhhcChhcHHHHHHHHHhhhc
Q 019340 275 GKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRA 337 (342)
Q Consensus 275 ~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 337 (342)
...+..|...+...|+++.|...+++..+.++.+...+..++..+...+++++|.++.+..+.
T Consensus 494 ~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~ 556 (697)
T PLN03081 494 VNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKR 556 (697)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 455556666666666666666666666666655444444555555666777777777776654
No 73
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.15 E-value=1.3e-09 Score=91.29 Aligned_cols=116 Identities=16% Similarity=0.107 Sum_probs=83.8
Q ss_pred cCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHH-HcCCccCHHHHHH
Q 019340 118 RKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISY-LQAQPANAEEAVK 192 (342)
Q Consensus 118 ~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~-~~g~~~~~~~A~~ 192 (342)
.++.++++..+++++.. +++.+++.||.+|...|++++|+..|++++.. ++++.+..+|.++ .......+++|..
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 35677777788887775 47778888888888888888888888887754 6777888888764 4211122578888
Q ss_pred HHHHHHHc--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCC
Q 019340 193 LLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG 237 (342)
Q Consensus 193 ~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~~ 237 (342)
.++++++. +++.+++.||.++.. .+++++|+.+|+++++..
T Consensus 132 ~l~~al~~dP~~~~al~~LA~~~~~----~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 132 MIDKALALDANEVTALMLLASDAFM----QADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHH----cCCHHHHHHHHHHHHhhC
Confidence 88887664 477788888888776 667788888888777654
No 74
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.14 E-value=1.5e-08 Score=101.42 Aligned_cols=191 Identities=10% Similarity=-0.076 Sum_probs=151.1
Q ss_pred CCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCHHHHHH-
Q 019340 98 LREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQFN- 174 (342)
Q Consensus 98 ~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~- 174 (342)
...+...|..+++..+ .||++.|+..|+++++.. ++.+...+..++...|+.++|+.++++++...+......
T Consensus 31 p~~~~~~y~~aii~~r----~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~ll 106 (822)
T PRK14574 31 PAMADTQYDSLIIRAR----AGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLA 106 (822)
T ss_pred ccchhHHHHHHHHHHh----CCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHH
Confidence 3467888999999998 599999999999999875 433455888888889999999999999997655444444
Q ss_pred -HHHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHc
Q 019340 175 -LGISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSF 251 (342)
Q Consensus 175 -Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~y~~ 251 (342)
+|.+|. ..+++++|+..|+++++. +++.++..|+.+|.. .++.++|+..++++.........+ ++.+|..
T Consensus 107 alA~ly~--~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~----~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~ 179 (822)
T PRK14574 107 SAARAYR--NEKRWDQALALWQSSLKKDPTNPDLISGMIMTQAD----AGRGGVVLKQATELAERDPTVQNY-MTLSYLN 179 (822)
T ss_pred HHHHHHH--HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhh----cCCHHHHHHHHHHhcccCcchHHH-HHHHHHH
Confidence 477998 889999999999999875 588999888888877 678999999999998874433333 5555543
Q ss_pred CCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhhcCCHHHHHHHHHHH
Q 019340 252 GEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELA 301 (342)
Q Consensus 252 g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a 301 (342)
. + ..+..+|+..|+++++. ++.+.+..+..++...|-...|.+..+.-
T Consensus 180 ~-~-~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~ 229 (822)
T PRK14574 180 R-A-TDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKEN 229 (822)
T ss_pred H-h-cchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhC
Confidence 2 1 23666699999999987 55788888888888888888888776653
No 75
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=2.9e-08 Score=91.09 Aligned_cols=197 Identities=20% Similarity=0.207 Sum_probs=155.6
Q ss_pred HHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCC-CHH--------H
Q 019340 102 MVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG-STLAMVDAGLMYWEMDKKEAAISLYRQAAVLG-DPA--------G 171 (342)
Q Consensus 102 ~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~-~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~-~~~--------a 171 (342)
...-.||..... ++++..|+++|.+++++. +..-+.+.+-.|++.|.+.+.+....++++.| ... +
T Consensus 225 ~~ek~lgnaayk----kk~f~~a~q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~ 300 (539)
T KOG0548|consen 225 HKEKELGNAAYK----KKDFETAIQHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKA 300 (539)
T ss_pred hHHHHHHHHHHH----hhhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHH
Confidence 344557777766 589999999999999875 55566789999999999999999999988773 333 3
Q ss_pred HHHHHHHHHcCCccCHHHHHHHHHHHHHcC-------------------------C---HHHHHHHHHHHhcCCCCCCCH
Q 019340 172 QFNLGISYLQAQPANAEEAVKLLYQASIAG-------------------------H---VRAQYQLALCLHRGRGVDFNL 223 (342)
Q Consensus 172 ~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~~-------------------------~---~~a~~~lg~~~~~g~~~~~~~ 223 (342)
+..+|..|. ..++++.++.+|++++..- + ......-|..++. .+|+
T Consensus 301 ~~r~g~a~~--k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk----~gdy 374 (539)
T KOG0548|consen 301 LARLGNAYT--KREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFK----KGDY 374 (539)
T ss_pred HHHhhhhhh--hHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHh----ccCH
Confidence 333555666 6789999999999986521 1 1112334666665 7899
Q ss_pred HHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCC--HHHHHHHHHHhhhcCCHHHHHHHHH
Q 019340 224 QEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGH--GKAQLEHGLGLFTEGEMMKAVVYLE 299 (342)
Q Consensus 224 ~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~Lg~~~~~~~~~~~A~~~~~ 299 (342)
..|+.+|.+|+.. .++..+.|.+.||.. .| ++..|+...+.+++.++ ..+|..-|.++..+.+|++|...|.
T Consensus 375 ~~Av~~YteAIkr~P~Da~lYsNRAac~~k-L~---~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~ 450 (539)
T KOG0548|consen 375 PEAVKHYTEAIKRDPEDARLYSNRAACYLK-LG---EYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQ 450 (539)
T ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHH-Hh---hHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999987 578889999999965 33 99999999999998854 6788999999999999999999999
Q ss_pred HHHHcCcHHHHHH
Q 019340 300 LATRAGETAADHV 312 (342)
Q Consensus 300 ~a~~~~~~~a~~~ 312 (342)
.+++.++......
T Consensus 451 eale~dp~~~e~~ 463 (539)
T KOG0548|consen 451 EALELDPSNAEAI 463 (539)
T ss_pred HHHhcCchhHHHH
Confidence 9999987666543
No 76
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.08 E-value=9e-09 Score=101.16 Aligned_cols=148 Identities=12% Similarity=-0.028 Sum_probs=124.5
Q ss_pred hhHHhhHHHHHHHHHHhCcCC-CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHH
Q 019340 79 PQLRAASLVCKSWNDALRPLR-EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEA 155 (342)
Q Consensus 79 ~~~~~a~~~~~~~~~~~~~~~-~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~ 155 (342)
+..+.+...+........+.. ++.++++||.+..+ .+.+++|..+++.+++. ++..+..+++.++.+.+.+++
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~La~i~~~----~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~ee 138 (694)
T PRK15179 63 AAVHKPAAALPELLDYVRRYPHTELFQVLVARALEA----AHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEA 138 (694)
T ss_pred hhhcchHhhHHHHHHHHHhccccHHHHHHHHHHHHH----cCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHH
Confidence 333333333333333333333 58999999999999 58999999999999986 689999999999999999999
Q ss_pred HHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Q 019340 156 AISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYL 231 (342)
Q Consensus 156 A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~ 231 (342)
|+.++++++.. +++.+++.+|.++. ..|++++|+.+|++++.+ +++.++..+|.++.. .++.++|...|+
T Consensus 139 A~~~~~~~l~~~p~~~~~~~~~a~~l~--~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~----~G~~~~A~~~~~ 212 (694)
T PRK15179 139 GRAEIELYFSGGSSSAREILLEAKSWD--EIGQSEQADACFERLSRQHPEFENGYVGWAQSLTR----RGALWRARDVLQ 212 (694)
T ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHH--HhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH----cCCHHHHHHHHH
Confidence 99999999865 88999999999999 999999999999999965 478999999999987 778999999999
Q ss_pred HHHHC
Q 019340 232 RAAEG 236 (342)
Q Consensus 232 ~A~~~ 236 (342)
+|++.
T Consensus 213 ~a~~~ 217 (694)
T PRK15179 213 AGLDA 217 (694)
T ss_pred HHHHh
Confidence 99986
No 77
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=4.8e-08 Score=87.07 Aligned_cols=188 Identities=16% Similarity=0.104 Sum_probs=154.1
Q ss_pred cCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCccCHHHHHHH
Q 019340 118 RKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVLG--DPAGQFNLGISYLQAQPANAEEAVKL 193 (342)
Q Consensus 118 ~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~~~~g~~~~~~~A~~~ 193 (342)
.+++..|+.+-+++++.+ +..++..-|.++...++.++|+-.|+.|..+. .-+.+-.|-.+|. ..+.+.+|...
T Consensus 313 ~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYL--A~~~~kEA~~~ 390 (564)
T KOG1174|consen 313 EKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYL--AQKRFKEANAL 390 (564)
T ss_pred hhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHH--hhchHHHHHHH
Confidence 478888999999998874 78899999999999999999999999998775 4566777777788 88899999888
Q ss_pred HHHHHH--cCCHHHHHHHH-HHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHH
Q 019340 194 LYQASI--AGHVRAQYQLA-LCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKR 268 (342)
Q Consensus 194 ~~~a~~--~~~~~a~~~lg-~~~~~g~~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~ 268 (342)
-..++. +.++.+.-.+| .++.. .+.-.++|..++++++.+ ++..|-..++.++.. ++.++.++..+++
T Consensus 391 An~~~~~~~~sA~~LtL~g~~V~~~---dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~----Eg~~~D~i~LLe~ 463 (564)
T KOG1174|consen 391 ANWTIRLFQNSARSLTLFGTLVLFP---DPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQV----EGPTKDIIKLLEK 463 (564)
T ss_pred HHHHHHHhhcchhhhhhhcceeecc---CchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHh----hCccchHHHHHHH
Confidence 877766 35777777786 44432 155679999999999987 688899999988854 5589999999999
Q ss_pred HHHc-CCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCcHHHHHHHH
Q 019340 269 AADC-GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKN 314 (342)
Q Consensus 269 a~~~-~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~~~ 314 (342)
.+.. .+..-...||.++...+.+.+|+.+|..|++++|.+-....+
T Consensus 464 ~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~G 510 (564)
T KOG1174|consen 464 HLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRG 510 (564)
T ss_pred HHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHH
Confidence 9875 667778899999999999999999999999998776555443
No 78
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.06 E-value=6.9e-09 Score=98.21 Aligned_cols=214 Identities=16% Similarity=0.024 Sum_probs=164.5
Q ss_pred CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-CCCHHHHHHHHHH
Q 019340 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAV-LGDPAGQFNLGIS 178 (342)
Q Consensus 100 ~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~-~~~~~a~~~Lg~~ 178 (342)
.+...-.++.++.. .|=...|+..|++ ...+-.+..+|...|+..+|....++-++ ..++..+..||.+
T Consensus 397 ~Wq~q~~laell~s----lGitksAl~I~Er------lemw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 397 IWQLQRLLAELLLS----LGITKSALVIFER------LEMWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDV 466 (777)
T ss_pred cchHHHHHHHHHHH----cchHHHHHHHHHh------HHHHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhh
Confidence 44555666776666 3456678888877 56777888899999999999999999998 4778888888988
Q ss_pred HHcCCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCc
Q 019340 179 YLQAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLP 256 (342)
Q Consensus 179 ~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~ 256 (342)
.. ++.=+++|.++.... +..|+..+|..... .+++.++.++++.+++. .....|+.+|.++.. .
T Consensus 467 ~~--d~s~yEkawElsn~~----sarA~r~~~~~~~~----~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALq----l 532 (777)
T KOG1128|consen 467 LH--DPSLYEKAWELSNYI----SARAQRSLALLILS----NKDFSEADKHLERSLEINPLQLGTWFGLGCAALQ----L 532 (777)
T ss_pred cc--ChHHHHHHHHHhhhh----hHHHHHhhcccccc----chhHHHHHHHHHHHhhcCccchhHHHhccHHHHH----H
Confidence 77 544444444444332 45677888877665 67899999999999887 467889999999865 3
Q ss_pred ccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHcC--cHHHHHHHHHHHhhcChhcHHHHHHHH
Q 019340 257 LSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAG--ETAADHVKNVILQQLSATSRDRAMLVV 332 (342)
Q Consensus 257 ~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~~~~~~~~~~~~~~~~a~~~~ 332 (342)
.+...|..+|..++.. ++.++++||...|...++..+|...++.|+..+ +.....|+..+. ..-+++++|.+.+
T Consensus 533 ek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvs--vdvge~eda~~A~ 610 (777)
T KOG1128|consen 533 EKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVS--VDVGEFEDAIKAY 610 (777)
T ss_pred hhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhh--hhcccHHHHHHHH
Confidence 3899999999998764 789999999999999999999999999998875 555565554444 5558899999998
Q ss_pred HhhhcCC
Q 019340 333 DSWRAMP 339 (342)
Q Consensus 333 ~~~~~~~ 339 (342)
+++.+.+
T Consensus 611 ~rll~~~ 617 (777)
T KOG1128|consen 611 HRLLDLR 617 (777)
T ss_pred HHHHHhh
Confidence 8876543
No 79
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.04 E-value=1.7e-07 Score=88.07 Aligned_cols=252 Identities=17% Similarity=0.059 Sum_probs=139.5
Q ss_pred hhCCChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC-CCHHHHHHHHHHHhcCCC
Q 019340 74 ASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR-GSTLAMVDAGLMYWEMDK 152 (342)
Q Consensus 74 ~~~~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~-~~~~a~~~lg~~~~~~~~ 152 (342)
.....|+...|..+..+.++..+.. -..+ |+.+-.. +....++.|..+|.+|-.. |....++.-+.+....++
T Consensus 593 e~w~agdv~~ar~il~~af~~~pns--eeiw--laavKle--~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~ 666 (913)
T KOG0495|consen 593 EKWKAGDVPAARVILDQAFEANPNS--EEIW--LAAVKLE--FENDELERARDLLAKARSISGTERVWMKSANLERYLDN 666 (913)
T ss_pred HHHhcCCcHHHHHHHHHHHHhCCCc--HHHH--HHHHHHh--hccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhh
Confidence 3344566666666665555554431 1111 1211111 1235566666666666543 455555555556666666
Q ss_pred HHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHH--cCCHHHHHHHHHHHhcCCCCCCCHHHHHH
Q 019340 153 KEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASI--AGHVRAQYQLALCLHRGRGVDFNLQEAAR 228 (342)
Q Consensus 153 ~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~ 228 (342)
.++|+.+++.+++. ..+..+..+|.++. +.++.+.|...|...+. ++.+..|..|+.+-+. .++..+|..
T Consensus 667 ~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e--~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk----~~~~~rAR~ 740 (913)
T KOG0495|consen 667 VEEALRLLEEALKSFPDFHKLWLMLGQIEE--QMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEK----DGQLVRARS 740 (913)
T ss_pred HHHHHHHHHHHHHhCCchHHHHHHHhHHHH--HHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHH----hcchhhHHH
Confidence 66666666666655 45566666666666 56666666666666554 2455555555555443 335556666
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHc-CCCCcccHHHHHHHHHHHHH--------------------------------cCCH
Q 019340 229 WYLRAAEGGYVRAMYNTSLCYSF-GEGLPLSHRQARKWMKRAAD--------------------------------CGHG 275 (342)
Q Consensus 229 ~~~~A~~~~~~~a~~~lg~~y~~-g~g~~~~~~~A~~~~~~a~~--------------------------------~~~~ 275 (342)
.+.++.-.+.-.+...|..+-.. ..| +.++|...+.+|++ .+++
T Consensus 741 ildrarlkNPk~~~lwle~Ir~ElR~g---n~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dp 817 (913)
T KOG0495|consen 741 ILDRARLKNPKNALLWLESIRMELRAG---NKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDP 817 (913)
T ss_pred HHHHHHhcCCCcchhHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCc
Confidence 66665544333333333333211 122 55555555555544 1345
Q ss_pred HHHHHHHHHhhhcCCHHHHHHHHHHHHHcCc--HHHHHHHHHHHhhcChhcHHHHHHHHHhhhcCCCCC
Q 019340 276 KAQLEHGLGLFTEGEMMKAVVYLELATRAGE--TAADHVKNVILQQLSATSRDRAMLVVDSWRAMPSLH 342 (342)
Q Consensus 276 ~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~--~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 342 (342)
..+..+|.+++....+++|..||.+|+..++ .|+... ++.-.+..+..++-.++++.+-.-.|.|
T Consensus 818 hVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~--fykfel~hG~eed~kev~~~c~~~EP~h 884 (913)
T KOG0495|consen 818 HVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAW--FYKFELRHGTEEDQKEVLKKCETAEPTH 884 (913)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHH--HHHHHHHhCCHHHHHHHHHHHhccCCCC
Confidence 5678899999999999999999999998753 333322 1222222344444556666666555544
No 80
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.04 E-value=2.4e-07 Score=89.87 Aligned_cols=215 Identities=16% Similarity=0.080 Sum_probs=159.6
Q ss_pred cCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHH
Q 019340 118 RKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKL 193 (342)
Q Consensus 118 ~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~ 193 (342)
.||+++|...+...+.+. ++.+++.||.||...||.+++....-.|+.+ ++.+-|..++.... +.+++.+|.-|
T Consensus 152 rg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~--~~~~i~qA~~c 229 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSE--QLGNINQARYC 229 (895)
T ss_pred hCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHH--hcccHHHHHHH
Confidence 489999999999999975 8899999999999999999999999998754 88899999999999 89999999999
Q ss_pred HHHHHHcC--CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCC-HH------HHHHHHHHHHcCCCCcccHHHHHH
Q 019340 194 LYQASIAG--HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGY-VR------AMYNTSLCYSFGEGLPLSHRQARK 264 (342)
Q Consensus 194 ~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~~~-~~------a~~~lg~~y~~g~g~~~~~~~A~~ 264 (342)
|.+|++.. +-+..++-..+|.. .++...|...|.+.+.... .+ .-+..+..+.. ..+.+.|++
T Consensus 230 y~rAI~~~p~n~~~~~ers~L~~~----~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~----~~~~e~a~~ 301 (895)
T KOG2076|consen 230 YSRAIQANPSNWELIYERSSLYQK----TGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFIT----HNERERAAK 301 (895)
T ss_pred HHHHHhcCCcchHHHHHHHHHHHH----hChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHH----hhHHHHHHH
Confidence 99999865 55666777888876 6788999999988877543 11 11111111111 001233333
Q ss_pred HHHHHHHc------------------------------------------------------------------------
Q 019340 265 WMKRAADC------------------------------------------------------------------------ 272 (342)
Q Consensus 265 ~~~~a~~~------------------------------------------------------------------------ 272 (342)
.++.++..
T Consensus 302 ~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~ 381 (895)
T KOG2076|consen 302 ALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI 381 (895)
T ss_pred HHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH
Confidence 33222220
Q ss_pred ------------------------------CCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHc-CcHHHHHHHHHHHhhcC
Q 019340 273 ------------------------------GHGKAQLEHGLGLFTEGEMMKAVVYLELATRA-GETAADHVKNVILQQLS 321 (342)
Q Consensus 273 ------------------------------~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~-~~~~a~~~~~~~~~~~~ 321 (342)
.++.-++.++.+|.+.|++.+|+.+|...+.. +...+-..+.....++.
T Consensus 382 rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~ 461 (895)
T KOG2076|consen 382 RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYME 461 (895)
T ss_pred hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHH
Confidence 01223578888888899999999999999876 33444445555556677
Q ss_pred hhcHHHHHHHHHhhhcCCCCC
Q 019340 322 ATSRDRAMLVVDSWRAMPSLH 342 (342)
Q Consensus 322 ~~~~~~a~~~~~~~~~~~~~~ 342 (342)
.+..++|+..+..++...|.+
T Consensus 462 l~e~e~A~e~y~kvl~~~p~~ 482 (895)
T KOG2076|consen 462 LGEYEEAIEFYEKVLILAPDN 482 (895)
T ss_pred HhhHHHHHHHHHHHHhcCCCc
Confidence 799999999999999988864
No 81
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.01 E-value=7.9e-08 Score=88.28 Aligned_cols=199 Identities=16% Similarity=0.035 Sum_probs=144.6
Q ss_pred CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC-----CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--CCHHHH
Q 019340 134 RGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL-----GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA--GHVRAQ 206 (342)
Q Consensus 134 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-----~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~ 206 (342)
.+.+.++..+|.++...++.+.+...+.++... +..+..+..+.++. ..+++++|+.+++++++. ++..++
T Consensus 3 p~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~--~~g~~~~A~~~~~~~l~~~P~~~~a~ 80 (355)
T cd05804 3 PDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAW--IAGDLPKALALLEQLLDDYPRDLLAL 80 (355)
T ss_pred CccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHHCCCcHHHH
Confidence 356788999999999999999998888887744 34567777788888 788999999999998874 456555
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHH
Q 019340 207 YQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHG 282 (342)
Q Consensus 207 ~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg 282 (342)
.. +..+..-....+....+.+.+...... +...+...+|.++.. .| ++++|...++++++. +++.++..+|
T Consensus 81 ~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~-~G---~~~~A~~~~~~al~~~p~~~~~~~~la 155 (355)
T cd05804 81 KL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEE-AG---QYDRAEEAARRALELNPDDAWAVHAVA 155 (355)
T ss_pred HH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHH-cC---CHHHHHHHHHHHHhhCCCCcHHHHHHH
Confidence 53 433332111133445555555442222 345566778888854 33 999999999999986 5577889999
Q ss_pred HHhhhcCCHHHHHHHHHHHHHcCc--HH--HHHHHHHHHhhcChhcHHHHHHHHHhhhcCC
Q 019340 283 LGLFTEGEMMKAVVYLELATRAGE--TA--ADHVKNVILQQLSATSRDRAMLVVDSWRAMP 339 (342)
Q Consensus 283 ~~~~~~~~~~~A~~~~~~a~~~~~--~~--a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 339 (342)
.++...|++++|..+++++++..+ +. ..........++..++.++|.+.+++.....
T Consensus 156 ~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~ 216 (355)
T cd05804 156 HVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPS 216 (355)
T ss_pred HHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccc
Confidence 999999999999999999998753 22 2223344555677799999999998875443
No 82
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.97 E-value=4.6e-08 Score=86.90 Aligned_cols=197 Identities=19% Similarity=0.162 Sum_probs=125.3
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC----CC----HHHHHHHHHHHHcCCccCHHHH
Q 019340 119 KNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL----GD----PAGQFNLGISYLQAQPANAEEA 190 (342)
Q Consensus 119 ~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----~~----~~a~~~Lg~~~~~g~~~~~~~A 190 (342)
.|+++|...|.+|+ .+|...+++++|...|.++++. ++ ..++...+.+|. . .++.+|
T Consensus 29 ~~~e~Aa~~y~~Aa------------~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k--~-~~~~~A 93 (282)
T PF14938_consen 29 PDYEEAADLYEKAA------------NCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYK--K-GDPDEA 93 (282)
T ss_dssp HHHHHHHHHHHHHH------------HHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH--H-TTHHHH
T ss_pred CCHHHHHHHHHHHH------------HHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--h-hCHHHH
Confidence 47888888888744 4666777778888888777633 33 345556667766 2 288888
Q ss_pred HHHHHHHHH----cCC----HHHHHHHHHHHhcCCCCC-CCHHHHHHHHHHHHHC----CC----HHHHHHHHHHHHcCC
Q 019340 191 VKLLYQASI----AGH----VRAQYQLALCLHRGRGVD-FNLQEAARWYLRAAEG----GY----VRAMYNTSLCYSFGE 253 (342)
Q Consensus 191 ~~~~~~a~~----~~~----~~a~~~lg~~~~~g~~~~-~~~~~A~~~~~~A~~~----~~----~~a~~~lg~~y~~g~ 253 (342)
+.+|+++++ .|. +..+.++|.+|.. . +++++|+++|++|++. +. ......++.++.. .
T Consensus 94 i~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~----~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~-l 168 (282)
T PF14938_consen 94 IECYEKAIEIYREAGRFSQAAKCLKELAEIYEE----QLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYAR-L 168 (282)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCC----TT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHH-h
Confidence 888888876 343 4567788888876 4 6888899999888874 22 3455677888755 2
Q ss_pred CCcccHHHHHHHHHHHHHcC------C--H-HHHHHHHHHhhhcCCHHHHHHHHHHHHHcC-----cHHHHHHHH--HHH
Q 019340 254 GLPLSHRQARKWMKRAADCG------H--G-KAQLEHGLGLFTEGEMMKAVVYLELATRAG-----ETAADHVKN--VIL 317 (342)
Q Consensus 254 g~~~~~~~A~~~~~~a~~~~------~--~-~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~-----~~~a~~~~~--~~~ 317 (342)
+++++|+..|++.+..- . . ..++..+.+++..||...|...+++..... ..+...... ...
T Consensus 169 ---~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~ 245 (282)
T PF14938_consen 169 ---GRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAY 245 (282)
T ss_dssp ---T-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHH
T ss_pred ---CCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHH
Confidence 38999999999887631 1 1 234677888888999999999999887653 333333322 233
Q ss_pred hhcChhcHHHHHHHHHhhhcC
Q 019340 318 QQLSATSRDRAMLVVDSWRAM 338 (342)
Q Consensus 318 ~~~~~~~~~~a~~~~~~~~~~ 338 (342)
...+...+..+...+.++.++
T Consensus 246 ~~~D~e~f~~av~~~d~~~~l 266 (282)
T PF14938_consen 246 EEGDVEAFTEAVAEYDSISRL 266 (282)
T ss_dssp HTT-CCCHHHHCHHHTTSS--
T ss_pred HhCCHHHHHHHHHHHcccCcc
Confidence 333555566665555555443
No 83
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.97 E-value=1.2e-07 Score=93.32 Aligned_cols=128 Identities=9% Similarity=0.015 Sum_probs=101.9
Q ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHH--cCCHHHHHHHH
Q 019340 135 GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASI--AGHVRAQYQLA 210 (342)
Q Consensus 135 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg 210 (342)
.+++++++||.+....|++++|..+++.+++. ++..|..+++.++. ..+.+++|+.++++++. ++++.+++.+|
T Consensus 84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~--~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a 161 (694)
T PRK15179 84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVK--RQQGIEAGRAEIELYFSGGSSSAREILLEA 161 (694)
T ss_pred ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHH--HhccHHHHHHHHHHHhhcCCCCHHHHHHHH
Confidence 46788888888888888888888888888755 78888888888888 78888888888888766 46788888888
Q ss_pred HHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc
Q 019340 211 LCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC 272 (342)
Q Consensus 211 ~~~~~g~~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~ 272 (342)
.++.. .+.+++|+.+|++++.. +++.++.++|.++.. .| +.++|...|++|++.
T Consensus 162 ~~l~~----~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~-~G---~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 162 KSWDE----IGQSEQADACFERLSRQHPEFENGYVGWAQSLTR-RG---ALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHH----hcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH-cC---CHHHHHHHHHHHHHh
Confidence 88877 66788888888888754 457788888888743 33 788888888888776
No 84
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.95 E-value=1.4e-08 Score=80.03 Aligned_cols=94 Identities=20% Similarity=0.120 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHH
Q 019340 101 AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLG 176 (342)
Q Consensus 101 a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg 176 (342)
-+..|.+|..+.+ .|++++|..+|+..+..+ +...+++||.++...|++++|+..|.+|+.. ++|.+++++|
T Consensus 35 l~~lY~~A~~ly~----~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag 110 (157)
T PRK15363 35 LNTLYRYAMQLME----VKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAA 110 (157)
T ss_pred HHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHH
Confidence 3456666666666 367777777777776653 6667777777777777777777777776644 6777777777
Q ss_pred HHHHcCCccCHHHHHHHHHHHHHc
Q 019340 177 ISYLQAQPANAEEAVKLLYQASIA 200 (342)
Q Consensus 177 ~~~~~g~~~~~~~A~~~~~~a~~~ 200 (342)
.|++ ..|+.+.|.+.|+.++..
T Consensus 111 ~c~L--~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 111 ECYL--ACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHH--HcCCHHHHHHHHHHHHHH
Confidence 7777 677777777777777653
No 85
>PLN03077 Protein ECB2; Provisional
Probab=98.95 E-value=3.2e-07 Score=94.17 Aligned_cols=205 Identities=9% Similarity=-0.044 Sum_probs=125.6
Q ss_pred CCHHHHHHHHHHHHhCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCccCHHHHHHHHH
Q 019340 119 KNLDKALDSFLKGAARG---STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQFNLGISYLQAQPANAEEAVKLLY 195 (342)
Q Consensus 119 ~~~~~A~~~~~~A~~~~---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~ 195 (342)
++.+.|.+++....+.| +...+..|...|...|++++|.+.|++... .+...|..+...|. ..+++++|+..|+
T Consensus 302 g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~-~d~~s~n~li~~~~--~~g~~~~A~~lf~ 378 (857)
T PLN03077 302 GDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET-KDAVSWTAMISGYE--KNGLPDKALETYA 378 (857)
T ss_pred CChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC-CCeeeHHHHHHHHH--hCCCHHHHHHHHH
Confidence 34455555555554443 455566666677777777777777766432 34556666666666 6677777777777
Q ss_pred HHHHcC---CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHH
Q 019340 196 QASIAG---HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG---YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRA 269 (342)
Q Consensus 196 ~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a 269 (342)
+..+.+ +...+..+=..+.. .++.++|.+.+..+.+.| +...+..|..+|... ++.++|.+.|++.
T Consensus 379 ~M~~~g~~Pd~~t~~~ll~a~~~----~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~----g~~~~A~~vf~~m 450 (857)
T PLN03077 379 LMEQDNVSPDEITIASVLSACAC----LGDLDVGVKLHELAERKGLISYVVVANALIEMYSKC----KCIDKALEVFHNI 450 (857)
T ss_pred HHHHhCCCCCceeHHHHHHHHhc----cchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHc----CCHHHHHHHHHhC
Confidence 665543 22222222222322 456777777777777764 445666677777542 2788888888775
Q ss_pred HHcCCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCcHHHHHHHHHHHhhcChhcHHHHHHHHHhh
Q 019340 270 ADCGHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSW 335 (342)
Q Consensus 270 ~~~~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~ 335 (342)
.+ .+...+..+...|...|+.++|+..|++....-.++.......+......++.+.+.++...+
T Consensus 451 ~~-~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~ 515 (857)
T PLN03077 451 PE-KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHV 515 (857)
T ss_pred CC-CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHH
Confidence 43 345567777788888888888888888887654555555555555444445555555444433
No 86
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.95 E-value=2.3e-08 Score=78.44 Aligned_cols=104 Identities=14% Similarity=0.062 Sum_probs=56.1
Q ss_pred HHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--
Q 019340 127 SFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA-- 200 (342)
Q Consensus 127 ~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~-- 200 (342)
+|++++..+ +..+.+.+|..+...|++++|+.++++++.. .++.+++++|.++. ..+++.+|+.+|+++++.
T Consensus 5 ~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~--~~~~~~~A~~~~~~~~~~~p 82 (135)
T TIGR02552 5 TLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQ--MLKEYEEAIDAYALAAALDP 82 (135)
T ss_pred hHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhcCC
Confidence 344444442 4445555555555555666666555555442 44555555555555 455555555555555443
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC
Q 019340 201 GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG 236 (342)
Q Consensus 201 ~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~ 236 (342)
.++..++.+|.+|.. .+++++|+.+|+++++.
T Consensus 83 ~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 83 DDPRPYFHAAECLLA----LGEPESALKALDLAIEI 114 (135)
T ss_pred CChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHh
Confidence 245555555555554 44555555555555543
No 87
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.94 E-value=1.6e-08 Score=79.70 Aligned_cols=95 Identities=15% Similarity=0.042 Sum_probs=82.7
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHH--cCCHHHHHHHHH
Q 019340 136 STLAMVDAGLMYWEMDKKEAAISLYRQAAV--LGDPAGQFNLGISYLQAQPANAEEAVKLLYQASI--AGHVRAQYQLAL 211 (342)
Q Consensus 136 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~ 211 (342)
.-+..+.+|..+...|++++|+..|+-.+. ..++..+++||.++. ..+++++|+..|.+++. +++|++++++|.
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q--~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~ 111 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQ--AQKHWGEAIYAYGRAAQIKIDAPQAPWAAAE 111 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH--HHhhHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence 446678899999999999999999999864 478899999999999 89999999999999866 468999999999
Q ss_pred HHhcCCCCCCCHHHHHHHHHHHHHC
Q 019340 212 CLHRGRGVDFNLQEAARWYLRAAEG 236 (342)
Q Consensus 212 ~~~~g~~~~~~~~~A~~~~~~A~~~ 236 (342)
|+.. .++.+.|.+.|+.|+..
T Consensus 112 c~L~----lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 112 CYLA----CDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHH----cCCHHHHHHHHHHHHHH
Confidence 9988 67899999999988764
No 88
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.92 E-value=6.1e-08 Score=94.65 Aligned_cols=257 Identities=15% Similarity=0.055 Sum_probs=159.5
Q ss_pred CChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHH
Q 019340 77 TLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKE 154 (342)
Q Consensus 77 ~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~ 154 (342)
..++++.|...+-...++.+....-+.+..+|..|.. +++.-+|+.+|+.|+..+ +...+..||.+|.+.|++.
T Consensus 538 e~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLe----a~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~ 613 (1238)
T KOG1127|consen 538 EESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLE----AHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYS 613 (1238)
T ss_pred ccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccC----ccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCcee
Confidence 3455555555544444444333233444557777777 678888888888888764 7778888888888888888
Q ss_pred HHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc---------CCHHHHHH---------------
Q 019340 155 AAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA---------GHVRAQYQ--------------- 208 (342)
Q Consensus 155 ~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~---------~~~~a~~~--------------- 208 (342)
.|++.|.+|... .+.-+.|..+.+.- +.|.+.+|+..+...+.. |..+.+..
T Consensus 614 ~AlKvF~kAs~LrP~s~y~~fk~A~~ec--d~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kav 691 (1238)
T KOG1127|consen 614 HALKVFTKASLLRPLSKYGRFKEAVMEC--DNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAV 691 (1238)
T ss_pred hHHHhhhhhHhcCcHhHHHHHHHHHHHH--HhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhh
Confidence 888888887655 33344444444433 444444444444433221 11111111
Q ss_pred ---------------------------HHHHH----------------------hcCCCCCCCH---HHHHHHHHHHHHC
Q 019340 209 ---------------------------LALCL----------------------HRGRGVDFNL---QEAARWYLRAAEG 236 (342)
Q Consensus 209 ---------------------------lg~~~----------------------~~g~~~~~~~---~~A~~~~~~A~~~ 236 (342)
+|..+ ..+.+..++. --+.+++-..+..
T Consensus 692 d~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl 771 (1238)
T KOG1127|consen 692 DFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSL 771 (1238)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHH
Confidence 11110 0111111111 2233333333333
Q ss_pred -CCHHHHHHHHHHHHc-----CCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCcHH
Q 019340 237 -GYVRAMYNTSLCYSF-----GEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETA 308 (342)
Q Consensus 237 -~~~~a~~~lg~~y~~-----g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~~ 308 (342)
.++..|+|||.-|.+ +. ...+...|+.++++++.. ++..-+..||.+ ...|++.-|.++|-++.-..+..
T Consensus 772 ~~~~~~WyNLGinylr~f~~l~e-t~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~ 849 (1238)
T KOG1127|consen 772 AIHMYPWYNLGINYLRYFLLLGE-TMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTC 849 (1238)
T ss_pred hhccchHHHHhHHHHHHHHHcCC-cchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccc
Confidence 346678999887754 22 234556899999999876 556677888886 66689999999999998888777
Q ss_pred HHHHHHHHHhhcChhcHHHHHHHHHhhhcCCCC
Q 019340 309 ADHVKNVILQQLSATSRDRAMLVVDSWRAMPSL 341 (342)
Q Consensus 309 a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 341 (342)
...-.+.....+...+.+.|....+..+.+.|.
T Consensus 850 ~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~ 882 (1238)
T KOG1127|consen 850 HCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPL 882 (1238)
T ss_pred hhheeccceeEEecccHHHhhHHHHhhhhcCch
Confidence 777666677778888899998888888877764
No 89
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.91 E-value=1.2e-06 Score=76.65 Aligned_cols=232 Identities=17% Similarity=0.121 Sum_probs=179.2
Q ss_pred CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHH
Q 019340 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNL 175 (342)
Q Consensus 100 ~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~L 175 (342)
++.-++.||.-+.. .+++..|+..|..|++.+ +..+.+.-|..|+..|+..-|+.=+.+++++ +...|-..-
T Consensus 37 dvekhlElGk~lla----~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQR 112 (504)
T KOG0624|consen 37 DVEKHLELGKELLA----RGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQR 112 (504)
T ss_pred HHHHHHHHHHHHHH----hhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHh
Confidence 55678889988877 589999999999999964 6678899999999999999999999999877 667888889
Q ss_pred HHHHHcCCccCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHhcC--------CCCCCCHHHHHHHHHHHHHCCC--HH
Q 019340 176 GISYLQAQPANAEEAVKLLYQASIAG-----HVRAQYQLALCLHRG--------RGVDFNLQEAARWYLRAAEGGY--VR 240 (342)
Q Consensus 176 g~~~~~g~~~~~~~A~~~~~~a~~~~-----~~~a~~~lg~~~~~g--------~~~~~~~~~A~~~~~~A~~~~~--~~ 240 (342)
|.+++ ..|.++.|..-|.+.++.+ .-+++-.|+.+-..- ....+|..-++.+....++... +.
T Consensus 113 g~vll--K~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~ 190 (504)
T KOG0624|consen 113 GVVLL--KQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDAS 190 (504)
T ss_pred chhhh--hcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhH
Confidence 99999 8999999999999998853 345665555443321 0114588999999999998864 44
Q ss_pred HHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCcHHHH--------
Q 019340 241 AMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAAD-------- 310 (342)
Q Consensus 241 a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~-------- 310 (342)
-+...+.||.. .| ++.+|+.-++.+... ++.+.+|.+..+++..|+.+.++.-.+.-+.+++..-.
T Consensus 191 l~~~Rakc~i~-~~---e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKkl 266 (504)
T KOG0624|consen 191 LRQARAKCYIA-EG---EPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKL 266 (504)
T ss_pred HHHHHHHHHHh-cC---cHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHH
Confidence 45567788854 33 899999999999775 77899999999999999999999999999888765421
Q ss_pred ----HHHHHHHhhcChhcHHHHHHHHHhhhcCCCC
Q 019340 311 ----HVKNVILQQLSATSRDRAMLVVDSWRAMPSL 341 (342)
Q Consensus 311 ----~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 341 (342)
-.+..+........+.+..+..+.+++..|+
T Consensus 267 kKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~ 301 (504)
T KOG0624|consen 267 KKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPE 301 (504)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCc
Confidence 1122333444556666777777777666664
No 90
>PLN03077 Protein ECB2; Provisional
Probab=98.90 E-value=6.1e-07 Score=92.11 Aligned_cols=241 Identities=10% Similarity=-0.043 Sum_probs=160.6
Q ss_pred CChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC--CH-----------------
Q 019340 77 TLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--ST----------------- 137 (342)
Q Consensus 77 ~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~----------------- 137 (342)
..|+..+|..++.... . ++...+..+-..|.. .++.++|+.+|++....- +.
T Consensus 436 k~g~~~~A~~vf~~m~----~-~d~vs~~~mi~~~~~----~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~ 506 (857)
T PLN03077 436 KCKCIDKALEVFHNIP----E-KDVISWTSIIAGLRL----NNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALM 506 (857)
T ss_pred HcCCHHHHHHHHHhCC----C-CCeeeHHHHHHHHHH----CCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHH
Confidence 5567777765443321 1 234444444445544 367777777777765421 11
Q ss_pred ------------------HHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHH
Q 019340 138 ------------------LAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQFNLGISYLQAQPANAEEAVKLLYQASI 199 (342)
Q Consensus 138 ------------------~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~ 199 (342)
.....|-..|.+.|++++|...|... ..+...|..+...|. ..|+.++|+..|++..+
T Consensus 507 ~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~--~~G~~~~A~~lf~~M~~ 582 (857)
T PLN03077 507 CGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYV--AHGKGSMAVELFNRMVE 582 (857)
T ss_pred HhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHHH--HcCCHHHHHHHHHHHHH
Confidence 12223446777788888888888876 567777888877777 78888999999988777
Q ss_pred cC---CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH-CC---CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc
Q 019340 200 AG---HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAE-GG---YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC 272 (342)
Q Consensus 200 ~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~-~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~ 272 (342)
.| +...+..+-..|.. .++.++|.++|+...+ .+ +...+..+..+|.+. | +.++|.+++++..-.
T Consensus 583 ~g~~Pd~~T~~~ll~a~~~----~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~-G---~~~eA~~~~~~m~~~ 654 (857)
T PLN03077 583 SGVNPDEVTFISLLCACSR----SGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRA-G---KLTEAYNFINKMPIT 654 (857)
T ss_pred cCCCCCcccHHHHHHHHhh----cChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhC-C---CHHHHHHHHHHCCCC
Confidence 54 33344444344444 4578889999988873 33 445666777777552 2 889999888876434
Q ss_pred CCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCcHHHHHHHHHHHhhcChhcHHHHHHHHHhhhcC
Q 019340 273 GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRAM 338 (342)
Q Consensus 273 ~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 338 (342)
.+...|..|-..+...++.+.+....++.+++.+.+...+..+...+...++++++.++.+..+..
T Consensus 655 pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~ 720 (857)
T PLN03077 655 PDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMREN 720 (857)
T ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHc
Confidence 556667666667777888888888888888887776666555555556678888888888877543
No 91
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.90 E-value=1.8e-07 Score=93.20 Aligned_cols=205 Identities=10% Similarity=-0.032 Sum_probs=117.6
Q ss_pred CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHH-----------------H
Q 019340 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISL-----------------Y 160 (342)
Q Consensus 100 ~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~-----------------~ 160 (342)
+..++..|...|.. .+++++|+...+.+++. +....++.+|.++...+++.++.-. |
T Consensus 30 n~~a~~~Li~~~~~----~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv~~l~~~~~~~~~~~ve~~ 105 (906)
T PRK14720 30 KFKELDDLIDAYKS----ENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLLNLIDSFSQNLKWAIVEHI 105 (906)
T ss_pred hHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhhhhhhhcccccchhHHHHH
Confidence 44555666666644 25666666666655554 3455566666666555444433333 2
Q ss_pred HH-HHhC-CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC
Q 019340 161 RQ-AAVL-GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG 236 (342)
Q Consensus 161 ~~-a~~~-~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~ 236 (342)
.+ ..+. .+..|++.||.||. ..++.++++..|+++++. .++.+.+++|..|.. . |.++|+.++.+|+..
T Consensus 106 ~~~i~~~~~~k~Al~~LA~~Yd--k~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae----~-dL~KA~~m~~KAV~~ 178 (906)
T PRK14720 106 CDKILLYGENKLALRTLAEAYA--KLNENKKLKGVWERLVKADRDNPEIVKKLATSYEE----E-DKEKAITYLKKAIYR 178 (906)
T ss_pred HHHHHhhhhhhHHHHHHHHHHH--HcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHH----h-hHHHHHHHHHHHHHH
Confidence 22 2222 34468888888888 788888888888888774 578888888888876 4 888888888888753
Q ss_pred C-----CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc-CC---HHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCcH
Q 019340 237 G-----YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC-GH---GKAQLEHGLGLFTEGEMMKAVVYLELATRAGET 307 (342)
Q Consensus 237 ~-----~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~-~~---~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~ 307 (342)
- +....-....++.. .+.+.+.=.+..++.... +. ...+.-|=..|...+++++++.+++++++..+.
T Consensus 179 ~i~~kq~~~~~e~W~k~~~~---~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~ 255 (906)
T PRK14720 179 FIKKKQYVGIEEIWSKLVHY---NSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK 255 (906)
T ss_pred HHhhhcchHHHHHHHHHHhc---CcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc
Confidence 1 11111111111111 011333333333333222 11 222334445566677888888888888888765
Q ss_pred HHHHHHHHHHh
Q 019340 308 AADHVKNVILQ 318 (342)
Q Consensus 308 ~a~~~~~~~~~ 318 (342)
+......++..
T Consensus 256 n~~a~~~l~~~ 266 (906)
T PRK14720 256 NNKAREELIRF 266 (906)
T ss_pred chhhHHHHHHH
Confidence 55444444433
No 92
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.90 E-value=3.4e-08 Score=77.47 Aligned_cols=96 Identities=23% Similarity=0.162 Sum_probs=87.5
Q ss_pred CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHH
Q 019340 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNL 175 (342)
Q Consensus 100 ~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~L 175 (342)
++.+.+.+|.++.. .+++++|+.+|++++.. .++.+++.+|.++...|++++|+.+|++++.. .++..++++
T Consensus 16 ~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 91 (135)
T TIGR02552 16 QLEQIYALAYNLYQ----QGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHA 91 (135)
T ss_pred hHHHHHHHHHHHHH----cccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 67888999999998 58999999999999886 47899999999999999999999999999865 678999999
Q ss_pred HHHHHcCCccCHHHHHHHHHHHHHcC
Q 019340 176 GISYLQAQPANAEEAVKLLYQASIAG 201 (342)
Q Consensus 176 g~~~~~g~~~~~~~A~~~~~~a~~~~ 201 (342)
|.+|. ..+++++|+.+|+++++..
T Consensus 92 a~~~~--~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 92 AECLL--ALGEPESALKALDLAIEIC 115 (135)
T ss_pred HHHHH--HcCCHHHHHHHHHHHHHhc
Confidence 99999 8899999999999998764
No 93
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=2.1e-07 Score=83.01 Aligned_cols=250 Identities=12% Similarity=-0.008 Sum_probs=176.9
Q ss_pred hhCCChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCC
Q 019340 74 ASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMD 151 (342)
Q Consensus 74 ~~~~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~ 151 (342)
..|...++..|...+-..++..++ ++..+..-+.++.. .+++++|.-..++.+.. +....+..++.++...+
T Consensus 58 ~~yk~k~Y~nal~~yt~Ai~~~pd--~a~yy~nRAa~~m~----~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~ 131 (486)
T KOG0550|consen 58 AFYKQKTYGNALKNYTFAIDMCPD--NASYYSNRAATLMM----LGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALS 131 (486)
T ss_pred hHHHHhhHHHHHHHHHHHHHhCcc--chhhhchhHHHHHH----HHhHhhcccchhhheecCCCccccccchhhhhhhhH
Confidence 356667777887777777777666 57777777777766 47888999888888876 56677888888888888
Q ss_pred CHHHHHHHHHHHH---------------hCCC-----HHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHH
Q 019340 152 KKEAAISLYRQAA---------------VLGD-----PAGQFNLGISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQL 209 (342)
Q Consensus 152 ~~~~A~~~~~~a~---------------~~~~-----~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~l 209 (342)
+..+|.+.|+... .... ..+...-+.|+. ..+++.+|+..-...+++ .+.++.+.-
T Consensus 132 ~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~--~~~~~~~a~~ea~~ilkld~~n~~al~vr 209 (486)
T KOG0550|consen 132 DLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLA--FLGDYDEAQSEAIDILKLDATNAEALYVR 209 (486)
T ss_pred HHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhh--hcccchhHHHHHHHHHhcccchhHHHHhc
Confidence 8888887766321 0001 123333445555 567777777766666655 477888888
Q ss_pred HHHHhcCCCCCCCHHHHHHHHHHHHHCCCH--------------HHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCC-
Q 019340 210 ALCLHRGRGVDFNLQEAARWYLRAAEGGYV--------------RAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGH- 274 (342)
Q Consensus 210 g~~~~~g~~~~~~~~~A~~~~~~A~~~~~~--------------~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~- 274 (342)
|.|++. ..+.++|+..|++++..+.. ..+-.-|.-... .| ++.+|.++|..|+..++
T Consensus 210 g~~~yy----~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk-~G---~y~~A~E~Yteal~idP~ 281 (486)
T KOG0550|consen 210 GLCLYY----NDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFK-NG---NYRKAYECYTEALNIDPS 281 (486)
T ss_pred cccccc----ccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhh-cc---chhHHHHHHHHhhcCCcc
Confidence 888877 67889999999999876521 122223333322 23 88899999999987633
Q ss_pred -----HHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCcHHHHHHHHHHHhhcChhcHHHHHHHHHhhhcCC
Q 019340 275 -----GKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRAMP 339 (342)
Q Consensus 275 -----~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 339 (342)
+..+.+.+.+....|+..+|+.--..|+.+++.-...++.....++..+++++|.+-++...+..
T Consensus 282 n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 282 NKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred ccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44567888888889999999999999988887777777777777777788888887777665543
No 94
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.86 E-value=3.1e-07 Score=77.57 Aligned_cols=170 Identities=15% Similarity=0.072 Sum_probs=136.8
Q ss_pred HHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHH
Q 019340 124 ALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASI 199 (342)
Q Consensus 124 A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~ 199 (342)
+...+-+.... ++.++ .++...+...|+-+.+..+..+++.. .+.+....+|.... ..+++..|+..+++++.
T Consensus 52 a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~--~~g~~~~A~~~~rkA~~ 128 (257)
T COG5010 52 AAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQI--RNGNFGEAVSVLRKAAR 128 (257)
T ss_pred HHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHH--HhcchHHHHHHHHHHhc
Confidence 44444444443 46777 88889998899999999988887655 45556666888887 88999999999999887
Q ss_pred c--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--C
Q 019340 200 A--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--G 273 (342)
Q Consensus 200 ~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~ 273 (342)
. .+.+++..+|.+|.+ .++.+.|..-|.+|++. +.+....|||.+|.- ..|++.|..++..+... .
T Consensus 129 l~p~d~~~~~~lgaaldq----~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L----~gd~~~A~~lll~a~l~~~a 200 (257)
T COG5010 129 LAPTDWEAWNLLGAALDQ----LGRFDEARRAYRQALELAPNEPSIANNLGMSLLL----RGDLEDAETLLLPAYLSPAA 200 (257)
T ss_pred cCCCChhhhhHHHHHHHH----ccChhHHHHHHHHHHHhccCCchhhhhHHHHHHH----cCCHHHHHHHHHHHHhCCCC
Confidence 5 589999999999998 77899999999999886 688899999999864 33999999999999776 4
Q ss_pred CHHHHHHHHHHhhhcCCHHHHHHHHHHHHHc
Q 019340 274 HGKAQLEHGLGLFTEGEMMKAVVYLELATRA 304 (342)
Q Consensus 274 ~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~ 304 (342)
+.....||+.+....|++.+|...-..-+..
T Consensus 201 d~~v~~NLAl~~~~~g~~~~A~~i~~~e~~~ 231 (257)
T COG5010 201 DSRVRQNLALVVGLQGDFREAEDIAVQELLS 231 (257)
T ss_pred chHHHHHHHHHHhhcCChHHHHhhccccccc
Confidence 6777789999999999999998776654443
No 95
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.83 E-value=1.9e-06 Score=82.50 Aligned_cols=225 Identities=17% Similarity=0.074 Sum_probs=135.1
Q ss_pred CCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC---CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC-CC-----
Q 019340 98 LREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR---GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL-GD----- 168 (342)
Q Consensus 98 ~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~---~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-~~----- 168 (342)
..|+.+.|.|+.-|.. .++.+.|.++.+++++. .++.++..|+.++...+++.+|+.....+++. ++
T Consensus 475 ~~dp~~if~lalq~A~----~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~ 550 (799)
T KOG4162|consen 475 PTDPLVIFYLALQYAE----QRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLM 550 (799)
T ss_pred CCCchHHHHHHHHHHH----HHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhc
Confidence 3478899999999988 58999999999999997 38899999999999999999999998888753 22
Q ss_pred ------------HHHHH-----HHH-------------HHHH---c-C---CccCHHHHHHHHHHHHH------------
Q 019340 169 ------------PAGQF-----NLG-------------ISYL---Q-A---QPANAEEAVKLLYQASI------------ 199 (342)
Q Consensus 169 ------------~~a~~-----~Lg-------------~~~~---~-g---~~~~~~~A~~~~~~a~~------------ 199 (342)
++... .|+ ..-. . | ...+..+|++.++++..
T Consensus 551 ~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se 630 (799)
T KOG4162|consen 551 DGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSE 630 (799)
T ss_pred hhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccc
Confidence 11100 000 0000 0 0 12344445554444321
Q ss_pred ---------cCC-------HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCcccHHH
Q 019340 200 ---------AGH-------VRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG--YVRAMYNTSLCYSFGEGLPLSHRQ 261 (342)
Q Consensus 200 ---------~~~-------~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~y~~g~g~~~~~~~ 261 (342)
++. -.-+...+..+.. .++.+++..++.+|.... .+..|+..|.++.. .....+
T Consensus 631 ~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~----~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~----~~~~~E 702 (799)
T KOG4162|consen 631 LKLPSSTVLPGPDSLWYLLQKLWLLAADLFLL----SGNDDEARSCLLEASKIDPLSASVYYLRGLLLEV----KGQLEE 702 (799)
T ss_pred cccCcccccCCCCchHHHHHHHHHHHHHHHHh----cCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHH----HHhhHH
Confidence 010 0123344444444 335556666666655442 44556666666643 226666
Q ss_pred HHHHHHHHHHc--CCHHHHHHHHHHhhhcCCHHHHHH--HHHHHHHcC--cHHHHHHHHHHHhhcChhcHHHHHHHHHhh
Q 019340 262 ARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVV--YLELATRAG--ETAADHVKNVILQQLSATSRDRAMLVVDSW 335 (342)
Q Consensus 262 A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~--~~~~a~~~~--~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~ 335 (342)
|...|..|+.. +|+.+...||.++...|+..-|.+ .++-|++.+ +++++++++.+...+ |+.++|.+.++-.
T Consensus 703 A~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~--Gd~~~Aaecf~aa 780 (799)
T KOG4162|consen 703 AKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKL--GDSKQAAECFQAA 780 (799)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc--cchHHHHHHHHHH
Confidence 66666666543 556666666666666666655555 666666664 456666666655444 5555555555444
Q ss_pred h
Q 019340 336 R 336 (342)
Q Consensus 336 ~ 336 (342)
.
T Consensus 781 ~ 781 (799)
T KOG4162|consen 781 L 781 (799)
T ss_pred H
Confidence 3
No 96
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.83 E-value=1.3e-05 Score=70.36 Aligned_cols=259 Identities=11% Similarity=0.006 Sum_probs=174.2
Q ss_pred HHHHHhhCCChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHH
Q 019340 69 LNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLM 146 (342)
Q Consensus 69 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~ 146 (342)
++....++..+++..|...+-...+.-+ .+..+.|.-|.+|.. .|.-+-|+.-+.+.+++ +...+...-|.+
T Consensus 42 lElGk~lla~~Q~sDALt~yHaAve~dp--~~Y~aifrRaT~yLA----mGksk~al~Dl~rVlelKpDF~~ARiQRg~v 115 (504)
T KOG0624|consen 42 LELGKELLARGQLSDALTHYHAAVEGDP--NNYQAIFRRATVYLA----MGKSKAALQDLSRVLELKPDFMAARIQRGVV 115 (504)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcCCc--hhHHHHHHHHHHHhh----hcCCccchhhHHHHHhcCccHHHHHHHhchh
Confidence 4555567778888888765544444332 366788888888887 45666788888888876 456677888888
Q ss_pred HhcCCCHHHHHHHHHHHHhCCC-----HHHHHHHHHHHH----------cCCccCHHHHHHHHHHHHHc--CCHHHHHHH
Q 019340 147 YWEMDKKEAAISLYRQAAVLGD-----PAGQFNLGISYL----------QAQPANAEEAVKLLYQASIA--GHVRAQYQL 209 (342)
Q Consensus 147 ~~~~~~~~~A~~~~~~a~~~~~-----~~a~~~Lg~~~~----------~g~~~~~~~A~~~~~~a~~~--~~~~a~~~l 209 (342)
++..|.+++|+.=|+++++.+. -+++-.|+.+-. ....||...++.+..+.++- -++..+-.-
T Consensus 116 llK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~R 195 (504)
T KOG0624|consen 116 LLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQAR 195 (504)
T ss_pred hhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHH
Confidence 8888999999998888886532 344444443311 11357788888888877764 355555566
Q ss_pred HHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc---------------
Q 019340 210 ALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--------------- 272 (342)
Q Consensus 210 g~~~~~g~~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--------------- 272 (342)
+.||.. .++..+|+.-++.+..+ ++.+++|.++.++. ..| |.+.++.-.+.++..
T Consensus 196 akc~i~----~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y-~vg---d~~~sL~~iRECLKldpdHK~Cf~~YKklk 267 (504)
T KOG0624|consen 196 AKCYIA----EGEPKKAIHDLKQASKLSQDNTEGHYKISQLLY-TVG---DAENSLKEIRECLKLDPDHKLCFPFYKKLK 267 (504)
T ss_pred HHHHHh----cCcHHHHHHHHHHHHhccccchHHHHHHHHHHH-hhh---hHHHHHHHHHHHHccCcchhhHHHHHHHHH
Confidence 777776 56778888888777665 56777777777763 233 444444444443332
Q ss_pred ---------------CCHHHH----------------------HHHHHHhhhcCCHHHHHHHHHHHHHcCcHHHHHHHHH
Q 019340 273 ---------------GHGKAQ----------------------LEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNV 315 (342)
Q Consensus 273 ---------------~~~~a~----------------------~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~~~~ 315 (342)
++...+ --+..++...+++.+|+.-...+++..+.++..+...
T Consensus 268 Kv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dR 347 (504)
T KOG0624|consen 268 KVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDR 347 (504)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHH
Confidence 111111 1233344446788899999999999998888888888
Q ss_pred HHhhcChhcHHHHHHHHHhhhcCCCC
Q 019340 316 ILQQLSATSRDRAMLVVDSWRAMPSL 341 (342)
Q Consensus 316 ~~~~~~~~~~~~a~~~~~~~~~~~~~ 341 (342)
...++-..+++.|++-++.....+++
T Consensus 348 AeA~l~dE~YD~AI~dye~A~e~n~s 373 (504)
T KOG0624|consen 348 AEAYLGDEMYDDAIHDYEKALELNES 373 (504)
T ss_pred HHHHhhhHHHHHHHHHHHHHHhcCcc
Confidence 88888888888888877776665554
No 97
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.83 E-value=7.9e-07 Score=75.13 Aligned_cols=174 Identities=20% Similarity=0.086 Sum_probs=132.3
Q ss_pred hhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHH
Q 019340 79 PQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAA 156 (342)
Q Consensus 79 ~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A 156 (342)
.+...+..-..+.... ..++..+ +.+...+.. .++-+.+.....+++... +...+..+|......|++..|
T Consensus 47 ~q~~~a~~al~~~~~~--~p~d~~i-~~~a~a~~~----~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A 119 (257)
T COG5010 47 RQTQGAAAALGAAVLR--NPEDLSI-AKLATALYL----RGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEA 119 (257)
T ss_pred HhhhHHHHHHHHHHhc--CcchHHH-HHHHHHHHh----cccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHH
Confidence 3444444333333322 3335556 666666655 467777777777766543 555666699999999999999
Q ss_pred HHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHH
Q 019340 157 ISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLR 232 (342)
Q Consensus 157 ~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~ 232 (342)
+..+++++.. .|.+++..+|.+|. ..|+++.|..-|.++++. +.+.+..|||..|.. .+|++.|..++.+
T Consensus 120 ~~~~rkA~~l~p~d~~~~~~lgaald--q~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L----~gd~~~A~~lll~ 193 (257)
T COG5010 120 VSVLRKAARLAPTDWEAWNLLGAALD--QLGRFDEARRAYRQALELAPNEPSIANNLGMSLLL----RGDLEDAETLLLP 193 (257)
T ss_pred HHHHHHHhccCCCChhhhhHHHHHHH--HccChhHHHHHHHHHHHhccCCchhhhhHHHHHHH----cCCHHHHHHHHHH
Confidence 9999999866 88999999999999 899999999999999874 689999999999986 7899999999999
Q ss_pred HHHCC--CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHH
Q 019340 233 AAEGG--YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRA 269 (342)
Q Consensus 233 A~~~~--~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a 269 (342)
+.... +...-.||+.+. ...| ++.+|...-..=
T Consensus 194 a~l~~~ad~~v~~NLAl~~-~~~g---~~~~A~~i~~~e 228 (257)
T COG5010 194 AYLSPAADSRVRQNLALVV-GLQG---DFREAEDIAVQE 228 (257)
T ss_pred HHhCCCCchHHHHHHHHHH-hhcC---ChHHHHhhcccc
Confidence 98773 677788888887 3344 888887765443
No 98
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.81 E-value=4.1e-07 Score=90.71 Aligned_cols=184 Identities=9% Similarity=0.024 Sum_probs=137.1
Q ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHH-----------------HHHHHHH
Q 019340 135 GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAE-----------------EAVKLLY 195 (342)
Q Consensus 135 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~-----------------~A~~~~~ 195 (342)
++..++..|..+|...+++++|+..++.+++. +....++.+|.++.. .+++. .++.+|.
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q--~~~~~~~~lv~~l~~~~~~~~~~~ve~~~ 106 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLS--RRPLNDSNLLNLIDSFSQNLKWAIVEHIC 106 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHh--hcchhhhhhhhhhhhcccccchhHHHHHH
Confidence 47789999999999999999999999988765 778999999998883 33333 3333333
Q ss_pred H-HHHc-CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH
Q 019340 196 Q-ASIA-GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAAD 271 (342)
Q Consensus 196 ~-a~~~-~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~ 271 (342)
. ..+- ++..|++.||.||.. .++.++|...|+++++. .++.++.++|..|.. . |.++|+.++++|+.
T Consensus 107 ~~i~~~~~~k~Al~~LA~~Ydk----~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae----~-dL~KA~~m~~KAV~ 177 (906)
T PRK14720 107 DKILLYGENKLALRTLAEAYAK----LNENKKLKGVWERLVKADRDNPEIVKKLATSYEE----E-DKEKAITYLKKAIY 177 (906)
T ss_pred HHHHhhhhhhHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHH----h-hHHHHHHHHHHHHH
Confidence 3 2222 345799999999988 77899999999999987 588999999999975 3 99999999999987
Q ss_pred cCCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCcHHHHH--------------------HHHHHHhhcChhcHHHHHHH
Q 019340 272 CGHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADH--------------------VKNVILQQLSATSRDRAMLV 331 (342)
Q Consensus 272 ~~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~--------------------~~~~~~~~~~~~~~~~a~~~ 331 (342)
. |...+++.++.+++++.++..+.+... ...+...+....+++++..+
T Consensus 178 ~------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~i 245 (906)
T PRK14720 178 R------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYI 245 (906)
T ss_pred H------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHH
Confidence 5 444556666666666666555443332 22233444566778888888
Q ss_pred HHhhhcCCCC
Q 019340 332 VDSWRAMPSL 341 (342)
Q Consensus 332 ~~~~~~~~~~ 341 (342)
++.+++..|.
T Consensus 246 LK~iL~~~~~ 255 (906)
T PRK14720 246 LKKILEHDNK 255 (906)
T ss_pred HHHHHhcCCc
Confidence 8888877654
No 99
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.81 E-value=1.3e-06 Score=79.85 Aligned_cols=145 Identities=21% Similarity=0.131 Sum_probs=115.9
Q ss_pred CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHH
Q 019340 99 REAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFN 174 (342)
Q Consensus 99 ~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~ 174 (342)
+...++|..+..+.. .+++++|...+...+.. +|+..+-..+.++.+.++.++|++.+++++.+ +.+-...+
T Consensus 304 ~~~aa~YG~A~~~~~----~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~ 379 (484)
T COG4783 304 GGLAAQYGRALQTYL----AGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLN 379 (484)
T ss_pred cchHHHHHHHHHHHH----hcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHH
Confidence 567888988888888 58899999999887664 68888889999999999999999999999876 55788899
Q ss_pred HHHHHHcCCccCHHHHHHHHHHHHH--cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcC
Q 019340 175 LGISYLQAQPANAEEAVKLLYQASI--AGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFG 252 (342)
Q Consensus 175 Lg~~~~~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~y~~g 252 (342)
+|.+|+ ..+++.+|+..+.+... ++++..|..|+..|.. .+|..++...+-. .|..
T Consensus 380 ~a~all--~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~----~g~~~~a~~A~AE---------------~~~~- 437 (484)
T COG4783 380 LAQALL--KGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAE----LGNRAEALLARAE---------------GYAL- 437 (484)
T ss_pred HHHHHH--hcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHH----hCchHHHHHHHHH---------------HHHh-
Confidence 999999 77888899999998776 4689999999999986 5555555544433 3322
Q ss_pred CCCcccHHHHHHHHHHHHHc
Q 019340 253 EGLPLSHRQARKWMKRAADC 272 (342)
Q Consensus 253 ~g~~~~~~~A~~~~~~a~~~ 272 (342)
..++++|+..+..|.+.
T Consensus 438 ---~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 438 ---AGRLEQAIIFLMRASQQ 454 (484)
T ss_pred ---CCCHHHHHHHHHHHHHh
Confidence 22788888888888765
No 100
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.81 E-value=7.2e-06 Score=78.19 Aligned_cols=255 Identities=11% Similarity=0.001 Sum_probs=163.9
Q ss_pred HHHHHhhCCChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC--CHHHHHHHHHH
Q 019340 69 LNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLM 146 (342)
Q Consensus 69 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~ 146 (342)
+-+..-+...|++.+|...+....+...+ ....+-..|.++.. .|+.++|...|+..++.+ +...+..|..+
T Consensus 8 LY~~~il~e~g~~~~AL~~L~~~~~~I~D--k~~~~E~rA~ll~k----Lg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~ 81 (517)
T PF12569_consen 8 LYKNSILEEAGDYEEALEHLEKNEKQILD--KLAVLEKRAELLLK----LGRKEEAEKIYRELIDRNPDNYDYYRGLEEA 81 (517)
T ss_pred HHHHHHHHHCCCHHHHHHHHHhhhhhCCC--HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHCCCcHHHHHHHHHH
Confidence 33334444567777776555544444433 44555556666666 467777777777777764 33444444444
Q ss_pred Hhc-----CCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHHcCCccCHH-HHHHHHHHHHHcCCHHHHHHHHHHHhcCCCC
Q 019340 147 YWE-----MDKKEAAISLYRQAAVLG-DPAGQFNLGISYLQAQPANAE-EAVKLLYQASIAGHVRAQYQLALCLHRGRGV 219 (342)
Q Consensus 147 ~~~-----~~~~~~A~~~~~~a~~~~-~~~a~~~Lg~~~~~g~~~~~~-~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~ 219 (342)
... ..+.+.-..+|......- -..+.-.+...+..| .++. .+-.|+...+..|.|....+|-.+|..
T Consensus 82 ~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g--~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d---- 155 (517)
T PF12569_consen 82 LGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEG--DEFKERLDEYLRPQLRKGVPSLFSNLKPLYKD---- 155 (517)
T ss_pred HhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCH--HHHHHHHHHHHHHHHhcCCchHHHHHHHHHcC----
Confidence 311 124555566666554432 122222333333322 2343 344455567778888888888888764
Q ss_pred CCCHHHHHHHHHHHHH---C------------CC----HHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCC--HHHH
Q 019340 220 DFNLQEAARWYLRAAE---G------------GY----VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGH--GKAQ 278 (342)
Q Consensus 220 ~~~~~~A~~~~~~A~~---~------------~~----~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~ 278 (342)
+....--...+..-.. . .. ..+++.++..|.. .| ++++|+.+..+|++..+ ++-+
T Consensus 156 ~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~-~g---~~~~Al~~Id~aI~htPt~~ely 231 (517)
T PF12569_consen 156 PEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDY-LG---DYEKALEYIDKAIEHTPTLVELY 231 (517)
T ss_pred hhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHH-hC---CHHHHHHHHHHHHhcCCCcHHHH
Confidence 2111111122222111 0 01 2467889999954 44 99999999999999854 7889
Q ss_pred HHHHHHhhhcCCHHHHHHHHHHHHHcCcHHHHHHHHHHHhhcChhcHHHHHHHHHhhhcCC
Q 019340 279 LEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRAMP 339 (342)
Q Consensus 279 ~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 339 (342)
+..|.+|...|++++|..+++.|-.++..|-..|-...-..+..++.++|...+..+.+..
T Consensus 232 ~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~ 292 (517)
T PF12569_consen 232 MTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTRED 292 (517)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCC
Confidence 9999999999999999999999999999888888888888889999999999999887654
No 101
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=3.7e-06 Score=75.31 Aligned_cols=227 Identities=13% Similarity=0.006 Sum_probs=153.1
Q ss_pred CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHh-----------------------------
Q 019340 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYW----------------------------- 148 (342)
Q Consensus 100 ~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~----------------------------- 148 (342)
+...+..+|.++.. .||.++|+.-|+++.-.+ ...++-..|.++.
T Consensus 231 NvhLl~~lak~~~~----~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~ 306 (564)
T KOG1174|consen 231 NEHLMMALGKCLYY----NGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVH 306 (564)
T ss_pred cHHHHHHHhhhhhh----hcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhh
Confidence 66777888988888 589999999999875442 2233322333332
Q ss_pred -----cCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHcC--CHHHHHHHHHHHhcCCCC
Q 019340 149 -----EMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIAG--HVRAQYQLALCLHRGRGV 219 (342)
Q Consensus 149 -----~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~ 219 (342)
..++++.|+.+-+|+++. .+..++..-|.++. ..+++++|+-.|+.+.... .-+.+-.|-.||.-
T Consensus 307 ~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~--~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA---- 380 (564)
T KOG1174|consen 307 AQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLI--ALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLA---- 380 (564)
T ss_pred hhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHH--hccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHh----
Confidence 335666666666666644 55666666677766 6667777777777766543 45566666666665
Q ss_pred CCCHHHHHHHHHHHHHC--CCHHHHHHHH-HHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhhcCCHHHH
Q 019340 220 DFNLQEAARWYLRAAEG--GYVRAMYNTS-LCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKA 294 (342)
Q Consensus 220 ~~~~~~A~~~~~~A~~~--~~~~a~~~lg-~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A 294 (342)
.+.+++|...-+.+... .++.+...+| .++.. .+.--++|.+++++++.+ +...+-..++.++..+|.++++
T Consensus 381 ~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~---dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~ 457 (564)
T KOG1174|consen 381 QKRFKEANALANWTIRLFQNSARSLTLFGTLVLFP---DPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDI 457 (564)
T ss_pred hchHHHHHHHHHHHHHHhhcchhhhhhhcceeecc---CchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchH
Confidence 44566666666665553 4566666665 33332 244678999999999876 5688889999999999999999
Q ss_pred HHHHHHHHHcCcHH-HHHHHHHHHhhcChhcHHHHHHHHHhhhcCCCC
Q 019340 295 VVYLELATRAGETA-ADHVKNVILQQLSATSRDRAMLVVDSWRAMPSL 341 (342)
Q Consensus 295 ~~~~~~a~~~~~~~-a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 341 (342)
+..+++++..-++. -+..++-++. ...+..++...+...+.++|.
T Consensus 458 i~LLe~~L~~~~D~~LH~~Lgd~~~--A~Ne~Q~am~~y~~ALr~dP~ 503 (564)
T KOG1174|consen 458 IKLLEKHLIIFPDVNLHNHLGDIMR--AQNEPQKAMEYYYKALRQDPK 503 (564)
T ss_pred HHHHHHHHhhccccHHHHHHHHHHH--HhhhHHHHHHHHHHHHhcCcc
Confidence 99999998765444 4445555554 346777788877777666663
No 102
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.79 E-value=2e-05 Score=75.74 Aligned_cols=257 Identities=14% Similarity=0.065 Sum_probs=172.7
Q ss_pred hhHHhhHHHHHHHHHH---hCcCCCHHHHHHHHHHHHcCCCCcC-------CHHHHHHHHHHHHhC--CCHHHHHHHHHH
Q 019340 79 PQLRAASLVCKSWNDA---LRPLREAMVLLRWGKRFKHGRGVRK-------NLDKALDSFLKGAAR--GSTLAMVDAGLM 146 (342)
Q Consensus 79 ~~~~~a~~~~~~~~~~---~~~~~~a~a~~~lg~~y~~g~g~~~-------~~~~A~~~~~~A~~~--~~~~a~~~lg~~ 146 (342)
+...++.....+.+.. ....-.+.+++.+|++|-....... -..++++.+++|++. .|+.+.+.++.-
T Consensus 408 ~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if~lalq 487 (799)
T KOG4162|consen 408 KLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIFYLALQ 487 (799)
T ss_pred hhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 4444554443443331 1223356789999999876332211 255689999999886 489999999999
Q ss_pred HhcCCCHHHHHHHHHHHHhC---CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc-CC-----------------HHH
Q 019340 147 YWEMDKKEAAISLYRQAAVL---GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA-GH-----------------VRA 205 (342)
Q Consensus 147 ~~~~~~~~~A~~~~~~a~~~---~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~-~~-----------------~~a 205 (342)
|...++.+.|..+.+.+++. .++.+|..|+.++- ..+++..|+....-+++. ++ ++.
T Consensus 488 ~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlS--a~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~ 565 (799)
T KOG4162|consen 488 YAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLS--AQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREE 565 (799)
T ss_pred HHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHh--hhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHH
Confidence 99999999999999999877 67899999999988 788888888888877652 11 111
Q ss_pred -----HHHHHHHH---------hc--------CCC-CCCCHHHHHHHHHHHHHC--------C-------------C---
Q 019340 206 -----QYQLALCL---------HR--------GRG-VDFNLQEAARWYLRAAEG--------G-------------Y--- 238 (342)
Q Consensus 206 -----~~~lg~~~---------~~--------g~~-~~~~~~~A~~~~~~A~~~--------~-------------~--- 238 (342)
...|+..- .+ |.+ ...+..+|+..++++... + .
T Consensus 566 ~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~ 645 (799)
T KOG4162|consen 566 ALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSL 645 (799)
T ss_pred HHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCch
Confidence 01111100 01 111 234666677666665421 1 1
Q ss_pred ----HHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCC--HHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCc--HHHH
Q 019340 239 ----VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGH--GKAQLEHGLGLFTEGEMMKAVVYLELATRAGE--TAAD 310 (342)
Q Consensus 239 ----~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~--~~a~ 310 (342)
...|...+..+.... +.++|..|+.+|....+ +..++..|.++...|+.++|...|..|+..+| +.+.
T Consensus 646 ~~~~~~lwllaa~~~~~~~----~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~ 721 (799)
T KOG4162|consen 646 WYLLQKLWLLAADLFLLSG----NDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSM 721 (799)
T ss_pred HHHHHHHHHHHHHHHHhcC----CchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHH
Confidence 123445666665533 88999999999987754 77789999999999999999999999988754 5566
Q ss_pred HHHHHHHhhcChhcHHHHHHHHHhhhcCCCC
Q 019340 311 HVKNVILQQLSATSRDRAMLVVDSWRAMPSL 341 (342)
Q Consensus 311 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 341 (342)
+.++.++..+.....++++-+.....+..|.
T Consensus 722 ~Ala~~lle~G~~~la~~~~~L~dalr~dp~ 752 (799)
T KOG4162|consen 722 TALAELLLELGSPRLAEKRSLLSDALRLDPL 752 (799)
T ss_pred HHHHHHHHHhCCcchHHHHHHHHHHHhhCCC
Confidence 6666666555433444444477766665553
No 103
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.79 E-value=4.5e-05 Score=68.20 Aligned_cols=248 Identities=15% Similarity=-0.010 Sum_probs=167.4
Q ss_pred HHHHHHhhCCChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC-CC--HHHHHHHH
Q 019340 68 VLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR-GS--TLAMVDAG 144 (342)
Q Consensus 68 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~-~~--~~a~~~lg 144 (342)
.+..+...+..|++.+|..+..++.+. ...+...|.+|.--.++ .+|.+.|=.|..++++. ++ .......+
T Consensus 87 ~~~egl~~l~eG~~~qAEkl~~rnae~---~e~p~l~~l~aA~AA~q---rgd~~~an~yL~eaae~~~~~~l~v~ltra 160 (400)
T COG3071 87 ALNEGLLKLFEGDFQQAEKLLRRNAEH---GEQPVLAYLLAAEAAQQ---RGDEDRANRYLAEAAELAGDDTLAVELTRA 160 (400)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHhhhc---CcchHHHHHHHHHHHHh---cccHHHHHHHHHHHhccCCCchHHHHHHHH
Confidence 344555567889999998776665443 33566666676555554 68999999999999998 43 44556778
Q ss_pred HHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHcC---------------------
Q 019340 145 LMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIAG--------------------- 201 (342)
Q Consensus 145 ~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~~--------------------- 201 (342)
++....||++.|..-..++.+. .++++....-.+|. ..|+......++.+..+.+
T Consensus 161 rlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~--~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q 238 (400)
T COG3071 161 RLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYI--RLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQ 238 (400)
T ss_pred HHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHH--HhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHH
Confidence 8899999999999999998876 78888888888888 7777777766666554321
Q ss_pred -----------------------CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHcCCCCcc
Q 019340 202 -----------------------HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG-YVRAMYNTSLCYSFGEGLPL 257 (342)
Q Consensus 202 -----------------------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~~-~~~a~~~lg~~y~~g~g~~~ 257 (342)
+++....++.-+.. .++.++|.++.+.+++.. ++. .+.+--.. .+.
T Consensus 239 ~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~----l~~~~~A~~~i~~~Lk~~~D~~-L~~~~~~l-----~~~ 308 (400)
T COG3071 239 ARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIR----LGDHDEAQEIIEDALKRQWDPR-LCRLIPRL-----RPG 308 (400)
T ss_pred HhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHH----cCChHHHHHHHHHHHHhccChh-HHHHHhhc-----CCC
Confidence 12222222222222 456777888877777764 444 22222212 134
Q ss_pred cHHHHHHHHHHHHHc--CCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCcHHH-HHHHHHHHhhcChhcHHHHHHHHHh
Q 019340 258 SHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAA-DHVKNVILQQLSATSRDRAMLVVDS 334 (342)
Q Consensus 258 ~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~~a-~~~~~~~~~~~~~~~~~~a~~~~~~ 334 (342)
|+..=++..++.+.. +++..+..||.++...+.+.+|..+|+.|+...+... ...++-.+..+ ++..+|.++.++
T Consensus 309 d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~--g~~~~A~~~r~e 386 (400)
T COG3071 309 DPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQL--GEPEEAEQVRRE 386 (400)
T ss_pred CchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHc--CChHHHHHHHHH
Confidence 666666666676665 5577789999999999999999999999999875433 33344444444 555556555544
Q ss_pred h
Q 019340 335 W 335 (342)
Q Consensus 335 ~ 335 (342)
-
T Consensus 387 ~ 387 (400)
T COG3071 387 A 387 (400)
T ss_pred H
Confidence 3
No 104
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.77 E-value=7.1e-06 Score=77.31 Aligned_cols=262 Identities=12% Similarity=-0.009 Sum_probs=178.5
Q ss_pred HHHHHHHhhCCChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHH
Q 019340 67 DVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAG 144 (342)
Q Consensus 67 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg 144 (342)
....++...|..+++......++..+++-++.|+..| ..|..... .++-++|..+.+.++.. ....-|.-+|
T Consensus 9 ~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslA--mkGL~L~~----lg~~~ea~~~vr~glr~d~~S~vCwHv~g 82 (700)
T KOG1156|consen 9 ALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLA--MKGLTLNC----LGKKEEAYELVRLGLRNDLKSHVCWHVLG 82 (700)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHH--hccchhhc----ccchHHHHHHHHHHhccCcccchhHHHHH
Confidence 4567778889999999999999999998777555444 45655443 57999999999999885 3556778899
Q ss_pred HHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHcC--CHHHHHHHHHHHhcCCCCC
Q 019340 145 LMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIAG--HVRAQYQLALCLHRGRGVD 220 (342)
Q Consensus 145 ~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~ 220 (342)
.++...+++++|+++|+.|+.. +|-..+.-|+.+-. ..++++-......+.++.. .-..|..++..+.. .
T Consensus 83 l~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~--QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L----~ 156 (700)
T KOG1156|consen 83 LLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQI--QMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHL----L 156 (700)
T ss_pred HHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH--HHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHH----H
Confidence 9999999999999999999855 88889999988877 7888888777777776654 44445555555544 5
Q ss_pred CCHHHHHHHHHHHHHCC----C-HHHHHHHHHHHHcCCCC-cccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhhcCCHH
Q 019340 221 FNLQEAARWYLRAAEGG----Y-VRAMYNTSLCYSFGEGL-PLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMM 292 (342)
Q Consensus 221 ~~~~~A~~~~~~A~~~~----~-~~a~~~lg~~y~~g~g~-~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~ 292 (342)
+++..|....+.-.... + -.--.....+|....-. ....++|.+.+..--.. +.......-+.++...++++
T Consensus 157 g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lE 236 (700)
T KOG1156|consen 157 GEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLE 236 (700)
T ss_pred HHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHH
Confidence 57777776665544322 1 11122233333211000 11355555555443221 22333456777889999999
Q ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHhhc-ChhcHHHHHHHHHhhhcCCC
Q 019340 293 KAVVYLELATRAGETAADHVKNVILQQL-SATSRDRAMLVVDSWRAMPS 340 (342)
Q Consensus 293 ~A~~~~~~a~~~~~~~a~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~~ 340 (342)
+|...|...++.+|++-.++........ ...+......++...-.++|
T Consensus 237 eA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~ 285 (700)
T KOG1156|consen 237 EAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYP 285 (700)
T ss_pred hHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCc
Confidence 9999999999999888887776666554 34444444456666655554
No 105
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.76 E-value=4.4e-07 Score=86.29 Aligned_cols=202 Identities=16% Similarity=0.018 Sum_probs=158.0
Q ss_pred hCCChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC-CCHHHHHHHHHHHhcCCCH
Q 019340 75 SFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR-GSTLAMVDAGLMYWEMDKK 153 (342)
Q Consensus 75 ~~~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~-~~~~a~~~lg~~~~~~~~~ 153 (342)
++..|=...|...+.+. ..+-..-.||.. .++..+|..+..+-++. +++..+..+|.+.....=+
T Consensus 408 l~slGitksAl~I~Erl----------emw~~vi~CY~~----lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~y 473 (777)
T KOG1128|consen 408 LLSLGITKSALVIFERL----------EMWDPVILCYLL----LGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSLY 473 (777)
T ss_pred HHHcchHHHHHHHHHhH----------HHHHHHHHHHHH----hcccchHHHHHHHHhcCCCcchhHHHhhhhccChHHH
Confidence 34556666665444332 333445677777 46888999999998884 4666666777776655445
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Q 019340 154 EAAISLYRQAAVLGDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYL 231 (342)
Q Consensus 154 ~~A~~~~~~a~~~~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~ 231 (342)
++|.++.++ -+..|.+.+|.... ..+++.++.+.|+.+++. .....+|.+|.|..+ ..+++.|.++|.
T Consensus 474 EkawElsn~----~sarA~r~~~~~~~--~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALq----lek~q~av~aF~ 543 (777)
T KOG1128|consen 474 EKAWELSNY----ISARAQRSLALLIL--SNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQ----LEKEQAAVKAFH 543 (777)
T ss_pred HHHHHHhhh----hhHHHHHhhccccc--cchhHHHHHHHHHHHhhcCccchhHHHhccHHHHH----HhhhHHHHHHHH
Confidence 555544433 23458888888877 689999999999998775 579999999999988 779999999999
Q ss_pred HHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHc
Q 019340 232 RAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRA 304 (342)
Q Consensus 232 ~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~ 304 (342)
+++.. ++..+|.|++-.|.. .++..+|...+++|++- ++...+.|.-.+-.+.|++++|+..|.+.++.
T Consensus 544 rcvtL~Pd~~eaWnNls~ayi~----~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 544 RCVTLEPDNAEAWNNLSTAYIR----LKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred HHhhcCCCchhhhhhhhHHHHH----HhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 99876 789999999999975 44899999999999875 67778888888889999999999999998765
No 106
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.75 E-value=2.5e-07 Score=84.84 Aligned_cols=95 Identities=13% Similarity=0.116 Sum_probs=74.8
Q ss_pred cCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHH
Q 019340 118 RKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKL 193 (342)
Q Consensus 118 ~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~ 193 (342)
.+++++|+.+|.+|+.. +++.+++++|.+|...|++++|+..++++++. .++.+++.+|.+|. ..+++++|+.+
T Consensus 15 ~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~--~lg~~~eA~~~ 92 (356)
T PLN03088 15 DDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACM--KLEEYQTAKAA 92 (356)
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH--HhCCHHHHHHH
Confidence 47888888888888876 47778888888888888888888888888765 67788888888888 77888888888
Q ss_pred HHHHHHc--CCHHHHHHHHHHHh
Q 019340 194 LYQASIA--GHVRAQYQLALCLH 214 (342)
Q Consensus 194 ~~~a~~~--~~~~a~~~lg~~~~ 214 (342)
|+++++. +++.+...++.|..
T Consensus 93 ~~~al~l~P~~~~~~~~l~~~~~ 115 (356)
T PLN03088 93 LEKGASLAPGDSRFTKLIKECDE 115 (356)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHH
Confidence 8887764 57777777777743
No 107
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.75 E-value=5.2e-08 Score=86.42 Aligned_cols=253 Identities=13% Similarity=0.045 Sum_probs=145.3
Q ss_pred HHHhhCCChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcC
Q 019340 71 KIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEM 150 (342)
Q Consensus 71 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~ 150 (342)
.+...|..|++..+..... .............+.+.+.|.. .|.++..+.-....- .....+...++..+...
T Consensus 7 ~vrn~fy~G~Y~~~i~e~~--~~~~~~~~~~e~~~~~~Rs~iA----lg~~~~vl~ei~~~~-~~~l~av~~la~y~~~~ 79 (290)
T PF04733_consen 7 TVRNQFYLGNYQQCINEAS--LKSFSPENKLERDFYQYRSYIA----LGQYDSVLSEIKKSS-SPELQAVRLLAEYLSSP 79 (290)
T ss_dssp HHHHHHCTT-HHHHCHHHH--CHTSTCHHHHHHHHHHHHHHHH----TT-HHHHHHHS-TTS-SCCCHHHHHHHHHHCTS
T ss_pred HHHHHHHhhhHHHHHHHhh--ccCCCchhHHHHHHHHHHHHHH----cCChhHHHHHhccCC-ChhHHHHHHHHHHHhCc
Confidence 4555677788887764333 1111111122344445555555 345554443332211 12344555666666555
Q ss_pred CCHHHHHHHHHHHHhC----CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCCCHHHH
Q 019340 151 DKKEAAISLYRQAAVL----GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEA 226 (342)
Q Consensus 151 ~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A 226 (342)
.+.++++.-++..+.. .++-.....|.++. ..+++++|++.+.+. ++.++....-.+|.. ..+.+.|
T Consensus 80 ~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~--~~~~~~~AL~~l~~~---~~lE~~al~Vqi~L~----~~R~dlA 150 (290)
T PF04733_consen 80 SDKESALEELKELLADQAGESNEIVQLLAATILF--HEGDYEEALKLLHKG---GSLELLALAVQILLK----MNRPDLA 150 (290)
T ss_dssp TTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHC--CCCHHHHHHCCCTTT---TCHHHHHHHHHHHHH----TT-HHHH
T ss_pred cchHHHHHHHHHHHHhccccccHHHHHHHHHHHH--HcCCHHHHHHHHHcc---CcccHHHHHHHHHHH----cCCHHHH
Confidence 6667777666654432 23344444556666 677888888887765 667777777777776 5678888
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHH---cCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhhcCCHHHHHHHHHHH
Q 019340 227 ARWYLRAAEGGYVRAMYNTSLCYS---FGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELA 301 (342)
Q Consensus 227 ~~~~~~A~~~~~~~a~~~lg~~y~---~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a 301 (342)
.+.++..-+.++-....+|+..+. .|. ..+.+|...|+...+. ..+..++.++.++...|++++|...++.|
T Consensus 151 ~k~l~~~~~~~eD~~l~qLa~awv~l~~g~---e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~a 227 (290)
T PF04733_consen 151 EKELKNMQQIDEDSILTQLAEAWVNLATGG---EKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEA 227 (290)
T ss_dssp HHHHHHHHCCSCCHHHHHHHHHHHHHHHTT---TCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHhCc---hhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 888888766654444444444332 222 3788888888887765 34566677888888888888888888888
Q ss_pred HHcCcHHHHHHHHHHHhh-cChhcHHHHHHHHHhhhcCCCCC
Q 019340 302 TRAGETAADHVKNVILQQ-LSATSRDRAMLVVDSWRAMPSLH 342 (342)
Q Consensus 302 ~~~~~~~a~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~ 342 (342)
++.++.+.....+.+... ..+...+.+.+...+++..+|.|
T Consensus 228 l~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h 269 (290)
T PF04733_consen 228 LEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNH 269 (290)
T ss_dssp CCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTS
T ss_pred HHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCC
Confidence 877554444433333322 23333355667777777777765
No 108
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.74 E-value=1.5e-05 Score=75.39 Aligned_cols=213 Identities=16% Similarity=0.033 Sum_probs=163.4
Q ss_pred CCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCccCHHHHHHHHHH
Q 019340 119 KNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQFNLGISYLQAQPANAEEAVKLLYQ 196 (342)
Q Consensus 119 ~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~ 196 (342)
+-.+.-..++++|+.. .....++..+..++..||...|...+.+|.+...-.--..|+-+-..++...++.|..+|.+
T Consensus 564 gt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llak 643 (913)
T KOG0495|consen 564 GTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAK 643 (913)
T ss_pred CcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHH
Confidence 5567777788888885 34556677778888889999999999998876332333344444444477889999999988
Q ss_pred HHHc-CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc-
Q 019340 197 ASIA-GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC- 272 (342)
Q Consensus 197 a~~~-~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~- 272 (342)
+-.. +..+.++.-+.+-.. ..+.++|+++++++++. .+..-+..+|+++.. ..+.+.|...|......
T Consensus 644 ar~~sgTeRv~mKs~~~er~----ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~----~~~ie~aR~aY~~G~k~c 715 (913)
T KOG0495|consen 644 ARSISGTERVWMKSANLERY----LDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQ----MENIEMAREAYLQGTKKC 715 (913)
T ss_pred HhccCCcchhhHHHhHHHHH----hhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHH----HHHHHHHHHHHHhccccC
Confidence 7554 577777777766654 56789999999999886 577888889999965 33889999988888776
Q ss_pred -CCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCcHHHHHHHHHHHhhcChhcHHHHHHHHHhhhcCC
Q 019340 273 -GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRAMP 339 (342)
Q Consensus 273 -~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 339 (342)
+...-+..|+.+-...|+..+|...+.++.-.+|.++...+..+.-.+..+..+.|..+..+.++.-
T Consensus 716 P~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQec 783 (913)
T KOG0495|consen 716 PNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQEC 783 (913)
T ss_pred CCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 6677788888888888899999999999988888888888888888888888888888655544433
No 109
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.74 E-value=6.9e-07 Score=79.38 Aligned_cols=168 Identities=20% Similarity=0.211 Sum_probs=125.7
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc----CC----HHHHHHHHHHHhcCCCCCCC
Q 019340 151 DKKEAAISLYRQAAVLGDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA----GH----VRAQYQLALCLHRGRGVDFN 222 (342)
Q Consensus 151 ~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~----~~----~~a~~~lg~~~~~g~~~~~~ 222 (342)
.|+++|...|.+|+ .+|. ..+++++|..+|.++++. ++ ..++...+.+|.. .+
T Consensus 29 ~~~e~Aa~~y~~Aa------------~~fk--~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~-----~~ 89 (282)
T PF14938_consen 29 PDYEEAADLYEKAA------------NCFK--LAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKK-----GD 89 (282)
T ss_dssp HHHHHHHHHHHHHH------------HHHH--HTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-----TT
T ss_pred CCHHHHHHHHHHHH------------HHHH--HHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-----hC
Confidence 48999999888875 4455 667888888888887652 22 3556778888876 28
Q ss_pred HHHHHHHHHHHHHC----CC----HHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc----CC----HHHHHHHHHHhh
Q 019340 223 LQEAARWYLRAAEG----GY----VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC----GH----GKAQLEHGLGLF 286 (342)
Q Consensus 223 ~~~A~~~~~~A~~~----~~----~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~~----~~a~~~Lg~~~~ 286 (342)
+++|+.+|++|++. |. +..+..+|.+|....| ++++|+.+|++|++. +. ...+.++|.++.
T Consensus 90 ~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~---d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~ 166 (282)
T PF14938_consen 90 PDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLG---DYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYA 166 (282)
T ss_dssp HHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT-----HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHH
Confidence 99999999999874 54 4578899999965324 999999999999884 32 345579999999
Q ss_pred hcCCHHHHHHHHHHHHHcC------cHHH-HHHHHHHHhhcChhcHHHHHHHHHhhhcCCC
Q 019340 287 TEGEMMKAVVYLELATRAG------ETAA-DHVKNVILQQLSATSRDRAMLVVDSWRAMPS 340 (342)
Q Consensus 287 ~~~~~~~A~~~~~~a~~~~------~~~a-~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 340 (342)
..|++++|+..|++..... ...+ .+.+..++.++..+|...|...++++....|
T Consensus 167 ~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~ 227 (282)
T PF14938_consen 167 RLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDP 227 (282)
T ss_dssp HTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTST
T ss_pred HhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 9999999999999987641 2223 3456778888888999999999999987765
No 110
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.71 E-value=5.7e-06 Score=85.53 Aligned_cols=250 Identities=13% Similarity=0.017 Sum_probs=161.3
Q ss_pred hCCChhHHhhHHHHHHHHHHhCcCC---CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC----CC----HHHHHHH
Q 019340 75 SFTLPQLRAASLVCKSWNDALRPLR---EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR----GS----TLAMVDA 143 (342)
Q Consensus 75 ~~~~~~~~~a~~~~~~~~~~~~~~~---~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~----~~----~~a~~~l 143 (342)
.+..|++.++...+........... ...+...+|.++.. .+++++|..+++++... ++ ..+...+
T Consensus 462 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~----~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~l 537 (903)
T PRK04841 462 AINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHC----KGELARALAMMQQTEQMARQHDVYHYALWSLLQQ 537 (903)
T ss_pred HHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHH
Confidence 4567888888877777665433221 12466778888776 58999999999999863 22 2456788
Q ss_pred HHHHhcCCCHHHHHHHHHHHHhC----CC------HHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc----C---CHHHH
Q 019340 144 GLMYWEMDKKEAAISLYRQAAVL----GD------PAGQFNLGISYLQAQPANAEEAVKLLYQASIA----G---HVRAQ 206 (342)
Q Consensus 144 g~~~~~~~~~~~A~~~~~~a~~~----~~------~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~----~---~~~a~ 206 (342)
|.++...|++++|..+++++++. +. ......+|.++. ..|++++|...+++++.. + ...++
T Consensus 538 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~--~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~ 615 (903)
T PRK04841 538 SEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLW--EWARLDEAEQCARKGLEVLSNYQPQQQLQCL 615 (903)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHH--HhcCHHHHHHHHHHhHHhhhccCchHHHHHH
Confidence 99999999999999999998753 11 223456788887 789999999999998663 1 24455
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHHHHC----CC-HHHHH---HHHHHHHcCCCCcccHHHHHHHHHHHHHcC--CH-
Q 019340 207 YQLALCLHRGRGVDFNLQEAARWYLRAAEG----GY-VRAMY---NTSLCYSFGEGLPLSHRQARKWMKRAADCG--HG- 275 (342)
Q Consensus 207 ~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~----~~-~~a~~---~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~- 275 (342)
..+|.++.. .++++.|..++.++... +. ..... .+...+....| +.+.|..|+....... ..
T Consensus 616 ~~la~~~~~----~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---~~~~A~~~l~~~~~~~~~~~~ 688 (903)
T PRK04841 616 AMLAKISLA----RGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTG---DKEAAANWLRQAPKPEFANNH 688 (903)
T ss_pred HHHHHHHHH----cCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCC---CHHHHHHHHHhcCCCCCccch
Confidence 667777776 67899999999888653 11 11111 11111111123 6777777766654321 11
Q ss_pred ---HHHHHHHHHhhhcCCHHHHHHHHHHHHHc----Cc--HHHHHHHHHHHhhcChhcHHHHHHHHHhhhc
Q 019340 276 ---KAQLEHGLGLFTEGEMMKAVVYLELATRA----GE--TAADHVKNVILQQLSATSRDRAMLVVDSWRA 337 (342)
Q Consensus 276 ---~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~----~~--~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 337 (342)
.....++.++...|++++|...++++++. +. ..+.........+...++.++|.+.+.+...
T Consensus 689 ~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~ 759 (903)
T PRK04841 689 FLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALK 759 (903)
T ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 11346777777788888888888887664 21 2233333444444555667777766665543
No 111
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.71 E-value=3.8e-07 Score=83.62 Aligned_cols=104 Identities=19% Similarity=0.057 Sum_probs=91.2
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhc
Q 019340 140 MVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLALCLHR 215 (342)
Q Consensus 140 ~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~ 215 (342)
+...|..++..|++++|+.+|++++.. +++.+++++|.+|. ..+++++|+..++++++. .++.+++++|.+|..
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~--~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~ 82 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANI--KLGNFTEAVADANKAIELDPSLAKAYLRKGTACMK 82 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence 455678888899999999999999866 78999999999999 889999999999999875 589999999999987
Q ss_pred CCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHH
Q 019340 216 GRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCY 249 (342)
Q Consensus 216 g~~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y 249 (342)
.+++++|+.+|++++.. ++..+...++.|.
T Consensus 83 ----lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~ 114 (356)
T PLN03088 83 ----LEEYQTAKAALEKGASLAPGDSRFTKLIKECD 114 (356)
T ss_pred ----hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 78999999999999887 5777888887775
No 112
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=2e-06 Score=79.27 Aligned_cols=197 Identities=16% Similarity=0.086 Sum_probs=147.8
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHhC-CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHcC-CHHHHHH-HHHHHhc
Q 019340 139 AMVDAGLMYWEMDKKEAAISLYRQAAVL-GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIAG-HVRAQYQ-LALCLHR 215 (342)
Q Consensus 139 a~~~lg~~~~~~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~~-~~~a~~~-lg~~~~~ 215 (342)
..-++|.......+++.|++.|.++++. .+..-+.+.+-+|+ ..+.+.+.+....++++.| ...+.++ |+.++..
T Consensus 226 ~ek~lgnaaykkk~f~~a~q~y~~a~el~~~it~~~n~aA~~~--e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r 303 (539)
T KOG0548|consen 226 KEKELGNAAYKKKDFETAIQHYAKALELATDITYLNNIAAVYL--ERGKYAECIELCEKAVEVGRELRADYKLIAKALAR 303 (539)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhHhhhhHHHHHHHHHHH--hccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3467999999999999999999999877 55566777888898 8889999998888888875 3333332 3333322
Q ss_pred CC---CCCCCHHHHHHHHHHHHHCC-C---------------------------HHHHHHHHHHHHcCCCCcccHHHHHH
Q 019340 216 GR---GVDFNLQEAARWYLRAAEGG-Y---------------------------VRAMYNTSLCYSFGEGLPLSHRQARK 264 (342)
Q Consensus 216 g~---~~~~~~~~A~~~~~~A~~~~-~---------------------------~~a~~~lg~~y~~g~g~~~~~~~A~~ 264 (342)
++ +..++++.++.+|.+++... . ......-|..++. .+|+.+|+.
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk----~gdy~~Av~ 379 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFK----KGDYPEAVK 379 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHh----ccCHHHHHH
Confidence 11 12578999999999997531 1 1112233455543 349999999
Q ss_pred HHHHHHHc--CCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCcHHHHHHHHHHHhhcChhcHHHHHHHHHhhhcCCCC
Q 019340 265 WMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPSL 341 (342)
Q Consensus 265 ~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 341 (342)
+|.+|+.. .++..+-|.+.+|...+++..|+.-.+.++++++.....+......+....+++.|.+.++.-+...|+
T Consensus 380 ~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~ 458 (539)
T KOG0548|consen 380 HYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPS 458 (539)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch
Confidence 99999987 567888999999999999999999999999998776655555555555568889999988887777664
No 113
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.69 E-value=1.9e-06 Score=84.50 Aligned_cols=177 Identities=19% Similarity=0.134 Sum_probs=143.0
Q ss_pred cCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHH
Q 019340 118 RKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKL 193 (342)
Q Consensus 118 ~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~ 193 (342)
.++.+.|+..|-+++..+ -+.++..||.+|..--|...|.++|.+|-+. ++.++...++..|. +..+.+.|...
T Consensus 471 rK~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtya--e~~~we~a~~I 548 (1238)
T KOG1127|consen 471 RKNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYA--EESTWEEAFEI 548 (1238)
T ss_pred hhhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhh--ccccHHHHHHH
Confidence 577889999999999875 6778889999998888999999999999877 56677777888888 88888888888
Q ss_pred HHHHHHcCC----HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHH
Q 019340 194 LYQASIAGH----VRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMK 267 (342)
Q Consensus 194 ~~~a~~~~~----~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~ 267 (342)
..++.+... ...+...|..|.. .++...|+.+|+-|+.. .+..+|..+|.+|.. .| .+.-|++.|.
T Consensus 549 ~l~~~qka~a~~~k~nW~~rG~yyLe----a~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~-sG---ry~~AlKvF~ 620 (1238)
T KOG1127|consen 549 CLRAAQKAPAFACKENWVQRGPYYLE----AHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPE-SG---RYSHALKVFT 620 (1238)
T ss_pred HHHHhhhchHHHHHhhhhhccccccC----ccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHh-cC---ceehHHHhhh
Confidence 776666543 3445567877777 77999999999999876 577889999999965 33 8899999999
Q ss_pred HHHHcCC--HHHHHHHHHHhhhcCCHHHHHHHHHHHHHc
Q 019340 268 RAADCGH--GKAQLEHGLGLFTEGEMMKAVVYLELATRA 304 (342)
Q Consensus 268 ~a~~~~~--~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~ 304 (342)
+|...++ .-+.|..+.+....|++++|+..+..-+..
T Consensus 621 kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~ 659 (1238)
T KOG1127|consen 621 KASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYA 659 (1238)
T ss_pred hhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 9987644 556688888899999999999988877643
No 114
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.69 E-value=5.6e-07 Score=73.53 Aligned_cols=93 Identities=18% Similarity=0.179 Sum_probs=71.6
Q ss_pred CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC-----CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHH
Q 019340 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG-----STLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQ 172 (342)
Q Consensus 100 ~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~-----~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~ 172 (342)
.+..++.+|.++.. .+++++|+.+|++++... .+.+++++|.+|...|++++|+.+|++++.. ....++
T Consensus 34 ~a~~~~~~g~~~~~----~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~ 109 (168)
T CHL00033 34 EAFTYYRDGMSAQS----EGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQAL 109 (168)
T ss_pred HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHH
Confidence 46778899999987 589999999999998762 2357899999999999999999999998865 667888
Q ss_pred HHHHHHHHc-C----CccCHHHHHHHHHH
Q 019340 173 FNLGISYLQ-A----QPANAEEAVKLLYQ 196 (342)
Q Consensus 173 ~~Lg~~~~~-g----~~~~~~~A~~~~~~ 196 (342)
.++|.++.. | ..++++.|+.+|.+
T Consensus 110 ~~la~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 110 NNMAVICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHHHHHHhhHHHHHcccHHHHHHHHHH
Confidence 888888873 2 34455544444433
No 115
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.67 E-value=1.4e-06 Score=71.42 Aligned_cols=93 Identities=20% Similarity=0.312 Sum_probs=62.0
Q ss_pred CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC-----CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHH
Q 019340 99 REAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG-----STLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAG 171 (342)
Q Consensus 99 ~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~-----~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a 171 (342)
..+.+++.+|..|.. .+++++|+.+|++++... ...+++++|.++...|++++|+.+|++++.. .++.+
T Consensus 33 ~~a~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 108 (172)
T PRK02603 33 KEAFVYYRDGMSAQA----DGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSA 108 (172)
T ss_pred hhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHH
Confidence 456677777777777 477788888888777542 1356777777777777777777777777654 55666
Q ss_pred HHHHHHHHHcCCccCHHHHHHHHHHH
Q 019340 172 QFNLGISYLQAQPANAEEAVKLLYQA 197 (342)
Q Consensus 172 ~~~Lg~~~~~g~~~~~~~A~~~~~~a 197 (342)
+..+|.++. ..++...+...+.++
T Consensus 109 ~~~lg~~~~--~~g~~~~a~~~~~~A 132 (172)
T PRK02603 109 LNNIAVIYH--KRGEKAEEAGDQDEA 132 (172)
T ss_pred HHHHHHHHH--HcCChHhHhhCHHHH
Confidence 667777766 555555555444443
No 116
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.67 E-value=1.1e-06 Score=71.98 Aligned_cols=112 Identities=16% Similarity=0.159 Sum_probs=88.5
Q ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--C---CHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHH
Q 019340 135 GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--G---DPAGQFNLGISYLQAQPANAEEAVKLLYQASIA--GHVRAQY 207 (342)
Q Consensus 135 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~---~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~ 207 (342)
..+.+++.+|..+...|++++|+.+|++++.. + .+.+++++|.++. ..+++++|+.+|++++.. .++.++.
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~--~~g~~~~A~~~~~~al~~~p~~~~~~~ 110 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYA--SNGEHDKALEYYHQALELNPKQPSALN 110 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHhCcccHHHHH
Confidence 36678899999999999999999999999864 2 2478999999999 889999999999999885 5788999
Q ss_pred HHHHHHhcCCCC----------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 019340 208 QLALCLHRGRGV----------DFNLQEAARWYLRAAEGGYVRAMYNTSLCY 249 (342)
Q Consensus 208 ~lg~~~~~g~~~----------~~~~~~A~~~~~~A~~~~~~~a~~~lg~~y 249 (342)
.+|.+|..-... ...+.+|..++++++..+... +..++.++
T Consensus 111 ~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~-~~~~~~~~ 161 (172)
T PRK02603 111 NIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN-YIEAQNWL 161 (172)
T ss_pred HHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh-HHHHHHHH
Confidence 999998752110 112689999999999876554 43444444
No 117
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.66 E-value=7.5e-07 Score=70.88 Aligned_cols=109 Identities=22% Similarity=0.113 Sum_probs=55.4
Q ss_pred CCHHHHHHHHHHHHhCC--C---HHHHHHHHHHHhcCCCHHHHHHHHHHHHhCC-C----HHHHHHHHHHHHcCCccCHH
Q 019340 119 KNLDKALDSFLKGAARG--S---TLAMVDAGLMYWEMDKKEAAISLYRQAAVLG-D----PAGQFNLGISYLQAQPANAE 188 (342)
Q Consensus 119 ~~~~~A~~~~~~A~~~~--~---~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~-~----~~a~~~Lg~~~~~g~~~~~~ 188 (342)
++..++...+++.+... . ..+.+.+|.++...|++++|+..|+.+++.. + +.+.+.|+.++. ..++++
T Consensus 25 ~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~--~~~~~d 102 (145)
T PF09976_consen 25 GDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILL--QQGQYD 102 (145)
T ss_pred CCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHH--HcCCHH
Confidence 44444444444444431 1 2344555555555566666666665555442 1 234555555555 555566
Q ss_pred HHHHHHHHHHHc-CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Q 019340 189 EAVKLLYQASIA-GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRA 233 (342)
Q Consensus 189 ~A~~~~~~a~~~-~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A 233 (342)
+|+..++..... ..+.+...+|.+|.. .+++++|+..|++|
T Consensus 103 ~Al~~L~~~~~~~~~~~~~~~~Gdi~~~----~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 103 EALATLQQIPDEAFKALAAELLGDIYLA----QGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHhccCcchHHHHHHHHHHHHHH----CCCHHHHHHHHHHh
Confidence 666555442221 134445555666555 45566666666554
No 118
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.63 E-value=3.4e-06 Score=70.96 Aligned_cols=154 Identities=17% Similarity=0.072 Sum_probs=103.4
Q ss_pred hCCChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCCCH--HHH-HHHHHHHhcCC
Q 019340 75 SFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGST--LAM-VDAGLMYWEMD 151 (342)
Q Consensus 75 ~~~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~--~a~-~~lg~~~~~~~ 151 (342)
.+.-+.+..|+....+.....+......-+ -|+.+.. .+++++|+++|..-++.+.. ..+ ..++.+- ..|
T Consensus 62 Ald~~~~~lAq~C~~~L~~~fp~S~RV~~l--kam~lEa----~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilk-a~G 134 (289)
T KOG3060|consen 62 ALDTGRDDLAQKCINQLRDRFPGSKRVGKL--KAMLLEA----TGNYKEAIEYYESLLEDDPTDTVIRKRKLAILK-AQG 134 (289)
T ss_pred HHHhcchHHHHHHHHHHHHhCCCChhHHHH--HHHHHHH----hhchhhHHHHHHHHhccCcchhHHHHHHHHHHH-HcC
Confidence 345566666665555555555443333333 3555555 57888888888888876522 222 2344333 455
Q ss_pred CHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHH--HcCCHHHHHHHHHHHhcCCCCCCCHHHHH
Q 019340 152 KKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQAS--IAGHVRAQYQLALCLHRGRGVDFNLQEAA 227 (342)
Q Consensus 152 ~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~--~~~~~~a~~~lg~~~~~g~~~~~~~~~A~ 227 (342)
+.-+||+-+..-++. +|.+||..|+.+|. ..+++++|.-||+..+ .+-++..+..||.+++.-+| ..|+.-|.
T Consensus 135 K~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~--~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg-~eN~~~ar 211 (289)
T KOG3060|consen 135 KNLEAIKELNEYLDKFMNDQEAWHELAEIYL--SEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGG-AENLELAR 211 (289)
T ss_pred CcHHHHHHHHHHHHHhcCcHHHHHHHHHHHH--hHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhh-HHHHHHHH
Confidence 566888888877765 88888888888888 8888888888888854 45677777788877664333 56788888
Q ss_pred HHHHHHHHCCC
Q 019340 228 RWYLRAAEGGY 238 (342)
Q Consensus 228 ~~~~~A~~~~~ 238 (342)
++|.+|++...
T Consensus 212 kyy~~alkl~~ 222 (289)
T KOG3060|consen 212 KYYERALKLNP 222 (289)
T ss_pred HHHHHHHHhCh
Confidence 88888888754
No 119
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.61 E-value=1.5e-07 Score=64.54 Aligned_cols=61 Identities=26% Similarity=0.451 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCcc-CHHHHHHHHHHHHH
Q 019340 137 TLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPA-NAEEAVKLLYQASI 199 (342)
Q Consensus 137 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~-~~~~A~~~~~~a~~ 199 (342)
+..+..+|.++...|++++|+.+|.++++. +++.+++++|.+|. ..+ ++++|+.+|+++++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~--~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYM--KLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHH--HTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH--HhCccHHHHHHHHHHHHH
Confidence 444555555555555555555555555433 34555555555555 444 45555555555543
No 120
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.59 E-value=1.4e-06 Score=66.40 Aligned_cols=93 Identities=15% Similarity=0.188 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC-----CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--C---CHHH
Q 019340 102 MVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG-----STLAMVDAGLMYWEMDKKEAAISLYRQAAVL--G---DPAG 171 (342)
Q Consensus 102 ~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~-----~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~---~~~a 171 (342)
.++|.+|.++.. .|+.++|+.+|++|+..| -..+++.+|..+...|++++|+..+++++.. + +...
T Consensus 2 ~~~~~~A~a~d~----~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l 77 (120)
T PF12688_consen 2 RALYELAWAHDS----LGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAAL 77 (120)
T ss_pred chHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHH
Confidence 456777777777 578888888888888764 1346677888888888888888888887754 3 4456
Q ss_pred HHHHHHHHHcCCccCHHHHHHHHHHHHHc
Q 019340 172 QFNLGISYLQAQPANAEEAVKLLYQASIA 200 (342)
Q Consensus 172 ~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~ 200 (342)
...++.++. ..++.++|+.++..++..
T Consensus 78 ~~f~Al~L~--~~gr~~eAl~~~l~~la~ 104 (120)
T PF12688_consen 78 RVFLALALY--NLGRPKEALEWLLEALAE 104 (120)
T ss_pred HHHHHHHHH--HCCCHHHHHHHHHHHHHH
Confidence 666777777 677888888888776643
No 121
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.57 E-value=2.9e-05 Score=65.43 Aligned_cols=162 Identities=13% Similarity=-0.002 Sum_probs=87.8
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHcC--CHHH-HHHHHHHHhcCC
Q 019340 143 AGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIAG--HVRA-QYQLALCLHRGR 217 (342)
Q Consensus 143 lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~~--~~~a-~~~lg~~~~~g~ 217 (342)
+.......++.+-|-.++.+.-+. +.....-.-|+.+. ..+.+++|+++|...++.+ +... .-.++.+-..|.
T Consensus 58 V~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lE--a~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK 135 (289)
T KOG3060|consen 58 VFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLE--ATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGK 135 (289)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHH--HhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCC
Confidence 334444455566666665554332 55555555555555 5566666666666665543 1111 123444444333
Q ss_pred CCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCC--HHHHHHHHHHhhhcC---C
Q 019340 218 GVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGH--GKAQLEHGLGLFTEG---E 290 (342)
Q Consensus 218 ~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~Lg~~~~~~~---~ 290 (342)
..+|++.+..-++. +|.++|..|+.+|.. ..++++|..||+..+-..+ +-.+-.||.+++-.| |
T Consensus 136 -----~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~----~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN 206 (289)
T KOG3060|consen 136 -----NLEAIKELNEYLDKFMNDQEAWHELAEIYLS----EGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAEN 206 (289)
T ss_pred -----cHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh----HhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHH
Confidence 22566666555554 566666666666653 3367777777776655433 233345666665554 5
Q ss_pred HHHHHHHHHHHHHcCcHHHHHHHHH
Q 019340 291 MMKAVVYLELATRAGETAADHVKNV 315 (342)
Q Consensus 291 ~~~A~~~~~~a~~~~~~~a~~~~~~ 315 (342)
++-|..||.+|+++.+.+.....++
T Consensus 207 ~~~arkyy~~alkl~~~~~ral~GI 231 (289)
T KOG3060|consen 207 LELARKYYERALKLNPKNLRALFGI 231 (289)
T ss_pred HHHHHHHHHHHHHhChHhHHHHHHH
Confidence 6667777777776665444444443
No 122
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.56 E-value=1.6e-06 Score=66.00 Aligned_cols=91 Identities=18% Similarity=0.116 Sum_probs=45.9
Q ss_pred HHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC--C---HHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--C---CHHHH
Q 019340 103 VLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--S---TLAMVDAGLMYWEMDKKEAAISLYRQAAVL--G---DPAGQ 172 (342)
Q Consensus 103 a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~---~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~---~~~a~ 172 (342)
.++.+|..+.. .+++++|+..|.+++... + +.+++.+|.++...|++++|+.+|++++.. + .+.++
T Consensus 4 ~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~ 79 (119)
T TIGR02795 4 AYYDAALLVLK----AGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDAL 79 (119)
T ss_pred HHHHHHHHHHH----cCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHH
Confidence 34455555544 355555555555555431 1 334555555555555555555555555432 1 13455
Q ss_pred HHHHHHHHcCCccCHHHHHHHHHHHHH
Q 019340 173 FNLGISYLQAQPANAEEAVKLLYQASI 199 (342)
Q Consensus 173 ~~Lg~~~~~g~~~~~~~A~~~~~~a~~ 199 (342)
+.+|.++. ..+++++|+.+|.++++
T Consensus 80 ~~~~~~~~--~~~~~~~A~~~~~~~~~ 104 (119)
T TIGR02795 80 LKLGMSLQ--ELGDKEKAKATLQQVIK 104 (119)
T ss_pred HHHHHHHH--HhCChHHHHHHHHHHHH
Confidence 55555555 45555555555555544
No 123
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.56 E-value=2.4e-07 Score=63.50 Aligned_cols=64 Identities=22% Similarity=0.333 Sum_probs=58.7
Q ss_pred CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCC-CHHHHHHHHHHHHhCC
Q 019340 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMD-KKEAAISLYRQAAVLG 167 (342)
Q Consensus 100 ~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~-~~~~A~~~~~~a~~~~ 167 (342)
++..++.+|.++.. .+++++|+.+|+++++. +++.+++++|.+|...| ++++|++.++++++.+
T Consensus 2 ~a~~~~~~g~~~~~----~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~ 68 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQ----QGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLD 68 (69)
T ss_dssp SHHHHHHHHHHHHH----TTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence 67889999999999 69999999999999996 48899999999999999 7999999999998754
No 124
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.54 E-value=2e-06 Score=65.47 Aligned_cols=94 Identities=17% Similarity=0.170 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CC---HHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--C---CHHHH
Q 019340 137 TLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GD---PAGQFNLGISYLQAQPANAEEAVKLLYQASIA--G---HVRAQ 206 (342)
Q Consensus 137 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~---~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~---~~~a~ 206 (342)
+++++.+|..+...|++++|+..|++++.. ++ +.+.+.+|.++. ..++++.|+.+|++++.. + .+.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~A~~~~~~~~~~~p~~~~~~~~~ 79 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYY--AQGKYADAAKAFLAVVKKYPKSPKAPDAL 79 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH--hhccHHHHHHHHHHHHHHCCCCCcccHHH
Confidence 467788899998899999999999998864 22 568888999988 888899999999988763 3 36778
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHHHHC
Q 019340 207 YQLALCLHRGRGVDFNLQEAARWYLRAAEG 236 (342)
Q Consensus 207 ~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~ 236 (342)
+.+|.++.. .+++++|+.+|+++++.
T Consensus 80 ~~~~~~~~~----~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 80 LKLGMSLQE----LGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHHHH----hCChHHHHHHHHHHHHH
Confidence 888888876 66788888888887765
No 125
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.54 E-value=3.3e-05 Score=70.87 Aligned_cols=146 Identities=21% Similarity=0.153 Sum_probs=125.3
Q ss_pred CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHH
Q 019340 134 RGSTLAMVDAGLMYWEMDKKEAAISLYRQAAV--LGDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQL 209 (342)
Q Consensus 134 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~l 209 (342)
.+...++|..+..+...|.+++|...+...+. ++|+..+-..+.++. ..++..+|.+.+++++.. +.+....++
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~--~~nk~~~A~e~~~kal~l~P~~~~l~~~~ 380 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILL--EANKAKEAIERLKKALALDPNSPLLQLNL 380 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHH--HcCChHHHHHHHHHHHhcCCCccHHHHHH
Confidence 36778999999999999999999999999764 489999999999999 899999999999998875 568889999
Q ss_pred HHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHhhh
Q 019340 210 ALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHGLGLFT 287 (342)
Q Consensus 210 g~~~~~g~~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~ 287 (342)
|..|.. .+++.+|+..++..... .++..|..|+..|.... +...+....+..|..
T Consensus 381 a~all~----~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g-------------------~~~~a~~A~AE~~~~ 437 (484)
T COG4783 381 AQALLK----GGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELG-------------------NRAEALLARAEGYAL 437 (484)
T ss_pred HHHHHh----cCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhC-------------------chHHHHHHHHHHHHh
Confidence 999998 45778999999998875 68999999999995411 236667777888888
Q ss_pred cCCHHHHHHHHHHHHHc
Q 019340 288 EGEMMKAVVYLELATRA 304 (342)
Q Consensus 288 ~~~~~~A~~~~~~a~~~ 304 (342)
.|++++|+..+.+|.+.
T Consensus 438 ~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 438 AGRLEQAIIFLMRASQQ 454 (484)
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 99999999999999875
No 126
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.52 E-value=5.8e-06 Score=65.76 Aligned_cols=125 Identities=15% Similarity=0.110 Sum_probs=88.9
Q ss_pred HHHHHHhhCCChhHHhhHHHHHHHHHHhCcCCC-HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC-C----HHHHH
Q 019340 68 VLNKIAASFTLPQLRAASLVCKSWNDALRPLRE-AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG-S----TLAMV 141 (342)
Q Consensus 68 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~-~----~~a~~ 141 (342)
....+...+..++...+...+..+.+.-+..+. ..+.+.+|.++.. .+++++|+..|+.++... + +.+.+
T Consensus 14 ~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~----~g~~~~A~~~l~~~~~~~~d~~l~~~a~l 89 (145)
T PF09976_consen 14 LYEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYE----QGDYDEAKAALEKALANAPDPELKPLARL 89 (145)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhhCCCHHHHHHHHH
Confidence 344455556677777777777777776655433 3677778888777 578888888888888753 2 24667
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHhC-CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHH
Q 019340 142 DAGLMYWEMDKKEAAISLYRQAAVL-GDPAGQFNLGISYLQAQPANAEEAVKLLYQAS 198 (342)
Q Consensus 142 ~lg~~~~~~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~ 198 (342)
.|+.++...|++++|+..++..... -.+.+...+|.+|. ..|+.++|+..|++++
T Consensus 90 ~LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~--~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 90 RLARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYL--AQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHH--HCCCHHHHHHHHHHhC
Confidence 7888888888888888888664332 34567777888888 7888888888888763
No 127
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.51 E-value=1.5e-06 Score=62.22 Aligned_cols=72 Identities=24% Similarity=0.415 Sum_probs=30.6
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHh
Q 019340 141 VDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLALCLH 214 (342)
Q Consensus 141 ~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~ 214 (342)
+.+|.++...|++++|+.+++++++. .++.+++.+|.++. ..+++++|+.+|++++.. .+..++..+|.++.
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYY--KLGKYEEALEDYEKALELDPDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHH
Confidence 34444444444444444444444432 22334444444444 334444444444444432 12334444444443
No 128
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.51 E-value=4.2e-06 Score=68.33 Aligned_cols=94 Identities=17% Similarity=0.162 Sum_probs=73.9
Q ss_pred CCHHHHHHHHHHHHhC----CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--C---CHHHHHHHHHHHHcCCccCHHH
Q 019340 119 KNLDKALDSFLKGAAR----GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--G---DPAGQFNLGISYLQAQPANAEE 189 (342)
Q Consensus 119 ~~~~~A~~~~~~A~~~----~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~---~~~a~~~Lg~~~~~g~~~~~~~ 189 (342)
+++..+...+..-++. ....+++.+|.++...|++++|+.+|++++.. + .+.+++++|.+|. ..+++++
T Consensus 13 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~--~~g~~~e 90 (168)
T CHL00033 13 KTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHT--SNGEHTK 90 (168)
T ss_pred cccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHH--HcCCHHH
Confidence 3444555555443322 24567789999999999999999999999865 3 2458999999999 8999999
Q ss_pred HHHHHHHHHHc--CCHHHHHHHHHHHh
Q 019340 190 AVKLLYQASIA--GHVRAQYQLALCLH 214 (342)
Q Consensus 190 A~~~~~~a~~~--~~~~a~~~lg~~~~ 214 (342)
|+.+|++++.. ....++.++|.++.
T Consensus 91 A~~~~~~Al~~~~~~~~~~~~la~i~~ 117 (168)
T CHL00033 91 ALEYYFQALERNPFLPQALNNMAVICH 117 (168)
T ss_pred HHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence 99999998874 56788889998886
No 129
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.50 E-value=1.7e-06 Score=61.99 Aligned_cols=92 Identities=25% Similarity=0.369 Sum_probs=79.9
Q ss_pred HHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHH
Q 019340 103 VLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGIS 178 (342)
Q Consensus 103 a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~ 178 (342)
+++.+|.++.. .+++++|+.+|+++++.. +..+++.+|.++...+++++|+.+|++++.. .++.+++.+|.+
T Consensus 2 ~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 77 (100)
T cd00189 2 ALLNLGNLYYK----LGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLA 77 (100)
T ss_pred HHHHHHHHHHH----HhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHH
Confidence 46778888887 589999999999998864 5678899999999999999999999999875 566789999999
Q ss_pred HHcCCccCHHHHHHHHHHHHHc
Q 019340 179 YLQAQPANAEEAVKLLYQASIA 200 (342)
Q Consensus 179 ~~~g~~~~~~~A~~~~~~a~~~ 200 (342)
+. ..+++++|..++.++++.
T Consensus 78 ~~--~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 78 YY--KLGKYEEALEAYEKALEL 97 (100)
T ss_pred HH--HHHhHHHHHHHHHHHHcc
Confidence 99 888999999999988754
No 130
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.50 E-value=5.1e-07 Score=64.60 Aligned_cols=77 Identities=23% Similarity=0.276 Sum_probs=46.3
Q ss_pred CCHHHHHHHHHHHHhCC----CHHHHHHHHHHHhcCCCHHHHHHHHHHH-HhCCCHHHHHHHHHHHHcCCccCHHHHHHH
Q 019340 119 KNLDKALDSFLKGAARG----STLAMVDAGLMYWEMDKKEAAISLYRQA-AVLGDPAGQFNLGISYLQAQPANAEEAVKL 193 (342)
Q Consensus 119 ~~~~~A~~~~~~A~~~~----~~~a~~~lg~~~~~~~~~~~A~~~~~~a-~~~~~~~a~~~Lg~~~~~g~~~~~~~A~~~ 193 (342)
+++++|+.+|++.++.. +...++.+|.+|...|++++|+.++++. ....++...+.+|.++. ..+++++|+..
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~--~l~~y~eAi~~ 80 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLKLDPSNPDIHYLLARCLL--KLGKYEEAIKA 80 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHH--HTT-HHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHH--HhCCHHHHHHH
Confidence 56667777777766642 2344555677777777777777776661 12244566666666666 66667777666
Q ss_pred HHHH
Q 019340 194 LYQA 197 (342)
Q Consensus 194 ~~~a 197 (342)
|+++
T Consensus 81 l~~~ 84 (84)
T PF12895_consen 81 LEKA 84 (84)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 6653
No 131
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.49 E-value=5.8e-05 Score=78.11 Aligned_cols=247 Identities=11% Similarity=-0.008 Sum_probs=128.1
Q ss_pred CCChhHHhhHHHHHHHHHHhCcCC-------CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC---CC----HHHHH
Q 019340 76 FTLPQLRAASLVCKSWNDALRPLR-------EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR---GS----TLAMV 141 (342)
Q Consensus 76 ~~~~~~~~a~~~~~~~~~~~~~~~-------~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~---~~----~~a~~ 141 (342)
+..+++.++...+..........+ .......+|.++.. .+++++|..+++++++. ++ ..+..
T Consensus 420 ~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~ 495 (903)
T PRK04841 420 QSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAIN----DGDPEEAERLAELALAELPLTWYYSRIVATS 495 (903)
T ss_pred HHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHh----CCCHHHHHHHHHHHHhcCCCccHHHHHHHHH
Confidence 344555555554444433322211 12334445555555 46777777777777652 11 12445
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHhC----CC----HHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc----CC------H
Q 019340 142 DAGLMYWEMDKKEAAISLYRQAAVL----GD----PAGQFNLGISYLQAQPANAEEAVKLLYQASIA----GH------V 203 (342)
Q Consensus 142 ~lg~~~~~~~~~~~A~~~~~~a~~~----~~----~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~----~~------~ 203 (342)
.+|.++...|++++|..++++++.. ++ ..+..++|.++. ..|+++.|..+++++++. +. .
T Consensus 496 ~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~--~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~ 573 (903)
T PRK04841 496 VLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF--AQGFLQAAYETQEKAFQLIEEQHLEQLPMHE 573 (903)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHHHHHHhccccccHHH
Confidence 6677777777777777777776632 22 234556677766 667777777777776542 10 1
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC----C---CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc----
Q 019340 204 RAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG----G---YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC---- 272 (342)
Q Consensus 204 ~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~----~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~---- 272 (342)
..+..+|.++.. .+++++|..++.+++.. + ...++..+|.++.. .| ++.+|..++..+...
T Consensus 574 ~~~~~la~~~~~----~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~-~G---~~~~A~~~l~~a~~~~~~~ 645 (903)
T PRK04841 574 FLLRIRAQLLWE----WARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLA-RG---DLDNARRYLNRLENLLGNG 645 (903)
T ss_pred HHHHHHHHHHHH----hcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHH-cC---CHHHHHHHHHHHHHHHhcc
Confidence 223455655554 45677777777776553 1 13344455666543 23 777777777776442
Q ss_pred CC-HHHHH---H-HHHHhhhcCCHHHHHHHHHHHHHcCcHHH----HHHHHHHHhhcChhcHHHHHHHHHhhh
Q 019340 273 GH-GKAQL---E-HGLGLFTEGEMMKAVVYLELATRAGETAA----DHVKNVILQQLSATSRDRAMLVVDSWR 336 (342)
Q Consensus 273 ~~-~~a~~---~-Lg~~~~~~~~~~~A~~~~~~a~~~~~~~a----~~~~~~~~~~~~~~~~~~a~~~~~~~~ 336 (342)
+. ..... . ....+...|+.++|..++........... .............++.++|...+.+..
T Consensus 646 ~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al 718 (903)
T PRK04841 646 RYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELN 718 (903)
T ss_pred cccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 11 11110 0 11223446677777777655443211110 011222233334455666666555543
No 132
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.47 E-value=6.5e-05 Score=65.04 Aligned_cols=172 Identities=10% Similarity=0.012 Sum_probs=104.5
Q ss_pred CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC--CH---HHHHHHHHHHhcCCCHHHHHHHHHHHHhC-----CCH
Q 019340 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--ST---LAMVDAGLMYWEMDKKEAAISLYRQAAVL-----GDP 169 (342)
Q Consensus 100 ~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~---~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-----~~~ 169 (342)
.+...|..|..+.. .+++++|+..|++..... .+ .+.+.+|.+|...+++++|+.+|++.++. .-+
T Consensus 31 ~~~~~Y~~A~~~~~----~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~ 106 (243)
T PRK10866 31 PPSEIYATAQQKLQ----DGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNID 106 (243)
T ss_pred CHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchH
Confidence 44555666666666 467777777777776642 22 34477777777777777777777777754 235
Q ss_pred HHHHHHHHHHHc-C---------------CccCHHHHHHHHHHHHHc--C---CHHHHHHHHHHHhcCCCCCCCHHHHHH
Q 019340 170 AGQFNLGISYLQ-A---------------QPANAEEAVKLLYQASIA--G---HVRAQYQLALCLHRGRGVDFNLQEAAR 228 (342)
Q Consensus 170 ~a~~~Lg~~~~~-g---------------~~~~~~~A~~~~~~a~~~--~---~~~a~~~lg~~~~~g~~~~~~~~~A~~ 228 (342)
.+++.+|.++.. + +.....+|+..|++.++. + .++|...|..+...
T Consensus 107 ~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~------------- 173 (243)
T PRK10866 107 YVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDR------------- 173 (243)
T ss_pred HHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHH-------------
Confidence 677777766421 0 111134566666666653 2 13333333333221
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc-----CCHHHHHHHHHHhhhcCCHHHHHHHHHHH
Q 019340 229 WYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC-----GHGKAQLEHGLGLFTEGEMMKAVVYLELA 301 (342)
Q Consensus 229 ~~~~A~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~-----~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a 301 (342)
-+.-.+.+|..|... | .+.-|+.-++..++. ...++++.++..|...|..++|..+....
T Consensus 174 ---------la~~e~~ia~~Y~~~-~---~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 174 ---------LAKYELSVAEYYTKR-G---AYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred ---------HHHHHHHHHHHHHHc-C---chHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 123344666767552 2 777788888888775 22577788888888888888887776554
No 133
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.46 E-value=7.4e-06 Score=62.41 Aligned_cols=92 Identities=26% Similarity=0.261 Sum_probs=70.8
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHhCCC-----HHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--C---CHHHHH
Q 019340 138 LAMVDAGLMYWEMDKKEAAISLYRQAAVLGD-----PAGQFNLGISYLQAQPANAEEAVKLLYQASIA--G---HVRAQY 207 (342)
Q Consensus 138 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~-----~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~---~~~a~~ 207 (342)
.+++++|.++...|+.++|+.+|+++++.+- ..++..+|..+. ..|++++|+..+++++.. + +.....
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr--~LG~~deA~~~L~~~~~~~p~~~~~~~l~~ 79 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLR--NLGRYDEALALLEEALEEFPDDELNAALRV 79 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHHCCCccccHHHHH
Confidence 4678888888888999999999999887632 457788888888 888999999999887763 3 455666
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHHH
Q 019340 208 QLALCLHRGRGVDFNLQEAARWYLRAAE 235 (342)
Q Consensus 208 ~lg~~~~~g~~~~~~~~~A~~~~~~A~~ 235 (342)
.++.++.. .++.++|+.++..++.
T Consensus 80 f~Al~L~~----~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 80 FLALALYN----LGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHHH----CCCHHHHHHHHHHHHH
Confidence 67777665 5677888888777653
No 134
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.43 E-value=1.1e-05 Score=77.36 Aligned_cols=131 Identities=18% Similarity=0.042 Sum_probs=70.7
Q ss_pred CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcC--------CCHHHHHHHHHHHHhC--
Q 019340 99 REAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEM--------DKKEAAISLYRQAAVL-- 166 (342)
Q Consensus 99 ~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~--------~~~~~A~~~~~~a~~~-- 166 (342)
.++..+|.-|.-|... +...+..+|+.+|++|++. +++.++-.++.+|... .+..++....+++...
T Consensus 337 ~~Ay~~~lrg~~~~~~-~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~ 415 (517)
T PRK10153 337 GAALTLFYQAHHYLNS-GDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPE 415 (517)
T ss_pred HHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhccc
Confidence 3455666666655542 3345566777777777775 3555665555555332 1233444444443321
Q ss_pred --CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHcC-CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC
Q 019340 167 --GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIAG-HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG 236 (342)
Q Consensus 167 --~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~~-~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~ 236 (342)
.++.++.-+|.++. ..+++++|...|+++++.+ +..++..+|.++.. .++.++|+.+|++|+..
T Consensus 416 ~~~~~~~~~ala~~~~--~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~----~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 416 LNVLPRIYEILAVQAL--VKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYEL----KGDNRLAADAYSTAFNL 482 (517)
T ss_pred CcCChHHHHHHHHHHH--hcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhc
Confidence 33455555555555 4556666666666665543 34555555665554 44556666666666554
No 135
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.41 E-value=1.3e-06 Score=62.54 Aligned_cols=78 Identities=29% Similarity=0.347 Sum_probs=59.3
Q ss_pred CCCHHHHHHHHHHHHhCC----CHHHHHHHHHHHHcCCccCHHHHHHHHHHH-HHcCCHHHHHHHHHHHhcCCCCCCCHH
Q 019340 150 MDKKEAAISLYRQAAVLG----DPAGQFNLGISYLQAQPANAEEAVKLLYQA-SIAGHVRAQYQLALCLHRGRGVDFNLQ 224 (342)
Q Consensus 150 ~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a-~~~~~~~a~~~lg~~~~~g~~~~~~~~ 224 (342)
.|++++|+.+|+++++.. +...++.+|.+|+ ..+++++|+.++++. ....++...+.+|.|+.. .++++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~--~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~----l~~y~ 75 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYF--QQGKYEEAIELLQKLKLDPSNPDIHYLLARCLLK----LGKYE 75 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHH--HTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHHH----TT-HH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHH--HCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----hCCHH
Confidence 478889999999987652 3456777899998 888999999999872 223567888888888887 77888
Q ss_pred HHHHHHHHH
Q 019340 225 EAARWYLRA 233 (342)
Q Consensus 225 ~A~~~~~~A 233 (342)
+|+..|++|
T Consensus 76 eAi~~l~~~ 84 (84)
T PF12895_consen 76 EAIKALEKA 84 (84)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhcC
Confidence 888888775
No 136
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.41 E-value=6.3e-05 Score=71.81 Aligned_cols=229 Identities=13% Similarity=0.063 Sum_probs=152.1
Q ss_pred CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCC--HHHHHHH
Q 019340 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGD--PAGQFNL 175 (342)
Q Consensus 100 ~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~--~~a~~~L 175 (342)
+.+.+.-...++.. .|++++|++++...... +....+-..|.++...|++++|...|+..++.+. ..-+..|
T Consensus 3 ~SE~lLY~~~il~e----~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L 78 (517)
T PF12569_consen 3 HSELLLYKNSILEE----AGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGL 78 (517)
T ss_pred HHHHHHHHHHHHHH----CCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence 34445555666666 38999999999886664 4566677899999999999999999999998754 4444444
Q ss_pred HHHHHc--C-CccCHHHHHHHHHHHHHcC-CHHHHHHHHHHHhcCCCCCCCH-HHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 019340 176 GISYLQ--A-QPANAEEAVKLLYQASIAG-HVRAQYQLALCLHRGRGVDFNL-QEAARWYLRAAEGGYVRAMYNTSLCYS 250 (342)
Q Consensus 176 g~~~~~--g-~~~~~~~A~~~~~~a~~~~-~~~a~~~lg~~~~~g~~~~~~~-~~A~~~~~~A~~~~~~~a~~~lg~~y~ 250 (342)
..+... + ...+.+.-...|......- .+.+--.+...+..|. .+ ..+..++...+..|.|....+|-.+|.
T Consensus 79 ~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~----~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~ 154 (517)
T PF12569_consen 79 EEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGD----EFKERLDEYLRPQLRKGVPSLFSNLKPLYK 154 (517)
T ss_pred HHHHhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHH----HHHHHHHHHHHHHHhcCCchHHHHHHHHHc
Confidence 444421 1 1235677777777654432 2233334544444432 23 456677788888899999999999885
Q ss_pred cCCCCcccHHHHHHHHHHHHHc---------------CCH----HHHHHHHHHhhhcCCHHHHHHHHHHHHHcCcHHHHH
Q 019340 251 FGEGLPLSHRQARKWMKRAADC---------------GHG----KAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADH 311 (342)
Q Consensus 251 ~g~g~~~~~~~A~~~~~~a~~~---------------~~~----~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~ 311 (342)
.. ....-....+..-... .++ .+++.|++.|...|++++|+.+..+|++..|.-...
T Consensus 155 d~----~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~el 230 (517)
T PF12569_consen 155 DP----EKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVEL 230 (517)
T ss_pred Ch----hHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHH
Confidence 21 1111111222221110 112 355889999999999999999999999998765555
Q ss_pred HHHHHHhhcChhcHHHHHHHHHhhhcCCC
Q 019340 312 VKNVILQQLSATSRDRAMLVVDSWRAMPS 340 (342)
Q Consensus 312 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 340 (342)
++......-..|+..+|.+.....+.+.+
T Consensus 231 y~~KarilKh~G~~~~Aa~~~~~Ar~LD~ 259 (517)
T PF12569_consen 231 YMTKARILKHAGDLKEAAEAMDEARELDL 259 (517)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhCCh
Confidence 55444444555999999998888877664
No 137
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.40 E-value=0.00049 Score=61.71 Aligned_cols=213 Identities=14% Similarity=0.051 Sum_probs=146.8
Q ss_pred cCCHHHHHHHHHHHHhCC-CHH-HHHHHHHHHhcCCCHHHHHHHHHHHHhC-CCHHHHHHHH--HHHHcCCccCHHHHHH
Q 019340 118 RKNLDKALDSFLKGAARG-STL-AMVDAGLMYWEMDKKEAAISLYRQAAVL-GDPAGQFNLG--ISYLQAQPANAEEAVK 192 (342)
Q Consensus 118 ~~~~~~A~~~~~~A~~~~-~~~-a~~~lg~~~~~~~~~~~A~~~~~~a~~~-~~~~a~~~Lg--~~~~~g~~~~~~~A~~ 192 (342)
.||+.+|.....++++.+ .+. ++..-+..-...||.+.|-.|+.++.++ +++.-...|. .+.. ..+|+.-|..
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll--~~~d~~aA~~ 174 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLL--NRRDYPAARE 174 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHH--hCCCchhHHH
Confidence 589999999999999986 333 3445556777789999999999999998 6666555554 4455 7889999999
Q ss_pred HHHHHHHc--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCC---CHHHH-----HHHHHHHHcCCCCcccHHHH
Q 019340 193 LLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG---YVRAM-----YNTSLCYSFGEGLPLSHRQA 262 (342)
Q Consensus 193 ~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~~---~~~a~-----~~lg~~y~~g~g~~~~~~~A 262 (342)
-..++.++ .++++..-.-.+|.. .+++.....+..+..+.+ +.... ...|.+-... -..+.+.=
T Consensus 175 ~v~~ll~~~pr~~~vlrLa~r~y~~----~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~--~~~~~~gL 248 (400)
T COG3071 175 NVDQLLEMTPRHPEVLRLALRAYIR----LGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQAR--DDNGSEGL 248 (400)
T ss_pred HHHHHHHhCcCChHHHHHHHHHHHH----hccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHh--ccccchHH
Confidence 99998886 489999988999987 678888888777766543 32221 1122222111 11223333
Q ss_pred HHHHHHHHH--cCCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCcHHHHHHHHHHHhhcChhcHHHHHHHHHhhhcCCC
Q 019340 263 RKWMKRAAD--CGHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPS 340 (342)
Q Consensus 263 ~~~~~~a~~--~~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 340 (342)
..|++.--. ..+++....++.-+...|+.++|.++.+.+++.+.+.- +-...-.+..++...-++.++.|.+.+|
T Consensus 249 ~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~~~~~~l~~~d~~~l~k~~e~~l~~h~ 325 (400)
T COG3071 249 KTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LCRLIPRLRPGDPEPLIKAAEKWLKQHP 325 (400)
T ss_pred HHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HHHHHhhcCCCCchHHHHHHHHHHHhCC
Confidence 445555433 25566667777777788888888888888887653332 3344555667777777777788877776
Q ss_pred C
Q 019340 341 L 341 (342)
Q Consensus 341 ~ 341 (342)
.
T Consensus 326 ~ 326 (400)
T COG3071 326 E 326 (400)
T ss_pred C
Confidence 5
No 138
>PRK11906 transcriptional regulator; Provisional
Probab=98.39 E-value=4.9e-05 Score=69.98 Aligned_cols=159 Identities=14% Similarity=0.020 Sum_probs=105.1
Q ss_pred CHH--HHHHHHHHHHcCCCCcCCHHHHHHHHHHHH---hC--CCHHHHHHHHHHHhcC---------CCHHHHHHHHHHH
Q 019340 100 EAM--VLLRWGKRFKHGRGVRKNLDKALDSFLKGA---AR--GSTLAMVDAGLMYWEM---------DKKEAAISLYRQA 163 (342)
Q Consensus 100 ~a~--a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~---~~--~~~~a~~~lg~~~~~~---------~~~~~A~~~~~~a 163 (342)
+++ ..|..|..... .+.+.+.+.|+.+|.+|+ +. +.+.++..++.+|+.. .+..+|...-++|
T Consensus 252 ~a~~~d~ylrg~~~~~-~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rA 330 (458)
T PRK11906 252 NHYLSDEMLAGKKELY-DFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYV 330 (458)
T ss_pred cchhhHHHHHHHHHhh-ccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 555 66777776655 355667888888899988 44 3577777777777653 3566777777777
Q ss_pred HhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHH--cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCCH
Q 019340 164 AVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASI--AGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYV 239 (342)
Q Consensus 164 ~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~~~~ 239 (342)
++. +|+.|+..+|.+.. -.++++.|+.+|++|.. ++.+.+++..|.+... .++.++|++++++|+.....
T Consensus 331 veld~~Da~a~~~~g~~~~--~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~----~G~~~~a~~~i~~alrLsP~ 404 (458)
T PRK11906 331 SDITTVDGKILAIMGLITG--LSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFH----NEKIEEARICIDKSLQLEPR 404 (458)
T ss_pred HhcCCCCHHHHHHHHHHHH--hhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHH----cCCHHHHHHHHHHHhccCch
Confidence 765 67777777887766 55568888888888765 3567777777777665 55677777777777776543
Q ss_pred HHH---HHHHH-HHHcCCCCcccHHHHHHHHHHHH
Q 019340 240 RAM---YNTSL-CYSFGEGLPLSHRQARKWMKRAA 270 (342)
Q Consensus 240 ~a~---~~lg~-~y~~g~g~~~~~~~A~~~~~~a~ 270 (342)
..- ..+-. +|. +.-.+.|+.+|-+-.
T Consensus 405 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~ 434 (458)
T PRK11906 405 RRKAVVIKECVDMYV-----PNPLKNNIKLYYKET 434 (458)
T ss_pred hhHHHHHHHHHHHHc-----CCchhhhHHHHhhcc
Confidence 322 22222 331 335566666655443
No 139
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.35 E-value=0.00016 Score=67.84 Aligned_cols=222 Identities=10% Similarity=0.025 Sum_probs=153.3
Q ss_pred HHHHHHHHhhCCChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHH--hCCCHHHHHHH
Q 019340 66 FDVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGA--ARGSTLAMVDA 143 (342)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~--~~~~~~a~~~l 143 (342)
.+.++.+......+++.+|...+.+.+...++ +..+.+.-=.+..+ ...|++|+.+.++-- ..++. ..+.-
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pd--d~~a~~cKvValIq----~~ky~~ALk~ikk~~~~~~~~~-~~fEK 85 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSIVPD--DEDAIRCKVVALIQ----LDKYEDALKLIKKNGALLVINS-FFFEK 85 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhcCCC--cHhhHhhhHhhhhh----hhHHHHHHHHHHhcchhhhcch-hhHHH
Confidence 56777788888999999999999888888766 55555544444444 367889986666532 22222 22788
Q ss_pred HHHHhcCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHcC--CHHHHHHHHHHHhcCCCCCC
Q 019340 144 GLMYWEMDKKEAAISLYRQAAVLGDPAGQFNLGISYLQAQPANAEEAVKLLYQASIAG--HVRAQYQLALCLHRGRGVDF 221 (342)
Q Consensus 144 g~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~ 221 (342)
+.|+++.+..++|++.+. .++..++.....-+.+++ ..+++++|+..|+..++.+ +.+........-..
T Consensus 86 AYc~Yrlnk~Dealk~~~-~~~~~~~~ll~L~AQvlY--rl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~------ 156 (652)
T KOG2376|consen 86 AYCEYRLNKLDEALKTLK-GLDRLDDKLLELRAQVLY--RLERYDEALDIYQHLAKNNSDDQDEERRANLLAVA------ 156 (652)
T ss_pred HHHHHHcccHHHHHHHHh-cccccchHHHHHHHHHHH--HHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH------
Confidence 999999999999999999 777777777777788888 7899999999999998764 23333222221110
Q ss_pred CHHHHHHHHHHHHH---CCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc-------CC----------HHHHHHH
Q 019340 222 NLQEAARWYLRAAE---GGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC-------GH----------GKAQLEH 281 (342)
Q Consensus 222 ~~~~A~~~~~~A~~---~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~-------~~----------~~a~~~L 281 (342)
...... +.+.+. .+.-+-+||.+-++.. .| ++.+|++.+++|.+. ++ ......|
T Consensus 157 -a~l~~~-~~q~v~~v~e~syel~yN~Ac~~i~-~g---ky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQl 230 (652)
T KOG2376|consen 157 -AALQVQ-LLQSVPEVPEDSYELLYNTACILIE-NG---KYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQL 230 (652)
T ss_pred -HhhhHH-HHHhccCCCcchHHHHHHHHHHHHh-cc---cHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHH
Confidence 000111 122222 2456678888888843 44 999999999999331 11 1244788
Q ss_pred HHHhhhcCCHHHHHHHHHHHHHcCcHHH
Q 019340 282 GLGLFTEGEMMKAVVYLELATRAGETAA 309 (342)
Q Consensus 282 g~~~~~~~~~~~A~~~~~~a~~~~~~~a 309 (342)
+.++...|+.++|...|..-+...+.|.
T Consensus 231 ayVlQ~~Gqt~ea~~iy~~~i~~~~~D~ 258 (652)
T KOG2376|consen 231 AYVLQLQGQTAEASSIYVDIIKRNPADE 258 (652)
T ss_pred HHHHHHhcchHHHHHHHHHHHHhcCCCc
Confidence 9999999999999999998887765544
No 140
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.34 E-value=5.9e-05 Score=67.79 Aligned_cols=156 Identities=17% Similarity=0.063 Sum_probs=123.8
Q ss_pred HHHHHhhCCChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCCCH-----------
Q 019340 69 LNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGST----------- 137 (342)
Q Consensus 69 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~----------- 137 (342)
+-++.-+...++..+|+.+....++.-+. ++.+++.-|.++.. ..+.++|+.+|++++.++..
T Consensus 173 ~lka~cl~~~~~~~~a~~ea~~ilkld~~--n~~al~vrg~~~yy----~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~ 246 (486)
T KOG0550|consen 173 LLKAECLAFLGDYDEAQSEAIDILKLDAT--NAEALYVRGLCLYY----NDNADKAINHFQQALRLDPDHQKSKSASMMP 246 (486)
T ss_pred HhhhhhhhhcccchhHHHHHHHHHhcccc--hhHHHHhccccccc----ccchHHHHHHHhhhhccChhhhhHHhHhhhH
Confidence 33344445667888888887777777555 78888888988877 58999999999999987522
Q ss_pred ---HHHHHHHHHHhcCCCHHHHHHHHHHHHhCC------CHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHcC--CHHHH
Q 019340 138 ---LAMVDAGLMYWEMDKKEAAISLYRQAAVLG------DPAGQFNLGISYLQAQPANAEEAVKLLYQASIAG--HVRAQ 206 (342)
Q Consensus 138 ---~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~------~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~~--~~~a~ 206 (342)
..+..-|.-.+..|++.+|.+.|..++..+ ++..+.+.+.+.. ..++..+|+.-...++..+ ...++
T Consensus 247 k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~--rLgrl~eaisdc~~Al~iD~syikal 324 (486)
T KOG0550|consen 247 KKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNI--RLGRLREAISDCNEALKIDSSYIKAL 324 (486)
T ss_pred HHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhc--ccCCchhhhhhhhhhhhcCHHHHHHH
Confidence 234456677777899999999999998652 3445666666666 8999999999999998875 67899
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHHHHC
Q 019340 207 YQLALCLHRGRGVDFNLQEAARWYLRAAEG 236 (342)
Q Consensus 207 ~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~ 236 (342)
..-|.|+.. ..++++|++.|++|++.
T Consensus 325 l~ra~c~l~----le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 325 LRRANCHLA----LEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHhh
Confidence 999999987 77899999999999876
No 141
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.34 E-value=5.6e-05 Score=62.98 Aligned_cols=194 Identities=19% Similarity=0.175 Sum_probs=122.7
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC----C----CHHHHHHHHHHHHcCCccCHHHH
Q 019340 119 KNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL----G----DPAGQFNLGISYLQAQPANAEEA 190 (342)
Q Consensus 119 ~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----~----~~~a~~~Lg~~~~~g~~~~~~~A 190 (342)
..+++|.++|.+|+. +|...+++..|-..|.++++. + -...+...+.+|. ..++.+|
T Consensus 28 ~k~eeAadl~~~Aan------------~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cyk---k~~~~eA 92 (288)
T KOG1586|consen 28 NKYEEAAELYERAAN------------MYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYK---KVDPEEA 92 (288)
T ss_pred cchHHHHHHHHHHHH------------HHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhh---ccChHHH
Confidence 589999999999765 333344555555555555432 1 2445556667776 4599999
Q ss_pred HHHHHHHHHc----CC----HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--C-CH-----HHHHHHHHHHHcCCC
Q 019340 191 VKLLYQASIA----GH----VRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--G-YV-----RAMYNTSLCYSFGEG 254 (342)
Q Consensus 191 ~~~~~~a~~~----~~----~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~--~-~~-----~a~~~lg~~y~~g~g 254 (342)
+.+++++++. |. +.-+..||.+|+. -..|+++|+.+|+.|++- + .. .++...+..- -
T Consensus 93 v~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEs---dl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~ya-a--- 165 (288)
T KOG1586|consen 93 VNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYES---DLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYA-A--- 165 (288)
T ss_pred HHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhh---hHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHH-H---
Confidence 9999999873 42 2335578899975 147899999999999873 1 11 1222222222 1
Q ss_pred CcccHHHHHHHHHHHHHc--CCH-------HHHHHHHHHhhhcCCHHHHHHHHHHHHHcCcHHHHH----HHHHHHhhcC
Q 019340 255 LPLSHRQARKWMKRAADC--GHG-------KAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADH----VKNVILQQLS 321 (342)
Q Consensus 255 ~~~~~~~A~~~~~~a~~~--~~~-------~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~----~~~~~~~~~~ 321 (342)
...+|.+|+..|++.+.. ++. .-.+.-|.+++...|.-.+...+++-.+..|..+.. .+..+..-..
T Consensus 166 ~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsREckflk~L~~aie 245 (288)
T KOG1586|consen 166 QLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSRECKFLKDLLDAIE 245 (288)
T ss_pred HHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHh
Confidence 133899999999988763 332 233667777777888888888888888888765433 3333333344
Q ss_pred hhcHHHHHHHHHh
Q 019340 322 ATSRDRAMLVVDS 334 (342)
Q Consensus 322 ~~~~~~a~~~~~~ 334 (342)
..+.+.--+..++
T Consensus 246 E~d~e~fte~vke 258 (288)
T KOG1586|consen 246 EQDIEKFTEVVKE 258 (288)
T ss_pred hhhHHHHHHHHHh
Confidence 4444444334433
No 142
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.34 E-value=2.4e-05 Score=69.20 Aligned_cols=225 Identities=15% Similarity=0.073 Sum_probs=153.2
Q ss_pred cHHHHHHHHhhCCChhHHhhHHHHHHHHHHhCcCCCHHHHHH-HHHHHHcCCCCcCCHHHHHHH----HHHHHhCCC---
Q 019340 65 PFDVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLR-WGKRFKHGRGVRKNLDKALDS----FLKGAARGS--- 136 (342)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~-lg~~y~~g~g~~~~~~~A~~~----~~~A~~~~~--- 136 (342)
++..+.+...+|..++..++. ..|-+......+.+.-+. ||-.-..+ -..+.+++++.+ ..-+.+..+
T Consensus 6 ~k~q~~~g~~Ly~s~~~~~al---~~w~~~L~~l~~~~~Rf~~lG~l~~a~-s~~g~y~~mL~~a~sqi~~a~~~~ds~~ 81 (518)
T KOG1941|consen 6 TKKQIEKGLQLYQSNQTEKAL---QVWTKVLEKLSDLMGRFRVLGCLVTAH-SEMGRYKEMLKFAVSQIDTARELEDSDF 81 (518)
T ss_pred hHHHHHHHHhHhcCchHHHHH---HHHHHHHHHHHHHHHHHHHhccchhhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556778888899999999987 556666555555543321 22211111 002334443322 222333333
Q ss_pred -HHHHHHHHHHHhcCCCHHHHHHHHHHHHhC-------CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc----CC--
Q 019340 137 -TLAMVDAGLMYWEMDKKEAAISLYRQAAVL-------GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA----GH-- 202 (342)
Q Consensus 137 -~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-------~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~----~~-- 202 (342)
-++..+|++-+...-++.+++.+-+-.+.. ....+...+|.++. ..+.+++++++|+++..- ++
T Consensus 82 ~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahl--gls~fq~~Lesfe~A~~~A~~~~D~~ 159 (518)
T KOG1941|consen 82 LLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHL--GLSVFQKALESFEKALRYAHNNDDAM 159 (518)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhh--hHHHHHHHHHHHHHHHHHhhccCCce
Confidence 357788999998888999999887776644 12356666888888 788999999999998763 23
Q ss_pred --HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC------CCH------HHHHHHHHHHHcCCCCcccHHHHHHHHHH
Q 019340 203 --VRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG------GYV------RAMYNTSLCYSFGEGLPLSHRQARKWMKR 268 (342)
Q Consensus 203 --~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~------~~~------~a~~~lg~~y~~g~g~~~~~~~A~~~~~~ 268 (342)
-.++..||.+|.. .+|++||.-+..+|++. ++. .+.|.|+..+. -.| ....|.++-++
T Consensus 160 LElqvcv~Lgslf~~----l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR-~~G---~LgdA~e~C~E 231 (518)
T KOG1941|consen 160 LELQVCVSLGSLFAQ----LKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALR-LLG---RLGDAMECCEE 231 (518)
T ss_pred eeeehhhhHHHHHHH----HHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHH-Hhc---ccccHHHHHHH
Confidence 3567889999877 88999999999999874 332 35667777773 344 45555555555
Q ss_pred H----HHcCC----HHHHHHHHHHhhhcCCHHHHHHHHHHHHH
Q 019340 269 A----ADCGH----GKAQLEHGLGLFTEGEMMKAVVYLELATR 303 (342)
Q Consensus 269 a----~~~~~----~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~ 303 (342)
| +..|+ +....-+|.+|...|+.+.|+.-|+.|..
T Consensus 232 a~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 232 AMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHH
Confidence 5 44566 44567899999999999999999999854
No 143
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.33 E-value=2.1e-06 Score=58.01 Aligned_cols=56 Identities=20% Similarity=0.230 Sum_probs=32.6
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHH
Q 019340 142 DAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASI 199 (342)
Q Consensus 142 ~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~ 199 (342)
.+|..+...|++++|+..|+++++. +++++++.+|.++. ..+++++|+.+|+++++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~--~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILY--QQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHH--HTT-HHHHHHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH--HcCCHHHHHHHHHHHHH
Confidence 4555566666666666666666544 45566666666666 55666666666666554
No 144
>PRK11906 transcriptional regulator; Provisional
Probab=98.33 E-value=5.7e-05 Score=69.55 Aligned_cols=157 Identities=10% Similarity=0.031 Sum_probs=117.2
Q ss_pred HHHHHHHHHc-CCccCHHHHHHHHHHHH---H--cCCHHHHHHHHHHHhcC----CC-CCCCHHHHHHHHHHHHHC--CC
Q 019340 172 QFNLGISYLQ-AQPANAEEAVKLLYQAS---I--AGHVRAQYQLALCLHRG----RG-VDFNLQEAARWYLRAAEG--GY 238 (342)
Q Consensus 172 ~~~Lg~~~~~-g~~~~~~~A~~~~~~a~---~--~~~~~a~~~lg~~~~~g----~~-~~~~~~~A~~~~~~A~~~--~~ 238 (342)
.+..|...+. +.+.+.+.|+.+|.+++ + ++.+.++..++.|+..+ +. ...+..+|.+.-++|++. +|
T Consensus 258 ~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~D 337 (458)
T PRK11906 258 EMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVD 337 (458)
T ss_pred HHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCC
Confidence 3666666653 45667889999999998 3 45789999999998643 32 356788999999999987 58
Q ss_pred HHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCcHHHHH-HHHH
Q 019340 239 VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADH-VKNV 315 (342)
Q Consensus 239 ~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~-~~~~ 315 (342)
+.++..+|.+... ..+++.|..+|++|... +.+.+++..|++..-.|+.++|..+.++|+++.|-.... .+.+
T Consensus 338 a~a~~~~g~~~~~----~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~ 413 (458)
T PRK11906 338 GKILAIMGLITGL----SGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKE 413 (458)
T ss_pred HHHHHHHHHHHHh----hcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHH
Confidence 8899999997643 33799999999999886 558888999999999999999999999999998765433 2333
Q ss_pred HHhhcChhcHHHHHHHH
Q 019340 316 ILQQLSATSRDRAMLVV 332 (342)
Q Consensus 316 ~~~~~~~~~~~~a~~~~ 332 (342)
....-.....+.++.++
T Consensus 414 ~~~~~~~~~~~~~~~~~ 430 (458)
T PRK11906 414 CVDMYVPNPLKNNIKLY 430 (458)
T ss_pred HHHHHcCCchhhhHHHH
Confidence 33122234455555543
No 145
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.32 E-value=1.6e-05 Score=76.14 Aligned_cols=139 Identities=15% Similarity=-0.009 Sum_probs=102.7
Q ss_pred CCHHHH--HHHHHHHHc-CCccCHHHHHHHHHHHHH--cCCHHHHHHHHHHHhcCCCCC----CCHHHHHHHHHHHHHC-
Q 019340 167 GDPAGQ--FNLGISYLQ-AQPANAEEAVKLLYQASI--AGHVRAQYQLALCLHRGRGVD----FNLQEAARWYLRAAEG- 236 (342)
Q Consensus 167 ~~~~a~--~~Lg~~~~~-g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~----~~~~~A~~~~~~A~~~- 236 (342)
.+++|+ +.-|.-|.. +..++..+|+.+|+++++ ++++.++..++.+|....+.. .+...+.....++...
T Consensus 335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~ 414 (517)
T PRK10153 335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALP 414 (517)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcc
Confidence 454544 344555543 456678899999999887 568888888888775432222 2345666667776553
Q ss_pred ---CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcC-CHHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCcHHH
Q 019340 237 ---GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCG-HGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAA 309 (342)
Q Consensus 237 ---~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~~a 309 (342)
.++.++..+|.++.. .| ++++|...|++|++.+ +..++..+|.++...|++++|..+|++|+++++.+.
T Consensus 415 ~~~~~~~~~~ala~~~~~-~g---~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 415 ELNVLPRIYEILAVQALV-KG---KTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred cCcCChHHHHHHHHHHHh-cC---CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 356778888888753 33 9999999999999874 477889999999999999999999999999976544
No 146
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.30 E-value=9.6e-05 Score=62.27 Aligned_cols=76 Identities=22% Similarity=0.269 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC-----CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--C---CHH
Q 019340 101 AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG-----STLAMVDAGLMYWEMDKKEAAISLYRQAAVL--G---DPA 170 (342)
Q Consensus 101 a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~-----~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~---~~~ 170 (342)
+..+|..|..+.. .|++.+|+..|++..... -+.+++.+|.++...|++++|+..|++.+.. + -+.
T Consensus 5 ~~~lY~~a~~~~~----~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~ 80 (203)
T PF13525_consen 5 AEALYQKALEALQ----QGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADY 80 (203)
T ss_dssp HHHHHHHHHHHHH----CT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHH
T ss_pred HHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhh
Confidence 4445555555555 355555555555555421 2344555555555555555555555554433 1 134
Q ss_pred HHHHHHHHHH
Q 019340 171 GQFNLGISYL 180 (342)
Q Consensus 171 a~~~Lg~~~~ 180 (342)
+++.+|.++.
T Consensus 81 A~Y~~g~~~~ 90 (203)
T PF13525_consen 81 ALYMLGLSYY 90 (203)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555443
No 147
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.30 E-value=0.00041 Score=60.10 Aligned_cols=180 Identities=15% Similarity=0.011 Sum_probs=120.7
Q ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCH---HHHHHHHHHHHcCCccCHHHHHHHHHHHHHc-----CCHH
Q 019340 135 GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDP---AGQFNLGISYLQAQPANAEEAVKLLYQASIA-----GHVR 204 (342)
Q Consensus 135 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~---~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~-----~~~~ 204 (342)
.++...+..|..+...|++++|+..|++.... +.+ .+.+.||.+|+ ..+++++|+.+|++.++. ..+.
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy--~~~~y~~A~~~~e~fi~~~P~~~~~~~ 107 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYY--KNADLPLAQAAIDRFIRLNPTHPNIDY 107 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHhCcCCCchHH
Confidence 46778889999999999999999999999876 333 45699999999 899999999999999884 3578
Q ss_pred HHHHHHHHHhc-CC----------CCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHH
Q 019340 205 AQYQLALCLHR-GR----------GVDFN---LQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAA 270 (342)
Q Consensus 205 a~~~lg~~~~~-g~----------~~~~~---~~~A~~~~~~A~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~ 270 (342)
+++.+|.++.. +. ....| ..+|+..|++.++.-.-.. -..+|...+...
T Consensus 108 a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~----------------ya~~A~~rl~~l- 170 (243)
T PRK10866 108 VLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQ----------------YTTDATKRLVFL- 170 (243)
T ss_pred HHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCCh----------------hHHHHHHHHHHH-
Confidence 89999988532 11 01122 2456666666665411000 111221111111
Q ss_pred HcCCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHc-----CcHHHHHHHHHHHhhcChhcHHHHHHHHHhh
Q 019340 271 DCGHGKAQLEHGLGLFTEGEMMKAVVYLELATRA-----GETAADHVKNVILQQLSATSRDRAMLVVDSW 335 (342)
Q Consensus 271 ~~~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~-----~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~ 335 (342)
...-+.-.+.+|..|...|.+.-|+.-++..++. ..+++...+......+ +..++|...++.+
T Consensus 171 ~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~l--g~~~~a~~~~~~l 238 (243)
T PRK10866 171 KDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQL--QLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHc--CChHHHHHHHHHH
Confidence 1112344567888899999999999999999975 2355665555555444 6666676665554
No 148
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.30 E-value=1.7e-05 Score=69.21 Aligned_cols=95 Identities=11% Similarity=0.170 Sum_probs=67.9
Q ss_pred CHHHHHHHHHHH-hcCCCHHHHHHHHHHHHhC--CC---HHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--C---CHH
Q 019340 136 STLAMVDAGLMY-WEMDKKEAAISLYRQAAVL--GD---PAGQFNLGISYLQAQPANAEEAVKLLYQASIA--G---HVR 204 (342)
Q Consensus 136 ~~~a~~~lg~~~-~~~~~~~~A~~~~~~a~~~--~~---~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~---~~~ 204 (342)
+....|..+..+ ...|++++|+..|++.+.. ++ +.+++.||.+|+ ..+++++|+.+|+++++. + .++
T Consensus 141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~--~~g~~~~A~~~f~~vv~~yP~s~~~~d 218 (263)
T PRK10803 141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNY--NKGKKDDAAYYFASVVKNYPKSPKAAD 218 (263)
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHHCCCCcchhH
Confidence 345666666654 4567888888888887754 33 578888888888 777888888888887752 2 467
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC
Q 019340 205 AQYQLALCLHRGRGVDFNLQEAARWYLRAAEG 236 (342)
Q Consensus 205 a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~ 236 (342)
+++.+|.++.. .++.++|...|++.++.
T Consensus 219 Al~klg~~~~~----~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 219 AMFKVGVIMQD----KGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHHHH----cCCHHHHHHHHHHHHHH
Confidence 77777877765 56777777777777654
No 149
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.30 E-value=1.9e-05 Score=68.45 Aligned_cols=112 Identities=21% Similarity=0.168 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHc-CCccCHHHHHHHHHH
Q 019340 122 DKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQ-AQPANAEEAVKLLYQ 196 (342)
Q Consensus 122 ~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~-g~~~~~~~A~~~~~~ 196 (342)
+.-+.-++.-+.. +|++.|..||.+|...|++..|...|++|... ++++.+..+|.++++ ....+..++...|++
T Consensus 139 ~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~ 218 (287)
T COG4235 139 EALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQ 218 (287)
T ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHH
Confidence 3334444444433 47777777777777777777777777777655 667777777777664 345566777777777
Q ss_pred HHHc--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCC
Q 019340 197 ASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG 237 (342)
Q Consensus 197 a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~~ 237 (342)
++.. .+..+.+.||..++. .+++.+|+..|++.++..
T Consensus 219 al~~D~~~iral~lLA~~afe----~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 219 ALALDPANIRALSLLAFAAFE----QGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHhcCCccHHHHHHHHHHHHH----cccHHHHHHHHHHHHhcC
Confidence 7664 366777777777776 667777777777776653
No 150
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.29 E-value=2.2e-05 Score=68.09 Aligned_cols=120 Identities=13% Similarity=0.050 Sum_probs=94.9
Q ss_pred CHHHHHHHHHHHHH--cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHH
Q 019340 186 NAEEAVKLLYQASI--AGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQ 261 (342)
Q Consensus 186 ~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~ 261 (342)
+.+.-+.-++.-+. +++++.|..||.+|.. .+++..|...|.+|... ++++.+-.+|.++....| ..+..+
T Consensus 137 ~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~----~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~-~~~ta~ 211 (287)
T COG4235 137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMA----LGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAG-QQMTAK 211 (287)
T ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHH----hcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC-CcccHH
Confidence 45555555555443 5688888888888887 77888888888888876 577777777777655543 568899
Q ss_pred HHHHHHHHHHc--CCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCcHHHH
Q 019340 262 ARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAAD 310 (342)
Q Consensus 262 A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~ 310 (342)
+...|++++.. .+..+.+.||..++..|++.+|...++..++..+++..
T Consensus 212 a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 212 ARALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 99999999876 56889999999999999999999999999998765543
No 151
>PRK15331 chaperone protein SicA; Provisional
Probab=98.29 E-value=1.5e-05 Score=63.25 Aligned_cols=93 Identities=17% Similarity=0.020 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHh--CCCHHHHHHHHH
Q 019340 102 MVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAV--LGDPAGQFNLGI 177 (342)
Q Consensus 102 ~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~Lg~ 177 (342)
+..|..|.-+.+ .|++++|..+|+-.+..+ ++..++.||-++...+++++|+..|-.+.. .+||...+..|.
T Consensus 38 e~iY~~Ay~~y~----~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agq 113 (165)
T PRK15331 38 DGLYAHAYEFYN----QGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQ 113 (165)
T ss_pred HHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHH
Confidence 456666665555 478888888888877653 677788888888888888888888888764 478888888888
Q ss_pred HHHcCCccCHHHHHHHHHHHHHc
Q 019340 178 SYLQAQPANAEEAVKLLYQASIA 200 (342)
Q Consensus 178 ~~~~g~~~~~~~A~~~~~~a~~~ 200 (342)
||+ ..++..+|..+|+.+++.
T Consensus 114 C~l--~l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 114 CQL--LMRKAAKARQCFELVNER 134 (165)
T ss_pred HHH--HhCCHHHHHHHHHHHHhC
Confidence 888 888888888888888774
No 152
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.29 E-value=1.5e-05 Score=68.91 Aligned_cols=95 Identities=17% Similarity=0.212 Sum_probs=78.9
Q ss_pred cCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHH
Q 019340 118 RKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKL 193 (342)
Q Consensus 118 ~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~ 193 (342)
.++|.+|+..|.+|+++. ++..+.+-+-+|.+.|.++.|++-++.|+.. ....+|..||.+|. ..+++++|+..
T Consensus 94 ~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~--~~gk~~~A~~a 171 (304)
T KOG0553|consen 94 NKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYL--ALGKYEEAIEA 171 (304)
T ss_pred hhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHH--ccCcHHHHHHH
Confidence 478999999999999975 6777778999999999999999999998876 45788999999999 88899999999
Q ss_pred HHHHHHc--CCHHHHHHHHHHHh
Q 019340 194 LYQASIA--GHVRAQYQLALCLH 214 (342)
Q Consensus 194 ~~~a~~~--~~~~a~~~lg~~~~ 214 (342)
|+|+++. .+.....+|...-.
T Consensus 172 ykKaLeldP~Ne~~K~nL~~Ae~ 194 (304)
T KOG0553|consen 172 YKKALELDPDNESYKSNLKIAEQ 194 (304)
T ss_pred HHhhhccCCCcHHHHHHHHHHHH
Confidence 9998875 46766667765544
No 153
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.28 E-value=1.7e-05 Score=69.25 Aligned_cols=96 Identities=15% Similarity=0.116 Sum_probs=80.4
Q ss_pred CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC--C---HHHHHHHHHHHhcCCCHHHHHHHHHHHHhC-----CCH
Q 019340 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--S---TLAMVDAGLMYWEMDKKEAAISLYRQAAVL-----GDP 169 (342)
Q Consensus 100 ~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~---~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-----~~~ 169 (342)
+....|..+..+... .+++++|+..|++.+... + +.+++.+|.+|+..|++++|+..|+++++. ..+
T Consensus 141 ~e~~~Y~~A~~l~~~---~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~ 217 (263)
T PRK10803 141 DANTDYNAAIALVQD---KSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAA 217 (263)
T ss_pred CHHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchh
Confidence 346667777655221 379999999999999852 2 579999999999999999999999999964 358
Q ss_pred HHHHHHHHHHHcCCccCHHHHHHHHHHHHHc
Q 019340 170 AGQFNLGISYLQAQPANAEEAVKLLYQASIA 200 (342)
Q Consensus 170 ~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~ 200 (342)
++++.+|.++. ..+++++|+.+|+++++.
T Consensus 218 dAl~klg~~~~--~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 218 DAMFKVGVIMQ--DKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHHHH--HcCCHHHHHHHHHHHHHH
Confidence 99999999999 889999999999999874
No 154
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.26 E-value=2.1e-05 Score=67.96 Aligned_cols=105 Identities=20% Similarity=0.102 Sum_probs=86.2
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHcC--CHHHHHHHHHHHh
Q 019340 139 AMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIAG--HVRAQYQLALCLH 214 (342)
Q Consensus 139 a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~ 214 (342)
.+-.=|.-+...++|.+|+..|.+|++. .++--+.+-+-+|. ..+.++.|++-.+.++..+ +..+|..||..|.
T Consensus 83 ~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~--~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~ 160 (304)
T KOG0553|consen 83 SLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYS--KLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYL 160 (304)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHH--HhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 3445566677789999999999999987 56677778888888 8999999999999998765 7899999999998
Q ss_pred cCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHH
Q 019340 215 RGRGVDFNLQEAARWYLRAAEGG--YVRAMYNTSLCY 249 (342)
Q Consensus 215 ~g~~~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~y 249 (342)
. .+++.+|++.|+||++.+ +....-+|..+-
T Consensus 161 ~----~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae 193 (304)
T KOG0553|consen 161 A----LGKYEEAIEAYKKALELDPDNESYKSNLKIAE 193 (304)
T ss_pred c----cCcHHHHHHHHHhhhccCCCcHHHHHHHHHHH
Confidence 7 678999999999999874 455555555554
No 155
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.24 E-value=0.00024 Score=59.88 Aligned_cols=170 Identities=15% Similarity=0.094 Sum_probs=110.3
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC-----CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--C---CHHH
Q 019340 136 STLAMVDAGLMYWEMDKKEAAISLYRQAAVL-----GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA--G---HVRA 205 (342)
Q Consensus 136 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-----~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~---~~~a 205 (342)
++..++..|..+...|++.+|+..|++.... --+++.+.+|.+++ ..+++.+|+..|++-++. + .+.+
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y--~~~~y~~A~~~~~~fi~~yP~~~~~~~A 81 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYY--KQGDYEEAIAAYERFIKLYPNSPKADYA 81 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHH--HTT-HHHHHHHHHHHHHH-TT-TTHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHHCCCCcchhhH
Confidence 5678899999999999999999999999865 23689999999999 889999999999998773 3 4678
Q ss_pred HHHHHHHHhcC-------CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCCHHHH
Q 019340 206 QYQLALCLHRG-------RGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQ 278 (342)
Q Consensus 206 ~~~lg~~~~~g-------~~~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~ 278 (342)
++.+|.++... ........+|+..|+..+..-.- ..-..+|...+... ...-...-
T Consensus 82 ~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~----------------S~y~~~A~~~l~~l-~~~la~~e 144 (203)
T PF13525_consen 82 LYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPN----------------SEYAEEAKKRLAEL-RNRLAEHE 144 (203)
T ss_dssp HHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TT----------------STTHHHHHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcC----------------chHHHHHHHHHHHH-HHHHHHHH
Confidence 99999987532 11234567888888887653110 00112222222211 11123445
Q ss_pred HHHHHHhhhcCCHHHHHHHHHHHHHc--C---cHHHHHHHHHHHhhcChhc
Q 019340 279 LEHGLGLFTEGEMMKAVVYLELATRA--G---ETAADHVKNVILQQLSATS 324 (342)
Q Consensus 279 ~~Lg~~~~~~~~~~~A~~~~~~a~~~--~---~~~a~~~~~~~~~~~~~~~ 324 (342)
+.+|..|...|.+..|+..++..++. + .+++...+......+...+
T Consensus 145 ~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~ 195 (203)
T PF13525_consen 145 LYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQ 195 (203)
T ss_dssp HHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChH
Confidence 66777788888888888888887765 2 2345555555555554443
No 156
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.23 E-value=6.6e-06 Score=57.78 Aligned_cols=58 Identities=28% Similarity=0.409 Sum_probs=26.0
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHhC----CC-----HHHHHHHHHHHHcCCccCHHHHHHHHHHHH
Q 019340 139 AMVDAGLMYWEMDKKEAAISLYRQAAVL----GD-----PAGQFNLGISYLQAQPANAEEAVKLLYQAS 198 (342)
Q Consensus 139 a~~~lg~~~~~~~~~~~A~~~~~~a~~~----~~-----~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~ 198 (342)
++.++|.+|...|++++|+.+|+++++. ++ ..++.++|.+|. ..+++++|+.+|++++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~--~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYY--RLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHH--HTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH--HcCCHHHHHHHHHHHH
Confidence 3444555555555555555555554421 11 234444444444 4444555555544443
No 157
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.22 E-value=6e-06 Score=55.74 Aligned_cols=61 Identities=16% Similarity=0.072 Sum_probs=49.2
Q ss_pred HHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCcHH
Q 019340 244 NTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETA 308 (342)
Q Consensus 244 ~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~~ 308 (342)
.+|..+.. .+++++|+..|+++++. +++.+++.+|.++...|++++|+.+|+++++..|.+
T Consensus 2 ~~a~~~~~----~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 2 ALARALYQ----QGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHH----CTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred hHHHHHHH----cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 46666654 23999999999999887 458889999999999999999999999999887654
No 158
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.21 E-value=0.00021 Score=67.63 Aligned_cols=216 Identities=15% Similarity=0.049 Sum_probs=151.3
Q ss_pred HHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCc
Q 019340 109 KRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQP 184 (342)
Q Consensus 109 ~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~ 184 (342)
.+|.. +++.+.+...++.+.. .|++++-..|..+...|+.++|..+.+.++.. ...-+|.-+|.++. ..
T Consensus 16 k~yE~-----kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R--~d 88 (700)
T KOG1156|consen 16 KCYET-----KQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQR--SD 88 (700)
T ss_pred HHHHH-----HHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHh--hh
Confidence 45555 6888888888888874 48888888999999999999999999999864 66778888999999 89
Q ss_pred cCHHHHHHHHHHHHH--cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCC--HHHHHHHHHHHHcCCCCcccHH
Q 019340 185 ANAEEAVKLLYQASI--AGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGY--VRAMYNTSLCYSFGEGLPLSHR 260 (342)
Q Consensus 185 ~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~~~--~~a~~~lg~~y~~g~g~~~~~~ 260 (342)
++|++|++||+.|+. +++...+..|+.+..+ .++++-......+-++... ...|..++..+.. ..++.
T Consensus 89 K~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~Q----mRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L----~g~y~ 160 (700)
T KOG1156|consen 89 KKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQ----MRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHL----LGEYK 160 (700)
T ss_pred hhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH----HHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHH----HHHHH
Confidence 999999999999977 4688899999888776 5567766666666666543 3334444444422 23788
Q ss_pred HHHHHHHHHHHcC----C------HHHHHHHHHHhhhcCCHHHHHHHHHHHHHc--CcHHHHHHHHHHHhhcChhcHHHH
Q 019340 261 QARKWMKRAADCG----H------GKAQLEHGLGLFTEGEMMKAVVYLELATRA--GETAADHVKNVILQQLSATSRDRA 328 (342)
Q Consensus 261 ~A~~~~~~a~~~~----~------~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~~~~~~~~~~~~~~~~a 328 (342)
.|...+..-.... + .++...-..+....|.+++|.+.+..--.. +........+.+. +..++.++|
T Consensus 161 ~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~--~kl~~lEeA 238 (700)
T KOG1156|consen 161 MALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLL--MKLGQLEEA 238 (700)
T ss_pred HHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHH--HHHhhHHhH
Confidence 8877766654432 1 223334444556677778877776654322 2222222223333 445788899
Q ss_pred HHHHHhhhcCCCC
Q 019340 329 MLVVDSWRAMPSL 341 (342)
Q Consensus 329 ~~~~~~~~~~~~~ 341 (342)
..++..+....|.
T Consensus 239 ~~~y~~Ll~rnPd 251 (700)
T KOG1156|consen 239 VKVYRRLLERNPD 251 (700)
T ss_pred HHHHHHHHhhCch
Confidence 9999998887774
No 159
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.21 E-value=0.0011 Score=56.63 Aligned_cols=258 Identities=12% Similarity=0.044 Sum_probs=147.9
Q ss_pred HHHHHHHhhCCChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 019340 67 DVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLM 146 (342)
Q Consensus 67 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~ 146 (342)
+.+-.+...|..|+++............ .++..-...+.+.|.. .|.+..-+.-...+. .....+...++.+
T Consensus 10 d~LF~iRn~fY~Gnyq~~ine~~~~~~~---~~~~e~d~y~~raylA----lg~~~~~~~eI~~~~-~~~lqAvr~~a~~ 81 (299)
T KOG3081|consen 10 DELFNIRNYFYLGNYQQCINEAEKFSSS---KTDVELDVYMYRAYLA----LGQYQIVISEIKEGK-ATPLQAVRLLAEY 81 (299)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHHhhccc---cchhHHHHHHHHHHHH----ccccccccccccccc-CChHHHHHHHHHH
Confidence 3444555667788888776433332221 1344444445555544 112211111111111 1223344455555
Q ss_pred HhcCCCHHHHHH-HHHHHHhC-C--CHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCCC
Q 019340 147 YWEMDKKEAAIS-LYRQAAVL-G--DPAGQFNLGISYLQAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFN 222 (342)
Q Consensus 147 ~~~~~~~~~A~~-~~~~a~~~-~--~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~ 222 (342)
....++.++-+. .++..+.. + +.-....-+.+|. ..+++++|++...+. +..++...=-.|+.. ...
T Consensus 82 ~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~--~~~~~deAl~~~~~~---~~lE~~Al~VqI~lk----~~r 152 (299)
T KOG3081|consen 82 LELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYM--HDGDFDEALKALHLG---ENLEAAALNVQILLK----MHR 152 (299)
T ss_pred hhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhh--cCCChHHHHHHHhcc---chHHHHHHHHHHHHH----HHH
Confidence 555555444444 34444433 2 2233444456666 677899998888772 233333322334433 345
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHcC-CCCcccHHHHHHHHHHHHHcCC--HHHHHHHHHHhhhcCCHHHHHHHHH
Q 019340 223 LQEAARWYLRAAEGGYVRAMYNTSLCYSFG-EGLPLSHRQARKWMKRAADCGH--GKAQLEHGLGLFTEGEMMKAVVYLE 299 (342)
Q Consensus 223 ~~~A~~~~~~A~~~~~~~a~~~lg~~y~~g-~g~~~~~~~A~~~~~~a~~~~~--~~a~~~Lg~~~~~~~~~~~A~~~~~ 299 (342)
.+-|....++..+.++-.....|+..|..- .|.. .+..|.-+|+.-.+.-. +.-++..+.+...++++++|...++
T Consensus 153 ~d~A~~~lk~mq~ided~tLtQLA~awv~la~gge-k~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~ 231 (299)
T KOG3081|consen 153 FDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGE-KIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLE 231 (299)
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHHHhccch-hhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHH
Confidence 677888888877776666666677666432 1212 58999999999888633 4445667778888999999999999
Q ss_pred HHHHcCcHHHHHHHHHHH-hhcChhcHHHHHHHHHhhhcCCCCC
Q 019340 300 LATRAGETAADHVKNVIL-QQLSATSRDRAMLVVDSWRAMPSLH 342 (342)
Q Consensus 300 ~a~~~~~~~a~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~~~~ 342 (342)
.|++..+.+..++.+.+. ..+.+.+-+.-.+...+++..+|.|
T Consensus 232 eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h 275 (299)
T KOG3081|consen 232 EALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEH 275 (299)
T ss_pred HHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcc
Confidence 999886555555444333 3344555556667888888888876
No 160
>PRK15331 chaperone protein SicA; Provisional
Probab=98.21 E-value=3.2e-05 Score=61.50 Aligned_cols=94 Identities=12% Similarity=0.127 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHH--cCCHHHHHHHHHH
Q 019340 137 TLAMVDAGLMYWEMDKKEAAISLYRQAAV--LGDPAGQFNLGISYLQAQPANAEEAVKLLYQASI--AGHVRAQYQLALC 212 (342)
Q Consensus 137 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~ 212 (342)
-+..+..|.-+...|++++|...|+-.+. ..+++-++.||.++. ..+++++|+..|-.+.. .++|...+..|.|
T Consensus 37 le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q--~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC 114 (165)
T PRK15331 37 MDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQ--LKKQFQKACDLYAVAFTLLKNDYRPVFFTGQC 114 (165)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHcccCCCCccchHHHH
Confidence 35667888888899999999999998764 477888889999998 88999999999998755 4689999999999
Q ss_pred HhcCCCCCCCHHHHHHHHHHHHHC
Q 019340 213 LHRGRGVDFNLQEAARWYLRAAEG 236 (342)
Q Consensus 213 ~~~g~~~~~~~~~A~~~~~~A~~~ 236 (342)
|.. .++..+|..+|..+++.
T Consensus 115 ~l~----l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 115 QLL----MRKAAKARQCFELVNER 134 (165)
T ss_pred HHH----hCCHHHHHHHHHHHHhC
Confidence 987 78899999999988875
No 161
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.20 E-value=5.5e-06 Score=58.21 Aligned_cols=61 Identities=21% Similarity=0.346 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC----C-----CHHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 019340 101 AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR----G-----STLAMVDAGLMYWEMDKKEAAISLYRQAAV 165 (342)
Q Consensus 101 a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~----~-----~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~ 165 (342)
+.++..+|.+|.. .+++++|+.+|+++++. | -+.++.++|.+|...|++++|+++|+++++
T Consensus 5 a~~~~~la~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRE----LGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHH----TT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4678899999998 69999999999999864 3 245678999999999999999999999975
No 162
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.13 E-value=0.00018 Score=62.15 Aligned_cols=208 Identities=11% Similarity=-0.064 Sum_probs=106.8
Q ss_pred CCChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCCCHHHHHHH--HHHHhcCCCH
Q 019340 76 FTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDA--GLMYWEMDKK 153 (342)
Q Consensus 76 ~~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~l--g~~~~~~~~~ 153 (342)
+...++..++.......+..+. .-.++..||.||.+ .+++..|.+.|++......-.+++.+ +.-+...+.+
T Consensus 21 I~d~ry~DaI~~l~s~~Er~p~--~rAgLSlLgyCYY~----~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ 94 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSELERSPR--SRAGLSLLGYCYYR----LQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIY 94 (459)
T ss_pred HHHhhHHHHHHHHHHHHhcCcc--chHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhccc
Confidence 3456677787777666666543 56678889999999 68999999999998876544444332 3333345555
Q ss_pred HHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Q 019340 154 EAAISLYRQAAVLGD--PAGQFNLGISYLQAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYL 231 (342)
Q Consensus 154 ~~A~~~~~~a~~~~~--~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~ 231 (342)
..|+.......+..+ .+..-.-+-+.+ ..+|+.-+....++....+.++...+.|.+.+. .++++.|++-|+
T Consensus 95 ADALrV~~~~~D~~~L~~~~lqLqaAIkY--se~Dl~g~rsLveQlp~en~Ad~~in~gCllyk----egqyEaAvqkFq 168 (459)
T KOG4340|consen 95 ADALRVAFLLLDNPALHSRVLQLQAAIKY--SEGDLPGSRSLVEQLPSENEADGQINLGCLLYK----EGQYEAAVQKFQ 168 (459)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhc--ccccCcchHHHHHhccCCCccchhccchheeec----cccHHHHHHHHH
Confidence 555544433322100 000000011111 223333333333333333444444444444433 334444444444
Q ss_pred HHHHCC--CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc-------------------------------CCHHHH
Q 019340 232 RAAEGG--YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC-------------------------------GHGKAQ 278 (342)
Q Consensus 232 ~A~~~~--~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~-------------------------------~~~~a~ 278 (342)
.|.+.+ .+...|+++.+... .+++..|+++....++. +-.++.
T Consensus 169 aAlqvsGyqpllAYniALaHy~----~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAf 244 (459)
T KOG4340|consen 169 AALQVSGYQPLLAYNLALAHYS----SRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAF 244 (459)
T ss_pred HHHhhcCCCchhHHHHHHHHHh----hhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHh
Confidence 444431 23334444444432 11444444444444332 112344
Q ss_pred HHHHHHhhhcCCHHHHHHHHH
Q 019340 279 LEHGLGLFTEGEMMKAVVYLE 299 (342)
Q Consensus 279 ~~Lg~~~~~~~~~~~A~~~~~ 299 (342)
+--+.++++.+|++.|.+.+.
T Consensus 245 NLKaAIeyq~~n~eAA~eaLt 265 (459)
T KOG4340|consen 245 NLKAAIEYQLRNYEAAQEALT 265 (459)
T ss_pred hhhhhhhhhcccHHHHHHHhh
Confidence 555667888888888877665
No 163
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.13 E-value=0.00065 Score=63.87 Aligned_cols=209 Identities=14% Similarity=0.020 Sum_probs=142.2
Q ss_pred CcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHH--hCCCHHHHHHHHHHHHcCCccCHHHHHH
Q 019340 117 VRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAA--VLGDPAGQFNLGISYLQAQPANAEEAVK 192 (342)
Q Consensus 117 ~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~--~~~~~~a~~~Lg~~~~~g~~~~~~~A~~ 192 (342)
-.+++++|+....+.+.. ++.++...--.+....+.|++|++..++-- ..++.- .|.-+.|.+ ..+..++|+.
T Consensus 24 ~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~-~fEKAYc~Y--rlnk~Dealk 100 (652)
T KOG2376|consen 24 KNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSF-FFEKAYCEY--RLNKLDEALK 100 (652)
T ss_pred cchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchh-hHHHHHHHH--HcccHHHHHH
Confidence 357999999999998887 577777766667778899999997776633 223222 267778888 8889999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCC--HHHHHHHHHHHHcCCCCcccHHHHHHHHHHHH
Q 019340 193 LLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGY--VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAA 270 (342)
Q Consensus 193 ~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~~~--~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~ 270 (342)
.+. .++..+......-|.+++. ..++++|+..|+..+..+. .+.....+..-.. ......+++...
T Consensus 101 ~~~-~~~~~~~~ll~L~AQvlYr----l~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~-------a~l~~~~~q~v~ 168 (652)
T KOG2376|consen 101 TLK-GLDRLDDKLLELRAQVLYR----LERYDEALDIYQHLAKNNSDDQDEERRANLLAVA-------AALQVQLLQSVP 168 (652)
T ss_pred HHh-cccccchHHHHHHHHHHHH----HhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH-------HhhhHHHHHhcc
Confidence 998 6666666666666777666 6789999999999987643 3333322222210 111112333332
Q ss_pred H--cCCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHcC----------cHHH-----HHHHHHHHhhcChhcHHHHHHHHH
Q 019340 271 D--CGHGKAQLEHGLGLFTEGEMMKAVVYLELATRAG----------ETAA-----DHVKNVILQQLSATSRDRAMLVVD 333 (342)
Q Consensus 271 ~--~~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~----------~~~a-----~~~~~~~~~~~~~~~~~~a~~~~~ 333 (342)
. .+.-+-+||.+.++...|++.+|++.++.|.+.+ ..+. .....+.+.....|+.++|..++.
T Consensus 169 ~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~ 248 (652)
T KOG2376|consen 169 EVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYV 248 (652)
T ss_pred CCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 2 2457788999999999999999999999994331 1111 123334444456688889998777
Q ss_pred hhhcCCC
Q 019340 334 SWRAMPS 340 (342)
Q Consensus 334 ~~~~~~~ 340 (342)
.+.+..+
T Consensus 249 ~~i~~~~ 255 (652)
T KOG2376|consen 249 DIIKRNP 255 (652)
T ss_pred HHHHhcC
Confidence 7765544
No 164
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.11 E-value=2.5e-05 Score=69.40 Aligned_cols=195 Identities=13% Similarity=0.061 Sum_probs=138.6
Q ss_pred CCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC----CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCHHHHH
Q 019340 98 LREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR----GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQF 173 (342)
Q Consensus 98 ~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~----~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~ 173 (342)
.+...+...++..+.. +.+.+.++.-++..+.. .++....-.|.++...|++++|++.+.+. ++.++..
T Consensus 63 ~~~l~av~~la~y~~~----~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~---~~lE~~a 135 (290)
T PF04733_consen 63 SPELQAVRLLAEYLSS----PSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG---GSLELLA 135 (290)
T ss_dssp SCCCHHHHHHHHHHCT----STTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT---TCHHHHH
T ss_pred ChhHHHHHHHHHHHhC----ccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc---CcccHHH
Confidence 3445666667766544 35666777666654432 24456677888998899999999988775 7888888
Q ss_pred HHHHHHHcCCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHh--cCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHH
Q 019340 174 NLGISYLQAQPANAEEAVKLLYQASIAGHVRAQYQLALCLH--RGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCY 249 (342)
Q Consensus 174 ~Lg~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~--~g~~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y 249 (342)
..-.+|. ..++++.|.+.++..-+.++-....+|+..+. ..+ ...+.+|...|+...+. ..+..++.++.++
T Consensus 136 l~Vqi~L--~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g--~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~ 211 (290)
T PF04733_consen 136 LAVQILL--KMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATG--GEKYQDAFYIFEELSDKFGSTPKLLNGLAVCH 211 (290)
T ss_dssp HHHHHHH--HTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHT--TTCCCHHHHHHHHHHCCS--SHHHHHHHHHHH
T ss_pred HHHHHHH--HcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhC--chhHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 8888888 78899999999988776655455555554443 212 24688999999997765 3566777788888
Q ss_pred HcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhhcCCH-HHHHHHHHHHHHcCcH
Q 019340 250 SFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEM-MKAVVYLELATRAGET 307 (342)
Q Consensus 250 ~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~-~~A~~~~~~a~~~~~~ 307 (342)
.. .| ++++|...++.|+.. ++++.+.|++.+....|+. +.+.+++.+.....+.
T Consensus 212 l~-~~---~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~ 268 (290)
T PF04733_consen 212 LQ-LG---HYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPN 268 (290)
T ss_dssp HH-CT----HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTT
T ss_pred HH-hC---CHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCC
Confidence 54 33 999999999999875 5688889999998888887 6677787776665543
No 165
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.10 E-value=0.00077 Score=65.72 Aligned_cols=91 Identities=21% Similarity=0.184 Sum_probs=65.1
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHh----------------------CCCHHHHHHHHHHHHcCCccCHHHHHHHHH
Q 019340 138 LAMVDAGLMYWEMDKKEAAISLYRQAAV----------------------LGDPAGQFNLGISYLQAQPANAEEAVKLLY 195 (342)
Q Consensus 138 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~----------------------~~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~ 195 (342)
..+++.+.-+...+|++.|+++|+|+-. ..++..+.+-|.... ..|+.+-|+.+|.
T Consensus 859 ~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlE--S~GemdaAl~~Y~ 936 (1416)
T KOG3617|consen 859 NTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLE--SVGEMDAALSFYS 936 (1416)
T ss_pred hhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHh--cccchHHHHHHHH
Confidence 4567777777777888889988888631 123444445555555 5778888888887
Q ss_pred HHHH-----------------------cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Q 019340 196 QASI-----------------------AGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAA 234 (342)
Q Consensus 196 ~a~~-----------------------~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~ 234 (342)
.|-+ .|+-.|+|.||..|+. .++..+|+.+|.+|-
T Consensus 937 ~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn----~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 937 SAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYEN----DGDVVKAVKFFTRAQ 994 (1416)
T ss_pred HhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhh----hHHHHHHHHHHHHHH
Confidence 7621 3577888889988887 678888988888873
No 166
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.07 E-value=0.00012 Score=64.65 Aligned_cols=204 Identities=12% Similarity=0.032 Sum_probs=134.6
Q ss_pred cCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCccCHHHHHH
Q 019340 118 RKNLDKALDSFLKGAARG---STLAMVDAGLMYWEMDKKEAAISLYRQAAVLG--DPAGQFNLGISYLQAQPANAEEAVK 192 (342)
Q Consensus 118 ~~~~~~A~~~~~~A~~~~---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~~~~g~~~~~~~A~~ 192 (342)
.+|++-|+.+++-....+ ..+....+|.+++..||+++|...|+-+.+.+ +.+...+|+.+++ -.|.+.+|..
T Consensus 35 ~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~F--yLg~Y~eA~~ 112 (557)
T KOG3785|consen 35 NRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKF--YLGQYIEAKS 112 (557)
T ss_pred cccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHH--HHHHHHHHHH
Confidence 489999999999888765 34567889999999999999999999998774 4577889999999 6778888887
Q ss_pred HHHHHHHcC-CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH
Q 019340 193 LLYQASIAG-HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAAD 271 (342)
Q Consensus 193 ~~~~a~~~~-~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~ 271 (342)
.-.++.+.- ..+..++|+.-+ +.++-+..|...+.. ...-+..|+.+.... --+.+|++.|++.+.
T Consensus 113 ~~~ka~k~pL~~RLlfhlahkl--------ndEk~~~~fh~~LqD-~~EdqLSLAsvhYmR----~HYQeAIdvYkrvL~ 179 (557)
T KOG3785|consen 113 IAEKAPKTPLCIRLLFHLAHKL--------NDEKRILTFHSSLQD-TLEDQLSLASVHYMR----MHYQEAIDVYKRVLQ 179 (557)
T ss_pred HHhhCCCChHHHHHHHHHHHHh--------CcHHHHHHHHHHHhh-hHHHHHhHHHHHHHH----HHHHHHHHHHHHHHh
Confidence 766654321 234455555433 334445455544432 223344444443221 268999999999986
Q ss_pred cCC--HHHHHHHHHHhhhcCCHHHHHHHHHHHHHc-CcHHHHHHHHHHHhhc---ChhcHHHHHHHHHhhh
Q 019340 272 CGH--GKAQLEHGLGLFTEGEMMKAVVYLELATRA-GETAADHVKNVILQQL---SATSRDRAMLVVDSWR 336 (342)
Q Consensus 272 ~~~--~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~-~~~~a~~~~~~~~~~~---~~~~~~~a~~~~~~~~ 336 (342)
.+. ..--.+++.+|+...-++-+.+.+.--+.. ++.....++......+ .....++-..++.+.-
T Consensus 180 dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~ 250 (557)
T KOG3785|consen 180 DNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNID 250 (557)
T ss_pred cChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccc
Confidence 533 222367899999999999999888888776 3333333333333322 3333334444555443
No 167
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.03 E-value=0.00014 Score=62.96 Aligned_cols=178 Identities=14% Similarity=0.096 Sum_probs=121.1
Q ss_pred CCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCccCHHHHHHHHHH
Q 019340 119 KNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQFNLGISYLQAQPANAEEAVKLLYQ 196 (342)
Q Consensus 119 ~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~ 196 (342)
.++.+|++.+.--.+.. +..++..||.||....++..|..+|++........+.|.+-.+--.-..+.+..|+.....
T Consensus 24 ~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~ 103 (459)
T KOG4340|consen 24 ARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFL 103 (459)
T ss_pred hhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 56778888777766654 4566778899999999999999999998887777776665333211145566777766655
Q ss_pred HHHcC---CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc-
Q 019340 197 ASIAG---HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC- 272 (342)
Q Consensus 197 a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~- 272 (342)
..+.. +-..+..-+..|. ..|+.-+....++-...++++...+.|-+... .| +++.|.+-|..|.+-
T Consensus 104 ~~D~~~L~~~~lqLqaAIkYs-----e~Dl~g~rsLveQlp~en~Ad~~in~gCllyk-eg---qyEaAvqkFqaAlqvs 174 (459)
T KOG4340|consen 104 LLDNPALHSRVLQLQAAIKYS-----EGDLPGSRSLVEQLPSENEADGQINLGCLLYK-EG---QYEAAVQKFQAALQVS 174 (459)
T ss_pred hcCCHHHHHHHHHHHHHHhcc-----cccCcchHHHHHhccCCCccchhccchheeec-cc---cHHHHHHHHHHHHhhc
Confidence 54432 1122233333343 34566666666666666778888888866633 33 888888888888875
Q ss_pred C-CHHHHHHHHHHhhhcCCHHHHHHHHHHHHHcC
Q 019340 273 G-HGKAQLEHGLGLFTEGEMMKAVVYLELATRAG 305 (342)
Q Consensus 273 ~-~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~ 305 (342)
| .+--.++++.++++.+++..|+++-..-++.|
T Consensus 175 GyqpllAYniALaHy~~~qyasALk~iSEIieRG 208 (459)
T KOG4340|consen 175 GYQPLLAYNLALAHYSSRQYASALKHISEIIERG 208 (459)
T ss_pred CCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhh
Confidence 3 34555788888888888888888888777765
No 168
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.02 E-value=0.00089 Score=65.29 Aligned_cols=116 Identities=15% Similarity=0.118 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHcCCccCHHHHHHHHHHHHH----------------------cCCHHHHHHHHHHHhcCCCCCCCHHHH
Q 019340 169 PAGQFNLGISYLQAQPANAEEAVKLLYQASI----------------------AGHVRAQYQLALCLHRGRGVDFNLQEA 226 (342)
Q Consensus 169 ~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~----------------------~~~~~a~~~lg~~~~~g~~~~~~~~~A 226 (342)
...+++.+.-+. ..+|.+.|++||+|+-. ..++..+-.+|..++. .++++-|
T Consensus 858 r~Tyy~yA~~Le--ar~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES----~GemdaA 931 (1416)
T KOG3617|consen 858 RNTYYNYAKYLE--ARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLES----VGEMDAA 931 (1416)
T ss_pred hhhHHHHHHHHH--hhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhc----ccchHHH
Confidence 345666666666 67899999999998621 1245556677777766 6678888
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHhhhcCCHHHHHHHHHHHHH
Q 019340 227 ARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHGLGLFTEGEMMKAVVYLELATR 303 (342)
Q Consensus 227 ~~~~~~A~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~ 303 (342)
+.+|..|- -|+.+-.+... ..+.++|... |-+.|+..|+|.||-.|.+.|++.+|+.+|.+|-.
T Consensus 932 l~~Y~~A~------D~fs~VrI~C~----qGk~~kAa~i---A~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 932 LSFYSSAK------DYFSMVRIKCI----QGKTDKAARI---AEESGDKAACYHLARMYENDGDVVKAVKFFTRAQA 995 (1416)
T ss_pred HHHHHHhh------hhhhheeeEee----ccCchHHHHH---HHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 88888763 23444333322 2256666543 33457888899999999999999999999988743
No 169
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.01 E-value=2.9e-05 Score=71.33 Aligned_cols=69 Identities=13% Similarity=0.029 Sum_probs=61.6
Q ss_pred cCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC--CHH---HHHHHHHHHhcCCCHHHHHHHHHHHHhCCCH
Q 019340 97 PLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STL---AMVDAGLMYWEMDKKEAAISLYRQAAVLGDP 169 (342)
Q Consensus 97 ~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~---a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~ 169 (342)
+..++++++++|.+|.. .+++++|+..|++|++.+ +++ +++++|.+|...|++++|+.+|++|++..++
T Consensus 71 dP~~a~a~~NLG~AL~~----lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~ 144 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFS----KGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNL 144 (453)
T ss_pred CCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcch
Confidence 46789999999999999 599999999999999974 553 4999999999999999999999999997544
No 170
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.97 E-value=0.0098 Score=54.90 Aligned_cols=81 Identities=12% Similarity=0.167 Sum_probs=45.1
Q ss_pred ChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHhcCCCHHHH
Q 019340 78 LPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG-STLAMVDAGLMYWEMDKKEAA 156 (342)
Q Consensus 78 ~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~-~~~a~~~lg~~~~~~~~~~~A 156 (342)
.||...|..++.+|++-.++..-+..+...-+-| ++.+.|...|++-+-.. +...+...+..-...|+..-|
T Consensus 154 LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRy-------keieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~a 226 (677)
T KOG1915|consen 154 LGNIAGARQIFERWMEWEPDEQAWLSFIKFELRY-------KEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALA 226 (677)
T ss_pred hcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHh-------hHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHH
Confidence 4778888888899998876643333333222222 44555666666554432 344444555555555555555
Q ss_pred HHHHHHHHh
Q 019340 157 ISLYRQAAV 165 (342)
Q Consensus 157 ~~~~~~a~~ 165 (342)
...|++|++
T Consensus 227 R~VyerAie 235 (677)
T KOG1915|consen 227 RSVYERAIE 235 (677)
T ss_pred HHHHHHHHH
Confidence 555555553
No 171
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.96 E-value=0.00017 Score=64.94 Aligned_cols=104 Identities=12% Similarity=0.112 Sum_probs=83.4
Q ss_pred HHHHHHHcCCCCcCCHHHHHHHHHHHHhC-C----------------CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--
Q 019340 106 RWGKRFKHGRGVRKNLDKALDSFLKGAAR-G----------------STLAMVDAGLMYWEMDKKEAAISLYRQAAVL-- 166 (342)
Q Consensus 106 ~lg~~y~~g~g~~~~~~~A~~~~~~A~~~-~----------------~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-- 166 (342)
.-|..|.. .+++..|..-|++|+.. + -...+.||+.+|...+++.+|+.+..++++.
T Consensus 213 e~Gn~~fK----~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~ 288 (397)
T KOG0543|consen 213 ERGNVLFK----EGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDP 288 (397)
T ss_pred HhhhHHHh----hchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCC
Confidence 34666666 47888888888888763 1 1235689999999999999999999998865
Q ss_pred CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHH--cCCHHHHHHHHHHHhc
Q 019340 167 GDPAGQFNLGISYLQAQPANAEEAVKLLYQASI--AGHVRAQYQLALCLHR 215 (342)
Q Consensus 167 ~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~ 215 (342)
+|..|+|.-|.++. ..++++.|+..|+++++ +++..+...|..|-..
T Consensus 289 ~N~KALyRrG~A~l--~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k 337 (397)
T KOG0543|consen 289 NNVKALYRRGQALL--ALGEYDLARDDFQKALKLEPSNKAARAELIKLKQK 337 (397)
T ss_pred CchhHHHHHHHHHH--hhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 88899999999999 88899999999999876 4677888888777653
No 172
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.95 E-value=0.0078 Score=49.94 Aligned_cols=193 Identities=22% Similarity=0.177 Sum_probs=136.7
Q ss_pred HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHH
Q 019340 101 AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAA----RGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFN 174 (342)
Q Consensus 101 a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~----~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~ 174 (342)
......++..+.. .+++..++..+..+.. ......+..+|..+...+++.+++..+.++... .+......
T Consensus 59 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (291)
T COG0457 59 AGLLLLLALALLK----LGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEAL 134 (291)
T ss_pred hHHHHHHHHHHHH----cccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHH
Confidence 4666667777776 4788888888888764 246667778888888888888888888888864 33344444
Q ss_pred HHH-HHHcCCccCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHH
Q 019340 175 LGI-SYLQAQPANAEEAVKLLYQASIAG-----HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG---YVRAMYNT 245 (342)
Q Consensus 175 Lg~-~~~~g~~~~~~~A~~~~~~a~~~~-----~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~~---~~~a~~~l 245 (342)
.+. ++. ..+++++|+.+|.+++... .......++..+.. ..+..+++..+.+++... ....+..+
T Consensus 135 ~~~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 208 (291)
T COG0457 135 LALGALY--ELGDYEEALELYEKALELDPELNELAEALLALGALLEA----LGRYEEALELLEKALKLNPDDDAEALLNL 208 (291)
T ss_pred HHHHHHH--HcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHH----hcCHHHHHHHHHHHHhhCcccchHHHHHh
Confidence 454 666 7788888888888886632 23334444444433 557888888888887763 35677778
Q ss_pred HHHHHcCCCCcccHHHHHHHHHHHHHcCC--HHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCcH
Q 019340 246 SLCYSFGEGLPLSHRQARKWMKRAADCGH--GKAQLEHGLGLFTEGEMMKAVVYLELATRAGET 307 (342)
Q Consensus 246 g~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~ 307 (342)
+..+.... ++.+|...+..+..... ......++..+...++.+++...+.+++...+.
T Consensus 209 ~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 209 GLLYLKLG----KYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred hHHHHHcc----cHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 88875422 78888888888887644 466677777777666788888888888877665
No 173
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.93 E-value=0.0024 Score=53.54 Aligned_cols=122 Identities=23% Similarity=0.232 Sum_probs=64.7
Q ss_pred HHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC----C----CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC----CC---
Q 019340 104 LLRWGKRFKHGRGVRKNLDKALDSFLKGAAR----G----STLAMVDAGLMYWEMDKKEAAISLYRQAAVL----GD--- 168 (342)
Q Consensus 104 ~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~----~----~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----~~--- 168 (342)
+..-|.+|.. .+++..|=..|.+|++. | -+..+...+.+|. ..++++|+.+++++++. |.
T Consensus 37 ~~~Aan~ykl----aK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cyk-k~~~~eAv~cL~~aieIyt~~Grf~~ 111 (288)
T KOG1586|consen 37 YERAANMYKL----AKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYK-KVDPEEAVNCLEKAIEIYTDMGRFTM 111 (288)
T ss_pred HHHHHHHHHH----HHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhh-ccChHHHHHHHHHHHHHHHhhhHHHH
Confidence 3344555555 46677777777776653 2 1233445555553 34777777777777654 11
Q ss_pred -HHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--C-CH-----HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Q 019340 169 -PAGQFNLGISYLQAQPANAEEAVKLLYQASIA--G-HV-----RAQYQLALCLHRGRGVDFNLQEAARWYLRAAE 235 (342)
Q Consensus 169 -~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~-~~-----~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~ 235 (342)
+.-+..||.+|.. +..|+++||.+|+++.+- + .. ..+...+..-.. ..++.+|+..|++.+.
T Consensus 112 aAk~~~~iaEiyEs-dl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~----leqY~~Ai~iyeqva~ 182 (288)
T KOG1586|consen 112 AAKHHIEIAEIYES-DLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQ----LEQYSKAIDIYEQVAR 182 (288)
T ss_pred HHhhhhhHHHHHhh-hHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 2233445666652 346777777777776652 1 11 111222222222 4566777777766654
No 174
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.92 E-value=0.00032 Score=53.21 Aligned_cols=98 Identities=20% Similarity=0.127 Sum_probs=81.3
Q ss_pred HHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCC-C-----HHHHHHHHHH
Q 019340 107 WGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLG-D-----PAGQFNLGIS 178 (342)
Q Consensus 107 lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~-~-----~~a~~~Lg~~ 178 (342)
-|++...+ ++.+.|++.|.+++.. ..+.++.+-+..+.-.|+.++|+.=+.+|+++. + ..++..-|.+
T Consensus 49 ~~valaE~----g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~l 124 (175)
T KOG4555|consen 49 KAIALAEA----GDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLL 124 (175)
T ss_pred HHHHHHhc----cchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHH
Confidence 36666664 8999999999999886 588899999999999999999999999999872 2 3577788888
Q ss_pred HHcCCccCHHHHHHHHHHHHHcCCHHHHHHHH
Q 019340 179 YLQAQPANAEEAVKLLYQASIAGHVRAQYQLA 210 (342)
Q Consensus 179 ~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg 210 (342)
|. ..++.+.|..-|+.+++.|.+-+...|-
T Consensus 125 yR--l~g~dd~AR~DFe~AA~LGS~FAr~QLV 154 (175)
T KOG4555|consen 125 YR--LLGNDDAARADFEAAAQLGSKFAREQLV 154 (175)
T ss_pred HH--HhCchHHHHHhHHHHHHhCCHHHHHHHH
Confidence 88 7889999999999999988877665553
No 175
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.90 E-value=0.00068 Score=60.23 Aligned_cols=110 Identities=22% Similarity=0.219 Sum_probs=51.5
Q ss_pred CCHHHHHHHHHHHHhC----CCH----HHHHHHHHHHhcCCCHHHHHHHHHHHHhC------CCH------HHHHHHHHH
Q 019340 119 KNLDKALDSFLKGAAR----GST----LAMVDAGLMYWEMDKKEAAISLYRQAAVL------GDP------AGQFNLGIS 178 (342)
Q Consensus 119 ~~~~~A~~~~~~A~~~----~~~----~a~~~lg~~~~~~~~~~~A~~~~~~a~~~------~~~------~a~~~Lg~~ 178 (342)
+.++++++.|++|... +|+ ..+..||.+|...+|+++|..+..+|++. ++. .+++.++..
T Consensus 136 s~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaVa 215 (518)
T KOG1941|consen 136 SVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVA 215 (518)
T ss_pred HHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHH
Confidence 3455555555555543 121 23455555555555555555555555432 221 233444444
Q ss_pred HHcCCccCHHHHHHHHHHH----HHcC----CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Q 019340 179 YLQAQPANAEEAVKLLYQA----SIAG----HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAA 234 (342)
Q Consensus 179 ~~~g~~~~~~~A~~~~~~a----~~~~----~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~ 234 (342)
+. ..|..-.|.++.+.+ ++.| +.....-+|.+|.. .+|++.|+.-|+.|.
T Consensus 216 lR--~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~----~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 216 LR--LLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRS----RGDLERAFRRYEQAM 273 (518)
T ss_pred HH--HhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHh----cccHhHHHHHHHHHH
Confidence 44 233333344444432 2233 23344455555554 445555555555553
No 176
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.90 E-value=6.9e-05 Score=68.91 Aligned_cols=70 Identities=14% Similarity=-0.014 Sum_probs=54.1
Q ss_pred CCcHHHHHHHHhhCCChhHHhhHHHHHHHHHHhCcCCCH-HHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCCC
Q 019340 63 SLPFDVLNKIAASFTLPQLRAASLVCKSWNDALRPLREA-MVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGS 136 (342)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~a-~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~ 136 (342)
+.+.........++..+++.+|...+.+.++..++...+ .++|++|.+|.. .++.++|+..|++|++.++
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~----LGr~dEAla~LrrALelsn 143 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAY----REEGKKAADCLRTALRDYN 143 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhcc
Confidence 346667777888888888888888888888877663333 568888888888 5888888888888888643
No 177
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=97.88 E-value=3e-05 Score=45.42 Aligned_cols=35 Identities=34% Similarity=0.578 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCCC
Q 019340 102 MVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGS 136 (342)
Q Consensus 102 ~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~ 136 (342)
.+++.||.+|..|.|+++|.++|+.||++|++.++
T Consensus 2 ~a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~~g~ 36 (36)
T smart00671 2 EAQYNLGQMYEYGLGVKKDLEKALEYYKKAAELGN 36 (36)
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHccC
Confidence 57899999999999999999999999999998764
No 178
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.87 E-value=0.00023 Score=61.10 Aligned_cols=91 Identities=18% Similarity=0.140 Sum_probs=64.8
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhC-----CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc-----CCHHHHHHH
Q 019340 140 MVDAGLMYWEMDKKEAAISLYRQAAVL-----GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA-----GHVRAQYQL 209 (342)
Q Consensus 140 ~~~lg~~~~~~~~~~~A~~~~~~a~~~-----~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~-----~~~~a~~~l 209 (342)
.|+.+.-+...||+..|...|..-++. --++|+|+||.+++ ..++++.|...|..++.. .-|++++.|
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y--~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLY--AQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHH--hcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 566666666777777777777777765 23677777777777 777777777777777663 246777777
Q ss_pred HHHHhcCCCCCCCHHHHHHHHHHHHHC
Q 019340 210 ALCLHRGRGVDFNLQEAARWYLRAAEG 236 (342)
Q Consensus 210 g~~~~~g~~~~~~~~~A~~~~~~A~~~ 236 (342)
|.|... .++.++|-..|++.++.
T Consensus 222 g~~~~~----l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 222 GVSLGR----LGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHH----hcCHHHHHHHHHHHHHH
Confidence 777766 66777777777777765
No 179
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.86 E-value=0.00028 Score=60.60 Aligned_cols=82 Identities=13% Similarity=0.046 Sum_probs=40.3
Q ss_pred CccCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHcC
Q 019340 183 QPANAEEAVKLLYQASIAG-----HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG-----GYVRAMYNTSLCYSFG 252 (342)
Q Consensus 183 ~~~~~~~A~~~~~~a~~~~-----~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~-----~~~~a~~~lg~~y~~g 252 (342)
..+++..|..-|..-++.. -+.|+|+||.+++. .++++.|...|..++.. .-+++++.||.+...
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~----qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~- 227 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYA----QGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGR- 227 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHh----cccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHH-
Confidence 3445555555555554421 24555555555554 44555555555555443 134555555555532
Q ss_pred CCCcccHHHHHHHHHHHHHc
Q 019340 253 EGLPLSHRQARKWMKRAADC 272 (342)
Q Consensus 253 ~g~~~~~~~A~~~~~~a~~~ 272 (342)
.++.++|...|++.++.
T Consensus 228 ---l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 228 ---LGNTDEACATLQQVIKR 244 (262)
T ss_pred ---hcCHHHHHHHHHHHHHH
Confidence 22555555555555544
No 180
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=97.84 E-value=3.4e-05 Score=45.18 Aligned_cols=33 Identities=33% Similarity=0.571 Sum_probs=17.1
Q ss_pred HHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcC
Q 019340 241 AMYNTSLCYSFGEGLPLSHRQARKWMKRAADCG 273 (342)
Q Consensus 241 a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~ 273 (342)
+++.||.+|..|.|+++|..+|+.||++|++.+
T Consensus 3 a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~~g 35 (36)
T smart00671 3 AQYNLGQMYEYGLGVKKDLEKALEYYKKAAELG 35 (36)
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHcc
Confidence 445555555555555555555555555555443
No 181
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.83 E-value=0.0026 Score=56.53 Aligned_cols=214 Identities=14% Similarity=0.032 Sum_probs=137.3
Q ss_pred HHhhCCChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhc
Q 019340 72 IAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWE 149 (342)
Q Consensus 72 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~ 149 (342)
....+...++..|..++.-.... .+-........+|.||.+ .+|+++|+..|.-+.+.. +.+...+|+-+++.
T Consensus 29 Ledfls~rDytGAislLefk~~~-~~EEE~~~~lWia~C~fh----LgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~Fy 103 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNL-DREEEDSLQLWIAHCYFH----LGDYEEALNVYTFLMNKDDAPAELGVNLACCKFY 103 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhcc-chhhhHHHHHHHHHHHHh----hccHHHHHHHHHHHhccCCCCcccchhHHHHHHH
Confidence 33456788898997665433322 222234577789999999 689999999999998875 55667899999999
Q ss_pred CCCHHHHHHHHHHHHhC-CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCCCHHHHHH
Q 019340 150 MDKKEAAISLYRQAAVL-GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAAR 228 (342)
Q Consensus 150 ~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~ 228 (342)
.|.+.+|...-.++.+. -....+++|+.-+ +.++-+..|...+... .+-+..|+.+.+. ...+++|+.
T Consensus 104 Lg~Y~eA~~~~~ka~k~pL~~RLlfhlahkl------ndEk~~~~fh~~LqD~-~EdqLSLAsvhYm----R~HYQeAId 172 (557)
T KOG3785|consen 104 LGQYIEAKSIAEKAPKTPLCIRLLFHLAHKL------NDEKRILTFHSSLQDT-LEDQLSLASVHYM----RMHYQEAID 172 (557)
T ss_pred HHHHHHHHHHHhhCCCChHHHHHHHHHHHHh------CcHHHHHHHHHHHhhh-HHHHHhHHHHHHH----HHHHHHHHH
Confidence 99999998877666543 1223444444322 2244555565554432 3556666666554 446899999
Q ss_pred HHHHHHHCC--CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHc
Q 019340 229 WYLRAAEGG--YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRA 304 (342)
Q Consensus 229 ~~~~A~~~~--~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~ 304 (342)
.|++.+..+ ....-.+++.||..-. -++.+.+.++--+.+ +++-+.+-++...++.=+-.-|..-.+...+.
T Consensus 173 vYkrvL~dn~ey~alNVy~ALCyyKlD----Yydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN 248 (557)
T KOG3785|consen 173 VYKRVLQDNPEYIALNVYMALCYYKLD----YYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADN 248 (557)
T ss_pred HHHHHHhcChhhhhhHHHHHHHHHhcc----hhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhc
Confidence 999988653 3445578899985422 567777777777765 44555555555555543333444444444444
Q ss_pred C
Q 019340 305 G 305 (342)
Q Consensus 305 ~ 305 (342)
+
T Consensus 249 ~ 249 (557)
T KOG3785|consen 249 I 249 (557)
T ss_pred c
Confidence 3
No 182
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.81 E-value=0.014 Score=48.45 Aligned_cols=209 Identities=20% Similarity=0.144 Sum_probs=144.6
Q ss_pred CCHHHHHHHHHHHHhCCC----HHHHHHHHHHHhcCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHcCCccCHHHH
Q 019340 119 KNLDKALDSFLKGAARGS----TLAMVDAGLMYWEMDKKEAAISLYRQAAV----LGDPAGQFNLGISYLQAQPANAEEA 190 (342)
Q Consensus 119 ~~~~~A~~~~~~A~~~~~----~~a~~~lg~~~~~~~~~~~A~~~~~~a~~----~~~~~a~~~Lg~~~~~g~~~~~~~A 190 (342)
.....+...+........ .......+..+...+++..++..+..... ......++.++.++. ..+++.++
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 114 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLE--ALGKYEEA 114 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHH--HHhhHHHH
Confidence 456667777777776542 57778888888888899999888888864 356677778888887 77788889
Q ss_pred HHHHHHHHHc--CCHHHHHHHHH-HHhcCCCCCCCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHcCCCCcccHHHH
Q 019340 191 VKLLYQASIA--GHVRAQYQLAL-CLHRGRGVDFNLQEAARWYLRAAEGG-----YVRAMYNTSLCYSFGEGLPLSHRQA 262 (342)
Q Consensus 191 ~~~~~~a~~~--~~~~a~~~lg~-~~~~g~~~~~~~~~A~~~~~~A~~~~-----~~~a~~~lg~~y~~g~g~~~~~~~A 262 (342)
+..+.++... .........+. ++.. .+++++|...|.+++... ........+..+.. ..++.++
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~a 186 (291)
T COG0457 115 LELLEKALALDPDPDLAEALLALGALYE----LGDYEEALELYEKALELDPELNELAEALLALGALLEA----LGRYEEA 186 (291)
T ss_pred HHHHHHHHcCCCCcchHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHH----hcCHHHH
Confidence 9999888774 33334444444 5555 668889999998887742 23444555554432 2388889
Q ss_pred HHHHHHHHHc--C-CHHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCcH--HHHHHHHHHHhhcChhcHHHHHHHHHhhhc
Q 019340 263 RKWMKRAADC--G-HGKAQLEHGLGLFTEGEMMKAVVYLELATRAGET--AADHVKNVILQQLSATSRDRAMLVVDSWRA 337 (342)
Q Consensus 263 ~~~~~~a~~~--~-~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~--~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 337 (342)
+..+.++... . .......++..+...+++++|...+..++...+. ........... ..+..+.+.....+...
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 187 LELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLL--ELGRYEEALEALEKALE 264 (291)
T ss_pred HHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHH--HcCCHHHHHHHHHHHHH
Confidence 9998888876 3 3567788888888888899999999998887764 33333333333 33456666666665554
Q ss_pred CC
Q 019340 338 MP 339 (342)
Q Consensus 338 ~~ 339 (342)
..
T Consensus 265 ~~ 266 (291)
T COG0457 265 LD 266 (291)
T ss_pred hC
Confidence 43
No 183
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.81 E-value=0.00053 Score=61.88 Aligned_cols=140 Identities=19% Similarity=0.110 Sum_probs=70.3
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCC
Q 019340 139 AMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQFNLGISYLQAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRG 218 (342)
Q Consensus 139 a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~ 218 (342)
-.-.-|..|+..|++..|+..|++|+..-+ |. ..-+.++. +.+..--..++.||+.||..
T Consensus 210 ~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~----------~~--~~~~~ee~-----~~~~~~k~~~~lNlA~c~lK--- 269 (397)
T KOG0543|consen 210 RKKERGNVLFKEGKFKLAKKRYERAVSFLE----------YR--RSFDEEEQ-----KKAEALKLACHLNLAACYLK--- 269 (397)
T ss_pred HHHHhhhHHHhhchHHHHHHHHHHHHHHhh----------cc--ccCCHHHH-----HHHHHHHHHHhhHHHHHHHh---
Confidence 345678899999999999999999885310 00 00011000 00011112344555555554
Q ss_pred CCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhhcCCHH-H
Q 019340 219 VDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMM-K 293 (342)
Q Consensus 219 ~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~-~ 293 (342)
.+++.+|+.+..+++.. ++..|+|.-|.++.. .| +++.|+..|+++++. ++..+...|..+-....++. +
T Consensus 270 -l~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~-~~---e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~k 344 (397)
T KOG0543|consen 270 -LKEYKEAIESCNKVLELDPNNVKALYRRGQALLA-LG---EYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEK 344 (397)
T ss_pred -hhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHh-hc---cHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555544 355555555555533 22 555555555555543 33444444444444433322 2
Q ss_pred HHHHHHHHHH
Q 019340 294 AVVYLELATR 303 (342)
Q Consensus 294 A~~~~~~a~~ 303 (342)
..+.|.+...
T Consensus 345 ekk~y~~mF~ 354 (397)
T KOG0543|consen 345 EKKMYANMFA 354 (397)
T ss_pred HHHHHHHHhh
Confidence 3445554443
No 184
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.80 E-value=0.00059 Score=62.91 Aligned_cols=108 Identities=20% Similarity=0.116 Sum_probs=67.8
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHH
Q 019340 119 KNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQ 196 (342)
Q Consensus 119 ~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~ 196 (342)
++++.|+.+|++..+.. +++...+++++...++-.+|+..+.+++.. .+.+.+...+..+. ..++++.|+...++
T Consensus 183 ~~~~~ai~lle~L~~~~-pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl--~k~~~~lAL~iAk~ 259 (395)
T PF09295_consen 183 QRYDEAIELLEKLRERD-PEVAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLL--SKKKYELALEIAKK 259 (395)
T ss_pred ccHHHHHHHHHHHHhcC-CcHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH--hcCCHHHHHHHHHH
Confidence 55666777766655533 455556666666666666777777776654 34555555566666 56666777777777
Q ss_pred HHHc--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Q 019340 197 ASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRA 233 (342)
Q Consensus 197 a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A 233 (342)
+++. .+.+.|+.|+.||.. .++++.|+..++.+
T Consensus 260 av~lsP~~f~~W~~La~~Yi~----~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 260 AVELSPSEFETWYQLAECYIQ----LGDFENALLALNSC 294 (395)
T ss_pred HHHhCchhHHHHHHHHHHHHh----cCCHHHHHHHHhcC
Confidence 6653 456667777777766 55666666555543
No 185
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.80 E-value=0.00047 Score=52.34 Aligned_cols=96 Identities=22% Similarity=0.073 Sum_probs=75.8
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHcC------CHHHHHHHHHHHh
Q 019340 143 AGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIAG------HVRAQYQLALCLH 214 (342)
Q Consensus 143 lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~~------~~~a~~~lg~~~~ 214 (342)
-|.+..+.|+.+.|++.|.+++.. ..+.++.|-+..+. -.++.++|+.-+.++++.. -..++..-|.+|.
T Consensus 49 ~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~R--Lq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyR 126 (175)
T KOG4555|consen 49 KAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALR--LQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYR 126 (175)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHH--HcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHH
Confidence 455666889999999999999876 78899999999998 8889999999999998863 1345667777777
Q ss_pred cCCCCCCCHHHHHHHHHHHHHCCCHHHHHH
Q 019340 215 RGRGVDFNLQEAARWYLRAAEGGYVRAMYN 244 (342)
Q Consensus 215 ~g~~~~~~~~~A~~~~~~A~~~~~~~a~~~ 244 (342)
. .++.+.|..-|..|++.|..-+...
T Consensus 127 l----~g~dd~AR~DFe~AA~LGS~FAr~Q 152 (175)
T KOG4555|consen 127 L----LGNDDAARADFEAAAQLGSKFAREQ 152 (175)
T ss_pred H----hCchHHHHHhHHHHHHhCCHHHHHH
Confidence 6 6677788888888877776655443
No 186
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=97.78 E-value=5.1e-05 Score=45.33 Aligned_cols=35 Identities=40% Similarity=0.708 Sum_probs=20.8
Q ss_pred HHHHHHH--HHHHcCC-CCcccHHHHHHHHHHHHHcCC
Q 019340 240 RAMYNTS--LCYSFGE-GLPLSHRQARKWMKRAADCGH 274 (342)
Q Consensus 240 ~a~~~lg--~~y~~g~-g~~~~~~~A~~~~~~a~~~~~ 274 (342)
.|++.|| .+|..|. |+++|.++|+.||++|++.||
T Consensus 2 ~A~~~lg~~~~~~~g~~g~~~d~~~A~~~~~~Aa~~g~ 39 (39)
T PF08238_consen 2 EAQYNLGMYYMYYNGKGGVPKDYEKAFKWYEKAAEQGH 39 (39)
T ss_dssp HHHHHHHHHHHHHHTSTSSCHHHHHHHHHHHHHHHTT-
T ss_pred hHHHHHHHHHhhhhccCCccccccchHHHHHHHHHccC
Confidence 4566666 5555665 566666666666666666543
No 187
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=97.77 E-value=3.9e-05 Score=45.86 Aligned_cols=36 Identities=31% Similarity=0.493 Sum_probs=32.1
Q ss_pred HHHHHHHH--HHHHcCC-CCcCCHHHHHHHHHHHHhCCC
Q 019340 101 AMVLLRWG--KRFKHGR-GVRKNLDKALDSFLKGAARGS 136 (342)
Q Consensus 101 a~a~~~lg--~~y~~g~-g~~~~~~~A~~~~~~A~~~~~ 136 (342)
|.+++.|| .+|..|. |+++|.++|+.||++|++.||
T Consensus 1 a~A~~~lg~~~~~~~g~~g~~~d~~~A~~~~~~Aa~~g~ 39 (39)
T PF08238_consen 1 AEAQYNLGMYYMYYNGKGGVPKDYEKAFKWYEKAAEQGH 39 (39)
T ss_dssp HHHHHHHHHHHHHHHTSTSSCHHHHHHHHHHHHHHHTT-
T ss_pred ChHHHHHHHHHhhhhccCCccccccchHHHHHHHHHccC
Confidence 56889999 8889999 899999999999999999875
No 188
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.76 E-value=6.9e-05 Score=50.89 Aligned_cols=48 Identities=17% Similarity=0.156 Sum_probs=32.4
Q ss_pred CCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC
Q 019340 119 KNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL 166 (342)
Q Consensus 119 ~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~ 166 (342)
+++++|+.+|++++.. ++..+.+.+|.+|...|++++|...++++...
T Consensus 5 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 5 GDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp THHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred cCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5677777777777664 46677777777777777777777777776654
No 189
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.75 E-value=0.0095 Score=56.91 Aligned_cols=207 Identities=12% Similarity=0.051 Sum_probs=127.5
Q ss_pred cCCHHHHHHHHHHHHhC-------C-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCC------HHHHHHHHHHHHcCC
Q 019340 118 RKNLDKALDSFLKGAAR-------G-STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGD------PAGQFNLGISYLQAQ 183 (342)
Q Consensus 118 ~~~~~~A~~~~~~A~~~-------~-~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~------~~a~~~Lg~~~~~g~ 183 (342)
+++..+-+..|..|+.. | ....+..+|.+|...|+.+.|...|++|..-.. ...|.+-|..-. .
T Consensus 360 e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemEl--r 437 (835)
T KOG2047|consen 360 EGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMEL--R 437 (835)
T ss_pred cCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHH--h
Confidence 46677888888888874 3 335677888899888999999999999886532 345566665555 6
Q ss_pred ccCHHHHHHHHHHHHHc-CC-------------------HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHH
Q 019340 184 PANAEEAVKLLYQASIA-GH-------------------VRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRA 241 (342)
Q Consensus 184 ~~~~~~A~~~~~~a~~~-~~-------------------~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~--~~~~a 241 (342)
.++++.|+.+.++|... .. ...|..++..-+. .+-++.....|.+.+++ -.|..
T Consensus 438 h~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs----~gtfestk~vYdriidLriaTPqi 513 (835)
T KOG2047|consen 438 HENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEES----LGTFESTKAVYDRIIDLRIATPQI 513 (835)
T ss_pred hhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHH----hccHHHHHHHHHHHHHHhcCCHHH
Confidence 77888888888887541 11 1222223332222 33566777778887776 46667
Q ss_pred HHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHH-------hhhcCCHHHHHHHHHHHHHcCcHHHHHHHH
Q 019340 242 MYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHGLG-------LFTEGEMMKAVVYLELATRAGETAADHVKN 314 (342)
Q Consensus 242 ~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~-------~~~~~~~~~A~~~~~~a~~~~~~~a~~~~~ 314 (342)
-.|.|..+.. .+-++++.+.|++.+..=..+..+.+=.. -+.....+.|...|++|++..++.....+=
T Consensus 514 i~NyAmfLEe----h~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiy 589 (835)
T KOG2047|consen 514 IINYAMFLEE----HKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIY 589 (835)
T ss_pred HHHHHHHHHh----hHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 7777777755 33678888888888776222222111111 223447888888888888876665544333
Q ss_pred HHHhhc--ChhcHHHHHHHHHh
Q 019340 315 VILQQL--SATSRDRAMLVVDS 334 (342)
Q Consensus 315 ~~~~~~--~~~~~~~a~~~~~~ 334 (342)
+++..+ .-|-...|+.++++
T Consensus 590 LlYA~lEEe~GLar~amsiyer 611 (835)
T KOG2047|consen 590 LLYAKLEEEHGLARHAMSIYER 611 (835)
T ss_pred HHHHHHHHHhhHHHHHHHHHHH
Confidence 333333 11333444444444
No 190
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.73 E-value=0.0012 Score=60.81 Aligned_cols=94 Identities=21% Similarity=0.165 Sum_probs=43.0
Q ss_pred cCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCCCCHHHH
Q 019340 149 EMDKKEAAISLYRQAAVLGDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEA 226 (342)
Q Consensus 149 ~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A 226 (342)
..++++.|+.++++..+.+ |++...|+.++. ..++..+|++.+.+++.. .+.+.+...+.++.. .++++.|
T Consensus 181 ~t~~~~~ai~lle~L~~~~-pev~~~LA~v~l--~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~----k~~~~lA 253 (395)
T PF09295_consen 181 LTQRYDEAIELLEKLRERD-PEVAVLLARVYL--LMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS----KKKYELA 253 (395)
T ss_pred hcccHHHHHHHHHHHHhcC-CcHHHHHHHHHH--hcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh----cCCHHHH
Confidence 3455555555555544433 445555555555 334445555555555542 233444444444443 3334444
Q ss_pred HHHHHHHHHC--CCHHHHHHHHHHH
Q 019340 227 ARWYLRAAEG--GYVRAMYNTSLCY 249 (342)
Q Consensus 227 ~~~~~~A~~~--~~~~a~~~lg~~y 249 (342)
+...++|++. .+...|+.|+.+|
T Consensus 254 L~iAk~av~lsP~~f~~W~~La~~Y 278 (395)
T PF09295_consen 254 LEIAKKAVELSPSEFETWYQLAECY 278 (395)
T ss_pred HHHHHHHHHhCchhHHHHHHHHHHH
Confidence 4444444433 2333444444444
No 191
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.72 E-value=8.7e-05 Score=50.39 Aligned_cols=61 Identities=25% Similarity=0.270 Sum_probs=42.6
Q ss_pred hcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHcC--CHHHHHHHH
Q 019340 148 WEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIAG--HVRAQYQLA 210 (342)
Q Consensus 148 ~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~~--~~~a~~~lg 210 (342)
...|++++|+..|++++.. +++++.+.+|.+|. ..|++++|..++++++... ++..+..++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~--~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYL--KQGQYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHH--HTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 3567888888888887643 77888888888888 7778888888888776542 355554444
No 192
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.70 E-value=0.013 Score=47.54 Aligned_cols=126 Identities=13% Similarity=-0.007 Sum_probs=89.7
Q ss_pred CCHHHHHHHHHHHHhCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC---CCHHHHHHHHHHHHcCCccCHHHHHHHH
Q 019340 119 KNLDKALDSFLKGAARG-STLAMVDAGLMYWEMDKKEAAISLYRQAAVL---GDPAGQFNLGISYLQAQPANAEEAVKLL 194 (342)
Q Consensus 119 ~~~~~A~~~~~~A~~~~-~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~Lg~~~~~g~~~~~~~A~~~~ 194 (342)
-|++..+.-..+.++.- ...-.+.||....+.|++.+|+..|++++.- +++..+..++.+.+ ..+++..|...+
T Consensus 70 ldP~R~~Rea~~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqf--a~~~~A~a~~tL 147 (251)
T COG4700 70 LDPERHLREATEELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQF--AIQEFAAAQQTL 147 (251)
T ss_pred cChhHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHH--hhccHHHHHHHH
Confidence 45555544444444432 2344578889999999999999999998864 78888888888888 888999999999
Q ss_pred HHHHHcC----CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHH
Q 019340 195 YQASIAG----HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG-GYVRAMYNTSLCYS 250 (342)
Q Consensus 195 ~~a~~~~----~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~-~~~~a~~~lg~~y~ 250 (342)
++..+-. .|+....+|..|.- .+.+..|...|+-+++- ..+.+-...+.++.
T Consensus 148 e~l~e~~pa~r~pd~~Ll~aR~laa----~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La 204 (251)
T COG4700 148 EDLMEYNPAFRSPDGHLLFARTLAA----QGKYADAESAFEVAISYYPGPQARIYYAEMLA 204 (251)
T ss_pred HHHhhcCCccCCCCchHHHHHHHHh----cCCchhHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 8887743 56777778888775 34667777777777765 45555555555553
No 193
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.67 E-value=0.00031 Score=48.36 Aligned_cols=53 Identities=25% Similarity=0.252 Sum_probs=26.6
Q ss_pred HHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHH
Q 019340 145 LMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASI 199 (342)
Q Consensus 145 ~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~ 199 (342)
.+|...+++++|++++++++.. +++..++..|.++. ..+++.+|+..|+++++
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~--~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLF--QLGRYEEALEDLERALE 57 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHH--HhccHHHHHHHHHHHHH
Confidence 3444455555555555554433 44445555555555 44555555555555444
No 194
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=97.62 E-value=0.012 Score=48.99 Aligned_cols=199 Identities=13% Similarity=0.043 Sum_probs=128.2
Q ss_pred CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHH
Q 019340 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNL 175 (342)
Q Consensus 100 ~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~L 175 (342)
.+..+|.-|.+|.. .|-..-|.--|.+++.. .-+++..-||.-+...|+++.|.+.|.-..+. +..-+..|-
T Consensus 64 RA~l~fERGvlYDS----lGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNR 139 (297)
T COG4785 64 RAQLLFERGVLYDS----LGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNR 139 (297)
T ss_pred HHHHHHHhcchhhh----hhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcc
Confidence 56677888888877 35566677777777765 47888889999999999999999999999877 556788888
Q ss_pred HHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHH-HHHCC-CHHHHHHHHHHHHc
Q 019340 176 GISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLR-AAEGG-YVRAMYNTSLCYSF 251 (342)
Q Consensus 176 g~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~-A~~~~-~~~a~~~lg~~y~~ 251 (342)
|..+++| |++.-|.+-+.+--+. .+|---. .+|.... .-|+++|..-+.. +-..+ .-..++..+..+ -
T Consensus 140 gi~~YY~--gR~~LAq~d~~~fYQ~D~~DPfR~L---WLYl~E~--k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yL-g 211 (297)
T COG4785 140 GIALYYG--GRYKLAQDDLLAFYQDDPNDPFRSL---WLYLNEQ--KLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYL-G 211 (297)
T ss_pred ceeeeec--CchHhhHHHHHHHHhcCCCChHHHH---HHHHHHh--hCCHHHHHHHHHHHHHhccHhhhhHHHHHHHH-h
Confidence 8887754 5788887777765443 3432211 1232211 5578888876654 44333 233333333322 2
Q ss_pred CCCCcccHHHHHHHHHHHHHc------CCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHcC-cHHHHHHHH
Q 019340 252 GEGLPLSHRQARKWMKRAADC------GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAG-ETAADHVKN 314 (342)
Q Consensus 252 g~g~~~~~~~A~~~~~~a~~~------~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~-~~~a~~~~~ 314 (342)
.. ..+...+-...-+.. --.+.++.||..|...|+.++|...|+.|+..+ +.-..+...
T Consensus 212 ki----S~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannVynfVE~RyA 277 (297)
T COG4785 212 KI----SEETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNVYNFVEHRYA 277 (297)
T ss_pred hc----cHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 12 122222221111111 124678999999999999999999999999875 333333333
No 195
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.62 E-value=0.04 Score=52.83 Aligned_cols=215 Identities=15% Similarity=0.031 Sum_probs=137.2
Q ss_pred CChhHHhhHHHHHHHHHHhCcC---CCH-HHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCCC------HHHHHHHHHH
Q 019340 77 TLPQLRAASLVCKSWNDALRPL---REA-MVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGS------TLAMVDAGLM 146 (342)
Q Consensus 77 ~~~~~~~a~~~~~~~~~~~~~~---~~a-~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~------~~a~~~lg~~ 146 (342)
..++..+-...+....+..... |.. ..+..+|..|.. .++.+.|...|++|..... +..+.+-|.+
T Consensus 359 ~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~----~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waem 434 (835)
T KOG2047|consen 359 YEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYEN----NGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEM 434 (835)
T ss_pred hcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHh----cCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHH
Confidence 3444444444444444443221 221 355668999998 5899999999999998742 4567788888
Q ss_pred HhcCCCHHHHHHHHHHHHhC-CC-------------------HHHHHHHHHHHHcCCccCHHHHHHHHHHHHHcC--CHH
Q 019340 147 YWEMDKKEAAISLYRQAAVL-GD-------------------PAGQFNLGISYLQAQPANAEEAVKLLYQASIAG--HVR 204 (342)
Q Consensus 147 ~~~~~~~~~A~~~~~~a~~~-~~-------------------~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~~--~~~ 204 (342)
-....+++.|+++.++|... .. ...|..++..-. ..|-++.-...|.+.++.. .|.
T Consensus 435 Elrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleE--s~gtfestk~vYdriidLriaTPq 512 (835)
T KOG2047|consen 435 ELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEE--SLGTFESTKAVYDRIIDLRIATPQ 512 (835)
T ss_pred HHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHH--HhccHHHHHHHHHHHHHHhcCCHH
Confidence 88889999999999998733 11 112222233222 3556677777888887764 678
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH------cCCCCcccHHHHHHHHHHHHHcCCHHHH
Q 019340 205 AQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYS------FGEGLPLSHRQARKWMKRAADCGHGKAQ 278 (342)
Q Consensus 205 a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~y~------~g~g~~~~~~~A~~~~~~a~~~~~~~a~ 278 (342)
...|.|.++.. .+-++++++.|++-+.+-.....+.+=..|. .|. ...+.|...|++|++.-++...
T Consensus 513 ii~NyAmfLEe----h~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg---~klEraRdLFEqaL~~Cpp~~a 585 (835)
T KOG2047|consen 513 IIINYAMFLEE----HKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGG---TKLERARDLFEQALDGCPPEHA 585 (835)
T ss_pred HHHHHHHHHHh----hHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHhcCCHHHH
Confidence 88888888876 5568889999988887633222222222222 222 2788899999999986554433
Q ss_pred H----HHHHHhhhcCCHHHHHHHHHHHHHc
Q 019340 279 L----EHGLGLFTEGEMMKAVVYLELATRA 304 (342)
Q Consensus 279 ~----~Lg~~~~~~~~~~~A~~~~~~a~~~ 304 (342)
- ..+.+-..-|--..|+..|++|...
T Consensus 586 KtiyLlYA~lEEe~GLar~amsiyerat~~ 615 (835)
T KOG2047|consen 586 KTIYLLYAKLEEEHGLARHAMSIYERATSA 615 (835)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 2 2333333356666677777776554
No 196
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.57 E-value=0.00047 Score=47.43 Aligned_cols=62 Identities=13% Similarity=0.239 Sum_probs=51.9
Q ss_pred HHHHHcCCCCcCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHH
Q 019340 108 GKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQF 173 (342)
Q Consensus 108 g~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~ 173 (342)
..+|.. .+++++|+..+++++..+ ++..++..|.++...|++++|+..|+++++. +++.+..
T Consensus 2 ~~~~~~----~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~ 67 (73)
T PF13371_consen 2 KQIYLQ----QEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARA 67 (73)
T ss_pred HHHHHh----CCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHH
Confidence 455666 589999999999999974 7888999999999999999999999999876 4444443
No 197
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.55 E-value=0.00017 Score=44.39 Aligned_cols=40 Identities=25% Similarity=0.297 Sum_probs=26.0
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHH
Q 019340 138 LAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGI 177 (342)
Q Consensus 138 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~ 177 (342)
.+++.+|..|...|++++|+.+|+++++. ++++++..||.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 45666677777777777777777776644 66666666654
No 198
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.54 E-value=0.023 Score=48.72 Aligned_cols=220 Identities=11% Similarity=0.013 Sum_probs=145.4
Q ss_pred HHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC-CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 019340 102 MVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR-GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQFNLGISYL 180 (342)
Q Consensus 102 ~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~-~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~ 180 (342)
.-+|.+-..|.. |++.+++..-++.-.. +...-.+-+.+.|...|.+..-+.-...+. ...-.|...++.+..
T Consensus 10 d~LF~iRn~fY~-----Gnyq~~ine~~~~~~~~~~~e~d~y~~raylAlg~~~~~~~eI~~~~-~~~lqAvr~~a~~~~ 83 (299)
T KOG3081|consen 10 DELFNIRNYFYL-----GNYQQCINEAEKFSSSKTDVELDVYMYRAYLALGQYQIVISEIKEGK-ATPLQAVRLLAEYLE 83 (299)
T ss_pred hhHHHHHHHHHh-----hHHHHHHHHHHhhccccchhHHHHHHHHHHHHccccccccccccccc-CChHHHHHHHHHHhh
Confidence 456666666666 4788888777776554 566666667777777766544443332222 233445555555554
Q ss_pred cCCccCHHHHHHHHHH-HHHc-C--CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCc
Q 019340 181 QAQPANAEEAVKLLYQ-ASIA-G--HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLP 256 (342)
Q Consensus 181 ~g~~~~~~~A~~~~~~-a~~~-~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~y~~g~g~~ 256 (342)
.+++.++-+.-... .+.. + +.-.+..-|.+|.+ .+++++|.+...+ .+..++...=-.++.+ .
T Consensus 84 --~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~----~~~~deAl~~~~~---~~~lE~~Al~VqI~lk----~ 150 (299)
T KOG3081|consen 84 --LESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMH----DGDFDEALKALHL---GENLEAAALNVQILLK----M 150 (299)
T ss_pred --CcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhc----CCChHHHHHHHhc---cchHHHHHHHHHHHHH----H
Confidence 44554444444333 3333 2 33344445566766 5689999988877 2233333222233322 2
Q ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHhhh----cCCHHHHHHHHHHHHHcCcHHHHHHHHHHHhhcChhcHHHHHHHH
Q 019340 257 LSHRQARKWMKRAADCGHGKAQLEHGLGLFT----EGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVV 332 (342)
Q Consensus 257 ~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~----~~~~~~A~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~ 332 (342)
...+-|.+-+++..+.++-..+..|+..+.. .+.+.+|+.+|+.-.+.-++......+....++..+++++|+.++
T Consensus 151 ~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL 230 (299)
T KOG3081|consen 151 HRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLL 230 (299)
T ss_pred HHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHH
Confidence 3788889999998888777777777777755 447999999999999988888888899999999999999999999
Q ss_pred HhhhcCCC
Q 019340 333 DSWRAMPS 340 (342)
Q Consensus 333 ~~~~~~~~ 340 (342)
++.+...+
T Consensus 231 ~eaL~kd~ 238 (299)
T KOG3081|consen 231 EEALDKDA 238 (299)
T ss_pred HHHHhccC
Confidence 98876554
No 199
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.53 E-value=0.0017 Score=59.83 Aligned_cols=112 Identities=14% Similarity=0.103 Sum_probs=81.1
Q ss_pred cHHHHHHHHhhCCChhHHhhHHHHHHH-HHHhCc---CC---CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC---
Q 019340 65 PFDVLNKIAASFTLPQLRAASLVCKSW-NDALRP---LR---EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--- 134 (342)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~a~~~~~~~-~~~~~~---~~---~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--- 134 (342)
+...+-+....|..||+.+|..++-.- ....+. .+ .-..+.+||.++.+ .+.+.-+..+|.+|++.
T Consensus 240 ~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~----~~~y~~~~~~F~kAL~N~c~ 315 (696)
T KOG2471|consen 240 SMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQ----LGCYQASSVLFLKALRNSCS 315 (696)
T ss_pred cHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeee----hhhHHHHHHHHHHHHHHHHH
Confidence 445556666678899999987654221 111111 00 11345678877777 57888889999998851
Q ss_pred ----C-------------CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHH
Q 019340 135 ----G-------------STLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYL 180 (342)
Q Consensus 135 ----~-------------~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~ 180 (342)
| .-+..|+.|..|...|++-.|.++|.+++.. .+|..|..|+.|..
T Consensus 316 qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 316 QLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCI 380 (696)
T ss_pred HHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 1 3467899999999999999999999999976 88999999998765
No 200
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.46 E-value=0.019 Score=52.40 Aligned_cols=169 Identities=17% Similarity=0.116 Sum_probs=111.5
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC------CCHHHHHHHHHHHHc-CCccCHHHHHHHHHHHHHc---CCHHH
Q 019340 136 STLAMVDAGLMYWEMDKKEAAISLYRQAAVL------GDPAGQFNLGISYLQ-AQPANAEEAVKLLYQASIA---GHVRA 205 (342)
Q Consensus 136 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~------~~~~a~~~Lg~~~~~-g~~~~~~~A~~~~~~a~~~---~~~~a 205 (342)
+++...++=..|...+|++.-+++.+..-.. ..+...+.+|.++.. ...|+.++|+..+..++.. .+++.
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT 219 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence 4556667777788889999999998886543 456777788888773 3389999999999996654 37899
Q ss_pred HHHHHHHHhcC-----CCCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHc-CCCCcccHHHHHHHH----HHHHHcC-
Q 019340 206 QYQLALCLHRG-----RGVDFNLQEAARWYLRAAEGG-YVRAMYNTSLCYSF-GEGLPLSHRQARKWM----KRAADCG- 273 (342)
Q Consensus 206 ~~~lg~~~~~g-----~~~~~~~~~A~~~~~~A~~~~-~~~a~~~lg~~y~~-g~g~~~~~~~A~~~~----~~a~~~~- 273 (342)
+..+|.+|.+- .......++|+.+|.++.+.. +...-.|++.++.. |.. ..+..+..+.- ....+.+
T Consensus 220 ~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~-~~~~~el~~i~~~l~~llg~kg~ 298 (374)
T PF13281_consen 220 LGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHD-FETSEELRKIGVKLSSLLGRKGS 298 (374)
T ss_pred HHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCc-ccchHHHHHHHHHHHHHHHhhcc
Confidence 99999998642 112345899999999998874 44444566666533 321 11222222222 1112222
Q ss_pred --CHHHH---HHHHHHhhhcCCHHHHHHHHHHHHHcC
Q 019340 274 --HGKAQ---LEHGLGLFTEGEMMKAVVYLELATRAG 305 (342)
Q Consensus 274 --~~~a~---~~Lg~~~~~~~~~~~A~~~~~~a~~~~ 305 (342)
....+ -.++.+..-.||+++|..+++++....
T Consensus 299 ~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 299 LEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred ccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence 22223 334444555899999999999999885
No 201
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.42 E-value=0.026 Score=45.86 Aligned_cols=110 Identities=10% Similarity=0.068 Sum_probs=92.7
Q ss_pred CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC---CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC----CCHHHH
Q 019340 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR---GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL----GDPAGQ 172 (342)
Q Consensus 100 ~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~---~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----~~~~a~ 172 (342)
-..-.+.||..... .|++.+|..+|++++.- +++..+..++...+..+++..|...+++..+- ..|+.+
T Consensus 88 Tvqnr~rLa~al~e----lGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 88 TVQNRYRLANALAE----LGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hHHHHHHHHHHHHH----hhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 34556788888887 58999999999999984 68889999999999999999999999999875 467899
Q ss_pred HHHHHHHHcCCccCHHHHHHHHHHHHHc-CCHHHHHHHHHHHhc
Q 019340 173 FNLGISYLQAQPANAEEAVKLLYQASIA-GHVRAQYQLALCLHR 215 (342)
Q Consensus 173 ~~Lg~~~~~g~~~~~~~A~~~~~~a~~~-~~~~a~~~lg~~~~~ 215 (342)
..+|..|. ..|.+..|...|+.++.- ..+.+-...+.++..
T Consensus 164 Ll~aR~la--a~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~ 205 (251)
T COG4700 164 LLFARTLA--AQGKYADAESAFEVAISYYPGPQARIYYAEMLAK 205 (251)
T ss_pred HHHHHHHH--hcCCchhHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 99999999 888999999999998875 456666666666654
No 202
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.39 E-value=0.00038 Score=40.04 Aligned_cols=33 Identities=21% Similarity=0.279 Sum_probs=28.0
Q ss_pred HHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCcH
Q 019340 275 GKAQLEHGLGLFTEGEMMKAVVYLELATRAGET 307 (342)
Q Consensus 275 ~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~ 307 (342)
+.+++++|.+|...|++++|+.+|++|+++++.
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 467899999999999999999999999988764
No 203
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.34 E-value=0.053 Score=46.04 Aligned_cols=93 Identities=23% Similarity=0.344 Sum_probs=49.4
Q ss_pred HHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC-CC-------HHHHHHHHHHHhcCCCHHHHHHHHHHHHhC----CCHH
Q 019340 103 VLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR-GS-------TLAMVDAGLMYWEMDKKEAAISLYRQAAVL----GDPA 170 (342)
Q Consensus 103 a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~-~~-------~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----~~~~ 170 (342)
.+..-+.+|.. .+++++|-..+.+|++- .+ +.++-..+.+..+...+.+++.+|++|... |.|+
T Consensus 33 ~yekAAvafRn----Ak~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~Gspd 108 (308)
T KOG1585|consen 33 LYEKAAVAFRN----AKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPD 108 (308)
T ss_pred HHHHHHHHHHh----hccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcc
Confidence 34444455555 46777777777777642 11 223334444455556777777777777533 4433
Q ss_pred -HHHHHHHHHHcCCccCHHHHHHHHHHHHH
Q 019340 171 -GQFNLGISYLQAQPANAEEAVKLLYQASI 199 (342)
Q Consensus 171 -a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~ 199 (342)
|-..|+.+-.--+..++++|+..|++++.
T Consensus 109 tAAmaleKAak~lenv~Pd~AlqlYqrala 138 (308)
T KOG1585|consen 109 TAAMALEKAAKALENVKPDDALQLYQRALA 138 (308)
T ss_pred hHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Confidence 22223332221135567777777777554
No 204
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.33 E-value=0.038 Score=46.88 Aligned_cols=191 Identities=17% Similarity=0.093 Sum_probs=101.8
Q ss_pred cCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC-CC-------HHHHHHHHHHHHcCCccCHHH
Q 019340 118 RKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL-GD-------PAGQFNLGISYLQAQPANAEE 189 (342)
Q Consensus 118 ~~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-~~-------~~a~~~Lg~~~~~g~~~~~~~ 189 (342)
+.|++-|...|.+|+ ..|...+++++|...+++|++- .+ +.++-..+.+.. +.....+
T Consensus 24 kad~dgaas~yekAA------------vafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLak--e~~klsE 89 (308)
T KOG1585|consen 24 KADWDGAASLYEKAA------------VAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAK--ELSKLSE 89 (308)
T ss_pred CCCchhhHHHHHHHH------------HHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH--HHHHhHH
Confidence 356777777776654 3566667777777777777632 11 233334444444 5667777
Q ss_pred HHHHHHHHHH----cCCHH----HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC---C--CHHH---HHHHHHHHHcCC
Q 019340 190 AVKLLYQASI----AGHVR----AQYQLALCLHRGRGVDFNLQEAARWYLRAAEG---G--YVRA---MYNTSLCYSFGE 253 (342)
Q Consensus 190 A~~~~~~a~~----~~~~~----a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~---~--~~~a---~~~lg~~y~~g~ 253 (342)
+..+|+|+.. .|.++ +.-.-|.+.. ..++++|+.+|++++.. + .-.+ +-..++++.++.
T Consensus 90 vvdl~eKAs~lY~E~GspdtAAmaleKAak~le-----nv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~ 164 (308)
T KOG1585|consen 90 VVDLYEKASELYVECGSPDTAAMALEKAAKALE-----NVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLE 164 (308)
T ss_pred HHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhh-----cCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhH
Confidence 7888887754 34332 2233344443 45778888888877652 1 2233 233444454432
Q ss_pred CCcccHHHHHHHHHHHHH----c---CC-HHHHHHHHHHhhhcCCHHHHHHHHHHHHHc----CcHHHHHHHHHHHhhcC
Q 019340 254 GLPLSHRQARKWMKRAAD----C---GH-GKAQLEHGLGLFTEGEMMKAVVYLELATRA----GETAADHVKNVILQQLS 321 (342)
Q Consensus 254 g~~~~~~~A~~~~~~a~~----~---~~-~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~~~~~~~~~~ 321 (342)
.+.+|...+.+-.. . ++ -.++..+..+|....|+..|..+|+.-... ++.+... +..++..-.
T Consensus 165 ----kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~-lenLL~ayd 239 (308)
T KOG1585|consen 165 ----KFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRS-LENLLTAYD 239 (308)
T ss_pred ----HhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHH-HHHHHHHhc
Confidence 55555555544211 1 11 233444445556666788888887775543 2333333 233333344
Q ss_pred hhcHHHHHHHH
Q 019340 322 ATSRDRAMLVV 332 (342)
Q Consensus 322 ~~~~~~a~~~~ 332 (342)
.++.++...++
T Consensus 240 ~gD~E~~~kvl 250 (308)
T KOG1585|consen 240 EGDIEEIKKVL 250 (308)
T ss_pred cCCHHHHHHHH
Confidence 55555554443
No 205
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.29 E-value=0.0004 Score=39.86 Aligned_cols=33 Identities=21% Similarity=0.268 Sum_probs=27.6
Q ss_pred HHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCcH
Q 019340 275 GKAQLEHGLGLFTEGEMMKAVVYLELATRAGET 307 (342)
Q Consensus 275 ~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~ 307 (342)
+.+++.+|.+|...|++++|+.+|++++++.+.
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 467889999999999999999999999987653
No 206
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.28 E-value=0.0079 Score=46.90 Aligned_cols=76 Identities=21% Similarity=0.302 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC---C--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CC---HH
Q 019340 101 AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR---G--STLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GD---PA 170 (342)
Q Consensus 101 a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~---~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~---~~ 170 (342)
+..+|.-|.-... .+++++|++.|+..-.. | -..+.+.||..|...+++++|+..+++-+++ .+ +.
T Consensus 10 ~~~ly~~a~~~l~----~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdY 85 (142)
T PF13512_consen 10 PQELYQEAQEALQ----KGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDY 85 (142)
T ss_pred HHHHHHHHHHHHH----hCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccH
Confidence 4455555655555 46777777777766554 1 3456677777777777777777777776655 22 45
Q ss_pred HHHHHHHHHH
Q 019340 171 GQFNLGISYL 180 (342)
Q Consensus 171 a~~~Lg~~~~ 180 (342)
++|..|.+++
T Consensus 86 a~Y~~gL~~~ 95 (142)
T PF13512_consen 86 AYYMRGLSYY 95 (142)
T ss_pred HHHHHHHHHH
Confidence 6666666665
No 207
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.25 E-value=0.00076 Score=41.46 Aligned_cols=41 Identities=29% Similarity=0.307 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHcCCccCHHHHHHHHHHHHH--cCCHHHHHHHHH
Q 019340 169 PAGQFNLGISYLQAQPANAEEAVKLLYQASI--AGHVRAQYQLAL 211 (342)
Q Consensus 169 ~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~ 211 (342)
|++++.||.+|. ..|++++|+++|+++++ +++++++..||.
T Consensus 1 p~~~~~la~~~~--~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 1 PAAWLALARAYR--RLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHH--HcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 456778888888 78888888888888766 467888877765
No 208
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=97.22 E-value=0.069 Score=55.57 Aligned_cols=188 Identities=14% Similarity=0.050 Sum_probs=117.6
Q ss_pred CCHHHHHHHHHHHHhC-C---------CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCC-HHHHHHHHHHHHcCCccCH
Q 019340 119 KNLDKALDSFLKGAAR-G---------STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGD-PAGQFNLGISYLQAQPANA 187 (342)
Q Consensus 119 ~~~~~A~~~~~~A~~~-~---------~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~-~~a~~~Lg~~~~~g~~~~~ 187 (342)
.+.++|.+.+++|+.. + -.-|++||=..| |.-+.-.+.|++|++--+ -..+..|..+|. ....+
T Consensus 1472 sEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~y---G~eesl~kVFeRAcqycd~~~V~~~L~~iy~--k~ek~ 1546 (1710)
T KOG1070|consen 1472 SEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAY---GTEESLKKVFERACQYCDAYTVHLKLLGIYE--KSEKN 1546 (1710)
T ss_pred hhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhh---CcHHHHHHHHHHHHHhcchHHHHHHHHHHHH--Hhhcc
Confidence 5777888888887763 1 112223333222 566666777888877744 456666777777 66677
Q ss_pred HHHHHHHHHHHHc-C-CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCcccHHH
Q 019340 188 EEAVKLLYQASIA-G-HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG----GYVRAMYNTSLCYSFGEGLPLSHRQ 261 (342)
Q Consensus 188 ~~A~~~~~~a~~~-~-~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~----~~~~a~~~lg~~y~~g~g~~~~~~~ 261 (342)
++|.++|+..++. + ....|..+|..+.. ..+-+.|...+.+|+.- .+..---..+.+- ...| |.+.
T Consensus 1547 ~~A~ell~~m~KKF~q~~~vW~~y~~fLl~----~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE-Fk~G---DaeR 1618 (1710)
T KOG1070|consen 1547 DEADELLRLMLKKFGQTRKVWIMYADFLLR----QNEAEAARELLKRALKSLPKQEHVEFISKFAQLE-FKYG---DAER 1618 (1710)
T ss_pred hhHHHHHHHHHHHhcchhhHHHHHHHHHhc----ccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH-hhcC---Cchh
Confidence 7888888877765 3 56777777777765 34456677777777764 2333333444443 2334 7777
Q ss_pred HHHHHHHHHHcC--CHHHHHHHHHHhhhcCCHHHHHHHHHHHHHcC--cHHHHHHHHHHHhh
Q 019340 262 ARKWMKRAADCG--HGKAQLEHGLGLFTEGEMMKAVVYLELATRAG--ETAADHVKNVILQQ 319 (342)
Q Consensus 262 A~~~~~~a~~~~--~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~~~~~~~~ 319 (342)
+...|+-.+... ..+-|.-+...-...|+.+..+..|++++.++ +..+.+.....+.+
T Consensus 1619 GRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLey 1680 (1710)
T KOG1070|consen 1619 GRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEY 1680 (1710)
T ss_pred hHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHH
Confidence 777777776554 24455555555566778888888888888775 44555554444443
No 209
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.13 E-value=0.014 Score=45.60 Aligned_cols=79 Identities=16% Similarity=0.084 Sum_probs=64.5
Q ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC-----CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHcC-----CHH
Q 019340 135 GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL-----GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIAG-----HVR 204 (342)
Q Consensus 135 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-----~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~~-----~~~ 204 (342)
..+..++.-|...+..|++++|++.|+..-.. --..+...|+.+|+ ..+++++|+..+++-+++. -+-
T Consensus 8 ~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy--~~~~y~~A~a~~~rFirLhP~hp~vdY 85 (142)
T PF13512_consen 8 KSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYY--KQGDYEEAIAAYDRFIRLHPTHPNVDY 85 (142)
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHH--HccCHHHHHHHHHHHHHhCCCCCCccH
Confidence 35677888888888999999999999988765 23678999999999 8899999999999988742 456
Q ss_pred HHHHHHHHHhc
Q 019340 205 AQYQLALCLHR 215 (342)
Q Consensus 205 a~~~lg~~~~~ 215 (342)
++|..|.++..
T Consensus 86 a~Y~~gL~~~~ 96 (142)
T PF13512_consen 86 AYYMRGLSYYE 96 (142)
T ss_pred HHHHHHHHHHH
Confidence 78888888764
No 210
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.08 E-value=0.074 Score=50.76 Aligned_cols=147 Identities=16% Similarity=0.109 Sum_probs=104.7
Q ss_pred CCCHHHHHHHHHHHHhCCCHHH-H-------HHHHHHHHcCC---ccCHHHHHHHHHHHHH--cCCHHHHHHHHHHHhcC
Q 019340 150 MDKKEAAISLYRQAAVLGDPAG-Q-------FNLGISYLQAQ---PANAEEAVKLLYQASI--AGHVRAQYQLALCLHRG 216 (342)
Q Consensus 150 ~~~~~~A~~~~~~a~~~~~~~a-~-------~~Lg~~~~~g~---~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g 216 (342)
.||-+.++..+.++.+.++..+ + |+++...+.+. ..+.+.+.+.+....+ ++.+--.+.-|.++..
T Consensus 201 ~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~- 279 (468)
T PF10300_consen 201 SGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEGRLERL- 279 (468)
T ss_pred CCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-
Confidence 4899999999999887754322 1 11222222233 5577788888887776 5666667778888876
Q ss_pred CCCCCCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCC---HHHHHHHHHHhhh
Q 019340 217 RGVDFNLQEAARWYLRAAEGG------YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGH---GKAQLEHGLGLFT 287 (342)
Q Consensus 217 ~~~~~~~~~A~~~~~~A~~~~------~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~---~~a~~~Lg~~~~~ 287 (342)
.+|.++|+++|++++... ..-..+.+++++.. ..++++|..+|.+..+... +--.|..|.++..
T Consensus 280 ---~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~----~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~ 352 (468)
T PF10300_consen 280 ---KGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMF----QHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLM 352 (468)
T ss_pred ---hcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHH----HchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 778999999999887532 34467888888865 4499999999999988644 3334678888888
Q ss_pred cCCH-------HHHHHHHHHHHHc
Q 019340 288 EGEM-------MKAVVYLELATRA 304 (342)
Q Consensus 288 ~~~~-------~~A~~~~~~a~~~ 304 (342)
.++. ++|..+|+++-..
T Consensus 353 l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 353 LGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred hccchhhhhhHHHHHHHHHHHHHH
Confidence 8888 8888888877543
No 211
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=97.05 E-value=0.26 Score=51.57 Aligned_cols=191 Identities=13% Similarity=0.050 Sum_probs=141.5
Q ss_pred HHHHHHHhhCCChhHHhhHHHHHHHHHHhC------cCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCCCH-HH
Q 019340 67 DVLNKIAASFTLPQLRAASLVCKSWNDALR------PLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGST-LA 139 (342)
Q Consensus 67 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~------~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~-~a 139 (342)
..+.-.+.++..++...|..+..+++.... ..+-+.|+++|=.+| |.-+.-.+.|++|++..++ ..
T Consensus 1460 ~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~y-------G~eesl~kVFeRAcqycd~~~V 1532 (1710)
T KOG1070|consen 1460 LWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAY-------GTEESLKKVFERACQYCDAYTV 1532 (1710)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhh-------CcHHHHHHHHHHHHHhcchHHH
Confidence 344555556788999999888888877652 123356777776666 5677788999999997654 56
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhC-C-CHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc----CCHHHHHHHHHHH
Q 019340 140 MVDAGLMYWEMDKKEAAISLYRQAAVL-G-DPAGQFNLGISYLQAQPANAEEAVKLLYQASIA----GHVRAQYQLALCL 213 (342)
Q Consensus 140 ~~~lg~~~~~~~~~~~A~~~~~~a~~~-~-~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~ 213 (342)
+..|..+|.....+++|.++|+.-++. + ....|..+|..++ ...+-+.|...+.+|++. .+.+.....+.+-
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl--~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLL--RQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHh--cccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 779999999999999999999999977 4 6889999999988 666778888999999873 3566666666665
Q ss_pred hcCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCC
Q 019340 214 HRGRGVDFNLQEAARWYLRAAEGG--YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGH 274 (342)
Q Consensus 214 ~~g~~~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~ 274 (342)
+. .+|.+.+...|+-.+... -.+.|.-+..+- .+.| +.+.....|++++..+-
T Consensus 1611 Fk----~GDaeRGRtlfEgll~ayPKRtDlW~VYid~e-ik~~---~~~~vR~lfeRvi~l~l 1665 (1710)
T KOG1070|consen 1611 FK----YGDAERGRTLFEGLLSAYPKRTDLWSVYIDME-IKHG---DIKYVRDLFERVIELKL 1665 (1710)
T ss_pred hh----cCCchhhHHHHHHHHhhCccchhHHHHHHHHH-HccC---CHHHHHHHHHHHHhcCC
Confidence 55 567888888888766543 344444444443 2333 88999999999998743
No 212
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.02 E-value=0.14 Score=46.92 Aligned_cols=172 Identities=11% Similarity=0.050 Sum_probs=111.0
Q ss_pred CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC------CCHHHHHHHHHHHhc---CCCHHHHHHHHHHHHhC---C
Q 019340 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR------GSTLAMVDAGLMYWE---MDKKEAAISLYRQAAVL---G 167 (342)
Q Consensus 100 ~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~------~~~~a~~~lg~~~~~---~~~~~~A~~~~~~a~~~---~ 167 (342)
.+...++|=..|.. -+|++.-+.+.+..-.. ..+...+..|.++-+ .||.++|+..+..++.. .
T Consensus 140 s~div~~lllSyRd----iqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~ 215 (374)
T PF13281_consen 140 SPDIVINLLLSYRD----IQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENP 215 (374)
T ss_pred ChhHHHHHHHHhhh----hhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCC
Confidence 34556666667776 58999999998886554 356777888888888 79999999999997654 6
Q ss_pred CHHHHHHHHHHHHc-------CCccCHHHHHHHHHHHHHcC-CHHHHHHHHHHHh-cCCCCCCCHHHHHHHH----HHHH
Q 019340 168 DPAGQFNLGISYLQ-------AQPANAEEAVKLLYQASIAG-HVRAQYQLALCLH-RGRGVDFNLQEAARWY----LRAA 234 (342)
Q Consensus 168 ~~~a~~~Lg~~~~~-------g~~~~~~~A~~~~~~a~~~~-~~~a~~~lg~~~~-~g~~~~~~~~~A~~~~----~~A~ 234 (342)
+++.+..+|.+|.. .+....++|+.+|+++.+.. +.-.--|++.++. .|.... +-.+..+.- ....
T Consensus 216 ~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~-~~~el~~i~~~l~~llg 294 (374)
T PF13281_consen 216 DPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFE-TSEELRKIGVKLSSLLG 294 (374)
T ss_pred ChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCccc-chHHHHHHHHHHHHHHH
Confidence 78999999999973 12446899999999998865 2222235555544 333222 111212211 1222
Q ss_pred HCC---CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCCHHHH
Q 019340 235 EGG---YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQ 278 (342)
Q Consensus 235 ~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~ 278 (342)
+.+ ...-++.+|....-.. ...|+++|.++++++.... +++|
T Consensus 295 ~kg~~~~~~dYWd~ATl~Ea~v-L~~d~~ka~~a~e~~~~l~-~~~W 339 (374)
T PF13281_consen 295 RKGSLEKMQDYWDVATLLEASV-LAGDYEKAIQAAEKAFKLK-PPAW 339 (374)
T ss_pred hhccccccccHHHHHHHHHHHH-HcCCHHHHHHHHHHHhhcC-Ccch
Confidence 222 2333444444443221 1349999999999999875 4444
No 213
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.97 E-value=0.32 Score=45.34 Aligned_cols=245 Identities=14% Similarity=0.059 Sum_probs=138.3
Q ss_pred HhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHH-----HHHHHhCC--CHHHHHHHHHHHhcCCCHH
Q 019340 82 RAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDS-----FLKGAARG--STLAMVDAGLMYWEMDKKE 154 (342)
Q Consensus 82 ~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~-----~~~A~~~~--~~~a~~~lg~~~~~~~~~~ 154 (342)
.+|..+++-.+...+. +.++-+|.-=..+....|...-.++++-. |++-+..+ +.++++..-.+....|+.+
T Consensus 261 ERar~iykyAld~~pk-~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~ 339 (677)
T KOG1915|consen 261 ERARFIYKYALDHIPK-GRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKD 339 (677)
T ss_pred HHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHH
Confidence 3344444444443332 23333333223333333444445555532 34444433 6788888888888889999
Q ss_pred HHHHHHHHHHhCCCHH---------HHHHHHHHHHc-CCccCHHHHHHHHHHHHHcC------CHHHHHHHHHHHhcCCC
Q 019340 155 AAISLYRQAAVLGDPA---------GQFNLGISYLQ-AQPANAEEAVKLLYQASIAG------HVRAQYQLALCLHRGRG 218 (342)
Q Consensus 155 ~A~~~~~~a~~~~~~~---------a~~~Lg~~~~~-g~~~~~~~A~~~~~~a~~~~------~~~a~~~lg~~~~~g~~ 218 (342)
.-.+.|++|+..-.|. .+..+-.+++. -+..|.+.+.+.|+..++.- .+..+...+..-..
T Consensus 340 ~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIR--- 416 (677)
T KOG1915|consen 340 RIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIR--- 416 (677)
T ss_pred HHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHH---
Confidence 9999999998663331 12222233221 13678888888888887742 23444444444433
Q ss_pred CCCCHHHHHHHHHHHHHCCC----HHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCCHH--HHHHHHHHhhhcCCHH
Q 019340 219 VDFNLQEAARWYLRAAEGGY----VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGK--AQLEHGLGLFTEGEMM 292 (342)
Q Consensus 219 ~~~~~~~A~~~~~~A~~~~~----~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~--a~~~Lg~~~~~~~~~~ 292 (342)
..|...|.+.+..|+-.-. ...+..|-.-+ ++++.....|++-++-++.. ++...|.+-...|+.+
T Consensus 417 -q~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL-------~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~Lgdtd 488 (677)
T KOG1915|consen 417 -QLNLTGARKILGNAIGKCPKDKLFKGYIELELQL-------REFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTD 488 (677)
T ss_pred -HcccHHHHHHHHHHhccCCchhHHHHHHHHHHHH-------hhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHH
Confidence 4467777777777664321 12222222222 26777777777777765443 4455566666678888
Q ss_pred HHHHHHHHHHHcCcHHHH--HHHHHHHhhcChhcHHHHHHHHHhhhcC
Q 019340 293 KAVVYLELATRAGETAAD--HVKNVILQQLSATSRDRAMLVVDSWRAM 338 (342)
Q Consensus 293 ~A~~~~~~a~~~~~~~a~--~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 338 (342)
.|...|+.|+...--+.- .-...+--..+.++.+.++.++++++..
T Consensus 489 RaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 489 RARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR 536 (677)
T ss_pred HHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh
Confidence 888888888776532222 2233344445677777788777777654
No 214
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.95 E-value=0.0016 Score=38.03 Aligned_cols=28 Identities=29% Similarity=0.218 Sum_probs=24.1
Q ss_pred HHHHHHHHhhhcCCHHHHHHHHHHHHHc
Q 019340 277 AQLEHGLGLFTEGEMMKAVVYLELATRA 304 (342)
Q Consensus 277 a~~~Lg~~~~~~~~~~~A~~~~~~a~~~ 304 (342)
++.+||.+|...|++++|+.+|++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5789999999999999999999997654
No 215
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.95 E-value=0.21 Score=42.86 Aligned_cols=91 Identities=15% Similarity=0.111 Sum_probs=61.3
Q ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCC-----CHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--C---CHH
Q 019340 135 GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLG-----DPAGQFNLGISYLQAQPANAEEAVKLLYQASIA--G---HVR 204 (342)
Q Consensus 135 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~-----~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~---~~~ 204 (342)
..+.-+++-|...+..|++++|+..|+...... ...++..++.+++ ..+++++|+.+..+-+.. + -.-
T Consensus 32 ~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Y--k~~~y~~A~~~~drFi~lyP~~~n~dY 109 (254)
T COG4105 32 LPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYY--KNGEYDLALAYIDRFIRLYPTHPNADY 109 (254)
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHH--hcccHHHHHHHHHHHHHhCCCCCChhH
Confidence 355566666777777888888888888877541 2567888888888 777888888888886663 2 345
Q ss_pred HHHHHHHHHhcCCC-CCCCHHHHH
Q 019340 205 AQYQLALCLHRGRG-VDFNLQEAA 227 (342)
Q Consensus 205 a~~~lg~~~~~g~~-~~~~~~~A~ 227 (342)
++|..|.++..+.. +..|..-+.
T Consensus 110 ~~YlkgLs~~~~i~~~~rDq~~~~ 133 (254)
T COG4105 110 AYYLKGLSYFFQIDDVTRDQSAAR 133 (254)
T ss_pred HHHHHHHHHhccCCccccCHHHHH
Confidence 67777888776543 234443333
No 216
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.92 E-value=0.0012 Score=38.11 Aligned_cols=31 Identities=16% Similarity=0.202 Sum_probs=25.7
Q ss_pred HHHHHHHc--CCHHHHHHHHHHhhhcCCHHHHH
Q 019340 265 WMKRAADC--GHGKAQLEHGLGLFTEGEMMKAV 295 (342)
Q Consensus 265 ~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~ 295 (342)
+|++|++. +++.++++||.+|...|++++|+
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 36778775 67889999999999999999885
No 217
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.92 E-value=0.22 Score=42.72 Aligned_cols=171 Identities=15% Similarity=0.082 Sum_probs=116.1
Q ss_pred CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC-----CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CC---H
Q 019340 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG-----STLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GD---P 169 (342)
Q Consensus 100 ~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~-----~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~---~ 169 (342)
.+.-+|.-|..-.+ .||+++|+..|+...... ...+++.++..+...+++++|+....+-+.+ ++ .
T Consensus 33 p~~~LY~~g~~~L~----~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d 108 (254)
T COG4105 33 PASELYNEGLTELQ----KGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD 108 (254)
T ss_pred CHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh
Confidence 45667777777777 589999999999988752 4678999999999999999999999998865 33 4
Q ss_pred HHHHHHHHHHHcCC---ccC---HHHHHHHHHHHHHc--C---CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCC
Q 019340 170 AGQFNLGISYLQAQ---PAN---AEEAVKLLYQASIA--G---HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGY 238 (342)
Q Consensus 170 ~a~~~Lg~~~~~g~---~~~---~~~A~~~~~~a~~~--~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~~~ 238 (342)
.++|..|.+++.+. ..| ...|+.-|+..++. + -++|...+-.+ +..+
T Consensus 109 Y~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~------------------~d~L---- 166 (254)
T COG4105 109 YAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKL------------------NDAL---- 166 (254)
T ss_pred HHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHH------------------HHHH----
Confidence 57888888887532 334 34555555555552 2 12333322211 1111
Q ss_pred HHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc-----CCHHHHHHHHHHhhhcCCHHHHHHHHHH
Q 019340 239 VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC-----GHGKAQLEHGLGLFTEGEMMKAVVYLEL 300 (342)
Q Consensus 239 ~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~-----~~~~a~~~Lg~~~~~~~~~~~A~~~~~~ 300 (342)
+.--..+|..|.... .+.-|+..++..++. .-.+++..|..+|...|-.++|...-+-
T Consensus 167 A~~Em~IaryY~kr~----~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~v 229 (254)
T COG4105 167 AGHEMAIARYYLKRG----AYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKV 229 (254)
T ss_pred HHHHHHHHHHHHHhc----ChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHH
Confidence 222345677775522 788888888888875 1256788888888888888887765443
No 218
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.88 E-value=0.056 Score=51.62 Aligned_cols=151 Identities=17% Similarity=0.178 Sum_probs=106.3
Q ss_pred CCCcCCHHHHHHHHHHHHhCCCHHH----H----HHHHHHH---h--cCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHH
Q 019340 115 RGVRKNLDKALDSFLKGAARGSTLA----M----VDAGLMY---W--EMDKKEAAISLYRQAAVL--GDPAGQFNLGISY 179 (342)
Q Consensus 115 ~g~~~~~~~A~~~~~~A~~~~~~~a----~----~~lg~~~---~--~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~ 179 (342)
.|..+|.+.++..+.++.+.++..+ + ++++... . ...+.+.|.+.+...... +.+--.+.-|.++
T Consensus 198 vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~ 277 (468)
T PF10300_consen 198 VGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEGRLE 277 (468)
T ss_pred cCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 3778999999999999998643221 1 1222111 1 346788899999988874 6666777788888
Q ss_pred HcCCccCHHHHHHHHHHHHHcC------CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCC-CHHH--HHHHHHHHH
Q 019340 180 LQAQPANAEEAVKLLYQASIAG------HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG-YVRA--MYNTSLCYS 250 (342)
Q Consensus 180 ~~g~~~~~~~A~~~~~~a~~~~------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~~-~~~a--~~~lg~~y~ 250 (342)
. ..++.++|+.+|++++... ..-.++.+|.|+.. ..|+++|..+|.+..+.. -..+ .|..|.|+.
T Consensus 278 ~--~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~----~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~ 351 (468)
T PF10300_consen 278 R--LKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMF----QHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLL 351 (468)
T ss_pred H--HhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHH----HchHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 8 8999999999999887521 34567889999886 779999999999999874 3333 344555553
Q ss_pred cCC---CCcccHHHHHHHHHHHHH
Q 019340 251 FGE---GLPLSHRQARKWMKRAAD 271 (342)
Q Consensus 251 ~g~---g~~~~~~~A~~~~~~a~~ 271 (342)
.-. +.+...++|..+|+++..
T Consensus 352 ~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 352 MLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred hhccchhhhhhHHHHHHHHHHHHH
Confidence 311 012233888888888865
No 219
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=96.85 E-value=0.0022 Score=36.61 Aligned_cols=29 Identities=28% Similarity=0.386 Sum_probs=17.8
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHhC
Q 019340 138 LAMVDAGLMYWEMDKKEAAISLYRQAAVL 166 (342)
Q Consensus 138 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~ 166 (342)
.+++.+|.+|...|++++|+++|+++++.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 45666666666666666666666666543
No 220
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.84 E-value=0.0011 Score=38.29 Aligned_cols=30 Identities=20% Similarity=0.220 Sum_probs=18.6
Q ss_pred HHHHHhC--CCHHHHHHHHHHHhcCCCHHHHH
Q 019340 128 FLKGAAR--GSTLAMVDAGLMYWEMDKKEAAI 157 (342)
Q Consensus 128 ~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~ 157 (342)
|++|++. +++.++++||.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 5556554 36666666666666666666664
No 221
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=96.80 E-value=0.0026 Score=36.41 Aligned_cols=29 Identities=28% Similarity=0.457 Sum_probs=15.6
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHhC
Q 019340 138 LAMVDAGLMYWEMDKKEAAISLYRQAAVL 166 (342)
Q Consensus 138 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~ 166 (342)
.+++++|.+|...|++++|+..|+++++.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 34555555555555555555555555543
No 222
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.79 E-value=0.0026 Score=37.17 Aligned_cols=26 Identities=35% Similarity=0.491 Sum_probs=18.1
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHH
Q 019340 139 AMVDAGLMYWEMDKKEAAISLYRQAA 164 (342)
Q Consensus 139 a~~~lg~~~~~~~~~~~A~~~~~~a~ 164 (342)
++.+||.+|...|++++|+.+|++++
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35677777777777777777777754
No 223
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=96.77 E-value=0.71 Score=46.26 Aligned_cols=233 Identities=13% Similarity=0.016 Sum_probs=144.5
Q ss_pred CCcHHHHHHHHhhCCChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHH
Q 019340 63 SLPFDVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAM 140 (342)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~ 140 (342)
.++...+.-+...+..+++..|...+....++.++...+.++ -|....+ .+..++|..+++.-... .+...+
T Consensus 7 a~~err~rpi~d~ld~~qfkkal~~~~kllkk~Pn~~~a~vL--kaLsl~r----~gk~~ea~~~Le~~~~~~~~D~~tL 80 (932)
T KOG2053|consen 7 AMSERRLRPIYDLLDSSQFKKALAKLGKLLKKHPNALYAKVL--KALSLFR----LGKGDEALKLLEALYGLKGTDDLTL 80 (932)
T ss_pred ccHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHCCCcHHHHHH--HHHHHHH----hcCchhHHHHHhhhccCCCCchHHH
Confidence 446666777778889999999999999999987765444444 4566666 46778888666654443 366777
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhC-CCHHHHHHHHHHHHcCCccCHH----HHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 019340 141 VDAGLMYWEMDKKEAAISLYRQAAVL-GDPAGQFNLGISYLQAQPANAE----EAVKLLYQASIAGHVRAQYQLALCLHR 215 (342)
Q Consensus 141 ~~lg~~~~~~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~~~~g~~~~~~----~A~~~~~~a~~~~~~~a~~~lg~~~~~ 215 (342)
-.+-.+|...+..++|+.+|++++.. ..-+-++.+-.+|. +.+++. .|++.|+- -+..+--....-.++.+
T Consensus 81 q~l~~~y~d~~~~d~~~~~Ye~~~~~~P~eell~~lFmayv--R~~~yk~qQkaa~~LyK~--~pk~~yyfWsV~Slilq 156 (932)
T KOG2053|consen 81 QFLQNVYRDLGKLDEAVHLYERANQKYPSEELLYHLFMAYV--REKSYKKQQKAALQLYKN--FPKRAYYFWSVISLILQ 156 (932)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHhhCCcHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHh--CCcccchHHHHHHHHHH
Confidence 78899999999999999999999977 44677778888887 544443 34444441 11222222222233333
Q ss_pred CCCC-C-----CCHHHHHHHHHHHHHCC-CHHH--HHHHHHHHHcCCCCcccHHHHHHHHHHH-HHc---CCHHHHHHHH
Q 019340 216 GRGV-D-----FNLQEAARWYLRAAEGG-YVRA--MYNTSLCYSFGEGLPLSHRQARKWMKRA-ADC---GHGKAQLEHG 282 (342)
Q Consensus 216 g~~~-~-----~~~~~A~~~~~~A~~~~-~~~a--~~~lg~~y~~g~g~~~~~~~A~~~~~~a-~~~---~~~~a~~~Lg 282 (342)
+..- + .-..-|....++-++.+ ...+ ...|=..-..+.| .+++|...+..- ++. .+......-+
T Consensus 157 s~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~---k~~eal~~l~~~la~~l~~~~~~l~~~~~ 233 (932)
T KOG2053|consen 157 SIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQG---KYQEALEFLAITLAEKLTSANLYLENKKL 233 (932)
T ss_pred hccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcc---cHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 3211 1 11234555666666554 2222 2222111123333 799999998443 332 2222223445
Q ss_pred HHhhhcCCHHHHHHHHHHHHHcCcHH
Q 019340 283 LGLFTEGEMMKAVVYLELATRAGETA 308 (342)
Q Consensus 283 ~~~~~~~~~~~A~~~~~~a~~~~~~~ 308 (342)
..+...+++.+-...-.++++.++++
T Consensus 234 dllk~l~~w~~l~~l~~~Ll~k~~Dd 259 (932)
T KOG2053|consen 234 DLLKLLNRWQELFELSSRLLEKGNDD 259 (932)
T ss_pred HHHHHhcChHHHHHHHHHHHHhCCcc
Confidence 55666788888888888888887775
No 224
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=96.76 E-value=0.024 Score=45.83 Aligned_cols=26 Identities=19% Similarity=0.125 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHH
Q 019340 291 MMKAVVYLELATRAGETAADHVKNVI 316 (342)
Q Consensus 291 ~~~A~~~~~~a~~~~~~~a~~~~~~~ 316 (342)
+++|..+|++|.+..|.+..++.++-
T Consensus 96 F~kA~~~FqkAv~~~P~ne~Y~ksLe 121 (186)
T PF06552_consen 96 FEKATEYFQKAVDEDPNNELYRKSLE 121 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 55666666666666666666555443
No 225
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.70 E-value=0.38 Score=45.21 Aligned_cols=98 Identities=13% Similarity=0.110 Sum_probs=52.4
Q ss_pred HHHHHHHHHHcCCccCHHHHHHHHHHHHHc----CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC---CCHHHHH
Q 019340 171 GQFNLGISYLQAQPANAEEAVKLLYQASIA----GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG---GYVRAMY 243 (342)
Q Consensus 171 a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~---~~~~a~~ 243 (342)
+...|++|.. ..|+.++|++.|+..++. ++-..+++|-.++.. .+.+.++...+.|--+. ..+..+|
T Consensus 261 ~KrRLAmCar--klGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLe----lq~Yad~q~lL~kYdDi~lpkSAti~Y 334 (539)
T PF04184_consen 261 AKRRLAMCAR--KLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLE----LQAYADVQALLAKYDDISLPKSATICY 334 (539)
T ss_pred hHHHHHHHHH--HhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHh----cCCHHHHHHHHHHhccccCCchHHHHH
Confidence 4445666666 666666666666666543 233456666666665 45566666655554322 1233333
Q ss_pred HHHHHHHcC------------CCCcccHHHHHHHHHHHHHcCC
Q 019340 244 NTSLCYSFG------------EGLPLSHRQARKWMKRAADCGH 274 (342)
Q Consensus 244 ~lg~~y~~g------------~g~~~~~~~A~~~~~~a~~~~~ 274 (342)
.-+.+-.+. .|.......|.+.+++|++.++
T Consensus 335 TaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNP 377 (539)
T PF04184_consen 335 TAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNP 377 (539)
T ss_pred HHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCC
Confidence 333332221 2223345567788888887643
No 226
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=96.70 E-value=0.017 Score=46.67 Aligned_cols=79 Identities=20% Similarity=0.140 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHhC--CCHHHHHHHHHHHhcCC----------CHHHHHHHHHHHH--hCCCHHHHHHHHHHHHc-CC-c-
Q 019340 122 DKALDSFLKGAAR--GSTLAMVDAGLMYWEMD----------KKEAAISLYRQAA--VLGDPAGQFNLGISYLQ-AQ-P- 184 (342)
Q Consensus 122 ~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~----------~~~~A~~~~~~a~--~~~~~~a~~~Lg~~~~~-g~-~- 184 (342)
+.|.+.++..... .+++++++-|..+.+.. -+++|+.-|+.|+ +++..+|+++||.+|.. +. .
T Consensus 8 E~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~ 87 (186)
T PF06552_consen 8 EHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTP 87 (186)
T ss_dssp HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcC
Confidence 4455555554443 35666666666555542 2445555555554 34667888888888763 11 1
Q ss_pred ------cCHHHHHHHHHHHHHc
Q 019340 185 ------ANAEEAVKLLYQASIA 200 (342)
Q Consensus 185 ------~~~~~A~~~~~~a~~~ 200 (342)
.-+++|..+|+++.+.
T Consensus 88 d~~~A~~~F~kA~~~FqkAv~~ 109 (186)
T PF06552_consen 88 DTAEAEEYFEKATEYFQKAVDE 109 (186)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHhc
Confidence 2245555555555443
No 227
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.67 E-value=0.17 Score=43.50 Aligned_cols=114 Identities=16% Similarity=0.116 Sum_probs=72.9
Q ss_pred cCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHh----C----CCHHHHHHHHHHHHcCCccC
Q 019340 118 RKNLDKALDSFLKGAARG---STLAMVDAGLMYWEMDKKEAAISLYRQAAV----L----GDPAGQFNLGISYLQAQPAN 186 (342)
Q Consensus 118 ~~~~~~A~~~~~~A~~~~---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~----~----~~~~a~~~Lg~~~~~g~~~~ 186 (342)
.+.+.-.+..+.+.++.+ ++.....||++-.+.||.+.|..+|++.-+ + +......+.+.+|. ..+|
T Consensus 190 ~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~l--g~nn 267 (366)
T KOG2796|consen 190 MKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHL--GQNN 267 (366)
T ss_pred chhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhhee--cccc
Confidence 356666777777777654 455556777777777777777777774321 1 33445555666666 6677
Q ss_pred HHHHHHHHHHHHHcC--CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCC
Q 019340 187 AEEAVKLLYQASIAG--HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG 237 (342)
Q Consensus 187 ~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~~ 237 (342)
+..|...|.+.+..+ ++.+-++-+.|..+ .++...|++..+.+....
T Consensus 268 ~a~a~r~~~~i~~~D~~~~~a~NnKALcllY----lg~l~DAiK~~e~~~~~~ 316 (366)
T KOG2796|consen 268 FAEAHRFFTEILRMDPRNAVANNNKALCLLY----LGKLKDALKQLEAMVQQD 316 (366)
T ss_pred hHHHHHHHhhccccCCCchhhhchHHHHHHH----HHHHHHHHHHHHHHhccC
Confidence 777777777766554 45566666666665 556777777777766653
No 228
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.56 E-value=0.0044 Score=35.39 Aligned_cols=31 Identities=23% Similarity=0.177 Sum_probs=27.1
Q ss_pred HHHHHHHHHhhhcCCHHHHHHHHHHHHHcCc
Q 019340 276 KAQLEHGLGLFTEGEMMKAVVYLELATRAGE 306 (342)
Q Consensus 276 ~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~ 306 (342)
.+++.+|.+|...|++++|..+|+++++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 5688999999999999999999999988754
No 229
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.42 E-value=0.018 Score=53.40 Aligned_cols=109 Identities=21% Similarity=0.195 Sum_probs=86.9
Q ss_pred CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHh---CC--------CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--
Q 019340 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAA---RG--------STLAMVDAGLMYWEMDKKEAAISLYRQAAVL-- 166 (342)
Q Consensus 100 ~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~---~~--------~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-- 166 (342)
.+++++.-...+.. .||+.+|.+.+...-- .| .--.+.+||-|++..+.+.-++.+|.+|+..
T Consensus 239 s~~~l~LKsq~eY~----~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c 314 (696)
T KOG2471|consen 239 SSMALLLKSQLEYA----HGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSC 314 (696)
T ss_pred CcHHHHHHHHHHHH----hcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHH
Confidence 55666666665555 4799999998876422 22 1124578999999999999999999999841
Q ss_pred ------------------CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHh
Q 019340 167 ------------------GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLALCLH 214 (342)
Q Consensus 167 ------------------~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~ 214 (342)
...+..||.|..|. ..|++..|.++|.+++.. .+|..|..|+.|+.
T Consensus 315 ~qL~~g~~~~~~~tls~nks~eilYNcG~~~L--h~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 315 SQLRNGLKPAKTFTLSQNKSMEILYNCGLLYL--HSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCI 380 (696)
T ss_pred HHHhccCCCCcceehhcccchhhHHhhhHHHH--hcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 23578999999999 889999999999999885 68999999999986
No 230
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=96.25 E-value=0.04 Score=46.68 Aligned_cols=82 Identities=13% Similarity=0.164 Sum_probs=57.5
Q ss_pred cCCHHHHHHHHHHHHhC----C-----CHHHHHHHHHHHhcCCCHHHHHHHHHHHH-------hC--------CCHHHHH
Q 019340 118 RKNLDKALDSFLKGAAR----G-----STLAMVDAGLMYWEMDKKEAAISLYRQAA-------VL--------GDPAGQF 173 (342)
Q Consensus 118 ~~~~~~A~~~~~~A~~~----~-----~~~a~~~lg~~~~~~~~~~~A~~~~~~a~-------~~--------~~~~a~~ 173 (342)
..+.++|++.|..|+-. + -+..++.++.+|...++.+....++++|+ +. +....+|
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~Y 169 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLY 169 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHH
Confidence 67888899888888653 1 13456788999988888555555555554 22 2245677
Q ss_pred HHHHHHHcCCccCHHHHHHHHHHHHHcC
Q 019340 174 NLGISYLQAQPANAEEAVKLLYQASIAG 201 (342)
Q Consensus 174 ~Lg~~~~~g~~~~~~~A~~~~~~a~~~~ 201 (342)
.+|.++. ..|++++|+.||.+.+...
T Consensus 170 LigeL~r--rlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 170 LIGELNR--RLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHH--HhCCHHHHHHHHHHHHcCC
Confidence 7888877 7788888888888877653
No 231
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.17 E-value=0.023 Score=47.99 Aligned_cols=80 Identities=23% Similarity=0.231 Sum_probs=71.6
Q ss_pred cCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHH
Q 019340 118 RKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKL 193 (342)
Q Consensus 118 ~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~ 193 (342)
.+.+..|+..|.+|+..+ .+..+.+-+.+|+..++++....-.++|++. +...++|.||.+.. ....+.+||..
T Consensus 23 ~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l--~s~~~~eaI~~ 100 (284)
T KOG4642|consen 23 PKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLL--QSKGYDEAIKV 100 (284)
T ss_pred hhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHH--hhccccHHHHH
Confidence 588999999999999986 4566779999999999999999999999987 56889999999999 88899999999
Q ss_pred HHHHHH
Q 019340 194 LYQASI 199 (342)
Q Consensus 194 ~~~a~~ 199 (342)
++++..
T Consensus 101 Lqra~s 106 (284)
T KOG4642|consen 101 LQRAYS 106 (284)
T ss_pred HHHHHH
Confidence 999855
No 232
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.16 E-value=0.013 Score=33.42 Aligned_cols=29 Identities=24% Similarity=0.370 Sum_probs=19.3
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHhC
Q 019340 138 LAMVDAGLMYWEMDKKEAAISLYRQAAVL 166 (342)
Q Consensus 138 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~ 166 (342)
.+++.+|.+|...|++++|+.+|+++++.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 45666777777777777777777766643
No 233
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.14 E-value=0.13 Score=42.14 Aligned_cols=93 Identities=22% Similarity=0.104 Sum_probs=56.4
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHhC-CC----HHHHHHHHHHHHcCCccCHHHHHHHHHHHHHcCC-HHHHHHHHHH
Q 019340 139 AMVDAGLMYWEMDKKEAAISLYRQAAVL-GD----PAGQFNLGISYLQAQPANAEEAVKLLYQASIAGH-VRAQYQLALC 212 (342)
Q Consensus 139 a~~~lg~~~~~~~~~~~A~~~~~~a~~~-~~----~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~~~-~~a~~~lg~~ 212 (342)
+.+.++..+.+.+++++|+..++.++.. .| +-+-.+|+.+.. ..+.+++|+..+....+.+. +.....-|.+
T Consensus 91 aaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~--q~~k~D~AL~~L~t~~~~~w~~~~~elrGDi 168 (207)
T COG2976 91 AALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQL--QQKKADAALKTLDTIKEESWAAIVAELRGDI 168 (207)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHH--HhhhHHHHHHHHhccccccHHHHHHHHhhhH
Confidence 3456666677777777777777766644 22 224445666666 66677777766665555442 3334445666
Q ss_pred HhcCCCCCCCHHHHHHHHHHHHHCC
Q 019340 213 LHRGRGVDFNLQEAARWYLRAAEGG 237 (342)
Q Consensus 213 ~~~g~~~~~~~~~A~~~~~~A~~~~ 237 (342)
+.. .+|-++|...|.+|++.+
T Consensus 169 ll~----kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 169 LLA----KGDKQEARAAYEKALESD 189 (207)
T ss_pred HHH----cCchHHHHHHHHHHHHcc
Confidence 665 566777777777777664
No 234
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.10 E-value=0.47 Score=40.96 Aligned_cols=132 Identities=12% Similarity=0.083 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHcCCccCHHHHHHHHHHHHHcC---CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH----C----CC
Q 019340 170 AGQFNLGISYLQAQPANAEEAVKLLYQASIAG---HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAE----G----GY 238 (342)
Q Consensus 170 ~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~----~----~~ 238 (342)
..++.+..++. ..+.+.-.+..+.+.++.+ .+.....||.+-.+ .+|.+-|..+|++.-+ . +.
T Consensus 178 ~Vmy~~~~~ll--G~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ----~GD~k~a~~yf~~vek~~~kL~~~q~~ 251 (366)
T KOG2796|consen 178 RVMYSMANCLL--GMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQ----IGDIKTAEKYFQDVEKVTQKLDGLQGK 251 (366)
T ss_pred HHHHHHHHHHh--cchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHh----cccHHHHHHHHHHHHHHHhhhhccchh
Confidence 46777777777 7888999999999988854 56777788988887 6788888888884432 1 23
Q ss_pred HHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCC--HHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCcHHHHH
Q 019340 239 VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGH--GKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADH 311 (342)
Q Consensus 239 ~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~ 311 (342)
.....+.+.+|. | .+|+..|...|.+.+..++ +.+-++-+.+..-.|+..+|++-.+.+++..|..+..
T Consensus 252 ~~V~~n~a~i~l-g---~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~ 322 (366)
T KOG2796|consen 252 IMVLMNSAFLHL-G---QNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLH 322 (366)
T ss_pred HHHHhhhhhhee-c---ccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchh
Confidence 445666777774 2 4599999999999887754 5666788888888999999999999999887655443
No 235
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=95.96 E-value=0.067 Score=45.30 Aligned_cols=65 Identities=12% Similarity=0.003 Sum_probs=42.1
Q ss_pred HHHHHHHHHHcCCCC----cccHHHHHHHHHHHHHcC--------CHHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCc
Q 019340 241 AMYNTSLCYSFGEGL----PLSHRQARKWMKRAADCG--------HGKAQLEHGLGLFTEGEMMKAVVYLELATRAGE 306 (342)
Q Consensus 241 a~~~lg~~y~~g~g~----~~~~~~A~~~~~~a~~~~--------~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~ 306 (342)
.+..++++|. ..|- ..=..+|+.+|++|.+.. ....++-+|.+....|++++|..||.+.+..+.
T Consensus 120 l~LrlAWlyR-~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 120 LCLRLAWLYR-DLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred HHHHHHHHhh-ccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence 4555666663 3320 011334455555554432 245678999999999999999999999987643
No 236
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=95.90 E-value=0.87 Score=38.24 Aligned_cols=195 Identities=16% Similarity=0.039 Sum_probs=109.3
Q ss_pred cCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCHHHHHHHHHHH--HhCCCHHHHHHHHHHHHcCCccCHHHHHHHHH
Q 019340 118 RKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQA--AVLGDPAGQFNLGISYLQAQPANAEEAVKLLY 195 (342)
Q Consensus 118 ~~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a--~~~~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~ 195 (342)
..+-+.|.-+|++.+ .|-..|-..-|..=|.++ +.+.-|+++..||..+. ..++++-|.+.|.
T Consensus 59 l~~eeRA~l~fERGv-------------lYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~--~a~~fdaa~eaFd 123 (297)
T COG4785 59 LTDEERAQLLFERGV-------------LYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLT--QAGNFDAAYEAFD 123 (297)
T ss_pred CChHHHHHHHHHhcc-------------hhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHH--hcccchHHHHHhh
Confidence 356667777777643 333333333444444444 45578999999999999 8999999999999
Q ss_pred HHHHcC--CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcC
Q 019340 196 QASIAG--HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCG 273 (342)
Q Consensus 196 ~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~ 273 (342)
...+.+ +.-+..|-|..+..|+ .++.|.+-+.+--..+..+-...| ++|..- .+-|+.+|..-+.+-.+..
T Consensus 124 s~~ELDp~y~Ya~lNRgi~~YY~g----R~~LAq~d~~~fYQ~D~~DPfR~L-WLYl~E--~k~dP~~A~tnL~qR~~~~ 196 (297)
T COG4785 124 SVLELDPTYNYAHLNRGIALYYGG----RYKLAQDDLLAFYQDDPNDPFRSL-WLYLNE--QKLDPKQAKTNLKQRAEKS 196 (297)
T ss_pred hHhccCCcchHHHhccceeeeecC----chHhhHHHHHHHHhcCCCChHHHH-HHHHHH--hhCCHHHHHHHHHHHHHhc
Confidence 988764 6677788887777744 566676666655444322222222 233322 1338888887776665553
Q ss_pred CHHHH-HHHHHHhhhcCCHHHHHHHHHHHHHcCcHH-H----HHHHHHHHhhcChhcHHHHHHHHHhh
Q 019340 274 HGKAQ-LEHGLGLFTEGEMMKAVVYLELATRAGETA-A----DHVKNVILQQLSATSRDRAMLVVDSW 335 (342)
Q Consensus 274 ~~~a~-~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~~-a----~~~~~~~~~~~~~~~~~~a~~~~~~~ 335 (342)
+.+-| .++-..|...=..+.++.-...-.+ ++.. | .++.=+.-.++..++.++|..+.+--
T Consensus 197 d~e~WG~~iV~~yLgkiS~e~l~~~~~a~a~-~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLa 263 (297)
T COG4785 197 DKEQWGWNIVEFYLGKISEETLMERLKADAT-DNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLA 263 (297)
T ss_pred cHhhhhHHHHHHHHhhccHHHHHHHHHhhcc-chHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 32222 2222223222222222222222222 1111 1 11222344556778888888877643
No 237
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.69 E-value=0.23 Score=40.80 Aligned_cols=93 Identities=16% Similarity=0.093 Sum_probs=57.0
Q ss_pred HHHHHHHHHHcCCccCHHHHHHHHHHHHHc-C----CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCCH-HHHHH
Q 019340 171 GQFNLGISYLQAQPANAEEAVKLLYQASIA-G----HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYV-RAMYN 244 (342)
Q Consensus 171 a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~-~----~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~~~~-~a~~~ 244 (342)
+...++..+. +.+++++|+..++.++.. . -+-+-.+|+.+... .+.+++|...+....+.+.. .....
T Consensus 91 aaL~lAk~~v--e~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q----~~k~D~AL~~L~t~~~~~w~~~~~el 164 (207)
T COG2976 91 AALELAKAEV--EANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQ----QKKADAALKTLDTIKEESWAAIVAEL 164 (207)
T ss_pred HHHHHHHHHH--hhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHH----hhhHHHHHHHHhccccccHHHHHHHH
Confidence 3444555566 677777777777776643 1 23445567777666 56677777766655544432 23455
Q ss_pred HHHHHHcCCCCcccHHHHHHHHHHHHHcC
Q 019340 245 TSLCYSFGEGLPLSHRQARKWMKRAADCG 273 (342)
Q Consensus 245 lg~~y~~g~g~~~~~~~A~~~~~~a~~~~ 273 (342)
.|.++.. .| |..+|+..|++|+..+
T Consensus 165 rGDill~-kg---~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 165 RGDILLA-KG---DKQEARAAYEKALESD 189 (207)
T ss_pred hhhHHHH-cC---chHHHHHHHHHHHHcc
Confidence 6777754 22 7777777777777763
No 238
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=95.59 E-value=0.79 Score=44.83 Aligned_cols=178 Identities=12% Similarity=0.024 Sum_probs=95.0
Q ss_pred HHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhc----------CCCHHHHHHHHH
Q 019340 92 NDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWE----------MDKKEAAISLYR 161 (342)
Q Consensus 92 ~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~----------~~~~~~A~~~~~ 161 (342)
.+-..+.+++..+-.|+..-.. +-+++.|...|-+..+-.-....-.|+.++.+ -|++++|.+.|-
T Consensus 683 ~qfiEdnPHprLWrllAe~Al~----Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yl 758 (1189)
T KOG2041|consen 683 IQFIEDNPHPRLWRLLAEYALF----KLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYL 758 (1189)
T ss_pred HHHHhcCCchHHHHHHHHHHHH----HHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhh
Confidence 3344557788888888877666 45677777777665543222223344444433 378888888876
Q ss_pred HHHhCCCHHHHHHHHHHHHcCCccCHHHHHHHHHHH----HHcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC-
Q 019340 162 QAAVLGDPAGQFNLGISYLQAQPANAEEAVKLLYQA----SIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG- 236 (342)
Q Consensus 162 ~a~~~~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a----~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~- 236 (342)
.+-..+-+-.+ +. ..+|.-..++.++.. -+.+-..|+.++|..+.. ...+++|.++|.+.-..
T Consensus 759 d~drrDLAiel------r~--klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~----~~~We~A~~yY~~~~~~e 826 (1189)
T KOG2041|consen 759 DADRRDLAIEL------RK--KLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAE----MMEWEEAAKYYSYCGDTE 826 (1189)
T ss_pred ccchhhhhHHH------HH--hhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhccchH
Confidence 55332221111 11 122222222222221 112235677888887776 55678888888776433
Q ss_pred CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH-c-CCHHHHHHHHHHhhhcCCHHHHHHHHHH
Q 019340 237 GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAAD-C-GHGKAQLEHGLGLFTEGEMMKAVVYLEL 300 (342)
Q Consensus 237 ~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~-~-~~~~a~~~Lg~~~~~~~~~~~A~~~~~~ 300 (342)
+..+++|.+- ++++- +..+. . .+.+-+-.+|.++.+.|.-++|...|-+
T Consensus 827 ~~~ecly~le-----------~f~~L----E~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 827 NQIECLYRLE-----------LFGEL----EVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLR 877 (1189)
T ss_pred hHHHHHHHHH-----------hhhhH----HHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHh
Confidence 2333332221 11111 11111 1 3445566778888888888888877654
No 239
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=95.44 E-value=0.024 Score=31.80 Aligned_cols=31 Identities=13% Similarity=0.158 Sum_probs=24.4
Q ss_pred HHHHHHHHHhhhcCCHHHHHHHHHHHHHcCc
Q 019340 276 KAQLEHGLGLFTEGEMMKAVVYLELATRAGE 306 (342)
Q Consensus 276 ~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~ 306 (342)
++++++|.++...|++++|+..|++.++.-|
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 4678888888888888888888888876543
No 240
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=95.38 E-value=0.038 Score=32.91 Aligned_cols=29 Identities=21% Similarity=0.092 Sum_probs=25.1
Q ss_pred HHHHHHHHHhhhcCCHHHHHHHHHHHHHc
Q 019340 276 KAQLEHGLGLFTEGEMMKAVVYLELATRA 304 (342)
Q Consensus 276 ~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~ 304 (342)
.++.+||.+|...|++++|..+++++++.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 56889999999999999999999999864
No 241
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=95.32 E-value=0.27 Score=43.62 Aligned_cols=125 Identities=12% Similarity=-0.080 Sum_probs=64.1
Q ss_pred HHHHHHHHHcCCccCHHHHHHHHHHHHHcC--CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHH
Q 019340 172 QFNLGISYLQAQPANAEEAVKLLYQASIAG--HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSL 247 (342)
Q Consensus 172 ~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~ 247 (342)
|..+..... ..+..+.|...|.++.+.+ ..+.+...|.+-.. +.+|.+.|...|+++++. .+...+.....
T Consensus 4 ~i~~m~~~~--r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~---~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 4 WIQYMRFMR--RTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYY---CNKDPKRARKIFERGLKKFPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHH--HHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHH---TCS-HHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHH--HhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 333334444 3445677777777776543 34556666666322 134555677777777664 34444443333
Q ss_pred HHHcCCCCcccHHHHHHHHHHHHHc-CCH----HHHHHHHHHhhhcCCHHHHHHHHHHHHHcC
Q 019340 248 CYSFGEGLPLSHRQARKWMKRAADC-GHG----KAQLEHGLGLFTEGEMMKAVVYLELATRAG 305 (342)
Q Consensus 248 ~y~~g~g~~~~~~~A~~~~~~a~~~-~~~----~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~ 305 (342)
.+.. .+ |.+.|...|++++.. ... ..|......-...|+.+.....++++.+.-
T Consensus 79 ~l~~-~~---d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~ 137 (280)
T PF05843_consen 79 FLIK-LN---DINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELF 137 (280)
T ss_dssp HHHH-TT----HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHT
T ss_pred HHHH-hC---cHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 3322 22 667777777777654 221 233333333444566776666666666553
No 242
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=95.31 E-value=0.025 Score=31.77 Aligned_cols=27 Identities=15% Similarity=0.348 Sum_probs=16.8
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 019340 139 AMVDAGLMYWEMDKKEAAISLYRQAAV 165 (342)
Q Consensus 139 a~~~lg~~~~~~~~~~~A~~~~~~a~~ 165 (342)
+++.+|.+|...|++++|+..|++.++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 556666666666666666666666554
No 243
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.04 E-value=1.8 Score=40.88 Aligned_cols=178 Identities=17% Similarity=0.071 Sum_probs=101.3
Q ss_pred CCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCccCHHHHHHHHHH
Q 019340 119 KNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQFNLGISYLQAQPANAEEAVKLLYQ 196 (342)
Q Consensus 119 ~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~ 196 (342)
+|+++-++.-++|++.+ .++++.-|+.- ......+|..+|+++++.+... ++........+..-+. ...+
T Consensus 182 Rnp~aRIkaA~eALei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~----lg~s~~~~~~g~~~e~--~~~R 253 (539)
T PF04184_consen 182 RNPQARIKAAKEALEINPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEAS----LGKSQFLQHHGHFWEA--WHRR 253 (539)
T ss_pred CCHHHHHHHHHHHHHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHh----hchhhhhhcccchhhh--hhcc
Confidence 56777777777777653 45565554422 1345677777777776542211 1111000000000000 0000
Q ss_pred HHHcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc
Q 019340 197 ASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG----YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC 272 (342)
Q Consensus 197 a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~~----~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~ 272 (342)
- ..-...+...||.|... .+..++|++.|+..++.. .....++|-.++.. .+.+.++...+.+--+.
T Consensus 254 d-t~~~~y~KrRLAmCark----lGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLe----lq~Yad~q~lL~kYdDi 324 (539)
T PF04184_consen 254 D-TNVLVYAKRRLAMCARK----LGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLE----LQAYADVQALLAKYDDI 324 (539)
T ss_pred c-cchhhhhHHHHHHHHHH----hCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHh----cCCHHHHHHHHHHhccc
Confidence 0 00024556779999886 678999999999988642 44578888888875 44888888888876443
Q ss_pred ---CCHHHHHHHHHHhhh-cCC---------------HHHHHHHHHHHHHcCcHHHHHHH
Q 019340 273 ---GHGKAQLEHGLGLFT-EGE---------------MMKAVVYLELATRAGETAADHVK 313 (342)
Q Consensus 273 ---~~~~a~~~Lg~~~~~-~~~---------------~~~A~~~~~~a~~~~~~~a~~~~ 313 (342)
..+..+|.-+.+-.+ .++ ...|++..++|.+.++--..+++
T Consensus 325 ~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLL 384 (539)
T PF04184_consen 325 SLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLL 384 (539)
T ss_pred cCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhh
Confidence 335555554443322 111 24578889999998765554444
No 244
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=95.01 E-value=0.59 Score=41.44 Aligned_cols=90 Identities=11% Similarity=-0.000 Sum_probs=37.5
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCC
Q 019340 142 DAGLMYWEMDKKEAAISLYRQAAVLG--DPAGQFNLGISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLALCLHRGR 217 (342)
Q Consensus 142 ~lg~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~ 217 (342)
.+.+...+.+..+.|...|.+|.+.+ ....+...|.+-+. ..+|.+.|...|+++++. .+...+.....++..
T Consensus 6 ~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~-~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~-- 82 (280)
T PF05843_consen 6 QYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYY-CNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK-- 82 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHH-TCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH--
T ss_pred HHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH--
Confidence 33344444444555555555555332 23333333333220 233444455555555442 333444333333333
Q ss_pred CCCCCHHHHHHHHHHHHHC
Q 019340 218 GVDFNLQEAARWYLRAAEG 236 (342)
Q Consensus 218 ~~~~~~~~A~~~~~~A~~~ 236 (342)
.+|.+.+...|++++..
T Consensus 83 --~~d~~~aR~lfer~i~~ 99 (280)
T PF05843_consen 83 --LNDINNARALFERAISS 99 (280)
T ss_dssp --TT-HHHHHHHHHHHCCT
T ss_pred --hCcHHHHHHHHHHHHHh
Confidence 34555555555555443
No 245
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=94.72 E-value=0.073 Score=31.60 Aligned_cols=28 Identities=21% Similarity=0.228 Sum_probs=18.8
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 019340 138 LAMVDAGLMYWEMDKKEAAISLYRQAAV 165 (342)
Q Consensus 138 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~ 165 (342)
.++.+||.+|...|++++|+.+++++++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4566777777777777777777777653
No 246
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=94.67 E-value=0.098 Score=46.63 Aligned_cols=91 Identities=14% Similarity=0.035 Sum_probs=75.4
Q ss_pred HHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHH
Q 019340 105 LRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVLG--DPAGQFNLGISYL 180 (342)
Q Consensus 105 ~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~~~ 180 (342)
-.-|.-|.. .+.+++|+++|.+++... ++..+.+.+..|+..+.+..|..=+..|+.++ ...|+..-|.+-.
T Consensus 101 KE~GN~yFK----QgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~ 176 (536)
T KOG4648|consen 101 KERGNTYFK----QGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARE 176 (536)
T ss_pred HHhhhhhhh----ccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 345888877 589999999999998874 77788899999999999999999888888774 4677777787777
Q ss_pred cCCccCHHHHHHHHHHHHHcC
Q 019340 181 QAQPANAEEAVKLLYQASIAG 201 (342)
Q Consensus 181 ~g~~~~~~~A~~~~~~a~~~~ 201 (342)
..|+..+|.+-++.++...
T Consensus 177 --~Lg~~~EAKkD~E~vL~LE 195 (536)
T KOG4648|consen 177 --SLGNNMEAKKDCETVLALE 195 (536)
T ss_pred --HHhhHHHHHHhHHHHHhhC
Confidence 7889999999999987754
No 247
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=94.64 E-value=4.6 Score=40.77 Aligned_cols=179 Identities=18% Similarity=0.105 Sum_probs=109.3
Q ss_pred cCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHH
Q 019340 118 RKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKL 193 (342)
Q Consensus 118 ~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~ 193 (342)
.+++++|+.-..+.... +-..+..--|..+.+.|+.++|..+++..... .|...+-.|-.+|. +.+..++|+.+
T Consensus 22 ~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~--d~~~~d~~~~~ 99 (932)
T KOG2053|consen 22 SSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYR--DLGKLDEAVHL 99 (932)
T ss_pred hHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHH--HHhhhhHHHHH
Confidence 36888999888888875 34455666788889999999999777765433 56777788889999 99999999999
Q ss_pred HHHHHHcC-CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcC-CCCcc-----cHHHHHHHH
Q 019340 194 LYQASIAG-HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFG-EGLPL-----SHRQARKWM 266 (342)
Q Consensus 194 ~~~a~~~~-~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~y~~g-~g~~~-----~~~~A~~~~ 266 (342)
|++++... .-+-.+.+=.+|..-....+.-+-|++.|+-.- ..+.-.+..-.++..+ .+.+. -...|.+..
T Consensus 100 Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~p--k~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~ 177 (932)
T KOG2053|consen 100 YERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFP--KRAYYFWSVISLILQSIFSENELLDPILLALAEKMV 177 (932)
T ss_pred HHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--cccchHHHHHHHHHHhccCCcccccchhHHHHHHHH
Confidence 99999863 345555555566541111223345556665221 1222222222233332 11111 123444555
Q ss_pred HHHHHcC-CHH----HHHHHHHHhhhcCCHHHHHHHHHHH
Q 019340 267 KRAADCG-HGK----AQLEHGLGLFTEGEMMKAVVYLELA 301 (342)
Q Consensus 267 ~~a~~~~-~~~----a~~~Lg~~~~~~~~~~~A~~~~~~a 301 (342)
++.++.+ ... ....+ .++...+.+++|...+..-
T Consensus 178 ~~~l~~~gk~~s~aE~~Lyl-~iL~~~~k~~eal~~l~~~ 216 (932)
T KOG2053|consen 178 QKLLEKKGKIESEAEIILYL-LILELQGKYQEALEFLAIT 216 (932)
T ss_pred HHHhccCCccchHHHHHHHH-HHHHhcccHHHHHHHHHHH
Confidence 5555543 322 22222 3356688999999999543
No 248
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=94.60 E-value=1 Score=35.38 Aligned_cols=59 Identities=19% Similarity=0.091 Sum_probs=40.9
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHH
Q 019340 138 LAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQAS 198 (342)
Q Consensus 138 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~ 198 (342)
.+...++..+...|++++|+.++++++.. -+..++..|-.+|. ..|+...|+..|++..
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~--~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALA--AQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHH--HTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH--HCcCHHHHHHHHHHHH
Confidence 45566777777778888888888887644 55667777777777 7778888888887753
No 249
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.53 E-value=0.95 Score=42.42 Aligned_cols=131 Identities=15% Similarity=0.082 Sum_probs=86.9
Q ss_pred HHHHHHHHHHcCCccCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC----C----
Q 019340 171 GQFNLGISYLQAQPANAEEAVKLLYQASIAG-----HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG----G---- 237 (342)
Q Consensus 171 a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~~-----~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~----~---- 237 (342)
++..++..+....+.+..+++++++...... .+.....||.+++. ..+|.+.|...+++|... +
T Consensus 9 aLlGlAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~---yT~N~elAksHLekA~~i~~~ip~fyd 85 (629)
T KOG2300|consen 9 ALLGLAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLR---YTKNVELAKSHLEKAWLISKSIPSFYD 85 (629)
T ss_pred HHHHHHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHH---HhccHHHHHHHHHHHHHHHcccccHHh
Confidence 3444444454344557788888887766543 23456677766542 267888888888888653 1
Q ss_pred -CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCH----HHHHHHHHHhhhcCCHHHHHHHHHHHHHcCcH
Q 019340 238 -YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHG----KAQLEHGLGLFTEGEMMKAVVYLELATRAGET 307 (342)
Q Consensus 238 -~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~----~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~ 307 (342)
-.++.-.|+.+|..- .+....+...+++|++. +.+ .-.+.|+.++.-..|+..|.+.+....+..++
T Consensus 86 vKf~a~SlLa~lh~~~---~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elLavga~sAd~ 159 (629)
T KOG2300|consen 86 VKFQAASLLAHLHHQL---AQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLAVGAESADH 159 (629)
T ss_pred hhhHHHHHHHHHHHHh---cCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHhccccccch
Confidence 134566678887542 23777888889999885 222 23478899888899999999997766665433
No 250
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=94.49 E-value=1.2 Score=40.56 Aligned_cols=168 Identities=15% Similarity=0.089 Sum_probs=84.4
Q ss_pred HHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC------CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC---CC--HHHH
Q 019340 104 LLRWGKRFKHGRGVRKNLDKALDSFLKGAARG------STLAMVDAGLMYWEMDKKEAAISLYRQAAVL---GD--PAGQ 172 (342)
Q Consensus 104 ~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~------~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~--~~a~ 172 (342)
+..++.+... .|.++.|...+.++...+ .+...+.-+.+.+..|+..+|+..++..+.. .. +...
T Consensus 149 ~l~~a~~aRk----~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~ 224 (352)
T PF02259_consen 149 WLKFAKLARK----AGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISN 224 (352)
T ss_pred HHHHHHHHHH----CCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccH
Confidence 3344444444 356666666666666544 5566666666666667777777666665541 11 0011
Q ss_pred HHHHHHHHcCCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC--CCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHH
Q 019340 173 FNLGISYLQAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRG--RGVDFNLQEAARWYLRAAEGG--YVRAMYNTSLC 248 (342)
Q Consensus 173 ~~Lg~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g--~~~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~ 248 (342)
..+...............+..... ...+.++..+|.....- .-...+.+++...|++|+... ...+++.+|..
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 225 AELKSGLLESLEVISSTNLDKESK---ELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred HHHhhccccccccccccchhhhhH---HHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 111100000000000000000000 01235566666665542 011467888888888888763 45677777777
Q ss_pred HHcCCC-------------CcccHHHHHHHHHHHHHcCCHHHH
Q 019340 249 YSFGEG-------------LPLSHRQARKWMKRAADCGHGKAQ 278 (342)
Q Consensus 249 y~~g~g-------------~~~~~~~A~~~~~~a~~~~~~~a~ 278 (342)
+..-.. ...-...|+..|-+++..|+....
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~~~~ 344 (352)
T PF02259_consen 302 NDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSKYVR 344 (352)
T ss_pred HHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCCchH
Confidence 643210 111235688999999888765433
No 251
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.46 E-value=2.5 Score=37.20 Aligned_cols=112 Identities=16% Similarity=0.034 Sum_probs=70.6
Q ss_pred cCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHH-hCCCHHHHHHHH---HHHHcCCccCHHHHH
Q 019340 118 RKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAA-VLGDPAGQFNLG---ISYLQAQPANAEEAV 191 (342)
Q Consensus 118 ~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~-~~~~~~a~~~Lg---~~~~~g~~~~~~~A~ 191 (342)
.+++.+|...|..+... .+.++...++.+|...|+.+.|...+...- +..+..++-..+ .+-.-...++...
T Consensus 147 ~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~~-- 224 (304)
T COG3118 147 AEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQD-- 224 (304)
T ss_pred ccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHHH--
Confidence 46888888888888775 467788888888888888888888877643 223333332112 1111122333322
Q ss_pred HHHHH-HHHcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC
Q 019340 192 KLLYQ-ASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG 236 (342)
Q Consensus 192 ~~~~~-a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~ 236 (342)
.-++ +.++++.++-+.|+..|.. .++.+.|.+.+-..+..
T Consensus 225 -l~~~~aadPdd~~aa~~lA~~~~~----~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 225 -LQRRLAADPDDVEAALALADQLHL----VGRNEAALEHLLALLRR 265 (304)
T ss_pred -HHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHh
Confidence 2222 3446788888888888876 66788888777766654
No 252
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=94.46 E-value=0.054 Score=29.35 Aligned_cols=31 Identities=23% Similarity=0.251 Sum_probs=25.3
Q ss_pred HHHHHHHHHhhhcCCHHHHHHHHHHHHHcCc
Q 019340 276 KAQLEHGLGLFTEGEMMKAVVYLELATRAGE 306 (342)
Q Consensus 276 ~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~ 306 (342)
.+++.+|.++...+++++|..+|++++...+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 4567888889999999999999988887643
No 253
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=94.40 E-value=1 Score=34.78 Aligned_cols=93 Identities=12% Similarity=0.120 Sum_probs=69.2
Q ss_pred HHHHHHHHC-CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCC----HHHHHHHHHHhhhcCCHHHHHHHHHHHH
Q 019340 228 RWYLRAAEG-GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGH----GKAQLEHGLGLFTEGEMMKAVVYLELAT 302 (342)
Q Consensus 228 ~~~~~A~~~-~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~----~~a~~~Lg~~~~~~~~~~~A~~~~~~a~ 302 (342)
++..+.+.. -.....+++++++.... -..|..+.+.+++..+...+ -+..|.|+..++..++|++++.|....+
T Consensus 20 ~~~rq~a~~~~s~~s~f~lAwaLV~S~-~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll 98 (149)
T KOG3364|consen 20 EILRQAARSDVSKQSQFNLAWALVRSR-DTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALL 98 (149)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHccc-chHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHH
Confidence 334444332 34567889999985543 36789999999999987433 4567899999999999999999999998
Q ss_pred Hc--CcHHHHHHHHHHHhhcC
Q 019340 303 RA--GETAADHVKNVILQQLS 321 (342)
Q Consensus 303 ~~--~~~~a~~~~~~~~~~~~ 321 (342)
+. ++..+..+...+...++
T Consensus 99 ~~e~~n~Qa~~Lk~~ied~it 119 (149)
T KOG3364|consen 99 ETEPNNRQALELKETIEDKIT 119 (149)
T ss_pred hhCCCcHHHHHHHHHHHHHHh
Confidence 87 46777777776665553
No 254
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.28 E-value=3.6 Score=36.38 Aligned_cols=116 Identities=19% Similarity=0.169 Sum_probs=72.6
Q ss_pred cCCHHHHHHHHHHHHhC---CCH-------HHHHHHHHHHhcCC-CHHHHHHHHHHHHhC----C-----C-------HH
Q 019340 118 RKNLDKALDSFLKGAAR---GST-------LAMVDAGLMYWEMD-KKEAAISLYRQAAVL----G-----D-------PA 170 (342)
Q Consensus 118 ~~~~~~A~~~~~~A~~~---~~~-------~a~~~lg~~~~~~~-~~~~A~~~~~~a~~~----~-----~-------~~ 170 (342)
.+|++.|..+|.|+-.. .++ ..+++.|.-....+ +++.|+.|+++|.+. + . ..
T Consensus 6 ~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~ 85 (278)
T PF08631_consen 6 QGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLS 85 (278)
T ss_pred hCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHH
Confidence 36888888888887553 233 34577777777778 999999999998643 1 1 13
Q ss_pred HHHHHHHHHHc-CCccCHHHHHHHHHHHHHc-CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC
Q 019340 171 GQFNLGISYLQ-AQPANAEEAVKLLYQASIA-GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG 236 (342)
Q Consensus 171 a~~~Lg~~~~~-g~~~~~~~A~~~~~~a~~~-~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~ 236 (342)
.+..|+.+|.. +.....++|..+.+.+-.. ++....+.|..-...+ ..+.+.+.+.+.+.+..
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~---~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLK---SFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhc---cCChhHHHHHHHHHHHh
Confidence 56667788874 2334555666666555332 3433333333333332 45778888888887765
No 255
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=94.24 E-value=0.41 Score=42.85 Aligned_cols=55 Identities=18% Similarity=0.128 Sum_probs=27.4
Q ss_pred HHHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Q 019340 175 LGISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAE 235 (342)
Q Consensus 175 Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~ 235 (342)
-|.-|+ ..|.|++||.||.+++.. -++..+.|-+..|+. .+.+..|..-++.|+.
T Consensus 103 ~GN~yF--KQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk----~K~FA~AE~DC~~Aia 159 (536)
T KOG4648|consen 103 RGNTYF--KQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLK----QKSFAQAEEDCEAAIA 159 (536)
T ss_pred hhhhhh--hccchhHHHHHhhhhhccCCCCccchhhHHHHHHH----HHHHHHHHHhHHHHHH
Confidence 345555 555666666666665443 244445555555554 3344444444444433
No 256
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=94.17 E-value=1.5 Score=34.31 Aligned_cols=57 Identities=28% Similarity=0.173 Sum_probs=29.0
Q ss_pred HHHHHHHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Q 019340 171 GQFNLGISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRA 233 (342)
Q Consensus 171 a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A 233 (342)
+...++.++. ..+++++|+.++++++.. -+..++..+-.+|.. .++...|+..|++.
T Consensus 64 ~~~~l~~~~~--~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~----~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 64 ALERLAEALL--EAGDYEEALRLLQRALALDPYDEEAYRLLMRALAA----QGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHHH--HTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHH----TT-HHHHHHHHHHH
T ss_pred HHHHHHHHHH--hccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----CcCHHHHHHHHHHH
Confidence 3344444444 455666666666665543 244555555555554 44555666555554
No 257
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=94.02 E-value=0.21 Score=42.35 Aligned_cols=88 Identities=20% Similarity=0.119 Sum_probs=72.1
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCC
Q 019340 143 AGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLALCLHRGRG 218 (342)
Q Consensus 143 lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~ 218 (342)
-|..++....+..|+..|-+|+-. ..+.-+.|-+.+|+ ..++.+....-.+++++. +...+++.||.+...
T Consensus 16 ~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchl--k~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~--- 90 (284)
T KOG4642|consen 16 QGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHL--KLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQ--- 90 (284)
T ss_pred ccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHH--HhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHh---
Confidence 355666778899999999999866 44566778899999 688889999999999886 467889999999987
Q ss_pred CCCCHHHHHHHHHHHHHC
Q 019340 219 VDFNLQEAARWYLRAAEG 236 (342)
Q Consensus 219 ~~~~~~~A~~~~~~A~~~ 236 (342)
.+.+++|+..+.+|.+.
T Consensus 91 -s~~~~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 91 -SKGYDEAIKVLQRAYSL 107 (284)
T ss_pred -hccccHHHHHHHHHHHH
Confidence 66889999999999653
No 258
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=93.93 E-value=1.4 Score=40.11 Aligned_cols=168 Identities=13% Similarity=-0.063 Sum_probs=104.9
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCC------CHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHcC---C--HH
Q 019340 136 STLAMVDAGLMYWEMDKKEAAISLYRQAAVLG------DPAGQFNLGISYLQAQPANAEEAVKLLYQASIAG---H--VR 204 (342)
Q Consensus 136 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~------~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~~---~--~~ 204 (342)
....+..++.+....|.++.|...+.++...+ .+...+.-+.+.. ..|+..+|+..++..+... . +.
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw--~~g~~~~Ai~~L~~~~~~~~~~~~~~~ 222 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLW--AQGEQEEAIQKLRELLKCRLSKNIDSI 222 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHH--HcCCHHHHHHHHHHHHHHHhhhccccc
Confidence 45677889999999999999999999998765 7888888888888 7889999999998887621 1 11
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcC--CCCcccHHHHHHHHHHHHHcC--CHHHHHH
Q 019340 205 AQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFG--EGLPLSHRQARKWMKRAADCG--HGKAQLE 280 (342)
Q Consensus 205 a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~y~~g--~g~~~~~~~A~~~~~~a~~~~--~~~a~~~ 280 (342)
....+............ .......... ..+.++..+|.+.... .-...+.+++...|+.++... ...+++.
T Consensus 223 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~---~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~ 297 (352)
T PF02259_consen 223 SNAELKSGLLESLEVIS--STNLDKESKE---LKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHS 297 (352)
T ss_pred cHHHHhhcccccccccc--ccchhhhhHH---HHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHH
Confidence 11112111100000000 0000000000 0134555555555332 001348999999999999873 4667788
Q ss_pred HHHHhhhcC-----------------CHHHHHHHHHHHHHcCcHHHH
Q 019340 281 HGLGLFTEG-----------------EMMKAVVYLELATRAGETAAD 310 (342)
Q Consensus 281 Lg~~~~~~~-----------------~~~~A~~~~~~a~~~~~~~a~ 310 (342)
+|..+...= -...|+..|-+++..|+....
T Consensus 298 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~~~~ 344 (352)
T PF02259_consen 298 WALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSKYVR 344 (352)
T ss_pred HHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCCchH
Confidence 887665521 124599999999999887443
No 259
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=93.75 E-value=2.2 Score=35.48 Aligned_cols=68 Identities=24% Similarity=0.161 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHhC---CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC------CCHHHHHHHHHHHHcCCccCHHHHH
Q 019340 121 LDKALDSFLKGAAR---GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL------GDPAGQFNLGISYLQAQPANAEEAV 191 (342)
Q Consensus 121 ~~~A~~~~~~A~~~---~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~------~~~~a~~~Lg~~~~~g~~~~~~~A~ 191 (342)
.+.|..-|.++-.. .+++.++.||..|. ..|.++++.+|.++++. -|++.+..|+.+|. ..+++++|.
T Consensus 122 d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~--~~~~~e~AY 198 (203)
T PF11207_consen 122 DQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQ--KLKNYEQAY 198 (203)
T ss_pred cHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH--Hhcchhhhh
Confidence 34455555444332 35555555555553 45555555555555543 13455555555555 445555443
No 260
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=93.72 E-value=1.2 Score=36.93 Aligned_cols=84 Identities=13% Similarity=0.074 Sum_probs=68.6
Q ss_pred cCCHHHHHHHHHHHHhCCC-------HHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCccCHH
Q 019340 118 RKNLDKALDSFLKGAARGS-------TLAMVDAGLMYWEMDKKEAAISLYRQAAVLGD--PAGQFNLGISYLQAQPANAE 188 (342)
Q Consensus 118 ~~~~~~A~~~~~~A~~~~~-------~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~--~~a~~~Lg~~~~~g~~~~~~ 188 (342)
.+++.+|..-|..|++.-. .-.+.+-|-++...+..+.||.-+.+|++++. ..|+..-+.+|. ....++
T Consensus 108 ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeaye--k~ek~e 185 (271)
T KOG4234|consen 108 NGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYE--KMEKYE 185 (271)
T ss_pred cccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHH--hhhhHH
Confidence 5899999999999998631 12344777788888999999999999999854 678888888888 778999
Q ss_pred HHHHHHHHHHHcCCH
Q 019340 189 EAVKLLYQASIAGHV 203 (342)
Q Consensus 189 ~A~~~~~~a~~~~~~ 203 (342)
+|+.-|.+.++.+..
T Consensus 186 ealeDyKki~E~dPs 200 (271)
T KOG4234|consen 186 EALEDYKKILESDPS 200 (271)
T ss_pred HHHHHHHHHHHhCcc
Confidence 999999999887543
No 261
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=93.48 E-value=1.2 Score=36.86 Aligned_cols=92 Identities=12% Similarity=0.098 Sum_probs=73.6
Q ss_pred hCCChhHHhhHHHHHHHHHHhCcCCC---HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhc
Q 019340 75 SFTLPQLRAASLVCKSWNDALRPLRE---AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWE 149 (342)
Q Consensus 75 ~~~~~~~~~a~~~~~~~~~~~~~~~~---a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~ 149 (342)
+|..|++.+|...+...+...+.... +..+.+-|.+... .+..+.|+.-..+|++++ +..++...+.+|..
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iK----l~k~e~aI~dcsKaiel~pty~kAl~RRAeayek 180 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIK----LRKWESAIEDCSKAIELNPTYEKALERRAEAYEK 180 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHH----hhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHh
Confidence 78999999999888888887766432 3344455555555 468899999999999997 56788888999999
Q ss_pred CCCHHHHHHHHHHHHhCCCHH
Q 019340 150 MDKKEAAISLYRQAAVLGDPA 170 (342)
Q Consensus 150 ~~~~~~A~~~~~~a~~~~~~~ 170 (342)
...+++|++=|++..+.+...
T Consensus 181 ~ek~eealeDyKki~E~dPs~ 201 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILESDPSR 201 (271)
T ss_pred hhhHHHHHHHHHHHHHhCcch
Confidence 999999999999999875543
No 262
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=93.36 E-value=0.4 Score=30.61 Aligned_cols=45 Identities=20% Similarity=0.273 Sum_probs=33.8
Q ss_pred HHHHHHHHHhhhcCCHHHHHHHHHHHHHcC--cHHHHHHHHHHHhhc
Q 019340 276 KAQLEHGLGLFTEGEMMKAVVYLELATRAG--ETAADHVKNVILQQL 320 (342)
Q Consensus 276 ~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~~~~~~~~~ 320 (342)
+.+|.|+..++..|++++|..+.+.+++.. +..+..+...+...+
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~~i 48 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIEDKI 48 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHH
Confidence 457889999999999999999999999885 556666665555433
No 263
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=93.11 E-value=0.77 Score=38.11 Aligned_cols=63 Identities=11% Similarity=0.171 Sum_probs=54.3
Q ss_pred HHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC---C---CHHHHHHHHHHHhcCCCHHHHHHH
Q 019340 92 NDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR---G---STLAMVDAGLMYWEMDKKEAAISL 159 (342)
Q Consensus 92 ~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~---~---~~~a~~~lg~~~~~~~~~~~A~~~ 159 (342)
++..+...+++.++.||-.|.. .|.++++.++.+++++ + +++....|+.+|...+++++|--|
T Consensus 132 ~E~~~~l~t~elq~aLAtyY~k-----rD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AYiw 200 (203)
T PF11207_consen 132 LEGTPELETAELQYALATYYTK-----RDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAYIW 200 (203)
T ss_pred HcCCCCCCCHHHHHHHHHHHHc-----cCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhhhh
Confidence 4445667789999999999987 7999999999999986 2 788999999999999999998644
No 264
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.08 E-value=8.5 Score=36.79 Aligned_cols=202 Identities=15% Similarity=0.052 Sum_probs=123.1
Q ss_pred CCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC----CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCC-CHHHH
Q 019340 98 LREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG----STLAMVDAGLMYWEMDKKEAAISLYRQAAVLG-DPAGQ 172 (342)
Q Consensus 98 ~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~----~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~-~~~a~ 172 (342)
++.+.+.+.-+.++.. .++.+.|+..+..+++.. +.--.+.+|.++....++..|...+....+.. ...|.
T Consensus 264 p~ga~wll~~ar~l~~----~g~~eaa~~~~~~~v~~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~desdWS~a~ 339 (546)
T KOG3783|consen 264 PKGALWLLMEARILSI----KGNSEAAIDMESLSIPIRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLLRDESDWSHAF 339 (546)
T ss_pred CCCccHHHHHHHHHHH----cccHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhhHHH
Confidence 4466666666766665 456889999999988821 23345678888888889999999988888763 33333
Q ss_pred --HHHHHHHHc------CCccCHHHHHHHHHHHHH------------------------cC-----CHH--HHHHHHHHH
Q 019340 173 --FNLGISYLQ------AQPANAEEAVKLLYQASI------------------------AG-----HVR--AQYQLALCL 213 (342)
Q Consensus 173 --~~Lg~~~~~------g~~~~~~~A~~~~~~a~~------------------------~~-----~~~--a~~~lg~~~ 213 (342)
|..|.|++. +..++-++|-.+++...+ .+ .+. -++.+..++
T Consensus 340 Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f~~RKverf~~~~~~~~~~~la~P~~El~Y~W 419 (546)
T KOG3783|consen 340 YTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKFIVRKVERFVKRGPLNASILLASPYYELAYFW 419 (546)
T ss_pred HHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHhccccccccccccchHHHHHHHH
Confidence 344566653 223455555555444311 01 111 134444444
Q ss_pred hcCCCC-CCCHHHHHHHHH-HHHHCCCHH--HHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc---------CCHHHHHH
Q 019340 214 HRGRGV-DFNLQEAARWYL-RAAEGGYVR--AMYNTSLCYSFGEGLPLSHRQARKWMKRAADC---------GHGKAQLE 280 (342)
Q Consensus 214 ~~g~~~-~~~~~~A~~~~~-~A~~~~~~~--a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~---------~~~~a~~~ 280 (342)
-.=... .++..+...-+. ..++.-|.. -+..+|.+. +-.| +...|..+|..+++. -.|.|+|.
T Consensus 420 ngf~~~s~~~l~k~~~~~~~~~~~d~Dd~~lk~lL~g~~l-R~Lg---~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YE 495 (546)
T KOG3783|consen 420 NGFSRMSKNELEKMRAELENPKIDDSDDEGLKYLLKGVIL-RNLG---DSEVAPKCFKIQVEKESKRTEDLWAVPFALYE 495 (546)
T ss_pred hhcccCChhhHHHHHHHHhccCCCCchHHHHHHHHHHHHH-HHcC---CHHHHHHHHHHHHHHHHhhccccccccHHHHH
Confidence 211111 222222222221 112111222 244567777 4455 999999999999853 23789999
Q ss_pred HHHHhhhcCC-HHHHHHHHHHHHHcCcH
Q 019340 281 HGLGLFTEGE-MMKAVVYLELATRAGET 307 (342)
Q Consensus 281 Lg~~~~~~~~-~~~A~~~~~~a~~~~~~ 307 (342)
||.+|.+++. ..++..|+.+|-+...+
T Consensus 496 lA~l~~~~~g~~~e~~~~L~kAr~~~~d 523 (546)
T KOG3783|consen 496 LALLYWDLGGGLKEARALLLKAREYASD 523 (546)
T ss_pred HHHHHHhcccChHHHHHHHHHHHhhccc
Confidence 9999999998 99999999999987633
No 265
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.07 E-value=2 Score=36.75 Aligned_cols=66 Identities=12% Similarity=0.000 Sum_probs=37.5
Q ss_pred HHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCcHHHH
Q 019340 241 AMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAAD 310 (342)
Q Consensus 241 a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~ 310 (342)
-+.|+..|+.. ..++-++++.-...+.. ++..|++.-|.+....=|..+|..-|.+++++++.-+-
T Consensus 232 LllNy~QC~L~----~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslas 299 (329)
T KOG0545|consen 232 LLLNYCQCLLK----KEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLAS 299 (329)
T ss_pred HHHhHHHHHhh----HHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHH
Confidence 34455555543 22555555555555544 45666666666666666666666666666666654443
No 266
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.79 E-value=4.7 Score=38.02 Aligned_cols=130 Identities=13% Similarity=0.162 Sum_probs=70.0
Q ss_pred CChhHHhhHHHH---HHHHHHhCc-----CCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC-----CHHHHHHH
Q 019340 77 TLPQLRAASLVC---KSWNDALRP-----LREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG-----STLAMVDA 143 (342)
Q Consensus 77 ~~~~~~~a~~~~---~~~~~~~~~-----~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~-----~~~a~~~l 143 (342)
-.|+..+|.... .+|+...+. .-.+..++.+|..... .+-++.|...|..|...- .+....++
T Consensus 335 v~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~s----v~~~enAe~hf~~a~k~t~~~dl~a~~nlnl 410 (629)
T KOG2300|consen 335 VRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHS----VNCYENAEFHFIEATKLTESIDLQAFCNLNL 410 (629)
T ss_pred HhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhh----cchHHHHHHHHHHHHHhhhHHHHHHHHHHhH
Confidence 345555554433 345544443 1134566777765555 467778888888777753 22344677
Q ss_pred HHHHhcCCCHHHHHHHHHHHHhC--CCH-------HHHHHHHHHHHcCCccCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 019340 144 GLMYWEMDKKEAAISLYRQAAVL--GDP-------AGQFNLGISYLQAQPANAEEAVKLLYQASIAGHVRAQYQLALC 212 (342)
Q Consensus 144 g~~~~~~~~~~~A~~~~~~a~~~--~~~-------~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~ 212 (342)
+..|.+.++-+.--+.++..-.. ... ..+|--|...+ ..+++.+|...+++.++..+++-.+.|-.|
T Consensus 411 Ai~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf--~qn~lnEaK~~l~e~Lkmanaed~~rL~a~ 486 (629)
T KOG2300|consen 411 AISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAF--KQNDLNEAKRFLRETLKMANAEDLNRLTAC 486 (629)
T ss_pred HHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHH--HhccHHHHHHHHHHHHhhcchhhHHHHHHH
Confidence 77887766655544443332211 111 12222333333 466777777777777776555555444333
No 267
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=92.74 E-value=2 Score=36.81 Aligned_cols=117 Identities=15% Similarity=0.159 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC
Q 019340 137 TLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQFNLGISYLQAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRG 216 (342)
Q Consensus 137 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g 216 (342)
..++..-|+-++..|++++|...|+.|+- .|-.+...-.+++++ |.+ . +.-....+.|..+|+..
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~--------~l~~L~lkEkP~e~e----W~e-L-dk~~tpLllNy~QC~L~- 242 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAII--------CLRNLQLKEKPGEPE----WLE-L-DKMITPLLLNYCQCLLK- 242 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHH--------HHHHHHhccCCCChH----HHH-H-HHhhhHHHHhHHHHHhh-
Confidence 34666778888888999999998887752 222222211223321 111 1 11123456677777765
Q ss_pred CCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCCH
Q 019340 217 RGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHG 275 (342)
Q Consensus 217 ~~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~ 275 (342)
.+++-++++.....+.. ++..|++..|.....-. +..+|..-|.++++.++.
T Consensus 243 ---~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~W----n~~eA~~D~~~vL~ldps 296 (329)
T KOG0545|consen 243 ---KEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVW----NEAEAKADLQKVLELDPS 296 (329)
T ss_pred ---HHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhc----CHHHHHHHHHHHHhcChh
Confidence 56777777777777765 57778888777775433 788888888888877654
No 268
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=92.65 E-value=0.16 Score=27.25 Aligned_cols=27 Identities=22% Similarity=0.429 Sum_probs=15.4
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 019340 139 AMVDAGLMYWEMDKKEAAISLYRQAAV 165 (342)
Q Consensus 139 a~~~lg~~~~~~~~~~~A~~~~~~a~~ 165 (342)
+++.+|.++...+++++|+.+|+++++
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 345555556555666666666555553
No 269
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=92.64 E-value=6.8 Score=34.59 Aligned_cols=218 Identities=15% Similarity=0.098 Sum_probs=116.0
Q ss_pred CChhHHhhHHHHHHHHHHhCcCCCH-------HHHHHHHHHHHcCCCCcC-CHHHHHHHHHHHHhC----C-----C---
Q 019340 77 TLPQLRAASLVCKSWNDALRPLREA-------MVLLRWGKRFKHGRGVRK-NLDKALDSFLKGAAR----G-----S--- 136 (342)
Q Consensus 77 ~~~~~~~a~~~~~~~~~~~~~~~~a-------~a~~~lg~~y~~g~g~~~-~~~~A~~~~~~A~~~----~-----~--- 136 (342)
.+|++..|...+.+...... ..++ ..+|+.|.-... ++ +++.|+.|+++|.+. + .
T Consensus 5 ~~~~~~~A~~~~~K~~~~~~-~~~~~~~~~La~~~yn~G~~l~~----~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~ 79 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAKDLLN-SLDPDMAEELARVCYNIGKSLLS----KKDKYEEAVKWLQRAYDILEKPGKMDKLSPDG 79 (278)
T ss_pred hhCCHHHHHHHHHHhhhHHh-cCCcHHHHHHHHHHHHHHHHHHH----cCCChHHHHHHHHHHHHHHHhhhhccccCCcH
Confidence 34566666554444433331 1122 456666666555 57 999999999999775 2 1
Q ss_pred ----HHHHHHHHHHHhcCCCHH---HHHHHHHHHHhC-CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHcCC-HHHHH
Q 019340 137 ----TLAMVDAGLMYWEMDKKE---AAISLYRQAAVL-GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIAGH-VRAQY 207 (342)
Q Consensus 137 ----~~a~~~lg~~~~~~~~~~---~A~~~~~~a~~~-~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~~~-~~a~~ 207 (342)
...+..|+.+|...+..+ +|..+.+.+-.. ++....+.|..-...+ .++.+.+.+.+.+.+..-+ ++.-+
T Consensus 80 ~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~-~~~~~~~~~~L~~mi~~~~~~e~~~ 158 (278)
T PF08631_consen 80 SELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLK-SFDEEEYEEILMRMIRSVDHSESNF 158 (278)
T ss_pred HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhc-cCChhHHHHHHHHHHHhcccccchH
Confidence 134567888888877654 444444444322 5555555555444433 6778888888888776532 43333
Q ss_pred HHHH-HHhcCCCCCCCHHHHHHHHHHHHHC--C-CHHHHHH---HHHHHHcCC-C-Ccc--cHHHHHHHHHHHHHc----
Q 019340 208 QLAL-CLHRGRGVDFNLQEAARWYLRAAEG--G-YVRAMYN---TSLCYSFGE-G-LPL--SHRQARKWMKRAADC---- 272 (342)
Q Consensus 208 ~lg~-~~~~g~~~~~~~~~A~~~~~~A~~~--~-~~~a~~~---lg~~y~~g~-g-~~~--~~~~A~~~~~~a~~~---- 272 (342)
.... ++..-. ..+...+...+.+.+.. . ..+.+.. +-.++..+. + ... ..+....++......
T Consensus 159 ~~~l~~i~~l~--~~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ 236 (278)
T PF08631_consen 159 DSILHHIKQLA--EKSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQ 236 (278)
T ss_pred HHHHHHHHHHH--hhCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCC
Confidence 2211 111100 23445566666555432 1 1110111 222222221 1 011 133333444433221
Q ss_pred CCHH-------HHHHHHHHhhhcCCHHHHHHHHHHHH
Q 019340 273 GHGK-------AQLEHGLGLFTEGEMMKAVVYLELAT 302 (342)
Q Consensus 273 ~~~~-------a~~~Lg~~~~~~~~~~~A~~~~~~a~ 302 (342)
-..+ -..+-|.-.+..++|.+|..||+.++
T Consensus 237 ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 237 LSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 1122 23677888889999999999999886
No 270
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=92.30 E-value=0.17 Score=26.94 Aligned_cols=23 Identities=17% Similarity=0.115 Sum_probs=14.4
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHH
Q 019340 139 AMVDAGLMYWEMDKKEAAISLYR 161 (342)
Q Consensus 139 a~~~lg~~~~~~~~~~~A~~~~~ 161 (342)
+.+.+|.++...||+++|...++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45566666666666666666554
No 271
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=92.26 E-value=1.8 Score=35.43 Aligned_cols=58 Identities=17% Similarity=0.107 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHhCC-C----HHHHHHHHHHHHcCCccCHHHHHHHHHHH
Q 019340 138 LAMVDAGLMYWEMDKKEAAISLYRQAAVLG-D----PAGQFNLGISYLQAQPANAEEAVKLLYQA 197 (342)
Q Consensus 138 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~-~----~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a 197 (342)
.++..+|..|...||.++|++.|.++.+.. . .+.++++-.+.. ..+|......+..++
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i--~~~d~~~v~~~i~ka 99 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAI--FFGDWSHVEKYIEKA 99 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHH--HhCCHHHHHHHHHHH
Confidence 445566666666666666666666655441 1 233333333333 345555555555554
No 272
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=91.91 E-value=0.94 Score=27.62 Aligned_cols=31 Identities=23% Similarity=0.301 Sum_probs=25.4
Q ss_pred HHHHHHHhhhcCCHHHHHHHHHHHHHcCcHH
Q 019340 278 QLEHGLGLFTEGEMMKAVVYLELATRAGETA 308 (342)
Q Consensus 278 ~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~~ 308 (342)
.++|+.+|...|+.+.|...++..+..++..
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl~~~~~~ 32 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVIEEGDEA 32 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHHHcCCHH
Confidence 3678999999999999999999888766543
No 273
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=91.58 E-value=0.24 Score=26.32 Aligned_cols=24 Identities=25% Similarity=0.332 Sum_probs=19.9
Q ss_pred HHHHHHHHHhhhcCCHHHHHHHHH
Q 019340 276 KAQLEHGLGLFTEGEMMKAVVYLE 299 (342)
Q Consensus 276 ~a~~~Lg~~~~~~~~~~~A~~~~~ 299 (342)
.+.+.||.++...|++++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 456788899999999999988875
No 274
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=91.50 E-value=2.6 Score=31.85 Aligned_cols=79 Identities=15% Similarity=0.111 Sum_probs=47.9
Q ss_pred CCHHHHHHHHHHHHhC-------------C-CHHHHHHHHHHHhcCCCHHHHHHHHHHHH-------hCCCHH------H
Q 019340 119 KNLDKALDSFLKGAAR-------------G-STLAMVDAGLMYWEMDKKEAAISLYRQAA-------VLGDPA------G 171 (342)
Q Consensus 119 ~~~~~A~~~~~~A~~~-------------~-~~~a~~~lg~~~~~~~~~~~A~~~~~~a~-------~~~~~~------a 171 (342)
+-+++|..-+++|.+. | ++-.+..|+..+...|++++++..-.+++ ++...+ +
T Consensus 23 g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaa 102 (144)
T PF12968_consen 23 GAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAA 102 (144)
T ss_dssp T-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHH
Confidence 5778888888888763 1 23345567777778888887776666655 333333 3
Q ss_pred HHHHHHHHHcCCccCHHHHHHHHHHHHH
Q 019340 172 QFNLGISYLQAQPANAEEAVKLLYQASI 199 (342)
Q Consensus 172 ~~~Lg~~~~~g~~~~~~~A~~~~~~a~~ 199 (342)
.++-+.++. ..|..++|+..|+++.+
T Consensus 103 Vfsra~Al~--~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 103 VFSRAVALE--GLGRKEEALKEFRMAGE 128 (144)
T ss_dssp HHHHHHHHH--HTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHH--hcCChHHHHHHHHHHHH
Confidence 344444444 56777888888877754
No 275
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=91.32 E-value=0.5 Score=28.83 Aligned_cols=31 Identities=32% Similarity=0.347 Sum_probs=25.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhCCCHH
Q 019340 140 MVDAGLMYWEMDKKEAAISLYRQAAVLGDPA 170 (342)
Q Consensus 140 ~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~ 170 (342)
.++|+..|...||.+.|.+.++..+..++..
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl~~~~~~ 32 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVIEEGDEA 32 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHHHcCCHH
Confidence 4678889999999999999999888776654
No 276
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=91.25 E-value=0.96 Score=33.65 Aligned_cols=94 Identities=10% Similarity=0.024 Sum_probs=55.1
Q ss_pred HHhhCCChhHHhhHHHHHHHHHHhCcCCCH-HHHHHHHHHHHcCCCCcCCHHH-------HHHHHHHHHhCC--CHHHHH
Q 019340 72 IAASFTLPQLRAASLVCKSWNDALRPLREA-MVLLRWGKRFKHGRGVRKNLDK-------ALDSFLKGAARG--STLAMV 141 (342)
Q Consensus 72 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~a-~a~~~lg~~y~~g~g~~~~~~~-------A~~~~~~A~~~~--~~~a~~ 141 (342)
+...+..||+.+|..+....+.......++ ..+..-|.++..--.+..|.+- +++.|.++..+. .+..++
T Consensus 3 A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L~ 82 (111)
T PF04781_consen 3 AKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSLF 82 (111)
T ss_pred HHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHHH
Confidence 455678889999988888887776655443 4555556666442222223322 555555555542 445556
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHh
Q 019340 142 DAGLMYWEMDKKEAAISLYRQAAV 165 (342)
Q Consensus 142 ~lg~~~~~~~~~~~A~~~~~~a~~ 165 (342)
.||.-+.....|++++.-.++++.
T Consensus 83 ~la~~l~s~~~Ykk~v~kak~~Ls 106 (111)
T PF04781_consen 83 ELASQLGSVKYYKKAVKKAKRGLS 106 (111)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHhc
Confidence 666665555556666666555553
No 277
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=91.08 E-value=2.7 Score=34.41 Aligned_cols=91 Identities=15% Similarity=0.154 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC-----CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC----CCHHHH
Q 019340 102 MVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG-----STLAMVDAGLMYWEMDKKEAAISLYRQAAVL----GDPAGQ 172 (342)
Q Consensus 102 ~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~-----~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----~~~~a~ 172 (342)
.++..+|..|.. .||.+.|++.|.++-+.. -.+.++++-++....+|+.....++.++-.. ++.+..
T Consensus 37 ~~~~~l~~~~~~----~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~ 112 (177)
T PF10602_consen 37 MALEDLADHYCK----IGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERR 112 (177)
T ss_pred HHHHHHHHHHHH----hhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHH
Confidence 688899999999 589999999999987742 3466778888888889999999999987533 333322
Q ss_pred ----HHHHHHHHcCCccCHHHHHHHHHHHH
Q 019340 173 ----FNLGISYLQAQPANAEEAVKLLYQAS 198 (342)
Q Consensus 173 ----~~Lg~~~~~g~~~~~~~A~~~~~~a~ 198 (342)
..-|..++ ..+++.+|...|..+.
T Consensus 113 nrlk~~~gL~~l--~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 113 NRLKVYEGLANL--AQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHHHH--HhchHHHHHHHHHccC
Confidence 22344444 4667777777776653
No 278
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=90.94 E-value=11 Score=33.37 Aligned_cols=57 Identities=18% Similarity=0.146 Sum_probs=43.6
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHH
Q 019340 138 LAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQ 196 (342)
Q Consensus 138 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~ 196 (342)
+.-+.-+.-....+++.+|...|..+... .+.++...|+.+|. ..|+.+.|...+..
T Consensus 135 e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l--~~g~~e~A~~iL~~ 193 (304)
T COG3118 135 EEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLL--AAGDVEAAQAILAA 193 (304)
T ss_pred HHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHH--HcCChHHHHHHHHh
Confidence 33444555666778999999999998765 66788888999998 88888888777765
No 279
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=90.81 E-value=0.89 Score=40.15 Aligned_cols=69 Identities=20% Similarity=0.191 Sum_probs=58.3
Q ss_pred HHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHH--hCCCHHHHHHHH
Q 019340 103 VLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAA--VLGDPAGQFNLG 176 (342)
Q Consensus 103 a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~--~~~~~~a~~~Lg 176 (342)
++..-|.++.. |+.++|..+|+-|+.+ .+++++...|.+....+++-+|-.+|-+|+ ..++.+|+.+-.
T Consensus 119 Al~~A~~~~~~-----Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~ 191 (472)
T KOG3824|consen 119 ALKAAGRSRKD-----GKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRA 191 (472)
T ss_pred HHHHHHHHHhc-----cchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhh
Confidence 44455677776 5899999999999887 599999999999999999999999999987 558888887755
No 280
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=90.55 E-value=5.5 Score=30.15 Aligned_cols=93 Identities=15% Similarity=0.151 Sum_probs=60.4
Q ss_pred HHHHHhhCCChhHHhhHHHHHHHHHHhCcCC----------CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHH------
Q 019340 69 LNKIAASFTLPQLRAASLVCKSWNDALRPLR----------EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGA------ 132 (342)
Q Consensus 69 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~----------~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~------ 132 (342)
+..+...+..+-+.+|...|+.....+...+ ++..+-.|.-.+.. .+++++++..-.+|+
T Consensus 13 Ls~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~----Lgry~e~L~sA~~aL~YFNRR 88 (144)
T PF12968_consen 13 LSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAG----LGRYDECLQSADRALRYFNRR 88 (144)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHH----TT-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHh----hccHHHHHHHHHHHHHHHhhc
Confidence 4445556777888999999998888876654 22344445555544 467777555444444
Q ss_pred -hCC------CHHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 019340 133 -ARG------STLAMVDAGLMYWEMDKKEAAISLYRQAAV 165 (342)
Q Consensus 133 -~~~------~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~ 165 (342)
+++ ++.+.++-+..+...|+.++|++.|+.+.+
T Consensus 89 GEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 89 GELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp --TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred cccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 443 345667778888888999999999999875
No 281
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=90.53 E-value=13 Score=35.70 Aligned_cols=112 Identities=15% Similarity=0.034 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHcC---CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCCcccHH
Q 019340 187 AEEAVKLLYQASIAG---HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG---GYVRAMYNTSLCYSFGEGLPLSHR 260 (342)
Q Consensus 187 ~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~---~~~~a~~~lg~~y~~g~g~~~~~~ 260 (342)
..++..+|+++++.- +...++.++..-. +.-.....++--..+.++... +...++..+-..-.+.. -.+
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE-~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~e----Glk 383 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEE-SRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAE----GLK 383 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH-HhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhh----hHH
Confidence 456667777766542 2222223322221 110011344445555555443 22223333333322322 345
Q ss_pred HHHHHHHHHHHcCC----HHHHHHHHHHhhhcCCHHHHHHHHHHHHHc
Q 019340 261 QARKWMKRAADCGH----GKAQLEHGLGLFTEGEMMKAVVYLELATRA 304 (342)
Q Consensus 261 ~A~~~~~~a~~~~~----~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~ 304 (342)
.|...|.+|-+... .-....+-. |...++.+-|.+.|+.++..
T Consensus 384 aaR~iF~kaR~~~r~~hhVfVa~A~mE-y~cskD~~~AfrIFeLGLkk 430 (656)
T KOG1914|consen 384 AARKIFKKAREDKRTRHHVFVAAALME-YYCSKDKETAFRIFELGLKK 430 (656)
T ss_pred HHHHHHHHHhhccCCcchhhHHHHHHH-HHhcCChhHHHHHHHHHHHh
Confidence 56666666655321 111111111 34456666666666666654
No 282
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.09 E-value=14 Score=33.36 Aligned_cols=156 Identities=13% Similarity=-0.016 Sum_probs=105.9
Q ss_pred HHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHcC---CH---HHHHHHHHHHhc
Q 019340 144 GLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIAG---HV---RAQYQLALCLHR 215 (342)
Q Consensus 144 g~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~~---~~---~a~~~lg~~~~~ 215 (342)
+-+.+..|+..+|...+.+.++. .+--++-.--.+++ -.|+...-...++|.+..- .| -..-.++.++.+
T Consensus 110 aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~f--y~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E 187 (491)
T KOG2610|consen 110 AAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHF--YNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEE 187 (491)
T ss_pred HHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHH--hccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHH
Confidence 34555678888888888888876 44445555556666 4667777788888888762 22 122233444444
Q ss_pred CCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc---CCHH---HHHHHHHHhhh
Q 019340 216 GRGVDFNLQEAARWYLRAAEGG--YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC---GHGK---AQLEHGLGLFT 287 (342)
Q Consensus 216 g~~~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~---~~~~---a~~~Lg~~~~~ 287 (342)
.+-+.+|.+.-++|++.+ +..+...++.++.. ....+++.+++.+.-+. +.-. -+...+..+..
T Consensus 188 ----~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem----~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE 259 (491)
T KOG2610|consen 188 ----CGIYDDAEKQADRALQINRFDCWASHAKAHVLEM----NGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIE 259 (491)
T ss_pred ----hccchhHHHHHHhhccCCCcchHHHHHHHHHHHh----cchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhc
Confidence 567999999999999886 55566667777743 33899999999887553 2221 23456677777
Q ss_pred cCCHHHHHHHHHHHH--HcCcHHH
Q 019340 288 EGEMMKAVVYLELAT--RAGETAA 309 (342)
Q Consensus 288 ~~~~~~A~~~~~~a~--~~~~~~a 309 (342)
.+++++|...|.+-+ ++.-.++
T Consensus 260 ~aeye~aleIyD~ei~k~l~k~Da 283 (491)
T KOG2610|consen 260 GAEYEKALEIYDREIWKRLEKDDA 283 (491)
T ss_pred ccchhHHHHHHHHHHHHHhhccch
Confidence 899999999998765 4555555
No 283
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=89.91 E-value=16 Score=33.72 Aligned_cols=208 Identities=15% Similarity=0.042 Sum_probs=120.2
Q ss_pred cCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC---CCH-----HHHHHHHHHHHcCCccCH
Q 019340 118 RKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVL---GDP-----AGQFNLGISYLQAQPANA 187 (342)
Q Consensus 118 ~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~-----~a~~~Lg~~~~~g~~~~~ 187 (342)
.|+.+.|..|-+.|...- -+-+...+=......||++.|+++....... +.. .+...-+.... -...|+
T Consensus 167 ~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s-~ldadp 245 (531)
T COG3898 167 LGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMS-LLDADP 245 (531)
T ss_pred cccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHH-HhcCCh
Confidence 467777888888877753 2222222222334568888888887664322 111 11111111111 124467
Q ss_pred HHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHcCCCCcccHHHHHH
Q 019340 188 EEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG-YVRAMYNTSLCYSFGEGLPLSHRQARK 264 (342)
Q Consensus 188 ~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~~-~~~a~~~lg~~y~~g~g~~~~~~~A~~ 264 (342)
..|...-..+.+. +...+-..-+..++. .+|..|+-..++.+-+.. +++ ++.+|.+-. .-+-++.
T Consensus 246 ~~Ar~~A~~a~KL~pdlvPaav~AAralf~----d~~~rKg~~ilE~aWK~ePHP~----ia~lY~~ar----~gdta~d 313 (531)
T COG3898 246 ASARDDALEANKLAPDLVPAAVVAARALFR----DGNLRKGSKILETAWKAEPHPD----IALLYVRAR----SGDTALD 313 (531)
T ss_pred HHHHHHHHHHhhcCCccchHHHHHHHHHHh----ccchhhhhhHHHHHHhcCCChH----HHHHHHHhc----CCCcHHH
Confidence 7777777766654 455566666666666 667888888888877653 332 334443321 1122333
Q ss_pred HHHHH-----HHcCCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCcHHHHHHHHHHHhhcChhcHHHHHHHHHhhhcC
Q 019340 265 WMKRA-----ADCGHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRAM 338 (342)
Q Consensus 265 ~~~~a-----~~~~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 338 (342)
-++++ ++.++.++.+.++..-+..|++..|..--+.+.+..+.+..+.+-.=...-.-++-.+++....+-.+-
T Consensus 314 RlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 314 RLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 33333 234778888888888888999999999999999888877766543333334445555555544443333
No 284
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=89.82 E-value=0.97 Score=43.35 Aligned_cols=81 Identities=20% Similarity=0.199 Sum_probs=46.9
Q ss_pred cCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHH
Q 019340 118 RKNLDKALDSFLKGAARG---STLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVK 192 (342)
Q Consensus 118 ~~~~~~A~~~~~~A~~~~---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~ 192 (342)
.|+...|+..+..|.... ......+|+.+...-+-.-.|-.++.+++.. ..|-.++-+|.+|. ...|..+|++
T Consensus 620 ~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l--~l~~i~~a~~ 697 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYL--ALKNISGALE 697 (886)
T ss_pred cCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHH--HHhhhHHHHH
Confidence 456666666666665542 2223455666655555566666666665554 33445555666666 5666666666
Q ss_pred HHHHHHHc
Q 019340 193 LLYQASIA 200 (342)
Q Consensus 193 ~~~~a~~~ 200 (342)
.|+.|++.
T Consensus 698 ~~~~a~~~ 705 (886)
T KOG4507|consen 698 AFRQALKL 705 (886)
T ss_pred HHHHHHhc
Confidence 66666654
No 285
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=89.66 E-value=0.96 Score=26.23 Aligned_cols=31 Identities=6% Similarity=0.196 Sum_probs=23.8
Q ss_pred HHHHHHHHHhhhcCCHHHHHHH--HHHHHHcCc
Q 019340 276 KAQLEHGLGLFTEGEMMKAVVY--LELATRAGE 306 (342)
Q Consensus 276 ~a~~~Lg~~~~~~~~~~~A~~~--~~~a~~~~~ 306 (342)
+.++.+|..+..+|++++|+++ |+-++.+++
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~ 34 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDK 34 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence 4577889999999999999999 557766543
No 286
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=89.52 E-value=4.9 Score=28.91 Aligned_cols=47 Identities=23% Similarity=0.046 Sum_probs=35.3
Q ss_pred cHHHHHHHHHHHHHc----C-------CHHHHHHHHHHhhhcCCHHHHHHHHHHHHHc
Q 019340 258 SHRQARKWMKRAADC----G-------HGKAQLEHGLGLFTEGEMMKAVVYLELATRA 304 (342)
Q Consensus 258 ~~~~A~~~~~~a~~~----~-------~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~ 304 (342)
|+..|++.+.+..+. + ...+..+++.++...|++++|+..++.|+++
T Consensus 13 dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 13 DYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred CHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 777776666665442 1 1356688999999999999999999999865
No 287
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.35 E-value=12 Score=33.79 Aligned_cols=151 Identities=12% Similarity=0.015 Sum_probs=89.2
Q ss_pred HHHhhCCChhHHhhHHHHHHHHHHhCcCCC-HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC---CC---HHHHHHH
Q 019340 71 KIAASFTLPQLRAASLVCKSWNDALRPLRE-AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR---GS---TLAMVDA 143 (342)
Q Consensus 71 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~---~~---~~a~~~l 143 (342)
+++.++..|++.+|. ..|-+...+++. -.+.-.--..+.. .|+.......+++.+.. +- ....-.+
T Consensus 109 ~aai~~~~g~~h~a~---~~wdklL~d~PtDlla~kfsh~a~fy----~G~~~~~k~ai~kIip~wn~dlp~~sYv~Gmy 181 (491)
T KOG2610|consen 109 KAAILWGRGKHHEAA---IEWDKLLDDYPTDLLAVKFSHDAHFY----NGNQIGKKNAIEKIIPKWNADLPCYSYVHGMY 181 (491)
T ss_pred hHHHhhccccccHHH---HHHHHHHHhCchhhhhhhhhhhHHHh----ccchhhhhhHHHHhccccCCCCcHHHHHHHHH
Confidence 344456777777776 345454444432 2222222222222 24555666677777665 22 1222356
Q ss_pred HHHHhcCCCHHHHHHHHHHHHhCCCHHHHH--HHHHHHHcCCccCHHHHHHHHHHHHHc---CCH---HHHHHHHHHHhc
Q 019340 144 GLMYWEMDKKEAAISLYRQAAVLGDPAGQF--NLGISYLQAQPANAEEAVKLLYQASIA---GHV---RAQYQLALCLHR 215 (342)
Q Consensus 144 g~~~~~~~~~~~A~~~~~~a~~~~~~~a~~--~Lg~~~~~g~~~~~~~A~~~~~~a~~~---~~~---~a~~~lg~~~~~ 215 (342)
+..+.+.|=+++|.+.-+++++.+..+++. .++.++. ..+++.++.++..+.-+. +.. .-+...+.++.+
T Consensus 182 aFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVle--m~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE 259 (491)
T KOG2610|consen 182 AFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLE--MNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIE 259 (491)
T ss_pred HhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHH--hcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhc
Confidence 667777888999999989988775544444 4444444 677888888888775442 222 234456777776
Q ss_pred CCCCCCCHHHHHHHHHHHH
Q 019340 216 GRGVDFNLQEAARWYLRAA 234 (342)
Q Consensus 216 g~~~~~~~~~A~~~~~~A~ 234 (342)
| ..+++|++.|.+-+
T Consensus 260 ~----aeye~aleIyD~ei 274 (491)
T KOG2610|consen 260 G----AEYEKALEIYDREI 274 (491)
T ss_pred c----cchhHHHHHHHHHH
Confidence 3 46788888887643
No 288
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=88.74 E-value=23 Score=35.52 Aligned_cols=151 Identities=14% Similarity=0.128 Sum_probs=82.5
Q ss_pred HHhcCCCHHHHHHHHHHHH---------hCCC----HHHHHHHHHHHHcCCccCHHHHHHHHHHHHHcCCHHHHHH----
Q 019340 146 MYWEMDKKEAAISLYRQAA---------VLGD----PAGQFNLGISYLQAQPANAEEAVKLLYQASIAGHVRAQYQ---- 208 (342)
Q Consensus 146 ~~~~~~~~~~A~~~~~~a~---------~~~~----~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~---- 208 (342)
+|...|.+++|+..|.+.- +.-+ .+....+|.-|. ..|+.+.|...|.++-+-....-+|.
T Consensus 846 lyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e--~~g~lkaae~~flea~d~kaavnmyk~s~l 923 (1636)
T KOG3616|consen 846 LYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELE--AEGDLKAAEEHFLEAGDFKAAVNMYKASEL 923 (1636)
T ss_pred eeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHH--hccChhHHHHHHHhhhhHHHHHHHhhhhhh
Confidence 4444567777777777642 2222 234555666666 77888888888877643211111111
Q ss_pred HHHHHh----cCCCCCCCHHHHHH-HHHHHHHCCCH--HHHHHHHHHH-----HcCCCCcccHHHHHHHHHHHHHcCCHH
Q 019340 209 LALCLH----RGRGVDFNLQEAAR-WYLRAAEGGYV--RAMYNTSLCY-----SFGEGLPLSHRQARKWMKRAADCGHGK 276 (342)
Q Consensus 209 lg~~~~----~g~~~~~~~~~A~~-~~~~A~~~~~~--~a~~~lg~~y-----~~g~g~~~~~~~A~~~~~~a~~~~~~~ 276 (342)
....|. +|+ .|.++-+. .+-+.+- |++ .-.+..|.+- ....+ .++-|...-+.++...-++
T Consensus 924 w~dayriaktegg---~n~~k~v~flwaksig-gdaavkllnk~gll~~~id~a~d~~---afd~afdlari~~k~k~~~ 996 (1636)
T KOG3616|consen 924 WEDAYRIAKTEGG---ANAEKHVAFLWAKSIG-GDAAVKLLNKHGLLEAAIDFAADNC---AFDFAFDLARIAAKDKMGE 996 (1636)
T ss_pred HHHHHHHHhcccc---ccHHHHHHHHHHHhhC-cHHHHHHHHhhhhHHHHhhhhhccc---chhhHHHHHHHhhhccCcc
Confidence 111121 111 12222221 2222221 111 1122223222 11122 5667777777777766677
Q ss_pred HHHHHHHHhhhcCCHHHHHHHHHHHHHcC
Q 019340 277 AQLEHGLGLFTEGEMMKAVVYLELATRAG 305 (342)
Q Consensus 277 a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~ 305 (342)
....++.-+...|.+++|-+.|-.|+.++
T Consensus 997 vhlk~a~~ledegk~edaskhyveaikln 1025 (1636)
T KOG3616|consen 997 VHLKLAMFLEDEGKFEDASKHYVEAIKLN 1025 (1636)
T ss_pred chhHHhhhhhhccchhhhhHhhHHHhhcc
Confidence 88889998999999999999999998765
No 289
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=87.84 E-value=6.5 Score=30.44 Aligned_cols=43 Identities=16% Similarity=-0.041 Sum_probs=35.8
Q ss_pred cCCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCcHHHHHHHH
Q 019340 272 CGHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKN 314 (342)
Q Consensus 272 ~~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~~~ 314 (342)
..+++.+..+|.+|...|+..++-+.+++|++.|-.+|+.+..
T Consensus 117 ~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~kEAC~nIn 159 (161)
T PF09205_consen 117 EINPEFLVKIANAYKKLGNTREANELLKEACEKGLKEACRNIN 159 (161)
T ss_dssp -S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchHHHHHHhc
Confidence 3568888999999999999999999999999999999997653
No 290
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=87.72 E-value=6.4 Score=28.30 Aligned_cols=47 Identities=15% Similarity=0.166 Sum_probs=31.6
Q ss_pred CCHHHHHHHHHHHHhC----C-------CHHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 019340 119 KNLDKALDSFLKGAAR----G-------STLAMVDAGLMYWEMDKKEAAISLYRQAAV 165 (342)
Q Consensus 119 ~~~~~A~~~~~~A~~~----~-------~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~ 165 (342)
+|+..|++.+.+..+. + ...+..++|.++...|++++|+..++.|+.
T Consensus 12 ~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 12 GDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred CCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 5777777666666542 1 134566777777777777888777777764
No 291
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.56 E-value=14 Score=30.11 Aligned_cols=111 Identities=18% Similarity=0.239 Sum_probs=56.1
Q ss_pred CCHHHHHHHHHHHHhCC----CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC-CCHHHHHHH-----HHHHHcCCccCHH
Q 019340 119 KNLDKALDSFLKGAARG----STLAMVDAGLMYWEMDKKEAAISLYRQAAVL-GDPAGQFNL-----GISYLQAQPANAE 188 (342)
Q Consensus 119 ~~~~~A~~~~~~A~~~~----~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-~~~~a~~~L-----g~~~~~g~~~~~~ 188 (342)
+..++|+.-|....+-| ...+.+..|.+..+.|+...|+.+|..+..- ..|.....+ +.++. +.+.|+
T Consensus 72 ~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLv--D~gsy~ 149 (221)
T COG4649 72 NKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLV--DNGSYD 149 (221)
T ss_pred CCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHh--ccccHH
Confidence 44555666665554443 2345566666666667777777777665533 333333222 33333 455555
Q ss_pred HHHHHHHHHHHcCCH---HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Q 019340 189 EAVKLLYQASIAGHV---RAQYQLALCLHRGRGVDFNLQEAARWYLRAAE 235 (342)
Q Consensus 189 ~A~~~~~~a~~~~~~---~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~ 235 (342)
....-.+.....+++ .+.-.||..-.. .+++.+|..||...++
T Consensus 150 dV~srvepLa~d~n~mR~sArEALglAa~k----agd~a~A~~~F~qia~ 195 (221)
T COG4649 150 DVSSRVEPLAGDGNPMRHSAREALGLAAYK----AGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHhhhccCCCChhHHHHHHHHhHHHHh----ccchHHHHHHHHHHHc
Confidence 544444443333332 233345544444 4456666666655544
No 292
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=87.11 E-value=30 Score=33.39 Aligned_cols=173 Identities=12% Similarity=-0.031 Sum_probs=100.6
Q ss_pred HHHHHHhC--CCHHHHHHHHHHHhcCCC--------------HHHHHHHHHHHHhCCC---HHHHHHHHHHHHc-CCccC
Q 019340 127 SFLKGAAR--GSTLAMVDAGLMYWEMDK--------------KEAAISLYRQAAVLGD---PAGQFNLGISYLQ-AQPAN 186 (342)
Q Consensus 127 ~~~~A~~~--~~~~a~~~lg~~~~~~~~--------------~~~A~~~~~~a~~~~~---~~a~~~Lg~~~~~-g~~~~ 186 (342)
.|++++.. -+++.|+..+..+...++ .+++...|+++++.-. .-.++.++..-.. .+...
T Consensus 267 ayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~ 346 (656)
T KOG1914|consen 267 AYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNK 346 (656)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccch
Confidence 34555542 366666655554444444 7888999999886522 2222222222110 01114
Q ss_pred HHHHHHHHHHHHHcC---CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCcccHHHHH
Q 019340 187 AEEAVKLLYQASIAG---HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQAR 263 (342)
Q Consensus 187 ~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~ 263 (342)
.++-..++.+++... ..-++.++=..-.. ..-.+.|...|.+|-+.+...-+..++.++..-. ..+|..-|.
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR----~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~-cskD~~~Af 421 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRR----AEGLKAARKIFKKAREDKRTRHHVFVAAALMEYY-CSKDKETAF 421 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHH----hhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHH-hcCChhHHH
Confidence 666777777766532 23334443333333 2236788899999987643322222222221110 245999999
Q ss_pred HHHHHHHHc-CC-HHHHHHHHHHhhhcCCHHHHHHHHHHHHHc
Q 019340 264 KWMKRAADC-GH-GKAQLEHGLGLFTEGEMMKAVVYLELATRA 304 (342)
Q Consensus 264 ~~~~~a~~~-~~-~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~ 304 (342)
+.|+..+.. ++ +.--+.....+...++-..+...|++++..
T Consensus 422 rIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 422 RIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS 464 (656)
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc
Confidence 999999987 44 444455556667789999999999999887
No 293
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=86.98 E-value=2.4 Score=37.21 Aligned_cols=58 Identities=14% Similarity=0.175 Sum_probs=28.3
Q ss_pred HHHHHHHHHHc--CCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHc--CcHHHHHHHHHHHhh
Q 019340 262 ARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRA--GETAADHVKNVILQQ 319 (342)
Q Consensus 262 A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~~~~~~~~ 319 (342)
|+.||.+|+.. +....++.||.++...|+.-.|+.||-|++-. ..+.|..++..+...
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 44555555543 34455555555555555555555555555432 233444444444433
No 294
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.73 E-value=7.5 Score=37.99 Aligned_cols=80 Identities=15% Similarity=0.203 Sum_probs=64.8
Q ss_pred cCCHHHHHHHHHHHHhC--------CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCccCH
Q 019340 118 RKNLDKALDSFLKGAAR--------GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLG--DPAGQFNLGISYLQAQPANA 187 (342)
Q Consensus 118 ~~~~~~A~~~~~~A~~~--------~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~~~~g~~~~~ 187 (342)
.+++..++++|+..+.- ..+..+..++.+|......++|+++++.|=+.+ ++-..+.+-.+.. ..++.
T Consensus 367 ~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~--~E~~S 444 (872)
T KOG4814|consen 367 MEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFL--AEDKS 444 (872)
T ss_pred HHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHH--Hhcch
Confidence 37899999999998763 235677889999999999999999999997665 7777777777766 67888
Q ss_pred HHHHHHHHHHHH
Q 019340 188 EEAVKLLYQASI 199 (342)
Q Consensus 188 ~~A~~~~~~a~~ 199 (342)
++|+.+..+...
T Consensus 445 e~AL~~~~~~~s 456 (872)
T KOG4814|consen 445 EEALTCLQKIKS 456 (872)
T ss_pred HHHHHHHHHHHh
Confidence 999988887643
No 295
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=86.38 E-value=2.9 Score=37.08 Aligned_cols=61 Identities=23% Similarity=0.193 Sum_probs=49.9
Q ss_pred hcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHH--cCCHHHHHHHH
Q 019340 148 WEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASI--AGHVRAQYQLA 210 (342)
Q Consensus 148 ~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg 210 (342)
...|+.++|..+|+.|+.. .+++++..+|.... ..++.-+|-.||-+++. +++.+|..+-.
T Consensus 127 ~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E--~~~~iv~ADq~Y~~ALtisP~nseALvnR~ 191 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALALAPTNPQILIEMGQFRE--MHNEIVEADQCYVKALTISPGNSEALVNRA 191 (472)
T ss_pred HhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHH--hhhhhHhhhhhhheeeeeCCCchHHHhhhh
Confidence 3678999999999998765 88999999999887 66889999999999754 67777766543
No 296
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=85.91 E-value=4.4 Score=25.80 Aligned_cols=36 Identities=8% Similarity=-0.024 Sum_probs=20.2
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHh--CCCHHHHHH
Q 019340 139 AMVDAGLMYWEMDKKEAAISLYRQAAV--LGDPAGQFN 174 (342)
Q Consensus 139 a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~ 174 (342)
.++.++..+...|++++|..+.+.+++ +++..+...
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L 40 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSL 40 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 345666666666777777776666653 345555443
No 297
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=85.69 E-value=20 Score=34.02 Aligned_cols=117 Identities=17% Similarity=0.157 Sum_probs=63.1
Q ss_pred HHHHHh-CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHcCCHHHH
Q 019340 128 FLKGAA-RGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQFNLGISYLQAQPANAEEAVKLLYQASIAGHVRAQ 206 (342)
Q Consensus 128 ~~~A~~-~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~ 206 (342)
.+.|++ ..|++..+.|+. +.|+++.|.+. |-+.+++.-|-.||...+ ..++++.|..+|+++- +...
T Consensus 311 ~e~AL~~~~D~~~rFeLAl---~lg~L~~A~~~---a~~~~~~~~W~~Lg~~AL--~~g~~~lAe~c~~k~~---d~~~- 378 (443)
T PF04053_consen 311 PELALQFVTDPDHRFELAL---QLGNLDIALEI---AKELDDPEKWKQLGDEAL--RQGNIELAEECYQKAK---DFSG- 378 (443)
T ss_dssp HHHHHHHSS-HHHHHHHHH---HCT-HHHHHHH---CCCCSTHHHHHHHHHHHH--HTTBHHHHHHHHHHCT----HHH-
T ss_pred HHHHHhhcCChHHHhHHHH---hcCCHHHHHHH---HHhcCcHHHHHHHHHHHH--HcCCHHHHHHHHHhhc---Cccc-
Confidence 334444 246666666653 56777777654 334467778888888888 7788888888887752 2222
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHH
Q 019340 207 YQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRA 269 (342)
Q Consensus 207 ~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a 269 (342)
|..+|.- .+|.++=.+.-..|...++....+.-+.+. | |.++..+.+.++
T Consensus 379 --L~lLy~~----~g~~~~L~kl~~~a~~~~~~n~af~~~~~l----g---d~~~cv~lL~~~ 428 (443)
T PF04053_consen 379 --LLLLYSS----TGDREKLSKLAKIAEERGDINIAFQAALLL----G---DVEECVDLLIET 428 (443)
T ss_dssp --HHHHHHH----CT-HHHHHHHHHHHHHTT-HHHHHHHHHHH----T----HHHHHHHHHHT
T ss_pred --cHHHHHH----hCCHHHHHHHHHHHHHccCHHHHHHHHHHc----C---CHHHHHHHHHHc
Confidence 2223332 334444445555555556555544444433 2 566666555543
No 298
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=85.02 E-value=3.7 Score=36.79 Aligned_cols=86 Identities=14% Similarity=0.143 Sum_probs=63.6
Q ss_pred HHHHHcCCCCcCCHHHHHHHHHHHHhCC------CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHH
Q 019340 108 GKRFKHGRGVRKNLDKALDSFLKGAARG------STLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISY 179 (342)
Q Consensus 108 g~~y~~g~g~~~~~~~A~~~~~~A~~~~------~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~ 179 (342)
|.-|.. .+++..|+..|.+++... ++..+.|-+-+....|++..|+.=..+|+.. .+..+++.-+.|+
T Consensus 88 GN~~fK----~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~ 163 (390)
T KOG0551|consen 88 GNEYFK----EKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCL 163 (390)
T ss_pred hHHHHH----hhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHH
Confidence 555555 478888888888888752 2334567777777788888888888888754 6677888888888
Q ss_pred HcCCccCHHHHHHHHHHHHH
Q 019340 180 LQAQPANAEEAVKLLYQASI 199 (342)
Q Consensus 180 ~~g~~~~~~~A~~~~~~a~~ 199 (342)
+ ....+.+|+.|.+..+.
T Consensus 164 ~--eLe~~~~a~nw~ee~~~ 181 (390)
T KOG0551|consen 164 L--ELERFAEAVNWCEEGLQ 181 (390)
T ss_pred H--HHHHHHHHHHHHhhhhh
Confidence 8 77788888888877644
No 299
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=84.83 E-value=1.5 Score=42.09 Aligned_cols=84 Identities=12% Similarity=-0.042 Sum_probs=69.6
Q ss_pred ccHHHHHHHHHHHHHcCCH---HHHHHHHHHhhhcCCHHHHHHHHHHHHHcCcHHHHHHHHHHHhhcChhcHHHHHHHHH
Q 019340 257 LSHRQARKWMKRAADCGHG---KAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVD 333 (342)
Q Consensus 257 ~~~~~A~~~~~~a~~~~~~---~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~ 333 (342)
.|...|+.|+..|....+. -...+|++++..-+-..+|-.++.+++.+.+.+..+.+.....++-..+.+.|++.++
T Consensus 621 gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~ 700 (886)
T KOG4507|consen 621 GNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFR 700 (886)
T ss_pred CCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHH
Confidence 3999999999999876443 3568899999888888899999999999888888888887777888888999998888
Q ss_pred hhhcCCC
Q 019340 334 SWRAMPS 340 (342)
Q Consensus 334 ~~~~~~~ 340 (342)
...+..|
T Consensus 701 ~a~~~~~ 707 (886)
T KOG4507|consen 701 QALKLTT 707 (886)
T ss_pred HHHhcCC
Confidence 8776655
No 300
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=84.61 E-value=3.2 Score=37.14 Aligned_cols=90 Identities=21% Similarity=0.222 Sum_probs=70.1
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhC--CCH----HHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHH
Q 019340 140 MVDAGLMYWEMDKKEAAISLYRQAAVL--GDP----AGQFNLGISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLAL 211 (342)
Q Consensus 140 ~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~----~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~ 211 (342)
+-.-|.-|+..+++..|+..|.+++.. +|+ -.+.|-+-+.+ -.+++..++.-..+++.. .+..+++.=+.
T Consensus 84 ~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~--~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Ak 161 (390)
T KOG0551|consen 84 YKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQL--YLGNYRSALNDCSAALKLKPTHLKAYIRGAK 161 (390)
T ss_pred HHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHH--HHHHHHHHHHHHHHHHhcCcchhhhhhhhhH
Confidence 345788888999999999999999866 333 34556666666 678999999999888764 57888898899
Q ss_pred HHhcCCCCCCCHHHHHHHHHHHHH
Q 019340 212 CLHRGRGVDFNLQEAARWYLRAAE 235 (342)
Q Consensus 212 ~~~~g~~~~~~~~~A~~~~~~A~~ 235 (342)
|+.. ...+.+|..|.+..+.
T Consensus 162 c~~e----Le~~~~a~nw~ee~~~ 181 (390)
T KOG0551|consen 162 CLLE----LERFAEAVNWCEEGLQ 181 (390)
T ss_pred HHHH----HHHHHHHHHHHhhhhh
Confidence 9887 6677888888877654
No 301
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=84.55 E-value=1.3 Score=41.38 Aligned_cols=105 Identities=22% Similarity=0.119 Sum_probs=75.0
Q ss_pred CCCHHHHHHHHHHHHHCCCHHH--HHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCC--HHHHHHHHHHhhhcCCHHHHH
Q 019340 220 DFNLQEAARWYLRAAEGGYVRA--MYNTSLCYSFGEGLPLSHRQARKWMKRAADCGH--GKAQLEHGLGLFTEGEMMKAV 295 (342)
Q Consensus 220 ~~~~~~A~~~~~~A~~~~~~~a--~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~Lg~~~~~~~~~~~A~ 295 (342)
.++++.|+..|.||++...-.| +-+-+..+.. ..++..|+.-+.+|++.++ ..+++.-|.+....+.+.+|+
T Consensus 17 ~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK----~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~ 92 (476)
T KOG0376|consen 17 DKVFDVAVDLYSKAIELDPNCAIYFANRALAHLK----VESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKAL 92 (476)
T ss_pred cchHHHHHHHHHHHHhcCCcceeeechhhhhhee----echhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHH
Confidence 6789999999999999865333 3344455533 3399999999999998754 567788888888899999999
Q ss_pred HHHHHHHHcCcH--HHHHHHHHHHhhcChhcHHHH
Q 019340 296 VYLELATRAGET--AADHVKNVILQQLSATSRDRA 328 (342)
Q Consensus 296 ~~~~~a~~~~~~--~a~~~~~~~~~~~~~~~~~~a 328 (342)
.-|+......+. ++......+....+...++.+
T Consensus 93 ~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~~~fe~a 127 (476)
T KOG0376|consen 93 LDLEKVKKLAPNDPDATRKIDECNKIVSEEKFEKA 127 (476)
T ss_pred HHHHHhhhcCcCcHHHHHHHHHHHHHHHHHhhhhc
Confidence 999998877554 444444444444444344333
No 302
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.48 E-value=57 Score=34.23 Aligned_cols=60 Identities=17% Similarity=0.172 Sum_probs=37.9
Q ss_pred CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Q 019340 167 GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAE 235 (342)
Q Consensus 167 ~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~ 235 (342)
+.|..|..||.+-. +.+...+|++.|-|+ ++|..+.+.-..... .+.+++-++++..|-.
T Consensus 1102 n~p~vWsqlakAQL--~~~~v~dAieSyika---dDps~y~eVi~~a~~----~~~~edLv~yL~MaRk 1161 (1666)
T KOG0985|consen 1102 NEPAVWSQLAKAQL--QGGLVKDAIESYIKA---DDPSNYLEVIDVASR----TGKYEDLVKYLLMARK 1161 (1666)
T ss_pred CChHHHHHHHHHHH--hcCchHHHHHHHHhc---CCcHHHHHHHHHHHh----cCcHHHHHHHHHHHHH
Confidence 56677777777777 566777777777655 455555555555544 4566666666665543
No 303
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=84.32 E-value=0.44 Score=42.61 Aligned_cols=49 Identities=16% Similarity=-0.085 Sum_probs=24.0
Q ss_pred ccCHHHHHHHHHHHHHcCCH--HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC
Q 019340 184 PANAEEAVKLLYQASIAGHV--RAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG 236 (342)
Q Consensus 184 ~~~~~~A~~~~~~a~~~~~~--~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~ 236 (342)
.|++++|+..|-++++...+ ..+..-+.++.. .+....|++-+..|++.
T Consensus 127 ~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lk----l~kp~~airD~d~A~ei 177 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELNPPLAILYAKRASVFLK----LKKPNAAIRDCDFAIEI 177 (377)
T ss_pred CcchhhhhcccccccccCCchhhhcccccceeee----ccCCchhhhhhhhhhcc
Confidence 45566666666666655432 222233444433 44455555555555544
No 304
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=84.25 E-value=20 Score=34.10 Aligned_cols=163 Identities=18% Similarity=0.156 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC-C-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 019340 101 AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR-G-STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQFNLGIS 178 (342)
Q Consensus 101 a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~-~-~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~ 178 (342)
....|.++.+ .+|++++....+..--. . +.+-...++..+...|-++.|++. ..|++.-+.|+.-
T Consensus 264 ~~~~fk~av~-------~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~------~~D~~~rFeLAl~ 330 (443)
T PF04053_consen 264 SELEFKTAVL-------RGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPELALQF------VTDPDHRFELALQ 330 (443)
T ss_dssp HHHHHHHHHH-------TT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHH------SS-HHHHHHHHHH
T ss_pred HHHHHHHHHH-------cCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHHHHHhh------cCChHHHhHHHHh
Confidence 3445555544 36777766666422111 1 233345566666677777776654 2566666665543
Q ss_pred HHcCCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCccc
Q 019340 179 YLQAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLS 258 (342)
Q Consensus 179 ~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~y~~g~g~~~~ 258 (342)
.|+.+.|.+..+ +.+++.-|-.||..... .+|.+.|.++|+++- -+-.|..+|.. .| |
T Consensus 331 -----lg~L~~A~~~a~---~~~~~~~W~~Lg~~AL~----~g~~~lAe~c~~k~~------d~~~L~lLy~~-~g---~ 388 (443)
T PF04053_consen 331 -----LGNLDIALEIAK---ELDDPEKWKQLGDEALR----QGNIELAEECYQKAK------DFSGLLLLYSS-TG---D 388 (443)
T ss_dssp -----CT-HHHHHHHCC---CCSTHHHHHHHHHHHHH----TTBHHHHHHHHHHCT-------HHHHHHHHHH-CT----
T ss_pred -----cCCHHHHHHHHH---hcCcHHHHHHHHHHHHH----cCCHHHHHHHHHhhc------CccccHHHHHH-hC---C
Confidence 456666654432 23467788888888877 678888888888853 23334444432 12 6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhhhcCCHHHHHHHHHHH
Q 019340 259 HRQARKWMKRAADCGHGKAQLEHGLGLFTEGEMMKAVVYLELA 301 (342)
Q Consensus 259 ~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a 301 (342)
.++=.+..+.|...++....+.-+. -.|+.++.+..+..+
T Consensus 389 ~~~L~kl~~~a~~~~~~n~af~~~~---~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 389 REKLSKLAKIAEERGDINIAFQAAL---LLGDVEECVDLLIET 428 (443)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHH---HHT-HHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHH---HcCCHHHHHHHHHHc
Confidence 6555566666666666555443322 246666666555543
No 305
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=84.06 E-value=16 Score=28.37 Aligned_cols=40 Identities=25% Similarity=0.214 Sum_probs=18.3
Q ss_pred CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHcCCHHHHHH
Q 019340 167 GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIAGHVRAQYQ 208 (342)
Q Consensus 167 ~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~ 208 (342)
.+|+-+..+|.+|. ..|+..++-+.+.+|.+.|-.+|+.+
T Consensus 118 ~~p~~L~kia~Ay~--klg~~r~~~ell~~ACekG~kEAC~n 157 (161)
T PF09205_consen 118 INPEFLVKIANAYK--KLGNTREANELLKEACEKGLKEACRN 157 (161)
T ss_dssp S-HHHHHHHHHHHH--HTT-HHHHHHHHHHHHHTT-HHHHHH
T ss_pred CCHHHHHHHHHHHH--HhcchhhHHHHHHHHHHhchHHHHHH
Confidence 34444444555544 44455555555555555555554443
No 306
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=83.37 E-value=8.9 Score=33.50 Aligned_cols=58 Identities=12% Similarity=0.051 Sum_probs=44.5
Q ss_pred HHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHc
Q 019340 124 ALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQ 181 (342)
Q Consensus 124 A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~ 181 (342)
|..+|.+|+.. ++...+.+||.++...+|.=.|+.+|-+++-- ..+.|..||..++..
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 67888888885 56778888999998889999999999888743 557788888888773
No 307
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=83.05 E-value=9.7 Score=27.24 Aligned_cols=41 Identities=10% Similarity=-0.087 Sum_probs=25.0
Q ss_pred HHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC
Q 019340 126 DSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL 166 (342)
Q Consensus 126 ~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~ 166 (342)
.-++++++. ++..+.+.++..+...|++++|+..+-..+..
T Consensus 9 ~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 9 AALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp HHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 334444443 46677777777777777777777777776654
No 308
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=82.91 E-value=6 Score=39.37 Aligned_cols=65 Identities=22% Similarity=0.216 Sum_probs=44.0
Q ss_pred CCcCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHhcC---------CCHHHHHHHHHHHHhCCC-HHHHHHHHHHHH
Q 019340 116 GVRKNLDKALDSFLKGAARG---STLAMVDAGLMYWEM---------DKKEAAISLYRQAAVLGD-PAGQFNLGISYL 180 (342)
Q Consensus 116 g~~~~~~~A~~~~~~A~~~~---~~~a~~~lg~~~~~~---------~~~~~A~~~~~~a~~~~~-~~a~~~Lg~~~~ 180 (342)
+.+||.++|+.....+++.. .++.+...|+||... +..+.|++||++|.+... -.+=.|++.++.
T Consensus 254 Nr~GDRakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~sGIN~atLL~ 331 (1226)
T KOG4279|consen 254 NRPGDRAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEYSGINLATLLR 331 (1226)
T ss_pred CCCccHHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhhccccHHHHHH
Confidence 45788888888888888863 456677778888553 457788889998886632 223334444444
No 309
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=82.62 E-value=2.7 Score=35.65 Aligned_cols=51 Identities=12% Similarity=0.072 Sum_probs=46.0
Q ss_pred cCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCC
Q 019340 118 RKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGD 168 (342)
Q Consensus 118 ~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~ 168 (342)
.+|.+.|.+.|.+|+++ .+...|+.+|......|+++.|...|++.++.+.
T Consensus 8 ~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp 60 (287)
T COG4976 8 SGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDP 60 (287)
T ss_pred cCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCc
Confidence 57899999999999997 5888999999999999999999999999998743
No 310
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=82.55 E-value=11 Score=37.55 Aligned_cols=114 Identities=13% Similarity=0.100 Sum_probs=75.5
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCC-------CHHHHHHHHHHHHc-CCccCHHHHHHHHHHHHHcC---CHH
Q 019340 136 STLAMVDAGLMYWEMDKKEAAISLYRQAAVLG-------DPAGQFNLGISYLQ-AQPANAEEAVKLLYQASIAG---HVR 204 (342)
Q Consensus 136 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~-------~~~a~~~Lg~~~~~-g~~~~~~~A~~~~~~a~~~~---~~~ 204 (342)
+++...++-.-|....||+.-+++-+..-..- .....|..+.++.. ...||.++|+.....+++.. .|+
T Consensus 200 ~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vapD 279 (1226)
T KOG4279|consen 200 HPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAPD 279 (1226)
T ss_pred CHHHHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCCc
Confidence 45666677777888889998888776543332 12222233333332 46899999999999988864 577
Q ss_pred HHHHHHHHHhcC-----CCCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHH
Q 019340 205 AQYQLALCLHRG-----RGVDFNLQEAARWYLRAAEGG-YVRAMYNTSLCY 249 (342)
Q Consensus 205 a~~~lg~~~~~g-----~~~~~~~~~A~~~~~~A~~~~-~~~a~~~lg~~y 249 (342)
.+...|.+|.+- -......+.|++||++|.+.. ...+-.|++.++
T Consensus 280 m~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~sGIN~atLL 330 (1226)
T KOG4279|consen 280 MYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEYSGINLATLL 330 (1226)
T ss_pred eeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhhccccHHHHH
Confidence 888889998642 122345678999999998864 333445666555
No 311
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=82.47 E-value=2.6 Score=29.00 Aligned_cols=32 Identities=28% Similarity=0.302 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 019340 121 LDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAV 165 (342)
Q Consensus 121 ~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~ 165 (342)
.++|+.+..+|++.+ ..|++++|+.+|.+|++
T Consensus 3 l~kai~Lv~~A~~eD-------------~~gny~eA~~lY~~ale 34 (75)
T cd02680 3 LERAHFLVTQAFDED-------------EKGNAEEAIELYTEAVE 34 (75)
T ss_pred HHHHHHHHHHHHHhh-------------HhhhHHHHHHHHHHHHH
Confidence 445666666654432 34666666666666665
No 312
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=82.22 E-value=26 Score=28.63 Aligned_cols=138 Identities=14% Similarity=0.054 Sum_probs=92.9
Q ss_pred HHHHhhCCChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC-C-----HHHHHHH
Q 019340 70 NKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG-S-----TLAMVDA 143 (342)
Q Consensus 70 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~-~-----~~a~~~l 143 (342)
..+..+-..+...+|..-+....+.....-...+.+..|-+..+ +++...|+..|....... . ..+.+.-
T Consensus 63 laAL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~----kgdta~AV~aFdeia~dt~~P~~~rd~ARlra 138 (221)
T COG4649 63 LAALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQ----KGDTAAAVAAFDEIAADTSIPQIGRDLARLRA 138 (221)
T ss_pred HHHHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhh----cccHHHHHHHHHHHhccCCCcchhhHHHHHHH
Confidence 33333334455556654444444433332234677778888777 799999999999987753 2 3455666
Q ss_pred HHHHhcCCCHHHHHHHHHHHHhCCCH---HHHHHHHHHHHcCCccCHHHHHHHHHHHHHc-CCHHHHHHHHHHH
Q 019340 144 GLMYWEMDKKEAAISLYRQAAVLGDP---AGQFNLGISYLQAQPANAEEAVKLLYQASIA-GHVRAQYQLALCL 213 (342)
Q Consensus 144 g~~~~~~~~~~~A~~~~~~a~~~~~~---~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~-~~~~a~~~lg~~~ 213 (342)
+.++...|-|++-..-.+...-.++| .+--.||..-+ ..|++.+|..+|...++. +-|+...+-+++.
T Consensus 139 a~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~--kagd~a~A~~~F~qia~Da~aprnirqRAq~m 210 (221)
T COG4649 139 AYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAY--KAGDFAKAKSWFVQIANDAQAPRNIRQRAQIM 210 (221)
T ss_pred HHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHH--hccchHHHHHHHHHHHccccCcHHHHHHHHHH
Confidence 77788889999988877776655554 35556888888 889999999999997764 3455554444443
No 313
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=81.99 E-value=2.3 Score=39.83 Aligned_cols=93 Identities=15% Similarity=0.131 Sum_probs=64.6
Q ss_pred cCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCccCHHHHHHH
Q 019340 118 RKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVLG--DPAGQFNLGISYLQAQPANAEEAVKL 193 (342)
Q Consensus 118 ~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~~~~g~~~~~~~A~~~ 193 (342)
.++++.|+.+|.+|++++ .+...-+-+..+...+++..|+.=+.+|++.+ ...+++.-|.++. ..+.+.+|+.-
T Consensus 17 ~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m--~l~~~~~A~~~ 94 (476)
T KOG0376|consen 17 DKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVM--ALGEFKKALLD 94 (476)
T ss_pred cchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHH--hHHHHHHHHHH
Confidence 368888888888888875 33334456677778888888888888888764 3456666667766 66677888888
Q ss_pred HHHHHH--cCCHHHHHHHHHH
Q 019340 194 LYQASI--AGHVRAQYQLALC 212 (342)
Q Consensus 194 ~~~a~~--~~~~~a~~~lg~~ 212 (342)
|++... ++++.+.-.+-.|
T Consensus 95 l~~~~~l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 95 LEKVKKLAPNDPDATRKIDEC 115 (476)
T ss_pred HHHhhhcCcCcHHHHHHHHHH
Confidence 877543 5566665555444
No 314
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=81.24 E-value=65 Score=32.54 Aligned_cols=14 Identities=7% Similarity=0.173 Sum_probs=9.4
Q ss_pred CccCHHHHHHHHHH
Q 019340 183 QPANAEEAVKLLYQ 196 (342)
Q Consensus 183 ~~~~~~~A~~~~~~ 196 (342)
...|+++|++||++
T Consensus 673 ki~d~dkale~fkk 686 (1636)
T KOG3616|consen 673 KIHDFDKALECFKK 686 (1636)
T ss_pred HhhCHHHHHHHHHc
Confidence 35677777777765
No 315
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=80.89 E-value=22 Score=27.71 Aligned_cols=63 Identities=5% Similarity=0.022 Sum_probs=42.6
Q ss_pred CHHHHHHHHHHHhcC---CCHHHHHHHHHHHHhC----CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc
Q 019340 136 STLAMVDAGLMYWEM---DKKEAAISLYRQAAVL----GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA 200 (342)
Q Consensus 136 ~~~a~~~lg~~~~~~---~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~ 200 (342)
....+++++.++... .|..+.+..++..+.. +.-+..|.|+..+. ..++|++++.|....++.
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~y--RlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHY--RLKEYSKSLRYVDALLET 100 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHH--HHhhHHHHHHHHHHHHhh
Confidence 345566777766554 4667777777777753 33467777777777 777788887777776653
No 316
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.79 E-value=48 Score=33.74 Aligned_cols=58 Identities=10% Similarity=0.046 Sum_probs=37.4
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHhC-CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHcC
Q 019340 138 LAMVDAGLMYWEMDKKEAAISLYRQAAVL-GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIAG 201 (342)
Q Consensus 138 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~~ 201 (342)
..+...|.-++..||+++|+.+|.+.+.. ..+..+-. |. +.+....=..|++...+.+
T Consensus 369 ~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~Vi~k----fL--daq~IknLt~YLe~L~~~g 427 (933)
T KOG2114|consen 369 EIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSEVIKK----FL--DAQRIKNLTSYLEALHKKG 427 (933)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHHHHHH----hc--CHHHHHHHHHHHHHHHHcc
Confidence 34556677777889999999999988866 33333332 23 4455555566666666655
No 317
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=80.68 E-value=38 Score=29.58 Aligned_cols=26 Identities=31% Similarity=0.298 Sum_probs=12.8
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCHHHHHHHH
Q 019340 201 GHVRAQYQLALCLHRGRGVDFNLQEAARWY 230 (342)
Q Consensus 201 ~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~ 230 (342)
|+|+-+..+|..|.. .+++.+|..+|
T Consensus 88 Gdp~LH~~~a~~~~~----e~~~~~A~~Hf 113 (260)
T PF04190_consen 88 GDPELHHLLAEKLWK----EGNYYEAERHF 113 (260)
T ss_dssp --HHHHHHHHHHHHH----TT-HHHHHHHH
T ss_pred CCHHHHHHHHHHHHh----hccHHHHHHHH
Confidence 455556666666555 44555555554
No 318
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=80.34 E-value=50 Score=30.67 Aligned_cols=82 Identities=12% Similarity=-0.028 Sum_probs=36.7
Q ss_pred cCCHHHHHHHHHHHHhC--CC--HHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHc-CCccCHHHHHH
Q 019340 118 RKNLDKALDSFLKGAAR--GS--TLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQFNLGISYLQ-AQPANAEEAVK 192 (342)
Q Consensus 118 ~~~~~~A~~~~~~A~~~--~~--~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~-g~~~~~~~A~~ 192 (342)
.||-..|...-.++..+ .| +.+++.-+..-.-.|+++.|.+-|+-.++.-...- ..|=.+|.. ...|+.+.|+.
T Consensus 97 AGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtRl-lGLRgLyleAqr~GareaAr~ 175 (531)
T COG3898 97 AGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPETRL-LGLRGLYLEAQRLGAREAARH 175 (531)
T ss_pred cCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcChHHHH-HhHHHHHHHHHhcccHHHHHH
Confidence 35555555555555432 12 22233333333445666666666655443211111 111122221 23566666666
Q ss_pred HHHHHHHc
Q 019340 193 LLYQASIA 200 (342)
Q Consensus 193 ~~~~a~~~ 200 (342)
|-+++...
T Consensus 176 yAe~Aa~~ 183 (531)
T COG3898 176 YAERAAEK 183 (531)
T ss_pred HHHHHHhh
Confidence 66665554
No 319
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.00 E-value=56 Score=32.34 Aligned_cols=88 Identities=16% Similarity=0.137 Sum_probs=52.7
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhC--------CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHcC--CHHHHHHHH
Q 019340 141 VDAGLMYWEMDKKEAAISLYRQAAVL--------GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIAG--HVRAQYQLA 210 (342)
Q Consensus 141 ~~lg~~~~~~~~~~~A~~~~~~a~~~--------~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~~--~~~a~~~lg 210 (342)
.+-+.-+++..+|..++++|...+.- ..+..+.+|..||. ...+.+.|+++++.|-+-+ ++-.+..+-
T Consensus 358 Wn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL--~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~ 435 (872)
T KOG4814|consen 358 WNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYL--KLEQLDNAVEVYQEAEEVDRQSPLCQLLML 435 (872)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 34444455567788888888877632 33566777777777 6777778888887775543 444444443
Q ss_pred HHHhcCCCCCCCHHHHHHHHHHHH
Q 019340 211 LCLHRGRGVDFNLQEAARWYLRAA 234 (342)
Q Consensus 211 ~~~~~g~~~~~~~~~A~~~~~~A~ 234 (342)
.+... ..+-.+|+....+..
T Consensus 436 ~~~~~----E~~Se~AL~~~~~~~ 455 (872)
T KOG4814|consen 436 QSFLA----EDKSEEALTCLQKIK 455 (872)
T ss_pred HHHHH----hcchHHHHHHHHHHH
Confidence 33332 334555655555443
No 320
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=78.97 E-value=3.3 Score=37.26 Aligned_cols=81 Identities=20% Similarity=0.150 Sum_probs=49.1
Q ss_pred CCHHHHHHHHHHHHhCCCH--HHHHHHHHHHhcCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCccCHHHHHHHH
Q 019340 119 KNLDKALDSFLKGAARGST--LAMVDAGLMYWEMDKKEAAISLYRQAAVLG--DPAGQFNLGISYLQAQPANAEEAVKLL 194 (342)
Q Consensus 119 ~~~~~A~~~~~~A~~~~~~--~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~~~~g~~~~~~~A~~~~ 194 (342)
+++++|+++|..|++++.+ ..+..-+.+++..+....|++=|..|++.+ ....+-.-|.+.. ..++.++|-..+
T Consensus 128 G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~r--llg~~e~aa~dl 205 (377)
T KOG1308|consen 128 GEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAER--LLGNWEEAAHDL 205 (377)
T ss_pred cchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHH--HhhchHHHHHHH
Confidence 4567777777777776533 333456666666777777777777666552 2333444455544 556666666666
Q ss_pred HHHHHcC
Q 019340 195 YQASIAG 201 (342)
Q Consensus 195 ~~a~~~~ 201 (342)
..+++.+
T Consensus 206 ~~a~kld 212 (377)
T KOG1308|consen 206 ALACKLD 212 (377)
T ss_pred HHHHhcc
Confidence 6666655
No 321
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=78.54 E-value=5.6 Score=33.82 Aligned_cols=65 Identities=31% Similarity=0.248 Sum_probs=53.0
Q ss_pred HHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHcC---CHHHHHHHHHH
Q 019340 146 MYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIAG---HVRAQYQLALC 212 (342)
Q Consensus 146 ~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~ 212 (342)
.....+|.+-|.+.|.+++++ .+...|+.+|.... ..++++.|.+.|++.++.+ +.-+-..|+.+
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~e--kag~~daAa~a~~~~L~ldp~D~~gaa~kLa~l 73 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTE--KAGEFDAAAAAYEEVLELDPEDHGGAALKLAVL 73 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhh--hcccHHHHHHHHHHHHcCCcccccchhhhHHhh
Confidence 445678999999999999987 78889999999988 8899999999999998854 34445555443
No 322
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=77.67 E-value=57 Score=37.23 Aligned_cols=79 Identities=9% Similarity=-0.004 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHhC---------CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCccCHHHHH
Q 019340 121 LDKALDSFLKGAAR---------GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQFNLGISYLQAQPANAEEAV 191 (342)
Q Consensus 121 ~~~A~~~~~~A~~~---------~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~g~~~~~~~A~ 191 (342)
..+-+-.++++... .-.+.+.+.+++-...|.++.|-.++-+|.+..-+++....+.... ..|+...|+
T Consensus 1645 ~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r~~~i~~E~AK~lW--~~gd~~~Al 1722 (2382)
T KOG0890|consen 1645 IKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESRLPEIVLERAKLLW--QTGDELNAL 1722 (2382)
T ss_pred HHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcccchHHHHHHHHHH--hhccHHHHH
Confidence 44455555555432 2456788888888889999999999999999999999999999998 888999999
Q ss_pred HHHHHHHHcC
Q 019340 192 KLLYQASIAG 201 (342)
Q Consensus 192 ~~~~~a~~~~ 201 (342)
..+++.++..
T Consensus 1723 ~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1723 SVLQEILSKN 1732 (2382)
T ss_pred HHHHHHHHhh
Confidence 9999988643
No 323
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=76.71 E-value=25 Score=26.21 Aligned_cols=21 Identities=10% Similarity=0.165 Sum_probs=12.7
Q ss_pred HHHHhcCCCHHHHHHHHHHHH
Q 019340 144 GLMYWEMDKKEAAISLYRQAA 164 (342)
Q Consensus 144 g~~~~~~~~~~~A~~~~~~a~ 164 (342)
+.-++..||.-+|++..+..+
T Consensus 3 A~~~~~rGnhiKAL~iied~i 23 (111)
T PF04781_consen 3 AKDYFARGNHIKALEIIEDLI 23 (111)
T ss_pred HHHHHHccCHHHHHHHHHHHH
Confidence 344555666666666666655
No 324
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=76.64 E-value=81 Score=36.10 Aligned_cols=136 Identities=12% Similarity=0.160 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCH-----------
Q 019340 101 AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDP----------- 169 (342)
Q Consensus 101 a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~----------- 169 (342)
+..+.+++.+.+. .|.++.|....-.|.+..-+.+....+...+..||...|+..+++.++...+
T Consensus 1670 ge~wLqsAriaR~----aG~~q~A~nall~A~e~r~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~ 1745 (2382)
T KOG0890|consen 1670 GECWLQSARIARL----AGHLQRAQNALLNAKESRLPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQ 1745 (2382)
T ss_pred HHHHHHHHHHHHh----cccHHHHHHHHHhhhhcccchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccch
Confidence 4566777777765 5899999999999999999999999999999999999999999999854222
Q ss_pred --------HHHHHHHHHHHcCCccCHHHHHHHHHHHHH--cCCHHHHHHHHHHHhc------CC--CCCCCH---HHHHH
Q 019340 170 --------AGQFNLGISYLQAQPANAEEAVKLLYQASI--AGHVRAQYQLALCLHR------GR--GVDFNL---QEAAR 228 (342)
Q Consensus 170 --------~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~------g~--~~~~~~---~~A~~ 228 (342)
.++..++........-....-+++|..+.+ +.....+|.||..|.. +. ...++. -.++.
T Consensus 1746 ~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy~kll~~~~~~~~E~~g~~~~~l~~~~ 1825 (2382)
T KOG0890|consen 1746 SVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLGKYYDKLLEDYKSNKMEKSGRVLSLLKAIY 1825 (2382)
T ss_pred hhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHHHHHHHHhhhhhcccccccccHHHHHHHHH
Confidence 233334333331112344566778887655 3355667777755431 00 111222 23677
Q ss_pred HHHHHHHCCCHH
Q 019340 229 WYLRAAEGGYVR 240 (342)
Q Consensus 229 ~~~~A~~~~~~~ 240 (342)
.|.+|+..|+..
T Consensus 1826 ~~~~sl~yg~~~ 1837 (2382)
T KOG0890|consen 1826 FFGRALYYGNQH 1837 (2382)
T ss_pred HHHHHHHhcchh
Confidence 778888877543
No 325
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=76.43 E-value=5 Score=27.64 Aligned_cols=34 Identities=18% Similarity=0.094 Sum_probs=20.3
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHc
Q 019340 258 SHRQARKWMKRAADCGHGKAQLEHGLGLFTEGEMMKAVVYLELATRA 304 (342)
Q Consensus 258 ~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~ 304 (342)
+.++|+..+++|++. ...|++++|+.+|..|++.
T Consensus 2 ~l~kai~Lv~~A~~e-------------D~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 2 DLERAHFLVTQAFDE-------------DEKGNAEEAIELYTEAVEL 35 (75)
T ss_pred CHHHHHHHHHHHHHh-------------hHhhhHHHHHHHHHHHHHH
Confidence 344555555555443 2356777777777777664
No 326
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=76.41 E-value=7.5 Score=22.47 Aligned_cols=21 Identities=14% Similarity=0.292 Sum_probs=10.7
Q ss_pred HHHHHHHHHhcCCCHHHHHHH
Q 019340 139 AMVDAGLMYWEMDKKEAAISL 159 (342)
Q Consensus 139 a~~~lg~~~~~~~~~~~A~~~ 159 (342)
.++.+|..+...|++++|+++
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHH
Confidence 344455555555555555555
No 327
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=75.00 E-value=93 Score=30.97 Aligned_cols=27 Identities=11% Similarity=0.092 Sum_probs=14.9
Q ss_pred HHHHHHHHHHh-cCCCHHHHHHHHHHHH
Q 019340 138 LAMVDAGLMYW-EMDKKEAAISLYRQAA 164 (342)
Q Consensus 138 ~a~~~lg~~~~-~~~~~~~A~~~~~~a~ 164 (342)
.+.+.+|.++. +..+++.|..++.|+.
T Consensus 60 ~~~l~la~iL~~eT~n~~~Ae~~L~k~~ 87 (608)
T PF10345_consen 60 RVRLRLASILLEETENLDLAETYLEKAI 87 (608)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34455555554 3455666666666654
No 328
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=74.97 E-value=6.7 Score=27.33 Aligned_cols=18 Identities=33% Similarity=0.377 Sum_probs=11.8
Q ss_pred hcCCCHHHHHHHHHHHHh
Q 019340 148 WEMDKKEAAISLYRQAAV 165 (342)
Q Consensus 148 ~~~~~~~~A~~~~~~a~~ 165 (342)
.+.|+.++|+.+|++++.
T Consensus 19 dE~g~~e~Al~~Y~~gi~ 36 (79)
T cd02679 19 DEWGDKEQALAHYRKGLR 36 (79)
T ss_pred hhcCCHHHHHHHHHHHHH
Confidence 345677777777777653
No 329
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=74.83 E-value=26 Score=24.42 Aligned_cols=56 Identities=16% Similarity=0.195 Sum_probs=34.3
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHc-CCccCHHHHHHHHHH
Q 019340 141 VDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQ-AQPANAEEAVKLLYQ 196 (342)
Q Consensus 141 ~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~-g~~~~~~~A~~~~~~ 196 (342)
..-|.-++...+.++|+..++++++. +.++.+.-||.++.- .+.|++.+.+++-.+
T Consensus 10 ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~ 68 (80)
T PF10579_consen 10 IEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQ 68 (80)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555677778888888888765 445555555544431 256777777666554
No 330
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=74.62 E-value=8.1 Score=26.69 Aligned_cols=19 Identities=32% Similarity=0.354 Sum_probs=12.1
Q ss_pred hhhcCCHHHHHHHHHHHHH
Q 019340 285 LFTEGEMMKAVVYLELATR 303 (342)
Q Consensus 285 ~~~~~~~~~A~~~~~~a~~ 303 (342)
....|++++|+.+|..|++
T Consensus 16 ~D~~g~y~eA~~~Y~~aie 34 (76)
T cd02681 16 RDQEGRYSEAVFYYKEAAQ 34 (76)
T ss_pred HHHccCHHHHHHHHHHHHH
Confidence 4446666666666666654
No 331
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=74.34 E-value=5.8 Score=27.43 Aligned_cols=17 Identities=24% Similarity=0.370 Sum_probs=10.9
Q ss_pred cCCCHHHHHHHHHHHHh
Q 019340 149 EMDKKEAAISLYRQAAV 165 (342)
Q Consensus 149 ~~~~~~~A~~~~~~a~~ 165 (342)
..|++++|+.+|..+++
T Consensus 18 ~~g~y~eA~~~Y~~aie 34 (76)
T cd02681 18 QEGRYSEAVFYYKEAAQ 34 (76)
T ss_pred HccCHHHHHHHHHHHHH
Confidence 45666666666666654
No 332
>PF13041 PPR_2: PPR repeat family
Probab=74.24 E-value=12 Score=22.95 Aligned_cols=39 Identities=10% Similarity=0.058 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhhhcCCHHHHHHHHHHHHHcC-cHHHHHHH
Q 019340 275 GKAQLEHGLGLFTEGEMMKAVVYLELATRAG-ETAADHVK 313 (342)
Q Consensus 275 ~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~-~~~a~~~~ 313 (342)
...+..+-..|.+.|++++|.+.|+.-.+.| .++..++.
T Consensus 3 ~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~ 42 (50)
T PF13041_consen 3 VVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYN 42 (50)
T ss_pred hHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 4456777778888999999999999988876 34444443
No 333
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=72.13 E-value=30 Score=30.58 Aligned_cols=167 Identities=15% Similarity=0.032 Sum_probs=100.9
Q ss_pred CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC-----CCHHH-HHHHHHHHHcCCccCHHHHHHHHHHHHHcC----CH
Q 019340 134 RGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL-----GDPAG-QFNLGISYLQAQPANAEEAVKLLYQASIAG----HV 203 (342)
Q Consensus 134 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-----~~~~a-~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~~----~~ 203 (342)
.+.+.+.-.++.+++...+.+.|..-++..+-. ++.+. ..-=+..+..+...+...-+..|......+ ..
T Consensus 37 ~n~~vsRe~l~~llWe~~~~~~Ar~nLR~~l~~lRk~l~~~~~il~t~~~~~~L~~~~~~~iD~~~F~~~~~a~~~~~~~ 116 (280)
T COG3629 37 RNKPVSREKLAGLLWEDSDPSRARANLRTTLHNLRKLLGDGDVILATEGPGVTLNPGADITIDAGRFEAEARAGLKARAG 116 (280)
T ss_pred CCCcccHHHHHHhccCCCChhHHHHHHHHHHHHHHHhcCCcceeeecCCCceEecCccceeecHHHHHHhHhcccchhhh
Confidence 344555555666677776666666666655421 21110 000011111112223222334444433332 12
Q ss_pred HHHHHHHHHHhcCCC-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcC--CHHHHHH
Q 019340 204 RAQYQLALCLHRGRG-VDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCG--HGKAQLE 280 (342)
Q Consensus 204 ~a~~~lg~~~~~g~~-~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~ 280 (342)
...-..|..+..|-- ....+..=+.-.+++.+.....++..+...+.. .++.+.+...+++-+..+ +...+..
T Consensus 117 ~~~~~~~~~~~~g~~~~d~~f~~WV~~~R~~l~e~~~~~l~~lae~~~~----~~~~~~~~~~l~~Li~~dp~~E~~~~~ 192 (280)
T COG3629 117 LRFEQAGELLSEGPVLGDDRFDEWVLEQRRALEELFIKALTKLAEALIA----CGRADAVIEHLERLIELDPYDEPAYLR 192 (280)
T ss_pred HHHHHHHHHhhcCCcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cccHHHHHHHHHHHHhcCccchHHHHH
Confidence 233344544443321 133478888888888888889999999999865 338899999999988764 4678888
Q ss_pred HHHHhhhcCCHHHHHHHHHHHHHc
Q 019340 281 HGLGLFTEGEMMKAVVYLELATRA 304 (342)
Q Consensus 281 Lg~~~~~~~~~~~A~~~~~~a~~~ 304 (342)
|-..|...|+...|+..|++....
T Consensus 193 lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 193 LMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHcCCchHHHHHHHHHHHH
Confidence 888899999999999999988654
No 334
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=71.94 E-value=29 Score=23.83 Aligned_cols=15 Identities=13% Similarity=0.264 Sum_probs=8.8
Q ss_pred CCHHHHHHHHHHHHH
Q 019340 289 GEMMKAVVYLELATR 303 (342)
Q Consensus 289 ~~~~~A~~~~~~a~~ 303 (342)
|++++|..+|..+++
T Consensus 20 ~~y~eA~~~Y~~~i~ 34 (75)
T cd02677 20 GDYEAAFEFYRAGVD 34 (75)
T ss_pred hhHHHHHHHHHHHHH
Confidence 556666666665554
No 335
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=71.78 E-value=7.2 Score=22.89 Aligned_cols=29 Identities=14% Similarity=-0.062 Sum_probs=23.3
Q ss_pred HHHHHHHHHhhhcCCHHHHHHHHHHHHHc
Q 019340 276 KAQLEHGLGLFTEGEMMKAVVYLELATRA 304 (342)
Q Consensus 276 ~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~ 304 (342)
..+..||.+-...++|++|+.=|++++++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 34667888888888999999888888765
No 336
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=71.23 E-value=14 Score=38.42 Aligned_cols=90 Identities=20% Similarity=0.184 Sum_probs=56.7
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHhC-----CCHHHHHHHHHHHHc-----CCccCHHHHHHHHHHHHH-cCCHHHHHHHH
Q 019340 142 DAGLMYWEMDKKEAAISLYRQAAVL-----GDPAGQFNLGISYLQ-----AQPANAEEAVKLLYQASI-AGHVRAQYQLA 210 (342)
Q Consensus 142 ~lg~~~~~~~~~~~A~~~~~~a~~~-----~~~~a~~~Lg~~~~~-----g~~~~~~~A~~~~~~a~~-~~~~~a~~~lg 210 (342)
.+...+...+.+++|+..|++..+. .--+|++.+|..... |++.++.+|+.-|++.-. .+-|--+..-+
T Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 559 (932)
T PRK13184 480 AVPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGGVGAPLEYLGKA 559 (932)
T ss_pred cCcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCCchHHHhHH
Confidence 3444555556777777777777754 335677777776653 334567777777776543 23444455555
Q ss_pred HHHhcCCCCCCCHHHHHHHHHHHHH
Q 019340 211 LCLHRGRGVDFNLQEAARWYLRAAE 235 (342)
Q Consensus 211 ~~~~~g~~~~~~~~~A~~~~~~A~~ 235 (342)
.+|.. .+++++-+++|..|+.
T Consensus 560 ~~~~~----~~~~~~~~~~~~~~~~ 580 (932)
T PRK13184 560 LVYQR----LGEYNEEIKSLLLALK 580 (932)
T ss_pred HHHHH----hhhHHHHHHHHHHHHH
Confidence 56655 6677777777777765
No 337
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=70.77 E-value=38 Score=30.55 Aligned_cols=94 Identities=23% Similarity=0.258 Sum_probs=58.0
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC----CC----HHHHHHHHHHHHcCC----ccCHHHHHHHHHHHHHcC-C
Q 019340 136 STLAMVDAGLMYWEMDKKEAAISLYRQAAVL----GD----PAGQFNLGISYLQAQ----PANAEEAVKLLYQASIAG-H 202 (342)
Q Consensus 136 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----~~----~~a~~~Lg~~~~~g~----~~~~~~A~~~~~~a~~~~-~ 202 (342)
-.+++.+.+..|.+.||.+.|.+++++..+. |. .-....||..|. + ....++|...+++..+-+ -
T Consensus 103 v~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~--D~~lV~~~iekak~liE~GgDWeRr 180 (393)
T KOG0687|consen 103 VREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYL--DHDLVTESIEKAKSLIEEGGDWERR 180 (393)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhc--cHHHHHHHHHHHHHHHHhCCChhhh
Confidence 4578899999999999999999998876543 33 345566777776 4 334455555554443211 0
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Q 019340 203 VRAQYQLALCLHRGRGVDFNLQEAARWYLRAAE 235 (342)
Q Consensus 203 ~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~ 235 (342)
-+-...-|..+.. ..|+++|..+|..++.
T Consensus 181 NRlKvY~Gly~ms----vR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 181 NRLKVYQGLYCMS----VRNFKEAADLFLDSVS 209 (393)
T ss_pred hhHHHHHHHHHHH----HHhHHHHHHHHHHHcc
Confidence 1111122333333 4578888888877764
No 338
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=70.42 E-value=7.7 Score=22.75 Aligned_cols=25 Identities=28% Similarity=0.187 Sum_probs=12.8
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHH
Q 019340 140 MVDAGLMYWEMDKKEAAISLYRQAA 164 (342)
Q Consensus 140 ~~~lg~~~~~~~~~~~A~~~~~~a~ 164 (342)
+..||.+-....++++|+.=|++++
T Consensus 4 ~~~Lgeisle~e~f~qA~~D~~~aL 28 (38)
T PF10516_consen 4 YDLLGEISLENENFEQAIEDYEKAL 28 (38)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3445555555555555555555444
No 339
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=70.22 E-value=63 Score=29.20 Aligned_cols=92 Identities=14% Similarity=0.063 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc----C----CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCCHH
Q 019340 169 PAGQFNLGISYLQAQPANAEEAVKLLYQASIA----G----HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVR 240 (342)
Q Consensus 169 ~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~----~----~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~~~~~ 240 (342)
.+++.+.+..|- ..+|.+.|++++.+..+. | ..-....||.+|.+..-+.+..++|...+++- ||.+
T Consensus 104 ~ea~~~kaeYyc--qigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~G---gDWe 178 (393)
T KOG0687|consen 104 REAMLRKAEYYC--QIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEG---GDWE 178 (393)
T ss_pred HHHHHHHHHHHH--HhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhC---CChh
Confidence 578899999888 889999999999886543 3 34556788999876544455666666666553 3333
Q ss_pred ------HHHHHHHHHHcCCCCcccHHHHHHHHHHHHH
Q 019340 241 ------AMYNTSLCYSFGEGLPLSHRQARKWMKRAAD 271 (342)
Q Consensus 241 ------a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~ 271 (342)
++..+=.+. -.|+++|...|-.++.
T Consensus 179 RrNRlKvY~Gly~ms------vR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 179 RRNRLKVYQGLYCMS------VRNFKEAADLFLDSVS 209 (393)
T ss_pred hhhhHHHHHHHHHHH------HHhHHHHHHHHHHHcc
Confidence 222222222 2378888888877765
No 340
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=69.24 E-value=65 Score=29.02 Aligned_cols=90 Identities=18% Similarity=0.226 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--C--------CHHHHHHHHHHHhcCCCHHHHHHHHHHHH----hCC
Q 019340 102 MVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--G--------STLAMVDAGLMYWEMDKKEAAISLYRQAA----VLG 167 (342)
Q Consensus 102 ~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~--------~~~a~~~lg~~~~~~~~~~~A~~~~~~a~----~~~ 167 (342)
.....|+-+|.. .+++..|...+.- +.. | -...+..+|++|.+.+|..+|..+..++. +..
T Consensus 104 ~irl~LAsiYE~----Eq~~~~aaq~L~~-I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~~ 178 (399)
T KOG1497|consen 104 SIRLHLASIYEK----EQNWRDAAQVLVG-IPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAESS 178 (399)
T ss_pred HHHHHHHHHHHH----hhhHHHHHHHHhc-cCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhccc
Confidence 456778999988 5788887766542 222 1 12356789999999999999999999874 346
Q ss_pred CHHHHHHHHHHHHc--CCccCHHHHHHHHHH
Q 019340 168 DPAGQFNLGISYLQ--AQPANAEEAVKLLYQ 196 (342)
Q Consensus 168 ~~~a~~~Lg~~~~~--g~~~~~~~A~~~~~~ 196 (342)
++.....+-.||.. ...+++-+|-..|-+
T Consensus 179 Ne~Lqie~kvc~ARvlD~krkFlEAAqrYye 209 (399)
T KOG1497|consen 179 NEQLQIEYKVCYARVLDYKRKFLEAAQRYYE 209 (399)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666655555542 134566555555444
No 341
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=67.82 E-value=10 Score=26.22 Aligned_cols=17 Identities=12% Similarity=0.225 Sum_probs=10.2
Q ss_pred cCCCHHHHHHHHHHHHh
Q 019340 149 EMDKKEAAISLYRQAAV 165 (342)
Q Consensus 149 ~~~~~~~A~~~~~~a~~ 165 (342)
..|++++|+.+|.++++
T Consensus 18 ~~g~y~eAl~~Y~~aie 34 (77)
T cd02683 18 QEGRFQEALVCYQEGID 34 (77)
T ss_pred HhccHHHHHHHHHHHHH
Confidence 45666666666666554
No 342
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=67.60 E-value=89 Score=27.66 Aligned_cols=93 Identities=14% Similarity=0.066 Sum_probs=71.8
Q ss_pred HHHHHHHHcCC-CCcCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHc
Q 019340 105 LRWGKRFKHGR-GVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQ 181 (342)
Q Consensus 105 ~~lg~~y~~g~-g~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~ 181 (342)
-..|..+..|. ....++..=+.-.+++.+.-...++..++..+...++++.++..+++.++. -+..++..|-..|.
T Consensus 120 ~~~~~~~~~g~~~~d~~f~~WV~~~R~~l~e~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~- 198 (280)
T COG3629 120 EQAGELLSEGPVLGDDRFDEWVLEQRRALEELFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYL- 198 (280)
T ss_pred HHHHHHhhcCCcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHH-
Confidence 33444444333 223457788888888888788889999999999999999999999998766 55677888888888
Q ss_pred CCccCHHHHHHHHHHHHH
Q 019340 182 AQPANAEEAVKLLYQASI 199 (342)
Q Consensus 182 g~~~~~~~A~~~~~~a~~ 199 (342)
..|+...|+..|++.-+
T Consensus 199 -~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 199 -VNGRQSAAIRAYRQLKK 215 (280)
T ss_pred -HcCCchHHHHHHHHHHH
Confidence 78899999999987654
No 343
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=67.25 E-value=43 Score=23.88 Aligned_cols=52 Identities=12% Similarity=0.035 Sum_probs=35.9
Q ss_pred cCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC----CHHHHHHHHHHHhcCCC
Q 019340 97 PLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG----STLAMVDAGLMYWEMDK 152 (342)
Q Consensus 97 ~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~----~~~a~~~lg~~~~~~~~ 152 (342)
+.++..+.+.||..+.. .+++++|++.+...+..+ +..+.-.+=.++...|.
T Consensus 18 ~P~D~~ar~~lA~~~~~----~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 18 NPDDLDARYALADALLA----AGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp STT-HHHHHHHHHHHHH----TT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred CCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 34588999999999999 499999999999999863 34454444445544444
No 344
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.25 E-value=1.3e+02 Score=29.24 Aligned_cols=198 Identities=15% Similarity=0.104 Sum_probs=118.0
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC----CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHcC-CHHHH--HH
Q 019340 136 STLAMVDAGLMYWEMDKKEAAISLYRQAAVL----GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIAG-HVRAQ--YQ 208 (342)
Q Consensus 136 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~~-~~~a~--~~ 208 (342)
.+.-.++-+.++...|+.+.|+..+...++. -..-..+.+|.++. ...++..|..++....+.. -..+. |.
T Consensus 266 ga~wll~~ar~l~~~g~~eaa~~~~~~~v~~~~kQ~~~l~~fE~aw~~v--~~~~~~~aad~~~~L~desdWS~a~Y~Yf 343 (546)
T KOG3783|consen 266 GALWLLMEARILSIKGNSEAAIDMESLSIPIRMKQVKSLMVFERAWLSV--GQHQYSRAADSFDLLRDESDWSHAFYTYF 343 (546)
T ss_pred CccHHHHHHHHHHHcccHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH--HHHHHHHHhhHHHHHHhhhhhhHHHHHHH
Confidence 4444556666776777799999999988872 12335566777776 6778899999998887764 34443 44
Q ss_pred HHHHHhcCC----CCCCCHHHHHHHHHHHHH------------------------CC-----CHHH--HHHHHHHHHcC-
Q 019340 209 LALCLHRGR----GVDFNLQEAARWYLRAAE------------------------GG-----YVRA--MYNTSLCYSFG- 252 (342)
Q Consensus 209 lg~~~~~g~----~~~~~~~~A~~~~~~A~~------------------------~~-----~~~a--~~~lg~~y~~g- 252 (342)
.|-||...+ +..+|.+++..+++..-+ .+ .+.+ ++.+..+| +|
T Consensus 344 a~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f~~RKverf~~~~~~~~~~~la~P~~El~Y~W-ngf 422 (546)
T KOG3783|consen 344 AGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKFIVRKVERFVKRGPLNASILLASPYYELAYFW-NGF 422 (546)
T ss_pred HHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHhccccccccccccchHHHHHHHH-hhc
Confidence 556665422 112344444444443311 01 1122 46677777 44
Q ss_pred CCCcccHHH-HHHHHHH-HHHcCCHHH--HHHHHHHhhhcCCHHHHHHHHHHHHHc---------CcHHHHHHHHHHHhh
Q 019340 253 EGLPLSHRQ-ARKWMKR-AADCGHGKA--QLEHGLGLFTEGEMMKAVVYLELATRA---------GETAADHVKNVILQQ 319 (342)
Q Consensus 253 ~g~~~~~~~-A~~~~~~-a~~~~~~~a--~~~Lg~~~~~~~~~~~A~~~~~~a~~~---------~~~~a~~~~~~~~~~ 319 (342)
....++..+ ...-++. .++..+... ++-+|.++...|+.+.|..+|...++. -.|.|++-++.+...
T Consensus 423 ~~~s~~~l~k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~ 502 (546)
T KOG3783|consen 423 SRMSKNELEKMRAELENPKIDDSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWD 502 (546)
T ss_pred ccCChhhHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHh
Confidence 222223222 1111111 111112222 367899999999999999999999843 267788888877776
Q ss_pred cChhcHHHHHHHHHhhhc
Q 019340 320 LSATSRDRAMLVVDSWRA 337 (342)
Q Consensus 320 ~~~~~~~~a~~~~~~~~~ 337 (342)
..+ ...++++++.+.+.
T Consensus 503 ~~g-~~~e~~~~L~kAr~ 519 (546)
T KOG3783|consen 503 LGG-GLKEARALLLKARE 519 (546)
T ss_pred ccc-ChHHHHHHHHHHHh
Confidence 655 47777777666554
No 345
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=66.30 E-value=53 Score=28.40 Aligned_cols=74 Identities=14% Similarity=0.127 Sum_probs=44.1
Q ss_pred CHHHHHHHHHHHHhC----C----CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC----CCH----HHHHHHHHHHHcCC
Q 019340 120 NLDKALDSFLKGAAR----G----STLAMVDAGLMYWEMDKKEAAISLYRQAAVL----GDP----AGQFNLGISYLQAQ 183 (342)
Q Consensus 120 ~~~~A~~~~~~A~~~----~----~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----~~~----~a~~~Lg~~~~~g~ 183 (342)
.....++++.+|.+. + -......+|..|...|++++|+++|+.++.. +.. .....|-.|+. .
T Consensus 153 hs~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~--~ 230 (247)
T PF11817_consen 153 HSKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAK--R 230 (247)
T ss_pred hHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH--H
Confidence 344456666666553 1 2334568888999999999999999988633 322 23334444554 4
Q ss_pred ccCHHHHHHHHH
Q 019340 184 PANAEEAVKLLY 195 (342)
Q Consensus 184 ~~~~~~A~~~~~ 195 (342)
.++.+..+.+--
T Consensus 231 ~~~~~~~l~~~l 242 (247)
T PF11817_consen 231 LGDVEDYLTTSL 242 (247)
T ss_pred hCCHHHHHHHHH
Confidence 555555554443
No 346
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=66.10 E-value=28 Score=36.40 Aligned_cols=84 Identities=21% Similarity=0.145 Sum_probs=53.5
Q ss_pred CCHHHHHHHHHHHHHC--C---CHHHHHHHHHHHHcC---CCCcccHHHHHHHHHHHHHc-CCHHHHHHHHHHhhhcCCH
Q 019340 221 FNLQEAARWYLRAAEG--G---YVRAMYNTSLCYSFG---EGLPLSHRQARKWMKRAADC-GHGKAQLEHGLGLFTEGEM 291 (342)
Q Consensus 221 ~~~~~A~~~~~~A~~~--~---~~~a~~~lg~~y~~g---~g~~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~~~~~~~~ 291 (342)
+.++.|+..|++..+. | --+|++.+|...... .|-+.++.+|+.-|.+.... +-+--+.--+.+|...|++
T Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 568 (932)
T PRK13184 489 KLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGGVGAPLEYLGKALVYQRLGEY 568 (932)
T ss_pred HHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCCchHHHhHHHHHHHhhhH
Confidence 5667777777776653 2 346777777776543 22245667777766665443 3334455566677888888
Q ss_pred HHHHHHHHHHHHc
Q 019340 292 MKAVVYLELATRA 304 (342)
Q Consensus 292 ~~A~~~~~~a~~~ 304 (342)
++-+++|..|++.
T Consensus 569 ~~~~~~~~~~~~~ 581 (932)
T PRK13184 569 NEEIKSLLLALKR 581 (932)
T ss_pred HHHHHHHHHHHHh
Confidence 8888888888764
No 347
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=65.99 E-value=1.5e+02 Score=29.83 Aligned_cols=130 Identities=13% Similarity=-0.010 Sum_probs=76.9
Q ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHc--------CCccCHHHHHHHHHHHHHcCCH-HH
Q 019340 135 GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQFNLGISYLQ--------AQPANAEEAVKLLYQASIAGHV-RA 205 (342)
Q Consensus 135 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~--------g~~~~~~~A~~~~~~a~~~~~~-~a 205 (342)
.++..|..|+......-+++.|...|-+..+-.-..-.-.|+.++-. +--|.+++|.+.|..+-..+.+ +.
T Consensus 690 PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrDLAiel 769 (1189)
T KOG2041|consen 690 PHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRDLAIEL 769 (1189)
T ss_pred CchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhhhhHHH
Confidence 48888999998888888888888888776544333333444444431 1246788888888765333211 11
Q ss_pred ------HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc-CCHHHH
Q 019340 206 ------QYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC-GHGKAQ 278 (342)
Q Consensus 206 ------~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~-~~~~a~ 278 (342)
|+..-.++..|.+...| .+--+|+.++|..+.. ....++|.++|...-.. +..+++
T Consensus 770 r~klgDwfrV~qL~r~g~~d~dD-------------~~~e~A~r~ig~~fa~----~~~We~A~~yY~~~~~~e~~~ecl 832 (1189)
T KOG2041|consen 770 RKKLGDWFRVYQLIRNGGSDDDD-------------EGKEDAFRNIGETFAE----MMEWEEAAKYYSYCGDTENQIECL 832 (1189)
T ss_pred HHhhhhHHHHHHHHHccCCCcch-------------HHHHHHHHHHHHHHHH----HHHHHHHHHHHHhccchHhHHHHH
Confidence 23333344444432111 1224677788877754 33788888888887665 445555
Q ss_pred HHH
Q 019340 279 LEH 281 (342)
Q Consensus 279 ~~L 281 (342)
+.|
T Consensus 833 y~l 835 (1189)
T KOG2041|consen 833 YRL 835 (1189)
T ss_pred HHH
Confidence 433
No 348
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=65.41 E-value=31 Score=26.31 Aligned_cols=26 Identities=4% Similarity=0.086 Sum_probs=15.6
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHH
Q 019340 139 AMVDAGLMYWEMDKKEAAISLYRQAA 164 (342)
Q Consensus 139 a~~~lg~~~~~~~~~~~A~~~~~~a~ 164 (342)
++.+|+..+...||.+-.++|++-|-
T Consensus 52 sCHNLA~FWR~~gd~~yELkYLqlAS 77 (140)
T PF10952_consen 52 SCHNLADFWRSQGDSDYELKYLQLAS 77 (140)
T ss_pred HHhhHHHHHHHcCChHHHHHHHHHHH
Confidence 44566666666666666666665554
No 349
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=65.02 E-value=71 Score=25.62 Aligned_cols=66 Identities=14% Similarity=0.019 Sum_probs=37.6
Q ss_pred CHHHHHHHHHH--HHhCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCH
Q 019340 120 NLDKALDSFLK--GAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANA 187 (342)
Q Consensus 120 ~~~~A~~~~~~--A~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~ 187 (342)
+.+++...+.. .+..+.+..-.--|.++...|++.+|+..++...+. +.+.+...++.|+. ..+|+
T Consensus 25 ~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~--~~~D~ 94 (160)
T PF09613_consen 25 DPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLY--ALGDP 94 (160)
T ss_pred ChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHH--HcCCh
Confidence 44444444432 233356666666666666667777777766665544 44556666666666 44444
No 350
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=64.61 E-value=13 Score=19.67 Aligned_cols=28 Identities=14% Similarity=0.105 Sum_probs=19.0
Q ss_pred HHHHHHHhhhcCCHHHHHHHHHHHHHcC
Q 019340 278 QLEHGLGLFTEGEMMKAVVYLELATRAG 305 (342)
Q Consensus 278 ~~~Lg~~~~~~~~~~~A~~~~~~a~~~~ 305 (342)
+..+-..|...|++++|...|++-.+.|
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 4455666777788888888777765543
No 351
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=64.09 E-value=16 Score=33.73 Aligned_cols=58 Identities=16% Similarity=0.166 Sum_probs=35.4
Q ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHhhhcC------------CHHHHHHHHHHHHHcCcHHHHHHH
Q 019340 256 PLSHRQARKWMKRAADCGHGKAQLEHGLGLFTEG------------EMMKAVVYLELATRAGETAADHVK 313 (342)
Q Consensus 256 ~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~~~------------~~~~A~~~~~~a~~~~~~~a~~~~ 313 (342)
..-..+|+.|+++|-...+|..|.+++.++...| -|.+|...+++|-..++......+
T Consensus 331 ~~l~~~Al~yL~kA~d~ddPetWv~vAEa~I~LGNL~d~eS~eQe~~Y~eAE~iL~kAN~at~GKy~diL 400 (404)
T PF12753_consen 331 QELIKKALEYLKKAQDEDDPETWVDVAEAMIDLGNLYDNESKEQEKAYKEAEKILKKANKATNGKYQDIL 400 (404)
T ss_dssp HHHHHHHHHHHHHHHHS--TTHHHHHHHHHHHHHHH-SSHHH-HHHHHHHHHHHHHHHHHTT----HHHH
T ss_pred HHHHHHHHHHHHHhhccCChhHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHHhhccccchHHHH
Confidence 3457889999999998877766665555555543 366777777777666655444433
No 352
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=63.96 E-value=1.8e+02 Score=30.00 Aligned_cols=24 Identities=25% Similarity=0.209 Sum_probs=14.6
Q ss_pred HHHHHhhhcCCHHHHHHHHHHHHH
Q 019340 280 EHGLGLFTEGEMMKAVVYLELATR 303 (342)
Q Consensus 280 ~Lg~~~~~~~~~~~A~~~~~~a~~ 303 (342)
.|+.++...|+.++|.........
T Consensus 623 ~LA~l~~~~Gdl~~A~~~l~~~~~ 646 (894)
T COG2909 623 MLAELEFLRGDLDKALAQLDELER 646 (894)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Confidence 566666666666666666655543
No 353
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=63.94 E-value=1.6e+02 Score=29.32 Aligned_cols=180 Identities=19% Similarity=0.061 Sum_probs=87.9
Q ss_pred CCHHHHHHHHHHHHhC-----------CCHHHHHHHHHHHhcCCCHHHHHHHHH-------HH-HhCCC-----HHHHHH
Q 019340 119 KNLDKALDSFLKGAAR-----------GSTLAMVDAGLMYWEMDKKEAAISLYR-------QA-AVLGD-----PAGQFN 174 (342)
Q Consensus 119 ~~~~~A~~~~~~A~~~-----------~~~~a~~~lg~~~~~~~~~~~A~~~~~-------~a-~~~~~-----~~a~~~ 174 (342)
+++.+|.......... -.+..++-.|..+...|+.+.|..+|. .. ...+. .-+..|
T Consensus 375 ~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LN 454 (608)
T PF10345_consen 375 GDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALN 454 (608)
T ss_pred cCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHH
Confidence 5666666666655432 135667788888888888888888887 22 22221 235556
Q ss_pred HHHHHHcCCccCHHH--HHHHHHHHHH--cCCHHHHHHHHHHHh---cCCCCCCCHHHHHHHHHHHHHCC---------C
Q 019340 175 LGISYLQAQPANAEE--AVKLLYQASI--AGHVRAQYQLALCLH---RGRGVDFNLQEAARWYLRAAEGG---------Y 238 (342)
Q Consensus 175 Lg~~~~~g~~~~~~~--A~~~~~~a~~--~~~~~a~~~lg~~~~---~g~~~~~~~~~A~~~~~~A~~~~---------~ 238 (342)
+..++......+..+ .-..+...-. .+.+...+..+.++. .....+....++...+..++..- .
T Consensus 455 l~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~l~ 534 (608)
T PF10345_consen 455 LAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQLL 534 (608)
T ss_pred HHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccchHH
Confidence 666666422222222 4444443221 122222222222221 00111223335666665554321 1
Q ss_pred HHHHHHHHHHHHcCCCCcccHHHHHH----HHHHHHHc---CCH-H---HHHHHHHHhhhcCCHHHHHHHHHHHHH
Q 019340 239 VRAMYNTSLCYSFGEGLPLSHRQARK----WMKRAADC---GHG-K---AQLEHGLGLFTEGEMMKAVVYLELATR 303 (342)
Q Consensus 239 ~~a~~~lg~~y~~g~g~~~~~~~A~~----~~~~a~~~---~~~-~---a~~~Lg~~~~~~~~~~~A~~~~~~a~~ 303 (342)
.-+...+|..+..| +..+... .+..|-.. ++. . +.--+...|...|+.++|....++...
T Consensus 535 ~~~L~lm~~~lf~~-----~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 535 AILLNLMGHRLFEG-----DVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDR 605 (608)
T ss_pred HHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 23456677777533 3333333 33333333 111 1 112344556678888888877766543
No 354
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=63.88 E-value=75 Score=25.49 Aligned_cols=76 Identities=18% Similarity=0.165 Sum_probs=61.5
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHH--HHhCCCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHH
Q 019340 138 LAMVDAGLMYWEMDKKEAAISLYRQ--AAVLGDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLALCL 213 (342)
Q Consensus 138 ~a~~~lg~~~~~~~~~~~A~~~~~~--a~~~~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~ 213 (342)
.++..+...-...++.+++...+.- ++.++.++....-|.++. ..++..+|+..|+...+. +.+.+.-.++.|+
T Consensus 11 ~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i--~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL 88 (160)
T PF09613_consen 11 GGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHI--VRGDWDDALRLLRELEERAPGFPYAKALLALCL 88 (160)
T ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHH--HhCCHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence 3455666666677899999888876 467799999999999999 899999999999997664 4677888888888
Q ss_pred hc
Q 019340 214 HR 215 (342)
Q Consensus 214 ~~ 215 (342)
..
T Consensus 89 ~~ 90 (160)
T PF09613_consen 89 YA 90 (160)
T ss_pred HH
Confidence 75
No 355
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=63.79 E-value=17 Score=24.24 Aligned_cols=26 Identities=12% Similarity=0.098 Sum_probs=19.4
Q ss_pred HHHHHHhhhcCCHHHHHHHHHHHHHc
Q 019340 279 LEHGLGLFTEGEMMKAVVYLELATRA 304 (342)
Q Consensus 279 ~~Lg~~~~~~~~~~~A~~~~~~a~~~ 304 (342)
..-|.-....|++++|+.+|..|++.
T Consensus 9 ~~~Av~~D~~g~~~~A~~~Y~~ai~~ 34 (69)
T PF04212_consen 9 IKKAVEADEAGNYEEALELYKEAIEY 34 (69)
T ss_dssp HHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 34445566788999999999988764
No 356
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=63.70 E-value=18 Score=33.40 Aligned_cols=15 Identities=20% Similarity=0.262 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHCC
Q 019340 223 LQEAARWYLRAAEGG 237 (342)
Q Consensus 223 ~~~A~~~~~~A~~~~ 237 (342)
|.+|...+.+|-..+
T Consensus 378 Y~eAE~iL~kAN~at 392 (404)
T PF12753_consen 378 YKEAEKILKKANKAT 392 (404)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhcc
Confidence 556666666665543
No 357
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=63.54 E-value=1.2e+02 Score=28.27 Aligned_cols=125 Identities=15% Similarity=0.011 Sum_probs=69.3
Q ss_pred HHHHHHHhhCCChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCCCH-----HHHH
Q 019340 67 DVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGST-----LAMV 141 (342)
Q Consensus 67 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~-----~a~~ 141 (342)
..+.++..+|+.+++..|..++....+..+.......+..|..+|.. |- .-++++|.+.+++....... ..+.
T Consensus 133 ~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~-WD-~fd~~~A~~~l~~~~~~~~~l~~~~~~l~ 210 (379)
T PF09670_consen 133 REWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDA-WD-RFDHKEALEYLEKLLKRDKALNQEREGLK 210 (379)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHH-HH-ccCHHHHHHHHHHHHHHhhhhHhHHHHHH
Confidence 34567777899999999998888888763332223455555555554 11 35788899999887764211 1111
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHhCC-C---HHHHHHHHHHHHc----CCccCHHHHHHHHHHHHHc
Q 019340 142 DAGLMYWEMDKKEAAISLYRQAAVLG-D---PAGQFNLGISYLQ----AQPANAEEAVKLLYQASIA 200 (342)
Q Consensus 142 ~lg~~~~~~~~~~~A~~~~~~a~~~~-~---~~a~~~Lg~~~~~----g~~~~~~~A~~~~~~a~~~ 200 (342)
.+. +.-++...+....... . .-....++.++.. -..++|+.|+..+-++++.
T Consensus 211 ~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lEl 270 (379)
T PF09670_consen 211 ELV-------EVLKALESILSALEDKKQRQKKLYYALLADLLANAERRAAQGRYDDAVARLYRALEL 270 (379)
T ss_pred HHH-------HHHHHHHhhccchhhhhccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 111 1112222222211111 1 1144455555553 2367888888888888764
No 358
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=63.29 E-value=12 Score=25.74 Aligned_cols=15 Identities=33% Similarity=0.448 Sum_probs=9.4
Q ss_pred CCHHHHHHHHHHHHh
Q 019340 151 DKKEAAISLYRQAAV 165 (342)
Q Consensus 151 ~~~~~A~~~~~~a~~ 165 (342)
|++++|..+|..+++
T Consensus 20 ~~y~eA~~~Y~~~i~ 34 (75)
T cd02677 20 GDYEAAFEFYRAGVD 34 (75)
T ss_pred hhHHHHHHHHHHHHH
Confidence 666666666666654
No 359
>PF12854 PPR_1: PPR repeat
Probab=62.78 E-value=19 Score=20.20 Aligned_cols=27 Identities=11% Similarity=-0.047 Sum_probs=21.0
Q ss_pred CHHHHHHHHHHhhhcCCHHHHHHHHHH
Q 019340 274 HGKAQLEHGLGLFTEGEMMKAVVYLEL 300 (342)
Q Consensus 274 ~~~a~~~Lg~~~~~~~~~~~A~~~~~~ 300 (342)
+.-.+..|-..|.+.|+.++|+..|++
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 345667788888888999999888764
No 360
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=62.34 E-value=1.4e+02 Score=28.12 Aligned_cols=25 Identities=20% Similarity=0.214 Sum_probs=11.6
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHhC
Q 019340 142 DAGLMYWEMDKKEAAISLYRQAAVL 166 (342)
Q Consensus 142 ~lg~~~~~~~~~~~A~~~~~~a~~~ 166 (342)
.|..||+..++++-|+..-.+.+..
T Consensus 233 klv~CYL~~rkpdlALnh~hrsI~l 257 (569)
T PF15015_consen 233 KLVTCYLRMRKPDLALNHSHRSINL 257 (569)
T ss_pred HHHHhhhhcCCCchHHHHHhhhhhc
Confidence 3444444444444444444444433
No 361
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=61.81 E-value=79 Score=25.07 Aligned_cols=63 Identities=17% Similarity=0.120 Sum_probs=34.1
Q ss_pred CCCHHHHHHHHHH--HHhCCCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHcC--CHHHHHHHHHHHh
Q 019340 150 MDKKEAAISLYRQ--AAVLGDPAGQFNLGISYLQAQPANAEEAVKLLYQASIAG--HVRAQYQLALCLH 214 (342)
Q Consensus 150 ~~~~~~A~~~~~~--a~~~~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~ 214 (342)
..+++++...+.. .+.++.++....-|.++. ..++..+|+..|+...+.+ .+-+.-.++.|+.
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i--~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~ 89 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLI--ARGNYDEAARILRELLSSAGAPPYGKALLALCLN 89 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHH--HcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHH
Confidence 4555555555543 234455566666666666 5566666666666655543 2444445555544
No 362
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=61.46 E-value=16 Score=25.02 Aligned_cols=17 Identities=29% Similarity=0.421 Sum_probs=10.7
Q ss_pred cCCCHHHHHHHHHHHHh
Q 019340 149 EMDKKEAAISLYRQAAV 165 (342)
Q Consensus 149 ~~~~~~~A~~~~~~a~~ 165 (342)
..|++++|+.+|.++++
T Consensus 18 ~~g~y~eA~~~Y~~aie 34 (75)
T cd02678 18 NAGNYEEALRLYQHALE 34 (75)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 45666666666666654
No 363
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=60.77 E-value=42 Score=25.60 Aligned_cols=57 Identities=19% Similarity=0.065 Sum_probs=36.8
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhC-----------------CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHH
Q 019340 141 VDAGLMYWEMDKKEAAISLYRQAAVL-----------------GDPAGQFNLGISYLQAQPANAEEAVKLLYQASI 199 (342)
Q Consensus 141 ~~lg~~~~~~~~~~~A~~~~~~a~~~-----------------~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~ 199 (342)
..+|...+..+++-.++-.|++|+.. -..-.+-||+..+. ..+|.+-.++|++-|-+
T Consensus 5 tllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR--~~gd~~yELkYLqlASE 78 (140)
T PF10952_consen 5 TLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWR--SQGDSDYELKYLQLASE 78 (140)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHH--HcCChHHHHHHHHHHHH
Confidence 45666666667777777777776522 01235566777777 77777888888877654
No 364
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=60.60 E-value=17 Score=25.04 Aligned_cols=17 Identities=35% Similarity=0.384 Sum_probs=9.7
Q ss_pred cCCCHHHHHHHHHHHHh
Q 019340 149 EMDKKEAAISLYRQAAV 165 (342)
Q Consensus 149 ~~~~~~~A~~~~~~a~~ 165 (342)
..|++++|+.+|.++++
T Consensus 18 ~~g~y~eA~~lY~~ale 34 (75)
T cd02684 18 QRGDAAAALSLYCSALQ 34 (75)
T ss_pred HhccHHHHHHHHHHHHH
Confidence 34566666666655554
No 365
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=60.04 E-value=1.5e+02 Score=27.82 Aligned_cols=153 Identities=18% Similarity=0.067 Sum_probs=84.4
Q ss_pred CHHHH-HHHHHHHhcCCCHHHHHHHHHHHHhC-CCHHHHHHHHHHHH-------c-CCc-c----------CHHHHHHHH
Q 019340 136 STLAM-VDAGLMYWEMDKKEAAISLYRQAAVL-GDPAGQFNLGISYL-------Q-AQP-A----------NAEEAVKLL 194 (342)
Q Consensus 136 ~~~a~-~~lg~~~~~~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~~~-------~-g~~-~----------~~~~A~~~~ 194 (342)
.++.+ ..||.+++..+|++.|...|+.+... .+..++..+|.++. . +.. . -++.|...|
T Consensus 206 S~E~q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y 285 (414)
T PF12739_consen 206 SPEAQMRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTY 285 (414)
T ss_pred ChHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHH
Confidence 34444 47999999999999999999998754 45555555554432 1 211 1 244555556
Q ss_pred HHHHHc------CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC------C---CHHHHHHHHHHH--HcCCCCcc
Q 019340 195 YQASIA------GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG------G---YVRAMYNTSLCY--SFGEGLPL 257 (342)
Q Consensus 195 ~~a~~~------~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~------~---~~~a~~~lg~~y--~~g~g~~~ 257 (342)
.+...+ .-.++....+.++.. ...+.+|..++-+.... + .+..+-.++.+| .......+
T Consensus 286 ~~~~~~~~~~~~~a~R~~ll~~ell~~----~~~~~~a~~~~~~~~~~~l~~~l~~~~~alllE~~a~~~~~~~~~~~~~ 361 (414)
T PF12739_consen 286 LKSALPRCSLPYYALRCALLLAELLKS----RGGYWEAADQLIRWTSEILESDLRPFGSALLLEQAAYCYASLRSNRPSP 361 (414)
T ss_pred HhhhccccccccchHHHHHHHHHHHHh----cCccHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhhcccccCCCCc
Confidence 663221 123444445555543 33444544444433322 2 344455566666 33211101
Q ss_pred ---cHHHHHHHHHHHHHcCCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHc
Q 019340 258 ---SHRQARKWMKRAADCGHGKAQLEHGLGLFTEGEMMKAVVYLELATRA 304 (342)
Q Consensus 258 ---~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~ 304 (342)
...++.-|+- --|.-|...|....|..+|..|...
T Consensus 362 ~~~r~RK~af~~v------------LAg~~~~~~~~~~~a~rcy~~a~~v 399 (414)
T PF12739_consen 362 GLTRFRKYAFHMV------------LAGHRYSKAGQKKHALRCYKQALQV 399 (414)
T ss_pred cchhhHHHHHHHH------------HHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 1333333322 3345678889999999999998754
No 366
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=59.70 E-value=1.5e+02 Score=27.71 Aligned_cols=83 Identities=16% Similarity=0.049 Sum_probs=51.2
Q ss_pred CCHHHHHHHHHHHHcCC-ccCHHHHHHHHHHHHHcCC-HHHH-HHHHHHHhcCCCC--CCCHHHHHHHHHHHHHCCCHHH
Q 019340 167 GDPAGQFNLGISYLQAQ-PANAEEAVKLLYQASIAGH-VRAQ-YQLALCLHRGRGV--DFNLQEAARWYLRAAEGGYVRA 241 (342)
Q Consensus 167 ~~~~a~~~Lg~~~~~g~-~~~~~~A~~~~~~a~~~~~-~~a~-~~lg~~~~~g~~~--~~~~~~A~~~~~~A~~~~~~~a 241 (342)
.+.+.+|.+-.++.... -.|++-|+.|+-+.++.|. |... ..|-.+-.+..|. +.-..-|...+..+-..|.+++
T Consensus 244 k~gD~hYdliSA~hKSvRGSD~dAALyylARmi~~GeDp~yiARRlv~~AsEDIGlAdP~Al~~a~aa~da~~~lG~PE~ 323 (436)
T COG2256 244 KDGDAHYDLISALHKSVRGSDPDAALYYLARMIEAGEDPLYIARRLVRIASEDIGLADPNALQVAVAALDAVERLGSPEA 323 (436)
T ss_pred CCcchHHHHHHHHHHhhccCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCCChhHHHHHHHHHHHHHHhCCchH
Confidence 34467777777766432 3477788888888888764 5433 2333333332332 4455666666766667788888
Q ss_pred HHHHHHHH
Q 019340 242 MYNTSLCY 249 (342)
Q Consensus 242 ~~~lg~~y 249 (342)
...|+.+-
T Consensus 324 ~i~LAqav 331 (436)
T COG2256 324 RIALAQAV 331 (436)
T ss_pred HHHHHHHH
Confidence 88887764
No 367
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=59.05 E-value=1.2e+02 Score=26.13 Aligned_cols=47 Identities=15% Similarity=0.003 Sum_probs=30.0
Q ss_pred cHHHHHHHHHHHHHc-------CCHHH---HHHHHHHh-hhcCCHHHHHHHHHHHHHc
Q 019340 258 SHRQARKWMKRAADC-------GHGKA---QLEHGLGL-FTEGEMMKAVVYLELATRA 304 (342)
Q Consensus 258 ~~~~A~~~~~~a~~~-------~~~~a---~~~Lg~~~-~~~~~~~~A~~~~~~a~~~ 304 (342)
-.++|...|+.|.+. -+|.. ..|.+..| .-.|+.++|+...+.|.+.
T Consensus 141 ~~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~ 198 (236)
T PF00244_consen 141 AAEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDE 198 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 357888888888653 22322 23444444 4489999999999988753
No 368
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=58.93 E-value=24 Score=23.57 Aligned_cols=19 Identities=32% Similarity=0.338 Sum_probs=11.5
Q ss_pred HhcCCCHHHHHHHHHHHHh
Q 019340 147 YWEMDKKEAAISLYRQAAV 165 (342)
Q Consensus 147 ~~~~~~~~~A~~~~~~a~~ 165 (342)
+.+.|++++|+.+|.++++
T Consensus 15 ~D~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 15 ADEAGNYEEALELYKEAIE 33 (69)
T ss_dssp HHHTTSHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 3345666666666666654
No 369
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=58.85 E-value=64 Score=28.93 Aligned_cols=15 Identities=27% Similarity=0.260 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHCC
Q 019340 223 LQEAARWYLRAAEGG 237 (342)
Q Consensus 223 ~~~A~~~~~~A~~~~ 237 (342)
..+|+.+-.+|++.+
T Consensus 7 l~kaI~lv~kA~~eD 21 (439)
T KOG0739|consen 7 LQKAIDLVKKAIDED 21 (439)
T ss_pred HHHHHHHHHHHhhhc
Confidence 345555555555443
No 370
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.71 E-value=97 Score=30.53 Aligned_cols=29 Identities=24% Similarity=0.086 Sum_probs=13.4
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Q 019340 201 GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRA 233 (342)
Q Consensus 201 ~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A 233 (342)
++..-|-.||..... ..++..|.++|.+|
T Consensus 664 ~s~~Kw~~Lg~~al~----~~~l~lA~EC~~~a 692 (794)
T KOG0276|consen 664 NSEVKWRQLGDAALS----AGELPLASECFLRA 692 (794)
T ss_pred cchHHHHHHHHHHhh----cccchhHHHHHHhh
Confidence 344444444444443 33444555555444
No 371
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=58.68 E-value=1.3e+02 Score=32.48 Aligned_cols=94 Identities=19% Similarity=0.124 Sum_probs=60.0
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC-------CC---HHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc-----
Q 019340 136 STLAMVDAGLMYWEMDKKEAAISLYRQAAVL-------GD---PAGQFNLGISYLQAQPANAEEAVKLLYQASIA----- 200 (342)
Q Consensus 136 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-------~~---~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~----- 200 (342)
....+..|+.++...+|.++|+.+-++++-. ++ ..++.+|+...+ ..++...|+..+.++...
T Consensus 972 ~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f--~~~~~~~al~~~~ra~~l~~Ls~ 1049 (1236)
T KOG1839|consen 972 VASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEF--AVKNLSGALKSLNRALKLKLLSS 1049 (1236)
T ss_pred HHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHH--hccCccchhhhHHHHHHhhcccc
Confidence 3455678899999999999999998888621 33 345555665555 444666777777766542
Q ss_pred --CC---HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Q 019340 201 --GH---VRAQYQLALCLHRGRGVDFNLQEAARWYLRAAE 235 (342)
Q Consensus 201 --~~---~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~ 235 (342)
.+ .....+++.++.. ...++.|+++.+.|..
T Consensus 1050 ge~hP~~a~~~~nle~l~~~----v~e~d~al~~le~A~a 1085 (1236)
T KOG1839|consen 1050 GEDHPPTALSFINLELLLLG----VEEADTALRYLESALA 1085 (1236)
T ss_pred CCCCCchhhhhhHHHHHHhh----HHHHHHHHHHHHHHHH
Confidence 12 2234566666543 4467777777777665
No 372
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=58.08 E-value=67 Score=31.26 Aligned_cols=72 Identities=15% Similarity=0.098 Sum_probs=48.0
Q ss_pred HHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC-------CCHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 019340 92 NDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR-------GSTLAMVDAGLMYWEMDKKEAAISLYRQAA 164 (342)
Q Consensus 92 ~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~-------~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~ 164 (342)
+....-...++|+-.||.+-..-- ..+-..++++|.+|+.. .+..-+.-+|-.|.+.+++.+|+..+-.|+
T Consensus 268 yd~ghl~~YPmALg~LadLeEi~p--t~~r~~~~~l~~~AI~sa~~~Y~n~HvYPYty~gg~~yR~~~~~eA~~~Wa~aa 345 (618)
T PF05053_consen 268 YDMGHLARYPMALGNLADLEEIDP--TPGRPTPLELFNEAISSARTYYNNHHVYPYTYLGGYYYRHKRYREALRSWAEAA 345 (618)
T ss_dssp HHTTTTTT-HHHHHHHHHHHHHS----TTS--HHHHHHHHHHHHHHHCTT--SHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HhcCchhhCchhhhhhHhHHhhcc--CCCCCCHHHHHHHHHHHHHHHhcCCccccceehhhHHHHHHHHHHHHHHHHHHH
Confidence 444444557899999998877521 23355678999999874 244556667777888999999999998886
Q ss_pred h
Q 019340 165 V 165 (342)
Q Consensus 165 ~ 165 (342)
+
T Consensus 346 ~ 346 (618)
T PF05053_consen 346 D 346 (618)
T ss_dssp H
T ss_pred H
Confidence 4
No 373
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=57.98 E-value=25 Score=18.91 Aligned_cols=28 Identities=18% Similarity=0.116 Sum_probs=20.7
Q ss_pred HHHHHHHhhhcCCHHHHHHHHHHHHHcC
Q 019340 278 QLEHGLGLFTEGEMMKAVVYLELATRAG 305 (342)
Q Consensus 278 ~~~Lg~~~~~~~~~~~A~~~~~~a~~~~ 305 (342)
+..+-..|...|++++|...|....+.|
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~~g 30 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLERG 30 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 4455666788888888888888876554
No 374
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=57.94 E-value=18 Score=24.71 Aligned_cols=17 Identities=35% Similarity=0.513 Sum_probs=11.8
Q ss_pred cCCCHHHHHHHHHHHHh
Q 019340 149 EMDKKEAAISLYRQAAV 165 (342)
Q Consensus 149 ~~~~~~~A~~~~~~a~~ 165 (342)
+.|++++|+.+|.++++
T Consensus 20 ~~g~~~eAl~~Y~~a~e 36 (77)
T smart00745 20 EAGDYEEALELYKKAIE 36 (77)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 46777777777777664
No 375
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=56.36 E-value=1.4e+02 Score=32.23 Aligned_cols=151 Identities=17% Similarity=0.040 Sum_probs=97.5
Q ss_pred HHHHHhcCCCHHHHHH------HHHHHH---hCCCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHH-------cCC---H
Q 019340 143 AGLMYWEMDKKEAAIS------LYRQAA---VLGDPAGQFNLGISYLQAQPANAEEAVKLLYQASI-------AGH---V 203 (342)
Q Consensus 143 lg~~~~~~~~~~~A~~------~~~~a~---~~~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~-------~~~---~ 203 (342)
-|..-...+.+.+|.+ ++.+.. ....+..+..|+.++. ..++.++|+.+-.+++- .+. .
T Consensus 938 ~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~--~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~ 1015 (1236)
T KOG1839|consen 938 QGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSN--RLGDNQEAIAQQRKACIISERVLGKDSPNTK 1015 (1236)
T ss_pred hhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHh--hhcchHHHHHhcccceeeechhccCCCHHHH
Confidence 3333333445554544 444432 2245667788888888 89999999999998753 223 4
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC-----C-----CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc-
Q 019340 204 RAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG-----G-----YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC- 272 (342)
Q Consensus 204 ~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~-----~-----~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~- 272 (342)
..+.+++..... .++...|...+.++... + -+..-.+++.++ .+.+ +++.|+++++.|...
T Consensus 1016 ~~y~nlal~~f~----~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~-~~v~---e~d~al~~le~A~a~~ 1087 (1236)
T KOG1839|consen 1016 LAYGNLALYEFA----VKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLL-LGVE---EADTALRYLESALAKN 1087 (1236)
T ss_pred HHhhHHHHHHHh----ccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHH-hhHH---HHHHHHHHHHHHHHHH
Confidence 456666655544 34667777777777653 1 123446777776 4544 899999999999763
Q ss_pred ----C-----CHHHHHHHHHHhhhcCCHHHHHHHHHHHHH
Q 019340 273 ----G-----HGKAQLEHGLGLFTEGEMMKAVVYLELATR 303 (342)
Q Consensus 273 ----~-----~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~ 303 (342)
+ ....+..++.++...+++..|....+....
T Consensus 1088 ~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~ 1127 (1236)
T KOG1839|consen 1088 KKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYG 1127 (1236)
T ss_pred hhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHH
Confidence 2 133456677777778888887777776643
No 376
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.25 E-value=2.8e+02 Score=29.59 Aligned_cols=72 Identities=19% Similarity=0.148 Sum_probs=48.8
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCccCHHHHHHHHHHHH
Q 019340 119 KNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQFNLGISYLQAQPANAEEAVKLLYQAS 198 (342)
Q Consensus 119 ~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~ 198 (342)
++.+.|.++-++ .+.+..|..+|..-..++...+|++.|-+| +||..+...-.+-. ..+.+++-++|+..+-
T Consensus 1089 ~~ldRA~efAe~---~n~p~vWsqlakAQL~~~~v~dAieSyika---dDps~y~eVi~~a~--~~~~~edLv~yL~MaR 1160 (1666)
T KOG0985|consen 1089 GSLDRAYEFAER---CNEPAVWSQLAKAQLQGGLVKDAIESYIKA---DDPSNYLEVIDVAS--RTGKYEDLVKYLLMAR 1160 (1666)
T ss_pred hhHHHHHHHHHh---hCChHHHHHHHHHHHhcCchHHHHHHHHhc---CCcHHHHHHHHHHH--hcCcHHHHHHHHHHHH
Confidence 566667666554 466778888888888888888888877665 55555555555554 5667777777766553
No 377
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=55.06 E-value=33 Score=23.55 Aligned_cols=20 Identities=15% Similarity=-0.001 Sum_probs=12.2
Q ss_pred hhhcCCHHHHHHHHHHHHHc
Q 019340 285 LFTEGEMMKAVVYLELATRA 304 (342)
Q Consensus 285 ~~~~~~~~~A~~~~~~a~~~ 304 (342)
....|++++|+.+|..|++.
T Consensus 16 ~D~~g~y~eA~~lY~~ale~ 35 (75)
T cd02684 16 KDQRGDAAAALSLYCSALQY 35 (75)
T ss_pred HHHhccHHHHHHHHHHHHHH
Confidence 33456666666666666653
No 378
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=54.84 E-value=1.7e+02 Score=26.73 Aligned_cols=168 Identities=17% Similarity=0.050 Sum_probs=99.6
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHh----CCCH----HHHHHHHHHHHcCCccCHHHHHHHHHHHHH---cC--CHHHHH
Q 019340 141 VDAGLMYWEMDKKEAAISLYRQAAV----LGDP----AGQFNLGISYLQAQPANAEEAVKLLYQASI---AG--HVRAQY 207 (342)
Q Consensus 141 ~~lg~~~~~~~~~~~A~~~~~~a~~----~~~~----~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~---~~--~~~a~~ 207 (342)
..|..+|...++|.+|+......+. .+|. +.+..-..+|+ ...+..+|...+.-|-. .- .|..+.
T Consensus 132 arli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~--~l~Nl~KakasLTsART~AnaiYcpPqlQa 209 (411)
T KOG1463|consen 132 ARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYH--ALRNLPKAKASLTSARTTANAIYCPPQLQA 209 (411)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHH--HHhcchhHHHHHHHHHHhhcccccCHHHHH
Confidence 4677888888999999998877652 2332 33333444555 55566666666654422 11 344443
Q ss_pred HHHHHHhcCC--CCCCCHHHHHHHHHHHHHC----C-CHHHHHHHHHHHHcCC-CCcccHHHHHHHHHHHHHc--CCHHH
Q 019340 208 QLALCLHRGR--GVDFNLQEAARWYLRAAEG----G-YVRAMYNTSLCYSFGE-GLPLSHRQARKWMKRAADC--GHGKA 277 (342)
Q Consensus 208 ~lg~~~~~g~--~~~~~~~~A~~~~~~A~~~----~-~~~a~~~lg~~y~~g~-g~~~~~~~A~~~~~~a~~~--~~~~a 277 (342)
.|-.. .|. .-.+|+..|..||-.|.+. + +..|...|-.+..... --..+.-.++---+.++.. .+..+
T Consensus 210 ~lDLq--SGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~A 287 (411)
T KOG1463|consen 210 TLDLQ--SGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDA 287 (411)
T ss_pred HHHHh--ccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHH
Confidence 33211 121 1157999999999999875 2 3577766666554321 0012333333333444443 34678
Q ss_pred HHHHHHHhhh--cCCHHHHHHHHHHHHHcCcHHHHHH
Q 019340 278 QLEHGLGLFT--EGEMMKAVVYLELATRAGETAADHV 312 (342)
Q Consensus 278 ~~~Lg~~~~~--~~~~~~A~~~~~~a~~~~~~~a~~~ 312 (342)
+..++..+.+ ..+|++|+.-|+.=+..++.-..+.
T Consensus 288 mkavAeA~~nRSLkdF~~AL~~yk~eL~~D~ivr~Hl 324 (411)
T KOG1463|consen 288 MKAVAEAFGNRSLKDFEKALADYKKELAEDPIVRSHL 324 (411)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHhHHHHhcChHHHHHH
Confidence 8888887755 4589999999988887776554443
No 379
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.36 E-value=1.4e+02 Score=29.44 Aligned_cols=85 Identities=13% Similarity=0.111 Sum_probs=46.8
Q ss_pred CCCcHHHHHHHHhhCCChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCCCHHHHH
Q 019340 62 ASLPFDVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMV 141 (342)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~ 141 (342)
..+|.+...+++..+....+.+. .++.+ .++.-.+.|+.-+ ++++.|.++ |.+.++..-+-
T Consensus 610 p~I~k~~rt~va~Fle~~g~~e~------AL~~s---~D~d~rFelal~l-------grl~iA~~l---a~e~~s~~Kw~ 670 (794)
T KOG0276|consen 610 PTIPKEIRTKVAHFLESQGMKEQ------ALELS---TDPDQRFELALKL-------GRLDIAFDL---AVEANSEVKWR 670 (794)
T ss_pred ccCchhhhhhHHhHhhhccchHh------hhhcC---CChhhhhhhhhhc-------CcHHHHHHH---HHhhcchHHHH
Confidence 34455555666554444333322 22222 2344344444322 455555443 44455666677
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHh
Q 019340 142 DAGLMYWEMDKKEAAISLYRQAAV 165 (342)
Q Consensus 142 ~lg~~~~~~~~~~~A~~~~~~a~~ 165 (342)
.||......+++..|.+++.++-+
T Consensus 671 ~Lg~~al~~~~l~lA~EC~~~a~d 694 (794)
T KOG0276|consen 671 QLGDAALSAGELPLASECFLRARD 694 (794)
T ss_pred HHHHHHhhcccchhHHHHHHhhcc
Confidence 788888778888888888777754
No 380
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=53.84 E-value=26 Score=23.94 Aligned_cols=16 Identities=19% Similarity=0.250 Sum_probs=9.4
Q ss_pred cCCHHHHHHHHHHHHH
Q 019340 288 EGEMMKAVVYLELATR 303 (342)
Q Consensus 288 ~~~~~~A~~~~~~a~~ 303 (342)
.|++++|+.+|..|++
T Consensus 21 ~g~~~eAl~~Y~~a~e 36 (77)
T smart00745 21 AGDYEEALELYKKAIE 36 (77)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 5566666666666554
No 381
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=53.59 E-value=25 Score=24.24 Aligned_cols=25 Identities=16% Similarity=0.124 Sum_probs=18.1
Q ss_pred HHHHHhhhcCCHHHHHHHHHHHHHc
Q 019340 280 EHGLGLFTEGEMMKAVVYLELATRA 304 (342)
Q Consensus 280 ~Lg~~~~~~~~~~~A~~~~~~a~~~ 304 (342)
..+.-+...|++++|+.+|+.|++.
T Consensus 11 ~~AVe~D~~gr~~eAi~~Y~~aIe~ 35 (75)
T cd02682 11 INAVKAEKEGNAEDAITNYKKAIEV 35 (75)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 3344466788888888888888764
No 382
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=53.15 E-value=1.1e+02 Score=27.35 Aligned_cols=94 Identities=15% Similarity=0.095 Sum_probs=57.4
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC----C-CHH---HHHHHHHHHHcCCccCHHHHHHHHHHHHHcC-CHHHH
Q 019340 136 STLAMVDAGLMYWEMDKKEAAISLYRQAAVL----G-DPA---GQFNLGISYLQAQPANAEEAVKLLYQASIAG-HVRAQ 206 (342)
Q Consensus 136 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----~-~~~---a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~~-~~~a~ 206 (342)
..+++.++|..|.+.+|.+.+.+|..+.... | -.+ ....||.+|- +..-.++.++...-.++.| +-+-.
T Consensus 114 ~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~--d~~vV~e~lE~~~~~iEkGgDWeRr 191 (412)
T COG5187 114 GSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYG--DRKVVEESLEVADDIIEKGGDWERR 191 (412)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhc--cHHHHHHHHHHHHHHHHhCCCHHhh
Confidence 4678999999999999999999999887643 2 123 3445666665 5555555555555556553 32222
Q ss_pred H----HHHHHHhcCCCCCCCHHHHHHHHHHHHH
Q 019340 207 Y----QLALCLHRGRGVDFNLQEAARWYLRAAE 235 (342)
Q Consensus 207 ~----~lg~~~~~g~~~~~~~~~A~~~~~~A~~ 235 (342)
+ .-|..... ..|+.+|..++.-.+.
T Consensus 192 NRyK~Y~Gi~~m~----~RnFkeAa~Ll~d~l~ 220 (412)
T COG5187 192 NRYKVYKGIFKMM----RRNFKEAAILLSDILP 220 (412)
T ss_pred hhHHHHHHHHHHH----HHhhHHHHHHHHHHhc
Confidence 2 22333322 3467777766665543
No 383
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=52.93 E-value=53 Score=27.00 Aligned_cols=51 Identities=20% Similarity=0.136 Sum_probs=40.0
Q ss_pred cccHHHHHHHHHHHHHc-CCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCc
Q 019340 256 PLSHRQARKWMKRAADC-GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGE 306 (342)
Q Consensus 256 ~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~ 306 (342)
+......++|.++.+.. .++..+.+++.++...|+.++|..+.+++...-+
T Consensus 124 ~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 124 PEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 33455566666666654 5688888999999999999999999999988766
No 384
>PF13041 PPR_2: PPR repeat family
Probab=51.82 E-value=40 Score=20.53 Aligned_cols=28 Identities=18% Similarity=0.140 Sum_probs=14.7
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHhC
Q 019340 139 AMVDAGLMYWEMDKKEAAISLYRQAAVL 166 (342)
Q Consensus 139 a~~~lg~~~~~~~~~~~A~~~~~~a~~~ 166 (342)
++..+=..|.+.|++++|.++|++..+.
T Consensus 5 ~yn~li~~~~~~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 5 TYNTLISGYCKAGKFEEALKLFKEMKKR 32 (50)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 3344444555555555555555555544
No 385
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=51.28 E-value=2e+02 Score=26.51 Aligned_cols=30 Identities=13% Similarity=0.118 Sum_probs=26.8
Q ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 019340 135 GSTLAMVDAGLMYWEMDKKEAAISLYRQAA 164 (342)
Q Consensus 135 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~ 164 (342)
-+.+++..++.++...||.+.|..++++|+
T Consensus 38 yHidtLlqls~v~~~~gd~~~A~~lleRAL 67 (360)
T PF04910_consen 38 YHIDTLLQLSEVYRQQGDHAQANDLLERAL 67 (360)
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 377889999999999999999999999986
No 386
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=50.83 E-value=1.1e+02 Score=27.54 Aligned_cols=96 Identities=16% Similarity=0.172 Sum_probs=62.8
Q ss_pred cCCHHHHHHHHHHHHhCC--------CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC-CC--------HHHHHHHHHHHH
Q 019340 118 RKNLDKALDSFLKGAARG--------STLAMVDAGLMYWEMDKKEAAISLYRQAAVL-GD--------PAGQFNLGISYL 180 (342)
Q Consensus 118 ~~~~~~A~~~~~~A~~~~--------~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-~~--------~~a~~~Lg~~~~ 180 (342)
..+..+.+..|.-..-.. -......|+.+|...++++.|...+.-.-.. |. ...+..+|.+|.
T Consensus 76 ~~e~~Kei~~~~l~~iq~rvisfeEqv~~irl~LAsiYE~Eq~~~~aaq~L~~I~~~tg~~~~d~~~kl~l~iriarlyL 155 (399)
T KOG1497|consen 76 EDELRKEISHFTLEKIQPRVISFEEQVASIRLHLASIYEKEQNWRDAAQVLVGIPLDTGQKAYDVEQKLLLCIRIARLYL 155 (399)
T ss_pred CHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccCcccchhhhhhHHHHHHHHHHHHHHH
Confidence 344555555554432221 2345679999999999999998876543211 11 234567899999
Q ss_pred cCCccCHHHHHHHHHHHH----HcCCHHHHHHHHHHHhc
Q 019340 181 QAQPANAEEAVKLLYQAS----IAGHVRAQYQLALCLHR 215 (342)
Q Consensus 181 ~g~~~~~~~A~~~~~~a~----~~~~~~a~~~lg~~~~~ 215 (342)
+.+|..+|..+..++- +..+...+..+-.||..
T Consensus 156 --e~~d~veae~~inRaSil~a~~~Ne~Lqie~kvc~AR 192 (399)
T KOG1497|consen 156 --EDDDKVEAEAYINRASILQAESSNEQLQIEYKVCYAR 192 (399)
T ss_pred --hcCcHHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHH
Confidence 8889999999988853 33566666666666653
No 387
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=50.48 E-value=62 Score=31.46 Aligned_cols=64 Identities=13% Similarity=-0.015 Sum_probs=30.3
Q ss_pred CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc-------CCHHHHHHHHHHhhhcCCHHHHHHHHHHHHH
Q 019340 238 YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC-------GHGKAQLEHGLGLFTEGEMMKAVVYLELATR 303 (342)
Q Consensus 238 ~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~-------~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~ 303 (342)
++.|+-+||.+-..-. ..+-..++..|.+|+.. .|.-.+..+|-.|++.+++.+|+.++..|.+
T Consensus 276 YPmALg~LadLeEi~p--t~~r~~~~~l~~~AI~sa~~~Y~n~HvYPYty~gg~~yR~~~~~eA~~~Wa~aa~ 346 (618)
T PF05053_consen 276 YPMALGNLADLEEIDP--TPGRPTPLELFNEAISSARTYYNNHHVYPYTYLGGYYYRHKRYREALRSWAEAAD 346 (618)
T ss_dssp -HHHHHHHHHHHHHS----TTS--HHHHHHHHHHHHHHHCTT--SHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred CchhhhhhHhHHhhcc--CCCCCCHHHHHHHHHHHHHHHhcCCccccceehhhHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555543211 12334445555555441 2344455566666666666666666666643
No 388
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=50.45 E-value=2.3e+02 Score=27.02 Aligned_cols=46 Identities=9% Similarity=0.041 Sum_probs=24.8
Q ss_pred CCCHHHHHHHHHH--HHHCCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHH
Q 019340 220 DFNLQEAARWYLR--AAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAA 270 (342)
Q Consensus 220 ~~~~~~A~~~~~~--A~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~ 270 (342)
.+++.++.-+-.= .+.. .+.++..+|.+... .++|.+|..++...-
T Consensus 475 qgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e----~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 475 QGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLME----NKRYQEAWEYLQKLP 522 (549)
T ss_pred cccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHH----HhhHHHHHHHHHhCC
Confidence 3456665533221 1222 56666666666654 346777777766553
No 389
>PRK10941 hypothetical protein; Provisional
Probab=49.97 E-value=1.2e+02 Score=26.66 Aligned_cols=57 Identities=18% Similarity=0.036 Sum_probs=33.7
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHH
Q 019340 141 VDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASI 199 (342)
Q Consensus 141 ~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~ 199 (342)
.+|-.+|.+.++++.|+.+.+..+.. +++.-+.-.|.+|. ..+-+..|+.-++.-++
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~--qL~c~~~A~~DL~~fl~ 243 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYA--QLDCEHVALSDLSYFVE 243 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH--HcCCcHHHHHHHHHHHH
Confidence 34555556666666666666665433 55555666666666 55566666665555544
No 390
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=49.84 E-value=33 Score=23.61 Aligned_cols=19 Identities=26% Similarity=0.232 Sum_probs=10.9
Q ss_pred HhcCCCHHHHHHHHHHHHh
Q 019340 147 YWEMDKKEAAISLYRQAAV 165 (342)
Q Consensus 147 ~~~~~~~~~A~~~~~~a~~ 165 (342)
+...|++++|+.+|+.+++
T Consensus 16 ~D~~gr~~eAi~~Y~~aIe 34 (75)
T cd02682 16 AEKEGNAEDAITNYKKAIE 34 (75)
T ss_pred HHhcCCHHHHHHHHHHHHH
Confidence 3345666666666666553
No 391
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=49.45 E-value=26 Score=32.73 Aligned_cols=58 Identities=10% Similarity=0.124 Sum_probs=40.5
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHH----------hCCCHHHHHHHHHHHHcCCccCHHHHHHHHHHHH
Q 019340 139 AMVDAGLMYWEMDKKEAAISLYRQAA----------VLGDPAGQFNLGISYLQAQPANAEEAVKLLYQAS 198 (342)
Q Consensus 139 a~~~lg~~~~~~~~~~~A~~~~~~a~----------~~~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~ 198 (342)
+...|.+++.-.||+..|++.++..- -.-+...+|.+|.+|+ -.+++.+|++.|...+
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFayl--MlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYL--MLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 34556667777788888888766431 0123456778888888 7888888888888754
No 392
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=46.76 E-value=43 Score=23.31 Aligned_cols=51 Identities=18% Similarity=0.037 Sum_probs=29.4
Q ss_pred HHHHhhhcCCHHHHHHHHHHHHHcCc-HHHHHHHHHHHhhcChhcHHHHHHHHHhh
Q 019340 281 HGLGLFTEGEMMKAVVYLELATRAGE-TAADHVKNVILQQLSATSRDRAMLVVDSW 335 (342)
Q Consensus 281 Lg~~~~~~~~~~~A~~~~~~a~~~~~-~~a~~~~~~~~~~~~~~~~~~a~~~~~~~ 335 (342)
.|.-+...|+.++|+.+|+++++.=. ..+.-. . ....+.+++.|.++-+.+
T Consensus 14 kaL~~dE~g~~e~Al~~Y~~gi~~l~eg~ai~~-~---~~~~~~~w~~ar~~~~Km 65 (79)
T cd02679 14 KALRADEWGDKEQALAHYRKGLRELEEGIAVPV-P---SAGVGSQWERARRLQQKM 65 (79)
T ss_pred HHhhhhhcCCHHHHHHHHHHHHHHHHHHcCCCC-C---cccccHHHHHHHHHHHHH
Confidence 33445556899999999999875410 000000 0 235666777777665554
No 393
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=46.46 E-value=1.9e+02 Score=24.81 Aligned_cols=29 Identities=17% Similarity=0.078 Sum_probs=21.8
Q ss_pred HHHHHHHh---------hhcCCHHHHHHHHHHHHHcCc
Q 019340 278 QLEHGLGL---------FTEGEMMKAVVYLELATRAGE 306 (342)
Q Consensus 278 ~~~Lg~~~---------~~~~~~~~A~~~~~~a~~~~~ 306 (342)
+-.+|..+ ...++...|..++++|+.+++
T Consensus 172 ~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~ 209 (230)
T PHA02537 172 YKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLND 209 (230)
T ss_pred HHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCC
Confidence 34566655 355688999999999998864
No 394
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=45.45 E-value=1.5e+02 Score=23.48 Aligned_cols=68 Identities=13% Similarity=0.043 Sum_probs=50.0
Q ss_pred CCHHHHHHHHHH--HHhCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHH
Q 019340 119 KNLDKALDSFLK--GAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAE 188 (342)
Q Consensus 119 ~~~~~A~~~~~~--A~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~ 188 (342)
.+.+++...+.. .+..+.+..-.--|.++...|++.+|+..++...+. ..+-+...++.|+. ..+|+.
T Consensus 24 ~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~--al~Dp~ 95 (153)
T TIGR02561 24 ADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLN--AKGDAE 95 (153)
T ss_pred CCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHH--hcCChH
Confidence 456666555543 233467777888889999999999999999998876 34777778888887 666654
No 395
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=44.80 E-value=46 Score=22.96 Aligned_cols=20 Identities=25% Similarity=0.273 Sum_probs=13.7
Q ss_pred hhhcCCHHHHHHHHHHHHHc
Q 019340 285 LFTEGEMMKAVVYLELATRA 304 (342)
Q Consensus 285 ~~~~~~~~~A~~~~~~a~~~ 304 (342)
....|++++|+.+|..|++.
T Consensus 16 ~D~~g~y~eAl~~Y~~aie~ 35 (77)
T cd02683 16 LDQEGRFQEALVCYQEGIDL 35 (77)
T ss_pred HHHhccHHHHHHHHHHHHHH
Confidence 45567777777777777653
No 396
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=43.16 E-value=4.6e+02 Score=28.35 Aligned_cols=78 Identities=17% Similarity=0.189 Sum_probs=48.2
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC-CCHHHHHHHHHHHH-------cCC-ccCHHHHHHHHHHHHHc----CC
Q 019340 136 STLAMVDAGLMYWEMDKKEAAISLYRQAAVL-GDPAGQFNLGISYL-------QAQ-PANAEEAVKLLYQASIA----GH 202 (342)
Q Consensus 136 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~~~-------~g~-~~~~~~A~~~~~~a~~~----~~ 202 (342)
.+...+.+|.+|...|..-+|+.+|.+|... +..+++..+-.-.. .|. .....+|+.||.+++.. +.
T Consensus 919 k~v~rfmlg~~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~ 998 (1480)
T KOG4521|consen 919 KPVIRFMLGIAYLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNH 998 (1480)
T ss_pred HHHHHHhhheeeecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhcc
Confidence 4455677888888888888888888888765 55556655443321 122 22334567888877652 45
Q ss_pred HHHHHHHHHHH
Q 019340 203 VRAQYQLALCL 213 (342)
Q Consensus 203 ~~a~~~lg~~~ 213 (342)
++--..++..-
T Consensus 999 ~E~vcQlA~~A 1009 (1480)
T KOG4521|consen 999 AEEVCQLAVKA 1009 (1480)
T ss_pred HHHHHHHHHHH
Confidence 55555555443
No 397
>KOG1811 consensus Predicted Zn2+-binding protein, contains FYVE domain [General function prediction only]
Probab=43.07 E-value=3.5e+02 Score=26.90 Aligned_cols=75 Identities=16% Similarity=0.137 Sum_probs=58.8
Q ss_pred HHHHHHHhC------CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC---CCHHHHHHHHHHHHcCCccCHHHHHHHHHH
Q 019340 126 DSFLKGAAR------GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL---GDPAGQFNLGISYLQAQPANAEEAVKLLYQ 196 (342)
Q Consensus 126 ~~~~~A~~~------~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~ 196 (342)
+.|.-+++. +...+|..-|...++.+++..|..-|.++.++ +-|+..+.+-.....|-+.+......+|..
T Consensus 570 ErYqlaV~mckKc~iD~f~aW~AWGlA~Lk~e~~aaAR~KFkqafklkgedipdvi~diin~ieGgpp~dVq~Vrem~dh 649 (1141)
T KOG1811|consen 570 ERYQLAVEMCKKCGIDTFGAWHAWGLACLKAENLAAAREKFKQAFKLKGEDIPDVIFDIINLIEGGPPRDVQDVREMLDH 649 (1141)
T ss_pred HHHHHHHHHHhhcCCCcccHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCCccchHHHHHHHhhcCCCcchHHHHHHHHHH
Confidence 455555553 45578888999999999999999999999987 468888888777665656788888888887
Q ss_pred HHHc
Q 019340 197 ASIA 200 (342)
Q Consensus 197 a~~~ 200 (342)
.+++
T Consensus 650 lak~ 653 (1141)
T KOG1811|consen 650 LAKP 653 (1141)
T ss_pred hccC
Confidence 6654
No 398
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=42.88 E-value=3.1e+02 Score=26.26 Aligned_cols=82 Identities=11% Similarity=0.007 Sum_probs=42.2
Q ss_pred cHHHHHHHHHHHHHc-CCHHHH-HHHHHHhhhcCCHHHHHHHHHHHHHc-CcHHHHH-HHHHHHhhcChhcHHHHHHHHH
Q 019340 258 SHRQARKWMKRAADC-GHGKAQ-LEHGLGLFTEGEMMKAVVYLELATRA-GETAADH-VKNVILQQLSATSRDRAMLVVD 333 (342)
Q Consensus 258 ~~~~A~~~~~~a~~~-~~~~a~-~~Lg~~~~~~~~~~~A~~~~~~a~~~-~~~~a~~-~~~~~~~~~~~~~~~~a~~~~~ 333 (342)
|+.-|...|+..+.. ++..++ +..-..+...++-+.|...|+.+++. ....+.. +...+.-.-.-++...+..+-+
T Consensus 447 d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~ 526 (660)
T COG5107 447 DRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEE 526 (660)
T ss_pred CcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHH
Confidence 666777777776654 444444 22223345567777777777777654 2222222 2223332334455555555555
Q ss_pred hhhcCC
Q 019340 334 SWRAMP 339 (342)
Q Consensus 334 ~~~~~~ 339 (342)
++....
T Consensus 527 rf~e~~ 532 (660)
T COG5107 527 RFRELV 532 (660)
T ss_pred HHHHHc
Confidence 554443
No 399
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=41.95 E-value=3e+02 Score=26.55 Aligned_cols=126 Identities=9% Similarity=-0.049 Sum_probs=68.0
Q ss_pred cHHHHHHHHhhCCChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHh---CCCHHHHH
Q 019340 65 PFDVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAA---RGSTLAMV 141 (342)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~---~~~~~a~~ 141 (342)
..+....+......|+...|....+..++.-+. ++.-....+.+..+ .|+++.+...+.-+-. .++..-..
T Consensus 289 ~~~~~~si~k~~~~gd~~aas~~~~~~lr~~~~--~p~~i~l~~~i~~~----lg~ye~~~~~~s~~~~~~~s~~~~~~~ 362 (831)
T PRK15180 289 IREITLSITKQLADGDIIAASQQLFAALRNQQQ--DPVLIQLRSVIFSH----LGYYEQAYQDISDVEKIIGTTDSTLRC 362 (831)
T ss_pred hhHHHHHHHHHhhccCHHHHHHHHHHHHHhCCC--CchhhHHHHHHHHH----hhhHHHHHHHhhchhhhhcCCchHHHH
Confidence 345555666677889999998777777776555 44444445777777 4788887776654332 23333333
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHH
Q 019340 142 DAGLMYWEMDKKEAAISLYRQAAV--LGDPAGQFNLGISYLQAQPANAEEAVKLLYQASI 199 (342)
Q Consensus 142 ~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~ 199 (342)
.+- -....++.++|...-+-.+. ..+++...--+..-. ..+-+++++.+|++...
T Consensus 363 ~~r-~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~--~l~~~d~~~~~wk~~~~ 419 (831)
T PRK15180 363 RLR-SLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSAD--ALQLFDKSYHYWKRVLL 419 (831)
T ss_pred HHH-hhhchhhHHHHHHHHHHHhccccCChhheeeecccHH--HHhHHHHHHHHHHHHhc
Confidence 332 22345666666655444331 133332221111111 23445666666666543
No 400
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=40.73 E-value=60 Score=17.39 Aligned_cols=29 Identities=10% Similarity=-0.015 Sum_probs=20.2
Q ss_pred HHHHHHHHhhhcCCHHHHHHHHHHHHHcC
Q 019340 277 AQLEHGLGLFTEGEMMKAVVYLELATRAG 305 (342)
Q Consensus 277 a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~ 305 (342)
.+..+-..+...|+++.|...|..-.+.|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~g 31 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQG 31 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 34556667777888888888887765543
No 401
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=40.51 E-value=2.5e+02 Score=24.49 Aligned_cols=27 Identities=11% Similarity=0.015 Sum_probs=14.9
Q ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHH
Q 019340 135 GSTLAMVDAGLMYWEMDKKEAAISLYR 161 (342)
Q Consensus 135 ~~~~a~~~lg~~~~~~~~~~~A~~~~~ 161 (342)
|++..+..+|..|++.+++.+|..+|-
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl 114 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFL 114 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 566666666666666666666665543
No 402
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=40.00 E-value=3.5e+02 Score=25.97 Aligned_cols=52 Identities=15% Similarity=0.165 Sum_probs=31.9
Q ss_pred HHHHHcCCCCcCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 019340 108 GKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQA 163 (342)
Q Consensus 108 g~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a 163 (342)
+..|..| ..|-++|+...+++.+.. +...+.++.+|....|.+.-..+|.+.
T Consensus 308 ys~Y~~~---isd~q~al~tv~rg~~~s-psL~~~lse~yel~nd~e~v~~~fdk~ 359 (660)
T COG5107 308 YSEYLIG---ISDKQKALKTVERGIEMS-PSLTMFLSEYYELVNDEEAVYGCFDKC 359 (660)
T ss_pred HHHHHhh---ccHHHHHHHHHHhcccCC-CchheeHHHHHhhcccHHHHhhhHHHH
Confidence 4555555 356777777777766643 335566777776666665555555553
No 403
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=39.80 E-value=3.4e+02 Score=25.76 Aligned_cols=88 Identities=8% Similarity=0.092 Sum_probs=58.7
Q ss_pred HHHHHHhhCCChhHHhhHHHHHHHHHHhCc---CC--------C-----HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHH
Q 019340 68 VLNKIAASFTLPQLRAASLVCKSWNDALRP---LR--------E-----AMVLLRWGKRFKHGRGVRKNLDKALDSFLKG 131 (342)
Q Consensus 68 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~---~~--------~-----a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A 131 (342)
.+..+...|.++++..|...+...++...+ .+ + ....-.|..||.. .++++-|+.+-.+.
T Consensus 179 AL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~----~rkpdlALnh~hrs 254 (569)
T PF15015_consen 179 ALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLR----MRKPDLALNHSHRS 254 (569)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhh----cCCCchHHHHHhhh
Confidence 355666788888888887766666554322 11 1 1245668889988 58899999999999
Q ss_pred HhCCCHHHHH--HHHHHHhcCCCHHHHHHH
Q 019340 132 AARGSTLAMV--DAGLMYWEMDKKEAAISL 159 (342)
Q Consensus 132 ~~~~~~~a~~--~lg~~~~~~~~~~~A~~~ 159 (342)
+..+...-.. .-+.++....++.+|...
T Consensus 255 I~lnP~~frnHLrqAavfR~LeRy~eAarS 284 (569)
T PF15015_consen 255 INLNPSYFRNHLRQAAVFRRLERYSEAARS 284 (569)
T ss_pred hhcCcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 9887554444 445566666677776554
No 404
>PRK10941 hypothetical protein; Provisional
Probab=39.67 E-value=83 Score=27.69 Aligned_cols=62 Identities=8% Similarity=-0.150 Sum_probs=49.2
Q ss_pred HHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCc
Q 019340 241 AMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGE 306 (342)
Q Consensus 241 a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~ 306 (342)
-..+|-.+|.. .+++++|+.+.+..+.. +++.-.-.-|.+|.+.|.+..|..-++.-++..+
T Consensus 183 ml~nLK~~~~~----~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P 246 (269)
T PRK10941 183 LLDTLKAALME----EKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCP 246 (269)
T ss_pred HHHHHHHHHHH----cCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCC
Confidence 34566666755 44999999999998876 4555567789999999999999999999988754
No 405
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=38.77 E-value=71 Score=21.63 Aligned_cols=22 Identities=14% Similarity=0.030 Sum_probs=15.6
Q ss_pred HHhhhcCCHHHHHHHHHHHHHc
Q 019340 283 LGLFTEGEMMKAVVYLELATRA 304 (342)
Q Consensus 283 ~~~~~~~~~~~A~~~~~~a~~~ 304 (342)
.-....|++++|+.+|..|++.
T Consensus 14 v~~D~~g~~~~Al~~Y~~a~e~ 35 (75)
T cd02656 14 VKEDEDGNYEEALELYKEALDY 35 (75)
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 3344568888888888888764
No 406
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.94 E-value=2e+02 Score=29.95 Aligned_cols=43 Identities=23% Similarity=0.127 Sum_probs=26.2
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCccCHHHHHHHHHHH
Q 019340 150 MDKKEAAISLYRQAAVLGDPAGQFNLGISYLQAQPANAEEAVKLLYQA 197 (342)
Q Consensus 150 ~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a 197 (342)
.|+++.|+++ |-..++++.|..||..-+ ..|+.+.|..+|++.
T Consensus 656 ~gnle~ale~---akkldd~d~w~rLge~Al--~qgn~~IaEm~yQ~~ 698 (1202)
T KOG0292|consen 656 CGNLEVALEA---AKKLDDKDVWERLGEEAL--RQGNHQIAEMCYQRT 698 (1202)
T ss_pred cCCHHHHHHH---HHhcCcHHHHHHHHHHHH--HhcchHHHHHHHHHh
Confidence 4566665543 334466677777776666 566666666666654
No 407
>PRK14700 recombination factor protein RarA; Provisional
Probab=37.35 E-value=1.9e+02 Score=25.92 Aligned_cols=65 Identities=18% Similarity=0.063 Sum_probs=0.0
Q ss_pred hcCCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHHc-----CCccCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 019340 148 WEMDKKEAAISLYRQAAVLG-DPAGQFNLGISYLQ-----AQPANAEEAVKLLYQASIAGHVRAQYQLALC 212 (342)
Q Consensus 148 ~~~~~~~~A~~~~~~a~~~~-~~~a~~~Lg~~~~~-----g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~ 212 (342)
.++.|.+-|+.|+.+.++.| ||.....--.+... .++.-...|...++-+-..|.|++...|+.|
T Consensus 137 iRGSDpDAAlYyLArml~~GEDp~~IaRRLii~AsEDIGlAdP~al~~a~aa~~A~~~iG~PEa~i~La~a 207 (300)
T PRK14700 137 VRGTDPDAAIFWLSVMLDNGVDPLVIARRMLCIASEDIGNADPQALRVAMDAWNAYEKLGMPEGRLVLAQA 207 (300)
T ss_pred hhcCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCChHHHHHHHHH
No 408
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.20 E-value=2.8e+02 Score=28.95 Aligned_cols=81 Identities=22% Similarity=0.186 Sum_probs=59.2
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCccCHHHHHHHHHHHH
Q 019340 119 KNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQFNLGISYLQAQPANAEEAVKLLYQAS 198 (342)
Q Consensus 119 ~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~ 198 (342)
++.+.|++.-+ ..++++.|..||......|+.+-|...|++--. +-.|..+|+ ..|+.++-.+.-..+-
T Consensus 657 gnle~ale~ak---kldd~d~w~rLge~Al~qgn~~IaEm~yQ~~kn------fekLsfLYl--iTgn~eKL~Km~~iae 725 (1202)
T KOG0292|consen 657 GNLEVALEAAK---KLDDKDVWERLGEEALRQGNHQIAEMCYQRTKN------FEKLSFLYL--ITGNLEKLSKMMKIAE 725 (1202)
T ss_pred CCHHHHHHHHH---hcCcHHHHHHHHHHHHHhcchHHHHHHHHHhhh------hhheeEEEE--EeCCHHHHHHHHHHHH
Confidence 56666665443 478999999999999999999999999987543 334566677 7788888777666665
Q ss_pred HcCCHHHHHHHH
Q 019340 199 IAGHVRAQYQLA 210 (342)
Q Consensus 199 ~~~~~~a~~~lg 210 (342)
..++..+++.-+
T Consensus 726 ~r~D~~~~~qna 737 (1202)
T KOG0292|consen 726 IRNDATGQFQNA 737 (1202)
T ss_pred hhhhhHHHHHHH
Confidence 566666666554
No 409
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=36.86 E-value=3.7e+02 Score=25.35 Aligned_cols=120 Identities=11% Similarity=0.010 Sum_probs=75.2
Q ss_pred hCCChhHHhhHHHHHHHHHHhCcCC-------CHHHHHHHHHHHHcCCCCcCC---HHHHHHHHHHHHhCC-CHH----H
Q 019340 75 SFTLPQLRAASLVCKSWNDALRPLR-------EAMVLLRWGKRFKHGRGVRKN---LDKALDSFLKGAARG-STL----A 139 (342)
Q Consensus 75 ~~~~~~~~~a~~~~~~~~~~~~~~~-------~a~a~~~lg~~y~~g~g~~~~---~~~A~~~~~~A~~~~-~~~----a 139 (342)
++.+.++.++..............+ .+..+|-+...|.. .++ ...-+..+.+-+.++ +.+ .
T Consensus 136 l~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~----~~~l~~~rs~l~~~lrtAtLrhd~e~qavL 211 (493)
T KOG2581|consen 136 LIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYEL----EGRLADIRSFLHALLRTATLRHDEEGQAVL 211 (493)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHh----hcchHHHHHHHHHHHHHhhhcCcchhHHHH
Confidence 4466777777655544444333222 23456666677766 233 222333333444443 332 2
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhC------CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc
Q 019340 140 MVDAGLMYWEMDKKEAAISLYRQAAVL------GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA 200 (342)
Q Consensus 140 ~~~lg~~~~~~~~~~~A~~~~~~a~~~------~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~ 200 (342)
...|=+.|...+-++.|-++..++.-+ ..+.-+|.+|.+.. ...+|..|.++|..++..
T Consensus 212 iN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIka--iqldYssA~~~~~qa~rk 276 (493)
T KOG2581|consen 212 INLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKA--IQLDYSSALEYFLQALRK 276 (493)
T ss_pred HHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHH--hhcchhHHHHHHHHHHHh
Confidence 344556777779999999998887733 23556778888888 899999999999998764
No 410
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=36.47 E-value=1.2e+02 Score=24.94 Aligned_cols=46 Identities=15% Similarity=0.019 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHhC-CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC
Q 019340 121 LDKALDSFLKGAAR-GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL 166 (342)
Q Consensus 121 ~~~A~~~~~~A~~~-~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~ 166 (342)
.+..+++.++.+.. .++..+.+++.++...|+.++|..+.+++...
T Consensus 127 l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 127 LEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 44455555555553 47777778888888888888888877776654
No 411
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=35.93 E-value=3.5e+02 Score=24.91 Aligned_cols=139 Identities=14% Similarity=0.037 Sum_probs=88.5
Q ss_pred HHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC------------------C----------C---HHH
Q 019340 91 WNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR------------------G----------S---TLA 139 (342)
Q Consensus 91 ~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~------------------~----------~---~~a 139 (342)
.++..+- +..++.+++.++.+ .+|...|.++.++|+-. | | -.+
T Consensus 32 ll~~~Py--HidtLlqls~v~~~----~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~ffla 105 (360)
T PF04910_consen 32 LLQKNPY--HIDTLLQLSEVYRQ----QGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLA 105 (360)
T ss_pred HHHHCCC--cHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHH
Confidence 4455444 88999999999999 58999999999998521 0 0 024
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhC---CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHH--c-C----CHHHHHHH
Q 019340 140 MVDAGLMYWEMDKKEAAISLYRQAAVL---GDPAGQFNLGISYLQAQPANAEEAVKLLYQASI--A-G----HVRAQYQL 209 (342)
Q Consensus 140 ~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~--~-~----~~~a~~~l 209 (342)
.+.....+.+.|-+..|.++.+-.+.+ +||-+....-..|.- ..++++--+..++.... . . -|.-.+.+
T Consensus 106 l~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~AL-rs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~ 184 (360)
T PF04910_consen 106 LFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYAL-RSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSI 184 (360)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHH-hcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHH
Confidence 455555666779999999999987755 366555554444431 34566666666665433 1 1 23445556
Q ss_pred HHHHhcCCC-----------CCCCHHHHHHHHHHHHHC
Q 019340 210 ALCLHRGRG-----------VDFNLQEAARWYLRAAEG 236 (342)
Q Consensus 210 g~~~~~g~~-----------~~~~~~~A~~~~~~A~~~ 236 (342)
+.++..-.. ...+.++|...+.+|+..
T Consensus 185 aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~ 222 (360)
T PF04910_consen 185 ALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILR 222 (360)
T ss_pred HHHHHHhcCccccccccccccccchhHHHHHHHHHHHH
Confidence 666554111 133458888888888753
No 412
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=34.94 E-value=1.4e+02 Score=26.76 Aligned_cols=54 Identities=24% Similarity=0.206 Sum_probs=29.8
Q ss_pred HHHHHcCCccCHHHHHHHHHHHHHcCC--HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Q 019340 176 GISYLQAQPANAEEAVKLLYQASIAGH--VRAQYQLALCLHRGRGVDFNLQEAARWYLRAAE 235 (342)
Q Consensus 176 g~~~~~g~~~~~~~A~~~~~~a~~~~~--~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~ 235 (342)
+..|. ..+.+.+|+.+-++++..+. ...+..|=.++.. .+|--.++..|++-.+
T Consensus 286 a~~yl--e~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~----~gD~is~~khyerya~ 341 (361)
T COG3947 286 ARAYL--EAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLAT----LGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHH--HcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHH----hccchhhhhHHHHHHH
Confidence 34455 56677777777777776553 2333333333433 4455566666665543
No 413
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=33.85 E-value=94 Score=21.13 Aligned_cols=20 Identities=15% Similarity=0.019 Sum_probs=14.5
Q ss_pred hhhcCCHHHHHHHHHHHHHc
Q 019340 285 LFTEGEMMKAVVYLELATRA 304 (342)
Q Consensus 285 ~~~~~~~~~A~~~~~~a~~~ 304 (342)
....|++++|+.+|..|++.
T Consensus 16 ~D~~g~y~eA~~~Y~~aie~ 35 (75)
T cd02678 16 EDNAGNYEEALRLYQHALEY 35 (75)
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 45577888888888877764
No 414
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=32.31 E-value=1.7e+02 Score=21.53 Aligned_cols=38 Identities=24% Similarity=0.109 Sum_probs=24.2
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHhCCCHHHHHHHH
Q 019340 139 AMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQFNLG 176 (342)
Q Consensus 139 a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg 176 (342)
..+.-|.+-...||+++|.+...++.+..+......|.
T Consensus 61 ~al~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~ 98 (108)
T PF07219_consen 61 RALSRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLL 98 (108)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 33445666666788888888888877765544444443
No 415
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=32.15 E-value=70 Score=29.97 Aligned_cols=66 Identities=14% Similarity=0.047 Sum_probs=46.9
Q ss_pred CCHHHHHHHHHHHHcCC----CCcCCHHHHHHHHHHHHh------C----CCHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 019340 99 REAMVLLRWGKRFKHGR----GVRKNLDKALDSFLKGAA------R----GSTLAMVDAGLMYWEMDKKEAAISLYRQAA 164 (342)
Q Consensus 99 ~~a~a~~~lg~~y~~g~----g~~~~~~~A~~~~~~A~~------~----~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~ 164 (342)
+....+..||..-.-|+ -+.||+..|++..+-.-- . -+....+.+|.+|...+++.+|++.|...+
T Consensus 112 g~~~l~~~LGYFSligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 112 GSSPLYKMLGYFSLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred ccccHHHHhhHHHHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455666665554443 236899999987664311 0 145678999999999999999999998876
No 416
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=31.64 E-value=1.2e+02 Score=27.11 Aligned_cols=45 Identities=13% Similarity=0.151 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc----C----CHHHHHHHHHHHhc
Q 019340 169 PAGQFNLGISYLQAQPANAEEAVKLLYQASIA----G----HVRAQYQLALCLHR 215 (342)
Q Consensus 169 ~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~----~----~~~a~~~lg~~~~~ 215 (342)
.+++.++|..|- ...|.+.+.+|..+.... | ..-....||.+|..
T Consensus 115 ~ea~~n~aeyY~--qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d 167 (412)
T COG5187 115 SEADRNIAEYYC--QIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGD 167 (412)
T ss_pred HHHHHHHHHHHH--HHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhcc
Confidence 578888888888 777888888887776542 2 23344567777654
No 417
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.91 E-value=2.2e+02 Score=20.99 Aligned_cols=48 Identities=15% Similarity=0.034 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHc---CCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCcH
Q 019340 260 RQARKWMKRAADC---GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGET 307 (342)
Q Consensus 260 ~~A~~~~~~a~~~---~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~ 307 (342)
.+-.+.++++-.. -++.....||.+|.+.|+.+.|++-|+.-..+-+.
T Consensus 54 ~~le~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetEKalFPE 104 (121)
T COG4259 54 AALEKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETEKALFPE 104 (121)
T ss_pred HHHHHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHhhhhCcc
Confidence 3334555555433 23567789999999999999999999876555443
No 418
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=30.27 E-value=2.8e+02 Score=23.89 Aligned_cols=57 Identities=16% Similarity=0.079 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC----CC----HHHHHHHHHHHhcCCCHHHHHHHHHH
Q 019340 102 MVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR----GS----TLAMVDAGLMYWEMDKKEAAISLYRQ 162 (342)
Q Consensus 102 ~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~----~~----~~a~~~lg~~~~~~~~~~~A~~~~~~ 162 (342)
.....+|..|.. .+++++|+.+|+.++.. |. ...+..+-.|+...||.++.+...-+
T Consensus 179 ~l~~~~A~ey~~----~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~le 243 (247)
T PF11817_consen 179 YLSLEMAEEYFR----LGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLE 243 (247)
T ss_pred HHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 455678888888 58999999999999753 32 34456777788888888888776544
No 419
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=27.17 E-value=6.7e+02 Score=25.38 Aligned_cols=54 Identities=17% Similarity=0.173 Sum_probs=35.5
Q ss_pred HHHHHHcCCCCcCCHHHHHHHHHHH------HhCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 019340 107 WGKRFKHGRGVRKNLDKALDSFLKG------AARGSTLAMVDAGLMYWEMDKKEAAISLYRQAA 164 (342)
Q Consensus 107 lg~~y~~g~g~~~~~~~A~~~~~~A------~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~ 164 (342)
++..+.. .+.+.+|..+|.+. +++-..--++.++.-+...|+.++-..+.++-+
T Consensus 638 lA~~~Ay----~gKF~EAAklFk~~G~enRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA 697 (1081)
T KOG1538|consen 638 LADVFAY----QGKFHEAAKLFKRSGHENRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRA 697 (1081)
T ss_pred HHHHHHh----hhhHHHHHHHHHHcCchhhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHH
Confidence 4555444 47889999988874 332233345677777877787777777777644
No 420
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=26.83 E-value=4.2e+02 Score=24.70 Aligned_cols=130 Identities=14% Similarity=-0.020 Sum_probs=0.0
Q ss_pred HHHHHhhCCChhHHhhHHHHHHHHHHhC---cCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCCCHHHHHHHHH
Q 019340 69 LNKIAASFTLPQLRAASLVCKSWNDALR---PLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGL 145 (342)
Q Consensus 69 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~lg~ 145 (342)
...+..+|+..++..|..++..+.+... .......+..|..+|.. |-.- ++++|.+++++.........+..+-.
T Consensus 134 ~~~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~-WD~f-d~~~A~~~L~~~~~~~~~~~~~~~~~ 211 (380)
T TIGR02710 134 QGYARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLH-WDRF-EHEEALDYLNDPLPERLALYQVTSHD 211 (380)
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHH-HHcc-CHHHHHHHHhhccchhhhhhhhhhhh
Q ss_pred HHhcCCCHHHHHHHHHHH-----HhCCCHHHHHHHHHHHHc----CCccCHHHHHHHHHHHHHc
Q 019340 146 MYWEMDKKEAAISLYRQA-----AVLGDPAGQFNLGISYLQ----AQPANAEEAVKLLYQASIA 200 (342)
Q Consensus 146 ~~~~~~~~~~A~~~~~~a-----~~~~~~~a~~~Lg~~~~~----g~~~~~~~A~~~~~~a~~~ 200 (342)
-+...-.-...+.-..+. ...+.......|..++.. -..+.++.|+..+-++++.
T Consensus 212 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~na~rr~~~~ry~da~~r~yR~~e~ 275 (380)
T TIGR02710 212 ELEDVIKRNASILPEIIGSRNGRREAKRRPFLPLLGDLLANAERRATQGRYDDAAARLYRALEL 275 (380)
T ss_pred HHHHHHHhHHhhcchhhhccchhhhhcccchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
No 421
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=25.79 E-value=5.6e+02 Score=25.15 Aligned_cols=79 Identities=10% Similarity=0.061 Sum_probs=51.9
Q ss_pred CHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcC---CCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCccCHHHHHH
Q 019340 120 NLDKALDSFLKGAARG--STLAMVDAGLMYWEM---DKKEAAISLYRQAAVLG--DPAGQFNLGISYLQAQPANAEEAVK 192 (342)
Q Consensus 120 ~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~---~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~~~~g~~~~~~~A~~ 192 (342)
....|+..|.+++..- ....+.+.+.++... ||.-.|+.=...|+..+ .-.|++.|+.++. ..+.+.+|+.
T Consensus 389 ~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~--el~r~~eal~ 466 (758)
T KOG1310|consen 389 IVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALN--ELTRYLEALS 466 (758)
T ss_pred HHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHH--HHhhHHHhhh
Confidence 4556777888777642 223333444444443 56667777667777664 4578999999988 8888888888
Q ss_pred HHHHHHHc
Q 019340 193 LLYQASIA 200 (342)
Q Consensus 193 ~~~~a~~~ 200 (342)
+-..+...
T Consensus 467 ~~~alq~~ 474 (758)
T KOG1310|consen 467 CHWALQMS 474 (758)
T ss_pred hHHHHhhc
Confidence 77655443
No 422
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=25.71 E-value=2.4e+02 Score=19.71 Aligned_cols=46 Identities=9% Similarity=-0.077 Sum_probs=30.3
Q ss_pred ccHHHHHHHHHHHHHc--CCHHHH---HHHHHHhhhcCCHHHHHHHHHHHH
Q 019340 257 LSHRQARKWMKRAADC--GHGKAQ---LEHGLGLFTEGEMMKAVVYLELAT 302 (342)
Q Consensus 257 ~~~~~A~~~~~~a~~~--~~~~a~---~~Lg~~~~~~~~~~~A~~~~~~a~ 302 (342)
.+..+|+..++++++. +.+..+ -.|..+|.+.|++.+.++|--+=+
T Consensus 20 ~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~ 70 (80)
T PF10579_consen 20 NETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQL 70 (80)
T ss_pred chHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3788888888888875 333333 344556677888888777765433
No 423
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=25.46 E-value=2.5e+02 Score=20.63 Aligned_cols=37 Identities=22% Similarity=0.245 Sum_probs=26.1
Q ss_pred HHHHHHHHhhhcCCHHHHHHHHHHHHHcCcHHHHHHH
Q 019340 277 AQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVK 313 (342)
Q Consensus 277 a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~~ 313 (342)
....-|.+-...||+.+|.+...++.+..+.....++
T Consensus 61 ~al~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L 97 (108)
T PF07219_consen 61 RALSRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYL 97 (108)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHH
Confidence 3455666667788888888888888877655555444
No 424
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=24.45 E-value=3.6e+02 Score=25.38 Aligned_cols=91 Identities=18% Similarity=0.131 Sum_probs=50.3
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHhC-----CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHH----------HcCC
Q 019340 138 LAMVDAGLMYWEMDKKEAAISLYRQAAVL-----GDPAGQFNLGISYLQAQPANAEEAVKLLYQAS----------IAGH 202 (342)
Q Consensus 138 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-----~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~----------~~~~ 202 (342)
.++..+|..|...|+++.|++.|-++-+- .-...+.++-.+-. ..+++..-..+-.++. ..-.
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI--~~~nw~hv~sy~~~A~st~~~~~~~~q~v~ 228 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSI--YMGNWGHVLSYISKAESTPDANENLAQEVP 228 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHH--hhcchhhhhhHHHHHHhCchhhhhHHHhcC
Confidence 46788999999999999999999995432 12334444433333 2334333333333322 1222
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Q 019340 203 VRAQYQLALCLHRGRGVDFNLQEAARWYLRAA 234 (342)
Q Consensus 203 ~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~ 234 (342)
+.....-|...+. .+.++.|..+|-.+.
T Consensus 229 ~kl~C~agLa~L~----lkkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 229 AKLKCAAGLANLL----LKKYKSAAKYFLLAE 256 (466)
T ss_pred cchHHHHHHHHHH----HHHHHHHHHHHHhCC
Confidence 2333333333332 447788888777664
No 425
>PF12002 MgsA_C: MgsA AAA+ ATPase C terminal; InterPro: IPR021886 The MgsA protein possesses DNA-dependent ATPase and ssDNA annealing activities []. MgsA contributes to the recovery of stalled replication forks and therefore prevents genomic instability caused by aberrant DNA replication []. Additionally, MgsA may play a role in chromosomal segregation []. This is consistent with a report that MgsA co-localises with the replisome and affects chromosome segregation []. This domain represents the C-terminal region of MgsA. ; PDB: 2R9G_A 2QW6_D 3CTD_B 3PVS_B 3BGE_A.
Probab=24.01 E-value=2.8e+02 Score=22.50 Aligned_cols=19 Identities=26% Similarity=0.328 Sum_probs=8.8
Q ss_pred CHHHHHHHHHHHHhCC-CHH
Q 019340 152 KKEAAISLYRQAAVLG-DPA 170 (342)
Q Consensus 152 ~~~~A~~~~~~a~~~~-~~~ 170 (342)
|.+-|+.|+.+.++.| ++.
T Consensus 3 D~dAAlywlarml~~GeDp~ 22 (168)
T PF12002_consen 3 DPDAALYWLARMLEGGEDPR 22 (168)
T ss_dssp -HHHHHHHHHHHHHTT--HH
T ss_pred ChHHHHHHHHHHHHcCCcHH
Confidence 4455555555555554 444
No 426
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=23.97 E-value=6.5e+02 Score=24.19 Aligned_cols=45 Identities=16% Similarity=0.085 Sum_probs=36.3
Q ss_pred cHHHHHHHHHHHHHc-CCHHHHHHHHHHhhhcCCHHHHHHHHHHHH
Q 019340 258 SHRQARKWMKRAADC-GHGKAQLEHGLGLFTEGEMMKAVVYLELAT 302 (342)
Q Consensus 258 ~~~~A~~~~~~a~~~-~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~ 302 (342)
++.++.-+-.-..+. .++.++--+|.++....+|++|..++...-
T Consensus 477 ey~kc~~ys~WL~~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 477 EYHKCYLYSSWLTKIAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred cHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 777777655554444 378999999999999999999999998764
No 427
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=23.28 E-value=2.4e+02 Score=25.26 Aligned_cols=40 Identities=25% Similarity=0.263 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHhC-CCHHHHHHHHHHHhcCCCHHHHHHHH
Q 019340 121 LDKALDSFLKGAAR-GSTLAMVDAGLMYWEMDKKEAAISLY 160 (342)
Q Consensus 121 ~~~A~~~~~~A~~~-~~~~a~~~lg~~~~~~~~~~~A~~~~ 160 (342)
-.+|.++|--.++. |.+-.-..+...++...|..+|-.++
T Consensus 149 s~KA~ELFayLv~hkgk~v~~~~~ie~lwpe~D~kka~s~l 189 (361)
T COG3947 149 SRKALELFAYLVEHKGKEVTSWEAIEALWPEKDEKKASSLL 189 (361)
T ss_pred hhHHHHHHHHHHHhcCCcccHhHHHHHHccccchhhHHHHH
Confidence 45566666665553 33333344445555555555554443
No 428
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=22.95 E-value=1.3e+02 Score=15.57 Aligned_cols=12 Identities=33% Similarity=0.409 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHH
Q 019340 153 KEAAISLYRQAA 164 (342)
Q Consensus 153 ~~~A~~~~~~a~ 164 (342)
.+++...|++++
T Consensus 3 ~~~~r~i~e~~l 14 (33)
T smart00386 3 IERARKIYERAL 14 (33)
T ss_pred HHHHHHHHHHHH
Confidence 334444444444
No 429
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=22.90 E-value=2.7e+02 Score=21.22 Aligned_cols=30 Identities=23% Similarity=0.233 Sum_probs=18.2
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhC-CCHH
Q 019340 141 VDAGLMYWEMDKKEAAISLYRQAAVL-GDPA 170 (342)
Q Consensus 141 ~~lg~~~~~~~~~~~A~~~~~~a~~~-~~~~ 170 (342)
..+|..+...|++++|...|-+|+.. ++|.
T Consensus 67 V~lGE~L~~~G~~~~aa~hf~nAl~V~~qP~ 97 (121)
T PF02064_consen 67 VQLGEQLLAQGDYEEAAEHFYNALKVCPQPA 97 (121)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTSSSHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCCHH
Confidence 34666666677777777776666654 4443
No 430
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=22.84 E-value=8.5e+02 Score=25.07 Aligned_cols=170 Identities=16% Similarity=0.101 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCCCcCCHHHHHHHHHHHHhCCCH----HHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCHH----HHHHHH
Q 019340 105 LRWGKRFKHGRGVRKNLDKALDSFLKGAARGST----LAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPA----GQFNLG 176 (342)
Q Consensus 105 ~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~----~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~----a~~~Lg 176 (342)
..+|..+.. -+..++|-.+.++.+...++ ..++.++..|.-.|+..--..++.-|+...+.+ |-..||
T Consensus 505 l~vGiaL~~----ygrqe~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD~nDDVrRaAVialG 580 (929)
T KOG2062|consen 505 LAVGIALVV----YGRQEDADPLIKELLRDKDPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSDVNDDVRRAAVIALG 580 (929)
T ss_pred HHHhHHHHH----hhhhhhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCchhhHHHhhcccccccchHHHHHHHHHhe
Q ss_pred HHHHcCCccCHHHHHHHHHHHHHcCCHHHHH----HHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHH--HHHHHHHH
Q 019340 177 ISYLQAQPANAEEAVKLLYQASIAGHVRAQY----QLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVR--AMYNTSLC 248 (342)
Q Consensus 177 ~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~----~lg~~~~~g~~~~~~~~~A~~~~~~A~~~--~~~~--a~~~lg~~ 248 (342)
.++. .|++.-..+.+-..+.-++.+.| .||.++..-+ ..+|+..++..... ++.. |+..++.+
T Consensus 581 FVl~----~dp~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG-----~~eAi~lLepl~~D~~~fVRQgAlIa~amI 651 (929)
T KOG2062|consen 581 FVLF----RDPEQLPSTVSLLSESYNPHVRYGAAMALGIACAGTG-----LKEAINLLEPLTSDPVDFVRQGALIALAMI 651 (929)
T ss_pred eeEe----cChhhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCC-----cHHHHHHHhhhhcChHHHHHHHHHHHHHHH
Q ss_pred HHcC-CCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHhhh
Q 019340 249 YSFG-EGLPLSHRQARKWMKRAADCGHGKAQLEHGLGLFT 287 (342)
Q Consensus 249 y~~g-~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~ 287 (342)
..+. ....++...-++.|.+.+...+.+.+..+|.++.+
T Consensus 652 m~Q~t~~~~pkv~~frk~l~kvI~dKhEd~~aK~GAilAq 691 (929)
T KOG2062|consen 652 MIQQTEQLCPKVNGFRKQLEKVINDKHEDGMAKFGAILAQ 691 (929)
T ss_pred HHhcccccCchHHHHHHHHHHHhhhhhhHHHHHHHHHHHh
No 431
>PF08969 USP8_dimer: USP8 dimerisation domain; InterPro: IPR015063 This domain is predominantly found in the amino terminal region of Ubiquitin carboxyl-terminal hydrolase 8 (USP8). It has no known function. ; PDB: 2XZE_B 2A9U_A.
Probab=22.74 E-value=1.7e+02 Score=21.72 Aligned_cols=28 Identities=18% Similarity=0.032 Sum_probs=23.4
Q ss_pred HHHHHHHHhhhcCCHHHHHHHHHHHHHc
Q 019340 277 AQLEHGLGLFTEGEMMKAVVYLELATRA 304 (342)
Q Consensus 277 a~~~Lg~~~~~~~~~~~A~~~~~~a~~~ 304 (342)
.++.-|..|...||.+.|..+|.+.+.+
T Consensus 40 ~l~~~A~~~~~egd~E~AYvl~~R~~~L 67 (115)
T PF08969_consen 40 KLLREAEEYRQEGDEEQAYVLYMRYLTL 67 (115)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 4677888899999999999999998864
No 432
>PF14852 Fis1_TPR_N: Fis1 N-terminal tetratricopeptide repeat; PDB: 1IYG_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A 1PC2_A 1NZN_A.
Probab=22.08 E-value=1.3e+02 Score=17.13 Aligned_cols=27 Identities=4% Similarity=0.022 Sum_probs=11.4
Q ss_pred HHHHHHHHHHcCCCCcccHHHHHHHHHH
Q 019340 241 AMYNTSLCYSFGEGLPLSHRQARKWMKR 268 (342)
Q Consensus 241 a~~~lg~~y~~g~g~~~~~~~A~~~~~~ 268 (342)
+.+++++++.... ...|..+.+..++.
T Consensus 3 t~FnyAw~Lv~S~-~~~d~~~Gi~lLe~ 29 (35)
T PF14852_consen 3 TQFNYAWGLVKSN-NREDQQEGIALLEE 29 (35)
T ss_dssp HHHHHHHHHHHSS-SHHHHHHHHHHHHH
T ss_pred chhHHHHHHhcCC-CHHHHHHHHHHHHH
Confidence 3444444443322 23344444444443
No 433
>TIGR00823 EIIA-LAC phosphotransferase system enzyme II, lactose-specific, factor III. operon. While the Lac permeases consist of two polypeptide chains (IIA and IICB), the Chb permease of E. coli consists of three (IIA, IIB and IIC). In B. subtilis, a PTS permease similar to the Chb permease of E. coli is believed to transport lichenan (a b-1,3;1,4 glucan) degradation products, oligosaccharides of 2-4 glucose units. This model is specific for the IIA subunit of the Lac PTS family.
Probab=21.92 E-value=2.2e+02 Score=20.73 Aligned_cols=31 Identities=19% Similarity=0.060 Sum_probs=17.8
Q ss_pred CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 019340 134 RGSTLAMVDAGLMYWEMDKKEAAISLYRQAA 164 (342)
Q Consensus 134 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~ 164 (342)
.|++.+.+.=+.-..+.||+++|.+.++.|-
T Consensus 14 aG~Ars~~~eAl~~a~~gdfe~A~~~l~eA~ 44 (99)
T TIGR00823 14 AGDARSKALEALKAAKAGDFAKARALVEQAG 44 (99)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4555555555555556666666666655543
No 434
>TIGR00823 EIIA-LAC phosphotransferase system enzyme II, lactose-specific, factor III. operon. While the Lac permeases consist of two polypeptide chains (IIA and IICB), the Chb permease of E. coli consists of three (IIA, IIB and IIC). In B. subtilis, a PTS permease similar to the Chb permease of E. coli is believed to transport lichenan (a b-1,3;1,4 glucan) degradation products, oligosaccharides of 2-4 glucose units. This model is specific for the IIA subunit of the Lac PTS family.
Probab=21.88 E-value=2.5e+02 Score=20.50 Aligned_cols=38 Identities=21% Similarity=0.233 Sum_probs=25.6
Q ss_pred HHHHHHcCCHHHHHHHHHHhhhcCCHHHHHHHHHHHHH
Q 019340 266 MKRAADCGHGKAQLEHGLGLFTEGEMMKAVVYLELATR 303 (342)
Q Consensus 266 ~~~a~~~~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~ 303 (342)
|...+.-|++.+++.=+.-....||+++|...++.|-+
T Consensus 8 ~~iI~~aG~Ars~~~eAl~~a~~gdfe~A~~~l~eA~~ 45 (99)
T TIGR00823 8 FELIAYAGDARSKALEALKAAKAGDFAKARALVEQAGM 45 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444456676666666666778888888888777754
No 435
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=21.84 E-value=5.3e+02 Score=22.34 Aligned_cols=76 Identities=14% Similarity=0.023 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc-------CCHHH---HHHHHHHhhh-cCCHH
Q 019340 224 QEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC-------GHGKA---QLEHGLGLFT-EGEMM 292 (342)
Q Consensus 224 ~~A~~~~~~A~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~-------~~~~a---~~~Lg~~~~~-~~~~~ 292 (342)
.++.-+|.|.- .+-+.+++-+- .|.....-.++|...|+.|.+. -||-. ..|.+..|+. .++.+
T Consensus 114 ~eskVFy~KmK----GDYyRYlaE~~-~~~e~~~~~~~a~~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~ 188 (244)
T smart00101 114 AESKVFYLKMK----GDYHRYLAEFK-TGAERKEAAENTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPD 188 (244)
T ss_pred HHHHHHHHHHH----HHHHHHHHHHc-CcHHHHHHHHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 45566665542 44555555543 2221122467889999998763 12221 1344443333 79999
Q ss_pred HHHHHHHHHHHc
Q 019340 293 KAVVYLELATRA 304 (342)
Q Consensus 293 ~A~~~~~~a~~~ 304 (342)
+|+...+.|.+-
T Consensus 189 ~A~~lAk~afd~ 200 (244)
T smart00101 189 RACNLAKQAFDE 200 (244)
T ss_pred HHHHHHHHHHHH
Confidence 999888888653
No 436
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.63 E-value=2.4e+02 Score=20.79 Aligned_cols=25 Identities=24% Similarity=0.323 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHH
Q 019340 137 TLAMVDAGLMYWEMDKKEAAISLYR 161 (342)
Q Consensus 137 ~~a~~~lg~~~~~~~~~~~A~~~~~ 161 (342)
+-.+-+||.+|.+.|+.+.|+.-|+
T Consensus 72 PG~HAhLGlLys~~G~~e~a~~eFe 96 (121)
T COG4259 72 PGYHAHLGLLYSNSGKDEQAVREFE 96 (121)
T ss_pred CcHHHHHHHHHhhcCChHHHHHHHH
Confidence 3444555556655555555555554
No 437
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=20.82 E-value=6.8e+02 Score=23.22 Aligned_cols=59 Identities=14% Similarity=0.019 Sum_probs=36.6
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHhC--CCHH--HHHHHHHHHHcCCccCHHHHHHHHHHHHHc
Q 019340 142 DAGLMYWEMDKKEAAISLYRQAAVL--GDPA--GQFNLGISYLQAQPANAEEAVKLLYQASIA 200 (342)
Q Consensus 142 ~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~--a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~ 200 (342)
..+...+..+++..|...+...... +... .+..|..+|..=+.-++.+|.+++++....
T Consensus 136 ~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 136 RRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4555666778888888888887763 2222 344444444322566777887777776654
No 438
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=20.75 E-value=7.2e+02 Score=23.50 Aligned_cols=123 Identities=12% Similarity=0.077 Sum_probs=68.1
Q ss_pred HHHHHHh-cCCCHHHHHHHHHHHHhC---CC--------HHHHHHHHHHHHcCCccCHHH---HHHHHHHHHHcC-CHHH
Q 019340 142 DAGLMYW-EMDKKEAAISLYRQAAVL---GD--------PAGQFNLGISYLQAQPANAEE---AVKLLYQASIAG-HVRA 205 (342)
Q Consensus 142 ~lg~~~~-~~~~~~~A~~~~~~a~~~---~~--------~~a~~~Lg~~~~~g~~~~~~~---A~~~~~~a~~~~-~~~a 205 (342)
.|+.++. ..+++++|.+.-...+.. .+ ...++.+..+|. ..++... =+..+.+.+..+ +.+.
T Consensus 130 lLv~Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E--~~~~l~~~rs~l~~~lrtAtLrhd~e~ 207 (493)
T KOG2581|consen 130 LLVLLFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYE--LEGRLADIRSFLHALLRTATLRHDEEG 207 (493)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHH--hhcchHHHHHHHHHHHHHhhhcCcchh
Confidence 3444333 347788887776655422 22 345555666665 3344332 233333444444 4444
Q ss_pred HHHHH----HHHhcCCCCCCCHHHHHHHHHHHHHC----C--CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCC
Q 019340 206 QYQLA----LCLHRGRGVDFNLQEAARWYLRAAEG----G--YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGH 274 (342)
Q Consensus 206 ~~~lg----~~~~~g~~~~~~~~~A~~~~~~A~~~----~--~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~ 274 (342)
+..|- .+|.. .+-++.|...-.++.-. + .+.-.|.+|.+-.. .-+|..|.++|..|+...+
T Consensus 208 qavLiN~LLr~yL~----n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkai----qldYssA~~~~~qa~rkap 278 (493)
T KOG2581|consen 208 QAVLINLLLRNYLH----NKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAI----QLDYSSALEYFLQALRKAP 278 (493)
T ss_pred HHHHHHHHHHHHhh----hHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHh----hcchhHHHHHHHHHHHhCc
Confidence 44333 33433 44577777777776522 1 23445677777754 4499999999999987644
No 439
>KOG2709 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.49 E-value=2.1e+02 Score=26.84 Aligned_cols=24 Identities=21% Similarity=0.202 Sum_probs=12.2
Q ss_pred HHHHHHhhhcCCHHHHHHHHHHHH
Q 019340 279 LEHGLGLFTEGEMMKAVVYLELAT 302 (342)
Q Consensus 279 ~~Lg~~~~~~~~~~~A~~~~~~a~ 302 (342)
.++|..|...+++++|+.+|++++
T Consensus 26 V~~gl~~dE~~~~e~a~~~Ye~gl 49 (560)
T KOG2709|consen 26 VEQGLCYDEVNDWENALAMYEKGL 49 (560)
T ss_pred HHhhcchhhhcCHHHHHHHHHHHH
Confidence 344445555555555555555544
No 440
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=20.16 E-value=1.8e+02 Score=26.77 Aligned_cols=29 Identities=24% Similarity=0.370 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC
Q 019340 102 MVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR 134 (342)
Q Consensus 102 ~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~ 134 (342)
.-+...|..... .+|+++|..-|..|+.+
T Consensus 42 e~lv~~G~~~~~----~~d~~~Avda~s~A~~l 70 (400)
T KOG4563|consen 42 EELVQAGRRALC----NNDIDKAVDALSEATEL 70 (400)
T ss_pred HHHHHhhhHHHh----cccHHHHHHHHHHHHHH
Confidence 345666766665 57888888888888764
No 441
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=20.15 E-value=1.2e+03 Score=25.63 Aligned_cols=62 Identities=15% Similarity=0.158 Sum_probs=31.8
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHH-------HcCCCCcccHHHHHHHHHHHHH
Q 019340 205 AQYQLALCLHRGRGVDFNLQEAARWYLRAAEG-GYVRAMYNTSLCY-------SFGEGLPLSHRQARKWMKRAAD 271 (342)
Q Consensus 205 a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~-~~~~a~~~lg~~y-------~~g~g~~~~~~~A~~~~~~a~~ 271 (342)
--+.+|.+|.. .+...+|+++|.+|... +..++...+..-. ..|.. .-....|.+||.+++.
T Consensus 922 ~rfmlg~~yl~----tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t-~s~e~t~lhYYlkv~r 991 (1480)
T KOG4521|consen 922 IRFMLGIAYLG----TGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKT-PSEELTALHYYLKVVR 991 (1480)
T ss_pred HHHhhheeeec----CCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCC-CCchHHHHHHHHHHHH
Confidence 34455555554 55667777777777654 4444544443331 12321 1223335666666654
Done!