Query 019340
Match_columns 342
No_of_seqs 269 out of 2508
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 14:35:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019340.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019340hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3e4b_A ALGK; tetratricopeptide 100.0 3.7E-33 1.3E-37 263.2 26.6 255 81-339 157-422 (452)
2 2xm6_A Protein corresponding t 100.0 1.4E-31 4.8E-36 254.8 35.8 254 78-335 56-322 (490)
3 1ouv_A Conserved hypothetical 100.0 1E-31 3.5E-36 235.8 30.6 252 65-320 6-267 (273)
4 2xm6_A Protein corresponding t 100.0 4E-31 1.4E-35 251.6 35.7 256 78-337 92-359 (490)
5 3rjv_A Putative SEL1 repeat pr 100.0 2.2E-31 7.4E-36 225.8 23.0 196 122-317 3-210 (212)
6 1ouv_A Conserved hypothetical 100.0 4E-30 1.4E-34 225.6 30.9 240 97-340 2-253 (273)
7 3rjv_A Putative SEL1 repeat pr 100.0 1.9E-29 6.5E-34 213.8 23.9 190 90-284 7-209 (212)
8 3e4b_A ALGK; tetratricopeptide 100.0 9.4E-29 3.2E-33 233.1 23.1 235 98-336 138-385 (452)
9 1w3b_A UDP-N-acetylglucosamine 99.9 9.6E-22 3.3E-26 180.7 30.1 253 70-338 72-334 (388)
10 1w3b_A UDP-N-acetylglucosamine 99.9 9.2E-22 3.1E-26 180.8 29.5 258 68-341 104-371 (388)
11 1klx_A Cysteine rich protein B 99.9 1.9E-23 6.6E-28 164.5 15.2 134 112-247 2-137 (138)
12 3hym_B Cell division cycle pro 99.9 7.9E-22 2.7E-26 176.1 27.0 261 65-341 22-302 (330)
13 1klx_A Cysteine rich protein B 99.9 1.1E-22 3.7E-27 160.2 15.0 129 151-283 9-137 (138)
14 2pl2_A Hypothetical conserved 99.9 1.1E-21 3.7E-26 166.5 21.6 191 99-303 3-213 (217)
15 4eqf_A PEX5-related protein; a 99.9 4.2E-21 1.4E-25 174.8 21.9 249 67-333 67-351 (365)
16 3ieg_A DNAJ homolog subfamily 99.9 7.3E-20 2.5E-24 164.9 29.5 251 75-341 47-338 (359)
17 3hym_B Cell division cycle pro 99.9 3.9E-20 1.3E-24 165.1 24.0 231 71-317 62-314 (330)
18 2pl2_A Hypothetical conserved 99.9 2.1E-20 7.3E-25 158.4 20.7 192 135-336 3-212 (217)
19 3cv0_A Peroxisome targeting si 99.9 7E-20 2.4E-24 163.2 24.8 253 68-336 24-313 (327)
20 2y4t_A DNAJ homolog subfamily 99.9 2.2E-19 7.6E-24 167.6 28.9 254 72-341 33-361 (450)
21 2y4t_A DNAJ homolog subfamily 99.9 2.3E-19 7.8E-24 167.6 28.9 236 66-317 61-373 (450)
22 2h6f_A Protein farnesyltransfe 99.9 1.6E-20 5.3E-25 172.7 19.3 228 100-341 96-351 (382)
23 4eqf_A PEX5-related protein; a 99.9 1.2E-20 4.1E-25 171.7 18.5 227 100-340 64-312 (365)
24 3u4t_A TPR repeat-containing p 99.9 3.5E-20 1.2E-24 161.3 20.6 230 67-310 5-256 (272)
25 1fch_A Peroxisomal targeting s 99.9 7.7E-20 2.6E-24 166.1 23.3 248 67-333 66-354 (368)
26 2xpi_A Anaphase-promoting comp 99.8 3.3E-19 1.1E-23 172.5 26.9 260 66-341 306-582 (597)
27 3vtx_A MAMA; tetratricopeptide 99.8 6.9E-20 2.4E-24 150.5 18.8 169 136-314 4-180 (184)
28 3u4t_A TPR repeat-containing p 99.8 6.5E-20 2.2E-24 159.6 19.7 225 100-341 2-253 (272)
29 2gw1_A Mitochondrial precursor 99.8 2.5E-19 8.5E-24 169.7 24.7 259 67-340 8-369 (514)
30 1fch_A Peroxisomal targeting s 99.8 3.3E-20 1.1E-24 168.5 17.2 248 78-340 38-316 (368)
31 2h6f_A Protein farnesyltransfe 99.8 2.2E-19 7.6E-24 164.9 21.6 227 71-312 103-356 (382)
32 3uq3_A Heat shock protein STI1 99.8 1.4E-18 4.7E-23 149.4 24.3 215 68-305 8-237 (258)
33 3mkr_A Coatomer subunit epsilo 99.8 1.3E-19 4.4E-24 160.7 17.0 251 72-342 6-268 (291)
34 3uq3_A Heat shock protein STI1 99.8 7.3E-19 2.5E-23 151.1 21.0 219 100-339 4-237 (258)
35 3vtx_A MAMA; tetratricopeptide 99.8 5.5E-19 1.9E-23 145.0 19.2 171 100-284 4-182 (184)
36 3fp2_A TPR repeat-containing p 99.8 1E-18 3.6E-23 166.6 23.7 256 66-338 26-407 (537)
37 3ieg_A DNAJ homolog subfamily 99.8 2.1E-18 7.3E-23 155.2 24.2 253 67-341 5-304 (359)
38 2gw1_A Mitochondrial precursor 99.8 1E-18 3.6E-23 165.5 22.3 258 65-338 39-401 (514)
39 4a1s_A PINS, partner of inscut 99.8 1.7E-18 5.7E-23 159.9 22.3 257 68-338 51-372 (411)
40 3fp2_A TPR repeat-containing p 99.8 2.5E-18 8.5E-23 164.0 23.9 248 79-340 216-493 (537)
41 2q7f_A YRRB protein; TPR, prot 99.8 1.7E-18 5.8E-23 147.8 19.6 196 100-309 22-227 (243)
42 2xpi_A Anaphase-promoting comp 99.8 1.5E-17 5.3E-22 160.8 28.2 221 75-311 349-586 (597)
43 2ho1_A Type 4 fimbrial biogene 99.8 8E-18 2.7E-22 144.7 23.1 196 101-310 37-244 (252)
44 3sf4_A G-protein-signaling mod 99.8 4.5E-18 1.5E-22 156.1 22.3 258 66-337 10-335 (406)
45 3cv0_A Peroxisome targeting si 99.8 4.1E-18 1.4E-22 151.7 20.9 225 102-340 22-271 (327)
46 4abn_A Tetratricopeptide repea 99.8 2.6E-18 9E-23 162.6 20.2 191 100-300 101-317 (474)
47 3ro2_A PINS homolog, G-protein 99.8 1.2E-17 4.2E-22 148.5 23.0 259 68-340 8-334 (338)
48 4abn_A Tetratricopeptide repea 99.8 3.1E-18 1.1E-22 162.1 20.0 209 119-332 82-315 (474)
49 4gyw_A UDP-N-acetylglucosamine 99.8 2.5E-18 8.6E-23 169.8 19.6 162 136-307 8-177 (723)
50 2vq2_A PILW, putative fimbrial 99.8 5E-17 1.7E-21 136.6 24.7 196 100-309 7-216 (225)
51 1xnf_A Lipoprotein NLPI; TPR, 99.8 8E-18 2.7E-22 146.3 20.2 237 76-331 16-268 (275)
52 4i17_A Hypothetical protein; T 99.8 9.7E-17 3.3E-21 136.3 25.3 200 98-316 4-223 (228)
53 2vq2_A PILW, putative fimbrial 99.8 7E-17 2.4E-21 135.7 21.9 197 135-341 6-214 (225)
54 4gyw_A UDP-N-acetylglucosamine 99.8 9.8E-18 3.4E-22 165.6 18.8 160 99-272 7-174 (723)
55 2ho1_A Type 4 fimbrial biogene 99.8 4.3E-17 1.5E-21 140.1 20.6 195 137-341 37-241 (252)
56 4g1t_A Interferon-induced prot 99.8 7.8E-17 2.7E-21 151.5 23.5 212 99-316 49-290 (472)
57 3ulq_A Response regulator aspa 99.8 1.1E-16 3.7E-21 146.9 23.5 223 71-304 109-368 (383)
58 4g1t_A Interferon-induced prot 99.8 5.6E-17 1.9E-21 152.5 22.1 258 75-341 61-404 (472)
59 2q7f_A YRRB protein; TPR, prot 99.8 5.1E-17 1.8E-21 138.5 19.3 206 67-288 25-240 (243)
60 3mkr_A Coatomer subunit epsilo 99.8 8.9E-17 3.1E-21 142.3 20.9 218 72-311 41-271 (291)
61 3ulq_A Response regulator aspa 99.7 2.2E-16 7.6E-21 144.8 22.7 220 103-337 105-367 (383)
62 3nf1_A KLC 1, kinesin light ch 99.7 1.1E-16 3.9E-21 141.2 19.5 227 69-305 31-308 (311)
63 1xnf_A Lipoprotein NLPI; TPR, 99.7 2.2E-16 7.6E-21 137.1 20.7 213 118-341 18-247 (275)
64 4a1s_A PINS, partner of inscut 99.7 9.1E-17 3.1E-21 148.2 18.8 224 100-337 47-331 (411)
65 3q15_A PSP28, response regulat 99.7 3.2E-16 1.1E-20 143.6 21.1 220 74-304 110-365 (378)
66 3sf4_A G-protein-signaling mod 99.7 2E-16 7E-21 144.9 19.5 224 100-337 8-295 (406)
67 1qqe_A Vesicular transport pro 99.7 4E-16 1.4E-20 138.1 17.0 164 121-306 33-230 (292)
68 3ro2_A PINS homolog, G-protein 99.7 8.4E-16 2.9E-20 136.5 18.9 222 102-337 6-291 (338)
69 3urz_A Uncharacterized protein 99.7 3.1E-16 1E-20 131.8 14.3 162 138-307 5-189 (208)
70 2ond_A Cleavage stimulation fa 99.7 6.7E-15 2.3E-19 131.1 23.4 216 82-308 33-274 (308)
71 3q15_A PSP28, response regulat 99.7 5E-15 1.7E-19 135.7 22.7 220 102-336 102-363 (378)
72 3edt_B KLC 2, kinesin light ch 99.7 7.4E-16 2.5E-20 133.8 15.7 195 100-304 42-281 (283)
73 1qqe_A Vesicular transport pro 99.7 4.7E-15 1.6E-19 131.2 21.1 191 108-312 44-277 (292)
74 3qky_A Outer membrane assembly 99.7 1.7E-15 5.9E-20 131.3 17.8 180 98-306 12-226 (261)
75 2ond_A Cleavage stimulation fa 99.7 3.9E-14 1.3E-18 126.1 26.6 208 123-341 34-273 (308)
76 3urz_A Uncharacterized protein 99.7 2.9E-15 1E-19 125.7 16.7 172 100-283 3-198 (208)
77 4i17_A Hypothetical protein; T 99.7 1.1E-14 3.7E-19 123.5 20.4 191 134-341 4-212 (228)
78 3nf1_A KLC 1, kinesin light ch 99.6 8.2E-15 2.8E-19 129.2 18.8 227 100-340 26-309 (311)
79 3as5_A MAMA; tetratricopeptide 99.6 1.4E-14 4.8E-19 117.5 18.1 157 139-305 10-174 (186)
80 2pzi_A Probable serine/threoni 99.6 3.4E-15 1.2E-19 147.4 17.2 164 118-292 404-585 (681)
81 2pzi_A Probable serine/threoni 99.6 1.4E-15 4.7E-20 150.2 14.1 139 100-249 432-578 (681)
82 3qky_A Outer membrane assembly 99.6 1E-14 3.5E-19 126.4 16.8 188 133-341 11-227 (261)
83 4ga2_A E3 SUMO-protein ligase 99.6 2.1E-15 7.1E-20 119.9 10.6 133 107-249 3-144 (150)
84 4ga2_A E3 SUMO-protein ligase 99.6 2.1E-15 7.1E-20 120.0 9.5 139 142-290 2-149 (150)
85 3as5_A MAMA; tetratricopeptide 99.6 1.1E-13 3.7E-18 112.2 18.8 158 101-272 8-173 (186)
86 2ifu_A Gamma-SNAP; membrane fu 99.6 1.9E-13 6.4E-18 121.7 20.7 191 77-306 3-225 (307)
87 1hz4_A MALT regulatory protein 99.6 1.5E-12 5.2E-17 118.5 26.2 248 72-336 21-320 (373)
88 3edt_B KLC 2, kinesin light ch 99.6 3.3E-14 1.1E-18 123.3 14.3 211 118-338 14-281 (283)
89 2yhc_A BAMD, UPF0169 lipoprote 99.5 3.3E-13 1.1E-17 114.5 18.2 177 100-306 3-215 (225)
90 2ifu_A Gamma-SNAP; membrane fu 99.5 5.4E-14 1.8E-18 125.2 13.7 192 119-341 5-226 (307)
91 4gco_A Protein STI-1; structur 99.5 2E-13 7E-18 105.0 14.4 108 100-213 12-125 (126)
92 1hz4_A MALT regulatory protein 99.5 4.3E-12 1.5E-16 115.5 23.3 221 102-336 15-280 (373)
93 1xi4_A Clathrin heavy chain; a 99.5 1.5E-11 5E-16 125.5 28.9 211 99-336 1103-1343(1630)
94 2vsy_A XCC0866; transferase, g 99.5 3.6E-13 1.2E-17 130.0 15.9 147 119-272 3-157 (568)
95 4gco_A Protein STI-1; structur 99.5 6.7E-13 2.3E-17 102.1 14.2 108 136-249 12-125 (126)
96 2vsy_A XCC0866; transferase, g 99.5 1.3E-12 4.5E-17 126.1 17.6 180 78-271 2-189 (568)
97 2r5s_A Uncharacterized protein 99.5 2.8E-13 9.6E-18 110.3 11.0 156 139-303 8-172 (176)
98 3qou_A Protein YBBN; thioredox 99.5 7.7E-13 2.6E-17 116.6 14.6 172 121-303 102-283 (287)
99 2ooe_A Cleavage stimulation fa 99.5 3.5E-12 1.2E-16 122.0 20.0 208 122-340 255-494 (530)
100 2yhc_A BAMD, UPF0169 lipoprote 99.4 2.8E-12 9.5E-17 108.7 16.4 181 136-342 3-217 (225)
101 2qfc_A PLCR protein; TPR, HTH, 99.4 1.7E-11 5.7E-16 108.2 20.9 154 141-304 79-266 (293)
102 1xi4_A Clathrin heavy chain; a 99.4 4.7E-11 1.6E-15 121.9 25.2 199 118-342 1089-1313(1630)
103 3qou_A Protein YBBN; thioredox 99.4 2.7E-12 9.1E-17 113.2 14.5 159 99-271 115-283 (287)
104 2r5s_A Uncharacterized protein 99.4 1.8E-12 6.2E-17 105.5 12.4 157 102-271 7-172 (176)
105 3gyz_A Chaperone protein IPGC; 99.4 1.5E-12 5E-17 103.5 11.2 95 136-236 35-133 (151)
106 4f3v_A ESX-1 secretion system 99.4 2.7E-13 9.3E-18 117.9 7.5 189 103-307 9-240 (282)
107 3dra_A Protein farnesyltransfe 99.4 5.7E-11 2E-15 105.2 22.3 236 67-311 34-295 (306)
108 1hh8_A P67PHOX, NCF-2, neutrop 99.4 6E-12 2E-16 105.0 15.3 127 100-237 5-151 (213)
109 2ooe_A Cleavage stimulation fa 99.4 1.1E-10 3.9E-15 111.5 26.2 215 83-309 256-497 (530)
110 1hh8_A P67PHOX, NCF-2, neutrop 99.4 9E-12 3.1E-16 103.9 16.2 144 138-306 7-152 (213)
111 3u3w_A Transcriptional activat 99.4 3.5E-11 1.2E-15 106.0 20.5 152 143-304 81-266 (293)
112 3gyz_A Chaperone protein IPGC; 99.4 8.3E-12 2.8E-16 99.1 14.0 96 100-201 35-134 (151)
113 3u3w_A Transcriptional activat 99.4 1.9E-11 6.3E-16 107.8 17.2 145 118-271 88-265 (293)
114 2fo7_A Synthetic consensus TPR 99.4 3.2E-11 1.1E-15 91.9 16.4 123 103-235 3-131 (136)
115 1p5q_A FKBP52, FK506-binding p 99.4 7.5E-14 2.6E-18 126.0 0.3 143 151-303 127-293 (336)
116 2qfc_A PLCR protein; TPR, HTH, 99.4 2.4E-11 8.2E-16 107.1 16.4 158 101-272 75-266 (293)
117 2fo7_A Synthetic consensus TPR 99.3 7.6E-11 2.6E-15 89.7 17.2 128 139-306 3-134 (136)
118 2c2l_A CHIP, carboxy terminus 99.3 7.5E-12 2.6E-16 109.9 11.8 95 100-200 3-101 (281)
119 1b89_A Protein (clathrin heavy 99.3 1.1E-12 3.8E-17 120.5 6.4 205 100-333 60-267 (449)
120 2c2l_A CHIP, carboxy terminus 99.3 1.3E-11 4.3E-16 108.5 12.4 187 136-337 3-198 (281)
121 4gcn_A Protein STI-1; structur 99.3 2.7E-11 9.2E-16 93.1 12.5 101 101-207 8-120 (127)
122 2vgx_A Chaperone SYCD; alterna 99.3 1E-11 3.4E-16 98.3 10.3 104 127-236 9-118 (148)
123 3gw4_A Uncharacterized protein 99.3 9.4E-11 3.2E-15 96.6 16.2 148 119-304 6-176 (203)
124 4gcn_A Protein STI-1; structur 99.3 4.5E-11 1.5E-15 91.8 13.0 94 137-236 8-112 (127)
125 1a17_A Serine/threonine protei 99.3 1.1E-10 3.6E-15 92.9 15.4 124 101-234 13-144 (166)
126 1b89_A Protein (clathrin heavy 99.3 1.1E-11 3.7E-16 113.9 10.7 225 77-342 15-240 (449)
127 3gw4_A Uncharacterized protein 99.3 7.5E-11 2.6E-15 97.2 13.9 148 76-235 3-175 (203)
128 3upv_A Heat shock protein STI1 99.3 8.8E-11 3E-15 89.6 13.3 108 100-213 3-122 (126)
129 1a17_A Serine/threonine protei 99.3 3.4E-10 1.2E-14 90.0 16.7 94 137-236 13-110 (166)
130 1p5q_A FKBP52, FK506-binding p 99.3 9.7E-11 3.3E-15 105.5 15.1 110 100-215 146-276 (336)
131 3sz7_A HSC70 cochaperone (SGT) 99.3 8.9E-11 3E-15 94.0 13.2 108 100-213 10-123 (164)
132 3upv_A Heat shock protein STI1 99.2 1.6E-10 5.5E-15 88.1 13.4 95 137-237 4-102 (126)
133 2lni_A Stress-induced-phosphop 99.2 1.8E-10 6.1E-15 87.9 13.7 110 100-215 15-130 (133)
134 2xcb_A PCRH, regulatory protei 99.2 6.4E-11 2.2E-15 92.6 11.2 94 136-235 17-114 (142)
135 3sz7_A HSC70 cochaperone (SGT) 99.2 1.3E-10 4.5E-15 93.0 13.2 108 136-249 10-123 (164)
136 2vgx_A Chaperone SYCD; alterna 99.2 2.8E-11 9.7E-16 95.6 8.8 95 100-200 20-118 (148)
137 4f3v_A ESX-1 secretion system 99.2 1.3E-10 4.3E-15 101.1 13.1 188 139-340 9-239 (282)
138 3dra_A Protein farnesyltransfe 99.2 3.1E-09 1.1E-13 94.1 21.6 217 119-341 47-291 (306)
139 2lni_A Stress-induced-phosphop 99.2 3E-10 1E-14 86.6 13.2 109 136-250 15-129 (133)
140 2e2e_A Formate-dependent nitri 99.2 1.3E-10 4.5E-15 94.1 11.5 112 119-236 24-144 (177)
141 2xcb_A PCRH, regulatory protei 99.2 2.1E-10 7.3E-15 89.6 12.3 101 100-206 17-123 (142)
142 2fbn_A 70 kDa peptidylprolyl i 99.2 3.2E-11 1.1E-15 99.8 7.2 126 118-249 17-166 (198)
143 3ro3_A PINS homolog, G-protein 99.2 5.3E-10 1.8E-14 87.9 13.6 125 101-235 9-157 (164)
144 2vyi_A SGTA protein; chaperone 99.2 1.1E-09 3.8E-14 82.8 15.0 110 100-215 11-126 (131)
145 1elw_A TPR1-domain of HOP; HOP 99.2 7.8E-10 2.7E-14 82.2 13.5 107 101-213 4-116 (118)
146 1elw_A TPR1-domain of HOP; HOP 99.2 1.6E-09 5.6E-14 80.4 15.1 108 136-249 3-116 (118)
147 2dba_A Smooth muscle cell asso 99.2 2.1E-09 7.3E-14 83.5 16.4 111 99-215 26-145 (148)
148 1na0_A Designed protein CTPR3; 99.1 1.7E-09 5.7E-14 81.1 15.0 108 101-214 9-122 (125)
149 2e2e_A Formate-dependent nitri 99.1 5.9E-10 2E-14 90.2 12.9 119 75-201 20-145 (177)
150 3dss_A Geranylgeranyl transfer 99.1 2.1E-08 7E-13 89.4 23.8 235 78-317 42-317 (331)
151 4b4t_Q 26S proteasome regulato 99.1 2.8E-09 9.4E-14 98.6 18.9 155 139-303 57-244 (434)
152 2vyi_A SGTA protein; chaperone 99.1 1.9E-09 6.5E-14 81.6 14.8 109 136-250 11-125 (131)
153 2fbn_A 70 kDa peptidylprolyl i 99.1 6.1E-10 2.1E-14 92.0 12.8 110 100-215 37-168 (198)
154 4b4t_Q 26S proteasome regulato 99.1 1.7E-09 5.7E-14 100.1 16.2 193 65-271 4-244 (434)
155 1na0_A Designed protein CTPR3; 99.1 2.9E-09 1E-13 79.7 14.8 108 137-250 9-122 (125)
156 1hxi_A PEX5, peroxisome target 99.1 4.7E-10 1.6E-14 85.3 10.3 90 104-199 20-113 (121)
157 3rkv_A Putative peptidylprolyl 99.1 9.8E-10 3.3E-14 87.7 12.3 109 100-214 10-143 (162)
158 2dba_A Smooth muscle cell asso 99.1 3.9E-09 1.3E-13 82.0 15.5 110 135-250 26-144 (148)
159 3q49_B STIP1 homology and U bo 99.1 1.7E-09 5.7E-14 83.3 13.1 94 100-199 8-105 (137)
160 1hxi_A PEX5, peroxisome target 99.1 6.5E-10 2.2E-14 84.5 10.6 93 139-237 19-115 (121)
161 3ro3_A PINS homolog, G-protein 99.1 1.9E-09 6.4E-14 84.7 13.5 130 137-304 9-158 (164)
162 1elr_A TPR2A-domain of HOP; HO 99.1 2.1E-09 7.3E-14 81.3 13.4 108 101-214 4-123 (131)
163 3q49_B STIP1 homology and U bo 99.1 2.1E-09 7.1E-14 82.7 13.3 96 135-236 7-106 (137)
164 3dss_A Geranylgeranyl transfer 99.1 3.9E-08 1.4E-12 87.6 22.2 218 120-341 45-307 (331)
165 1elr_A TPR2A-domain of HOP; HO 99.1 3.9E-09 1.3E-13 79.9 13.5 107 137-249 4-122 (131)
166 3rkv_A Putative peptidylprolyl 99.1 2.7E-09 9.3E-14 85.1 13.0 95 136-236 10-126 (162)
167 2hr2_A Hypothetical protein; a 99.1 1.7E-09 6E-14 85.5 11.6 92 138-235 12-130 (159)
168 2xev_A YBGF; tetratricopeptide 99.0 2.9E-09 9.9E-14 81.0 12.3 92 103-200 4-105 (129)
169 2kck_A TPR repeat; tetratricop 99.0 1.4E-09 4.8E-14 80.0 10.1 95 100-200 5-106 (112)
170 1kt0_A FKBP51, 51 kDa FK506-bi 99.0 2E-09 6.7E-14 101.1 13.4 109 136-250 267-396 (457)
171 2hr2_A Hypothetical protein; a 99.0 2.2E-09 7.6E-14 84.8 11.6 95 100-200 10-131 (159)
172 2xev_A YBGF; tetratricopeptide 99.0 3.9E-09 1.3E-13 80.3 12.3 93 138-236 3-105 (129)
173 1kt0_A FKBP51, 51 kDa FK506-bi 99.0 4.9E-09 1.7E-13 98.4 15.4 119 167-295 266-405 (457)
174 2if4_A ATFKBP42; FKBP-like, al 99.0 1.2E-09 4.2E-14 98.4 10.6 149 137-308 179-332 (338)
175 1ihg_A Cyclophilin 40; ppiase 99.0 3.7E-09 1.3E-13 96.4 13.7 109 101-215 223-353 (370)
176 2kck_A TPR repeat; tetratricop 99.0 2.5E-09 8.5E-14 78.7 10.2 95 136-236 5-106 (112)
177 2if4_A ATFKBP42; FKBP-like, al 99.0 1.6E-09 5.6E-14 97.6 10.4 147 100-272 178-328 (338)
178 3q7a_A Farnesyltransferase alp 99.0 7.5E-08 2.6E-12 86.3 20.1 224 80-310 69-338 (349)
179 1wao_1 Serine/threonine protei 99.0 3.3E-10 1.1E-14 107.0 4.7 120 102-231 7-134 (477)
180 3k9i_A BH0479 protein; putativ 99.0 2.2E-09 7.6E-14 80.7 8.4 88 118-207 3-99 (117)
181 3mv2_B Coatomer subunit epsilo 98.9 1.9E-08 6.4E-13 88.6 15.2 238 69-342 17-286 (310)
182 1ihg_A Cyclophilin 40; ppiase 98.9 9.8E-09 3.3E-13 93.6 14.0 135 137-295 223-361 (370)
183 1wao_1 Serine/threonine protei 98.9 4.2E-10 1.4E-14 106.3 3.3 90 140-235 9-102 (477)
184 1dce_A Protein (RAB geranylger 98.9 9.1E-08 3.1E-12 92.1 18.4 169 119-293 43-244 (567)
185 3q7a_A Farnesyltransferase alp 98.8 4.7E-07 1.6E-11 81.1 19.6 218 119-340 68-334 (349)
186 1zu2_A Mitochondrial import re 98.8 1.7E-08 6E-13 79.6 8.8 81 119-201 16-121 (158)
187 3mv2_B Coatomer subunit epsilo 98.8 1.3E-07 4.6E-12 83.1 14.4 174 124-310 85-288 (310)
188 2l6j_A TPR repeat-containing p 98.8 6.3E-09 2.2E-13 76.7 4.5 76 101-180 4-89 (111)
189 1zu2_A Mitochondrial import re 98.7 3E-08 1E-12 78.2 8.3 54 258-311 61-127 (158)
190 4e6h_A MRNA 3'-END-processing 98.7 6.7E-07 2.3E-11 87.5 19.4 211 122-341 326-573 (679)
191 3k9i_A BH0479 protein; putativ 98.7 4.6E-08 1.6E-12 73.3 8.9 82 220-305 3-91 (117)
192 2kat_A Uncharacterized protein 98.7 2.3E-07 7.8E-12 69.1 12.0 88 123-212 3-98 (115)
193 1na3_A Designed protein CTPR2; 98.7 1.7E-07 5.7E-12 66.2 10.8 73 139-213 11-87 (91)
194 1dce_A Protein (RAB geranylger 98.7 5.4E-07 1.8E-11 86.7 16.0 163 82-252 46-239 (567)
195 1na3_A Designed protein CTPR2; 98.7 2.6E-07 8.9E-12 65.2 10.5 77 100-180 8-88 (91)
196 2l6j_A TPR repeat-containing p 98.6 3.1E-07 1.1E-11 67.4 10.4 78 136-215 3-90 (111)
197 3ma5_A Tetratricopeptide repea 98.6 3.3E-07 1.1E-11 66.7 10.0 61 100-164 6-68 (100)
198 3ma5_A Tetratricopeptide repea 98.6 3.5E-07 1.2E-11 66.5 10.1 78 135-214 5-88 (100)
199 2kat_A Uncharacterized protein 98.6 1E-06 3.5E-11 65.4 12.0 76 155-236 3-82 (115)
200 3n71_A Histone lysine methyltr 98.5 1.3E-06 4.3E-11 82.4 12.6 110 118-233 322-461 (490)
201 4e6h_A MRNA 3'-END-processing 98.4 4E-05 1.4E-09 75.0 22.2 210 83-307 327-573 (679)
202 3n71_A Histone lysine methyltr 98.3 7.7E-06 2.6E-10 77.0 14.8 126 143-303 315-463 (490)
203 2v5f_A Prolyl 4-hydroxylase su 98.3 5E-06 1.7E-10 60.9 10.6 71 138-210 6-87 (104)
204 2v5f_A Prolyl 4-hydroxylase su 98.2 9.5E-06 3.3E-10 59.4 10.2 73 100-176 4-87 (104)
205 3ly7_A Transcriptional activat 98.2 3.4E-05 1.2E-09 69.2 15.5 163 65-237 163-340 (372)
206 1pc2_A Mitochondria fission pr 98.1 4.2E-05 1.4E-09 59.6 12.4 98 222-320 13-118 (152)
207 2kc7_A BFR218_protein; tetratr 98.1 5.1E-06 1.7E-10 59.6 6.7 63 243-309 4-69 (99)
208 3ly7_A Transcriptional activat 98.1 0.00012 3.9E-09 65.7 16.5 125 182-310 210-345 (372)
209 2kc7_A BFR218_protein; tetratr 98.1 1.3E-05 4.4E-10 57.4 8.5 56 142-199 5-63 (99)
210 3qww_A SET and MYND domain-con 98.0 1.5E-05 5.1E-10 73.8 9.3 80 118-199 311-410 (433)
211 3u64_A Protein TP_0956; tetrat 98.0 5.3E-05 1.8E-09 65.3 11.3 81 222-305 178-270 (301)
212 1pc2_A Mitochondria fission pr 98.0 0.00015 5.1E-09 56.5 12.1 87 121-209 14-111 (152)
213 3qwp_A SET and MYND domain-con 97.9 7.2E-05 2.5E-09 69.2 11.4 79 119-199 301-399 (429)
214 3qww_A SET and MYND domain-con 97.9 7.9E-05 2.7E-09 69.0 11.5 81 149-235 310-410 (433)
215 4g26_A Pentatricopeptide repea 97.9 0.0013 4.4E-08 62.1 19.2 162 136-305 24-205 (501)
216 4g26_A Pentatricopeptide repea 97.8 0.0036 1.2E-07 59.0 21.8 146 118-273 39-205 (501)
217 3bee_A Putative YFRE protein; 97.8 0.0001 3.5E-09 52.6 8.3 70 237-307 4-75 (93)
218 3u64_A Protein TP_0956; tetrat 97.8 9.3E-05 3.2E-09 63.8 9.3 98 100-199 151-268 (301)
219 3bee_A Putative YFRE protein; 97.8 8.2E-05 2.8E-09 53.1 7.7 68 99-167 4-73 (93)
220 3qwp_A SET and MYND domain-con 97.7 0.00034 1.1E-08 64.8 11.5 81 149-235 299-399 (429)
221 1nzn_A CGI-135 protein, fissio 97.4 0.0033 1.1E-07 47.1 12.1 98 222-320 16-121 (126)
222 3ffl_A Anaphase-promoting comp 97.0 0.0052 1.8E-07 48.2 9.6 129 68-213 23-165 (167)
223 2uy1_A Cleavage stimulation fa 96.9 0.12 4.1E-06 48.4 20.2 255 65-335 14-380 (493)
224 3ffl_A Anaphase-promoting comp 96.8 0.0081 2.8E-07 47.1 9.3 115 119-249 34-165 (167)
225 1nzn_A CGI-135 protein, fissio 96.7 0.049 1.7E-06 40.7 12.6 62 136-199 34-102 (126)
226 2uy1_A Cleavage stimulation fa 96.7 0.1 3.5E-06 48.9 17.7 170 121-301 195-380 (493)
227 3o48_A Mitochondria fission 1 96.7 0.016 5.4E-07 43.6 9.5 82 238-320 39-125 (134)
228 1y8m_A FIS1; mitochondria, unk 96.4 0.048 1.6E-06 41.5 10.5 83 237-320 37-124 (144)
229 3mkq_A Coatomer beta'-subunit; 95.5 1.1 3.6E-05 44.2 19.4 148 119-300 613-761 (814)
230 4ady_A RPN2, 26S proteasome re 94.8 2.4 8.3E-05 42.6 18.9 193 90-303 365-588 (963)
231 1y8m_A FIS1; mitochondria, unk 94.3 1.3 4.4E-05 33.6 12.6 80 98-178 36-120 (144)
232 3o48_A Mitochondria fission 1 93.9 0.84 2.9E-05 34.2 10.3 81 97-178 36-121 (134)
233 4h7y_A Dual specificity protei 93.4 0.35 1.2E-05 37.2 7.7 51 257-307 74-126 (161)
234 3mkq_B Coatomer subunit alpha; 93.0 2.7 9.2E-05 33.2 14.3 108 100-232 7-114 (177)
235 3mkq_A Coatomer beta'-subunit; 92.6 2.7 9.2E-05 41.2 15.2 66 118-197 642-707 (814)
236 4ady_A RPN2, 26S proteasome re 92.5 9.8 0.00033 38.4 20.9 213 76-309 385-628 (963)
237 1ya0_A SMG-7 transcript varian 92.4 0.64 2.2E-05 43.4 9.7 72 242-317 155-230 (497)
238 3mkq_B Coatomer subunit alpha; 91.7 4.1 0.00014 32.2 14.6 54 136-197 7-60 (177)
239 3kae_A CDC27, possible protein 91.4 4.1 0.00014 32.0 11.4 87 105-200 37-143 (242)
240 1ya0_A SMG-7 transcript varian 91.4 0.65 2.2E-05 43.4 8.5 74 139-214 154-231 (497)
241 2wpv_A GET4, UPF0363 protein Y 90.9 4.6 0.00016 35.1 12.9 133 66-231 14-158 (312)
242 4h7y_A Dual specificity protei 90.5 3.3 0.00011 31.8 10.0 31 135-165 11-47 (161)
243 3txn_A 26S proteasome regulato 90.2 9.5 0.00032 34.3 14.7 87 208-302 104-208 (394)
244 1wy6_A Hypothetical protein ST 88.3 3.9 0.00013 30.9 8.8 88 222-315 76-165 (172)
245 1wy6_A Hypothetical protein ST 84.7 7.6 0.00026 29.3 8.7 60 149-210 103-164 (172)
246 3txn_A 26S proteasome regulato 84.5 17 0.00057 32.7 12.8 90 140-235 102-209 (394)
247 2wpv_A GET4, UPF0363 protein Y 84.4 20 0.00067 31.1 16.0 132 121-267 13-158 (312)
248 3kae_A CDC27, possible protein 83.5 14 0.0005 28.9 12.5 108 119-237 16-144 (242)
249 1qsa_A Protein (soluble lytic 83.0 28 0.00095 33.4 14.4 121 77-201 226-349 (618)
250 2ff4_A Probable regulatory pro 82.4 12 0.00041 33.5 11.1 55 141-197 175-231 (388)
251 4b4t_R RPN7, 26S proteasome re 80.4 3.4 0.00012 37.7 6.7 92 138-235 132-236 (429)
252 4b4t_R RPN7, 26S proteasome re 80.4 2.7 9.3E-05 38.4 6.1 93 101-199 131-236 (429)
253 4gns_B Protein CSD3, chitin bi 78.7 11 0.00038 37.0 10.1 43 258-300 352-396 (754)
254 3lpz_A GET4 (YOR164C homolog); 76.2 39 0.0013 29.5 17.8 27 200-230 133-159 (336)
255 3lpz_A GET4 (YOR164C homolog); 75.1 42 0.0014 29.3 16.4 131 119-266 10-159 (336)
256 4gns_B Protein CSD3, chitin bi 74.9 17 0.00058 35.7 10.2 109 82-196 266-396 (754)
257 2ff4_A Probable regulatory pro 74.7 13 0.00044 33.3 8.8 17 220-236 128-144 (388)
258 2w2u_A Hypothetical P60 katani 71.2 8 0.00027 26.2 5.0 33 259-304 16-48 (83)
259 2v6y_A AAA family ATPase, P60 70.3 8.5 0.00029 26.1 5.0 32 260-304 9-40 (83)
260 3spa_A Mtrpol, DNA-directed RN 69.0 67 0.0023 32.9 12.9 108 220-335 140-258 (1134)
261 2w2u_A Hypothetical P60 katani 68.4 5.2 0.00018 27.2 3.5 18 148-165 30-47 (83)
262 3spa_A Mtrpol, DNA-directed RN 67.7 39 0.0013 34.6 10.9 81 119-201 141-231 (1134)
263 2v6y_A AAA family ATPase, P60 67.1 5.6 0.00019 27.0 3.5 18 148-165 22-39 (83)
264 4fhn_B Nucleoporin NUP120; pro 66.5 17 0.00057 37.7 8.5 92 100-197 841-964 (1139)
265 4b4t_P 26S proteasome regulato 65.6 62 0.0021 29.4 11.4 92 102-199 138-246 (445)
266 4a5x_A MITD1, MIT domain-conta 62.8 12 0.00041 25.5 4.6 35 257-304 11-45 (86)
267 1zbp_A Hypothetical protein VP 61.6 7.4 0.00025 32.9 3.9 53 258-310 12-66 (273)
268 4b4t_P 26S proteasome regulato 59.1 58 0.002 29.6 9.9 91 139-235 139-246 (445)
269 3re2_A Predicted protein; meni 58.9 44 0.0015 29.5 8.3 72 92-165 246-324 (472)
270 1wfd_A Hypothetical protein 15 58.6 21 0.00073 24.6 5.3 33 258-303 11-43 (93)
271 3t5x_A PCI domain-containing p 55.0 15 0.00053 29.5 4.7 28 241-272 16-43 (203)
272 1wfd_A Hypothetical protein 15 54.0 13 0.00045 25.7 3.6 33 120-165 11-43 (93)
273 3u84_A Menin; MLL, JUND, ledgf 53.8 65 0.0022 29.0 8.6 72 92-165 268-346 (550)
274 2cpt_A SKD1 protein, vacuolar 53.1 20 0.00069 26.0 4.6 33 258-303 14-46 (117)
275 4a5x_A MITD1, MIT domain-conta 50.8 20 0.00068 24.4 4.0 32 121-165 13-44 (86)
276 3re2_A Predicted protein; meni 50.6 37 0.0013 29.9 6.5 64 238-303 254-324 (472)
277 3o10_A Sacsin; all-helical dom 49.4 43 0.0015 25.0 6.2 50 220-279 3-52 (141)
278 4gq4_A Menin; tumor suppressor 46.7 84 0.0029 28.3 8.2 73 91-165 252-331 (489)
279 2cpt_A SKD1 protein, vacuolar 45.1 28 0.00096 25.2 4.3 32 121-165 15-46 (117)
280 2dl1_A Spartin; SPG20, MIT, st 43.7 20 0.00067 26.0 3.2 32 120-164 18-49 (116)
281 3u84_A Menin; MLL, JUND, ledgf 42.9 55 0.0019 29.5 6.4 64 238-303 276-346 (550)
282 2crb_A Nuclear receptor bindin 41.4 43 0.0015 23.1 4.4 26 140-165 18-43 (97)
283 3bge_A Predicted ATPase; struc 41.4 1.3E+02 0.0046 23.9 8.0 28 186-213 62-89 (201)
284 2rpa_A Katanin P60 ATPase-cont 41.3 18 0.00061 24.2 2.5 26 140-165 15-40 (78)
285 4gq2_M Nucleoporin NUP120; bet 41.2 69 0.0024 32.4 8.0 29 100-132 839-867 (950)
286 4a1g_A Mitotic checkpoint seri 39.5 1.2E+02 0.0042 22.9 9.8 43 124-166 84-130 (152)
287 2v6x_A Vacuolar protein sortin 38.6 47 0.0016 22.2 4.5 34 258-304 9-42 (85)
288 3o10_A Sacsin; all-helical dom 37.5 74 0.0025 23.7 5.8 44 117-166 2-45 (141)
289 2dl1_A Spartin; SPG20, MIT, st 35.8 1.2E+02 0.0041 21.8 6.3 16 288-303 35-50 (116)
290 1qsa_A Protein (soluble lytic 35.1 3E+02 0.01 26.2 23.2 116 183-304 226-348 (618)
291 4gq4_A Menin; tumor suppressor 34.5 91 0.0031 28.1 6.5 28 275-302 303-330 (489)
292 2r9g_A AAA ATPase, central reg 33.1 87 0.003 25.0 5.7 23 190-212 72-94 (204)
293 3ctd_A Putative ATPase, AAA fa 32.9 1.4E+02 0.0049 24.0 6.9 27 187-213 91-117 (213)
294 2v6x_A Vacuolar protein sortin 32.8 64 0.0022 21.6 4.4 17 149-165 25-41 (85)
295 2ymb_A MITD1, MIT domain-conta 32.4 9.4 0.00032 32.0 0.0 42 112-166 11-52 (257)
296 1om2_A Protein (mitochondrial 31.6 1.3E+02 0.0044 20.8 6.5 46 117-171 9-55 (95)
297 2wvi_A Mitotic checkpoint seri 31.3 1.8E+02 0.0061 22.4 9.8 43 124-166 79-125 (164)
298 4aez_C MAD3, mitotic spindle c 31.3 2.1E+02 0.0072 23.2 10.6 43 124-166 133-179 (223)
299 1fs1_A SKP2 F-BOX, cyclin A/CD 29.7 49 0.0017 19.5 3.0 39 59-97 7-45 (53)
300 3esl_A Checkpoint serine/threo 29.5 1.7E+02 0.0057 23.4 6.8 48 258-305 94-145 (202)
301 4ae4_A Ubiquitin-associated pr 29.1 1.6E+02 0.0055 21.2 11.3 35 127-162 11-45 (118)
302 4b4t_S RPN3, 26S proteasome re 28.5 82 0.0028 29.4 5.5 61 137-199 231-298 (523)
303 1o9d_A 14-3-3-like protein C; 26.7 2.8E+02 0.0095 23.1 13.9 47 258-304 150-207 (260)
304 4a1g_A Mitotic checkpoint seri 26.6 1.5E+02 0.005 22.5 5.8 44 262-305 84-131 (152)
305 3ax2_A Mitochondrial import re 26.4 1.4E+02 0.0047 19.5 5.7 25 142-166 22-46 (73)
306 2ymb_A MITD1, MIT domain-conta 24.3 16 0.00055 30.6 0.0 39 252-303 13-51 (257)
307 3eab_A Spastin; spastin, MIT, 23.4 93 0.0032 21.2 3.7 15 289-303 33-47 (89)
308 2wvi_A Mitotic checkpoint seri 23.4 1.4E+02 0.0048 23.0 5.2 44 262-305 79-126 (164)
309 4gq2_M Nucleoporin NUP120; bet 22.7 96 0.0033 31.4 5.3 31 135-165 838-868 (950)
310 4fhn_B Nucleoporin NUP120; pro 22.2 1.2E+02 0.004 31.4 5.9 63 135-199 840-927 (1139)
311 4aez_C MAD3, mitotic spindle c 20.7 1.8E+02 0.0062 23.6 5.6 33 273-305 148-180 (223)
312 3ctd_A Putative ATPase, AAA fa 20.1 3.4E+02 0.012 21.8 8.6 22 260-281 92-113 (213)
No 1
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=100.00 E-value=3.7e-33 Score=263.20 Aligned_cols=255 Identities=17% Similarity=0.163 Sum_probs=231.2
Q ss_pred HHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCCCHHHH--HHHHHHHhcC----CCHH
Q 019340 81 LRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAM--VDAGLMYWEM----DKKE 154 (342)
Q Consensus 81 ~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~--~~lg~~~~~~----~~~~ 154 (342)
+.++......+.+.. ..+++.+++.||.+|.. .|+.+++++|+.+|+++++.++..+. ++||.+|..+ +|++
T Consensus 157 ~~~~~~~a~~~~~~a-~~~~~~a~~~Lg~~~~~-~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~ 234 (452)
T 3e4b_A 157 YDQHLDDVERICKAA-LNTTDICYVELATVYQK-KQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEK 234 (452)
T ss_dssp GGGGHHHHHHHHHHH-TTTCTTHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHH
T ss_pred cccCHHHHHHHHHHH-HcCCHHHHHHHHHHHHH-cCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHH
Confidence 333433334444443 34567799999999999 67777999999999999999977777 9999999887 8999
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHc-CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Q 019340 155 AAISLYRQAAVLGDPAGQFNLGISYLQ-AQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRA 233 (342)
Q Consensus 155 ~A~~~~~~a~~~~~~~a~~~Lg~~~~~-g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A 233 (342)
+|+.+|++++ .+++.++++||.+|.. ...+++++|+.+|+++++.+++.++++||.+|..|.|+++|+++|+.||++|
T Consensus 235 ~A~~~~~~aa-~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A 313 (452)
T 3e4b_A 235 TAQALLEKIA-PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYYEGKWVPADAKAAEAHFEKA 313 (452)
T ss_dssp HHHHHHHHHG-GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHTT
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 9999999999 9999999999999552 2589999999999999999999999999999999999999999999999999
Q ss_pred HHCCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHhhh----cCCHHHHHHHHHHHHHcCcHHH
Q 019340 234 AEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHGLGLFT----EGEMMKAVVYLELATRAGETAA 309 (342)
Q Consensus 234 ~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~----~~~~~~A~~~~~~a~~~~~~~a 309 (342)
+ .+++.++++||.+|..|.|+++|+++|+.||++|++.+++.++++||.+|.. ..|+++|..||++|++.|++++
T Consensus 314 a-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~a 392 (452)
T 3e4b_A 314 V-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPEA 392 (452)
T ss_dssp T-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHHH
T ss_pred h-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHHH
Confidence 9 9999999999999999999999999999999999999999999999999986 5699999999999999999999
Q ss_pred HHHHHHHHhhcChhcHHHHHHHHHhhhcCC
Q 019340 310 DHVKNVILQQLSATSRDRAMLVVDSWRAMP 339 (342)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 339 (342)
...+..+...++..++++++.++++|++.+
T Consensus 393 ~~~l~~l~~~~~~~~~~~a~~~~~~~~~~~ 422 (452)
T 3e4b_A 393 NDLATQLEAPLTPAQRAEGQRLVQQELAAR 422 (452)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999998754
No 2
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=100.00 E-value=1.4e-31 Score=254.75 Aligned_cols=254 Identities=24% Similarity=0.307 Sum_probs=161.2
Q ss_pred ChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhc----CCCH
Q 019340 78 LPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWE----MDKK 153 (342)
Q Consensus 78 ~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~----~~~~ 153 (342)
.+++.+|.. |++.+.+.+++.+++.||.+|..|.|+.+|+++|+.+|++|++.+++.+++.||.+|.. .+|+
T Consensus 56 ~~~~~~A~~----~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~ 131 (490)
T 2xm6_A 56 TKDLTQAMD----WFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDK 131 (490)
T ss_dssp CCCHHHHHH----HHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCH
T ss_pred CcCHHHHHH----HHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCH
Confidence 455555543 33333334566777777777777666667777777777777776777777777777666 4667
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHcC--CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Q 019340 154 EAAISLYRQAAVLGDPAGQFNLGISYLQA--QPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYL 231 (342)
Q Consensus 154 ~~A~~~~~~a~~~~~~~a~~~Lg~~~~~g--~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~ 231 (342)
++|+.+|+++++.+++.++++||.+|..| ..+++++|+.+|+++++.+++.++++||.+|..|.|+.+|+++|+.+|+
T Consensus 132 ~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~ 211 (490)
T 2xm6_A 132 AESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYR 211 (490)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHH
Confidence 77777777777667777777777666642 2566666666666666666666666666666666666666666666666
Q ss_pred HHHHCCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHhhh----cCCHHHHHHHHHHHHHcCcH
Q 019340 232 RAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHGLGLFT----EGEMMKAVVYLELATRAGET 307 (342)
Q Consensus 232 ~A~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~----~~~~~~A~~~~~~a~~~~~~ 307 (342)
++++.+++.++++||.+|..|.|+.+|+++|+.||+++++.+++.++++||.+|.. .+++++|+.||+++++.+++
T Consensus 212 ~a~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~ 291 (490)
T 2xm6_A 212 KSATSGDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNS 291 (490)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCH
T ss_pred HHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence 66666666666666666666666666666666666666666666666666666665 56666666666666666666
Q ss_pred HHHHHHHHHHhhc---ChhcHHHHHHHHHhh
Q 019340 308 AADHVKNVILQQL---SATSRDRAMLVVDSW 335 (342)
Q Consensus 308 ~a~~~~~~~~~~~---~~~~~~~a~~~~~~~ 335 (342)
++...++.+.... ...+.++|...+++.
T Consensus 292 ~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a 322 (490)
T 2xm6_A 292 DGQYYLAHLYDKGAEGVAKNREQAISWYTKS 322 (490)
T ss_dssp HHHHHHHHHHHHCBTTBCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCcCCHHHHHHHHHHH
Confidence 6666555555443 114555555544443
No 3
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=100.00 E-value=1e-31 Score=235.81 Aligned_cols=252 Identities=20% Similarity=0.240 Sum_probs=230.7
Q ss_pred cHHHHHHHHhhCCChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCCCHHHHHHHH
Q 019340 65 PFDVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAG 144 (342)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~lg 144 (342)
+......+...+..+++.+|...+.+..+ .+++.+++.||.+|..|.|+.+++++|+.+|+++++.+++.+++.+|
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~----~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg 81 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACD----LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLG 81 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 33445555556677899999766666555 56899999999999999999999999999999999999999999999
Q ss_pred HHHhc----CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHc--CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCC
Q 019340 145 LMYWE----MDKKEAAISLYRQAAVLGDPAGQFNLGISYLQ--AQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRG 218 (342)
Q Consensus 145 ~~~~~----~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~--g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~ 218 (342)
.+|.. .+++++|+.+|+++++.+++.++++||.+|.. +..+++++|+.+|+++++.+++.+++++|.+|..|.+
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~ 161 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAGRG 161 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSS
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCCC
Confidence 99999 99999999999999999999999999999994 2389999999999999999999999999999999888
Q ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHhhh----cCCHHHH
Q 019340 219 VDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHGLGLFT----EGEMMKA 294 (342)
Q Consensus 219 ~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~----~~~~~~A 294 (342)
+.+++++|+.+|+++++.+++.+++++|.+|..|.|+.+++++|+.+|+++++.+++.++++||.+|.. .+++++|
T Consensus 162 ~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~~~~~~~~~A 241 (273)
T 1ouv_A 162 TPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQA 241 (273)
T ss_dssp SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTH
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccCHHHH
Confidence 899999999999999999999999999999999988899999999999999999999999999999999 9999999
Q ss_pred HHHHHHHHHcCcHHHHHHHHHHHhhc
Q 019340 295 VVYLELATRAGETAADHVKNVILQQL 320 (342)
Q Consensus 295 ~~~~~~a~~~~~~~a~~~~~~~~~~~ 320 (342)
+.+|++|++.++.++...+..+....
T Consensus 242 ~~~~~~a~~~~~~~a~~~l~~~~~~~ 267 (273)
T 1ouv_A 242 IENFKKGCKLGAKGACDILKQLKIKV 267 (273)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTCCCCC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999998877655443
No 4
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=100.00 E-value=4e-31 Score=251.64 Aligned_cols=256 Identities=18% Similarity=0.193 Sum_probs=230.4
Q ss_pred ChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhc----CCCH
Q 019340 78 LPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWE----MDKK 153 (342)
Q Consensus 78 ~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~----~~~~ 153 (342)
.+++.+|. .|++.+...+++.+++.||.+|..|.|+.+|+++|+.+|+++++.+++.+++.||.+|.. .+|+
T Consensus 92 ~~~~~~A~----~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~ 167 (490)
T 2xm6_A 92 PQDYAQAV----IWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDY 167 (490)
T ss_dssp CCCHHHHH----HHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCH
T ss_pred CCCHHHHH----HHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCH
Confidence 56777775 455555567899999999999999999999999999999999999999999999999988 6899
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHc--CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Q 019340 154 EAAISLYRQAAVLGDPAGQFNLGISYLQ--AQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYL 231 (342)
Q Consensus 154 ~~A~~~~~~a~~~~~~~a~~~Lg~~~~~--g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~ 231 (342)
++|+.+|+++++.+++.++++||.+|.. |..+++++|+.+|+++++.+++.+++.||.+|..|.++.+|+++|+.+|+
T Consensus 168 ~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~ 247 (490)
T 2xm6_A 168 VMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSGDELGQLHLADMYYFGIGVTQDYTQSRVLFS 247 (490)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 9999999999999999999999999985 34899999999999999999999999999999999888999999999999
Q ss_pred HHHHCCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHhhhc-----CCHHHHHHHHHHHHHcCc
Q 019340 232 RAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHGLGLFTE-----GEMMKAVVYLELATRAGE 306 (342)
Q Consensus 232 ~A~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~~-----~~~~~A~~~~~~a~~~~~ 306 (342)
++++.+++.++++||.+|..|.|+.+|+++|+.||+++++.+++.++++||.+|... +++++|+.||+++++.++
T Consensus 248 ~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~ 327 (490)
T 2xm6_A 248 QSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGD 327 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCC
Confidence 999999999999999999999888999999999999999999999999999999887 899999999999999999
Q ss_pred HHHHHHHHHHHhhc-ChhcHHHHHHHHHhhhc
Q 019340 307 TAADHVKNVILQQL-SATSRDRAMLVVDSWRA 337 (342)
Q Consensus 307 ~~a~~~~~~~~~~~-~~~~~~~a~~~~~~~~~ 337 (342)
+++..+++.++... ...+.++|.+.+++...
T Consensus 328 ~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~ 359 (490)
T 2xm6_A 328 ATAQANLGAIYFRLGSEEEHKKAVEWFRKAAA 359 (490)
T ss_dssp HHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcccHHHHHHHHHHHHH
Confidence 99999999888765 24477888887776544
No 5
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=100.00 E-value=2.2e-31 Score=225.76 Aligned_cols=196 Identities=19% Similarity=0.127 Sum_probs=181.2
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHc-CCccCHHHHHHHHHHHHHc
Q 019340 122 DKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQFNLGISYLQ-AQPANAEEAVKLLYQASIA 200 (342)
Q Consensus 122 ~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~-g~~~~~~~A~~~~~~a~~~ 200 (342)
++|+.+|+++++.+++.+++.||.+|...+|+++|+.+|+++++.+++.++++||.+|.. |...++++|+.+|+++++.
T Consensus 3 ~eA~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~A~~~ 82 (212)
T 3rjv_A 3 TEPGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIRNPQQADYPQARQLAEKAVEA 82 (212)
T ss_dssp -CTTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTSSTTSCCHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHC
Confidence 468999999999999999999999999999999999999999999999999999999984 2344999999999999999
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCC----HHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc-CCH
Q 019340 201 GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGY----VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC-GHG 275 (342)
Q Consensus 201 ~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~~~----~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~-~~~ 275 (342)
+++.++++||.+|..|.++.+|+++|+.+|++|++.++ +.++++||.+|..|.|+++|+++|+.||++|++. +++
T Consensus 83 g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~ 162 (212)
T 3rjv_A 83 GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLSRTG 162 (212)
T ss_dssp TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTSCTT
T ss_pred CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCCH
Confidence 99999999999999999999999999999999999998 8999999999999999999999999999999998 889
Q ss_pred HHHHHHHHHhhhc-C-----CHHHHHHHHHHHHHcCcHHHHHHHHHHH
Q 019340 276 KAQLEHGLGLFTE-G-----EMMKAVVYLELATRAGETAADHVKNVIL 317 (342)
Q Consensus 276 ~a~~~Lg~~~~~~-~-----~~~~A~~~~~~a~~~~~~~a~~~~~~~~ 317 (342)
.++++||.+|... | |+++|+.||++|++.|++++...+..+.
T Consensus 163 ~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~~A~~~l~~l~ 210 (212)
T 3rjv_A 163 YAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFDTGCEEFDRIS 210 (212)
T ss_dssp HHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 9999999999763 3 8999999999999999999998877654
No 6
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=100.00 E-value=4e-30 Score=225.64 Aligned_cols=240 Identities=15% Similarity=0.158 Sum_probs=220.7
Q ss_pred cCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhc----CCCHHHHHHHHHHHHhCCCHHHH
Q 019340 97 PLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWE----MDKKEAAISLYRQAAVLGDPAGQ 172 (342)
Q Consensus 97 ~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~----~~~~~~A~~~~~~a~~~~~~~a~ 172 (342)
+.+++.+++.+|.+|... +++++|+.+|+++++.+++.+++.+|.+|.. .+++++|+.+|+++++.+++.++
T Consensus 2 ~~~~~~a~~~lg~~~~~~----~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~ 77 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKE----KDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGC 77 (273)
T ss_dssp ---CHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred CCCChHHHHHHHHHHHhC----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHH
Confidence 356899999999999994 8999999999999999999999999999999 99999999999999999999999
Q ss_pred HHHHHHHHc--CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 019340 173 FNLGISYLQ--AQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYS 250 (342)
Q Consensus 173 ~~Lg~~~~~--g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~y~ 250 (342)
++||.+|.. |..+++++|+.+|+++++.+++.++++||.+|..|.++.+++++|+.+|+++++.+++.+++++|.+|.
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~ 157 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYD 157 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 999999994 238999999999999999999999999999999998889999999999999999999999999999999
Q ss_pred cCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHhhh----cCCHHHHHHHHHHHHHcCcHHHHHHHHHHHhhc--Chhc
Q 019340 251 FGEGLPLSHRQARKWMKRAADCGHGKAQLEHGLGLFT----EGEMMKAVVYLELATRAGETAADHVKNVILQQL--SATS 324 (342)
Q Consensus 251 ~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~----~~~~~~A~~~~~~a~~~~~~~a~~~~~~~~~~~--~~~~ 324 (342)
.|.++.+++++|+.+|+++++.+++.++++||.+|.. .+++++|+.+|+++++.+++.+..+++.++... ..++
T Consensus 158 ~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~~~~~~ 237 (273)
T 1ouv_A 158 AGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRN 237 (273)
T ss_dssp HTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCC
T ss_pred cCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccC
Confidence 9888888999999999999999999999999999999 999999999999999999999999998888762 2567
Q ss_pred HHHHHHHHHhhhcCCC
Q 019340 325 RDRAMLVVDSWRAMPS 340 (342)
Q Consensus 325 ~~~a~~~~~~~~~~~~ 340 (342)
.++|...+++..+..|
T Consensus 238 ~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 238 EKQAIENFKKGCKLGA 253 (273)
T ss_dssp STTHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHcCC
Confidence 7888887777655443
No 7
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.97 E-value=1.9e-29 Score=213.78 Aligned_cols=190 Identities=18% Similarity=0.140 Sum_probs=179.3
Q ss_pred HHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCC----CHHHHHHHHHHHHh
Q 019340 90 SWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMD----KKEAAISLYRQAAV 165 (342)
Q Consensus 90 ~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~----~~~~A~~~~~~a~~ 165 (342)
.|++.+++.+++.+++.||.+|.. .+|+++|+.+|++|++.+++.++++||.+|.. + |+++|+.+|+++++
T Consensus 7 ~~~~~aa~~g~~~a~~~lg~~~~~----~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~ 81 (212)
T 3rjv_A 7 SQYQQQAEAGDRRAQYYLADTWVS----SGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVE 81 (212)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhc----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH
Confidence 466666677899999999999999 58999999999999999999999999999998 6 99999999999999
Q ss_pred CCCHHHHHHHHHHHHc--CCccCHHHHHHHHHHHHHcCC----HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC-CC
Q 019340 166 LGDPAGQFNLGISYLQ--AQPANAEEAVKLLYQASIAGH----VRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG-GY 238 (342)
Q Consensus 166 ~~~~~a~~~Lg~~~~~--g~~~~~~~A~~~~~~a~~~~~----~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~-~~ 238 (342)
.+++.++++||.+|.. |..+|+++|+.+|+++++.++ +.++++||.+|..|.++.+|+++|+.||++|++. ++
T Consensus 82 ~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 161 (212)
T 3rjv_A 82 AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLSRT 161 (212)
T ss_dssp TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTSCT
T ss_pred CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCC
Confidence 9999999999999995 348999999999999999998 9999999999999999999999999999999998 89
Q ss_pred HHHHHHHHHHHHcCCC--CcccHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 019340 239 VRAMYNTSLCYSFGEG--LPLSHRQARKWMKRAADCGHGKAQLEHGLG 284 (342)
Q Consensus 239 ~~a~~~lg~~y~~g~g--~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~ 284 (342)
+.++++||.+|..|.| +++|+++|+.||++|++.++..+...|+.+
T Consensus 162 ~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~~A~~~l~~l 209 (212)
T 3rjv_A 162 GYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFDTGCEEFDRI 209 (212)
T ss_dssp THHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 9999999999999977 999999999999999999999999998874
No 8
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.96 E-value=9.4e-29 Score=233.06 Aligned_cols=235 Identities=15% Similarity=0.064 Sum_probs=196.5
Q ss_pred CCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCC---CHHHHHHHHHHHHhCCCHHHH--
Q 019340 98 LREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMD---KKEAAISLYRQAAVLGDPAGQ-- 172 (342)
Q Consensus 98 ~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~---~~~~A~~~~~~a~~~~~~~a~-- 172 (342)
.+++.+++.||.+|..|.++.++.+++..++ +++..+++.++++||.+|...| ++++|+.+|+++++.+++.+.
T Consensus 138 ~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~-~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~ 216 (452)
T 3e4b_A 138 AGYPEAGLAQVLLYRTQGTYDQHLDDVERIC-KAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRV 216 (452)
T ss_dssp HTCTTHHHHHHHHHHHHTCGGGGHHHHHHHH-HHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCcccCHHHHHHHH-HHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHH
Confidence 3344455555555555444445555544433 3344466778889999998888 999999999999999888887
Q ss_pred HHHHHHHHc--CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 019340 173 FNLGISYLQ--AQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYS 250 (342)
Q Consensus 173 ~~Lg~~~~~--g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~y~ 250 (342)
++||.+|.. |..+++++|+.+|++++ ++++.++++||.+|..|.+ .+|+++|+.+|++|++.+++.++++||.+|.
T Consensus 217 ~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g~~~a~~~Lg~~~~~~~~-~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~ 294 (452)
T 3e4b_A 217 DSVARVLGDATLGTPDEKTAQALLEKIA-PGYPASWVSLAQLLYDFPE-LGDVEQMMKYLDNGRAADQPRAELLLGKLYY 294 (452)
T ss_dssp HHHHHHHTCGGGSSCCHHHHHHHHHHHG-GGSTHHHHHHHHHHHHSGG-GCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCCCHHHHHHHHHHHc-CCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 999999985 35689999999999999 9999999999999765544 7899999999999999999999999999999
Q ss_pred cCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHhhh----cCCHHHHHHHHHHHHHcCcHHHHHHHHHHHhhcC--hhc
Q 019340 251 FGEGLPLSHRQARKWMKRAADCGHGKAQLEHGLGLFT----EGEMMKAVVYLELATRAGETAADHVKNVILQQLS--ATS 324 (342)
Q Consensus 251 ~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~----~~~~~~A~~~~~~a~~~~~~~a~~~~~~~~~~~~--~~~ 324 (342)
.|.|+++|+++|+.||++|+ .+++.++++||.+|.. ..|+++|+.||++|++.|+++++.+++.++.... ..+
T Consensus 295 ~G~g~~~d~~~A~~~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d 373 (452)
T 3e4b_A 295 EGKWVPADAKAAEAHFEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPD 373 (452)
T ss_dssp HCSSSCCCHHHHHHHHHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCC
T ss_pred cCCCCCCCHHHHHHHHHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCC
Confidence 99999999999999999999 9999999999999987 4599999999999999999999999999988764 356
Q ss_pred HHHHHHHHHhhh
Q 019340 325 RDRAMLVVDSWR 336 (342)
Q Consensus 325 ~~~a~~~~~~~~ 336 (342)
..+|...++.-.
T Consensus 374 ~~~A~~~~~~A~ 385 (452)
T 3e4b_A 374 PLNAYVFSQLAK 385 (452)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 677776665543
No 9
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.91 E-value=9.6e-22 Score=180.65 Aligned_cols=253 Identities=16% Similarity=0.036 Sum_probs=120.8
Q ss_pred HHHHhhCCChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHH
Q 019340 70 NKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMY 147 (342)
Q Consensus 70 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~ 147 (342)
..+...+..|++.+|...+.+..+..++ ++.+++.+|.++.. .+++++|+..|++++.. ++..++..+|.++
T Consensus 72 ~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 145 (388)
T 1w3b_A 72 NLGNVYKERGQLQEAIEHYRHALRLKPD--FIDGYINLAAALVA----AGDMEGAVQAYVSALQYNPDLYCVRSDLGNLL 145 (388)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHH----HSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCcc--hHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 3333344556666666666555554433 45555555655555 34555555555555443 2344455555555
Q ss_pred hcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCCCCH
Q 019340 148 WEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNL 223 (342)
Q Consensus 148 ~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~ 223 (342)
...|++++|+.+|+++++. +++.++.++|.++. ..+++++|+.+|+++++. +++.++.++|.++.. .+++
T Consensus 146 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~--~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~~~~ 219 (388)
T 1w3b_A 146 KALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFN--AQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKE----ARIF 219 (388)
T ss_dssp HTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH--TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT----TTCT
T ss_pred HHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH--HcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH----cCCH
Confidence 5555555555555555432 44555555555555 455555555555554432 344455555555544 3344
Q ss_pred HHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhhcCCHHHHHHHHH
Q 019340 224 QEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLE 299 (342)
Q Consensus 224 ~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~ 299 (342)
++|+..|++++.. +++.++.++|.+|.. . +++++|+.+|+++++. .++.+++++|.++...|++++|+.+|+
T Consensus 220 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~---g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 295 (388)
T 1w3b_A 220 DRAVAAYLRALSLSPNHAVVHGNLACVYYE-Q---GLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYN 295 (388)
T ss_dssp THHHHHHHHHHHHCTTCHHHHHHHHHHHHH-T---TCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCcCCHHHHHHHHHHHHH-c---CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4444444444433 234444444444432 1 1444455555444443 234444444444444444444444444
Q ss_pred HHHHcCcHHHHHHHHHHHhhcChhcHHHHHHHHHhhhcC
Q 019340 300 LATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRAM 338 (342)
Q Consensus 300 ~a~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 338 (342)
++++..+.+..........+...++.++|...+++..+.
T Consensus 296 ~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 334 (388)
T 1w3b_A 296 TALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEV 334 (388)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS
T ss_pred HHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 444443333322223333333334444444444444443
No 10
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.91 E-value=9.2e-22 Score=180.78 Aligned_cols=258 Identities=17% Similarity=0.050 Sum_probs=223.6
Q ss_pred HHHHHHhhCCChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHH
Q 019340 68 VLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGL 145 (342)
Q Consensus 68 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~ 145 (342)
....+......|++.+|...+....+..++ ...++..+|.++.. .+++++|+.+|++++.. +++.++..+|.
T Consensus 104 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 177 (388)
T 1w3b_A 104 YINLAAALVAAGDMEGAVQAYVSALQYNPD--LYCVRSDLGNLLKA----LGRLEEAKACYLKAIETQPNFAVAWSNLGC 177 (388)
T ss_dssp HHHHHHHHHHHSCSSHHHHHHHHHHHHCTT--CTHHHHHHHHHHHT----TSCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 344444456778888998888888877654 77888999999998 58999999999999985 47899999999
Q ss_pred HHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCCC
Q 019340 146 MYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDF 221 (342)
Q Consensus 146 ~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~ 221 (342)
++...|++++|+.+|+++++. +++.++.++|.++. ..+++++|+..|++++.. +++.+++++|.+|.. .+
T Consensus 178 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~--~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~g 251 (388)
T 1w3b_A 178 VFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLK--EARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYE----QG 251 (388)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH--TTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TT
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH--HcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHH----cC
Confidence 999999999999999999855 78999999999999 899999999999998874 589999999999988 77
Q ss_pred CHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhhcCCHHHHHHH
Q 019340 222 NLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVY 297 (342)
Q Consensus 222 ~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~ 297 (342)
++++|+.+|+++++. .++.+++++|.+|.. .+++++|+.+|+++++. .++.++.++|.++...|++++|+.+
T Consensus 252 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 327 (388)
T 1w3b_A 252 LIDLAIDTYRRAIELQPHFPDAYCNLANALKE----KGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRL 327 (388)
T ss_dssp CHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHH----HSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999986 578999999999965 33999999999999886 5688999999999999999999999
Q ss_pred HHHHHHcCcHHHHHHHHHHHhhcChhcHHHHHHHHHhhhcCCCC
Q 019340 298 LELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPSL 341 (342)
Q Consensus 298 ~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 341 (342)
|+++++..+........+...+...++.++|...+++..+..|.
T Consensus 328 ~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~ 371 (388)
T 1w3b_A 328 YRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT 371 (388)
T ss_dssp HHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTT
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 99999987665555555555566779999999999999888775
No 11
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.91 E-value=1.9e-23 Score=164.48 Aligned_cols=134 Identities=19% Similarity=0.147 Sum_probs=99.1
Q ss_pred HcCCCCcCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcC--CccCHHH
Q 019340 112 KHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQFNLGISYLQA--QPANAEE 189 (342)
Q Consensus 112 ~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~g--~~~~~~~ 189 (342)
..|.|+++|+++|+.+|+++++.+++.++ ||.+|..++.+++|+++|+++++.+++.++++||.+|..| ..+|+++
T Consensus 2 ~~G~g~~~d~~~A~~~~~~aa~~g~~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 2 VGGGTVKKDLKKAIQYYVKACELNEMFGC--LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp -CCSSHHHHHHHHHHHHHHHHHTTCTTHH--HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred CCCcCCccCHHHHHHHHHHHHcCCCHhhh--HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHH
Confidence 35678888888888888888888888877 8888888878888888888888777777777777777752 3667777
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Q 019340 190 AVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSL 247 (342)
Q Consensus 190 A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~~~~~a~~~lg~ 247 (342)
|+.||+++++.+++.++++||.+|..|.|+++|+++|+.||++|++.+++.++++|+.
T Consensus 80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~l~~ 137 (138)
T 1klx_A 80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSEDACGILNN 137 (138)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHC--
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHhh
Confidence 7777777777777777777777777776667777777777777777777777666654
No 12
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.91 E-value=7.9e-22 Score=176.08 Aligned_cols=261 Identities=12% Similarity=-0.004 Sum_probs=223.2
Q ss_pred cHHHHHHHHhhCCChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHH
Q 019340 65 PFDVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVD 142 (342)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~ 142 (342)
+...+..+...+..|++.+|...+....+..+. +..+++.++.++.. .+++++|+.+|+++++. .++.+++.
T Consensus 22 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~ 95 (330)
T 3hym_B 22 LDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPF--HASCLPVHIGTLVE----LNKANELFYLSHKLVDLYPSNPVSWFA 95 (330)
T ss_dssp CTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CTTTHHHHHHHHHH----HTCHHHHHHHHHHHHHHCTTSTHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--ChhhHHHHHHHHHH----hhhHHHHHHHHHHHHHhCcCCHHHHHH
Confidence 344566777778889999999999988887665 55667777888877 58999999999999986 47899999
Q ss_pred HHHHHhcCC-CHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCC
Q 019340 143 AGLMYWEMD-KKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLALCLHRGR 217 (342)
Q Consensus 143 lg~~~~~~~-~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~ 217 (342)
+|.++...| ++++|+.+|+++++. .++.+++.+|.++. ..+++++|+.+|+++++. ++..+++.+|.+|..
T Consensus 96 l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~--~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~-- 171 (330)
T 3hym_B 96 VGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFA--VESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGL-- 171 (330)
T ss_dssp HHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHH--HHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHH--
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHH--HccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHH--
Confidence 999999999 999999999999876 67899999999999 889999999999999874 568899999999988
Q ss_pred CCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc-----------CCHHHHHHHHHH
Q 019340 218 GVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC-----------GHGKAQLEHGLG 284 (342)
Q Consensus 218 ~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~-----------~~~~a~~~Lg~~ 284 (342)
.+++++|+.+|+++++. .++.+++.+|.+|.. .+++++|+.+|++++.. ..+.+++++|.+
T Consensus 172 --~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~ 245 (330)
T 3hym_B 172 --TNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQ----NGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHV 245 (330)
T ss_dssp --TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHH
T ss_pred --HhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----cccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHH
Confidence 77999999999999986 578899999999965 33999999999999873 336789999999
Q ss_pred hhhcCCHHHHHHHHHHHHHcCcHHHHHHHHHHHhhcChhcHHHHHHHHHhhhcCCCC
Q 019340 285 LFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPSL 341 (342)
Q Consensus 285 ~~~~~~~~~A~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 341 (342)
|...|++++|+.+|+++++..+.+......+...+...++.++|...+++..+..|.
T Consensus 246 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 302 (330)
T 3hym_B 246 CRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRD 302 (330)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSC
T ss_pred HHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCC
Confidence 999999999999999999987665555555555556678999999999999888775
No 13
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.90 E-value=1.1e-22 Score=160.17 Aligned_cols=129 Identities=20% Similarity=0.148 Sum_probs=117.2
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHH
Q 019340 151 DKKEAAISLYRQAAVLGDPAGQFNLGISYLQAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWY 230 (342)
Q Consensus 151 ~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~ 230 (342)
+|+++|+.+|+++++.+++.++ ||.+|. .....++|+.||+++++.+++.++++||.+|..|.|+.+|+++|+.||
T Consensus 9 ~d~~~A~~~~~~aa~~g~~~a~--lg~~y~--~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~ 84 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEMFGC--LSLVSN--SQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYY 84 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCTTHH--HHHHTC--TTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHcCCCHhhh--HHHHHH--cCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHHH
Confidence 5889999999999999999998 999988 556788899999999999999999999999999999999999999999
Q ss_pred HHHHHCCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHH
Q 019340 231 LRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHGL 283 (342)
Q Consensus 231 ~~A~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~ 283 (342)
++|++.+++.++++||.+|..|.|+++|+++|+.||++|++.+++.++.+|+.
T Consensus 85 ~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~l~~ 137 (138)
T 1klx_A 85 SKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSEDACGILNN 137 (138)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHC--
T ss_pred HHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999988875
No 14
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.89 E-value=1.1e-21 Score=166.48 Aligned_cols=191 Identities=14% Similarity=0.013 Sum_probs=157.9
Q ss_pred CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHH
Q 019340 99 REAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFN 174 (342)
Q Consensus 99 ~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~ 174 (342)
+++.+++.+|.++.. .+++++|+..|+++++. +++.+++.+|.++...|++++|+.+|+++++. +++.++++
T Consensus 3 ~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~ 78 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYA----LGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMV 78 (217)
T ss_dssp -CCHHHHHHHHHHHH----TTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 467889999999998 58999999999999987 58999999999999999999999999999854 78999999
Q ss_pred HHHHHHcCCc-----------cCHHHHHHHHHHHHH--cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC-CCHH
Q 019340 175 LGISYLQAQP-----------ANAEEAVKLLYQASI--AGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG-GYVR 240 (342)
Q Consensus 175 Lg~~~~~g~~-----------~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~-~~~~ 240 (342)
+|.++. .. +++++|+..|+++++ ++++.+++++|.+|.. .+++++|+.+|+++++. +++.
T Consensus 79 lg~~~~--~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~ 152 (217)
T 2pl2_A 79 LSEAYV--ALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYAL----LGERDKAEASLKQALALEDTPE 152 (217)
T ss_dssp HHHHHH--HHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHH--HhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH----cCChHHHHHHHHHHHhcccchH
Confidence 999999 78 999999999999887 5689999999999988 78999999999999876 6788
Q ss_pred HHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhhcCCHHHHHHHHHHHHH
Q 019340 241 AMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATR 303 (342)
Q Consensus 241 a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~ 303 (342)
+++++|.+|.. .+++++|+.+|+++++. +++.+++++|.++...|++++|+.+|+++-.
T Consensus 153 ~~~~la~~~~~----~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 213 (217)
T 2pl2_A 153 IRSALAELYLS----MGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEHH 213 (217)
T ss_dssp HHHHHHHHHHH----HTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC----------------
T ss_pred HHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence 99999999965 33999999999999876 6789999999999999999999999988753
No 15
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.88 E-value=4.2e-21 Score=174.77 Aligned_cols=249 Identities=11% Similarity=-0.002 Sum_probs=203.5
Q ss_pred HHHHHHHhhCCChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHH
Q 019340 67 DVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAG 144 (342)
Q Consensus 67 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg 144 (342)
..+..+...+..|++.+|...+....+..+. ++.+++.+|.+|.. .+++++|+.+|+++++. +++.+++.+|
T Consensus 67 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 140 (365)
T 4eqf_A 67 GAFEEGLKRLKEGDLPVTILFMEAAILQDPG--DAEAWQFLGITQAE----NENEQAAIVALQRCLELQPNNLKALMALA 140 (365)
T ss_dssp THHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC--CHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 3667777788899999999999998887655 79999999999999 58999999999999986 5789999999
Q ss_pred HHHhcCCCHHHHHHHHHHHHhCC--CHH----------HHHHHHHHHHcCCccCHHHHHHHHHHHHHc--C--CHHHHHH
Q 019340 145 LMYWEMDKKEAAISLYRQAAVLG--DPA----------GQFNLGISYLQAQPANAEEAVKLLYQASIA--G--HVRAQYQ 208 (342)
Q Consensus 145 ~~~~~~~~~~~A~~~~~~a~~~~--~~~----------a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~--~~~a~~~ 208 (342)
.+|...|++++|+.+|+++++.. ++. ....+|.++. ..+++++|+.+|+++++. . ++.++++
T Consensus 141 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 218 (365)
T 4eqf_A 141 VSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPV--DSSVLEGVKELYLEAAHQNGDMIDPDLQTG 218 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCHHHHCC---------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHH
T ss_pred HHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHh--hhhhHHHHHHHHHHHHHhCcCccCHHHHHH
Confidence 99999999999999999998753 222 3334588888 899999999999999884 4 7899999
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHH
Q 019340 209 LALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLG 284 (342)
Q Consensus 209 lg~~~~~g~~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~ 284 (342)
+|.+|.. .+++++|+.+|+++++. .++.+++++|.+|.. . +++++|+.+|+++++. +++.+++++|.+
T Consensus 219 l~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~---g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 290 (365)
T 4eqf_A 219 LGVLFHL----SGEFNRAIDAFNAALTVRPEDYSLWNRLGATLAN-G---DRSEEAVEAYTRALEIQPGFIRSRYNLGIS 290 (365)
T ss_dssp HHHHHHH----HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-T---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHH----CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-c---CCHHHHHHHHHHHHhcCCCchHHHHHHHHH
Confidence 9999987 77999999999999886 578999999999976 3 3999999999999886 568999999999
Q ss_pred hhhcCCHHHHHHHHHHHHHcCc--------------HHHHHHHHHHHhhcChhcHHHHHHHHH
Q 019340 285 LFTEGEMMKAVVYLELATRAGE--------------TAADHVKNVILQQLSATSRDRAMLVVD 333 (342)
Q Consensus 285 ~~~~~~~~~A~~~~~~a~~~~~--------------~~a~~~~~~~~~~~~~~~~~~a~~~~~ 333 (342)
|...|++++|+.+|+++++..+ ......++.+...+ ++.+.+..+.+
T Consensus 291 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~a~~~~~ 351 (365)
T 4eqf_A 291 CINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLM--DQPELFQAANL 351 (365)
T ss_dssp HHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHH--TCHHHHHHHHT
T ss_pred HHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHc--CcHHHHHHHHH
Confidence 9999999999999999998752 24445555555444 55555555544
No 16
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.88 E-value=7.3e-20 Score=164.90 Aligned_cols=251 Identities=12% Similarity=-0.009 Sum_probs=138.1
Q ss_pred hCCChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCCC-----HHHHHHH------
Q 019340 75 SFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGS-----TLAMVDA------ 143 (342)
Q Consensus 75 ~~~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~-----~~a~~~l------ 143 (342)
.+..|++.+|...+....+..+. +..+++.+|.+|.. .+++++|+.+|+++++... +.++..+
T Consensus 47 ~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 120 (359)
T 3ieg_A 47 FLAMGKSKAALPDLTKVIALKMD--FTAARLQRGHLLLK----QGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEM 120 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHH----HTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhCCC--cchHHHHHHHHHHH----cCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHH
Confidence 33444455554444444444322 44445555555544 3455555555555554322 2222223
Q ss_pred ------HHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHH
Q 019340 144 ------GLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLALCL 213 (342)
Q Consensus 144 ------g~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~ 213 (342)
|.++...|++++|+.+|+++++. +++.++..+|.++. ..+++++|+.+|+++++. .++.+++.+|.+|
T Consensus 121 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 198 (359)
T 3ieg_A 121 QRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFI--KEGEPRKAISDLKAASKLKSDNTEAFYKISTLY 198 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHH--HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 34455555555555555554432 44555555555555 555555666666555543 3555566666665
Q ss_pred hcCCCCCCCHHHHHHHHHHHHHC--CCHHHHH------------HHHHHHHcCCCCcccHHHHHHHHHHHHHcC--CH--
Q 019340 214 HRGRGVDFNLQEAARWYLRAAEG--GYVRAMY------------NTSLCYSFGEGLPLSHRQARKWMKRAADCG--HG-- 275 (342)
Q Consensus 214 ~~g~~~~~~~~~A~~~~~~A~~~--~~~~a~~------------~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~-- 275 (342)
.. .+++++|+.+|+++++. .+..++. .+|.++.. .+++++|+.+|++++... ++
T Consensus 199 ~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~ 270 (359)
T 3ieg_A 199 YQ----LGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIR----DGRYTDATSKYESVMKTEPSVAEY 270 (359)
T ss_dssp HH----HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCCSSHHH
T ss_pred HH----cCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCchHH
Confidence 54 44566666666666553 2333222 22444533 226677777777766642 22
Q ss_pred --HHHHHHHHHhhhcCCHHHHHHHHHHHHHcCcHHHHHHHHHHHhhcChhcHHHHHHHHHhhhcCCCC
Q 019340 276 --KAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPSL 341 (342)
Q Consensus 276 --~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 341 (342)
.++..+|.++...|++++|+.+|+++++..+.+..........+...++.++|...+++..+..|.
T Consensus 271 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~ 338 (359)
T 3ieg_A 271 TVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNEN 338 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 335567888888888888888888888776544444444444445567888888888887777665
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.87 E-value=3.9e-20 Score=165.08 Aligned_cols=231 Identities=15% Similarity=0.116 Sum_probs=201.4
Q ss_pred HHHhhCCChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcC-CHHHHHHHHHHHHhCC--CHHHHHHHHHHH
Q 019340 71 KIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRK-NLDKALDSFLKGAARG--STLAMVDAGLMY 147 (342)
Q Consensus 71 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~-~~~~A~~~~~~A~~~~--~~~a~~~lg~~~ 147 (342)
.+...+..+++.+|...+....+..+. ++.+++.+|.++.. .+ ++++|+.+|++++... ++.+++.+|.++
T Consensus 62 ~~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~----~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 135 (330)
T 3hym_B 62 HIGTLVELNKANELFYLSHKLVDLYPS--NPVSWFAVGCYYLM----VGHKNEHARRYLSKATTLEKTYGPAWIAYGHSF 135 (330)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTT--STHHHHHHHHHHHH----SCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhCcC--CHHHHHHHHHHHHH----hhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 344456778999999988888887554 78899999999998 47 9999999999999864 788999999999
Q ss_pred hcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCCCCH
Q 019340 148 WEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNL 223 (342)
Q Consensus 148 ~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~ 223 (342)
...|++++|+.+|+++++. ++..+++.+|.+|. ..+++++|+.+|+++++. .++.+++.+|.+|.. .+++
T Consensus 136 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~--~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~----~~~~ 209 (330)
T 3hym_B 136 AVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYG--LTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQ----NGEW 209 (330)
T ss_dssp HHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH----TTCH
T ss_pred HHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHH--HHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----cccH
Confidence 9999999999999999865 66899999999999 889999999999999875 589999999999998 7899
Q ss_pred HHHHHHHHHHHH-----------CCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhhcCC
Q 019340 224 QEAARWYLRAAE-----------GGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGE 290 (342)
Q Consensus 224 ~~A~~~~~~A~~-----------~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~ 290 (342)
++|+.+|+++++ ...+.+++++|.+|.. . +++++|+.+|+++++. .+..++.++|.+|...|+
T Consensus 210 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~-~---g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~ 285 (330)
T 3hym_B 210 KTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRK-L---KKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGN 285 (330)
T ss_dssp HHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHH-T---TCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHH-h---cCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhcc
Confidence 999999999987 3456799999999965 3 3999999999999886 568899999999999999
Q ss_pred HHHHHHHHHHHHHcCc--HHHHHHHHHHH
Q 019340 291 MMKAVVYLELATRAGE--TAADHVKNVIL 317 (342)
Q Consensus 291 ~~~A~~~~~~a~~~~~--~~a~~~~~~~~ 317 (342)
+++|..+|+++++..+ ..+...++.++
T Consensus 286 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 286 FENAVDYFHTALGLRRDDTFSVTMLGHCI 314 (330)
T ss_dssp HHHHHHHHHTTTTTCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCchHHHHHHHHHH
Confidence 9999999999998864 55555555544
No 18
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.87 E-value=2.1e-20 Score=158.43 Aligned_cols=192 Identities=14% Similarity=0.082 Sum_probs=159.0
Q ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHH--cCCHHHHHHHH
Q 019340 135 GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASI--AGHVRAQYQLA 210 (342)
Q Consensus 135 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg 210 (342)
.++.+++.+|.++...|++++|+..|+++++. +++.+++++|.++. ..+++++|+.+|+++++ ++++.+++++|
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~--~~g~~~~A~~~~~~al~~~P~~~~a~~~lg 80 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQL--KLGLVNPALENGKTLVARTPRYLGGYMVLS 80 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 46678999999999999999999999999865 78999999999999 89999999999999887 56899999999
Q ss_pred HHHhcCCCCC-----------CCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc-CCHH
Q 019340 211 LCLHRGRGVD-----------FNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC-GHGK 276 (342)
Q Consensus 211 ~~~~~g~~~~-----------~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~-~~~~ 276 (342)
.++.. . +++++|+..|+++++. +++.+++++|.+|.. .| ++++|+.+|+++++. +++.
T Consensus 81 ~~~~~----~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~-~g---~~~~A~~~~~~al~~~~~~~ 152 (217)
T 2pl2_A 81 EAYVA----LYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYAL-LG---ERDKAEASLKQALALEDTPE 152 (217)
T ss_dssp HHHHH----HHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHH----hhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-cC---ChHHHHHHHHHHHhcccchH
Confidence 99987 6 7899999999999885 689999999999965 33 999999999999876 6789
Q ss_pred HHHHHHHHhhhcCCHHHHHHHHHHHHHcCcHHHHHHHHHHHhhcChhcHHHHHHHHHhhh
Q 019340 277 AQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWR 336 (342)
Q Consensus 277 a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~ 336 (342)
+++++|.+|...|++++|+.+|+++++..|.+..............++.++|...+++.-
T Consensus 153 ~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 153 IRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 999999999999999999999999999987666666666677788899999988777653
No 19
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.86 E-value=7e-20 Score=163.18 Aligned_cols=253 Identities=13% Similarity=-0.026 Sum_probs=209.6
Q ss_pred HHHHHHhhCCChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHH
Q 019340 68 VLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGL 145 (342)
Q Consensus 68 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~ 145 (342)
.+..+...+..+++.+|...+....+..+. ++.+++.+|.+|.. .+++++|+.+|+++++. .++.++..+|.
T Consensus 24 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 97 (327)
T 3cv0_A 24 PMEEGLSMLKLANLAEAALAFEAVCQAAPE--REEAWRSLGLTQAE----NEKDGLAIIALNHARMLDPKDIAVHAALAV 97 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCcCCHHHHHHHHH
Confidence 456677778899999999999888887654 88999999999998 58999999999999986 48899999999
Q ss_pred HHhcCCCHHHHHHHHHHHHhC--CCHHHHHHH--------------HH-HHHcCCccCHHHHHHHHHHHHHc--CCHHHH
Q 019340 146 MYWEMDKKEAAISLYRQAAVL--GDPAGQFNL--------------GI-SYLQAQPANAEEAVKLLYQASIA--GHVRAQ 206 (342)
Q Consensus 146 ~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~L--------------g~-~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~ 206 (342)
+|...|++++|+.+|+++++. .+...+..+ +. ++. ..+++++|+.+|+++++. .++.++
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~A~~~~~~~~~~~~~~~~~~ 175 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFA--APNEYRECRTLLHAALEMNPNDAQLH 175 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTT--SHHHHHHHHHHHHHHHHHSTTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHH--HcccHHHHHHHHHHHHhhCCCCHHHH
Confidence 999999999999999999876 444444444 44 455 788999999999999875 579999
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHH
Q 019340 207 YQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHG 282 (342)
Q Consensus 207 ~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg 282 (342)
+.+|.+|.. .+++++|+.+|+++++. .++.++..+|.+|.. .| ++++|+.+|++++.. .+..+++.+|
T Consensus 176 ~~la~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~---~~~~A~~~~~~a~~~~~~~~~~~~~l~ 247 (327)
T 3cv0_A 176 ASLGVLYNL----SNNYDSAAANLRRAVELRPDDAQLWNKLGATLAN-GN---RPQEALDAYNRALDINPGYVRVMYNMA 247 (327)
T ss_dssp HHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHH----hccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-cC---CHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 999999987 77999999999999876 578999999999976 33 999999999999886 5688999999
Q ss_pred HHhhhcCCHHHHHHHHHHHHHcCcH------------HHHHHHHHHHhhcChhcHHHHHHHHHhhh
Q 019340 283 LGLFTEGEMMKAVVYLELATRAGET------------AADHVKNVILQQLSATSRDRAMLVVDSWR 336 (342)
Q Consensus 283 ~~~~~~~~~~~A~~~~~~a~~~~~~------------~a~~~~~~~~~~~~~~~~~~a~~~~~~~~ 336 (342)
.+|...|++++|..+|+++++..+. ...........+...++.++|....++..
T Consensus 248 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 248 VSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 9999999999999999999987655 44444444444455688888888776543
No 20
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.86 E-value=2.2e-19 Score=167.64 Aligned_cols=254 Identities=11% Similarity=-0.030 Sum_probs=133.1
Q ss_pred HHhhCCChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhc
Q 019340 72 IAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWE 149 (342)
Q Consensus 72 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~ 149 (342)
+...+..|++.+|...+....+..+. ++.+++.+|.+|.. .+++++|+.+|+++++. +++.+++.+|.+|..
T Consensus 33 ~~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 106 (450)
T 2y4t_A 33 GKKLLAAGQLADALSQFHAAVDGDPD--NYIAYYRRATVFLA----MGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLK 106 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCc--cHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 33344455555555555544444322 45555555555555 34555555555555543 244555555555555
Q ss_pred CCCHHHHHHHHHHHHhC---------------------------------------------------CCHHHHHHHHHH
Q 019340 150 MDKKEAAISLYRQAAVL---------------------------------------------------GDPAGQFNLGIS 178 (342)
Q Consensus 150 ~~~~~~A~~~~~~a~~~---------------------------------------------------~~~~a~~~Lg~~ 178 (342)
.|++++|+.+|+++++. .++.+++.+|.+
T Consensus 107 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 186 (450)
T 2y4t_A 107 QGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAEC 186 (450)
T ss_dssp TTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 55555555555555443 344444455555
Q ss_pred HHcCCccCHHHHHHHHHHHHH--cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHH---------
Q 019340 179 YLQAQPANAEEAVKLLYQASI--AGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNT--------- 245 (342)
Q Consensus 179 ~~~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~--~~~~a~~~l--------- 245 (342)
|. ..+++++|+.+|+++++ +.++.+++.+|.+|.. .+++++|+.+|++++.. ++...+..+
T Consensus 187 ~~--~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 260 (450)
T 2y4t_A 187 FI--KEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQ----LGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKL 260 (450)
T ss_dssp HH--HTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HH--HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH
Confidence 54 44555555555555443 2445555555555554 44555555555555543 234443333
Q ss_pred ---HHHHHcCCCCcccHHHHHHHHHHHHHcC--C----HHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCcHHHHHHHHHH
Q 019340 246 ---SLCYSFGEGLPLSHRQARKWMKRAADCG--H----GKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVI 316 (342)
Q Consensus 246 ---g~~y~~g~g~~~~~~~A~~~~~~a~~~~--~----~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~~~~~ 316 (342)
|.++.. .+++++|+.+|+++++.. + ...+..+|.++...|++++|+.+|+++++..+.+........
T Consensus 261 ~~~~~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~ 336 (450)
T 2y4t_A 261 IESAEELIR----DGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRA 336 (450)
T ss_dssp HHHHHHHHH----HTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHH----cCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 444433 225666666666665542 2 235566666666667777777777766665543333333333
Q ss_pred HhhcChhcHHHHHHHHHhhhcCCCC
Q 019340 317 LQQLSATSRDRAMLVVDSWRAMPSL 341 (342)
Q Consensus 317 ~~~~~~~~~~~a~~~~~~~~~~~~~ 341 (342)
..+...++.++|...+++..+..|.
T Consensus 337 ~~~~~~~~~~~A~~~~~~al~~~p~ 361 (450)
T 2y4t_A 337 EAYLIEEMYDEAIQDYETAQEHNEN 361 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTSSS
T ss_pred HHHHHhcCHHHHHHHHHHHHHhCcc
Confidence 3334456666677766666666554
No 21
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.86 E-value=2.3e-19 Score=167.56 Aligned_cols=236 Identities=16% Similarity=0.083 Sum_probs=183.6
Q ss_pred HHHHHHHHhhCCChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC-----------
Q 019340 66 FDVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR----------- 134 (342)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~----------- 134 (342)
......+...+..|++.+|...+....+..+. ++.+++.+|.+|.. .+++++|+.+|+++++.
T Consensus 61 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 134 (450)
T 2y4t_A 61 IAYYRRATVFLAMGKSKAALPDLTKVIQLKMD--FTAARLQRGHLLLK----QGKLDEAEDDFKKVLKSNPSENEEKEAQ 134 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHH----TTCHHHHHHHHHHHHTSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC--cHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCChhhHHHH
Confidence 33444444555667777777777666665443 56667777777666 35666666666655443
Q ss_pred ----------------------------------------CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHH
Q 019340 135 ----------------------------------------GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQ 172 (342)
Q Consensus 135 ----------------------------------------~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~ 172 (342)
.++.+++.+|.+|...|++++|+.+|+++++. +++.++
T Consensus 135 ~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 214 (450)
T 2y4t_A 135 SQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAF 214 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 24566778888888899999999999998754 789999
Q ss_pred HHHHHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHH------------HHHHhcCCCCCCCHHHHHHHHHHHHHCC-
Q 019340 173 FNLGISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQL------------ALCLHRGRGVDFNLQEAARWYLRAAEGG- 237 (342)
Q Consensus 173 ~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~l------------g~~~~~g~~~~~~~~~A~~~~~~A~~~~- 237 (342)
+.+|.+|. ..+++++|+.+|++++.. +++..+..+ |.++.. .+++++|+.+|+++++..
T Consensus 215 ~~l~~~~~--~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~~A~~~~~~~l~~~p 288 (450)
T 2y4t_A 215 YKISTLYY--QLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIR----DGRYTDATSKYESVMKTEP 288 (450)
T ss_dssp HHHHHHHH--HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHH--HcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCC
Confidence 99999999 889999999999999874 577777666 888888 789999999999998863
Q ss_pred -C----HHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCc--HH
Q 019340 238 -Y----VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGE--TA 308 (342)
Q Consensus 238 -~----~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~--~~ 308 (342)
+ ...+..+|.++.. .| ++++|+.++++++.. +++.+++.+|.++...|++++|+.+|+++++..+ ..
T Consensus 289 ~~~~~~~~~~~~l~~~~~~-~g---~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 364 (450)
T 2y4t_A 289 SIAEYTVRSKERICHCFSK-DE---KPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQ 364 (450)
T ss_dssp SSHHHHHHHHHHHHHHHHT-TT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHH
T ss_pred cchHHHHHHHHHHHHHHHH-CC---CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHH
Confidence 3 3478899999965 33 999999999999875 5689999999999999999999999999999865 44
Q ss_pred HHHHHHHHH
Q 019340 309 ADHVKNVIL 317 (342)
Q Consensus 309 a~~~~~~~~ 317 (342)
+...++.+.
T Consensus 365 ~~~~l~~~~ 373 (450)
T 2y4t_A 365 IREGLEKAQ 373 (450)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 554544443
No 22
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.86 E-value=1.6e-20 Score=172.66 Aligned_cols=228 Identities=6% Similarity=-0.074 Sum_probs=183.8
Q ss_pred CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhC--CCHHHHHH
Q 019340 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDK-KEAAISLYRQAAVL--GDPAGQFN 174 (342)
Q Consensus 100 ~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~-~~~A~~~~~~a~~~--~~~~a~~~ 174 (342)
++.+++.+|.++.. .+++++|+..|++++.. ++..+++++|.++...|+ +++|+.+|++++.. +++.++++
T Consensus 96 ~~~a~~~lg~~~~~----~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~ 171 (382)
T 2h6f_A 96 FRDVYDYFRAVLQR----DERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHH 171 (382)
T ss_dssp HHHHHHHHHHHHHH----TCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred hHHHHHHHHHHHHH----CCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 46778888998888 48899999999999886 488999999999999996 99999999998865 78999999
Q ss_pred HHHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH
Q 019340 175 LGISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYS 250 (342)
Q Consensus 175 Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~ 250 (342)
+|.++. ..+++++|+.+|+++++. .++.+++++|.++.. .+++++|+.+|+++++. .+..+++++|.+|.
T Consensus 172 ~g~~~~--~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~----~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~ 245 (382)
T 2h6f_A 172 RRVLVE--WLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQE----FKLWDNELQYVDQLLKEDVRNNSVWNQRYFVIS 245 (382)
T ss_dssp HHHHHH--HHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHH--HccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 999999 888999999999998874 589999999999987 66788999999999886 57899999999997
Q ss_pred cCCCCcccHHHH-----HHHHHHHHHc--CCHHHHHHHHHHhhhcC--CHHHHHHHHHHHHHcC--cHHHHHHHHHHHhh
Q 019340 251 FGEGLPLSHRQA-----RKWMKRAADC--GHGKAQLEHGLGLFTEG--EMMKAVVYLELATRAG--ETAADHVKNVILQQ 319 (342)
Q Consensus 251 ~g~g~~~~~~~A-----~~~~~~a~~~--~~~~a~~~Lg~~~~~~~--~~~~A~~~~~~a~~~~--~~~a~~~~~~~~~~ 319 (342)
.-.| ..++| +.+|++++.. ++..+++++|.++...| ++++|+.+++++ +.+ ...+...++.++..
T Consensus 246 ~l~~---~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~ 321 (382)
T 2h6f_A 246 NTTG---YNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYED 321 (382)
T ss_dssp HTTC---SCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHH
T ss_pred HhcC---cchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHH
Confidence 6333 32444 6899999876 66889999999998887 689999999887 554 45555566655554
Q ss_pred cC------hh-cHHHHHHHHHhh-hcCCCC
Q 019340 320 LS------AT-SRDRAMLVVDSW-RAMPSL 341 (342)
Q Consensus 320 ~~------~~-~~~~a~~~~~~~-~~~~~~ 341 (342)
+. .+ ..++|+.+++++ .+..|.
T Consensus 322 ~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~ 351 (382)
T 2h6f_A 322 MLENQCDNKEDILNKALELCEILAKEKDTI 351 (382)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHHHHHTTCGG
T ss_pred HhcccccchHHHHHHHHHHHHHHHHHhCch
Confidence 41 12 358888888888 676664
No 23
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.86 E-value=1.2e-20 Score=171.74 Aligned_cols=227 Identities=13% Similarity=0.025 Sum_probs=187.3
Q ss_pred CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHH
Q 019340 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNL 175 (342)
Q Consensus 100 ~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~L 175 (342)
++..++.+|.++.. .+++++|+.+|+++++. +++.+++.+|.+|...|++++|+.+|+++++. .++.+++.+
T Consensus 64 ~~~~~~~~~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 139 (365)
T 4eqf_A 64 DWPGAFEEGLKRLK----EGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMAL 139 (365)
T ss_dssp TCTTHHHHHHHHHH----HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred chhHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 34568999999998 68999999999999985 58999999999999999999999999999865 789999999
Q ss_pred HHHHHcCCccCHHHHHHHHHHHHHcC--CH----------HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--C--CH
Q 019340 176 GISYLQAQPANAEEAVKLLYQASIAG--HV----------RAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--G--YV 239 (342)
Q Consensus 176 g~~~~~g~~~~~~~A~~~~~~a~~~~--~~----------~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~--~--~~ 239 (342)
|.+|. ..+++++|+.+|+++++.. ++ ..+..+|.++.. .+++++|+.+|++++.. . ++
T Consensus 140 ~~~~~--~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~ 213 (365)
T 4eqf_A 140 AVSYT--NTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVD----SSVLEGVKELYLEAAHQNGDMIDP 213 (365)
T ss_dssp HHHHH--HTTCHHHHHHHHHHHHHHCHHHHCC-------------------C----CHHHHHHHHHHHHHHHHSCSSCCH
T ss_pred HHHHH--ccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhh----hhhHHHHHHHHHHHHHhCcCccCH
Confidence 99999 8999999999999998753 22 233455888876 77999999999999986 3 78
Q ss_pred HHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCcHHHHHHHHHHH
Q 019340 240 RAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVIL 317 (342)
Q Consensus 240 ~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~~~~~~ 317 (342)
.+++++|.+|.. .+++++|+.+|+++++. +++.+++++|.+|...|++++|+.+|+++++..+.++.....+..
T Consensus 214 ~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 289 (365)
T 4eqf_A 214 DLQTGLGVLFHL----SGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGI 289 (365)
T ss_dssp HHHHHHHHHHHH----HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHH
Confidence 999999999965 34999999999999886 568999999999999999999999999999987655555555555
Q ss_pred hhcChhcHHHHHHHHHhhhcCCC
Q 019340 318 QQLSATSRDRAMLVVDSWRAMPS 340 (342)
Q Consensus 318 ~~~~~~~~~~a~~~~~~~~~~~~ 340 (342)
.+...++.++|...+++..+..|
T Consensus 290 ~~~~~g~~~~A~~~~~~al~~~~ 312 (365)
T 4eqf_A 290 SCINLGAYREAVSNFLTALSLQR 312 (365)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCc
Confidence 55666889999998888765543
No 24
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.86 E-value=3.5e-20 Score=161.33 Aligned_cols=230 Identities=10% Similarity=0.006 Sum_probs=195.2
Q ss_pred HHHHHHHhhCCChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC-----CHHHHH
Q 019340 67 DVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG-----STLAMV 141 (342)
Q Consensus 67 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~-----~~~a~~ 141 (342)
..+..+...+..|++.+|...+....+..+. ++.+++.+|.+|.. .+++++|+.+|+++++.. ...+++
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~--~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 78 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYN--SPYIYNRRAVCYYE----LAKYDLAQKDIETYFSKVNATKAKSADFE 78 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCC--CSTTHHHHHHHHHH----TTCHHHHHHHHHHHHTTSCTTTCCHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHH----HhhHHHHHHHHHHHHhccCchhHHHHHHH
Confidence 3456677778999999999999888877655 66788999999998 589999999999999842 255689
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHH--cCCHHHHHHHH-HHHhcC
Q 019340 142 DAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASI--AGHVRAQYQLA-LCLHRG 216 (342)
Q Consensus 142 ~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg-~~~~~g 216 (342)
.+|.+|...|++++|+.+|+++++. .++.++..+|.+|. ..+++++|+.+|+++++ +.++.+++++| .+|..+
T Consensus 79 ~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~--~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~ 156 (272)
T 3u4t_A 79 YYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFY--NKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNK 156 (272)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHH--HTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHH--HccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHH
Confidence 9999999999999999999999865 78899999999999 89999999999999886 46899999999 777753
Q ss_pred CCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc----CC------HHHHHHHHHH
Q 019340 217 RGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC----GH------GKAQLEHGLG 284 (342)
Q Consensus 217 ~~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~~------~~a~~~Lg~~ 284 (342)
++++|+.+|+++++. .+..+++.+|.++..- |...++++|+.+|+++++. .+ ..++..||.+
T Consensus 157 -----~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 230 (272)
T 3u4t_A 157 -----EYVKADSSFVKVLELKPNIYIGYLWRARANAAQ-DPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYY 230 (272)
T ss_dssp -----CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH-STTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHhCccchHHHHHHHHHHHHc-CcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHH
Confidence 899999999999986 5788999999998642 2122388899999999875 22 2678899999
Q ss_pred hhhcCCHHHHHHHHHHHHHcCcHHHH
Q 019340 285 LFTEGEMMKAVVYLELATRAGETAAD 310 (342)
Q Consensus 285 ~~~~~~~~~A~~~~~~a~~~~~~~a~ 310 (342)
|...|++++|+.+|+++++..|.+..
T Consensus 231 ~~~~~~~~~A~~~~~~al~~~p~~~~ 256 (272)
T 3u4t_A 231 YTINRDKVKADAAWKNILALDPTNKK 256 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHcCCHHHHHHHHHHHHhcCccHHH
Confidence 99999999999999999998654443
No 25
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.86 E-value=7.7e-20 Score=166.08 Aligned_cols=248 Identities=12% Similarity=0.001 Sum_probs=206.1
Q ss_pred HHHHHHHhhCCChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHH
Q 019340 67 DVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAG 144 (342)
Q Consensus 67 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg 144 (342)
..+..+...+..|++.+|...+....+..+. ++.+++.+|.+|.. .+++++|+.+|+++++. +++.+++.+|
T Consensus 66 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~l~ 139 (368)
T 1fch_A 66 QPFEEGLRRLQEGDLPNAVLLFEAAVQQDPK--HMEAWQYLGTTQAE----NEQELLAISALRRCLELKPDNQTALMALA 139 (368)
T ss_dssp SHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT--CHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHH----CcCHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 3456666778899999999988888876544 88999999999999 58999999999999986 4899999999
Q ss_pred HHHhcCCCHHHHHHHHHHHHhC--CCHHHHH----------------HHHHHHHcCCccCHHHHHHHHHHHHHc--C--C
Q 019340 145 LMYWEMDKKEAAISLYRQAAVL--GDPAGQF----------------NLGISYLQAQPANAEEAVKLLYQASIA--G--H 202 (342)
Q Consensus 145 ~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~----------------~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~--~ 202 (342)
.+|...|++++|+.+|++++.. .+..++. .+|.++ ..+++++|+.+|+++++. . +
T Consensus 140 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~A~~~~~~a~~~~p~~~~ 216 (368)
T 1fch_A 140 VSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL---SDSLFLEVKELFLAAVRLDPTSID 216 (368)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH---HHHHHHHHHHHHHHHHHHSTTSCC
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh---hcccHHHHHHHHHHHHHhCcCccc
Confidence 9999999999999999999976 3333332 455555 468999999999999874 4 6
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHH
Q 019340 203 VRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQ 278 (342)
Q Consensus 203 ~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~ 278 (342)
+.+++.+|.+|.. .+++++|+.+|++++.. .++.+++++|.+|.. .| ++++|+.+|++++.. +++.++
T Consensus 217 ~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~-~g---~~~~A~~~~~~al~~~~~~~~~~ 288 (368)
T 1fch_A 217 PDVQCGLGVLFNL----SGEYDKAVDCFTAALSVRPNDYLLWNKLGATLAN-GN---QSEEAVAAYRRALELQPGYIRSR 288 (368)
T ss_dssp HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH-cC---CHHHHHHHHHHHHHhCCCcHHHH
Confidence 8999999999998 77999999999999875 578999999999965 33 999999999999886 568899
Q ss_pred HHHHHHhhhcCCHHHHHHHHHHHHHcCc-------------HHHHHHHHHHHhhcChhcHHHHHHHHH
Q 019340 279 LEHGLGLFTEGEMMKAVVYLELATRAGE-------------TAADHVKNVILQQLSATSRDRAMLVVD 333 (342)
Q Consensus 279 ~~Lg~~~~~~~~~~~A~~~~~~a~~~~~-------------~~a~~~~~~~~~~~~~~~~~~a~~~~~ 333 (342)
+++|.+|...|++++|+.+|+++++..+ ..+...++.++..+ ++.++|..+.+
T Consensus 289 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~ 354 (368)
T 1fch_A 289 YNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSML--GQSDAYGAADA 354 (368)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHH--TCGGGHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHh--CChHhHHHhHH
Confidence 9999999999999999999999998754 45566666555544 66666666554
No 26
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.85 E-value=3.3e-19 Score=172.51 Aligned_cols=260 Identities=10% Similarity=-0.025 Sum_probs=215.8
Q ss_pred HHHHHHHHhhCCChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHH
Q 019340 66 FDVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDA 143 (342)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~l 143 (342)
......+...+..|++.+|...+....+..+. +..++..++.+|.. .+++++|+..|++++.. +++.+++.+
T Consensus 306 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~l 379 (597)
T 2xpi_A 306 DLLLCKADTLFVRSRFIDVLAITTKILEIDPY--NLDVYPLHLASLHE----SGEKNKLYLISNDLVDRHPEKAVTWLAV 379 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CCTTHHHHHHHHHH----HTCHHHHHHHHHHHHHHCTTSHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcc--cHHHHHHHHHHHHH----hCCHHHHHHHHHHHHhhCcccHHHHHHH
Confidence 33444555566778888888888777766554 55667777888877 57888999999888764 478899999
Q ss_pred HHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCC
Q 019340 144 GLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLALCLHRGRGV 219 (342)
Q Consensus 144 g~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~ 219 (342)
|.+|...|++++|+.+|+++++. .++.++..+|.+|. ..+++++|+.+|+++++. .++.+++.+|.+|..
T Consensus 380 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 453 (597)
T 2xpi_A 380 GIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFA--IEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQ---- 453 (597)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH--HHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHH----
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH----
Confidence 99999999999999999998764 77899999999999 889999999999998875 478899999999987
Q ss_pred CCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc------CC---HHHHHHHHHHhhhc
Q 019340 220 DFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC------GH---GKAQLEHGLGLFTE 288 (342)
Q Consensus 220 ~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~------~~---~~a~~~Lg~~~~~~ 288 (342)
.+++++|+.+|+++++. .++.++..+|.+|.. . +++++|+.+|+++++. .+ ..++..+|.+|...
T Consensus 454 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~---g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~ 529 (597)
T 2xpi_A 454 LGNILLANEYLQSSYALFQYDPLLLNELGVVAFN-K---SDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKL 529 (597)
T ss_dssp HTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-T---TCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH-h---CCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHh
Confidence 77999999999999875 578899999999975 2 3999999999999875 22 67889999999999
Q ss_pred CCHHHHHHHHHHHHHcCcHHHHHHHHHHHhhcChhcHHHHHHHHHhhhcCCCC
Q 019340 289 GEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPSL 341 (342)
Q Consensus 289 ~~~~~A~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 341 (342)
|++++|..+|+++++.++.+......+...+...++.++|...+++..+..|.
T Consensus 530 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 582 (597)
T 2xpi_A 530 KMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPN 582 (597)
T ss_dssp TCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Confidence 99999999999999987655555555555556679999999999999887775
No 27
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.85 E-value=6.9e-20 Score=150.47 Aligned_cols=169 Identities=21% Similarity=0.173 Sum_probs=133.0
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHH
Q 019340 136 STLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLAL 211 (342)
Q Consensus 136 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~ 211 (342)
++.+++++|.+|...|++++|+.+|+++++. +++.+++.+|.+|. ..+++++|+.++.+++.. .++.++..+|.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYM--DIGLPNDAIESLKKFVVLDTTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH--HCCCHHHHHHHHHHHHhcCchhHHHHHHHHH
Confidence 4667778888888888888888888887754 67788888888887 777888888888887663 46777888888
Q ss_pred HHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhh
Q 019340 212 CLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFT 287 (342)
Q Consensus 212 ~~~~g~~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~ 287 (342)
++.. .+++++|...+.+++.. .+..++..+|.+|.. .+++++|+.+|+++++. .++.+++++|.+|..
T Consensus 82 ~~~~----~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~ 153 (184)
T 3vtx_A 82 ANFM----IDEKQAAIDALQRAIALNTVYADAYYKLGLVYDS----MGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEG 153 (184)
T ss_dssp HHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHH----cCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH----hCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHH
Confidence 8776 66788888888887765 567788888888855 23888888888888875 568888999999999
Q ss_pred cCCHHHHHHHHHHHHHcCcHHHHHHHH
Q 019340 288 EGEMMKAVVYLELATRAGETAADHVKN 314 (342)
Q Consensus 288 ~~~~~~A~~~~~~a~~~~~~~a~~~~~ 314 (342)
.|++++|+.+|++|++.+|.++.++++
T Consensus 154 ~g~~~~A~~~~~~al~~~p~~a~~~la 180 (184)
T 3vtx_A 154 KGLRDEAVKYFKKALEKEEKKAKYELA 180 (184)
T ss_dssp TTCHHHHHHHHHHHHHTTHHHHHHCSC
T ss_pred CCCHHHHHHHHHHHHhCCccCHHHHHH
Confidence 999999999999999998887765543
No 28
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.85 E-value=6.5e-20 Score=159.61 Aligned_cols=225 Identities=13% Similarity=0.030 Sum_probs=192.3
Q ss_pred CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCC-----CHHHH
Q 019340 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVLG-----DPAGQ 172 (342)
Q Consensus 100 ~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~-----~~~a~ 172 (342)
++..++.+|.++.. .+++++|+.+|+++++.. ++.+++.+|.+|...|++++|+.+|+++++.. ...++
T Consensus 2 n~~~~~~~a~~~~~----~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 77 (272)
T 3u4t_A 2 NDDVEFRYADFLFK----NNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADF 77 (272)
T ss_dssp ---CHHHHHHHHHT----TTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHH
T ss_pred cHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHH
Confidence 34567889999998 589999999999999974 77799999999999999999999999999842 25569
Q ss_pred HHHHHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHH-H
Q 019340 173 FNLGISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTS-L 247 (342)
Q Consensus 173 ~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg-~ 247 (342)
+.+|.+|. ..+++++|+.+|+++++. .++.++..+|.+|.. .+++++|+.+|+++++. .++.+++++| .
T Consensus 78 ~~lg~~~~--~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~ 151 (272)
T 3u4t_A 78 EYYGKILM--KKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYN----KGNFPLAIQYMEKQIRPTTTDPKVFYELGQA 151 (272)
T ss_dssp HHHHHHHH--HTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHH----TTCHHHHHHHHGGGCCSSCCCHHHHHHHHHH
T ss_pred HHHHHHHH--HcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH----ccCHHHHHHHHHHHhhcCCCcHHHHHHHHHH
Confidence 99999999 899999999999999884 688999999999998 78999999999999876 5889999999 8
Q ss_pred HHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhhcCC---HHHHHHHHHHHHHcC---cH-------HHHHH
Q 019340 248 CYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGE---MMKAVVYLELATRAG---ET-------AADHV 312 (342)
Q Consensus 248 ~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~---~~~A~~~~~~a~~~~---~~-------~a~~~ 312 (342)
+|..+ ++++|+.+|+++++. .+..+++.+|.++...++ +++|+.+|+++++.. +. .+...
T Consensus 152 ~~~~~-----~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 226 (272)
T 3u4t_A 152 YYYNK-----EYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEY 226 (272)
T ss_dssp HHHTT-----CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHH
T ss_pred HHHHH-----HHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHH
Confidence 88643 999999999999986 558899999999999998 899999999998863 22 34444
Q ss_pred HHHHHhhcChhcHHHHHHHHHhhhcCCCC
Q 019340 313 KNVILQQLSATSRDRAMLVVDSWRAMPSL 341 (342)
Q Consensus 313 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 341 (342)
++.+. ...++.++|...+++..+..|.
T Consensus 227 l~~~~--~~~~~~~~A~~~~~~al~~~p~ 253 (272)
T 3u4t_A 227 IAYYY--TINRDKVKADAAWKNILALDPT 253 (272)
T ss_dssp HHHHH--HHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHH--HHcCCHHHHHHHHHHHHhcCcc
Confidence 44444 4569999999999999888775
No 29
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.85 E-value=2.5e-19 Score=169.73 Aligned_cols=259 Identities=10% Similarity=-0.012 Sum_probs=180.5
Q ss_pred HHHHHHHhhCCChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHH
Q 019340 67 DVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAG 144 (342)
Q Consensus 67 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg 144 (342)
.....+...+..|++.+|...+...++.. +++.+++.+|.+|.. .+++++|+..|+++++. +++.+++.+|
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 80 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALELK---EDPVFYSNLSACYVS----VGDLKKVVEMSTKALELKPDYSKVLLRRA 80 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHCSCCHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC---ccHHHHHhHHHHHHH----HhhHHHHHHHHHHHhccChHHHHHHHHHH
Confidence 34555666677788888887777777664 367888888888887 57888888888888775 4777888888
Q ss_pred HHHhcCCCHHHHHHHHHHHHhCCC--------------------------------------------------------
Q 019340 145 LMYWEMDKKEAAISLYRQAAVLGD-------------------------------------------------------- 168 (342)
Q Consensus 145 ~~~~~~~~~~~A~~~~~~a~~~~~-------------------------------------------------------- 168 (342)
.+|...|++++|+..|++++..+.
T Consensus 81 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (514)
T 2gw1_A 81 SANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPS 160 (514)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCC
T ss_pred HHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCch
Confidence 888888888888888888765542
Q ss_pred -------------------------HHHHHHHHHHHHc-CCccCHHHHHHHHHHHHH----------------cCCHHHH
Q 019340 169 -------------------------PAGQFNLGISYLQ-AQPANAEEAVKLLYQASI----------------AGHVRAQ 206 (342)
Q Consensus 169 -------------------------~~a~~~Lg~~~~~-g~~~~~~~A~~~~~~a~~----------------~~~~~a~ 206 (342)
+.+++.+|.++.. ...+++++|+.+|+++++ +.++.++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (514)
T 2gw1_A 161 VTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISL 240 (514)
T ss_dssp HHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHH
T ss_pred hHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHH
Confidence 5666777776662 226778888888888777 3456777
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHH
Q 019340 207 YQLALCLHRGRGVDFNLQEAARWYLRAAEGGY-VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGL 283 (342)
Q Consensus 207 ~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~~~-~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~ 283 (342)
+.+|.++.. .+++++|+.+|+++++... ..+++.+|.+|.. .| ++++|+.+|++++.. .+..++..+|.
T Consensus 241 ~~~~~~~~~----~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~-~~---~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 312 (514)
T 2gw1_A 241 EHTGIFKFL----KNDPLGAHEDIKKAIELFPRVNSYIYMALIMAD-RN---DSTEYYNYFDKALKLDSNNSSVYYHRGQ 312 (514)
T ss_dssp HHHHHHHHH----SSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHT-SS---CCTTGGGHHHHHHTTCTTCTHHHHHHHH
T ss_pred HHHHHHHHH----CCCHHHHHHHHHHHHhhCccHHHHHHHHHHHHH-CC---CHHHHHHHHHHHhhcCcCCHHHHHHHHH
Confidence 788888776 6678888888887776421 6677777777754 22 667777777777664 34566667777
Q ss_pred HhhhcCCHHHHHHHHHHHHHcCcHHHHHHHHHHHhhcChhcHHHHHHHHHhhhcCCC
Q 019340 284 GLFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPS 340 (342)
Q Consensus 284 ~~~~~~~~~~A~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 340 (342)
+|...|++++|+.+|+++++..+.+..........+...++.++|...+++..+..|
T Consensus 313 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 369 (514)
T 2gw1_A 313 MNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFP 369 (514)
T ss_dssp HHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHST
T ss_pred HHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc
Confidence 777777777777777777766554444444445555566666667666666554443
No 30
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.84 E-value=3.3e-20 Score=168.49 Aligned_cols=248 Identities=14% Similarity=0.013 Sum_probs=197.0
Q ss_pred ChhHHhhHH-HHHHHHHHhCcCC--CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCC
Q 019340 78 LPQLRAASL-VCKSWNDALRPLR--EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDK 152 (342)
Q Consensus 78 ~~~~~~a~~-~~~~~~~~~~~~~--~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~ 152 (342)
.+++.+|.. .+...++..+..+ ++..++.+|.+|.. .+++++|+.+|+++++. +++.+++.+|.+|...|+
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQ----EGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHH----TTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcC
Confidence 355666654 3333333333322 35678899999999 58999999999999997 488999999999999999
Q ss_pred HHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHcC--CHHHHH----------------HHHHH
Q 019340 153 KEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIAG--HVRAQY----------------QLALC 212 (342)
Q Consensus 153 ~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~~--~~~a~~----------------~lg~~ 212 (342)
+++|+.+|+++++. +++.+++.+|.+|. ..+++++|+.+|++++... +..++. .+|.+
T Consensus 114 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (368)
T 1fch_A 114 ELLAISALRRCLELKPDNQTALMALAVSFT--NESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSL 191 (368)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHH
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHH
Confidence 99999999999865 68999999999999 8999999999999998853 333332 56777
Q ss_pred HhcCCCCCCCHHHHHHHHHHHHHC--C--CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhh
Q 019340 213 LHRGRGVDFNLQEAARWYLRAAEG--G--YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLF 286 (342)
Q Consensus 213 ~~~g~~~~~~~~~A~~~~~~A~~~--~--~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~ 286 (342)
+ . .+++++|+.+|+++++. . ++.+++.+|.+|.. . +++++|+.+|++++.. .++.+++++|.++.
T Consensus 192 ~-~----~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~-~---g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~ 262 (368)
T 1fch_A 192 L-S----DSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNL-S---GEYDKAVDCFTAALSVRPNDYLLWNKLGATLA 262 (368)
T ss_dssp H-H----HHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHH-T---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred h-h----cccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHH-c---CCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Confidence 7 3 56899999999999886 3 57899999999965 3 3999999999999886 56889999999999
Q ss_pred hcCCHHHHHHHHHHHHHcCcHHHHHHHHHHHhhcChhcHHHHHHHHHhhhcCCC
Q 019340 287 TEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPS 340 (342)
Q Consensus 287 ~~~~~~~A~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 340 (342)
..|++++|+.+|+++++..+.+..........+...++.++|...+++..+..|
T Consensus 263 ~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 316 (368)
T 1fch_A 263 NGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQR 316 (368)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 999999999999999998766555555555666667999999998888765443
No 31
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.84 E-value=2.2e-19 Score=164.95 Aligned_cols=227 Identities=6% Similarity=-0.157 Sum_probs=192.5
Q ss_pred HHHhhCCChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCC-HHHHHHHHHHHHhC--CCHHHHHHHHHHH
Q 019340 71 KIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKN-LDKALDSFLKGAAR--GSTLAMVDAGLMY 147 (342)
Q Consensus 71 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~-~~~A~~~~~~A~~~--~~~~a~~~lg~~~ 147 (342)
........+++.+|...+.+.++..+. ++.+++.+|.++.. .++ +++|+.+|++++.. ++..+++++|.++
T Consensus 103 lg~~~~~~g~~~~Al~~~~~al~l~P~--~~~a~~~~g~~l~~----~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 103 FRAVLQRDERSERAFKLTRDAIELNAA--NYTVWHFRRVLLKS----LQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHTCCCHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHH----TTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCChHHHHHHHHHHHHhCcc--CHHHHHHHHHHHHH----cccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 333445678899999999999988765 89999999999998 465 99999999999996 4899999999999
Q ss_pred hcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhc-CCCCCCC
Q 019340 148 WEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLALCLHR-GRGVDFN 222 (342)
Q Consensus 148 ~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~-g~~~~~~ 222 (342)
...|++++|+..|+++++. +++.+++++|.++. ..+++++|+.+|+++++. +++.+++++|.++.. ++ .
T Consensus 177 ~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~--~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~----~ 250 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQ--EFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTG----Y 250 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHH--HHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC----S
T ss_pred HHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHH--HcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC----c
Confidence 9999999999999999865 88999999999999 889999999999999885 689999999999987 32 2
Q ss_pred HHHH-----HHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhhcC----
Q 019340 223 LQEA-----ARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEG---- 289 (342)
Q Consensus 223 ~~~A-----~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~---- 289 (342)
.++| +.+|++|+.. ++..+++++|.++.. .| ..++++|+.+++++ +. ++..++..||.+|...+
T Consensus 251 ~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~-~g-~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~ 327 (382)
T 2h6f_A 251 NDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQD-RG-LSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQC 327 (382)
T ss_dssp CSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTT-TC-GGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHc-cC-ccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccc
Confidence 2445 6999999876 689999999999964 33 24789999999887 44 66889999999998874
Q ss_pred ----C-HHHHHHHHHHH-HHcCcHHHHHH
Q 019340 290 ----E-MMKAVVYLELA-TRAGETAADHV 312 (342)
Q Consensus 290 ----~-~~~A~~~~~~a-~~~~~~~a~~~ 312 (342)
+ +++|+.+|+++ ++.++....+.
T Consensus 328 ~~~~~~~~~A~~~~~~l~~~~DP~r~~~w 356 (382)
T 2h6f_A 328 DNKEDILNKALELCEILAKEKDTIRKEYW 356 (382)
T ss_dssp SSHHHHHHHHHHHHHHHHHTTCGGGHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhCchhHHHH
Confidence 3 59999999999 88887655443
No 32
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.83 E-value=1.4e-18 Score=149.41 Aligned_cols=215 Identities=12% Similarity=0.065 Sum_probs=176.3
Q ss_pred HHHHHHhhCCChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC--C-------HH
Q 019340 68 VLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--S-------TL 138 (342)
Q Consensus 68 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~-------~~ 138 (342)
....+...+..|++.+|...+....+.. .++.+++.+|.+|.. .+++++|+.+|+++++.. + +.
T Consensus 8 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 80 (258)
T 3uq3_A 8 EKAEGNKFYKARQFDEAIEHYNKAWELH---KDITYLNNRAAAEYE----KGEYETAISTLNDAVEQGREMRADYKVISK 80 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS---CCTHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhh---ccHHHHHHHHHHHHH----cccHHHHHHHHHHHHHhCcccccchHHHHH
Confidence 4455556677888888888888877765 477888888988888 588999999999988753 2 67
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHcC--CHHHHHHHHHHHhcC
Q 019340 139 AMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQFNLGISYLQAQPANAEEAVKLLYQASIAG--HVRAQYQLALCLHRG 216 (342)
Q Consensus 139 a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g 216 (342)
+++.+|.+|...|++++|+.+|++++..... +.++. ..+++++|+.++++++... ++.+++.+|.++..
T Consensus 81 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~- 151 (258)
T 3uq3_A 81 SFARIGNAYHKLGDLKKTIEYYQKSLTEHRT------ADILT--KLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFT- 151 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC------HHHHH--HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhcCch------hHHHH--HHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHH-
Confidence 8888999998899999999999998876332 33444 5567788888888887764 67889999999987
Q ss_pred CCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhhcCCHH
Q 019340 217 RGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMM 292 (342)
Q Consensus 217 ~~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~ 292 (342)
.+++++|+.+|+++++. .++.+++++|.+|.. . +++++|+.+|+++++. .++.+++.+|.+|...|+++
T Consensus 152 ---~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~-~---~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~ 224 (258)
T 3uq3_A 152 ---KSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAK-L---MSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYA 224 (258)
T ss_dssp ---TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-T---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred ---hcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH-h---CCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHH
Confidence 77999999999999875 578899999999965 2 3999999999999876 56889999999999999999
Q ss_pred HHHHHHHHHHHcC
Q 019340 293 KAVVYLELATRAG 305 (342)
Q Consensus 293 ~A~~~~~~a~~~~ 305 (342)
+|+.+|+++++..
T Consensus 225 ~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 225 SALETLDAARTKD 237 (258)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC
Confidence 9999999999876
No 33
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.83 E-value=1.3e-19 Score=160.69 Aligned_cols=251 Identities=10% Similarity=0.009 Sum_probs=165.4
Q ss_pred HHhhCCChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCC
Q 019340 72 IAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMD 151 (342)
Q Consensus 72 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~ 151 (342)
+...|..|+++.+...+..+....++ ....+.+.++.+|.. .++++.|+..++.. ...+..++..++..+...+
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~p~-~~~e~~~~l~r~yi~----~g~~~~al~~~~~~-~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSSPE-RDVERDVFLYRAYLA----QRKYGVVLDEIKPS-SAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCSHH-HHHHHHHHHHHHHHH----TTCHHHHHHHSCTT-SCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCch-hhHHHHHHHHHHHHH----CCCHHHHHHHhccc-CChhHHHHHHHHHHHcCCC
Confidence 44456677777776444333222111 012455667777777 46788888776552 2224456667777887778
Q ss_pred CHHHHHHHHHHHHh----CCCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCCCHHHHH
Q 019340 152 KKEAAISLYRQAAV----LGDPAGQFNLGISYLQAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAA 227 (342)
Q Consensus 152 ~~~~A~~~~~~a~~----~~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~ 227 (342)
+.++|++.+++.+. ++++.+++.+|.++. ..|++++|+.+|++ +++++++..+|.+|.. .+++++|+
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~--~~g~~~~Al~~l~~---~~~~~~~~~l~~~~~~----~g~~~~A~ 150 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYF--YDQNPDAALRTLHQ---GDSLECMAMTVQILLK----LDRLDLAR 150 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHH--HTTCHHHHHHHHTT---CCSHHHHHHHHHHHHH----TTCHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHH--HCCCHHHHHHHHhC---CCCHHHHHHHHHHHHH----CCCHHHHH
Confidence 88888888888764 357778888888888 77888888888887 6778888888888876 66788888
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHH---cCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhhcCCHHHHHHHHHHHH
Q 019340 228 RWYLRAAEGGYVRAMYNTSLCYS---FGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELAT 302 (342)
Q Consensus 228 ~~~~~A~~~~~~~a~~~lg~~y~---~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~ 302 (342)
..|+++++........+++..+. .+.| ++++|+.+|+++++. +++.+++++|.++...|++++|..+|++++
T Consensus 151 ~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~---~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al 227 (291)
T 3mkr_A 151 KELKKMQDQDEDATLTQLATAWVSLAAGGE---KLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEAL 227 (291)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHCTT---HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhCcCcHHHHHHHHHHHHHhCch---HHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 88888876543223333332211 2233 788888888888775 557777888888888888888888888888
Q ss_pred HcCc--HHHHHHHHHHHhhcChhcHH-HHHHHHHhhhcCCCCC
Q 019340 303 RAGE--TAADHVKNVILQQLSATSRD-RAMLVVDSWRAMPSLH 342 (342)
Q Consensus 303 ~~~~--~~a~~~~~~~~~~~~~~~~~-~a~~~~~~~~~~~~~~ 342 (342)
+..+ +++..+++.+... .++.+ .+.++.+++.+.+|.|
T Consensus 228 ~~~p~~~~~l~~l~~~~~~--~g~~~eaa~~~~~~~~~~~P~~ 268 (291)
T 3mkr_A 228 DKDSGHPETLINLVVLSQH--LGKPPEVTNRYLSQLKDAHRSH 268 (291)
T ss_dssp HHCTTCHHHHHHHHHHHHH--TTCCHHHHHHHHHHHHHHCTTC
T ss_pred HhCCCCHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHhCCCC
Confidence 7754 4445555544443 33443 4566777777776654
No 34
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.83 E-value=7.3e-19 Score=151.14 Aligned_cols=219 Identities=12% Similarity=0.021 Sum_probs=185.6
Q ss_pred CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC-CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CC-------H
Q 019340 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR-GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GD-------P 169 (342)
Q Consensus 100 ~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~-~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~-------~ 169 (342)
.+.+++.+|.++.. .+++++|+.+|+++++. .++.+++.+|.+|...|++++|+.+|+++++. .+ +
T Consensus 4 ~a~~~~~~g~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 79 (258)
T 3uq3_A 4 MADKEKAEGNKFYK----ARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVIS 79 (258)
T ss_dssp HHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHHHHH----hccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHH
Confidence 46788999999999 58999999999999876 57889999999999999999999999999865 22 7
Q ss_pred HHHHHHHHHHHcCCccCHHHHHHHHHHHHHcC-CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHH
Q 019340 170 AGQFNLGISYLQAQPANAEEAVKLLYQASIAG-HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG--YVRAMYNTS 246 (342)
Q Consensus 170 ~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~~-~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~~--~~~a~~~lg 246 (342)
.+++.+|.+|. ..+++++|+.+|+++++.. ....+.. .+++++|+..+++++... ++.+++.+|
T Consensus 80 ~~~~~l~~~~~--~~~~~~~A~~~~~~a~~~~~~~~~~~~-----------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 146 (258)
T 3uq3_A 80 KSFARIGNAYH--KLGDLKKTIEYYQKSLTEHRTADILTK-----------LRNAEKELKKAEAEAYVNPEKAEEARLEG 146 (258)
T ss_dssp HHHHHHHHHHH--HTTCHHHHHHHHHHHHHHCCCHHHHHH-----------HHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--HcccHHHHHHHHHHHHhcCchhHHHHH-----------HhHHHHHHHHHHHHHHcCcchHHHHHHHH
Confidence 89999999999 8999999999999999864 4443333 346789999999999874 677899999
Q ss_pred HHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCcHHHHHHHHHHHhhcChhc
Q 019340 247 LCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATS 324 (342)
Q Consensus 247 ~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~ 324 (342)
.+|... +++++|+.+|++++.. .++.+++++|.+|...|++++|+.+|+++++..+.+..........+...++
T Consensus 147 ~~~~~~----~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~ 222 (258)
T 3uq3_A 147 KEYFTK----SDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKE 222 (258)
T ss_dssp HHHHHT----TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHh----cCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhh
Confidence 999653 3999999999999886 5688999999999999999999999999999876555555555555566689
Q ss_pred HHHHHHHHHhhhcCC
Q 019340 325 RDRAMLVVDSWRAMP 339 (342)
Q Consensus 325 ~~~a~~~~~~~~~~~ 339 (342)
.++|...+++..+..
T Consensus 223 ~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 223 YASALETLDAARTKD 237 (258)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999888876654
No 35
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.83 E-value=5.5e-19 Score=145.05 Aligned_cols=171 Identities=20% Similarity=0.283 Sum_probs=155.6
Q ss_pred CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHH
Q 019340 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNL 175 (342)
Q Consensus 100 ~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~L 175 (342)
.+..++.||.+|.. .|++++|+.+|+++++. +++.+++.+|.+|...|++++|+..++++... .++.++..+
T Consensus 4 ~~~iy~~lG~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 79 (184)
T 3vtx_A 4 TTTIYMDIGDKKRT----KGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYIL 79 (184)
T ss_dssp CHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHH
Confidence 57788999999999 69999999999999986 58999999999999999999999999999755 789999999
Q ss_pred HHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHc
Q 019340 176 GISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSF 251 (342)
Q Consensus 176 g~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~ 251 (342)
|.++. ..+++++|+.++.+++.. .++.++..+|.+|.. .+++++|+.+|+++++. .++.+++++|.+|..
T Consensus 80 ~~~~~--~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~ 153 (184)
T 3vtx_A 80 GSANF--MIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDS----MGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEG 153 (184)
T ss_dssp HHHHH--HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHH--HcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH----hCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHH
Confidence 99999 889999999999998874 689999999999998 78999999999999886 689999999999965
Q ss_pred CCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 019340 252 GEGLPLSHRQARKWMKRAADCGHGKAQLEHGLG 284 (342)
Q Consensus 252 g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~ 284 (342)
.| ++++|+.+|++|++.++..+.++||.+
T Consensus 154 -~g---~~~~A~~~~~~al~~~p~~a~~~lali 182 (184)
T 3vtx_A 154 -KG---LRDEAVKYFKKALEKEEKKAKYELALV 182 (184)
T ss_dssp -TT---CHHHHHHHHHHHHHTTHHHHHHCSCCS
T ss_pred -CC---CHHHHHHHHHHHHhCCccCHHHHHHhh
Confidence 33 999999999999999888888877754
No 36
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.83 E-value=1e-18 Score=166.63 Aligned_cols=256 Identities=14% Similarity=0.069 Sum_probs=201.8
Q ss_pred HHHHHHHHhhCCChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHH
Q 019340 66 FDVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDA 143 (342)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~l 143 (342)
......+...+..|++.+|...+...++..+. ++.+++.+|.+|.. .+++++|+..|+++++. +++.+++.+
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l 99 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELDPN--EPVFYSNISACYIS----TGDLEKVIEFTTKALEIKPDHSKALLRR 99 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTT--CHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCCC--CcHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 34566666778899999999999888887655 88999999999998 58999999999999886 588999999
Q ss_pred HHHHhcCCCHHHHHHHHHHHH-----------------------------------------------------------
Q 019340 144 GLMYWEMDKKEAAISLYRQAA----------------------------------------------------------- 164 (342)
Q Consensus 144 g~~~~~~~~~~~A~~~~~~a~----------------------------------------------------------- 164 (342)
|.+|...|++++|+..|+ ++
T Consensus 100 a~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (537)
T 3fp2_A 100 ASANESLGNFTDAMFDLS-VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHL 178 (537)
T ss_dssp HHHHHHHTCHHHHHHHHH-HHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHH
T ss_pred HHHHHHcCCHHHHHHHHH-HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHH
Confidence 999999999888887663 22
Q ss_pred ---------------------------------------------------h--CCC-------HHHHHHHHHHHHcCCc
Q 019340 165 ---------------------------------------------------V--LGD-------PAGQFNLGISYLQAQP 184 (342)
Q Consensus 165 ---------------------------------------------------~--~~~-------~~a~~~Lg~~~~~g~~ 184 (342)
+ +++ ..+++.+|.++. ..
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~--~~ 256 (537)
T 3fp2_A 179 EVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHF--LK 256 (537)
T ss_dssp HHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHH--HT
T ss_pred HHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHH--hc
Confidence 1 122 224666777777 77
Q ss_pred cCHHHHHHHHHHHHHcC-CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHH
Q 019340 185 ANAEEAVKLLYQASIAG-HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQ 261 (342)
Q Consensus 185 ~~~~~A~~~~~~a~~~~-~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~ 261 (342)
+++++|+.+|+++++.. .+.+++.+|.+|.. .+++++|+.+|+++++. .++.+++.+|.+|.. .+++++
T Consensus 257 ~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~ 328 (537)
T 3fp2_A 257 NNLLDAQVLLQESINLHPTPNSYIFLALTLAD----KENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFI----LQDYKN 328 (537)
T ss_dssp TCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCC----SSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHH
T ss_pred ccHHHHHHHHHHHHhcCCCchHHHHHHHHHHH----hcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHh----cCCHHH
Confidence 88999999999987753 37888899999877 77889999999998875 578889999999865 238999
Q ss_pred HHHHHHHHHHc--CCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCcHHHHHHHHHHHhhcChhcHHHHHHHHHhhhcC
Q 019340 262 ARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRAM 338 (342)
Q Consensus 262 A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 338 (342)
|+.+|++++.. .+..+++.+|.++...|++++|+.+|+++++..+.+..........+...++.++|...+++..+.
T Consensus 329 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 407 (537)
T 3fp2_A 329 AKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRL 407 (537)
T ss_dssp HHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 99999999876 457888999999999999999999999998886554444444444445568888888888776543
No 37
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.82 E-value=2.1e-18 Score=155.23 Aligned_cols=253 Identities=15% Similarity=0.060 Sum_probs=204.6
Q ss_pred HHHHHHHhhCCChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHH
Q 019340 67 DVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAG 144 (342)
Q Consensus 67 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg 144 (342)
..+..+...+..|++.+|...+....+..+. ++.+++.+|.+|.. .+++++|+.+|+++++. +++.+++.+|
T Consensus 5 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 78 (359)
T 3ieg_A 5 KHLELGKKLLAAGQLADALSQFHAAVDGDPD--NYIAYYRRATVFLA----MGKSKAALPDLTKVIALKMDFTAARLQRG 78 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc--cHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 4456666778899999999999888887655 78899999999988 58999999999999885 4788999999
Q ss_pred HHHhcCCCHHHHHHHHHHHHhCC-----CHHHHHHH------------HHHHHcCCccCHHHHHHHHHHHHHc--CCHHH
Q 019340 145 LMYWEMDKKEAAISLYRQAAVLG-----DPAGQFNL------------GISYLQAQPANAEEAVKLLYQASIA--GHVRA 205 (342)
Q Consensus 145 ~~~~~~~~~~~A~~~~~~a~~~~-----~~~a~~~L------------g~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a 205 (342)
.++...|++++|+.+|+++++.. ++.++..+ |.++. ..+++++|+.+|+++++. .++.+
T Consensus 79 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~--~~~~~~~A~~~~~~~~~~~~~~~~~ 156 (359)
T 3ieg_A 79 HLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAF--DGADYTAAITFLDKILEVCVWDAEL 156 (359)
T ss_dssp HHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHH--HccCHHHHHHHHHHHHHhCCCchHH
Confidence 99999999999999999998763 45666666 56777 788999999999998774 58899
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHH--
Q 019340 206 QYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQL-- 279 (342)
Q Consensus 206 ~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~-- 279 (342)
+..+|.++.. .+++++|+.+|++++.. .++.+++.+|.+|.. .+++++|+.+|+++++. .+..++.
T Consensus 157 ~~~~~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 228 (359)
T 3ieg_A 157 RELRAECFIK----EGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQ----LGDHELSLSEVRECLKLDQDHKRCFAHY 228 (359)
T ss_dssp HHHHHHHHHH----TTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCccchHHHHHH
Confidence 9999999987 77899999999999876 578899999999965 33899999999999876 3444432
Q ss_pred ----------HHHHHhhhcCCHHHHHHHHHHHHHcCcHHHHHHHHHH----------HhhcChhcHHHHHHHHHhhhcCC
Q 019340 280 ----------EHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVI----------LQQLSATSRDRAMLVVDSWRAMP 339 (342)
Q Consensus 280 ----------~Lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~~~~~----------~~~~~~~~~~~a~~~~~~~~~~~ 339 (342)
.+|.++...|++++|+.+|+++++..+. ... ..+...++.++|...+++..+..
T Consensus 229 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 302 (359)
T 3ieg_A 229 KQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS------VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME 302 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS------SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 4488899999999999999999887654 232 12335677888888888887765
Q ss_pred CC
Q 019340 340 SL 341 (342)
Q Consensus 340 ~~ 341 (342)
|.
T Consensus 303 ~~ 304 (359)
T 3ieg_A 303 PD 304 (359)
T ss_dssp TT
T ss_pred cc
Confidence 53
No 38
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.82 E-value=1e-18 Score=165.46 Aligned_cols=258 Identities=14% Similarity=0.010 Sum_probs=217.5
Q ss_pred cHHHHHHHHhhCCChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCCC--------
Q 019340 65 PFDVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGS-------- 136 (342)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~-------- 136 (342)
+......+...+..|++.+|...+....+..+. ++.+++.+|.+|.. .+++++|+..|++++..+.
T Consensus 39 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~ 112 (514)
T 2gw1_A 39 PVFYSNLSACYVSVGDLKKVVEMSTKALELKPD--YSKVLLRRASANEG----LGKFADAMFDLSVLSLNGDFNDASIEP 112 (514)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSC--CHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHSSSCCGGGTHH
T ss_pred HHHHHhHHHHHHHHhhHHHHHHHHHHHhccChH--HHHHHHHHHHHHHH----HhhHHHHHHHHHHHHhcCCCccchHHH
Confidence 344555666677889999999999988887654 88999999999999 5899999999999987653
Q ss_pred -------------------------------------------------------------------------HHHHHHH
Q 019340 137 -------------------------------------------------------------------------TLAMVDA 143 (342)
Q Consensus 137 -------------------------------------------------------------------------~~a~~~l 143 (342)
+.+++.+
T Consensus 113 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (514)
T 2gw1_A 113 MLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMN 192 (514)
T ss_dssp HHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHH
Confidence 6777888
Q ss_pred HHHHhc---CCCHHHHHHHHHHHHh----------------CCCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHcC-CH
Q 019340 144 GLMYWE---MDKKEAAISLYRQAAV----------------LGDPAGQFNLGISYLQAQPANAEEAVKLLYQASIAG-HV 203 (342)
Q Consensus 144 g~~~~~---~~~~~~A~~~~~~a~~----------------~~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~~-~~ 203 (342)
|.++.. .|++++|+.+|+++++ ..++.+++.+|.++. ..+++++|+.+|+++++.. .+
T Consensus 193 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~A~~~~~~~l~~~~~~ 270 (514)
T 2gw1_A 193 GLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKF--LKNDPLGAHEDIKKAIELFPRV 270 (514)
T ss_dssp HHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHH--HSSCHHHHHHHHHHHHHHCCCH
T ss_pred HHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHhhCccH
Confidence 888876 8999999999999998 345789999999999 8899999999999998743 28
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHH
Q 019340 204 RAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQL 279 (342)
Q Consensus 204 ~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~ 279 (342)
.+++.+|.+|.. .+++++|+.+|++++.. .++.++..+|.+|.. .| ++++|+.+|++++.. .+..++.
T Consensus 271 ~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~---~~~~A~~~~~~~~~~~~~~~~~~~ 342 (514)
T 2gw1_A 271 NSYIYMALIMAD----RNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFI-LQ---NYDQAGKDFDKAKELDPENIFPYI 342 (514)
T ss_dssp HHHHHHHHHHHT----SSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHH-TT---CTTHHHHHHHHHHHTCSSCSHHHH
T ss_pred HHHHHHHHHHHH----CCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHH-hC---CHHHHHHHHHHHHHhChhhHHHHH
Confidence 999999999987 77899999999999986 478899999999965 33 999999999999886 5678999
Q ss_pred HHHHHhhhcCCHHHHHHHHHHHHHcCcHHHHHHHHHHHhhcChhcHHHHHHHHHhhhcC
Q 019340 280 EHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRAM 338 (342)
Q Consensus 280 ~Lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 338 (342)
.+|.++...|++++|+.+|+++++..+.+..........+...++.++|...+++..+.
T Consensus 343 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 401 (514)
T 2gw1_A 343 QLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIEL 401 (514)
T ss_dssp HHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999986554444444455555668899999988877554
No 39
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.82 E-value=1.7e-18 Score=159.89 Aligned_cols=257 Identities=16% Similarity=0.071 Sum_probs=207.0
Q ss_pred HHHHHHhhCCChhHHhhHHHHHHHHHHhCcCCC--HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--------CCH
Q 019340 68 VLNKIAASFTLPQLRAASLVCKSWNDALRPLRE--AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--------GST 137 (342)
Q Consensus 68 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--------~~~ 137 (342)
....+...+..|++.+|...+...++..+.... +.+++.+|.+|.. .+++++|+.+|+++++. ...
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~ 126 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFY----LGDYNKAMQYHKHDLTLAKSMNDRLGEA 126 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence 445566678889999999999998887554221 2689999999998 68999999999999875 245
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHhC--------CCHHHHHHHHHHHHcCCccC-----------------HHHHHH
Q 019340 138 LAMVDAGLMYWEMDKKEAAISLYRQAAVL--------GDPAGQFNLGISYLQAQPAN-----------------AEEAVK 192 (342)
Q Consensus 138 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--------~~~~a~~~Lg~~~~~g~~~~-----------------~~~A~~ 192 (342)
.++..+|.+|...|++++|+.+|+++++. ....++.++|.+|. ..++ +++|+.
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~~~~~~~~~~~a~~~~~~A~~ 204 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYH--AKGKHLGQRNPGKFGDDVKEALTRAVE 204 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH--HHHHHHHHHSTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH--HcCcccccccchhhhhhhhHHHHHHHH
Confidence 67899999999999999999999999854 23568999999999 8888 999999
Q ss_pred HHHHHHHc----C----CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC----CC----HHHHHHHHHHHHcCCCCc
Q 019340 193 LLYQASIA----G----HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG----GY----VRAMYNTSLCYSFGEGLP 256 (342)
Q Consensus 193 ~~~~a~~~----~----~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~----~~----~~a~~~lg~~y~~g~g~~ 256 (342)
+|+++++. + ...++.++|.+|.. .+++++|+.+|+++++. ++ ..+++++|.+|.. .|
T Consensus 205 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~-~g-- 277 (411)
T 4a1s_A 205 FYQENLKLMRDLGDRGAQGRACGNLGNTYYL----LGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIF-LG-- 277 (411)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHT-TT--
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH-Cc--
Confidence 99998763 2 35688999999998 78999999999999875 22 3488999999965 33
Q ss_pred ccHHHHHHHHHHHHHc----CC----HHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCc------HHHHHHHHHHHhhcCh
Q 019340 257 LSHRQARKWMKRAADC----GH----GKAQLEHGLGLFTEGEMMKAVVYLELATRAGE------TAADHVKNVILQQLSA 322 (342)
Q Consensus 257 ~~~~~A~~~~~~a~~~----~~----~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~------~~a~~~~~~~~~~~~~ 322 (342)
++++|+.+|+++++. ++ ..++..+|.+|...|++++|..+|+++++... ..+.....+...+...
T Consensus 278 -~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 356 (411)
T 4a1s_A 278 -QFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAI 356 (411)
T ss_dssp -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred -CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHh
Confidence 999999999999875 22 56789999999999999999999999987632 2233344444455566
Q ss_pred hcHHHHHHHHHhhhcC
Q 019340 323 TSRDRAMLVVDSWRAM 338 (342)
Q Consensus 323 ~~~~~a~~~~~~~~~~ 338 (342)
++.++|...+++..+.
T Consensus 357 g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 357 GGHERALKYAEQHLQL 372 (411)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHH
Confidence 8999999988876543
No 40
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.82 E-value=2.5e-18 Score=164.02 Aligned_cols=248 Identities=14% Similarity=0.048 Sum_probs=167.7
Q ss_pred hhHHhhHHHHHHHHHHhCcCCC-----HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHhcCCC
Q 019340 79 PQLRAASLVCKSWNDALRPLRE-----AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG-STLAMVDAGLMYWEMDK 152 (342)
Q Consensus 79 ~~~~~a~~~~~~~~~~~~~~~~-----a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~-~~~a~~~lg~~~~~~~~ 152 (342)
+++.+|...+....+..++... +.+++.+|.++.. .+++++|+.+|++++... ++.+++.+|.++...|+
T Consensus 216 ~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 291 (537)
T 3fp2_A 216 DLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFL----KNNLLDAQVLLQESINLHPTPNSYIFLALTLADKEN 291 (537)
T ss_dssp HHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSC
T ss_pred HHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHh----cccHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcC
Confidence 3566666666666555444211 3456777777776 478888888888877753 46777788888888888
Q ss_pred HHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCCCCHHHHHH
Q 019340 153 KEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAAR 228 (342)
Q Consensus 153 ~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~ 228 (342)
+++|+.+|+++++. .++.+++.+|.++. ..+++++|+.+|+++++. .++.+++.+|.+|.. .+++++|+.
T Consensus 292 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~----~g~~~~A~~ 365 (537)
T 3fp2_A 292 SQEFFKFFQKAVDLNPEYPPTYYHRGQMYF--ILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYK----QGKFTESEA 365 (537)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHH----TTCHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHH
Confidence 88888888887654 66777888888887 777888888888887664 467777888888776 667888888
Q ss_pred HHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCC--------HHHHHHHHHHhhhc----------
Q 019340 229 WYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGH--------GKAQLEHGLGLFTE---------- 288 (342)
Q Consensus 229 ~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~--------~~a~~~Lg~~~~~~---------- 288 (342)
+|+++++. .++.++..+|.+|... | ++++|+.+|+++++..+ ...++.+|.++...
T Consensus 366 ~~~~~~~~~~~~~~~~~~l~~~~~~~-g---~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 441 (537)
T 3fp2_A 366 FFNETKLKFPTLPEVPTFFAEILTDR-G---DFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDE 441 (537)
T ss_dssp HHHHHHHHCTTCTHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCH
T ss_pred HHHHHHHhCCCChHHHHHHHHHHHHh-C---CHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhH
Confidence 88877765 4667777788777542 2 77777777777766421 12345666777776
Q ss_pred CCHHHHHHHHHHHHHcCcHHHHHHHHHHHhhcChhcHHHHHHHHHhhhcCCC
Q 019340 289 GEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPS 340 (342)
Q Consensus 289 ~~~~~A~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 340 (342)
|++++|+.+|+++++..+.+......+...+...++.++|...+++..+..|
T Consensus 442 ~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 493 (537)
T 3fp2_A 442 EKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILAR 493 (537)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 7777777777777776554443334444444455777777777777665544
No 41
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.81 E-value=1.7e-18 Score=147.75 Aligned_cols=196 Identities=18% Similarity=0.161 Sum_probs=156.5
Q ss_pred CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHH
Q 019340 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNL 175 (342)
Q Consensus 100 ~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~L 175 (342)
.+.+++.+|.++.. .+++++|+.+|+++++. .++.+++.+|.++...|++++|+.+|+++++. .++.+++.+
T Consensus 22 ~~~~~~~~a~~~~~----~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 97 (243)
T 2q7f_A 22 ASMTGGQQMGRGSE----FGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGA 97 (243)
T ss_dssp ------------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHH----hhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHH
Confidence 45677888888887 58999999999999986 47899999999999999999999999998865 678999999
Q ss_pred HHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHc
Q 019340 176 GISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSF 251 (342)
Q Consensus 176 g~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~ 251 (342)
|.++. ..+++++|+.+|+++++. .++.+++.+|.++.. .+++++|+.+|+++++. .++.+++.+|.+|..
T Consensus 98 a~~~~--~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 171 (243)
T 2q7f_A 98 GNVYV--VKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVK----LEQPKLALPYLQRAVELNENDTEARFQFGMCLAN 171 (243)
T ss_dssp HHHHH--HTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH----TSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHH--HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH
Confidence 99999 889999999999998875 578999999999987 77999999999999876 578899999999965
Q ss_pred CCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCcHHH
Q 019340 252 GEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAA 309 (342)
Q Consensus 252 g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~~a 309 (342)
.+++++|+.+|++++.. .++.++..+|.+|...|++++|..+|+++++..+.+.
T Consensus 172 ----~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~ 227 (243)
T 2q7f_A 172 ----EGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHM 227 (243)
T ss_dssp ----HTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCH
T ss_pred ----cCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchH
Confidence 33899999999999886 5688999999999999999999999999998865443
No 42
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.81 E-value=1.5e-17 Score=160.80 Aligned_cols=221 Identities=15% Similarity=0.042 Sum_probs=194.2
Q ss_pred hCCChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCC
Q 019340 75 SFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDK 152 (342)
Q Consensus 75 ~~~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~ 152 (342)
....|++.+|...+....+..+ .++.+++.+|.+|.. .+++++|+.+|+++++. .+..+++.+|.+|...|+
T Consensus 349 ~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 422 (597)
T 2xpi_A 349 LHESGEKNKLYLISNDLVDRHP--EKAVTWLAVGIYYLC----VNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGE 422 (597)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCT--TSHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHhCCHHHHHHHHHHHHhhCc--ccHHHHHHHHHHHHH----hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 3466888889888887776654 378999999999999 58999999999999875 578999999999999999
Q ss_pred HHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCCCCHHHHHH
Q 019340 153 KEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAAR 228 (342)
Q Consensus 153 ~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~ 228 (342)
+++|+.+|+++++. +++.++..+|.+|. ..+++++|+.+|+++++. .++.++..+|.+|.. .+++++|+.
T Consensus 423 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~ 496 (597)
T 2xpi_A 423 HDQAISAYTTAARLFQGTHLPYLFLGMQHM--QLGNILLANEYLQSSYALFQYDPLLLNELGVVAFN----KSDMQTAIN 496 (597)
T ss_dssp HHHHHHHHHHHHHTTTTCSHHHHHHHHHHH--HHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----TTCHHHHHH
T ss_pred HHHHHHHHHHHHHhCccchHHHHHHHHHHH--HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----hCCHHHHHH
Confidence 99999999999876 67899999999999 889999999999999874 689999999999988 779999999
Q ss_pred HHHHHHHC------C-C--HHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhhcCCHHHHHHH
Q 019340 229 WYLRAAEG------G-Y--VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVY 297 (342)
Q Consensus 229 ~~~~A~~~------~-~--~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~ 297 (342)
+|+++++. . + ..++..+|.+|.. .| ++++|+.+|+++++. +++.++..||.+|...|++++|..+
T Consensus 497 ~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~-~g---~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 572 (597)
T 2xpi_A 497 HFQNALLLVKKTQSNEKPWAATWANLGHAYRK-LK---MYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITH 572 (597)
T ss_dssp HHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHhhhccccchhhHHHHHHHHHHHHHH-hc---CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHH
Confidence 99999875 2 1 6789999999965 33 999999999999876 5789999999999999999999999
Q ss_pred HHHHHHcCcHHHHH
Q 019340 298 LELATRAGETAADH 311 (342)
Q Consensus 298 ~~~a~~~~~~~a~~ 311 (342)
|+++++..+.+...
T Consensus 573 ~~~~l~~~p~~~~~ 586 (597)
T 2xpi_A 573 LHESLAISPNEIMA 586 (597)
T ss_dssp HHHHHHHCTTCHHH
T ss_pred HHHHHhcCCCChHH
Confidence 99999987654443
No 43
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.81 E-value=8e-18 Score=144.74 Aligned_cols=196 Identities=15% Similarity=0.026 Sum_probs=174.2
Q ss_pred HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHH
Q 019340 101 AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLG 176 (342)
Q Consensus 101 a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg 176 (342)
+.+++.+|.+|.. .+++++|+.+|+++++. +++.+++.+|.+|...|++++|+.+|+++++. .++.+++.+|
T Consensus 37 ~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la 112 (252)
T 2ho1_A 37 RDAYIQLGLGYLQ----RGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYG 112 (252)
T ss_dssp HHHHHHHHHHHHH----TTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHH
Confidence 5677889999988 58999999999999985 48899999999999999999999999999865 6789999999
Q ss_pred HHHHcCCccCHHHHHHHHHHHHH----cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH
Q 019340 177 ISYLQAQPANAEEAVKLLYQASI----AGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYS 250 (342)
Q Consensus 177 ~~~~~g~~~~~~~A~~~~~~a~~----~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~ 250 (342)
.+|. ..+++++|+.+|+++++ +.++.+++.+|.+|.. .+++++|+.+|+++++. .+..+++.+|.+|.
T Consensus 113 ~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 186 (252)
T 2ho1_A 113 GFLY--EQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQ----MKKPAQAKEYFEKSLRLNRNQPSVALEMADLLY 186 (252)
T ss_dssp HHHH--HTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH
T ss_pred HHHH--HHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHH
Confidence 9999 88999999999999987 3467899999999987 77999999999999886 57899999999996
Q ss_pred cCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCcHHHH
Q 019340 251 FGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAAD 310 (342)
Q Consensus 251 ~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~ 310 (342)
. .+++++|+.+|+++++. .+..++..++.++...|++++|..+++++++..+.+..
T Consensus 187 ~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 244 (252)
T 2ho1_A 187 K----EREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLE 244 (252)
T ss_dssp H----TTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHH
T ss_pred H----cCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHH
Confidence 5 23999999999999876 56888999999999999999999999999998765443
No 44
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.80 E-value=4.5e-18 Score=156.05 Aligned_cols=258 Identities=16% Similarity=0.066 Sum_probs=207.4
Q ss_pred HHHHHHHHhhCCChhHHhhHHHHHHHHHHhCcCCC--HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC----C----
Q 019340 66 FDVLNKIAASFTLPQLRAASLVCKSWNDALRPLRE--AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR----G---- 135 (342)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~----~---- 135 (342)
......+...+..|++.+|...+...++..+.... +.+++.+|.+|.. .+++++|+.+|++++.. +
T Consensus 10 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 10 LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFY----LHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHHHHhccccHH
Confidence 34556677778899999999999988887554221 4689999999998 58999999999999765 2
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC----CC----HHHHHHHHHHHHcCCccC--------------------H
Q 019340 136 STLAMVDAGLMYWEMDKKEAAISLYRQAAVL----GD----PAGQFNLGISYLQAQPAN--------------------A 187 (342)
Q Consensus 136 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----~~----~~a~~~Lg~~~~~g~~~~--------------------~ 187 (342)
.+.++..+|.+|...|++++|+.+|+++++. ++ ..++.++|.+|. ..++ +
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~~~~~~~~~~~~~~a~~~~ 163 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYH--AKGKSFGCPGPQDVGEFPEEVRDAL 163 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH--HHHHTCC-------CCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHH--HcCCcccccccchhhhhhhhHHHHH
Confidence 3567899999999999999999999999865 33 558999999999 7888 9
Q ss_pred HHHHHHHHHHHHc----C----CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC----CC----HHHHHHHHHHHHc
Q 019340 188 EEAVKLLYQASIA----G----HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG----GY----VRAMYNTSLCYSF 251 (342)
Q Consensus 188 ~~A~~~~~~a~~~----~----~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~----~~----~~a~~~lg~~y~~ 251 (342)
++|+.+|+++++. + ...++.++|.+|.. .+++++|+.+|+++++. ++ ..++.++|.+|..
T Consensus 164 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 239 (406)
T 3sf4_A 164 QAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYL----LGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIF 239 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----HTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Confidence 9999999998763 2 35678999999987 77999999999999864 22 3488999999965
Q ss_pred CCCCcccHHHHHHHHHHHHHc----CC----HHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCc------HHHHHHHHHHH
Q 019340 252 GEGLPLSHRQARKWMKRAADC----GH----GKAQLEHGLGLFTEGEMMKAVVYLELATRAGE------TAADHVKNVIL 317 (342)
Q Consensus 252 g~g~~~~~~~A~~~~~~a~~~----~~----~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~------~~a~~~~~~~~ 317 (342)
.| ++++|+.+|++++.. ++ ..++.++|.+|...|++++|..+|+++++... ..+........
T Consensus 240 -~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~ 315 (406)
T 3sf4_A 240 -LG---EFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGN 315 (406)
T ss_dssp -TT---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -cC---ChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 33 999999999999864 22 56789999999999999999999999987622 12334444455
Q ss_pred hhcChhcHHHHHHHHHhhhc
Q 019340 318 QQLSATSRDRAMLVVDSWRA 337 (342)
Q Consensus 318 ~~~~~~~~~~a~~~~~~~~~ 337 (342)
.+...++.++|...+++..+
T Consensus 316 ~~~~~g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 316 AYTALGNHDQAMHFAEKHLE 335 (406)
T ss_dssp HHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 55566889999888777543
No 45
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.80 E-value=4.1e-18 Score=151.68 Aligned_cols=225 Identities=16% Similarity=0.028 Sum_probs=185.9
Q ss_pred HHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHH
Q 019340 102 MVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGI 177 (342)
Q Consensus 102 ~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~ 177 (342)
..++.+|.++.. .+++++|+.+|+++++. +++.+++.+|.++...|++++|+.+|+++++. .++.+++.+|.
T Consensus 22 ~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 97 (327)
T 3cv0_A 22 ENPMEEGLSMLK----LANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAV 97 (327)
T ss_dssp SCHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHH----hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHH
Confidence 456788998888 58999999999999885 58899999999999999999999999999865 68999999999
Q ss_pred HHHcCCccCHHHHHHHHHHHHHcC--CHHHHHHH--------------HH-HHhcCCCCCCCHHHHHHHHHHHHHC--CC
Q 019340 178 SYLQAQPANAEEAVKLLYQASIAG--HVRAQYQL--------------AL-CLHRGRGVDFNLQEAARWYLRAAEG--GY 238 (342)
Q Consensus 178 ~~~~g~~~~~~~A~~~~~~a~~~~--~~~a~~~l--------------g~-~~~~g~~~~~~~~~A~~~~~~A~~~--~~ 238 (342)
+|. ..+++++|+.+|+++++.. +...+..+ |. ++.. .+++++|+.+|+++++. .+
T Consensus 98 ~~~--~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~~~~ 171 (327)
T 3cv0_A 98 SHT--NEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAA----PNEYRECRTLLHAALEMNPND 171 (327)
T ss_dssp HHH--HTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTS----HHHHHHHHHHHHHHHHHSTTC
T ss_pred HHH--HcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHH----cccHHHHHHHHHHHHhhCCCC
Confidence 999 8999999999999998753 44444444 44 3443 66899999999999876 57
Q ss_pred HHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCcHHHHHHHHHH
Q 019340 239 VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVI 316 (342)
Q Consensus 239 ~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~~~~~ 316 (342)
+.+++.+|.+|.. .+++++|+.+++++++. ++..++..+|.++...|++++|+.+|+++++..+.+........
T Consensus 172 ~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~ 247 (327)
T 3cv0_A 172 AQLHASLGVLYNL----SNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMA 247 (327)
T ss_dssp HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHH----hccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 8999999999965 33999999999999886 56889999999999999999999999999998765444444455
Q ss_pred HhhcChhcHHHHHHHHHhhhcCCC
Q 019340 317 LQQLSATSRDRAMLVVDSWRAMPS 340 (342)
Q Consensus 317 ~~~~~~~~~~~a~~~~~~~~~~~~ 340 (342)
..+...++.++|...+++..+..|
T Consensus 248 ~~~~~~g~~~~A~~~~~~a~~~~~ 271 (327)
T 3cv0_A 248 VSYSNMSQYDLAAKQLVRAIYMQV 271 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHhccHHHHHHHHHHHHHhCC
Confidence 555666899999999888766554
No 46
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.80 E-value=2.6e-18 Score=162.62 Aligned_cols=191 Identities=17% Similarity=0.052 Sum_probs=111.8
Q ss_pred CHHHHHHHHHHHHcCCCCcCCH-HHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC-CCHHHHHHH
Q 019340 100 EAMVLLRWGKRFKHGRGVRKNL-DKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL-GDPAGQFNL 175 (342)
Q Consensus 100 ~a~a~~~lg~~y~~g~g~~~~~-~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-~~~~a~~~L 175 (342)
++.+++.+|.+|.. .+++ ++|+.+|+++++. +++.+++.+|.+|...|++++|+.+|+++++. .++.+++++
T Consensus 101 ~a~~~~~lg~~~~~----~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~l 176 (474)
T 4abn_A 101 EAQALMLKGKALNV----TPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNL 176 (474)
T ss_dssp CHHHHHHHHHHHTS----SSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred hHHHHHHHHHHHHh----ccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCHHHHHHH
Confidence 56666666666665 3566 6666666666654 35666666666666666666666666666654 225666666
Q ss_pred HHHHHcCCc---------cCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcC----CCCCCCHHHHHHHHHHHHHC----
Q 019340 176 GISYLQAQP---------ANAEEAVKLLYQASIA--GHVRAQYQLALCLHRG----RGVDFNLQEAARWYLRAAEG---- 236 (342)
Q Consensus 176 g~~~~~g~~---------~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g----~~~~~~~~~A~~~~~~A~~~---- 236 (342)
|.+|. .. +++++|+.+|+++++. +++.+++++|.+|..- ....+++++|+.+|++|++.
T Consensus 177 g~~~~--~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~ 254 (474)
T 4abn_A 177 SMVLR--QLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKA 254 (474)
T ss_dssp HHHHT--TCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGG
T ss_pred HHHHH--HhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCc
Confidence 66666 55 6666666666666553 4566666666666530 00014566666666666552
Q ss_pred -CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhhcCCHHHHHHHHHH
Q 019340 237 -GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLEL 300 (342)
Q Consensus 237 -~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~ 300 (342)
+++.+++++|.+|.. .| ++++|+.+|+++++. ++..++.+++.++...|++++|+..+.+
T Consensus 255 ~~~~~~~~~lg~~~~~-~g---~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 255 SSNPDLHLNRATLHKY-EE---SYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp GGCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred ccCHHHHHHHHHHHHH-cC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 345566666666643 22 666666666666554 4455566666666666666666655443
No 47
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.80 E-value=1.2e-17 Score=148.45 Aligned_cols=259 Identities=15% Similarity=0.053 Sum_probs=206.9
Q ss_pred HHHHHHhhCCChhHHhhHHHHHHHHHHhCcCCC--HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC----C----CH
Q 019340 68 VLNKIAASFTLPQLRAASLVCKSWNDALRPLRE--AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR----G----ST 137 (342)
Q Consensus 68 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~----~----~~ 137 (342)
....+...+..|++.+|...+...++..+.... +.+++.+|.+|.. .+++++|+.+|++++.. + .+
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~ 83 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFY----LHDYAKALEYHHHDLTLARTIGDQLGEA 83 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHhhcccccHHHH
Confidence 445566677889999999999988887544211 5788899999998 58999999999999875 2 35
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHhC----CC----HHHHHHHHHHHHcCCccC--------------------HHH
Q 019340 138 LAMVDAGLMYWEMDKKEAAISLYRQAAVL----GD----PAGQFNLGISYLQAQPAN--------------------AEE 189 (342)
Q Consensus 138 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----~~----~~a~~~Lg~~~~~g~~~~--------------------~~~ 189 (342)
.++..+|.+|...|++++|+.+|+++++. ++ ..++..+|.+|. ..++ +++
T Consensus 84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~a~~~~~~ 161 (338)
T 3ro2_A 84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYH--AKGKSFGCPGPQDTGEFPEDVRNALQA 161 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--HHHHTSSSSSCC----CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHH--HcCcccccchhhhhhhhhhhHHHHHHH
Confidence 67889999999999999999999999854 33 458899999999 7778 999
Q ss_pred HHHHHHHHHHc----C----CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC----CC----HHHHHHHHHHHHcCC
Q 019340 190 AVKLLYQASIA----G----HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG----GY----VRAMYNTSLCYSFGE 253 (342)
Q Consensus 190 A~~~~~~a~~~----~----~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~----~~----~~a~~~lg~~y~~g~ 253 (342)
|+.+|++++.. + ...++.++|.+|.. .+++++|+.+|+++++. ++ ..++.++|.+|..
T Consensus 162 A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~-- 235 (338)
T 3ro2_A 162 AVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYL----LGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIF-- 235 (338)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH--
Confidence 99999998753 2 35688999999987 77999999999999864 22 3488999999965
Q ss_pred CCcccHHHHHHHHHHHHHc----CC----HHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCcH------HHHHHHHHHHhh
Q 019340 254 GLPLSHRQARKWMKRAADC----GH----GKAQLEHGLGLFTEGEMMKAVVYLELATRAGET------AADHVKNVILQQ 319 (342)
Q Consensus 254 g~~~~~~~A~~~~~~a~~~----~~----~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~------~a~~~~~~~~~~ 319 (342)
.+++++|+.++++++.. ++ ..++..+|.+|...|++++|..+|+++++..+. .+.....+...+
T Consensus 236 --~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~ 313 (338)
T 3ro2_A 236 --LGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAY 313 (338)
T ss_dssp --HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred --cCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence 34999999999999864 22 567899999999999999999999999876322 233344455555
Q ss_pred cChhcHHHHHHHHHhhhcCCC
Q 019340 320 LSATSRDRAMLVVDSWRAMPS 340 (342)
Q Consensus 320 ~~~~~~~~a~~~~~~~~~~~~ 340 (342)
...++.++|...+++..+..+
T Consensus 314 ~~~g~~~~A~~~~~~a~~~~~ 334 (338)
T 3ro2_A 314 TALGNHDQAMHFAEKHLEISR 334 (338)
T ss_dssp HHHTCHHHHHHHHHHHHHC--
T ss_pred HHcCChHHHHHHHHHHHHHHH
Confidence 667899999999988776544
No 48
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.80 E-value=3.1e-18 Score=162.08 Aligned_cols=209 Identities=14% Similarity=0.035 Sum_probs=172.4
Q ss_pred CCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCH-HHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHH
Q 019340 119 KNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKK-EAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKL 193 (342)
Q Consensus 119 ~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~-~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~ 193 (342)
+.+++++..+...... .++.+++.+|.+|...|++ ++|+.+|+++++. +++.++++||.+|. ..+++++|+.+
T Consensus 82 ~~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~--~~g~~~~A~~~ 159 (474)
T 4abn_A 82 EEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYW--KKGDVTSAHTC 159 (474)
T ss_dssp HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH--HHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH--HcCCHHHHHHH
Confidence 3467788888877664 4889999999999999999 9999999999865 78999999999999 89999999999
Q ss_pred HHHHHHcC-CHHHHHHHHHHHhcC-CCCC----CCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcC-----CCCcccHH
Q 019340 194 LYQASIAG-HVRAQYQLALCLHRG-RGVD----FNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFG-----EGLPLSHR 260 (342)
Q Consensus 194 ~~~a~~~~-~~~a~~~lg~~~~~g-~~~~----~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g-----~g~~~~~~ 260 (342)
|+++++.. ++.+++++|.+|..- .+.. +++++|+.+|+++++. +++.+++++|.+|... . ..++++
T Consensus 160 ~~~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~-~~g~~~ 238 (474)
T 4abn_A 160 FSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQ-NPKISQ 238 (474)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTC-CHHHHH
T ss_pred HHHHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhcc-ccchHH
Confidence 99999864 479999999999871 1111 7899999999999886 6899999999999641 1 115899
Q ss_pred HHHHHHHHHHHc-----CCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCc--HHHHHHHHHHHhhcChhcHHHHHHHH
Q 019340 261 QARKWMKRAADC-----GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGE--TAADHVKNVILQQLSATSRDRAMLVV 332 (342)
Q Consensus 261 ~A~~~~~~a~~~-----~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~--~~a~~~~~~~~~~~~~~~~~~a~~~~ 332 (342)
+|+.+|+++++. +++.+++++|.+|...|++++|+.+|+++++..+ ..+...++.++..+ ++.++|....
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~l--g~~~eAi~~~ 315 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFL--SRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH--HHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH--HHHHHHHHHh
Confidence 999999999874 5689999999999999999999999999999865 44555555555444 5666666533
No 49
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.79 E-value=2.5e-18 Score=169.79 Aligned_cols=162 Identities=17% Similarity=0.062 Sum_probs=96.7
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHH
Q 019340 136 STLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLAL 211 (342)
Q Consensus 136 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~ 211 (342)
+++++++||.+|...|++++|+.+|++|++. +++.++++||.+|. ..|++++|+.+|+++++. ++++++++||.
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~--~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQ--QQGKLQEALMHYKEAIRISPTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 3455555555555555555555555555533 45555555555555 555555555555555442 35555555555
Q ss_pred HHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhh
Q 019340 212 CLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFT 287 (342)
Q Consensus 212 ~~~~g~~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~ 287 (342)
+|.. .+++++|+.+|++|++. +++.+++++|.+|.. .| ++++|+.+|++|++. +++.++.+||.+|..
T Consensus 86 ~l~~----~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~-~g---~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~ 157 (723)
T 4gyw_A 86 TLKE----MQDVQGALQCYTRAIQINPAFADAHSNLASIHKD-SG---NIPEAIASYRTALKLKPDFPDAYCNLAHCLQI 157 (723)
T ss_dssp HHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH
T ss_pred HHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cC---CHHHHHHHHHHHHHhCCCChHHHhhhhhHHHh
Confidence 5555 44556666666655553 355666666666643 22 666777777776654 456777777777777
Q ss_pred cCCHHHHHHHHHHHHHcCcH
Q 019340 288 EGEMMKAVVYLELATRAGET 307 (342)
Q Consensus 288 ~~~~~~A~~~~~~a~~~~~~ 307 (342)
.|++++|..+|+++++..+.
T Consensus 158 ~g~~~~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 158 VCDWTDYDERMKKLVSIVAD 177 (723)
T ss_dssp TTCCTTHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhChh
Confidence 77777777777777665433
No 50
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.79 E-value=5e-17 Score=136.62 Aligned_cols=196 Identities=12% Similarity=0.048 Sum_probs=172.9
Q ss_pred CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHH
Q 019340 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNL 175 (342)
Q Consensus 100 ~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~L 175 (342)
++.+++.+|.++.. .+++++|+.+|+++++. +++.+++.+|.+|...|++++|+.+|+++++. .++.++..+
T Consensus 7 ~~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 82 (225)
T 2vq2_A 7 VSNIKTQLAMEYMR----GQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNY 82 (225)
T ss_dssp HHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHH----HhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHH
Confidence 57788999999998 58999999999999986 47899999999999999999999999999865 688999999
Q ss_pred HHHHHcCCc-cCHHHHHHHHHHHHH----cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHH
Q 019340 176 GISYLQAQP-ANAEEAVKLLYQASI----AGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLC 248 (342)
Q Consensus 176 g~~~~~g~~-~~~~~A~~~~~~a~~----~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~ 248 (342)
|.++. .. +++++|+.+|+++++ +.++.+++.+|.++.. .+++++|+.+|+++++. .++.+++.+|.+
T Consensus 83 ~~~~~--~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 156 (225)
T 2vq2_A 83 GWFLC--GRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAK----QGQFGLAEAYLKRSLAAQPQFPPAFKELART 156 (225)
T ss_dssp HHHHH--TTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHH--HhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCchHHHHHHHH
Confidence 99999 88 999999999999988 2347899999999988 77999999999999876 578999999999
Q ss_pred HHcCCCCcccHHHHHHHHHHHHHc---CCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCcHHH
Q 019340 249 YSFGEGLPLSHRQARKWMKRAADC---GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAA 309 (342)
Q Consensus 249 y~~g~g~~~~~~~A~~~~~~a~~~---~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~~a 309 (342)
|.. .+++++|+.+|++++.. .+...+..++.++...|+.++|..+++.+....+.+.
T Consensus 157 ~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 216 (225)
T 2vq2_A 157 KML----AGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSE 216 (225)
T ss_dssp HHH----HTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHH----cCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCH
Confidence 965 33999999999999874 5678888888999999999999999999987755433
No 51
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.79 E-value=8e-18 Score=146.28 Aligned_cols=237 Identities=14% Similarity=0.022 Sum_probs=185.2
Q ss_pred CCChhHHhhHHHHHHHHHHhCc--CCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCC
Q 019340 76 FTLPQLRAASLVCKSWNDALRP--LREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMD 151 (342)
Q Consensus 76 ~~~~~~~~a~~~~~~~~~~~~~--~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~ 151 (342)
...+++.+|...+....+..+. ..++.+++.+|.+|.. .+++++|+.+|+++++. .++.+++.+|.+|...|
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~ 91 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDS----LGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAG 91 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTT
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHH----cccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcc
Confidence 3557888888877777765321 2357899999999999 58999999999999986 47999999999999999
Q ss_pred CHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCCCCHHHHH
Q 019340 152 KKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAA 227 (342)
Q Consensus 152 ~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~ 227 (342)
++++|+.+|+++++. +++.+++.+|.+|. ..+++++|+.+|+++++. .++.....++.++. .+++++|+
T Consensus 92 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~--~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~-----~~~~~~A~ 164 (275)
T 1xnf_A 92 NFDAAYEAFDSVLELDPTYNYAHLNRGIALY--YGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQ-----KLDEKQAK 164 (275)
T ss_dssp CHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-----HHCHHHHH
T ss_pred CHHHHHHHHHHHHhcCccccHHHHHHHHHHH--HhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHH-----hcCHHHHH
Confidence 999999999999875 67999999999999 899999999999999875 46666666665544 45899999
Q ss_pred HHHHHHHHCC--CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCC------HHHHHHHHHHhhhcCCHHHHHHHHH
Q 019340 228 RWYLRAAEGG--YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGH------GKAQLEHGLGLFTEGEMMKAVVYLE 299 (342)
Q Consensus 228 ~~~~~A~~~~--~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~------~~a~~~Lg~~~~~~~~~~~A~~~~~ 299 (342)
.+|++++... +... +.++.++. +.+ +.++|+..+++++.... ..+++.+|.+|...|++++|+.+|+
T Consensus 165 ~~~~~~~~~~~~~~~~-~~~~~~~~-~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 239 (275)
T 1xnf_A 165 EVLKQHFEKSDKEQWG-WNIVEFYL-GNI---SEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFK 239 (275)
T ss_dssp HHHHHHHHHSCCCSTH-HHHHHHHT-TSS---CHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhcCCcchHH-HHHHHHHH-Hhc---CHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999988753 3333 34555553 333 67899999999976533 6788999999999999999999999
Q ss_pred HHHHcCcHHHHHHHHHHHhhcChhcHHHHHHH
Q 019340 300 LATRAGETAADHVKNVILQQLSATSRDRAMLV 331 (342)
Q Consensus 300 ~a~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~ 331 (342)
++++..+.+.... ... ....++.++|...
T Consensus 240 ~al~~~p~~~~~~-~~~--~~~l~~~~~a~~~ 268 (275)
T 1xnf_A 240 LAVANNVHNFVEH-RYA--LLELSLLGQDQDD 268 (275)
T ss_dssp HHHTTCCTTCHHH-HHH--HHHHHHHHHC---
T ss_pred HHHhCCchhHHHH-HHH--HHHHHHHHhhHHH
Confidence 9999876443322 222 2233556666554
No 52
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.78 E-value=9.7e-17 Score=136.28 Aligned_cols=200 Identities=14% Similarity=0.132 Sum_probs=162.7
Q ss_pred CCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC---CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHH
Q 019340 98 LREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR---GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQ 172 (342)
Q Consensus 98 ~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~---~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~ 172 (342)
..++.+++.+|.+|.. .+++++|+.+|+++++. .+..+++.+|.++...|++++|+.+|+++++. +++.++
T Consensus 4 ~~~~~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 79 (228)
T 4i17_A 4 TTDPNQLKNEGNDALN----AKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAY 79 (228)
T ss_dssp CCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHH
T ss_pred ccCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHH
Confidence 3478899999999999 59999999999999985 47788999999999999999999999999976 678999
Q ss_pred HHHHHHHHcCCccCHHHHHHHHHHHHHc--CCH-------HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCC----H
Q 019340 173 FNLGISYLQAQPANAEEAVKLLYQASIA--GHV-------RAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGY----V 239 (342)
Q Consensus 173 ~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~-------~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~~~----~ 239 (342)
+.+|.+|. ..+++++|+.+|+++++. +++ .+++++|.++.. .+++++|+.+|+++++... +
T Consensus 80 ~~l~~~~~--~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~p~~~~~ 153 (228)
T 4i17_A 80 IGKSAAYR--DMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQ----AGNIEKAEENYKHATDVTSKKWKT 153 (228)
T ss_dssp HHHHHHHH--HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHTTSSCHHHHH
T ss_pred HHHHHHHH--HcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHH----hccHHHHHHHHHHHHhcCCCcccH
Confidence 99999999 899999999999999884 566 679999999987 7899999999999998754 4
Q ss_pred HHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCcH--HHHHHHHHH
Q 019340 240 RAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGET--AADHVKNVI 316 (342)
Q Consensus 240 ~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~--~a~~~~~~~ 316 (342)
.+++++|.+|.. .+...+.++............+......+.+++|+.+|+++++..|. ++...+..+
T Consensus 154 ~~~~~l~~~~~~---------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i 223 (228)
T 4i17_A 154 DALYSLGVLFYN---------NGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQV 223 (228)
T ss_dssp HHHHHHHHHHHH---------HHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---------HHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence 789999999953 34455666666543223333444455677899999999999998654 444444333
No 53
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.77 E-value=7e-17 Score=135.73 Aligned_cols=197 Identities=14% Similarity=0.031 Sum_probs=167.3
Q ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHH
Q 019340 135 GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLA 210 (342)
Q Consensus 135 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg 210 (342)
+++.+++.+|.++...|++++|+.+|+++++. +++.+++.+|.++. ..+++++|+.+|+++++. .++.++..+|
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~ 83 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQ--YLKVNDKAQESFRQALSIKPDSAEINNNYG 83 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHH--HcCChHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 35778899999999999999999999999865 67999999999999 889999999999999874 5899999999
Q ss_pred HHHhcCCCCC-CCHHHHHHHHHHHHH--C--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHH
Q 019340 211 LCLHRGRGVD-FNLQEAARWYLRAAE--G--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGL 283 (342)
Q Consensus 211 ~~~~~g~~~~-~~~~~A~~~~~~A~~--~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~ 283 (342)
.+|.. . +++++|+.+|+++++ . .+..+++.+|.+|.. .| ++++|+.+|+++++. .+..++..+|.
T Consensus 84 ~~~~~----~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~---~~~~A~~~~~~~~~~~~~~~~~~~~la~ 155 (225)
T 2vq2_A 84 WFLCG----RLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAK-QG---QFGLAEAYLKRSLAAQPQFPPAFKELAR 155 (225)
T ss_dssp HHHHT----TTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHH----hcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHH-cC---CHHHHHHHHHHHHHhCCCCchHHHHHHH
Confidence 99987 7 799999999999998 3 347889999999965 33 999999999999886 56899999999
Q ss_pred HhhhcCCHHHHHHHHHHHHHcCc-HHHHHHHHHHHhhcChhcHHHHHHHHHhhhcCCCC
Q 019340 284 GLFTEGEMMKAVVYLELATRAGE-TAADHVKNVILQQLSATSRDRAMLVVDSWRAMPSL 341 (342)
Q Consensus 284 ~~~~~~~~~~A~~~~~~a~~~~~-~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 341 (342)
++...|++++|..+|+++++..+ ................++.+.+....+.+.+..|.
T Consensus 156 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~ 214 (225)
T 2vq2_A 156 TKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPY 214 (225)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC
Confidence 99999999999999999998755 33333333444445567888898888888765554
No 54
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.77 E-value=9.8e-18 Score=165.59 Aligned_cols=160 Identities=17% Similarity=0.136 Sum_probs=147.1
Q ss_pred CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHH
Q 019340 99 REAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFN 174 (342)
Q Consensus 99 ~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~ 174 (342)
.++.++++||.+|.. .|++++|+.+|++|++. +++.++++||.+|...|++++|+.+|++|++. ++++++++
T Consensus 7 ~~a~al~nLG~~~~~----~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~n 82 (723)
T 4gyw_A 7 THADSLNNLANIKRE----QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSN 82 (723)
T ss_dssp HHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 478999999999999 69999999999999986 58999999999999999999999999999865 78999999
Q ss_pred HHHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH
Q 019340 175 LGISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYS 250 (342)
Q Consensus 175 Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~ 250 (342)
||.+|. ..+++++|+.+|+++++. ++++++++||.+|.. .+++++|+.+|++|++. +++.++++||.+|.
T Consensus 83 Lg~~l~--~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~----~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~ 156 (723)
T 4gyw_A 83 MGNTLK--EMQDVQGALQCYTRAIQINPAFADAHSNLASIHKD----SGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQ 156 (723)
T ss_dssp HHHHHH--HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH
T ss_pred HHHHHH--HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHH
Confidence 999999 899999999999999874 689999999999998 78999999999999986 68999999999996
Q ss_pred cCCCCcccHHHHHHHHHHHHHc
Q 019340 251 FGEGLPLSHRQARKWMKRAADC 272 (342)
Q Consensus 251 ~g~g~~~~~~~A~~~~~~a~~~ 272 (342)
. .| ++++|.++|+++++.
T Consensus 157 ~-~g---~~~~A~~~~~kal~l 174 (723)
T 4gyw_A 157 I-VC---DWTDYDERMKKLVSI 174 (723)
T ss_dssp H-TT---CCTTHHHHHHHHHHH
T ss_pred h-cc---cHHHHHHHHHHHHHh
Confidence 5 33 899999999998764
No 55
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.77 E-value=4.3e-17 Score=140.13 Aligned_cols=195 Identities=18% Similarity=0.129 Sum_probs=168.7
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHH
Q 019340 137 TLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLALC 212 (342)
Q Consensus 137 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~ 212 (342)
+.+++.+|.++...|++++|+.+|+++++. +++.+++.+|.+|. ..+++++|+.+|+++++. .++.+++.+|.+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~--~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQ--TEMEPKLADEEYRKALASDSRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHH
Confidence 567889999999999999999999999865 68999999999999 889999999999999875 588999999999
Q ss_pred HhcCCCCCCCHHHHHHHHHHHHH--C--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhh
Q 019340 213 LHRGRGVDFNLQEAARWYLRAAE--G--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLF 286 (342)
Q Consensus 213 ~~~g~~~~~~~~~A~~~~~~A~~--~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~ 286 (342)
|.. .+++++|+.+|++++. . .+..+++.+|.+|.. .| ++++|+.+|+++++. .+..+++.+|.++.
T Consensus 115 ~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~-~g---~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 186 (252)
T 2ho1_A 115 LYE----QKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQ-MK---KPAQAKEYFEKSLRLNRNQPSVALEMADLLY 186 (252)
T ss_dssp HHH----TTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH
T ss_pred HHH----HhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHH-cC---CHHHHHHHHHHHHhcCcccHHHHHHHHHHHH
Confidence 988 7799999999999988 3 467889999999965 33 999999999999886 56889999999999
Q ss_pred hcCCHHHHHHHHHHHHHcCcHHHHHHHHHHHhhcChhcHHHHHHHHHhhhcCCCC
Q 019340 287 TEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPSL 341 (342)
Q Consensus 287 ~~~~~~~A~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 341 (342)
..|++++|..+|+++++..+............+...++.++|...++++.+..|.
T Consensus 187 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~ 241 (252)
T 2ho1_A 187 KEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPG 241 (252)
T ss_dssp HTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC
Confidence 9999999999999999886544444444444445568999999999998877664
No 56
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.77 E-value=7.8e-17 Score=151.45 Aligned_cols=212 Identities=13% Similarity=-0.030 Sum_probs=168.9
Q ss_pred CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC-----------CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC-
Q 019340 99 REAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR-----------GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL- 166 (342)
Q Consensus 99 ~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~-----------~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~- 166 (342)
..+..+..||.+|.. .|++++|+++|++|++. ....++.++|.+|...|++++|+.+|+++++.
T Consensus 49 ~~a~~yn~Lg~~~~~----~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~ 124 (472)
T 4g1t_A 49 FKATMCNLLAYLKHL----KGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVC 124 (472)
T ss_dssp -CCHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 346778889999998 68999999999999864 24567889999999999999999999999742
Q ss_pred ---------CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHH--cCCHHHHHHHHHHHhc-CCCCCCCHHHHHHHHHHHH
Q 019340 167 ---------GDPAGQFNLGISYLQAQPANAEEAVKLLYQASI--AGHVRAQYQLALCLHR-GRGVDFNLQEAARWYLRAA 234 (342)
Q Consensus 167 ---------~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~-g~~~~~~~~~A~~~~~~A~ 234 (342)
..+..+.++|.++..-..+++++|+.+|+++++ +++++++..+|.++.. +. .++.++|+..|++|+
T Consensus 125 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~--~~~~~~al~~~~~al 202 (472)
T 4g1t_A 125 EKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDN--WPPSQNAIDPLRQAI 202 (472)
T ss_dssp HHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH--SCCCCCTHHHHHHHH
T ss_pred HhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC--chHHHHHHHHHHHHh
Confidence 457889999987764245689999999999987 5689999999988642 11 346678999999998
Q ss_pred HC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCcHH--
Q 019340 235 EG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETA-- 308 (342)
Q Consensus 235 ~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~~-- 308 (342)
+. .++.++.++|..+..-.....++++|..+|++++.. .+..++.++|.+|...|++++|+.+|+++++..|..
T Consensus 203 ~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~ 282 (472)
T 4g1t_A 203 RLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAY 282 (472)
T ss_dssp HHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH
T ss_pred hcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHH
Confidence 76 578889999987754332355899999999999876 668899999999999999999999999999987544
Q ss_pred HHHHHHHH
Q 019340 309 ADHVKNVI 316 (342)
Q Consensus 309 a~~~~~~~ 316 (342)
+...++.+
T Consensus 283 ~~~~lg~~ 290 (472)
T 4g1t_A 283 LHCQIGCC 290 (472)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444443
No 57
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.76 E-value=1.1e-16 Score=146.93 Aligned_cols=223 Identities=11% Similarity=0.041 Sum_probs=128.5
Q ss_pred HHHhhCCChhHHhhHHHHHHHHHHhCcCC----CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC----C-----CH
Q 019340 71 KIAASFTLPQLRAASLVCKSWNDALRPLR----EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR----G-----ST 137 (342)
Q Consensus 71 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~----~-----~~ 137 (342)
++...+..|++.+|...+....+.....+ .+.+++.+|.+|.. .+++++|+.+|++|++. + .+
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 184 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYY----MKQTYFSMDYARQAYEIYKEHEAYNIRLL 184 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHTCSTTHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHhCccchHHHH
Confidence 33334556666666666655555433333 23566666766666 46667777777766653 1 13
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHhC----CC----HHHHHHHHHHHHcCCccCHHHHHHHHHHHHH--------cC
Q 019340 138 LAMVDAGLMYWEMDKKEAAISLYRQAAVL----GD----PAGQFNLGISYLQAQPANAEEAVKLLYQASI--------AG 201 (342)
Q Consensus 138 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----~~----~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~--------~~ 201 (342)
.++.++|.+|...|++++|+.+|+++++. ++ ..++.+||.+|. ..+++++|+.+|+++++ +.
T Consensus 185 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~--~~g~~~~A~~~~~~al~~~~~~~~~~~ 262 (383)
T 3ulq_A 185 QCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKN--SQSQYEDAIPYFKRAIAVFEESNILPS 262 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHTTCGGG
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHHHHHhhccchh
Confidence 45666677776667777777777666643 22 236666666666 66667777777776665 22
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC----CCHH---HHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc-C
Q 019340 202 HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG----GYVR---AMYNTSLCYSFGEGLPLSHRQARKWMKRAADC-G 273 (342)
Q Consensus 202 ~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~----~~~~---a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~-~ 273 (342)
.+.+++++|.+|.. .+++++|+.+|+++++. +++. .+..+|.+|.. .|-.....+|+.++++.-.. .
T Consensus 263 ~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~al~~~~~~~~~~~ 337 (383)
T 3ulq_A 263 LPQAYFLITQIHYK----LGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLS-GPDEEAIQGFFDFLESKMLYAD 337 (383)
T ss_dssp HHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTS-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCcCHHH
Confidence 45566666766665 55667777777666653 2221 23456666633 22112255666666555211 1
Q ss_pred CHHHHHHHHHHhhhcCCHHHHHHHHHHHHHc
Q 019340 274 HGKAQLEHGLGLFTEGEMMKAVVYLELATRA 304 (342)
Q Consensus 274 ~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~ 304 (342)
...++..||.+|...|++++|..+|+++++.
T Consensus 338 ~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 338 LEDFAIDVAKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 2345566677777777777777777666653
No 58
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.76 E-value=5.6e-17 Score=152.45 Aligned_cols=258 Identities=14% Similarity=0.008 Sum_probs=168.8
Q ss_pred hCCChhHHhhHHHHHHHHHHh-------CcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC----------CCH
Q 019340 75 SFTLPQLRAASLVCKSWNDAL-------RPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR----------GST 137 (342)
Q Consensus 75 ~~~~~~~~~a~~~~~~~~~~~-------~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~----------~~~ 137 (342)
.+..|++.+|...+.+..+.. .+...+.++.++|.+|.. .+++++|+.+|+++.+. ..+
T Consensus 61 ~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~----~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~ 136 (472)
T 4g1t_A 61 KHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYH----MGRLSDVQIYVDKVKHVCEKFSSPYRIESP 136 (472)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHSCCSSCCCCH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHhHhcccccchhhH
Confidence 456788999988777776542 233456788899999988 58999999999998763 256
Q ss_pred HHHHHHHHHHhc--CCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHc-CCccCHH------------------------
Q 019340 138 LAMVDAGLMYWE--MDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQ-AQPANAE------------------------ 188 (342)
Q Consensus 138 ~a~~~lg~~~~~--~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~-g~~~~~~------------------------ 188 (342)
.++.++|..+.. .+++++|+.+|+++++. ++++++..+|.++.. +..++.+
T Consensus 137 ~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~ 216 (472)
T 4g1t_A 137 ELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLA 216 (472)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHH
Confidence 777777765543 46899999999998754 778888877776542 2233334
Q ss_pred --------------HHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH
Q 019340 189 --------------EAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYS 250 (342)
Q Consensus 189 --------------~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~ 250 (342)
+|+.+|++++.. .++.++.++|.+|.. .+++++|+..|++|++. .++.+++++|.+|.
T Consensus 217 ~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~ 292 (472)
T 4g1t_A 217 LKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRR----KDEPDKAIELLKKALEYIPNNAYLHCQIGCCYR 292 (472)
T ss_dssp HHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHH----cCchHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Confidence 444445444432 345555555555555 45566666666666554 45566666666653
Q ss_pred cC-----------CC----CcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCcHHH----
Q 019340 251 FG-----------EG----LPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAA---- 309 (342)
Q Consensus 251 ~g-----------~g----~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~~a---- 309 (342)
.. .+ ....+++|+.+|+++++. .+..+++++|.+|...|++++|+.+|+++++..+.+.
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~ 372 (472)
T 4g1t_A 293 AKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQL 372 (472)
T ss_dssp HHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHH
Confidence 10 00 012355666666666554 3355667888888889999999999999998754322
Q ss_pred -HHHHHHHHhhcChhcHHHHHHHHHhhhcCCCC
Q 019340 310 -DHVKNVILQQLSATSRDRAMLVVDSWRAMPSL 341 (342)
Q Consensus 310 -~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 341 (342)
...++.+. ....++.++|+..+++..+..|.
T Consensus 373 ~~~~~~~~~-~~~~~~~~~Ai~~y~kal~i~~~ 404 (472)
T 4g1t_A 373 LHLRYGNFQ-LYQMKCEDKAIHHFIEGVKINQK 404 (472)
T ss_dssp HHHHHHHHH-HHTSSCHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHH-HHHCCCHHHHHHHHHHHHhcCcc
Confidence 22333332 23567889999998888777664
No 59
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.76 E-value=5.1e-17 Score=138.49 Aligned_cols=206 Identities=17% Similarity=0.218 Sum_probs=162.9
Q ss_pred HHHHHHHhhCCChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHH
Q 019340 67 DVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAG 144 (342)
Q Consensus 67 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg 144 (342)
.....+...+..+++.+|...+....+..+ .++.+++.+|.+|.. .+++++|+.+|+++++. .+..++..+|
T Consensus 25 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~--~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~la 98 (243)
T 2q7f_A 25 TGGQQMGRGSEFGDYEKAAEAFTKAIEENK--EDAIPYINFANLLSS----VNELERALAFYDKALELDSSAATAYYGAG 98 (243)
T ss_dssp -----------------CCTTHHHHHTTCT--TCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhCc--ccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCcchHHHHHHH
Confidence 344555566788999999887777776544 378999999999998 58999999999999986 4889999999
Q ss_pred HHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCC
Q 019340 145 LMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVD 220 (342)
Q Consensus 145 ~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~ 220 (342)
.++...|++++|+.+|+++++. .++.+++.+|.++. ..+++++|+.+|+++++. .++.+++.+|.++.. .
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~--~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~ 172 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLV--KLEQPKLALPYLQRAVELNENDTEARFQFGMCLAN----E 172 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHH--HTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----H
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH--HhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH----c
Confidence 9999999999999999999865 68999999999999 889999999999999875 589999999999987 7
Q ss_pred CCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhhc
Q 019340 221 FNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTE 288 (342)
Q Consensus 221 ~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~ 288 (342)
+++++|+.+|++++.. .++.+++.+|.+|.. .+++++|+.+|+++++. ++..++..++.+....
T Consensus 173 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~ 240 (243)
T 2q7f_A 173 GMLDEALSQFAAVTEQDPGHADAFYNAGVTYAY----KENREKALEMLDKAIDIQPDHMLALHAKKLLGHHH 240 (243)
T ss_dssp TCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCTTHHHHHHHHHHHHCTTCHHHHHHHTC-----
T ss_pred CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH----ccCHHHHHHHHHHHHccCcchHHHHHHHHHHHhhc
Confidence 7899999999999886 578899999999965 33999999999999886 5678888777765443
No 60
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.76 E-value=8.9e-17 Score=142.34 Aligned_cols=218 Identities=15% Similarity=0.059 Sum_probs=178.3
Q ss_pred HHhhCCChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC----CCHHHHHHHHHHH
Q 019340 72 IAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR----GSTLAMVDAGLMY 147 (342)
Q Consensus 72 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~----~~~~a~~~lg~~~ 147 (342)
+...+..|++..|...+.. ...+...++..++..+.. .++.++|+..+++.+.. +++.+++.+|.++
T Consensus 41 ~r~yi~~g~~~~al~~~~~-----~~~~~~~a~~~la~~~~~----~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~ 111 (291)
T 3mkr_A 41 YRAYLAQRKYGVVLDEIKP-----SSAPELQAVRMFAEYLAS----HSRRDAIVAELDREMSRSVDVTNTTFLLMAASIY 111 (291)
T ss_dssp HHHHHHTTCHHHHHHHSCT-----TSCHHHHHHHHHHHHHHC----STTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHhcc-----cCChhHHHHHHHHHHHcC----CCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHH
Confidence 4455677888888644322 233456788888988887 48999999999998864 4889999999999
Q ss_pred hcCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHcCCHHHHHHHHH----HHhcCCCCCCCH
Q 019340 148 WEMDKKEAAISLYRQAAVLGDPAGQFNLGISYLQAQPANAEEAVKLLYQASIAGHVRAQYQLAL----CLHRGRGVDFNL 223 (342)
Q Consensus 148 ~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~----~~~~g~~~~~~~ 223 (342)
...|++++|+.+|++ .++++++..+|.+|. ..|++++|+..|+++++........+++. ++.. .+++
T Consensus 112 ~~~g~~~~Al~~l~~---~~~~~~~~~l~~~~~--~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~----~~~~ 182 (291)
T 3mkr_A 112 FYDQNPDAALRTLHQ---GDSLECMAMTVQILL--KLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAG----GEKL 182 (291)
T ss_dssp HHTTCHHHHHHHHTT---CCSHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC----TTHH
T ss_pred HHCCCHHHHHHHHhC---CCCHHHHHHHHHHHH--HCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhC----chHH
Confidence 999999999999999 789999999999999 89999999999999987643233334332 2222 4689
Q ss_pred HHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhhcCCHHH-HHHHH
Q 019340 224 QEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMK-AVVYL 298 (342)
Q Consensus 224 ~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~-A~~~~ 298 (342)
++|+..|+++++. .++.+++++|.+|.. .| ++++|..+|++++.. +++.+++++|.++...|+..+ +..++
T Consensus 183 ~eA~~~~~~~l~~~p~~~~~~~~la~~~~~-~g---~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~ 258 (291)
T 3mkr_A 183 QDAYYIFQEMADKCSPTLLLLNGQAACHMA-QG---RWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYL 258 (291)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-cC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 9999999999885 688999999999965 33 999999999999886 679999999999999999876 57899
Q ss_pred HHHHHcCcHHHHH
Q 019340 299 ELATRAGETAADH 311 (342)
Q Consensus 299 ~~a~~~~~~~a~~ 311 (342)
+++++.+|.++..
T Consensus 259 ~~~~~~~P~~~~~ 271 (291)
T 3mkr_A 259 SQLKDAHRSHPFI 271 (291)
T ss_dssp HHHHHHCTTCHHH
T ss_pred HHHHHhCCCChHH
Confidence 9999998766543
No 61
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.75 E-value=2.2e-16 Score=144.82 Aligned_cols=220 Identities=13% Similarity=0.086 Sum_probs=176.5
Q ss_pred HHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC----C----CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC----C---
Q 019340 103 VLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR----G----STLAMVDAGLMYWEMDKKEAAISLYRQAAVL----G--- 167 (342)
Q Consensus 103 a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~----~----~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----~--- 167 (342)
.++.+|.++.. .+++++|+.+|++|+.. + .+.+++.+|.+|...|++++|+.++++|++. +
T Consensus 105 ~~~~~g~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 180 (383)
T 3ulq_A 105 FNFFRGMYELD----QREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYN 180 (383)
T ss_dssp HHHHHHHHHHH----TTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTH
T ss_pred HHHHHHHHHHH----hcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccch
Confidence 45568999888 58999999999999985 3 3568899999999999999999999999854 2
Q ss_pred --CHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc----CC----HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH--
Q 019340 168 --DPAGQFNLGISYLQAQPANAEEAVKLLYQASIA----GH----VRAQYQLALCLHRGRGVDFNLQEAARWYLRAAE-- 235 (342)
Q Consensus 168 --~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~----~~----~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~-- 235 (342)
...++.++|.+|. ..+++++|+.+|+++++. ++ ..+++++|.+|.. .+++++|+.+|++|++
T Consensus 181 ~~~~~~~~~lg~~~~--~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~----~g~~~~A~~~~~~al~~~ 254 (383)
T 3ulq_A 181 IRLLQCHSLFATNFL--DLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNS----QSQYEDAIPYFKRAIAVF 254 (383)
T ss_dssp HHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--HhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHH
Confidence 2468999999999 899999999999999864 22 3589999999998 7899999999999998
Q ss_pred ------CCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc----CCH---HHHHHHHHHhhhcCC---HHHHHHHHH
Q 019340 236 ------GGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC----GHG---KAQLEHGLGLFTEGE---MMKAVVYLE 299 (342)
Q Consensus 236 ------~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~~~---~a~~~Lg~~~~~~~~---~~~A~~~~~ 299 (342)
...+.+++++|.+|.. .| ++++|+.+++++++. +++ ..+..||.+|...|+ +++|+.+++
T Consensus 255 ~~~~~~~~~~~~~~~l~~~~~~-~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~ 330 (383)
T 3ulq_A 255 EESNILPSLPQAYFLITQIHYK-LG---KIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLE 330 (383)
T ss_dssp HHTTCGGGHHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHH
T ss_pred HhhccchhHHHHHHHHHHHHHH-CC---CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 2346789999999965 33 999999999999874 343 235789999999999 888888888
Q ss_pred HHHHcCcHHHHHHHHHHHhhcChhcHHHHHHHHHhhhc
Q 019340 300 LATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRA 337 (342)
Q Consensus 300 ~a~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 337 (342)
+. ...+........+...+...++.++|...+++...
T Consensus 331 ~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 331 SK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 87 22223333334444555566889999888776643
No 62
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.74 E-value=1.1e-16 Score=141.21 Aligned_cols=227 Identities=15% Similarity=0.085 Sum_probs=131.1
Q ss_pred HHHHHhhCCChhHHhhHHHHHHHHHHhC------cCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC------C-
Q 019340 69 LNKIAASFTLPQLRAASLVCKSWNDALR------PLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR------G- 135 (342)
Q Consensus 69 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~------~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~------~- 135 (342)
...+...+..|++.+|...+....+... ....+.+++.+|.+|.. .+++++|+.+|++++.. +
T Consensus 31 ~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 31 HNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRD----QNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 3344445566777777766666666431 12234566667777766 46777777777776653 1
Q ss_pred ---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC----------CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--
Q 019340 136 ---STLAMVDAGLMYWEMDKKEAAISLYRQAAVL----------GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA-- 200 (342)
Q Consensus 136 ---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----------~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~-- 200 (342)
...++..+|.+|...|++++|+.+|+++++. ....++.++|.++. ..+++++|+.+|+++++.
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~--~~~~~~~A~~~~~~a~~~~~ 184 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQ--NQGKYEEVEYYYQRALEIYQ 184 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--TTTCHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHHHH
Confidence 2345666777777777777777777776643 12345666777776 666777777777776553
Q ss_pred ------C--CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHcC--CCCcccH
Q 019340 201 ------G--HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG-----------YVRAMYNTSLCYSFG--EGLPLSH 259 (342)
Q Consensus 201 ------~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~~-----------~~~a~~~lg~~y~~g--~g~~~~~ 259 (342)
. ...+++.+|.+|.. .+++++|+.+|+++++.. ....+..++.++..+ ......+
T Consensus 185 ~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (311)
T 3nf1_A 185 TKLGPDDPNVAKTKNNLASCYLK----QGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSF 260 (311)
T ss_dssp HTSCTTCHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCS
T ss_pred HHhCCCCHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHH
Confidence 1 23456667777766 567777777777766421 111222333332221 1112244
Q ss_pred HHHHHHHHHHHHc--CCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHcC
Q 019340 260 RQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAG 305 (342)
Q Consensus 260 ~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~ 305 (342)
.++..+++.+... ....++..||.+|...|++++|..+|++++++.
T Consensus 261 ~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~ 308 (311)
T 3nf1_A 261 GEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSR 308 (311)
T ss_dssp CCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence 5555566665543 335677888888888888888888888888764
No 63
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.74 E-value=2.2e-16 Score=137.08 Aligned_cols=213 Identities=14% Similarity=-0.018 Sum_probs=176.1
Q ss_pred cCCHHHHHHHHHHHHhC------CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHH
Q 019340 118 RKNLDKALDSFLKGAAR------GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEE 189 (342)
Q Consensus 118 ~~~~~~A~~~~~~A~~~------~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~ 189 (342)
.+++++|+..|+++++. +++.+++.+|.+|...|++++|+.+|+++++. .++.+++.+|.+|. ..+++++
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~--~~~~~~~ 95 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLT--QAGNFDA 95 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH--HTTCHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH--HccCHHH
Confidence 57899999999999986 25778999999999999999999999999865 68999999999999 8999999
Q ss_pred HHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHH
Q 019340 190 AVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKW 265 (342)
Q Consensus 190 A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~ 265 (342)
|+.+|+++++. .++.+++.+|.+|.. .+++++|+.+|+++++. .+......++.++. .+++++|+.+
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~-----~~~~~~A~~~ 166 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYY----GGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQ-----KLDEKQAKEV 166 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-----HHCHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHH----hccHHHHHHHHHHHHHhCCCChHHHHHHHHHHH-----hcCHHHHHHH
Confidence 99999999884 589999999999998 78999999999999886 45555555555543 3499999999
Q ss_pred HHHHHHcC-CHHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCcH----HHHHHHHHHHhhcChhcHHHHHHHHHhhhcCCC
Q 019340 266 MKRAADCG-HGKAQLEHGLGLFTEGEMMKAVVYLELATRAGET----AADHVKNVILQQLSATSRDRAMLVVDSWRAMPS 340 (342)
Q Consensus 266 ~~~a~~~~-~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~----~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 340 (342)
|++++... +....+.++.++...++.++|+..++++++..+. ++.....+...+...++.++|...+++.....|
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 246 (275)
T 1xnf_A 167 LKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNV 246 (275)
T ss_dssp HHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHHhcCCcchHHHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCc
Confidence 99998762 2233456788889999999999999999877652 234444445555566899999999999988877
Q ss_pred C
Q 019340 341 L 341 (342)
Q Consensus 341 ~ 341 (342)
.
T Consensus 247 ~ 247 (275)
T 1xnf_A 247 H 247 (275)
T ss_dssp T
T ss_pred h
Confidence 4
No 64
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.74 E-value=9.1e-17 Score=148.16 Aligned_cols=224 Identities=17% Similarity=0.109 Sum_probs=182.2
Q ss_pred CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC--CH----HHHHHHHHHHhcCCCHHHHHHHHHHHHhC-------
Q 019340 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--ST----LAMVDAGLMYWEMDKKEAAISLYRQAAVL------- 166 (342)
Q Consensus 100 ~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~----~a~~~lg~~~~~~~~~~~A~~~~~~a~~~------- 166 (342)
.+..++.+|..+.. .+++++|+.+|+++++.+ ++ .+++.+|.+|...|++++|+.+|+++++.
T Consensus 47 ~~~~l~~~g~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 122 (411)
T 4a1s_A 47 MCLELALEGERLCN----AGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDR 122 (411)
T ss_dssp HHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHH----hCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCc
Confidence 34567788999988 589999999999999863 44 57899999999999999999999999854
Q ss_pred -CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--------CCHHHHHHHHHHHhcCCCCCCC---------------
Q 019340 167 -GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA--------GHVRAQYQLALCLHRGRGVDFN--------------- 222 (342)
Q Consensus 167 -~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--------~~~~a~~~lg~~~~~g~~~~~~--------------- 222 (342)
....+++.+|.+|. ..+++++|+.+|+++++. ....++.++|.+|.. .++
T Consensus 123 ~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~~~~~~~~~~~a~ 196 (411)
T 4a1s_A 123 LGEAKSSGNLGNTLK--VMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHA----KGKHLGQRNPGKFGDDVK 196 (411)
T ss_dssp HHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH----HHHHHHHHSTTCCCHHHH
T ss_pred hHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH----cCcccccccchhhhhhhh
Confidence 33578999999999 889999999999998764 246688999999987 667
Q ss_pred --HHHHHHHHHHHHHC----C----CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc----CC----HHHHHHHHHH
Q 019340 223 --LQEAARWYLRAAEG----G----YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC----GH----GKAQLEHGLG 284 (342)
Q Consensus 223 --~~~A~~~~~~A~~~----~----~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~~----~~a~~~Lg~~ 284 (342)
+++|+.+|+++++. + ...++.++|.+|.. .+++++|+.+|+++++. ++ ..++.++|.+
T Consensus 197 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 272 (411)
T 4a1s_A 197 EALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYL----LGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNS 272 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 99999999998764 2 34588999999965 33999999999999874 23 2378999999
Q ss_pred hhhcCCHHHHHHHHHHHHHcCc------HHHHHHHHHHHhhcChhcHHHHHHHHHhhhc
Q 019340 285 LFTEGEMMKAVVYLELATRAGE------TAADHVKNVILQQLSATSRDRAMLVVDSWRA 337 (342)
Q Consensus 285 ~~~~~~~~~A~~~~~~a~~~~~------~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 337 (342)
|...|++++|+.+|+++++..+ ..+.....+...+...++.++|...+++...
T Consensus 273 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 331 (411)
T 4a1s_A 273 HIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLA 331 (411)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999999987643 2234444444455566889999888877643
No 65
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.73 E-value=3.2e-16 Score=143.60 Aligned_cols=220 Identities=11% Similarity=0.071 Sum_probs=156.4
Q ss_pred hhCCChhHHhhHHHHHHHHHHhCcCCC----HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC----C-----CHHHH
Q 019340 74 ASFTLPQLRAASLVCKSWNDALRPLRE----AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR----G-----STLAM 140 (342)
Q Consensus 74 ~~~~~~~~~~a~~~~~~~~~~~~~~~~----a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~----~-----~~~a~ 140 (342)
..+..|++.+|...+....+.....++ +.+++.+|.+|.. .+++++|+.+|++|++. + .+.++
T Consensus 110 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 185 (378)
T 3q15_A 110 YEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYH----MKQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHH----cCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence 345678888888777777666554443 5678888888887 57888888888888763 1 24466
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhC----CC----HHHHHHHHHHHHcCCccCHHHHHHHHHHHHH-----c--CCHHH
Q 019340 141 VDAGLMYWEMDKKEAAISLYRQAAVL----GD----PAGQFNLGISYLQAQPANAEEAVKLLYQASI-----A--GHVRA 205 (342)
Q Consensus 141 ~~lg~~~~~~~~~~~A~~~~~~a~~~----~~----~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~-----~--~~~~a 205 (342)
.++|.+|...|++++|+.+|+++++. ++ ..++.+||.+|. ..+++++|+.+|+++++ . ..+.+
T Consensus 186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~--~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 263 (378)
T 3q15_A 186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYD--RSGDDQMAVEHFQKAAKVSREKVPDLLPKV 263 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--HHTCHHHHHHHHHHHHHHHHHHCGGGHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHHHHHhhCChhHHHH
Confidence 78888888888888888888888753 33 357778888888 77888888888888876 2 24677
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC----C---CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc-CCHHH
Q 019340 206 QYQLALCLHRGRGVDFNLQEAARWYLRAAEG----G---YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC-GHGKA 277 (342)
Q Consensus 206 ~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~----~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~-~~~~a 277 (342)
++++|.+|.. .+++++|+.+|+++++. + .......++.+|.. .+-...+.+|+.++++.-.. .....
T Consensus 264 ~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~-~~~~~~~~~al~~~~~~~~~~~~~~~ 338 (378)
T 3q15_A 264 LFGLSWTLCK----AGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKE-TVDERKIHDLLSYFEKKNLHAYIEAC 338 (378)
T ss_dssp HHHHHHHHHH----TTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSS-SCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHH----CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHhCCChhHHHHH
Confidence 8888888877 67888888888888764 1 12345566666633 33123377777777763211 22455
Q ss_pred HHHHHHHhhhcCCHHHHHHHHHHHHHc
Q 019340 278 QLEHGLGLFTEGEMMKAVVYLELATRA 304 (342)
Q Consensus 278 ~~~Lg~~~~~~~~~~~A~~~~~~a~~~ 304 (342)
+..||.+|...|++++|..+|+++++.
T Consensus 339 ~~~la~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 339 ARSAAAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 678888888888888888888888764
No 66
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.73 E-value=2e-16 Score=144.94 Aligned_cols=224 Identities=18% Similarity=0.118 Sum_probs=182.3
Q ss_pred CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC--C----HHHHHHHHHHHhcCCCHHHHHHHHHHHHhC----C--
Q 019340 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--S----TLAMVDAGLMYWEMDKKEAAISLYRQAAVL----G-- 167 (342)
Q Consensus 100 ~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~----~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----~-- 167 (342)
.+.+++.+|.++.. .+++++|+.+|+++++.+ + ..+++.+|.+|...|++++|+.+|+++++. +
T Consensus 8 ~~~~l~~~g~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 83 (406)
T 3sf4_A 8 SCLELALEGERLCK----SGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQ 83 (406)
T ss_dssp CHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHH----hccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccc
Confidence 56778899999998 589999999999999863 4 367889999999999999999999998754 2
Q ss_pred --CHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc----CC----HHHHHHHHHHHhcCCCCCCC---------------
Q 019340 168 --DPAGQFNLGISYLQAQPANAEEAVKLLYQASIA----GH----VRAQYQLALCLHRGRGVDFN--------------- 222 (342)
Q Consensus 168 --~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~----~~----~~a~~~lg~~~~~g~~~~~~--------------- 222 (342)
.+.++..+|.+|. ..+++++|+.+|+++++. ++ +.++.++|.+|.. .++
T Consensus 84 ~~~~~~~~~la~~~~--~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~~~~~~~~~~~~~ 157 (406)
T 3sf4_A 84 LGEAKASGNLGNTLK--VLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHA----KGKSFGCPGPQDVGEFPE 157 (406)
T ss_dssp HHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH----HHHTCC-------CCCCH
T ss_pred HHHHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHH----cCCcccccccchhhhhhh
Confidence 3568899999999 889999999999998764 23 5689999999987 667
Q ss_pred -----HHHHHHHHHHHHHC----C----CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc----CC----HHHHHHH
Q 019340 223 -----LQEAARWYLRAAEG----G----YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC----GH----GKAQLEH 281 (342)
Q Consensus 223 -----~~~A~~~~~~A~~~----~----~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~~----~~a~~~L 281 (342)
+++|+.+|.+++.. + ...++.++|.+|.. .+++++|+.+|+++++. ++ ..++.++
T Consensus 158 ~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 233 (406)
T 3sf4_A 158 EVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYL----LGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNL 233 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----HTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 99999999998764 2 24578999999965 34999999999999864 22 3478999
Q ss_pred HHHhhhcCCHHHHHHHHHHHHHcCcHH------HHHHHHHHHhhcChhcHHHHHHHHHhhhc
Q 019340 282 GLGLFTEGEMMKAVVYLELATRAGETA------ADHVKNVILQQLSATSRDRAMLVVDSWRA 337 (342)
Q Consensus 282 g~~~~~~~~~~~A~~~~~~a~~~~~~~------a~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 337 (342)
|.+|...|++++|..+|+++++..+.. +.....+...+...++.++|...+++...
T Consensus 234 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 295 (406)
T 3sf4_A 234 GNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 295 (406)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 999999999999999999998763322 33444445555666889999888776543
No 67
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.70 E-value=4e-16 Score=138.07 Aligned_cols=164 Identities=16% Similarity=0.162 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC----CC----HHHHHHHHHHHHcCCccCHHHHHH
Q 019340 121 LDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL----GD----PAGQFNLGISYLQAQPANAEEAVK 192 (342)
Q Consensus 121 ~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----~~----~~a~~~Lg~~~~~g~~~~~~~A~~ 192 (342)
+++|+.+|.++ |.+|...|++++|+.+|+++++. ++ +.++.++|.+|. ..|++++|+.
T Consensus 33 ~~~A~~~~~~a------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~--~~g~~~~A~~ 98 (292)
T 1qqe_A 33 FEEAADLCVQA------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFK--SGGNSVNAVD 98 (292)
T ss_dssp HHHHHHHHHHH------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--HTTCHHHHHH
T ss_pred HHHHHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH--HCCCHHHHHH
Confidence 55555555554 33455555666666666555533 22 345555566555 5555666666
Q ss_pred HHHHHHHc----CC----HHHHHHHHHHHhcCCCCC-CCHHHHHHHHHHHHHC----CC----HHHHHHHHHHHHcCCCC
Q 019340 193 LLYQASIA----GH----VRAQYQLALCLHRGRGVD-FNLQEAARWYLRAAEG----GY----VRAMYNTSLCYSFGEGL 255 (342)
Q Consensus 193 ~~~~a~~~----~~----~~a~~~lg~~~~~g~~~~-~~~~~A~~~~~~A~~~----~~----~~a~~~lg~~y~~g~g~ 255 (342)
+|+++++. ++ ..++.++|.+|.. . +++++|+.+|++|++. ++ ..++.++|.+|.. .|
T Consensus 99 ~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~----~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~-~g- 172 (292)
T 1qqe_A 99 SLENAIQIFTHRGQFRRGANFKFELGEILEN----DLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKAL-DG- 172 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----TTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TT-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH----hhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH-hC-
Confidence 66655542 22 2345556665554 3 4556666666665543 11 2345555665543 12
Q ss_pred cccHHHHHHHHHHHHHcC--CH-------HHHHHHHHHhhhcCCHHHHHHHHHHHHHcCc
Q 019340 256 PLSHRQARKWMKRAADCG--HG-------KAQLEHGLGLFTEGEMMKAVVYLELATRAGE 306 (342)
Q Consensus 256 ~~~~~~A~~~~~~a~~~~--~~-------~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~ 306 (342)
++++|+.+|+++++.. +. .+++++|.++...|++++|+.+|++++++.+
T Consensus 173 --~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 230 (292)
T 1qqe_A 173 --QYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDP 230 (292)
T ss_dssp --CHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC--
T ss_pred --CHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 5666666666665531 11 1445566666666666666666666655433
No 68
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.70 E-value=8.4e-16 Score=136.50 Aligned_cols=222 Identities=18% Similarity=0.112 Sum_probs=178.3
Q ss_pred HHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC--C----HHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--------C
Q 019340 102 MVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--S----TLAMVDAGLMYWEMDKKEAAISLYRQAAVL--------G 167 (342)
Q Consensus 102 ~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~----~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--------~ 167 (342)
..++..|..+.. .+++++|+.+|+++++.. + ..++..+|.+|...|++++|+.+++++++. .
T Consensus 6 ~~l~~~g~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 81 (338)
T 3ro2_A 6 LELALEGERLCK----SGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 81 (338)
T ss_dssp HHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHH----hccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHH
Confidence 456778998888 589999999999999863 4 467889999999999999999999998754 2
Q ss_pred CHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc----CC----HHHHHHHHHHHhcCCCCCCC-----------------
Q 019340 168 DPAGQFNLGISYLQAQPANAEEAVKLLYQASIA----GH----VRAQYQLALCLHRGRGVDFN----------------- 222 (342)
Q Consensus 168 ~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~----~~----~~a~~~lg~~~~~g~~~~~~----------------- 222 (342)
.+.++..+|.+|. ..+++++|+.+|+++++. ++ ..++..+|.+|.. .++
T Consensus 82 ~~~~~~~l~~~~~--~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~a 155 (338)
T 3ro2_A 82 EAKASGNLGNTLK--VLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHA----KGKSFGCPGPQDTGEFPEDV 155 (338)
T ss_dssp HHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----HHHTSSSSSCC----CCHHH
T ss_pred HHHHHHHHHHHHH--HccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH----cCcccccchhhhhhhhhhhH
Confidence 3568899999999 889999999999998763 33 4588999999986 556
Q ss_pred ---HHHHHHHHHHHHHC----C----CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc----CC----HHHHHHHHH
Q 019340 223 ---LQEAARWYLRAAEG----G----YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC----GH----GKAQLEHGL 283 (342)
Q Consensus 223 ---~~~A~~~~~~A~~~----~----~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~~----~~a~~~Lg~ 283 (342)
+++|+.+|++++.. + ...++.++|.+|.. .+++++|+.+++++++. ++ ..++.++|.
T Consensus 156 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~ 231 (338)
T 3ro2_A 156 RNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYL----LGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGN 231 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 89999999998763 2 24578899999965 34999999999999864 33 347899999
Q ss_pred HhhhcCCHHHHHHHHHHHHHcCcHH------HHHHHHHHHhhcChhcHHHHHHHHHhhhc
Q 019340 284 GLFTEGEMMKAVVYLELATRAGETA------ADHVKNVILQQLSATSRDRAMLVVDSWRA 337 (342)
Q Consensus 284 ~~~~~~~~~~A~~~~~~a~~~~~~~------a~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 337 (342)
++...|++++|..+|+++++..+.. +.........+...++.++|...+++...
T Consensus 232 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 291 (338)
T 3ro2_A 232 AYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 291 (338)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 9999999999999999998763221 33344444555566889999888776543
No 69
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.69 E-value=3.1e-16 Score=131.77 Aligned_cols=162 Identities=15% Similarity=0.066 Sum_probs=98.7
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHH----------------HHHHHHcCCccCHHHHHHHHHHHHH
Q 019340 138 LAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFN----------------LGISYLQAQPANAEEAVKLLYQASI 199 (342)
Q Consensus 138 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~----------------Lg~~~~~g~~~~~~~A~~~~~~a~~ 199 (342)
+.++..|..+...|++++|+.+|+++++. +++.+++. +|.+|. ..+++++|+.+|+++++
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~--~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYK--KNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHH--HCCCHHHHHHHHHHHHH
Confidence 34444445554555555555555554433 33444444 666666 66666666666666655
Q ss_pred --cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCC-
Q 019340 200 --AGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGH- 274 (342)
Q Consensus 200 --~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~- 274 (342)
++++.+++++|.+|.. .+++++|+.+|+++++. +++.+++++|.+|... | ..+...+...|+++....+
T Consensus 83 ~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~-~-~~~~~~~~~~~~~~~~~~~~ 156 (208)
T 3urz_A 83 KAPNNVDCLEACAEMQVC----RGQEKDALRMYEKILQLEADNLAANIFLGNYYYLT-A-EQEKKKLETDYKKLSSPTKM 156 (208)
T ss_dssp HCTTCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-H-HHHHHHHHHHHC---CCCHH
T ss_pred HCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH-h-HHHHHHHHHHHHHHhCCCch
Confidence 3466666666666665 55666666666666654 4566777777666321 0 2245666677777665433
Q ss_pred HHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCcH
Q 019340 275 GKAQLEHGLGLFTEGEMMKAVVYLELATRAGET 307 (342)
Q Consensus 275 ~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~ 307 (342)
..+++++|.++...|++++|+.+|++|+++.|.
T Consensus 157 ~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 157 QYARYRDGLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 236678888888889999999999999888764
No 70
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.69 E-value=6.7e-15 Score=131.10 Aligned_cols=216 Identities=9% Similarity=-0.020 Sum_probs=168.0
Q ss_pred HhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCC---CCcCCH-------HHHHHHHHHHHh-C--CCHHHHHHHHHHHh
Q 019340 82 RAASLVCKSWNDALRPLREAMVLLRWGKRFKHGR---GVRKNL-------DKALDSFLKGAA-R--GSTLAMVDAGLMYW 148 (342)
Q Consensus 82 ~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~---g~~~~~-------~~A~~~~~~A~~-~--~~~~a~~~lg~~~~ 148 (342)
.+|...+.+.++..+. ++.+++.+|.++.... ...+++ ++|+..|++|+. . ++..++..+|.++.
T Consensus 33 ~~a~~~~~~al~~~p~--~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGH--HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 5777788888877655 8888888898875300 001453 889999999988 4 47788899999999
Q ss_pred cCCCHHHHHHHHHHHHhC--CCHH-HHHHHHHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCCCCH
Q 019340 149 EMDKKEAAISLYRQAAVL--GDPA-GQFNLGISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNL 223 (342)
Q Consensus 149 ~~~~~~~A~~~~~~a~~~--~~~~-a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~ 223 (342)
..|++++|+..|+++++. .++. ++.++|.++. ..+++++|+..|+++++. ....++...+.+... ..+++
T Consensus 111 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~--~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~---~~~~~ 185 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFAR--RAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYY---CSKDK 185 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHH--HHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHH---TSCCH
T ss_pred hcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHH--HhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH---HcCCH
Confidence 999999999999999876 4565 8889998888 788999999999998874 456666666655432 14678
Q ss_pred HHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc------CCHHHHHHHHHHhhhcCCHHHHH
Q 019340 224 QEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC------GHGKAQLEHGLGLFTEGEMMKAV 295 (342)
Q Consensus 224 ~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~------~~~~a~~~Lg~~~~~~~~~~~A~ 295 (342)
++|+..|+++++. +++.++..++.++.. .| ++++|+.+|++++.. .....+..++..+...|++++|.
T Consensus 186 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~-~g---~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~ 261 (308)
T 2ond_A 186 SVAFKIFELGLKKYGDIPEYVLAYIDYLSH-LN---EDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASIL 261 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-TC---CHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-CC---CHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999774 678888888888854 33 899999999999884 24567788888888899999999
Q ss_pred HHHHHHHHcCcHH
Q 019340 296 VYLELATRAGETA 308 (342)
Q Consensus 296 ~~~~~a~~~~~~~ 308 (342)
.+++++++..+.+
T Consensus 262 ~~~~~a~~~~p~~ 274 (308)
T 2ond_A 262 KVEKRRFTAFREE 274 (308)
T ss_dssp HHHHHHHHHTTTT
T ss_pred HHHHHHHHHcccc
Confidence 9999999887654
No 71
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.69 E-value=5e-15 Score=135.66 Aligned_cols=220 Identities=13% Similarity=0.064 Sum_probs=175.4
Q ss_pred HHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC----C----CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC----C--
Q 019340 102 MVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR----G----STLAMVDAGLMYWEMDKKEAAISLYRQAAVL----G-- 167 (342)
Q Consensus 102 ~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~----~----~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----~-- 167 (342)
..++.+|..+.. .+++++|+.+|++|... + .+.+++++|.+|...|++++|+.++++|++. +
T Consensus 102 ~~~~~~g~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~ 177 (378)
T 3q15_A 102 YSLFFRGMYEFD----QKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLY 177 (378)
T ss_dssp HHHHHHHHHHHH----TTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTC
T ss_pred HHHHHHHHHHHH----HCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCc
Confidence 357778998888 58999999999999875 3 3568899999999999999999999999853 2
Q ss_pred ---CHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc----C----CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH-
Q 019340 168 ---DPAGQFNLGISYLQAQPANAEEAVKLLYQASIA----G----HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAE- 235 (342)
Q Consensus 168 ---~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~----~----~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~- 235 (342)
.+.++.++|.+|. ..+++++|+.+|+++++. + ...++++||.+|.. .+++++|+.+|++|++
T Consensus 178 ~~~~~~~~~~lg~~y~--~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~----~~~~~~A~~~~~~al~~ 251 (378)
T 3q15_A 178 SIRTIQSLFVIAGNYD--DFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDR----SGDDQMAVEHFQKAAKV 251 (378)
T ss_dssp HHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHH--HhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHH
Confidence 2568889999999 899999999999999873 2 35688999999987 7799999999999998
Q ss_pred ----C--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc----CC---HHHHHHHHHHhhhcCC---HHHHHHHHH
Q 019340 236 ----G--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC----GH---GKAQLEHGLGLFTEGE---MMKAVVYLE 299 (342)
Q Consensus 236 ----~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~~---~~a~~~Lg~~~~~~~~---~~~A~~~~~ 299 (342)
. ..+.+++++|.+|.. .| ++++|+.+++++++. ++ ...+..|+.+|...++ +.+|+.+++
T Consensus 252 ~~~~~~~~~~~~~~~la~~~~~-~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~ 327 (378)
T 3q15_A 252 SREKVPDLLPKVLFGLSWTLCK-AG---QTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFE 327 (378)
T ss_dssp HHHHCGGGHHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHH
T ss_pred HHhhCChhHHHHHHHHHHHHHH-CC---CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 3 247789999999965 33 999999999999885 22 3456788999999998 888998888
Q ss_pred HHHHcCcHHHHHHHHHHHhhcChhcHHHHHHHHHhhh
Q 019340 300 LATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWR 336 (342)
Q Consensus 300 ~a~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~ 336 (342)
+... .+........+...+...++.++|...+++..
T Consensus 328 ~~~~-~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 328 KKNL-HAYIEACARSAAAVFESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp HTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hCCC-hhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 7321 12222333344455556688888888777654
No 72
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.68 E-value=7.4e-16 Score=133.80 Aligned_cols=195 Identities=14% Similarity=0.088 Sum_probs=149.7
Q ss_pred CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC------C----CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC---
Q 019340 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR------G----STLAMVDAGLMYWEMDKKEAAISLYRQAAVL--- 166 (342)
Q Consensus 100 ~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~------~----~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--- 166 (342)
.+.+++.+|.+|.. .+++++|+.+|+++++. + ...++..+|.+|...|++++|+.+|+++++.
T Consensus 42 ~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 117 (283)
T 3edt_B 42 VATMLNILALVYRD----QNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 117 (283)
T ss_dssp HHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----cccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 46789999999999 58999999999999875 2 3567899999999999999999999999864
Q ss_pred -------CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--------C--CHHHHHHHHHHHhcCCCCCCCHHHHHHH
Q 019340 167 -------GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA--------G--HVRAQYQLALCLHRGRGVDFNLQEAARW 229 (342)
Q Consensus 167 -------~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--------~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~ 229 (342)
....++.++|.+|. ..+++++|+.+|+++++. . ...++.++|.+|.. .+++++|+.+
T Consensus 118 ~~~~~~~~~~~~~~~la~~~~--~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~ 191 (283)
T 3edt_B 118 VLGKFHPDVAKQLNNLALLCQ--NQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLK----QGKYQDAETL 191 (283)
T ss_dssp HHCTTCHHHHHHHHHHHHHHH--TTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHH----HTCHHHHHHH
T ss_pred HcCCCChHHHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH----cCCHHHHHHH
Confidence 23578999999999 899999999999999875 2 35788999999987 7799999999
Q ss_pred HHHHHHC-----------CCHHHHHHHHHHHHcCC--CCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhhcCCHHHH
Q 019340 230 YLRAAEG-----------GYVRAMYNTSLCYSFGE--GLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKA 294 (342)
Q Consensus 230 ~~~A~~~-----------~~~~a~~~lg~~y~~g~--g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A 294 (342)
|+++++. .....+..++.++..+. .....+.++..+++..... ....++..||.+|...|++++|
T Consensus 192 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 271 (283)
T 3edt_B 192 YKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAA 271 (283)
T ss_dssp HHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHH
Confidence 9999863 23345666666664431 1233455555555544322 2356789999999999999999
Q ss_pred HHHHHHHHHc
Q 019340 295 VVYLELATRA 304 (342)
Q Consensus 295 ~~~~~~a~~~ 304 (342)
..+|+++++.
T Consensus 272 ~~~~~~al~~ 281 (283)
T 3edt_B 272 HTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHHh
Confidence 9999999875
No 73
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.68 E-value=4.7e-15 Score=131.17 Aligned_cols=191 Identities=16% Similarity=0.082 Sum_probs=153.8
Q ss_pred HHHHHcCCCCcCCHHHHHHHHHHHHhC----CC----HHHHHHHHHHHhcCCCHHHHHHHHHHHHhC----CC----HHH
Q 019340 108 GKRFKHGRGVRKNLDKALDSFLKGAAR----GS----TLAMVDAGLMYWEMDKKEAAISLYRQAAVL----GD----PAG 171 (342)
Q Consensus 108 g~~y~~g~g~~~~~~~A~~~~~~A~~~----~~----~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----~~----~~a 171 (342)
|.+|.. .+++++|+..|.+|++. ++ +.++.++|.+|...|++++|+.+|++|++. ++ ..+
T Consensus 44 ~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~ 119 (292)
T 1qqe_A 44 ATIYRL----RKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANF 119 (292)
T ss_dssp HHHHHH----TTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHH----cCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 667766 58999999999999885 33 467899999999999999999999999864 44 468
Q ss_pred HHHHHHHHHcCCc-cCHHHHHHHHHHHHHc----CC----HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCC--CH-
Q 019340 172 QFNLGISYLQAQP-ANAEEAVKLLYQASIA----GH----VRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG--YV- 239 (342)
Q Consensus 172 ~~~Lg~~~~~g~~-~~~~~A~~~~~~a~~~----~~----~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~~--~~- 239 (342)
+.++|.+|. .. +++++|+.+|+++++. ++ ..++.++|.+|.. .+++++|+.+|+++++.. +.
T Consensus 120 ~~~lg~~~~--~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~ 193 (292)
T 1qqe_A 120 KFELGEILE--NDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKAL----DGQYIEASDIYSKLIKSSMGNRL 193 (292)
T ss_dssp HHHHHHHHH--HTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTTSSCTT
T ss_pred HHHHHHHHH--HhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHhcCCc
Confidence 899999999 75 9999999999999874 22 4678999999988 789999999999999853 21
Q ss_pred ------HHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCC--HH-----HHHHHHHHhh--hcCCHHHHHHHHHHHHHc
Q 019340 240 ------RAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGH--GK-----AQLEHGLGLF--TEGEMMKAVVYLELATRA 304 (342)
Q Consensus 240 ------~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~-----a~~~Lg~~~~--~~~~~~~A~~~~~~a~~~ 304 (342)
.++.++|.+|.. .| ++++|+.+|+++++..+ .. .+..|+..+. +.+++++|+..|.+++.+
T Consensus 194 ~~~~~~~~~~~lg~~~~~-~g---~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l 269 (292)
T 1qqe_A 194 SQWSLKDYFLKKGLCQLA-AT---DAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRL 269 (292)
T ss_dssp TGGGHHHHHHHHHHHHHH-TT---CHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCC
T ss_pred ccHHHHHHHHHHHHHHHH-cC---CHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCcc
Confidence 267899999965 33 99999999999987533 22 3455666664 467899999999999888
Q ss_pred CcHHHHHH
Q 019340 305 GETAADHV 312 (342)
Q Consensus 305 ~~~~a~~~ 312 (342)
++......
T Consensus 270 ~~~~~~~~ 277 (292)
T 1qqe_A 270 DKWKITIL 277 (292)
T ss_dssp CHHHHHHH
T ss_pred HHHHHHHH
Confidence 87665443
No 74
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.68 E-value=1.7e-15 Score=131.35 Aligned_cols=180 Identities=12% Similarity=0.062 Sum_probs=131.7
Q ss_pred CCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CC---HHHHHHHHHHHhcCCCHHHHHHHHHHHHhC-----C
Q 019340 98 LREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GS---TLAMVDAGLMYWEMDKKEAAISLYRQAAVL-----G 167 (342)
Q Consensus 98 ~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~---~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-----~ 167 (342)
..++..++.+|..+.. .+++++|+..|+++++. ++ +.+++.+|.+|...|++++|+..|+++++. .
T Consensus 12 ~~~~~~~~~~a~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 87 (261)
T 3qky_A 12 HSSPQEAFERAMEFYN----QGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPR 87 (261)
T ss_dssp CSSHHHHHHHHHHHHH----TTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT
T ss_pred CCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCch
Confidence 4578899999999998 58999999999999986 35 789999999999999999999999999875 2
Q ss_pred CHHHHHHHHHHHHcCC--------ccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCC
Q 019340 168 DPAGQFNLGISYLQAQ--------PANAEEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG 237 (342)
Q Consensus 168 ~~~a~~~Lg~~~~~g~--------~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~~ 237 (342)
.+.+++.+|.++. . .+++++|+.+|+++++. +++.+...+..+... ...
T Consensus 88 ~~~a~~~lg~~~~--~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~-------------------~~~ 146 (261)
T 3qky_A 88 VPQAEYERAMCYY--KLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIREL-------------------RAK 146 (261)
T ss_dssp HHHHHHHHHHHHH--HHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHH-------------------HHH
T ss_pred hHHHHHHHHHHHH--HhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHH-------------------HHH
Confidence 3789999999998 6 88999999999998874 344333222222110 001
Q ss_pred CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcC-----CHHHHHHHHHHhhhc----------CCHHHHHHHHHHHH
Q 019340 238 YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCG-----HGKAQLEHGLGLFTE----------GEMMKAVVYLELAT 302 (342)
Q Consensus 238 ~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-----~~~a~~~Lg~~~~~~----------~~~~~A~~~~~~a~ 302 (342)
....++.+|.+|.. .| ++++|+.+|+++++.. .+.+++.+|.+|... |++++|+.+|++++
T Consensus 147 ~~~~~~~la~~~~~-~g---~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~ 222 (261)
T 3qky_A 147 LARKQYEAARLYER-RE---LYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLL 222 (261)
T ss_dssp HHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-cc---CHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHH
Confidence 12345677777754 22 7777777777776642 245677777777655 67777777777777
Q ss_pred HcCc
Q 019340 303 RAGE 306 (342)
Q Consensus 303 ~~~~ 306 (342)
+..|
T Consensus 223 ~~~p 226 (261)
T 3qky_A 223 QIFP 226 (261)
T ss_dssp HHCT
T ss_pred HHCC
Confidence 6643
No 75
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.67 E-value=3.9e-14 Score=126.11 Aligned_cols=208 Identities=10% Similarity=-0.080 Sum_probs=169.2
Q ss_pred HHHHHHHHHHhC--CCHHHHHHHHHHHhc-------CCCH-------HHHHHHHHHHHh-C--CCHHHHHHHHHHHHcCC
Q 019340 123 KALDSFLKGAAR--GSTLAMVDAGLMYWE-------MDKK-------EAAISLYRQAAV-L--GDPAGQFNLGISYLQAQ 183 (342)
Q Consensus 123 ~A~~~~~~A~~~--~~~~a~~~lg~~~~~-------~~~~-------~~A~~~~~~a~~-~--~~~~a~~~Lg~~~~~g~ 183 (342)
+|+..|++++.. +++.+++++|.++.. .|++ ++|+..|++|+. . +++.++..+|.++. .
T Consensus 34 ~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~--~ 111 (308)
T 2ond_A 34 RVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE--S 111 (308)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH--H
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHH--h
Confidence 688899999885 699999999998863 5775 999999999997 3 67889999999999 8
Q ss_pred ccCHHHHHHHHHHHHHc--CCHH-HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCccc
Q 019340 184 PANAEEAVKLLYQASIA--GHVR-AQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG--YVRAMYNTSLCYSFGEGLPLS 258 (342)
Q Consensus 184 ~~~~~~A~~~~~~a~~~--~~~~-a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~y~~g~g~~~~ 258 (342)
.+++++|...|+++++. .++. ++.++|.++.. .+++++|+..|++|++.. ....+...+.+.....| +
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~---~ 184 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARR----AEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSK---D 184 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHH----HHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSC---C
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHH----hcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcC---C
Confidence 88999999999999985 4565 99999999986 678999999999999864 45555555555322234 9
Q ss_pred HHHHHHHHHHHHHc--CCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHc---Cc---HHHHHHHHHHHhhcChhcHHHHHH
Q 019340 259 HRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRA---GE---TAADHVKNVILQQLSATSRDRAML 330 (342)
Q Consensus 259 ~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~---~~---~~a~~~~~~~~~~~~~~~~~~a~~ 330 (342)
+++|+.+|+++++. +++..+.++|.++...|++++|+.+|++++.. .+ ......+..+. ...++.+.+..
T Consensus 185 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~--~~~g~~~~a~~ 262 (308)
T 2ond_A 185 KSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFE--SNIGDLASILK 262 (308)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHH--HHHSCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH--HHcCCHHHHHH
Confidence 99999999999875 67899999999999999999999999999995 32 23333333333 34578899999
Q ss_pred HHHhhhcCCCC
Q 019340 331 VVDSWRAMPSL 341 (342)
Q Consensus 331 ~~~~~~~~~~~ 341 (342)
+.++..+..|.
T Consensus 263 ~~~~a~~~~p~ 273 (308)
T 2ond_A 263 VEKRRFTAFRE 273 (308)
T ss_dssp HHHHHHHHTTT
T ss_pred HHHHHHHHccc
Confidence 99888776664
No 76
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.66 E-value=2.9e-15 Score=125.73 Aligned_cols=172 Identities=13% Similarity=0.011 Sum_probs=137.1
Q ss_pred CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC--CHHHHHH----------------HHHHHhcCCCHHHHHHHHH
Q 019340 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVD----------------AGLMYWEMDKKEAAISLYR 161 (342)
Q Consensus 100 ~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~----------------lg~~~~~~~~~~~A~~~~~ 161 (342)
.+..++..|..+.. .+++++|+.+|++++..+ ++.+++. +|.+|...|++++|+.+|+
T Consensus 3 ~~~~~~~~g~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 78 (208)
T 3urz_A 3 SVDEMLQKVSAAIE----AGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYK 78 (208)
T ss_dssp CHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 45667788888888 589999999999999874 6778888 9999999999999999999
Q ss_pred HHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHH--cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCC
Q 019340 162 QAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASI--AGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG 237 (342)
Q Consensus 162 ~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~~ 237 (342)
++++. +++.+++++|.+|. ..+++++|+.+|+++++ ++++.+++++|.+|.... ..+...+...|.++....
T Consensus 79 ~al~~~p~~~~~~~~lg~~~~--~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~--~~~~~~~~~~~~~~~~~~ 154 (208)
T 3urz_A 79 ELLQKAPNNVDCLEACAEMQV--CRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTA--EQEKKKLETDYKKLSSPT 154 (208)
T ss_dssp HHHHHCTTCHHHHHHHHHHHH--HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HHHHHHHHHHHC---CCC
T ss_pred HHHHHCCCCHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHhCCC
Confidence 99865 78999999999999 89999999999999887 568999999999986411 234567778888876554
Q ss_pred C-HHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCC-HHHHHHHHH
Q 019340 238 Y-VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGH-GKAQLEHGL 283 (342)
Q Consensus 238 ~-~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~-~~a~~~Lg~ 283 (342)
. ..+++++|.++.. .+++++|+.+|+++++..+ ..+...|..
T Consensus 155 ~~~~a~~~~g~~~~~----~~~~~~A~~~~~~al~l~P~~~~~~~l~~ 198 (208)
T 3urz_A 155 KMQYARYRDGLSKLF----TTRYEKARNSLQKVILRFPSTEAQKTLDK 198 (208)
T ss_dssp HHHHHHHHHHHHHHH----HHTHHHHHHHHHHHTTTSCCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 3 2467888888865 4499999999999998744 444444444
No 77
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.66 E-value=1.1e-14 Score=123.49 Aligned_cols=191 Identities=14% Similarity=0.064 Sum_probs=152.6
Q ss_pred CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC---CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHH
Q 019340 134 RGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL---GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQ 208 (342)
Q Consensus 134 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~ 208 (342)
..++.+++.+|.++...|++++|+.+|+++++. .++.+++++|.++. ..+++++|+.+|+++++. .++.+++.
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~--~~~~~~~A~~~~~~al~~~p~~~~~~~~ 81 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCAD--NIKKYKEAADYFDIAIKKNYNLANAYIG 81 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHTTCSHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHH--HhhcHHHHHHHHHHHHHhCcchHHHHHH
Confidence 457899999999999999999999999999864 57889999999999 899999999999999885 47899999
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCC----H
Q 019340 209 LALCLHRGRGVDFNLQEAARWYLRAAEG--GYV-------RAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGH----G 275 (342)
Q Consensus 209 lg~~~~~g~~~~~~~~~A~~~~~~A~~~--~~~-------~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~----~ 275 (342)
+|.+|.. .+++++|+.+|+++++. .++ .+++++|.++.. .+++++|+.+|+++++.++ +
T Consensus 82 l~~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~p~~~~~ 153 (228)
T 4i17_A 82 KSAAYRD----MKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQ----AGNIEKAEENYKHATDVTSKKWKT 153 (228)
T ss_dssp HHHHHHH----TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHTTSSCHHHHH
T ss_pred HHHHHHH----cccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHH----hccHHHHHHHHHHHHhcCCCcccH
Confidence 9999998 78999999999999986 455 669999999965 3399999999999998754 4
Q ss_pred HHHHHHHHHhhhcCCHHHHHHHHHHHHHcCcHHHHHHHHHHHhhcChhcHHHHHHHHHhhhcCCCC
Q 019340 276 KAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPSL 341 (342)
Q Consensus 276 ~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 341 (342)
.+++++|.+|...| ..++.++...+..+.......... ..+..++|...+++..+..|.
T Consensus 154 ~~~~~l~~~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~~~A~~~~~~a~~l~p~ 212 (228)
T 4i17_A 154 DALYSLGVLFYNNG-----ADVLRKATPLASSNKEKYASEKAK--ADAAFKKAVDYLGEAVTLSPN 212 (228)
T ss_dssp HHHHHHHHHHHHHH-----HHHHHHHGGGTTTCHHHHHHHHHH--HHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHH-----HHHHHHHHhcccCCHHHHHHHHHH--HHHHHHHHHHHHHHHhhcCCC
Confidence 78899999997654 445566666543333333222222 235567788877777766664
No 78
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.65 E-value=8.2e-15 Score=129.21 Aligned_cols=227 Identities=16% Similarity=0.086 Sum_probs=174.7
Q ss_pred CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC-------C---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC---
Q 019340 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR-------G---STLAMVDAGLMYWEMDKKEAAISLYRQAAVL--- 166 (342)
Q Consensus 100 ~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~-------~---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--- 166 (342)
.+.+++.+|.+|.. .+++++|+.+|+++++. . ...++..+|.+|...|++++|+.+|+++++.
T Consensus 26 ~~~~~~~l~~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 101 (311)
T 3nf1_A 26 RLRTLHNLVIQYAS----QGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREK 101 (311)
T ss_dssp HHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 67899999999998 58999999999999983 2 4567899999999999999999999999864
Q ss_pred -------CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc----------CCHHHHHHHHHHHhcCCCCCCCHHHHHHH
Q 019340 167 -------GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA----------GHVRAQYQLALCLHRGRGVDFNLQEAARW 229 (342)
Q Consensus 167 -------~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~----------~~~~a~~~lg~~~~~g~~~~~~~~~A~~~ 229 (342)
....++.++|.+|. ..+++++|+.+|+++++. ....++.++|.+|.. .+++++|+.+
T Consensus 102 ~~~~~~~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~ 175 (311)
T 3nf1_A 102 TLGKDHPAVAATLNNLAVLYG--KRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQN----QGKYEEVEYY 175 (311)
T ss_dssp HHCTTCHHHHHHHHHHHHHHH--TTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHT----TTCHHHHHHH
T ss_pred HhCCCChHHHHHHHHHHHHHH--HcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH----cCCHHHHHHH
Confidence 23578899999999 899999999999998864 245778999999988 7899999999
Q ss_pred HHHHHHC--------C--CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcC-----------------CHHHHHHHH
Q 019340 230 YLRAAEG--------G--YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCG-----------------HGKAQLEHG 282 (342)
Q Consensus 230 ~~~A~~~--------~--~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-----------------~~~a~~~Lg 282 (342)
|+++++. . ...+++.+|.+|.. .+++++|+.+|+++++.. ....+..++
T Consensus 176 ~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (311)
T 3nf1_A 176 YQRALEIYQTKLGPDDPNVAKTKNNLASCYLK----QGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECK 251 (311)
T ss_dssp HHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhc
Confidence 9999875 2 34578899999965 349999999999998631 122334555
Q ss_pred HHhhhcCCHHHHHHHHHHHHHcCcHHHHHHHHHHHhhcChhcHHHHHHHHHhhhcCCC
Q 019340 283 LGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPS 340 (342)
Q Consensus 283 ~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 340 (342)
..+...+.+.+|..+++.+....+..+.....+...+...++.++|...+++..+..|
T Consensus 252 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~ 309 (311)
T 3nf1_A 252 GKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRK 309 (311)
T ss_dssp ------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred CchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence 5556677888889999999988887777777777777888999999999988766544
No 79
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.64 E-value=1.4e-14 Score=117.51 Aligned_cols=157 Identities=17% Similarity=0.136 Sum_probs=90.8
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHh
Q 019340 139 AMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLALCLH 214 (342)
Q Consensus 139 a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~ 214 (342)
+++.+|.++...|++++|+.+|+++++. .++.+++.+|.++. ..+++++|+.+|+++++. .++.++..+|.++.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYV--KTGAVDRGTELLERSLADAPDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHH--HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 3444455555555555555555554432 34455555555555 445555555555554442 34455555555554
Q ss_pred cCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhhcCC
Q 019340 215 RGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGE 290 (342)
Q Consensus 215 ~g~~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~ 290 (342)
. .+++++|+.+|++++.. .++.+++.+|.+|.. . +++++|+.+|++++.. .++.++..+|.++...|+
T Consensus 88 ~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~-~---~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 159 (186)
T 3as5_A 88 Q----VQKYDLAVPLLIKVAEANPINFNVRFRLGVALDN-L---GRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGR 159 (186)
T ss_dssp H----HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-T---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred H----hcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHH-c---CcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCC
Confidence 4 44555555555555443 345566666666643 2 2677777777777664 456777888888888888
Q ss_pred HHHHHHHHHHHHHcC
Q 019340 291 MMKAVVYLELATRAG 305 (342)
Q Consensus 291 ~~~A~~~~~~a~~~~ 305 (342)
+++|..+|+++++..
T Consensus 160 ~~~A~~~~~~~~~~~ 174 (186)
T 3as5_A 160 HEEALPHFKKANELD 174 (186)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC
Confidence 888888888887654
No 80
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.64 E-value=3.4e-15 Score=147.40 Aligned_cols=164 Identities=15% Similarity=0.077 Sum_probs=109.3
Q ss_pred cCCHHHHHHHHHHHH--------hC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHHcCCcc
Q 019340 118 RKNLDKALDSFLKGA--------AR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAV--LGDPAGQFNLGISYLQAQPA 185 (342)
Q Consensus 118 ~~~~~~A~~~~~~A~--------~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~Lg~~~~~g~~~ 185 (342)
.+++++|++.|++++ +. +++.+++.+|.+|...|++++|+..|+++++ .+++.+++++|.+|. ..+
T Consensus 404 ~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~--~~g 481 (681)
T 2pzi_A 404 LSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAEL--LTG 481 (681)
T ss_dssp TCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH--HHT
T ss_pred ccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHH--HcC
Confidence 357777777777777 43 3566777777777777777777777777764 367777777777777 677
Q ss_pred CHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHH
Q 019340 186 NAEEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQ 261 (342)
Q Consensus 186 ~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~ 261 (342)
++++|+..|+++++. +++.+++++|.+|.. .+++++ +.+|++|++. +++.+++++|.+|.. .| ++++
T Consensus 482 ~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~----~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~-~g---~~~~ 552 (681)
T 2pzi_A 482 DYDSATKHFTEVLDTFPGELAPKLALAATAEL----AGNTDE-HKFYQTVWSTNDGVISAAFGLARARSA-EG---DRVG 552 (681)
T ss_dssp CHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHH----HTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHH-TT---CHHH
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----cCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHH-cC---CHHH
Confidence 777777777776653 567777777777766 556666 7777777654 466777777777754 22 7777
Q ss_pred HHHHHHHHHHc--CCHHHHHHHHHHhhhcCCHH
Q 019340 262 ARKWMKRAADC--GHGKAQLEHGLGLFTEGEMM 292 (342)
Q Consensus 262 A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~ 292 (342)
|+.+|+++++. ++..+++++|.++...++.+
T Consensus 553 A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~ 585 (681)
T 2pzi_A 553 AVRTLDEVPPTSRHFTTARLTSAVTLLSGRSTS 585 (681)
T ss_dssp HHHHHHTSCTTSTTHHHHHHHHHHHTC------
T ss_pred HHHHHHhhcccCcccHHHHHHHHHHHHccCCCC
Confidence 77777777655 34666777777776655533
No 81
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.64 E-value=1.4e-15 Score=150.18 Aligned_cols=139 Identities=14% Similarity=0.048 Sum_probs=64.4
Q ss_pred CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHH
Q 019340 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNL 175 (342)
Q Consensus 100 ~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~L 175 (342)
++.+++.+|.+|.. .+++++|+..|+++++. +++.+++++|.+|...|++++|+..|+++++. +++.+++++
T Consensus 432 ~~~~~~~~a~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~l 507 (681)
T 2pzi_A 432 SVELPLMEVRALLD----LGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLAL 507 (681)
T ss_dssp CSHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHH
T ss_pred chhHHHHHHHHHHh----cCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 34444444444444 34444444444444442 34444444444444444444444444444432 344444444
Q ss_pred HHHHHcCCccCHHHHHHHHHHHHH--cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHH
Q 019340 176 GISYLQAQPANAEEAVKLLYQASI--AGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCY 249 (342)
Q Consensus 176 g~~~~~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y 249 (342)
|.+|. ..+++++ +.+|+++++ ++++.+++++|.+|.. .+++++|+.+|++|++. .+..+++++|.++
T Consensus 508 g~~~~--~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~----~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~ 578 (681)
T 2pzi_A 508 AATAE--LAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSA----EGDRVGAVRTLDEVPPTSRHFTTARLTSAVTL 578 (681)
T ss_dssp HHHHH--HHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHT
T ss_pred HHHHH--HcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHH----cCCHHHHHHHHHhhcccCcccHHHHHHHHHHH
Confidence 44444 4444444 444444443 2344444444444444 34444444444444433 2344444444444
No 82
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.63 E-value=1e-14 Score=126.41 Aligned_cols=188 Identities=13% Similarity=0.010 Sum_probs=141.2
Q ss_pred hCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CC---HHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc-----CC
Q 019340 133 ARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GD---PAGQFNLGISYLQAQPANAEEAVKLLYQASIA-----GH 202 (342)
Q Consensus 133 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~---~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~-----~~ 202 (342)
...++..++.+|..+...|++++|+..|+++++. ++ +.+++.+|.+|. ..+++++|+.+|+++++. ..
T Consensus 11 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~--~~~~~~~A~~~~~~~l~~~p~~~~~ 88 (261)
T 3qky_A 11 RHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYY--QNKEYLLAASEYERFIQIYQIDPRV 88 (261)
T ss_dssp CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHCTTCTTH
T ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHH--HhCcHHHHHHHHHHHHHHCCCCchh
Confidence 3467889999999999999999999999999875 55 889999999999 889999999999999885 23
Q ss_pred HHHHHHHHHHHhcCC----CCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCCHH
Q 019340 203 VRAQYQLALCLHRGR----GVDFNLQEAARWYLRAAEGG--YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGK 276 (342)
Q Consensus 203 ~~a~~~lg~~~~~g~----~~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~ 276 (342)
+.+++.+|.++.... ...+++++|+.+|+++++.. +..+...+..+.. +......
T Consensus 89 ~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~-------------------~~~~~~~ 149 (261)
T 3qky_A 89 PQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRE-------------------LRAKLAR 149 (261)
T ss_dssp HHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHH-------------------HHHHHHH
T ss_pred HHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHH-------------------HHHHHHH
Confidence 678999999986410 01357888888888887642 2222222222211 0111234
Q ss_pred HHHHHHHHhhhcCCHHHHHHHHHHHHHcCc-----HHHHHHHHHHHhhc--------ChhcHHHHHHHHHhhhcCCCC
Q 019340 277 AQLEHGLGLFTEGEMMKAVVYLELATRAGE-----TAADHVKNVILQQL--------SATSRDRAMLVVDSWRAMPSL 341 (342)
Q Consensus 277 a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~-----~~a~~~~~~~~~~~--------~~~~~~~a~~~~~~~~~~~~~ 341 (342)
.++.+|.+|...|++++|+.+|+++++..+ +++...++.++..+ ..++.++|...++++.+..|.
T Consensus 150 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~ 227 (261)
T 3qky_A 150 KQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPD 227 (261)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCC
Confidence 479999999999999999999999998754 35666666666544 348889999999999887775
No 83
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.62 E-value=2.1e-15 Score=119.95 Aligned_cols=133 Identities=15% Similarity=0.142 Sum_probs=68.2
Q ss_pred HHHHHHcCCCCcCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcC
Q 019340 107 WGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQA 182 (342)
Q Consensus 107 lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g 182 (342)
||.++.. ++++++|+..|++++... ++.+++.+|.+|...|++++|+.+|+++++. +++.+++++|.+|.
T Consensus 3 LG~~~~~----~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~-- 76 (150)
T 4ga2_A 3 LGSMRRS----KADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYE-- 76 (150)
T ss_dssp ----CCC----HHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH--
T ss_pred hHHHHHH----cChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH--
Confidence 4555544 455666666666655542 3444555666666666666666666665533 45556666666665
Q ss_pred CccCHHHHHHHHHHHHH--cCCHHHHHHHHHHHhcCCCCCCCHHHHHHH-HHHHHHC--CCHHHHHHHHHHH
Q 019340 183 QPANAEEAVKLLYQASI--AGHVRAQYQLALCLHRGRGVDFNLQEAARW-YLRAAEG--GYVRAMYNTSLCY 249 (342)
Q Consensus 183 ~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~-~~~A~~~--~~~~a~~~lg~~y 249 (342)
..+++++|+.+|+++++ ++++.+++++|.+|.. .+++++|... +++|++. +++.++...+.++
T Consensus 77 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll 144 (150)
T 4ga2_A 77 LEENTDKAVECYRRSVELNPTQKDLVLKIAELLCK----NDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLL 144 (150)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence 55556666666665554 2355555555555544 3333333332 3455443 3444444444444
No 84
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.61 E-value=2.1e-15 Score=119.95 Aligned_cols=139 Identities=19% Similarity=0.109 Sum_probs=112.5
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHH--cCCHHHHHHHHHHHhcCC
Q 019340 142 DAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASI--AGHVRAQYQLALCLHRGR 217 (342)
Q Consensus 142 ~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~ 217 (342)
.||.++...|++++|+..+++++.. .++.+++.||.+|. ..+++++|+.+|+++++ ++++.+++++|.+|..
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~--~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-- 77 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYY--EAKEYDLAKKYICTYINVQERDPKAHRFLGLLYEL-- 77 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHH--HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--
T ss_pred HhHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--
Confidence 4788998999999999999999866 56778899999999 88999999999999877 4689999999999988
Q ss_pred CCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHH-HHHHHHHc--CCHHHHHHHHHHhhhcCC
Q 019340 218 GVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARK-WMKRAADC--GHGKAQLEHGLGLFTEGE 290 (342)
Q Consensus 218 ~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~-~~~~a~~~--~~~~a~~~Lg~~~~~~~~ 290 (342)
.+++++|+.+|+++++. +++.+++++|.+|.. .+++++|.. ++++|++. +++.++...+.++...|+
T Consensus 78 --~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 78 --EENTDKAVECYRRSVELNPTQKDLVLKIAELLCK----NDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp --TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred --cCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 77999999999999886 578999999999865 226666554 56888775 678888888888887775
No 85
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.59 E-value=1.1e-13 Score=112.17 Aligned_cols=158 Identities=16% Similarity=0.139 Sum_probs=141.6
Q ss_pred HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHH
Q 019340 101 AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLG 176 (342)
Q Consensus 101 a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg 176 (342)
+.+++.+|.++.. .+++++|+.+|+++++. .++.+++.+|.++...|++++|+.+++++++. .++.++..+|
T Consensus 8 ~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 83 (186)
T 3as5_A 8 QVYYRDKGISHAK----AGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLG 83 (186)
T ss_dssp HHHHHHHHHHHHH----HTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 5677889999988 58999999999999876 47899999999999999999999999999865 7799999999
Q ss_pred HHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcC
Q 019340 177 ISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFG 252 (342)
Q Consensus 177 ~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g 252 (342)
.++. ..+++++|+.+|+++++. .++.+++.+|.++.. .+++++|+.+|++++.. .++.+++.+|.+|..
T Consensus 84 ~~~~--~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~- 156 (186)
T 3as5_A 84 LTYV--QVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDN----LGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQ- 156 (186)
T ss_dssp HHHH--HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-
T ss_pred HHHH--HhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHH----cCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHH-
Confidence 9999 889999999999998874 688999999999987 77999999999999886 578899999999965
Q ss_pred CCCcccHHHHHHHHHHHHHc
Q 019340 253 EGLPLSHRQARKWMKRAADC 272 (342)
Q Consensus 253 ~g~~~~~~~A~~~~~~a~~~ 272 (342)
.| ++++|+.+++++++.
T Consensus 157 ~~---~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 157 MG---RHEEALPHFKKANEL 173 (186)
T ss_dssp TT---CHHHHHHHHHHHHHH
T ss_pred cC---CHHHHHHHHHHHHHc
Confidence 33 999999999999874
No 86
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.58 E-value=1.9e-13 Score=121.70 Aligned_cols=191 Identities=15% Similarity=0.106 Sum_probs=140.7
Q ss_pred CChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCHHHH
Q 019340 77 TLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAA 156 (342)
Q Consensus 77 ~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~~~~~A 156 (342)
..+++.+|..++.+..+..... ++ +..++++.|+.+|.++ |.+|...|++++|
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~~-----------~~----~~~~~~~~A~~~~~~a------------~~~~~~~g~~~~A 55 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKTS-----------FM----KWKPDYDSAASEYAKA------------AVAFKNAKQLEQA 55 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCC-----------SS----SCSCCHHHHHHHHHHH------------HHHHHHTTCHHHH
T ss_pred ccchHHHHHHHHHHHHHHcccc-----------cc----CCCCCHHHHHHHHHHH------------HHHHHHcCCHHHH
Confidence 4577778877777666655420 01 1236888888888875 5677788888888
Q ss_pred HHHHHHHHhC----CC----HHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc----CC----HHHHHHHHHHHhcCCCCC
Q 019340 157 ISLYRQAAVL----GD----PAGQFNLGISYLQAQPANAEEAVKLLYQASIA----GH----VRAQYQLALCLHRGRGVD 220 (342)
Q Consensus 157 ~~~~~~a~~~----~~----~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~----~~----~~a~~~lg~~~~~g~~~~ 220 (342)
+.+|.++++. ++ ..++.++|.+|. ..+++++|+.+|+++++. ++ ..++.++|.+|..
T Consensus 56 ~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~--~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~----- 128 (307)
T 2ifu_A 56 KDAYLQEAEAHANNRSLFHAAKAFEQAGMMLK--DLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP----- 128 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--HTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-----
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-----
Confidence 8888888754 33 457788888888 778888888888888763 32 4577888888864
Q ss_pred CCHHHHHHHHHHHHHC----CC----HHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc----CC----HHHHHHHHHH
Q 019340 221 FNLQEAARWYLRAAEG----GY----VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC----GH----GKAQLEHGLG 284 (342)
Q Consensus 221 ~~~~~A~~~~~~A~~~----~~----~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~~----~~a~~~Lg~~ 284 (342)
+++++|+.+|++|++. ++ ..++.++|.+|.. .| ++++|+.+|++++.. +. ..++.++|.+
T Consensus 129 g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~-~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~ 204 (307)
T 2ifu_A 129 LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVR-QQ---KFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLV 204 (307)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHH-cC---CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Confidence 4788888888888864 22 4678888888865 33 889999999988764 22 3467788888
Q ss_pred hhhcCCHHHHHHHHHHHHHcCc
Q 019340 285 LFTEGEMMKAVVYLELATRAGE 306 (342)
Q Consensus 285 ~~~~~~~~~A~~~~~~a~~~~~ 306 (342)
+...|++++|+.+|++++ ..+
T Consensus 205 ~~~~g~~~~A~~~~~~al-~~p 225 (307)
T 2ifu_A 205 QLHRADYVAAQKCVRESY-SIP 225 (307)
T ss_dssp HHHTTCHHHHHHHHHHHT-TST
T ss_pred HHHcCCHHHHHHHHHHHh-CCC
Confidence 888899999999999988 643
No 87
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.57 E-value=1.5e-12 Score=118.49 Aligned_cols=248 Identities=13% Similarity=0.027 Sum_probs=176.2
Q ss_pred HHhhCCChhHHhhHHHHHHHHHHhCcCCCH----HHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC----CCH----HH
Q 019340 72 IAASFTLPQLRAASLVCKSWNDALRPLREA----MVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR----GST----LA 139 (342)
Q Consensus 72 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~a----~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~----~~~----~a 139 (342)
+...+..|++.+|...+.+.+...+. ++. .++..+|.+|.. .+++++|+.++++++.. +++ .+
T Consensus 21 a~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 95 (373)
T 1hz4_A 21 AQVAINDGNPDEAERLAKLALEELPP-GWFYSRIVATSVLGEVLHC----KGELTRSLALMQQTEQMARQHDVWHYALWS 95 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCT-TCHHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCC-CchhHHHHHHHHHHHHHHh----cCcHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 33445678888888888777776543 222 367888888887 58999999999998874 333 34
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhC----C------CHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHcC-------C
Q 019340 140 MVDAGLMYWEMDKKEAAISLYRQAAVL----G------DPAGQFNLGISYLQAQPANAEEAVKLLYQASIAG-------H 202 (342)
Q Consensus 140 ~~~lg~~~~~~~~~~~A~~~~~~a~~~----~------~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~~-------~ 202 (342)
+.++|.++...|++++|+.+|+++++. + ...++.++|.++. ..|++++|..+++++++.. .
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~--~~g~~~~A~~~~~~al~~~~~~~~~~~ 173 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLW--AWARLDEAEASARSGIEVLSSYQPQQQ 173 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHTTTSCGGGG
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHH--HhcCHHHHHHHHHHHHHHhhccCcHHH
Confidence 678999999999999999999998753 1 2356778899988 8889999999999987642 2
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC----CC-HHHHH----HHHHHHHcCCCCcccHHHHHHHHHHHHHcC
Q 019340 203 VRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG----GY-VRAMY----NTSLCYSFGEGLPLSHRQARKWMKRAADCG 273 (342)
Q Consensus 203 ~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~----~~-~~a~~----~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~ 273 (342)
..++..+|.++.. .+++++|..+++++... +. ..... .++.++.. .| ++++|..+++++....
T Consensus 174 ~~~~~~la~~~~~----~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g---~~~~A~~~~~~a~~~~ 245 (373)
T 1hz4_A 174 LQCLAMLIQCSLA----RGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQM-TG---DKAAAANWLRHTAKPE 245 (373)
T ss_dssp HHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH-TT---CHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHH-CC---CHHHHHHHHHhCCCCC
Confidence 4678889998887 67899999999998753 22 11111 23333433 33 8999999999887653
Q ss_pred C------HHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCc----H----HHHHHHHHHHhhcChhcHHHHHHHHHhhh
Q 019340 274 H------GKAQLEHGLGLFTEGEMMKAVVYLELATRAGE----T----AADHVKNVILQQLSATSRDRAMLVVDSWR 336 (342)
Q Consensus 274 ~------~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~----~----~a~~~~~~~~~~~~~~~~~~a~~~~~~~~ 336 (342)
. ...+..+|.++...|++++|..+++++++... . .+...++ ..+...++.++|...+++..
T Consensus 246 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la--~~~~~~g~~~~A~~~l~~al 320 (373)
T 1hz4_A 246 FANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLN--QLYWQAGRKSDAQRVLLDAL 320 (373)
T ss_dssp CTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHHHHHTCHHHHHHHHHHHH
T ss_pred CCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHH--HHHHHhCCHHHHHHHHHHHH
Confidence 2 23567889999999999999999998876521 1 2333333 33344567777777666543
No 88
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.57 E-value=3.3e-14 Score=123.29 Aligned_cols=211 Identities=15% Similarity=0.059 Sum_probs=156.2
Q ss_pred cCCHHHHHHHHHHHHhC-------C---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC----------CCHHHHHHHHH
Q 019340 118 RKNLDKALDSFLKGAAR-------G---STLAMVDAGLMYWEMDKKEAAISLYRQAAVL----------GDPAGQFNLGI 177 (342)
Q Consensus 118 ~~~~~~A~~~~~~A~~~-------~---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----------~~~~a~~~Lg~ 177 (342)
.+++++|+.+|++|++. + .+.++..+|.+|...|++++|+.+|+++++. ..+.++.++|.
T Consensus 14 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~ 93 (283)
T 3edt_B 14 LVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAV 93 (283)
T ss_dssp CSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence 57888888888888773 2 4567899999999999999999999999854 23568999999
Q ss_pred HHHcCCccCHHHHHHHHHHHHHc----------CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--------C--
Q 019340 178 SYLQAQPANAEEAVKLLYQASIA----------GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--------G-- 237 (342)
Q Consensus 178 ~~~~g~~~~~~~A~~~~~~a~~~----------~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~--------~-- 237 (342)
+|. ..+++++|+.+|+++++. ....++.++|.+|.. .+++++|+.+|+++++. .
T Consensus 94 ~~~--~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~ 167 (283)
T 3edt_B 94 LYG--KRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQN----QGKAEEVEYYYRRALEIYATRLGPDDPN 167 (283)
T ss_dssp HHH--TTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHT----TTCHHHHHHHHHHHHHHHHHHSCTTCHH
T ss_pred HHH--HhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhcCCCCHH
Confidence 999 899999999999998864 246788999999987 77999999999999875 2
Q ss_pred CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcC-----------CHHHHHHHHHHhhhcC------CHHHHHHHHHH
Q 019340 238 YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCG-----------HGKAQLEHGLGLFTEG------EMMKAVVYLEL 300 (342)
Q Consensus 238 ~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-----------~~~a~~~Lg~~~~~~~------~~~~A~~~~~~ 300 (342)
...++.++|.+|.. .+++++|+.+|++++... ....+..++..+...+ .+.++..+++.
T Consensus 168 ~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (283)
T 3edt_B 168 VAKTKNNLASCYLK----QGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKA 243 (283)
T ss_dssp HHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------C
T ss_pred HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHh
Confidence 35678899999965 339999999999998741 2334556666555433 34455555554
Q ss_pred HHHcCcHHHHHHHHHHHhhcChhcHHHHHHHHHhhhcC
Q 019340 301 ATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRAM 338 (342)
Q Consensus 301 a~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 338 (342)
.....+..+.....+...+...++.++|...+++..+.
T Consensus 244 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 244 CKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 44444555555555666666779999999998887653
No 89
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.55 E-value=3.3e-13 Score=114.46 Aligned_cols=177 Identities=11% Similarity=0.005 Sum_probs=122.4
Q ss_pred CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC--C---HHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCH---
Q 019340 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--S---TLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDP--- 169 (342)
Q Consensus 100 ~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~---~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~--- 169 (342)
.+..++.+|..+.. .+++++|+..|++++... + ..+++.+|.+|...|++++|+..|+++++. +++
T Consensus 3 ~~~~~~~~a~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~ 78 (225)
T 2yhc_A 3 PPNEIYATAQQKLQ----DGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNID 78 (225)
T ss_dssp CHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHH
T ss_pred CHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHH
Confidence 46788888988888 589999999999988742 2 468889999999999999999999998864 333
Q ss_pred HHHHHHHHHHHcC----------------CccCHHHHHHHHHHHHHc--CCHH---HHHHHHHHHhcCCCCCCCHHHHHH
Q 019340 170 AGQFNLGISYLQA----------------QPANAEEAVKLLYQASIA--GHVR---AQYQLALCLHRGRGVDFNLQEAAR 228 (342)
Q Consensus 170 ~a~~~Lg~~~~~g----------------~~~~~~~A~~~~~~a~~~--~~~~---a~~~lg~~~~~g~~~~~~~~~A~~ 228 (342)
.+++.+|.++... ..+++++|+..|+++++. +++. +...++.+...
T Consensus 79 ~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~------------- 145 (225)
T 2yhc_A 79 YVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDR------------- 145 (225)
T ss_dssp HHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHH-------------
T ss_pred HHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHH-------------
Confidence 4888888888620 134566666666666553 2222 22222222210
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcC--C---HHHHHHHHHHhhhcCCHHHHHHHHHHHHH
Q 019340 229 WYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCG--H---GKAQLEHGLGLFTEGEMMKAVVYLELATR 303 (342)
Q Consensus 229 ~~~~A~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~---~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~ 303 (342)
.....+.+|.+|.. .+++.+|+..|+++++.. + ..+++.+|.+|...|++++|+.+++++..
T Consensus 146 ---------~~~~~~~~a~~~~~----~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~ 212 (225)
T 2yhc_A 146 ---------LAKYEYSVAEYYTE----RGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA 212 (225)
T ss_dssp ---------HHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHHHHH----cCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh
Confidence 01233567777754 338888888888888762 3 25778888888888888888888887776
Q ss_pred cCc
Q 019340 304 AGE 306 (342)
Q Consensus 304 ~~~ 306 (342)
.++
T Consensus 213 ~~~ 215 (225)
T 2yhc_A 213 NSS 215 (225)
T ss_dssp CCS
T ss_pred hCC
Confidence 654
No 90
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.54 E-value=5.4e-14 Score=125.24 Aligned_cols=192 Identities=16% Similarity=0.065 Sum_probs=153.0
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCccCHHHHHHHHHHHH
Q 019340 119 KNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQFNLGISYLQAQPANAEEAVKLLYQAS 198 (342)
Q Consensus 119 ~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~ 198 (342)
+++++|.+++++|...... + ++...+++++|+.+|.++ |.+|. ..+++++|+.+|++++
T Consensus 5 ~~~~eA~~~~~~a~k~~~~------~-~~~~~~~~~~A~~~~~~a------------~~~~~--~~g~~~~A~~~~~~al 63 (307)
T 2ifu_A 5 QKISEAHEHIAKAEKYLKT------S-FMKWKPDYDSAASEYAKA------------AVAFK--NAKQLEQAKDAYLQEA 63 (307)
T ss_dssp HHHHHHHHHHHHHHHHHCC------C-SSSCSCCHHHHHHHHHHH------------HHHHH--HTTCHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHccc------c-ccCCCCCHHHHHHHHHHH------------HHHHH--HcCCHHHHHHHHHHHH
Confidence 5788999999998763211 0 122268999999999987 55777 7899999999999988
Q ss_pred Hc----CC----HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC----CC----HHHHHHHHHHHHcCCCCcccHHHH
Q 019340 199 IA----GH----VRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG----GY----VRAMYNTSLCYSFGEGLPLSHRQA 262 (342)
Q Consensus 199 ~~----~~----~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~----~~----~~a~~~lg~~y~~g~g~~~~~~~A 262 (342)
+. ++ ..++.++|.+|.. .+++++|+.+|++|++. ++ ..++.++|.+|.. | ++++|
T Consensus 64 ~~~~~~~~~~~~a~~~~~lg~~~~~----~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~--g---~~~~A 134 (307)
T 2ifu_A 64 EAHANNRSLFHAAKAFEQAGMMLKD----LQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP--L---DLSKA 134 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHH----TTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT--T---CHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc--C---CHHHH
Confidence 74 23 5688999999987 67899999999999875 33 4678999999965 5 99999
Q ss_pred HHHHHHHHHc----CC----HHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCc------HHHHHHHHHHHhhcChhcHHHH
Q 019340 263 RKWMKRAADC----GH----GKAQLEHGLGLFTEGEMMKAVVYLELATRAGE------TAADHVKNVILQQLSATSRDRA 328 (342)
Q Consensus 263 ~~~~~~a~~~----~~----~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~------~~a~~~~~~~~~~~~~~~~~~a 328 (342)
+.+|++|++. ++ ..++.++|.+|...|++++|+.+|+++++..+ ..+...+..+..++..++.++|
T Consensus 135 ~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A 214 (307)
T 2ifu_A 135 VHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAA 214 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHH
Confidence 9999999875 22 46789999999999999999999999998632 2234556666666777899999
Q ss_pred HHHHHhhhcCCCC
Q 019340 329 MLVVDSWRAMPSL 341 (342)
Q Consensus 329 ~~~~~~~~~~~~~ 341 (342)
...+++.. ..|.
T Consensus 215 ~~~~~~al-~~p~ 226 (307)
T 2ifu_A 215 QKCVRESY-SIPG 226 (307)
T ss_dssp HHHHHHHT-TSTT
T ss_pred HHHHHHHh-CCCC
Confidence 99999988 6653
No 91
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.53 E-value=2e-13 Score=105.02 Aligned_cols=108 Identities=11% Similarity=0.067 Sum_probs=86.3
Q ss_pred CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHH
Q 019340 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNL 175 (342)
Q Consensus 100 ~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~L 175 (342)
.+.++..+|..|.. .+++++|+.+|++|++. .++.+++++|.+|...|++++|+..|+++++. .++.+++++
T Consensus 12 ~a~~~~~~G~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 12 LAQEEKNKGNEYFK----KGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp HHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 45677778888887 57888888888888875 47788888888888888888888888888754 678888888
Q ss_pred HHHHHcCCccCHHHHHHHHHHHHH--cCCHHHHHHHHHHH
Q 019340 176 GISYLQAQPANAEEAVKLLYQASI--AGHVRAQYQLALCL 213 (342)
Q Consensus 176 g~~~~~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~ 213 (342)
|.+|. ..+++++|+.+|+++++ +++++++..|+.|+
T Consensus 88 g~~~~--~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 88 AACLV--AMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHH--HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHH--HCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 88888 78888888888888776 45788888888775
No 92
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.51 E-value=4.3e-12 Score=115.46 Aligned_cols=221 Identities=12% Similarity=-0.055 Sum_probs=167.7
Q ss_pred HHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC---CH----HHHHHHHHHHhcCCCHHHHHHHHHHHHhC----CCH-
Q 019340 102 MVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG---ST----LAMVDAGLMYWEMDKKEAAISLYRQAAVL----GDP- 169 (342)
Q Consensus 102 ~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~----~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----~~~- 169 (342)
.+...+|.++.. .+++++|+.++++++... +. .++..+|.++...|++++|+.++++++.. +++
T Consensus 15 ~~~~~~a~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 90 (373)
T 1hz4_A 15 EFNALRAQVAIN----DGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWH 90 (373)
T ss_dssp HHHHHHHHHHHH----TTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHH----CCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHH
Confidence 456677888877 589999999999999852 33 26789999999999999999999998853 444
Q ss_pred ---HHHHHHHHHHHcCCccCHHHHHHHHHHHHHc----C------CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC
Q 019340 170 ---AGQFNLGISYLQAQPANAEEAVKLLYQASIA----G------HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG 236 (342)
Q Consensus 170 ---~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~----~------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~ 236 (342)
.++.++|.++. ..|++++|+.+|+++++. + ...++.++|.++.. .+++++|..+++++++.
T Consensus 91 ~~~~~~~~la~~~~--~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~ 164 (373)
T 1hz4_A 91 YALWSLIQQSEILF--AQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWA----WARLDEAEASARSGIEV 164 (373)
T ss_dssp HHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHH
Confidence 45788999999 899999999999998763 1 24567889999987 77999999999999875
Q ss_pred C-------CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc----CC-HHHH----HHHHHHhhhcCCHHHHHHHHHH
Q 019340 237 G-------YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC----GH-GKAQ----LEHGLGLFTEGEMMKAVVYLEL 300 (342)
Q Consensus 237 ~-------~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~~-~~a~----~~Lg~~~~~~~~~~~A~~~~~~ 300 (342)
. ...++.++|.++.. .+++++|..+++++... +. .... ..++.++...|++++|..++++
T Consensus 165 ~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 240 (373)
T 1hz4_A 165 LSSYQPQQQLQCLAMLIQCSLA----RGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRH 240 (373)
T ss_dssp TTTSCGGGGHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhccCcHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 2 24678899999865 33999999999999764 22 1111 1344568899999999999999
Q ss_pred HHHcCcHH----HHHHHHHHHhhcChhcHHHHHHHHHhhh
Q 019340 301 ATRAGETA----ADHVKNVILQQLSATSRDRAMLVVDSWR 336 (342)
Q Consensus 301 a~~~~~~~----a~~~~~~~~~~~~~~~~~~a~~~~~~~~ 336 (342)
+++..+.. ...........+..++.++|...+++..
T Consensus 241 a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~ 280 (373)
T 1hz4_A 241 TAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELN 280 (373)
T ss_dssp SCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 98764321 1122333344455578888887776653
No 93
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.50 E-value=1.5e-11 Score=125.54 Aligned_cols=211 Identities=11% Similarity=0.010 Sum_probs=133.1
Q ss_pred CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCC-CHHHHHHHHH
Q 019340 99 REAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLG-DPAGQFNLGI 177 (342)
Q Consensus 99 ~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~-~~~a~~~Lg~ 177 (342)
..+..++.+|..+.. .+++++|++.|.+| ++++++.++|.++...|++++|+++|..|.+.. ++.....+|.
T Consensus 1103 n~p~vWsqLAKAql~----~G~~kEAIdsYiKA---dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~Laf 1175 (1630)
T 1xi4_A 1103 NEPAVWSQLAKAQLQ----KGMVKEAIDSYIKA---DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIF 1175 (1630)
T ss_pred CCHHHHHHHHHHHHh----CCCHHHHHHHHHhc---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHH
Confidence 456777777877777 37788888888775 777777778888877788888888887766442 2222333444
Q ss_pred HHHcCCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCcc
Q 019340 178 SYLQAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPL 257 (342)
Q Consensus 178 ~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~y~~g~g~~~ 257 (342)
+|. ..+++++ ++.| ++..+...+..+|.+++. .+++++|..+|.+| .-|..++.+|..- |
T Consensus 1176 aYA--Kl~rlee-le~f---I~~~n~ad~~~iGd~le~----eg~YeeA~~~Y~kA------~ny~rLA~tLvkL-g--- 1235 (1630)
T 1xi4_A 1176 ALA--KTNRLAE-LEEF---INGPNNAHIQQVGDRCYD----EKMYDAAKLLYNNV------SNFGRLASTLVHL-G--- 1235 (1630)
T ss_pred HHH--hhcCHHH-HHHH---HhCCCHHHHHHHHHHHHh----cCCHHHHHHHHHhh------hHHHHHHHHHHHh-C---
Confidence 444 3333332 2222 122334455566666665 55666666666664 3555566665431 2
Q ss_pred cHHHHHHHHHHHHHc---------------------------CCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCcHHH-
Q 019340 258 SHRQARKWMKRAADC---------------------------GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAA- 309 (342)
Q Consensus 258 ~~~~A~~~~~~a~~~---------------------------~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~~a- 309 (342)
++++|++.+++|.+. .+++-+..++..|...|.+++|+.+++.++.+++...
T Consensus 1236 e~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~g 1315 (1630)
T 1xi4_A 1236 EYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMG 1315 (1630)
T ss_pred CHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhH
Confidence 566666666555221 2455666888888999999999999999988865443
Q ss_pred -HHHHHHHHhhcChhcHHHHHHHHHhhh
Q 019340 310 -DHVKNVILQQLSATSRDRAMLVVDSWR 336 (342)
Q Consensus 310 -~~~~~~~~~~~~~~~~~~a~~~~~~~~ 336 (342)
.+.++.+...-..+...++.+++..-.
T Consensus 1316 mftELaiLyaKy~peklmEhlk~f~~ri 1343 (1630)
T 1xi4_A 1316 MFTELAILYSKFKPQKMREHLELFWSRV 1343 (1630)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhc
Confidence 444777777777777777766554433
No 94
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.49 E-value=3.6e-13 Score=130.03 Aligned_cols=147 Identities=18% Similarity=-0.005 Sum_probs=86.4
Q ss_pred CCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHH
Q 019340 119 KNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLL 194 (342)
Q Consensus 119 ~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~ 194 (342)
+++++|+.+|+++++. +++.+++.+|.+|...|++++|+.+|+++++. +++.+++++|.+|. ..+++++|+.+|
T Consensus 3 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~--~~g~~~~A~~~~ 80 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRW--TQQRHAEAAVLL 80 (568)
T ss_dssp ------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHH--HTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH--HCCCHHHHHHHH
Confidence 5777788888877765 46777777888877778888888888877765 56777777777777 677777777777
Q ss_pred HHHHHc--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHH
Q 019340 195 YQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAA 270 (342)
Q Consensus 195 ~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~ 270 (342)
+++++. +++.+++++|.+|.. .+++++|+.+|+++++. ++..++.++|.+|.... -.+++++|+.+|++++
T Consensus 81 ~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~-~~g~~~~A~~~~~~al 155 (568)
T 2vsy_A 81 QQASDAAPEHPGIALWLGHALED----AGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLC-DWRALDVLSAQVRAAV 155 (568)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-CCTTHHHHHHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh-ccccHHHHHHHHHHHH
Confidence 777663 466677777777765 55666666666666554 34555666666654320 0025666666666655
Q ss_pred Hc
Q 019340 271 DC 272 (342)
Q Consensus 271 ~~ 272 (342)
+.
T Consensus 156 ~~ 157 (568)
T 2vsy_A 156 AQ 157 (568)
T ss_dssp HH
T ss_pred hc
Confidence 54
No 95
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.49 E-value=6.7e-13 Score=102.10 Aligned_cols=108 Identities=15% Similarity=0.076 Sum_probs=89.3
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHH
Q 019340 136 STLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLAL 211 (342)
Q Consensus 136 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~ 211 (342)
.+.++.++|..|+..|++++|+.+|+++++. .++.+++++|.+|. ..+++++|+.+|+++++. .++.+++++|.
T Consensus 12 ~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~--~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~ 89 (126)
T 4gco_A 12 LAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLT--KLMEFQRALDDCDTCIRLDSKFIKGYIRKAA 89 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHH--hhccHHHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 3566778899999999999999999998754 77889999999998 888999999999988774 57888888888
Q ss_pred HHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHH
Q 019340 212 CLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCY 249 (342)
Q Consensus 212 ~~~~g~~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y 249 (342)
+|.. .+++++|+.+|+++++. ++..++.+|+.++
T Consensus 90 ~~~~----~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 90 CLVA----MREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHH----CCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 8887 67888888888888775 5777888887764
No 96
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.47 E-value=1.3e-12 Score=126.12 Aligned_cols=180 Identities=16% Similarity=0.025 Sum_probs=130.5
Q ss_pred ChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHH
Q 019340 78 LPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEA 155 (342)
Q Consensus 78 ~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~ 155 (342)
.+++.+|...+.+..+..+. ++.+++.+|.+|.. .+++++|+.+|+++++. +++.+++++|.+|...|++++
T Consensus 2 ~g~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~ 75 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQ--DFVAWLMLADAELG----MGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAE 75 (568)
T ss_dssp -------------------C--CHHHHHHHHHHHHH----HTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHH
T ss_pred CccHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHH
Confidence 46788888888777766544 78999999999998 58999999999999987 478999999999999999999
Q ss_pred HHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Q 019340 156 AISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYL 231 (342)
Q Consensus 156 A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~ 231 (342)
|+.+|+++++. +++.+++++|.+|. ..+++++|+.+|+++++. +++.++.++|.++..-. ..+++++|+..|+
T Consensus 76 A~~~~~~al~~~p~~~~~~~~la~~~~--~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~-~~g~~~~A~~~~~ 152 (568)
T 2vsy_A 76 AAVLLQQASDAAPEHPGIALWLGHALE--DAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLC-DWRALDVLSAQVR 152 (568)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-CCTTHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh-ccccHHHHHHHHH
Confidence 99999999865 78999999999999 889999999999998874 58999999999998710 0178999999999
Q ss_pred HHHHCC--CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH
Q 019340 232 RAAEGG--YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAAD 271 (342)
Q Consensus 232 ~A~~~~--~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~ 271 (342)
++++.+ +..++..++ . .........+..|..+...
T Consensus 153 ~al~~~p~~~~~~~~l~----~-~~~~~~~~~~~~~~~~~~~ 189 (568)
T 2vsy_A 153 AAVAQGVGAVEPFAFLS----E-DASAAEQLACARTRAQAIA 189 (568)
T ss_dssp HHHHHTCCCSCHHHHTT----S-CCCHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCcccChHHHhC----C-CCHHHHHHHHHHHHHhccC
Confidence 998864 555666665 1 1112234444555554443
No 97
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.47 E-value=2.8e-13 Score=110.30 Aligned_cols=156 Identities=8% Similarity=-0.028 Sum_probs=97.0
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHcC-CHHHHHHHHHHHhc
Q 019340 139 AMVDAGLMYWEMDKKEAAISLYRQAAV--LGDPAGQFNLGISYLQAQPANAEEAVKLLYQASIAG-HVRAQYQLALCLHR 215 (342)
Q Consensus 139 a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~~-~~~a~~~lg~~~~~ 215 (342)
..+.+|..+...|++++|+..|+++++ ++++.+++.+|.++. ..|++++|+.+|++++... ++.....++.+...
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~--~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLL--ETKQFELAQELLATIPLEYQDNSYKSLIAKLELH 85 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHH--HTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH--HCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHH
Confidence 345566666666666666666666543 366666666666666 5666666666666654432 44444444433221
Q ss_pred CCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCC----HHHHHHHHHHhhhcC
Q 019340 216 GRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGH----GKAQLEHGLGLFTEG 289 (342)
Q Consensus 216 g~~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~----~~a~~~Lg~~~~~~~ 289 (342)
+. .+..+|+..|+++++. +++.+++++|.++.. .| ++++|+.+|+++++..+ ..++.+||.++...|
T Consensus 86 ~~---~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~-~g---~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g 158 (176)
T 2r5s_A 86 QQ---AAESPELKRLEQELAANPDNFELACELAVQYNQ-VG---RDEEALELLWNILKVNLGAQDGEVKKTFMDILSALG 158 (176)
T ss_dssp HH---HTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHC
T ss_pred hh---cccchHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cc---cHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhC
Confidence 10 0112356777777654 467777777777754 22 78888888888776532 457788888888888
Q ss_pred CHHHHHHHHHHHHH
Q 019340 290 EMMKAVVYLELATR 303 (342)
Q Consensus 290 ~~~~A~~~~~~a~~ 303 (342)
+.++|+.+|++++.
T Consensus 159 ~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 159 QGNAIASKYRRQLY 172 (176)
T ss_dssp SSCHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHH
Confidence 88888888887763
No 98
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.47 E-value=7.7e-13 Score=116.63 Aligned_cols=172 Identities=8% Similarity=-0.062 Sum_probs=137.5
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHHcCCccCHHHHHHHHHHHH
Q 019340 121 LDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAV--LGDPAGQFNLGISYLQAQPANAEEAVKLLYQAS 198 (342)
Q Consensus 121 ~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~ 198 (342)
.+.-..++.... .++.+.++.+|..+...|++++|+..|+++++ ++++.+++.||.++. ..|++++|+.+|++++
T Consensus 102 ~~~l~~~l~~~l-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~--~~g~~~~A~~~l~~~~ 178 (287)
T 3qou_A 102 EEAIRALLDXVL-PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLI--ALNRSEDAEAVLXTIP 178 (287)
T ss_dssp HHHHHHHHHHHS-CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH--HTTCHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHc-CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHH--HCCCHHHHHHHHHhCc
Confidence 333444444433 56788899999999999999999999999875 488999999999999 8899999999999976
Q ss_pred Hc--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--
Q 019340 199 IA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC-- 272 (342)
Q Consensus 199 ~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~-- 272 (342)
.. +........+..+.. .++..+|+..|++++.. +++.+++++|.+|... | ++++|+..|++++..
T Consensus 179 ~~~p~~~~~~~~~~~~l~~----~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~-g---~~~~A~~~l~~~l~~~p 250 (287)
T 3qou_A 179 LQDQDTRYQGLVAQIELLX----QAADTPEIQQLQQQVAENPEDAALATQLALQLHQV-G---RNEEALELLFGHLRXDL 250 (287)
T ss_dssp GGGCSHHHHHHHHHHHHHH----HHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHHCT
T ss_pred hhhcchHHHHHHHHHHHHh----hcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHc-c---cHHHHHHHHHHHHhccc
Confidence 53 334445555555544 33566789999998875 6889999999999653 3 999999999999886
Q ss_pred CC--HHHHHHHHHHhhhcCCHHHHHHHHHHHHH
Q 019340 273 GH--GKAQLEHGLGLFTEGEMMKAVVYLELATR 303 (342)
Q Consensus 273 ~~--~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~ 303 (342)
++ ..++.+||.++...|+.++|..+|++++.
T Consensus 251 ~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 251 TAADGQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp TGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 33 67899999999999999999999999875
No 99
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.46 E-value=3.5e-12 Score=122.03 Aligned_cols=208 Identities=10% Similarity=-0.068 Sum_probs=163.7
Q ss_pred HHHHHHHHHHHhC--CCHHHHHHHHHHHhc-------CCCHH-------HHHHHHHHHHh---CCCHHHHHHHHHHHHcC
Q 019340 122 DKALDSFLKGAAR--GSTLAMVDAGLMYWE-------MDKKE-------AAISLYRQAAV---LGDPAGQFNLGISYLQA 182 (342)
Q Consensus 122 ~~A~~~~~~A~~~--~~~~a~~~lg~~~~~-------~~~~~-------~A~~~~~~a~~---~~~~~a~~~Lg~~~~~g 182 (342)
++++..|++|+.. +++.+++.+|.++.. .|+++ +|+..|++|+. ++++..++.+|.++.
T Consensus 255 ~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~-- 332 (530)
T 2ooe_A 255 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE-- 332 (530)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHH--
Confidence 4788999999985 689999999999985 78876 99999999986 377999999999998
Q ss_pred CccCHHHHHHHHHHHHHcC--CH-HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCcc
Q 019340 183 QPANAEEAVKLLYQASIAG--HV-RAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG--YVRAMYNTSLCYSFGEGLPL 257 (342)
Q Consensus 183 ~~~~~~~A~~~~~~a~~~~--~~-~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~y~~g~g~~~ 257 (342)
..+++++|...|+++++.. ++ .++..+|.++.. .+++++|...|++|++.. ....+...+.+.....|
T Consensus 333 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~--- 405 (530)
T 2ooe_A 333 SRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARR----AEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSK--- 405 (530)
T ss_dssp HTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTC---
T ss_pred hcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHH----hcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcC---
Confidence 7889999999999999854 44 589999998876 567999999999999864 33444444544222233
Q ss_pred cHHHHHHHHHHHHHc--CCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCc--HH----HHHHHHHHHhhcChhcHHHHH
Q 019340 258 SHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGE--TA----ADHVKNVILQQLSATSRDRAM 329 (342)
Q Consensus 258 ~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~--~~----a~~~~~~~~~~~~~~~~~~a~ 329 (342)
++++|+.+|+++++. +++..+..++.++...|++++|..+|++++...+ ++ .......+. ...++.+.+.
T Consensus 406 ~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e--~~~G~~~~~~ 483 (530)
T 2ooe_A 406 DKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFE--SNIGDLASIL 483 (530)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHH--HHSSCHHHHH
T ss_pred ChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHH--HHcCCHHHHH
Confidence 899999999999876 6789999999999999999999999999998742 22 332222232 2346777788
Q ss_pred HHHHhhhcCCC
Q 019340 330 LVVDSWRAMPS 340 (342)
Q Consensus 330 ~~~~~~~~~~~ 340 (342)
.+.++.++..|
T Consensus 484 ~~~~r~~~~~p 494 (530)
T 2ooe_A 484 KVEKRRFTAFR 494 (530)
T ss_dssp HHHHHHHHHTH
T ss_pred HHHHHHHHHCc
Confidence 77777665444
No 100
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.45 E-value=2.8e-12 Score=108.70 Aligned_cols=181 Identities=12% Similarity=-0.068 Sum_probs=129.9
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CC---HHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--CCH---HH
Q 019340 136 STLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GD---PAGQFNLGISYLQAQPANAEEAVKLLYQASIA--GHV---RA 205 (342)
Q Consensus 136 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~---~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~---~a 205 (342)
.+.+++.+|..+...|++++|+..|+++++. ++ +.+++.+|.+|. ..+++++|+..|+++++. +++ .+
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~--~~~~~~~A~~~~~~~l~~~P~~~~~~~a 80 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY--KNADLPLAQAAIDRFIRLNPTHPNIDYV 80 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHHCcCCCcHHHH
Confidence 5678999999999999999999999999864 33 479999999999 899999999999999874 333 58
Q ss_pred HHHHHHHHhcCC--------------CCCCCHHHHHHHHHHHHHCC--CHHH---HHHHHHHHHcCCCCcccHHHHHHHH
Q 019340 206 QYQLALCLHRGR--------------GVDFNLQEAARWYLRAAEGG--YVRA---MYNTSLCYSFGEGLPLSHRQARKWM 266 (342)
Q Consensus 206 ~~~lg~~~~~g~--------------~~~~~~~~A~~~~~~A~~~~--~~~a---~~~lg~~y~~g~g~~~~~~~A~~~~ 266 (342)
++.+|.++.... ...+++++|+..|+++++.. +..+ ...++.+..
T Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~---------------- 144 (225)
T 2yhc_A 81 MYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKD---------------- 144 (225)
T ss_dssp HHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHH----------------
T ss_pred HHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHH----------------
Confidence 999999986410 00234555555555555431 2111 111111110
Q ss_pred HHHHHcCCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCcH-----HHHHHHHHHHhhcChhcHHHHHHHHHhhhcCCCC
Q 019340 267 KRAADCGHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGET-----AADHVKNVILQQLSATSRDRAMLVVDSWRAMPSL 341 (342)
Q Consensus 267 ~~a~~~~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~-----~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 341 (342)
......+.+|.+|...|++++|+..|+++++..+. ++...++.+. ...++.++|+...+.+...+|.
T Consensus 145 ------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~--~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 145 ------RLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAY--RQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp ------HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHH--HHTTCHHHHHHHHHHHHHCCSC
T ss_pred ------HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHH--HHcCCcHHHHHHHHHHHhhCCC
Confidence 00123367899999999999999999999988532 3455555444 5559999999999999888876
Q ss_pred C
Q 019340 342 H 342 (342)
Q Consensus 342 ~ 342 (342)
+
T Consensus 217 ~ 217 (225)
T 2yhc_A 217 T 217 (225)
T ss_dssp C
T ss_pred c
Confidence 4
No 101
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.43 E-value=1.7e-11 Score=108.16 Aligned_cols=154 Identities=11% Similarity=0.030 Sum_probs=94.9
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhCC--CH------HHHHHHHHHHHcCCccCHHHHHHHHHHHHHcC--------CHH
Q 019340 141 VDAGLMYWEMDKKEAAISLYRQAAVLG--DP------AGQFNLGISYLQAQPANAEEAVKLLYQASIAG--------HVR 204 (342)
Q Consensus 141 ~~lg~~~~~~~~~~~A~~~~~~a~~~~--~~------~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~~--------~~~ 204 (342)
...+..+...|++++|+.+++++++.. .. ..++.+|.++. ..+++++|+.+|+++++.. ...
T Consensus 79 ~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVL--KKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHH--TSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 344555555566666666665555431 11 23344555555 5556666666666665421 134
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC-----CC----HHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcC--
Q 019340 205 AQYQLALCLHRGRGVDFNLQEAARWYLRAAEG-----GY----VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCG-- 273 (342)
Q Consensus 205 a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~-----~~----~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-- 273 (342)
+++++|.+|.. .+++++|+.+|++|++. ++ ..+++++|.+|.. .+++++|+.+|+++++..
T Consensus 157 ~~~~lg~~y~~----~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~----~~~y~~Al~~~~kal~~~~~ 228 (293)
T 2qfc_A 157 IENAIANIYAE----NGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYL----DSRYEESLYQVNKAIEISCR 228 (293)
T ss_dssp HHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHH----HhhHHHHHHHHHHHHHHHHh
Confidence 56666666665 55666666666666521 11 2567777777754 227888888888776531
Q ss_pred ------CHHHHHHHHHHhhhcCCHHHH-HHHHHHHHHc
Q 019340 274 ------HGKAQLEHGLGLFTEGEMMKA-VVYLELATRA 304 (342)
Q Consensus 274 ------~~~a~~~Lg~~~~~~~~~~~A-~~~~~~a~~~ 304 (342)
...+++++|.+|...|++++| ..+|++|+..
T Consensus 229 ~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 229 INSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp TTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 167788999999999999999 8889988754
No 102
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.42 E-value=4.7e-11 Score=121.93 Aligned_cols=199 Identities=17% Similarity=0.086 Sum_probs=150.2
Q ss_pred cCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCccCHHHHHHHHHHH
Q 019340 118 RKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQFNLGISYLQAQPANAEEAVKLLYQA 197 (342)
Q Consensus 118 ~~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a 197 (342)
.+++++|++++++. +.+.+|+++|..+...|++++|+..|.+| ++++++..+|.++. ..+++++|+++|..+
T Consensus 1089 i~nldrAiE~Aerv---n~p~vWsqLAKAql~~G~~kEAIdsYiKA---dD~say~eVa~~~~--~lGkyEEAIeyL~mA 1160 (1630)
T 1xi4_A 1089 IGNLDRAYEFAERC---NEPAVWSQLAKAQLQKGMVKEAIDSYIKA---DDPSSYMEVVQAAN--TSGNWEELVKYLQMA 1160 (1630)
T ss_pred HhhHHHHHHHHHhc---CCHHHHHHHHHHHHhCCCHHHHHHHHHhc---CChHHHHHHHHHHH--HcCCHHHHHHHHHHH
Confidence 36777788777754 67899999999999999999999999887 89999999999999 889999999999998
Q ss_pred HHcC-CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCCHH
Q 019340 198 SIAG-HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGK 276 (342)
Q Consensus 198 ~~~~-~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~ 276 (342)
.+.. .+.+...+|.+|.. .+++++ ++.| +...+...+..+|..+.. .| ++++|+.+|.++ .
T Consensus 1161 rk~~~e~~Idt~LafaYAK----l~rlee-le~f---I~~~n~ad~~~iGd~le~-eg---~YeeA~~~Y~kA------~ 1222 (1630)
T 1xi4_A 1161 RKKARESYVETELIFALAK----TNRLAE-LEEF---INGPNNAHIQQVGDRCYD-EK---MYDAAKLLYNNV------S 1222 (1630)
T ss_pred HhhcccccccHHHHHHHHh----hcCHHH-HHHH---HhCCCHHHHHHHHHHHHh-cC---CHHHHHHHHHhh------h
Confidence 8754 33455568999887 445664 4433 345566778889999954 33 999999999997 4
Q ss_pred HHHHHHHHhhhcCCHHHHHHHHHHHHHcCcH-------------------------HHHHHHHHHHhhcChhcHHHHHHH
Q 019340 277 AQLEHGLGLFTEGEMMKAVVYLELATRAGET-------------------------AADHVKNVILQQLSATSRDRAMLV 331 (342)
Q Consensus 277 a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~-------------------------~a~~~~~~~~~~~~~~~~~~a~~~ 331 (342)
-+..+|.+|...|++++|++.+++|...... ++......+..+-..+.+++|+.+
T Consensus 1223 ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~L 1302 (1630)
T 1xi4_A 1223 NFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITM 1302 (1630)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 6889999999999999999999998432210 111222333334456777777777
Q ss_pred HHhhhcCCCCC
Q 019340 332 VDSWRAMPSLH 342 (342)
Q Consensus 332 ~~~~~~~~~~~ 342 (342)
++.-+.+.+.|
T Consensus 1303 lE~aL~LeraH 1313 (1630)
T 1xi4_A 1303 LEAALGLERAH 1313 (1630)
T ss_pred HHHHhccChhH
Confidence 77766665543
No 103
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.42 E-value=2.7e-12 Score=113.17 Aligned_cols=159 Identities=14% Similarity=0.043 Sum_probs=135.9
Q ss_pred CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHH
Q 019340 99 REAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFN 174 (342)
Q Consensus 99 ~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~ 174 (342)
.++..++.+|..+.. .+++++|+..|++++.. +++.+++.+|.++...|++++|+.+|++++.. ++......
T Consensus 115 ~~~~~~~~~a~~~~~----~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~ 190 (287)
T 3qou_A 115 REEELXAQQAMQLMQ----ESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLV 190 (287)
T ss_dssp CHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHH
T ss_pred CchhhHHHHHHHHHh----CCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHH
Confidence 467889999999988 58999999999999885 58999999999999999999999999998765 44455555
Q ss_pred HHHHHHcCCccCHHHHHHHHHHHHH--cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CC--HHHHHHHHHH
Q 019340 175 LGISYLQAQPANAEEAVKLLYQASI--AGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GY--VRAMYNTSLC 248 (342)
Q Consensus 175 Lg~~~~~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~--~~--~~a~~~lg~~ 248 (342)
++..+. ..++..+|+..|+++++ +++++++++||.+|.. .+++++|+..|++++.. ++ ..++.+++.+
T Consensus 191 ~~~~l~--~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~----~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~ 264 (287)
T 3qou_A 191 AQIELL--XQAADTPEIQQLQQQVAENPEDAALATQLALQLHQ----VGRNEEALELLFGHLRXDLTAADGQTRXTFQEI 264 (287)
T ss_dssp HHHHHH--HHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHH
T ss_pred HHHHHH--hhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHH----cccHHHHHHHHHHHHhcccccccchHHHHHHHH
Confidence 666566 56677889999999876 5799999999999998 77999999999999986 34 7899999999
Q ss_pred HHcCCCCcccHHHHHHHHHHHHH
Q 019340 249 YSFGEGLPLSHRQARKWMKRAAD 271 (342)
Q Consensus 249 y~~g~g~~~~~~~A~~~~~~a~~ 271 (342)
|.. .| +.++|..+|++++.
T Consensus 265 ~~~-~g---~~~~a~~~~r~al~ 283 (287)
T 3qou_A 265 LAA-LG---TGDALASXYRRQLY 283 (287)
T ss_dssp HHH-HC---TTCHHHHHHHHHHH
T ss_pred HHH-cC---CCCcHHHHHHHHHH
Confidence 954 33 88899999999874
No 104
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.42 E-value=1.8e-12 Score=105.46 Aligned_cols=157 Identities=14% Similarity=-0.018 Sum_probs=126.9
Q ss_pred HHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCC-CHHHHHHHHHH
Q 019340 102 MVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLG-DPAGQFNLGIS 178 (342)
Q Consensus 102 ~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~-~~~a~~~Lg~~ 178 (342)
..++.+|..+.. .+++++|+..|+++++. +++.+++.+|.++...|++++|+..|++++... ++.....++.+
T Consensus 7 ~~~~~~a~~~~~----~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~ 82 (176)
T 2r5s_A 7 EQLLKQVSELLQ----QGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKL 82 (176)
T ss_dssp TTHHHHHHHHHH----TTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHH
Confidence 346778888888 58999999999998875 689999999999999999999999999987654 56665555555
Q ss_pred HHcCCccCHHHHHHHHHHHHH--cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcC
Q 019340 179 YLQAQPANAEEAVKLLYQASI--AGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG----YVRAMYNTSLCYSFG 252 (342)
Q Consensus 179 ~~~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~~----~~~a~~~lg~~y~~g 252 (342)
... ...+..+|+..|+++++ ++++.+++++|.++.. .+++++|+.+|++++... +..++.++|.++..
T Consensus 83 ~~~-~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~- 156 (176)
T 2r5s_A 83 ELH-QQAAESPELKRLEQELAANPDNFELACELAVQYNQ----VGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSA- 156 (176)
T ss_dssp HHH-HHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHH-
T ss_pred HHH-hhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHH-
Confidence 331 11223357999999887 4689999999999988 779999999999999875 25699999999964
Q ss_pred CCCcccHHHHHHHHHHHHH
Q 019340 253 EGLPLSHRQARKWMKRAAD 271 (342)
Q Consensus 253 ~g~~~~~~~A~~~~~~a~~ 271 (342)
.| +.++|+.+|++++.
T Consensus 157 ~g---~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 157 LG---QGNAIASKYRRQLY 172 (176)
T ss_dssp HC---SSCHHHHHHHHHHH
T ss_pred hC---CCCcHHHHHHHHHH
Confidence 33 88999999998864
No 105
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.41 E-value=1.5e-12 Score=103.52 Aligned_cols=95 Identities=12% Similarity=0.077 Sum_probs=57.6
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHH--cCCHHHHHHHHH
Q 019340 136 STLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASI--AGHVRAQYQLAL 211 (342)
Q Consensus 136 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~ 211 (342)
++.+++.+|.++...|++++|+.+|++++.. +++.++++||.+|. ..+++++|+.+|++++. ++++.+++++|.
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~--~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~ 112 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQ--IKEQFQQAADLYAVAFALGKNDYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH--HHccHHHHHHHHHHHHhhCCCCcHHHHHHHH
Confidence 4455666666666666666666666665533 55666666666666 55666666666666554 345666666666
Q ss_pred HHhcCCCCCCCHHHHHHHHHHHHHC
Q 019340 212 CLHRGRGVDFNLQEAARWYLRAAEG 236 (342)
Q Consensus 212 ~~~~g~~~~~~~~~A~~~~~~A~~~ 236 (342)
||.. .+++++|+.+|+++++.
T Consensus 113 ~~~~----lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 113 CQLR----LKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHH----TTCHHHHHHHHHHHHHH
T ss_pred HHHH----cCCHHHHHHHHHHHHHh
Confidence 6655 55566666666666554
No 106
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.41 E-value=2.7e-13 Score=117.88 Aligned_cols=189 Identities=12% Similarity=0.044 Sum_probs=157.5
Q ss_pred HHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHH-------HHHHhcCCCHHHHHHHHHHHHhC--CC---
Q 019340 103 VLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDA-------GLMYWEMDKKEAAISLYRQAAVL--GD--- 168 (342)
Q Consensus 103 a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~l-------g~~~~~~~~~~~A~~~~~~a~~~--~~--- 168 (342)
.+|..|+-+. .+|...|.+.|.++++. +.+++|..+ +.++....+..+++..+++++.. +.
T Consensus 9 ~~~~~~~~~~-----~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a 83 (282)
T 4f3v_A 9 SLFESAVSML-----PMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNA 83 (282)
T ss_dssp HHHHHHHHHT-----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCC
T ss_pred HHHHHHhccc-----CCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhh
Confidence 3455566552 58999999999999986 589999999 88888888999999999998863 11
Q ss_pred ------------------HHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCCCCHHHHHH
Q 019340 169 ------------------PAGQFNLGISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAAR 228 (342)
Q Consensus 169 ------------------~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~ 228 (342)
.+....++.++. ..+++++|.+.|...+.. ++. +++.+|.++.. .+++++|+.
T Consensus 84 ~~~~~g~y~~~~~~v~~r~dl~LayA~~L~--~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~----~~r~~dA~~ 156 (282)
T 4f3v_A 84 RIAIGGLYGDITYPVTSPLAITMGFAACEA--AQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGA----AERWTDVID 156 (282)
T ss_dssp EEECCTTTCCCEEECSSHHHHHHHHHHHHH--HHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHH----TTCHHHHHH
T ss_pred hhccCCcccccccccCCHhHHHHHHHHHHH--HCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHH----cCCHHHHHH
Confidence 345555777777 889999999999987654 456 99999999998 889999999
Q ss_pred HHHHHHHCCC----HHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcC-----CHHHHHHHHHHhhhcCCHHHHHHHHH
Q 019340 229 WYLRAAEGGY----VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCG-----HGKAQLEHGLGLFTEGEMMKAVVYLE 299 (342)
Q Consensus 229 ~~~~A~~~~~----~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-----~~~a~~~Lg~~~~~~~~~~~A~~~~~ 299 (342)
+|+++....+ ..+++++|.++.. .| ++++|+.+|++++... ..++.+++|.++...|+.++|...|+
T Consensus 157 ~l~~a~~~~d~~~~~~a~~~LG~al~~-LG---~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~ 232 (282)
T 4f3v_A 157 QVKSAGKWPDKFLAGAAGVAHGVAAAN-LA---LFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLE 232 (282)
T ss_dssp HHTTGGGCSCHHHHHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHhhccCCcccHHHHHHHHHHHHHH-CC---CHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9998877643 3589999999954 44 9999999999998654 34688999999999999999999999
Q ss_pred HHHHcCcH
Q 019340 300 LATRAGET 307 (342)
Q Consensus 300 ~a~~~~~~ 307 (342)
++...++.
T Consensus 233 ~a~a~~P~ 240 (282)
T 4f3v_A 233 WLQTTHPE 240 (282)
T ss_dssp HHHHHSCC
T ss_pred HHHhcCCc
Confidence 99998776
No 107
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.41 E-value=5.7e-11 Score=105.21 Aligned_cols=236 Identities=8% Similarity=-0.106 Sum_probs=185.3
Q ss_pred HHHHHHHhhCCChhH-HhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC--CHHHHHHH
Q 019340 67 DVLNKIAASFTLPQL-RAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDA 143 (342)
Q Consensus 67 ~~~~~~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~l 143 (342)
+....+.+....+.+ .+|.......+..-++ +..+++.-|.+.... |. .++++++.++.+++..+ +..+++..
T Consensus 34 ~~~~~~~a~~~~~e~s~~aL~~t~~~L~~nP~--~~taWn~R~~~L~~l-~~-~~~~eeL~~~~~~L~~nPk~y~aW~~R 109 (306)
T 3dra_A 34 QIMGLLLALMKAEEYSERALHITELGINELAS--HYTIWIYRFNILKNL-PN-RNLYDELDWCEEIALDNEKNYQIWNYR 109 (306)
T ss_dssp HHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHTC-TT-SCHHHHHHHHHHHHHHCTTCCHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHCcH--HHHHHHHHHHHHHHc-cc-ccHHHHHHHHHHHHHHCcccHHHHHHH
Confidence 334444444444444 4788788888877666 888999999998873 10 49999999999999864 88899999
Q ss_pred HHHH----hcC---CCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHH--HHHHHHHHHHHc--CCHHHHHHHH
Q 019340 144 GLMY----WEM---DKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAE--EAVKLLYQASIA--GHVRAQYQLA 210 (342)
Q Consensus 144 g~~~----~~~---~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~--~A~~~~~~a~~~--~~~~a~~~lg 210 (342)
+.++ ... +++++++.++.++++. .+..++.+.+.++. ..+.++ +++.++.++++. .+..|+++.+
T Consensus 110 ~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~--~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~ 187 (306)
T 3dra_A 110 QLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVD--TFDLHNDAKELSFVDKVIDTDLKNNSAWSHRF 187 (306)
T ss_dssp HHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHH--HTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH--HhcccChHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 9888 666 7899999999999865 78999999999988 566666 999999999885 4889999999
Q ss_pred HHHhcCCC--CCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc-----CCHHHHHHH
Q 019340 211 LCLHRGRG--VDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC-----GHGKAQLEH 281 (342)
Q Consensus 211 ~~~~~g~~--~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~-----~~~~a~~~L 281 (342)
.++..-.. ....++++++++.+++.. ++..+|++++.++..... ..+....+..+.++. .++.++..|
T Consensus 188 ~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~---~~~~~~~~~~~~~~~~~~~~~s~~al~~l 264 (306)
T 3dra_A 188 FLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDR---SITQLEEFSLQFVDLEKDQVTSSFALETL 264 (306)
T ss_dssp HHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTC---CGGGGHHHHHTTEEGGGTEESCHHHHHHH
T ss_pred HHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCC---ChHHHHHHHHHHHhccCCCCCCHHHHHHH
Confidence 98875210 011288999999999876 689999999999965432 455566677776654 478899999
Q ss_pred HHHhhhcCCHHHHHHHHHHHHH-cCcHHHHH
Q 019340 282 GLGLFTEGEMMKAVVYLELATR-AGETAADH 311 (342)
Q Consensus 282 g~~~~~~~~~~~A~~~~~~a~~-~~~~~a~~ 311 (342)
+.+|...|+.++|+.+|+++++ .++....+
T Consensus 265 a~~~~~~~~~~~A~~~~~~l~~~~Dpir~~y 295 (306)
T 3dra_A 265 AKIYTQQKKYNESRTVYDLLKSKYNPIRSNF 295 (306)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCGGGHHH
T ss_pred HHHHHccCCHHHHHHHHHHHHhccChHHHHH
Confidence 9999999999999999999997 68776554
No 108
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.41 E-value=6e-12 Score=105.03 Aligned_cols=127 Identities=20% Similarity=0.195 Sum_probs=98.8
Q ss_pred CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHH
Q 019340 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGI 177 (342)
Q Consensus 100 ~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~ 177 (342)
.+..++.+|.++.. .+++++|+..|+++++ .++.+++++|.+|...|++++|+.+|++++.. +++.+++++|.
T Consensus 5 ~~~~~~~~g~~~~~----~~~~~~A~~~~~~a~~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~ 79 (213)
T 1hh8_A 5 EAISLWNEGVLAAD----KKDWKGALDAFSAVQD-PHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGM 79 (213)
T ss_dssp HHHHHHHHHHHHHH----TTCHHHHHHHHHTSSS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----hCCHHHHHHHHHHHcC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 34566778888887 5788888888888864 36788888888888888888888888888754 67888888888
Q ss_pred HHHcCCccCHHHHHHHHHHHHHcC--C----------------HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCC
Q 019340 178 SYLQAQPANAEEAVKLLYQASIAG--H----------------VRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG 237 (342)
Q Consensus 178 ~~~~g~~~~~~~A~~~~~~a~~~~--~----------------~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~~ 237 (342)
+|. ..+++++|+.+|+++++.. + +.+++++|.+|.. .+++++|+.+|+++++..
T Consensus 80 ~~~--~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 80 LYY--QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAK----KEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHH--HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHTTC
T ss_pred HHH--HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHH----ccCHHHHHHHHHHHHHcC
Confidence 888 7888888888888887732 2 2777778877776 667777777777777654
No 109
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.40 E-value=1.1e-10 Score=111.46 Aligned_cols=215 Identities=9% Similarity=-0.027 Sum_probs=171.0
Q ss_pred hhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCC---CcCCHH-------HHHHHHHHHHh-C--CCHHHHHHHHHHHhc
Q 019340 83 AASLVCKSWNDALRPLREAMVLLRWGKRFKHGRG---VRKNLD-------KALDSFLKGAA-R--GSTLAMVDAGLMYWE 149 (342)
Q Consensus 83 ~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g---~~~~~~-------~A~~~~~~A~~-~--~~~~a~~~lg~~~~~ 149 (342)
++...+.+.+...+. ++.+++.+|.++..... ..++++ +|+..|++|+. . ++..+++.+|.++..
T Consensus 256 ~a~~~y~~al~~~p~--~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~ 333 (530)
T 2ooe_A 256 RVMFAYEQCLLVLGH--HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 333 (530)
T ss_dssp HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 555667777776654 78999999999874000 025665 99999999996 3 578999999999999
Q ss_pred CCCHHHHHHHHHHHHhCC--CH-HHHHHHHHHHHcCCccCHHHHHHHHHHHHHcC--CHHHHHHHHHH-HhcCCCCCCCH
Q 019340 150 MDKKEAAISLYRQAAVLG--DP-AGQFNLGISYLQAQPANAEEAVKLLYQASIAG--HVRAQYQLALC-LHRGRGVDFNL 223 (342)
Q Consensus 150 ~~~~~~A~~~~~~a~~~~--~~-~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~-~~~g~~~~~~~ 223 (342)
.|++++|+..|+++++.. ++ .++..+|.++. ..+++++|+..|+++++.. ....+...+.+ +.. .++.
T Consensus 334 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~--~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~----~~~~ 407 (530)
T 2ooe_A 334 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFAR--RAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYC----SKDK 407 (530)
T ss_dssp TTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHH----TCCH
T ss_pred cCCHHHHHHHHHHHhCccccCchHHHHHHHHHHH--HhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH----cCCh
Confidence 999999999999999873 44 58999999888 7889999999999999853 44555555555 333 5689
Q ss_pred HHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcC--CH----HHHHHHHHHhhhcCCHHHHH
Q 019340 224 QEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCG--HG----KAQLEHGLGLFTEGEMMKAV 295 (342)
Q Consensus 224 ~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~----~a~~~Lg~~~~~~~~~~~A~ 295 (342)
++|..+|+++++. +++..+..++.++.. .| +.++|..+|++++... ++ ..+..........|+.+.+.
T Consensus 408 ~~A~~~~e~al~~~p~~~~~~~~~~~~~~~-~g---~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~ 483 (530)
T 2ooe_A 408 SVAFKIFELGLKKYGDIPEYVLAYIDYLSH-LN---EDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASIL 483 (530)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHTT-TT---CHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHH
T ss_pred hHHHHHHHHHHHHCCCCHHHHHHHHHHHHh-CC---CHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999875 678999999998843 44 9999999999999863 22 35666677677789999999
Q ss_pred HHHHHHHHcCcHHH
Q 019340 296 VYLELATRAGETAA 309 (342)
Q Consensus 296 ~~~~~a~~~~~~~a 309 (342)
.+++++++.-+.++
T Consensus 484 ~~~~r~~~~~p~~~ 497 (530)
T 2ooe_A 484 KVEKRRFTAFREEY 497 (530)
T ss_dssp HHHHHHHHHTHHHH
T ss_pred HHHHHHHHHCchhc
Confidence 99999998877554
No 110
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.40 E-value=9e-12 Score=103.92 Aligned_cols=144 Identities=15% Similarity=0.048 Sum_probs=94.4
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhc
Q 019340 138 LAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLALCLHR 215 (342)
Q Consensus 138 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~ 215 (342)
..++.+|.++...|++++|+.+|+++++. ++.+++++|.+|. ..+++++|+.+|+++++. .++.+++++|.+|..
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~lg~~~~--~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQDP-HSRICFNIGCMYT--ILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSSSC-CHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHcCC-ChHHHHHHHHHHH--HcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 45677888888888888888888887643 6778888888887 777888888888887763 467777777777776
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHhhhcCCHHHHH
Q 019340 216 GRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHGLGLFTEGEMMKAV 295 (342)
Q Consensus 216 g~~~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~~~~~~~A~ 295 (342)
.+++++|+.+|+++++......... .+..|.. .......+++++|.+|...|++++|.
T Consensus 84 ----~~~~~~A~~~~~~al~~~~~~~~~~---~~~~~~~---------------~~~~~~~~~~~l~~~~~~~g~~~~A~ 141 (213)
T 1hh8_A 84 ----TEKYDLAIKDLKEALIQLRGNQLID---YKILGLQ---------------FKLFACEVLYNIAFMYAKKEEWKKAE 141 (213)
T ss_dssp ----TTCHHHHHHHHHHHHHTTTTCSEEE---CGGGTBC---------------CEEEHHHHHHHHHHHHHHTTCHHHHH
T ss_pred ----cccHHHHHHHHHHHHHhCCCccHHH---HHHhccc---------------cCccchHHHHHHHHHHHHccCHHHHH
Confidence 5567777777777766421100000 0000000 00012466777777777777777777
Q ss_pred HHHHHHHHcCc
Q 019340 296 VYLELATRAGE 306 (342)
Q Consensus 296 ~~~~~a~~~~~ 306 (342)
.+|+++++..+
T Consensus 142 ~~~~~al~~~p 152 (213)
T 1hh8_A 142 EQLALATSMKS 152 (213)
T ss_dssp HHHHHHHTTCC
T ss_pred HHHHHHHHcCc
Confidence 77777777655
No 111
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.40 E-value=3.5e-11 Score=106.04 Aligned_cols=152 Identities=11% Similarity=0.023 Sum_probs=100.9
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHhC--CCHH------HHHHHHHHHHcCCccCHHHHHHHHHHHHHc----CC----HHHH
Q 019340 143 AGLMYWEMDKKEAAISLYRQAAVL--GDPA------GQFNLGISYLQAQPANAEEAVKLLYQASIA----GH----VRAQ 206 (342)
Q Consensus 143 lg~~~~~~~~~~~A~~~~~~a~~~--~~~~------a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~----~~----~~a~ 206 (342)
.+..+...+++++|+.+|+++.+. .++. .+..+|.++. ..+++++|+.+|+++++. .+ ..++
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVL--KKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHT--TSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence 344555566666666666666653 2222 2223555555 556667777777766652 11 3356
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHHHHC-----C----CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc----C
Q 019340 207 YQLALCLHRGRGVDFNLQEAARWYLRAAEG-----G----YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC----G 273 (342)
Q Consensus 207 ~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~-----~----~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~ 273 (342)
.++|.+|.. .+++++|+.+|++|++. + ...+++++|.+|.. .+++++|+.+++++++. +
T Consensus 159 ~~lg~~y~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~----~~~y~~A~~~~~~al~~~~~~~ 230 (293)
T 3u3w_A 159 NAIANIYAE----NGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYL----DSRYEESLYQVNKAIEISCRIN 230 (293)
T ss_dssp HHHHHHHHH----TTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHH----cCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHHHcC
Confidence 677777765 55677777777777631 1 24577888888865 23888899888888763 1
Q ss_pred ----CHHHHHHHHHHhhhcC-CHHHHHHHHHHHHHc
Q 019340 274 ----HGKAQLEHGLGLFTEG-EMMKAVVYLELATRA 304 (342)
Q Consensus 274 ----~~~a~~~Lg~~~~~~~-~~~~A~~~~~~a~~~ 304 (342)
-+.+++++|.+|...| ++++|..+|++|+.+
T Consensus 231 ~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 231 SMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp BCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 1678899999999999 579999999999865
No 112
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.38 E-value=8.3e-12 Score=99.12 Aligned_cols=96 Identities=15% Similarity=0.070 Sum_probs=89.6
Q ss_pred CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHH
Q 019340 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNL 175 (342)
Q Consensus 100 ~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~L 175 (342)
++.+++.+|.++.. .+++++|+.+|++++.. +++.+++++|.+|...|++++|+.+|++++.. +++.+++++
T Consensus 35 ~~~~~~~lg~~~~~----~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~l 110 (151)
T 3gyz_A 35 MMDDIYSYAYDFYN----KGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHT 110 (151)
T ss_dssp HHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHH
Confidence 56899999999998 69999999999999986 58999999999999999999999999999754 889999999
Q ss_pred HHHHHcCCccCHHHHHHHHHHHHHcC
Q 019340 176 GISYLQAQPANAEEAVKLLYQASIAG 201 (342)
Q Consensus 176 g~~~~~g~~~~~~~A~~~~~~a~~~~ 201 (342)
|.+|. ..|++++|+.+|+++++..
T Consensus 111 g~~~~--~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 111 GQCQL--RLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHH--HTTCHHHHHHHHHHHHHHC
T ss_pred HHHHH--HcCCHHHHHHHHHHHHHhC
Confidence 99999 9999999999999999865
No 113
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.38 E-value=1.9e-11 Score=107.85 Aligned_cols=145 Identities=14% Similarity=0.046 Sum_probs=102.1
Q ss_pred cCCHHHHHHHHHHHHhCC--CHH------HHHHHHHHHhcCCCHHHHHHHHHHHHhC----CC----HHHHHHHHHHHHc
Q 019340 118 RKNLDKALDSFLKGAARG--STL------AMVDAGLMYWEMDKKEAAISLYRQAAVL----GD----PAGQFNLGISYLQ 181 (342)
Q Consensus 118 ~~~~~~A~~~~~~A~~~~--~~~------a~~~lg~~~~~~~~~~~A~~~~~~a~~~----~~----~~a~~~Lg~~~~~ 181 (342)
.+++++|+.+|+++.+.. ++. .+..+|.++...+++++|+.+|+++++. ++ ..++.+||.+|.
T Consensus 88 ~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~- 166 (293)
T 3u3w_A 88 QKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYA- 166 (293)
T ss_dssp TTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHH-
T ss_pred HhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHH-
Confidence 368888888888887742 222 3345788887777888888888888763 22 346778888887
Q ss_pred CCccCHHHHHHHHHHHHHc-----C----CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC----C----CHHHHHH
Q 019340 182 AQPANAEEAVKLLYQASIA-----G----HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG----G----YVRAMYN 244 (342)
Q Consensus 182 g~~~~~~~A~~~~~~a~~~-----~----~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~----~----~~~a~~~ 244 (342)
..+++++|+.+|+++++. + ...+++++|.+|.. .+++++|+.++++|++. + .+.++++
T Consensus 167 -~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~----~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 167 -ENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYL----DSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp -HTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred -HcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 777888888888887741 1 24567788888877 67888888888888753 1 2677888
Q ss_pred HHHHHHcCCCCcccHHHHHHHHHHHHH
Q 019340 245 TSLCYSFGEGLPLSHRQARKWMKRAAD 271 (342)
Q Consensus 245 lg~~y~~g~g~~~~~~~A~~~~~~a~~ 271 (342)
+|.+|..-. +++++|+.+|++|+.
T Consensus 242 lg~~~~~~g---~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 242 RGECLRKLE---YEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHTT---CCHHHHHHHHHHHHH
T ss_pred HHHHHHHhC---CcHHHHHHHHHHHHH
Confidence 888886421 146888888888875
No 114
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.37 E-value=3.2e-11 Score=91.90 Aligned_cols=123 Identities=23% Similarity=0.357 Sum_probs=77.8
Q ss_pred HHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHH
Q 019340 103 VLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGIS 178 (342)
Q Consensus 103 a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~ 178 (342)
+++.+|.+|.. .+++++|+.+|++++.. .+..+++.+|.++...|++++|+.+|++++.. .++.+++.+|.+
T Consensus 3 ~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 78 (136)
T 2fo7_A 3 AWYNLGNAYYK----QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNA 78 (136)
T ss_dssp HHHHHHHHHHH----HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHH----cCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHH
Confidence 45566666666 36677777777776653 35666666677766667777777777766543 456666666666
Q ss_pred HHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Q 019340 179 YLQAQPANAEEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAE 235 (342)
Q Consensus 179 ~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~ 235 (342)
+. ..+++++|+.+|+++++. .++.+++.+|.++.. .+++++|+.+|+++++
T Consensus 79 ~~--~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 79 YY--KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK----QGDYDEAIEYYQKALE 131 (136)
T ss_dssp HH--TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT----TTCHHHHHHHHHHHHH
T ss_pred HH--HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----HccHHHHHHHHHHHHc
Confidence 66 666666776666666553 355666666666655 4566666666666554
No 115
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.35 E-value=7.5e-14 Score=126.05 Aligned_cols=143 Identities=10% Similarity=-0.006 Sum_probs=84.7
Q ss_pred CCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--CC---------------HHHHHHHHH
Q 019340 151 DKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA--GH---------------VRAQYQLAL 211 (342)
Q Consensus 151 ~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~---------------~~a~~~lg~ 211 (342)
+++++|+..|+++++. .++.+++++|.+++ ..+++++|+.+|+++++. .+ ..+++++|.
T Consensus 127 ~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~--~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 204 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEKLEQSTIVKERGTVYF--KEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAM 204 (336)
T ss_dssp EEEECCCCGGGCCHHHHHHHHHHHHHHHHHHH--HHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHHHHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHH
Confidence 3344444444443322 33444555555555 444555555555554442 22 466666777
Q ss_pred HHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhh
Q 019340 212 CLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFT 287 (342)
Q Consensus 212 ~~~~g~~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~ 287 (342)
||.. .+++++|+.+|+++++. .++.+++++|.+|.. .| ++++|+.+|+++++. ++..++.+||.++..
T Consensus 205 ~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-~g---~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~ 276 (336)
T 1p5q_A 205 CHLK----LQAFSAAIESCNKALELDSNNEKGLSRRGEAHLA-VN---DFELARADFQKVLQLYPNNKAAKTQLAVCQQR 276 (336)
T ss_dssp HHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred HHHH----cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-CC---CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 7665 55677777777776664 466677777777744 22 777777777777665 456777777777777
Q ss_pred cCCHHHH-HHHHHHHHH
Q 019340 288 EGEMMKA-VVYLELATR 303 (342)
Q Consensus 288 ~~~~~~A-~~~~~~a~~ 303 (342)
.|++++| ...|++.+.
T Consensus 277 ~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 277 IRRQLAREKKLYANMFE 293 (336)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 7777777 445555543
No 116
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.35 E-value=2.4e-11 Score=107.12 Aligned_cols=158 Identities=12% Similarity=0.003 Sum_probs=128.6
Q ss_pred HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC--C------HHHHHHHHHHHhcCCCHHHHHHHHHHHHhC----CC
Q 019340 101 AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--S------TLAMVDAGLMYWEMDKKEAAISLYRQAAVL----GD 168 (342)
Q Consensus 101 a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~------~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----~~ 168 (342)
...+...+..+.. .+++++|+.+|.++++.. . ...++.+|.++...|++++|+.+|+++++. .+
T Consensus 75 ~~~l~~~~~~~~~----~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 150 (293)
T 2qfc_A 75 KKQFKDQVIMLCK----QKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGID 150 (293)
T ss_dssp HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSC
T ss_pred HHHHHHHHHHHHH----hhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCc
Confidence 4555566777766 589999999999999853 2 244678999999999999999999999854 11
Q ss_pred ----HHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc-----CC----HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Q 019340 169 ----PAGQFNLGISYLQAQPANAEEAVKLLYQASIA-----GH----VRAQYQLALCLHRGRGVDFNLQEAARWYLRAAE 235 (342)
Q Consensus 169 ----~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~-----~~----~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~ 235 (342)
..+++++|.+|. ..+++++|+.+|+++++. ++ ..+++++|.+|.. .+++++|+.+|+++++
T Consensus 151 ~~~~~~~~~~lg~~y~--~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~----~~~y~~Al~~~~kal~ 224 (293)
T 2qfc_A 151 VYQNLYIENAIANIYA--ENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYL----DSRYEESLYQVNKAIE 224 (293)
T ss_dssp TTHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHH----HhhHHHHHHHHHHHHH
Confidence 568999999999 899999999999999842 22 2689999999998 7899999999999986
Q ss_pred CC--------CHHHHHHHHHHHHcCCCCcccHHHH-HHHHHHHHHc
Q 019340 236 GG--------YVRAMYNTSLCYSFGEGLPLSHRQA-RKWMKRAADC 272 (342)
Q Consensus 236 ~~--------~~~a~~~lg~~y~~g~g~~~~~~~A-~~~~~~a~~~ 272 (342)
.. ...+++++|.+|.. .| ++++| ..+|++|+..
T Consensus 225 ~~~~~~~~~~~~~~~~~lg~~y~~-~g---~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 225 ISCRINSMALIGQLYYQRGECLRK-LE---YEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHTTBCSSHHHHHHHHHHHHHH-TT---CCHHHHHHHHHHHHHH
T ss_pred HHHhcCcHHHHHHHHHHHHHHHHH-cC---CcHHHHHHHHHHHHHH
Confidence 42 26789999999965 33 89999 8889999764
No 117
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.35 E-value=7.6e-11 Score=89.73 Aligned_cols=128 Identities=22% Similarity=0.337 Sum_probs=73.2
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC
Q 019340 139 AMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRG 216 (342)
Q Consensus 139 a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g 216 (342)
+++.+|.++...|++++|+.+|+++++. .++.+++.+|.++. ..+++++|+.+|++++...
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~--~~~~~~~A~~~~~~~~~~~--------------- 65 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYY--KQGDYDEAIEYYQKALELD--------------- 65 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH--HHTCHHHHHHHHHHHHHHC---------------
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHH--HhcCHHHHHHHHHHHHHHC---------------
Confidence 4555666666666666666666665532 44555555555555 4555555555555554421
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhhcCCHHHH
Q 019340 217 RGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKA 294 (342)
Q Consensus 217 ~~~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A 294 (342)
..+..+++.+|.++.. .| ++++|+.++++++.. .+..+++.+|.++...|++++|
T Consensus 66 -------------------~~~~~~~~~l~~~~~~-~~---~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 122 (136)
T 2fo7_A 66 -------------------PRSAEAWYNLGNAYYK-QG---DYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEA 122 (136)
T ss_dssp -------------------TTCHHHHHHHHHHHHT-TT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHH
T ss_pred -------------------CCchHHHHHHHHHHHH-hc---CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHH
Confidence 1234445555555532 22 566666666666554 3456667777777777777777
Q ss_pred HHHHHHHHHcCc
Q 019340 295 VVYLELATRAGE 306 (342)
Q Consensus 295 ~~~~~~a~~~~~ 306 (342)
..+|+++++.++
T Consensus 123 ~~~~~~~~~~~~ 134 (136)
T 2fo7_A 123 IEYYQKALELDP 134 (136)
T ss_dssp HHHHHHHHHHST
T ss_pred HHHHHHHHccCC
Confidence 777777766543
No 118
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.33 E-value=7.5e-12 Score=109.94 Aligned_cols=95 Identities=23% Similarity=0.251 Sum_probs=66.8
Q ss_pred CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHH
Q 019340 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNL 175 (342)
Q Consensus 100 ~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~L 175 (342)
++.+++.+|..+.. .+++++|+.+|++++.. +++.+++++|.+|...|++++|+..|+++++. +++.+++++
T Consensus 3 ~a~~~~~~g~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 78 (281)
T 2c2l_A 3 SAQELKEQGNRLFV----GRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 78 (281)
T ss_dssp CHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 56667777777776 46777777777777664 36677777777777777777777777777654 566777777
Q ss_pred HHHHHcCCccCHHHHHHHHHHHHHc
Q 019340 176 GISYLQAQPANAEEAVKLLYQASIA 200 (342)
Q Consensus 176 g~~~~~g~~~~~~~A~~~~~~a~~~ 200 (342)
|.+|. ..+++++|+.+|+++++.
T Consensus 79 g~~~~--~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 79 GQCQL--EMESYDEAIANLQRAYSL 101 (281)
T ss_dssp HHHHH--HTTCHHHHHHHHHHHHHH
T ss_pred HHHHH--HcCCHHHHHHHHHHHHHh
Confidence 77777 666777777777776653
No 119
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.33 E-value=1.1e-12 Score=120.50 Aligned_cols=205 Identities=10% Similarity=-0.017 Sum_probs=96.6
Q ss_pred CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC-CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 019340 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR-GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQFNLGIS 178 (342)
Q Consensus 100 ~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~-~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~ 178 (342)
++.++..++..+.. .+++++|+.+++.+.+. .++.....|+.+|.+.|+++++..+++. .+..++.++|..
T Consensus 60 D~~~y~~V~~~ae~----~g~~EeAi~yl~~ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~----pn~~a~~~IGd~ 131 (449)
T 1b89_A 60 DPSSYMEVVQAANT----SGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFING----PNNAHIQQVGDR 131 (449)
T ss_dssp -----------------------------------------------------CHHHHTTTTTC----C-----------
T ss_pred CHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHhCCHHHHHHHHcC----CcHHHHHHHHHH
Confidence 33444444444444 34555555555544442 2333444555555555555555544432 334466777777
Q ss_pred HHcCCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCccc
Q 019340 179 YLQAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLS 258 (342)
Q Consensus 179 ~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~y~~g~g~~~~ 258 (342)
+. ..|++++|+.+|.++ ..+..||.|+.. .+++++|++.|++| +++..|-.+..++... ++
T Consensus 132 ~~--~~g~yeeA~~~Y~~a------~n~~~LA~~L~~----Lg~yq~AVea~~KA---~~~~~Wk~v~~aCv~~----~e 192 (449)
T 1b89_A 132 CY--DEKMYDAAKLLYNNV------SNFGRLASTLVH----LGEYQAAVDGARKA---NSTRTWKEVCFACVDG----KE 192 (449)
T ss_dssp -------CTTTHHHHHHHT------TCHHHHHHHHHT----TTCHHHHHHHHHHH---TCHHHHHHHHHHHHHT----TC
T ss_pred HH--HcCCHHHHHHHHHHh------hhHHHHHHHHHH----hccHHHHHHHHHHc---CCchhHHHHHHHHHHc----Cc
Confidence 76 677777777777765 456677777766 66777777777777 4677777766666542 27
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHc--CcHHHHHHHHHHHhhcChhcHHHHHHHHH
Q 019340 259 HRQARKWMKRAADCGHGKAQLEHGLGLFTEGEMMKAVVYLELATRA--GETAADHVKNVILQQLSATSRDRAMLVVD 333 (342)
Q Consensus 259 ~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~~~~~~~~~~~~~~~~a~~~~~ 333 (342)
+++|..+....+ -+++-...+...|...|.+++|+.+++.++.. .+....+-++.+...-..+...+..+++.
T Consensus 193 f~lA~~~~l~L~--~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~ 267 (449)
T 1b89_A 193 FRLAQMCGLHIV--VHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFW 267 (449)
T ss_dssp HHHHHHTTTTTT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHH--hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 777766555422 45555666778888889999999999998766 46777788888888777777777766543
No 120
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.32 E-value=1.3e-11 Score=108.47 Aligned_cols=187 Identities=12% Similarity=0.008 Sum_probs=137.4
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHH
Q 019340 136 STLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLAL 211 (342)
Q Consensus 136 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~ 211 (342)
++.+++.+|.++...|++++|+.+|++++.. .++.+++++|.+|. ..+++++|+.+|+++++. +++.+++++|.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~--~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYL--KMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH--HTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH--HhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 5678999999999999999999999999864 78999999999999 899999999999999874 68999999999
Q ss_pred HHhcCCCCCCCHHHHHHHHHHHHHCCCHH--HHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhh
Q 019340 212 CLHRGRGVDFNLQEAARWYLRAAEGGYVR--AMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFT 287 (342)
Q Consensus 212 ~~~~g~~~~~~~~~A~~~~~~A~~~~~~~--a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~ 287 (342)
+|.. .+++++|+.+|+++++..... .+........ ...++..|....... .+......++.++
T Consensus 81 ~~~~----~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~-- 147 (281)
T 2c2l_A 81 CQLE----MESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL-------RIAKKKRWNSIEERRIHQESELHSYLTRLI-- 147 (281)
T ss_dssp HHHH----TTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH-------HHHHHHHHHHHHHTCCCCCCHHHHHHHHHH--
T ss_pred HHHH----cCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH-------HHHHHHHHHHHHHHHHhhhHHHHHHHHHHH--
Confidence 9998 779999999999998753111 1111111111 333444454444333 4555566666654
Q ss_pred cCCHHHHHHHHHHHHHcCcHHHHHHHHHHHhhc-ChhcHHHHHHHHHhhhc
Q 019340 288 EGEMMKAVVYLELATRAGETAADHVKNVILQQL-SATSRDRAMLVVDSWRA 337 (342)
Q Consensus 288 ~~~~~~A~~~~~~a~~~~~~~a~~~~~~~~~~~-~~~~~~~a~~~~~~~~~ 337 (342)
.|++++|+..|+++++..+.+......+..... ..+..+++.+++.+...
T Consensus 148 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 148 AAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 699999999999999987766544333332222 23556677777766544
No 121
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.31 E-value=2.7e-11 Score=93.10 Aligned_cols=101 Identities=14% Similarity=0.150 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCC--C-------H
Q 019340 101 AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLG--D-------P 169 (342)
Q Consensus 101 a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~--~-------~ 169 (342)
+.++..||..+.. .+++++|+.+|++|++. .++.+++++|.+|...|++++|+..|+++++.+ + .
T Consensus 8 A~a~~~lG~~~~~----~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a 83 (127)
T 4gcn_A 8 AIAEKDLGNAAYK----QKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIA 83 (127)
T ss_dssp HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHH
Confidence 4556667777766 46777777777777664 366677777777777777777777777776431 1 2
Q ss_pred HHHHHHHHHHHcCCccCHHHHHHHHHHHHHc-CCHHHHH
Q 019340 170 AGQFNLGISYLQAQPANAEEAVKLLYQASIA-GHVRAQY 207 (342)
Q Consensus 170 ~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~-~~~~a~~ 207 (342)
.+++++|.++. ..+++++|+.+|++++.. .+++...
T Consensus 84 ~~~~~lg~~~~--~~~~~~~A~~~~~kal~~~~~~~~~~ 120 (127)
T 4gcn_A 84 KAMSRAGNAFQ--KQNDLSLAVQWFHRSLSEFRDPELVK 120 (127)
T ss_dssp HHHHHHHHHHH--HTTCHHHHHHHHHHHHHHSCCHHHHH
T ss_pred HHHHHHHHHHH--HcCCHHHHHHHHHHHHhhCcCHHHHH
Confidence 45666666666 666666666666666653 2444433
No 122
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.31 E-value=1e-11 Score=98.27 Aligned_cols=104 Identities=16% Similarity=0.117 Sum_probs=74.1
Q ss_pred HHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHH--c
Q 019340 127 SFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASI--A 200 (342)
Q Consensus 127 ~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~--~ 200 (342)
.|++++..+ +..+++.+|.++...|++++|+..|++++.. .++.+++++|.+|. ..+++++|+.+|++++. +
T Consensus 9 ~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~--~~g~~~~A~~~~~~al~l~p 86 (148)
T 2vgx_A 9 TIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQ--AMGQYDLAIHSYSYGAVMDI 86 (148)
T ss_dssp SHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHST
T ss_pred hHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHH--HHhhHHHHHHHHHHHHhcCC
Confidence 456666553 5566777777777777777777777777643 66777777777777 67777777777777765 3
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC
Q 019340 201 GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG 236 (342)
Q Consensus 201 ~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~ 236 (342)
+++.+++++|.+|.. .+++++|+.+|+++++.
T Consensus 87 ~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 87 XEPRFPFHAAECLLQ----XGELAEAESGLFLAQEL 118 (148)
T ss_dssp TCTHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHH----cCCHHHHHHHHHHHHHH
Confidence 567777777777776 66777777777777654
No 123
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.30 E-value=9.4e-11 Score=96.62 Aligned_cols=148 Identities=13% Similarity=-0.008 Sum_probs=84.1
Q ss_pred CCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--------CCHHHHHHHHHHHHcCCccCHH
Q 019340 119 KNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--------GDPAGQFNLGISYLQAQPANAE 188 (342)
Q Consensus 119 ~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--------~~~~a~~~Lg~~~~~g~~~~~~ 188 (342)
+++++|...++..... ..+.++..+|.++...|++++|+.+|+++++. ....++.++|.+|. ..++++
T Consensus 6 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~ 83 (203)
T 3gw4_A 6 HDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVER--MAGNWD 83 (203)
T ss_dssp -CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH--HTTCHH
T ss_pred ccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH--HcCCHH
Confidence 4566666633332221 23455556666666666666666666665541 12344555555555 455555
Q ss_pred HHHHHHHHHHHc----C-CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCcccHHHHH
Q 019340 189 EAVKLLYQASIA----G-HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQAR 263 (342)
Q Consensus 189 ~A~~~~~~a~~~----~-~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~ 263 (342)
+|+.+|+++++. + ++. ....+++++|.+|.. .+++++|+
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~--------------------------------~~~~~~~~lg~~~~~----~g~~~~A~ 127 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPL--------------------------------AASANAYEVATVALH----FGDLAGAR 127 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHH--------------------------------HHHHHHHHHHHHHHH----HTCHHHHH
T ss_pred HHHHHHHHHHHHHHHcCccHH--------------------------------HHHHHHHHHHHHHHH----hCCHHHHH
Confidence 555555554432 1 100 012345666666643 22677777
Q ss_pred HHHHHHHHc----CC----HHHHHHHHHHhhhcCCHHHHHHHHHHHHHc
Q 019340 264 KWMKRAADC----GH----GKAQLEHGLGLFTEGEMMKAVVYLELATRA 304 (342)
Q Consensus 264 ~~~~~a~~~----~~----~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~ 304 (342)
.+++++++. ++ ..++.++|.++...|++++|..+++++++.
T Consensus 128 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 128 QEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 777776542 33 234688999999999999999999998865
No 124
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.30 E-value=4.5e-11 Score=91.83 Aligned_cols=94 Identities=20% Similarity=0.244 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHcC--C-------HHH
Q 019340 137 TLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIAG--H-------VRA 205 (342)
Q Consensus 137 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~~--~-------~~a 205 (342)
+.++.+||..+...|++++|+.+|++|++. .++.+++++|.+|. ..+++++|+.+|+++++.. + ..+
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~--~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~ 85 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYF--EEKKFAECVQFCEKAVEVGRETRADYKLIAKA 85 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHH--HhhhHHHHHHHHHHHHHhCcccchhhHHHHHH
Confidence 456778999999999999999999998764 77889999999999 8889999999999987642 1 346
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC
Q 019340 206 QYQLALCLHRGRGVDFNLQEAARWYLRAAEG 236 (342)
Q Consensus 206 ~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~ 236 (342)
++++|.++.. .+++++|+.+|++++..
T Consensus 86 ~~~lg~~~~~----~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 86 MSRAGNAFQK----QNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH----cCCHHHHHHHHHHHHhh
Confidence 7777777776 66777777777777654
No 125
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.29 E-value=1.1e-10 Score=92.94 Aligned_cols=124 Identities=12% Similarity=0.082 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHH
Q 019340 101 AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLG 176 (342)
Q Consensus 101 a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg 176 (342)
+..++.+|.++.. .+++++|+.+|++++.. .++.+++.+|.++...|++++|+.+|+++++. .++.+++++|
T Consensus 13 ~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a 88 (166)
T 1a17_A 13 AEELKTQANDYFK----AKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRA 88 (166)
T ss_dssp HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 4566777777777 47888888888887775 36777788888888888888888888887754 5677788888
Q ss_pred HHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHH--HhcCCCCCCCHHHHHHHHHHHH
Q 019340 177 ISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLALC--LHRGRGVDFNLQEAARWYLRAA 234 (342)
Q Consensus 177 ~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~--~~~g~~~~~~~~~A~~~~~~A~ 234 (342)
.++. ..+++++|+.+|+++++. .++.++..++.+ +.. .+++++|+.++.++.
T Consensus 89 ~~~~--~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 89 ASNM--ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVK----QKAFERAIAGDEHKR 144 (166)
T ss_dssp HHHH--HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
T ss_pred HHHH--HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH----HHHHHHHHHcccchH
Confidence 8877 777888888888877664 456666444444 433 445666666666543
No 126
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.29 E-value=1.1e-11 Score=113.90 Aligned_cols=225 Identities=11% Similarity=0.029 Sum_probs=91.7
Q ss_pred CChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCHHHH
Q 019340 77 TLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAA 156 (342)
Q Consensus 77 ~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~~~~~A 156 (342)
..+++.+|. .+.+.. +++..++.||..+.. .+++++|++.|.++ +++.++..++..+...|++++|
T Consensus 15 ~~~~ld~A~----~fae~~---~~~~vWs~La~A~l~----~g~~~eAIdsfika---~D~~~y~~V~~~ae~~g~~EeA 80 (449)
T 1b89_A 15 HIGNLDRAY----EFAERC---NEPAVWSQLAKAQLQ----KGMVKEAIDSYIKA---DDPSSYMEVVQAANTSGNWEEL 80 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHH----HHHHhC---CChHHHHHHHHHHHH----cCCHHHHHHHHHcC---CCHHHHHHHHHHHHhCCCHHHH
Confidence 335566774 333333 355688899999999 48999999999874 6778899999999999999999
Q ss_pred HHHHHHHHhC-CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Q 019340 157 ISLYRQAAVL-GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAE 235 (342)
Q Consensus 157 ~~~~~~a~~~-~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~ 235 (342)
+.+++.+.+. .++.....|+.+|. ..++..++..+++. .+..++..+|.+|.. .+.+++|+.+|.++
T Consensus 81 i~yl~~ark~~~~~~i~~~Li~~Y~--Klg~l~e~e~f~~~----pn~~a~~~IGd~~~~----~g~yeeA~~~Y~~a-- 148 (449)
T 1b89_A 81 VKYLQMARKKARESYVETELIFALA--KTNRLAELEEFING----PNNAHIQQVGDRCYD----EKMYDAAKLLYNNV-- 148 (449)
T ss_dssp ------------------------------CHHHHTTTTTC----C--------------------CTTTHHHHHHHT--
T ss_pred HHHHHHHHHhCccchhHHHHHHHHH--HhCCHHHHHHHHcC----CcHHHHHHHHHHHHH----cCCHHHHHHHHHHh--
Confidence 9999988865 45666777888888 78899998888853 445699999999987 77899999999986
Q ss_pred CCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCcHHHHHHHHH
Q 019340 236 GGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNV 315 (342)
Q Consensus 236 ~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~~~~ 315 (342)
..+..|+.++.+ .| ++++|++.++++ +++..+..++.++...|+++.|..+... +...+.+.. .+
T Consensus 149 ----~n~~~LA~~L~~-Lg---~yq~AVea~~KA---~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~~ad~l~---~l 213 (449)
T 1b89_A 149 ----SNFGRLASTLVH-LG---EYQAAVDGARKA---NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVHADELE---EL 213 (449)
T ss_dssp ----TCHHHHHHHHHT-TT---CHHHHHHHHHHH---TCHHHHHHHHHHHHHTTCHHHHHHTTTT-TTTCHHHHH---HH
T ss_pred ----hhHHHHHHHHHH-hc---cHHHHHHHHHHc---CCchhHHHHHHHHHHcCcHHHHHHHHHH-HHhCHhhHH---HH
Confidence 578889999965 33 999999999999 5899999999999999999999777775 333444433 34
Q ss_pred HHhhcChhcHHHHHHHHHhhhcCCCCC
Q 019340 316 ILQQLSATSRDRAMLVVDSWRAMPSLH 342 (342)
Q Consensus 316 ~~~~~~~~~~~~a~~~~~~~~~~~~~~ 342 (342)
+..+...+..+++..+++.-+...+.|
T Consensus 214 v~~Yek~G~~eEai~lLe~aL~le~ah 240 (449)
T 1b89_A 214 INYYQDRGYFEELITMLEAALGLERAH 240 (449)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTSTTCC
T ss_pred HHHHHHCCCHHHHHHHHHHHhCCcHHH
Confidence 445566689999999999888877655
No 127
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.27 E-value=7.5e-11 Score=97.21 Aligned_cols=148 Identities=18% Similarity=0.175 Sum_probs=112.3
Q ss_pred CCChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC----C----CHHHHHHHHHHH
Q 019340 76 FTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR----G----STLAMVDAGLMY 147 (342)
Q Consensus 76 ~~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~----~----~~~a~~~lg~~~ 147 (342)
+..|++.+|...+..... .....+.+++.+|.+|.. .+++++|+.+|+++++. + ...++.++|.+|
T Consensus 3 ~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~ 76 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA--HPATASGARFMLGYVYAF----MDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVE 76 (203)
T ss_dssp ----CHHHHHHHHHHHHT--STTTHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHhcC--ChHHHHHHHHHHHHHHHH----hCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 566788888753333322 222467899999999998 58999999999999883 2 456788999999
Q ss_pred hcCCCHHHHHHHHHHHHhC----C-C----HHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc----CC----HHHHHHHH
Q 019340 148 WEMDKKEAAISLYRQAAVL----G-D----PAGQFNLGISYLQAQPANAEEAVKLLYQASIA----GH----VRAQYQLA 210 (342)
Q Consensus 148 ~~~~~~~~A~~~~~~a~~~----~-~----~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~----~~----~~a~~~lg 210 (342)
...|++++|+.+|+++++. + + ..++.++|.++. ..+++++|+.+++++++. ++ ..++.++|
T Consensus 77 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~--~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 154 (203)
T 3gw4_A 77 RMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVAL--HFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLG 154 (203)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHH--HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHH--HhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHH
Confidence 9999999999999999864 3 3 357889999999 889999999999998752 33 23457778
Q ss_pred HHHhcCCCCCCCHHHHHHHHHHHHH
Q 019340 211 LCLHRGRGVDFNLQEAARWYLRAAE 235 (342)
Q Consensus 211 ~~~~~g~~~~~~~~~A~~~~~~A~~ 235 (342)
.++.. .+++++|+.+++++++
T Consensus 155 ~~~~~----~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 155 DLAQQ----EKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHH----TTCHHHHHHHHHHHHH
T ss_pred HHHHH----CcCHHHHHHHHHHHHH
Confidence 77776 5677888888777765
No 128
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.27 E-value=8.8e-11 Score=89.56 Aligned_cols=108 Identities=10% Similarity=-0.011 Sum_probs=79.8
Q ss_pred CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHH
Q 019340 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNL 175 (342)
Q Consensus 100 ~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~L 175 (342)
.+..++.+|..+.. .+++++|+.+|+++++. +++.+++++|.+|...|++++|+..|+++++. +++.+++++
T Consensus 3 ~a~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 78 (126)
T 3upv_A 3 KAEEARLEGKEYFT----KSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRK 78 (126)
T ss_dssp HHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 35567777877777 47888888888888775 46778888888888888888888888887754 667888888
Q ss_pred HHHHHcCCccCHHHHHHHHHHHHHc--------CCHHHHHHHHHHH
Q 019340 176 GISYLQAQPANAEEAVKLLYQASIA--------GHVRAQYQLALCL 213 (342)
Q Consensus 176 g~~~~~g~~~~~~~A~~~~~~a~~~--------~~~~a~~~lg~~~ 213 (342)
|.++. ..+++++|+.+|+++++. .++.+...++.+.
T Consensus 79 g~~~~--~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 79 ATAQI--AVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp HHHHH--HTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HHHHH--HHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 88888 777888888888877653 3455555555554
No 129
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.26 E-value=3.4e-10 Score=89.97 Aligned_cols=94 Identities=19% Similarity=0.110 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHH
Q 019340 137 TLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLALC 212 (342)
Q Consensus 137 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~ 212 (342)
+..++.+|.++...|++++|+.+|+++++. .++.+++++|.++. ..+++++|+.+|+++++. .++.+++++|.+
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~--~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~ 90 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYL--RTECYGYALGDATRAIELDKKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH--HcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 456677777777777777777777777654 56777777777777 667777777777777663 456666667766
Q ss_pred HhcCCCCCCCHHHHHHHHHHHHHC
Q 019340 213 LHRGRGVDFNLQEAARWYLRAAEG 236 (342)
Q Consensus 213 ~~~g~~~~~~~~~A~~~~~~A~~~ 236 (342)
+.. .+++++|+.+|+++++.
T Consensus 91 ~~~----~~~~~~A~~~~~~a~~~ 110 (166)
T 1a17_A 91 NMA----LGKFRAALRDYETVVKV 110 (166)
T ss_dssp HHH----TTCHHHHHHHHHHHHHH
T ss_pred HHH----hccHHHHHHHHHHHHHh
Confidence 665 45666666666666553
No 130
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.26 E-value=9.7e-11 Score=105.54 Aligned_cols=110 Identities=18% Similarity=0.163 Sum_probs=64.2
Q ss_pred CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC--C---------------HHHHHHHHHHHhcCCCHHHHHHHHHH
Q 019340 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--S---------------TLAMVDAGLMYWEMDKKEAAISLYRQ 162 (342)
Q Consensus 100 ~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~---------------~~a~~~lg~~~~~~~~~~~A~~~~~~ 162 (342)
++.+++.+|.+|.. .+++++|+..|++|+... + ..+++++|.+|...|++++|+.+|++
T Consensus 146 ~a~~~~~~g~~~~~----~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~ 221 (336)
T 1p5q_A 146 QSTIVKERGTVYFK----EGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNK 221 (336)
T ss_dssp HHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34555666666655 456666666666666542 2 35556666666666666666666666
Q ss_pred HHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhc
Q 019340 163 AAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLALCLHR 215 (342)
Q Consensus 163 a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~ 215 (342)
+++. +++.+++++|.+|. ..+++++|+.+|+++++. +++.++.++|.++..
T Consensus 222 al~~~p~~~~a~~~lg~~~~--~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~ 276 (336)
T 1p5q_A 222 ALELDSNNEKGLSRRGEAHL--AVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQR 276 (336)
T ss_dssp HHHHCTTCHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred HHHhCCCcHHHHHHHHHHHH--HCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 5543 45566666666666 555666666666665543 355566666666554
No 131
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.26 E-value=8.9e-11 Score=94.05 Aligned_cols=108 Identities=17% Similarity=0.114 Sum_probs=85.6
Q ss_pred CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHH
Q 019340 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNL 175 (342)
Q Consensus 100 ~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~L 175 (342)
++..++.+|.++.. .+++++|+.+|+++++. +++.+++++|.+|...|++++|+.+|+++++. +++.+++++
T Consensus 10 ~a~~~~~~g~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 85 (164)
T 3sz7_A 10 ESDKLKSEGNAAMA----RKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRL 85 (164)
T ss_dssp HHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 46777888888887 58888888888888875 47888888888888888888888888888754 678888888
Q ss_pred HHHHHcCCccCHHHHHHHHHHHHH--cCCHHHHHHHHHHH
Q 019340 176 GISYLQAQPANAEEAVKLLYQASI--AGHVRAQYQLALCL 213 (342)
Q Consensus 176 g~~~~~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~ 213 (342)
|.+|. ..+++++|+.+|+++++ ++++.+++..+...
T Consensus 86 g~~~~--~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 123 (164)
T 3sz7_A 86 GLARF--DMADYKGAKEAYEKGIEAEGNGGSDAMKRGLET 123 (164)
T ss_dssp HHHHH--HTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred HHHHH--HccCHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 88888 78888888888888765 45666665555443
No 132
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.24 E-value=1.6e-10 Score=88.09 Aligned_cols=95 Identities=17% Similarity=0.026 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHH
Q 019340 137 TLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLALC 212 (342)
Q Consensus 137 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~ 212 (342)
+..++.+|..+...|++++|+.+|+++++. +++.+++++|.+|. ..+++++|+.+|+++++. .++.+++++|.+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~--~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALA--KLMSFPEAIADCNKAIEKDPNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH--HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 467788999999999999999999998864 67899999999998 888999999999998774 578889999999
Q ss_pred HhcCCCCCCCHHHHHHHHHHHHHCC
Q 019340 213 LHRGRGVDFNLQEAARWYLRAAEGG 237 (342)
Q Consensus 213 ~~~g~~~~~~~~~A~~~~~~A~~~~ 237 (342)
|.. .+++++|+.+|+++++..
T Consensus 82 ~~~----~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 82 QIA----VKEYASALETLDAARTKD 102 (126)
T ss_dssp HHH----TTCHHHHHHHHHHHHHHH
T ss_pred HHH----HhCHHHHHHHHHHHHHhC
Confidence 887 678889999988887643
No 133
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.24 E-value=1.8e-10 Score=87.90 Aligned_cols=110 Identities=11% Similarity=0.074 Sum_probs=90.4
Q ss_pred CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHH
Q 019340 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNL 175 (342)
Q Consensus 100 ~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~L 175 (342)
.+.+++.+|.++.. .+++++|+.+|+++++. .+..+++.+|.+|...|++++|+.+|+++++. .++.+++++
T Consensus 15 ~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 90 (133)
T 2lni_A 15 LALMVKNKGNECFQ----KGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRK 90 (133)
T ss_dssp HHHHHHHHHHHHHH----TTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHH
Confidence 56778888888887 58889999999998886 37888888999988889999999999888764 678888888
Q ss_pred HHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhc
Q 019340 176 GISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLALCLHR 215 (342)
Q Consensus 176 g~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~ 215 (342)
|.++. ..+++++|+.+|+++++. .+..++..++.++..
T Consensus 91 a~~~~--~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 130 (133)
T 2lni_A 91 AAALE--AMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMA 130 (133)
T ss_dssp HHHHH--HTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHH
T ss_pred HHHHH--HHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 88888 788888888888888774 467788888887753
No 134
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.24 E-value=6.4e-11 Score=92.63 Aligned_cols=94 Identities=16% Similarity=0.165 Sum_probs=55.7
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHH--cCCHHHHHHHHH
Q 019340 136 STLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASI--AGHVRAQYQLAL 211 (342)
Q Consensus 136 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~ 211 (342)
+..+++.+|.++...|++++|+.+|++++.. .++.+++.+|.+|. ..+++++|+.+|++++. ++++.+++++|.
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~--~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 94 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQ--SLGLYEQALQSYSYGALMDINEPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHCTTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHH--HHhhHHHHHHHHHHHHhcCCCCcHHHHHHHH
Confidence 3445556666666666666666666665533 45666666666666 55666666666666554 345566666666
Q ss_pred HHhcCCCCCCCHHHHHHHHHHHHH
Q 019340 212 CLHRGRGVDFNLQEAARWYLRAAE 235 (342)
Q Consensus 212 ~~~~g~~~~~~~~~A~~~~~~A~~ 235 (342)
+|.. .+++++|+.+|+++++
T Consensus 95 ~~~~----~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 95 CHLQ----LGDLDGAESGFYSARA 114 (142)
T ss_dssp HHHH----TTCHHHHHHHHHHHHH
T ss_pred HHHH----cCCHHHHHHHHHHHHH
Confidence 6655 4556666666666554
No 135
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.23 E-value=1.3e-10 Score=93.04 Aligned_cols=108 Identities=19% Similarity=0.126 Sum_probs=91.5
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHH
Q 019340 136 STLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLAL 211 (342)
Q Consensus 136 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~ 211 (342)
++.+++.+|.++...|++++|+.+|+++++. .++.+++++|.+|. ..+++++|+.+|+++++. .++.+++++|.
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~--~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYS--ASGQHEKAAEDAELATVVDPKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHH--HccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 4677889999999999999999999999865 78999999999999 889999999999998874 58899999999
Q ss_pred HHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHH
Q 019340 212 CLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCY 249 (342)
Q Consensus 212 ~~~~g~~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y 249 (342)
+|.. .+++++|+.+|+++++. ++..+++..+...
T Consensus 88 ~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 123 (164)
T 3sz7_A 88 ARFD----MADYKGAKEAYEKGIEAEGNGGSDAMKRGLET 123 (164)
T ss_dssp HHHH----TTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred HHHH----ccCHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 9987 77899999999999875 4555555555544
No 136
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.23 E-value=2.8e-11 Score=95.63 Aligned_cols=95 Identities=19% Similarity=0.127 Sum_probs=87.8
Q ss_pred CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHH
Q 019340 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNL 175 (342)
Q Consensus 100 ~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~L 175 (342)
++.+++.+|.++.. .+++++|+.+|++++.. +++.+++.+|.+|...|++++|+.+|++++.. +++.+++++
T Consensus 20 ~~~~~~~~g~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l 95 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQ----SGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHA 95 (148)
T ss_dssp HHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHH
T ss_pred hHHHHHHHHHHHHH----cCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHH
Confidence 56789999999998 58999999999999886 58999999999999999999999999999864 789999999
Q ss_pred HHHHHcCCccCHHHHHHHHHHHHHc
Q 019340 176 GISYLQAQPANAEEAVKLLYQASIA 200 (342)
Q Consensus 176 g~~~~~g~~~~~~~A~~~~~~a~~~ 200 (342)
|.+|. ..|++++|+.+|+++++.
T Consensus 96 g~~~~--~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 96 AECLL--QXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHH--HTTCHHHHHHHHHHHHHH
T ss_pred HHHHH--HcCCHHHHHHHHHHHHHH
Confidence 99999 899999999999998774
No 137
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.22 E-value=1.3e-10 Score=101.06 Aligned_cols=188 Identities=11% Similarity=0.091 Sum_probs=150.0
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHH-------HHHHHcCCccCHHHHHHHHHHHHHc--CC-----
Q 019340 139 AMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNL-------GISYLQAQPANAEEAVKLLYQASIA--GH----- 202 (342)
Q Consensus 139 a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~L-------g~~~~~g~~~~~~~A~~~~~~a~~~--~~----- 202 (342)
.++..|.-+ ..+|+..|...|.++++. +.+++|..+ +.++. ......+++..+++++.. +.
T Consensus 9 ~~~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~--~~~r~~~a~~~~~~~l~l~p~~l~a~~ 85 (282)
T 4f3v_A 9 SLFESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLF--RAWYSRRNFGQLSGSVQISMSTLNARI 85 (282)
T ss_dssp HHHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHH--HHHHTGGGTTHHHHTTTCCGGGGCCEE
T ss_pred HHHHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHH--HHHHHHHHHHHHHHHhcCChhhhhhhh
Confidence 455566666 589999999999999865 789999988 67776 556667888888887762 11
Q ss_pred ----------------HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCcccHHHHHH
Q 019340 203 ----------------VRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG--YVRAMYNTSLCYSFGEGLPLSHRQARK 264 (342)
Q Consensus 203 ----------------~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~y~~g~g~~~~~~~A~~ 264 (342)
.+....++.++.. .+++++|.+.|...+..+ +. +++.+|.++.. .+++++|+.
T Consensus 86 ~~~g~y~~~~~~v~~r~dl~LayA~~L~~----~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~----~~r~~dA~~ 156 (282)
T 4f3v_A 86 AIGGLYGDITYPVTSPLAITMGFAACEAA----QGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGA----AERWTDVID 156 (282)
T ss_dssp ECCTTTCCCEEECSSHHHHHHHHHHHHHH----HTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHH----TTCHHHHHH
T ss_pred ccCCcccccccccCCHhHHHHHHHHHHHH----CCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHH----cCCHHHHHH
Confidence 3455567777776 678999999999887664 34 89999999976 449999999
Q ss_pred HHHHHHHcCC----HHHHHHHHHHhhhcCCHHHHHHHHHHHHHcC-----cHHHHHHHHHHHhhcChhcHHHHHHHHHhh
Q 019340 265 WMKRAADCGH----GKAQLEHGLGLFTEGEMMKAVVYLELATRAG-----ETAADHVKNVILQQLSATSRDRAMLVVDSW 335 (342)
Q Consensus 265 ~~~~a~~~~~----~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~-----~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~ 335 (342)
+|+.+....+ ..++++||.++...|++++|+.+|++++... ..++..+++.++..+ ++.++|+.+++++
T Consensus 157 ~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~l--Gr~deA~~~l~~a 234 (282)
T 4f3v_A 157 QVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQ--GNESAAVALLEWL 234 (282)
T ss_dssp HHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHH--TCHHHHHHHHHHH
T ss_pred HHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHc--CCHHHHHHHHHHH
Confidence 9998877643 3478999999999999999999999998654 346777777777665 8899999999999
Q ss_pred hcCCC
Q 019340 336 RAMPS 340 (342)
Q Consensus 336 ~~~~~ 340 (342)
....|
T Consensus 235 ~a~~P 239 (282)
T 4f3v_A 235 QTTHP 239 (282)
T ss_dssp HHHSC
T ss_pred HhcCC
Confidence 87766
No 138
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.20 E-value=3.1e-09 Score=94.05 Aligned_cols=217 Identities=6% Similarity=-0.151 Sum_probs=175.2
Q ss_pred CCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCC--CHHHHHHHHHHHHhC--CCHHHHHHHHHHH----Hc-CCccCH
Q 019340 119 KNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMD--KKEAAISLYRQAAVL--GDPAGQFNLGISY----LQ-AQPANA 187 (342)
Q Consensus 119 ~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~--~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~----~~-g~~~~~ 187 (342)
...++|+..+.+++.. .+..+++..+.++...+ ++++++.++.+++.. .+..++...+.++ .. +..+++
T Consensus 47 e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 47 EYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred CCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCH
Confidence 3456899999999997 48999999999999998 999999999999864 7889999999998 42 112789
Q ss_pred HHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCCCCHH--HHHHHHHHHHHC--CCHHHHHHHHHHHHcCCC--CcccH
Q 019340 188 EEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQ--EAARWYLRAAEG--GYVRAMYNTSLCYSFGEG--LPLSH 259 (342)
Q Consensus 188 ~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~--~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g--~~~~~ 259 (342)
++++.++.++++. .+..+++.-+.++.. .+.++ +++.++.++++. .+..||.+.+.+...-.. ....+
T Consensus 127 ~~EL~~~~~~l~~~pkny~aW~~R~~vl~~----l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 127 YREFDILEAMLSSDPKNHHVWSYRKWLVDT----FDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhH
Confidence 9999999999885 589999999999876 34455 999999999986 588899999999854210 01228
Q ss_pred HHHHHHHHHHHHc--CCHHHHHHHHHHhhhcCCHHH-HHHHHHHHHHcC-----cHHHHHHHHHHHhhcChhcHHHHHHH
Q 019340 260 RQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMK-AVVYLELATRAG-----ETAADHVKNVILQQLSATSRDRAMLV 331 (342)
Q Consensus 260 ~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~-A~~~~~~a~~~~-----~~~a~~~~~~~~~~~~~~~~~~a~~~ 331 (342)
++++.++++++.. ++..+++.++.++...|+..+ ...+..+.++.+ ...+...+..+... .++.++|.++
T Consensus 203 ~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~--~~~~~~A~~~ 280 (306)
T 3dra_A 203 DEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQ--QKKYNESRTV 280 (306)
T ss_dssp HHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHH--TTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHc--cCCHHHHHHH
Confidence 9999999999876 779999999999998887544 556777776654 67788777777764 4788999999
Q ss_pred HHhhhc-CCCC
Q 019340 332 VDSWRA-MPSL 341 (342)
Q Consensus 332 ~~~~~~-~~~~ 341 (342)
++.+.. ..|.
T Consensus 281 ~~~l~~~~Dpi 291 (306)
T 3dra_A 281 YDLLKSKYNPI 291 (306)
T ss_dssp HHHHHHTTCGG
T ss_pred HHHHHhccChH
Confidence 999875 5654
No 139
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.20 E-value=3e-10 Score=86.63 Aligned_cols=109 Identities=16% Similarity=0.080 Sum_probs=85.2
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHH
Q 019340 136 STLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLAL 211 (342)
Q Consensus 136 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~ 211 (342)
++.+++.+|.++...|++++|+.+|+++++. .++.+++++|.++. ..+++++|+.+|+++++. .++.+++++|.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~--~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYT--KLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHT--TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH--HhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 5677888888888888888888888888865 57888888888888 788888888888888764 46788888888
Q ss_pred HHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH
Q 019340 212 CLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYS 250 (342)
Q Consensus 212 ~~~~g~~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~ 250 (342)
+|.. .+++++|+.+|++++.. .+..++..++.++.
T Consensus 93 ~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 129 (133)
T 2lni_A 93 ALEA----MKDYTKAMDVYQKALDLDSSCKEAADGYQRCMM 129 (133)
T ss_dssp HHHH----TTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHH
T ss_pred HHHH----HhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 8876 66778888888877765 35566777776663
No 140
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.20 E-value=1.3e-10 Score=94.09 Aligned_cols=112 Identities=16% Similarity=0.138 Sum_probs=60.8
Q ss_pred CCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHH-HHcCCccCH--HHHH
Q 019340 119 KNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGIS-YLQAQPANA--EEAV 191 (342)
Q Consensus 119 ~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~-~~~g~~~~~--~~A~ 191 (342)
+++++|+..|++++.. .++.+++.+|.+|...|++++|+.+|+++++. .++.+++.+|.+ +. ..+++ ++|+
T Consensus 24 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~--~~~~~~~~~A~ 101 (177)
T 2e2e_A 24 QNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYY--QASQHMTAQTR 101 (177)
T ss_dssp ---CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHH--HTTTCCCHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH--hcCCcchHHHH
Confidence 4555555555555553 25555556666666666666666666665532 455555666655 44 34454 5666
Q ss_pred HHHHHHHHc--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC
Q 019340 192 KLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG 236 (342)
Q Consensus 192 ~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~ 236 (342)
.+|+++++. +++.+++.+|.+|.. .+++++|+.+|+++++.
T Consensus 102 ~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 102 AMIDKALALDSNEITALMLLASDAFM----QANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHH----cccHHHHHHHHHHHHhh
Confidence 666655542 345555566655554 44555555555555554
No 141
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.19 E-value=2.1e-10 Score=89.60 Aligned_cols=101 Identities=17% Similarity=0.118 Sum_probs=89.9
Q ss_pred CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHH
Q 019340 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNL 175 (342)
Q Consensus 100 ~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~L 175 (342)
++.+++.+|.++.. .+++++|+.+|++++.. .++.+++.+|.+|...|++++|+.+|++++.. +++.+++++
T Consensus 17 ~~~~~~~~a~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 92 (142)
T 2xcb_A 17 TLEQLYALGFNQYQ----AGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHA 92 (142)
T ss_dssp HHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHH
T ss_pred HHHHHHHHHHHHHH----HccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHH
Confidence 56788999999998 58999999999999986 48999999999999999999999999999865 789999999
Q ss_pred HHHHHcCCccCHHHHHHHHHHHHHc--CCHHHH
Q 019340 176 GISYLQAQPANAEEAVKLLYQASIA--GHVRAQ 206 (342)
Q Consensus 176 g~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~ 206 (342)
|.+|. ..+++++|+.+|+++++. +++...
T Consensus 93 g~~~~--~~g~~~~A~~~~~~al~~~p~~~~~~ 123 (142)
T 2xcb_A 93 AECHL--QLGDLDGAESGFYSARALAAAQPAHE 123 (142)
T ss_dssp HHHHH--HTTCHHHHHHHHHHHHHHHHTCGGGH
T ss_pred HHHHH--HcCCHHHHHHHHHHHHHhCCCCcchH
Confidence 99999 899999999999998764 454443
No 142
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.18 E-value=3.2e-11 Score=99.79 Aligned_cols=126 Identities=17% Similarity=0.156 Sum_probs=68.6
Q ss_pred cCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCH----------------HHHHHHHH
Q 019340 118 RKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDP----------------AGQFNLGI 177 (342)
Q Consensus 118 ~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~----------------~a~~~Lg~ 177 (342)
.++++++.+.+...... ..+..+..+|.++...|++++|+.+|++++.. .++ .+++++|.
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~ 96 (198)
T 2fbn_A 17 LYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLAT 96 (198)
T ss_dssp -----CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHH
Confidence 45566666555543332 34556667777777777777777777777754 232 55555666
Q ss_pred HHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHH
Q 019340 178 SYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCY 249 (342)
Q Consensus 178 ~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y 249 (342)
+|. ..+++++|+.+|+++++. .++.+++++|.+|.. .+++++|+.+|++++.. .+..++..++.++
T Consensus 97 ~~~--~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 166 (198)
T 2fbn_A 97 CYN--KNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMY----FGFLEEAKENLYKAASLNPNNLDIRNSYELCV 166 (198)
T ss_dssp HHH--HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHH--HhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH----cccHHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence 655 555666666666655542 345555555555554 44555555555555443 3444555555444
No 143
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.17 E-value=5.3e-10 Score=87.89 Aligned_cols=125 Identities=18% Similarity=0.183 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC----CC----HHHHHHHHHHHhcCCCHHHHHHHHHHHHhC----CC
Q 019340 101 AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR----GS----TLAMVDAGLMYWEMDKKEAAISLYRQAAVL----GD 168 (342)
Q Consensus 101 a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~----~~----~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----~~ 168 (342)
+.+++.+|.+|.. .+++++|+.+|+++++. ++ ..++..+|.+|...|++++|+.+|+++++. ++
T Consensus 9 ~~~~~~l~~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 84 (164)
T 3ro3_A 9 GRAFGNLGNTHYL----LGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD 84 (164)
T ss_dssp HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHH----hcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Confidence 4567778888877 47888888888888764 22 246778888888888888888888887753 22
Q ss_pred ----HHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc----C----CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Q 019340 169 ----PAGQFNLGISYLQAQPANAEEAVKLLYQASIA----G----HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAE 235 (342)
Q Consensus 169 ----~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~----~----~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~ 235 (342)
..++.++|.++. ..+++++|+.+++++++. + .+.++..+|.+|.. .+++++|+.+++++++
T Consensus 85 ~~~~~~~~~~l~~~~~--~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 85 RAVEAQSCYSLGNTYT--LLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTA----LGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHH--HHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHH----ccCHHHHHHHHHHHHH
Confidence 456777777777 777888888888877643 1 13455566666655 4556666666666543
No 144
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.17 E-value=1.1e-09 Score=82.84 Aligned_cols=110 Identities=15% Similarity=0.119 Sum_probs=84.6
Q ss_pred CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHH
Q 019340 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNL 175 (342)
Q Consensus 100 ~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~L 175 (342)
++..++.+|.++.. .+++++|+.+|++++.. +++.+++.+|.++...|++++|+.+|+++++. .++.+++.+
T Consensus 11 ~~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 86 (131)
T 2vyi_A 11 EAERLKTEGNEQMK----VENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRM 86 (131)
T ss_dssp HHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred hhHHHHHHHHHHHH----ccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHH
Confidence 45667778888877 47888888888888774 46777888888888888888888888887754 667788888
Q ss_pred HHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhc
Q 019340 176 GISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLALCLHR 215 (342)
Q Consensus 176 g~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~ 215 (342)
|.++. ..+++++|+.+|+++++. +++.++..+|.++..
T Consensus 87 ~~~~~--~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 126 (131)
T 2vyi_A 87 GLALS--SLNKHVEAVAYYKKALELDPDNETYKSNLKIAELK 126 (131)
T ss_dssp HHHHH--HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHH--HhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHH
Confidence 88888 777888888888887664 467777788777753
No 145
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.16 E-value=7.8e-10 Score=82.19 Aligned_cols=107 Identities=13% Similarity=-0.004 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHH
Q 019340 101 AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLG 176 (342)
Q Consensus 101 a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg 176 (342)
+..++.+|.++.. .+++++|+.+|++++.. +++.+++.+|.++...|++++|+.+++++++. .++.+++++|
T Consensus 4 ~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 79 (118)
T 1elw_A 4 VNELKEKGNKALS----VGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKA 79 (118)
T ss_dssp HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHH----cccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 3455556666655 35666666666666553 35556666666666666666666666665543 4556666666
Q ss_pred HHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHH
Q 019340 177 ISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLALCL 213 (342)
Q Consensus 177 ~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~ 213 (342)
.++. ..+++++|+.+|+++++. +++.++..++.+.
T Consensus 80 ~~~~--~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 80 AALE--FLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHHH--HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHH--HHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 6666 555666666666665543 3455555555443
No 146
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.16 E-value=1.6e-09 Score=80.38 Aligned_cols=108 Identities=13% Similarity=0.021 Sum_probs=90.9
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHH
Q 019340 136 STLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLAL 211 (342)
Q Consensus 136 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~ 211 (342)
.+.+++.+|.++...|++++|+.+|++++.. .++.+++.+|.++. ..+++++|+.+|+++++. .++.+++.+|.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~--~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 80 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYA--KKGDYQKAYEDGCKTVDLKPDWGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH--HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH--hhccHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 3567888999999999999999999998764 67899999999998 888999999999998874 57888999999
Q ss_pred HHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHH
Q 019340 212 CLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCY 249 (342)
Q Consensus 212 ~~~~g~~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y 249 (342)
++.. .+++++|+.+|+++++. +++.++..++.+.
T Consensus 81 ~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 81 ALEF----LNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHHH----TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHH----HhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 9887 67889999999988876 4677777777665
No 147
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.16 E-value=2.1e-09 Score=83.51 Aligned_cols=111 Identities=12% Similarity=0.032 Sum_probs=96.9
Q ss_pred CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC--C---HHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHH
Q 019340 99 REAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--S---TLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAG 171 (342)
Q Consensus 99 ~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~---~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a 171 (342)
.++..++.+|.++.. .+++++|+.+|+++++.. + ..+++.+|.+|...|++++|+.+|+++++. .++.+
T Consensus 26 ~~~~~~~~~a~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 101 (148)
T 2dba_A 26 SSVEQLRKEGNELFK----CGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKA 101 (148)
T ss_dssp CCHHHHHHHHHHHHT----TTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHH
T ss_pred HHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHH
Confidence 467888899999988 589999999999999875 2 788999999999999999999999998865 67999
Q ss_pred HHHHHHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhc
Q 019340 172 QFNLGISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLALCLHR 215 (342)
Q Consensus 172 ~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~ 215 (342)
++++|.++. ..+++++|+.+|+++++. +++.++..++.+...
T Consensus 102 ~~~~a~~~~--~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (148)
T 2dba_A 102 LYRRSQALE--KLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGP 145 (148)
T ss_dssp HHHHHHHHH--HHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred HHHHHHHHH--HcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence 999999999 889999999999998874 578888888887654
No 148
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.15 E-value=1.7e-09 Score=81.11 Aligned_cols=108 Identities=20% Similarity=0.337 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHH
Q 019340 101 AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLG 176 (342)
Q Consensus 101 a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg 176 (342)
+.+++.+|.++.. .+++++|+.+|++++.. ++..+++.+|.++...|++++|+.+|+++++. .++.+++.+|
T Consensus 9 ~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la 84 (125)
T 1na0_A 9 AEAWYNLGNAYYK----QGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLG 84 (125)
T ss_dssp HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHH
Confidence 5667777877777 47888888888888764 46777788888888888888888888887754 5677777888
Q ss_pred HHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHh
Q 019340 177 ISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLALCLH 214 (342)
Q Consensus 177 ~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~ 214 (342)
.++. ..+++++|+.+|+++++. .++.++..+|.++.
T Consensus 85 ~~~~--~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 122 (125)
T 1na0_A 85 NAYY--KQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 122 (125)
T ss_dssp HHHH--HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHH--HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 8877 677888888888877664 46777777777764
No 149
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.14 E-value=5.9e-10 Score=90.17 Aligned_cols=119 Identities=10% Similarity=0.071 Sum_probs=101.5
Q ss_pred hCCChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHH-HhcCC
Q 019340 75 SFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLM-YWEMD 151 (342)
Q Consensus 75 ~~~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~-~~~~~ 151 (342)
++..+++.+|...+...++..+. ++.+++.+|.+|.. .+++++|+.+|++++.. .++.+++.+|.+ +...|
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~ 93 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQ--NSEQWALLGEYYLW----QNDYSNSLLAYRQALQLRGENAELYAALATVLYYQAS 93 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCS--CHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTT
T ss_pred hhhccCHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcC
Confidence 35667888888888877777654 88999999999998 58999999999999885 589999999999 88899
Q ss_pred CH--HHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHcC
Q 019340 152 KK--EAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIAG 201 (342)
Q Consensus 152 ~~--~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~~ 201 (342)
++ ++|+.+|+++++. +++.+++++|.+|. ..+++++|+.+|+++++..
T Consensus 94 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~--~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 94 QHMTAQTRAMIDKALALDSNEITALMLLASDAF--MQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp TCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHTC
T ss_pred CcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHH--HcccHHHHHHHHHHHHhhC
Confidence 98 9999999999865 78999999999999 8899999999999998864
No 150
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.14 E-value=2.1e-08 Score=89.44 Aligned_cols=235 Identities=9% Similarity=-0.115 Sum_probs=173.1
Q ss_pred ChhHH-hhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCc-------CCHHHHHHHHHHHHhC--CCHHHHHHHHHHH
Q 019340 78 LPQLR-AASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVR-------KNLDKALDSFLKGAAR--GSTLAMVDAGLMY 147 (342)
Q Consensus 78 ~~~~~-~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~-------~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~ 147 (342)
.+++. +|.......+..-++ +..+++.-+.+.... +.. ..+++++.++..++.. .+..++.+.+.++
T Consensus 42 ~~e~s~eaL~~t~~~L~~nP~--~ytaWn~Rr~iL~~l-~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL 118 (331)
T 3dss_A 42 AGELDESVLELTSQILGANPD--FATLWNCRREVLQHL-ETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLL 118 (331)
T ss_dssp TTCCSHHHHHHHHHHHTTCTT--CHHHHHHHHHHHHHH-HHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHCch--hHHHHHHHHHHHHHh-cccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 34444 566556666655444 677777777777652 100 1167899999999885 4899999999999
Q ss_pred hcCC--CHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccC-HHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCC--
Q 019340 148 WEMD--KKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPAN-AEEAVKLLYQASIA--GHVRAQYQLALCLHRGRG-- 218 (342)
Q Consensus 148 ~~~~--~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~-~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~-- 218 (342)
...+ ++++++.++.++++. .+..||.+.+.+.. ..+. .++++.++.++++. .+..|+++.+.++..-..
T Consensus 119 ~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~--~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~ 196 (331)
T 3dss_A 119 SRLPEPNWARELELCARFLEADERNFHCWDYRRFVAA--QAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQP 196 (331)
T ss_dssp HHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH--HTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC
T ss_pred hccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH--HhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhcc
Confidence 8887 489999999999865 78899999999988 5556 68999999999885 589999999888764210
Q ss_pred --------CCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCc-------ccHHHHHHHHHHHHHcCC--HHHHH
Q 019340 219 --------VDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLP-------LSHRQARKWMKRAADCGH--GKAQL 279 (342)
Q Consensus 219 --------~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~-------~~~~~A~~~~~~a~~~~~--~~a~~ 279 (342)
....+++++.++.+++.. ++..+|+.+..++..+.|.. .-+++++.++++.++..+ ..++.
T Consensus 197 ~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~ 276 (331)
T 3dss_A 197 DSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLL 276 (331)
T ss_dssp ------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred ccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHH
Confidence 013578999999999865 78999988888887776532 358899999999988643 44443
Q ss_pred HHHHHh---hhcCCHHHHHHHHHHHHHcCcHHHHHHHHHHH
Q 019340 280 EHGLGL---FTEGEMMKAVVYLELATRAGETAADHVKNVIL 317 (342)
Q Consensus 280 ~Lg~~~---~~~~~~~~A~~~~~~a~~~~~~~a~~~~~~~~ 317 (342)
.++.+. ...+..++...|+.+..+.+|....++..+..
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~ 317 (331)
T 3dss_A 277 TIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRS 317 (331)
T ss_dssp HHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred HHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHH
Confidence 333322 13578889999999999999988877665443
No 151
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.14 E-value=2.8e-09 Score=98.60 Aligned_cols=155 Identities=10% Similarity=0.038 Sum_probs=85.3
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHhC----CCH----HHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--------CC
Q 019340 139 AMVDAGLMYWEMDKKEAAISLYRQAAVL----GDP----AGQFNLGISYLQAQPANAEEAVKLLYQASIA--------GH 202 (342)
Q Consensus 139 a~~~lg~~~~~~~~~~~A~~~~~~a~~~----~~~----~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--------~~ 202 (342)
++.+||.+|...|++++|+++|.++... +.. .....+|.++. ..+++++|+.++++++.. ..
T Consensus 57 al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 134 (434)
T 4b4t_Q 57 SILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQ--VPDSLDDQIFVCEKSIEFAKREKRVFLK 134 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCS--CCSCHHHHHHHHHHHHHHHHHSSCCSSH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHhCccHHH
Confidence 3455666666666666666666655432 111 12333444444 555666666666655431 12
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--------CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--
Q 019340 203 VRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--------GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC-- 272 (342)
Q Consensus 203 ~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~--------~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~-- 272 (342)
..++.+||.+|.. .+++.+|..+++++... ....++..+|.+|.. .+|+++|..+|+++...
T Consensus 135 ~~~~~~la~~~~~----~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~~~ 206 (434)
T 4b4t_Q 135 HSLSIKLATLHYQ----KKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHK----LRNLAKSKASLTAARTAAN 206 (434)
T ss_dssp HHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----ccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH----hCcHHHHHHHHHHHHHHhh
Confidence 4455566666655 45566666666655432 123456666666643 22666777666666542
Q ss_pred --C-C----HHHHHHHHHHhhhcCCHHHHHHHHHHHHH
Q 019340 273 --G-H----GKAQLEHGLGLFTEGEMMKAVVYLELATR 303 (342)
Q Consensus 273 --~-~----~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~ 303 (342)
. + ...+..+|.++...+++++|..+|..+.+
T Consensus 207 ~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 207 SIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred cCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 1 1 23345667777777777777777777654
No 152
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.14 E-value=1.9e-09 Score=81.55 Aligned_cols=109 Identities=20% Similarity=0.124 Sum_probs=80.6
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHH
Q 019340 136 STLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLAL 211 (342)
Q Consensus 136 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~ 211 (342)
++.+++.+|.++...|++++|+.+|++++.. .++.+++.+|.++. ..+++++|+.+|+++++. .++.+++.+|.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~--~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYS--KLGNYAGAVQDCERAICIDPAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH--HhhchHHHHHHHHHHHhcCccCHHHHHHHHH
Confidence 4566777888888888888888888887754 56788888888887 777888888888887764 46777777777
Q ss_pred HHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH
Q 019340 212 CLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYS 250 (342)
Q Consensus 212 ~~~~g~~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~ 250 (342)
++.. .+++++|+.+|++++.. ++..++..+|.++.
T Consensus 89 ~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 125 (131)
T 2vyi_A 89 ALSS----LNKHVEAVAYYKKALELDPDNETYKSNLKIAEL 125 (131)
T ss_dssp HHHH----TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHH----hCCHHHHHHHHHHHHhcCccchHHHHHHHHHHH
Confidence 7776 56777777777777664 35666666666663
No 153
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.13 E-value=6.1e-10 Score=92.00 Aligned_cols=110 Identities=15% Similarity=0.249 Sum_probs=97.9
Q ss_pred CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCH----------------HHHHHHHHHHhcCCCHHHHHHHHH
Q 019340 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GST----------------LAMVDAGLMYWEMDKKEAAISLYR 161 (342)
Q Consensus 100 ~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~----------------~a~~~lg~~~~~~~~~~~A~~~~~ 161 (342)
.+..+..+|.++.. .+++++|+.+|.+++.. .++ .+++++|.+|...|++++|+.+|+
T Consensus 37 ~~~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 112 (198)
T 2fbn_A 37 SAFDIKEEGNEFFK----KNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHAS 112 (198)
T ss_dssp HHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 35667888999988 58999999999999986 233 889999999999999999999999
Q ss_pred HHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhc
Q 019340 162 QAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLALCLHR 215 (342)
Q Consensus 162 ~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~ 215 (342)
++++. .++.+++++|.+|. ..+++++|+.+|+++++. +++.++..++.++..
T Consensus 113 ~al~~~p~~~~~~~~lg~~~~--~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 168 (198)
T 2fbn_A 113 KVLKIDKNNVKALYKLGVANM--YFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK 168 (198)
T ss_dssp HHHHHSTTCHHHHHHHHHHHH--HHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHhCcccHHHHHHHHHHHH--HcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence 99865 78999999999999 899999999999999874 689999999999875
No 154
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.11 E-value=1.7e-09 Score=100.09 Aligned_cols=193 Identities=12% Similarity=0.006 Sum_probs=156.2
Q ss_pred cHHHHHHHHhhCCChhHHhhHHHHHHHHHHhCcCCCH---------------HHHHHHHHHHHcCCCCcCCHHHHHHHHH
Q 019340 65 PFDVLNKIAASFTLPQLRAASLVCKSWNDALRPLREA---------------MVLLRWGKRFKHGRGVRKNLDKALDSFL 129 (342)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~a---------------~a~~~lg~~y~~g~g~~~~~~~A~~~~~ 129 (342)
|...+..+..++..|++.+|...+....+..+..++. .++..||.+|.. .+++++|+++|.
T Consensus 4 p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~----~~~~~~a~~~~~ 79 (434)
T 4b4t_Q 4 PGSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVT----MGAKDKLREFIP 79 (434)
T ss_dssp TTHHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHH----HTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHH----CCCHHHHHHHHH
Confidence 5567888888889999999999998888876654432 468899999998 689999999999
Q ss_pred HHHhC----CC----HHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--------CCHHHHHHHHHHHHcCCccCHHHHHHH
Q 019340 130 KGAAR----GS----TLAMVDAGLMYWEMDKKEAAISLYRQAAVL--------GDPAGQFNLGISYLQAQPANAEEAVKL 193 (342)
Q Consensus 130 ~A~~~----~~----~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--------~~~~a~~~Lg~~~~~g~~~~~~~A~~~ 193 (342)
++... +. ..+...+|.++...|++++|+.++++++.. .......+||.+|. ..|++.+|+.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~--~~g~~~~A~~~ 157 (434)
T 4b4t_Q 80 HSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHY--QKKQYKDSLAL 157 (434)
T ss_dssp HTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHH--HHTCHHHHHHH
T ss_pred HHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHH--HccChHHHHHH
Confidence 98773 22 234567899999999999999999998742 23678899999999 99999999999
Q ss_pred HHHHHHc--------CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC----C-C----HHHHHHHHHHHHcCCCCc
Q 019340 194 LYQASIA--------GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG----G-Y----VRAMYNTSLCYSFGEGLP 256 (342)
Q Consensus 194 ~~~a~~~--------~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~----~-~----~~a~~~lg~~y~~g~g~~ 256 (342)
++++... ...+++..+|.+|.. .+|+++|..+|+++... . + ...+..+|.++.. .
T Consensus 158 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~----~ 229 (434)
T 4b4t_Q 158 INDLLREFKKLDDKPSLVDVHLLESKVYHK----LRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCE----D 229 (434)
T ss_dssp HHHHHHHHTTSSCSTHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTS----S
T ss_pred HHHHHHHHHhcccchhHHHHHHHHHHHHHH----hCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHH----H
Confidence 9998752 136789999999998 88999999999999753 2 2 2345667777744 3
Q ss_pred ccHHHHHHHHHHHHH
Q 019340 257 LSHRQARKWMKRAAD 271 (342)
Q Consensus 257 ~~~~~A~~~~~~a~~ 271 (342)
+++.+|..+|..+.+
T Consensus 230 ~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 230 KDYKTAFSYFFESFE 244 (434)
T ss_dssp SCHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHH
Confidence 499999999999876
No 155
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.11 E-value=2.9e-09 Score=79.74 Aligned_cols=108 Identities=23% Similarity=0.314 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHH
Q 019340 137 TLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLALC 212 (342)
Q Consensus 137 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~ 212 (342)
..+++.+|.++...|++++|+.+|++++.. +++.+++.+|.++. ..+++++|+.+|+++++. .++.+++.+|.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~--~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY--KQGDYDEAIEYYQKALELDPNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHH--HhCCHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 567788888888888888888888888754 56788888888888 778888888888887764 467777888888
Q ss_pred HhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH
Q 019340 213 LHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYS 250 (342)
Q Consensus 213 ~~~g~~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~ 250 (342)
|.. .+++++|+.+|+++++. .++.++..+|.++.
T Consensus 87 ~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 122 (125)
T 1na0_A 87 YYK----QGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 122 (125)
T ss_dssp HHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHH----hcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 776 56777888888777664 46667777776663
No 156
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.11 E-value=4.7e-10 Score=85.31 Aligned_cols=90 Identities=24% Similarity=0.146 Sum_probs=62.6
Q ss_pred HHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHH
Q 019340 104 LLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISY 179 (342)
Q Consensus 104 ~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~ 179 (342)
++.+|.++.. .+++++|+..|++++.. +++.+++.+|.++...|++++|+..|+++++. +++.++++||.+|
T Consensus 20 ~~~~g~~~~~----~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~ 95 (121)
T 1hxi_A 20 PMEEGLSMLK----LANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSH 95 (121)
T ss_dssp HHHHHHHHHH----TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHH----cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 4666776666 46777777777777664 46777777777777777777777777776644 5677777777777
Q ss_pred HcCCccCHHHHHHHHHHHHH
Q 019340 180 LQAQPANAEEAVKLLYQASI 199 (342)
Q Consensus 180 ~~g~~~~~~~A~~~~~~a~~ 199 (342)
. ..+++++|+.+|+++++
T Consensus 96 ~--~~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 96 T--NEHNANAALASLRAWLL 113 (121)
T ss_dssp H--HHHHHHHHHHHHHHHHC
T ss_pred H--HcCCHHHHHHHHHHHHH
Confidence 7 66677777777777654
No 157
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.10 E-value=9.8e-10 Score=87.68 Aligned_cols=109 Identities=11% Similarity=0.091 Sum_probs=84.3
Q ss_pred CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--------------------CCHHHHHHHHHHHhcCCCHHHHHHH
Q 019340 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--------------------GSTLAMVDAGLMYWEMDKKEAAISL 159 (342)
Q Consensus 100 ~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--------------------~~~~a~~~lg~~~~~~~~~~~A~~~ 159 (342)
.+..+..+|..+.. .+++++|+.+|.+|+.. .++.+++++|.+|...|++++|+.+
T Consensus 10 ~a~~~~~~G~~~~~----~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~ 85 (162)
T 3rkv_A 10 SVEALRQKGNELFV----QKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEET 85 (162)
T ss_dssp HHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 45677888988888 58999999999999875 1346778888888888888888888
Q ss_pred HHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--CCH-HHHHHHHHHHh
Q 019340 160 YRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA--GHV-RAQYQLALCLH 214 (342)
Q Consensus 160 ~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~-~a~~~lg~~~~ 214 (342)
+++++.. +++.+++.+|.+|. ..+++++|+.+|+++++. +++ .+...|+.+..
T Consensus 86 ~~~al~~~p~~~~a~~~~g~~~~--~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~ 143 (162)
T 3rkv_A 86 SSEVLKREETNEKALFRRAKARI--AAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTE 143 (162)
T ss_dssp HHHHHHHSTTCHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred HHHHHhcCCcchHHHHHHHHHHH--HHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 8888754 67888888888888 778888888888887764 355 44556665553
No 158
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.10 E-value=3.9e-09 Score=81.96 Aligned_cols=110 Identities=17% Similarity=0.051 Sum_probs=92.6
Q ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCC--C---HHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHH
Q 019340 135 GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLG--D---PAGQFNLGISYLQAQPANAEEAVKLLYQASIA--GHVRAQY 207 (342)
Q Consensus 135 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~--~---~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~ 207 (342)
.++..++.+|..+...|++++|+.+|+++++.. + ..+++++|.+|. ..+++++|+.+|+++++. .++.+++
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~--~~~~~~~A~~~~~~~~~~~~~~~~~~~ 103 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHL--KLEDYDKAETEASKAIEKDGGDVKALY 103 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHH--HHccHHHHHHHHHHHHhhCccCHHHHH
Confidence 467888999999999999999999999999773 3 788999999998 888999999999998774 5788999
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH
Q 019340 208 QLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYS 250 (342)
Q Consensus 208 ~lg~~~~~g~~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~ 250 (342)
.+|.+|.. .+++++|+.+|++++.. .+..++..++.+..
T Consensus 104 ~~a~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 104 RRSQALEK----LGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp HHHHHHHH----HTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred HHHHHHHH----cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 99999887 67889999999988775 46777777777653
No 159
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.10 E-value=1.7e-09 Score=83.29 Aligned_cols=94 Identities=23% Similarity=0.258 Sum_probs=63.3
Q ss_pred CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHH
Q 019340 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNL 175 (342)
Q Consensus 100 ~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~L 175 (342)
.+..++.+|.++.. .+++++|+.+|++++.. .++.+++++|.++...|++++|+.+|++++.. +++.+++++
T Consensus 8 ~~~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 83 (137)
T 3q49_B 8 SAQELKEQGNRLFV----GRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 83 (137)
T ss_dssp CHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHH----hCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHH
Confidence 56666677776666 46777777777776664 35666777777777777777777777776643 556677777
Q ss_pred HHHHHcCCccCHHHHHHHHHHHHH
Q 019340 176 GISYLQAQPANAEEAVKLLYQASI 199 (342)
Q Consensus 176 g~~~~~g~~~~~~~A~~~~~~a~~ 199 (342)
|.+|. ..+++++|+.+|+++++
T Consensus 84 ~~~~~--~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 84 GQCQL--EMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHH--HTTCHHHHHHHHHHHHH
T ss_pred HHHHH--HHhhHHHHHHHHHHHHH
Confidence 77776 66677777777776654
No 160
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.10 E-value=6.5e-10 Score=84.51 Aligned_cols=93 Identities=13% Similarity=0.093 Sum_probs=78.1
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHh
Q 019340 139 AMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLALCLH 214 (342)
Q Consensus 139 a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~ 214 (342)
.++.+|.++...|++++|+..|++++.. +++.+++.+|.++. ..+++++|+.+|+++++. +++.++++||.+|.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~--~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQA--ENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 96 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 3577888888899999999999998754 78899999999998 888999999999998774 58889999999988
Q ss_pred cCCCCCCCHHHHHHHHHHHHHCC
Q 019340 215 RGRGVDFNLQEAARWYLRAAEGG 237 (342)
Q Consensus 215 ~g~~~~~~~~~A~~~~~~A~~~~ 237 (342)
. .+++++|+.+|+++++..
T Consensus 97 ~----~g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 97 N----EHNANAALASLRAWLLSQ 115 (121)
T ss_dssp H----HHHHHHHHHHHHHHHC--
T ss_pred H----cCCHHHHHHHHHHHHHhC
Confidence 7 678899999999988754
No 161
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.09 E-value=1.9e-09 Score=84.67 Aligned_cols=130 Identities=16% Similarity=0.147 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHhC----CCH----HHHHHHHHHHHcCCccCHHHHHHHHHHHHHc----CCHH
Q 019340 137 TLAMVDAGLMYWEMDKKEAAISLYRQAAVL----GDP----AGQFNLGISYLQAQPANAEEAVKLLYQASIA----GHVR 204 (342)
Q Consensus 137 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----~~~----~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~----~~~~ 204 (342)
..++..+|.+|...|++++|+.+|+++++. +++ .++.++|.++. ..+++++|+.+|+++++. +++.
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~a~~~~~~~~~~~ 86 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYI--FLGEFETASEYYKKTLLLARQLKDRA 86 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHHHHHhCCcH
Confidence 345677888888888888888888887754 222 36666777777 667777777777776542 1100
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc----CC----HH
Q 019340 205 AQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC----GH----GK 276 (342)
Q Consensus 205 a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~~----~~ 276 (342)
....+++++|.+|.. .+++++|+.+++++++. ++ ..
T Consensus 87 --------------------------------~~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 87 --------------------------------VEAQSCYSLGNTYTL----LQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp --------------------------------HHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred --------------------------------HHHHHHHHHHHHHHH----HhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 002344455555533 11555666665555432 12 45
Q ss_pred HHHHHHHHhhhcCCHHHHHHHHHHHHHc
Q 019340 277 AQLEHGLGLFTEGEMMKAVVYLELATRA 304 (342)
Q Consensus 277 a~~~Lg~~~~~~~~~~~A~~~~~~a~~~ 304 (342)
++.++|.++...|++++|..+++++++.
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 6788899999999999999999988765
No 162
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.09 E-value=2.1e-09 Score=81.33 Aligned_cols=108 Identities=14% Similarity=0.187 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CC-------H
Q 019340 101 AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GD-------P 169 (342)
Q Consensus 101 a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~-------~ 169 (342)
+..++.+|.++.. .+++++|+.+|++++.. .++.+++.+|.+|...|++++|+.+|+++++. .+ +
T Consensus 4 ~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 79 (131)
T 1elr_A 4 ALKEKELGNDAYK----KKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIA 79 (131)
T ss_dssp HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred HHHHHHHHHHHHH----hcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHH
Confidence 4556677777766 46777777777777764 36677777777777777777777777777654 22 6
Q ss_pred HHHHHHHHHHHcCCccCHHHHHHHHHHHHHcC-CHHHHHHHHHHHh
Q 019340 170 AGQFNLGISYLQAQPANAEEAVKLLYQASIAG-HVRAQYQLALCLH 214 (342)
Q Consensus 170 ~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~~-~~~a~~~lg~~~~ 214 (342)
.+++++|.+|. ..+++++|+.+|+++++.. ++.....++.+..
T Consensus 80 ~~~~~la~~~~--~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~ 123 (131)
T 1elr_A 80 KAYARIGNSYF--KEEKYKDAIHFYNKSLAEHRTPDVLKKCQQAEK 123 (131)
T ss_dssp HHHHHHHHHHH--HTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--HhccHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 67777777777 6677777777777766642 5566666665553
No 163
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.09 E-value=2.1e-09 Score=82.71 Aligned_cols=96 Identities=21% Similarity=0.111 Sum_probs=79.6
Q ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHH
Q 019340 135 GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLA 210 (342)
Q Consensus 135 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg 210 (342)
.++..++.+|.++...|++++|+.+|++++.. .++.+++++|.++. ..+++++|+.+|++++.. +++.+++++|
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~--~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYL--KMQQPEQALADCRRALELDGQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHH--HhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 46778888999998899999999999988764 67888888998888 788888999999888764 5788888888
Q ss_pred HHHhcCCCCCCCHHHHHHHHHHHHHC
Q 019340 211 LCLHRGRGVDFNLQEAARWYLRAAEG 236 (342)
Q Consensus 211 ~~~~~g~~~~~~~~~A~~~~~~A~~~ 236 (342)
.+|.. .+++++|+.+|+++++.
T Consensus 85 ~~~~~----~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 85 QCQLE----MESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHH----TTCHHHHHHHHHHHHHH
T ss_pred HHHHH----HhhHHHHHHHHHHHHHH
Confidence 88887 67888888888888764
No 164
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.06 E-value=3.9e-08 Score=87.62 Aligned_cols=218 Identities=7% Similarity=-0.091 Sum_probs=169.2
Q ss_pred CHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCC----------HHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCcc
Q 019340 120 NLDKALDSFLKGAARG--STLAMVDAGLMYWEMDK----------KEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPA 185 (342)
Q Consensus 120 ~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~----------~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~ 185 (342)
-.++|+.++.+++..+ +..+++.-+.++...++ +++++.++..++.. .+..+|.+.+.++..-...
T Consensus 45 ~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~ 124 (331)
T 3dss_A 45 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEP 124 (331)
T ss_dssp CSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSC
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcc
Confidence 3457999999999974 88999999988877655 68999999998854 7899999999998832222
Q ss_pred CHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCCCC-HHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCC-------
Q 019340 186 NAEEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFN-LQEAARWYLRAAEG--GYVRAMYNTSLCYSFGE------- 253 (342)
Q Consensus 186 ~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~-~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~------- 253 (342)
++++++.++.++++. .+..|++.-+.++.. .+. .++++.++.++++. .+..||++.+.++..-.
T Consensus 125 ~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~----l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~ 200 (331)
T 3dss_A 125 NWARELELCARFLEADERNFHCWDYRRFVAAQ----AAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGP 200 (331)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC----
T ss_pred cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhcccccc
Confidence 689999999999885 589999999999876 333 68999999999986 68899999998875421
Q ss_pred -C--CcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhhc-----------CCHHHHHHHHHHHHHcCcHHHHHHHHHHH
Q 019340 254 -G--LPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTE-----------GEMMKAVVYLELATRAGETAADHVKNVIL 317 (342)
Q Consensus 254 -g--~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~-----------~~~~~A~~~~~~a~~~~~~~a~~~~~~~~ 317 (342)
+ ....+++++.++.+++.. ++..+++.+..++... +.+++++.++...++..|......++.+.
T Consensus 201 ~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~ 280 (331)
T 3dss_A 201 QGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIIL 280 (331)
T ss_dssp --CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHH
Confidence 0 114689999999999875 7788887666666554 45899999999999998776666655543
Q ss_pred h--hc-ChhcHHHHHHHHHhhhcCCCC
Q 019340 318 Q--QL-SATSRDRAMLVVDSWRAMPSL 341 (342)
Q Consensus 318 ~--~~-~~~~~~~a~~~~~~~~~~~~~ 341 (342)
. .+ ..+..++....+.++.+..|-
T Consensus 281 ~~~~~~~~~~~~~~~~~l~~l~~~Dp~ 307 (331)
T 3dss_A 281 LMRALDPLLYEKETLQYFSTLKAVDPM 307 (331)
T ss_dssp HHHHHCTTTTHHHHHHHHHHHHHHCGG
T ss_pred HHHhhcccccHHHHHHHHHHHHHhCcc
Confidence 2 11 234566777788888777764
No 165
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.06 E-value=3.9e-09 Score=79.89 Aligned_cols=107 Identities=12% Similarity=0.131 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--CC-------HHH
Q 019340 137 TLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA--GH-------VRA 205 (342)
Q Consensus 137 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~-------~~a 205 (342)
+.+++.+|.++...|++++|+.+|+++++. .++.+++++|.+|. ..+++++|+.+|+++++. .+ +.+
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~--~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 81 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYF--EKGDYNKCRELCEKAIEVGRENREDYRQIAKA 81 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH--HHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHH--HhccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence 467788999999999999999999998865 67888999999998 788999999999988764 23 777
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHH
Q 019340 206 QYQLALCLHRGRGVDFNLQEAARWYLRAAEG-GYVRAMYNTSLCY 249 (342)
Q Consensus 206 ~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~-~~~~a~~~lg~~y 249 (342)
++++|.+|.. .+++++|+.+|+++++. .++.....++.+.
T Consensus 82 ~~~la~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~ 122 (131)
T 1elr_A 82 YARIGNSYFK----EEKYKDAIHFYNKSLAEHRTPDVLKKCQQAE 122 (131)
T ss_dssp HHHHHHHHHH----TTCHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHH----hccHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 8888888876 66788888888888775 3556666666655
No 166
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.05 E-value=2.7e-09 Score=85.06 Aligned_cols=95 Identities=19% Similarity=0.122 Sum_probs=70.2
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--------------------CCHHHHHHHHHHHHcCCccCHHHHHHHHH
Q 019340 136 STLAMVDAGLMYWEMDKKEAAISLYRQAAVL--------------------GDPAGQFNLGISYLQAQPANAEEAVKLLY 195 (342)
Q Consensus 136 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--------------------~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~ 195 (342)
.+..+...|..++..|++++|+.+|.+++.. .++.+++++|.+|. ..+++++|+.+++
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~--~~~~~~~A~~~~~ 87 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYL--NIGDLHEAEETSS 87 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHH--HHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHH--hcCcHHHHHHHHH
Confidence 4567889999999999999999999999864 23456777777777 6677777777777
Q ss_pred HHHHc--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC
Q 019340 196 QASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG 236 (342)
Q Consensus 196 ~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~ 236 (342)
++++. .++.+++.+|.+|.. .+++++|+.+|++++..
T Consensus 88 ~al~~~p~~~~a~~~~g~~~~~----~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 88 EVLKREETNEKALFRRAKARIA----AWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred HHHhcCCcchHHHHHHHHHHHH----HhcHHHHHHHHHHHHhc
Confidence 76653 466777777777766 55677777777776655
No 167
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.05 E-value=1.7e-09 Score=85.46 Aligned_cols=92 Identities=16% Similarity=0.027 Sum_probs=50.8
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHhC--C-------CH-----HHHHHHHHHHHcCCccCHHHHHHHHHHHHHc---
Q 019340 138 LAMVDAGLMYWEMDKKEAAISLYRQAAVL--G-------DP-----AGQFNLGISYLQAQPANAEEAVKLLYQASIA--- 200 (342)
Q Consensus 138 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~-------~~-----~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--- 200 (342)
..+.+.|..++..|++++|+..|++|++. . +. .++.++|.++. ..+++++|+.+|.++++.
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~--~Lgr~~eAl~~~~kAL~l~n~ 89 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALA--GLRSFDEALHSADKALHYFNR 89 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHH--HCCCHHHHHHHHHHHHHhhhc
Confidence 44455566665666666666666665533 2 22 25666666666 556666666666665543
Q ss_pred ------CCHHHH----HHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Q 019340 201 ------GHVRAQ----YQLALCLHRGRGVDFNLQEAARWYLRAAE 235 (342)
Q Consensus 201 ------~~~~a~----~~lg~~~~~g~~~~~~~~~A~~~~~~A~~ 235 (342)
+++.++ ++.|.++.. .+++++|+..|++|++
T Consensus 90 ~~e~~pd~~~A~~~~~~~rG~aL~~----lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 90 RGELNQDEGKLWISAVYSRALALDG----LGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HCCTTSTHHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHH
T ss_pred cccCCCchHHHHHHHHHhHHHHHHH----CCCHHHHHHHHHHHHh
Confidence 344555 555555554 4455555555555544
No 168
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.04 E-value=2.9e-09 Score=80.99 Aligned_cols=92 Identities=18% Similarity=0.148 Sum_probs=60.8
Q ss_pred HHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCH---HHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CC---HHHH
Q 019340 103 VLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GST---LAMVDAGLMYWEMDKKEAAISLYRQAAVL--GD---PAGQ 172 (342)
Q Consensus 103 a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~---~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~---~~a~ 172 (342)
+++.+|.++.. .+++++|+..|++++.. +++ .+++.+|.+|...|++++|+.+|+++++. ++ +.++
T Consensus 4 ~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~ 79 (129)
T 2xev_A 4 TAYNVAFDALK----NGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGL 79 (129)
T ss_dssp CHHHHHHHHHH----TTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHH
T ss_pred HHHHHHHHHHH----hCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHH
Confidence 34566666666 46777777777777663 233 56677777777777777777777776653 44 6667
Q ss_pred HHHHHHHHcCCccCHHHHHHHHHHHHHc
Q 019340 173 FNLGISYLQAQPANAEEAVKLLYQASIA 200 (342)
Q Consensus 173 ~~Lg~~~~~g~~~~~~~A~~~~~~a~~~ 200 (342)
+.+|.+|. ..+++++|+.+|+++++.
T Consensus 80 ~~la~~~~--~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 80 LKLGLSQY--GEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHHHH--HTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHH--HcCCHHHHHHHHHHHHHH
Confidence 77777776 666777777777776653
No 169
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.04 E-value=1.4e-09 Score=80.04 Aligned_cols=95 Identities=13% Similarity=0.038 Sum_probs=62.1
Q ss_pred CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--C--CHHHHH
Q 019340 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--G--DPAGQF 173 (342)
Q Consensus 100 ~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~--~~~a~~ 173 (342)
++.+++.+|.++.. .+++++|+.+|+++++. .+..+++.+|.++...|++++|+.+|+++++. . ++.+++
T Consensus 5 ~~~~~~~~~~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 80 (112)
T 2kck_A 5 NPEEYYLEGVLQYD----AGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWA 80 (112)
T ss_dssp STTGGGGHHHHHHS----SCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHH
T ss_pred cHHHHHHHHHHHHH----hhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHH
Confidence 34555666666666 46777777777776664 35666667777777777777777777776654 4 566666
Q ss_pred HHHHHHHcCCc-cCHHHHHHHHHHHHHc
Q 019340 174 NLGISYLQAQP-ANAEEAVKLLYQASIA 200 (342)
Q Consensus 174 ~Lg~~~~~g~~-~~~~~A~~~~~~a~~~ 200 (342)
++|.++. .. +++++|+.+|++++..
T Consensus 81 ~l~~~~~--~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 81 AKADALR--YIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHHHHT--TCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHH--HHhCCHHHHHHHHHHHhhc
Confidence 6776666 66 6666777766666543
No 170
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.04 E-value=2e-09 Score=101.12 Aligned_cols=109 Identities=17% Similarity=0.162 Sum_probs=50.4
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CC---------------HHHHHHHHHHHHcCCccCHHHHHHHHHHHH
Q 019340 136 STLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GD---------------PAGQFNLGISYLQAQPANAEEAVKLLYQAS 198 (342)
Q Consensus 136 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~---------------~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~ 198 (342)
.+.++.++|.++...|++++|+.+|++|++. .+ ..+++++|.+|. ..+++++|+.+|++++
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~--~~g~~~~A~~~~~~al 344 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYL--KLREYTKAVECCDKAL 344 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHH--HhcCHHHHHHHHHHHH
Confidence 3444444444444444444444444444432 22 344455555555 4445555555555544
Q ss_pred Hc--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH
Q 019340 199 IA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYS 250 (342)
Q Consensus 199 ~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~ 250 (342)
+. .++.+++++|.+|.. .+++++|+.+|++|++. .+..++.+++.++.
T Consensus 345 ~~~p~~~~a~~~~g~a~~~----~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 396 (457)
T 1kt0_A 345 GLDSANEKGLYRRGEAQLL----MNEFESAKGDFEKVLEVNPQNKAARLQISMCQK 396 (457)
T ss_dssp HHSTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHTTC----CHHHHHHHHHH
T ss_pred hcCCccHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 42 344555555555544 44455555555555444 23444455555443
No 171
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.04 E-value=2.2e-09 Score=84.85 Aligned_cols=95 Identities=9% Similarity=-0.003 Sum_probs=83.9
Q ss_pred CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC---------CH-----HHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 019340 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG---------ST-----LAMVDAGLMYWEMDKKEAAISLYRQAAV 165 (342)
Q Consensus 100 ~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---------~~-----~a~~~lg~~~~~~~~~~~A~~~~~~a~~ 165 (342)
.+..+..+|..+.. .+++++|+..|++|++.. +. .++.++|.++...|++++|+..|.+|++
T Consensus 10 ~a~~~~~~G~~l~~----~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~ 85 (159)
T 2hr2_A 10 GAYLALSDAQRQLV----AGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALH 85 (159)
T ss_dssp HHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45667888999888 589999999999999863 22 3899999999999999999999999986
Q ss_pred C---------CCHHHH----HHHHHHHHcCCccCHHHHHHHHHHHHHc
Q 019340 166 L---------GDPAGQ----FNLGISYLQAQPANAEEAVKLLYQASIA 200 (342)
Q Consensus 166 ~---------~~~~a~----~~Lg~~~~~g~~~~~~~A~~~~~~a~~~ 200 (342)
. +++.+| +++|.++. ..+++++|+.+|+++++.
T Consensus 86 l~n~~~e~~pd~~~A~~~~~~~rG~aL~--~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 86 YFNRRGELNQDEGKLWISAVYSRALALD--GLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp HHHHHCCTTSTHHHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHH
T ss_pred hhhccccCCCchHHHHHHHHHhHHHHHH--HCCCHHHHHHHHHHHHhc
Confidence 5 668899 99999999 999999999999999874
No 172
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.02 E-value=3.9e-09 Score=80.27 Aligned_cols=93 Identities=17% Similarity=0.090 Sum_probs=76.9
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCH---HHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--CC---HHHHH
Q 019340 138 LAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDP---AGQFNLGISYLQAQPANAEEAVKLLYQASIA--GH---VRAQY 207 (342)
Q Consensus 138 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~---~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~---~~a~~ 207 (342)
.+++.+|.++...|++++|+..|+++++. +++ .+++.+|.++. ..+++++|+.+|+++++. ++ +.+++
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~--~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~ 80 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYY--ATRNFQLAEAQFRDLVSRYPTHDKAAGGLL 80 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHCTTSTTHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH--HhccHHHHHHHHHHHHHHCCCCcccHHHHH
Confidence 35678889999999999999999998864 555 78889999998 888999999999998774 45 78888
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHHHC
Q 019340 208 QLALCLHRGRGVDFNLQEAARWYLRAAEG 236 (342)
Q Consensus 208 ~lg~~~~~g~~~~~~~~~A~~~~~~A~~~ 236 (342)
.+|.+|.. .+++++|+.+|++++..
T Consensus 81 ~la~~~~~----~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 81 KLGLSQYG----EGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHH----cCCHHHHHHHHHHHHHH
Confidence 88888887 67888888888888765
No 173
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.02 E-value=4.9e-09 Score=98.40 Aligned_cols=119 Identities=13% Similarity=0.061 Sum_probs=55.4
Q ss_pred CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--CC---------------HHHHHHHHHHHhcCCCCCCCHHHHHHH
Q 019340 167 GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA--GH---------------VRAQYQLALCLHRGRGVDFNLQEAARW 229 (342)
Q Consensus 167 ~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~---------------~~a~~~lg~~~~~g~~~~~~~~~A~~~ 229 (342)
..+.++.++|.+++ ..+++++|+.+|+++++. .+ ..+++++|.||.. .+++++|+.+
T Consensus 266 ~~a~~~~~~G~~~~--~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~----~g~~~~A~~~ 339 (457)
T 1kt0_A 266 EQAAIVKEKGTVYF--KGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLK----LREYTKAVEC 339 (457)
T ss_dssp HHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHH----TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHH----hcCHHHHHHH
Confidence 34445555555555 444555555555554432 22 3445555555544 4445555555
Q ss_pred HHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhhcCCHHHHH
Q 019340 230 YLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAV 295 (342)
Q Consensus 230 ~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~ 295 (342)
|++|++. .++.+++++|.+|.. .| ++++|+.+|+++++. ++..++.+|+.++...+++++|.
T Consensus 340 ~~~al~~~p~~~~a~~~~g~a~~~-~g---~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 340 CDKALGLDSANEKGLYRRGEAQLL-MN---EFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHHHHHHSTTCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCccHHHHHHHHHHHHH-cc---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 5555443 344455555555533 11 555555555555443 23344455555555544444443
No 174
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.01 E-value=1.2e-09 Score=98.38 Aligned_cols=149 Identities=12% Similarity=0.029 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC
Q 019340 137 TLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQFNLGISYLQAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRG 216 (342)
Q Consensus 137 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g 216 (342)
+..+..+|..+...|++++|+.+|++++........ +. ..+++.++...+. ..+++++|.||..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~------~~--~~~~~~~~~~~l~-------~~~~~nla~~~~~- 242 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM------FQ--LYGKYQDMALAVK-------NPCHLNIAACLIK- 242 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH------HT--CCHHHHHHHHHHH-------THHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh------hh--hcccHHHHHHHHH-------HHHHHHHHHHHHH-
Confidence 456777888888888888888888888766544331 11 2333344333321 2356677777765
Q ss_pred CCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHh-hhcCCH
Q 019340 217 RGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGL-FTEGEM 291 (342)
Q Consensus 217 ~~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~-~~~~~~ 291 (342)
.+++++|+.+|+++++. .+..+++++|.+|.. .| ++++|+.+|++++.. ++..++.+|+.+. ...+..
T Consensus 243 ---~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~-~g---~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~ 315 (338)
T 2if4_A 243 ---LKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAE-LG---QMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALY 315 (338)
T ss_dssp ---TTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT-TT---CHHHHHHHHHHTTC-----------------------
T ss_pred ---cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cC---CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Confidence 55677777777777664 456677777777743 22 777777777777544 4556666666663 334566
Q ss_pred HHHHHHHHHHHHcCcHH
Q 019340 292 MKAVVYLELATRAGETA 308 (342)
Q Consensus 292 ~~A~~~~~~a~~~~~~~ 308 (342)
+++...|++++...+.+
T Consensus 316 ~~a~~~~~~~l~~~p~~ 332 (338)
T 2if4_A 316 QKQKEMYKGIFKGKDEG 332 (338)
T ss_dssp -----------------
T ss_pred HHHHHHHHHhhCCCCCC
Confidence 66777777776665443
No 175
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.01 E-value=3.7e-09 Score=96.42 Aligned_cols=109 Identities=14% Similarity=0.124 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHh----------------C--CCHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 019340 101 AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAA----------------R--GSTLAMVDAGLMYWEMDKKEAAISLYRQ 162 (342)
Q Consensus 101 a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~----------------~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~ 162 (342)
+..+..+|..+.. .+++++|+..|++|++ . .+..+++++|.+|...|++++|+.+|++
T Consensus 223 a~~~~~~g~~~~~----~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~ 298 (370)
T 1ihg_A 223 SEDLKNIGNTFFK----SQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLE 298 (370)
T ss_dssp HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----hcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 3456677777776 4777777777777776 2 2445666777777777777777777777
Q ss_pred HHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhc
Q 019340 163 AAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLALCLHR 215 (342)
Q Consensus 163 a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~ 215 (342)
+++. +++.+++++|.+|. ..+++++|+.+|+++++. ++..++..|+.++..
T Consensus 299 al~~~p~~~~a~~~lg~~~~--~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~ 353 (370)
T 1ihg_A 299 ALEIDPSNTKALYRRAQGWQ--GLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQK 353 (370)
T ss_dssp HHTTCTTCHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHhCchhHHHHHHHHHHHH--HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 7654 55667777777776 666777777777776653 456666666666653
No 176
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.00 E-value=2.5e-09 Score=78.68 Aligned_cols=95 Identities=17% Similarity=0.031 Sum_probs=71.1
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--C--CHHHHHHH
Q 019340 136 STLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA--G--HVRAQYQL 209 (342)
Q Consensus 136 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~--~~~a~~~l 209 (342)
++.+++.+|.++...|++++|+.+|+++++. .++.+++++|.++. ..+++++|+.+|+++++. . ++.+++.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~--~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l 82 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALY--NLERYEEAVDCYNYVINVIEDEYNKDVWAAK 82 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHTSCCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH--HccCHHHHHHHHHHHHHhCcccchHHHHHHH
Confidence 4556677888888888888888888887754 56777888888887 777888888888887764 4 67777777
Q ss_pred HHHHhcCCCCC-CCHHHHHHHHHHHHHC
Q 019340 210 ALCLHRGRGVD-FNLQEAARWYLRAAEG 236 (342)
Q Consensus 210 g~~~~~g~~~~-~~~~~A~~~~~~A~~~ 236 (342)
|.++.. . +++++|+.++++++..
T Consensus 83 ~~~~~~----~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 83 ADALRY----IEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHHTT----CSSCSHHHHHHHHHHGGG
T ss_pred HHHHHH----HhCCHHHHHHHHHHHhhc
Confidence 777776 5 6777777777777654
No 177
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.99 E-value=1.6e-09 Score=97.57 Aligned_cols=147 Identities=10% Similarity=-0.015 Sum_probs=69.0
Q ss_pred CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 019340 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQFNLGISY 179 (342)
Q Consensus 100 ~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~ 179 (342)
.+..++.+|.++.. .+++++|+.+|++|+....... .+...++++++...+. ..+++++|.+|
T Consensus 178 ~a~~~~~~g~~~~~----~g~~~~A~~~y~~Al~~~p~~~------~~~~~~~~~~~~~~l~-------~~~~~nla~~~ 240 (338)
T 2if4_A 178 AADRRKMDGNSLFK----EEKLEEAMQQYEMAIAYMGDDF------MFQLYGKYQDMALAVK-------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHHHTCS----SSCCHHHHHHHHHHHHHSCHHH------HHTCCHHHHHHHHHHH-------THHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHhccch------hhhhcccHHHHHHHHH-------HHHHHHHHHHH
Confidence 45678899999988 6899999999999998754332 1223334444433322 12555566666
Q ss_pred HcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCC
Q 019340 180 LQAQPANAEEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGL 255 (342)
Q Consensus 180 ~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~ 255 (342)
. ..+++++|+.+|+++++. .++.+++++|.+|.. .+++++|+.+|+++++. ++..++.+|+.+.....
T Consensus 241 ~--~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~----~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~-- 312 (338)
T 2if4_A 241 I--KLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAE----LGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEK-- 312 (338)
T ss_dssp H--TTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT----TTCHHHHHHHHHHTTC----------------------
T ss_pred H--HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH--
Confidence 5 555666666666665543 355566666666655 45566666666665443 34555555555543322
Q ss_pred cccHHHHHHHHHHHHHc
Q 019340 256 PLSHRQARKWMKRAADC 272 (342)
Q Consensus 256 ~~~~~~A~~~~~~a~~~ 272 (342)
...+++...|++++..
T Consensus 313 -~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 313 -ALYQKQKEMYKGIFKG 328 (338)
T ss_dssp -----------------
T ss_pred -HHHHHHHHHHHHhhCC
Confidence 2555555566555543
No 178
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.97 E-value=7.5e-08 Score=86.26 Aligned_cols=224 Identities=10% Similarity=-0.098 Sum_probs=165.5
Q ss_pred hHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcC-C-CHHH
Q 019340 80 QLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEM-D-KKEA 155 (342)
Q Consensus 80 ~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~-~-~~~~ 155 (342)
...+|...+...+..-++ +..+++..+.+.... ..++++++.++.+++..+ +..++...+.++... + ++++
T Consensus 69 ~se~AL~lt~~~L~~nP~--~ytaWn~R~~iL~~l---~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~ 143 (349)
T 3q7a_A 69 KSERALELTEIIVRMNPA--HYTVWQYRFSLLTSL---NKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVS 143 (349)
T ss_dssp CSHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHT---TCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHH
T ss_pred CCHHHHHHHHHHHHhCch--hHHHHHHHHHHHHHh---hhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHH
Confidence 345788777888877665 788888889888773 136999999999999874 899999999999887 7 8999
Q ss_pred HHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCH--------HHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCC---C
Q 019340 156 AISLYRQAAVL--GDPAGQFNLGISYLQAQPANA--------EEAVKLLYQASIA--GHVRAQYQLALCLHRGRGV---D 220 (342)
Q Consensus 156 A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~--------~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~---~ 220 (342)
++.++.++++. .+..++.+.+.+.. ..+.+ .+++.++.++++. .+..|+++.+.++..-.+. .
T Consensus 144 EL~~~~k~L~~dpkNy~AW~~R~wvl~--~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~ 221 (349)
T 3q7a_A 144 EIEYIHGSLLPDPKNYHTWAYLHWLYS--HFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSS 221 (349)
T ss_dssp HHHHHHHHTSSCTTCHHHHHHHHHHHH--HHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHH--HhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccch
Confidence 99999999976 78899999998887 33333 3899999999885 5899999999998752211 1
Q ss_pred CCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcC-CCCc---------------ccHHHHHHHHHHHHH--------cCC
Q 019340 221 FNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFG-EGLP---------------LSHRQARKWMKRAAD--------CGH 274 (342)
Q Consensus 221 ~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g-~g~~---------------~~~~~A~~~~~~a~~--------~~~ 274 (342)
..++++++++.+++.. ++..+|+++..++... .+.. .....-.......+. ...
T Consensus 222 ~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 301 (349)
T 3q7a_A 222 RSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPV 301 (349)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCC
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCc
Confidence 1278999999999875 6889999988888653 2200 011222222222221 134
Q ss_pred HHHHHHHHHHhhhcCCHHHHHHHHHHHH-HcCcHHHH
Q 019340 275 GKAQLEHGLGLFTEGEMMKAVVYLELAT-RAGETAAD 310 (342)
Q Consensus 275 ~~a~~~Lg~~~~~~~~~~~A~~~~~~a~-~~~~~~a~ 310 (342)
.-++..|+.+|...|+.++|...|+... +.++....
T Consensus 302 ~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~ 338 (349)
T 3q7a_A 302 PLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAG 338 (349)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHH
Confidence 6788899999999999999999999987 44665544
No 179
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.96 E-value=3.3e-10 Score=107.01 Aligned_cols=120 Identities=12% Similarity=0.079 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHH
Q 019340 102 MVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGI 177 (342)
Q Consensus 102 ~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~ 177 (342)
.+++.+|.++.. .+++++|+.+|++|++. .++.+++++|.+|...|++++|+.+|+++++. +++.+++++|.
T Consensus 7 ~~~~~lg~~~~~----~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~ 82 (477)
T 1wao_1 7 EELKTQANDYFK----AKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAA 82 (477)
T ss_dssp TTSSSSSSSTTT----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHH----hCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 344556666666 58999999999999986 47899999999999999999999999999976 77999999999
Q ss_pred HHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHH--HhcCCCCCCCHHHHHHHHH
Q 019340 178 SYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLALC--LHRGRGVDFNLQEAARWYL 231 (342)
Q Consensus 178 ~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~--~~~g~~~~~~~~~A~~~~~ 231 (342)
+|. ..+++++|+.+|+++++. +++.++.+++.+ +.. .+++++|+..++
T Consensus 83 ~~~--~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~----~g~~~~A~~~~~ 134 (477)
T 1wao_1 83 SNM--ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVK----QKAFERAIAGDE 134 (477)
T ss_dssp HHH--HHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHH----HHHHCCC-----
T ss_pred HHH--HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH----HHHHHHHhcccc
Confidence 999 899999999999999874 578889999988 554 567888999988
No 180
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.96 E-value=2.2e-09 Score=80.73 Aligned_cols=88 Identities=14% Similarity=0.096 Sum_probs=71.4
Q ss_pred cCCHHHHHHHHHHHHhCC-----CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHH
Q 019340 118 RKNLDKALDSFLKGAARG-----STLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEA 190 (342)
Q Consensus 118 ~~~~~~A~~~~~~A~~~~-----~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A 190 (342)
.+++++|+.+|+++++.+ ++.+++++|.+|...|++++|+.+|+++++. +++.+++++|.++. ..+++++|
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~--~~g~~~~A 80 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLY--NLGRYEQG 80 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH--HHTCHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHH--HcCCHHHH
Confidence 478889999999999873 4578899999999999999999999998865 78999999999999 88899999
Q ss_pred HHHHHHHHHc--CCHHHHH
Q 019340 191 VKLLYQASIA--GHVRAQY 207 (342)
Q Consensus 191 ~~~~~~a~~~--~~~~a~~ 207 (342)
+.+|++++.. +++....
T Consensus 81 ~~~~~~al~~~p~~~~~~~ 99 (117)
T 3k9i_A 81 VELLLKIIAETSDDETIQS 99 (117)
T ss_dssp HHHHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHH
Confidence 9999998764 5665543
No 181
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.95 E-value=1.9e-08 Score=88.56 Aligned_cols=238 Identities=7% Similarity=-0.040 Sum_probs=135.0
Q ss_pred HHHHHhhCCChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHc-CCCCcCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 019340 69 LNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKH-GRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMY 147 (342)
Q Consensus 69 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~-g~g~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~~ 147 (342)
+-.+...|..|+++.+... .........-...+.+-+.|.. |. +.... .......+...++..+
T Consensus 17 lf~ikn~fy~G~yq~~i~e----~~~~~~~~~~~~~~~~~Rs~iAlg~-----~~~~~------~~~~~~~a~~~la~~~ 81 (310)
T 3mv2_B 17 YFNIKQNYYTGNFVQCLQE----IEKFSKVTDNTLLFYKAKTLLALGQ-----YQSQD------PTSKLGKVLDLYVQFL 81 (310)
T ss_dssp THHHHHHHTTTCHHHHTHH----HHTSSCCCCHHHHHHHHHHHHHTTC-----CCCCC------SSSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHH----HHhcCccchHHHHHHHHHHHHHcCC-----CccCC------CCCHHHHHHHHHHHHh
Confidence 4456778899999999742 2322222333444444555544 22 11000 0111112222233332
Q ss_pred hcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc----CCHHHHHHHHHHHhcCCCCCC
Q 019340 148 WEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA----GHVRAQYQLALCLHRGRGVDF 221 (342)
Q Consensus 148 ~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~ 221 (342)
.. + |+..+++.++. .++.+.+.+|.++. ..+++++|+.++.+.++. ++.++...++.++.. .+
T Consensus 82 -~~-~---a~~~l~~l~~~~~~~~~~~~~la~i~~--~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~----~~ 150 (310)
T 3mv2_B 82 -DT-K---NIEELENLLKDKQNSPYELYLLATAQA--ILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALL----NN 150 (310)
T ss_dssp -TT-T---CCHHHHHTTTTSCCCHHHHHHHHHHHH--HHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHH----TT
T ss_pred -cc-c---HHHHHHHHHhcCCCCcHHHHHHHHHHH--HcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHH----CC
Confidence 21 1 66777776653 45566677777777 677888888888877665 356777777777776 66
Q ss_pred CHHHHHHHHHHHHHCCC------HHHHHHHHHH--HH-cCCCCcccHHHHHHHHHHHHHcCC----HHHHHHHHHHhhhc
Q 019340 222 NLQEAARWYLRAAEGGY------VRAMYNTSLC--YS-FGEGLPLSHRQARKWMKRAADCGH----GKAQLEHGLGLFTE 288 (342)
Q Consensus 222 ~~~~A~~~~~~A~~~~~------~~a~~~lg~~--y~-~g~g~~~~~~~A~~~~~~a~~~~~----~~a~~~Lg~~~~~~ 288 (342)
+.++|.+.+++..+... -....+|+.. .. .|.+ ++.+|...|++..+..+ ...+++ ++...
T Consensus 151 r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~---~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~ 224 (310)
T 3mv2_B 151 NVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKE---TATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQ 224 (310)
T ss_dssp CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCS---TTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHH
T ss_pred CHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCc---cHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHc
Confidence 77888888877655543 3344454433 22 2222 67777888888766532 223333 67777
Q ss_pred CCHHHHHHHHHHHHHc------------CcHHHHHHHHHHHhhcChhcHHHHHHHHHhhhcCCCCC
Q 019340 289 GEMMKAVVYLELATRA------------GETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPSLH 342 (342)
Q Consensus 289 ~~~~~A~~~~~~a~~~------------~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 342 (342)
|++++|...++...+. +++++..++..+...+ ++ ++.++.+++++.+|.|
T Consensus 225 g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~l--gk--~a~~l~~qL~~~~P~h 286 (310)
T 3mv2_B 225 RNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQ--GL--DTEDLTNQLVKLDHEH 286 (310)
T ss_dssp TCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHT--TC--TTHHHHHHHHHTTCCC
T ss_pred CCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHh--Ch--HHHHHHHHHHHhCCCC
Confidence 8888888888765442 2344443333333333 22 5667777777777765
No 182
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.95 E-value=9.8e-09 Score=93.64 Aligned_cols=135 Identities=16% Similarity=0.074 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC
Q 019340 137 TLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQFNLGISYLQAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRG 216 (342)
Q Consensus 137 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g 216 (342)
+..+..+|..+...|++++|+..|+++++...... . ..+.+++.. ..+.++.+++++|.+|..
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~--------~---~~~~~~~~~-----~~~~~~~~~~nla~~~~~- 285 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSR--------A---AAEDADGAK-----LQPVALSCVLNIGACKLK- 285 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH--------H---HSCHHHHGG-----GHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCc--------c---ccChHHHHH-----HHHHHHHHHHHHHHHHHh-
Confidence 45688899999999999999999999987310000 0 000000000 112234455555555554
Q ss_pred CCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhhcCCHH
Q 019340 217 RGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMM 292 (342)
Q Consensus 217 ~~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~ 292 (342)
.+++++|+.+|++|++. .++.+++++|.+|.. . +++++|+.+|++|++. ++..++..|+.++...++.+
T Consensus 286 ---~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-~---g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~ 358 (370)
T 1ihg_A 286 ---MSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQG-L---KEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQK 358 (370)
T ss_dssp ---TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH-T---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHH
T ss_pred ---ccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH-c---cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence 44555555555555544 345555555555543 1 2555555555555544 34555555555555555555
Q ss_pred HHH
Q 019340 293 KAV 295 (342)
Q Consensus 293 ~A~ 295 (342)
++.
T Consensus 359 ~a~ 361 (370)
T 1ihg_A 359 DKE 361 (370)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 183
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.91 E-value=4.2e-10 Score=106.28 Aligned_cols=90 Identities=20% Similarity=0.135 Sum_probs=50.8
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhc
Q 019340 140 MVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLALCLHR 215 (342)
Q Consensus 140 ~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~ 215 (342)
++.+|.++...|++++|+.+|+++++. .++.+++++|.+|. ..+++++|+.+|+++++. .++.+++++|.+|..
T Consensus 9 ~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~--~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~ 86 (477)
T 1wao_1 9 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYL--RTECYGYALGDATRAIELDKKYIKGYYRRAASNMA 86 (477)
T ss_dssp SSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH--HhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 445555666666666666666666543 45566666666666 556666666666666553 345555555555544
Q ss_pred CCCCCCCHHHHHHHHHHHHH
Q 019340 216 GRGVDFNLQEAARWYLRAAE 235 (342)
Q Consensus 216 g~~~~~~~~~A~~~~~~A~~ 235 (342)
.+++++|+.+|+++++
T Consensus 87 ----~g~~~eA~~~~~~al~ 102 (477)
T 1wao_1 87 ----LGKFRAALRDYETVVK 102 (477)
T ss_dssp ----HTCHHHHHHHHHHHHH
T ss_pred ----cCCHHHHHHHHHHHHH
Confidence 3444444444444443
No 184
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.87 E-value=9.1e-08 Score=92.08 Aligned_cols=169 Identities=7% Similarity=-0.155 Sum_probs=142.2
Q ss_pred CCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCC----------HHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCc
Q 019340 119 KNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDK----------KEAAISLYRQAAVL--GDPAGQFNLGISYLQAQP 184 (342)
Q Consensus 119 ~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~----------~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~ 184 (342)
.-.++|++++.+++.. .+..+|+..+.++...++ +++++.++.++++. .+..+|++.+.++. ..
T Consensus 43 ~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~--~l 120 (567)
T 1dce_A 43 ELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLS--RL 120 (567)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH--TC
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH--Hc
Confidence 3457899999999986 488999999999988877 99999999999865 78999999999998 66
Q ss_pred c--CHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCCC-CHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCC---
Q 019340 185 A--NAEEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDF-NLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEG--- 254 (342)
Q Consensus 185 ~--~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~-~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g--- 254 (342)
+ ++++++.++.++++. .+..||+.-+.++.. .+ .++++++++.++++. .+..||++.|.++..-.+
T Consensus 121 ~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~----l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~ 196 (567)
T 1dce_A 121 PEPNWARELELCARFLEADERNFHCWDYRRFVAAQ----AAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPD 196 (567)
T ss_dssp SSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCC
T ss_pred ccccHHHHHHHHHHHHhhccccccHHHHHHHHHHH----cCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccc
Confidence 6 779999999999886 489999999999876 33 789999999999987 588999999999754100
Q ss_pred -------CcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhhcCCHHH
Q 019340 255 -------LPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMK 293 (342)
Q Consensus 255 -------~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~ 293 (342)
....++++++++.+|+.. ++..+++.++.++...+.+++
T Consensus 197 ~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 197 SGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 135789999999999875 678999999999988777554
No 185
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.81 E-value=4.7e-07 Score=81.11 Aligned_cols=218 Identities=8% Similarity=-0.124 Sum_probs=161.3
Q ss_pred CCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCC-CHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCc-c-CHHHHH
Q 019340 119 KNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMD-KKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQP-A-NAEEAV 191 (342)
Q Consensus 119 ~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~-~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~-~-~~~~A~ 191 (342)
...++|+.++.+++.. .+..+++..+.++...+ ++++++.++.+++.. .+..++...+.++. .. + ++++++
T Consensus 68 e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~--~l~~~~~~~EL 145 (349)
T 3q7a_A 68 EKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLD--RISPQDPVSEI 145 (349)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH--HHCCSCCHHHH
T ss_pred CCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH--HhcCCChHHHH
Confidence 3456799999999987 48999999999999988 699999999999965 78999999999998 44 4 789999
Q ss_pred HHHHHHHHc--CCHHHHHHHHHHHhcCCCC----CCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCC---CcccHH
Q 019340 192 KLLYQASIA--GHVRAQYQLALCLHRGRGV----DFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEG---LPLSHR 260 (342)
Q Consensus 192 ~~~~~a~~~--~~~~a~~~lg~~~~~g~~~----~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g---~~~~~~ 260 (342)
.++.++++. .+..+++.-+.++..-... .....+++.++.++++. .+..||++.+.++..-.+ ....++
T Consensus 146 ~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~ 225 (349)
T 3q7a_A 146 EYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQ 225 (349)
T ss_dssp HHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHHHH
Confidence 999999875 4889999888887541100 11234899999999986 588999999999854321 122378
Q ss_pred HHHHHHHHHHHc--CCHHHHHHHHHHhhhcCCH--------------------HHHHHHHHHHHH--------cCcHHHH
Q 019340 261 QARKWMKRAADC--GHGKAQLEHGLGLFTEGEM--------------------MKAVVYLELATR--------AGETAAD 310 (342)
Q Consensus 261 ~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~--------------------~~A~~~~~~a~~--------~~~~~a~ 310 (342)
+++.++++++.. ++..+++.+..++...|+. .+-.......+. .....+.
T Consensus 226 eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al 305 (349)
T 3q7a_A 226 DELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLAL 305 (349)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHH
Confidence 999999999876 7789998888888776643 222222222222 1345666
Q ss_pred HHHHHHHhhcChhcHHHHHHHHHhhh-cCCC
Q 019340 311 HVKNVILQQLSATSRDRAMLVVDSWR-AMPS 340 (342)
Q Consensus 311 ~~~~~~~~~~~~~~~~~a~~~~~~~~-~~~~ 340 (342)
..+.-++... ++.++|.++++.+. +..|
T Consensus 306 ~~l~d~~~~~--~~~~~a~~~~~~l~~~~dp 334 (349)
T 3q7a_A 306 EYLADSFIEQ--NRVDDAAKVFEKLSSEYDQ 334 (349)
T ss_dssp HHHHHHHHHT--TCHHHHHHHHHHHHHTTCG
T ss_pred HHHHHHHHhc--CCHHHHHHHHHHHHhhhCh
Confidence 6666666544 67788999888885 4444
No 186
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.80 E-value=1.7e-08 Score=79.56 Aligned_cols=81 Identities=14% Similarity=0.120 Sum_probs=62.4
Q ss_pred CCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCC----------HHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCc
Q 019340 119 KNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDK----------KEAAISLYRQAAVL--GDPAGQFNLGISYLQAQP 184 (342)
Q Consensus 119 ~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~----------~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~ 184 (342)
+.+++|+..|+++++. +++++++++|.++...++ +++|+..|++|++. ++++++++||.+|. ..
T Consensus 16 ~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~--~l 93 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYT--SF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH--HH
T ss_pred hHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH--Hh
Confidence 3567788888888875 478888888888877765 45888888888755 67888888888887 33
Q ss_pred -----------cCHHHHHHHHHHHHHcC
Q 019340 185 -----------ANAEEAVKLLYQASIAG 201 (342)
Q Consensus 185 -----------~~~~~A~~~~~~a~~~~ 201 (342)
+++++|+.+|++|++.+
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 47888888888887653
No 187
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.77 E-value=1.3e-07 Score=83.10 Aligned_cols=174 Identities=7% Similarity=-0.105 Sum_probs=130.0
Q ss_pred HHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC----CCHHHHHHHHHHHHcCCccCHHHHHHHHHHH
Q 019340 124 ALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL----GDPAGQFNLGISYLQAQPANAEEAVKLLYQA 197 (342)
Q Consensus 124 A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a 197 (342)
|+..|++.+.. .+..+.+.+|.++...|++++|+.++.+.+.. ++.+++..++.++. ..++++.|.+.+++.
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L--~~~r~d~A~k~l~~~ 162 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVAL--LNNNVSTASTIFDNY 162 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHH--HTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHH--HCCCHHHHHHHHHHH
Confidence 77888887764 46667789999999999999999999999876 46788888999999 888999999999987
Q ss_pred HHcCC------HHHHHHHHHH--HhcCCCCCCCHHHHHHHHHHHHHCCC----HHHHHHHHHHHHcCCCCcccHHHHHHH
Q 019340 198 SIAGH------VRAQYQLALC--LHRGRGVDFNLQEAARWYLRAAEGGY----VRAMYNTSLCYSFGEGLPLSHRQARKW 265 (342)
Q Consensus 198 ~~~~~------~~a~~~lg~~--~~~g~~~~~~~~~A~~~~~~A~~~~~----~~a~~~lg~~y~~g~g~~~~~~~A~~~ 265 (342)
.+... -....+|+.. ....+ ..++.+|+..|+++.+... +...++ ++.. .| ++++|...
T Consensus 163 ~~~~~d~~~~~d~~l~~Laea~v~l~~g--~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~-~g---~~~eAe~~ 233 (310)
T 3mv2_B 163 TNAIEDTVSGDNEMILNLAESYIKFATN--KETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQ-QR---NIAEAQGI 233 (310)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHHHHHHT--CSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHH-HT---CHHHHHHH
T ss_pred HhcCccccccchHHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHH-cC---CHHHHHHH
Confidence 66543 3445555533 32211 2368899999999877632 334444 4533 23 99999999
Q ss_pred HHHHHH------------cCCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCcHHHH
Q 019340 266 MKRAAD------------CGHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAAD 310 (342)
Q Consensus 266 ~~~a~~------------~~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~ 310 (342)
++...+ .+++.++.|+..+....|+ +|.++++++....|.++.
T Consensus 234 L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~ 288 (310)
T 3mv2_B 234 VELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAF 288 (310)
T ss_dssp HHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHH
T ss_pred HHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChH
Confidence 986543 4578888898888888887 899999999988765544
No 188
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.75 E-value=6.3e-09 Score=76.73 Aligned_cols=76 Identities=9% Similarity=0.069 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CC------HH
Q 019340 101 AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GD------PA 170 (342)
Q Consensus 101 a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~------~~ 170 (342)
+.+++.+|.++.. .+++++|+.+|+++++. +++.+++++|.+|...|++++|+.+|+++++. ++ ..
T Consensus 4 ~~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 79 (111)
T 2l6j_A 4 FEKQKEQGNSLFK----QGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHT----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHH
T ss_pred HHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHH
Confidence 4556666666666 36666666666666664 35666666666666666666666666666654 33 55
Q ss_pred HHHHHHHHHH
Q 019340 171 GQFNLGISYL 180 (342)
Q Consensus 171 a~~~Lg~~~~ 180 (342)
+++.+|.++.
T Consensus 80 ~~~~~~~~~~ 89 (111)
T 2l6j_A 80 LQYRLELAQG 89 (111)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5666666655
No 189
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.74 E-value=3e-08 Score=78.21 Aligned_cols=54 Identities=11% Similarity=-0.023 Sum_probs=40.6
Q ss_pred cHHHHHHHHHHHHHc--CCHHHHHHHHHHhhhcC-----------CHHHHHHHHHHHHHcCcHHHHH
Q 019340 258 SHRQARKWMKRAADC--GHGKAQLEHGLGLFTEG-----------EMMKAVVYLELATRAGETAADH 311 (342)
Q Consensus 258 ~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~-----------~~~~A~~~~~~a~~~~~~~a~~ 311 (342)
.+++|+..|++|++. ++..++++||.+|...| ++++|+.+|++|+++++.+..+
T Consensus 61 ~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y 127 (158)
T 1zu2_A 61 MIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHY 127 (158)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHH
Confidence 466888888888776 45777888888887764 7888888888888887665544
No 190
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.73 E-value=6.7e-07 Score=87.53 Aligned_cols=211 Identities=9% Similarity=-0.052 Sum_probs=146.3
Q ss_pred HHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHH-HHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHH
Q 019340 122 DKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAI-SLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQ 196 (342)
Q Consensus 122 ~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~-~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~ 196 (342)
+.....|++|+.. .+++.|+..+..+...|+.++|+ ..|++|+.. .+...+..++.+.. ..+++++|...|++
T Consensus 326 ~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee--~~~~~e~aR~iyek 403 (679)
T 4e6h_A 326 ARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYE--LNTKIPEIETTILS 403 (679)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHH--HTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH--HhCCHHHHHHHHHH
Confidence 3456788888875 47889999999888888888997 999998865 44555566666666 67789999999998
Q ss_pred HHHcC------------------------CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC-C--CHHHHHHHHHHH
Q 019340 197 ASIAG------------------------HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG-G--YVRAMYNTSLCY 249 (342)
Q Consensus 197 a~~~~------------------------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~-~--~~~a~~~lg~~y 249 (342)
+++.. .+.++...+.+... .++.+.|...|.+|.+. . ....+...+.+-
T Consensus 404 ~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR----~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE 479 (679)
T 4e6h_A 404 CIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKR----IQGLAASRKIFGKCRRLKKLVTPDIYLENAYIE 479 (679)
T ss_dssp HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHH----HHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 87631 12345555555544 45688999999999876 3 345555555554
Q ss_pred HcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCcH--HH-HHHHHHHHhhcChhc
Q 019340 250 SFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGET--AA-DHVKNVILQQLSATS 324 (342)
Q Consensus 250 ~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~--~a-~~~~~~~~~~~~~~~ 324 (342)
.... ++.+.|...|+++++. .++..+...+......|+.+.|..+|++|+...++ .. ......+.-....|+
T Consensus 480 ~~~~---~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~ 556 (679)
T 4e6h_A 480 YHIS---KDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGS 556 (679)
T ss_dssp HTTT---SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCC
T ss_pred HHhC---CCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCC
Confidence 3322 2689999999999886 55666667777777789999999999999987652 22 122222222233466
Q ss_pred HHHHHHHHHhhhcCCCC
Q 019340 325 RDRAMLVVDSWRAMPSL 341 (342)
Q Consensus 325 ~~~a~~~~~~~~~~~~~ 341 (342)
.+.++.+.++.....|.
T Consensus 557 ~~~~~~v~~R~~~~~P~ 573 (679)
T 4e6h_A 557 LNSVRTLEKRFFEKFPE 573 (679)
T ss_dssp SHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHhCCC
Confidence 77788888777665553
No 191
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.73 E-value=4.6e-08 Score=73.35 Aligned_cols=82 Identities=13% Similarity=0.082 Sum_probs=61.1
Q ss_pred CCCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhhcCCHH
Q 019340 220 DFNLQEAARWYLRAAEGG-----YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMM 292 (342)
Q Consensus 220 ~~~~~~A~~~~~~A~~~~-----~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~ 292 (342)
.+++++|+.+|+++++.+ ++.+++++|.+|.. .+++++|+.+|+++++. +++.+++++|.++...|+++
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 78 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRT----LGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYE 78 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHH
Confidence 356677777777777663 35677888888854 22888888888888775 56788888898888889999
Q ss_pred HHHHHHHHHHHcC
Q 019340 293 KAVVYLELATRAG 305 (342)
Q Consensus 293 ~A~~~~~~a~~~~ 305 (342)
+|+.+|+++++..
T Consensus 79 ~A~~~~~~al~~~ 91 (117)
T 3k9i_A 79 QGVELLLKIIAET 91 (117)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC
Confidence 9999998888774
No 192
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.71 E-value=2.3e-07 Score=69.10 Aligned_cols=88 Identities=17% Similarity=0.104 Sum_probs=66.3
Q ss_pred HHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHH
Q 019340 123 KALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQAS 198 (342)
Q Consensus 123 ~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~ 198 (342)
+|+..|+++++. +++.+++.+|.+|...|++++|+.+|+++++. .++.+++++|.+|. ..+++++|+.+|++++
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~--~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQ--GQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH--HHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH--HcCCHHHHHHHHHHHH
Confidence 477788888775 47788888888888888888888888888754 66788888888888 7788888888888876
Q ss_pred Hc----CCHHHHHHHHHH
Q 019340 199 IA----GHVRAQYQLALC 212 (342)
Q Consensus 199 ~~----~~~~a~~~lg~~ 212 (342)
+. ++..+...+...
T Consensus 81 ~~~~~~~~~~~~~~l~~~ 98 (115)
T 2kat_A 81 AAAQSRGDQQVVKELQVF 98 (115)
T ss_dssp HHHHHHTCHHHHHHHHHH
T ss_pred HhccccccHHHHHHHHHH
Confidence 53 344444444433
No 193
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.70 E-value=1.7e-07 Score=66.21 Aligned_cols=73 Identities=23% Similarity=0.368 Sum_probs=32.3
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHH
Q 019340 139 AMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLALCL 213 (342)
Q Consensus 139 a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~ 213 (342)
+++.+|.++...|++++|+.+|+++++. +++.+++++|.++. ..+++++|+.+|+++++. +++.++.++|.++
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~--~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY--KQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH--HHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 3444444444444444444444444332 33444444444444 444444444444444332 3444444444443
No 194
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.66 E-value=5.4e-07 Score=86.70 Aligned_cols=163 Identities=8% Similarity=-0.129 Sum_probs=135.7
Q ss_pred HhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCC----------HHHHHHHHHHHHhC--CCHHHHHHHHHHHhc
Q 019340 82 RAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKN----------LDKALDSFLKGAAR--GSTLAMVDAGLMYWE 149 (342)
Q Consensus 82 ~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~----------~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~ 149 (342)
.+|...+...+..-++ +..+++.-|.++.. .++ +++++.++.++++. .+..+|++.+.++..
T Consensus 46 eeal~~~~~~l~~nP~--~~taW~~R~~~l~~----l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~ 119 (567)
T 1dce_A 46 ESVLELTSQILGANPD--FATLWNCRREVLQH----LETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSR 119 (567)
T ss_dssp HHHHHHHHHHHHHCTT--CHHHHHHHHHHHHH----HHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCch--hHHHHHHHHHHHHh----cccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 3667777777777655 78888888988877 233 89999999999986 489999999999999
Q ss_pred CC--CHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCcc-CHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcC-CC---
Q 019340 150 MD--KKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPA-NAEEAVKLLYQASIA--GHVRAQYQLALCLHRG-RG--- 218 (342)
Q Consensus 150 ~~--~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~-~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g-~~--- 218 (342)
.+ ++++++.++.++++. .+..||.+.+.+.. ..+ .++++++++.++++. .+..||++.|.++..- ..
T Consensus 120 l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~--~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~ 197 (567)
T 1dce_A 120 LPEPNWARELELCARFLEADERNFHCWDYRRFVAA--QAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDS 197 (567)
T ss_dssp CSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH--HTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCS
T ss_pred cccccHHHHHHHHHHHHhhccccccHHHHHHHHHH--HcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccc
Confidence 99 779999999999866 78999999999988 666 899999999999875 5899999999987641 10
Q ss_pred ------CCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcC
Q 019340 219 ------VDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFG 252 (342)
Q Consensus 219 ------~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g 252 (342)
....++++++++.+|+.. ++..+|++++.++..+
T Consensus 198 ~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~ 239 (567)
T 1dce_A 198 GPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRA 239 (567)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCC
T ss_pred cccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcC
Confidence 124589999999999975 6889999999999653
No 195
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.65 E-value=2.6e-07 Score=65.20 Aligned_cols=77 Identities=21% Similarity=0.334 Sum_probs=70.1
Q ss_pred CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHH
Q 019340 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNL 175 (342)
Q Consensus 100 ~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~L 175 (342)
.+.+++.+|.++.. .+++++|+.+|+++++. +++.+++.+|.++...|++++|+.+|+++++. +++.++.++
T Consensus 8 ~~~~~~~la~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l 83 (91)
T 1na3_A 8 SAEAWYNLGNAYYK----QGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNL 83 (91)
T ss_dssp HHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHH----ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 46788999999988 58999999999999986 58899999999999999999999999999865 789999999
Q ss_pred HHHHH
Q 019340 176 GISYL 180 (342)
Q Consensus 176 g~~~~ 180 (342)
|.++.
T Consensus 84 ~~~~~ 88 (91)
T 1na3_A 84 GNAKQ 88 (91)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99986
No 196
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.62 E-value=3.1e-07 Score=67.38 Aligned_cols=78 Identities=17% Similarity=0.198 Sum_probs=61.5
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--CC------HHH
Q 019340 136 STLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA--GH------VRA 205 (342)
Q Consensus 136 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~------~~a 205 (342)
++.+++.+|.++...|++++|+.+|+++++. .++.+++++|.++. ..+++++|+.+|+++++. ++ ..+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~--~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 80 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALI--KLGEYTQAIQMCQQGLRYTSTAEHVAIRSKL 80 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH--HTTCHHHHHHHHHHHHTSCSSTTSHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH--HhcCHHHHHHHHHHHHHhCCCccHHHHHHHH
Confidence 3567788888888888888888888888754 67888888888888 788888888888888774 34 667
Q ss_pred HHHHHHHHhc
Q 019340 206 QYQLALCLHR 215 (342)
Q Consensus 206 ~~~lg~~~~~ 215 (342)
++.+|.++..
T Consensus 81 ~~~~~~~~~~ 90 (111)
T 2l6j_A 81 QYRLELAQGA 90 (111)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777777753
No 197
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.60 E-value=3.3e-07 Score=66.68 Aligned_cols=61 Identities=18% Similarity=0.248 Sum_probs=32.6
Q ss_pred CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 019340 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAA 164 (342)
Q Consensus 100 ~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~ 164 (342)
++.+++.+|.+|.. .+++++|+.+|+++++. +++.+++.+|.+|...|++++|+.+|++++
T Consensus 6 ~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 6 DPFTRYALAQEHLK----HDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp CHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44555555555555 35555555555555553 244555555555555555555555555554
No 198
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.60 E-value=3.5e-07 Score=66.51 Aligned_cols=78 Identities=13% Similarity=0.126 Sum_probs=58.5
Q ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc----CCHHHHHH
Q 019340 135 GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA----GHVRAQYQ 208 (342)
Q Consensus 135 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~ 208 (342)
+++.+++.+|.+|...|++++|+.+|+++++. +++.+++++|.+|. ..+++++|+.+|+++++. ++..+...
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~--~~g~~~~A~~~~~~al~l~~~~~~~~~~~~ 82 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYE--RLDRTDDAIDTYAQGIEVAREEGTQKDLSE 82 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH--HcCCHHHHHHHHHHHHhhhhcCCchhHHHH
Confidence 56778888888888888888888888888754 66788888888888 778888888888887753 45555555
Q ss_pred HHHHHh
Q 019340 209 LALCLH 214 (342)
Q Consensus 209 lg~~~~ 214 (342)
+..++.
T Consensus 83 l~~~l~ 88 (100)
T 3ma5_A 83 LQDAKL 88 (100)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555554
No 199
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.56 E-value=1e-06 Score=65.43 Aligned_cols=76 Identities=16% Similarity=0.026 Sum_probs=60.0
Q ss_pred HHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHH
Q 019340 155 AAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWY 230 (342)
Q Consensus 155 ~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~ 230 (342)
+|+..|+++++. +++.+++++|.+|. ..+++++|+.+|+++++. .++.+++++|.+|.. .+++++|+.+|
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~--~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~ 76 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYA--EHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQG----QGDRAGARQAW 76 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HTCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHH--HccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH----cCCHHHHHHHH
Confidence 577788888754 67888888888888 778888888888888764 577888888888876 66788888888
Q ss_pred HHHHHC
Q 019340 231 LRAAEG 236 (342)
Q Consensus 231 ~~A~~~ 236 (342)
+++++.
T Consensus 77 ~~al~~ 82 (115)
T 2kat_A 77 ESGLAA 82 (115)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 887753
No 200
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.47 E-value=1.3e-06 Score=82.38 Aligned_cols=110 Identities=8% Similarity=-0.007 Sum_probs=67.9
Q ss_pred cCCHHHHHHHHHHHHhC-------CCH---HHHHHHHHHHhcCCCHHHHHHHHHHHHhC-------CCH---HHHHHHHH
Q 019340 118 RKNLDKALDSFLKGAAR-------GST---LAMVDAGLMYWEMDKKEAAISLYRQAAVL-------GDP---AGQFNLGI 177 (342)
Q Consensus 118 ~~~~~~A~~~~~~A~~~-------~~~---~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-------~~~---~a~~~Lg~ 177 (342)
.+++++|+.+|+++++. +|+ .++.+||.+|...|++++|+.+++++++. ++| ..+.+||.
T Consensus 322 qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 401 (490)
T 3n71_A 322 EGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGL 401 (490)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 36777777777777653 233 34567777777777777777777777632 333 45667777
Q ss_pred HHHcCCccCHHHHHHHHHHHHH-------cCCH---HHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Q 019340 178 SYLQAQPANAEEAVKLLYQASI-------AGHV---RAQYQLALCLHRGRGVDFNLQEAARWYLRA 233 (342)
Q Consensus 178 ~~~~g~~~~~~~A~~~~~~a~~-------~~~~---~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A 233 (342)
+|. ..|++++|+.+|++|++ +++| +...+|+.++.. .+.+++|...|.++
T Consensus 402 ~~~--~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e----~~~~~~ae~~~~~~ 461 (490)
T 3n71_A 402 TNW--HAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEME----LRMFRQNEFMYHKM 461 (490)
T ss_dssp HHH--HTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
T ss_pred HHH--HCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 777 66777777777777654 2233 333455555544 33455555555554
No 201
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.42 E-value=4e-05 Score=75.00 Aligned_cols=210 Identities=5% Similarity=-0.157 Sum_probs=154.8
Q ss_pred hhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHH-HHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHH
Q 019340 83 AASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKAL-DSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISL 159 (342)
Q Consensus 83 ~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~-~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~ 159 (342)
+...++.+.+...+. .+..++..+..+.. .++.++|. ..|++|+.. .+...++..+.+....|++++|...
T Consensus 327 Rv~~~Ye~aL~~~p~--~~~lW~~ya~~~~~----~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~i 400 (679)
T 4e6h_A 327 RMTYVYMQAAQHVCF--APEIWFNMANYQGE----KNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETT 400 (679)
T ss_dssp HHHHHHHHHHHHTTT--CHHHHHHHHHHHHH----HSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHcCC--CHHHHHHHHHHHHh----cCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 445566777776655 77888888888777 35677897 999999985 3666778899999999999999999
Q ss_pred HHHHHhCC------------------------CHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc-C--CHHHHHHHHHH
Q 019340 160 YRQAAVLG------------------------DPAGQFNLGISYLQAQPANAEEAVKLLYQASIA-G--HVRAQYQLALC 212 (342)
Q Consensus 160 ~~~a~~~~------------------------~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~-~--~~~a~~~lg~~ 212 (342)
|+++++.. .+..|...+.+.. ..++.+.|...|.+|++. . ....+...+.+
T Consensus 401 yek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~er--R~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~l 478 (679)
T 4e6h_A 401 ILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMK--RIQGLAASRKIFGKCRRLKKLVTPDIYLENAYI 478 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHH--HHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 99998631 1234555555544 567899999999999986 3 45666666666
Q ss_pred HhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCC-----HHHHHHHHHHh
Q 019340 213 LHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGH-----GKAQLEHGLGL 285 (342)
Q Consensus 213 ~~~g~~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~-----~~a~~~Lg~~~ 285 (342)
-.. ..++.+.|...|+++++. .++..+...+.+... . .+.+.|..+|++|+.... ...+......-
T Consensus 479 E~~---~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~-~---~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE 551 (679)
T 4e6h_A 479 EYH---ISKDTKTACKVLELGLKYFATDGEYINKYLDFLIY-V---NEESQVKSLFESSIDKISDSHLLKMIFQKVIFFE 551 (679)
T ss_dssp HHT---TTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-H---TCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHH
T ss_pred HHH---hCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHh-C---CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 544 134689999999999986 566665555554432 2 389999999999998643 23444555555
Q ss_pred hhcCCHHHHHHHHHHHHHcCcH
Q 019340 286 FTEGEMMKAVVYLELATRAGET 307 (342)
Q Consensus 286 ~~~~~~~~A~~~~~~a~~~~~~ 307 (342)
...|+.+.+...++++.+.-|.
T Consensus 552 ~~~G~~~~~~~v~~R~~~~~P~ 573 (679)
T 4e6h_A 552 SKVGSLNSVRTLEKRFFEKFPE 573 (679)
T ss_dssp HHTCCSHHHHHHHHHHHHHSTT
T ss_pred HHcCCHHHHHHHHHHHHHhCCC
Confidence 6689999999999999987654
No 202
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.35 E-value=7.7e-06 Score=77.02 Aligned_cols=126 Identities=7% Similarity=-0.152 Sum_probs=70.7
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHhC-------CCH---HHHHHHHHHHHcCCccCHHHHHHHHHHHHHc-------CCH--
Q 019340 143 AGLMYWEMDKKEAAISLYRQAAVL-------GDP---AGQFNLGISYLQAQPANAEEAVKLLYQASIA-------GHV-- 203 (342)
Q Consensus 143 lg~~~~~~~~~~~A~~~~~~a~~~-------~~~---~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~-------~~~-- 203 (342)
.+..+...|++++|+.+|+++++. +++ ..+.+||.+|. ..|++++|+.+++++++. ++|
T Consensus 315 ~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~--~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~ 392 (490)
T 3n71_A 315 KIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLS--YLQAYEEASHYARRMVDGYMKLYHHNNAQL 392 (490)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHSCTTCHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH--HhcCHHHHHHHHHHHHHHHHHHcCCCCHHH
Confidence 334455677777777777777642 233 46667777777 677777777777776541 222
Q ss_pred -HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCCH---HHHH
Q 019340 204 -RAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHG---KAQL 279 (342)
Q Consensus 204 -~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~---~a~~ 279 (342)
..+++||.+|.. .+++++|+.+|++|++. +++..-.+|+ +...
T Consensus 393 a~~l~nLa~~~~~----~G~~~eA~~~~~~Al~i-----------------------------~~~~lG~~Hp~~~~~~~ 439 (490)
T 3n71_A 393 GMAVMRAGLTNWH----AGHIEVGHGMICKAYAI-----------------------------LLVTHGPSHPITKDLEA 439 (490)
T ss_dssp HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH-----------------------------HHHHTCTTSHHHHHHHH
T ss_pred HHHHHHHHHHHHH----CCCHHHHHHHHHHHHHH-----------------------------HHHHhCCCChHHHHHHH
Confidence 234455555544 33444444444444321 0000001232 3345
Q ss_pred HHHHHhhhcCCHHHHHHHHHHHHH
Q 019340 280 EHGLGLFTEGEMMKAVVYLELATR 303 (342)
Q Consensus 280 ~Lg~~~~~~~~~~~A~~~~~~a~~ 303 (342)
+|+.++...+.+++|...|+++.+
T Consensus 440 ~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 440 MRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777777777777777777643
No 203
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.34 E-value=5e-06 Score=60.91 Aligned_cols=71 Identities=15% Similarity=0.025 Sum_probs=36.6
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHhC---------CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHH--cCCHHHH
Q 019340 138 LAMVDAGLMYWEMDKKEAAISLYRQAAVL---------GDPAGQFNLGISYLQAQPANAEEAVKLLYQASI--AGHVRAQ 206 (342)
Q Consensus 138 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---------~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~--~~~~~a~ 206 (342)
.-++.||..+...+++..|+.||++|++. ..++.+.+||.+|. ..|++++|+.+++++++ ++++.+.
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~--~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVY--QQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHH--HccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 34455555555555555555555555532 12445555555555 55555555555555543 3345555
Q ss_pred HHHH
Q 019340 207 YQLA 210 (342)
Q Consensus 207 ~~lg 210 (342)
.+++
T Consensus 84 ~n~~ 87 (104)
T 2v5f_A 84 GNLK 87 (104)
T ss_dssp HHHH
T ss_pred hhHH
Confidence 5544
No 204
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.24 E-value=9.5e-06 Score=59.38 Aligned_cols=73 Identities=11% Similarity=0.005 Sum_probs=64.2
Q ss_pred CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC---------CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CC
Q 019340 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR---------GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GD 168 (342)
Q Consensus 100 ~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~---------~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~ 168 (342)
.+.-++.||..+.. .+++..|+.||++|++. ..+..+..||.+|...|++++|+.+++++++. ++
T Consensus 4 sa~dc~~lG~~~~~----~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~ 79 (104)
T 2v5f_A 4 TAEDCFELGKVAYT----EADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEH 79 (104)
T ss_dssp CHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred CHHHHHHHHHHHHH----ccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC
Confidence 46778999999999 69999999999999984 24678899999999999999999999999754 78
Q ss_pred HHHHHHHH
Q 019340 169 PAGQFNLG 176 (342)
Q Consensus 169 ~~a~~~Lg 176 (342)
+.+..+++
T Consensus 80 ~~~~~n~~ 87 (104)
T 2v5f_A 80 QRANGNLK 87 (104)
T ss_dssp HHHHHHHH
T ss_pred HHHHhhHH
Confidence 88888887
No 205
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.24 E-value=3.4e-05 Score=69.15 Aligned_cols=163 Identities=13% Similarity=0.008 Sum_probs=89.6
Q ss_pred cHHHHHHHHhhCCChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHH
Q 019340 65 PFDVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVD 142 (342)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~ 142 (342)
..++...+...+...-. ++ .........+...++.-+|.-|.-+... +...+..+|+.+|++|++. +++.++..
T Consensus 163 Qdei~~~I~~aL~~~l~-~~--e~~r~~~~~p~~~~Aydl~Lra~~~l~~-~~~~~~~~A~~l~e~Al~lDP~~a~A~A~ 238 (372)
T 3ly7_A 163 QNDLLESLSKALNQPWP-QR--MQETLQKILPHRGALLTNFYQAHDYLLH-GDDKSLNRASELLGEIVQSSPEFTYARAE 238 (372)
T ss_dssp HHHHHHHHHHHTTCCCC-HH--HHHHHHHHSCSSGGGHHHHHHHHHHHHH-CSHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHhCchhh-HH--HHHHHhccCCCCHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 44455555554443221 11 1123445556656677777777776652 3456678899999998876 46777777
Q ss_pred HHHHHhcC---C--C---HHHHHHHHHHHH----hCCCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHcC-CHHHHHHH
Q 019340 143 AGLMYWEM---D--K---KEAAISLYRQAA----VLGDPAGQFNLGISYLQAQPANAEEAVKLLYQASIAG-HVRAQYQL 209 (342)
Q Consensus 143 lg~~~~~~---~--~---~~~A~~~~~~a~----~~~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~~-~~~a~~~l 209 (342)
++.+|... + . .......++.+. ...++.++.-++.++. ..+++++|+.++++++..+ +..++..+
T Consensus 239 la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l--~~gd~d~A~~~l~rAl~Ln~s~~a~~ll 316 (372)
T 3ly7_A 239 KALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSAL--VKGKTDESYQAINTGIDLEMSWLNYVLL 316 (372)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHH--HHTCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHH--hCCCHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 77776421 0 0 111111122111 1245555555555555 4566666666666666654 33444555
Q ss_pred HHHHhcCCCCCCCHHHHHHHHHHHHHCC
Q 019340 210 ALCLHRGRGVDFNLQEAARWYLRAAEGG 237 (342)
Q Consensus 210 g~~~~~g~~~~~~~~~A~~~~~~A~~~~ 237 (342)
|.++.. .++.++|++.|.+|+..+
T Consensus 317 G~~~~~----~G~~~eA~e~~~~AlrL~ 340 (372)
T 3ly7_A 317 GKVYEM----KGMNREAADAYLTAFNLR 340 (372)
T ss_dssp HHHHHH----TTCHHHHHHHHHHHHHHS
T ss_pred HHHHHH----CCCHHHHHHHHHHHHhcC
Confidence 666654 556666666666666553
No 206
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.15 E-value=4.2e-05 Score=59.57 Aligned_cols=98 Identities=11% Similarity=0.130 Sum_probs=79.2
Q ss_pred CHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcC----CHHHHHHHHHHhhhcCCHHHHH
Q 019340 222 NLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCG----HGKAQLEHGLGLFTEGEMMKAV 295 (342)
Q Consensus 222 ~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~~~~~~~~~~A~ 295 (342)
....+.+.|.+.... .+.++.+++|+++.... .+.+.++++..|+..++.+ +.+++|+||..|+..+++++|+
T Consensus 13 ~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~-~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSK-YNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHH
Confidence 456777888887774 47889999999997633 3668889999999999876 3678999999999999999999
Q ss_pred HHHHHHHHcCc--HHHHHHHHHHHhhc
Q 019340 296 VYLELATRAGE--TAADHVKNVILQQL 320 (342)
Q Consensus 296 ~~~~~a~~~~~--~~a~~~~~~~~~~~ 320 (342)
.|++++++..| ..|......+...+
T Consensus 92 ~y~~~lL~ieP~n~QA~~Lk~~ie~~~ 118 (152)
T 1pc2_A 92 KYVRGLLQTEPQNNQAKELERLIDKAM 118 (152)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 99999999865 66776666655443
No 207
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.14 E-value=5.1e-06 Score=59.64 Aligned_cols=63 Identities=13% Similarity=-0.060 Sum_probs=46.5
Q ss_pred HHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHH-HHHHHHHHhhhcCCHHHHHHHHHHHHHcCcHHH
Q 019340 243 YNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGK-AQLEHGLGLFTEGEMMKAVVYLELATRAGETAA 309 (342)
Q Consensus 243 ~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~-a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~~a 309 (342)
+..|.++.. .+++++|+.+|+++++. .++. +++++|.+|...|++++|+.+|+++++.++.+.
T Consensus 4 ~~~a~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~ 69 (99)
T 2kc7_A 4 LKTIKELIN----QGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSP 69 (99)
T ss_dssp HHHHHHHHH----HTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTST
T ss_pred HHHHHHHHH----cCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH
Confidence 445666643 33788888888888775 4567 888888888888888888888888888765443
No 208
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.13 E-value=0.00012 Score=65.71 Aligned_cols=125 Identities=11% Similarity=-0.090 Sum_probs=83.9
Q ss_pred CCccCHHHHHHHHHHHHH--cCCHHHHHHHHHHHhc--CCC-CCCCHHHHH-HHHHHHHH----CCCHHHHHHHHHHHHc
Q 019340 182 AQPANAEEAVKLLYQASI--AGHVRAQYQLALCLHR--GRG-VDFNLQEAA-RWYLRAAE----GGYVRAMYNTSLCYSF 251 (342)
Q Consensus 182 g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~--g~~-~~~~~~~A~-~~~~~A~~----~~~~~a~~~lg~~y~~ 251 (342)
+...+..+|+.+|+++++ ++++.++..++.+|.. +.+ ...+...++ ..+..+.. ..++.++..++.++..
T Consensus 210 ~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~ 289 (372)
T 3ly7_A 210 GDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALV 289 (372)
T ss_dssp CSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHh
Confidence 345566788888888765 4577777777776641 111 111111221 12222111 2467777777776643
Q ss_pred CCCCcccHHHHHHHHHHHHHcC-CHHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCcHHHH
Q 019340 252 GEGLPLSHRQARKWMKRAADCG-HGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAAD 310 (342)
Q Consensus 252 g~g~~~~~~~A~~~~~~a~~~~-~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~ 310 (342)
..++++|+.++++|+..+ +..++..+|.++.-.|++++|...|++|++++|...-
T Consensus 290 ----~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t 345 (372)
T 3ly7_A 290 ----KGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANT 345 (372)
T ss_dssp ----HTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHH
T ss_pred ----CCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcCh
Confidence 239999999999999874 4566778999999999999999999999999876643
No 209
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.11 E-value=1.3e-05 Score=57.45 Aligned_cols=56 Identities=11% Similarity=0.015 Sum_probs=30.0
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHhC--CCHH-HHHHHHHHHHcCCccCHHHHHHHHHHHHH
Q 019340 142 DAGLMYWEMDKKEAAISLYRQAAVL--GDPA-GQFNLGISYLQAQPANAEEAVKLLYQASI 199 (342)
Q Consensus 142 ~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~-a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~ 199 (342)
..|.++...|++++|+..|+++++. .++. +++++|.+|. ..+++++|+.+|+++++
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~--~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYR--KLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHH--HHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH--HcCCHHHHHHHHHHHHh
Confidence 4455555555555555555555433 3445 5555555555 45555555555555544
No 210
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.03 E-value=1.5e-05 Score=73.85 Aligned_cols=80 Identities=18% Similarity=0.060 Sum_probs=64.9
Q ss_pred cCCHHHHHHHHHHHHhC-----C--CH---HHHHHHHHHHhcCCCHHHHHHHHHHHHhC-------CCH---HHHHHHHH
Q 019340 118 RKNLDKALDSFLKGAAR-----G--ST---LAMVDAGLMYWEMDKKEAAISLYRQAAVL-------GDP---AGQFNLGI 177 (342)
Q Consensus 118 ~~~~~~A~~~~~~A~~~-----~--~~---~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-------~~~---~a~~~Lg~ 177 (342)
.+++++|+.+|+++++. | |+ .++.+||.+|...|++++|+.+|+++++. ++| ..+++||.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 46899999999998873 2 43 45778999999999999999999998742 344 47888999
Q ss_pred HHHcCCccCHHHHHHHHHHHHH
Q 019340 178 SYLQAQPANAEEAVKLLYQASI 199 (342)
Q Consensus 178 ~~~~g~~~~~~~A~~~~~~a~~ 199 (342)
+|. ..|++++|+.+|++|++
T Consensus 391 ~~~--~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYM--GLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHH--HTTCHHHHHHHHHHHHH
T ss_pred HHH--hccCHHHHHHHHHHHHH
Confidence 998 88899999999998875
No 211
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.00 E-value=5.3e-05 Score=65.33 Aligned_cols=81 Identities=11% Similarity=-0.031 Sum_probs=40.9
Q ss_pred CHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcC----CCCcccHHHHHHHHHHHHHcC---CHHHHHHHHHHhhh-cC
Q 019340 222 NLQEAARWYLRAAEGG----YVRAMYNTSLCYSFG----EGLPLSHRQARKWMKRAADCG---HGKAQLEHGLGLFT-EG 289 (342)
Q Consensus 222 ~~~~A~~~~~~A~~~~----~~~a~~~lg~~y~~g----~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~~~~-~~ 289 (342)
...+|...+++|++.+ +..++..||.+|..- .| +.++|..+|++|++.+ +..+.+.+|..+.. .+
T Consensus 178 ~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gG---d~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~g 254 (301)
T 3u64_A 178 TVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGG---GMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLN 254 (301)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTC---CHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTT
T ss_pred hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCC---CHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcC
Confidence 3444444444444432 223455555555331 22 5666666666665542 24555555555544 35
Q ss_pred CHHHHHHHHHHHHHcC
Q 019340 290 EMMKAVVYLELATRAG 305 (342)
Q Consensus 290 ~~~~A~~~~~~a~~~~ 305 (342)
++++|..++++|+...
T Consensus 255 d~~~a~~~L~kAL~a~ 270 (301)
T 3u64_A 255 NRAGFDEALDRALAID 270 (301)
T ss_dssp CHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHcCC
Confidence 6666666666665543
No 212
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.95 E-value=0.00015 Score=56.46 Aligned_cols=87 Identities=17% Similarity=0.088 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCC---CHHHHHHHHHHHHhCC----CHHHHHHHHHHHHcCCccCHHHHH
Q 019340 121 LDKALDSFLKGAARG--STLAMVDAGLMYWEMD---KKEAAISLYRQAAVLG----DPAGQFNLGISYLQAQPANAEEAV 191 (342)
Q Consensus 121 ~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~---~~~~A~~~~~~a~~~~----~~~a~~~Lg~~~~~g~~~~~~~A~ 191 (342)
...+.+.|.+..+.+ +.++.+++|.++...+ +.++++..++..++.+ +.+++|+||..|+ ..+++++|+
T Consensus 14 l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~--kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY--RLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH--HTSCHHHHH
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHH--HccCHHHHH
Confidence 444555566655533 5666777777776665 5557777777766554 2467777777776 666777777
Q ss_pred HHHHHHHH--cCCHHHHHHH
Q 019340 192 KLLYQASI--AGHVRAQYQL 209 (342)
Q Consensus 192 ~~~~~a~~--~~~~~a~~~l 209 (342)
++++++++ +++..|..-.
T Consensus 92 ~y~~~lL~ieP~n~QA~~Lk 111 (152)
T 1pc2_A 92 KYVRGLLQTEPQNNQAKELE 111 (152)
T ss_dssp HHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHH
Confidence 77777655 3455554433
No 213
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.91 E-value=7.2e-05 Score=69.25 Aligned_cols=79 Identities=14% Similarity=-0.037 Sum_probs=61.5
Q ss_pred CCHHHHHHHHHHHHhC-------CCH---HHHHHHHHHHhcCCCHHHHHHHHHHHHhC-------CCH---HHHHHHHHH
Q 019340 119 KNLDKALDSFLKGAAR-------GST---LAMVDAGLMYWEMDKKEAAISLYRQAAVL-------GDP---AGQFNLGIS 178 (342)
Q Consensus 119 ~~~~~A~~~~~~A~~~-------~~~---~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-------~~~---~a~~~Lg~~ 178 (342)
+++++|+..|+++++. .++ .++.+||.+|...|++++|+.+++++++. .+| ..+++||.+
T Consensus 301 g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~ 380 (429)
T 3qwp_A 301 WKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKL 380 (429)
T ss_dssp TCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHH
Confidence 5888888888888864 233 45678888888888888888888888742 344 467788888
Q ss_pred HHcCCccCHHHHHHHHHHHHH
Q 019340 179 YLQAQPANAEEAVKLLYQASI 199 (342)
Q Consensus 179 ~~~g~~~~~~~A~~~~~~a~~ 199 (342)
|. ..|++++|+.+|+++++
T Consensus 381 ~~--~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 381 QL--HQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HH--HTTCHHHHHHHHHHHHH
T ss_pred HH--hcCCHHHHHHHHHHHHH
Confidence 88 78888888888888865
No 214
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.90 E-value=7.9e-05 Score=69.00 Aligned_cols=81 Identities=9% Similarity=-0.081 Sum_probs=47.5
Q ss_pred cCCCHHHHHHHHHHHHhC-------CCH---HHHHHHHHHHHcCCccCHHHHHHHHHHHHHc-------CCH---HHHHH
Q 019340 149 EMDKKEAAISLYRQAAVL-------GDP---AGQFNLGISYLQAQPANAEEAVKLLYQASIA-------GHV---RAQYQ 208 (342)
Q Consensus 149 ~~~~~~~A~~~~~~a~~~-------~~~---~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~-------~~~---~a~~~ 208 (342)
..|++++|+.+|+++++. +++ ..+.+||.+|. ..|++++|+.+|+++++. ++| ..+++
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~--~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 387 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCL--YMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLK 387 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHH--hhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHH
Confidence 346667777777776642 232 45666666666 666777777777766541 232 34556
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHHH
Q 019340 209 LALCLHRGRGVDFNLQEAARWYLRAAE 235 (342)
Q Consensus 209 lg~~~~~g~~~~~~~~~A~~~~~~A~~ 235 (342)
||.+|.. .+++++|+.+|++|++
T Consensus 388 La~~~~~----qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 388 LGRLYMG----LENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHH----TTCHHHHHHHHHHHHH
T ss_pred HHHHHHh----ccCHHHHHHHHHHHHH
Confidence 6666655 4456666666666553
No 215
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=97.85 E-value=0.0013 Score=62.11 Aligned_cols=162 Identities=12% Similarity=-0.068 Sum_probs=123.5
Q ss_pred CHHH-HHHHHHHHhcCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCC-------ccCHHHHHHHHHHHHHcC---
Q 019340 136 STLA-MVDAGLMYWEMDKKEAAISLYRQAAVLG---DPAGQFNLGISYLQAQ-------PANAEEAVKLLYQASIAG--- 201 (342)
Q Consensus 136 ~~~a-~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~~~~g~-------~~~~~~A~~~~~~a~~~~--- 201 (342)
.+++ +..+=..+.+.|+.++|+++|++..+.| +...+..|-.++..+. .++.++|...|.+....|
T Consensus 24 spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~P 103 (501)
T 4g26_A 24 SPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVP 103 (501)
T ss_dssp CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCC
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCC
Confidence 3444 3444567778899999999999988764 4555555544544211 235789999999988876
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcC---CH
Q 019340 202 HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG---YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCG---HG 275 (342)
Q Consensus 202 ~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 275 (342)
+...+..|-..|.. .++.++|..+|++..+.| +...+..|-..|... | +.++|.+.|+.-.+.| +.
T Consensus 104 d~~tyn~lI~~~~~----~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~-g---~~~~A~~l~~~M~~~G~~Pd~ 175 (501)
T 4g26_A 104 NEATFTNGARLAVA----KDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRK-G---DADKAYEVDAHMVESEVVPEE 175 (501)
T ss_dssp CHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTTCCCCH
T ss_pred CHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHC-C---CHHHHHHHHHHHHhcCCCCCH
Confidence 66777777777766 679999999999988875 666777777777552 2 8999999999988764 57
Q ss_pred HHHHHHHHHhhhcCCHHHHHHHHHHHHHcC
Q 019340 276 KAQLEHGLGLFTEGEMMKAVVYLELATRAG 305 (342)
Q Consensus 276 ~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~ 305 (342)
..+..|-..|...|+.++|..+|++.-+.+
T Consensus 176 ~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g 205 (501)
T 4g26_A 176 PELAALLKVSMDTKNADKVYKTLQRLRDLV 205 (501)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhCCCHHHHHHHHHHHHHhC
Confidence 788889899999999999999999988765
No 216
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=97.83 E-value=0.0036 Score=59.04 Aligned_cols=146 Identities=13% Similarity=0.007 Sum_probs=115.0
Q ss_pred cCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHhcC---------CCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcC
Q 019340 118 RKNLDKALDSFLKGAARG---STLAMVDAGLMYWEM---------DKKEAAISLYRQAAVLG---DPAGQFNLGISYLQA 182 (342)
Q Consensus 118 ~~~~~~A~~~~~~A~~~~---~~~a~~~lg~~~~~~---------~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~~~~g 182 (342)
.|+.++|+.+|.+..+.| +...+..|=..+... ++.++|...|++....| |...+..|-..|.
T Consensus 39 ~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~-- 116 (501)
T 4g26_A 39 KGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAV-- 116 (501)
T ss_dssp SCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH--
T ss_pred CCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH--
Confidence 479999999999998876 556666555555543 35899999999988774 6677777777777
Q ss_pred CccCHHHHHHHHHHHHHcC---CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCc
Q 019340 183 QPANAEEAVKLLYQASIAG---HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG---YVRAMYNTSLCYSFGEGLP 256 (342)
Q Consensus 183 ~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~~---~~~a~~~lg~~y~~g~g~~ 256 (342)
..++.++|+..|++..+.| +...+..|=..|.. .++.++|.+.|.+..+.| +...+..|-..|... |
T Consensus 117 ~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~----~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~-g-- 189 (501)
T 4g26_A 117 AKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCR----KGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDT-K-- 189 (501)
T ss_dssp HHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT-T--
T ss_pred hcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHH----CCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhC-C--
Confidence 7899999999999988876 66777776666655 668999999999998876 667777787778653 3
Q ss_pred ccHHHHHHHHHHHHHcC
Q 019340 257 LSHRQARKWMKRAADCG 273 (342)
Q Consensus 257 ~~~~~A~~~~~~a~~~~ 273 (342)
+.++|...|++--+.+
T Consensus 190 -~~d~A~~ll~~Mr~~g 205 (501)
T 4g26_A 190 -NADKVYKTLQRLRDLV 205 (501)
T ss_dssp -CHHHHHHHHHHHHHHT
T ss_pred -CHHHHHHHHHHHHHhC
Confidence 9999999999987753
No 217
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.80 E-value=0.0001 Score=52.64 Aligned_cols=70 Identities=7% Similarity=-0.062 Sum_probs=57.4
Q ss_pred CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCcH
Q 019340 237 GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGET 307 (342)
Q Consensus 237 ~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~ 307 (342)
.++..+..+|.++....+ ....++|..++++|+.. +++.+.+.||.+++..|++++|+.+|+++++.+++
T Consensus 4 ~~~~~~~~~a~al~~~~~-~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHK-QAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCHHHHHHHHHHHHHTTT-TCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 467777788877743322 23578999999999876 67999999999999999999999999999998876
No 218
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.79 E-value=9.3e-05 Score=63.83 Aligned_cols=98 Identities=12% Similarity=0.051 Sum_probs=54.4
Q ss_pred CHHHHHHHHHHHHc-------CCCCcCCHHHHHHHHHHHHhCC----CHHHHHHHHHHHhc-----CCCHHHHHHHHHHH
Q 019340 100 EAMVLLRWGKRFKH-------GRGVRKNLDKALDSFLKGAARG----STLAMVDAGLMYWE-----MDKKEAAISLYRQA 163 (342)
Q Consensus 100 ~a~a~~~lg~~y~~-------g~g~~~~~~~A~~~~~~A~~~~----~~~a~~~lg~~~~~-----~~~~~~A~~~~~~a 163 (342)
++++++.+|..... |+|.....++|...+++|++++ +..++..||.+|.. .|+.++|.++|++|
T Consensus 151 dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferA 230 (301)
T 3u64_A 151 DVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHL 230 (301)
T ss_dssp GHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHH
Confidence 45555555555433 1233344556666666666653 34456666666655 36666666666666
Q ss_pred HhC--C-CHHHHHHHHHHHHcCC-ccCHHHHHHHHHHHHH
Q 019340 164 AVL--G-DPAGQFNLGISYLQAQ-PANAEEAVKLLYQASI 199 (342)
Q Consensus 164 ~~~--~-~~~a~~~Lg~~~~~g~-~~~~~~A~~~~~~a~~ 199 (342)
++. + +..+.+..|..+. . .++++++..++++++.
T Consensus 231 L~LnP~~~id~~v~YA~~l~--~~~gd~~~a~~~L~kAL~ 268 (301)
T 3u64_A 231 TRYCSAHDPDHHITYADALC--IPLNNRAGFDEALDRALA 268 (301)
T ss_dssp HHHCCTTCSHHHHHHHHHTT--TTTTCHHHHHHHHHHHHH
T ss_pred HHhCCCCCchHHHHHHHHHH--HhcCCHHHHHHHHHHHHc
Confidence 544 2 2566666666554 4 3566666666666655
No 219
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.79 E-value=8.2e-05 Score=53.15 Aligned_cols=68 Identities=9% Similarity=-0.178 Sum_probs=39.5
Q ss_pred CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCC
Q 019340 99 REAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLG 167 (342)
Q Consensus 99 ~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~ 167 (342)
.++..+..+|.++... +-....++|..++++|+.. +++.+.+.+|.+++..|++++|+.+|+++++.+
T Consensus 4 ~~~~~~~~~a~al~~~-~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 4 VTATQLAAKATTLYYL-HKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCHHHHHHHHHHHHHT-TTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHh-cCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 3556666666655431 0012356666666666654 366666666666666666666666666666553
No 220
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.65 E-value=0.00034 Score=64.75 Aligned_cols=81 Identities=10% Similarity=-0.132 Sum_probs=49.6
Q ss_pred cCCCHHHHHHHHHHHHhC-------CC---HHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc-------CCH---HHHHH
Q 019340 149 EMDKKEAAISLYRQAAVL-------GD---PAGQFNLGISYLQAQPANAEEAVKLLYQASIA-------GHV---RAQYQ 208 (342)
Q Consensus 149 ~~~~~~~A~~~~~~a~~~-------~~---~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~-------~~~---~a~~~ 208 (342)
..|++++|+..|+++++. .+ ...+.+||.+|. ..|++++|+.+++++++. .+| ..+++
T Consensus 299 ~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~--~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 299 AHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACI--NLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHH--HHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred hhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHH--hhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 456777777777777643 23 345666777776 667777777777776541 233 34556
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHHH
Q 019340 209 LALCLHRGRGVDFNLQEAARWYLRAAE 235 (342)
Q Consensus 209 lg~~~~~g~~~~~~~~~A~~~~~~A~~ 235 (342)
||.+|.. .+++++|+.+|++|++
T Consensus 377 La~~~~~----~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 377 VGKLQLH----QGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHH----TTCHHHHHHHHHHHHH
T ss_pred HHHHHHh----cCCHHHHHHHHHHHHH
Confidence 6666665 4456666666666654
No 221
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.43 E-value=0.0033 Score=47.10 Aligned_cols=98 Identities=11% Similarity=0.117 Sum_probs=76.8
Q ss_pred CHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCC----HHHHHHHHHHhhhcCCHHHHH
Q 019340 222 NLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGH----GKAQLEHGLGLFTEGEMMKAV 295 (342)
Q Consensus 222 ~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~----~~a~~~Lg~~~~~~~~~~~A~ 295 (342)
....+...|.+.... ...++.+++++++.... .+.+..+++..++..+..++ -+.+|.||..++..|+|++|+
T Consensus 16 ~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~-~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTR-YNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSS-SHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 345666777777663 46889999999996643 46678889999999888764 367899999999999999999
Q ss_pred HHHHHHHHcCc--HHHHHHHHHHHhhc
Q 019340 296 VYLELATRAGE--TAADHVKNVILQQL 320 (342)
Q Consensus 296 ~~~~~a~~~~~--~~a~~~~~~~~~~~ 320 (342)
.+.+..++..| ..|..+...+...+
T Consensus 95 ~~~~~lL~~eP~n~QA~~Lk~~i~~~i 121 (126)
T 1nzn_A 95 KYVRGLLQTEPQNNQAKELERLIDKAM 121 (126)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 99999998865 77777776666543
No 222
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.00 E-value=0.0052 Score=48.16 Aligned_cols=129 Identities=12% Similarity=0.089 Sum_probs=75.3
Q ss_pred HHHHHHhhCCChhHHhhHHHHHHHHHHhCcCCC-------HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC-----
Q 019340 68 VLNKIAASFTLPQLRAASLVCKSWNDALRPLRE-------AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG----- 135 (342)
Q Consensus 68 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~----- 135 (342)
+++.+..++..+-+..|..+...........++ +..++.+|..+.. .+++.+|...|++|++..
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~----~~eyrrA~~~y~qALq~~k~l~k 98 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFH----DKEYRNAVSKYTMALQQKKALSK 98 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHc----ccHHHHHHHHHHHHHHHHHHHhc
Confidence 456666667777788777666655555433333 3577778888888 588999999999987641
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-CCCHHHHHHHHHHHHcCCccCHHHHHHHHHHH-HHcCCHHHHHHHHHHH
Q 019340 136 STLAMVDAGLMYWEMDKKEAAISLYRQAAV-LGDPAGQFNLGISYLQAQPANAEEAVKLLYQA-SIAGHVRAQYQLALCL 213 (342)
Q Consensus 136 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~-~~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a-~~~~~~~a~~~lg~~~ 213 (342)
+..+...++. ...... ... ..+.+.-|.++.||. ..+++++|+..++.. .+...+.....||.+|
T Consensus 99 ~~s~~~~~~~----~ss~p~-------s~~~~~e~Elkykia~C~~--~l~~~~~Ai~~Le~Ip~k~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 99 TSKVRPSTGN----SASTPQ-------SQCLPSEIEVKYKLAECYT--VLKQDKDAIAILDGIPSRQRTPKINMLLANLY 165 (167)
T ss_dssp -----------------------------CCCCHHHHHHHHHHHHH--HTTCHHHHHHHHHTSCGGGCCHHHHHHHHHHC
T ss_pred CCCccccccc----cCCCcc-------cccccchHHHHHHHHHHHH--HHCCHHHHHHHHhcCCchhcCHHHHHHHHHHh
Confidence 1111101110 000000 001 134466677777777 777777777777663 4456677777777666
No 223
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=96.92 E-value=0.12 Score=48.44 Aligned_cols=255 Identities=7% Similarity=-0.103 Sum_probs=132.7
Q ss_pred cHHHHHHHHhhCCChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC-----CCHHH
Q 019340 65 PFDVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR-----GSTLA 139 (342)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~-----~~~~a 139 (342)
.+.+..++...|..+++..+..++.+++...+ ....+......... .+ ...+.....|+.|+.. .+...
T Consensus 14 aR~vyer~l~~~P~~~~e~~~~iferal~~~p---s~~LW~~Y~~f~~~-~~--~~~~~i~~~fe~al~~vg~d~~s~~i 87 (493)
T 2uy1_A 14 PSAIMEHARRLYMSKDYRSLESLFGRCLKKSY---NLDLWMLYIEYVRK-VS--QKKFKLYEVYEFTLGQFENYWDSYGL 87 (493)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCC---CHHHHHHHHHHHHH-HC------CTHHHHHHHHHHSTTCTTCHHH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHhccCC---CHHHHHHHHHHHHH-hC--chHHHHHHHHHHHHHHcCCCcccHHH
Confidence 66777778777777888888877777776543 44433332222222 11 1234556677777762 24566
Q ss_pred HHHHHHHHhc----CCCHHHHHHHHHHHHhCC--CHHHHH----------------------------------------
Q 019340 140 MVDAGLMYWE----MDKKEAAISLYRQAAVLG--DPAGQF---------------------------------------- 173 (342)
Q Consensus 140 ~~~lg~~~~~----~~~~~~A~~~~~~a~~~~--~~~a~~---------------------------------------- 173 (342)
+......+.. .++.+.+...|++|+... +.+-++
T Consensus 88 W~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~ 167 (493)
T 2uy1_A 88 YKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLI 167 (493)
T ss_dssp HHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 6555555432 256777888888887531 111000
Q ss_pred -------HHHHHHH-cCCc---c---CHHHHHHHHHHHHH--cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCC
Q 019340 174 -------NLGISYL-QAQP---A---NAEEAVKLLYQASI--AGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG 237 (342)
Q Consensus 174 -------~Lg~~~~-~g~~---~---~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~~ 237 (342)
..-.+-+ .+.. . ........|++++. +..+..+...+..+.. .++.++|...|++|+..
T Consensus 168 ~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~----~~~~~~ar~i~erAi~~- 242 (493)
T 2uy1_A 168 RGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIG----IGQKEKAKKVVERGIEM- 242 (493)
T ss_dssp HTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH-
T ss_pred hhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhC-
Confidence 0000001 0110 0 03345667777776 4567788888877765 55788888888888765
Q ss_pred CHH--HHHHHHHH----------------------------------------HHcCCCCcccHHHHHHHHHHHHHcC--
Q 019340 238 YVR--AMYNTSLC----------------------------------------YSFGEGLPLSHRQARKWMKRAADCG-- 273 (342)
Q Consensus 238 ~~~--a~~~lg~~----------------------------------------y~~g~g~~~~~~~A~~~~~~a~~~~-- 273 (342)
... .+...+.. ..+ ..+.+.|...|.+| ...
T Consensus 243 P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r----~~~~~~AR~i~~~A-~~~~~ 317 (493)
T 2uy1_A 243 SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLK----KRGLELFRKLFIEL-GNEGV 317 (493)
T ss_dssp CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHH----HHCHHHHHHHHHHH-TTSCC
T ss_pred CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHH----cCCHHHHHHHHHHh-hCCCC
Confidence 211 11111111 101 22466677777777 321
Q ss_pred CHHHHHHHHHHhhhcC-CHHHHHHHHHHHHHcCcHHHHHHHHHHHhhcChhcHHHHHHHHHhh
Q 019340 274 HGKAQLEHGLGLFTEG-EMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSW 335 (342)
Q Consensus 274 ~~~a~~~Lg~~~~~~~-~~~~A~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~ 335 (342)
....+...+.+....+ +.+.|...|++++...+.........+.-....++.+.++.+..+.
T Consensus 318 ~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 318 GPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp CHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred ChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 2233333344444333 5888888888887753222211111222222345566666665553
No 224
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=96.82 E-value=0.0081 Score=47.09 Aligned_cols=115 Identities=10% Similarity=-0.036 Sum_probs=77.2
Q ss_pred CCHHHHHHHHHHHHhC--CCH---------HHHHHHHHHHhcCCCHHHHHHHHHHHHhC-----CCHHHHHHHHHHHHcC
Q 019340 119 KNLDKALDSFLKGAAR--GST---------LAMVDAGLMYWEMDKKEAAISLYRQAAVL-----GDPAGQFNLGISYLQA 182 (342)
Q Consensus 119 ~~~~~A~~~~~~A~~~--~~~---------~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-----~~~~a~~~Lg~~~~~g 182 (342)
+.++.|+.....++.. +++ .+++.+|..++..+++.+|...|++|+.. .++.+...++. .-
T Consensus 34 ~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~-~s-- 110 (167)
T 3ffl_A 34 GLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGN-SA-- 110 (167)
T ss_dssp TCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----------------
T ss_pred hhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccc-cC--
Confidence 6888888888886553 222 37789999999999999999999999854 22222112221 00
Q ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH-HHCCCHHHHHHHHHHH
Q 019340 183 QPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRA-AEGGYVRAMYNTSLCY 249 (342)
Q Consensus 183 ~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A-~~~~~~~a~~~lg~~y 249 (342)
....... ...+.+..|.++.||.. .+++++|+..++.. .....+.....||.+|
T Consensus 111 ---s~p~s~~------~~~e~Elkykia~C~~~----l~~~~~Ai~~Le~Ip~k~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 111 ---STPQSQC------LPSEIEVKYKLAECYTV----LKQDKDAIAILDGIPSRQRTPKINMLLANLY 165 (167)
T ss_dssp ---------C------CCCHHHHHHHHHHHHHH----TTCHHHHHHHHHTSCGGGCCHHHHHHHHHHC
T ss_pred ---CCccccc------ccchHHHHHHHHHHHHH----HCCHHHHHHHHhcCCchhcCHHHHHHHHHHh
Confidence 0000000 02356888999999998 88999999999876 4457888888999887
No 225
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.72 E-value=0.049 Score=40.70 Aligned_cols=62 Identities=15% Similarity=0.092 Sum_probs=31.3
Q ss_pred CHHHHHHHHHHHhcCCCHHH---HHHHHHHHHhCCC----HHHHHHHHHHHHcCCccCHHHHHHHHHHHHH
Q 019340 136 STLAMVDAGLMYWEMDKKEA---AISLYRQAAVLGD----PAGQFNLGISYLQAQPANAEEAVKLLYQASI 199 (342)
Q Consensus 136 ~~~a~~~lg~~~~~~~~~~~---A~~~~~~a~~~~~----~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~ 199 (342)
...+.+++|.++....+... +|.+++..+..++ -+.+|.||..++ ..++|.+|..+++..++
T Consensus 34 s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~y--klg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 34 SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY--RLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHH
Confidence 44555555555555443322 5555555554432 245555555555 55555555555555443
No 226
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=96.67 E-value=0.1 Score=48.94 Aligned_cols=170 Identities=6% Similarity=-0.103 Sum_probs=108.1
Q ss_pred HHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCccC-HHHHHHHHHHH
Q 019340 121 LDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQFNLGISYLQAQPAN-AEEAVKLLYQA 197 (342)
Q Consensus 121 ~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~g~~~~-~~~A~~~~~~a 197 (342)
.+.....|++++.. ..+..++..+..+...|+.++|...|++|+.. .......+..+... +..+ ++.....+. .
T Consensus 195 ~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~-e~~~~~~~l~~~~~-~ 271 (493)
T 2uy1_A 195 ESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVM-DEEAVYGDLKRKYS-M 271 (493)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHT-TCTHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhc-chhHHHHHHHHHHH-h
Confidence 45677899999984 57899999999999999999999999999877 33323333222220 1111 111111100 0
Q ss_pred HH---------cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCcccHHHHHHHH
Q 019340 198 SI---------AGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG--YVRAMYNTSLCYSFGEGLPLSHRQARKWM 266 (342)
Q Consensus 198 ~~---------~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~y~~g~g~~~~~~~A~~~~ 266 (342)
.+ ......+...+.+... .++.+.|...|.+| ... ....+...+.+-.. ..++.+.|...|
T Consensus 272 ~~~~~~~~~~~~~~~~lw~~y~~~~~r----~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~---~~~d~~~ar~if 343 (493)
T 2uy1_A 272 GEAESAEKVFSKELDLLRINHLNYVLK----KRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYY---ATGSRATPYNIF 343 (493)
T ss_dssp ---------CHHHHHHHHHHHHHHHHH----HHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHH---HHCCSHHHHHHH
T ss_pred hccchhhhhcccccHHHHHHHHHHHHH----cCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHH---HCCChHHHHHHH
Confidence 00 0012445555665544 34689999999999 422 23444444443322 122789999999
Q ss_pred HHHHHc--CCHHHHHHHHHHhhhcCCHHHHHHHHHHH
Q 019340 267 KRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELA 301 (342)
Q Consensus 267 ~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a 301 (342)
+.++.. +.+.-+...+......|+.+.|...|+++
T Consensus 344 e~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 344 SSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999985 34555566677677889999999999997
No 227
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=96.66 E-value=0.016 Score=43.59 Aligned_cols=82 Identities=11% Similarity=0.104 Sum_probs=67.4
Q ss_pred CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCC---HHHHHHHHHHhhhcCCHHHHHHHHHHHHHcC--cHHHHHH
Q 019340 238 YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGH---GKAQLEHGLGLFTEGEMMKAVVYLELATRAG--ETAADHV 312 (342)
Q Consensus 238 ~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~---~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~ 312 (342)
.+.+.+++++++.... ...+..+++..++.....++ -+.+|.|+..++..|+|++|..+.+..++.. +..|..+
T Consensus 39 s~qt~F~yAw~Lv~S~-~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~L 117 (134)
T 3o48_A 39 TIQSRFNYAWGLIKST-DVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL 117 (134)
T ss_dssp CHHHHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred ChhhHHHHHHHHHcCC-CHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHH
Confidence 5788899999887654 36688899999999887543 5788999999999999999999999999884 6777777
Q ss_pred HHHHHhhc
Q 019340 313 KNVILQQL 320 (342)
Q Consensus 313 ~~~~~~~~ 320 (342)
...+...+
T Consensus 118 k~~Ie~ki 125 (134)
T 3o48_A 118 KSMVEDKI 125 (134)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77766554
No 228
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=96.35 E-value=0.048 Score=41.53 Aligned_cols=83 Identities=11% Similarity=0.105 Sum_probs=67.0
Q ss_pred CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcC---CHHHHHHHHHHhhhcCCHHHHHHHHHHHHHcC--cHHHHH
Q 019340 237 GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCG---HGKAQLEHGLGLFTEGEMMKAVVYLELATRAG--ETAADH 311 (342)
Q Consensus 237 ~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~ 311 (342)
-.+++.+++++++.... ...+..+++..++.....+ .-+.+|.|+..++..|+|++|..+.+..++.. +..+..
T Consensus 37 vs~~t~F~YAw~Lv~S~-~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKST-DVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp SCHHHHHHHHHHHHHSS-SHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CcHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 36788999999886654 3678889999999988753 35788999999999999999999999999885 566777
Q ss_pred HHHHHHhhc
Q 019340 312 VKNVILQQL 320 (342)
Q Consensus 312 ~~~~~~~~~ 320 (342)
+...+...+
T Consensus 116 Lk~~Ie~~i 124 (144)
T 1y8m_A 116 LKSMVEDKI 124 (144)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 766665543
No 229
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.51 E-value=1.1 Score=44.18 Aligned_cols=148 Identities=15% Similarity=0.116 Sum_probs=80.7
Q ss_pred CCHHHHHH-HHHHHHhCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCccCHHHHHHHHHHH
Q 019340 119 KNLDKALD-SFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQFNLGISYLQAQPANAEEAVKLLYQA 197 (342)
Q Consensus 119 ~~~~~A~~-~~~~A~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a 197 (342)
+++++|.. ++.. ..+......+...+...|.+++|++..+ ++..-+.++ . ..+++++|.+..+
T Consensus 613 ~~~~~a~~~~l~~---i~~~~~~~~~~~~l~~~~~~~~a~~~~~------~~~~~f~~~---l--~~~~~~~A~~~~~-- 676 (814)
T 3mkq_A 613 GEIEEAIENVLPN---VEGKDSLTKIARFLEGQEYYEEALNISP------DQDQKFELA---L--KVGQLTLARDLLT-- 676 (814)
T ss_dssp TCHHHHHHHTGGG---CCCHHHHHHHHHHHHHTTCHHHHHHHCC------CHHHHHHHH---H--HHTCHHHHHHHHT--
T ss_pred CCHHHHHHHHHhc---CCchHHHHHHHHHHHhCCChHHheecCC------Ccchheehh---h--hcCCHHHHHHHHH--
Confidence 57777765 4310 0101222445556666777777776542 333333332 2 3457777776643
Q ss_pred HHcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCCHHH
Q 019340 198 SIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKA 277 (342)
Q Consensus 198 ~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a 277 (342)
...++..|..||..+.. .++++.|+++|.++ ++...... +|.. .| +.++.....+.+...+....
T Consensus 677 -~~~~~~~W~~la~~al~----~~~~~~A~~~y~~~---~d~~~l~~---l~~~-~~---~~~~~~~~~~~a~~~~~~~~ 741 (814)
T 3mkq_A 677 -DESAEMKWRALGDASLQ----RFNFKLAIEAFTNA---HDLESLFL---LHSS-FN---NKEGLVTLAKDAETTGKFNL 741 (814)
T ss_dssp -TCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHH---TCHHHHHH---HHHH-TT---CHHHHHHHHHHHHHTTCHHH
T ss_pred -hhCcHhHHHHHHHHHHH----cCCHHHHHHHHHHc---cChhhhHH---HHHH-cC---CHHHHHHHHHHHHHcCchHH
Confidence 23567788888888887 66888888888875 23332222 2221 11 55555555555555555443
Q ss_pred HHHHHHHhhhcCCHHHHHHHHHH
Q 019340 278 QLEHGLGLFTEGEMMKAVVYLEL 300 (342)
Q Consensus 278 ~~~Lg~~~~~~~~~~~A~~~~~~ 300 (342)
.+.+ |...|++++|++.|..
T Consensus 742 A~~~---~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 742 AFNA---YWIAGDIQGAKDLLIK 761 (814)
T ss_dssp HHHH---HHHHTCHHHHHHHHHH
T ss_pred HHHH---HHHcCCHHHHHHHHHH
Confidence 3322 4446666666666543
No 230
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=94.77 E-value=2.4 Score=42.64 Aligned_cols=193 Identities=13% Similarity=0.141 Sum_probs=90.5
Q ss_pred HHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHh---CCC----HHHHHHHHHHHhcCCCHHHHHHHHHH
Q 019340 90 SWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAA---RGS----TLAMVDAGLMYWEMDKKEAAISLYRQ 162 (342)
Q Consensus 90 ~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~---~~~----~~a~~~lg~~~~~~~~~~~A~~~~~~ 162 (342)
.|+-+..+.+.-.+...||.++. ++.++++..+.+-+. .++ .-+.+.+|.++...++ +++.++..
T Consensus 365 ~Wl~k~~~~~k~sA~aSLGlIh~------g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~--~~~~lL~~ 436 (963)
T 4ady_A 365 PWLGKAQNWAKFTATASLGVIHK------GNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGR--DTTDYLKN 436 (963)
T ss_dssp HHHHHCCTHHHHHHHHHHHHHTS------SCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTH--HHHHHHHH
T ss_pred hhhhccchHHHHHHHHHhhhhcc------CchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcH--HHHHHHHH
Confidence 35444333223345566666663 345556666665554 222 3456667776655443 46666666
Q ss_pred HHhCCC--------H----HHHHHHHHHHHcCCccCHHHHHHHHHHHHHcCCH----HHHHHHHHHHhcCCCCCCCHHHH
Q 019340 163 AAVLGD--------P----AGQFNLGISYLQAQPANAEEAVKLLYQASIAGHV----RAQYQLALCLHRGRGVDFNLQEA 226 (342)
Q Consensus 163 a~~~~~--------~----~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~~~~----~a~~~lg~~~~~g~~~~~~~~~A 226 (342)
.+...+ + .|...||.+|. ..++ ++++..+...+..++. .+.+.||.++.. .+|.+-.
T Consensus 437 ~L~~~~~~~~~~~~~~ir~gAaLGLGla~~--GS~~-eev~e~L~~~L~dd~~~~~~~AalALGli~vG----Tgn~~ai 509 (963)
T 4ady_A 437 IIVENSGTSGDEDVDVLLHGASLGIGLAAM--GSAN-IEVYEALKEVLYNDSATSGEAAALGMGLCMLG----TGKPEAI 509 (963)
T ss_dssp HHHHHSSCCSCHHHHHHHHHHHHHHHHHST--TCCC-HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTT----CCCHHHH
T ss_pred HHcCccccccccccHHHHHHHHHHHHHHhc--CCCC-HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcc----cCCHHHH
Confidence 554322 1 35556666655 3333 3555556655554432 344556666543 3344444
Q ss_pred HHHHHHHHHCCCHH----HHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCCH----HHHHHHHHHhhhcCCHHHHHHHH
Q 019340 227 ARWYLRAAEGGYVR----AMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHG----KAQLEHGLGLFTEGEMMKAVVYL 298 (342)
Q Consensus 227 ~~~~~~A~~~~~~~----a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~----~a~~~Lg~~~~~~~~~~~A~~~~ 298 (342)
...+..+.+..+.. +...||.++. | +.+.+-...+......++ .+.+.+|..|...|+...-...+
T Consensus 510 ~~LL~~~~e~~~e~vrR~aalgLGll~~---g---~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL 583 (963)
T 4ady_A 510 HDMFTYSQETQHGNITRGLAVGLALINY---G---RQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLL 583 (963)
T ss_dssp HHHHHHHHHCSCHHHHHHHHHHHHHHTT---T---CGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHH
T ss_pred HHHHHHHhccCcHHHHHHHHHHHHhhhC---C---ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 44444444433322 2233444431 1 333333333333332332 23345566666666654444455
Q ss_pred HHHHH
Q 019340 299 ELATR 303 (342)
Q Consensus 299 ~~a~~ 303 (342)
..+..
T Consensus 584 ~~~~~ 588 (963)
T 4ady_A 584 HVAVS 588 (963)
T ss_dssp HHHHH
T ss_pred HHhcc
Confidence 55543
No 231
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=94.30 E-value=1.3 Score=33.63 Aligned_cols=80 Identities=1% Similarity=-0.134 Sum_probs=59.9
Q ss_pred CCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHH
Q 019340 98 LREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG---STLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQ 172 (342)
Q Consensus 98 ~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~ 172 (342)
.....+.|+++.++.+. ..+.|..+++.+++.....+ .-+.+|.||..+.+.|++++|..+.+..++. +|..|.
T Consensus 36 ~vs~~t~F~YAw~Lv~S-~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~ 114 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKS-TDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 114 (144)
T ss_dssp TSCHHHHHHHHHHHHHS-SSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHH
T ss_pred CCcHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHH
Confidence 45678888888887774 33566778999999888743 4577888999999999999999998888754 677666
Q ss_pred HHHHHH
Q 019340 173 FNLGIS 178 (342)
Q Consensus 173 ~~Lg~~ 178 (342)
.....+
T Consensus 115 ~Lk~~I 120 (144)
T 1y8m_A 115 ALKSMV 120 (144)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 554433
No 232
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=93.87 E-value=0.84 Score=34.21 Aligned_cols=81 Identities=2% Similarity=-0.102 Sum_probs=62.0
Q ss_pred cCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHH
Q 019340 97 PLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG---STLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAG 171 (342)
Q Consensus 97 ~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a 171 (342)
....+.+.|+++.++.+. ..+.|..+++.+++.....+ .-+.++.||..+.+.|++++|.++.+..++. ++..|
T Consensus 36 ~~vs~qt~F~yAw~Lv~S-~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA 114 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKS-TDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 114 (134)
T ss_dssp GGSCHHHHHHHHHHHHHS-SCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred CCCChhhHHHHHHHHHcC-CCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHH
Confidence 344667888888777774 33557778999998888754 3677899999999999999999999998855 67777
Q ss_pred HHHHHHH
Q 019340 172 QFNLGIS 178 (342)
Q Consensus 172 ~~~Lg~~ 178 (342)
......+
T Consensus 115 ~~Lk~~I 121 (134)
T 3o48_A 115 GALKSMV 121 (134)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6554444
No 233
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=93.42 E-value=0.35 Score=37.20 Aligned_cols=51 Identities=16% Similarity=0.188 Sum_probs=40.8
Q ss_pred ccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCcH
Q 019340 257 LSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGET 307 (342)
Q Consensus 257 ~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~ 307 (342)
+|.++|.+.|+.++.. .-+..+...+.-..++|+..+|.+.+.+|+..++.
T Consensus 74 ~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 5999999999999776 22455556666667799999999999999998873
No 234
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=93.04 E-value=2.7 Score=33.23 Aligned_cols=108 Identities=13% Similarity=0.110 Sum_probs=58.1
Q ss_pred CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 019340 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQFNLGISY 179 (342)
Q Consensus 100 ~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~ 179 (342)
|+..-|.|++-+ +|++.|.+..+. .++..-|..||......|+++-|.++|.++- |.... ..+|
T Consensus 7 D~~~rF~LAL~l-------g~l~~A~e~a~~---l~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~---D~~~L---~~Ly 70 (177)
T 3mkq_B 7 DPHIRFDLALEY-------GNLDAALDEAKK---LNDSITWERLIQEALAQGNASLAEMIYQTQH---SFDKL---SFLY 70 (177)
T ss_dssp CHHHHHHHHHHT-------TCHHHHHHHHHH---HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTT---CHHHH---HHHH
T ss_pred ChHHHHHHHHhc-------CCHHHHHHHHHH---hCCHHHHHHHHHHHHHcCChHHHHHHHHHhC---CHHHH---HHHH
Confidence 455555555432 677777776544 3667777788888878888888887777652 22222 2223
Q ss_pred HcCCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHH
Q 019340 180 LQAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLR 232 (342)
Q Consensus 180 ~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~ 232 (342)
. ..|+.++-.+.-+.+...++....+.... . .+|.+++++.|.+
T Consensus 71 ~--~tg~~e~L~kla~iA~~~g~~n~af~~~l---~----lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 71 L--VTGDVNKLSKMQNIAQTREDFGSMLLNTF---Y----NNSTKERSSIFAE 114 (177)
T ss_dssp H--HHTCHHHHHHHHHHHHHTTCHHHHHHHHH---H----HTCHHHHHHHHHH
T ss_pred H--HhCCHHHHHHHHHHHHHCccHHHHHHHHH---H----cCCHHHHHHHHHH
Confidence 3 33444443333333444444433333211 1 3456666666644
No 235
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=92.57 E-value=2.7 Score=41.25 Aligned_cols=66 Identities=17% Similarity=0.056 Sum_probs=48.4
Q ss_pred cCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCccCHHHHHHHHHHH
Q 019340 118 RKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQFNLGISYLQAQPANAEEAVKLLYQA 197 (342)
Q Consensus 118 ~~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a 197 (342)
.+..++|++..+ ++...+.+ ....|++++|.+.. -...++..|..||..+. ..++++.|..+|.++
T Consensus 642 ~~~~~~a~~~~~------~~~~~f~~---~l~~~~~~~A~~~~---~~~~~~~~W~~la~~al--~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 642 QEYYEEALNISP------DQDQKFEL---ALKVGQLTLARDLL---TDESAEMKWRALGDASL--QRFNFKLAIEAFTNA 707 (814)
T ss_dssp TTCHHHHHHHCC------CHHHHHHH---HHHHTCHHHHHHHH---TTCCCHHHHHHHHHHHH--HTTCHHHHHHHHHHH
T ss_pred CCChHHheecCC------Ccchheeh---hhhcCCHHHHHHHH---HhhCcHhHHHHHHHHHH--HcCCHHHHHHHHHHc
Confidence 356666665442 34333433 35679999998873 34588999999999999 889999999999976
No 236
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=92.52 E-value=9.8 Score=38.35 Aligned_cols=213 Identities=13% Similarity=0.116 Sum_probs=114.9
Q ss_pred CCChhHHhhHHHHHHHHHHh-Cc--CCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCCC--------H----HHH
Q 019340 76 FTLPQLRAASLVCKSWNDAL-RP--LREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGS--------T----LAM 140 (342)
Q Consensus 76 ~~~~~~~~a~~~~~~~~~~~-~~--~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~--------~----~a~ 140 (342)
...++..++......++... .. .-...+++.||.++.. + + .+++.++...+...+ . .+.
T Consensus 385 Ih~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag---~-~--~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAa 458 (963)
T 4ady_A 385 IHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAG---F-G--RDTTDYLKNIIVENSGTSGDEDVDVLLHGAS 458 (963)
T ss_dssp HTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTT---T-T--HHHHHHHHHHHHHHSSCCSCHHHHHHHHHHH
T ss_pred hccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCC---C-c--HHHHHHHHHHHcCccccccccccHHHHHHHH
Confidence 45556555654444443311 01 1135688889988854 1 2 357887777765433 2 356
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhCCCH----HHHHHHHHHHHcCCccCHHHHHHHHHHHHHcCCHH----HHHHHHHH
Q 019340 141 VDAGLMYWEMDKKEAAISLYRQAAVLGDP----AGQFNLGISYLQAQPANAEEAVKLLYQASIAGHVR----AQYQLALC 212 (342)
Q Consensus 141 ~~lg~~~~~~~~~~~A~~~~~~a~~~~~~----~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~~~~~----a~~~lg~~ 212 (342)
+.||.+|.-.++ ++++..+...+..++. .+.+.||.++. ..++.+.....+..+.+..+.. +...||.+
T Consensus 459 LGLGla~~GS~~-eev~e~L~~~L~dd~~~~~~~AalALGli~v--GTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll 535 (963)
T 4ady_A 459 LGIGLAAMGSAN-IEVYEALKEVLYNDSATSGEAAALGMGLCML--GTGKPEAIHDMFTYSQETQHGNITRGLAVGLALI 535 (963)
T ss_dssp HHHHHHSTTCCC-HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHT--TCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCC-HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhc--ccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhh
Confidence 789998875554 5777888888776553 45667888887 6667655555555555543333 33445555
Q ss_pred HhcCCCCCCCHHHHHHHHHHHHHCCCHHH----HHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCCH----HHHHHHHHH
Q 019340 213 LHRGRGVDFNLQEAARWYLRAAEGGYVRA----MYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHG----KAQLEHGLG 284 (342)
Q Consensus 213 ~~~g~~~~~~~~~A~~~~~~A~~~~~~~a----~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~----~a~~~Lg~~ 284 (342)
+. ++.+.+....+......++.. .+.+|..| .|.| |...-...++.+....+. .|...||.+
T Consensus 536 ~~------g~~e~~~~li~~L~~~~dp~vRygaa~alglAy-aGTG---n~~aIq~LL~~~~~d~~d~VRraAViaLGlI 605 (963)
T 4ady_A 536 NY------GRQELADDLITKMLASDESLLRYGGAFTIALAY-AGTG---NNSAVKRLLHVAVSDSNDDVRRAAVIALGFV 605 (963)
T ss_dssp TT------TCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHT-TTSC---CHHHHHHHHHHHHHCSCHHHHHHHHHHHHHH
T ss_pred hC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-cCCC---CHHHHHHHHHHhccCCcHHHHHHHHHHHHhh
Confidence 43 234444444444444455443 34456666 5665 654444577776654321 244555554
Q ss_pred hhhcCCHHHHHHHHHHHHHcCcHHH
Q 019340 285 LFTEGEMMKAVVYLELATRAGETAA 309 (342)
Q Consensus 285 ~~~~~~~~~A~~~~~~a~~~~~~~a 309 (342)
... +.+.+.+.+....+.+++..
T Consensus 606 ~~g--~~e~v~rlv~~L~~~~d~~V 628 (963)
T 4ady_A 606 LLR--DYTTVPRIVQLLSKSHNAHV 628 (963)
T ss_dssp TSS--SCSSHHHHTTTGGGCSCHHH
T ss_pred ccC--CHHHHHHHHHHHHhcCCHHH
Confidence 333 33334444443333344433
No 237
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=92.38 E-value=0.64 Score=43.43 Aligned_cols=72 Identities=14% Similarity=0.158 Sum_probs=35.5
Q ss_pred HHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHc--CcHHHHHHHHHHH
Q 019340 242 MYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRA--GETAADHVKNVIL 317 (342)
Q Consensus 242 ~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~~~~~~ 317 (342)
...||.+..+.. ....|..||.+|+.. ++...++.||.+....|+.-+|+.||.+++.. ..+.|..++..+.
T Consensus 155 l~~LGDL~RY~~----~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f 230 (497)
T 1ya0_A 155 LVHLGDIARYRN----QTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKAL 230 (497)
T ss_dssp HHHHHHHHHHTT----CHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHH
T ss_pred HHHcccHHHHHH----HHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHH
Confidence 344555544332 445555555555543 33455555555555555555555555555432 2344444444333
No 238
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=91.66 E-value=4.1 Score=32.16 Aligned_cols=54 Identities=19% Similarity=0.071 Sum_probs=31.7
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCccCHHHHHHHHHHH
Q 019340 136 STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQFNLGISYLQAQPANAEEAVKLLYQA 197 (342)
Q Consensus 136 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a 197 (342)
|++..+.++ .+.|+++.|.+..+.. ++..-|..||.... ..++++.|..+|+++
T Consensus 7 D~~~rF~LA---L~lg~l~~A~e~a~~l---~~~~~Wk~Lg~~AL--~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 7 DPHIRFDLA---LEYGNLDAALDEAKKL---NDSITWERLIQEAL--AQGNASLAEMIYQTQ 60 (177)
T ss_dssp CHHHHHHHH---HHTTCHHHHHHHHHHH---CCHHHHHHHHHHHH--HTTCHHHHHHHHHHT
T ss_pred ChHHHHHHH---HhcCCHHHHHHHHHHh---CCHHHHHHHHHHHH--HcCChHHHHHHHHHh
Confidence 344444433 2456666666654332 56666677777766 666777777666654
No 239
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=91.39 E-value=4.1 Score=32.01 Aligned_cols=87 Identities=15% Similarity=0.007 Sum_probs=50.4
Q ss_pred HHHHHHHHcCCCCcCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC------------------
Q 019340 105 LRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL------------------ 166 (342)
Q Consensus 105 ~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~------------------ 166 (342)
..++.+..- .+.+..++-++.. .+-..+.+--..||...+|+.+|+..+++.++-
T Consensus 37 lL~~I~Lyy----ngEY~R~Lf~L~~---lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd 109 (242)
T 3kae_A 37 MLMSIVLYL----NGEYTRALFHLHK---LNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVD 109 (242)
T ss_dssp HHHHHHHHH----TTCHHHHHHHHHT---CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCC
T ss_pred hhhhhhhhh----cchHhHHHHHHHh---cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeec
Confidence 334544443 3566666655433 566667777777777778888888887777621
Q ss_pred -CCHHHHHH-HHHHHHcCCccCHHHHHHHHHHHHHc
Q 019340 167 -GDPAGQFN-LGISYLQAQPANAEEAVKLLYQASIA 200 (342)
Q Consensus 167 -~~~~a~~~-Lg~~~~~g~~~~~~~A~~~~~~a~~~ 200 (342)
++.+-.++ +|.++. ..++.++|+.+|.++-..
T Consensus 110 ~~DkEfFy~l~a~llt--q~g~r~EaI~y~~~Sf~~ 143 (242)
T 3kae_A 110 PGDEEFFESLLGDLCT--LSGYREEGIGHYVRSFGK 143 (242)
T ss_dssp TTCHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHH--HhcCHHHhhhHhhhhcCC
Confidence 22333322 445544 555666666666655443
No 240
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=91.39 E-value=0.65 Score=43.41 Aligned_cols=74 Identities=19% Similarity=0.131 Sum_probs=59.0
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHh
Q 019340 139 AMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLALCLH 214 (342)
Q Consensus 139 a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~ 214 (342)
.+..||.+......++.|..||.+|+.. ++..++..||.+.. ..++.-.|+-+|.|++-. ..+.|..||...+.
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~--~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~ 231 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILAS--SKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS 231 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHH--HTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHh--cccccHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Confidence 4467888888888888999999988755 67788888998888 667888888888887653 47788888887775
No 241
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=90.92 E-value=4.6 Score=35.12 Aligned_cols=133 Identities=14% Similarity=0.082 Sum_probs=71.7
Q ss_pred HHHHHHHHhhCCChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHh----CCCHHHHH
Q 019340 66 FDVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAA----RGSTLAMV 141 (342)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~----~~~~~a~~ 141 (342)
...+.+....+..|++-+|.+.++..... |.. .+++++|++++...+. .+...+-.
T Consensus 14 ~r~l~rl~~~I~~G~yYEAhQ~~Rtl~~R----------------y~~----~~~~~eAidlL~~ga~~ll~~~Q~~sa~ 73 (312)
T 2wpv_A 14 AKTLQRFENKIKAGDYYEAHQTLRTIANR----------------YVR----SKSYEHAIELISQGALSFLKAKQGGSGT 73 (312)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH----------------HHH----TTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhhccChHHHHHHHHHHHHH----------------HHH----hcCHHHHHHHHHHHHHHHHHCCCcchHH
Confidence 45666777777888888887655444322 233 3677777777766554 24444444
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHc-C-Cc----cCHHHHHHHHHHHH--HcCCHHHHHHHHHHH
Q 019340 142 DAGLMYWEMDKKEAAISLYRQAAVLGDPAGQFNLGISYLQ-A-QP----ANAEEAVKLLYQAS--IAGHVRAQYQLALCL 213 (342)
Q Consensus 142 ~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~-g-~~----~~~~~A~~~~~~a~--~~~~~~a~~~lg~~~ 213 (342)
.|+..+. +.|+++-..-+.+..-.|..++.. . .. .=..+|++|-.+.- ..|+|+-+..+|..|
T Consensus 74 DLa~llv---------ev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~ 144 (312)
T 2wpv_A 74 DLIFYLL---------EVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKL 144 (312)
T ss_dssp HHHHHHH---------HHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHH
T ss_pred HHHHHHH---------HHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHH
Confidence 4444432 223332222334444445555432 0 00 11234444444331 236777777888777
Q ss_pred hcCCCCCCCHHHHHHHHH
Q 019340 214 HRGRGVDFNLQEAARWYL 231 (342)
Q Consensus 214 ~~g~~~~~~~~~A~~~~~ 231 (342)
.. .+++.+|..+|-
T Consensus 145 ~~----e~~~~~A~~H~i 158 (312)
T 2wpv_A 145 LE----GDFVYEAERYFM 158 (312)
T ss_dssp HH----TTCHHHHHHHHH
T ss_pred hh----cCCHHHHHHHHH
Confidence 76 557777777664
No 242
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=90.45 E-value=3.3 Score=31.79 Aligned_cols=31 Identities=16% Similarity=0.013 Sum_probs=15.7
Q ss_pred CCHHHHHHHHHHHhcCCCH------HHHHHHHHHHHh
Q 019340 135 GSTLAMVDAGLMYWEMDKK------EAAISLYRQAAV 165 (342)
Q Consensus 135 ~~~~a~~~lg~~~~~~~~~------~~A~~~~~~a~~ 165 (342)
++++.|..........|++ ++-+..|++|+.
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia 47 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE 47 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH
Confidence 4555555555554444554 555555555543
No 243
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=90.20 E-value=9.5 Score=34.32 Aligned_cols=87 Identities=18% Similarity=0.060 Sum_probs=41.3
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHHHC----CC----HHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc-----CC
Q 019340 208 QLALCLHRGRGVDFNLQEAARWYLRAAEG----GY----VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC-----GH 274 (342)
Q Consensus 208 ~lg~~~~~g~~~~~~~~~A~~~~~~A~~~----~~----~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~-----~~ 274 (342)
.||.+|.. .+++.+|...+.+..+. ++ .+.+..-..+|.. .+|..++...|.+|... .+
T Consensus 104 kL~~l~~~----~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~----~~n~~k~k~~l~~a~~~~~ai~~~ 175 (394)
T 3txn_A 104 RLIALYFD----TALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHA----LSNLPKARAALTSARTTANAIYCP 175 (394)
T ss_dssp HHHHHHHH----TTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHH----hhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHH----hccHHHHHHHHHHHHhhhccCCCC
Confidence 45555554 44555555555554431 11 1223333334432 22666666666555321 22
Q ss_pred HHH----HHHHHHHhh-hcCCHHHHHHHHHHHH
Q 019340 275 GKA----QLEHGLGLF-TEGEMMKAVVYLELAT 302 (342)
Q Consensus 275 ~~a----~~~Lg~~~~-~~~~~~~A~~~~~~a~ 302 (342)
+.. ...-|.++. ..++|.+|..+|-.+.
T Consensus 176 p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 176 PKVQGALDLQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHH
Confidence 211 234555555 5666666666666654
No 244
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=88.33 E-value=3.9 Score=30.90 Aligned_cols=88 Identities=16% Similarity=0.097 Sum_probs=55.5
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcC--CHHHHHHHHHHhhhcCCHHHHHHHHH
Q 019340 222 NLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCG--HGKAQLEHGLGLFTEGEMMKAVVYLE 299 (342)
Q Consensus 222 ~~~~A~~~~~~A~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~~~~~~~~~~A~~~~~ 299 (342)
|...-+.+|-+. +-..-++.++.-+....| ..++--+.+...+... +++.++.+|.+|...|+..+|-+.+.
T Consensus 76 NlKrVi~C~~~~---n~~se~vd~ALd~lv~~~---KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~ 149 (172)
T 1wy6_A 76 NLKSVVECGVIN---NTLNEHVNKALDILVIQG---KRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLI 149 (172)
T ss_dssp CTHHHHHHHHHT---TCCCHHHHHHHHHHHHTT---CHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHh---cchHHHHHHHHHHHHHhc---cHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHH
Confidence 455555554332 111223444444433223 3444444444433333 38889999999999999999999999
Q ss_pred HHHHcCcHHHHHHHHH
Q 019340 300 LATRAGETAADHVKNV 315 (342)
Q Consensus 300 ~a~~~~~~~a~~~~~~ 315 (342)
+|++.|-.+|+.+...
T Consensus 150 ~AC~kG~kEAC~~in~ 165 (172)
T 1wy6_A 150 EACKKGEKEACNAVNT 165 (172)
T ss_dssp HHHHTTCHHHHHHHHT
T ss_pred HHHHhhhHHHHHHHHh
Confidence 9999999999987653
No 245
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=84.70 E-value=7.6 Score=29.35 Aligned_cols=60 Identities=13% Similarity=0.078 Sum_probs=33.7
Q ss_pred cCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHcCCHHHHHHHH
Q 019340 149 EMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIAGHVRAQYQLA 210 (342)
Q Consensus 149 ~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg 210 (342)
..|+.++=.+.+...+.. -+|+-++.+|.+|. ..++..+|-+.+.+|.+.|..+|+.++-
T Consensus 103 ~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~--Klg~~r~a~eLl~~AC~kG~kEAC~~in 164 (172)
T 1wy6_A 103 IQGKRDKLEEIGREILKNNEVSASILVAIANALR--RVGDERDATTLLIEACKKGEKEACNAVN 164 (172)
T ss_dssp HTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhccHhHHHHHHHHHhccCCCChHHHHHHHHHHH--HhcchhhHHHHHHHHHHhhhHHHHHHHH
Confidence 345555555555543322 23666666666666 5666666666666666666666665543
No 246
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=84.49 E-value=17 Score=32.73 Aligned_cols=90 Identities=18% Similarity=0.109 Sum_probs=58.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhC----CCH----HHHHHHHHHHHcCCccCHHHHHHHHHHHHHc-----CCHHHH
Q 019340 140 MVDAGLMYWEMDKKEAAISLYRQAAVL----GDP----AGQFNLGISYLQAQPANAEEAVKLLYQASIA-----GHVRAQ 206 (342)
Q Consensus 140 ~~~lg~~~~~~~~~~~A~~~~~~a~~~----~~~----~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~-----~~~~a~ 206 (342)
...||.+|...|++.+|.+.+.+..+. ++. +.+..-..+|. ..+|..++..+|.++... .+|..+
T Consensus 102 ~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~--~~~n~~k~k~~l~~a~~~~~ai~~~p~i~ 179 (394)
T 3txn_A 102 EARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYH--ALSNLPKARAALTSARTTANAIYCPPKVQ 179 (394)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHH--HhccHHHHHHHHHHHHhhhccCCCCHHHH
Confidence 347888888888888888888776642 332 33334445555 677888888888876431 344433
Q ss_pred H----HHHHHHh-cCCCCCCCHHHHHHHHHHHHH
Q 019340 207 Y----QLALCLH-RGRGVDFNLQEAARWYLRAAE 235 (342)
Q Consensus 207 ~----~lg~~~~-~g~~~~~~~~~A~~~~~~A~~ 235 (342)
. .-|.++. . .+|+.+|..+|-.+.+
T Consensus 180 a~i~~~~Gi~~l~~----~rdyk~A~~~F~eaf~ 209 (394)
T 3txn_A 180 GALDLQSGILHAAD----ERDFKTAFSYFYEAFE 209 (394)
T ss_dssp HHHHHHHHHHHHHT----TSCHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHh----ccCHHHHHHHHHHHHh
Confidence 2 3355555 5 6788888888888753
No 247
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=84.38 E-value=20 Score=31.10 Aligned_cols=132 Identities=15% Similarity=0.043 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHhCCC-HHHH---HHHHHHHhcCCCHHHHHHHHHHHH----hCCCHHHHHHHHHHHHcCCccCHHHHHH
Q 019340 121 LDKALDSFLKGAARGS-TLAM---VDAGLMYWEMDKKEAAISLYRQAA----VLGDPAGQFNLGISYLQAQPANAEEAVK 192 (342)
Q Consensus 121 ~~~A~~~~~~A~~~~~-~~a~---~~lg~~~~~~~~~~~A~~~~~~a~----~~~~~~a~~~Lg~~~~~g~~~~~~~A~~ 192 (342)
.++-+.-++..++.|+ -+|+ ..+..-|...+++++|+..+...+ +.+....-..|+..+. +
T Consensus 13 ~~r~l~rl~~~I~~G~yYEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llv-----------e 81 (312)
T 2wpv_A 13 LAKTLQRFENKIKAGDYYEAHQTLRTIANRYVRSKSYEHAIELISQGALSFLKAKQGGSGTDLIFYLL-----------E 81 (312)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-----------H
T ss_pred HHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHH-----------H
Confidence 3344444555555442 2332 346667777899999999987765 3466655555555544 2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhc-CCCCC---CCHHHHHHHHHHHH--HCCCHHHHHHHHHHHHcCCCCcccHHHHHHHH
Q 019340 193 LLYQASIAGHVRAQYQLALCLHR-GRGVD---FNLQEAARWYLRAA--EGGYVRAMYNTSLCYSFGEGLPLSHRQARKWM 266 (342)
Q Consensus 193 ~~~~a~~~~~~~a~~~lg~~~~~-g~~~~---~~~~~A~~~~~~A~--~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~ 266 (342)
.|.++-..-+.+....|..++.. ....+ +=..+|+.|-.+.- ..|++.-+..+|..|.. ++++.+|..+|
T Consensus 82 v~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~----e~~~~~A~~H~ 157 (312)
T 2wpv_A 82 VYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLE----GDFVYEAERYF 157 (312)
T ss_dssp HHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHH----TTCHHHHHHHH
T ss_pred HHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhh----cCCHHHHHHHH
Confidence 33332222244455556666543 11000 11345555554442 24899999999999976 33888998888
Q ss_pred H
Q 019340 267 K 267 (342)
Q Consensus 267 ~ 267 (342)
-
T Consensus 158 i 158 (312)
T 2wpv_A 158 M 158 (312)
T ss_dssp H
T ss_pred H
Confidence 5
No 248
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=83.55 E-value=14 Score=28.95 Aligned_cols=108 Identities=13% Similarity=0.093 Sum_probs=77.9
Q ss_pred CCHHHHHHHHHHHHh-CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCccCHHHHHHHHHHH
Q 019340 119 KNLDKALDSFLKGAA-RGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQFNLGISYLQAQPANAEEAVKLLYQA 197 (342)
Q Consensus 119 ~~~~~A~~~~~~A~~-~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a 197 (342)
+|++.++ |..|.- ...++....++..+.-.|++..++..+ ...+...+.+.-..||. ..+|+.+|+.++++.
T Consensus 16 ~dYdt~~--fLsa~L~~~~~eY~lL~~I~LyyngEY~R~Lf~L---~~lNT~Ts~YYk~LCy~--klKdYkkA~~~le~i 88 (242)
T 3kae_A 16 RDYETAI--FLAACLLPCKPEYRMLMSIVLYLNGEYTRALFHL---HKLNTCTSKYYESLCYK--KKKDYKKAIKSLESI 88 (242)
T ss_dssp TCHHHHH--HHHHHHC----CTHHHHHHHHHHTTCHHHHHHHH---HTCCBHHHHHHHHHHHH--HTTCHHHHHHHHHHH
T ss_pred ccccHHH--HHHHHHccCChHHHhhhhhhhhhcchHhHHHHHH---HhcchHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 5777765 333333 234455667788888899999988764 35678889999999999 889999999999998
Q ss_pred HHc-------------------CCHHHH-HHHHHHHhcCCCCCCCHHHHHHHHHHHHHCC
Q 019340 198 SIA-------------------GHVRAQ-YQLALCLHRGRGVDFNLQEAARWYLRAAEGG 237 (342)
Q Consensus 198 ~~~-------------------~~~~a~-~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~~ 237 (342)
++. ++.+-. ..+|.++.+ .++.++|+.+|.+.....
T Consensus 89 l~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq----~g~r~EaI~y~~~Sf~~~ 144 (242)
T 3kae_A 89 LEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTL----SGYREEGIGHYVRSFGKS 144 (242)
T ss_dssp HTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHC
T ss_pred HhcccccCcccccccceeeeccchHHHHHHHHHHHHHH----hcCHHHhhhHhhhhcCCc
Confidence 841 233333 456778777 678999999998886654
No 249
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=83.04 E-value=28 Score=33.38 Aligned_cols=121 Identities=13% Similarity=-0.041 Sum_probs=73.0
Q ss_pred CChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC-CCHHHHHHHHHHHhcCCCHHH
Q 019340 77 TLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR-GSTLAMVDAGLMYWEMDKKEA 155 (342)
Q Consensus 77 ~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~-~~~~a~~~lg~~~~~~~~~~~ 155 (342)
...+...|...+....+.. .+.........+.+-.. ....+...++..++.+.... .+....-..+......+|++.
T Consensus 226 ar~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~r~Alr~~d~~~ 303 (618)
T 1qsa_A 226 ARQDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWR-LMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRMALGTGDRRG 303 (618)
T ss_dssp HHHCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHT-SCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHTCHHH
T ss_pred HhcCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHH-HHHcCCChHHHHHHHhccccCCChHHHHHHHHHHHHCCCHHH
Confidence 3345555655554444332 33333333333333222 22233366777788776554 333333333334445699999
Q ss_pred HHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHcC
Q 019340 156 AISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIAG 201 (342)
Q Consensus 156 A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~~ 201 (342)
|..+|++.... ..+.+.|.+|.++. ..|+.++|..+|++++...
T Consensus 304 a~~~~~~l~~~~~~~~r~~YW~~ra~~--~~g~~~~a~~~~~~~a~~~ 349 (618)
T 1qsa_A 304 LNTWLARLPMEAKEKDEWRYWQADLLL--ERGREAEAKEILHQLMQQR 349 (618)
T ss_dssp HHHHHHHSCTTGGGSHHHHHHHHHHHH--HTTCHHHHHHHHHHHHTSC
T ss_pred HHHHHHHccccccccHhHHHHHHHHHH--HcCCHHHHHHHHHHHhcCC
Confidence 99999876543 56888999999988 7889999999999987643
No 250
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=82.37 E-value=12 Score=33.52 Aligned_cols=55 Identities=9% Similarity=-0.039 Sum_probs=32.3
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHH
Q 019340 141 VDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQA 197 (342)
Q Consensus 141 ~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a 197 (342)
..++..+...|++.+++..+++++.. -+-.++..|-.++. ..|+..+|+..|++.
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~--~~Gr~~~Al~~y~~~ 231 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYY--LSDRQSDALGAYRRV 231 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH--TTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH--HcCCHHHHHHHHHHH
Confidence 34455555566666666666665533 34556666666666 566666666666654
No 251
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=80.37 E-value=3.4 Score=37.75 Aligned_cols=92 Identities=13% Similarity=0.066 Sum_probs=52.8
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHhC----CC-HHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc----CCHHHHH-
Q 019340 138 LAMVDAGLMYWEMDKKEAAISLYRQAAVL----GD-PAGQFNLGISYLQAQPANAEEAVKLLYQASIA----GHVRAQY- 207 (342)
Q Consensus 138 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----~~-~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~- 207 (342)
.++..+|..|...||+++|.+.|.++.+. ++ .+.+..+-.++. ..+|+..+..++.++-.. +++....
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l--~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~ 209 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGF--FYNDQLYVKEKLEAVNSMIEKGGDWERRNR 209 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHH--HHTCHHHHHHHHHHHHHHHTTCCCTHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH--HhccHHHHHHHHHHHHHhhhcCCCHHHHHH
Confidence 45666777777777777777777776543 22 345555555555 556777777777765331 2333222
Q ss_pred ---HHHHHHhcCCCCCCCHHHHHHHHHHHHH
Q 019340 208 ---QLALCLHRGRGVDFNLQEAARWYLRAAE 235 (342)
Q Consensus 208 ---~lg~~~~~g~~~~~~~~~A~~~~~~A~~ 235 (342)
.-|.++.. .+++.+|..+|..+..
T Consensus 210 lk~~~gl~~l~----~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 210 YKTYYGIHCLA----VRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHHHHGGGG----TSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH----hChHHHHHHHHHHHhc
Confidence 22333333 5677777777766544
No 252
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=80.36 E-value=2.7 Score=38.36 Aligned_cols=93 Identities=19% Similarity=0.204 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC----C-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC----CCHHH
Q 019340 101 AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR----G-STLAMVDAGLMYWEMDKKEAAISLYRQAAVL----GDPAG 171 (342)
Q Consensus 101 a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~----~-~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----~~~~a 171 (342)
..++..||..|.. .||+++|++.|.+..+. + -.+.++.+-+++...+|+..+..++.++-.. +++.-
T Consensus 131 ~~~~~~la~~~~~----~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~ 206 (429)
T 4b4t_R 131 AQAWINLGEYYAQ----IGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWER 206 (429)
T ss_dssp SSCCHHHHHHHHH----HCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHH
T ss_pred HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHH
Confidence 4578889999998 68999999999998763 2 4577788888899999999999999998532 44443
Q ss_pred ----HHHHHHHHHcCCccCHHHHHHHHHHHHH
Q 019340 172 ----QFNLGISYLQAQPANAEEAVKLLYQASI 199 (342)
Q Consensus 172 ----~~~Lg~~~~~g~~~~~~~A~~~~~~a~~ 199 (342)
...-|.++. ..+++.+|..+|..+..
T Consensus 207 ~~~lk~~~gl~~l--~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 207 RNRYKTYYGIHCL--AVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHHHHHHHGGG--GTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--HhChHHHHHHHHHHHhc
Confidence 233455555 68899999999988765
No 253
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=78.72 E-value=11 Score=37.00 Aligned_cols=43 Identities=9% Similarity=-0.050 Sum_probs=37.9
Q ss_pred cHHHHHHHHHHHHHc--CCHHHHHHHHHHhhhcCCHHHHHHHHHH
Q 019340 258 SHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLEL 300 (342)
Q Consensus 258 ~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~ 300 (342)
+++.|+.+.++|+.. .....|+.|+.+|...|+++.|+--+..
T Consensus 352 ~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNS 396 (754)
T 4gns_B 352 DYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINS 396 (754)
T ss_dssp CHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhc
Confidence 899999999999876 6689999999999999999999866544
No 254
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=76.23 E-value=39 Score=29.52 Aligned_cols=27 Identities=11% Similarity=0.108 Sum_probs=17.8
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHH
Q 019340 200 AGHVRAQYQLALCLHRGRGVDFNLQEAARWY 230 (342)
Q Consensus 200 ~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~ 230 (342)
.|+|+-+..+|.+|.. .+++.+|..+|
T Consensus 133 ~Gdp~LH~~ig~~~~~----e~~~~~Ae~H~ 159 (336)
T 3lpz_A 133 AGDPELHHVVGTLYVE----EGEFEAAEKHL 159 (336)
T ss_dssp TCCHHHHHHHHHHHHH----TTCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHc----cCCHHHHHHHH
Confidence 3577777777777766 45666666665
No 255
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=75.14 E-value=42 Score=29.33 Aligned_cols=131 Identities=15% Similarity=0.123 Sum_probs=72.2
Q ss_pred CCHHHHHHHHHHHHhCCCH----HHH---HHHHHHHhcCCCHHHHHHHHHHHH----hCCCHHHHHHHHHHHHcCCccCH
Q 019340 119 KNLDKALDSFLKGAARGST----LAM---VDAGLMYWEMDKKEAAISLYRQAA----VLGDPAGQFNLGISYLQAQPANA 187 (342)
Q Consensus 119 ~~~~~A~~~~~~A~~~~~~----~a~---~~lg~~~~~~~~~~~A~~~~~~a~----~~~~~~a~~~Lg~~~~~g~~~~~ 187 (342)
...++-+.=++.-++.|+. +|+ ..+..-|...+++++|+.++-..+ +.+....-..|+..+.
T Consensus 10 ~~~~~~i~rl~~~I~~G~y~~~YEAHQ~~RTi~~Ry~~~k~y~eAidLL~~GA~~ll~~~Q~~sg~DL~~llv------- 82 (336)
T 3lpz_A 10 NKIERIIARLQRRIAEGQPEEQYEAAQETRLVAARYSKQGNWAAAVDILASVSQTLLRSGQGGSGGDLAVLLV------- 82 (336)
T ss_dssp CHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-------
T ss_pred hHHHHHHHHHHHHHhCCCCccccHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHH-------
Confidence 3456666667777777653 443 345566667788888888766644 3355555555554443
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCCC------HHHHHHHHHHHH--HCCCHHHHHHHHHHHHcCCCCcccH
Q 019340 188 EEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFN------LQEAARWYLRAA--EGGYVRAMYNTSLCYSFGEGLPLSH 259 (342)
Q Consensus 188 ~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~------~~~A~~~~~~A~--~~~~~~a~~~lg~~y~~g~g~~~~~ 259 (342)
+.|.++-..-+.+....|..++..-. +.+ .++|+.|=.+.- ..|++.-+..+|.+|... +++
T Consensus 83 ----evy~~~~~~~~~~~~~rL~~L~~~~~--~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e----~~~ 152 (336)
T 3lpz_A 83 ----DTFRQAGQRVDGASRGKLLGCLRLFQ--PGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEE----GEF 152 (336)
T ss_dssp ----HHHHHHTCCCCHHHHHHHHHHHTTSC--TTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHT----TCH
T ss_pred ----HHHHHcCCCCCHHHHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHcc----CCH
Confidence 34444322234456666666665311 111 233444444321 236777777777777653 266
Q ss_pred HHHHHHH
Q 019340 260 RQARKWM 266 (342)
Q Consensus 260 ~~A~~~~ 266 (342)
.+|..+|
T Consensus 153 ~~Ae~H~ 159 (336)
T 3lpz_A 153 EAAEKHL 159 (336)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6766665
No 256
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=74.94 E-value=17 Score=35.74 Aligned_cols=109 Identities=7% Similarity=-0.065 Sum_probs=69.8
Q ss_pred HhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC----------CCH----------HHHH
Q 019340 82 RAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR----------GST----------LAMV 141 (342)
Q Consensus 82 ~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~----------~~~----------~a~~ 141 (342)
..+...+....+..+ ....++....+... ..+..+--+|+....++++. .+. ..+.
T Consensus 266 ~~a~~~le~L~~~~p---~~~~~~~~~~i~~~-~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL~ 341 (754)
T 4gns_B 266 DFTIDYLKGLTKKDP---IHDIYYKTAMITIL-DHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLLN 341 (754)
T ss_dssp HHHHHHHHHHHHHCG---GGHHHHHHHHHHHH-TTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCC---chhHHHHHHHHHHH-HHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHHH
Confidence 445555555554422 22333333333221 01124566788888777641 121 1223
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHH
Q 019340 142 DAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQ 196 (342)
Q Consensus 142 ~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~ 196 (342)
.-+..+...|+++-|+++-++|+.. .+-..|+.|+.+|. ..+|++.|+-.+.-
T Consensus 342 ~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi--~l~d~e~ALLtLNS 396 (754)
T 4gns_B 342 IQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHI--KKEEYEKALFAINS 396 (754)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH--HTTCHHHHHHHHHH
T ss_pred HHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHH--HhccHHHHHHHHhc
Confidence 3355666789999999999999865 78999999999999 99999999877654
No 257
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=74.65 E-value=13 Score=33.30 Aligned_cols=17 Identities=18% Similarity=0.114 Sum_probs=14.1
Q ss_pred CCCHHHHHHHHHHHHHC
Q 019340 220 DFNLQEAARWYLRAAEG 236 (342)
Q Consensus 220 ~~~~~~A~~~~~~A~~~ 236 (342)
.++...|...+.+|+..
T Consensus 128 ~~~~~~a~~~l~~Al~L 144 (388)
T 2ff4_A 128 AGRFEQASRHLSAALRE 144 (388)
T ss_dssp TTCHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 56888889999998875
No 258
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=71.16 E-value=8 Score=26.21 Aligned_cols=33 Identities=24% Similarity=0.246 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHc
Q 019340 259 HRQARKWMKRAADCGHGKAQLEHGLGLFTEGEMMKAVVYLELATRA 304 (342)
Q Consensus 259 ~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~ 304 (342)
..+|+.+.++|++ ....|++++|+.+|..|++.
T Consensus 16 ~~~Ai~lv~~Ave-------------~D~~g~y~eAl~lY~~aie~ 48 (83)
T 2w2u_A 16 EEMARKYAINAVK-------------ADKEGNAEEAITNYKKAIEV 48 (83)
T ss_dssp HHHHHHHHHHHHH-------------HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-------------HHHhccHHHHHHHHHHHHHH
Confidence 4555555555543 45677778888777777653
No 259
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=70.29 E-value=8.5 Score=26.05 Aligned_cols=32 Identities=28% Similarity=0.332 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHc
Q 019340 260 RQARKWMKRAADCGHGKAQLEHGLGLFTEGEMMKAVVYLELATRA 304 (342)
Q Consensus 260 ~~A~~~~~~a~~~~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~ 304 (342)
.+|+.+.++|++ ....|++++|+.+|..|++.
T Consensus 9 ~~Ai~lv~~Ave-------------~D~~g~y~eAl~lY~~aie~ 40 (83)
T 2v6y_A 9 DMARKYAILAVK-------------ADKEGKVEDAITYYKKAIEV 40 (83)
T ss_dssp HHHHHHHHHHHH-------------HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-------------HHHhccHHHHHHHHHHHHHH
Confidence 455555555543 45577777777777777653
No 260
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=69.03 E-value=67 Score=32.90 Aligned_cols=108 Identities=12% Similarity=-0.029 Sum_probs=73.1
Q ss_pred CCCHHHHHHHHHHHHHC------CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcC---CHHHHHHHHHHhhhcCC
Q 019340 220 DFNLQEAARWYLRAAEG------GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCG---HGKAQLEHGLGLFTEGE 290 (342)
Q Consensus 220 ~~~~~~A~~~~~~A~~~------~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~~~~~~~ 290 (342)
.++.++|...|...-+. -+...+..|-..|.. ..+.++|.+.|++-.+.| +.-.+..|-..+...|+
T Consensus 140 ~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck----~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~glcK~G~ 215 (1134)
T 3spa_A 140 TDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWAR----QGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQ 215 (1134)
T ss_dssp HTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHh----CCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCC
Confidence 34677777777554322 256666666666654 238889999998887764 56777777777888886
Q ss_pred -HHHHHHHHHHHHHcC-cHHHHHHHHHHHhhcChhcHHHHHHHHHhh
Q 019340 291 -MMKAVVYLELATRAG-ETAADHVKNVILQQLSATSRDRAMLVVDSW 335 (342)
Q Consensus 291 -~~~A~~~~~~a~~~~-~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~ 335 (342)
.++|..+|+...+.| .++...+- ..+...+++...+..+++
T Consensus 216 ~~e~A~~Ll~EM~~kG~~PD~vtY~----~ll~~~eR~~vL~~Vrkv 258 (1134)
T 3spa_A 216 DAGTIERCLEQMSQEGLKLQALFTA----VLLSEEDRATVLKAVHKV 258 (1134)
T ss_dssp CHHHHHHHHHHHHHHTCCSHHHHHH----SCCCHHHHHHHHHHHGGG
T ss_pred cHHHHHHHHHHHHHcCCCCChhhcc----cccChhhHHHHHHHHHHh
Confidence 578889999988887 34444332 224677777777776666
No 261
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=68.35 E-value=5.2 Score=27.17 Aligned_cols=18 Identities=28% Similarity=0.274 Sum_probs=11.9
Q ss_pred hcCCCHHHHHHHHHHHHh
Q 019340 148 WEMDKKEAAISLYRQAAV 165 (342)
Q Consensus 148 ~~~~~~~~A~~~~~~a~~ 165 (342)
...|++++|+.+|..+++
T Consensus 30 D~~g~y~eAl~lY~~aie 47 (83)
T 2w2u_A 30 DKEGNAEEAITNYKKAIE 47 (83)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHH
Confidence 356777777777766664
No 262
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=67.73 E-value=39 Score=34.55 Aligned_cols=81 Identities=12% Similarity=-0.067 Sum_probs=38.2
Q ss_pred CCHHHHHHHHHHHHhC------CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCccC-HH
Q 019340 119 KNLDKALDSFLKGAAR------GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLG---DPAGQFNLGISYLQAQPAN-AE 188 (342)
Q Consensus 119 ~~~~~A~~~~~~A~~~------~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~~~~g~~~~-~~ 188 (342)
|+.++|..+|...-+. -+...+..|-..|...|+.++|.++|++..+.| |.-.+..|-.++- ..++ .+
T Consensus 141 G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~glc--K~G~~~e 218 (1134)
T 3spa_A 141 DQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMG--RQDQDAG 218 (1134)
T ss_dssp TCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH--HHTCCHH
T ss_pred CCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHH--hCCCcHH
Confidence 4555666555443221 144555555555555566666666665555543 2222222222222 2232 34
Q ss_pred HHHHHHHHHHHcC
Q 019340 189 EAVKLLYQASIAG 201 (342)
Q Consensus 189 ~A~~~~~~a~~~~ 201 (342)
+|..+|++..+.|
T Consensus 219 ~A~~Ll~EM~~kG 231 (1134)
T 3spa_A 219 TIERCLEQMSQEG 231 (1134)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcC
Confidence 5555555555544
No 263
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=67.14 E-value=5.6 Score=26.96 Aligned_cols=18 Identities=33% Similarity=0.344 Sum_probs=11.9
Q ss_pred hcCCCHHHHHHHHHHHHh
Q 019340 148 WEMDKKEAAISLYRQAAV 165 (342)
Q Consensus 148 ~~~~~~~~A~~~~~~a~~ 165 (342)
-..|++++|+.+|..+++
T Consensus 22 D~~g~y~eAl~lY~~aie 39 (83)
T 2v6y_A 22 DKEGKVEDAITYYKKAIE 39 (83)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHH
Confidence 356777777777766664
No 264
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=66.53 E-value=17 Score=37.74 Aligned_cols=92 Identities=11% Similarity=-0.027 Sum_probs=64.1
Q ss_pred CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC-------------------------CCHHHHHHHHHHHhcCCCHH
Q 019340 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR-------------------------GSTLAMVDAGLMYWEMDKKE 154 (342)
Q Consensus 100 ~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~-------------------------~~~~a~~~lg~~~~~~~~~~ 154 (342)
++...|.+|.+|.. .+++++|..+|++|+.. +-+..++++..++...+-++
T Consensus 841 ~~~~~yl~g~~~L~----~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~ 916 (1139)
T 4fhn_B 841 DPIAVYLKALIYLK----SKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYI 916 (1139)
T ss_dssp CHHHHHHHHHHHHH----TTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCH
T ss_pred CcHHHHHHHHHHHh----cCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHH
Confidence 66778999999999 68999999999998531 12234567777888888888
Q ss_pred HHHHHHHHHHhC---CCHH----HHHHHHHHHHcCCccCHHHHHHHHHHH
Q 019340 155 AAISLYRQAAVL---GDPA----GQFNLGISYLQAQPANAEEAVKLLYQA 197 (342)
Q Consensus 155 ~A~~~~~~a~~~---~~~~----a~~~Lg~~~~~g~~~~~~~A~~~~~~a 197 (342)
.++++.+.|++. ++.. -+.++-..+. ..+++++|...+...
T Consensus 917 ~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L--~l~~ye~Ay~aL~~~ 964 (1139)
T 4fhn_B 917 DALEFSLLADASKETDDEDLSIAITHETLKTAC--AAGKFDAAHVALMVL 964 (1139)
T ss_dssp HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHH--HHCCSGGGGHHHHHH
T ss_pred HHHHHHHHHHHhccCCChhhHHHHHHHHHHHHH--hhCCHHHHHHHHHhC
Confidence 898888888753 3332 3344444455 566777776666443
No 265
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=65.56 E-value=62 Score=29.43 Aligned_cols=92 Identities=14% Similarity=-0.046 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--C------CHHHHHHHHHHHhcCCCHHHHHHHHHHHHh----C-CC
Q 019340 102 MVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--G------STLAMVDAGLMYWEMDKKEAAISLYRQAAV----L-GD 168 (342)
Q Consensus 102 ~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~------~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~----~-~~ 168 (342)
.....|+.+|.. .|++.+|...+...... + -.+.+....++|...+|+.+|..+++++.. . .+
T Consensus 138 rl~~~La~i~e~----~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~ 213 (445)
T 4b4t_P 138 RVTKDLVEIKKE----EGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKY 213 (445)
T ss_dssp HHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCC
T ss_pred HHHHHHHHHHHH----ccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCc
Confidence 345678888888 68999999888876431 1 135667777888888999999999988642 1 33
Q ss_pred HH----HHHHHHHHHHcCCccCHHHHHHHHHHHHH
Q 019340 169 PA----GQFNLGISYLQAQPANAEEAVKLLYQASI 199 (342)
Q Consensus 169 ~~----a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~ 199 (342)
+. -....|.++. ..+++.+|..+|..+.+
T Consensus 214 ~~lk~~~~~~~~~~~~--~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 214 ESLKLEYYNLLVKISL--HKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHh
Confidence 43 3344566666 67899999999888765
No 266
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=62.80 E-value=12 Score=25.50 Aligned_cols=35 Identities=23% Similarity=0.204 Sum_probs=22.0
Q ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHc
Q 019340 257 LSHRQARKWMKRAADCGHGKAQLEHGLGLFTEGEMMKAVVYLELATRA 304 (342)
Q Consensus 257 ~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~ 304 (342)
+....|+.+..+|++ ....|++++|+.+|..|++.
T Consensus 11 ~~~~~A~~lv~~Ave-------------~D~~g~y~eAl~lY~~Aie~ 45 (86)
T 4a5x_A 11 PQSTAAATVLKRAVE-------------LDSESRYPQALVCYQEGIDL 45 (86)
T ss_dssp CHHHHHHHHHHHHHH-------------HHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH-------------HHHcCCHHHHHHHHHHHHHH
Confidence 345556666666654 25567777777777777653
No 267
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=61.56 E-value=7.4 Score=32.93 Aligned_cols=53 Identities=13% Similarity=-0.006 Sum_probs=44.4
Q ss_pred cHHHHHHHHHHHHHc--CCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCcHHHH
Q 019340 258 SHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAAD 310 (342)
Q Consensus 258 ~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~ 310 (342)
+..+|+......++. .++..-..|..++.-.|+++.|..-++....+++....
T Consensus 12 ~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~ 66 (273)
T 1zbp_A 12 QLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLP 66 (273)
T ss_dssp CHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHH
T ss_pred CHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhH
Confidence 899999999999887 45666678888888899999999999999998765443
No 268
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=59.06 E-value=58 Score=29.62 Aligned_cols=91 Identities=11% Similarity=-0.095 Sum_probs=66.4
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHhC----CC----HHHHHHHHHHHHcCCccCHHHHHHHHHHHHH-----cCCHH-
Q 019340 139 AMVDAGLMYWEMDKKEAAISLYRQAAVL----GD----PAGQFNLGISYLQAQPANAEEAVKLLYQASI-----AGHVR- 204 (342)
Q Consensus 139 a~~~lg~~~~~~~~~~~A~~~~~~a~~~----~~----~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~-----~~~~~- 204 (342)
....|+.+|...|++.+|...+...... .+ .+.+.....+|. ..+|+.+|..++.++-. ..++.
T Consensus 139 l~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l--~~~d~~~a~~~~~ki~~~~~~~~~~~~l 216 (445)
T 4b4t_P 139 VTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSI--LKGDYSQATVLSRKILKKTFKNPKYESL 216 (445)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH--HHTCHHHHHHHHHHHHHHHHHSSCCHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHHhhcccCCcHHH
Confidence 3467899999999999999999886521 22 355666667777 78899999999998632 12333
Q ss_pred ---HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Q 019340 205 ---AQYQLALCLHRGRGVDFNLQEAARWYLRAAE 235 (342)
Q Consensus 205 ---a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~ 235 (342)
-+...|.++.. .+++.+|..+|..+.+
T Consensus 217 k~~~~~~~~~~~~~----e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 217 KLEYYNLLVKISLH----KREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHHHH----HCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----hhhHHHHHHHHHHHHh
Confidence 23455666666 7799999999988865
No 269
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=58.89 E-value=44 Score=29.49 Aligned_cols=72 Identities=15% Similarity=0.064 Sum_probs=50.9
Q ss_pred HHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC-------CCHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 019340 92 NDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR-------GSTLAMVDAGLMYWEMDKKEAAISLYRQAA 164 (342)
Q Consensus 92 ~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~-------~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~ 164 (342)
++...-...++++-+||.+-..-- . .....++.+|.+|+.. .+..-+.-+|-.|.+.+++.+|++.+-.|.
T Consensus 246 yD~GhL~rYPmALgnLgDLEe~~p-t-~gr~~~l~L~~~AI~sa~~yY~n~HvYPYtylgGy~yR~~~~reAl~~WA~Aa 323 (472)
T 3re2_A 246 YDMGHIKTYPMAIANLGDLEEISP-T-PGRPPAEELFKEAITVAKREYSDHHIYPYTYLGGYYYRKKKYYEAIASWVDAG 323 (472)
T ss_dssp HHTTTTTTCHHHHHHHHHHHHHSC-C-TTSCCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HhccchhhCchhhcchhhHHhcCC-C-CCCCCHHHHHHHHHHHHHHHhccCCccchhhhhhhhhhcchHHHHHHHHHHHH
Confidence 444444567899999998877521 1 2223388889988864 355566667778889999999999988876
Q ss_pred h
Q 019340 165 V 165 (342)
Q Consensus 165 ~ 165 (342)
+
T Consensus 324 ~ 324 (472)
T 3re2_A 324 Y 324 (472)
T ss_dssp H
T ss_pred H
Confidence 4
No 270
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=58.55 E-value=21 Score=24.62 Aligned_cols=33 Identities=24% Similarity=0.240 Sum_probs=18.7
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHhhhcCCHHHHHHHHHHHHH
Q 019340 258 SHRQARKWMKRAADCGHGKAQLEHGLGLFTEGEMMKAVVYLELATR 303 (342)
Q Consensus 258 ~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~ 303 (342)
-..+|+.++++|++ ....|++++|+.+|..|++
T Consensus 11 ~l~~Ai~lv~~Ave-------------~D~~g~y~eAl~~Y~~Aie 43 (93)
T 1wfd_A 11 DSTAAVAVLKRAVE-------------LDAESRYQQALVCYQEGID 43 (93)
T ss_dssp HHHHHHHHHHHHHH-------------HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-------------HHHhCCHHHHHHHHHHHHH
Confidence 34556666666544 3445666666666666654
No 271
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=54.96 E-value=15 Score=29.49 Aligned_cols=28 Identities=18% Similarity=0.167 Sum_probs=18.6
Q ss_pred HHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc
Q 019340 241 AMYNTSLCYSFGEGLPLSHRQARKWMKRAADC 272 (342)
Q Consensus 241 a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~ 272 (342)
-.|.+|.++.. ..++.+|..++..|...
T Consensus 16 Y~YYlGr~~~~----~~~y~~A~~~L~~A~~~ 43 (203)
T 3t5x_A 16 YKYYVGRKAMF----DSDFKQAEEYLSFAFEH 43 (203)
T ss_dssp HHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH----HhCHHHHHHHHHHHHHH
Confidence 45667777654 33777777777777765
No 272
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=54.02 E-value=13 Score=25.71 Aligned_cols=33 Identities=9% Similarity=0.098 Sum_probs=21.5
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 019340 120 NLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAV 165 (342)
Q Consensus 120 ~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~ 165 (342)
-.++|+.++.+|++. ...|++++|+.+|..+++
T Consensus 11 ~l~~Ai~lv~~Ave~-------------D~~g~y~eAl~~Y~~Aie 43 (93)
T 1wfd_A 11 DSTAAVAVLKRAVEL-------------DAESRYQQALVCYQEGID 43 (93)
T ss_dssp HHHHHHHHHHHHHHH-------------HHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-------------HHhCCHHHHHHHHHHHHH
Confidence 355677777766552 356777777777777664
No 273
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=53.77 E-value=65 Score=29.04 Aligned_cols=72 Identities=14% Similarity=0.017 Sum_probs=51.2
Q ss_pred HHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC-------CCHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 019340 92 NDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR-------GSTLAMVDAGLMYWEMDKKEAAISLYRQAA 164 (342)
Q Consensus 92 ~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~-------~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~ 164 (342)
++...-...++++-+||.+-..-- .. ....++.+|.+|+.. .+..-+.-+|-.|.+.+++.+|+..+-.|.
T Consensus 268 yd~GhL~rYPmALgnLgDLEe~~p-t~-gr~~~~~L~~~AI~sa~~~Y~n~HvYPYtYlgGy~yR~~~~reAl~~WA~Aa 345 (550)
T 3u84_A 268 YDLGHLERYPMALGNLADLEELEP-TP-GRPDPLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTA 345 (550)
T ss_dssp HHTTTTTTCHHHHHHHHHHHHHSC-CT-TCCCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HhccchhhCchhhcchhhHhhcCC-CC-CCCCHHHHHHHHHHHHHHHhccCCccceeecchhhhhcchHHHHHHHHHHHH
Confidence 444444567899999998877521 11 122388888888763 355666667778889999999999998876
Q ss_pred h
Q 019340 165 V 165 (342)
Q Consensus 165 ~ 165 (342)
+
T Consensus 346 ~ 346 (550)
T 3u84_A 346 T 346 (550)
T ss_dssp H
T ss_pred H
Confidence 4
No 274
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=53.14 E-value=20 Score=25.99 Aligned_cols=33 Identities=18% Similarity=0.157 Sum_probs=19.7
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHhhhcCCHHHHHHHHHHHHH
Q 019340 258 SHRQARKWMKRAADCGHGKAQLEHGLGLFTEGEMMKAVVYLELATR 303 (342)
Q Consensus 258 ~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~ 303 (342)
...+|+.++.+|++ ....+++++|+.+|..|++
T Consensus 14 ~l~kAi~lv~~Ave-------------~D~ag~y~eAl~lY~~Aie 46 (117)
T 2cpt_A 14 NLQKAIDLASKAAQ-------------EDKAGNYEEALQLYQHAVQ 46 (117)
T ss_dssp HHHHHHHHHHHHHH-------------HHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-------------HHHccCHHHHHHHHHHHHH
Confidence 35566666666653 3445666666666666655
No 275
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=50.78 E-value=20 Score=24.38 Aligned_cols=32 Identities=9% Similarity=0.030 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 019340 121 LDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAV 165 (342)
Q Consensus 121 ~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~ 165 (342)
-..|+.+..+|++. ...|++++|+.+|..+++
T Consensus 13 ~~~A~~lv~~Ave~-------------D~~g~y~eAl~lY~~Aie 44 (86)
T 4a5x_A 13 STAAATVLKRAVEL-------------DSESRYPQALVCYQEGID 44 (86)
T ss_dssp HHHHHHHHHHHHHH-------------HHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-------------HHcCCHHHHHHHHHHHHH
Confidence 34555555555542 345667777776666654
No 276
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=50.65 E-value=37 Score=29.94 Aligned_cols=64 Identities=16% Similarity=0.002 Sum_probs=39.5
Q ss_pred CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH-------cCCHHHHHHHHHHhhhcCCHHHHHHHHHHHHH
Q 019340 238 YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAAD-------CGHGKAQLEHGLGLFTEGEMMKAVVYLELATR 303 (342)
Q Consensus 238 ~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~-------~~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~ 303 (342)
+|.|+-+||.+-..-. ......++..|.+|+. ..|.-.+..+|-.+++.+++.+|++++..|.+
T Consensus 254 YPmALgnLgDLEe~~p--t~gr~~~l~L~~~AI~sa~~yY~n~HvYPYtylgGy~yR~~~~reAl~~WA~Aa~ 324 (472)
T 3re2_A 254 YPMAIANLGDLEEISP--TPGRPPAEELFKEAITVAKREYSDHHIYPYTYLGGYYYRKKKYYEAIASWVDAGY 324 (472)
T ss_dssp CHHHHHHHHHHHHHSC--CTTSCCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CchhhcchhhHHhcCC--CCCCCCHHHHHHHHHHHHHHHhccCCccchhhhhhhhhhcchHHHHHHHHHHHHH
Confidence 5667777777654321 1122336666666654 23455666677777778888888887777754
No 277
>3o10_A Sacsin; all-helical domain, homodimerization, chaperone; 1.90A {Homo sapiens}
Probab=49.42 E-value=43 Score=25.04 Aligned_cols=50 Identities=16% Similarity=0.012 Sum_probs=28.1
Q ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCCHHHHH
Q 019340 220 DFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQL 279 (342)
Q Consensus 220 ~~~~~~A~~~~~~A~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~ 279 (342)
.+|.+++..|+++|. .....+..... .| +++.|.-..++|++.--...+.
T Consensus 3 ~~~~ee~~~wl~~A~------~dl~~A~~~~~-~g---~y~~a~F~aqQA~Ek~lKa~L~ 52 (141)
T 3o10_A 3 VGNPVEARRWLRQAR------ANFSAARNDLH-KN---ANEWVCFKCYLSTKLALIAADY 52 (141)
T ss_dssp CCCHHHHHHHHHHHH------HHHHHHGGGTT-TT---CHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHH------hhhhHHhhHHh-hC---ccceEeeehhHHHHHHHHHHHH
Confidence 457778888887753 22333333322 23 7777777777777654333333
No 278
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=46.69 E-value=84 Score=28.33 Aligned_cols=73 Identities=14% Similarity=0.014 Sum_probs=50.9
Q ss_pred HHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC-------CCHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 019340 91 WNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR-------GSTLAMVDAGLMYWEMDKKEAAISLYRQA 163 (342)
Q Consensus 91 ~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~-------~~~~a~~~lg~~~~~~~~~~~A~~~~~~a 163 (342)
.++...-...++++-+||.+-...- ....+.++.+|.+|+.. .+..-+.-+|-.+.+.+++.+|+..+-.+
T Consensus 252 Lyd~Ghl~~YPmALgnLgDLEei~p--t~grp~~~~Lf~~AI~~ar~~Y~~~hvYPYtYlgG~~~R~~~~~eAl~~wa~a 329 (489)
T 4gq4_A 252 LYDLGHLERYPMALGNLADLEELEP--TPGRPDPLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADT 329 (489)
T ss_dssp HHHHTTTTTCHHHHHHHHHHHHHSC--CTTSCCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHhccchhhcchhhhcccCHhhcCC--CCCCCCHHHHHHHHHHHHHHhcccCcccceeecchHHHHhhhHHHHHHHhhhh
Confidence 4555555668999999999877632 12233577889988873 35555556666777788999999998887
Q ss_pred Hh
Q 019340 164 AV 165 (342)
Q Consensus 164 ~~ 165 (342)
++
T Consensus 330 a~ 331 (489)
T 4gq4_A 330 AT 331 (489)
T ss_dssp HH
T ss_pred hh
Confidence 63
No 279
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=45.06 E-value=28 Score=25.22 Aligned_cols=32 Identities=34% Similarity=0.348 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 019340 121 LDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAV 165 (342)
Q Consensus 121 ~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~ 165 (342)
..+|+.++.+|++ .-..+++++|+.+|..+++
T Consensus 15 l~kAi~lv~~Ave-------------~D~ag~y~eAl~lY~~Aie 46 (117)
T 2cpt_A 15 LQKAIDLASKAAQ-------------EDKAGNYEEALQLYQHAVQ 46 (117)
T ss_dssp HHHHHHHHHHHHH-------------HHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-------------HHHccCHHHHHHHHHHHHH
Confidence 4456666666543 1234666666666666654
No 280
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=43.73 E-value=20 Score=25.96 Aligned_cols=32 Identities=31% Similarity=0.368 Sum_probs=18.8
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 019340 120 NLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAA 164 (342)
Q Consensus 120 ~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~ 164 (342)
.+++|+.+..+|+..+ +.|+.++|+.+|++.+
T Consensus 18 ~h~~AF~~Is~AL~~D-------------E~g~k~~Al~lYk~GI 49 (116)
T 2dl1_A 18 AYKKAFLFVNKGLNTD-------------ELGQKEEAKNYYKQGI 49 (116)
T ss_dssp HHHHHHHHHHHHHHHH-------------HHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhh-------------hcCCHHHHHHHHHHHH
Confidence 3455666666665532 2266777777766655
No 281
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=42.89 E-value=55 Score=29.51 Aligned_cols=64 Identities=8% Similarity=-0.098 Sum_probs=31.7
Q ss_pred CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH-------cCCHHHHHHHHHHhhhcCCHHHHHHHHHHHHH
Q 019340 238 YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAAD-------CGHGKAQLEHGLGLFTEGEMMKAVVYLELATR 303 (342)
Q Consensus 238 ~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~-------~~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~ 303 (342)
++.|+-+||.+-..-. ......++..|.+|+. ..|.-.+..+|-.|++.+++.+|+.++..|.+
T Consensus 276 YPmALgnLgDLEe~~p--t~gr~~~~~L~~~AI~sa~~~Y~n~HvYPYtYlgGy~yR~~~~reAl~~WA~Aa~ 346 (550)
T 3u84_A 276 YPMALGNLADLEELEP--TPGRPDPLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTAT 346 (550)
T ss_dssp CHHHHHHHHHHHHHSC--CTTCCCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CchhhcchhhHhhcCC--CCCCCCHHHHHHHHHHHHHHHhccCCccceeecchhhhhcchHHHHHHHHHHHHH
Confidence 4555555555543211 1111224455555543 23444555555566666666666666666543
No 282
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=41.37 E-value=43 Score=23.07 Aligned_cols=26 Identities=27% Similarity=0.123 Sum_probs=19.1
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHh
Q 019340 140 MVDAGLMYWEMDKKEAAISLYRQAAV 165 (342)
Q Consensus 140 ~~~lg~~~~~~~~~~~A~~~~~~a~~ 165 (342)
+-..+..+...|+|++||++.++|+.
T Consensus 18 ~~RrAe~ll~~gkydeAIech~kAa~ 43 (97)
T 2crb_A 18 QSRRADRLLAAGKYEEAISCHRKATT 43 (97)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhhHHHHHHhcCCHHHHHHHHHHHHH
Confidence 34566667778889999888888763
No 283
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=41.36 E-value=1.3e+02 Score=23.90 Aligned_cols=28 Identities=11% Similarity=0.057 Sum_probs=15.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 019340 186 NAEEAVKLLYQASIAGHVRAQYQLALCL 213 (342)
Q Consensus 186 ~~~~A~~~~~~a~~~~~~~a~~~lg~~~ 213 (342)
-...|+..++-.-..|.|++...|+.+-
T Consensus 62 Al~~a~aa~~a~~~iG~PE~~i~Laqav 89 (201)
T 3bge_A 62 AMQVALAAWDCFTRVGAYEGERAIAQAI 89 (201)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCcHHHHHHHHHH
Confidence 3444555555555556666666665443
No 284
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=41.27 E-value=18 Score=24.15 Aligned_cols=26 Identities=15% Similarity=0.153 Sum_probs=19.9
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHh
Q 019340 140 MVDAGLMYWEMDKKEAAISLYRQAAV 165 (342)
Q Consensus 140 ~~~lg~~~~~~~~~~~A~~~~~~a~~ 165 (342)
...+|+-|...|+|+.|+.+|+.+++
T Consensus 15 ~~k~ARe~Al~GnYdta~~yY~g~~~ 40 (78)
T 2rpa_A 15 NVKLAREYALLGNYDSAMVYYQGVLD 40 (78)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 35677777778888888888888765
No 285
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=41.21 E-value=69 Score=32.38 Aligned_cols=29 Identities=14% Similarity=0.155 Sum_probs=19.8
Q ss_pred CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHH
Q 019340 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGA 132 (342)
Q Consensus 100 ~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~ 132 (342)
++...|.+|.+|.. .|++++|..+|++|+
T Consensus 839 t~~~~yv~gr~~L~----~ge~~~A~~~F~kAA 867 (950)
T 4gq2_M 839 DPIAVYLKALIYLK----SKEAVKAVRCFKTTS 867 (950)
T ss_dssp SHHHHHHHHHHHHH----TTCHHHHHHHHHTCC
T ss_pred ChHHHHHHHHHHHH----cCCHHHHHHHHHHHh
Confidence 45566777777777 467777777777765
No 286
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=39.53 E-value=1.2e+02 Score=22.94 Aligned_cols=43 Identities=9% Similarity=-0.100 Sum_probs=32.1
Q ss_pred HHHHHHHHHhC--C--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC
Q 019340 124 ALDSFLKGAAR--G--STLAMVDAGLMYWEMDKKEAAISLYRQAAVL 166 (342)
Q Consensus 124 A~~~~~~A~~~--~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~ 166 (342)
+.+.|...... | .+.-+..-|..+...|++++|...|+.+++.
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~ 130 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQN 130 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 45555555554 2 5566667888888899999999999998875
No 287
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=38.57 E-value=47 Score=22.23 Aligned_cols=34 Identities=15% Similarity=-0.007 Sum_probs=24.4
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHc
Q 019340 258 SHRQARKWMKRAADCGHGKAQLEHGLGLFTEGEMMKAVVYLELATRA 304 (342)
Q Consensus 258 ~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~ 304 (342)
...+|+.+..+|++ ....|++++|+.+|..|++.
T Consensus 9 ~l~~A~~l~~~Av~-------------~D~~g~y~eAl~~Y~~aie~ 42 (85)
T 2v6x_A 9 FLTKGIELVQKAID-------------LDTATQYEEAYTAYYNGLDY 42 (85)
T ss_dssp HHHHHHHHHHHHHH-------------HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-------------HHHcCCHHHHHHHHHHHHHH
Confidence 45677777777753 45678888888888888763
No 288
>3o10_A Sacsin; all-helical domain, homodimerization, chaperone; 1.90A {Homo sapiens}
Probab=37.53 E-value=74 Score=23.68 Aligned_cols=44 Identities=14% Similarity=-0.110 Sum_probs=31.2
Q ss_pred CcCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC
Q 019340 117 VRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL 166 (342)
Q Consensus 117 ~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~ 166 (342)
..+|.+++..|+++|.. -+..+......|+++.|.-..++|++.
T Consensus 2 ~~~~~ee~~~wl~~A~~------dl~~A~~~~~~g~y~~a~F~aqQA~Ek 45 (141)
T 3o10_A 2 SVGNPVEARRWLRQARA------NFSAARNDLHKNANEWVCFKCYLSTKL 45 (141)
T ss_dssp CCCCHHHHHHHHHHHHH------HHHHHGGGTTTTCHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHh------hhhHHhhHHhhCccceEeeehhHHHHH
Confidence 34688888888888654 244555666678888888777777764
No 289
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=35.85 E-value=1.2e+02 Score=21.82 Aligned_cols=16 Identities=19% Similarity=0.171 Sum_probs=11.4
Q ss_pred cCCHHHHHHHHHHHHH
Q 019340 288 EGEMMKAVVYLELATR 303 (342)
Q Consensus 288 ~~~~~~A~~~~~~a~~ 303 (342)
.|+.++|+.+|++++.
T Consensus 35 ~g~k~~Al~lYk~GI~ 50 (116)
T 2dl1_A 35 LGQKEEAKNYYKQGIG 50 (116)
T ss_dssp HTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH
Confidence 4777777777777753
No 290
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=35.11 E-value=3e+02 Score=26.15 Aligned_cols=116 Identities=15% Similarity=0.036 Sum_probs=75.0
Q ss_pred CccCHHHHHHHHHHHHHcC--CHH-HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC-CCH-HHHHHHHHHHHcCCCCcc
Q 019340 183 QPANAEEAVKLLYQASIAG--HVR-AQYQLALCLHRGRGVDFNLQEAARWYLRAAEG-GYV-RAMYNTSLCYSFGEGLPL 257 (342)
Q Consensus 183 ~~~~~~~A~~~~~~a~~~~--~~~-a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~-~~~-~a~~~lg~~y~~g~g~~~ 257 (342)
...+++.|...|.+..... +.. .....+.+-.... ..+...++..|+.++... .+. ...+..+..+ . .+
T Consensus 226 ar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~e~~~r~Al-r----~~ 299 (618)
T 1qsa_A 226 ARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLM-GNDVTDEQAKWRDDAIMRSQSTSLIERRVRMAL-G----TG 299 (618)
T ss_dssp HHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSC-STTCCHHHHHHHHHHHHTCCCHHHHHHHHHHHH-H----HT
T ss_pred HhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHH-HcCCChHHHHHHHhccccCCChHHHHHHHHHHH-H----CC
Confidence 3558888988888765432 222 2222222221111 123267888888876554 222 2344444444 3 23
Q ss_pred cHHHHHHHHHHHHHc--CCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHc
Q 019340 258 SHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRA 304 (342)
Q Consensus 258 ~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~ 304 (342)
|...|..||...... ....+.|++|-.+...|+.++|..+|+.+...
T Consensus 300 d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~ 348 (618)
T 1qsa_A 300 DRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ 348 (618)
T ss_dssp CHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred CHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC
Confidence 999999999886543 45788999999999999999999999998763
No 291
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=34.50 E-value=91 Score=28.12 Aligned_cols=28 Identities=4% Similarity=-0.255 Sum_probs=13.3
Q ss_pred HHHHHHHHHHhhhcCCHHHHHHHHHHHH
Q 019340 275 GKAQLEHGLGLFTEGEMMKAVVYLELAT 302 (342)
Q Consensus 275 ~~a~~~Lg~~~~~~~~~~~A~~~~~~a~ 302 (342)
.-.+..+|-.++..+++.+|+.++..|.
T Consensus 303 vYPYtYlgG~~~R~~~~~eAl~~wa~aa 330 (489)
T 4gq4_A 303 IYPYMYLAGYHCRNRNVREALQAWADTA 330 (489)
T ss_dssp SHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccceeecchHHHHhhhHHHHHHHhhhhh
Confidence 3334444444444555555555555543
No 292
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=33.14 E-value=87 Score=25.03 Aligned_cols=23 Identities=26% Similarity=0.193 Sum_probs=11.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Q 019340 190 AVKLLYQASIAGHVRAQYQLALC 212 (342)
Q Consensus 190 A~~~~~~a~~~~~~~a~~~lg~~ 212 (342)
|+..++-.-..|.|++...|+.+
T Consensus 72 a~aa~~a~~~iG~PE~~i~Laqa 94 (204)
T 2r9g_A 72 TVNAVLAAEKLGLPEARIPLADV 94 (204)
T ss_dssp HHHHHHHHHHHCTTTTHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHH
Confidence 33444444444666655555544
No 293
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=32.94 E-value=1.4e+02 Score=24.00 Aligned_cols=27 Identities=7% Similarity=-0.091 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 019340 187 AEEAVKLLYQASIAGHVRAQYQLALCL 213 (342)
Q Consensus 187 ~~~A~~~~~~a~~~~~~~a~~~lg~~~ 213 (342)
...|+..++-.-..|.|++...|+.+-
T Consensus 91 l~~a~aa~~a~~~iG~PE~~i~Laqav 117 (213)
T 3ctd_A 91 IVVVQSCCDAFDRVGFPEGLFFLSQAS 117 (213)
T ss_dssp HHHHHHHHHHHHHHCTTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 344555555555556666666665443
No 294
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=32.79 E-value=64 Score=21.55 Aligned_cols=17 Identities=18% Similarity=0.145 Sum_probs=10.8
Q ss_pred cCCCHHHHHHHHHHHHh
Q 019340 149 EMDKKEAAISLYRQAAV 165 (342)
Q Consensus 149 ~~~~~~~A~~~~~~a~~ 165 (342)
..|++++|+.+|..+++
T Consensus 25 ~~g~y~eAl~~Y~~aie 41 (85)
T 2v6x_A 25 TATQYEEAYTAYYNGLD 41 (85)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 45666666666666654
No 295
>2ymb_A MITD1, MIT domain-containing protein 1; protein transport, membrane, PLD; 3.40A {Homo sapiens}
Probab=32.40 E-value=9.4 Score=31.98 Aligned_cols=42 Identities=14% Similarity=0.134 Sum_probs=0.0
Q ss_pred HcCCCCcCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC
Q 019340 112 KHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL 166 (342)
Q Consensus 112 ~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~ 166 (342)
..|.|-......|+.+..+|++.+ ..|++++|+.+|+.+++.
T Consensus 11 ks~~g~dp~~~~Ai~lv~~AVe~D-------------~~g~y~eAl~lY~eaIe~ 52 (257)
T 2ymb_A 11 KSGLRQDPQSTAAATVLKRAVELD-------------SESRYPQALVCYQEGIDL 52 (257)
T ss_dssp -------------------------------------------------------
T ss_pred hccCCCChhHHHHHHHHHHHHHHH-------------HcCCHHHHHHHHHHHHHH
Confidence 334555667777888888887754 457777777777777653
No 296
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=31.58 E-value=1.3e+02 Score=20.81 Aligned_cols=46 Identities=17% Similarity=0.210 Sum_probs=31.3
Q ss_pred CcCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC-CCHHH
Q 019340 117 VRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL-GDPAG 171 (342)
Q Consensus 117 ~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-~~~~a 171 (342)
...|.+.-..+|.+-+. +|..+...|+++.|+.+|-+|+.. +.|..
T Consensus 9 ~~~d~e~~e~~Fl~eV~---------lGE~L~~~g~~e~av~Hf~nAl~Vc~qP~~ 55 (95)
T 1om2_A 9 DLKDAEAVQKFFLEEIQ---------LGEELLAQGDYEKGVDHLTNAIAVCGQPQQ 55 (95)
T ss_dssp CSSSHHHHHHHHHHHHH---------HHHHHHHHTCHHHHHHHHHHHHHHHSCHHH
T ss_pred CCCCHHHHHHHHHHHHH---------HHHHHHHCCCHHHHHHHHHHHHHHcCCHHH
Confidence 45566666777776544 778877888888888877776653 44443
No 297
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=31.31 E-value=1.8e+02 Score=22.35 Aligned_cols=43 Identities=9% Similarity=0.037 Sum_probs=31.8
Q ss_pred HHHHHHHHHhC----CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC
Q 019340 124 ALDSFLKGAAR----GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL 166 (342)
Q Consensus 124 A~~~~~~A~~~----~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~ 166 (342)
+.++|...... ..+.-+...|..+...|++.+|...|+.+++.
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~ 125 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQ 125 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 34445554443 25666677888899999999999999999876
No 298
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=31.27 E-value=2.1e+02 Score=23.21 Aligned_cols=43 Identities=14% Similarity=0.128 Sum_probs=31.8
Q ss_pred HHHHHHHHHhC--C--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC
Q 019340 124 ALDSFLKGAAR--G--STLAMVDAGLMYWEMDKKEAAISLYRQAAVL 166 (342)
Q Consensus 124 A~~~~~~A~~~--~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~ 166 (342)
+.++|...... | .+.-+...|..+...|++.+|...|+.+++.
T Consensus 133 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~ 179 (223)
T 4aez_C 133 PVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRM 179 (223)
T ss_dssp HHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 44455555443 2 5666677888999999999999999998864
No 299
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=29.71 E-value=49 Score=19.53 Aligned_cols=39 Identities=33% Similarity=0.510 Sum_probs=31.6
Q ss_pred CCCCCCcHHHHHHHHhhCCChhHHhhHHHHHHHHHHhCc
Q 019340 59 HDFASLPFDVLNKIAASFTLPQLRAASLVCKSWNDALRP 97 (342)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 97 (342)
..+..+|.+++..+...+...+......+|+.|.....+
T Consensus 7 ~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~~ 45 (53)
T 1fs1_A 7 VSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASD 45 (53)
T ss_dssp --CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTC
T ss_pred CCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Confidence 356788999999999999888888888888888877643
No 300
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=29.52 E-value=1.7e+02 Score=23.41 Aligned_cols=48 Identities=17% Similarity=0.043 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHHHHc----CCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHcC
Q 019340 258 SHRQARKWMKRAADC----GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAG 305 (342)
Q Consensus 258 ~~~~A~~~~~~a~~~----~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~ 305 (342)
+...+...|.-.... ..+.-+...+..+...|++.+|...|+++++.+
T Consensus 94 ~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~ 145 (202)
T 3esl_A 94 NFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENN 145 (202)
T ss_dssp CHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred ccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
No 301
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=29.14 E-value=1.6e+02 Score=21.17 Aligned_cols=35 Identities=9% Similarity=-0.068 Sum_probs=18.8
Q ss_pred HHHHHHhCCCHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 019340 127 SFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQ 162 (342)
Q Consensus 127 ~~~~A~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~ 162 (342)
...+.+..|.+......+..... ++.++|+.|+-.
T Consensus 11 ~v~~l~~MGFp~~~~~kAl~~~g-~~~e~amewL~~ 45 (118)
T 4ae4_A 11 CVETVVNMGYSYECVLRAMKAAG-ANIEQILDYLFA 45 (118)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHC-SCHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHC-cCHHHHHHHHHH
Confidence 34444555655555555543333 366666666654
No 302
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=28.51 E-value=82 Score=29.35 Aligned_cols=61 Identities=8% Similarity=-0.064 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHhCC----C---HHHHHHHHHHHHcCCccCHHHHHHHHHHHHH
Q 019340 137 TLAMVDAGLMYWEMDKKEAAISLYRQAAVLG----D---PAGQFNLGISYLQAQPANAEEAVKLLYQASI 199 (342)
Q Consensus 137 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~----~---~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~ 199 (342)
+..+..+=+.|...+.+++|..+..++.-+. + ..-+|.+|.++. ...+|.+|..++..|+.
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a--~q~~Y~eA~~~L~~A~r 298 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINA--IQLDYSTANEYIIAAIR 298 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHH--HhccHHHHHHHHHHHHH
Confidence 4455677788889999999999999986431 2 345677899998 89999999999999986
No 303
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=26.72 E-value=2.8e+02 Score=23.11 Aligned_cols=47 Identities=15% Similarity=0.036 Sum_probs=30.1
Q ss_pred cHHHHHHHHHHHHHc-------CCHHH---HHHHHHHhhh-cCCHHHHHHHHHHHHHc
Q 019340 258 SHRQARKWMKRAADC-------GHGKA---QLEHGLGLFT-EGEMMKAVVYLELATRA 304 (342)
Q Consensus 258 ~~~~A~~~~~~a~~~-------~~~~a---~~~Lg~~~~~-~~~~~~A~~~~~~a~~~ 304 (342)
-.+.|...|+.|.+. -||-. ..|....|+. .+++++|+...+.|.+-
T Consensus 150 ~~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~ 207 (260)
T 1o9d_A 150 AAESTLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDE 207 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 356788888888653 23322 1344443443 79999999999888743
No 304
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=26.57 E-value=1.5e+02 Score=22.49 Aligned_cols=44 Identities=11% Similarity=0.075 Sum_probs=33.2
Q ss_pred HHHHHHHHHHc----CCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHcC
Q 019340 262 ARKWMKRAADC----GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAG 305 (342)
Q Consensus 262 A~~~~~~a~~~----~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~ 305 (342)
+...|.-.... ..+.-+...+..+...|++++|...|+++++.+
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~ 131 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQ 131 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 44555554443 346666788888899999999999999999874
No 305
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=26.43 E-value=1.4e+02 Score=19.50 Aligned_cols=25 Identities=12% Similarity=0.105 Sum_probs=15.3
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHhC
Q 019340 142 DAGLMYWEMDKKEAAISLYRQAAVL 166 (342)
Q Consensus 142 ~lg~~~~~~~~~~~A~~~~~~a~~~ 166 (342)
.+|..+...|++++|+.+|-+|+..
T Consensus 22 ~~GE~L~~~g~~~~~~~hf~nAl~V 46 (73)
T 3ax2_A 22 QLGEELLAQGDYEKGVDHLTNAIAV 46 (73)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 3666666666666666666655543
No 306
>2ymb_A MITD1, MIT domain-containing protein 1; protein transport, membrane, PLD; 3.40A {Homo sapiens}
Probab=24.27 E-value=16 Score=30.58 Aligned_cols=39 Identities=21% Similarity=0.190 Sum_probs=0.0
Q ss_pred CCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHhhhcCCHHHHHHHHHHHHH
Q 019340 252 GEGLPLSHRQARKWMKRAADCGHGKAQLEHGLGLFTEGEMMKAVVYLELATR 303 (342)
Q Consensus 252 g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~ 303 (342)
|.|-.+....|+..+++|++.+ ..|++++|+.+|+.|++
T Consensus 13 ~~g~dp~~~~Ai~lv~~AVe~D-------------~~g~y~eAl~lY~eaIe 51 (257)
T 2ymb_A 13 GLRQDPQSTAAATVLKRAVELD-------------SESRYPQALVCYQEGID 51 (257)
T ss_dssp ----------------------------------------------------
T ss_pred cCCCChhHHHHHHHHHHHHHHH-------------HcCCHHHHHHHHHHHHH
Confidence 3444556666666666666533 34555555555555554
No 307
>3eab_A Spastin; spastin, MIT, ESCRT, alternative splicing, ATP- binding, cytoplasm, disease mutation, hereditary spastic paraplegia, nucleotide-binding; 2.50A {Homo sapiens}
Probab=23.44 E-value=93 Score=21.24 Aligned_cols=15 Identities=20% Similarity=0.308 Sum_probs=11.6
Q ss_pred CCHHHHHHHHHHHHH
Q 019340 289 GEMMKAVVYLELATR 303 (342)
Q Consensus 289 ~~~~~A~~~~~~a~~ 303 (342)
|+.++|+.||++++.
T Consensus 33 G~k~~A~~~YkkGi~ 47 (89)
T 3eab_A 33 GQKEQAVEWYKKGIE 47 (89)
T ss_dssp SSGGGSHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 778888888888763
No 308
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=23.41 E-value=1.4e+02 Score=22.95 Aligned_cols=44 Identities=5% Similarity=-0.078 Sum_probs=32.8
Q ss_pred HHHHHHHHHHc----CCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHcC
Q 019340 262 ARKWMKRAADC----GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAG 305 (342)
Q Consensus 262 A~~~~~~a~~~----~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~ 305 (342)
+...|.-.... ..+.-+...+..+...|++.+|...|++++..+
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~ 126 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQK 126 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 33444444443 346666788888899999999999999999875
No 309
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=22.69 E-value=96 Score=31.36 Aligned_cols=31 Identities=13% Similarity=0.327 Sum_probs=27.4
Q ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 019340 135 GSTLAMVDAGLMYWEMDKKEAAISLYRQAAV 165 (342)
Q Consensus 135 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~ 165 (342)
.++-..|-+|++|...|++++|..+|++|+.
T Consensus 838 ~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~ 868 (950)
T 4gq2_M 838 SDPIAVYLKALIYLKSKEAVKAVRCFKTTSL 868 (950)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHTCCC
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Confidence 3566779999999999999999999999873
No 310
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=22.23 E-value=1.2e+02 Score=31.43 Aligned_cols=63 Identities=11% Similarity=0.172 Sum_probs=45.2
Q ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC-------------------------CCHHHHHHHHHHHHcCCccCHHH
Q 019340 135 GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL-------------------------GDPAGQFNLGISYLQAQPANAEE 189 (342)
Q Consensus 135 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-------------------------~~~~a~~~Lg~~~~~g~~~~~~~ 189 (342)
.++...+.+|++|...|++++|..+|++|+.. +.+.-++.+..++. ..+-++.
T Consensus 840 ~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe--~~~~~~~ 917 (1139)
T 4fhn_B 840 SDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLF--EESAYID 917 (1139)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHH--HTSCCHH
T ss_pred CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHH--HcCCHHH
Confidence 45667799999999999999999999998632 01223444555555 5567777
Q ss_pred HHHHHHHHHH
Q 019340 190 AVKLLYQASI 199 (342)
Q Consensus 190 A~~~~~~a~~ 199 (342)
+++.-+.|++
T Consensus 918 vi~fa~lAi~ 927 (1139)
T 4fhn_B 918 ALEFSLLADA 927 (1139)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777777776
No 311
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=20.65 E-value=1.8e+02 Score=23.62 Aligned_cols=33 Identities=15% Similarity=-0.072 Sum_probs=28.0
Q ss_pred CCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHcC
Q 019340 273 GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAG 305 (342)
Q Consensus 273 ~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~ 305 (342)
..+.-|...+..+...|++.+|...|++++..+
T Consensus 148 ~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~ 180 (223)
T 4aez_C 148 ESSIFYEEYANYFESRGLFQKADEVYQKGKRMK 180 (223)
T ss_dssp TBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 346666788888999999999999999999874
No 312
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=20.06 E-value=3.4e+02 Score=21.77 Aligned_cols=22 Identities=5% Similarity=-0.081 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHH
Q 019340 260 RQARKWMKRAADCGHGKAQLEH 281 (342)
Q Consensus 260 ~~A~~~~~~a~~~~~~~a~~~L 281 (342)
..|...++.+-..|.+++...|
T Consensus 92 ~~a~aa~~a~~~iG~PE~~i~L 113 (213)
T 3ctd_A 92 VVVQSCCDAFDRVGFPEGLFFL 113 (213)
T ss_dssp HHHHHHHHHHHHHCTTTTHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHH
Confidence 3333333333334444444333
Done!