Query Summary

Your job contains 1 sequence.

Parameters

Threshold: 0.001

Maximum number of alignments shown: 100

BLAST filter: on

Query Sequence

>019341
MSSSTKKKRPKPKSNSSSSSSSSSSSSWSWMTEPPQSLFPSKQDLLRLITVVAIASSVAL
TCNYLANFLNSTSKPFCDSNLLLDSPQSPTDSCEPCPSNGECHQGKLECFHGYRKHGKLC
VEDGDINETAGRLSRWVENRLCRAYAQFLCDGTGSIWVEENDIWNDLEGHELMKIFELDN
PVYLYTKKRTMETVGRYLESRTNSYGMKELKCPELLAEHYKPLSCRIHQWVSTHALIIVP
VCSLLVGCLLLLWKVHRRRYFAIRVEELYHQVCEILEENALMSKSVNGECEPWVVASRLR
DHLLLPKERKDPVIWKKVFFLCPFTRPSFNLGFIIFYGLKYP

High Scoring Gene Products

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  019341
        (342 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2142310 - symbol:AT5G46560 "AT5G46560" species...   766  5.0e-76   1


>TAIR|locus:2142310 [details] [associations]
            symbol:AT5G46560 "AT5G46560" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] [GO:0005639 "integral to nuclear inner
            membrane" evidence=IEA] [GO:0008150 "biological_process"
            evidence=ND] [GO:0009543 "chloroplast thylakoid lumen"
            evidence=ISS] [GO:0005783 "endoplasmic reticulum" evidence=IDA]
            InterPro:IPR018996 Pfam:PF09402 GO:GO:0005783 EMBL:CP002688
            GO:GO:0005639 IPI:IPI00526608 RefSeq:NP_199468.5 UniGene:At.29947
            ProteinModelPortal:F4KHI7 PRIDE:F4KHI7 EnsemblPlants:AT5G46560.1
            GeneID:834699 KEGG:ath:AT5G46560 OMA:EWQVEGS Uniprot:F4KHI7
        Length = 387

 Score = 766 (274.7 bits), Expect = 5.0e-76, P = 5.0e-76
 Identities = 146/291 (50%), Positives = 192/291 (65%)

Query:    31 MTEPPQSLFPSKQDLLRLITVVAIASSVALTCNYLANFLNST-SKPFCDSNLLLDSP-QS 88
             M EPPQSLFPSK +   L+ V+ +A +VA TCN+L+  L+S  SK FCDSN    +P  S
Sbjct:    31 MLEPPQSLFPSKGEFFTLLKVLLVACAVAFTCNFLSKSLSSNPSKSFCDSNF---NPIDS 87

Query:    89 PTDSCEPCPSNGECHQGKLECFHGYRKHGKLCVEDGDINETAGRLSRWVENRLCRAYAQF 148
               D CEPCP NGEC+QGKL+C  GY+    LCVEDG+INE+  +L  + E ++C +YA  
Sbjct:    88 DLDICEPCPINGECYQGKLQCNLGYKNQRNLCVEDGEINESTKKLVGYFERKVCESYAHN 147

Query:   149 LCDGTGSIWVEENDIWNDLEGHELMKIFELDNPVYLYTKKRTMETVGRYLESRTNSYGMK 208
              C GTG+IWV END+W +L  +  +    LD   Y + K + +E V   LE RTNS G+ 
Sbjct:   148 ECYGTGTIWVPENDVWTELRSNSFLS--NLDESAYNFLKGKAVEGVTELLEKRTNSNGID 205

Query:   209 ELKCPELLAEHYKPLSCRIHQWVSTHALIIVPXXXXXXXXXXXXWKVHRRRYFAIRVEEL 268
             ELKCPE +A+ YKPL+CR+HQW+  H LII               ++ R++ F+ RVEEL
Sbjct:   206 ELKCPESVAKSYKPLTCRLHQWILRHILIISSSCAMLVGSAMLRRRIQRKQCFSRRVEEL 265

Query:   269 YHQVCEILEENALMSKSVN-GECEPWVVASRLRDHLLLPKERKDPVIWKKV 318
             Y QVC+ LEENA+ S S     CEPWV+AS LRD+LLLP+ER+DP++W KV
Sbjct:   266 YDQVCDFLEENAVASNSAETSNCEPWVIASWLRDYLLLPRERRDPLLWTKV 316


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.323   0.138   0.452    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      342       302   0.00097  115 3  11 22  0.36    34
                                                     33  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  618 (66 KB)
  Total size of DFA:  269 KB (2141 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  24.52u 0.25s 24.77t   Elapsed:  00:00:01
  Total cpu time:  24.52u 0.25s 24.77t   Elapsed:  00:00:01
  Start:  Sat May 11 10:45:02 2013   End:  Sat May 11 10:45:03 2013

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