BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019341
(342 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q7SGG0|SRB8_NEUCR Mediator of RNA polymerase II transcription subunit 12 OS=Neurospora
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM
1257 / FGSC 987) GN=srb-8 PE=3 SV=1
Length = 1789
Score = 33.9 bits (76), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 27/65 (41%), Gaps = 5/65 (7%)
Query: 49 ITVVAIASSVALTCNYLANFLNSTSKPFCDSNLLL-----DSPQSPTDSCEPCPSNGECH 103
+ V A +T + N N + PFC LLL D Q+ DS E PSN E
Sbjct: 1273 LLVTAAGEGTRVTFEQVLNLTNEFTLPFCHVKLLLSLSSNDQQQNAADSGERVPSNVELF 1332
Query: 104 QGKLE 108
+E
Sbjct: 1333 MNAME 1337
>sp|C5DLA5|SHE3_LACTC SWI5-dependent HO expression protein 3 OS=Lachancea thermotolerans
(strain ATCC 56472 / CBS 6340 / NRRL Y-8284) GN=SHE3
PE=3 SV=1
Length = 423
Score = 33.9 bits (76), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 49/110 (44%), Gaps = 10/110 (9%)
Query: 128 ETAGRLSRWVENRLCRAYAQF--LCDGTGSIWVEENDIWNDLEGHELMKI---FELDNPV 182
+T+G+ +EN+L + Q+ L DG + DLE EL K F+ DN +
Sbjct: 148 QTSGQREGTLENQLQQLQVQYDALVDGQKRYREKY-----DLEVEELKKSLQDFKRDNEM 202
Query: 183 YLYTKKRTMETVGRYLESRTNSYGMKELKCPELLAEHYKPLSCRIHQWVS 232
YL +T+ + L+++ N Y K L +H + LS + S
Sbjct: 203 YLTKNIQTVVSNNTALQTKINQYSGKYKNLESLSQQHMQELSREVEGMAS 252
>sp|A7HCP4|SYR_ANADF Arginine--tRNA ligase OS=Anaeromyxobacter sp. (strain Fw109-5)
GN=argS PE=3 SV=1
Length = 605
Score = 33.5 bits (75), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 26/58 (44%), Gaps = 9/58 (15%)
Query: 104 QGKLECFHGYRKHGKLCVE---DGDINETAGRLSRWVENRLCRAYAQFLCDGTGSIWV 158
Q + FH Y GK E D +TAGRL LCRA Q L +G G + V
Sbjct: 536 QETIAAFHSYYTQGKRTGERVISADARKTAGRLF------LCRALKQVLANGLGLLGV 587
>sp|Q8TBP0|TBC16_HUMAN TBC1 domain family member 16 OS=Homo sapiens GN=TBC1D16 PE=2 SV=1
Length = 767
Score = 32.3 bits (72), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 49/117 (41%), Gaps = 15/117 (12%)
Query: 3 SSTKKKRPKPKSNSSSSSSSSSSSSWSWMTEPPQSLFPSKQDLL--------RLITVVAI 54
SS +K P+P+ + SS +S S TE +L P +D+L R++ A
Sbjct: 102 SSPVRKAPRPRGRRTRSSGASHQPS---PTELRPTLTPKDEDILVVAQSVPDRMLASPAP 158
Query: 55 ASSVALTCNYLANFLNSTSKPFCDSNLLLD--SPQSPTDSC-EPCPSNGECHQGKLE 108
L + S+P C + +L SPQ T+ EP P GE G LE
Sbjct: 159 EDEEKLAQGLGVDGAQPASQPACSPSGILSTVSPQDVTEEGREPRPEAGE-EDGSLE 214
>sp|Q14112|NID2_HUMAN Nidogen-2 OS=Homo sapiens GN=NID2 PE=1 SV=3
Length = 1375
Score = 32.0 bits (71), Expect = 6.7, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 12/68 (17%)
Query: 84 DSPQSPTDSC----EPCPSNGECHQGK-----LECFHGYRKHGKLCVEDGDINETAGRLS 134
DS +P + C C + CH G EC GY+ G+ CV++ NE A
Sbjct: 754 DSDPTPGNPCYDGSHMCDTTARCHPGTGVDYTCECASGYQGDGRNCVDE---NECATGFH 810
Query: 135 RWVENRLC 142
R N +C
Sbjct: 811 RCGPNSVC 818
>sp|P07996|TSP1_HUMAN Thrombospondin-1 OS=Homo sapiens GN=THBS1 PE=1 SV=2
Length = 1170
Score = 31.6 bits (70), Expect = 9.1, Method: Composition-based stats.
Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 21/93 (22%)
Query: 73 SKPF------CDSNLLLDSPQSP-TDSCEPCPSNGECH--------QGKLECFHGYRKHG 117
S+PF +N + P++P TD C N +C+ + EC GY +G
Sbjct: 627 SQPFGQGVEHATANKQVCKPRNPCTDGTHDCNKNAKCNYLGHYSDPMYRCECKPGYAGNG 686
Query: 118 KLCVEDGDINETAGRLSRWVENRLCRAYAQFLC 150
+C ED D++ EN +C A A + C
Sbjct: 687 IICGEDTDLDGWPN------ENLVCVANATYHC 713
>sp|P35441|TSP1_MOUSE Thrombospondin-1 OS=Mus musculus GN=Thbs1 PE=1 SV=1
Length = 1170
Score = 31.6 bits (70), Expect = 9.4, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 15/74 (20%)
Query: 86 PQSP-TDSCEPCPSNGECH--------QGKLECFHGYRKHGKLCVEDGDINETAGRLSRW 136
P++P TD C N +C+ + EC GY +G +C ED D++
Sbjct: 646 PRNPCTDGTHDCNKNAKCNYLGHYSDPMYRCECKPGYAGNGIICGEDTDLDGWPN----- 700
Query: 137 VENRLCRAYAQFLC 150
EN +C A A + C
Sbjct: 701 -ENLVCVANATYHC 713
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.135 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 136,963,049
Number of Sequences: 539616
Number of extensions: 5888936
Number of successful extensions: 33052
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 30490
Number of HSP's gapped (non-prelim): 1729
length of query: 342
length of database: 191,569,459
effective HSP length: 118
effective length of query: 224
effective length of database: 127,894,771
effective search space: 28648428704
effective search space used: 28648428704
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)