Query 019341
Match_columns 342
No_of_seqs 105 out of 113
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 08:40:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019341.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019341hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF09402 MSC: Man1-Src1p-C-ter 100.0 1.3E-49 2.9E-54 386.0 0.7 248 71-327 18-312 (334)
2 PF12946 EGF_MSP1_1: MSP1 EGF 95.0 0.01 2.2E-07 40.8 1.1 28 94-121 5-37 (37)
3 PF01683 EB: EB module; Inter 83.2 1.8 3.9E-05 30.9 3.7 27 91-120 26-52 (52)
4 COG2976 Uncharacterized protei 79.8 6.7 0.00014 36.7 7.0 52 226-277 13-65 (207)
5 PTZ00382 Variant-specific surf 72.7 4.7 0.0001 33.2 3.6 48 73-123 5-56 (96)
6 TIGR03147 cyt_nit_nrfF cytochr 72.6 23 0.0005 30.8 7.9 25 232-256 100-124 (126)
7 PF07645 EGF_CA: Calcium-bindi 70.3 2.7 5.9E-05 28.9 1.4 22 95-116 11-36 (42)
8 PF06387 Calcyon: D1 dopamine 66.6 6.9 0.00015 35.8 3.6 15 109-123 113-127 (186)
9 PF03918 CcmH: Cytochrome C bi 61.7 6.4 0.00014 34.9 2.4 30 232-261 100-129 (148)
10 KOG1214 Nidogen and related ba 59.2 6 0.00013 44.1 2.1 34 91-124 828-867 (1289)
11 PF06667 PspB: Phage shock pro 59.1 47 0.001 26.3 6.7 40 237-277 8-55 (75)
12 PHA02817 EEV Host range protei 58.7 9.7 0.00021 36.1 3.2 53 72-127 66-139 (225)
13 PF12273 RCR: Chitin synthesis 57.2 8.7 0.00019 32.8 2.4 6 234-239 2-7 (130)
14 PRK10772 cell division protein 54.3 1.2E+02 0.0027 25.6 8.8 42 218-259 6-48 (108)
15 PF12947 EGF_3: EGF domain; I 53.4 7.2 0.00016 26.4 1.0 26 95-120 7-36 (36)
16 PF01826 TIL: Trypsin Inhibito 52.9 7.2 0.00016 28.1 1.1 26 96-124 27-53 (55)
17 KOG0196 Tyrosine kinase, EPH ( 51.7 13 0.00028 41.5 3.2 43 73-117 275-320 (996)
18 PRK10144 formate-dependent nit 48.1 1.3E+02 0.0028 26.2 8.1 16 123-138 27-42 (126)
19 smart00179 EGF_CA Calcium-bind 47.6 18 0.00039 23.2 2.3 26 94-120 9-38 (39)
20 cd00053 EGF Epidermal growth f 45.7 20 0.00042 22.1 2.2 25 95-120 7-35 (36)
21 PF07974 EGF_2: EGF-like domai 44.5 20 0.00042 23.7 2.0 21 94-114 6-28 (32)
22 TIGR02976 phageshock_pspB phag 44.2 1.2E+02 0.0026 24.0 6.8 45 234-279 5-57 (75)
23 PF14316 DUF4381: Domain of un 43.7 66 0.0014 27.9 5.9 27 233-259 22-48 (146)
24 PF13314 DUF4083: Domain of un 42.5 1.1E+02 0.0024 23.2 5.9 15 264-278 43-57 (58)
25 PF02009 Rifin_STEVOR: Rifin/s 41.4 39 0.00084 33.4 4.5 18 247-264 273-290 (299)
26 KOG0818 GTPase-activating prot 39.7 3.2E+02 0.0068 29.4 10.8 64 131-195 213-289 (669)
27 PF06864 PAP_PilO: Pilin acces 37.4 65 0.0014 32.8 5.6 19 312-331 275-293 (414)
28 smart00032 CCP Domain abundant 37.3 19 0.00041 24.6 1.2 20 107-126 28-50 (57)
29 cd00033 CCP Complement control 37.2 18 0.00038 25.0 1.0 20 107-126 27-49 (57)
30 PF00558 Vpu: Vpu protein; In 36.6 36 0.00077 27.5 2.8 22 253-274 27-48 (81)
31 PRK09458 pspB phage shock prot 35.5 1.2E+02 0.0025 24.2 5.5 33 240-272 11-51 (75)
32 PRK14758 hypothetical protein; 35.4 66 0.0014 20.7 3.2 18 232-249 3-20 (27)
33 PRK11246 hypothetical protein; 35.2 1.7E+02 0.0037 27.8 7.5 29 227-255 4-32 (218)
34 PF07127 Nodulin_late: Late no 30.8 93 0.002 22.6 4.0 26 73-113 26-52 (54)
35 TIGR00964 secE_bact preprotein 30.1 1E+02 0.0022 22.5 4.1 21 39-59 17-37 (55)
36 PF10144 SMP_2: Bacterial viru 30.1 4E+02 0.0088 24.9 9.1 17 315-334 126-142 (210)
37 PF10576 EndIII_4Fe-2S: Iron-s 29.9 20 0.00044 20.6 0.3 13 90-102 5-17 (17)
38 PF13268 DUF4059: Protein of u 29.4 2E+02 0.0043 22.8 5.7 37 236-272 13-51 (72)
39 PF04891 NifQ: NifQ; InterPro 29.4 63 0.0014 29.3 3.5 57 39-104 107-167 (167)
40 PHA02639 EEV host range protei 28.8 39 0.00085 33.2 2.2 53 72-127 126-199 (295)
41 COG3116 FtsL Cell division pro 28.4 3.5E+02 0.0077 22.9 7.4 64 220-283 6-78 (105)
42 cd03580 NTR_Sfrp1_like NTR dom 28.3 19 0.00041 30.8 -0.1 28 90-117 1-30 (126)
43 PRK07597 secE preprotein trans 27.6 1.2E+02 0.0025 22.8 4.2 23 38-60 25-47 (64)
44 PF12729 4HB_MCP_1: Four helix 27.5 3.2E+02 0.007 22.5 7.4 12 260-271 32-43 (181)
45 PF07543 PGA2: Protein traffic 27.4 1.5E+02 0.0033 26.0 5.5 35 244-278 22-56 (140)
46 PF00084 Sushi: Sushi domain ( 27.2 24 0.00053 24.3 0.4 20 107-126 27-49 (56)
47 PF10805 DUF2730: Protein of u 26.8 2.5E+02 0.0055 23.2 6.5 37 230-268 4-40 (106)
48 PRK15428 putative propanediol 26.5 57 0.0012 29.6 2.6 30 264-301 5-34 (163)
49 PF10588 NADH-G_4Fe-4S_3: NADH 26.2 30 0.00065 24.0 0.7 16 88-103 11-26 (41)
50 KOG1420 Ca2+-activated K+ chan 25.3 2.3E+02 0.005 31.0 7.2 39 23-62 22-62 (1103)
51 smart00181 EGF Epidermal growt 24.2 72 0.0016 20.0 2.2 25 94-120 6-34 (35)
52 COG0690 SecE Preprotein transl 23.9 1.6E+02 0.0035 22.9 4.5 22 38-59 35-56 (73)
53 smart00051 DSL delta serrate l 23.9 60 0.0013 24.6 2.0 40 72-114 16-59 (63)
54 PF07988 LMSTEN: LMSTEN motif; 23.8 88 0.0019 22.6 2.6 21 116-136 16-36 (48)
55 PF01102 Glycophorin_A: Glycop 23.3 1.1E+02 0.0024 26.4 3.8 26 236-261 68-93 (122)
56 PHA02673 ORF109 EEV glycoprote 23.3 1.4E+02 0.003 27.1 4.4 22 45-66 35-56 (161)
57 PF10500 SR-25: Nuclear RNA-sp 23.1 57 0.0012 31.0 2.1 9 176-184 158-166 (225)
58 KOG2903 Predicted glutathione 22.4 54 0.0012 32.2 1.8 28 132-163 210-237 (319)
59 PF00584 SecE: SecE/Sec61-gamm 22.3 2.1E+02 0.0046 20.6 4.6 21 39-59 18-38 (57)
60 KOG4289 Cadherin EGF LAG seven 22.3 48 0.001 39.6 1.6 36 73-117 1231-1272(2531)
61 PF07699 GCC2_GCC3: GCC2 and G 22.2 91 0.002 21.8 2.6 31 72-104 9-39 (48)
62 PF06679 DUF1180: Protein of u 22.1 3.6E+02 0.0079 24.4 7.0 34 33-66 82-115 (163)
63 PF09802 Sec66: Preprotein tra 21.8 1.3E+02 0.0028 28.0 4.1 22 242-263 13-34 (190)
64 PF12662 cEGF: Complement Clr- 21.6 55 0.0012 20.4 1.1 15 108-122 5-21 (24)
65 PF04882 Peroxin-3: Peroxin-3; 20.9 63 0.0014 33.3 2.1 25 227-251 4-28 (432)
66 PHA02831 EEV host range protei 20.9 78 0.0017 30.8 2.6 51 72-126 119-188 (268)
67 PF06247 Plasmod_Pvs28: Plasmo 20.8 36 0.00078 31.7 0.3 32 95-126 51-91 (197)
68 PHA02642 C-type lectin-like pr 20.8 1.9E+02 0.004 27.4 5.0 19 48-66 56-74 (216)
69 PF07271 Cytadhesin_P30: Cytad 20.8 2.9E+02 0.0064 27.1 6.4 9 263-271 107-115 (279)
70 PF07466 DUF1517: Protein of u 20.7 2.6E+02 0.0057 27.4 6.2 17 43-59 62-78 (289)
71 PF05399 EVI2A: Ectropic viral 20.4 2.5E+02 0.0054 26.7 5.6 18 49-66 131-148 (227)
72 PF11694 DUF3290: Protein of u 20.3 4.8E+02 0.01 23.1 7.3 18 289-306 96-113 (149)
73 PF00957 Synaptobrevin: Synapt 20.1 1.5E+02 0.0033 23.2 3.8 21 230-250 62-82 (89)
No 1
>PF09402 MSC: Man1-Src1p-C-terminal domain; InterPro: IPR018996 This entry represents the Inner nuclear membrane proteins MAN1 (also known as LEM domain-containing protein 3) and LEM domain-containing protein 2 (or LEM protein 2). Emerin and MAN1 are LEM domain-containing integral membrane proteins of the vertebrate nuclear envelope []. MAN1 is an integral protein of the inner nuclear membrane which binds to chromatin associated proteins and plays a role in nuclear organisation. The C-terminal nulceoplasmic region forms a DNA binding winged helix and binds to Smad []. LEM protein 2 is an essential protein involved in chromosome segregation and cell division, probably via its interaction with lmn-1, the main component of nuclear lamina. Has some overlapping function with emr-1.; GO: 0005639 integral to nuclear inner membrane; PDB: 2CH0_A.
Probab=100.00 E-value=1.3e-49 Score=386.01 Aligned_cols=248 Identities=27% Similarity=0.411 Sum_probs=54.1
Q ss_pred CCCCCCCCCCCCCCCC--------------CCCCCCCccCCCCceecCC-ceecCCCceec-----------CCccccCc
Q 019341 71 STSKPFCDSNLLLDSP--------------QSPTDSCEPCPSNGECHQG-KLECFHGYRKH-----------GKLCVEDG 124 (342)
Q Consensus 71 ~~~~pfCds~~~~~~~--------------~~~~~~C~PCP~ha~C~~g-~l~C~~gfvl~-----------~p~CvpD~ 124 (342)
+-..+|||++. .+. +..+|+|+|||+||+|++| ++.|++||+++ +++|++|+
T Consensus 18 ~~~vgyC~~~~--~~~~~~~~~~~~~~~~~~~~~P~C~pCP~~a~C~~~~~~~C~~~y~~~~~~l~~~g~~p~~~Ci~D~ 95 (334)
T PF09402_consen 18 KIAVGYCGTES--PSPSFADDDISVPDWLLENFKPSCEPCPEHAICYPGLKLECEPGYVLKPSPLSLFGLIPPPKCIPDT 95 (334)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccc--ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccH
Confidence 35899999996 233 3467899999999999999 78999999999 99999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhccccc---CCCCcccchhhHHhhhhhhhhhhhhccChhhHHHHHHHHHHHHHhhhhhc
Q 019341 125 DINETAGRLSRWVENRLCRAYAQFLCD---GTGSIWVEENDIWNDLEGHELMKIFELDNPVYLYTKKRTMETVGRYLESR 201 (342)
Q Consensus 125 ek~~~~k~v~~~i~~~Lr~rra~~eCG---~~~s~~v~e~dl~~~l~e~~~ke~~~ls~~~f~~l~~~Ale~i~~~le~~ 201 (342)
++++.+++|++++.++||+++|+++|| ...+..++++|+.+.+.++.. ..+++++|+++|+.|+.++.+.-+..
T Consensus 96 ~k~~~i~~l~~~~~~~Lr~~~a~~~Cg~~~~~~~~~ls~~el~~~~~~~~~---~~~~~~efe~l~~~a~~~L~~~~ei~ 172 (334)
T PF09402_consen 96 EKEEKIEELAKKILDELRERNAQYECGDSEDDESPGLSEEELKDILSSKKS---PWISDEEFEELWSAALQELKKNPEII 172 (334)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCcHHHHHHHHHhccC---ccccHHHHHHHHHHHHHHHHhCCcEE
Confidence 999999999999999999999999999 444778999999999887542 36899999999999999885443222
Q ss_pred cc------------CCCceeeecchhhhccccCcchHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019341 202 TN------------SYGMKELKCPELLAEHYKPLSCRIHQW----VSTHALIIVPVCSLLVGCLLLLWKVHRRRYFAIRV 265 (342)
Q Consensus 202 ~~------------sn~~~~~k~~~~~s~a~lpl~C~~r~~----I~~~~l~I~~~~~lilg~~~~~~~~~~rr~~~~Rv 265 (342)
.. ..+...+.+ ++++++||+|++++. +.+|++.++++++++++++|+++++++++.++++|
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~s---~s~~~lpl~C~~~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v 249 (334)
T PF09402_consen 173 IRDDIINSHSSDDSNEKDKYFRS---SSLPYLPLKCRLRRQIRQFISRYRLIILGVLILLLLIKYIRYRYRKRREEKARV 249 (334)
T ss_dssp ----------------------------------------------------------------------STHHHHHTTT
T ss_pred EecccccccccccccCCcEEEEe---eCCCccccEEEEehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 112223332 479999999977655 56888888888888888899999999999999999
Q ss_pred HHHHHHHHHHHHHhHhhhcCCCCCCCCeeecccccccccCCC-CCC-ChhhhHHHHhhccCCCC
Q 019341 266 EELYHQVCEILEENALMSKSVNGECEPWVVASRLRDHLLLPK-ERK-DPVIWKKVFFLCPFTRP 327 (342)
Q Consensus 266 ~eLV~~vld~L~~~al~~~~~~~~~eP~I~~~qLRD~lL~~~-~rk-r~~LWkkV~kvVE~~~~ 327 (342)
++||++|+++|++|+.. ...+...+|||++.||||+||.+. ..+ +++||++|+++||+|+.
T Consensus 250 ~~lv~~ii~~L~~~~~~-~~~~~~~~p~v~~~qLRD~ll~~~~~~~~~~~lW~~v~~~ve~ns~ 312 (334)
T PF09402_consen 250 EELVKKIIDRLQDQARA-SDPNSSPEPYVSISQLRDDLLPPEHRLKRRNRLWKKVVKKVEENSN 312 (334)
T ss_dssp TTTHHHHHHHHHHHHHH-HTTSS-S-S-B-HHHHHHTT--STTGGG-GHHHHHHHHHHHTT---
T ss_pred HHHHHHHHHHHHHHhhh-hccCCCCCCCccHHHHHHHhCCcccCHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999998873 334467799999999999999993 333 79999999999999764
No 2
>PF12946 EGF_MSP1_1: MSP1 EGF domain 1; InterPro: IPR024730 This EGF-like domain is found at the C terminus of the malaria parasite MSP1 protein. MSP1 is the merozoite surface protein 1. This domain is part of the C-terminal fragment that is proteolytically processed from the the rest of the protein and is left attached to the surface of the invading parasite [].; PDB: 1N1I_C 2FLG_A 1CEJ_A 2NPR_A 1B9W_A 1OB1_F.
Probab=95.04 E-value=0.01 Score=40.80 Aligned_cols=28 Identities=43% Similarity=1.067 Sum_probs=20.5
Q ss_pred ccCCCCceecC---Cc--eecCCCceecCCccc
Q 019341 94 EPCPSNGECHQ---GK--LECFHGYRKHGKLCV 121 (342)
Q Consensus 94 ~PCP~ha~C~~---g~--l~C~~gfvl~~p~Cv 121 (342)
++||+||.|++ |+ -+|..||++.+.+|+
T Consensus 5 ~~cP~NA~C~~~~dG~eecrCllgyk~~~~~C~ 37 (37)
T PF12946_consen 5 TKCPANAGCFRYDDGSEECRCLLGYKKVGGKCV 37 (37)
T ss_dssp S---TTEEEEEETTSEEEEEE-TTEEEETTEEE
T ss_pred ccCCCCcccEEcCCCCEEEEeeCCccccCCCcC
Confidence 58999999997 53 399999999998886
No 3
>PF01683 EB: EB module; InterPro: IPR006149 The EB domain has no known function. It is found in several Caenorhabditis sp. and Drosophila sp. proteins. The domain contains 8 conserved cysteines that probably form four disulphide bridges and is found associated with kunitz domains IPR002223 from INTERPRO
Probab=83.18 E-value=1.8 Score=30.94 Aligned_cols=27 Identities=30% Similarity=0.786 Sum_probs=23.6
Q ss_pred CCCccCCCCceecCCceecCCCceecCCcc
Q 019341 91 DSCEPCPSNGECHQGKLECFHGYRKHGKLC 120 (342)
Q Consensus 91 ~~C~PCP~ha~C~~g~l~C~~gfvl~~p~C 120 (342)
.+|+ .++.|.+|.-.|.+||+..+.+|
T Consensus 26 ~qC~---~~s~C~~g~C~C~~g~~~~~~~C 52 (52)
T PF01683_consen 26 EQCI---GGSVCVNGRCQCPPGYVEVGGRC 52 (52)
T ss_pred CCCC---CcCEEcCCEeECCCCCEecCCCC
Confidence 4565 99999999999999999988776
No 4
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=79.78 E-value=6.7 Score=36.73 Aligned_cols=52 Identities=12% Similarity=0.161 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q 019341 226 RIHQWVSTHALIIVPVCSLLVGCLLLLWKVHRRRYFAIR-VEELYHQVCEILE 277 (342)
Q Consensus 226 ~~r~~I~~~~l~I~~~~~lilg~~~~~~~~~~rr~~~~R-v~eLV~~vld~L~ 277 (342)
++|+|++.+...++..+++.+|.++...+...++..+.+ ....|+++.+.++
T Consensus 13 ~ik~wwkeNGk~li~gviLg~~~lfGW~ywq~~q~~q~~~AS~~Y~~~i~~~~ 65 (207)
T COG2976 13 AIKDWWKENGKALIVGVILGLGGLFGWRYWQSHQVEQAQEASAQYQNAIKAVQ 65 (207)
T ss_pred HHHHHHHHCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 578899988877777667777777665555555555555 3456777777663
No 5
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=72.74 E-value=4.7 Score=33.18 Aligned_cols=48 Identities=25% Similarity=0.522 Sum_probs=29.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCCccCCC--CceecCCc-e-ecCCCceecCCccccC
Q 019341 73 SKPFCDSNLLLDSPQSPTDSCEPCPS--NGECHQGK-L-ECFHGYRKHGKLCVED 123 (342)
Q Consensus 73 ~~pfCds~~~~~~~~~~~~~C~PCP~--ha~C~~g~-l-~C~~gfvl~~p~CvpD 123 (342)
.+.-|+++ + .+......|.+||. =+.|.... - .|..||.+.+..|+..
T Consensus 5 ~Ct~C~~g--~-~~~~~~~~C~~C~~~~C~~C~~~~~C~~C~~GY~~~~~~Cv~~ 56 (96)
T PTZ00382 5 VCTSCDSD--K-KPNKDGSGCVLCSVGNCKSCVVDGVCGECNSGFSLDNGKCVSS 56 (96)
T ss_pred ccCcCCCC--C-ccCCCCCcCCcCCCCCCcCCCCCCccccCcCCcccCCCccccc
Confidence 34457665 2 22233456999985 23343323 2 8999999998888863
No 6
>TIGR03147 cyt_nit_nrfF cytochrome c nitrite reductase, accessory protein NrfF.
Probab=72.60 E-value=23 Score=30.76 Aligned_cols=25 Identities=32% Similarity=0.371 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019341 232 STHALIIVPVCSLLVGCLLLLWKVH 256 (342)
Q Consensus 232 ~~~~l~I~~~~~lilg~~~~~~~~~ 256 (342)
..+.+.+++++++++|...+.+.++
T Consensus 100 ~t~~LW~~P~lll~~G~~~~~~~~r 124 (126)
T TIGR03147 100 QTLLLWLLPVLLLLLAFVLLWRVRR 124 (126)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3566667777777777765555444
No 7
>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins. Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A ....
Probab=70.29 E-value=2.7 Score=28.91 Aligned_cols=22 Identities=41% Similarity=1.004 Sum_probs=18.3
Q ss_pred cCCCCceecC--Cce--ecCCCceec
Q 019341 95 PCPSNGECHQ--GKL--ECFHGYRKH 116 (342)
Q Consensus 95 PCP~ha~C~~--g~l--~C~~gfvl~ 116 (342)
+|+.++.|.+ |.. .|.+||...
T Consensus 11 ~C~~~~~C~N~~Gsy~C~C~~Gy~~~ 36 (42)
T PF07645_consen 11 NCPENGTCVNTEGSYSCSCPPGYELN 36 (42)
T ss_dssp SSSTTSEEEEETTEEEEEESTTEEEC
T ss_pred cCCCCCEEEcCCCCEEeeCCCCcEEC
Confidence 6899999999 543 999999943
No 8
>PF06387 Calcyon: D1 dopamine receptor-interacting protein (calcyon); InterPro: IPR009431 This family consists of several D1 dopamine receptor-interacting (calcyon) proteins. D1/D5 dopamine receptors in the basal ganglia, hippocampus, and cerebral cortex modulate motor, reward, and cognitive behaviour. D1-like dopamine receptors likely modulate neocortical and hippocampal neuronal excitability and synaptic function via Ca2+ as well as cAMP-dependent signalling []. Defective calcyon proteins have been implicated in both attention-deficit/hyperactivity disorder (ADHD) [] and schizophrenia.; GO: 0050780 dopamine receptor binding, 0007212 dopamine receptor signaling pathway, 0016021 integral to membrane
Probab=66.59 E-value=6.9 Score=35.84 Aligned_cols=15 Identities=27% Similarity=0.510 Sum_probs=11.9
Q ss_pred cCCCceecCCccccC
Q 019341 109 CFHGYRKHGKLCVED 123 (342)
Q Consensus 109 C~~gfvl~~p~CvpD 123 (342)
|.+||+++...|.|-
T Consensus 113 CPdGFv~khk~C~P~ 127 (186)
T PF06387_consen 113 CPDGFVLKHKRCTPL 127 (186)
T ss_pred CCCcceeecccccch
Confidence 445999999999873
No 9
>PF03918 CcmH: Cytochrome C biogenesis protein; InterPro: IPR005616 Members of this family include NrfF, CcmH, CycL, Ccl2.; PDB: 2KW0_A 2HL7_A.
Probab=61.70 E-value=6.4 Score=34.88 Aligned_cols=30 Identities=33% Similarity=0.368 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019341 232 STHALIIVPVCSLLVGCLLLLWKVHRRRYF 261 (342)
Q Consensus 232 ~~~~l~I~~~~~lilg~~~~~~~~~~rr~~ 261 (342)
..+.+.+++++++++|.+.+.+.+++++..
T Consensus 100 ~~~~lW~~P~~~l~~g~~~~~~~~rr~~~~ 129 (148)
T PF03918_consen 100 FTWLLWLGPFLLLLLGGALLFRRLRRWRRR 129 (148)
T ss_dssp ------------------------------
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 456666777777777777766666655443
No 10
>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=59.17 E-value=6 Score=44.09 Aligned_cols=34 Identities=38% Similarity=0.917 Sum_probs=29.5
Q ss_pred CCCcc--CCCCceecC--Cce--ecCCCceecCCccccCc
Q 019341 91 DSCEP--CPSNGECHQ--GKL--ECFHGYRKHGKLCVEDG 124 (342)
Q Consensus 91 ~~C~P--CP~ha~C~~--g~l--~C~~gfvl~~p~CvpD~ 124 (342)
++|.| |=++|.||+ |.+ +|.+||.-.+-.||||+
T Consensus 828 DeC~psrChp~A~CyntpgsfsC~C~pGy~GDGf~CVP~~ 867 (1289)
T KOG1214|consen 828 DECSPSRCHPAATCYNTPGSFSCRCQPGYYGDGFQCVPDT 867 (1289)
T ss_pred cccCccccCCCceEecCCCcceeecccCccCCCceecCCC
Confidence 77776 999999999 443 99999999999999993
No 11
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=59.08 E-value=47 Score=26.31 Aligned_cols=40 Identities=25% Similarity=0.348 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHH
Q 019341 237 IIVPVCSLLVGCLLLLWKVHRRRY--------FAIRVEELYHQVCEILE 277 (342)
Q Consensus 237 ~I~~~~~lilg~~~~~~~~~~rr~--------~~~Rv~eLV~~vld~L~ 277 (342)
..+++++++++.+|+..-|+.+++ +..+..+|++++ ++|+
T Consensus 8 ~plivf~ifVap~WL~lHY~sk~~~~~gLs~~d~~~L~~L~~~a-~rm~ 55 (75)
T PF06667_consen 8 VPLIVFMIFVAPIWLILHYRSKWKSSQGLSEEDEQRLQELYEQA-ERME 55 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHH-HHHH
Confidence 344455666666665444443332 344556666653 3443
No 12
>PHA02817 EEV Host range protein; Provisional
Probab=58.69 E-value=9.7 Score=36.09 Aligned_cols=53 Identities=17% Similarity=0.362 Sum_probs=33.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCc--cCC----CCc----------eecCCc--eecCCCceecC---CccccCchhh
Q 019341 72 TSKPFCDSNLLLDSPQSPTDSCE--PCP----SNG----------ECHQGK--LECFHGYRKHG---KLCVEDGDIN 127 (342)
Q Consensus 72 ~~~pfCds~~~~~~~~~~~~~C~--PCP----~ha----------~C~~g~--l~C~~gfvl~~---p~CvpD~ek~ 127 (342)
+..-.|..+. .+ ....|.|+ .|| +|| +.++.. .+|++||.+.| -+|..|+...
T Consensus 66 ~~~i~C~~dG-~W--s~~~P~C~~v~C~~P~i~NG~v~~~~~~~~y~yg~~Vty~C~~Gy~L~G~~~~tC~~~G~WS 139 (225)
T PHA02817 66 EKNIICEKDG-KW--NKEFPVCKIIRCRFPALQNGFVNGIPDSKKFYYESEVSFSCKPGFVLIGTKYSVCGINSSWI 139 (225)
T ss_pred CCeEEECCCC-cC--CCCCCeeeeeECCCCCCcCceeEccccCCceEcCCEEEEEcCCCCEEcCCCceEECCCCeEC
Confidence 4556786542 12 23468997 685 344 233444 39999999988 5777777653
No 13
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=57.25 E-value=8.7 Score=32.80 Aligned_cols=6 Identities=17% Similarity=0.368 Sum_probs=2.3
Q ss_pred HHHHHH
Q 019341 234 HALIIV 239 (342)
Q Consensus 234 ~~l~I~ 239 (342)
|.+.++
T Consensus 2 W~l~~i 7 (130)
T PF12273_consen 2 WVLFAI 7 (130)
T ss_pred eeeHHH
Confidence 443333
No 14
>PRK10772 cell division protein FtsL; Provisional
Probab=54.30 E-value=1.2e+02 Score=25.58 Aligned_cols=42 Identities=14% Similarity=0.158 Sum_probs=23.2
Q ss_pred ccccCcchHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019341 218 EHYKPLSCRIHQWVST-HALIIVPVCSLLVGCLLLLWKVHRRR 259 (342)
Q Consensus 218 ~a~lpl~C~~r~~I~~-~~l~I~~~~~lilg~~~~~~~~~~rr 259 (342)
..+.+|...+-.=+.+ +++.++.+++++++.+.+.+.-+..|
T Consensus 6 ~~~~~L~~iI~~Dl~~~~kl~l~Ll~~vv~SAl~VV~~~h~tR 48 (108)
T PRK10772 6 NERHALPGVIGDDLLRNGKLPLCLFIAVIVSAVTVVTTAHHTR 48 (108)
T ss_pred CCCCChHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666676665555 77666665555555554444333333
No 15
>PF12947 EGF_3: EGF domain; InterPro: IPR024731 This entry represents an EGF domain found in the the C terminus of malarial parasite merozoite surface protein 1 [], as well as other proteins.; PDB: 2NPR_A 1N1I_C 1B9W_A 1YO8_A 2RHP_A.
Probab=53.35 E-value=7.2 Score=26.41 Aligned_cols=26 Identities=35% Similarity=0.896 Sum_probs=18.6
Q ss_pred cCCCCceecC--Cce--ecCCCceecCCcc
Q 019341 95 PCPSNGECHQ--GKL--ECFHGYRKHGKLC 120 (342)
Q Consensus 95 PCP~ha~C~~--g~l--~C~~gfvl~~p~C 120 (342)
.|=+||.|.+ +.+ .|.+||.-.+-.|
T Consensus 7 ~C~~nA~C~~~~~~~~C~C~~Gy~GdG~~C 36 (36)
T PF12947_consen 7 GCHPNATCTNTGGSYTCTCKPGYEGDGFFC 36 (36)
T ss_dssp GS-TTCEEEE-TTSEEEEE-CEEECCSTCE
T ss_pred CCCCCcEeecCCCCEEeECCCCCccCCcCC
Confidence 6888999998 343 9999998776554
No 16
>PF01826 TIL: Trypsin Inhibitor like cysteine rich domain; InterPro: IPR002919 This domain is found in proteinase inhibitors as well as in many extracellular proteins. The domain typically contains ten cysteine residues that form five disulphide bonds. The cysteine residues that form the disulphide bonds are 1-7, 2-6, 3-5, 4-10 and 8-9. This inhibitor domain belongs to MEROPS inhibitor family I8 (clan IA). Proteins containing this domain inhibit peptidases belonging to families S1 (IPR001254 from INTERPRO), S8 (IPR000209 from INTERPRO), and M4 (IPR001570 from INTERPRO) [] and are restricted to the chordata, nematoda, arthropoda and echinodermata. Examples of proteins containing this domain are: chymotrypsin/elastase inhibitor from Ascaris suum (pig roundworm) Acp62F protein from Drosophila melanogaster Bombina trypsin inhibitor from Bombina maxima (large-webbed bell toad) Bombyx subtilisin inhibitor from Bombyx mori (silk moth) von Willebrand factor ; PDB: 2P3F_N 1HX2_A 1CCV_A 1EAI_D 2H9E_C 1COU_A 1ATE_A 1ATB_A 1ATD_A 1ATA_A ....
Probab=52.92 E-value=7.2 Score=28.07 Aligned_cols=26 Identities=31% Similarity=0.752 Sum_probs=21.2
Q ss_pred CCCCceecCCceecCCCceecCC-ccccCc
Q 019341 96 CPSNGECHQGKLECFHGYRKHGK-LCVEDG 124 (342)
Q Consensus 96 CP~ha~C~~g~l~C~~gfvl~~p-~CvpD~ 124 (342)
|+ ..|.+| -.|.+||++... .||+-.
T Consensus 27 C~--~~C~~g-C~C~~G~v~~~~~~CV~~~ 53 (55)
T PF01826_consen 27 CS--EPCVEG-CFCPPGYVRNDNGRCVPPS 53 (55)
T ss_dssp CS--SS-ESE-EEETTTEEEETTSEEEEGG
T ss_pred cC--CCCCcc-CCCCCCeeEcCCCCEEcHH
Confidence 55 779998 899999999887 999865
No 17
>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]
Probab=51.75 E-value=13 Score=41.45 Aligned_cols=43 Identities=23% Similarity=0.560 Sum_probs=31.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCccCCCCceecC-Cc--eecCCCceecC
Q 019341 73 SKPFCDSNLLLDSPQSPTDSCEPCPSNGECHQ-GK--LECFHGYRKHG 117 (342)
Q Consensus 73 ~~pfCds~~~~~~~~~~~~~C~PCP~ha~C~~-g~--l~C~~gfvl~~ 117 (342)
.+--|..+. + +.......|.|||+|.+=.. |. ..|+.||-+.+
T Consensus 275 ~C~aCp~G~-y-K~~~~~~~C~~CP~~S~s~~ega~~C~C~~gyyRA~ 320 (996)
T KOG0196|consen 275 ACQACPPGT-Y-KASQGDSLCLPCPPNSHSSSEGATSCTCENGYYRAD 320 (996)
T ss_pred cceeCCCCc-c-cCCCCCCCCCCCCCCCCCCCCCCCcccccCCcccCC
Confidence 455566664 2 22345689999999999954 63 49999999877
No 18
>PRK10144 formate-dependent nitrite reductase complex subunit NrfF; Provisional
Probab=48.09 E-value=1.3e+02 Score=26.23 Aligned_cols=16 Identities=6% Similarity=0.075 Sum_probs=10.1
Q ss_pred CchhhHHHHHHHHHHH
Q 019341 123 DGDINETAGRLSRWVE 138 (342)
Q Consensus 123 D~ek~~~~k~v~~~i~ 138 (342)
|++.++++.++++.++
T Consensus 27 ~~~~e~r~~~L~~~LR 42 (126)
T PRK10144 27 NPQQQQQALNIASQLR 42 (126)
T ss_pred CHHHHHHHHHHHHcCC
Confidence 4566667777755554
No 19
>smart00179 EGF_CA Calcium-binding EGF-like domain.
Probab=47.60 E-value=18 Score=23.19 Aligned_cols=26 Identities=42% Similarity=1.115 Sum_probs=19.1
Q ss_pred ccCCCCceecC--Cce--ecCCCceecCCcc
Q 019341 94 EPCPSNGECHQ--GKL--ECFHGYRKHGKLC 120 (342)
Q Consensus 94 ~PCP~ha~C~~--g~l--~C~~gfvl~~p~C 120 (342)
.||..+|.|.+ |.. .|..||. .+..|
T Consensus 9 ~~C~~~~~C~~~~g~~~C~C~~g~~-~g~~C 38 (39)
T smart00179 9 NPCQNGGTCVNTVGSYRCECPPGYT-DGRNC 38 (39)
T ss_pred CCcCCCCEeECCCCCeEeECCCCCc-cCCcC
Confidence 36989999986 333 8889998 55555
No 20
>cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium.
Probab=45.68 E-value=20 Score=22.07 Aligned_cols=25 Identities=32% Similarity=0.890 Sum_probs=18.4
Q ss_pred cCCCCceecCC--ce--ecCCCceecCCcc
Q 019341 95 PCPSNGECHQG--KL--ECFHGYRKHGKLC 120 (342)
Q Consensus 95 PCP~ha~C~~g--~l--~C~~gfvl~~p~C 120 (342)
+|..|+.|.+. .. .|..||... ..|
T Consensus 7 ~C~~~~~C~~~~~~~~C~C~~g~~g~-~~C 35 (36)
T cd00053 7 PCSNGGTCVNTPGSYRCVCPPGYTGD-RSC 35 (36)
T ss_pred CCCCCCEEecCCCCeEeECCCCCccc-CCc
Confidence 67789999983 33 899999765 444
No 21
>PF07974 EGF_2: EGF-like domain; InterPro: IPR013111 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length. This entry contains EGF domains found in a variety of extracellular and membrane proteins
Probab=44.48 E-value=20 Score=23.69 Aligned_cols=21 Identities=33% Similarity=0.830 Sum_probs=17.6
Q ss_pred ccCCCCceec--CCceecCCCce
Q 019341 94 EPCPSNGECH--QGKLECFHGYR 114 (342)
Q Consensus 94 ~PCP~ha~C~--~g~l~C~~gfv 114 (342)
..|=.||.|. .|.-.|++||.
T Consensus 6 ~~C~~~G~C~~~~g~C~C~~g~~ 28 (32)
T PF07974_consen 6 NICSGHGTCVSPCGRCVCDSGYT 28 (32)
T ss_pred CccCCCCEEeCCCCEEECCCCCc
Confidence 3588899999 56779999985
No 22
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=44.20 E-value=1.2e+02 Score=23.99 Aligned_cols=45 Identities=24% Similarity=0.323 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHh
Q 019341 234 HALIIVPVCSLLVGCLLLLWKVHRRRY--------FAIRVEELYHQVCEILEEN 279 (342)
Q Consensus 234 ~~l~I~~~~~lilg~~~~~~~~~~rr~--------~~~Rv~eLV~~vld~L~~~ 279 (342)
....-+++++++++.+|+...++.++. +..+..+|++++ ++|+++
T Consensus 5 fl~~Pliif~ifVap~wl~lHY~~k~~~~~~ls~~d~~~L~~L~~~a-~rm~eR 57 (75)
T TIGR02976 5 FLAIPLIIFVIFVAPLWLILHYRSKRKTAASLSTDDQALLQELYAKA-DRLEER 57 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHH-HHHHHH
No 23
>PF14316 DUF4381: Domain of unknown function (DUF4381)
Probab=43.73 E-value=66 Score=27.88 Aligned_cols=27 Identities=30% Similarity=0.423 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019341 233 THALIIVPVCSLLVGCLLLLWKVHRRR 259 (342)
Q Consensus 233 ~~~l~I~~~~~lilg~~~~~~~~~~rr 259 (342)
.|-+.+++++++++.+++..++.++++
T Consensus 22 GWwll~~lll~~~~~~~~~~~r~~~~~ 48 (146)
T PF14316_consen 22 GWWLLLALLLLLLILLLWRLWRRWRRN 48 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 445455554444444444444444443
No 24
>PF13314 DUF4083: Domain of unknown function (DUF4083)
Probab=42.54 E-value=1.1e+02 Score=23.24 Aligned_cols=15 Identities=27% Similarity=0.527 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHH
Q 019341 264 RVEELYHQVCEILEE 278 (342)
Q Consensus 264 Rv~eLV~~vld~L~~ 278 (342)
.+++=.+.+++.|+.
T Consensus 43 ~~eqKLDrIIeLLEK 57 (58)
T PF13314_consen 43 SMEQKLDRIIELLEK 57 (58)
T ss_pred HHHHHHHHHHHHHcc
Confidence 356666667777753
No 25
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=41.37 E-value=39 Score=33.41 Aligned_cols=18 Identities=11% Similarity=0.307 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 019341 247 GCLLLLWKVHRRRYFAIR 264 (342)
Q Consensus 247 g~~~~~~~~~~rr~~~~R 264 (342)
.++|+.+++||++.++..
T Consensus 273 vIIYLILRYRRKKKmkKK 290 (299)
T PF02009_consen 273 VIIYLILRYRRKKKMKKK 290 (299)
T ss_pred HHHHHHHHHHHHhhhhHH
Confidence 334666777766655443
No 26
>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]
Probab=39.74 E-value=3.2e+02 Score=29.43 Aligned_cols=64 Identities=14% Similarity=0.173 Sum_probs=42.1
Q ss_pred HHHHHHHH---HHHHHHhhcccccCCCC---------cccchh-hHHhhhhhhhhhhhhccChhhHHHHHHHHHHHHH
Q 019341 131 GRLSRWVE---NRLCRAYAQFLCDGTGS---------IWVEEN-DIWNDLEGHELMKIFELDNPVYLYTKKRTMETVG 195 (342)
Q Consensus 131 k~v~~~i~---~~Lr~rra~~eCG~~~s---------~~v~e~-dl~~~l~e~~~ke~~~ls~~~f~~l~~~Ale~i~ 195 (342)
.++++++. -.|.+|-+-|+||.-.. +.+++. |+++..+.-+.+ .-.|++-.|+++-.++.++++
T Consensus 213 ~~laeRl~e~~y~vtDR~~f~lcgrKpDHkngqhfiIP~~~~sld~se~~k~ar~k-lq~l~n~~FeeL~mD~yDEvd 289 (669)
T KOG0818|consen 213 HELAERLVEIQYELTDRLAFYLCGRKPDHKNGQHFIIPQMADSLDLSELAKAAKKK-LQSLSNHLFEELAMDVYDEVD 289 (669)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCcceeccccccchhHHHHHHHHHHH-HhhcchhhHHHHHHHHHHHHh
Confidence 34555555 45999999999987541 234555 666655532211 124677789999999998873
No 27
>PF06864 PAP_PilO: Pilin accessory protein (PilO); InterPro: IPR009663 This family consists of several enterobacterial PilO proteins. The function of PilO is unknown although it has been suggested that it is a cytoplasmic protein in the absence of other Pil proteins, but PilO protein is translocated to the outer membrane in the presence of other Pil proteins. Alternatively, PilO protein may form a complex with other Pil protein(s). PilO has been predicted to function as a component of the pilin transport apparatus and thin-pilus basal body []. This family does not seem to be related to IPR007445 from INTERPRO.
Probab=37.35 E-value=65 Score=32.78 Aligned_cols=19 Identities=32% Similarity=0.308 Sum_probs=15.8
Q ss_pred hhhhHHHHhhccCCCCCccc
Q 019341 312 PVIWKKVFFLCPFTRPSFNL 331 (342)
Q Consensus 312 ~~LWkkV~kvVE~~~~~~~~ 331 (342)
...|.+|..+. ++.|.||+
T Consensus 275 ~dF~~~~~~l~-~~~p~f~~ 293 (414)
T PF06864_consen 275 ADFIRRVRELF-GDTPVFNL 293 (414)
T ss_pred HHHHHHHHHHh-cCCCeEEe
Confidence 57888998877 88999986
No 28
>smart00032 CCP Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat (SCR). The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. A missense mutation in seventh CCP domain causes deficiency of the b subunit of factor XIII.
Probab=37.30 E-value=19 Score=24.59 Aligned_cols=20 Identities=40% Similarity=0.783 Sum_probs=16.5
Q ss_pred eecCCCceecC---CccccCchh
Q 019341 107 LECFHGYRKHG---KLCVEDGDI 126 (342)
Q Consensus 107 l~C~~gfvl~~---p~CvpD~ek 126 (342)
+.|++||.+.+ -+|..|+..
T Consensus 28 ~~C~~Gy~l~g~~~~~C~~~g~W 50 (57)
T smart00032 28 YSCNPGYTLIGSSTITCLEDGTW 50 (57)
T ss_pred EEcCCCCEEcCCCeeEECCCCEE
Confidence 49999999988 678888754
No 29
>cd00033 CCP Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system. SUSHI repeats (short complement-like repeat, SCR) are abundant in complement control proteins. The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. Typically, 2 to 4 modules contribute to a binding site, implying that the orientation of the modules to each other is critical for function.
Probab=37.21 E-value=18 Score=24.97 Aligned_cols=20 Identities=35% Similarity=0.742 Sum_probs=16.3
Q ss_pred eecCCCceecC---CccccCchh
Q 019341 107 LECFHGYRKHG---KLCVEDGDI 126 (342)
Q Consensus 107 l~C~~gfvl~~---p~CvpD~ek 126 (342)
+.|++||.+.+ -+|..|+..
T Consensus 27 ~~C~~Gy~~~g~~~~~C~~~g~W 49 (57)
T cd00033 27 YSCNEGYTLVGSSTITCTENGGW 49 (57)
T ss_pred EECCCCCeEeCCCeeEECCCCeE
Confidence 49999999987 578887764
No 30
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=36.60 E-value=36 Score=27.47 Aligned_cols=22 Identities=14% Similarity=0.208 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 019341 253 WKVHRRRYFAIRVEELYHQVCE 274 (342)
Q Consensus 253 ~~~~~rr~~~~Rv~eLV~~vld 274 (342)
+.-|++...++|+.+|.+.+.|
T Consensus 27 ~ieYrk~~rqrkId~li~RIre 48 (81)
T PF00558_consen 27 YIEYRKIKRQRKIDRLIERIRE 48 (81)
T ss_dssp ------------CHHHHHHHHC
T ss_pred HHHHHHHHHHHhHHHHHHHHHc
Confidence 3344444445666666554433
No 31
>PRK09458 pspB phage shock protein B; Provisional
Probab=35.52 E-value=1.2e+02 Score=24.21 Aligned_cols=33 Identities=18% Similarity=0.252 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHH
Q 019341 240 PVCSLLVGCLLLLWKVHRRRY--------FAIRVEELYHQV 272 (342)
Q Consensus 240 ~~~~lilg~~~~~~~~~~rr~--------~~~Rv~eLV~~v 272 (342)
+++++++|-+|+..-|+.|++ +..+.++|++.+
T Consensus 11 iiF~ifVaPiWL~LHY~sk~~~~~~Ls~~d~~~L~~L~~~A 51 (75)
T PRK09458 11 TIFVLFVAPIWLWLHYRSKRQGSQGLSQEEQQRLAQLTEKA 51 (75)
T ss_pred HHHHHHHHHHHHHHhhcccccCCCCCCHHHHHHHHHHHHHH
Confidence 345566666666544443332 344556666553
No 32
>PRK14758 hypothetical protein; Provisional
Probab=35.38 E-value=66 Score=20.65 Aligned_cols=18 Identities=6% Similarity=0.132 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 019341 232 STHALIIVPVCSLLVGCL 249 (342)
Q Consensus 232 ~~~~l~I~~~~~lilg~~ 249 (342)
.||++.++.+++++-|++
T Consensus 3 ~RYrFEliLivlIlCali 20 (27)
T PRK14758 3 GRYRFEFILIILILCALI 20 (27)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 355555544444444443
No 33
>PRK11246 hypothetical protein; Provisional
Probab=35.17 E-value=1.7e+02 Score=27.76 Aligned_cols=29 Identities=21% Similarity=0.125 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019341 227 IHQWVSTHALIIVPVCSLLVGCLLLLWKV 255 (342)
Q Consensus 227 ~r~~I~~~~l~I~~~~~lilg~~~~~~~~ 255 (342)
.|+..+=||..|+.+|+.++.++..-+.+
T Consensus 4 ~~~~fRl~r~~iiliclallv~l~~g~s~ 32 (218)
T PRK11246 4 AKLKFRLHRTAIVLICLALLVALMQGASW 32 (218)
T ss_pred hHHHhHHHHHHHHHHHHHHHHHHHhchhh
Confidence 34454557877877777777766554444
No 34
>PF07127 Nodulin_late: Late nodulin protein; InterPro: IPR009810 This family consists of several plant specific late nodulin sequences which are homologous to the Pisum sativum (Garden pea) ENOD3 protein. ENOD3 is expressed in the late stages of root nodule formation and contains two pairs of cysteine residues toward the proteins C terminus which may be involved in metal-binding [].; GO: 0046872 metal ion binding, 0009878 nodule morphogenesis
Probab=30.75 E-value=93 Score=22.61 Aligned_cols=26 Identities=19% Similarity=0.571 Sum_probs=18.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCccCCCCceecCCc-eecCCCc
Q 019341 73 SKPFCDSNLLLDSPQSPTDSCEPCPSNGECHQGK-LECFHGY 113 (342)
Q Consensus 73 ~~pfCds~~~~~~~~~~~~~C~PCP~ha~C~~g~-l~C~~gf 113 (342)
....|.++. -||.+ |.... .+|..|+
T Consensus 26 ~~~~C~~d~-------------DCp~~--c~~~~~~kCi~~~ 52 (54)
T PF07127_consen 26 AIIPCKTDS-------------DCPKD--CPPPFIPKCINNI 52 (54)
T ss_pred CCcccCccc-------------cCCCC--CCCCcCcEeCcCC
Confidence 467899984 57877 77764 3777653
No 35
>TIGR00964 secE_bact preprotein translocase, SecE subunit, bacterial. This model represents exclusively the bacterial (and some organellar) SecE protein. SecE is part of the core heterotrimer, SecYEG, of the Sec preprotein translocase system. Other components are the ATPase SecA, a cytosolic chaperone SecB, and an accessory complex of SecDF and YajC.
Probab=30.14 E-value=1e+02 Score=22.51 Aligned_cols=21 Identities=24% Similarity=0.437 Sum_probs=16.0
Q ss_pred CCChhhHHHHHHHHHHHHHHH
Q 019341 39 FPSKQDLLRLITVVAIASSVA 59 (342)
Q Consensus 39 ~~~~~~~~~l~~vl~ia~~~a 59 (342)
.|+|+|..+...+.++.+++.
T Consensus 17 WPt~~e~~~~t~~Vi~~~~~~ 37 (55)
T TIGR00964 17 WPSRKELITYTIVVIVFVIFF 37 (55)
T ss_pred CcCHHHHHhHHHHHHHHHHHH
Confidence 699999999877666666554
No 36
>PF10144 SMP_2: Bacterial virulence factor haemolysin; InterPro: IPR019305 This entry represents a group of bacterial proteins that are membrane proteins that effect the expression of haemolysin under anaerobic conditions [].
Probab=30.06 E-value=4e+02 Score=24.94 Aligned_cols=17 Identities=29% Similarity=0.346 Sum_probs=11.0
Q ss_pred hHHHHhhccCCCCCccccee
Q 019341 315 WKKVFFLCPFTRPSFNLGFI 334 (342)
Q Consensus 315 WkkV~kvVE~~~~~~~~~~~ 334 (342)
+.=||.+..+|.+ +||+
T Consensus 126 qq~VepI~~~~~~---~Gfl 142 (210)
T PF10144_consen 126 QQIVEPIYSDDGP---LGFL 142 (210)
T ss_pred ceEEEEeccCCCe---eEEE
Confidence 4457776666665 7775
No 37
>PF10576 EndIII_4Fe-2S: Iron-sulfur binding domain of endonuclease III; InterPro: IPR003651 Endonuclease III (4.2.99.18 from EC) is a DNA repair enzyme which removes a number of damaged pyrimidines from DNA via its glycosylase activity and also cleaves the phosphodiester backbone at apurinic / apyrimidinic sites via a beta-elimination mechanism [, ]. The structurally related DNA glycosylase MutY recognises and excises the mutational intermediate 8-oxoguanine-adenine mispair []. The 3-D structures of Escherichia coli endonuclease III [] and catalytic domain of MutY [] have been determined. The structures contain two all-alpha domains: a sequence-continuous, six-helix domain (residues 22-132) and a Greek-key, four-helix domain formed by one N-terminal and three C-terminal helices (residues 1-21 and 133-211) together with the [Fe4S4] cluster. The cluster is bound entirely within the C-terminal loop by four cysteine residues with a ligation pattern Cys-(Xaa)6-Cys-(Xaa)2-Cys-(Xaa)5-Cys which is distinct from all other known Fe4S4 proteins. This structural motif is referred to as a [Fe4S4] cluster loop (FCL) []. Two DNA-binding motifs have been proposed, one at either end of the interdomain groove: the helix-hairpin-helix (HhH) and FCL motifs. The primary role of the iron-sulphur cluster appears to involve positioning conserved basic residues for interaction with the DNA phosphate backbone by forming the loop of the FCL motif [, ]. The iron-sulphur cluster loop (FCL) is also found in DNA-(apurinic or apyrimidinic site) lyase, a subfamily of endonuclease III. The enzyme has both apurinic and apyrimidinic endonuclease activity and a DNA N-glycosylase activity. It cuts damaged DNA at cytosines, thymines and guanines, and acts on the damaged strand 5' of the damaged site. The enzyme binds a 4Fe-4S cluster which is not important for the catalytic activity, but is probably involved in the alignment of the enzyme along the DNA strand.; GO: 0004519 endonuclease activity, 0051539 4 iron, 4 sulfur cluster binding; PDB: 1VRL_A 1RRQ_A 3G0Q_A 3FSQ_A 1RRS_A 3FSP_A 2ABK_A 1KG7_A 1KG2_A 1MUN_A ....
Probab=29.89 E-value=20 Score=20.59 Aligned_cols=13 Identities=38% Similarity=1.017 Sum_probs=8.1
Q ss_pred CCCCccCCCCcee
Q 019341 90 TDSCEPCPSNGEC 102 (342)
Q Consensus 90 ~~~C~PCP~ha~C 102 (342)
.|.|.-||-+..|
T Consensus 5 ~P~C~~Cpl~~~C 17 (17)
T PF10576_consen 5 KPKCEECPLADYC 17 (17)
T ss_dssp S--GGG-TTGGG-
T ss_pred CCccccCCCcccC
Confidence 6899999999887
No 38
>PF13268 DUF4059: Protein of unknown function (DUF4059)
Probab=29.45 E-value=2e+02 Score=22.78 Aligned_cols=37 Identities=27% Similarity=0.520 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Q 019341 236 LIIVPVCSLLVGCLLLLWKVHRRRY--FAIRVEELYHQV 272 (342)
Q Consensus 236 l~I~~~~~lilg~~~~~~~~~~rr~--~~~Rv~eLV~~v 272 (342)
+.++.+...+++.+|+.|+-.+|+- .++|...|++..
T Consensus 13 L~ls~i~V~~~~~~wi~~Ra~~~~DKT~~eRQa~LyD~l 51 (72)
T PF13268_consen 13 LLLSSILVLLVSGIWILWRALRKKDKTAKERQAFLYDML 51 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence 4455556667777777776665543 356666788874
No 39
>PF04891 NifQ: NifQ; InterPro: IPR006975 NifQ is involved in early stages of the biosynthesis of the iron-molybdenum cofactor (FeMo-co) [], which is an integral part of the active site of dinitrogenase []. The conserved C-terminal cysteine residues may be involved in metal binding [].; GO: 0030151 molybdenum ion binding, 0009399 nitrogen fixation
Probab=29.35 E-value=63 Score=29.34 Aligned_cols=57 Identities=19% Similarity=0.324 Sum_probs=31.4
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHHH----hhhcCCCCCCCCCCCCCCCCCCCCCCCccCCCCceecC
Q 019341 39 FPSKQDLLRLITVVAIASSVALTCNYLA----NFLNSTSKPFCDSNLLLDSPQSPTDSCEPCPSNGECHQ 104 (342)
Q Consensus 39 ~~~~~~~~~l~~vl~ia~~~a~~c~~l~----~~l~~~~~pfCds~~~~~~~~~~~~~C~PCP~ha~C~~ 104 (342)
++++.|+-+|+.--|=.-++. |.=+ +|||+. -|..+. -.-=..|+|.-|..++.|+.
T Consensus 107 L~~R~eLs~Lm~r~Fp~Laa~---N~~~MrWKKFfYrq---lCe~eG---~~~C~aPsC~~C~D~~~CFG 167 (167)
T PF04891_consen 107 LRSRAELSALMRRHFPPLAAR---NTRNMRWKKFFYRQ---LCEREG---LYLCRAPSCEECSDYAVCFG 167 (167)
T ss_pred CCCHHHHHHHHHHHhHHHHHh---ccCCCcHHHHHHHH---HHHHcC---CCcCCCCCCCCcCCHhhcCC
Confidence 467777777666554444333 2211 155532 233321 11113489999999999984
No 40
>PHA02639 EEV host range protein; Provisional
Probab=28.85 E-value=39 Score=33.19 Aligned_cols=53 Identities=21% Similarity=0.385 Sum_probs=33.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCc--cCC----CCce----------ecCCc--eecCCCceecC---CccccCchhh
Q 019341 72 TSKPFCDSNLLLDSPQSPTDSCE--PCP----SNGE----------CHQGK--LECFHGYRKHG---KLCVEDGDIN 127 (342)
Q Consensus 72 ~~~pfCds~~~~~~~~~~~~~C~--PCP----~ha~----------C~~g~--l~C~~gfvl~~---p~CvpD~ek~ 127 (342)
+..-.|..+. .-....|.|+ .|| +||. .++.. ++|++||.+.| -+|..|+...
T Consensus 126 ~~~~~C~~dG---~WS~~~P~C~~i~C~~P~i~nG~v~~~~~~~~~~yg~~V~fsC~~GY~L~Gs~~~tC~~nG~Ws 199 (295)
T PHA02639 126 NEKITCIQDK---SWKPDPPICKMINCRFPALQNGYINGIPSNKKFYYKTRVGFSCKSGFDLVGEKYSTCNINATWF 199 (295)
T ss_pred CCeEEECCCC---eECCCCCeeeeEEeCCCCCCCCceEcccCCCceecCCEEEEEcCCCCeEcCCCcEEECCCCeEC
Confidence 4556786431 1123467886 575 2443 23333 49999999998 6788887653
No 41
>COG3116 FtsL Cell division protein [Cell division and chromosome partitioning]
Probab=28.39 E-value=3.5e+02 Score=22.86 Aligned_cols=64 Identities=20% Similarity=0.267 Sum_probs=28.1
Q ss_pred ccCcchHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH------HHHHhHhhh
Q 019341 220 YKPLSCRIHQW-VSTHALIIVPVCSLLVGCLLLLWKVHRRRYFAIR--VEELYHQVCE------ILEENALMS 283 (342)
Q Consensus 220 ~lpl~C~~r~~-I~~~~l~I~~~~~lilg~~~~~~~~~~rr~~~~R--v~eLV~~vld------~L~~~al~~ 283 (342)
+.||.=-+..- +...++.++.++++++..+-+.+.-++.|..-.. ...++.+.++ +|+|.++..
T Consensus 6 r~~l~~ii~~dl~~~~kl~l~LLi~ivlsAi~vv~~tH~tRqL~~e~~~~~~er~~L~~EwrnLilEe~tl~~ 78 (105)
T COG3116 6 RYPLPGIIGDDLLTSGKLPLLLLIAIVLSAIGVVYTTHHTRQLIAELEQLVLERDALNIEWRNLILEENTLGD 78 (105)
T ss_pred CCchhHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHhhhh
Confidence 34444444433 3344555555444444444333434444433222 2234555555 346666643
No 42
>cd03580 NTR_Sfrp1_like NTR domain, Secreted frizzled-related protein (Sfrp) 1-like subfamily; composed of proteins similar to human Sfrp1, Sfrp2 and Sfrp5. Sfrps are soluble proteins containing an NTR domain C-terminal to a cysteine-rich Frizzled domain. They show diverse functions and are thought to work in Wnt signaling indirectly, as modulators or antagonists by binding Wnt ligands, and directly, via the Wnt receptor, Frizzled. They participate in regulating the patterning along the anteroposterior axis in vertebrates. Human Sfrp1 has been found frequently to be downregulated in breast cancer and is associated with disease progression and poor prognosis.
Probab=28.31 E-value=19 Score=30.83 Aligned_cols=28 Identities=21% Similarity=0.481 Sum_probs=23.5
Q ss_pred CCCCccCCCCceecCCce--ecCCCceecC
Q 019341 90 TDSCEPCPSNGECHQGKL--ECFHGYRKHG 117 (342)
Q Consensus 90 ~~~C~PCP~ha~C~~g~l--~C~~gfvl~~ 117 (342)
++.|.+|+..+.+++..+ -|..||+.+.
T Consensus 1 ~~~C~~C~~~~~~~~~l~~~fC~sDFvik~ 30 (126)
T cd03580 1 PKVCPPCENEEESAKTLLDNFCASDFALKV 30 (126)
T ss_pred CCcCCCcCcchhhHHHHHHHhccccEEEEE
Confidence 368999999998866554 8999999887
No 43
>PRK07597 secE preprotein translocase subunit SecE; Reviewed
Probab=27.65 E-value=1.2e+02 Score=22.77 Aligned_cols=23 Identities=22% Similarity=0.416 Sum_probs=17.0
Q ss_pred CCCChhhHHHHHHHHHHHHHHHH
Q 019341 38 LFPSKQDLLRLITVVAIASSVAL 60 (342)
Q Consensus 38 ~~~~~~~~~~l~~vl~ia~~~a~ 60 (342)
-.|+++|..+...+.++++++..
T Consensus 25 ~WPs~~e~~~~t~~Vi~~~~~~~ 47 (64)
T PRK07597 25 TWPTRKELVRSTIVVLVFVAFFA 47 (64)
T ss_pred cCcCHHHHHhHHHHHHHHHHHHH
Confidence 36999999998777766665553
No 44
>PF12729 4HB_MCP_1: Four helix bundle sensory module for signal transduction; InterPro: IPR024478 This entry represents a four-helix bundle that operates as a ubiquitous sensory module in prokaryotic signal-transduction, which is known as four-helix bundles methyl-accepting chemotaxis protein (4HB_MCP) domain. The 4HB_MCP is always found between two predicted transmembrane helices indicating that it detects only extracellular signals. In many cases the domain is associated with a cytoplasmic HAMP domain suggesting that most proteins carrying the bundle might share the mechanism of transmembrane signalling which is well-characterised in E coli chemoreceptors [].
Probab=27.50 E-value=3.2e+02 Score=22.46 Aligned_cols=12 Identities=33% Similarity=0.548 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHH
Q 019341 260 YFAIRVEELYHQ 271 (342)
Q Consensus 260 ~~~~Rv~eLV~~ 271 (342)
.....+.++++.
T Consensus 32 ~~~~~~~~i~~~ 43 (181)
T PF12729_consen 32 QINQNVEEIYEN 43 (181)
T ss_pred HHHHHHHHHHHh
Confidence 333444444444
No 45
>PF07543 PGA2: Protein trafficking PGA2; InterPro: IPR011431 A Saccharomyces cerevisiae (Baker's yeast) member of this family (PGA2, P53903 from SWISSPROT) is a single pass membrane protein which has been implicated in protein trafficking [, ].
Probab=27.42 E-value=1.5e+02 Score=26.04 Aligned_cols=35 Identities=23% Similarity=0.236 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019341 244 LLVGCLLLLWKVHRRRYFAIRVEELYHQVCEILEE 278 (342)
Q Consensus 244 lilg~~~~~~~~~~rr~~~~Rv~eLV~~vld~L~~ 278 (342)
+|||.+++++-++.+...+.++.++-.+..+.-++
T Consensus 22 iIVggYiLlRPY~~kl~~k~~~kq~eke~ae~e~~ 56 (140)
T PF07543_consen 22 IIVGGYILLRPYFRKLAAKDQKKQLEKEKAEREAE 56 (140)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455545555555666666677766655555443
No 46
>PF00084 Sushi: Sushi domain (SCR repeat); InterPro: IPR000436 Sushi domains are also known as Complement control protein (CCP) modules, or short consensus repeats (SCR), exist in a wide variety of complement and adhesion proteins. The structure is known for this domain, it is based on a beta-sandwich arrangement; one face made up of three beta-strands hydrogen-bonded to form a triple-stranded region at its centre and the other face formed from two separate beta-strands []. CD21 (also called C3d receptor, CR2, Epstein Barr virus receptor or EBV-R) is the receptor for EBV and for C3d, C3dg and iC3b. Complement components may activate B cells through CD21. CD21 is part of a large signal-transduction complex that also involves CD19, CD81, and Leu13. Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Complement decay-accelerating factor (Antigen CD55) belongs to the Cromer blood group system and is associated with Cr(a), Dr(a), Es(a), Tc(a/b/c), Wd(a), WES(a/b), IFC and UMC antigens. Complement receptor type 1 (C3b/C4b receptor) (Antigen CD35) belongs to the Knops blood group system and is associated with Kn(a/b), McC(a), Sl(a) and Yk(a) antigens. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; PDB: 1HFH_A 1HFI_A 1E5G_A 2UWN_A 2V8E_A 2XWB_H 3HS0_I 2OK5_A 2XWJ_J 3HRZ_D ....
Probab=27.23 E-value=24 Score=24.33 Aligned_cols=20 Identities=30% Similarity=0.722 Sum_probs=15.9
Q ss_pred eecCCCceecC---CccccCchh
Q 019341 107 LECFHGYRKHG---KLCVEDGDI 126 (342)
Q Consensus 107 l~C~~gfvl~~---p~CvpD~ek 126 (342)
+.|+.||.+.+ -+|..|+..
T Consensus 27 ~~C~~Gy~~~g~~~~~C~~~g~W 49 (56)
T PF00084_consen 27 FSCNPGYELSGSSTITCQSNGQW 49 (56)
T ss_dssp EEESTTEEEESSSEEEEETTSEE
T ss_pred EcCCCCCEecCCCEEEECCCCEE
Confidence 59999999977 678777654
No 47
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=26.83 E-value=2.5e+02 Score=23.21 Aligned_cols=37 Identities=19% Similarity=0.161 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019341 230 WVSTHALIIVPVCSLLVGCLLLLWKVHRRRYFAIRVEEL 268 (342)
Q Consensus 230 ~I~~~~l~I~~~~~lilg~~~~~~~~~~rr~~~~Rv~eL 268 (342)
+|+.|--.|..++.++.+++ .+.+.++.+.+.++++|
T Consensus 4 ~~~~~w~ii~a~~~~~~~~~--~~~l~~~~a~~~~~~~l 40 (106)
T PF10805_consen 4 FIKKNWGIIWAVFGIAGGIF--WLWLRRTYAKREDIEKL 40 (106)
T ss_pred HHHhCcHHHHHHHHHHHHHH--HHHHHHhhccHHHHHHH
Confidence 34454445555544444444 33344444555666665
No 48
>PRK15428 putative propanediol utilization protein PduM; Provisional
Probab=26.52 E-value=57 Score=29.62 Aligned_cols=30 Identities=20% Similarity=0.305 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHhHhhhcCCCCCCCCeeecccccc
Q 019341 264 RVEELYHQVCEILEENALMSKSVNGECEPWVVASRLRD 301 (342)
Q Consensus 264 Rv~eLV~~vld~L~~~al~~~~~~~~~eP~I~~~qLRD 301 (342)
-.+.||++|..+|++++...- -++++|||+
T Consensus 5 ~~~~iV~~Vv~RLk~Ra~~~~--------~ls~~ql~~ 34 (163)
T PRK15428 5 MLQRIVEEVVARLQRRAQSTA--------TLSVAQLRD 34 (163)
T ss_pred HHHHHHHHHHHHHHHHhhceE--------EEEHHHccC
Confidence 367899999999998875432 477777777
No 49
>PF10588 NADH-G_4Fe-4S_3: NADH-ubiquinone oxidoreductase-G iron-sulfur binding region; InterPro: IPR019574 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This entry describes the G subunit (one of 14 subunits, A to N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria while translocating protons, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This family does not contain related subunits from formate dehydrogenase complexes. This entry represents the iron-sulphur binding domain of the G subunit.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3M9S_C 2FUG_L 3IAS_L 2YBB_3 3IAM_3 3I9V_3.
Probab=26.24 E-value=30 Score=23.96 Aligned_cols=16 Identities=31% Similarity=0.866 Sum_probs=8.2
Q ss_pred CCCCCCccCCCCceec
Q 019341 88 SPTDSCEPCPSNGECH 103 (342)
Q Consensus 88 ~~~~~C~PCP~ha~C~ 103 (342)
.++-.|..|+.+|.|.
T Consensus 11 ~H~~dC~~C~~~G~Ce 26 (41)
T PF10588_consen 11 NHPLDCPTCDKNGNCE 26 (41)
T ss_dssp T----TTT-TTGGG-H
T ss_pred CCCCcCcCCCCCCCCH
Confidence 3567899999999984
No 50
>KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=25.27 E-value=2.3e+02 Score=31.05 Aligned_cols=39 Identities=26% Similarity=0.129 Sum_probs=18.8
Q ss_pred CCCCCCCccCCCCCCCCC--ChhhHHHHHHHHHHHHHHHHHH
Q 019341 23 SSSSSWSWMTEPPQSLFP--SKQDLLRLITVVAIASSVALTC 62 (342)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~--~~~~~~~l~~vl~ia~~~a~~c 62 (342)
++|+.-++.-||--.-|- .--+.-.+-+. +..+++.++.
T Consensus 22 ~~ss~~s~~~ep~~~~~~~~~~m~vr~~w~f-l~ss~~tf~~ 62 (1103)
T KOG1420|consen 22 SSSSSSSSVHEPKMDALIIPVTMEVRMWWAF-LASSMVTFFG 62 (1103)
T ss_pred CcccccccccCCccCcccchhHHHHHHHHHH-HHHHHHHHHH
Confidence 334444456777665553 33444444443 3345555444
No 51
>smart00181 EGF Epidermal growth factor-like domain.
Probab=24.17 E-value=72 Score=20.04 Aligned_cols=25 Identities=32% Similarity=0.805 Sum_probs=18.0
Q ss_pred ccCCCCceecCC--c-e-ecCCCceecCCcc
Q 019341 94 EPCPSNGECHQG--K-L-ECFHGYRKHGKLC 120 (342)
Q Consensus 94 ~PCP~ha~C~~g--~-l-~C~~gfvl~~p~C 120 (342)
.+|..| .|.+. . . .|..||... +.|
T Consensus 6 ~~C~~~-~C~~~~~~~~C~C~~g~~g~-~~C 34 (35)
T smart00181 6 GPCSNG-TCINTPGSYTCSCPPGYTGD-KRC 34 (35)
T ss_pred CCCCCC-EEECCCCCeEeECCCCCccC-Ccc
Confidence 478888 99873 3 3 899999764 444
No 52
>COG0690 SecE Preprotein translocase subunit SecE [Intracellular trafficking and secretion]
Probab=23.94 E-value=1.6e+02 Score=22.90 Aligned_cols=22 Identities=18% Similarity=0.536 Sum_probs=14.7
Q ss_pred CCCChhhHHHHHHHHHHHHHHH
Q 019341 38 LFPSKQDLLRLITVVAIASSVA 59 (342)
Q Consensus 38 ~~~~~~~~~~l~~vl~ia~~~a 59 (342)
-+|+|+|..+...+.++-.++.
T Consensus 35 ~WPsrke~~~~t~~Vl~~v~~~ 56 (73)
T COG0690 35 VWPTRKELIRSTLIVLVVVAFF 56 (73)
T ss_pred cCCCHHHHHHHHHHHHHHHHHH
Confidence 3699999988766555444433
No 53
>smart00051 DSL delta serrate ligand.
Probab=23.90 E-value=60 Score=24.60 Aligned_cols=40 Identities=23% Similarity=0.537 Sum_probs=26.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCcc---CCCCceecC-CceecCCCce
Q 019341 72 TSKPFCDSNLLLDSPQSPTDSCEP---CPSNGECHQ-GKLECFHGYR 114 (342)
Q Consensus 72 ~~~pfCds~~~~~~~~~~~~~C~P---CP~ha~C~~-g~l~C~~gfv 114 (342)
.-...||.+. ++.. =.-.|.| +--|..|.. |...|.+||.
T Consensus 16 ~~rv~C~~~~-yG~~--C~~~C~~~~d~~~~~~Cd~~G~~~C~~Gw~ 59 (63)
T smart00051 16 QIRVTCDENY-YGEG--CNKFCRPRDDFFGHYTCDENGNKGCLEGWM 59 (63)
T ss_pred EEEeeCCCCC-cCCc--cCCEeCcCccccCCccCCcCCCEecCCCCc
Confidence 3456788875 2221 1356766 678899987 5789999985
No 54
>PF07988 LMSTEN: LMSTEN motif; InterPro: IPR012642 Proteins containing the Wos2 domain are involved in the regulation of the cell cycle [] and are Myb-related transcriptional activators. ; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 2AGH_A 1SB0_B.
Probab=23.79 E-value=88 Score=22.58 Aligned_cols=21 Identities=14% Similarity=0.124 Sum_probs=7.6
Q ss_pred cCCccccCchhhHHHHHHHHH
Q 019341 116 HGKLCVEDGDINETAGRLSRW 136 (342)
Q Consensus 116 ~~p~CvpD~ek~~~~k~v~~~ 136 (342)
+.+.+..|++|+.++|.+--.
T Consensus 16 q~~~~dddpdkekrikelell 36 (48)
T PF07988_consen 16 QQPFIDDDPDKEKRIKELELL 36 (48)
T ss_dssp -----------HHHHHHHHHH
T ss_pred hccccCCChhHHHHHHHHHHH
Confidence 346788999999999987443
No 55
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=23.28 E-value=1.1e+02 Score=26.37 Aligned_cols=26 Identities=31% Similarity=0.255 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019341 236 LIIVPVCSLLVGCLLLLWKVHRRRYF 261 (342)
Q Consensus 236 l~I~~~~~lilg~~~~~~~~~~rr~~ 261 (342)
++|+++++-++|++++.+++.+|+++
T Consensus 68 ~Ii~gv~aGvIg~Illi~y~irR~~K 93 (122)
T PF01102_consen 68 GIIFGVMAGVIGIILLISYCIRRLRK 93 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHS-
T ss_pred ehhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44444444455555444444444433
No 56
>PHA02673 ORF109 EEV glycoprotein; Provisional
Probab=23.26 E-value=1.4e+02 Score=27.13 Aligned_cols=22 Identities=23% Similarity=0.298 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 019341 45 LLRLITVVAIASSVALTCNYLA 66 (342)
Q Consensus 45 ~~~l~~vl~ia~~~a~~c~~l~ 66 (342)
|+|+.++++|.+.+|.+..+..
T Consensus 35 ~~Ri~~~iSIisL~~l~v~LaL 56 (161)
T PHA02673 35 FFRLMAAIAIIVLAILVVILAL 56 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 7888888888888886655443
No 57
>PF10500 SR-25: Nuclear RNA-splicing-associated protein; InterPro: IPR019532 SR-25, otherwise known as ADP-ribosylation factor-like factor 6-interacting protein 4, is expressed in virtually all tissue types. At the N terminus there is a repeat of serine-arginine (SR repeat), and towards the middle of the protein there are clusters of both serines and of basic amino acids. The presence of many nuclear localisation signals strongly implies that this is a nuclear protein that may contribute to RNA splicing []. SR-25 is also implicated, along with heat-shock-protein-27, as a mediator in the Rac1 (GTPase ras-related C3 botulinum toxin substrate 1; also see IPR019093 from INTERPRO) signalling pathway [].
Probab=23.07 E-value=57 Score=31.02 Aligned_cols=9 Identities=11% Similarity=0.128 Sum_probs=4.9
Q ss_pred hccChhhHH
Q 019341 176 FELDNPVYL 184 (342)
Q Consensus 176 ~~ls~~~f~ 184 (342)
.-|+.+||+
T Consensus 158 ~PmTkEEye 166 (225)
T PF10500_consen 158 APMTKEEYE 166 (225)
T ss_pred CCCCHHHHH
Confidence 356665554
No 58
>KOG2903 consensus Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=22.42 E-value=54 Score=32.22 Aligned_cols=28 Identities=32% Similarity=0.458 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHhhcccccCCCCcccchhhH
Q 019341 132 RLSRWVENRLCRAYAQFLCDGTGSIWVEENDI 163 (342)
Q Consensus 132 ~v~~~i~~~Lr~rra~~eCG~~~s~~v~e~dl 163 (342)
+-.++++..|.+.++-|+||+. +||.|+
T Consensus 210 e~LDr~E~vL~~~~~~f~~G~~----LTeaDi 237 (319)
T KOG2903|consen 210 EALDRCEDVLGKNRKYFLCGDT----LTEADI 237 (319)
T ss_pred HHHHHHHHHHhcccceEeeccc----cchhhe
Confidence 3356777889999999999987 456554
No 59
>PF00584 SecE: SecE/Sec61-gamma subunits of protein translocation complex; InterPro: IPR001901 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone protein (SecB), an ATPase (SecA), an integral membrane complex (SecCY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. The chaperone protein SecB [] is a highly acidic homotetrameric protein that exists as a "dimer of dimers" in the bacterial cytoplasm. SecB maintains preproteins in an unfolded state after translation, and targets these to the peripheral membrane protein ATPase SecA for secretion []. SecE, part of the main SecYEG translocase complex, is ~106 residues in length, and spans the inner membrane of the Gram-negative bacterial envelope. Together with SecY and SecG, SecE forms a multimeric channel through which preproteins are translocated, using both proton motive forces and ATP-driven secretion. The latter is mediated by SecA. In eukaryotes, the evolutionary related protein sec61-gamma plays a role in protein translocation through the endoplasmic reticulum; it is part of a trimeric complex that also consist of sec61-alpha and beta []. Both secE and sec61-gamma are small proteins of about 60 to 90 amino acids that contain a single transmembrane region at their C-terminal extremity (Escherichia coli secE is an exception, in that it possess an extra N-terminal segment of 60 residues that contains two additional transmembrane domains) [].; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0016020 membrane; PDB: 3J01_B 2WW9_B 2WWA_B 3DL8_C 2WWB_B 3DIN_G 2ZJS_E 2ZQP_E.
Probab=22.34 E-value=2.1e+02 Score=20.63 Aligned_cols=21 Identities=24% Similarity=0.505 Sum_probs=14.3
Q ss_pred CCChhhHHHHHHHHHHHHHHH
Q 019341 39 FPSKQDLLRLITVVAIASSVA 59 (342)
Q Consensus 39 ~~~~~~~~~l~~vl~ia~~~a 59 (342)
.|+++|+.+.-.+.++..++.
T Consensus 18 WP~~~e~~~~t~~Vl~~~~i~ 38 (57)
T PF00584_consen 18 WPSRKELLKSTIIVLVFVIIF 38 (57)
T ss_dssp CCCTHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHH
Confidence 599999998766555544433
No 60
>KOG4289 consensus Cadherin EGF LAG seven-pass G-type receptor [Signal transduction mechanisms]
Probab=22.30 E-value=48 Score=39.61 Aligned_cols=36 Identities=33% Similarity=0.966 Sum_probs=25.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCC--ccCCCCceecC--C--ceecCCCceecC
Q 019341 73 SKPFCDSNLLLDSPQSPTDSC--EPCPSNGECHQ--G--KLECFHGYRKHG 117 (342)
Q Consensus 73 ~~pfCds~~~~~~~~~~~~~C--~PCP~ha~C~~--g--~l~C~~gfvl~~ 117 (342)
+.-||++++ +.| -||-.||.|.. | ..+|.+||.-..
T Consensus 1231 Tgd~CeTei---------DlCYs~pC~nng~C~srEggYtCeCrpg~tGeh 1272 (2531)
T KOG4289|consen 1231 TGDYCETEI---------DLCYSGPCGNNGRCRSREGGYTCECRPGFTGEH 1272 (2531)
T ss_pred Ccccccchh---------HhhhcCCCCCCCceEEecCceeEEecCCccccc
Confidence 345788875 344 49999999986 2 348888887554
No 61
>PF07699 GCC2_GCC3: GCC2 and GCC3; InterPro: IPR011641 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. This entry represents various ephrin type A and B receptors, which have tyrosine kinase activity.
Probab=22.21 E-value=91 Score=21.82 Aligned_cols=31 Identities=19% Similarity=0.479 Sum_probs=18.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCccCCCCceecC
Q 019341 72 TSKPFCDSNLLLDSPQSPTDSCEPCPSNGECHQ 104 (342)
Q Consensus 72 ~~~pfCds~~~~~~~~~~~~~C~PCP~ha~C~~ 104 (342)
..+--|.-+. + +.......|++||.+-+-..
T Consensus 9 ~~C~~Cp~Gt-Y-q~~~g~~~C~~Cp~g~~T~~ 39 (48)
T PF07699_consen 9 NKCQPCPKGT-Y-QDEEGQTSCTPCPPGSTTSS 39 (48)
T ss_pred CccCCCCCCc-c-CCccCCccCccCcCCCccCC
Confidence 4666777775 2 22234458888888865543
No 62
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=22.12 E-value=3.6e+02 Score=24.39 Aligned_cols=34 Identities=21% Similarity=0.198 Sum_probs=24.7
Q ss_pred CCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 019341 33 EPPQSLFPSKQDLLRLITVVAIASSVALTCNYLA 66 (342)
Q Consensus 33 ~~~~~~~~~~~~~~~l~~vl~ia~~~a~~c~~l~ 66 (342)
.-|.++-+.+.-+.|-+.||..+++.+..|+++=
T Consensus 82 ~~~s~~~~d~~~l~R~~~Vl~g~s~l~i~yfvir 115 (163)
T PF06679_consen 82 SRPSPSSPDSPMLKRALYVLVGLSALAILYFVIR 115 (163)
T ss_pred cccCCCcCCccchhhhHHHHHHHHHHHHHHHHHH
Confidence 3444566677778888888888888887776654
No 63
>PF09802 Sec66: Preprotein translocase subunit Sec66; InterPro: IPR018624 Members of this family of proteins are a component of the heterotetrameric Sec62/63 complex composed of SEC62, SEC63, SEC66 and SEC72. The Sec62/63 complex associates with the Sec61 complex to form the Sec complex. Sec 66 is involved in SRP-independent post-translational translocation across the endoplasmic reticulum and functions together with the Sec61 complex and KAR2 in a channel-forming translocon complex. Furthermore, Sec66 is also required for growth at elevated temperatures [, , , ].
Probab=21.80 E-value=1.3e+02 Score=27.99 Aligned_cols=22 Identities=32% Similarity=0.398 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 019341 242 CSLLVGCLLLLWKVHRRRYFAI 263 (342)
Q Consensus 242 ~~lilg~~~~~~~~~~rr~~~~ 263 (342)
+++++|++++++.+||+|+..+
T Consensus 13 ~~vl~~sl~~Fs~~YRkr~~~~ 34 (190)
T PF09802_consen 13 VAVLVGSLATFSSIYRKRKAAK 34 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4566777778888887766543
No 64
>PF12662 cEGF: Complement Clr-like EGF-like
Probab=21.58 E-value=55 Score=20.38 Aligned_cols=15 Identities=27% Similarity=0.705 Sum_probs=11.9
Q ss_pred ecCCCceecC--Ccccc
Q 019341 108 ECFHGYRKHG--KLCVE 122 (342)
Q Consensus 108 ~C~~gfvl~~--p~Cvp 122 (342)
.|.+||.+.+ .+|+.
T Consensus 5 ~C~~Gy~l~~d~~~C~D 21 (24)
T PF12662_consen 5 SCPPGYQLSPDGRSCED 21 (24)
T ss_pred eCCCCCcCCCCCCcccc
Confidence 7999999765 67764
No 65
>PF04882 Peroxin-3: Peroxin-3; InterPro: IPR006966 Peroxin 3 (Pex3p), also known as Peroxisomal biogenesis factor 3, has been identified and characterised as a peroxisomal membrane protein in yeasts and mammals []. Two putative peroxisomal membrane-bound Pex3p homologues have also been found in Arabidopsis thaliana []. They possess a membrane peroxisomal targeting signal. Pex3p is an integral membrane protein of peroxisomes, exposing its N- and C-terminal parts to the cytosol []. Peroxin is involved in peroxisome biosynthesis and integrity; it assembles membrane vesicles before the matrix proteins are translocated. In humans, defects in PEX3 are the cause of peroxisome biogenesis disorders [], which include Zellweger syndrome (ZWS), neonatal adrenoleukodystrophy (NALD), infantile Refsum disease (IRD), and classical rhizomelic chondrodysplasia punctata (RCDP). These are peroxisomal disorders that are the result of proteins failing to be imported into the peroxisome.; GO: 0007031 peroxisome organization, 0005779 integral to peroxisomal membrane; PDB: 3MK4_A 3AJB_A.
Probab=20.92 E-value=63 Score=33.29 Aligned_cols=25 Identities=20% Similarity=0.329 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019341 227 IHQWVSTHALIIVPVCSLLVGCLLL 251 (342)
Q Consensus 227 ~r~~I~~~~l~I~~~~~lilg~~~~ 251 (342)
+|.+++||+..|+...+++.|.+++
T Consensus 4 ~~~f~~Rhr~k~~~~~~v~g~~y~~ 28 (432)
T PF04882_consen 4 LRSFFRRHRRKIIVTGGVVGGGYLL 28 (432)
T ss_dssp -------------------------
T ss_pred ccccccccccccccccccccccccc
Confidence 5788899997666654555554443
No 66
>PHA02831 EEV host range protein; Provisional
Probab=20.87 E-value=78 Score=30.81 Aligned_cols=51 Identities=18% Similarity=0.264 Sum_probs=31.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCc--cCCC----Cce--------ecCCc--eecCCCceecC---CccccCchh
Q 019341 72 TSKPFCDSNLLLDSPQSPTDSCE--PCPS----NGE--------CHQGK--LECFHGYRKHG---KLCVEDGDI 126 (342)
Q Consensus 72 ~~~pfCds~~~~~~~~~~~~~C~--PCP~----ha~--------C~~g~--l~C~~gfvl~~---p~CvpD~ek 126 (342)
+..-.|.++ .+ ....|.|+ .||. ||. .++.. .+|++||.+.| .+|..|+..
T Consensus 119 ~s~~tC~dG--~W--S~~~P~C~~i~C~~P~i~NG~i~~~~~~y~~G~~Vty~C~~GY~L~Gss~~tC~~nG~W 188 (268)
T PHA02831 119 NETVKCINK--QW--VPKYPVCKLIRCKYPALQNGFLNVFEKKFYYGDIVNFKCKKGFILLGSSVSTCDINSIW 188 (268)
T ss_pred CceeEeCCC--cC--CCCCCeeeEeeCCCCCCCCCccccCCCceecCCEEEEEcCCCCEECCCccEEECCCCeE
Confidence 555678432 12 33467885 5754 332 23333 38999999998 578777755
No 67
>PF06247 Plasmod_Pvs28: Plasmodium ookinete surface protein Pvs28; InterPro: IPR010423 This family consists of several ookinete surface protein (Pvs28) from several species of Plasmodium. Pvs25 and Pvs28 are expressed on the surface of ookinetes. These proteins are potential candidates for vaccine and induce antibodies that block the infectivity of Plasmodium vivax in immunised animals [].; GO: 0009986 cell surface, 0016020 membrane; PDB: 1Z3G_B 1Z1Y_B 1Z27_A.
Probab=20.85 E-value=36 Score=31.69 Aligned_cols=32 Identities=25% Similarity=0.656 Sum_probs=25.0
Q ss_pred cCCCCceecCCc-------e--ecCCCceecCCccccCchh
Q 019341 95 PCPSNGECHQGK-------L--ECFHGYRKHGKLCVEDGDI 126 (342)
Q Consensus 95 PCP~ha~C~~g~-------l--~C~~gfvl~~p~CvpD~ek 126 (342)
||=++|.|.+.. + .|.+||++....|+|+.=.
T Consensus 51 ~Cgdya~C~~~~~~~~~~~~~C~C~~gY~~~~~vCvp~~C~ 91 (197)
T PF06247_consen 51 PCGDYAKCINQANKGEERAYKCDCINGYILKQGVCVPNKCN 91 (197)
T ss_dssp EEETTEEEEE-SSTTSSTSEEEEE-TTEEESSSSEEEGGGS
T ss_pred cccchhhhhcCCCcccceeEEEecccCceeeCCeEchhhcC
Confidence 799999998731 2 8999999999999997643
No 68
>PHA02642 C-type lectin-like protein; Provisional
Probab=20.84 E-value=1.9e+02 Score=27.42 Aligned_cols=19 Identities=11% Similarity=0.034 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 019341 48 LITVVAIASSVALTCNYLA 66 (342)
Q Consensus 48 l~~vl~ia~~~a~~c~~l~ 66 (342)
+|.||+...++++..++++
T Consensus 56 ~i~~l~~~~~~~l~~~~~~ 74 (216)
T PHA02642 56 TICILITINLVPIIILMAF 74 (216)
T ss_pred hHHHHHHHHHHHHHHHHHh
Confidence 5666666667777777666
No 69
>PF07271 Cytadhesin_P30: Cytadhesin P30/P32; InterPro: IPR009896 This family consists of several Mycoplasma species specific Cytadhesin P32 and P30 proteins. P30 has been found to be membrane associated and localised on the tip organelle. It is thought that it is important in cytadherence and virulence [].; GO: 0007157 heterophilic cell-cell adhesion, 0009405 pathogenesis, 0016021 integral to membrane
Probab=20.78 E-value=2.9e+02 Score=27.12 Aligned_cols=9 Identities=33% Similarity=0.220 Sum_probs=4.8
Q ss_pred HHHHHHHHH
Q 019341 263 IRVEELYHQ 271 (342)
Q Consensus 263 ~Rv~eLV~~ 271 (342)
.++++++.+
T Consensus 107 e~~~q~~e~ 115 (279)
T PF07271_consen 107 EEHEQLAEQ 115 (279)
T ss_pred HHHHHHHHH
Confidence 445556654
No 70
>PF07466 DUF1517: Protein of unknown function (DUF1517); InterPro: IPR010903 This family consists of several hypothetical glycine rich plant and bacterial proteins of around 300 residues in length. The function of this family is unknown.
Probab=20.71 E-value=2.6e+02 Score=27.41 Aligned_cols=17 Identities=6% Similarity=0.036 Sum_probs=7.7
Q ss_pred hhHHHHHHHHHHHHHHH
Q 019341 43 QDLLRLITVVAIASSVA 59 (342)
Q Consensus 43 ~~~~~l~~vl~ia~~~a 59 (342)
..+.-++.+|+++.++.
T Consensus 62 gg~~gl~~iLIl~~Ia~ 78 (289)
T PF07466_consen 62 GGFGGLFDILILFGIAF 78 (289)
T ss_pred cccchHHHHHHHHHHHH
Confidence 33444555444444444
No 71
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=20.43 E-value=2.5e+02 Score=26.75 Aligned_cols=18 Identities=22% Similarity=0.429 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 019341 49 ITVVAIASSVALTCNYLA 66 (342)
Q Consensus 49 ~~vl~ia~~~a~~c~~l~ 66 (342)
|.-|.|+++..+.|.+||
T Consensus 131 LIClIIIAVLfLICT~Lf 148 (227)
T PF05399_consen 131 LICLIIIAVLFLICTLLF 148 (227)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334445556667887776
No 72
>PF11694 DUF3290: Protein of unknown function (DUF3290); InterPro: IPR021707 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=20.30 E-value=4.8e+02 Score=23.15 Aligned_cols=18 Identities=22% Similarity=0.394 Sum_probs=14.4
Q ss_pred CCCCeeecccccccccCC
Q 019341 289 ECEPWVVASRLRDHLLLP 306 (342)
Q Consensus 289 ~~eP~I~~~qLRD~lL~~ 306 (342)
..+=+|-..+|.|-++..
T Consensus 96 ~~~v~VNst~l~dG~iVk 113 (149)
T PF11694_consen 96 KEEVYVNSTALTDGMIVK 113 (149)
T ss_pred hheEEEecccccCCeEEE
Confidence 446799999999988774
No 73
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=20.11 E-value=1.5e+02 Score=23.15 Aligned_cols=21 Identities=19% Similarity=0.417 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 019341 230 WVSTHALIIVPVCSLLVGCLL 250 (342)
Q Consensus 230 ~I~~~~l~I~~~~~lilg~~~ 250 (342)
|++.++..+..++++++.+++
T Consensus 62 ~~~~~k~~~i~~~iv~~~~~~ 82 (89)
T PF00957_consen 62 WWRNYKLYIIIIIIVIIIILI 82 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHhhhhhhhhH
Confidence 555666555544444444433
Done!