BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019342
(342 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9VUV9|U520_DROME Putative U5 small nuclear ribonucleoprotein 200 kDa helicase
OS=Drosophila melanogaster GN=CG5931 PE=2 SV=4
Length = 2142
Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/255 (23%), Positives = 110/255 (43%), Gaps = 60/255 (23%)
Query: 10 GHGWLRPAVGVVELSQSIIQAVPLSSRKATGGSTEGTAPFLQLPHFTEAVIKKIARKKVR 69
+GWL PAV +EL+Q + QA+ + QLPHF+ ++K+ KK+
Sbjct: 1936 SNGWLSPAVAAMELAQMVTQAM-----------WSKDSYLKQLPHFSPEIVKRCTEKKIE 1984
Query: 70 TFQELRDMSLQDRAELLSQVGGFSSTEVQDVEMVLQMMPSLTVEVTCETEGEEGIQEGDI 129
T ++ ++ +DR LL S ++ DV P+ +E+ E ++ I G
Sbjct: 1985 TVFDIMELEDEDRTRLLQ----LSDLQMADVARFCNRYPN--IELNYEVVDKDRINSGS- 2037
Query: 130 VTIQAWVTLKRGNGLIGALPHAPYYPFHKEENFWFLLADSVSNNVWFSQKVSFMDEPAAI 189
T+ V L+R + + G + AP++P +EE +W ++ D +N++ ++++ +
Sbjct: 2038 -TVNVVVQLEREDEVTGPVI-APFFPQKREEGWWVVIGDPKTNSLLSIKRLTLQQK---- 2091
Query: 190 TAASKAIEDTMEGSGATVKETSAAVREAAEKVRSGSRLVMGKIQAPAEGNYNLTCYCLCD 249
A VK AP+ G ++ T Y + D
Sbjct: 2092 ---------------AKVKLDFV---------------------APSPGKHDYTLYYMSD 2115
Query: 250 SWLGCDKRTNLKVKI 264
S+LGCD+ +++
Sbjct: 2116 SYLGCDQEYKFSIEV 2130
>sp|Q55CI8|HELCL_DICDI Activating signal cointegrator 1 complex subunit 3-like
OS=Dictyostelium discoideum GN=ascc3l PE=3 SV=1
Length = 2237
Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 63/265 (23%), Positives = 109/265 (41%), Gaps = 67/265 (25%)
Query: 10 GHGWLRPAVGVVELSQSIIQAVPLSSRKATGGSTEGTAPFLQLPHFTEAVIKKIARKKVR 69
+ WL+PA+ +ELSQ I QA+ + + F QLPH + I I + +
Sbjct: 2012 SNSWLQPAIAAMELSQMITQAM-----------WDSDSVFKQLPHMNKRRIDAITSQGIE 2060
Query: 70 TFQELRDMSLQDRAELLSQVGGFSSTEVQDVEMVLQMMPSLTVEVTCETEGEEGIQEGDI 129
+ +L MSL D + + Q+ S E D +V M ++++ + + E+ + I
Sbjct: 2061 SVFDL--MSLDDNSRI--QLLDLSQQESND--LVQSFMKYPDIDISYQVQDEDDLHADSI 2114
Query: 130 VTIQAWVTLKRG---------NGLIGALPHAPYYPFHKEENFWFLLADSVSNNVWFSQKV 180
+T++ + G N I + APYYP K +W L+ DS +N++ +++
Sbjct: 2115 MTVEMVIERDLGDDEENPIEINDSINVV-SAPYYPKEKICGWWALIGDSKNNHLLAIKRI 2173
Query: 181 SFMDEPAAITAASKAIEDTMEGSGATVKETSAAVREAAEKVRSGSRLVMGKIQAPAEGNY 240
+F+ K+T V + PA G +
Sbjct: 2174 TFL------------------------KKTK----------------VKFEFPTPAVGKH 2193
Query: 241 NLTCYCLCDSWLGCDKRTNLKVKIL 265
L+ Y DS+ GCD+ L + IL
Sbjct: 2194 QLSLYLFSDSYNGCDQEHELNINIL 2218
>sp|Q9U2G0|U520_CAEEL Putative U5 small nuclear ribonucleoprotein 200 kDa helicase
OS=Caenorhabditis elegans GN=Y46G5A.4 PE=3 SV=1
Length = 2145
Score = 69.3 bits (168), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 67/263 (25%), Positives = 112/263 (42%), Gaps = 73/263 (27%)
Query: 10 GHGWLRPAVGVVELSQSIIQAVPLSSRKATGGSTEGTAPFL-QLPHFTEAVIKKIARKKV 68
+GWL PA+ +ELSQ + QA+ P+L QLPH + A++++ K+V
Sbjct: 1931 SNGWLSPAIHAMELSQMLTQAM------------YSNEPYLKQLPHCSAALLERAKAKEV 1978
Query: 69 RTFQELRDMSLQDRAELLSQVGGFSSTEVQDVEMVLQMMPSLTVEVTCETEGEEGIQEGD 128
+ EL ++ DR+++L G E+ DV PS +EV E E D
Sbjct: 1979 TSVFELLELENDDRSDILQMEGA----ELADVARFCNHYPS--IEVATEL-------END 2025
Query: 129 IVT----IQAWVTLKRGNGLIGALPH--APYYP-FHKEENFWFLLADSVSNNVWFSQKVS 181
+VT + V+L+R N + G P AP +P KEE +W ++ DS SN + +++
Sbjct: 2026 VVTSNDNLMLAVSLERDNDIDGLAPPVVAPLFPQKRKEEGWWLVIGDSESNALLTIKRL- 2084
Query: 182 FMDEPAAITAASKAIEDTMEGSGATVKETSAAVREAAEKVRSGSRLVMGKIQAPAEGNYN 241
+ E S+ + A AP G++
Sbjct: 2085 ------------------------VINEKSSVQLDFA---------------APRPGHHK 2105
Query: 242 LTCYCLCDSWLGCDKRTNLKVKI 264
+ + DS+LG D+ ++ K+
Sbjct: 2106 FKLFFISDSYLGADQEFDVAFKV 2128
>sp|O75643|U520_HUMAN U5 small nuclear ribonucleoprotein 200 kDa helicase OS=Homo sapiens
GN=SNRNP200 PE=1 SV=2
Length = 2136
Score = 68.9 bits (167), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 62/255 (24%), Positives = 110/255 (43%), Gaps = 60/255 (23%)
Query: 10 GHGWLRPAVGVVELSQSIIQAVPLSSRKATGGSTEGTAPFLQLPHFTEAVIKKIARKKVR 69
+GWL PA+ +EL+Q + QA+ + QLPHFT IK+ K V
Sbjct: 1932 SNGWLSPALAAMELAQMVTQAM-----------WSKDSYLKQLPHFTSEHIKRCTDKGVE 1980
Query: 70 TFQELRDMSLQDRAELLSQVGGFSSTEVQDVEMVLQMMPSLTVEVTCETEGEEGIQEGDI 129
+ ++ +M ++R LL + +++ DV P+ +E++ E ++ I+ G
Sbjct: 1981 SVFDIMEMEDEERNALLQ----LTDSQIADVARFCNRYPN--IELSYEVVDKDSIRSGGP 2034
Query: 130 VTIQAWVTLKRGNGLIGALPHAPYYPFHKEENFWFLLADSVSNNVWFSQKVSFMDEPAAI 189
V + V L+R + G + AP +P +EE +W ++ D+ SN++ ++ +
Sbjct: 2035 VVV--LVQLEREEEVTGPVI-APLFPQKREEGWWVVIGDAKSNSLISIKR---------L 2082
Query: 190 TAASKAIEDTMEGSGATVKETSAAVREAAEKVRSGSRLVMGKIQAPAEGNYNLTCYCLCD 249
T KA KV+ APA G +N T Y + D
Sbjct: 2083 TLQQKA------------------------KVKLD-------FVAPATGAHNYTLYFMSD 2111
Query: 250 SWLGCDKRTNLKVKI 264
+++GCD+ V +
Sbjct: 2112 AYMGCDQEYKFSVDV 2126
>sp|P32639|BRR2_YEAST Pre-mRNA-splicing helicase BRR2 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=BRR2 PE=1 SV=2
Length = 2163
Score = 52.4 bits (124), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 55/266 (20%), Positives = 105/266 (39%), Gaps = 63/266 (23%)
Query: 1 MAVIPRTAQGHGWLRPAVGVVELSQSIIQAVPLSSRKATGGSTEGTAPFLQLPHFTEAVI 60
+ V+ +G+L A ++L+Q +IQ G + P Q+PHF ++
Sbjct: 1958 INVVVDILSANGYLN-ATTAMDLAQMLIQ-----------GVWDVDNPLRQIPHFNNKIL 2005
Query: 61 KKIARKKVRTFQELRDMSLQDRAELLSQVGGFSSTEVQDVEMVLQMMPSLTVEVTCETEG 120
+K V T ++ + ++R E+L+ + +++ V + P+ VE+T
Sbjct: 2006 EKCKEINVETVYDIMALEDEERDEILT----LTDSQLAQVAAFVNNYPN--VELTYSLNN 2059
Query: 121 EEGIQEG--DIVTIQAWVTLKRGNGLIGALPHAPYYPFHKEENFWFLLADSVSNNVWFSQ 178
+ + G +TIQ ++ N + + YPF K E++W +L + ++ +
Sbjct: 2060 SDSLISGVKQKITIQLTRDVEPENLQVT----SEKYPFDKLESWWLVLGEVSKKELYAIK 2115
Query: 179 KVSFMDEPAAITAASKAIEDTMEGSGATVKETSAAVREAAEKVRSGSRLVMGKIQAPAEG 238
KV+ KET E P G
Sbjct: 2116 KVTLN------------------------KETQQYELE---------------FDTPTSG 2136
Query: 239 NYNLTCYCLCDSWLGCDKRTNLKVKI 264
+NLT +C+CDS+L DK + ++ +
Sbjct: 2137 KHNLTIWCVCDSYLDADKELSFEINV 2162
>sp|Q8VHE0|SEC63_MOUSE Translocation protein SEC63 homolog OS=Mus musculus GN=Sec63 PE=1
SV=4
Length = 760
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 51/104 (49%), Gaps = 9/104 (8%)
Query: 35 SRKATGGSTEGTAPFLQLPHFTEAVIKKIA---RKKVRTFQELRDMSLQDRAELLSQVGG 91
S+ A G + +P LQLPH E +++++ + K++T Q+L + DR LL
Sbjct: 370 SQMAVQGLQQFKSPLLQLPHIEEDNLRRVSNHKKYKIKTIQDLVSLKESDRHSLLH---F 426
Query: 92 FSSTEVQDVEMVLQMMPSLTVEVTCET---EGEEGIQEGDIVTI 132
+ ++V VL P +T+++ + E I G +VT+
Sbjct: 427 LEDEKYEEVMAVLGSFPYVTMDIKSQVLDDEDSNNITVGSLVTV 470
>sp|Q5R660|SEC63_PONAB Translocation protein SEC63 homolog OS=Pongo abelii GN=SEC63 PE=2
SV=1
Length = 761
Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 51/104 (49%), Gaps = 9/104 (8%)
Query: 35 SRKATGGSTEGTAPFLQLPHFTEAVIKKIA---RKKVRTFQELRDMSLQDRAELLSQVGG 91
S+ A G + +P LQLPH E +++++ + K++T Q+L + DR LL
Sbjct: 370 SQMAVQGLQQFKSPLLQLPHIEEDNLRRVSNHKKYKIKTIQDLVSLKESDRHTLLH---F 426
Query: 92 FSSTEVQDVEMVLQMMPSLTVEVTCET---EGEEGIQEGDIVTI 132
+ ++V VL P +T+++ + E I G +VT+
Sbjct: 427 LEDEKYEEVMAVLGSFPYVTMDIKSQVLDDEDSNNITVGSLVTV 470
>sp|Q9UGP8|SEC63_HUMAN Translocation protein SEC63 homolog OS=Homo sapiens GN=SEC63 PE=1
SV=2
Length = 760
Score = 42.4 bits (98), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 51/104 (49%), Gaps = 9/104 (8%)
Query: 35 SRKATGGSTEGTAPFLQLPHFTEAVIKKIA---RKKVRTFQELRDMSLQDRAELLSQVGG 91
S+ A G + +P LQLPH E +++++ + K++T Q+L + DR LL
Sbjct: 370 SQMAVQGLQQFKSPLLQLPHIEEDNLRRVSNHKKYKIKTIQDLVSLKESDRHTLLH---F 426
Query: 92 FSSTEVQDVEMVLQMMPSLTVEVTCET---EGEEGIQEGDIVTI 132
+ ++V VL P +T+++ + E I G +VT+
Sbjct: 427 LEDEKYEEVMAVLGSFPYVTMDIKSQVLDDEDSNNITVGSLVTV 470
>sp|Q9UT24|BRR2_SCHPO Pre-mRNA-splicing factor brr2 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=brr2 PE=1 SV=1
Length = 2176
Score = 41.6 bits (96), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 74/178 (41%), Gaps = 48/178 (26%)
Query: 7 TAQGHGWLRPAVGVVELSQSIIQAVPLSSRKATGGSTEGTAPFLQLPHFTEAVIKKIARK 66
T G L + +E+SQ + QA+ + +P Q+P+F +A+I++ ++
Sbjct: 1965 TLSSEGHLIACIRPMEMSQMVTQAL-----------WDRDSPLKQIPYFDDALIERCNKE 2013
Query: 67 KVRTFQELRDMSLQDRAELLSQVGGFSST---------------EVQDVEMVLQMMPS-L 110
V ++ D+ + R ELL + E++D E V PS L
Sbjct: 2014 GVHDVFDIIDLDDEKRTELLHMDNAHLAKCAEFINKYPDIDIDFEIEDSEDVHANSPSVL 2073
Query: 111 TVEVTCETEGEEGIQEGDIVTIQAWVTLKRGNGLIGALPHAPYYPFHKEENFWFLLAD 168
V++T E E +E E D I APY+P K E++W +++D
Sbjct: 2074 IVQLTRELEEDE---EVDTTVI------------------APYFPAQKTEHWWLVISD 2110
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.128 0.363
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 127,969,305
Number of Sequences: 539616
Number of extensions: 5551456
Number of successful extensions: 75216
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 918
Number of HSP's successfully gapped in prelim test: 438
Number of HSP's that attempted gapping in prelim test: 47636
Number of HSP's gapped (non-prelim): 14975
length of query: 342
length of database: 191,569,459
effective HSP length: 118
effective length of query: 224
effective length of database: 127,894,771
effective search space: 28648428704
effective search space used: 28648428704
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 61 (28.1 bits)