Query 019342
Match_columns 342
No_of_seqs 184 out of 739
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 14:37:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019342.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019342hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3im1_A Protein SNU246, PRE-mRN 100.0 2.4E-45 8.3E-50 355.2 24.4 202 5-265 127-328 (328)
2 2q0z_X Protein Pro2281; SEC63, 100.0 4.9E-44 1.7E-48 347.6 26.9 205 5-269 130-334 (339)
3 4f92_B U5 small nuclear ribonu 100.0 7.6E-34 2.6E-38 322.9 24.0 199 5-263 1526-1724(1724)
4 4f92_B U5 small nuclear ribonu 99.9 2.4E-21 8.2E-26 220.7 23.0 219 5-292 695-915 (1724)
5 2p6r_A Afuhel308 helicase; pro 98.6 7.3E-09 2.5E-13 108.3 2.1 89 4-115 604-692 (702)
6 2zj8_A DNA helicase, putative 98.6 3.6E-08 1.2E-12 103.3 7.0 91 4-109 614-704 (720)
7 2va8_A SSO2462, SKI2-type heli 98.3 5.4E-07 1.9E-11 94.1 6.6 89 4-110 625-714 (715)
8 1wcn_A Transcription elongatio 95.4 0.018 6.3E-07 43.2 4.8 58 46-107 6-63 (70)
9 2kz3_A Putative uncharacterize 93.1 0.24 8.4E-06 38.3 6.6 50 52-105 9-58 (83)
10 2i1q_A DNA repair and recombin 87.2 0.76 2.6E-05 42.7 5.7 56 47-106 3-58 (322)
11 1z00_B DNA repair endonuclease 83.6 1.5 5E-05 33.8 4.8 53 46-105 17-70 (84)
12 2a1j_A DNA repair endonuclease 82.3 2.2 7.4E-05 30.8 5.0 54 46-106 3-57 (63)
13 1pzn_A RAD51, DNA repair and r 80.8 3.4 0.00012 39.3 7.3 57 46-106 34-90 (349)
14 1z3e_B DNA-directed RNA polyme 79.1 4.2 0.00014 30.5 5.7 56 47-107 9-64 (73)
15 2lpe_A Kinase suppressor of RA 78.7 4 0.00014 34.8 6.1 59 46-107 77-144 (149)
16 1u9l_A Transcription elongatio 78.2 1.3 4.5E-05 33.0 2.7 56 48-107 7-62 (70)
17 3k4g_A DNA-directed RNA polyme 75.5 5.3 0.00018 31.0 5.5 56 47-107 12-67 (86)
18 2ca6_A RAN GTPase-activating p 73.3 0.82 2.8E-05 43.0 0.5 15 97-111 176-190 (386)
19 2z43_A DNA repair and recombin 73.1 0.71 2.4E-05 43.3 0.0 58 45-106 10-67 (324)
20 3gfk_B DNA-directed RNA polyme 69.9 4.5 0.00015 30.9 3.9 56 47-107 16-71 (79)
21 1ci4_A Protein (barrier-TO-aut 67.9 17 0.00058 28.3 6.8 62 45-106 16-83 (89)
22 1b22_A DNA repair protein RAD5 65.0 3 0.0001 33.9 2.1 58 47-108 23-82 (114)
23 3mab_A Uncharacterized protein 61.6 33 0.0011 26.7 7.5 38 46-83 3-40 (93)
24 1coo_A RNA polymerase alpha su 58.3 7.7 0.00026 30.8 3.3 55 48-107 25-79 (98)
25 3bq0_A POL IV, DBH, DNA polyme 57.9 14 0.00048 34.9 5.8 59 47-111 179-237 (354)
26 1jx4_A DNA polymerase IV (fami 56.9 15 0.00052 34.7 5.8 59 47-111 178-236 (352)
27 4dez_A POL IV 1, DNA polymeras 55.2 30 0.001 32.6 7.6 57 47-109 178-234 (356)
28 1z00_A DNA excision repair pro 54.9 22 0.00075 26.7 5.4 55 47-106 19-73 (89)
29 1kft_A UVRC, excinuclease ABC 54.7 9.6 0.00033 28.0 3.2 56 45-105 22-77 (78)
30 3lda_A DNA repair protein RAD5 52.3 14 0.00049 35.9 4.9 56 47-106 81-138 (400)
31 2a1j_B DNA excision repair pro 50.5 24 0.00082 26.7 5.0 54 47-105 32-85 (91)
32 1x2i_A HEF helicase/nuclease; 49.5 23 0.00078 25.2 4.6 55 47-106 14-68 (75)
33 3osn_A DNA polymerase IOTA; ho 47.1 36 0.0012 33.2 6.9 55 48-108 235-289 (420)
34 3gqc_A DNA repair protein REV1 46.4 23 0.00079 35.6 5.5 55 47-107 315-369 (504)
35 4f4y_A POL IV, DNA polymerase 46.3 18 0.00062 34.5 4.5 58 47-110 179-236 (362)
36 1im4_A DBH; DNA polymerase PAL 45.3 9.3 0.00032 34.1 2.1 36 47-82 184-219 (221)
37 3bqs_A Uncharacterized protein 43.3 27 0.00093 27.2 4.3 42 46-87 3-44 (93)
38 1v5w_A DMC1, meiotic recombina 41.3 5.6 0.00019 37.5 0.0 54 48-105 26-81 (343)
39 2dkz_A Hypothetical protein LO 38.9 70 0.0024 24.6 5.8 52 51-107 28-79 (84)
40 2bgw_A XPF endonuclease; hydro 36.6 35 0.0012 29.8 4.5 54 48-106 163-216 (219)
41 2yrl_A KIAA1837 protein; PKD d 32.2 1.1E+02 0.0037 23.5 6.3 37 230-268 61-97 (102)
42 3isy_A Bsupi, intracellular pr 30.1 2.2E+02 0.0075 23.0 7.9 43 126-176 16-58 (120)
43 2ayu_A Nucleosome assembly pro 29.3 11 0.00037 37.3 -0.2 6 151-156 240-245 (417)
44 2wnv_B C1Q chain B, complement 29.0 41 0.0014 27.4 3.4 21 230-250 41-61 (136)
45 1vq8_Y 50S ribosomal protein L 28.9 12 0.0004 34.2 0.0 57 45-105 13-69 (241)
46 2aq4_A DNA repair protein REV1 28.6 47 0.0016 32.3 4.3 42 46-87 240-284 (434)
47 2hr0_A Complement C3 beta chai 27.1 4.6E+02 0.016 26.3 11.6 44 124-182 117-160 (645)
48 1skn_P DNA-binding domain of S 26.8 93 0.0032 24.2 4.8 34 69-103 31-64 (92)
49 2wnv_A C1Q chain A, complement 26.0 50 0.0017 26.7 3.4 20 230-249 38-57 (134)
50 1t94_A Polymerase (DNA directe 23.7 1.5E+02 0.0051 29.0 6.9 58 47-111 282-339 (459)
51 2r5o_A Putative ATP binding co 23.7 95 0.0033 26.3 4.9 41 227-267 125-171 (188)
52 4ecq_A DNA polymerase ETA; tra 23.7 75 0.0026 31.0 4.7 56 47-108 253-309 (435)
53 3arc_U Photosystem II 12 kDa e 22.1 74 0.0025 24.8 3.5 49 45-105 24-73 (97)
54 2wnv_C C1Q chain C, complement 21.9 47 0.0016 26.8 2.4 21 230-250 42-62 (131)
55 2zd7_A VPS75, vacuolar protein 21.6 19 0.00065 33.2 -0.1 6 151-156 113-118 (264)
56 3c1y_A DNA integrity scanning 20.9 51 0.0018 32.1 2.8 55 48-107 316-370 (377)
57 4acq_A Alpha-2-macroglobulin; 20.5 3.6E+02 0.012 30.5 10.0 18 163-180 141-158 (1451)
58 2kz5_A Transcription factor NF 20.4 1.5E+02 0.005 23.1 4.8 34 69-103 35-68 (91)
No 1
>3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA helicase, rnpase, RNA unwindase, molecular model mRNA splicing; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A* 3hib_A
Probab=100.00 E-value=2.4e-45 Score=355.19 Aligned_cols=202 Identities=23% Similarity=0.462 Sum_probs=186.2
Q ss_pred cchhhccCCHHHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCCCccCCCCCCHHHHHHHhhcCCCCHHHHHcCCHHHHHH
Q 019342 5 PRTAQGHGWLRPAVGVVELSQSIIQAVPLSSRKATGGSTEGTAPFLQLPHFTEAVIKKIARKKVRTFQELRDMSLQDRAE 84 (342)
Q Consensus 5 ~~~a~~~GwL~~al~~m~L~Q~IvQA~W~~~~~~~~~~~~~~spLlQLPh~~~~~v~~l~~~~v~tl~~L~~m~~~er~~ 84 (342)
-.+|+.+||++ ++++|+|+|||+||+|+ +++||+|||||+.+.++++.++++.++.+|.+|++++++.
T Consensus 127 ~di~~~~g~~~-~~~~l~L~q~i~q~~w~-----------~~~pL~Qlp~i~~~~~~~l~~~~i~s~~~l~~~~~~e~~~ 194 (328)
T 3im1_A 127 VDILSANGYLN-ATTAMDLAQMLIQGVWD-----------VDNPLRQIPHFNNKILEKCKEINVETVYDIMALEDEERDE 194 (328)
T ss_dssp HHHHHHTTBTT-HHHHHHHHHHHHHTSCT-----------TSCGGGGSTTCCHHHHHHHHHTTCCSHHHHHHSCHHHHHH
T ss_pred HHHHHcCCcHH-HHHHHHHHHHHHhhcCC-----------CCCceeCCCCCCHHHHHHHHhCCCCCHHHHhcCCHHHHHh
Confidence 45788999999 99999999999999998 7899999999999999999988999999999999999999
Q ss_pred HHhhccCCChHHHHHHHHHHhcCCceeEEEEEEecCCccccCCCeEEEEEeeeeeccCCCCCCCccCCCCCCCCcccEEE
Q 019342 85 LLSQVGGFSSTEVQDVEMVLQMMPSLTVEVTCETEGEEGIQEGDIVTIQAWVTLKRGNGLIGALPHAPYYPFHKEENFWF 164 (342)
Q Consensus 85 lL~~~~~l~~~~~~~v~~v~~~iP~I~i~a~~~v~gee~It~g~~vtl~~~V~L~R~n~~~~~~~~aP~FP~~K~E~Wwv 164 (342)
+|+ +++.+++++.++|++||.|+|+ ++|.|++.|++|+.++|+ |+|+|.+......+||||||+.|.|+|||
T Consensus 195 ll~----~~~~~~~~v~~~~~~~P~l~v~--~~v~~~~~i~~~~~~~l~--v~l~~~~~~~~~~~~ap~fp~~k~e~ww~ 266 (328)
T 3im1_A 195 ILT----LTDSQLAQVAAFVNNYPNVELT--YSLNNSDSLISGVKQKIT--IQLTRDVEPENLQVTSEKYPFDKLESWWL 266 (328)
T ss_dssp HCC----CCHHHHHHHHHHHHHCCCEEEE--EEETTGGGCCTTSEEEEE--EEEEESSCCSCCBCCCSSCCBCCBCCEEE
T ss_pred HhC----CCHHHHHHHHHHHHhCCCEEEE--EEecCCCcccCCCeEEEE--EEEEECCCCCCCcEECCCCCCCccCCEEE
Confidence 875 8899999999999999999976 678898899999999999 99999876666789999999999999999
Q ss_pred EEEECCCCeEEEEeeeecccchhHHhhhhhhhhhhhcCCCCccchhhHHHHHHHhhhhcCceeEEEEEEcCCCCceeEEE
Q 019342 165 LLADSVSNNVWFSQKVSFMDEPAAITAASKAIEDTMEGSGATVKETSAAVREAAEKVRSGSRLVMGKIQAPAEGNYNLTC 244 (342)
Q Consensus 165 llgD~~~n~Ll~~krv~~~~~~~~~~~~~k~i~~~~~~~g~~~~~~~~~~~~~~~~~k~~s~~v~l~F~aP~~G~~~l~l 244 (342)
+|||+++|+|+++||+++.++ .+.++++|++|++|+|+|+|
T Consensus 267 ~v~d~~~~~l~~~kr~~~~~~---------------------------------------~~~~~~~f~~p~~g~~~~~v 307 (328)
T 3im1_A 267 VLGEVSKKELYAIKKVTLNKE---------------------------------------TQQYELEFDTPTSGKHNLTI 307 (328)
T ss_dssp EEEEGGGTEEEEEEEECCCSS---------------------------------------EEEEEEEEECCCSEEEEEEE
T ss_pred EEEECCCCeEEEEeeeccccc---------------------------------------ceEEEEEEEcCCCCcEEEEE
Confidence 999999999999999998641 13577999999889999999
Q ss_pred EEEcCCCcccceEEEEEEEee
Q 019342 245 YCLCDSWLGCDKRTNLKVKIL 265 (342)
Q Consensus 245 ~viSDsYlG~D~~~~i~l~V~ 265 (342)
+||||+|+|||++++|+|+|.
T Consensus 308 ~~vsD~ylG~d~~~~~~l~V~ 328 (328)
T 3im1_A 308 WCVCDSYLDADKELSFEINVK 328 (328)
T ss_dssp EEEESSCSSCCEEEEEEEEEC
T ss_pred EEEecCCcceeEEEEEEEEeC
Confidence 999999999999999999984
No 2
>2q0z_X Protein Pro2281; SEC63, SEC, NESG, HR1979, structural genomics, translocase, northeast structural genomics consortium, PSI-2; 2.00A {Homo sapiens} SCOP: a.289.1.1 b.1.18.22
Probab=100.00 E-value=4.9e-44 Score=347.62 Aligned_cols=205 Identities=27% Similarity=0.503 Sum_probs=186.0
Q ss_pred cchhhccCCHHHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCCCccCCCCCCHHHHHHHhhcCCCCHHHHHcCCHHHHHH
Q 019342 5 PRTAQGHGWLRPAVGVVELSQSIIQAVPLSSRKATGGSTEGTAPFLQLPHFTEAVIKKIARKKVRTFQELRDMSLQDRAE 84 (342)
Q Consensus 5 ~~~a~~~GwL~~al~~m~L~Q~IvQA~W~~~~~~~~~~~~~~spLlQLPh~~~~~v~~l~~~~v~tl~~L~~m~~~er~~ 84 (342)
-.+++.+||+.+++++|+|+|||+||+|+ +++||+|||||+.+.++++.++++.++.+|.+|++++++.
T Consensus 130 ~di~~~~g~~~~~~~~l~L~q~i~q~~w~-----------~~~pL~Qlp~i~~~~~~~l~~~~i~s~~~l~~~~~~e~~~ 198 (339)
T 2q0z_X 130 VDVLSSNGWLSPALAAMELAQMVTQAMWS-----------KDSYLKQLPHFTSEHIKRCTDKGVESVFDIMEMEDEERNA 198 (339)
T ss_dssp HHHHHHTTBHHHHHHHHHHHHHHHHTCCT-----------TSCGGGGSTTCCHHHHHHHHHTTCCSHHHHHHSCHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcCC-----------CCCceecCCCCCHHHHHHHHhcCCCCHHHHHhCCHHHHHH
Confidence 35788999999999999999999999998 7899999999999999999988999999999999999999
Q ss_pred HHhhccCCChHHHHHHHHHHhcCCceeEEEEEEecCCccccCCCeEEEEEeeeeeccCCCCCCCccCCCCCCCCcccEEE
Q 019342 85 LLSQVGGFSSTEVQDVEMVLQMMPSLTVEVTCETEGEEGIQEGDIVTIQAWVTLKRGNGLIGALPHAPYYPFHKEENFWF 164 (342)
Q Consensus 85 lL~~~~~l~~~~~~~v~~v~~~iP~I~i~a~~~v~gee~It~g~~vtl~~~V~L~R~n~~~~~~~~aP~FP~~K~E~Wwv 164 (342)
+|+ +++.+++++.++|++||.|+|+ ++|.+++.|++|+.++|+ |+++|.+. ....+|||+||+.|.|+|||
T Consensus 199 ll~----l~~~~~~~i~~~~~~~P~l~v~--~~v~~~~~i~~~~~~~l~--v~l~~~~~-~~~~v~aP~fp~~k~e~wwi 269 (339)
T 2q0z_X 199 LLQ----LTDSQIADVARFCNRYPNIELS--YEVVDKDSIRSGGPVVVL--VQLEREEE-VTGPVIAPLFPQKREEGWWV 269 (339)
T ss_dssp HHC----CCHHHHHHHHHHHTTSCCEEEE--EEETTGGGCBTTSEEEEE--EEEEECSS-CCSSCCCTTCSSCCCCCEEE
T ss_pred HHC----CCHHHHHHHHHHHHhCCcEEEE--EEEccCccccCCCcEEEE--EEEEECCC-CCCceeCCCCCCCCCCcEEE
Confidence 986 8889999999999999999875 668888889999999999 99998753 34589999999999999999
Q ss_pred EEEECCCCeEEEEeeeecccchhHHhhhhhhhhhhhcCCCCccchhhHHHHHHHhhhhcCceeEEEEEEcCCCCceeEEE
Q 019342 165 LLADSVSNNVWFSQKVSFMDEPAAITAASKAIEDTMEGSGATVKETSAAVREAAEKVRSGSRLVMGKIQAPAEGNYNLTC 244 (342)
Q Consensus 165 llgD~~~n~Ll~~krv~~~~~~~~~~~~~k~i~~~~~~~g~~~~~~~~~~~~~~~~~k~~s~~v~l~F~aP~~G~~~l~l 244 (342)
+|+|+++|+|++++|+++.+. ..++++|++|.+|.|+|+|
T Consensus 270 ~v~d~~~~~ll~~~r~~l~~~----------------------------------------~~~~l~f~~P~~g~~~~~v 309 (339)
T 2q0z_X 270 VIGDAKSNSLISIKRLTLQQK----------------------------------------AKVKLDFVAPATGAHNYTL 309 (339)
T ss_dssp EEEETTTTEEEEEEEECCSSE----------------------------------------EEEEEEEECCSSEEEEEEE
T ss_pred EEEECCCCEEEEEEEEecccc----------------------------------------eEEEEEEECCCCCCeeEEE
Confidence 999999999999999987641 2467999999999999999
Q ss_pred EEEcCCCcccceEEEEEEEeeecCc
Q 019342 245 YCLCDSWLGCDKRTNLKVKILKRTR 269 (342)
Q Consensus 245 ~viSDsYlG~D~~~~i~l~V~~~~~ 269 (342)
+|+||+|+|||++++|+|+|.++..
T Consensus 310 ~~vSD~ylG~D~~~~i~~~v~~~~~ 334 (339)
T 2q0z_X 310 YFMSDAYMGCDQEYKFSVDVKEAET 334 (339)
T ss_dssp EEEESSCSSCCEEEEEEEEEBCC--
T ss_pred EEEcccccCcceEEEEEEEEecCcc
Confidence 9999999999999999999986543
No 3
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=7.6e-34 Score=322.93 Aligned_cols=199 Identities=28% Similarity=0.514 Sum_probs=180.6
Q ss_pred cchhhccCCHHHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCCCccCCCCCCHHHHHHHhhcCCCCHHHHHcCCHHHHHH
Q 019342 5 PRTAQGHGWLRPAVGVVELSQSIIQAVPLSSRKATGGSTEGTAPFLQLPHFTEAVIKKIARKKVRTFQELRDMSLQDRAE 84 (342)
Q Consensus 5 ~~~a~~~GwL~~al~~m~L~Q~IvQA~W~~~~~~~~~~~~~~spLlQLPh~~~~~v~~l~~~~v~tl~~L~~m~~~er~~ 84 (342)
...+...||+.+++.+|+|+|||.||+|. +++||+|||||+...+++|...+++|+.+|.+++++++..
T Consensus 1526 ~d~~~~~g~~~~~~~~~~l~q~l~~~~w~-----------~~~~L~qip~i~~~~ar~l~~~gi~t~~dl~~~~~~~~~~ 1594 (1724)
T 4f92_B 1526 VDVLSSNGWLSPALAAMELAQMVTQAMWS-----------KDSYLKQLPHFTSEHIKRCTDKGVESVFDIMEMEDEERNA 1594 (1724)
T ss_dssp HHHHHHTTBHHHHHHHHHHHHHHHTTCCT-----------TSCGGGGSTTCCHHHHHHHHHHTCCSHHHHHSSCHHHHTT
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHhCCCc-----------CCcCEecCCCCCHHHHHHHHHCCCCCHHHHHhCCHHHHHH
Confidence 45788999999999999999999999998 7899999999999999999999999999999999999998
Q ss_pred HHhhccCCChHHHHHHHHHHhcCCceeEEEEEEecCCccccCCCeEEEEEeeeeeccCCCCCCCccCCCCCCCCcccEEE
Q 019342 85 LLSQVGGFSSTEVQDVEMVLQMMPSLTVEVTCETEGEEGIQEGDIVTIQAWVTLKRGNGLIGALPHAPYYPFHKEENFWF 164 (342)
Q Consensus 85 lL~~~~~l~~~~~~~v~~v~~~iP~I~i~a~~~v~gee~It~g~~vtl~~~V~L~R~n~~~~~~~~aP~FP~~K~E~Wwv 164 (342)
+|+ +++.++.++.++|++||+|+|+ +.+.+.+.+..|..+++. |+++|.+.. ...+|||+||+.|.|+|||
T Consensus 1595 ll~----~~~~~~~~i~~~~~~~P~i~~~--~~~~~~~~~~~~~~~~~~--v~~~~~~~~-~~~~~~~~~p~~k~e~w~~ 1665 (1724)
T 4f92_B 1595 LLQ----LTDSQIADVARFCNRYPNIELS--YEVVDKDSIRSGGPVVVL--VQLEREEEV-TGPVIAPLFPQKREEGWWV 1665 (1724)
T ss_dssp SSC----CCHHHHHHHHHHHHHSCCEEEE--EEEETSSSCCTTSEEEEE--EEEEESSCC-CSCCCCTTSCSCCCCCEEE
T ss_pred HHC----CChHHHHHHHHHHHhCCceEEE--EEEecCccccCCCeEEEE--EEEEecCCC-CCeeecCCCCCCCccCEEE
Confidence 876 8999999999999999999976 556677778899999999 999997643 3478999999999999999
Q ss_pred EEEECCCCeEEEEeeeecccchhHHhhhhhhhhhhhcCCCCccchhhHHHHHHHhhhhcCceeEEEEEEcCCCCceeEEE
Q 019342 165 LLADSVSNNVWFSQKVSFMDEPAAITAASKAIEDTMEGSGATVKETSAAVREAAEKVRSGSRLVMGKIQAPAEGNYNLTC 244 (342)
Q Consensus 165 llgD~~~n~Ll~~krv~~~~~~~~~~~~~k~i~~~~~~~g~~~~~~~~~~~~~~~~~k~~s~~v~l~F~aP~~G~~~l~l 244 (342)
+|||.++|+|+++||+++.+. ..+++.|.+|++|.++|+|
T Consensus 1666 vvg~~~~~~l~~~kr~~~~~~----------------------------------------~~~~l~f~~p~~g~~~~~~ 1705 (1724)
T 4f92_B 1666 VIGDAKSNSLISIKRLTLQQK----------------------------------------AKVKLDFVAPATGAHNYTL 1705 (1724)
T ss_dssp EEEETTTTEEEEEEEECCSSE----------------------------------------EEEEEEEECCSSSCEEEEE
T ss_pred EEEECCCCeEEEEEEEecCCC----------------------------------------ceEEEEEEeCCCCceeEEE
Confidence 999999999999999988651 2467999999999999999
Q ss_pred EEEcCCCcccceEEEEEEE
Q 019342 245 YCLCDSWLGCDKRTNLKVK 263 (342)
Q Consensus 245 ~viSDsYlG~D~~~~i~l~ 263 (342)
|||||||+||||++.+.++
T Consensus 1706 ~~~~d~y~g~d~~~~~~~~ 1724 (1724)
T 4f92_B 1706 YFMSDAYMGCDQEYKFSVD 1724 (1724)
T ss_dssp EEEESSCSSCCEEEEEEEC
T ss_pred EEEecCccccceeEEEecC
Confidence 9999999999999998863
No 4
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.87 E-value=2.4e-21 Score=220.72 Aligned_cols=219 Identities=16% Similarity=0.257 Sum_probs=185.1
Q ss_pred cchhhccCCHHHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCCCccCCCCCCHHHHHHHhhcCCCCHHHHHcCCHHHHHH
Q 019342 5 PRTAQGHGWLRPAVGVVELSQSIIQAVPLSSRKATGGSTEGTAPFLQLPHFTEAVIKKIARKKVRTFQELRDMSLQDRAE 84 (342)
Q Consensus 5 ~~~a~~~GwL~~al~~m~L~Q~IvQA~W~~~~~~~~~~~~~~spLlQLPh~~~~~v~~l~~~~v~tl~~L~~m~~~er~~ 84 (342)
.+++..+||...+..++.||+||.+++|. ..+||+|||++....++++.++++ ++.+|.+|++.++..
T Consensus 695 ~ei~~~~~~~~~~~~~l~l~k~i~~~~w~-----------~~~~L~q~~~i~~~~~~~l~~~~~-~~~~l~~~~~~~l~~ 762 (1724)
T 4f92_B 695 FEIVLNRGWAQLTDKTLNLCKMIDKRMWQ-----------SMCPLRQFRKLPEEVVKKIEKKNF-PFERLYDLNHNEIGE 762 (1724)
T ss_dssp HHHHHHTTBHHHHHHHHHHHHHHHHTSCT-----------TSCGGGGSTTSCHHHHHHHHTSSC-CGGGGGGCCHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhCCCC-----------CCCceecCCCCCHHHHHHHHhcCC-CHHHHHhCCHHHHHH
Confidence 45788999999999999999999999998 689999999999999999998876 899999999999999
Q ss_pred HHhhccCCChHHHHHHHHHHhcCCceeEEEEEEecCCccccCCCeEEEEEeeeeeccCCCCCCCccCCCCCCCCcccEEE
Q 019342 85 LLSQVGGFSSTEVQDVEMVLQMMPSLTVEVTCETEGEEGIQEGDIVTIQAWVTLKRGNGLIGALPHAPYYPFHKEENFWF 164 (342)
Q Consensus 85 lL~~~~~l~~~~~~~v~~v~~~iP~I~i~a~~~v~gee~It~g~~vtl~~~V~L~R~n~~~~~~~~aP~FP~~K~E~Wwv 164 (342)
++++ +.....+.+.+++||.+++++.+++ ||. +.+.+. +++++ .+.|.++++. +.|+||+
T Consensus 763 ~~~~-----~~~g~~i~~~~~~~P~~~~~~~~~p-----~~~-~~~~~~--~~~~~------~~~w~~~~h~-~~~~~~~ 822 (1724)
T 4f92_B 763 LIRM-----PKMGKTIHKYVHLFPKLELSVHLQP-----ITR-STLKVE--LTITP------DFQWDEKVHG-SSEAFWI 822 (1724)
T ss_dssp HHTC-----STTHHHHHHHHTTSCCEEEEEEEEE-----SSS-SEEEEE--EEEEE------CSCCCTTTTT-TEEEEEE
T ss_pred HHCC-----chHHHHHHHHHHHCCCceEEEEEEe-----cCC-ceEEEE--EEEee------ccccchhhcC-CceeEEE
Confidence 9873 4668999999999999999888764 554 467777 66664 2556666654 6899999
Q ss_pred EEEECCCCeEEEEeeeecccchhHHhhhhhhhhhhhcCCCCccchhhHHHHHHHhhhhcCceeEEEEEEcC--CCCceeE
Q 019342 165 LLADSVSNNVWFSQKVSFMDEPAAITAASKAIEDTMEGSGATVKETSAAVREAAEKVRSGSRLVMGKIQAP--AEGNYNL 242 (342)
Q Consensus 165 llgD~~~n~Ll~~krv~~~~~~~~~~~~~k~i~~~~~~~g~~~~~~~~~~~~~~~~~k~~s~~v~l~F~aP--~~G~~~l 242 (342)
||+|..++.|++++++.+.++. + .....+.|++| +|.+.+|
T Consensus 823 ~v~d~~~~~i~~~~~~~~~~~~---------~----------------------------~~~~~~~~~~p~~~~~p~~~ 865 (1724)
T 4f92_B 823 LVEDVDSEVILHHEYFLLKAKY---------A----------------------------QDEHLITFFVPVFEPLPPQY 865 (1724)
T ss_dssp EEECTTSCBEEEEEEEEEEGGG---------T----------------------------TSCEEEEEEEECCSSCCSEE
T ss_pred EEEecCCCeEEEEEEEEeeeec---------c----------------------------CCceEEEEEEECCCCCCCeE
Confidence 9999999999999999987621 0 01345788888 5888999
Q ss_pred EEEEEcCCCcccceEEEEEEEeeecCcCCCCCccccCCCCCccCCCCCcc
Q 019342 243 TCYCLCDSWLGCDKRTNLKVKILKRTRAGTRGGIVSEEGPIVEDGAEEEE 292 (342)
Q Consensus 243 ~l~viSDsYlG~D~~~~i~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (342)
+|+++||.|+||+.+++|.|+.+-.|...+..+++.+..|.--+...+++
T Consensus 866 ~i~~~sd~w~~~~~~~~~~~~~~~~p~~~~~~t~lldl~plp~s~L~~~~ 915 (1724)
T 4f92_B 866 FIRVVSDRWLSCETQLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNSA 915 (1724)
T ss_dssp EEEEEESSSTTCEEEEEEECTTCCCCCCCCCCCCCCCCCCCBGGGSCCHH
T ss_pred EEEEEEccccCCCceeeeccccccCCCCCCCCCccccCCCCCcccccCHH
Confidence 99999999999999999999999998888889999999988766665443
No 5
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=98.63 E-value=7.3e-09 Score=108.26 Aligned_cols=89 Identities=18% Similarity=0.222 Sum_probs=75.0
Q ss_pred ccchhhccCCHHHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCCCccCCCCCCHHHHHHHhhcCCCCHHHHHcCCHHHHH
Q 019342 4 IPRTAQGHGWLRPAVGVVELSQSIIQAVPLSSRKATGGSTEGTAPFLQLPHFTEAVIKKIARKKVRTFQELRDMSLQDRA 83 (342)
Q Consensus 4 ~~~~a~~~GwL~~al~~m~L~Q~IvQA~W~~~~~~~~~~~~~~spLlQLPh~~~~~v~~l~~~~v~tl~~L~~m~~~er~ 83 (342)
+.++|...||. .+++|+|||.||+|. ..+||+|||||+...+++|.+.+++|+.+|.+++ .++.
T Consensus 604 ~~~i~~~~g~~----~l~~l~~ri~~gv~~-----------~~~~L~qlp~v~~~~ar~l~~~g~~s~~~l~~~~-~~l~ 667 (702)
T 2p6r_A 604 MNRIAEEVGNT----SVSGLTERIKHGVKE-----------ELLELVRIRHIGRVRARKLYNAGIRNAEDIVRHR-EKVA 667 (702)
T ss_dssp HHHHHHHTTCC----SSTTHHHHHHHTCCG-----------GGHHHHTSTTCCHHHHHHHHTTTCCSHHHHHHTH-HHHH
T ss_pred HHHHHHHcCHH----HHHHHHHHHHcCCCc-----------chHhhhcCCCCCHHHHHHHHHcCCCCHHHHHhhh-HHHH
Confidence 34678889998 788999999999998 7899999999999999999999999999999999 8888
Q ss_pred HHHhhccCCChHHHHHHHHHHhcCCceeEEEE
Q 019342 84 ELLSQVGGFSSTEVQDVEMVLQMMPSLTVEVT 115 (342)
Q Consensus 84 ~lL~~~~~l~~~~~~~v~~v~~~iP~I~i~a~ 115 (342)
.+|+ +...+.+.+.+. +|.+++++.
T Consensus 668 ~ll~------~~~~~~i~~~~~-~p~~~~~~~ 692 (702)
T 2p6r_A 668 SLIG------RGIAERVVEGIS-VKSLNPESA 692 (702)
T ss_dssp HHHC------HHHHHHHHHHHH-HHC------
T ss_pred HHhC------hhHHHHHHHhcC-CCccCcchh
Confidence 7764 678999999999 999997643
No 6
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=98.62 E-value=3.6e-08 Score=103.34 Aligned_cols=91 Identities=12% Similarity=0.150 Sum_probs=77.0
Q ss_pred ccchhhccCCHHHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCCCccCCCCCCHHHHHHHhhcCCCCHHHHHcCCHHHHH
Q 019342 4 IPRTAQGHGWLRPAVGVVELSQSIIQAVPLSSRKATGGSTEGTAPFLQLPHFTEAVIKKIARKKVRTFQELRDMSLQDRA 83 (342)
Q Consensus 4 ~~~~a~~~GwL~~al~~m~L~Q~IvQA~W~~~~~~~~~~~~~~spLlQLPh~~~~~v~~l~~~~v~tl~~L~~m~~~er~ 83 (342)
+.++|...||...+..+.+|+|||.||+|. +.+||+|||||+...+++|.+.+++|+.+|.+++++++.
T Consensus 614 ~~~i~~~~g~~~~~~~l~~l~~rl~~gv~~-----------e~~~L~qlp~v~~~rar~L~~~G~~s~~dl~~~~~~~l~ 682 (720)
T 2zj8_A 614 LKEIAKVLGAYEIVDYLETLRVRVKYGIRE-----------ELIPLMQLPLVGRRRARALYNSGFRSIEDISQARPEELL 682 (720)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHTCCG-----------GGGGGTTSTTCCHHHHHHHHTTTCCSHHHHHTCCHHHHH
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHHHcCCCc-----------cchhhhhCCCCCHHHHHHHHHcCCCCHHHHHhCCHHHHH
Confidence 356888999986555555599999999998 789999999999999999998999999999999999998
Q ss_pred HHHhhccCCChHHHHHHHHHHhcCCc
Q 019342 84 ELLSQVGGFSSTEVQDVEMVLQMMPS 109 (342)
Q Consensus 84 ~lL~~~~~l~~~~~~~v~~v~~~iP~ 109 (342)
.+ . ++.+++++++..++.++|.
T Consensus 683 ~~-~---~~~~~i~~~~~~~~~~~~~ 704 (720)
T 2zj8_A 683 KI-E---GIGVKTVEAIFKFLGKNVK 704 (720)
T ss_dssp TS-T---TCCHHHHHHHHHHHC----
T ss_pred Hh-H---hHHHHHHHHHHHhcccccc
Confidence 76 3 4889999999999999998
No 7
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=98.31 E-value=5.4e-07 Score=94.08 Aligned_cols=89 Identities=8% Similarity=0.063 Sum_probs=77.9
Q ss_pred ccchhhccCCHHHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCCCccCCCCCCHHHHHHHhhcCCCCHHHHHcCCHHHHH
Q 019342 4 IPRTAQGHGWLRPAVGVVELSQSIIQAVPLSSRKATGGSTEGTAPFLQLPHFTEAVIKKIARKKVRTFQELRDMSLQDRA 83 (342)
Q Consensus 4 ~~~~a~~~GwL~~al~~m~L~Q~IvQA~W~~~~~~~~~~~~~~spLlQLPh~~~~~v~~l~~~~v~tl~~L~~m~~~er~ 83 (342)
+.++|..+||...+..+++|+|||.||+|. +..||+|||||....+++|.+.+++|+.+|. +++.++.
T Consensus 625 ~~~i~~~~~~~~~~~~l~~l~~rl~~gv~~-----------e~~~L~qlp~i~~~rar~L~~~g~~s~~~l~-~~~~~l~ 692 (715)
T 2va8_A 625 AYHLSRELKLNEHADKLRILNLRVRDGIKE-----------ELLELVQISGVGRKRARLLYNNGIKELGDVV-MNPDKVK 692 (715)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHTCCG-----------GGHHHHTSTTCCHHHHHHHHHTTCCSHHHHH-HCHHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHHHcCCCh-----------hhcchhhCCCCCHHHHHHHHHcCCCCHHHHh-CCHHHHH
Confidence 457889999999999999999999999998 7899999999999999999999999999999 9999999
Q ss_pred HHHhhccCCChHHHHHHHH-HHhcCCce
Q 019342 84 ELLSQVGGFSSTEVQDVEM-VLQMMPSL 110 (342)
Q Consensus 84 ~lL~~~~~l~~~~~~~v~~-v~~~iP~I 110 (342)
.+|+ +.+.+.+.+ +...+|.+
T Consensus 693 ~~l~------~~~~~~i~~~~~~~~~~~ 714 (715)
T 2va8_A 693 NLLG------QKLGEKVVQEAARLLNRF 714 (715)
T ss_dssp HHHC------HHHHHHHHHHHHHHHC--
T ss_pred HHhC------hhHHHHHHHHHHHhhccC
Confidence 8874 467777777 66667765
No 8
>1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B
Probab=95.42 E-value=0.018 Score=43.18 Aligned_cols=58 Identities=19% Similarity=0.342 Sum_probs=51.3
Q ss_pred CCCccCCCCCCHHHHHHHhhcCCCCHHHHHcCCHHHHHHHHhhccCCChHHHHHHHHHHhcC
Q 019342 46 TAPFLQLPHFTEAVIKKIARKKVRTFQELRDMSLQDRAELLSQVGGFSSTEVQDVEMVLQMM 107 (342)
Q Consensus 46 ~spLlQLPh~~~~~v~~l~~~~v~tl~~L~~m~~~er~~lL~~~~~l~~~~~~~v~~v~~~i 107 (342)
..+|++||+++...+.+|...++.|+.+|...+.+++..+ .|+++.....+...++.+
T Consensus 6 ~~~l~~L~Gi~~~~~~kL~e~Gi~TvedlA~~~~~eL~~i----~gise~kA~~ii~aAr~~ 63 (70)
T 1wcn_A 6 ADDLLNLEGVDRDLAFKLAARGVCTLEDLAEQGIDDLADI----EGLTDEKAGALIMAARNI 63 (70)
T ss_dssp CHHHHSSTTCCHHHHHHHHTTTCCSHHHHHTSCHHHHHTS----SSCCHHHHHHHHHHHHHH
T ss_pred hhHHHHcCCCCHHHHHHHHHcCCCcHHHHHcCCHHHHHHc----cCCCHHHHHHHHHHHHHc
Confidence 4579999999999999999999999999999998887765 469999999999888763
No 9
>2kz3_A Putative uncharacterized protein RAD51L3; RAD51D, homologous recombination, unknown function; NMR {Homo sapiens}
Probab=93.06 E-value=0.24 Score=38.32 Aligned_cols=50 Identities=22% Similarity=0.341 Sum_probs=41.6
Q ss_pred CCCCCHHHHHHHhhcCCCCHHHHHcCCHHHHHHHHhhccCCChHHHHHHHHHHh
Q 019342 52 LPHFTEAVIKKIARKKVRTFQELRDMSLQDRAELLSQVGGFSSTEVQDVEMVLQ 105 (342)
Q Consensus 52 LPh~~~~~v~~l~~~~v~tl~~L~~m~~~er~~lL~~~~~l~~~~~~~v~~v~~ 105 (342)
.|.+++.+++.|++++|.|..+|+..++.++.++++ ++-+.+.++.+.+.
T Consensus 9 ~p~Lse~~~~~L~~~~I~Tv~Dfl~~d~~eL~~~~~----ls~~~v~~l~r~l~ 58 (83)
T 2kz3_A 9 CPGLTEEMIQLLRSHRIKTVVDLVSADLEEVAQKCG----LSYKALVALRRVLL 58 (83)
T ss_dssp STTCCHHHHHHHHHTTCCCHHHHTTSCHHHHHHHHT----CCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHCCCCCHHHHHhCCHHHHHHHhC----CCHHHHHHHHHHHH
Confidence 489999999999999999999999999999988866 76666655555543
No 10
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=87.24 E-value=0.76 Score=42.74 Aligned_cols=56 Identities=13% Similarity=0.220 Sum_probs=45.4
Q ss_pred CCccCCCCCCHHHHHHHhhcCCCCHHHHHcCCHHHHHHHHhhccCCChHHHHHHHHHHhc
Q 019342 47 APFLQLPHFTEAVIKKIARKKVRTFQELRDMSLQDRAELLSQVGGFSSTEVQDVEMVLQM 106 (342)
Q Consensus 47 spLlQLPh~~~~~v~~l~~~~v~tl~~L~~m~~~er~~lL~~~~~l~~~~~~~v~~v~~~ 106 (342)
.+|..||++++..+++|++.++.|+.+|...+..++.++ .|++.+.+.+++..+..
T Consensus 3 ~~~~~l~gi~~~~~~kL~~~gi~t~~~~~~~~~~~L~~~----~gis~~~a~~~i~~a~~ 58 (322)
T 2i1q_A 3 DNLTDLPGVGPSTAEKLVEAGYIDFMKIATATVGELTDI----EGISEKAAAKMIMGARD 58 (322)
T ss_dssp --CTTSTTCCHHHHHHHHHHTCCSHHHHHTCCHHHHHTS----TTCCHHHHHHHHHHHHH
T ss_pred ccHhhcCCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHHh----hCcCHHHHHHHHHHHHH
Confidence 378899999999999999999999999999998776544 45888877777776654
No 11
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Probab=83.62 E-value=1.5 Score=33.84 Aligned_cols=53 Identities=13% Similarity=0.294 Sum_probs=43.5
Q ss_pred CCCccCCCCCCHHHHHHHhhcCCCCHHHHHcCCHHHHHHHHhhccCCChHH-HHHHHHHHh
Q 019342 46 TAPFLQLPHFTEAVIKKIARKKVRTFQELRDMSLQDRAELLSQVGGFSSTE-VQDVEMVLQ 105 (342)
Q Consensus 46 ~spLlQLPh~~~~~v~~l~~~~v~tl~~L~~m~~~er~~lL~~~~~l~~~~-~~~v~~v~~ 105 (342)
.+.|..+|++.+...+.|-++ +.++.+|..++.+++.++++ ... ++.|+.+++
T Consensus 17 ~s~L~~IpGIG~kr~~~LL~~-FgSl~~i~~AS~eEL~~vig------~~~~A~~I~~~l~ 70 (84)
T 1z00_B 17 QDFLLKMPGVNAKNCRSLMHH-VKNIAELAALSQDELTSILG------NAANAKQLYDFIH 70 (84)
T ss_dssp HHHHHTCSSCCHHHHHHHHHH-SSCHHHHHHSCHHHHHHHHS------CHHHHHHHHHHHT
T ss_pred HHHHHhCCCCCHHHHHHHHHH-cCCHHHHHHCCHHHHHHHhC------chHHHHHHHHHHH
Confidence 467889999999988887643 78999999999999999865 344 788888875
No 12
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=82.29 E-value=2.2 Score=30.84 Aligned_cols=54 Identities=13% Similarity=0.285 Sum_probs=43.8
Q ss_pred CCCccCCCCCCHHHHHHHhhcCCCCHHHHHcCCHHHHHHHHhhccCCChHH-HHHHHHHHhc
Q 019342 46 TAPFLQLPHFTEAVIKKIARKKVRTFQELRDMSLQDRAELLSQVGGFSSTE-VQDVEMVLQM 106 (342)
Q Consensus 46 ~spLlQLPh~~~~~v~~l~~~~v~tl~~L~~m~~~er~~lL~~~~~l~~~~-~~~v~~v~~~ 106 (342)
.+.|..+|++.+...+.|-++ ..++.++..++.+++.++++ ... ++.++++++.
T Consensus 3 ~s~L~~IpGIG~kr~~~LL~~-Fgs~~~i~~As~eeL~~vig------~~~~A~~I~~~l~~ 57 (63)
T 2a1j_A 3 QDFLLKMPGVNAKNCRSLMHH-VKNIAELAALSQDELTSILG------NAANAKQLYDFIHT 57 (63)
T ss_dssp CHHHHTSTTCCHHHHHHHHHH-CSSHHHHHTCCHHHHHHHHS------CHHHHHHHHHHHHC
T ss_pred HhHHHcCCCCCHHHHHHHHHH-cCCHHHHHHCCHHHHHHHcC------chHHHHHHHHHHhc
Confidence 467889999999888877643 67999999999999998855 355 7888888753
No 13
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=80.76 E-value=3.4 Score=39.28 Aligned_cols=57 Identities=16% Similarity=0.154 Sum_probs=46.0
Q ss_pred CCCccCCCCCCHHHHHHHhhcCCCCHHHHHcCCHHHHHHHHhhccCCChHHHHHHHHHHhc
Q 019342 46 TAPFLQLPHFTEAVIKKIARKKVRTFQELRDMSLQDRAELLSQVGGFSSTEVQDVEMVLQM 106 (342)
Q Consensus 46 ~spLlQLPh~~~~~v~~l~~~~v~tl~~L~~m~~~er~~lL~~~~~l~~~~~~~v~~v~~~ 106 (342)
..+|..||++++..+++|++.++.|+..+...++.++..+. |++...+.++++.+..
T Consensus 34 ~~~l~~l~Gi~~~~~~kL~~ag~~t~~~~~~~~~~~L~~~~----~~s~~~~~~~l~~~~~ 90 (349)
T 1pzn_A 34 IRSIEDLPGVGPATAEKLREAGYDTLEAIAVASPIELKEVA----GISEGTALKIIQAARK 90 (349)
T ss_dssp -CCSSCCTTCCHHHHHHHHTTTCCSHHHHHTCCHHHHHHHH----CCCHHHHHHHHHHHHH
T ss_pred cccHHHcCCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHhhc----CCCHHHHHHHHHHHhh
Confidence 35799999999999999999999999999999988877664 4777777666666543
No 14
>1z3e_B DNA-directed RNA polymerase alpha chain; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: a.60.3.1 PDB: 3ihq_B
Probab=79.07 E-value=4.2 Score=30.51 Aligned_cols=56 Identities=16% Similarity=0.273 Sum_probs=46.1
Q ss_pred CCccCCCCCCHHHHHHHhhcCCCCHHHHHcCCHHHHHHHHhhccCCChHHHHHHHHHHhcC
Q 019342 47 APFLQLPHFTEAVIKKIARKKVRTFQELRDMSLQDRAELLSQVGGFSSTEVQDVEMVLQMM 107 (342)
Q Consensus 47 spLlQLPh~~~~~v~~l~~~~v~tl~~L~~m~~~er~~lL~~~~~l~~~~~~~v~~v~~~i 107 (342)
.|+-+| .++.....-|++.+|.|+.+|+.++.+++.++ -+|..+-+++|...+..+
T Consensus 9 ~~Ie~L-~LS~Ra~NcLkragI~Tv~dL~~~s~~dLlki----~n~G~kSl~EI~~~L~~~ 64 (73)
T 1z3e_B 9 MTIEEL-DLSVRSYNCLKRAGINTVQELANKTEEDMMKV----RNLGRKSLEEVKAKLEEL 64 (73)
T ss_dssp CBGGGS-CCBHHHHHHHHHTTCCBHHHHHTSCHHHHHTS----TTCCHHHHHHHHHHHHHT
T ss_pred CcHHHh-CCCHHHHHHHHHcCCCcHHHHHcCCHHHHHHc----CCCCHHHHHHHHHHHHHh
Confidence 577777 58888888888889999999999998876554 458888899999888865
No 15
>2lpe_A Kinase suppressor of RAS 1; SAM domain, CC-SAM, coiled-coil, signaling protein, scaffold protein; NMR {Mus musculus}
Probab=78.74 E-value=4 Score=34.84 Aligned_cols=59 Identities=24% Similarity=0.340 Sum_probs=46.8
Q ss_pred CCCccCCCC---------CCHHHHHHHhhcCCCCHHHHHcCCHHHHHHHHhhccCCChHHHHHHHHHHhcC
Q 019342 46 TAPFLQLPH---------FTEAVIKKIARKKVRTFQELRDMSLQDRAELLSQVGGFSSTEVQDVEMVLQMM 107 (342)
Q Consensus 46 ~spLlQLPh---------~~~~~v~~l~~~~v~tl~~L~~m~~~er~~lL~~~~~l~~~~~~~v~~v~~~i 107 (342)
.+.|.++|. +.++.++.+ .+..||..|++|++.+.+.+|+. .|-.+++...+.++++++
T Consensus 77 ~~~l~~yP~l~~WLrvVgl~~esiq~i--~~~~TLe~LLemsd~evr~~L~~-~ga~eEEcrRL~~Al~nL 144 (149)
T 2lpe_A 77 TAELNSYPRFSDWLYIFNVRPEVVQEI--PQELTLDALLEMDEAKAKEMLRR-WGASTEECSRLQQALTCL 144 (149)
T ss_dssp CTTGGGCSCSTTTHHHHTCCHHHHTTS--CTTCSHHHHTTSCHHHHHHHHHT-TTCCTHHHHHHHHHHTTG
T ss_pred chhhhcCchHHHHHHHhccCHHHHHHh--hhhccHHHHHhcCHHHHHHHHHH-cCCCHHHHHHHHHHHHHH
Confidence 567888996 467878777 34689999999999999999986 455677788888887765
No 16
>1u9l_A Transcription elongation protein NUSA; escherichia coli NUSA, phage lambda protein N, regulation of RNA binding, transcription antitermination, X-RAY crystallography; 1.90A {Escherichia coli} SCOP: a.60.4.2 PDB: 1wcl_A
Probab=78.24 E-value=1.3 Score=33.01 Aligned_cols=56 Identities=14% Similarity=0.252 Sum_probs=45.7
Q ss_pred CccCCCCCCHHHHHHHhhcCCCCHHHHHcCCHHHHHHHHhhccCCChHHHHHHHHHHhcC
Q 019342 48 PFLQLPHFTEAVIKKIARKKVRTFQELRDMSLQDRAELLSQVGGFSSTEVQDVEMVLQMM 107 (342)
Q Consensus 48 pLlQLPh~~~~~v~~l~~~~v~tl~~L~~m~~~er~~lL~~~~~l~~~~~~~v~~v~~~i 107 (342)
.|++.+++++..+++|...+..|+..+...+.+++..+ .|+++..+.++...++.+
T Consensus 7 ~f~~~lgI~e~~a~~L~~~Gf~tve~vA~~~~~eL~~I----~G~dE~~a~~l~~~A~~~ 62 (70)
T 1u9l_A 7 TFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEI----EGLDEPTVEALRERAKNA 62 (70)
T ss_dssp HHHHHHTCCHHHHHHHHHTTCCCHHHHHHSCHHHHTTS----TTCCHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHcCcCcHHHHHcCCHHHHhhc----cCCCHHHHHHHHHHHHHH
Confidence 45666789999999999999999999999987765443 679999888888877653
No 17
>3k4g_A DNA-directed RNA polymerase subunit alpha; bacterial transcription regulation, DNA-directed RNA polymer nucleotidyltransferase; HET: MLY; 2.05A {Escherichia coli k-12} SCOP: a.60.3.1 PDB: 3n4m_B* 1lb2_B* 3n97_B* 1xs9_D
Probab=75.47 E-value=5.3 Score=31.01 Aligned_cols=56 Identities=11% Similarity=0.109 Sum_probs=46.2
Q ss_pred CCccCCCCCCHHHHHHHhhcCCCCHHHHHcCCHHHHHHHHhhccCCChHHHHHHHHHHhcC
Q 019342 47 APFLQLPHFTEAVIKKIARKKVRTFQELRDMSLQDRAELLSQVGGFSSTEVQDVEMVLQMM 107 (342)
Q Consensus 47 spLlQLPh~~~~~v~~l~~~~v~tl~~L~~m~~~er~~lL~~~~~l~~~~~~~v~~v~~~i 107 (342)
.|+-+| .++.....-|++.+|.|+.+|+.++.+++.++ .+|..+-+++|...+..+
T Consensus 12 ~~I~~L-~LSvRa~NcLkragI~Tv~dL~~~se~dLlki----~n~G~KSl~EI~~~L~~~ 67 (86)
T 3k4g_A 12 RPVDDL-ELTVRSANCLXAEAIHYIGDLVQRTEVELLXT----PNLGXXSLTEIXDVLASR 67 (86)
T ss_dssp SBGGGG-CCCHHHHHHHHHTTCCBHHHHHHSCHHHHHTS----TTCCHHHHHHHHHHHHTT
T ss_pred CcHHHh-CCCHHHHHHHHHcCCCcHHHHHhCCHHHHhhc----cccCcccHHHHHHHHHHc
Confidence 456666 68888888888899999999999998876554 458889999999998877
No 18
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=73.34 E-value=0.82 Score=43.02 Aligned_cols=15 Identities=13% Similarity=0.102 Sum_probs=6.2
Q ss_pred HHHHHHHHhcCCcee
Q 019342 97 VQDVEMVLQMMPSLT 111 (342)
Q Consensus 97 ~~~v~~v~~~iP~I~ 111 (342)
+..+...+..+|.|+
T Consensus 176 ~~~l~~~l~~~~~L~ 190 (386)
T 2ca6_A 176 MKEWAKTFQSHRLLH 190 (386)
T ss_dssp HHHHHHHHHHCTTCC
T ss_pred HHHHHHHHHhCCCcC
Confidence 333334444444443
No 19
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=73.12 E-value=0.71 Score=43.32 Aligned_cols=58 Identities=19% Similarity=0.220 Sum_probs=0.0
Q ss_pred CCCCccCCCCCCHHHHHHHhhcCCCCHHHHHcCCHHHHHHHHhhccCCChHHHHHHHHHHhc
Q 019342 45 GTAPFLQLPHFTEAVIKKIARKKVRTFQELRDMSLQDRAELLSQVGGFSSTEVQDVEMVLQM 106 (342)
Q Consensus 45 ~~spLlQLPh~~~~~v~~l~~~~v~tl~~L~~m~~~er~~lL~~~~~l~~~~~~~v~~v~~~ 106 (342)
...+|-+||++++..+++|++.++.|+.+++..++.++... .|+++..+..+++.+..
T Consensus 10 ~~~~~~~l~g~~~~~~~~l~~~g~~t~~~~~~~~~~~l~~~----~g~s~~~~~~~~~~~~~ 67 (324)
T 2z43_A 10 NIKTINDLPGISQTVINKLIEAGYSSLETLAVASPQDLSVA----AGIPLSTAQKIIKEARD 67 (324)
T ss_dssp --------------------------------------------------------------
T ss_pred CCccHHHcCCCCHHHHHHHHHcCCCcHHHHHcCCHHHHHHh----hCCCHHHHHHHHHHHHh
Confidence 34589999999999999999999999999998887665544 34666666666655543
No 20
>3gfk_B DNA-directed RNA polymerase subunit alpha; protein-protein complex, cytoplasm, redox-active center, stress response, transcription; 2.30A {Bacillus subtilis} SCOP: a.60.3.1
Probab=69.89 E-value=4.5 Score=30.90 Aligned_cols=56 Identities=16% Similarity=0.273 Sum_probs=44.1
Q ss_pred CCccCCCCCCHHHHHHHhhcCCCCHHHHHcCCHHHHHHHHhhccCCChHHHHHHHHHHhcC
Q 019342 47 APFLQLPHFTEAVIKKIARKKVRTFQELRDMSLQDRAELLSQVGGFSSTEVQDVEMVLQMM 107 (342)
Q Consensus 47 spLlQLPh~~~~~v~~l~~~~v~tl~~L~~m~~~er~~lL~~~~~l~~~~~~~v~~v~~~i 107 (342)
.|+-+| .++.....-|++.+|.|+.+|+.++.+++.++ .+|..+-+++|...+..+
T Consensus 16 ~~Ie~L-~LS~Ra~NcLk~agI~Tv~dL~~~se~dLlki----~n~G~kSl~EI~~~L~e~ 71 (79)
T 3gfk_B 16 MTIEEL-DLSVRSYNCLKRAGINTVQELANKTEEDMMKV----RNLGRKSLEEVKAKLEEL 71 (79)
T ss_dssp CBGGGS-CCBHHHHHHHHHTTCCBHHHHTTCCHHHHTTS----TTCHHHHHHHHHHHHHHT
T ss_pred CcHHHh-CCCHHHHHHHHHhCCCCHHHHHhCCHHHHHHc----CCCCHhHHHHHHHHHHHc
Confidence 455566 68888888888899999999999998876544 347778888888887764
No 21
>1ci4_A Protein (barrier-TO-autointegration factor (BAF) ); DNA binding protein, retroviral integration, preintegration complex; 1.90A {Homo sapiens} SCOP: a.60.5.1 PDB: 1qck_A 2bzf_A 2ezx_A 2ezy_A 2ezz_A 2odg_A
Probab=67.93 E-value=17 Score=28.34 Aligned_cols=62 Identities=18% Similarity=0.179 Sum_probs=49.1
Q ss_pred CCCCccCCCCCCHHHHHHHhhcCCCC----HHHHHcC--CHHHHHHHHhhccCCChHHHHHHHHHHhc
Q 019342 45 GTAPFLQLPHFTEAVIKKIARKKVRT----FQELRDM--SLQDRAELLSQVGGFSSTEVQDVEMVLQM 106 (342)
Q Consensus 45 ~~spLlQLPh~~~~~v~~l~~~~v~t----l~~L~~m--~~~er~~lL~~~~~l~~~~~~~v~~v~~~ 106 (342)
++-++..||++.+...++|..+++.. |++|+-| +.+.-...|....|.+.+|..+.++.++.
T Consensus 16 geK~V~evpGIG~~~~~~L~~~Gf~kAy~lLGqFL~l~kd~~~F~~WLk~~~gan~kq~~dc~~cl~e 83 (89)
T 1ci4_A 16 GEKPVGSLAGIGEVLGKKLEERGFDKAYVVLGQFLVLKKDEDLFREWLKDTCGANAKQSRDCFGCLRE 83 (89)
T ss_dssp TTCCGGGSTTCCHHHHHHHHHTTCCSHHHHHHHHHHTTTCHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred CCCCcccCCCcCHHHHHHHHHcCccHHHHHHHHHHHcCCCHHHHHHHHHHHhCcCHHHHHHHHHHHHH
Confidence 56799999999999999999887765 6666655 56666777776568899999998887764
No 22
>1b22_A DNA repair protein RAD51; DNA binding, riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.60.4.1
Probab=65.02 E-value=3 Score=33.94 Aligned_cols=58 Identities=12% Similarity=0.194 Sum_probs=49.2
Q ss_pred CCccCCC--CCCHHHHHHHhhcCCCCHHHHHcCCHHHHHHHHhhccCCChHHHHHHHHHHhcCC
Q 019342 47 APFLQLP--HFTEAVIKKIARKKVRTFQELRDMSLQDRAELLSQVGGFSSTEVQDVEMVLQMMP 108 (342)
Q Consensus 47 spLlQLP--h~~~~~v~~l~~~~v~tl~~L~~m~~~er~~lL~~~~~l~~~~~~~v~~v~~~iP 108 (342)
.++..|| ++.+..+++|...++.|+..+...++.++..+ .|+++....++...++.+-
T Consensus 23 ~~I~~L~~~GIg~~~i~kL~eAG~~Tve~va~a~~~eL~~i----~GIse~ka~kIi~aA~kl~ 82 (114)
T 1b22_A 23 QPISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKELINI----KGISEAKADKILAEAAKLV 82 (114)
T ss_dssp CCHHHHHHTTCSHHHHHHHHTTCCSSGGGBTSSBHHHHHTT----TTCSTTHHHHHHHHHHHHS
T ss_pred ccHHHHHhcCCCHHHHHHHHHcCcCcHHHHHhCCHHHHHHc----cCCCHHHHHHHHHHHHHHc
Confidence 4777788 89999999999999999999999887766544 5799999999999998864
No 23
>3mab_A Uncharacterized protein; NYSGXRC, PSI-2, structural genomics; 1.42A {Listeria monocytogenes} PDB: 3bqt_A
Probab=61.57 E-value=33 Score=26.72 Aligned_cols=38 Identities=18% Similarity=0.346 Sum_probs=33.8
Q ss_pred CCCccCCCCCCHHHHHHHhhcCCCCHHHHHcCCHHHHH
Q 019342 46 TAPFLQLPHFTEAVIKKIARKKVRTFQELRDMSLQDRA 83 (342)
Q Consensus 46 ~spLlQLPh~~~~~v~~l~~~~v~tl~~L~~m~~~er~ 83 (342)
.+.|..||++.+.+.+.|.+-+|.|..+|..+...+.-
T Consensus 3 m~~L~dLPNig~~~e~~L~~~GI~t~~~Lr~~Ga~~ay 40 (93)
T 3mab_A 3 LANLSELPNIGKVLEQDLIKAGIKTPVELKDVGSKEAF 40 (93)
T ss_dssp CCCGGGSTTCCHHHHHHHHHTTCCSHHHHHHHCHHHHH
T ss_pred HHHHhhCCCCCHHHHHHHHHcCCCCHHHHHhCCHHHHH
Confidence 57899999999999999999999999999999876543
No 24
>1coo_A RNA polymerase alpha subunit; transcription regulation, nucleotidyl transferase; NMR {Escherichia coli} SCOP: a.60.3.1 PDB: 2jzb_A
Probab=58.28 E-value=7.7 Score=30.79 Aligned_cols=55 Identities=11% Similarity=0.144 Sum_probs=42.3
Q ss_pred CccCCCCCCHHHHHHHhhcCCCCHHHHHcCCHHHHHHHHhhccCCChHHHHHHHHHHhcC
Q 019342 48 PFLQLPHFTEAVIKKIARKKVRTFQELRDMSLQDRAELLSQVGGFSSTEVQDVEMVLQMM 107 (342)
Q Consensus 48 pLlQLPh~~~~~v~~l~~~~v~tl~~L~~m~~~er~~lL~~~~~l~~~~~~~v~~v~~~i 107 (342)
|+-+| .++.....-|++.+|.|+.+|+.++.+++.++ .+|..+-+++|...+..+
T Consensus 25 ~Ie~L-~LSvRs~NcLkragI~Tv~dL~~~se~dLlki----~n~G~KSl~EI~~~L~~~ 79 (98)
T 1coo_A 25 PVDDL-ELTVRSANCLKAEAIHYIGDLVQRTEVELLKT----PNLGKKSLTEIKDVLASR 79 (98)
T ss_dssp BGGGG-TCCTTTHHHHHTTTCCBHHHHHTSCHHHHTTS----TTCCHHHHHHHHHHHHHT
T ss_pred cHHHh-CCCHHHHHHHHHcCCCcHHHHHhCCHHHHHhc----CCCCHHHHHHHHHHHHHc
Confidence 45555 46666666777889999999999998876544 458888899999998876
No 25
>3bq0_A POL IV, DBH, DNA polymerase IV; Y-family, lesion bypass; HET: DNA; 2.60A {Sulfolobus acidocaldarius} SCOP: d.240.1.1 e.8.1.7 PDB: 3bq1_A* 3bq2_A* 1k1q_A 1k1s_A
Probab=57.89 E-value=14 Score=34.91 Aligned_cols=59 Identities=5% Similarity=0.119 Sum_probs=48.6
Q ss_pred CCccCCCCCCHHHHHHHhhcCCCCHHHHHcCCHHHHHHHHhhccCCChHHHHHHHHHHhcCCcee
Q 019342 47 APFLQLPHFTEAVIKKIARKKVRTFQELRDMSLQDRAELLSQVGGFSSTEVQDVEMVLQMMPSLT 111 (342)
Q Consensus 47 spLlQLPh~~~~~v~~l~~~~v~tl~~L~~m~~~er~~lL~~~~~l~~~~~~~v~~v~~~iP~I~ 111 (342)
-|+..||++...+.++|.+.+|.|+.+|..++...+...++. .....++..+.-+..-.
T Consensus 179 lpv~~l~GiG~~~~~~L~~~Gi~t~~dL~~~~~~~L~~~fG~------~~g~~l~~~a~G~d~~~ 237 (354)
T 3bq0_A 179 LDIDEIPGIGSVLARRLNELGIQKLRDILSKNYNELEKITGK------AKALYLLKLAQNKYSEP 237 (354)
T ss_dssp CBSTTSTTCCHHHHHHHTTTTCCBGGGGGGSCHHHHHHHHCH------HHHHHHHHHHTTCCCCC
T ss_pred CCcccccCcCHHHHHHHHHcCCccHHHHhcCCHHHHHHHHCH------HHHHHHHHHhCCCCCCC
Confidence 488999999999999999999999999999998888777662 22677788887776544
No 26
>1jx4_A DNA polymerase IV (family Y); protein-DNA complex, Y-family, transferase-D complex; HET: DNA MSE ADI; 1.70A {Sulfolobus solfataricus} SCOP: d.240.1.1 e.8.1.7 PDB: 1jxl_A* 1n48_A* 1n56_A* 1ryr_A* 1rys_A* 1s0m_A* 1s0n_A* 1s0o_A* 1s10_A* 1s97_A* 1s9f_A* 2ia6_A* 2ibk_A* 2r8g_A* 2r8h_A* 2r8i_A* 2rdj_A* 3fds_A* 3m9m_B* 3m9n_B* ...
Probab=56.85 E-value=15 Score=34.65 Aligned_cols=59 Identities=3% Similarity=0.098 Sum_probs=48.0
Q ss_pred CCccCCCCCCHHHHHHHhhcCCCCHHHHHcCCHHHHHHHHhhccCCChHHHHHHHHHHhcCCcee
Q 019342 47 APFLQLPHFTEAVIKKIARKKVRTFQELRDMSLQDRAELLSQVGGFSSTEVQDVEMVLQMMPSLT 111 (342)
Q Consensus 47 spLlQLPh~~~~~v~~l~~~~v~tl~~L~~m~~~er~~lL~~~~~l~~~~~~~v~~v~~~iP~I~ 111 (342)
-|+..||++...+.++|.+.+|.|+.+|..++...+...++. .....++..+.-+..-.
T Consensus 178 lpv~~l~GiG~~~~~~L~~~Gi~t~~dL~~~~~~~L~~~fG~------~~g~~l~~~a~G~d~~~ 236 (352)
T 1jx4_A 178 LDIADVPGIGNITAEKLKKLGINKLVDTLSIEFDKLKGMIGE------AKAKYLISLARDEYNEP 236 (352)
T ss_dssp SBGGGSTTCCHHHHHHHHTTTCCBGGGGGSSCHHHHHHHHCH------HHHHHHHHHHTTCCCCC
T ss_pred CCCCcccccCHHHHHHHHHcCCchHHHHHCCCHHHHHHhcCh------hHHHHHHHHhCCCCCCC
Confidence 589999999999999999999999999999998888777662 22667777777665533
No 27
>4dez_A POL IV 1, DNA polymerase IV 1; Y-family, transferase; HET: DNA; 2.60A {Mycobacterium smegmatis}
Probab=55.21 E-value=30 Score=32.63 Aligned_cols=57 Identities=12% Similarity=-0.038 Sum_probs=46.0
Q ss_pred CCccCCCCCCHHHHHHHhhcCCCCHHHHHcCCHHHHHHHHhhccCCChHHHHHHHHHHhcCCc
Q 019342 47 APFLQLPHFTEAVIKKIARKKVRTFQELRDMSLQDRAELLSQVGGFSSTEVQDVEMVLQMMPS 109 (342)
Q Consensus 47 spLlQLPh~~~~~v~~l~~~~v~tl~~L~~m~~~er~~lL~~~~~l~~~~~~~v~~v~~~iP~ 109 (342)
-|+.-||++.....++|.+.+|.|+.+|..++...+...++ ......+...++-+..
T Consensus 178 lpv~~l~GiG~~~~~~L~~~GI~Ti~dL~~~~~~~L~~~fG------~~~g~~l~~~a~G~d~ 234 (356)
T 4dez_A 178 RPPDALWGVGPKTTKKLAAMGITTVADLAVTDPSVLTTAFG------PSTGLWLLLLAKGGGD 234 (356)
T ss_dssp SCGGGSTTCCHHHHHHHHHTTCCSHHHHHTSCHHHHHHHHC------HHHHHHHHHHHTTCCC
T ss_pred CcHHHHcCCchhHHHHHHHcCCCeecccccCCHHHHHHHhC------ChHHHHHHHHHcCCCc
Confidence 58888999999999999999999999999999988777765 2345566667666544
No 28
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=54.91 E-value=22 Score=26.70 Aligned_cols=55 Identities=13% Similarity=0.124 Sum_probs=42.0
Q ss_pred CCccCCCCCCHHHHHHHhhcCCCCHHHHHcCCHHHHHHHHhhccCCChHHHHHHHHHHhc
Q 019342 47 APFLQLPHFTEAVIKKIARKKVRTFQELRDMSLQDRAELLSQVGGFSSTEVQDVEMVLQM 106 (342)
Q Consensus 47 spLlQLPh~~~~~v~~l~~~~v~tl~~L~~m~~~er~~lL~~~~~l~~~~~~~v~~v~~~ 106 (342)
..|.++|++.+..+++|-+. ..++..++..+.+++..+ .|+.+..+..+..+++.
T Consensus 19 ~~L~~IpgIG~~~A~~Ll~~-fgsl~~l~~a~~~eL~~i----~GIG~~~a~~I~~~l~~ 73 (89)
T 1z00_A 19 ECLTTVKSVNKTDSQTLLTT-FGSLEQLIAASREDLALC----PGLGPQKARRLFDVLHE 73 (89)
T ss_dssp HHHTTSSSCCHHHHHHHHHH-TCBHHHHHHCCHHHHHTS----TTCCHHHHHHHHHHHHS
T ss_pred HHHHcCCCCCHHHHHHHHHH-CCCHHHHHhCCHHHHHhC----CCCCHHHHHHHHHHHHH
Confidence 35678999999888888643 467999999888765543 56888888888888764
No 29
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=54.74 E-value=9.6 Score=28.05 Aligned_cols=56 Identities=16% Similarity=0.210 Sum_probs=40.6
Q ss_pred CCCCccCCCCCCHHHHHHHhhcCCCCHHHHHcCCHHHHHHHHhhccCCChHHHHHHHHHHh
Q 019342 45 GTAPFLQLPHFTEAVIKKIARKKVRTFQELRDMSLQDRAELLSQVGGFSSTEVQDVEMVLQ 105 (342)
Q Consensus 45 ~~spLlQLPh~~~~~v~~l~~~~v~tl~~L~~m~~~er~~lL~~~~~l~~~~~~~v~~v~~ 105 (342)
..+.|.++|++.+..+++|-+. ..++..++..+.+++..+ .|+.+..+..+..+++
T Consensus 22 ~~~~L~~I~gIG~~~A~~Ll~~-fgsl~~l~~a~~eeL~~i----~GIG~~~a~~I~~~~~ 77 (78)
T 1kft_A 22 NTSSLETIEGVGPKRRQMLLKY-MGGLQGLRNASVEEIAKV----PGISQGLAEKIFWSLK 77 (78)
T ss_dssp -CCGGGGCTTCSSSHHHHHHHH-HSCHHHHHHCCHHHHTTS----SSTTSHHHHHHHHHHT
T ss_pred HHHHHhcCCCCCHHHHHHHHHH-cCCHHHHHHCCHHHHHHC----CCCCHHHHHHHHHHHh
Confidence 3578899999998887777543 457888998887765433 5677787887777654
No 30
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=52.30 E-value=14 Score=35.86 Aligned_cols=56 Identities=20% Similarity=0.208 Sum_probs=45.8
Q ss_pred CCccCCCC--CCHHHHHHHhhcCCCCHHHHHcCCHHHHHHHHhhccCCChHHHHHHHHHHhc
Q 019342 47 APFLQLPH--FTEAVIKKIARKKVRTFQELRDMSLQDRAELLSQVGGFSSTEVQDVEMVLQM 106 (342)
Q Consensus 47 spLlQLPh--~~~~~v~~l~~~~v~tl~~L~~m~~~er~~lL~~~~~l~~~~~~~v~~v~~~ 106 (342)
.++-.|+. +++..+++|.+.++.|+.+|...+..++.++ .|++...+..+.+.+..
T Consensus 81 ~~~~~l~~~gi~~~~~~~L~~ag~~tv~~~~~~~~~~L~~~----~gis~~~~~~i~~~a~~ 138 (400)
T 3lda_A 81 VPIEKLQVNGITMADVKKLRESGLHTAEAVAYAPRKDLLEI----KGISEAKADKLLNEAAR 138 (400)
T ss_dssp CBGGGGCCTTCCHHHHHHHHHTTCCBHHHHHHSCHHHHHTS----TTCCHHHHHHHHHHHHH
T ss_pred cCHHHHHhCCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHHH----hCCCHHHHHHHHHHHHH
Confidence 46667776 8999999999999999999999998877655 45888888887777664
No 31
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=50.46 E-value=24 Score=26.66 Aligned_cols=54 Identities=13% Similarity=0.138 Sum_probs=40.3
Q ss_pred CCccCCCCCCHHHHHHHhhcCCCCHHHHHcCCHHHHHHHHhhccCCChHHHHHHHHHHh
Q 019342 47 APFLQLPHFTEAVIKKIARKKVRTFQELRDMSLQDRAELLSQVGGFSSTEVQDVEMVLQ 105 (342)
Q Consensus 47 spLlQLPh~~~~~v~~l~~~~v~tl~~L~~m~~~er~~lL~~~~~l~~~~~~~v~~v~~ 105 (342)
..|..+|++.+..+++|-+. ..++..++..+.+++..+ .|+.+..+..+..++.
T Consensus 32 ~~L~~IpgIG~~~A~~Ll~~-fgs~~~l~~as~~eL~~i----~GIG~~~a~~I~~~l~ 85 (91)
T 2a1j_B 32 ECLTTVKSVNKTDSQTLLTT-FGSLEQLIAASREDLALC----PGLGPQKARRLFDVLH 85 (91)
T ss_dssp HHHTTSTTCCHHHHHHHHHH-HSSHHHHHSCCHHHHHTS----SSCCSHHHHHHHHHHH
T ss_pred HHHHcCCCCCHHHHHHHHHH-CCCHHHHHhCCHHHHHhC----CCCCHHHHHHHHHHHh
Confidence 35668999999888877543 457899998887765443 5688888888887764
No 32
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=49.53 E-value=23 Score=25.18 Aligned_cols=55 Identities=13% Similarity=0.298 Sum_probs=40.4
Q ss_pred CCccCCCCCCHHHHHHHhhcCCCCHHHHHcCCHHHHHHHHhhccCCChHHHHHHHHHHhc
Q 019342 47 APFLQLPHFTEAVIKKIARKKVRTFQELRDMSLQDRAELLSQVGGFSSTEVQDVEMVLQM 106 (342)
Q Consensus 47 spLlQLPh~~~~~v~~l~~~~v~tl~~L~~m~~~er~~lL~~~~~l~~~~~~~v~~v~~~ 106 (342)
..|.++|++.+..++.|-.. ..++..++..+.+++.. +.|+.+..+..+..++..
T Consensus 14 ~~L~~i~giG~~~a~~Ll~~-fgs~~~l~~a~~~~L~~----i~Gig~~~a~~i~~~~~~ 68 (75)
T 1x2i_A 14 LIVEGLPHVSATLARRLLKH-FGSVERVFTASVAELMK----VEGIGEKIAKEIRRVITA 68 (75)
T ss_dssp HHHTTSTTCCHHHHHHHHHH-HCSHHHHHHCCHHHHTT----STTCCHHHHHHHHHHHHS
T ss_pred HHHcCCCCCCHHHHHHHHHH-cCCHHHHHhCCHHHHhc----CCCCCHHHHHHHHHHHhC
Confidence 35788999999888877643 46788888887765433 356888888888777654
No 33
>3osn_A DNA polymerase IOTA; hoogsteen base PAIR, protein-DNA complex, Y-family DNA polym translesion synthesis, nucleoside triphosphate; HET: DNA DOC 6OG TTP; 1.90A {Homo sapiens} PDB: 2dpj_A* 2fll_A* 2fln_A* 2flp_A* 3epg_A* 3epi_A* 2dpi_A* 3g6v_A* 3g6y_A* 3g6x_A* 3gv7_B* 3gv8_B* 3ngd_A* 3gv5_B* 3q8p_B* 3q8q_B* 3q8r_B* 3q8s_B* 4ebc_A* 4ebd_A* ...
Probab=47.09 E-value=36 Score=33.16 Aligned_cols=55 Identities=11% Similarity=0.081 Sum_probs=44.3
Q ss_pred CccCCCCCCHHHHHHHhhcCCCCHHHHHcCCHHHHHHHHhhccCCChHHHHHHHHHHhcCC
Q 019342 48 PFLQLPHFTEAVIKKIARKKVRTFQELRDMSLQDRAELLSQVGGFSSTEVQDVEMVLQMMP 108 (342)
Q Consensus 48 pLlQLPh~~~~~v~~l~~~~v~tl~~L~~m~~~er~~lL~~~~~l~~~~~~~v~~v~~~iP 108 (342)
|+..||++.....++|.+.+|.|+.+|..++...+...|+. .....+...+.-+.
T Consensus 235 pv~~l~GIG~~t~~~L~~lGI~TigdLa~~~~~~L~~~fG~------~~g~~L~~~a~G~d 289 (420)
T 3osn_A 235 HIKEIPGIGYKTAKCLEALGINSVRDLQTFSPKILEKELGI------SVAQRIQKLSFGED 289 (420)
T ss_dssp SGGGSTTCCHHHHHHHHHTTCCSHHHHHHSCHHHHHHHHHH------HHHHHHHHHHTTCC
T ss_pred cHHHccCCCHHHHHHHHHhCCCcHHHHhhCCHHHHHHHhCc------hHHHHHHHHhcCCC
Confidence 58888999999999999999999999999999888877762 34566666665543
No 34
>3gqc_A DNA repair protein REV1; protein-DNA complex, DNA damage, DNA repair, DNA synthesis, binding, magnesium, metal-binding; HET: DNA DOC DCP; 2.50A {Homo sapiens}
Probab=46.41 E-value=23 Score=35.64 Aligned_cols=55 Identities=15% Similarity=0.147 Sum_probs=44.3
Q ss_pred CCccCCCCCCHHHHHHHhhcCCCCHHHHHcCCHHHHHHHHhhccCCChHHHHHHHHHHhcC
Q 019342 47 APFLQLPHFTEAVIKKIARKKVRTFQELRDMSLQDRAELLSQVGGFSSTEVQDVEMVLQMM 107 (342)
Q Consensus 47 spLlQLPh~~~~~v~~l~~~~v~tl~~L~~m~~~er~~lL~~~~~l~~~~~~~v~~v~~~i 107 (342)
-|+..||++...+.++|.+.+|.|+.+|..++...+...|+. .....+...|.-+
T Consensus 315 LPV~~l~GIG~~t~~kL~~lGI~TigDLa~~~~~~L~~~fG~------~~g~~L~~~a~Gi 369 (504)
T 3gqc_A 315 QLVTNLPGVGHSMESKLASLGIKTCGDLQYMTMAKLQKEFGP------KTGQMLYRFCRGL 369 (504)
T ss_dssp SBGGGSTTCCHHHHHHHHHTTCCBHHHHTTSCHHHHHHHHCH------HHHHHHHHHTTTC
T ss_pred CChhHhhCcCHHHHHHHHHcCCCcHHHHHhccHHHHHHhhCh------hHHHHHHHHhcCC
Confidence 589999999999999999999999999999999887777652 3355565555544
No 35
>4f4y_A POL IV, DNA polymerase IV; Y-family polymerase, transferase-DNA complex; HET: DNA DCP; 2.34A {Sulfolobus acidocaldarius} PDB: 3bq0_A* 3bq1_A* 3bq2_A* 4hyk_A* 1k1q_A 1k1s_A
Probab=46.33 E-value=18 Score=34.49 Aligned_cols=58 Identities=3% Similarity=0.096 Sum_probs=46.2
Q ss_pred CCccCCCCCCHHHHHHHhhcCCCCHHHHHcCCHHHHHHHHhhccCCChHHHHHHHHHHhcCCce
Q 019342 47 APFLQLPHFTEAVIKKIARKKVRTFQELRDMSLQDRAELLSQVGGFSSTEVQDVEMVLQMMPSL 110 (342)
Q Consensus 47 spLlQLPh~~~~~v~~l~~~~v~tl~~L~~m~~~er~~lL~~~~~l~~~~~~~v~~v~~~iP~I 110 (342)
-|+..||++...+.++|.+.+|.|+.+|..++...+...++ ......+...+.-+..-
T Consensus 179 lpv~~l~GiG~~~~~~L~~~GI~Ti~dL~~~~~~~L~~~fG------~~~g~~l~~~a~G~d~~ 236 (362)
T 4f4y_A 179 LDIDEIPGIGSVLARRLNELGIQKLRDILSKNYNELEKITG------KAKALYLLKLAQDEYNE 236 (362)
T ss_dssp CBSTTSTTCCSTTHHHHHHTTCCBGGGGTTSCHHHHHHHHC------HHHHHHHHHHHTTCCCC
T ss_pred CChhhccCCCHHHHHHHHHcCCChHHHHhcCCHHHHHHHhC------hHHHHHHHHHhcCCCCC
Confidence 58889999999999999999999999999999888776665 24566677766666543
No 36
>1im4_A DBH; DNA polymerase PALM, thumb, fingers, helix-hairpin-helix, fidelity, processivity, transferase; 2.30A {Sulfolobus solfataricus} SCOP: e.8.1.7
Probab=45.32 E-value=9.3 Score=34.07 Aligned_cols=36 Identities=3% Similarity=0.231 Sum_probs=25.4
Q ss_pred CCccCCCCCCHHHHHHHhhcCCCCHHHHHcCCHHHH
Q 019342 47 APFLQLPHFTEAVIKKIARKKVRTFQELRDMSLQDR 82 (342)
Q Consensus 47 spLlQLPh~~~~~v~~l~~~~v~tl~~L~~m~~~er 82 (342)
-|+..||++...+.++|.+.+|+|+.+|..++...+
T Consensus 184 lpv~~l~giG~~~~~~L~~~Gi~TigdL~~~~~~~L 219 (221)
T 1im4_A 184 LDIDEIPGIGSVLARRLNELGIQKLRDILSKNYNEL 219 (221)
T ss_dssp CBGGGSTTCCHHHHHHHHHTTCCBTTC---------
T ss_pred CCcccccCCCHHHHHHHHHcCCCcHHHHHCCCHHHh
Confidence 589999999999999999999999999999886543
No 37
>3bqs_A Uncharacterized protein; 10114F, NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.42A {Listeria monocytogenes str} PDB: 3bqt_A 3mab_A
Probab=43.28 E-value=27 Score=27.15 Aligned_cols=42 Identities=17% Similarity=0.270 Sum_probs=34.8
Q ss_pred CCCccCCCCCCHHHHHHHhhcCCCCHHHHHcCCHHHHHHHHh
Q 019342 46 TAPFLQLPHFTEAVIKKIARKKVRTFQELRDMSLQDRAELLS 87 (342)
Q Consensus 46 ~spLlQLPh~~~~~v~~l~~~~v~tl~~L~~m~~~er~~lL~ 87 (342)
...|..||++.+.+.+.|.+-+|.|+.+|..+...+.-.-|.
T Consensus 3 ~~~L~~LPNiG~~~e~~L~~vGI~s~e~L~~~Ga~~ay~rL~ 44 (93)
T 3bqs_A 3 LANLSELPNIGKVLEQDLIKAGIKTPVELKDVGSKEAFLRIW 44 (93)
T ss_dssp CSCGGGSTTCCHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHH
T ss_pred hHHhhcCCCCCHHHHHHHHHcCCCCHHHHHhCCHHHHHHHHH
Confidence 467999999999999999999999999999988766543333
No 38
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=41.30 E-value=5.6 Score=37.53 Aligned_cols=54 Identities=17% Similarity=0.198 Sum_probs=0.0
Q ss_pred CccCCC--CCCHHHHHHHhhcCCCCHHHHHcCCHHHHHHHHhhccCCChHHHHHHHHHHh
Q 019342 48 PFLQLP--HFTEAVIKKIARKKVRTFQELRDMSLQDRAELLSQVGGFSSTEVQDVEMVLQ 105 (342)
Q Consensus 48 pLlQLP--h~~~~~v~~l~~~~v~tl~~L~~m~~~er~~lL~~~~~l~~~~~~~v~~v~~ 105 (342)
+|..|| ++++..+++|++.++.|+.+|+..++.++..+ .|++...+..+++.+.
T Consensus 26 ~~~~l~~~g~~~~~~~~l~~~g~~t~~~~~~~~~~~l~~~----~~is~~~~~~~~~~a~ 81 (343)
T 1v5w_A 26 DIDLLQKHGINVADIKKLKSVGICTIKGIQMTTRRALCNV----KGLSEAKVDKIKEAAN 81 (343)
T ss_dssp ------------------------------------------------------------
T ss_pred cHHHHhhCCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHHh----hCCCHHHHHHHHHHHH
Confidence 677888 89999999999889999999998887666544 3466665655555544
No 39
>2dkz_A Hypothetical protein LOC64762; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=38.91 E-value=70 Score=24.60 Aligned_cols=52 Identities=15% Similarity=0.144 Sum_probs=37.8
Q ss_pred CCCCCCHHHHHHHhhcCCCCHHHHHcCCHHHHHHHHhhccCCChHHHHHHHHHHhcC
Q 019342 51 QLPHFTEAVIKKIARKKVRTFQELRDMSLQDRAELLSQVGGFSSTEVQDVEMVLQMM 107 (342)
Q Consensus 51 QLPh~~~~~v~~l~~~~v~tl~~L~~m~~~er~~lL~~~~~l~~~~~~~v~~v~~~i 107 (342)
++=++.+.++..+++..| .=.-|+.|+++.+.+=| +++.-|.+.++++++-|
T Consensus 28 r~igL~e~vv~~F~~e~I-DG~lL~~L~ee~L~edf----~ls~Lq~kKi~~fI~GW 79 (84)
T 2dkz_A 28 RFIGLSEDVISFFVTEKI-DGNLLVQLTEEILSEDF----KLSKLQVKKIMQFINGS 79 (84)
T ss_dssp GGTCCCHHHHHHHHTTTC-CHHHHHHCCHHHHHHTS----CCCHHHHHHHHHHHHCC
T ss_pred HHcCCcHHHHHHHHHHcc-chHHHHhCCHHHHHhhc----CCCHHHHHHHHHHHhcC
Confidence 334566677777776665 56678889987766544 47888999999998765
No 40
>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A
Probab=36.62 E-value=35 Score=29.84 Aligned_cols=54 Identities=9% Similarity=0.266 Sum_probs=41.6
Q ss_pred CccCCCCCCHHHHHHHhhcCCCCHHHHHcCCHHHHHHHHhhccCCChHHHHHHHHHHhc
Q 019342 48 PFLQLPHFTEAVIKKIARKKVRTFQELRDMSLQDRAELLSQVGGFSSTEVQDVEMVLQM 106 (342)
Q Consensus 48 pLlQLPh~~~~~v~~l~~~~v~tl~~L~~m~~~er~~lL~~~~~l~~~~~~~v~~v~~~ 106 (342)
.|.++|++.+..++.|-+. ..++..+++.+.+++..+ .|+.+..++.+..+++.
T Consensus 163 ~L~~i~gVg~~~a~~Ll~~-fgs~~~l~~a~~e~L~~v----~GiG~~~a~~i~~~~~~ 216 (219)
T 2bgw_A 163 ILQSFPGIGRRTAERILER-FGSLERFFTASKAEISKV----EGIGEKRAEEIKKILMT 216 (219)
T ss_dssp HHHTSTTCCHHHHHHHHHH-HSSHHHHTTCCHHHHHHS----TTCCHHHHHHHHHHHHS
T ss_pred HHhcCCCCCHHHHHHHHHH-cCCHHHHHhCCHHHHhhC----CCCCHHHHHHHHHHHhc
Confidence 4678999999988888643 567999999888776543 56888888888887753
No 41
>2yrl_A KIAA1837 protein; PKD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.17 E-value=1.1e+02 Score=23.52 Aligned_cols=37 Identities=11% Similarity=0.205 Sum_probs=28.9
Q ss_pred EEEEcCCCCceeEEEEEEcCCCcccceEEEEEEEeeecC
Q 019342 230 GKIQAPAEGNYNLTCYCLCDSWLGCDKRTNLKVKILKRT 268 (342)
Q Consensus 230 l~F~aP~~G~~~l~l~viSDsYlG~D~~~~i~l~V~~~~ 268 (342)
+.|..|.+|.|.|+|.|--+. |.-..-.+.+.|....
T Consensus 61 ~~~t~~~~G~y~f~LTVtD~~--G~s~s~~v~VtV~~~~ 97 (102)
T 2yrl_A 61 ATVTGLQVGTYVFTLTVKDER--NLQSQSSVNVIVKEES 97 (102)
T ss_dssp EEEESCCSSEEEEEEEEEBTT--CCEEEEEEEEEEECCS
T ss_pred EEEECCCCeEEEEEEEEEeCC--CCEEEeEEEEEEcCCC
Confidence 678889999999999975543 7766777888887654
No 42
>3isy_A Bsupi, intracellular proteinase inhibitor; intracellular proteinase inhibitor bsupi, beta sandwich, GRE structural genomics; HET: PG4; 2.61A {Bacillus subtilis}
Probab=30.08 E-value=2.2e+02 Score=23.00 Aligned_cols=43 Identities=12% Similarity=0.149 Sum_probs=24.2
Q ss_pred CCCeEEEEEeeeeeccCCCCCCCccCCCCCCCCcccEEEEEEECCCCeEEE
Q 019342 126 EGDIVTIQAWVTLKRGNGLIGALPHAPYYPFHKEENFWFLLADSVSNNVWF 176 (342)
Q Consensus 126 ~g~~vtl~~~V~L~R~n~~~~~~~~aP~FP~~K~E~WwvllgD~~~n~Ll~ 176 (342)
.|+.+.+. ++++... ..+..=.|+-.+.--+ +|-|...++||.
T Consensus 16 ~g~~v~~~--ltv~N~s----~~~v~l~f~Sgq~~Df--~v~d~~G~~Vwr 58 (120)
T 3isy_A 16 EPEQIKFN--MSLKNQS----ERAIEFQFSTGQKFEL--VVYDSEHKERYR 58 (120)
T ss_dssp CSSCEEEE--EEEEECS----SSCEEEEESSSCCEEE--EEECTTCCEEEE
T ss_pred CCCeEEEE--EEEEcCC----CCcEEEEeCCCCEEEE--EEECCCCCEEEE
Confidence 45667777 6666321 1223334555555334 444888889984
No 43
>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A {Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A
Probab=29.35 E-value=11 Score=37.29 Aligned_cols=6 Identities=17% Similarity=0.805 Sum_probs=3.5
Q ss_pred CCCCCC
Q 019342 151 APYYPF 156 (342)
Q Consensus 151 aP~FP~ 156 (342)
.|||.-
T Consensus 240 NpYF~N 245 (417)
T 2ayu_A 240 NPFFTN 245 (417)
T ss_dssp CSSBCC
T ss_pred CccccC
Confidence 466654
No 44
>2wnv_B C1Q chain B, complement C1Q subcomponent subunit B; immune system, secreted, collagen, recognition, disulfide bond, innate immunity; HET: NAG; 1.25A {Homo sapiens} PDB: 2jg8_B 2wnu_B* 2jg9_B* 1pk6_B
Probab=29.04 E-value=41 Score=27.38 Aligned_cols=21 Identities=24% Similarity=0.330 Sum_probs=18.8
Q ss_pred EEEEcCCCCceeEEEEEEcCC
Q 019342 230 GKIQAPAEGNYNLTCYCLCDS 250 (342)
Q Consensus 230 l~F~aP~~G~~~l~l~viSDs 250 (342)
..|++|-+|.|.|...+++..
T Consensus 41 G~Ftap~~G~Y~Fs~~~~~~~ 61 (136)
T 2wnv_B 41 GKFTCKVPGLYYFTYHASSRG 61 (136)
T ss_dssp TEEECSSCEEEEEEEEEEESS
T ss_pred CEEECCcCeEEEEEEEEEECC
Confidence 479999999999999999874
No 45
>1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y* 1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y* 1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y* 1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ...
Probab=28.86 E-value=12 Score=34.23 Aligned_cols=57 Identities=5% Similarity=0.145 Sum_probs=0.0
Q ss_pred CCCCccCCCCCCHHHHHHHhhcCCCCHHHHHcCCHHHHHHHHhhccCCChHHHHHHHHHHh
Q 019342 45 GTAPFLQLPHFTEAVIKKIARKKVRTFQELRDMSLQDRAELLSQVGGFSSTEVQDVEMVLQ 105 (342)
Q Consensus 45 ~~spLlQLPh~~~~~v~~l~~~~v~tl~~L~~m~~~er~~lL~~~~~l~~~~~~~v~~v~~ 105 (342)
+.+.|.++|++.+..+..|-..++.++..|...+.+++..+ .|+.++..+.+...+.
T Consensus 13 ~~~~L~~IpGIGpk~a~~Ll~~gf~sve~L~~a~~~eL~~v----~GIG~ktAe~I~~~l~ 69 (241)
T 1vq8_Y 13 EYTELTDISGVGPSKAESLREAGFESVEDVRGADQSALADV----SGIGNALAARIKADVG 69 (241)
T ss_dssp -------------------------------------------------------------
T ss_pred chhHHhcCCCCCHHHHHHHHHcCCCCHHHHHhCCHHHHHhc----cCCCHHHHHHHHHHHH
Confidence 45799999999999888876556778888876666665554 3465555555544443
No 46
>2aq4_A DNA repair protein REV1; polymerase, PAD, N-digit, G-loop, transferase; HET: DNA DOC DCP; 2.32A {Saccharomyces cerevisiae} PDB: 3bjy_A* 3osp_A*
Probab=28.64 E-value=47 Score=32.34 Aligned_cols=42 Identities=12% Similarity=0.270 Sum_probs=36.2
Q ss_pred CCCccCCCCCCHHHHHHHhh--cCCCCHHHHHcC-CHHHHHHHHh
Q 019342 46 TAPFLQLPHFTEAVIKKIAR--KKVRTFQELRDM-SLQDRAELLS 87 (342)
Q Consensus 46 ~spLlQLPh~~~~~v~~l~~--~~v~tl~~L~~m-~~~er~~lL~ 87 (342)
.-|+..||++...+.++|.+ .+|.|+.+|..+ +...+...++
T Consensus 240 ~lpv~~l~GiG~~~~~~L~~~~~GI~ti~dL~~~~~~~~L~~~fG 284 (434)
T 2aq4_A 240 SFKLDDLPGVGHSTLSRLESTFDSPHSLNDLRKRYTLDALKASVG 284 (434)
T ss_dssp TCCGGGSTTCCHHHHHHHHHHTTCCCSHHHHHHHCCHHHHHHHHC
T ss_pred cCCcccccCcCHHHHHHHHHhcCCceEHHHHHhcCCHHHHHHHhC
Confidence 35888899999999999998 899999999999 8877766654
No 47
>2hr0_A Complement C3 beta chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2i07_A* 2wii_A* 2win_A* 2xwj_A* 3l3o_A* 3l5n_A* 3nms_A* 3nsa_A* 3ohx_A* 3t4a_A 2a74_A* 2a73_A* 2qki_A* 3g6j_A 2ice_A* 2icf_A* 2xwb_A*
Probab=27.13 E-value=4.6e+02 Score=26.30 Aligned_cols=44 Identities=11% Similarity=0.046 Sum_probs=26.3
Q ss_pred ccCCCeEEEEEeeeeeccCCCCCCCccCCCCCCCCcccEEEEEEECCCCeEEEEeeeec
Q 019342 124 IQEGDIVTIQAWVTLKRGNGLIGALPHAPYYPFHKEENFWFLLADSVSNNVWFSQKVSF 182 (342)
Q Consensus 124 It~g~~vtl~~~V~L~R~n~~~~~~~~aP~FP~~K~E~WwvllgD~~~n~Ll~~krv~~ 182 (342)
..||+.|++. +.+...+ +.| .. ..-.|.|.|++.++|.. +.+..
T Consensus 117 YrPGqtV~~r--~i~~d~~-------~~p---~~--~~v~v~l~dP~g~~i~~-~~~~~ 160 (645)
T 2hr0_A 117 YTPGSTVLYR--IFTVNHK-------LLP---VG--RTVMVNIENPEGIPVKQ-DSLSS 160 (645)
T ss_dssp CCTTSEEEEE--EEEECTT-------SCB---CC--CEEEEEEECTTSCEEEE-EEEEC
T ss_pred CCCCCEEEEE--EEEECCC-------Ccc---cC--ceEEEEEECCCCCEEEE-EEeec
Confidence 5888888877 6554211 122 11 23567888998888765 45543
No 48
>1skn_P DNA-binding domain of SKN-1; complex (transcription factor/DNA), transcription/DNA complex; HET: DNA LDA; 2.50A {Caenorhabditis elegans} SCOP: a.37.1.1
Probab=26.82 E-value=93 Score=24.23 Aligned_cols=34 Identities=18% Similarity=0.262 Sum_probs=28.2
Q ss_pred CCHHHHHcCCHHHHHHHHhhccCCChHHHHHHHHH
Q 019342 69 RTFQELRDMSLQDRAELLSQVGGFSSTEVQDVEMV 103 (342)
Q Consensus 69 ~tl~~L~~m~~~er~~lL~~~~~l~~~~~~~v~~v 103 (342)
.+..++.+|+.++...+|.. .+|++.|+..+..+
T Consensus 31 fs~~eIv~lpv~efn~lLk~-~~Ls~~Ql~~ir~~ 64 (92)
T 1skn_P 31 VSAFQISEMSLSELQQVLKN-ESLSEYQRQLIRKI 64 (92)
T ss_dssp SCHHHHHHSCHHHHHHHHHH-SCCCHHHHHHHHHH
T ss_pred CCHHHHHHCcHHHHHHHHHh-CCCCHHHHHHHHHH
Confidence 58999999999999999986 78999888765543
No 49
>2wnv_A C1Q chain A, complement C1Q subcomponent subunit A; immune system, secreted, collagen, recognition, disulfide bond, innate immunity; HET: NAG; 1.25A {Homo sapiens} PDB: 2jg8_A 2wnu_A* 2jg9_A* 1pk6_A
Probab=25.96 E-value=50 Score=26.69 Aligned_cols=20 Identities=25% Similarity=0.461 Sum_probs=18.2
Q ss_pred EEEEcCCCCceeEEEEEEcC
Q 019342 230 GKIQAPAEGNYNLTCYCLCD 249 (342)
Q Consensus 230 l~F~aP~~G~~~l~l~viSD 249 (342)
..|++|-+|.|.|...+++.
T Consensus 38 G~Ftap~~G~Y~Fs~~~~~~ 57 (134)
T 2wnv_A 38 GRFVCTVPGYYYFTFQVLSQ 57 (134)
T ss_dssp TEEECCSCEEEEEEEEEEES
T ss_pred CEEECeeCCEEEEEEEEEEC
Confidence 47999999999999999885
No 50
>1t94_A Polymerase (DNA directed) kappa; replication, DNA repair, Y-family DNA polymerase, translesion DNA synthesis, lesion bypass; 2.40A {Homo sapiens} SCOP: d.240.1.1 e.8.1.7 PDB: 2oh2_A* 2w7o_A* 2w7p_A* 3hed_A* 3in5_A*
Probab=23.72 E-value=1.5e+02 Score=28.95 Aligned_cols=58 Identities=17% Similarity=0.070 Sum_probs=43.2
Q ss_pred CCccCCCCCCHHHHHHHhhcCCCCHHHHHcCCHHHHHHHHhhccCCChHHHHHHHHHHhcCCcee
Q 019342 47 APFLQLPHFTEAVIKKIARKKVRTFQELRDMSLQDRAELLSQVGGFSSTEVQDVEMVLQMMPSLT 111 (342)
Q Consensus 47 spLlQLPh~~~~~v~~l~~~~v~tl~~L~~m~~~er~~lL~~~~~l~~~~~~~v~~v~~~iP~I~ 111 (342)
-|+.-||++.....++|.+.+|.|+.+|..++ ..+... |.......+++.+.-+..-.
T Consensus 282 lpv~~l~GiG~~~~~~L~~lGI~T~gdL~~~~-~~L~~~------fG~~~~~~l~~~a~G~d~~~ 339 (459)
T 1t94_A 282 LPIRKVSGIGKVTEKMLKALGIITCTELYQQR-ALLSLL------FSETSWHYFLHISLGLGSTH 339 (459)
T ss_dssp CBGGGCTTSCHHHHHHHHHTTCCBHHHHHHTH-HHHHHH------SCHHHHHHHHHHHTTCCCSC
T ss_pred CCHHhcCCcCHHHHHHHHHcCCCcHHHHHhhH-HHHHHH------hChHhHHHHHHHHcCCCCcc
Confidence 58999999999999999999999999999974 444433 44444566777777665543
No 51
>2r5o_A Putative ATP binding component of ABC- transporter; immunoglobulin fold, carbohydrate binding, domain swapping, O antigen export; HET: PG4; 1.30A {Escherichia coli}
Probab=23.72 E-value=95 Score=26.34 Aligned_cols=41 Identities=15% Similarity=0.190 Sum_probs=28.0
Q ss_pred eEEEEEEcC-CCCceeEEEEEEcCC-C---cccceEEE-EEEEeeec
Q 019342 227 LVMGKIQAP-AEGNYNLTCYCLCDS-W---LGCDKRTN-LKVKILKR 267 (342)
Q Consensus 227 ~v~l~F~aP-~~G~~~l~l~viSDs-Y---lG~D~~~~-i~l~V~~~ 267 (342)
.+.+.|..| .+|.|.+.+.|.+.. + .-+|+... +.|+|...
T Consensus 125 ~v~f~f~l~L~~G~Y~lsv~i~~~~~~~~~~~~d~~~da~~F~V~~~ 171 (188)
T 2r5o_A 125 VFKFSLPVDLNSGDYLLSFGISAGNPQTDMTPLDRRYDSIILHVTKS 171 (188)
T ss_dssp EEEEEEECCBCSEEEEEEEEEEEEETTTEEEEEEEEEEEEEEEEECS
T ss_pred EEEEEEecccCCCeEEEEEEEecCCcCCCcEEEEEEccEEEEEEecC
Confidence 455677777 699999999998765 2 11355544 67888543
No 52
>4ecq_A DNA polymerase ETA; transferase-DNA complex; HET: DNA DTP; 1.50A {Homo sapiens} PDB: 3mr2_A* 3mr4_A* 3mr5_A* 3si8_A* 4dl2_A* 4dl3_A* 4dl4_A* 4dl5_A* 4dl6_A* 4dl7_A* 3mr3_A* 4ecr_A* 4ecs_A* 4ect_A* 4ecu_A* 4ecv_A* 4ecw_A* 4ecx_A* 4ecy_A* 4ecz_A* ...
Probab=23.67 E-value=75 Score=30.97 Aligned_cols=56 Identities=7% Similarity=0.036 Sum_probs=41.8
Q ss_pred CCccCCCCCCHHHHHH-HhhcCCCCHHHHHcCCHHHHHHHHhhccCCChHHHHHHHHHHhcCC
Q 019342 47 APFLQLPHFTEAVIKK-IARKKVRTFQELRDMSLQDRAELLSQVGGFSSTEVQDVEMVLQMMP 108 (342)
Q Consensus 47 spLlQLPh~~~~~v~~-l~~~~v~tl~~L~~m~~~er~~lL~~~~~l~~~~~~~v~~v~~~iP 108 (342)
-|+..||++...+.++ |.+.+|.|+.+|..++...+...++ ......+...+.-+.
T Consensus 253 lpv~~l~GiG~~~~~~lL~~lGI~TigdLa~~~~~~L~~~fG------~~~g~~L~~~a~G~d 309 (435)
T 4ecq_A 253 MPIRKIRSLGGKLGASVIEILGIEYMGELTQFTESQLQSHFG------EKNGSWLYAMCRGIE 309 (435)
T ss_dssp CBGGGSTTCSSHHHHHHHHHHTCCBGGGGGGSCHHHHHHHHC------HHHHHHHHHHTTTCC
T ss_pred CCHHHhcCCCHHHHHHHHHHcCCCcHHHHhhCCHHHHHHHhC------ccHHHHHHHHhhCCC
Confidence 4788888998776555 6888999999999999888776654 234566666666554
No 53
>3arc_U Photosystem II 12 kDa extrinsic protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3bz1_U* 2axt_U* 3bz2_U* 3kzi_U* 3prq_U* 3prr_U* 3a0b_U* 3a0h_U*
Probab=22.06 E-value=74 Score=24.82 Aligned_cols=49 Identities=16% Similarity=0.268 Sum_probs=31.2
Q ss_pred CCCCccCCCCCCHHHHHHHh-hcCCCCHHHHHcCCHHHHHHHHhhccCCChHHHHHHHHHHh
Q 019342 45 GTAPFLQLPHFTEAVIKKIA-RKKVRTFQELRDMSLQDRAELLSQVGGFSSTEVQDVEMVLQ 105 (342)
Q Consensus 45 ~~spLlQLPh~~~~~v~~l~-~~~v~tl~~L~~m~~~er~~lL~~~~~l~~~~~~~v~~v~~ 105 (342)
+...|.+||++.+..+++|- ..+..++.+|..+ .|+.++.++.+...+.
T Consensus 24 s~~eL~~lpGIG~~~A~~IV~~GpF~s~edL~~V------------~Gig~~~~e~l~~~l~ 73 (97)
T 3arc_U 24 NIAAFIQYRGLYPTLAKLIVKNAPYESVEDVLNI------------PGLTERQKQILRENLE 73 (97)
T ss_dssp CGGGGGGSTTCTTHHHHHHHHHCCCSSGGGGGGC------------TTCCHHHHHHHHHTGG
T ss_pred CHHHHhHCCCCCHHHHHHHHHcCCCCCHHHHHhc------------cCCCHHHHHHHHHHhc
Confidence 45678899999988887774 3456677666544 3455555555544433
No 54
>2wnv_C C1Q chain C, complement C1Q subcomponent subunit C; immune system, secreted, collagen, recognition, disulfide bond, innate immunity; HET: NAG; 1.25A {Homo sapiens} PDB: 2jg8_C 2wnu_C* 2jg9_C* 1pk6_C
Probab=21.91 E-value=47 Score=26.78 Aligned_cols=21 Identities=19% Similarity=0.284 Sum_probs=18.6
Q ss_pred EEEEcCCCCceeEEEEEEcCC
Q 019342 230 GKIQAPAEGNYNLTCYCLCDS 250 (342)
Q Consensus 230 l~F~aP~~G~~~l~l~viSDs 250 (342)
..|++|.+|.|.|...+.+..
T Consensus 42 G~Ftap~~G~Y~Fs~~~~~~~ 62 (131)
T 2wnv_C 42 GKFTCKVPGLYYFVYHASHTA 62 (131)
T ss_dssp TEEECSSCEEEEEEEEEEESS
T ss_pred CEEEcccCCEEEEEEEEEECC
Confidence 479999999999999998864
No 55
>2zd7_A VPS75, vacuolar protein sorting-associated protein 75; histone chaperone, VPS75, NAP1, nucleus, phosphoprotein; 1.85A {Saccharomyces cerevisiae} PDB: 3q66_A* 3q68_A* 3c9d_A 3c9b_A 3q33_B* 3q35_B* 3dm7_A
Probab=21.63 E-value=19 Score=33.20 Aligned_cols=6 Identities=0% Similarity=-0.208 Sum_probs=3.8
Q ss_pred CCCCCC
Q 019342 151 APYYPF 156 (342)
Q Consensus 151 aP~FP~ 156 (342)
.|||.-
T Consensus 113 NpyF~N 118 (264)
T 2zd7_A 113 EGDFKE 118 (264)
T ss_dssp TTTBCC
T ss_pred CCCccC
Confidence 467764
No 56
>3c1y_A DNA integrity scanning protein DISA; DNA damage, DNA repair, DNA-binding, DNA binding protein; HET: DNA 2BA; 2.10A {Thermotoga maritima} PDB: 3c1z_A* 3c21_A* 3c23_A*
Probab=20.94 E-value=51 Score=32.05 Aligned_cols=55 Identities=9% Similarity=0.247 Sum_probs=43.6
Q ss_pred CccCCCCCCHHHHHHHhhcCCCCHHHHHcCCHHHHHHHHhhccCCChHHHHHHHHHHhcC
Q 019342 48 PFLQLPHFTEAVIKKIARKKVRTFQELRDMSLQDRAELLSQVGGFSSTEVQDVEMVLQMM 107 (342)
Q Consensus 48 pLlQLPh~~~~~v~~l~~~~v~tl~~L~~m~~~er~~lL~~~~~l~~~~~~~v~~v~~~i 107 (342)
-|..+|.+.+.++++|-.+ ..+++.+++.+.+++.++ .|+.+..++.|.+.+.++
T Consensus 316 iLs~IPrl~~~iae~Lv~~-FGsLq~Il~AS~eEL~~V----eGIGe~rAr~IregL~r~ 370 (377)
T 3c1y_A 316 LLKTVARIPLSIGYNVVRM-FKTLDQISKASVEDLKKV----EGIGEKRARAISESISSL 370 (377)
T ss_dssp HHHHTSCCCHHHHHHHHHH-HCSHHHHTTCCHHHHTTS----TTCCHHHHHHHHHHHHHH
T ss_pred HHhhCCCCCHHHHHHHHHH-hCCHHHHHhCCHHHHHhc----cCccHHHHHHHHHHHHHH
Confidence 3556999999999988643 579999999999987654 568888888888877654
No 57
>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens}
Probab=20.47 E-value=3.6e+02 Score=30.51 Aligned_cols=18 Identities=17% Similarity=0.121 Sum_probs=13.2
Q ss_pred EEEEEECCCCeEEEEeee
Q 019342 163 WFLLADSVSNNVWFSQKV 180 (342)
Q Consensus 163 wvllgD~~~n~Ll~~krv 180 (342)
-|.|.|++.++|..+..+
T Consensus 141 ~v~i~dp~g~~i~~~~~~ 158 (1451)
T 4acq_A 141 LVYIQDPKGNRIAQWQSF 158 (1451)
T ss_dssp EEEEECTTSCEEEEEEEE
T ss_pred EEEEECCCCCEEEEeeec
Confidence 367789999988865444
No 58
>2kz5_A Transcription factor NF-E2 45 kDa subunit; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=20.42 E-value=1.5e+02 Score=23.06 Aligned_cols=34 Identities=15% Similarity=0.236 Sum_probs=28.5
Q ss_pred CCHHHHHcCCHHHHHHHHhhccCCChHHHHHHHHH
Q 019342 69 RTFQELRDMSLQDRAELLSQVGGFSSTEVQDVEMV 103 (342)
Q Consensus 69 ~tl~~L~~m~~~er~~lL~~~~~l~~~~~~~v~~v 103 (342)
.+..++.+|+.++...+|.. .+|++.|+.-|..+
T Consensus 35 fs~~~Iv~lpv~efn~ll~~-~~Ls~~Ql~lIrdi 68 (91)
T 2kz5_A 35 FPTDKIVNLPVDDFNELLAR-YPLTESQLALVRDI 68 (91)
T ss_dssp SCHHHHHHSCHHHHHHHHHH-SCCCHHHHHHHHHH
T ss_pred CCHHHHHHCcHHHHHHHHHH-cCCCHHHHHHHHHH
Confidence 58999999999999999987 78999887766543
Done!