BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019343
(342 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2OJU|A Chain A, X-Ray Structure Of Complex Of Human Cyclophilin J With
Cyclosporin A
pdb|2OJU|B Chain B, X-Ray Structure Of Complex Of Human Cyclophilin J With
Cyclosporin A
Length = 167
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 68/155 (43%), Gaps = 17/155 (10%)
Query: 163 VGLETEYGTLHIKLFPECAPHSVAYILELLSLRHCAGCQFHRAESRGQSWDIEGNHIKNA 222
V L T+ G + I++F E P + L L + + GC FHR +I+G ++
Sbjct: 9 VTLHTDVGDIKIEVFCERTPKTCENFLALCASNYYNGCIFHR--------NIKGFMVQT- 59
Query: 223 PYGPPFGLIQGTLEALGTAFKKIPREVCPSIRRGSVAWIGSGP-----EFFISLSNHEEW 277
G P G +G G F+ E RG V+ +GP +FFI+
Sbjct: 60 --GDPTGTGRGGNSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHL 117
Query: 278 KNSYTVFGSVLPQNMEIVEKIAQLPTKSDVWNNIN 312
YTVFG V+ +E ++++ +LP + +N
Sbjct: 118 DMKYTVFGKVI-DGLETLDELEKLPVNEKTYRPLN 151
>pdb|1XYH|A Chain A, Crystal Structure Of Recombinant Human Cyclophilin J
pdb|2OK3|A Chain A, X-Ray Structure Of Human Cyclophilin J At 2.0 Angstrom
Length = 161
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 68/155 (43%), Gaps = 17/155 (10%)
Query: 163 VGLETEYGTLHIKLFPECAPHSVAYILELLSLRHCAGCQFHRAESRGQSWDIEGNHIKNA 222
V L T+ G + I++F E P + L L + + GC FHR +I+G ++
Sbjct: 3 VTLHTDVGDIKIEVFCERTPKTCENFLALCASNYYNGCIFHR--------NIKGFMVQT- 53
Query: 223 PYGPPFGLIQGTLEALGTAFKKIPREVCPSIRRGSVAWIGSGP-----EFFISLSNHEEW 277
G P G +G G F+ E RG V+ +GP +FFI+
Sbjct: 54 --GDPTGTGRGGNSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHL 111
Query: 278 KNSYTVFGSVLPQNMEIVEKIAQLPTKSDVWNNIN 312
YTVFG V+ +E ++++ +LP + +N
Sbjct: 112 DMKYTVFGKVI-DGLETLDELEKLPVNEKTYRPLN 145
>pdb|2X7K|A Chain A, The Crystal Structure Of Ppil1 In Complex With
Cyclosporine A Suggests A Binding Mode For Skip
Length = 166
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 69/151 (45%), Gaps = 23/151 (15%)
Query: 163 VGLETEYGTLHIKLFPECAPHSVAYILELLSLRHCAGCQFHRAESRGQSWDIEGNHIKNA 222
V LET G + ++L+ + AP + EL + G +FHR + + I+G
Sbjct: 14 VYLETSMGIIVLELYWKHAPKTCKNFAELARRGYYNGTKFHRII---KDFMIQG------ 64
Query: 223 PYGPPFGLIQGTLEALGTAFKKIPREVCPSIR---RGSVAWIGSGPE-----FFISLSNH 274
G P G +G G F+ E+ P ++ G +A +GP+ FF++L+
Sbjct: 65 --GDPTGTGRGGASIYGKQFED---ELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPT 119
Query: 275 EEWKNSYTVFGSVLPQNMEIVEKIAQLPTKS 305
+ +T+FG V Q + +V ++ + T S
Sbjct: 120 QWLDGKHTIFGRVC-QGIGMVNRVGMVETNS 149
>pdb|1XWN|A Chain A, Solution Structure Of Cyclophilin Like 1(Ppil1) And
Insights Into Its Interaction With Skip
Length = 174
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 69/151 (45%), Gaps = 23/151 (15%)
Query: 163 VGLETEYGTLHIKLFPECAPHSVAYILELLSLRHCAGCQFHRAESRGQSWDIEGNHIKNA 222
V LET G + ++L+ + AP + EL + G +FHR + + I+G
Sbjct: 14 VYLETSMGIIVLELYWKHAPKTCKNFAELARRGYYNGTKFHRII---KDFMIQG------ 64
Query: 223 PYGPPFGLIQGTLEALGTAFKKIPREVCPSIR---RGSVAWIGSGPE-----FFISLSNH 274
G P G +G G F+ E+ P ++ G +A +GP+ FF++L+
Sbjct: 65 --GDPTGTGRGGASIYGKQFED---ELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPT 119
Query: 275 EEWKNSYTVFGSVLPQNMEIVEKIAQLPTKS 305
+ +T+FG V Q + +V ++ + T S
Sbjct: 120 QWLDGKHTIFGRVC-QGIGMVNRVGMVETNS 149
>pdb|2K7N|A Chain A, Solution Structure Of The Ppil1 Bound To A Fragment Of
Skip
Length = 203
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 69/151 (45%), Gaps = 23/151 (15%)
Query: 163 VGLETEYGTLHIKLFPECAPHSVAYILELLSLRHCAGCQFHRAESRGQSWDIEGNHIKNA 222
V LET G + ++L+ + AP + EL + G +FHR + + I+G
Sbjct: 14 VYLETSMGIIVLELYWKHAPKTCKNFAELARRGYYNGTKFHRII---KDFMIQG------ 64
Query: 223 PYGPPFGLIQGTLEALGTAFKKIPREVCPSIR---RGSVAWIGSGPE-----FFISLSNH 274
G P G +G G F+ E+ P ++ G +A +GP+ FF++L+
Sbjct: 65 --GDPTGTGRGGASIYGKQFED---ELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPT 119
Query: 275 EEWKNSYTVFGSVLPQNMEIVEKIAQLPTKS 305
+ +T+FG V Q + +V ++ + T S
Sbjct: 120 QWLDGKHTIFGRVC-QGIGMVNRVGMVETNS 149
>pdb|2HQ6|A Chain A, Structure Of The Cyclophilin_cecyp16-like Domain Of The
Serologically Defined Colon Cancer Antigen 10 From Homo
Sapiens
Length = 185
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 62/152 (40%), Gaps = 16/152 (10%)
Query: 160 QGIVGLETEYGTLHIKLFPECAPHSVAYILELLSLRHCAGCQFHRAESRGQSWDIEGNHI 219
G V L+T G + I+L+ + AP + ++L + FHR + ++G
Sbjct: 24 NGKVLLKTTAGDIDIELWSKEAPKACRNFIQLCLEAYYDNTIFHRVVP---GFIVQG--- 77
Query: 220 KNAPYGPPFGLIQGTLEALGTAFKKIPREVCPSIRRGSVAWIGSGP-----EFFISLSNH 274
G P G G G FK RRG VA +G +FF +L
Sbjct: 78 -----GDPTGTGSGGESIYGAPFKDEFHSRLRFNRRGLVAMANAGSHDNGSQFFFTLGRA 132
Query: 275 EEWKNSYTVFGSVLPQNMEIVEKIAQLPTKSD 306
+E N +T+FG V + + +++++ D
Sbjct: 133 DELNNKHTIFGKVTGDTVYNMLRLSEVDIDDD 164
>pdb|3T1U|A Chain A, Crystal Structure Of The Complex Of Cyclophilin-a Enzyme
From Azotobacter Vinelandii With Sucafpfpna Peptide
Length = 163
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 69/160 (43%), Gaps = 35/160 (21%)
Query: 163 VGLETEYGTLHIKLFPECAPHSVAYILELLSLRHCAGCQFHRAESRGQSWDIEGNHIKNA 222
+ L+T +GT+ +KLF + AP + A + + H G FHR I+G I+
Sbjct: 2 IKLQTNHGTITLKLFADKAPETAANFEQYVKDGHYDGTIFHRV--------IDGFMIQGG 53
Query: 223 PYGPPFGLIQGTLEAL-------GTAFKK--IPREVCPSIRRGSVAWIGSGPEFFISLSN 273
+ P G+ Q + A G + KK I P S +FFI++ +
Sbjct: 54 GFEP--GMKQKSTRAPIKNEANNGLSNKKYTIAMARTPDPHSASA-------QFFINVKD 104
Query: 274 HEEWKNS--------YTVFGSVLPQNMEIVEKIAQLPTKS 305
+ ++ Y VFG V+ + ++V++I + T S
Sbjct: 105 NAFLDHTAPTAHGWGYAVFGEVV-EGTDVVDRIKSVATGS 143
>pdb|2A2N|A Chain A, Crystal Structure Of The Peptidylprolyl Isomerase Domain
Of Human Ppwd1
pdb|2A2N|B Chain B, Crystal Structure Of The Peptidylprolyl Isomerase Domain
Of Human Ppwd1
pdb|2A2N|C Chain C, Crystal Structure Of The Peptidylprolyl Isomerase Domain
Of Human Ppwd1
Length = 176
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 62/145 (42%), Gaps = 23/145 (15%)
Query: 165 LETEYGTLHIKLFPECAPHSVAYILELLSLRHCAGCQFHRAESRGQSWDIEGNHIKNAPY 224
+ T G +H KLFP P +V + G FHR I+G I+
Sbjct: 26 IHTSMGDIHTKLFPVECPKTVENFCVHSRNGYYNGHTFHRI--------IKGFMIQT--- 74
Query: 225 GPPFGLIQGTLEALGTAFKKIPREVCPSIRRG-----SVAWIGS---GPEFFISLSNHEE 276
G P G G G F+ E ++R S+A GS G +FFI++
Sbjct: 75 GDPTGTGMGGESIWGGEFED---EFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPW 131
Query: 277 WKNSYTVFGSVLPQNMEIVEKIAQL 301
N +TVFG V + ME+V++I+ +
Sbjct: 132 LDNKHTVFGRVT-KGMEVVQRISNV 155
>pdb|3BO7|A Chain A, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
pdb|3BO7|B Chain B, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
pdb|3BO7|C Chain C, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
pdb|3BO7|D Chain D, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
Length = 201
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 59/149 (39%), Gaps = 30/149 (20%)
Query: 158 KGQGIVGLETEYGTLHIKLFPECAPHSVAYILELLSLRHCAGCQFH-----------RAE 206
K +G + + T G+L+I+L + AP + L L ++++ FH RAE
Sbjct: 4 KKKGYLRIVTTQGSLNIELHADMAPRACDSFLRLCAVKYFDDTIFHRCIRNFMIQGGRAE 63
Query: 207 SRGQSWDIEGNH----IKNAPYGPPFGLIQGTLEALGTAFKKIPREVCPSIRRGSVAWIG 262
R S E I P G PF F R V I S+A G
Sbjct: 64 LRQPSKKKEVQQSPRSISGFPGGAPF----------EDEFDN--RLVHQGIGVLSMANDG 111
Query: 263 SG---PEFFISLSNHEEWKNSYTVFGSVL 288
EFFI+ + E N +T+FG V+
Sbjct: 112 KHSNLSEFFITFKSCEHLNNKHTIFGRVV 140
>pdb|1CLH|A Chain A, Three-Dimensional Solution Structure Of Escherichia Coli
Periplasmic Cyclophilin
Length = 166
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 68/164 (41%), Gaps = 38/164 (23%)
Query: 157 GKGQGIVGLETEYGTLHIKLFPECAPHSVAYILELLSLRHCAGCQFHRAESRGQSWDIEG 216
KG V L T G + ++L + AP SV ++ ++ FHR + I+G
Sbjct: 1 AKGDPHVLLTTSAGNIELELDKQKAPVSVQNFVDYVNSGFYNNTTFHRVIP---GFMIQG 57
Query: 217 ----NHIKNAPYGPPFGLIQGTLEALGTAFKKIPREVCPSIR--RGSVAWIGSG------ 264
++ PP I E +R RG++A +
Sbjct: 58 GGFTEQMQQKKPNPP-----------------IKNEADNGLRNTRGTIAMARTADKDSAT 100
Query: 265 PEFFISLSN-----HEEWKNSYTVFGSVLPQNMEIVEKIAQLPT 303
+FFI++++ H + Y VFG V+ + M++ +KI+Q+PT
Sbjct: 101 SQFFINVADNAFLDHGQRDFGYAVFGKVV-KGMDVADKISQVPT 143
>pdb|1J2A|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant
pdb|1V9T|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
Succinyl-Ala- Pro-Ala-P-Nitroanilide
pdb|1V9T|B Chain B, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
Succinyl-Ala- Pro-Ala-P-Nitroanilide
pdb|1VAI|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
N- Acetyl-Ala-Ala-Pro-Ala-7-Amino-4-Methylcoumarin
pdb|1VAI|B Chain B, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
N- Acetyl-Ala-Ala-Pro-Ala-7-Amino-4-Methylcoumarin
Length = 166
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 68/164 (41%), Gaps = 38/164 (23%)
Query: 157 GKGQGIVGLETEYGTLHIKLFPECAPHSVAYILELLSLRHCAGCQFHRAESRGQSWDIEG 216
KG V L T G + ++L + AP SV ++ ++ FHR + I+G
Sbjct: 1 AKGDPHVLLTTSAGNIELELDKQKAPVSVQNFVDYVNSGFYNNTTFHRVIP---GFMIQG 57
Query: 217 ----NHIKNAPYGPPFGLIQGTLEALGTAFKKIPREVCPSIR--RGSVAWIGSG------ 264
++ PP I E +R RG++A +
Sbjct: 58 GGFTEQMQQKKPNPP-----------------IKNEADNGLRNTRGTIAMARTADKDSAT 100
Query: 265 PEFFISLSN-----HEEWKNSYTVFGSVLPQNMEIVEKIAQLPT 303
+FFI++++ H + Y VFG V+ + M++ +KI+Q+PT
Sbjct: 101 SQFFINVADNAFLDHGQRDFGYAVFGKVV-KGMDVADKISQVPT 143
>pdb|2POE|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin
Type Peptidyl-Prolyl Cis-Trans Isomerase Cgd2_1660
pdb|2QER|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin
Type Peptidyl- Prolyl Cis-Trans Isomerase Cgd2_1660 In
The Presence Of Dipeptide Ala-Pro
Length = 185
Score = 32.0 bits (71), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 58/138 (42%), Gaps = 26/138 (18%)
Query: 163 VGLETEYGTLHIKLFPECAPHSVAYILELLSLRHCAGCQFHRAESRGQSWDIEGNHIKNA 222
V + T YG L +LF P + L L + + FH+ +I+G I+
Sbjct: 19 VRIITNYGDLKFELFCSQCPKACKNFLALSASGYYKNTIFHK--------NIKGFIIQG- 69
Query: 223 PYGPPFGLIQGTLEALGTAFKKIPREVCPSI---RRG--SVAWIGS-------GPEFFIS 270
G P G +G G F E+ P + RRG S+A G+ G +FFI+
Sbjct: 70 --GDPTGTGKGGESIYGRYFDD---EIYPELKYDRRGILSMASKGASKKPNTNGSQFFIT 124
Query: 271 LSNHEEWKNSYTVFGSVL 288
S+ + Y +FG ++
Sbjct: 125 YSSLPQLNGEYVIFGKLI 142
>pdb|3K2C|A Chain A, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
pdb|3K2C|B Chain B, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
pdb|3K2C|C Chain C, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
pdb|3K2C|D Chain D, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
Length = 193
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 263 SGPEFFISLSNHEEWKNSYTVFGSVLPQNMEIVEKIAQLPTKS 305
+G +FFI+L + + VFG V+ + M++V KIA+ ++S
Sbjct: 132 NGSQFFITLGKTQWLDEKHVVFGEVV-EGMDVVHKIAKYGSES 173
>pdb|3FZ4|A Chain A, The Crystal Structure Of A Possible Arsenate Reductase
From Streptococcus Mutans Ua159
Length = 120
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Query: 197 CAGCQFHRAESRGQSWDIEGNHIKNAPYGPPFGLIQGTLEALGTAFKK 244
C+ C+ +AE +WD + IK P P LI+ LE G KK
Sbjct: 13 CSTCRRAKAELDDLAWDYDAIDIKKNP--PAASLIRNWLENSGLELKK 58
>pdb|3BKP|A Chain A, Crystal Structure Of The Toxoplasma Gondii Cyclophilin,
49.m03261
Length = 232
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 263 SGPEFFISLSNHEEWKNSYTVFGSVLPQNMEIVEKIAQL 301
+G +FFI+L+ + N+YT+FG V + + K L
Sbjct: 134 NGNQFFITLARADVLNNAYTLFGKVTGHTLYNLMKFNDL 172
>pdb|1C5F|A Chain A, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|C Chain C, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|E Chain E, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|G Chain G, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|I Chain I, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|K Chain K, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|M Chain M, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|O Chain O, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1A33|A Chain A, Peptidylprolyl Isomerase, Cyclophilin-Like Domain From
Brugia Malayi
pdb|1A58|A Chain A, Cyclophilin From Brugia Malayi
Length = 177
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 263 SGPEFFISLSNHEEWKNSYTVFGSVLPQNMEIVEKIAQLPTKS 305
+G +FFI+ + N + VFG V+ E+V KI L T S
Sbjct: 119 NGSQFFITTTPAPHLNNIHVVFGKVV-SGQEVVTKIEYLKTNS 160
>pdb|4DF0|A Chain A, Crystal Structure Of Orotidine 5'-monophosphate
Decarboxylase From Thermoproteus Neutrophilus
pdb|4DF0|B Chain B, Crystal Structure Of Orotidine 5'-monophosphate
Decarboxylase From Thermoproteus Neutrophilus
pdb|4DF1|A Chain A, Crystal Structure Of Orotidine 5'-monophosphate
Decarboxylase From Thermoproteus Neutrophilus Complexed
With Inhibitor Bmp
pdb|4DF1|B Chain B, Crystal Structure Of Orotidine 5'-monophosphate
Decarboxylase From Thermoproteus Neutrophilus Complexed
With Inhibitor Bmp
Length = 202
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 144 AGQKVMWTSGLIFGKGQGIVGLETEYGTLHIKLFPECAPHSVAYILELLSLR 195
AG KV W LIF G IVG YG + + L PH + ++E L R
Sbjct: 30 AGFKVGWD--LIFEGGISIVGEIARYGNVIVDLKIADVPHVASRVVEKLVNR 79
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.455
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,309,168
Number of Sequences: 62578
Number of extensions: 440471
Number of successful extensions: 738
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 723
Number of HSP's gapped (non-prelim): 21
length of query: 342
length of database: 14,973,337
effective HSP length: 100
effective length of query: 242
effective length of database: 8,715,537
effective search space: 2109159954
effective search space used: 2109159954
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)