Query 019343
Match_columns 342
No_of_seqs 185 out of 1350
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 08:41:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019343.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019343hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0652 PpiB Peptidyl-prolyl c 100.0 3.8E-35 8.1E-40 258.7 15.6 143 163-327 2-156 (158)
2 cd01928 Cyclophilin_PPIL3_like 100.0 8.8E-35 1.9E-39 255.4 17.3 144 161-325 1-151 (153)
3 cd01923 cyclophilin_RING cyclo 100.0 3E-34 6.4E-39 253.5 17.1 145 163-328 2-153 (159)
4 cd01927 cyclophilin_WD40 cyclo 100.0 4.5E-34 9.8E-39 249.6 15.4 140 164-324 1-147 (148)
5 cd01922 cyclophilin_SpCYP2_lik 100.0 9.4E-34 2E-38 247.1 15.2 138 164-323 1-145 (146)
6 KOG0881 Cyclophilin type pepti 100.0 9.4E-35 2E-39 245.0 7.1 143 161-317 10-159 (164)
7 cd01921 cyclophilin_RRM cyclop 100.0 4.4E-33 9.5E-38 247.5 15.8 150 164-327 1-158 (166)
8 cd01925 cyclophilin_CeCYP16-li 100.0 1.2E-32 2.6E-37 246.0 17.7 152 158-329 3-161 (171)
9 PRK10903 peptidyl-prolyl cis-t 100.0 7.6E-32 1.7E-36 244.8 17.3 150 158-327 26-188 (190)
10 KOG0884 Similar to cyclophilin 100.0 3.3E-32 7.2E-37 228.4 9.8 136 161-308 1-141 (161)
11 cd01920 cyclophilin_EcCYP_like 100.0 3.6E-31 7.8E-36 232.9 15.1 138 165-324 2-154 (155)
12 PRK10791 peptidyl-prolyl cis-t 100.0 9.6E-31 2.1E-35 232.5 16.6 145 163-327 2-162 (164)
13 KOG0883 Cyclophilin type, U bo 100.0 1.8E-31 3.8E-36 259.1 12.0 144 160-324 277-427 (518)
14 KOG0546 HSP90 co-chaperone CPR 100.0 4.3E-31 9.4E-36 255.6 12.2 144 160-324 8-174 (372)
15 cd00317 cyclophilin cyclophili 100.0 3.8E-30 8.3E-35 222.2 15.5 135 164-323 1-145 (146)
16 PLN03149 peptidyl-prolyl isome 100.0 9.2E-30 2E-34 230.4 17.4 144 161-324 19-182 (186)
17 KOG0882 Cyclophilin-related pe 100.0 1.2E-30 2.7E-35 257.2 11.5 145 162-327 406-557 (558)
18 cd01926 cyclophilin_ABH_like c 100.0 1.2E-29 2.7E-34 224.9 15.3 135 167-323 12-161 (164)
19 KOG0880 Peptidyl-prolyl cis-tr 100.0 6.3E-30 1.4E-34 229.8 13.4 137 167-324 51-198 (217)
20 PTZ00221 cyclophilin; Provisio 100.0 3.2E-29 6.9E-34 235.6 17.3 145 158-327 50-218 (249)
21 KOG0885 Peptidyl-prolyl cis-tr 100.0 1.1E-29 2.4E-34 245.6 12.2 149 149-310 1-156 (439)
22 PF00160 Pro_isomerase: Cyclop 100.0 8.1E-29 1.8E-33 215.7 16.4 140 163-326 2-154 (155)
23 PTZ00060 cyclophilin; Provisio 100.0 7.6E-29 1.7E-33 223.8 16.8 137 167-325 27-179 (183)
24 KOG0415 Predicted peptidyl pro 100.0 2.6E-28 5.6E-33 234.9 12.1 135 161-309 1-150 (479)
25 cd01924 cyclophilin_TLP40_like 100.0 9E-28 1.9E-32 215.7 12.9 135 166-301 3-165 (176)
26 KOG0879 U-snRNP-associated cyc 99.9 1E-27 2.3E-32 204.4 11.1 145 159-324 9-173 (177)
27 KOG0111 Cyclophilin-type pepti 99.9 9.6E-25 2.1E-29 199.5 9.9 126 167-306 148-283 (298)
28 KOG0865 Cyclophilin type pepti 99.7 8.1E-17 1.7E-21 143.5 6.6 125 167-305 15-152 (167)
29 PF14295 PAN_4: PAN domain; PD 98.2 9.7E-07 2.1E-11 62.4 2.2 51 71-131 1-51 (51)
30 TIGR03268 methan_mark_3 putati 96.7 0.0051 1.1E-07 63.3 7.8 96 171-301 202-304 (503)
31 PRK00969 hypothetical protein; 96.6 0.0054 1.2E-07 63.3 7.5 94 172-300 206-306 (508)
32 cd01100 APPLE_Factor_XI_like S 95.1 0.034 7.4E-07 42.5 4.2 57 64-137 4-61 (73)
33 KOG0882 Cyclophilin-related pe 94.9 0.033 7.1E-07 57.0 4.8 154 152-324 90-258 (558)
34 COG4070 Predicted peptidyl-pro 94.5 0.059 1.3E-06 54.3 5.3 96 171-301 204-306 (512)
35 TIGR03268 methan_mark_3 putati 94.4 0.21 4.6E-06 51.7 9.0 26 170-195 375-400 (503)
36 COG4070 Predicted peptidyl-pro 93.8 0.14 3E-06 51.7 6.3 24 171-194 377-400 (512)
37 smart00223 APPLE APPLE domain. 91.6 0.33 7.2E-06 38.3 4.6 53 68-134 6-58 (79)
38 PF12903 DUF3830: Protein of u 90.3 0.31 6.6E-06 43.1 3.5 24 169-192 7-30 (147)
39 PRK00969 hypothetical protein; 88.5 3.1 6.7E-05 43.5 9.7 117 159-306 49-173 (508)
40 PF04126 Cyclophil_like: Cyclo 87.8 2.9 6.3E-05 35.4 7.7 100 161-300 1-113 (120)
41 COG2164 Uncharacterized conser 65.4 5 0.00011 33.7 2.3 109 160-302 3-119 (126)
42 PF06716 DUF1201: Protein of u 47.6 29 0.00064 25.0 3.4 29 25-53 21-52 (54)
43 PF03032 Brevenin: Brevenin/es 41.6 15 0.00032 26.3 1.1 15 15-29 6-20 (46)
44 PF00024 PAN_1: PAN domain Thi 37.2 36 0.00078 25.0 2.8 54 68-137 7-60 (79)
45 PF05913 DUF871: Bacterial pro 31.7 34 0.00073 34.5 2.4 48 252-300 297-349 (357)
46 PF10981 DUF2788: Protein of u 29.0 57 0.0012 24.0 2.5 25 2-26 17-41 (52)
47 PF12273 RCR: Chitin synthesis 28.8 40 0.00087 28.6 2.1 12 194-205 75-87 (130)
48 PHA03001 putative virion core 22.6 2E+02 0.0043 25.1 5.1 47 162-208 5-60 (132)
49 PF06138 Chordopox_E11: Chordo 22.5 2.1E+02 0.0045 24.9 5.1 46 162-207 5-60 (130)
50 PF12575 DUF3753: Protein of u 21.7 1.4E+02 0.003 23.5 3.6 32 4-35 39-70 (72)
51 cd01751 PLAT_LH2 PLAT/ LH2 dom 20.5 33 0.00071 30.0 -0.1 11 107-117 116-126 (137)
No 1
>COG0652 PpiB Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.8e-35 Score=258.72 Aligned_cols=143 Identities=31% Similarity=0.457 Sum_probs=118.8
Q ss_pred EEEEEeceeEEEEECCCCChHHHHHHHHHhhCCCcCCceeeEeeeC--CcccCCCCCccCCCCCCCCccccccccccCCC
Q 019343 163 VGLETEYGTLHIKLFPECAPHSVAYILELLSLRHCAGCQFHRAESR--GQSWDIEGNHIKNAPYGPPFGLIQGTLEALGT 240 (342)
Q Consensus 163 V~l~T~~G~I~IeL~~d~AP~tv~nFl~L~~~g~Ydg~~F~Rv~~~--~q~GD~~g~~i~~~q~G~p~~~iqGg~~~~g~ 240 (342)
+.++|+.|+|+|+||++.||+||+||++||+.+||+|+.||||+++ +|+||+.+. .++||. +.
T Consensus 2 v~~~t~~G~I~ieL~~~~aP~Tv~NF~~l~~~g~Ydg~~FHRVi~~FmiQgGd~~~~------------~g~gg~---~~ 66 (158)
T COG0652 2 VILETNKGDITIELYPDKAPKTVANFLQLVKEGFYDGTIFHRVIPGFMIQGGDPTGG------------DGTGGP---GP 66 (158)
T ss_pred ceeeccCCCEEEEECCCcCcHHHHHHHHHHHcCCCCCceEEEeecCceeecCCCCCC------------CCCCCC---CC
Confidence 6899999999999999999999999999999999999999999998 888888864 123332 23
Q ss_pred ccCCCCCCCC--CCC--CCcEEEEeCCC------CcEEEEcCCCCCCCCCceEEEEEEcccHHHHHHHhcCCCCCCCcCc
Q 019343 241 AFKKIPREVC--PSI--RRGSVAWIGSG------PEFFISLSNHEEWKNSYTVFGSVLPQNMEIVEKIAQLPTKSDVWNN 310 (342)
Q Consensus 241 ~~~~ip~E~~--~~~--~rG~Vsma~sG------sqFFItL~d~p~Ldg~~TVFG~Vv~eGmdVldkI~~~~td~~~~~~ 310 (342)
.+++|.. .++ .+|+|||||+| |||||++.++|+||++|+|||+|+ +|||+|++|++.++.....
T Consensus 67 ---~f~~E~~~~~~~~~~~G~lsMA~~g~P~t~~SQFFI~~~~~~~Ld~~ytVFG~Vv-~GmdvvdkI~~~~~~~~~~-- 140 (158)
T COG0652 67 ---PFKDENFALNGDRHKRGTLSMARAGDPNSNGSQFFITVVDNPFLDGKYTVFGQVV-EGMDVVDKIKNGDTDDSGY-- 140 (158)
T ss_pred ---CCcccccccccccCCcceEeEcccCCcCCccCeEEEEecCCcccCCCCcEEEEEe-hhHHHHHHHHcCCccCCCc--
Confidence 3455643 344 49999999965 799999999999999999999999 9999999999999887653
Q ss_pred cccccccCCeEEEEEec
Q 019343 311 INVTVLKKPVPLRLRRL 327 (342)
Q Consensus 311 i~v~v~~~PV~i~~~r~ 327 (342)
...++..|+.|...++
T Consensus 141 -~~~~~~~~~~i~~~~~ 156 (158)
T COG0652 141 -VQDVPADPVKILSVKI 156 (158)
T ss_pred -ccCCCCCCeEEeeeee
Confidence 2235678888877554
No 2
>cd01928 Cyclophilin_PPIL3_like Cyclophilin_PPIL3_like. Proteins similar to Human cyclophilin-like peptidylprolyl cis- trans isomerase (PPIL3). Members of this family lack a key residue important for cyclosporin binding: the tryptophan residue corresponding to W121 in human hCyP-18a; most members have a histidine at this position. The exact function of the protein is not known.
Probab=100.00 E-value=8.8e-35 Score=255.45 Aligned_cols=144 Identities=27% Similarity=0.429 Sum_probs=120.4
Q ss_pred cEEEEEEeceeEEEEECCCCChHHHHHHHHHhhCCCcCCceeeEeeeC--CcccCCCCCccCCCCCCCCccccccccccC
Q 019343 161 GIVGLETEYGTLHIKLFPECAPHSVAYILELLSLRHCAGCQFHRAESR--GQSWDIEGNHIKNAPYGPPFGLIQGTLEAL 238 (342)
Q Consensus 161 ~~V~l~T~~G~I~IeL~~d~AP~tv~nFl~L~~~g~Ydg~~F~Rv~~~--~q~GD~~g~~i~~~q~G~p~~~iqGg~~~~ 238 (342)
++|+|+|+.|+|+||||++.||++|+||++||+.+||+|+.|||++++ +|+||+.+. ..|+.+.+
T Consensus 1 m~v~l~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~~~~f~rv~~~f~iq~Gd~~~~-------------g~g~~~~~ 67 (153)
T cd01928 1 MSVTLHTNLGDIKIELFCDDCPKACENFLALCASGYYNGCIFHRNIKGFMVQTGDPTGT-------------GKGGESIW 67 (153)
T ss_pred CEEEEEEccccEEEEEcCCCCcHHHHHHHHHHhcCccCCcEEEEeCCCCEEEccccCCC-------------CCCCCccC
Confidence 468999999999999999999999999999999999999999999887 777777642 23444455
Q ss_pred CCccCCCCCCCCCCCCCcEEEEeCCC-----CcEEEEcCCCCCCCCCceEEEEEEcccHHHHHHHhcCCCCCCCcCcccc
Q 019343 239 GTAFKKIPREVCPSIRRGSVAWIGSG-----PEFFISLSNHEEWKNSYTVFGSVLPQNMEIVEKIAQLPTKSDVWNNINV 313 (342)
Q Consensus 239 g~~~~~ip~E~~~~~~rG~Vsma~sG-----sqFFItL~d~p~Ldg~~TVFG~Vv~eGmdVldkI~~~~td~~~~~~i~v 313 (342)
+..+++......+|+++|+|+|+++| |||||++++.|+||++|+|||+|+ +|||||++|+++++++++
T Consensus 68 ~~~~~~e~~~~~~~~~~G~v~ma~~~~~~~~SqFfI~~~~~~~Ld~~~tvFG~V~-~G~dvl~~I~~~~~~~~~------ 140 (153)
T cd01928 68 GKKFEDEFRETLKHDSRGVVSMANNGPNTNGSQFFITYAKQPHLDGKYTVFGKVI-DGFETLDTLEKLPVDKKY------ 140 (153)
T ss_pred CCccccccccCCCcCCCcEEEEeeCCCCCcccEEEEEeCCCcccCCCceEEEEEE-eCHHHHHHHHcCCCCCCC------
Confidence 66665433333456789999999854 799999999999999999999999 999999999999998776
Q ss_pred ccccCCeEEEEE
Q 019343 314 TVLKKPVPLRLR 325 (342)
Q Consensus 314 ~v~~~PV~i~~~ 325 (342)
.|.++|+|...
T Consensus 141 -~P~~~i~I~~~ 151 (153)
T cd01928 141 -RPLEEIRIKDV 151 (153)
T ss_pred -CCcCCeEEEEe
Confidence 55677777644
No 3
>cd01923 cyclophilin_RING cyclophilin_RING: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a modified RING finger domain. This group includes the nuclear proteins, Human hCyP-60 and Caenorhabditis elegans MOG-6 which, compared to the archetypal cyclophilin Human cyclophilin A exhibit reduced peptidylprolyl cis- trans isomerase activity and lack a residue important for cyclophilin binding. Human hCyP-60 has been shown to physically interact with the proteinase inhibitor peptide eglin c and; C. elegans MOG-6 to physically interact with MEP-1, a nuclear zinc finger protein. MOG-6 has been shown to function in germline sex determination.
Probab=100.00 E-value=3e-34 Score=253.48 Aligned_cols=145 Identities=25% Similarity=0.344 Sum_probs=121.8
Q ss_pred EEEEEeceeEEEEECCCCChHHHHHHHHHhhCCCcCCceeeEeeeC--CcccCCCCCccCCCCCCCCccccccccccCCC
Q 019343 163 VGLETEYGTLHIKLFPECAPHSVAYILELLSLRHCAGCQFHRAESR--GQSWDIEGNHIKNAPYGPPFGLIQGTLEALGT 240 (342)
Q Consensus 163 V~l~T~~G~I~IeL~~d~AP~tv~nFl~L~~~g~Ydg~~F~Rv~~~--~q~GD~~g~~i~~~q~G~p~~~iqGg~~~~g~ 240 (342)
|.|+|+.|+|+|+||++.||++|+||++||+.+||+|+.||||+++ +|+||+.+. +.|+.+.++.
T Consensus 2 v~~~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~~~~f~rv~~~~~iq~Gd~~~~-------------g~~~~~~~g~ 68 (159)
T cd01923 2 VRLHTNKGDLNLELHCDKAPKACENFIKLCKKGYYDGTIFHRSIRNFMIQGGDPTGT-------------GRGGESIWGK 68 (159)
T ss_pred EEEEEccccEEEEEeCCCChHHHHHHHHHHhcCccCCcEEEEEeCCcEEEecccCCC-------------CCCCccccCC
Confidence 7899999999999999999999999999999999999999999887 777776542 3445556666
Q ss_pred ccCCCCCCCCCCCCCcEEEEeCC-----CCcEEEEcCCCCCCCCCceEEEEEEcccHHHHHHHhcCCCCCCCcCcccccc
Q 019343 241 AFKKIPREVCPSIRRGSVAWIGS-----GPEFFISLSNHEEWKNSYTVFGSVLPQNMEIVEKIAQLPTKSDVWNNINVTV 315 (342)
Q Consensus 241 ~~~~ip~E~~~~~~rG~Vsma~s-----GsqFFItL~d~p~Ldg~~TVFG~Vv~eGmdVldkI~~~~td~~~~~~i~v~v 315 (342)
.+++.......|+++|+|+|+++ +|||||++++.|+||++|+|||+|+ +||++|++|+++++++++ .
T Consensus 69 ~~~~E~~~~~~h~~~G~v~ma~~~~~s~~sqFfIt~~~~~~Ld~~~~vFG~V~-~G~~vl~~I~~~~~~~~~-------~ 140 (159)
T cd01923 69 PFKDEFKPNLSHDGRGVLSMANSGPNTNGSQFFITYRSCKHLDGKHTVFGRVV-GGLETLEAMENVPDPGTD-------R 140 (159)
T ss_pred ccCcccccCcCcCCCcEEEEeeCCCCCcccEEEEECCCCcccCCCccEEEEEE-cCHHHHHHHHcCCCCCCC-------C
Confidence 66543333345778999999986 4799999999999999999999999 999999999999998776 5
Q ss_pred ccCCeEEEEEecc
Q 019343 316 LKKPVPLRLRRLK 328 (342)
Q Consensus 316 ~~~PV~i~~~r~~ 328 (342)
|.+||+|....+-
T Consensus 141 P~~~i~I~~~~i~ 153 (159)
T cd01923 141 PKEEIKIEDTSVF 153 (159)
T ss_pred CCCCeEEEEeEEE
Confidence 6788887765543
No 4
>cd01927 cyclophilin_WD40 cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain. This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. Function of the protein is not known.
Probab=100.00 E-value=4.5e-34 Score=249.56 Aligned_cols=140 Identities=25% Similarity=0.318 Sum_probs=116.9
Q ss_pred EEEEeceeEEEEECCCCChHHHHHHHHHhhCCCcCCceeeEeeeC--CcccCCCCCccCCCCCCCCccccccccccCCCc
Q 019343 164 GLETEYGTLHIKLFPECAPHSVAYILELLSLRHCAGCQFHRAESR--GQSWDIEGNHIKNAPYGPPFGLIQGTLEALGTA 241 (342)
Q Consensus 164 ~l~T~~G~I~IeL~~d~AP~tv~nFl~L~~~g~Ydg~~F~Rv~~~--~q~GD~~g~~i~~~q~G~p~~~iqGg~~~~g~~ 241 (342)
+|+|+.|+|+||||++.||++|+||++||+.+||+|+.|||++++ +|+||+.+. ..|+.+.++..
T Consensus 1 ~i~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~~~~f~Rvi~~f~iq~Gd~~~~-------------g~g~~~~~~~~ 67 (148)
T cd01927 1 IIHTTKGDIHIRLFPEEAPKTVENFTTHARNGYYNNTIFHRVIKGFMIQTGDPTGD-------------GTGGESIWGKE 67 (148)
T ss_pred CeEeccccEEEEEeCCCCcHHHHHHHHHhhcCCcCCcEEEEEcCCcEEEecccCCC-------------CCCCCcccCCc
Confidence 479999999999999999999999999999999999999999887 777776542 23444556666
Q ss_pred cCCCCCCCCCCCCCcEEEEeCC-----CCcEEEEcCCCCCCCCCceEEEEEEcccHHHHHHHhcCCCCCCCcCccccccc
Q 019343 242 FKKIPREVCPSIRRGSVAWIGS-----GPEFFISLSNHEEWKNSYTVFGSVLPQNMEIVEKIAQLPTKSDVWNNINVTVL 316 (342)
Q Consensus 242 ~~~ip~E~~~~~~rG~Vsma~s-----GsqFFItL~d~p~Ldg~~TVFG~Vv~eGmdVldkI~~~~td~~~~~~i~v~v~ 316 (342)
+++.......|.++|+|+||++ +|||||++++.|+||++|||||+|+ +|||||++|+++++++++ .|
T Consensus 68 ~~~e~~~~~~h~~~G~l~ma~~~~~s~~SqFfIt~~~~p~Ldg~~tvFG~V~-~G~dvl~~I~~~~~~~~~-------~P 139 (148)
T cd01927 68 FEDEFSPSLKHDRPYTLSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVV-KGMDVVQRIENVKTDKND-------RP 139 (148)
T ss_pred cccccccccCcCCCeEEEEeeCCCCCCCceEEEEcCCCcccCCCceEEEEEE-cCHHHHHHHHcCCCCCCC-------CC
Confidence 6543222345667899999985 4799999999999999999999999 999999999999998776 56
Q ss_pred cCCeEEEE
Q 019343 317 KKPVPLRL 324 (342)
Q Consensus 317 ~~PV~i~~ 324 (342)
.+||.|..
T Consensus 140 ~~~i~I~~ 147 (148)
T cd01927 140 YEDIKIIN 147 (148)
T ss_pred cCCeEEEe
Confidence 67777753
No 5
>cd01922 cyclophilin_SpCYP2_like cyclophilin_SpCYP2_like: cyclophilin 2-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to Schizosaccharomyces pombe cyp-2. These proteins bind their respective SNW chromatin binding protein in autologous systems, in a CsA independent manner indicating interaction with a surface outside the PPIase active site. SNW proteins play a basic and broad range role in signaling.
Probab=100.00 E-value=9.4e-34 Score=247.13 Aligned_cols=138 Identities=24% Similarity=0.334 Sum_probs=114.0
Q ss_pred EEEEeceeEEEEECCCCChHHHHHHHHHhhCCCcCCceeeEeeeC--CcccCCCCCccCCCCCCCCccccccccccCCCc
Q 019343 164 GLETEYGTLHIKLFPECAPHSVAYILELLSLRHCAGCQFHRAESR--GQSWDIEGNHIKNAPYGPPFGLIQGTLEALGTA 241 (342)
Q Consensus 164 ~l~T~~G~I~IeL~~d~AP~tv~nFl~L~~~g~Ydg~~F~Rv~~~--~q~GD~~g~~i~~~q~G~p~~~iqGg~~~~g~~ 241 (342)
+|+|+.|+|+||||++.||++|+||++||+.+||+++.||||+++ +|+||+.+. ..++.+.++..
T Consensus 1 ~i~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~~~~f~Rvi~~f~iq~Gd~~~~-------------g~~~~~~~~~~ 67 (146)
T cd01922 1 TLETTMGEITLELYWNHAPKTCKNFYELAKRGYYNGTIFHRLIKDFMIQGGDPTGT-------------GRGGASIYGKK 67 (146)
T ss_pred CeEeccccEEEEEcCCCCcHHHHHHHHHHhcCCcCCcEEEEEcCCcEEEecccCCC-------------CCCcccccCCC
Confidence 378999999999999999999999999999999999999999987 777777642 23444555666
Q ss_pred cCCCCCCCCCCCCCcEEEEeCC-----CCcEEEEcCCCCCCCCCceEEEEEEcccHHHHHHHhcCCCCCCCcCccccccc
Q 019343 242 FKKIPREVCPSIRRGSVAWIGS-----GPEFFISLSNHEEWKNSYTVFGSVLPQNMEIVEKIAQLPTKSDVWNNINVTVL 316 (342)
Q Consensus 242 ~~~ip~E~~~~~~rG~Vsma~s-----GsqFFItL~d~p~Ldg~~TVFG~Vv~eGmdVldkI~~~~td~~~~~~i~v~v~ 316 (342)
+++......+|.++|+|+|+++ +|||||++++.|+||++|+|||+|+ +|||||++|++++++ ++ .|
T Consensus 68 ~~~e~~~~~~h~~~G~l~ma~~~~~s~~sqFfIt~~~~p~Ld~~~tvFG~V~-~G~dvl~~I~~~~~~-~~-------~P 138 (146)
T cd01922 68 FEDEIHPELKHTGAGILSMANAGPNTNGSQFFITLAPTPWLDGKHTIFGRVS-KGMKVIENMVEVQTQ-TD-------RP 138 (146)
T ss_pred cccccccCcCCCCCeEEEEeeCCCCCCccEEEEEcCCCcccCCCCCEEEEEE-cCHHHHHHHHhCCCC-CC-------Cc
Confidence 6543222245678999999985 4799999999999999999999999 999999999999998 54 55
Q ss_pred cCCeEEE
Q 019343 317 KKPVPLR 323 (342)
Q Consensus 317 ~~PV~i~ 323 (342)
.++|.|.
T Consensus 139 ~~~I~I~ 145 (146)
T cd01922 139 IDEVKIL 145 (146)
T ss_pred CCCeEEe
Confidence 6666653
No 6
>KOG0881 consensus Cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.4e-35 Score=244.98 Aligned_cols=143 Identities=24% Similarity=0.336 Sum_probs=127.1
Q ss_pred cEEEEEEeceeEEEEECCCCChHHHHHHHHHhhCCCcCCceeeEeeeC--CcccCCCCCccCCCCCCCCccccccccccC
Q 019343 161 GIVGLETEYGTLHIKLFPECAPHSVAYILELLSLRHCAGCQFHRAESR--GQSWDIEGNHIKNAPYGPPFGLIQGTLEAL 238 (342)
Q Consensus 161 ~~V~l~T~~G~I~IeL~~d~AP~tv~nFl~L~~~g~Ydg~~F~Rv~~~--~q~GD~~g~~i~~~q~G~p~~~iqGg~~~~ 238 (342)
+-|.++|+.|.|++|||-+.||+||.||.+|++.|||+|..|||++++ +|+|||.| +++||.++|
T Consensus 10 ~~V~LeTsmG~i~~ElY~kHaP~TC~NF~eLarrgYYn~v~FHRii~DFmiQGGDPTG-------------TGRGGaSIY 76 (164)
T KOG0881|consen 10 PNVTLETSMGKITLELYWKHAPRTCQNFAELARRGYYNGVIFHRIIKDFMIQGGDPTG-------------TGRGGASIY 76 (164)
T ss_pred CeEEEeecccceehhhhhhcCcHHHHHHHHHHhcccccceeeeehhhhheeecCCCCC-------------CCCCccccc
Confidence 579999999999999999999999999999999999999999999877 66555554 678999999
Q ss_pred CCccCCCCCCCCCCCCCcEEEEeCCC-----CcEEEEcCCCCCCCCCceEEEEEEcccHHHHHHHhcCCCCCCCcCcccc
Q 019343 239 GTAFKKIPREVCPSIRRGSVAWIGSG-----PEFFISLSNHEEWKNSYTVFGSVLPQNMEIVEKIAQLPTKSDVWNNINV 313 (342)
Q Consensus 239 g~~~~~ip~E~~~~~~rG~Vsma~sG-----sqFFItL~d~p~Ldg~~TVFG~Vv~eGmdVldkI~~~~td~~~~~~i~v 313 (342)
|..|+++-.+.+.|...|+|+|||+| |||||+|++.++||++||+||||. .||+|+.++..++||++.+|..++
T Consensus 77 G~kF~DEi~~dLkhTGAGILsMANaGPnTNgSQFFiTLAPt~~LDGKHTIFGRV~-~Gm~vikr~G~v~Td~~DRPi~~~ 155 (164)
T KOG0881|consen 77 GDKFEDEIHSDLKHTGAGILSMANAGPNTNGSQFFITLAPTQWLDGKHTIFGRVC-SGMEVIKRMGMVETDNSDRPIDEV 155 (164)
T ss_pred cchhhhhhhhhhcccchhhhhhhccCCCCCCceEEEEecCccccCCcceeehhhh-hhHHHHHhhcceecCCCCCCccce
Confidence 99998865555677889999999965 799999999999999999999999 999999999999999998665555
Q ss_pred cccc
Q 019343 314 TVLK 317 (342)
Q Consensus 314 ~v~~ 317 (342)
++++
T Consensus 156 kIik 159 (164)
T KOG0881|consen 156 KIIK 159 (164)
T ss_pred eeEe
Confidence 5444
No 7
>cd01921 cyclophilin_RRM cyclophilin_RRM: cyclophilin-type peptidylprolyl cis- trans isomerase domain occuring with a C-terminal RNA recognition motif domain (RRM). This subfamily of the cyclophilin domain family contains a number of eukaryotic cyclophilins having the RRM domain including the nuclear proteins: human hCyP-57, Arabidopsis thaliana AtCYP59, Caenorhabditis elegans CeCyP-44 and Paramecium tetrurelia Kin241. The Kin241 protein has been shown to have a role in cell morphogenesis.
Probab=100.00 E-value=4.4e-33 Score=247.52 Aligned_cols=150 Identities=24% Similarity=0.354 Sum_probs=114.9
Q ss_pred EEEEeceeEEEEECCCCChHHHHHHHHHhhCCCcCCceeeEeeeC--CcccCCCCCccCCCCCCCCccccccccccCCCc
Q 019343 164 GLETEYGTLHIKLFPECAPHSVAYILELLSLRHCAGCQFHRAESR--GQSWDIEGNHIKNAPYGPPFGLIQGTLEALGTA 241 (342)
Q Consensus 164 ~l~T~~G~I~IeL~~d~AP~tv~nFl~L~~~g~Ydg~~F~Rv~~~--~q~GD~~g~~i~~~q~G~p~~~iqGg~~~~g~~ 241 (342)
+|+|+.|+|+||||++.||++|+||++||+.+||+|+.||||+++ +|+||+.+... .|... ..+. ....+..
T Consensus 1 ll~Ts~G~i~ieL~~~~aP~t~~nF~~L~~~~~Y~g~~fhrvi~~f~iQgGd~~~~g~----~~~~~-~~~~-~~~~~~~ 74 (166)
T cd01921 1 LLETTLGDLVIDLFTDECPLACLNFLKLCKLKYYNFCLFYNVQKDFIAQTGDPTGTGA----GGESI-YSQL-YGRQARF 74 (166)
T ss_pred CcEeccCCEEEEEcCCCCCHHHHHHHHHHhcCCcCCCEEEEEeCCceEEECCcCCCCC----CCccc-cccc-ccccCcc
Confidence 378999999999999999999999999999999999999999998 88888875311 11110 0000 0011122
Q ss_pred cCCCCCCCCCCCCCcEEEEeCC-----CCcEEEEcCC-CCCCCCCceEEEEEEcccHHHHHHHhcCCCCCCCcCcccccc
Q 019343 242 FKKIPREVCPSIRRGSVAWIGS-----GPEFFISLSN-HEEWKNSYTVFGSVLPQNMEIVEKIAQLPTKSDVWNNINVTV 315 (342)
Q Consensus 242 ~~~ip~E~~~~~~rG~Vsma~s-----GsqFFItL~d-~p~Ldg~~TVFG~Vv~eGmdVldkI~~~~td~~~~~~i~v~v 315 (342)
+.+......+|+++|+|+||++ +|||||++.+ .++||++|||||+|+ +|||||++|+++++++++ .
T Consensus 75 ~~~e~~~~~~h~~~G~l~ma~~~~~~~~SQFfIt~~~~~~~Ldg~~tvFG~Vi-~G~dvv~~I~~~~~~~~~-------~ 146 (166)
T cd01921 75 FEPEILPLLKHSKKGTVSMVNAGDNLNGSQFYITLGENLDYLDGKHTVFGQVV-EGFDVLEKINDAIVDDDG-------R 146 (166)
T ss_pred cCcccCCccccCCceEEEEeECCCCCccceEEEEcCCCCcccCCCccEEEEEE-cCHHHHHHHHcCCCCCCC-------C
Confidence 3222122345678999999985 4899999986 799999999999999 999999999999998877 5
Q ss_pred ccCCeEEEEEec
Q 019343 316 LKKPVPLRLRRL 327 (342)
Q Consensus 316 ~~~PV~i~~~r~ 327 (342)
|.++|.|+.+.+
T Consensus 147 P~~~i~I~~~~i 158 (166)
T cd01921 147 PLKDIRIKHTHI 158 (166)
T ss_pred CCCCeEEEEEEE
Confidence 667777765443
No 8
>cd01925 cyclophilin_CeCYP16-like cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16. C. elegans CeCYP-16, compared to the archetypal cyclophilin Human cyclophilin A has, a reduced peptidylprolyl cis- trans isomerase activity, is cyclosporin insensitive and shows an altered substrate preference favoring, hydrophobic, acidic or amide amino acids. Most members of this subfamily have a glutamate residue in the active site at the position equivalent to a tryptophan (W121 in Human cyclophilin A), which has been shown to be important for cyclophilin binding.
Probab=100.00 E-value=1.2e-32 Score=246.03 Aligned_cols=152 Identities=26% Similarity=0.302 Sum_probs=127.1
Q ss_pred CCccEEEEEEeceeEEEEECCCCChHHHHHHHHHhhCCCcCCceeeEeeeC--CcccCCCCCccCCCCCCCCcccccccc
Q 019343 158 KGQGIVGLETEYGTLHIKLFPECAPHSVAYILELLSLRHCAGCQFHRAESR--GQSWDIEGNHIKNAPYGPPFGLIQGTL 235 (342)
Q Consensus 158 ~~~~~V~l~T~~G~I~IeL~~d~AP~tv~nFl~L~~~g~Ydg~~F~Rv~~~--~q~GD~~g~~i~~~q~G~p~~~iqGg~ 235 (342)
+.+.+|.|+|+.|+|+|+||++.||++|+||++||+.+||+|+.||||+++ +|+||+.+ .+.|+.
T Consensus 3 ~~~~~v~i~Ts~G~i~ieL~~~~~P~t~~nF~~L~~~~~Y~~~~f~Rvi~~f~iQgGd~~~-------------~g~g~~ 69 (171)
T cd01925 3 PTTGKVILKTTAGDIDIELWSKEAPKACRNFIQLCLEGYYDNTIFHRVVPGFIIQGGDPTG-------------TGTGGE 69 (171)
T ss_pred CcccEEEEEEccccEEEEEeCCCChHHHHHHHHHHhcCCCCCCEEEEEcCCcEEEccccCC-------------CCccCc
Confidence 456789999999999999999999999999999999999999999999887 77777654 234555
Q ss_pred ccCCCccCCCCCCCCCCCCCcEEEEeCCC-----CcEEEEcCCCCCCCCCceEEEEEEcccHHHHHHHhcCCCCCCCcCc
Q 019343 236 EALGTAFKKIPREVCPSIRRGSVAWIGSG-----PEFFISLSNHEEWKNSYTVFGSVLPQNMEIVEKIAQLPTKSDVWNN 310 (342)
Q Consensus 236 ~~~g~~~~~ip~E~~~~~~rG~Vsma~sG-----sqFFItL~d~p~Ldg~~TVFG~Vv~eGmdVldkI~~~~td~~~~~~ 310 (342)
+.++..+++.......++++|+|+||++| |||||++++.++||++|||||+|++++|+++++|+++++++++
T Consensus 70 s~~g~~~~~E~~~~~~~~~~G~l~ma~~g~~s~~sqFfIt~~~~~~ldg~~tvFG~V~g~~~~~v~~i~~~~~~~~~--- 146 (171)
T cd01925 70 SIYGEPFKDEFHSRLRFNRRGLVGMANAGDDSNGSQFFFTLDKADELNNKHTLFGKVTGDTIYNLLKLAEVETDKDE--- 146 (171)
T ss_pred ccCCCccCcccccCcCCCCCcEEEECcCCCCCcccEEEEEcCCCcccCCCceEEEEEEECcHHHHHHHhcCCcCCCC---
Confidence 66676665543333457889999999854 7999999999999999999999996679999999999999876
Q ss_pred cccccccCCeEEEEEeccC
Q 019343 311 INVTVLKKPVPLRLRRLKK 329 (342)
Q Consensus 311 i~v~v~~~PV~i~~~r~~~ 329 (342)
.|.+||.|..+.+-.
T Consensus 147 ----~P~~~i~I~~~~i~~ 161 (171)
T cd01925 147 ----RPVYPPKITSVEVLE 161 (171)
T ss_pred ----CcCCCeEEEEEEEEc
Confidence 467888887765533
No 9
>PRK10903 peptidyl-prolyl cis-trans isomerase A (rotamase A); Provisional
Probab=99.98 E-value=7.6e-32 Score=244.80 Aligned_cols=150 Identities=25% Similarity=0.354 Sum_probs=118.6
Q ss_pred CCccEEEEEEeceeEEEEECCCCChHHHHHHHHHhhCCCcCCceeeEeeeC--CcccCCCCCccCCCCCCCCcccccccc
Q 019343 158 KGQGIVGLETEYGTLHIKLFPECAPHSVAYILELLSLRHCAGCQFHRAESR--GQSWDIEGNHIKNAPYGPPFGLIQGTL 235 (342)
Q Consensus 158 ~~~~~V~l~T~~G~I~IeL~~d~AP~tv~nFl~L~~~g~Ydg~~F~Rv~~~--~q~GD~~g~~i~~~q~G~p~~~iqGg~ 235 (342)
+++..|.|+|+.|+|+||||++.||++|+||++||+.+||+|+.|||++++ +|+||+.+.. . +
T Consensus 26 ~~~~~v~l~T~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Ydg~~FhRvi~~f~iQgG~~~~~~-~------------~-- 90 (190)
T PRK10903 26 KGDPHVLLTTSAGNIELELNSQKAPVSVKNFVDYVNSGFYNNTTFHRVIPGFMIQGGGFTEQM-Q------------Q-- 90 (190)
T ss_pred CCCcEEEEEeccccEEEEEeCCCCcHHHHHHHHHHhcCCcCCcEEEEEeCCceEEeCCcCCCC-C------------C--
Confidence 567789999999999999999999999999999999999999999999988 7877766421 0 0
Q ss_pred ccCCCccCCCCCCCCCCCCCcEEEEeCC------CCcEEEEcCCCCCCCC-----CceEEEEEEcccHHHHHHHhcCCCC
Q 019343 236 EALGTAFKKIPREVCPSIRRGSVAWIGS------GPEFFISLSNHEEWKN-----SYTVFGSVLPQNMEIVEKIAQLPTK 304 (342)
Q Consensus 236 ~~~g~~~~~ip~E~~~~~~rG~Vsma~s------GsqFFItL~d~p~Ldg-----~~TVFG~Vv~eGmdVldkI~~~~td 304 (342)
..++.++.+... ...++++|+|+||++ +|||||++.+.++||+ +|||||+|+ +|||||++|++++++
T Consensus 91 ~~~~~~~~~e~~-~~l~~~~G~lama~~~~~~sn~SQFfIt~~~~~~ld~~~~dg~ytvFG~V~-eG~dvl~~I~~~~~~ 168 (190)
T PRK10903 91 KKPNPPIKNEAD-NGLRNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVV-KGMDVADKISQVPTH 168 (190)
T ss_pred CCCCCcccCccc-ccCcCCCcEEEeCCCCCCCCcccEEEEECcCcccccCCccCCCccEEEEEe-cCHHHHHHHHcCCCC
Confidence 112223333211 123678999999973 4899999999999984 899999999 999999999999997
Q ss_pred CCCcCccccccccCCeEEEEEec
Q 019343 305 SDVWNNINVTVLKKPVPLRLRRL 327 (342)
Q Consensus 305 ~~~~~~i~v~v~~~PV~i~~~r~ 327 (342)
+++ +. ..+|.+||.|..+.+
T Consensus 169 ~~~-~~--~~~P~~~v~I~~~~v 188 (190)
T PRK10903 169 DVG-PY--QNVPSKPVVILSAKV 188 (190)
T ss_pred CCC-CC--CCcccCCeEEEEEEE
Confidence 642 11 137888998876644
No 10
>KOG0884 consensus Similar to cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=3.3e-32 Score=228.43 Aligned_cols=136 Identities=27% Similarity=0.450 Sum_probs=124.1
Q ss_pred cEEEEEEeceeEEEEECCCCChHHHHHHHHHhhCCCcCCceeeEeeeCCcccCCCCCccCCCCCCCCccccccccccCCC
Q 019343 161 GIVGLETEYGTLHIKLFPECAPHSVAYILELLSLRHCAGCQFHRAESRGQSWDIEGNHIKNAPYGPPFGLIQGTLEALGT 240 (342)
Q Consensus 161 ~~V~l~T~~G~I~IeL~~d~AP~tv~nFl~L~~~g~Ydg~~F~Rv~~~~q~GD~~g~~i~~~q~G~p~~~iqGg~~~~g~ 240 (342)
++|+++|+.|+|.||||.+.+|++|+||+.||...||++|.|||-+++. + .|+|+|...++||.++||.
T Consensus 1 msvtlht~~gdikiev~~e~tpktce~~l~~~~~~~~n~~~~~~~~~~f--------~---v~~~~~~~tgrgg~siwg~ 69 (161)
T KOG0884|consen 1 MSVTLHTDVGDIKIEVFCERTPKTCENFLALCASDYYNGCIFHRNIKGF--------M---VQTGDPTHTGRGGNSIWGK 69 (161)
T ss_pred CeEEEeeccCcEEEEEEecCChhHHHHHHHHhhhhhccceeecCCCCCc--------E---EEeCCCCCCCCCCccccCC
Confidence 4799999999999999999999999999999999999999999996541 0 1667777788999999999
Q ss_pred ccCCCCCCCCCCCCCcEEEEeCCC-----CcEEEEcCCCCCCCCCceEEEEEEcccHHHHHHHhcCCCCCCCc
Q 019343 241 AFKKIPREVCPSIRRGSVAWIGSG-----PEFFISLSNHEEWKNSYTVFGSVLPQNMEIVEKIAQLPTKSDVW 308 (342)
Q Consensus 241 ~~~~ip~E~~~~~~rG~Vsma~sG-----sqFFItL~d~p~Ldg~~TVFG~Vv~eGmdVldkI~~~~td~~~~ 308 (342)
.|++...|.++|+.||.|+||++| |||||+.+.+|+||.+|||||+|+ +|+|.|+.|+++++++..+
T Consensus 70 ~fede~~~~lkh~~rg~vsmanngp~tn~sqffity~kq~hldmkytvfgkvi-dg~etldele~l~v~~kty 141 (161)
T KOG0884|consen 70 KFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVI-DGLETLDELEKLPVNEKTY 141 (161)
T ss_pred cchHHHHHHHhhccceeEEcccCCCCCCCceEEEEecCCCccceeEeeeeeec-cchhhHHHHhhcccCcccc
Confidence 999887888899999999999965 799999999999999999999999 9999999999999999843
No 11
>cd01920 cyclophilin_EcCYP_like cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E. coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these have reduced affinity for cyclosporin A. E. coli cyclophilin A has a similar peptidylprolyl cis- trans isomerase activity to the human cyclophilin A. Most members of this subfamily contain a phenylalanine residue at the position equivalent to Human cyclophilin W121, where a tyrptophan has been shown to be important for cyclophilin binding.
Probab=99.97 E-value=3.6e-31 Score=232.91 Aligned_cols=138 Identities=26% Similarity=0.334 Sum_probs=109.8
Q ss_pred EEEeceeEEEEECCCCChHHHHHHHHHhhCCCcCCceeeEeeeC--CcccCCCCCccCCCCCCCCccccccccccCCCcc
Q 019343 165 LETEYGTLHIKLFPECAPHSVAYILELLSLRHCAGCQFHRAESR--GQSWDIEGNHIKNAPYGPPFGLIQGTLEALGTAF 242 (342)
Q Consensus 165 l~T~~G~I~IeL~~d~AP~tv~nFl~L~~~g~Ydg~~F~Rv~~~--~q~GD~~g~~i~~~q~G~p~~~iqGg~~~~g~~~ 242 (342)
|+|+.|+|+|+||++.||++|+||++||+.+||+|+.||||+++ +|+||+..... + ..++..+
T Consensus 2 l~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Yd~~~fhRvi~~f~iQ~Gd~~~~~~-------------~--~~~~~~~ 66 (155)
T cd01920 2 FQTSLGDIVVELYDDKAPITVENFLAYVRKGFYDNTIFHRVISGFVIQGGGFTPDLA-------------Q--KETLKPI 66 (155)
T ss_pred cEecceeEEEEEeCCCCcHHHHHHHHHHhcCCCCCCEEEEEeCCcEEEeCCCCCCCC-------------c--cccCCcc
Confidence 78999999999999999999999999999999999999999887 77776654210 0 1112223
Q ss_pred CCCCCCCC--CCCCCcEEEEeCC------CCcEEEEcCCCCCCCC-----CceEEEEEEcccHHHHHHHhcCCCCCCCcC
Q 019343 243 KKIPREVC--PSIRRGSVAWIGS------GPEFFISLSNHEEWKN-----SYTVFGSVLPQNMEIVEKIAQLPTKSDVWN 309 (342)
Q Consensus 243 ~~ip~E~~--~~~~rG~Vsma~s------GsqFFItL~d~p~Ldg-----~~TVFG~Vv~eGmdVldkI~~~~td~~~~~ 309 (342)
++|.. .++++|+||||++ +|||||++++.++||+ +|||||+|+ +||+||++|++++++++ .+
T Consensus 67 ---~~e~~~~~~~~~G~v~ma~~~~~~s~~SqFfI~~~~~~~ld~~~~~~~ytvFG~V~-eG~dvl~~I~~~~~~~~-~~ 141 (155)
T cd01920 67 ---KNEAGNGLSNTRGTIAMARTNAPDSATSQFFINLKDNASLDYQNEQWGYTVFGEVT-EGMDVVDKIAGVETYSF-GS 141 (155)
T ss_pred ---cCcccccccCCceEEEECCCCCCCCccceEEEECCCchhcCCcccCCCccEEEEEe-cCHHHHHHHHcCCccCC-CC
Confidence 33432 3578999999974 3899999999999995 799999999 99999999999999775 11
Q ss_pred ccccccccCCeEEEE
Q 019343 310 NINVTVLKKPVPLRL 324 (342)
Q Consensus 310 ~i~v~v~~~PV~i~~ 324 (342)
. ..+|..||.|..
T Consensus 142 ~--~~~p~~~v~i~~ 154 (155)
T cd01920 142 Y--QDVPVQDVIIES 154 (155)
T ss_pred c--CCCcCCCeEEEE
Confidence 1 136778887753
No 12
>PRK10791 peptidyl-prolyl cis-trans isomerase B (rotamase B); Provisional
Probab=99.97 E-value=9.6e-31 Score=232.48 Aligned_cols=145 Identities=25% Similarity=0.328 Sum_probs=111.3
Q ss_pred EEEEEeceeEEEEECCCCChHHHHHHHHHhhCCCcCCceeeEeeeC--CcccCCCCCccCCCCCCCCccccccccccCCC
Q 019343 163 VGLETEYGTLHIKLFPECAPHSVAYILELLSLRHCAGCQFHRAESR--GQSWDIEGNHIKNAPYGPPFGLIQGTLEALGT 240 (342)
Q Consensus 163 V~l~T~~G~I~IeL~~d~AP~tv~nFl~L~~~g~Ydg~~F~Rv~~~--~q~GD~~g~~i~~~q~G~p~~~iqGg~~~~g~ 240 (342)
|.|+|++|+|+|+||++.||++++||++||+.+||+++.||||+++ +|+||+... ..+ ..++.
T Consensus 2 v~~~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Yd~~~fhRvi~~f~iQgGd~~~~------------~~~---~~~~~ 66 (164)
T PRK10791 2 VTFHTNHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTIFHRVINGFMIQGGGFEPG------------MKQ---KATKE 66 (164)
T ss_pred EEEEEccccEEEEEeCCCCcHHHHHHHHHHhcCCcCCcEEEEEecCcEEEeCCcCCC------------CCc---CCCCC
Confidence 6799999999999999999999999999999999999999999988 777765321 000 11222
Q ss_pred ccCCCCCCCCCCCCCcEEEEeCC------CCcEEEEcCCCCCCC-------C-CceEEEEEEcccHHHHHHHhcCCCCCC
Q 019343 241 AFKKIPREVCPSIRRGSVAWIGS------GPEFFISLSNHEEWK-------N-SYTVFGSVLPQNMEIVEKIAQLPTKSD 306 (342)
Q Consensus 241 ~~~~ip~E~~~~~~rG~Vsma~s------GsqFFItL~d~p~Ld-------g-~~TVFG~Vv~eGmdVldkI~~~~td~~ 306 (342)
++++..+ ...++++|+||||+. +|||||++.+.++|| + +|||||+|+ +|||||++|++++++.+
T Consensus 67 ~~~~e~~-~~~~~~~G~lsma~~~~p~s~~SQFfI~~~~~~~ld~~~~~~d~~~~tvFG~V~-eG~dvl~~I~~~~~~~~ 144 (164)
T PRK10791 67 PIKNEAN-NGLKNTRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVV-EGMDVVDKIKGVATGRS 144 (164)
T ss_pred CcCCccc-ccccCCCcEEEECCCCCcCCccceEEEEecCchhhcccccccCCCCccEEEEEe-cCHHHHHHHHcCcCCCC
Confidence 3332211 123568999999974 489999999987775 3 799999999 99999999999999764
Q ss_pred CcCccccccccCCeEEEEEec
Q 019343 307 VWNNINVTVLKKPVPLRLRRL 327 (342)
Q Consensus 307 ~~~~i~v~v~~~PV~i~~~r~ 327 (342)
+.. ...|..+|.|....+
T Consensus 145 ~~~---~~~P~~~v~I~~~~i 162 (164)
T PRK10791 145 GMH---QDVPKEDVIIESVTV 162 (164)
T ss_pred Ccc---CCCcCCCeEEEEEEE
Confidence 210 125778888876554
No 13
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.8e-31 Score=259.07 Aligned_cols=144 Identities=24% Similarity=0.321 Sum_probs=129.7
Q ss_pred ccEEEEEEeceeEEEEECCCCChHHHHHHHHHhhCCCcCCceeeEeeeC--CcccCCCCCccCCCCCCCCcccccccccc
Q 019343 160 QGIVGLETEYGTLHIKLFPECAPHSVAYILELLSLRHCAGCQFHRAESR--GQSWDIEGNHIKNAPYGPPFGLIQGTLEA 237 (342)
Q Consensus 160 ~~~V~l~T~~G~I~IeL~~d~AP~tv~nFl~L~~~g~Ydg~~F~Rv~~~--~q~GD~~g~~i~~~q~G~p~~~iqGg~~~ 237 (342)
.+.|.|+|+.|+|-|||+.|.+|++|+||+.||+.|||+|+.|||.|.+ +|+|||. +.+.||.++
T Consensus 277 kgyvrl~Tn~G~lNlELhcd~~P~aceNFI~lc~~gYYnnt~FHRsIrnFmiQGGDPT-------------GTG~GGeSi 343 (518)
T KOG0883|consen 277 KGYVRLVTNHGPLNLELHCDYAPRACENFITLCKNGYYNNTIFHRSIRNFMIQGGDPT-------------GTGRGGESI 343 (518)
T ss_pred cceEEEeccCCceeeEeecCcchHHHHHHHHHHhcccccchHHHHHHHHHeeeCCCCC-------------CCCCCCccc
Confidence 4679999999999999999999999999999999999999999999776 6655555 477899999
Q ss_pred CCCccCCCCCCCCCCCCCcEEEEeCCC-----CcEEEEcCCCCCCCCCceEEEEEEcccHHHHHHHhcCCCCCCCcCccc
Q 019343 238 LGTAFKKIPREVCPSIRRGSVAWIGSG-----PEFFISLSNHEEWKNSYTVFGSVLPQNMEIVEKIAQLPTKSDVWNNIN 312 (342)
Q Consensus 238 ~g~~~~~ip~E~~~~~~rG~Vsma~sG-----sqFFItL~d~p~Ldg~~TVFG~Vv~eGmdVldkI~~~~td~~~~~~i~ 312 (342)
||.+|+|.....+.|..||+|+|||+| |||||+..+..+||++||+||+|+ -|+++|.+|++++++++.
T Consensus 344 WgKpFkDEf~~~l~H~gRGvlSMANsGpnTNgSQFFItyrsckhLd~KHTIFGrvV-GGldtL~amEnve~d~~D----- 417 (518)
T KOG0883|consen 344 WGKPFKDEFCSNLSHDGRGVLSMANSGPNTNGSQFFITYRSCKHLDNKHTIFGRVV-GGLDTLTAMENVETDEKD----- 417 (518)
T ss_pred cCCccccccCCCCCcCCcceEeeccCCCCCCCceEEEEecchhhccccceeeeeee-ccHHHHHHHhcCCCCCCC-----
Confidence 999999977777788999999999965 799999999999999999999999 899999999999999987
Q ss_pred cccccCCeEEEE
Q 019343 313 VTVLKKPVPLRL 324 (342)
Q Consensus 313 v~v~~~PV~i~~ 324 (342)
+|+.+|.|..
T Consensus 418 --rP~e~I~i~~ 427 (518)
T KOG0883|consen 418 --RPKEEIKIED 427 (518)
T ss_pred --CcccceEEee
Confidence 5666666643
No 14
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=4.3e-31 Score=255.55 Aligned_cols=144 Identities=22% Similarity=0.264 Sum_probs=125.8
Q ss_pred ccEEEEEE-----eceeEEEEECCCCChHHHHHHHHHhhCC-----------CcCCceeeEeeeC--CcccCCCCCccCC
Q 019343 160 QGIVGLET-----EYGTLHIKLFPECAPHSVAYILELLSLR-----------HCAGCQFHRAESR--GQSWDIEGNHIKN 221 (342)
Q Consensus 160 ~~~V~l~T-----~~G~I~IeL~~d~AP~tv~nFl~L~~~g-----------~Ydg~~F~Rv~~~--~q~GD~~g~~i~~ 221 (342)
++.|.|.. ..|+|+++||.|.+|+||+||+.||.+- +|+|+.||||+++ +|+||....
T Consensus 8 ~pr~ffDISI~ge~~GRIvfeLf~dv~PKTaENFraLCtGE~G~~~~~gk~L~YKG~~FHRViK~FMiQgGDfs~g---- 83 (372)
T KOG0546|consen 8 NPRVFFDISIGGEPAGRIVFELFNDVVPKTAENFRALCTGEKGGGLTTGKPLHYKGSRFHRVIKNFMIQGGDFSEG---- 83 (372)
T ss_pred CceEEEEEEeCCcccceEEEEeecccCchhHHHHHHHhccccCCCCCCCCeeeecCchhheeeecceeeccccccC----
Confidence 45666665 4799999999999999999999999642 5999999999999 999998842
Q ss_pred CCCCCCccccccccccCCCccCCCCCCCCCCCCCcEEEEeCC-----CCcEEEEcCCCCCCCCCceEEEEEEcccHHHHH
Q 019343 222 APYGPPFGLIQGTLEALGTAFKKIPREVCPSIRRGSVAWIGS-----GPEFFISLSNHEEWKNSYTVFGSVLPQNMEIVE 296 (342)
Q Consensus 222 ~q~G~p~~~iqGg~~~~g~~~~~ip~E~~~~~~rG~Vsma~s-----GsqFFItL~d~p~Ldg~~TVFG~Vv~eGmdVld 296 (342)
.+.||.++||..|+| ++...+|.++++|||||. |||||||+.+.|||||.|+|||+|+ .|++||+
T Consensus 84 --------nGtGGeSIYG~~FdD-EnF~lKHdrpflLSMAN~GpNTNgSQFFITT~p~PHLdGkHVVFGqVI-~G~~VVr 153 (372)
T KOG0546|consen 84 --------NGTGGESIYGEKFDD-ENFELKHDRPFLLSMANRGPNTNGSQFFITTVPTPHLDGKHVVFGQVI-KGKEVVR 153 (372)
T ss_pred --------CCCCccccccccccc-ccceeccCcchhhhhhcCCCCCCCcceEEeCCCCCCcCCceeEEeeEe-echhHHH
Confidence 468999999999987 566688999999999995 5899999999999999999999999 9999999
Q ss_pred HHhcCCCCCCCcCccccccccCCeEEEE
Q 019343 297 KIAQLPTKSDVWNNINVTVLKKPVPLRL 324 (342)
Q Consensus 297 kI~~~~td~~~~~~i~v~v~~~PV~i~~ 324 (342)
.|+++++|.+. .|.++|+|.-
T Consensus 154 ~IEn~~~d~~s-------kP~~dV~I~d 174 (372)
T KOG0546|consen 154 EIENLETDEES-------KPLADVVISD 174 (372)
T ss_pred HHhccccccCC-------CCccceEecc
Confidence 99999999987 5556666643
No 15
>cd00317 cyclophilin cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases. This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the immunosuppressive drug cyclosporin (CsA). Immunosuppression in vertebrates is believed to be the result of the cyclophilin A-cyclosporin protein drug complex binding to and inhibiting the protein-phosphatase calcineurin. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. Cyclophilins are a diverse family in terms of function and have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. This group contains human cyclophilin 40, a co-chaperone of the hsp90 chaperone system; human cyclophilin A, a chaperone in the HIV-1 infectious process and; human cyclophilin H, a component of the U4/U6 snRNP
Probab=99.97 E-value=3.8e-30 Score=222.20 Aligned_cols=135 Identities=31% Similarity=0.457 Sum_probs=111.2
Q ss_pred EEEEeceeEEEEECCCCChHHHHHHHHHhhCCCcCCceeeEeeeC--CcccCCCCCccCCCCCCCCccccccccccCCCc
Q 019343 164 GLETEYGTLHIKLFPECAPHSVAYILELLSLRHCAGCQFHRAESR--GQSWDIEGNHIKNAPYGPPFGLIQGTLEALGTA 241 (342)
Q Consensus 164 ~l~T~~G~I~IeL~~d~AP~tv~nFl~L~~~g~Ydg~~F~Rv~~~--~q~GD~~g~~i~~~q~G~p~~~iqGg~~~~g~~ 241 (342)
.++|+.|+|+|+||++.||++|+||++||+.++|+|+.|||++++ +|+||+.+.. .++ ..++..
T Consensus 1 ~~~T~~G~i~IeL~~~~~P~~~~nF~~l~~~~~Y~~~~f~rv~~~~~iq~Gd~~~~~-------------~~~-~~~~~~ 66 (146)
T cd00317 1 TLDTTKGRIVIELYGDEAPKTVENFLSLARGGFYDGTTFHRVIPGFMIQGGDPTGTG-------------GGG-SGPGYK 66 (146)
T ss_pred CeEeccCcEEEEEcCCCChHHHHHHHHHHhcCCcCCCEEEEEeCCCeEEECCCCCCC-------------CCC-CcCCCc
Confidence 378999999999999999999999999999999999999999986 7777776531 111 122333
Q ss_pred cCCCCCCCC---CCCCCcEEEEeCCC-----CcEEEEcCCCCCCCCCceEEEEEEcccHHHHHHHhcCCCCCCCcCcccc
Q 019343 242 FKKIPREVC---PSIRRGSVAWIGSG-----PEFFISLSNHEEWKNSYTVFGSVLPQNMEIVEKIAQLPTKSDVWNNINV 313 (342)
Q Consensus 242 ~~~ip~E~~---~~~~rG~Vsma~sG-----sqFFItL~d~p~Ldg~~TVFG~Vv~eGmdVldkI~~~~td~~~~~~i~v 313 (342)
+ +.|.. .++++|+|+|++++ +||||++.+.++||++|+|||+|+ +||++|++|+++++++++
T Consensus 67 ~---~~E~~~~~~~~~~G~v~~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~V~-~G~~vl~~I~~~~~~~~~------ 136 (146)
T cd00317 67 F---PDENFPLKYHHRRGTLSMANAGPNTNGSQFFITTAPTPHLDGKHTVFGKVV-EGMDVVDKIERGDTDENG------ 136 (146)
T ss_pred c---CCccccCcCcCCCcEEEEeeCCCCCcccEEEEECCCCcccCCCceEEEEEe-CCHHHHHHHHcCCCCCCC------
Confidence 3 34443 26789999999854 799999999999999999999999 899999999999999877
Q ss_pred ccccCCeEEE
Q 019343 314 TVLKKPVPLR 323 (342)
Q Consensus 314 ~v~~~PV~i~ 323 (342)
.|.++|.|.
T Consensus 137 -~P~~~i~I~ 145 (146)
T cd00317 137 -RPIKPVTIS 145 (146)
T ss_pred -cCcCceEEe
Confidence 555666653
No 16
>PLN03149 peptidyl-prolyl isomerase H (cyclophilin H); Provisional
Probab=99.97 E-value=9.2e-30 Score=230.43 Aligned_cols=144 Identities=24% Similarity=0.343 Sum_probs=114.9
Q ss_pred cEEEEEE-----eceeEEEEECCCCChHHHHHHHHHhhCCC--------cCCceeeEeeeC--CcccCCCCCccCCCCCC
Q 019343 161 GIVGLET-----EYGTLHIKLFPECAPHSVAYILELLSLRH--------CAGCQFHRAESR--GQSWDIEGNHIKNAPYG 225 (342)
Q Consensus 161 ~~V~l~T-----~~G~I~IeL~~d~AP~tv~nFl~L~~~g~--------Ydg~~F~Rv~~~--~q~GD~~g~~i~~~q~G 225 (342)
..|.|++ +.|+|+|+||.+.||++|+||++||+..| |+++.||||+++ +|+||+...
T Consensus 19 ~~v~~di~~~~~~~G~i~ieL~~~~aP~t~~NF~~Lc~g~~~~~g~~~~Y~~~~fhrVi~~f~iqgGd~~~~-------- 90 (186)
T PLN03149 19 PVVFFDVTIGGIPAGRIKMELFADIAPKTAENFRQFCTGEFRKAGLPQGYKGCQFHRVIKDFMIQGGDFLKG-------- 90 (186)
T ss_pred CEEEEEEeeCCcccccEEEEEcCCCCcHHHHHHHHHHhhhccccCcccccCCcEEEEEcCCcEEEcCCcccC--------
Confidence 3455553 46999999999999999999999997654 999999999988 787776421
Q ss_pred CCccccccccccCCCccCCCCCCCCCCCCCcEEEEeCCC-----CcEEEEcCCCCCCCCCceEEEEEEcccHHHHHHHhc
Q 019343 226 PPFGLIQGTLEALGTAFKKIPREVCPSIRRGSVAWIGSG-----PEFFISLSNHEEWKNSYTVFGSVLPQNMEIVEKIAQ 300 (342)
Q Consensus 226 ~p~~~iqGg~~~~g~~~~~ip~E~~~~~~rG~Vsma~sG-----sqFFItL~d~p~Ldg~~TVFG~Vv~eGmdVldkI~~ 300 (342)
.+.|+.+.++..|++. .....|+++|+|+|+++| |||||++.+.|+||++|||||+|+.+||+||++|++
T Consensus 91 ----~g~g~~~~~g~~f~~e-~~~~~h~~~G~lsma~~g~~s~~sqFfIt~~~~p~Ldg~~tVFG~Vi~eG~dvl~~I~~ 165 (186)
T PLN03149 91 ----DGTGCVSIYGSKFEDE-NFIAKHTGPGLLSMANSGPNTNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIEN 165 (186)
T ss_pred ----CCCCcccccCCccCCc-ccccccCCCCEEEEeeCCCCCcccEEEEECCCCCccCCCceEEEEEEECcHHHHHHHHc
Confidence 2234445566666442 223457789999999854 799999999999999999999998459999999999
Q ss_pred CCCCCCCcCccccccccCCeEEEE
Q 019343 301 LPTKSDVWNNINVTVLKKPVPLRL 324 (342)
Q Consensus 301 ~~td~~~~~~i~v~v~~~PV~i~~ 324 (342)
++++.++ .|.+||+|.-
T Consensus 166 ~~~~~~~-------~P~~~i~I~~ 182 (186)
T PLN03149 166 VATGPNN-------RPKLACVISE 182 (186)
T ss_pred CCCCCCC-------CCcCCeEEEe
Confidence 9998776 6677777764
No 17
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.2e-30 Score=257.20 Aligned_cols=145 Identities=25% Similarity=0.247 Sum_probs=127.5
Q ss_pred EEEEEEeceeEEEEECCCCChHHHHHHHHHhhCCCcCCceeeEeeeC--CcccCCCCCccCCCCCCCCccccccccccCC
Q 019343 162 IVGLETEYGTLHIKLFPECAPHSVAYILELLSLRHCAGCQFHRAESR--GQSWDIEGNHIKNAPYGPPFGLIQGTLEALG 239 (342)
Q Consensus 162 ~V~l~T~~G~I~IeL~~d~AP~tv~nFl~L~~~g~Ydg~~F~Rv~~~--~q~GD~~g~~i~~~q~G~p~~~iqGg~~~~g 239 (342)
.+.|+|++|+|.|.|||+++|++|+||..-++.|||||..|||||++ +|+|||.| .+.||.++||
T Consensus 406 ~aiihtt~gdi~~kl~p~ecpktvenf~th~rngyy~~~~fhriik~fmiqtgdp~g-------------~gtggesiwg 472 (558)
T KOG0882|consen 406 AAIIHTTQGDIHIKLYPEECPKTVENFTTHSRNGYYDNHTFHRIIKGFMIQTGDPLG-------------DGTGGESIWG 472 (558)
T ss_pred ceEEEecccceEEEecccccchhhhhhhccccCccccCcchHHhhhhheeecCCCCC-------------CCCCCccccc
Confidence 57899999999999999999999999999999999999999999887 66666665 4578999999
Q ss_pred CccCCCCCCCCCCCCCcEEEEeCCC-----CcEEEEcCCCCCCCCCceEEEEEEcccHHHHHHHhcCCCCCCCcCccccc
Q 019343 240 TAFKKIPREVCPSIRRGSVAWIGSG-----PEFFISLSNHEEWKNSYTVFGSVLPQNMEIVEKIAQLPTKSDVWNNINVT 314 (342)
Q Consensus 240 ~~~~~ip~E~~~~~~rG~Vsma~sG-----sqFFItL~d~p~Ldg~~TVFG~Vv~eGmdVldkI~~~~td~~~~~~i~v~ 314 (342)
..|++.-...+.|+++-+|+|||+| ||||||+.+.|+||++|||||||+ .||+|+++|+++.|+..+
T Consensus 473 ~dfedefh~~lrhdrpft~smanag~ntngsqffit~~~tpwld~khtvfgrv~-~gm~vvqri~~v~t~k~d------- 544 (558)
T KOG0882|consen 473 KDFEDEFHPNLRHDRPFTVSMANAGPNTNGSQFFITTVPTPWLDGKHTVFGRVT-AGMDVVQRIEQVKTDKYD------- 544 (558)
T ss_pred ccchhhcCcccccCCCceEEecccCCCCCCceEEEEecCccccCCcceeEEEEe-cchhHHhHhhhcccCcCC-------
Confidence 9997744444557899999999964 899999999999999999999999 999999999999998877
Q ss_pred cccCCeEEEEEec
Q 019343 315 VLKKPVPLRLRRL 327 (342)
Q Consensus 315 v~~~PV~i~~~r~ 327 (342)
.|.++|.|.-+.+
T Consensus 545 rp~e~v~iinisv 557 (558)
T KOG0882|consen 545 RPYEDVKIINISV 557 (558)
T ss_pred CCCCceeEEEEec
Confidence 6667777765543
No 18
>cd01926 cyclophilin_ABH_like cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain. This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. These enzymes have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. As cyclophilins, Human hCyP-A, human cyclophilin-B (hCyP-19), S. cerevisiae Cpr1 and C. elegans Cyp-3, are inhibited by the immunosuppressive drug cyclopsporin A (CsA). CsA binds to the PPIase active site. Cyp-3. S. cerevisiae Cpr1 interacts with the Rpd3 - Sin3 complex and in addition is a component of the Set3 complex. S. cerevisiae Cpr1 has also been shown to have a role in Zpr1p nuclear transport. Human cyclophilin H associates with the [U4/U6.U5] tri-snRNP particles of the spl
Probab=99.97 E-value=1.2e-29 Score=224.90 Aligned_cols=135 Identities=22% Similarity=0.302 Sum_probs=109.5
Q ss_pred EeceeEEEEECCCCChHHHHHHHHHhhC--C------CcCCceeeEeeeC--CcccCCCCCccCCCCCCCCccccccccc
Q 019343 167 TEYGTLHIKLFPECAPHSVAYILELLSL--R------HCAGCQFHRAESR--GQSWDIEGNHIKNAPYGPPFGLIQGTLE 236 (342)
Q Consensus 167 T~~G~I~IeL~~d~AP~tv~nFl~L~~~--g------~Ydg~~F~Rv~~~--~q~GD~~g~~i~~~q~G~p~~~iqGg~~ 236 (342)
++.|+|+||||++.||++|+||++||++ + ||+++.|||++++ +|+||+... ...|+.+
T Consensus 12 ~~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~~~~~~Y~~~~f~Rv~~~~~iq~Gd~~~~------------~g~~~~~ 79 (164)
T cd01926 12 EPAGRIVMELFADVVPKTAENFRALCTGEKGKGGKPFGYKGSTFHRVIPDFMIQGGDFTRG------------NGTGGKS 79 (164)
T ss_pred eeceeEEEEEeCCCCCHHHHHHHHHhcccCCCcccccccCCCEEEEEeCCcEEEcCCccCC------------CCCCCCc
Confidence 5799999999999999999999999973 4 8999999999988 888776521 1233444
Q ss_pred cCCCccCCCCCCCCCCCCCcEEEEeCCC-----CcEEEEcCCCCCCCCCceEEEEEEcccHHHHHHHhcCCCCCCCcCcc
Q 019343 237 ALGTAFKKIPREVCPSIRRGSVAWIGSG-----PEFFISLSNHEEWKNSYTVFGSVLPQNMEIVEKIAQLPTKSDVWNNI 311 (342)
Q Consensus 237 ~~g~~~~~ip~E~~~~~~rG~Vsma~sG-----sqFFItL~d~p~Ldg~~TVFG~Vv~eGmdVldkI~~~~td~~~~~~i 311 (342)
.++..+++. .....|.++|+|+|++.+ |||||++++.++||++|||||+|+ +|||||++|++++++ ++
T Consensus 80 ~~g~~~~~e-~~~~~h~~~G~lsma~~~~~~~~sqFfIt~~~~~~Ld~~~tvFG~V~-~G~dvl~~i~~~~~~-~~---- 152 (164)
T cd01926 80 IYGEKFPDE-NFKLKHTGPGLLSMANAGPNTNGSQFFITTVKTPWLDGKHVVFGKVV-EGMDVVKKIENVGSG-NG---- 152 (164)
T ss_pred ccCCccCCC-CccccCCCccEEEeeECCCCCcccEEEEEeCCCCccCCcccEEEEEE-EcHHHHHHHHcCCCC-CC----
Confidence 555555432 222456689999999854 899999999999999999999999 999999999999998 65
Q ss_pred ccccccCCeEEE
Q 019343 312 NVTVLKKPVPLR 323 (342)
Q Consensus 312 ~v~v~~~PV~i~ 323 (342)
.|.++|.|.
T Consensus 153 ---~P~~~i~I~ 161 (164)
T cd01926 153 ---KPKKKVVIA 161 (164)
T ss_pred ---CCcCCeEEE
Confidence 556677665
No 19
>KOG0880 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=6.3e-30 Score=229.78 Aligned_cols=137 Identities=24% Similarity=0.305 Sum_probs=119.8
Q ss_pred EeceeEEEEECCCCChHHHHHHHHHhhCC----CcCCceeeEeeeC--CcccCCCCCccCCCCCCCCccccccccccCCC
Q 019343 167 TEYGTLHIKLFPECAPHSVAYILELLSLR----HCAGCQFHRAESR--GQSWDIEGNHIKNAPYGPPFGLIQGTLEALGT 240 (342)
Q Consensus 167 T~~G~I~IeL~~d~AP~tv~nFl~L~~~g----~Ydg~~F~Rv~~~--~q~GD~~g~~i~~~q~G~p~~~iqGg~~~~g~ 240 (342)
-..|+|+|.||++.+|+||+||.+||.++ .|.|++||||+++ ||+||.... -+.|+.++||.
T Consensus 51 ~~~grIvigLfG~~vPKTV~NF~~l~~~~~~~~gY~gS~FhRVi~nfmIQGGd~t~g------------~gtGg~SIyG~ 118 (217)
T KOG0880|consen 51 EPVGRIVIGLFGKVVPKTVENFRALATSGEKGYGYKGSKFHRVIPNFMIQGGDFTKG------------DGTGGKSIYGE 118 (217)
T ss_pred EeccEEEEEeccccchHHHHHHHHHHccCCCCcccCCceeeeeecCceeecCccccC------------CCCCCeEeecC
Confidence 35799999999999999999999999843 5999999999998 888888741 24678899999
Q ss_pred ccCCCCCCCCCCCCCcEEEEeCC-----CCcEEEEcCCCCCCCCCceEEEEEEcccHHHHHHHhcCCCCCCCcCcccccc
Q 019343 241 AFKKIPREVCPSIRRGSVAWIGS-----GPEFFISLSNHEEWKNSYTVFGSVLPQNMEIVEKIAQLPTKSDVWNNINVTV 315 (342)
Q Consensus 241 ~~~~ip~E~~~~~~rG~Vsma~s-----GsqFFItL~d~p~Ldg~~TVFG~Vv~eGmdVldkI~~~~td~~~~~~i~v~v 315 (342)
.|++ ++..+.|.++|.||||+. ||||||++...++||++|+|||+|+ +||++|.+|+.++||.++ .
T Consensus 119 ~F~D-ENf~LkH~rpG~lSMAn~GpDtNGsQFfItT~~t~wLDGkhVVFGqVl-~Gmdvv~~Ie~~~TD~~d-------k 189 (217)
T KOG0880|consen 119 KFPD-ENFKLKHDRPGRLSMANAGPDTNGSQFFITTVKTPWLDGKHVVFGQVL-EGMDVVRKIENVKTDERD-------K 189 (217)
T ss_pred CCCC-ccceeecCCCceEeeeccCCCCCCceEEEEecCCccccCceeEEeeeh-hhHHHHHHHHhcccCCCC-------C
Confidence 9977 566678999999999994 5899999999999999999999999 999999999999999998 4
Q ss_pred ccCCeEEEE
Q 019343 316 LKKPVPLRL 324 (342)
Q Consensus 316 ~~~PV~i~~ 324 (342)
|.+++.|.-
T Consensus 190 P~e~v~I~~ 198 (217)
T KOG0880|consen 190 PLEDVVIAN 198 (217)
T ss_pred ccccEEEee
Confidence 556666643
No 20
>PTZ00221 cyclophilin; Provisional
Probab=99.96 E-value=3.2e-29 Score=235.59 Aligned_cols=145 Identities=19% Similarity=0.244 Sum_probs=116.8
Q ss_pred CCccEEEEEEe-----ceeEEEEECCCCChHHHHHHHHHhhCC-----------CcCCceeeEeeeC---CcccCCCCCc
Q 019343 158 KGQGIVGLETE-----YGTLHIKLFPECAPHSVAYILELLSLR-----------HCAGCQFHRAESR---GQSWDIEGNH 218 (342)
Q Consensus 158 ~~~~~V~l~T~-----~G~I~IeL~~d~AP~tv~nFl~L~~~g-----------~Ydg~~F~Rv~~~---~q~GD~~g~~ 218 (342)
..+..|.|+|+ .|+|+|+||.+.||+||+||++||++. +|+|+.||||+++ +|+||+.+.
T Consensus 50 ~~~~rVfldisig~~~~GrIvIELf~d~aP~T~eNF~~Lc~g~~g~~~~~g~k~~Y~gt~FhRVi~~~f~iqgGD~~~~- 128 (249)
T PTZ00221 50 QNSCRAFLDISIGDVLAGRLVFELFEDVVPETVENFRALITGSCGIDTNTGVKLDYLYTPVHHVDRNNNIIVLGELDSF- 128 (249)
T ss_pred CCCCEEEEEEeeCCeecceEEEEEeCCCCcHHHHHHHHHhhcccccccccCcccccCCCEEEEEeCCCCEEEeCCCCCC-
Confidence 34678999987 567999999999999999999999742 3999999999863 676665531
Q ss_pred cCCCCCCCCccccccccccCCCccCCCCCCCCCCCCCcEEEEeCCC-----CcEEEEcCCCCCCCCCceEEEEEEcccHH
Q 019343 219 IKNAPYGPPFGLIQGTLEALGTAFKKIPREVCPSIRRGSVAWIGSG-----PEFFISLSNHEEWKNSYTVFGSVLPQNME 293 (342)
Q Consensus 219 i~~~q~G~p~~~iqGg~~~~g~~~~~ip~E~~~~~~rG~Vsma~sG-----sqFFItL~d~p~Ldg~~TVFG~Vv~eGmd 293 (342)
+.+.+|..|++. ....+|+++|+|+|+++| |||||++.+.|+||++|+|||+|+ +||+
T Consensus 129 ---------------g~s~~G~~f~dE-~~~~~h~~~G~LsMan~GpntngSQFfITl~~~p~LDgk~vVFGrVv-eGmd 191 (249)
T PTZ00221 129 ---------------NVSSTGTPIADE-GYRHRHTERGLLTMISEGPHTSGSVFGITLGPSPSLDFKQVVFGKAV-DDLS 191 (249)
T ss_pred ---------------CccCCCCcccCc-cccccCCCCCEEEeCcCCCCCccceEEEECCCCCccCCCceEEEEEE-eCHH
Confidence 223455556542 223567899999999854 799999999999999999999999 9999
Q ss_pred HHHHHhcCCCCCCCcCccccccccCCeEEEEEec
Q 019343 294 IVEKIAQLPTKSDVWNNINVTVLKKPVPLRLRRL 327 (342)
Q Consensus 294 VldkI~~~~td~~~~~~i~v~v~~~PV~i~~~r~ 327 (342)
||++|++++++.++ .|.+||.|..+-+
T Consensus 192 Vv~kIe~v~~d~~g-------rP~~~V~I~~Cgv 218 (249)
T PTZ00221 192 LLEKLESLPLDDVG-------RPLLPVTVSFCGA 218 (249)
T ss_pred HHHHHHcCCcCCCC-------CCCCCeEEEECeE
Confidence 99999999998766 6678888876533
No 21
>KOG0885 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.1e-29 Score=245.61 Aligned_cols=149 Identities=25% Similarity=0.287 Sum_probs=129.9
Q ss_pred cccccceecCCccEEEEEEeceeEEEEECCCCChHHHHHHHHHhhCCCcCCceeeEeeeC--CcccCCCCCccCCCCCCC
Q 019343 149 MWTSGLIFGKGQGIVGLETEYGTLHIKLFPECAPHSVAYILELLSLRHCAGCQFHRAESR--GQSWDIEGNHIKNAPYGP 226 (342)
Q Consensus 149 ~wtSG~~~~~~~~~V~l~T~~G~I~IeL~~d~AP~tv~nFl~L~~~g~Ydg~~F~Rv~~~--~q~GD~~g~~i~~~q~G~ 226 (342)
|-|+.++.+..++.|++.|+.|+|.||||+.+||++|.||++||..|||+|+.|||++++ +|+| +
T Consensus 1 ms~~~~~EP~ttgkvil~TT~G~I~iELW~kE~P~acrnFiqKOGegyy~nt~fhrlvp~f~~Qgg-------------d 67 (439)
T KOG0885|consen 1 MSTSYNLEPPTTGKVILKTTKGDIDIELWAKECPKACRNFIQLCLEGYYDNTEFHRLVPGFLVQGG-------------D 67 (439)
T ss_pred CCcccccCCCccceEEEEeccCceeeeehhhhhhHHHHHHHHHHHhccccCceeeeeccchhcccC-------------C
Confidence 346677888999999999999999999999999999999999999999999999999766 5554 4
Q ss_pred CccccccccccCCCccCCCCCCCCCCCCCcEEEEeCC-----CCcEEEEcCCCCCCCCCceEEEEEEcccHHHHHHHhcC
Q 019343 227 PFGLIQGTLEALGTAFKKIPREVCPSIRRGSVAWIGS-----GPEFFISLSNHEEWKNSYTVFGSVLPQNMEIVEKIAQL 301 (342)
Q Consensus 227 p~~~iqGg~~~~g~~~~~ip~E~~~~~~rG~Vsma~s-----GsqFFItL~d~p~Ldg~~TVFG~Vv~eGmdVldkI~~~ 301 (342)
|++.+.||.++||.+|++.-..-....+||+|+||+. ||||||||++.|+|+++||+||+|+++.++.+.+|..+
T Consensus 68 p~~~gtGgesiyg~~fadE~h~Rlrf~rrGlvgmana~~~~ngsqFfftl~~~~el~nk~tiFGKVtGdtIYn~lri~e~ 147 (439)
T KOG0885|consen 68 PTGTGTGGESIYGRPFADEFHPRLRFNRRGLVGMANAGNDDNGSQFFFTLGDTPELNNKHTIFGKVTGDTIYNMLRISEV 147 (439)
T ss_pred CCCCCCCccccccccchhhcCcceeeeccceeeecccCCCCCCceEEEEecCChHhcccCceeeeecchhhhhhhhhccc
Confidence 4456789999999999773333334568999999984 58999999999999999999999999999999999999
Q ss_pred CCCCCCcCc
Q 019343 302 PTKSDVWNN 310 (342)
Q Consensus 302 ~td~~~~~~ 310 (342)
+++.+.+|+
T Consensus 148 eida~~Rp~ 156 (439)
T KOG0885|consen 148 EIDADDRPV 156 (439)
T ss_pred ccccccCCC
Confidence 999876554
No 22
>PF00160 Pro_isomerase: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; InterPro: IPR002130 Cyclophilin [] is the major high-affinity binding protein in vertebrates for the immunosuppressive drug cyclosporin A (CSA), but is also found in other organisms. It exhibits a peptidyl-prolyl cis-trans isomerase activity (5.2.1.8 from EC) (PPIase or rotamase). PPIase is an enzyme that accelerates protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides []. It is probable that CSA mediates some of its effects via an forming a tight complex with cyclophilin that inhibits the phosphatase activity of calcineurin [], []. Cyclophilin A is a cytosolic and highly abundant protein. The protein belongs to a family of isozymes, including cyclophilins B and C, and natural killer cell cyclophilin-related protein [, , ]. Major isoforms have been found throughout the cell, including the ER, and some are even secreted. The sequences of the different forms of cyclophilin-type PPIases are well conserved. Note: FKBP's, a family of proteins that bind the immunosuppressive drug FK506, are also PPIases, but their sequence is not at all related to that of cyclophilin (see IPR001179 from INTERPRO).; GO: 0003755 peptidyl-prolyl cis-trans isomerase activity, 0006457 protein folding; PDB: 1Z81_A 1IHG_A 1IIP_A 3PMP_B 3O7T_A 2B71_A 1QNG_A 1QNH_A 2HQJ_A 2RMC_G ....
Probab=99.96 E-value=8.1e-29 Score=215.72 Aligned_cols=140 Identities=34% Similarity=0.490 Sum_probs=114.3
Q ss_pred EEEEEe-ceeEEEEECCCCChHHHHHHHHHhhCCCcCCceeeEeeeC--CcccCCCCCccCCCCCCCCccccccccccCC
Q 019343 163 VGLETE-YGTLHIKLFPECAPHSVAYILELLSLRHCAGCQFHRAESR--GQSWDIEGNHIKNAPYGPPFGLIQGTLEALG 239 (342)
Q Consensus 163 V~l~T~-~G~I~IeL~~d~AP~tv~nFl~L~~~g~Ydg~~F~Rv~~~--~q~GD~~g~~i~~~q~G~p~~~iqGg~~~~g 239 (342)
|.|+|+ .|+|+|+||++.||++|+||++||+.++|+|+.|||++++ +|+||+.+....+ ... ...+
T Consensus 2 ~~i~t~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~y~g~~f~ri~~~~~i~~G~~~~~~~~~----------~~~-~~~~ 70 (155)
T PF00160_consen 2 VDIETSGLGRIVIELFGDEAPKTVENFLRLCTSGFYDGTKFHRIIPNFVIQGGDPTGNGGYG----------RED-STGG 70 (155)
T ss_dssp EEEEETTEEEEEEEEETTTSHHHHHHHHHHHHTTSSTTEBEEEEETTTEEEESSTTTSSSST----------SEE-BTTB
T ss_pred EEEEeCCccCEEEEEeCCCCcHHHHhhehhhcccccCCceeecccccceeeeeeccCCCCcc----------ccc-ccCc
Confidence 689997 9999999999999999999999999999999999999988 7888877542100 000 1112
Q ss_pred CccCCCCCCC---CCCCCCcEEEEeCC-------CCcEEEEcCCCCCCCCCceEEEEEEcccHHHHHHHhcCCCCCCCcC
Q 019343 240 TAFKKIPREV---CPSIRRGSVAWIGS-------GPEFFISLSNHEEWKNSYTVFGSVLPQNMEIVEKIAQLPTKSDVWN 309 (342)
Q Consensus 240 ~~~~~ip~E~---~~~~~rG~Vsma~s-------GsqFFItL~d~p~Ldg~~TVFG~Vv~eGmdVldkI~~~~td~~~~~ 309 (342)
. .+++|. ...+++|+|+|++. +|||||+|++.++||++|+|||+|+ +||+||++|+++++++
T Consensus 71 ~---~~~~E~~~~~~~~~~G~v~~~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~V~-~G~~vl~~i~~~~~~~---- 142 (155)
T PF00160_consen 71 E---PIPDEFNPSLLKHRRGLVSMARSGKDPNSNGSQFFITLSDAPHLDGKYTVFGRVI-EGMDVLDKIEAGPTDE---- 142 (155)
T ss_dssp S---CBSSSGBTTSSSSSTTEEEEEBSSSSTTEBSSEEEEESSCGGGGTTTSEEEEEEE-EHHHHHHHHHTSBBTT----
T ss_pred c---ccccccccccccccceeeeecccccCCCCCCceEEeeccCCCccccceeeeeEEe-hhHHHHHHHHCCCCCC----
Confidence 2 245565 34569999999974 4899999999999999999999999 9999999999988887
Q ss_pred ccccccccCCeEEEEEe
Q 019343 310 NINVTVLKKPVPLRLRR 326 (342)
Q Consensus 310 ~i~v~v~~~PV~i~~~r 326 (342)
.|.+||.|+.+.
T Consensus 143 -----~p~~~v~I~~cg 154 (155)
T PF00160_consen 143 -----RPKQDVTISSCG 154 (155)
T ss_dssp -----EBSSTEEEEEEE
T ss_pred -----ccCCCeEEEEeE
Confidence 456788887654
No 23
>PTZ00060 cyclophilin; Provisional
Probab=99.96 E-value=7.6e-29 Score=223.83 Aligned_cols=137 Identities=25% Similarity=0.310 Sum_probs=110.6
Q ss_pred EeceeEEEEECCCCChHHHHHHHHHhh---------CCCcCCceeeEeeeC--CcccCCCCCccCCCCCCCCcccccccc
Q 019343 167 TEYGTLHIKLFPECAPHSVAYILELLS---------LRHCAGCQFHRAESR--GQSWDIEGNHIKNAPYGPPFGLIQGTL 235 (342)
Q Consensus 167 T~~G~I~IeL~~d~AP~tv~nFl~L~~---------~g~Ydg~~F~Rv~~~--~q~GD~~g~~i~~~q~G~p~~~iqGg~ 235 (342)
++.|+|+||||.+.||++|+||++||+ .++|+|+.||||+++ +|+||+... ...++.
T Consensus 27 ~~~G~ivIeL~~d~aP~t~~nF~~L~~g~~~~~~g~~~~Y~~~~fhRvi~~~~iqgGd~~~~------------~g~~g~ 94 (183)
T PTZ00060 27 APAGRIVFELFSDVTPKTAENFRALCIGDKVGSSGKNLHYKGSIFHRIIPQFMCQGGDITNH------------NGTGGE 94 (183)
T ss_pred EeCceEEEEEcCCCCcHHHHHHHHHhcCCcccccCcccccCCeEEEEEcCCCeEEeCCccCC------------CCCCCC
Confidence 467999999999999999999999996 569999999999988 788876531 123444
Q ss_pred ccCCCccCCCCCCCCCCCCCcEEEEeCC-----CCcEEEEcCCCCCCCCCceEEEEEEcccHHHHHHHhcCCCCCCCcCc
Q 019343 236 EALGTAFKKIPREVCPSIRRGSVAWIGS-----GPEFFISLSNHEEWKNSYTVFGSVLPQNMEIVEKIAQLPTKSDVWNN 310 (342)
Q Consensus 236 ~~~g~~~~~ip~E~~~~~~rG~Vsma~s-----GsqFFItL~d~p~Ldg~~TVFG~Vv~eGmdVldkI~~~~td~~~~~~ 310 (342)
+.++..+++. ....+|.++|+|+|+++ +|||||++++.|+||++|||||+|+ +|||||++|++++++. +
T Consensus 95 ~~~g~~~~~e-~~~~~h~~~G~lsma~~g~~~~~sqFfIt~~~~~~Ldg~~tvFG~Vi-~G~dvl~~I~~~~~~~-~--- 168 (183)
T PTZ00060 95 SIYGRKFTDE-NFKLKHDQPGLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGKVI-EGMEVVRAMEKEGTQS-G--- 168 (183)
T ss_pred cccccccCCc-cccccCCCCCEEEeccCCCCCCcceEEEEeCCCcccCCCccEEEEEE-ccHHHHHHHHccCCCC-C---
Confidence 5555555432 22345667999999985 4899999999999999999999999 9999999999988843 3
Q ss_pred cccccccCCeEEEEE
Q 019343 311 INVTVLKKPVPLRLR 325 (342)
Q Consensus 311 i~v~v~~~PV~i~~~ 325 (342)
.|..||.|..+
T Consensus 169 ----~P~~~v~I~~c 179 (183)
T PTZ00060 169 ----YPKKPVVVTDC 179 (183)
T ss_pred ----CCcCCeEEEEe
Confidence 57788888764
No 24
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=2.6e-28 Score=234.89 Aligned_cols=135 Identities=27% Similarity=0.434 Sum_probs=114.3
Q ss_pred cEEEEEEeceeEEEEECCCCChHHHHHHHHHhhCCCcCCceeeEeeeC--CcccCCCCCccCCCCCCCCccccccccccC
Q 019343 161 GIVGLETEYGTLHIKLFPECAPHSVAYILELLSLRHCAGCQFHRAESR--GQSWDIEGNHIKNAPYGPPFGLIQGTLEAL 238 (342)
Q Consensus 161 ~~V~l~T~~G~I~IeL~~d~AP~tv~nFl~L~~~g~Ydg~~F~Rv~~~--~q~GD~~g~~i~~~q~G~p~~~iqGg~~~~ 238 (342)
++|+|+|++|+|+|+||.+.+|.+|.|||+||+.+||+.|.||.|..+ +| +|+|++++.||.++|
T Consensus 1 MsVlieTtlGDlvIDLf~~erP~~clNFLKLCk~KYYN~clfh~vq~~f~aQ-------------TGDPtGtG~GG~si~ 67 (479)
T KOG0415|consen 1 MSVLIETTLGDLVIDLFVKERPRTCLNFLKLCKIKYYNFCLFHTVQRDFTAQ-------------TGDPTGTGDGGESIY 67 (479)
T ss_pred CcEEEEeecccEEeeeecccCcHHHHHHHHHHhHhhcccceeeeccccceee-------------cCCCCCCCCCcceee
Confidence 579999999999999999999999999999999999999999999765 55 455555667887777
Q ss_pred CCccCC----CCCCCCC---CCCCcEEEEeCCC-----CcEEEEcCCC-CCCCCCceEEEEEEcccHHHHHHHhcCCCCC
Q 019343 239 GTAFKK----IPREVCP---SIRRGSVAWIGSG-----PEFFISLSNH-EEWKNSYTVFGSVLPQNMEIVEKIAQLPTKS 305 (342)
Q Consensus 239 g~~~~~----ip~E~~~---~~~rG~Vsma~sG-----sqFFItL~d~-p~Ldg~~TVFG~Vv~eGmdVldkI~~~~td~ 305 (342)
+.-+.+ ...|.++ |.+.|+|+|+++| |||||||+++ ..||++|||||+|+ |||++|.+|+..-+|+
T Consensus 68 ~~lyG~q~rffeaE~~p~l~Hsk~G~vsmvs~g~n~~gSQF~iTlgenLdyLDg~htvfGqV~-EG~dtl~kiNea~vD~ 146 (479)
T KOG0415|consen 68 GVLYGEQARFFEAEFLPKLKHSKMGTVSMVSAGENLNGSQFFITLGENLDYLDGKHTVFGQVA-EGFDTLTKINEAIVDP 146 (479)
T ss_pred eecccccchhhhhhhcccccccccceEEeecCCcccccceEEEEccccccccccccceeeehh-hhHHHHHHHHHHhcCC
Confidence 654422 2345554 5689999999964 8999999887 58999999999999 9999999999999999
Q ss_pred CCcC
Q 019343 306 DVWN 309 (342)
Q Consensus 306 ~~~~ 309 (342)
+..|
T Consensus 147 ~~rP 150 (479)
T KOG0415|consen 147 KNRP 150 (479)
T ss_pred CCCc
Confidence 8733
No 25
>cd01924 cyclophilin_TLP40_like cyclophilin_TLP40_like: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) similar ot the Spinach thylakoid lumen protein TLP40. Compared to the archetypal cyclophilin Human cyclophilin A, these proteins have similar peptidylprolyl cis- trans isomerase activity and reduced affinity for cyclosporin A. Spinach TLP40 has been shown to have a dual function as a folding catalyst and regulator of dephosphorylation.
Probab=99.95 E-value=9e-28 Score=215.74 Aligned_cols=135 Identities=24% Similarity=0.349 Sum_probs=101.3
Q ss_pred EEeceeEEEEECCCCChHHHHHHHHHhhCCCcCCceeeEeeeC--CcccCCCCCccCC--CCCCC----Ccccc--cccc
Q 019343 166 ETEYGTLHIKLFPECAPHSVAYILELLSLRHCAGCQFHRAESR--GQSWDIEGNHIKN--APYGP----PFGLI--QGTL 235 (342)
Q Consensus 166 ~T~~G~I~IeL~~d~AP~tv~nFl~L~~~g~Ydg~~F~Rv~~~--~q~GD~~g~~i~~--~q~G~----p~~~i--qGg~ 235 (342)
+|++|+|+|+||++.||++|+||++||+.+||+++.||||+++ +|+||+.+..... ...|. |..+. ..+.
T Consensus 3 ~T~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Ydg~~FhRVi~~fviQgGdp~~~~~~~~~~~~~~~~~~p~e~~~~~~~~ 82 (176)
T cd01924 3 ATDNGTITIVLDGYNAPVTAGNFVDLVERGFYDGMEFHRVEGGFVVQTGDPQGKNPGFPDPETGKSRTIPLEIKPEGQKQ 82 (176)
T ss_pred ccccceEEEEEcCCCCCHHHHHHHHHHHhCCcCCCEEEEecCCcEEEecCCCCCCCCcccccccccccccceecccCCCC
Confidence 5899999999999999999999999999999999999999998 9999998642100 00010 00000 0122
Q ss_pred ccCCCccC----CCCCCCCCCCCCcEEEEeCC-------CCcEEEEcC-------CCCCCCCCceEEEEEEcccHHHHHH
Q 019343 236 EALGTAFK----KIPREVCPSIRRGSVAWIGS-------GPEFFISLS-------NHEEWKNSYTVFGSVLPQNMEIVEK 297 (342)
Q Consensus 236 ~~~g~~~~----~ip~E~~~~~~rG~Vsma~s-------GsqFFItL~-------d~p~Ldg~~TVFG~Vv~eGmdVldk 297 (342)
+.++..+. .......+++++|+||||++ +|||||++. +.++||++|||||+|+ +|||||++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~G~laMa~~~~~~ns~~SQFfI~~~~~~~~~~~~~~Ldg~ytVFG~Vv-eG~dvl~~ 161 (176)
T cd01924 83 PVYGKTLEEAGRYDEQPVLPFNAFGAIAMARTEFDPNSASSQFFFLLKDNELTPSRNNVLDGRYAVFGYVT-DGLDILRE 161 (176)
T ss_pred CccCcccccccccccccccccCCCCeEEEccCCCCCCCccceEEEEeccccccCCCCCccCCCceEEEEEe-cCHHHHHh
Confidence 33333321 11122246789999999974 479999998 6899999999999999 99999999
Q ss_pred HhcC
Q 019343 298 IAQL 301 (342)
Q Consensus 298 I~~~ 301 (342)
|+..
T Consensus 162 I~~g 165 (176)
T cd01924 162 LKVG 165 (176)
T ss_pred hcCC
Confidence 9766
No 26
>KOG0879 consensus U-snRNP-associated cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1e-27 Score=204.45 Aligned_cols=145 Identities=23% Similarity=0.318 Sum_probs=122.6
Q ss_pred CccEEEEE-----EeceeEEEEECCCCChHHHHHHHHHhhCCC--------cCCceeeEeeeC--CcccCCCCCccCCCC
Q 019343 159 GQGIVGLE-----TEYGTLHIKLFPECAPHSVAYILELLSLRH--------CAGCQFHRAESR--GQSWDIEGNHIKNAP 223 (342)
Q Consensus 159 ~~~~V~l~-----T~~G~I~IeL~~d~AP~tv~nFl~L~~~g~--------Ydg~~F~Rv~~~--~q~GD~~g~~i~~~q 223 (342)
.++.|-++ +..|+|.||||.|.+|+|++||+++|.+.| |+++.||||+++ +|+||.-..
T Consensus 9 ~nPvVF~dv~igg~~~GrikieLFadivPkTAENFRQFCTGE~r~~g~PiGYK~~tFHRvIkdFMiQgGDFv~g------ 82 (177)
T KOG0879|consen 9 NNPVVFFDVAIGGRPIGRIKIELFADIVPKTAENFRQFCTGEYRKDGVPIGYKNSTFHRVIKDFMIQGGDFVNG------ 82 (177)
T ss_pred CCCeEEEEEeeCCEEcceEEEEEeeccChhhHHHHHhhcccccccCCccccccccchHHHhhhheeccCceecC------
Confidence 34455554 468999999999999999999999998764 999999999988 787776531
Q ss_pred CCCCccccccccccCCCccCCCCCCCCCCCCCcEEEEeCCCC-----cEEEEcCCCCCCCCCceEEEEEEcccHHHHHHH
Q 019343 224 YGPPFGLIQGTLEALGTAFKKIPREVCPSIRRGSVAWIGSGP-----EFFISLSNHEEWKNSYTVFGSVLPQNMEIVEKI 298 (342)
Q Consensus 224 ~G~p~~~iqGg~~~~g~~~~~ip~E~~~~~~rG~Vsma~sGs-----qFFItL~d~p~Ldg~~TVFG~Vv~eGmdVldkI 298 (342)
-+.|-.++|+..|++ ++..++|..+|+|+||++|+ ||||+.+...+||++|+|||+|+ +||.++++|
T Consensus 83 ------DGtG~~sIy~~~F~D-ENFtlkH~~PGlLSMANsG~~tNGCQFFITcakcdfLD~KHVVFGrvl-dGlli~rkI 154 (177)
T KOG0879|consen 83 ------DGTGVASIYGSTFPD-ENFTLKHDGPGLLSMANSGKDTNGCQFFITCAKCDFLDGKHVVFGRVL-DGLLIMRKI 154 (177)
T ss_pred ------CCceEEEEcCCCCCC-cceeeecCCCceeeccccCCCCCCceEEEEecccccccCceEEEeeee-hhhhhhhhh
Confidence 123456789999977 45567899999999999874 99999999999999999999999 999999999
Q ss_pred hcCCCCCCCcCccccccccCCeEEEE
Q 019343 299 AQLPTKSDVWNNINVTVLKKPVPLRL 324 (342)
Q Consensus 299 ~~~~td~~~~~~i~v~v~~~PV~i~~ 324 (342)
+++|+-++. .|+-||+|..
T Consensus 155 Envp~G~Nn-------kPKl~v~i~q 173 (177)
T KOG0879|consen 155 ENVPTGPNN-------KPKLPVVIVQ 173 (177)
T ss_pred hcCCCCCCC-------CCCCcEEEee
Confidence 999999997 6677887754
No 27
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=9.6e-25 Score=199.51 Aligned_cols=126 Identities=22% Similarity=0.324 Sum_probs=112.2
Q ss_pred EeceeEEEEECCCCChHHHHHHHHHhh--CCC-cCCceeeEeeeC--CcccCCCCCccCCCCCCCCccccccccccCCCc
Q 019343 167 TEYGTLHIKLFPECAPHSVAYILELLS--LRH-CAGCQFHRAESR--GQSWDIEGNHIKNAPYGPPFGLIQGTLEALGTA 241 (342)
Q Consensus 167 T~~G~I~IeL~~d~AP~tv~nFl~L~~--~g~-Ydg~~F~Rv~~~--~q~GD~~g~~i~~~q~G~p~~~iqGg~~~~g~~ 241 (342)
-..|+|+++|+.|..|++.+||..||. .|| |+|++|||+|+. .|+||.... .+.||.++||..
T Consensus 148 ~~~Gri~~~lrtdv~Pmtaenfr~Lctge~gfgykgssfhriip~fmcqggdftn~------------ngtggksiygkk 215 (298)
T KOG0111|consen 148 DRAGRIVMLLRTDVVPMTAENFRCLCTGEAGFGYKGSSFHRIIPKFMCQGGDFTNG------------NGTGGKSIYGKK 215 (298)
T ss_pred cccceEEEeecccCChhhhhhhhhhccccCccCccccchhhhhhhhhccCCccccC------------CCCCCccccccc
Confidence 457999999999999999999999995 455 999999999998 888888753 357888999999
Q ss_pred cCCCCCCCCCCCCCcEEEEeCCC-----CcEEEEcCCCCCCCCCceEEEEEEcccHHHHHHHhcCCCCCC
Q 019343 242 FKKIPREVCPSIRRGSVAWIGSG-----PEFFISLSNHEEWKNSYTVFGSVLPQNMEIVEKIAQLPTKSD 306 (342)
Q Consensus 242 ~~~ip~E~~~~~~rG~Vsma~sG-----sqFFItL~d~p~Ldg~~TVFG~Vv~eGmdVldkI~~~~td~~ 306 (342)
|.+ ++..++|..+|+|+||++| |||||+.....+||++|+|||+|+ +||+||+++++..+.+.
T Consensus 216 fdd-enf~lkht~pgtlsmansgantngsqffict~ktdwldgkhvvfghv~-eg~~vvrq~e~qgsksg 283 (298)
T KOG0111|consen 216 FDD-ENFTLKHTMPGTLSMANSGANTNGSQFFICTEKTDWLDGKHVVFGHVV-EGMNVVRQVEQQGSKSG 283 (298)
T ss_pred ccc-cceeeecCCCceeeccccCCCCCCceEEEEecccccccCceeEEeeec-chHHHHHHHHhccCCCC
Confidence 976 5667788899999999964 899999999999999999999999 99999999999887764
No 28
>KOG0865 consensus Cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=8.1e-17 Score=143.53 Aligned_cols=125 Identities=22% Similarity=0.339 Sum_probs=102.9
Q ss_pred EeceeEEEEECCCCChHHHHHHHHHhhCC---CcCCceeeEeee---C--CcccCCCCCccCCCCCCCCccccccccccC
Q 019343 167 TEYGTLHIKLFPECAPHSVAYILELLSLR---HCAGCQFHRAES---R--GQSWDIEGNHIKNAPYGPPFGLIQGTLEAL 238 (342)
Q Consensus 167 T~~G~I~IeL~~d~AP~tv~nFl~L~~~g---~Ydg~~F~Rv~~---~--~q~GD~~g~~i~~~q~G~p~~~iqGg~~~~ 238 (342)
.+.|+++++|+.|..|+|++||..|+... -|++..|||++. + .|+||.... .+.||.++|
T Consensus 15 ~p~gr~~~~l~ad~~Pktaenf~al~tgekg~~yk~s~fhr~~~~~~~fm~qggDft~h------------ngtggkSiy 82 (167)
T KOG0865|consen 15 EPLGRIVFELFADKIPKTAENFRALCTGEKGFGYKGSCFHRLIPIIPGFMCQGGDFTCH------------NGTGGKSIY 82 (167)
T ss_pred ccccccceecccccCcchHhhhhhcccCCCccccccchhhhccccccceeeccCccccc------------CCccceEec
Confidence 56889999999999999999999998632 399999999432 2 666666431 236777889
Q ss_pred CCccCCCCCCCCCCCCCcEEEEeCCC-----CcEEEEcCCCCCCCCCceEEEEEEcccHHHHHHHhcCCCCC
Q 019343 239 GTAFKKIPREVCPSIRRGSVAWIGSG-----PEFFISLSNHEEWKNSYTVFGSVLPQNMEIVEKIAQLPTKS 305 (342)
Q Consensus 239 g~~~~~ip~E~~~~~~rG~Vsma~sG-----sqFFItL~d~p~Ldg~~TVFG~Vv~eGmdVldkI~~~~td~ 305 (342)
+..|++ ++..++|..+|.|+|||.| |||||+++...+||++|+|||+|. +||+++++|+......
T Consensus 83 ~ekF~D-enFilkhtgpGiLSmaNagpntngsqffictaktewLdgkhVVfGkv~-eGm~iv~a~e~~gs~~ 152 (167)
T KOG0865|consen 83 GEKFDD-ENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVK-EGMDIVEAMERFGSRN 152 (167)
T ss_pred ccccCC-cCcEEecCCCCeeehhhcCCCccccEEEEEccccccccCceeEcCceE-cccchhhhhhccCCcC
Confidence 998865 5666788889999999965 799999999999999999999999 9999999999955444
No 29
>PF14295 PAN_4: PAN domain; PDB: 2YIL_E 2YIP_C 2YIO_A.
Probab=98.17 E-value=9.7e-07 Score=62.40 Aligned_cols=51 Identities=29% Similarity=0.540 Sum_probs=19.1
Q ss_pred ccccccceecccccccCChHHHHHHHHhhccCCCCCCCCceeEEcCCCCCCcccccceeec
Q 019343 71 LEFWGGAVKWGSDFKFNSSRMCCEACKAMCTGNDGPCLCDTWVFCGNKKSCGSRFGECWLK 131 (342)
Q Consensus 71 ~~~~g~~v~wg~~~~~~s~~~cc~~c~~~~~~~~~~~~cn~Wv~c~~~~~c~~~~~ecWLK 131 (342)
++|.|..+.+. .....|+++|+++|.+.. .|..|+|.+. ++.+..+.||||
T Consensus 1 ~d~~G~dl~~~-~~~~~s~~~C~~~C~~~~-------~C~~~~~~~~--~~~~~~~~C~LK 51 (51)
T PF14295_consen 1 TDYPGGDLRSF-PVTASSPEECQAACAADP-------GCQAFTFNPP--GCPSSSGRCYLK 51 (51)
T ss_dssp ------------------HHHHHHHHHTST-------T--EEEEETT--EE----------
T ss_pred Ccccccccccc-cccCCCHHHHHHHccCCC-------CCCEEEEECC--CcccccccccCC
Confidence 57889999887 348999999999999863 8999999996 344567899998
No 30
>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3. A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
Probab=96.68 E-value=0.0051 Score=63.28 Aligned_cols=96 Identities=25% Similarity=0.329 Sum_probs=66.3
Q ss_pred eEEEEECCCCChHHHHHHHHHhhCCCcC----CceeeEeeeCCcccCCCCCccCCCCCCCCccccccccccCCCccCCCC
Q 019343 171 TLHIKLFPECAPHSVAYILELLSLRHCA----GCQFHRAESRGQSWDIEGNHIKNAPYGPPFGLIQGTLEALGTAFKKIP 246 (342)
Q Consensus 171 ~I~IeL~~d~AP~tv~nFl~L~~~g~Yd----g~~F~Rv~~~~q~GD~~g~~i~~~q~G~p~~~iqGg~~~~g~~~~~ip 246 (342)
.+.+||.++ ||.++++|+.+.+.|.+. -.+|-+-. ..|| ..+|
T Consensus 202 y~evE~~~~-~p~s~EH~la~~~~G~~~Vd~~tsTfi~d~-----------------------~L~g---------~~~p 248 (503)
T TIGR03268 202 YVEVELDPN-APVSVEHFLALMEDGTFRVDYRTSTFISDD-----------------------SLRG---------LDKP 248 (503)
T ss_pred EEEEEEcCC-CChhHHHHHHHHhCCeEEEeeeecceEecc-----------------------cccC---------ccCC
Confidence 377888776 999999999999988621 11221110 1122 1234
Q ss_pred CCCCCCCCCcEEEEeCCCC---cEEEEcCCCCCCCCCceEEEEEEcccHHHHHHHhcC
Q 019343 247 REVCPSIRRGSVAWIGSGP---EFFISLSNHEEWKNSYTVFGSVLPQNMEIVEKIAQL 301 (342)
Q Consensus 247 ~E~~~~~~rG~Vsma~sGs---qFFItL~d~p~Ldg~~TVFG~Vv~eGmdVldkI~~~ 301 (342)
.|....-++|+|.+-+.|. ..||.-.+.+ -.-.|||+|+|+ .|||+++--...
T Consensus 249 ~En~~~R~rGtVTVRn~G~G~G~VYIYredr~-ss~sHtvVG~V~-~GiELid~a~~G 304 (503)
T TIGR03268 249 EENIEKRRRGAVTVRNSGVGEGRVYIYREDRP-SSLSHNVVGHVT-RGIELIDIAQEG 304 (503)
T ss_pred ccccCcccceeEEEEeeccCceeEEEEcCCCC-CCcccceeEEEe-cceeeeecccCC
Confidence 4544556799999999773 8999998854 234799999999 999998654443
No 31
>PRK00969 hypothetical protein; Provisional
Probab=96.64 E-value=0.0054 Score=63.29 Aligned_cols=94 Identities=30% Similarity=0.412 Sum_probs=65.5
Q ss_pred EEEEECCCCChHHHHHHHHHhhCCCc----CCceeeEeeeCCcccCCCCCccCCCCCCCCccccccccccCCCccCCCCC
Q 019343 172 LHIKLFPECAPHSVAYILELLSLRHC----AGCQFHRAESRGQSWDIEGNHIKNAPYGPPFGLIQGTLEALGTAFKKIPR 247 (342)
Q Consensus 172 I~IeL~~d~AP~tv~nFl~L~~~g~Y----dg~~F~Rv~~~~q~GD~~g~~i~~~q~G~p~~~iqGg~~~~g~~~~~ip~ 247 (342)
+.++|.++ ||.++++|+.+.+.|.+ .-.+|-+-. ..|| ..+|.
T Consensus 206 ~eve~~~~-~p~s~EH~la~~~~G~f~Vd~~tstfI~d~-----------------------~L~g---------~~~p~ 252 (508)
T PRK00969 206 VEVELDPG-APKSVEHFLALLEDGTFEVDFETSTFIADD-----------------------RLQG---------LKIPE 252 (508)
T ss_pred EEEEEcCC-CCchHHHHHHHHhCCeEEEeeeecceEeec-----------------------cccC---------ccCCc
Confidence 77888777 99999999999999862 122222210 1122 12344
Q ss_pred CCCCCCCCcEEEEeCCCC---cEEEEcCCCCCCCCCceEEEEEEcccHHHHHHHhc
Q 019343 248 EVCPSIRRGSVAWIGSGP---EFFISLSNHEEWKNSYTVFGSVLPQNMEIVEKIAQ 300 (342)
Q Consensus 248 E~~~~~~rG~Vsma~sGs---qFFItL~d~p~Ldg~~TVFG~Vv~eGmdVldkI~~ 300 (342)
|....-++|+|.+-+.|. .-||.-.+.+. .-.|+|+|+|+ .|||+++--..
T Consensus 253 En~~~R~~GtVTVRt~G~g~G~vYIyredr~s-s~sHtvVG~V~-~GiELi~~a~~ 306 (508)
T PRK00969 253 ENFEPRRRGTVTVRTAGVGVGKVYIYREDRPS-SLSHTVVGRVT-HGIELIDFAKE 306 (508)
T ss_pred cccCccccceEEEEeeccCceeEEEECCCCCC-CccceeEEEEe-cceeeeecccC
Confidence 544455799999999773 89999988542 34799999999 99999865444
No 32
>cd01100 APPLE_Factor_XI_like Subfamily of PAN/APPLE-like domains; present in plasma prekallikrein/coagulation factor XI, microneme antigen proteins, and a few prokaryotic proteins. PAN/APPLE domains fulfill diverse biological functions by mediating protein-protein or protein-carbohydrate interactions.
Probab=95.07 E-value=0.034 Score=42.54 Aligned_cols=57 Identities=26% Similarity=0.474 Sum_probs=43.6
Q ss_pred ccccc-ccccccccceecccccccCChHHHHHHHHhhccCCCCCCCCceeEEcCCCCCCcccccceeeccCCCCC
Q 019343 64 CCQGI-ENLEFWGGAVKWGSDFKFNSSRMCCEACKAMCTGNDGPCLCDTWVFCGNKKSCGSRFGECWLKKQKDVL 137 (342)
Q Consensus 64 ~c~~~-~~~~~~g~~v~wg~~~~~~s~~~cc~~c~~~~~~~~~~~~cn~Wv~c~~~~~c~~~~~ecWLK~~~~~~ 137 (342)
.|... .|++|+|.-+..- ...++++|+++|.+.+ .|..|.|=.. -+.||||.....+
T Consensus 4 ~C~~~~~~~~~~g~d~~~~---~~~s~~~Cq~~C~~~~-------~C~afT~~~~-------~~~C~lk~~~~~~ 61 (73)
T cd01100 4 SCFRQGSNVDFRGGDLSTV---FASSAEQCQAACTADP-------GCLAFTYNTK-------SKKCFLKSSEGTL 61 (73)
T ss_pred ccccccCCCccccCCccee---ecCCHHHHHHHcCCCC-------CceEEEEECC-------CCeEEcccCCCCc
Confidence 34444 4999999777533 4789999999999985 9999999644 3567999997433
No 33
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.95 E-value=0.033 Score=56.99 Aligned_cols=154 Identities=16% Similarity=0.092 Sum_probs=104.2
Q ss_pred ccceecCCccEEEEEEece----eEEEEECCCCChHHHHHHHHHhhCCCcCCceeeEeeeC--CcccCCCCCccCCCCCC
Q 019343 152 SGLIFGKGQGIVGLETEYG----TLHIKLFPECAPHSVAYILELLSLRHCAGCQFHRAESR--GQSWDIEGNHIKNAPYG 225 (342)
Q Consensus 152 SG~~~~~~~~~V~l~T~~G----~I~IeL~~d~AP~tv~nFl~L~~~g~Ydg~~F~Rv~~~--~q~GD~~g~~i~~~q~G 225 (342)
+|+=...--..+.+.|..| -|.|+|+.+-.|.-++-|..+|+.+|+++..|.+|... .|.+|..-..
T Consensus 90 nmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSi------- 162 (558)
T KOG0882|consen 90 NMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSI------- 162 (558)
T ss_pred hhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeec-------
Confidence 3333444445678888899 89999999999999999999999999999999999775 5555544210
Q ss_pred CCccccccccccCCCc--cCCCCCCC--CCCCCCcEEEEeC-----CCCcEEEEcCCCCCCCCCceEEEEEEcccHHHHH
Q 019343 226 PPFGLIQGTLEALGTA--FKKIPREV--CPSIRRGSVAWIG-----SGPEFFISLSNHEEWKNSYTVFGSVLPQNMEIVE 296 (342)
Q Consensus 226 ~p~~~iqGg~~~~g~~--~~~ip~E~--~~~~~rG~Vsma~-----sGsqFFItL~d~p~Ldg~~TVFG~Vv~eGmdVld 296 (342)
| +.|-.+-|..+ |.-...+. ...+.--++.+.. .+-+|++.-...+.+..+..|||++. .+=++++
T Consensus 163 D----~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~-KtGklvq 237 (558)
T KOG0882|consen 163 D----ISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVF-KTGKLVQ 237 (558)
T ss_pred c----ccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEe-ccchhhh
Confidence 0 01111112221 21111111 1233334444443 22488888888888889999999999 9999999
Q ss_pred HHhcCCCCCCCcCccccccccCCeEEEE
Q 019343 297 KIAQLPTKSDVWNNINVTVLKKPVPLRL 324 (342)
Q Consensus 297 kI~~~~td~~~~~~i~v~v~~~PV~i~~ 324 (342)
.|.+.+++... .++.|+.|..
T Consensus 238 eiDE~~t~~~~-------q~ks~y~l~~ 258 (558)
T KOG0882|consen 238 EIDEVLTDAQY-------QPKSPYGLMH 258 (558)
T ss_pred hhhccchhhhh-------ccccccccce
Confidence 99999999875 4455665544
No 34
>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=94.49 E-value=0.059 Score=54.29 Aligned_cols=96 Identities=19% Similarity=0.257 Sum_probs=63.8
Q ss_pred eEEEEECCCCChHHHHHHHHHhhCCC----cCCceeeEeeeCCcccCCCCCccCCCCCCCCccccccccccCCCccCCCC
Q 019343 171 TLHIKLFPECAPHSVAYILELLSLRH----CAGCQFHRAESRGQSWDIEGNHIKNAPYGPPFGLIQGTLEALGTAFKKIP 246 (342)
Q Consensus 171 ~I~IeL~~d~AP~tv~nFl~L~~~g~----Ydg~~F~Rv~~~~q~GD~~g~~i~~~q~G~p~~~iqGg~~~~g~~~~~ip 246 (342)
.+.++|.++ +|+++++|++|...|- |.-.+|--. ....+.++|
T Consensus 204 y~eve~s~n-sP~saEH~lalmedG~lri~~~tntfis~--------------------------------~~lq~~~~~ 250 (512)
T COG4070 204 YFEVELSRN-SPKSAEHFLALMEDGTLRIDVTTNTFISD--------------------------------DTLQEEKVP 250 (512)
T ss_pred EEEEEeCCC-CchhHHHHHHHhhcceEEEEEeccceeec--------------------------------cccccccCC
Confidence 378888877 9999999999988774 111112111 111122333
Q ss_pred CCCCCCCCCcEEEEeCCC---CcEEEEcCCCCCCCCCceEEEEEEcccHHHHHHHhcC
Q 019343 247 REVCPSIRRGSVAWIGSG---PEFFISLSNHEEWKNSYTVFGSVLPQNMEIVEKIAQL 301 (342)
Q Consensus 247 ~E~~~~~~rG~Vsma~sG---sqFFItL~d~p~Ldg~~TVFG~Vv~eGmdVldkI~~~ 301 (342)
.|....-.||.|..-|-| -.-||.-.+.+. .-.|+|.|+|+ +||++++--...
T Consensus 251 ~en~d~RerG~iTvRn~GvgeGrvYIyRedR~s-s~sHnvVGrV~-eGiELid~a~eG 306 (512)
T COG4070 251 EENFDLRERGAITVRNVGVGEGRVYIYREDRPS-SLSHNVVGRVI-EGIELIDLAEEG 306 (512)
T ss_pred hhhhhhhhcceEEEEeeecccceEEEEecCCCC-ccccceeeeee-cceEEEEecccC
Confidence 333333469999999865 478999877543 23699999999 999988755443
No 35
>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3. A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
Probab=94.36 E-value=0.21 Score=51.75 Aligned_cols=26 Identities=31% Similarity=0.575 Sum_probs=22.5
Q ss_pred eeEEEEECCCCChHHHHHHHHHhhCC
Q 019343 170 GTLHIKLFPECAPHSVAYILELLSLR 195 (342)
Q Consensus 170 G~I~IeL~~d~AP~tv~nFl~L~~~g 195 (342)
--|.|+||.+.||.|+.+|+++....
T Consensus 375 ~vi~IeLydd~AP~s~~yFRk~tGL~ 400 (503)
T TIGR03268 375 KVIEIELYDDNAPRSVWYFRKFTGLK 400 (503)
T ss_pred hEEEEEEcccCCchHHHHHHHhcCCc
Confidence 34899999999999999999986544
No 36
>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=93.81 E-value=0.14 Score=51.73 Aligned_cols=24 Identities=33% Similarity=0.522 Sum_probs=21.5
Q ss_pred eEEEEECCCCChHHHHHHHHHhhC
Q 019343 171 TLHIKLFPECAPHSVAYILELLSL 194 (342)
Q Consensus 171 ~I~IeL~~d~AP~tv~nFl~L~~~ 194 (342)
-|.||||.+.||.++.+|.++...
T Consensus 377 iieIELyed~APrSv~yFRr~t~l 400 (512)
T COG4070 377 IIEIELYEDRAPRSVWYFRRSTGL 400 (512)
T ss_pred EEEEEecCCCCchhhHHHHhhccc
Confidence 499999999999999999998653
No 37
>smart00223 APPLE APPLE domain. Four-fold repeat in plasma kallikrein and coagulation factor XI. Factor XI apple 3 mediates binding to platelets. Factor XI apple 1 binds high-molecular-mass kininogen. Apple 4 in factor XI mediates dimer formation and binds to factor XIIa. Mutations in apple 4 cause factor XI deficiency, an inherited bleeding disorder.
Probab=91.63 E-value=0.33 Score=38.31 Aligned_cols=53 Identities=23% Similarity=0.493 Sum_probs=43.6
Q ss_pred cccccccccceecccccccCChHHHHHHHHhhccCCCCCCCCceeEEcCCCCCCcccccceeeccCC
Q 019343 68 IENLEFWGGAVKWGSDFKFNSSRMCCEACKAMCTGNDGPCLCDTWVFCGNKKSCGSRFGECWLKKQK 134 (342)
Q Consensus 68 ~~~~~~~g~~v~wg~~~~~~s~~~cc~~c~~~~~~~~~~~~cn~Wv~c~~~~~c~~~~~ecWLK~~~ 134 (342)
.+|++|.|.-++ .-...++++|++.|.+.. +|-.|-|=....... .||||...
T Consensus 6 ~~~~df~G~Dl~---~~~~~~~~~Cq~~Ct~~~-------~C~~FTf~~~~~~~~----~C~LK~s~ 58 (79)
T smart00223 6 YKNVDFRGSDIN---TVYVPSAQVCQKRCTSHP-------RCLFFTFSTNEPPEE----KCLLKDSV 58 (79)
T ss_pred ccCccccCceee---eeecCCHHHHHHhhcCCC-------CccEEEeeCCCCCCC----EeEeCcCC
Confidence 467888888887 457899999999999873 999999999888542 67999884
No 38
>PF12903 DUF3830: Protein of unknown function (DUF3830); InterPro: IPR024532 This is a family of bacterial and archaeal proteins. The structure of one of family members, A0JVT3 from SWISSPROT, has been characterised and shown to contain a cyclophilin-like fold.; PDB: 3KOP_B.
Probab=90.32 E-value=0.31 Score=43.10 Aligned_cols=24 Identities=25% Similarity=0.307 Sum_probs=19.9
Q ss_pred ceeEEEEECCCCChHHHHHHHHHh
Q 019343 169 YGTLHIKLFPECAPHSVAYILELL 192 (342)
Q Consensus 169 ~G~I~IeL~~d~AP~tv~nFl~L~ 192 (342)
.-.++.+|..|.||+||+.|.++.
T Consensus 7 g~~~~A~l~~d~AP~Tcaa~~~~L 30 (147)
T PF12903_consen 7 GVSFTARLLDDKAPKTCAAFWEAL 30 (147)
T ss_dssp TEEEEEEE-TTTSHHHHHHHHHH-
T ss_pred CeEEEEEEcccCChHHHHHHHHhC
Confidence 347889999999999999999986
No 39
>PRK00969 hypothetical protein; Provisional
Probab=88.51 E-value=3.1 Score=43.48 Aligned_cols=117 Identities=16% Similarity=0.163 Sum_probs=66.7
Q ss_pred CccEEEEEEeceeEEEEECCCCChHHHHHHHHHhhCCCcCCceeeEeeeCCcccCCCCCccCCCCCCCCccccccccccC
Q 019343 159 GQGIVGLETEYGTLHIKLFPECAPHSVAYILELLSLRHCAGCQFHRAESRGQSWDIEGNHIKNAPYGPPFGLIQGTLEAL 238 (342)
Q Consensus 159 ~~~~V~l~T~~G~I~IeL~~d~AP~tv~nFl~L~~~g~Ydg~~F~Rv~~~~q~GD~~g~~i~~~q~G~p~~~iqGg~~~~ 238 (342)
......+.|+.|.|+|+|. .+..++..+++-.+. |.|...+=.-. . ...||
T Consensus 49 ~~~~y~IkTtkG~i~Iel~--~~~~~~~~w~e~yk~--~e~~~i~W~s~-------~-----~vAfG------------- 99 (508)
T PRK00969 49 ETKKYRIKTTKGEIVIELT--EENESVDFWLENYKE--FEGKSLRWTSR-------S-----AVAFG------------- 99 (508)
T ss_pred ccceEEEEccCceEEEEEc--cCcchhhHHHHhHHh--hcCCceEeccc-------c-----ceeEc-------------
Confidence 3567889999999999999 455556666654322 23332222100 0 00111
Q ss_pred CCccCCCCCCCCC-CCCCcEEEEeCCC-----CcEEEEcCCCCCCCC--CceEEEEEEcccHHHHHHHhcCCCCCC
Q 019343 239 GTAFKKIPREVCP-SIRRGSVAWIGSG-----PEFFISLSNHEEWKN--SYTVFGSVLPQNMEIVEKIAQLPTKSD 306 (342)
Q Consensus 239 g~~~~~ip~E~~~-~~~rG~Vsma~sG-----sqFFItL~d~p~Ldg--~~TVFG~Vv~eGmdVldkI~~~~td~~ 306 (342)
.--.+++.+..+ ...++.|.+.-+| +.+.|+..++...-+ .--+||+|+ .|..+|+++...+.-.+
T Consensus 100 -p~~s~l~p~~~~~~y~r~DV~lg~~G~dp~~thLIfsk~~h~a~YG~p~~gv~grVi-~Gk~vl~~L~~~D~I~s 173 (508)
T PRK00969 100 -PFESDLEPSREEYEYERWDVVLSLSGFDPSETHLIFSKRDHSADYGAPNDGVIGRVV-GGKRVLDRLTDGDRIIS 173 (508)
T ss_pred -ccccCcccccCcceeecccEEEEccCCCCCCceEEEEecchhhhhCCCCCCceEEEc-cchhhHhhccCCCeEEE
Confidence 111122222222 2368889998876 345555566532111 127999999 99999999987665444
No 40
>PF04126 Cyclophil_like: Cyclophilin-like; InterPro: IPR007256 Proteins of this family have no known function.; PDB: 2KA0_A 1ZX8_C 2NNZ_A.
Probab=87.81 E-value=2.9 Score=35.42 Aligned_cols=100 Identities=12% Similarity=0.176 Sum_probs=61.2
Q ss_pred cEEEEEEeceeEEEEECCCCChHHHHHHHHHh----hCCCcCCceeeEeeeCCcccCCCCCccCCCCCCCCccccccccc
Q 019343 161 GIVGLETEYGTLHIKLFPECAPHSVAYILELL----SLRHCAGCQFHRAESRGQSWDIEGNHIKNAPYGPPFGLIQGTLE 236 (342)
Q Consensus 161 ~~V~l~T~~G~I~IeL~~d~AP~tv~nFl~L~----~~g~Ydg~~F~Rv~~~~q~GD~~g~~i~~~q~G~p~~~iqGg~~ 236 (342)
+.+.|+.....+.++|+.. .+++.|++.. +...|-+ .+|--.+ .
T Consensus 1 mkI~i~i~~~~~~a~L~d~---~ta~~~~~~LPlt~~~~~~g~-E~y~~~p-------------~--------------- 48 (120)
T PF04126_consen 1 MKIKITIGGQEIEAELNDS---PTARAFAAQLPLTVTMNDWGN-EKYFSLP-------------L--------------- 48 (120)
T ss_dssp EEEEEEETTEEEEEEEETT---HHHHHHHHC-SEEEEEEECTT-EEEEE-S-----------------------------
T ss_pred CeEEEEECCEEEEEEECCC---HHHHHHHHhCCeEEEHHHCCc-eEEEeCC-------------C---------------
Confidence 3567777788899999988 7888898864 1223422 3332211 0
Q ss_pred cCCCccCCCC-C-CCCCCCCCcEEEEeCCCCcEEEEcCCCC-------CCCCCceEEEEEEcccHHHHHHHhc
Q 019343 237 ALGTAFKKIP-R-EVCPSIRRGSVAWIGSGPEFFISLSNHE-------EWKNSYTVFGSVLPQNMEIVEKIAQ 300 (342)
Q Consensus 237 ~~g~~~~~ip-~-E~~~~~~rG~Vsma~sGsqFFItL~d~p-------~Ldg~~TVFG~Vv~eGmdVldkI~~ 300 (342)
.++ . ........|.|+.-..|..|-|.+++.| .+-....++|+|+ +|++.++++..
T Consensus 49 -------~l~~~~~~~~~~~~GDi~Yw~pg~~l~ifyg~~p~S~~~~~~~~~~v~~lG~i~-~~~~~l~~~~~ 113 (120)
T PF04126_consen 49 -------KLPTEENPRSSVEAGDIAYWPPGGALAIFYGDTPISEGGEIRPASPVNVLGRIV-SDLENLKEVKG 113 (120)
T ss_dssp -----------SSSEESSB-TTEEEEECCCTEEEEESS--TT--TTSB--SSSEEEEEEEE-C-GGGGGG--T
T ss_pred -------CCCcccCccccccCceEEEeCCCCEEEEEecCcccccccccccCCcceEEEEEC-CCHHHHhhCCC
Confidence 001 0 1112346899999999999999998874 3556789999999 89988876643
No 41
>COG2164 Uncharacterized conserved protein [Function unknown]
Probab=65.38 E-value=5 Score=33.69 Aligned_cols=109 Identities=17% Similarity=0.240 Sum_probs=63.4
Q ss_pred ccEEEEEEeceeEEEEECCCCChHHHHHHHHHhhCCCcCCceeeEeeeCCcccCCCCCccCCCCCCCCccccccccccCC
Q 019343 160 QGIVGLETEYGTLHIKLFPECAPHSVAYILELLSLRHCAGCQFHRAESRGQSWDIEGNHIKNAPYGPPFGLIQGTLEALG 239 (342)
Q Consensus 160 ~~~V~l~T~~G~I~IeL~~d~AP~tv~nFl~L~~~g~Ydg~~F~Rv~~~~q~GD~~g~~i~~~q~G~p~~~iqGg~~~~g 239 (342)
++.+.+.-.-|.-+++|+.+. |.+|..+..- ..|--. +..| +..+|-
T Consensus 3 ~MRiri~fEsg~c~~eL~ee~-pE~vr~i~d~--------lPies~---an~W---------------------geEiYF 49 (126)
T COG2164 3 TMRIRITFESGHCTGELDEEN-PESVRRIYDS--------LPIESR---ANLW---------------------GEEIYF 49 (126)
T ss_pred eEEEEEEEecceEEEEccccC-hHHHHHHHHh--------CCchhh---hhhc---------------------cceEEe
Confidence 456777777799999999987 9988876442 222111 0111 111111
Q ss_pred CccCCCCCCCCC--CCCCcEEEEeCCCCcEEEEcCCCCCCCC------CceEEEEEEcccHHHHHHHhcCC
Q 019343 240 TAFKKIPREVCP--SIRRGSVAWIGSGPEFFISLSNHEEWKN------SYTVFGSVLPQNMEIVEKIAQLP 302 (342)
Q Consensus 240 ~~~~~ip~E~~~--~~~rG~Vsma~sGsqFFItL~d~p~Ldg------~~TVFG~Vv~eGmdVldkI~~~~ 302 (342)
...-++....++ ....|.|+.-..|--.-+.++..|--|. .-.|+|+++ ++|+.+.++...+
T Consensus 50 ~tpv~v~k~ENp~dvve~GDv~YWpPGkAlClFFGkTpmsddkiqPaSaVNvIGrIv-~~lE~lk~v~dGe 119 (126)
T COG2164 50 DTPVDVDKYENPSDVVEPGDVSYWPPGKALCLFFGKTPMSDDKIQPASAVNVIGRIV-KNLELLKSVDDGE 119 (126)
T ss_pred ecccchhhccCcccccCcccccccCCCcEEEEEecCCcCcccccCccchHHHHHHHH-hhHHhhhcccCCc
Confidence 000011111122 3468889888888766666666553332 245899999 9999998776543
No 42
>PF06716 DUF1201: Protein of unknown function (DUF1201); InterPro: IPR009591 This entry consists of several Beet yellows virus (BYV) putative membrane-binding proteins of around 54 residues in length. The function of this currently unknown.
Probab=47.59 E-value=29 Score=25.01 Aligned_cols=29 Identities=28% Similarity=0.524 Sum_probs=15.9
Q ss_pred HHHHHHhhhh---hccccCCCCCCcccccccc
Q 019343 25 ISFAVVYTFL---SFIFRPNGHPLDAKFQSFT 53 (342)
Q Consensus 25 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 53 (342)
+.|+++++.| ..++|.++.|.+.++..++
T Consensus 21 l~~~~~F~~F~~Kqilfr~~~~snear~n~st 52 (54)
T PF06716_consen 21 LFCLVVFIWFVYKQILFRNNPQSNEARFNHST 52 (54)
T ss_pred HHHHHHHHHHHHHHHHHccCCCcchhhccccc
Confidence 3444444333 3567888777665554443
No 43
>PF03032 Brevenin: Brevenin/esculentin/gaegurin/rugosin family; InterPro: IPR004275 In addition to the highly specific cell-mediated immune system, vertebrates possess an efficient host-defence mechanism against invading microorganisms which involves the synthesis of highly potent antimicrobial peptides with a large spectrum of activity. This entry represents a number of these defence peptides secreted from the skin of amphibians, including the opiate-like dermorphins and deltorphins, and the antimicrobial dermoseptins and temporins.; GO: 0006952 defense response, 0042742 defense response to bacterium, 0005576 extracellular region
Probab=41.56 E-value=15 Score=26.34 Aligned_cols=15 Identities=47% Similarity=0.855 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHH
Q 019343 15 TSLILFFLALISFAV 29 (342)
Q Consensus 15 ~~~~~~~~~~~~~~~ 29 (342)
.+|+|||+|+||..+
T Consensus 6 sllLlfflG~ISlSl 20 (46)
T PF03032_consen 6 SLLLLFFLGTISLSL 20 (46)
T ss_pred HHHHHHHHHHcccch
Confidence 367888888877543
No 44
>PF00024 PAN_1: PAN domain This Prosite entry concerns apple domains, a subset of PAN domains; InterPro: IPR003014 PAN domains have significant functional versatility fulfilling diverse biological functions by mediating protein-protein or protein-carbohydrate interactions []. These domains contain a hair-pin loop like structure, similar to knottins, but the pattern of disulphide bonds differs It has been shown that, the N-terminal N domains of members of the plasminogen/hepatocyte growth factor family, the apple domains of the plasma prekallikrein/coagulation factor XI family, and domains of various nematode proteins belong to the same module superfamily, the PAN module []. PAN contains a conserved core of three disulphide bridges. In some members of the family there is an additional fourth disulphide bridge that links the N and C termini of the domain.; PDB: 1GP9_C 2QJ2_B 1GMO_H 1NK1_B 3MKP_B 1BHT_B 3HN4_A 1GMN_A 3HMS_A 3HMT_B ....
Probab=37.17 E-value=36 Score=25.02 Aligned_cols=54 Identities=19% Similarity=0.418 Sum_probs=39.1
Q ss_pred cccccccccceecccccccCChHHHHHHHHhhccCCCCCCCCceeEEcCCCCCCcccccceeeccCCCCC
Q 019343 68 IENLEFWGGAVKWGSDFKFNSSRMCCEACKAMCTGNDGPCLCDTWVFCGNKKSCGSRFGECWLKKQKDVL 137 (342)
Q Consensus 68 ~~~~~~~g~~v~wg~~~~~~s~~~cc~~c~~~~~~~~~~~~cn~Wv~c~~~~~c~~~~~ecWLK~~~~~~ 137 (342)
.++..|.|.+++ ...+.|..+|.+.|.... . .|-++.|-.... .|=|+......
T Consensus 7 ~~~~~l~~~~~~---~~~v~s~~~C~~~C~~~~----~--~C~s~~y~~~~~-------~C~L~~~~~~~ 60 (79)
T PF00024_consen 7 IPGYRLSGHSIK---EINVPSLEECAQLCLNEP----R--RCKSFNYDPSSK-------TCYLSSSDRSS 60 (79)
T ss_dssp EEEEEEESCEEE---EEEESSHHHHHHHHHHST----T---ESEEEEETTTT-------EEEEECSSSSS
T ss_pred ECCEEEeCCcce---EEcCCCHHHHHhhcCcCc----c--cCCeEEEECCCC-------EEEEcCCCCCc
Confidence 456667775544 236789999999999973 0 499999999866 55888776555
No 45
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=31.68 E-value=34 Score=34.45 Aligned_cols=48 Identities=17% Similarity=0.270 Sum_probs=32.5
Q ss_pred CCCCcEEEEeCCC-----CcEEEEcCCCCCCCCCceEEEEEEcccHHHHHHHhc
Q 019343 252 SIRRGSVAWIGSG-----PEFFISLSNHEEWKNSYTVFGSVLPQNMEIVEKIAQ 300 (342)
Q Consensus 252 ~~~rG~Vsma~sG-----sqFFItL~d~p~Ldg~~TVFG~Vv~eGmdVldkI~~ 300 (342)
...+|.|.+.|.. -|.=|++.+.|. |++..|.|+|.++.|.+|+-|..
T Consensus 297 ~r~~G~ItIdN~~ygRY~GElQI~~~dlp~-d~rvNViG~V~~~d~~LLd~I~~ 349 (357)
T PF05913_consen 297 ERKRGDITIDNENYGRYKGELQIVKKDLPA-DERVNVIGRVDEEDLPLLDYIKP 349 (357)
T ss_dssp -B-TTEEEEE-GGGGGGTT-EEEESS-B----TTEEEEEEE-GGGGGGGGG--T
T ss_pred cccCceEEEeCCCccccccEEEEEcccCCC-CCCeeEEEEECHHHHHHHHhcCC
Confidence 3579999999964 589999999764 88899999999889999988764
No 46
>PF10981 DUF2788: Protein of unknown function (DUF2788); InterPro: IPR021249 This bacterial family of proteins have no known function.
Probab=28.98 E-value=57 Score=24.01 Aligned_cols=25 Identities=8% Similarity=0.125 Sum_probs=20.4
Q ss_pred ccccccCCCCCchHHHHHHHHHHHH
Q 019343 2 VRRQQNDLETPRFTSLILFFLALIS 26 (342)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~ 26 (342)
++||.|-++.||+++-+.|.+|.+.
T Consensus 17 l~kks~agkfG~~ilf~vLglG~~G 41 (52)
T PF10981_consen 17 LAKKSKAGKFGTFILFLVLGLGCAG 41 (52)
T ss_pred HHHhcCCCCcchhHHHHHHHHHHHH
Confidence 4688999999999988888887644
No 47
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=28.83 E-value=40 Score=28.60 Aligned_cols=12 Identities=17% Similarity=0.080 Sum_probs=6.4
Q ss_pred CCCcCCc-eeeEe
Q 019343 194 LRHCAGC-QFHRA 205 (342)
Q Consensus 194 ~g~Ydg~-~F~Rv 205 (342)
.++|+.. .||..
T Consensus 75 ~g~Yd~~g~~~~~ 87 (130)
T PF12273_consen 75 PGYYDQQGNFHPN 87 (130)
T ss_pred CCCCCCCCCCCCC
Confidence 4566664 45444
No 48
>PHA03001 putative virion core protein; Provisional
Probab=22.64 E-value=2e+02 Score=25.06 Aligned_cols=47 Identities=21% Similarity=0.268 Sum_probs=32.3
Q ss_pred EEEEEEeceeEEEEEC--CCCCh------HHHHHHHHHhhCC-CcCCceeeEeeeC
Q 019343 162 IVGLETEYGTLHIKLF--PECAP------HSVAYILELLSLR-HCAGCQFHRAESR 208 (342)
Q Consensus 162 ~V~l~T~~G~I~IeL~--~d~AP------~tv~nFl~L~~~g-~Ydg~~F~Rv~~~ 208 (342)
-+.|+|..|++.+..- +..+| +++++|++..+.- .-+-+.||-++++
T Consensus 5 NIfLEsd~grvkl~~~~~~~~~~~~~~~~ka~~~fl~~L~kYi~v~eStFylvvrd 60 (132)
T PHA03001 5 NIFLETDAGRVKLAIENPDKVCATKAEMRKAINKFLELLKKYIHVDKSTFYLVVKD 60 (132)
T ss_pred EEEEeccCCceEEEEcCCCccccccchHHHHHHHHHHHHHhhEEecccEEEEEEec
Confidence 4678999998776663 33344 5788998877543 3567788888653
No 49
>PF06138 Chordopox_E11: Chordopoxvirus E11 protein; InterPro: IPR009201 This group represents a virion core protein, vaccinia E11L type.
Probab=22.46 E-value=2.1e+02 Score=24.94 Aligned_cols=46 Identities=15% Similarity=0.155 Sum_probs=32.8
Q ss_pred EEEEEEeceeEEEEECCCCCh---------HHHHHHHHHhhCC-CcCCceeeEeee
Q 019343 162 IVGLETEYGTLHIKLFPECAP---------HSVAYILELLSLR-HCAGCQFHRAES 207 (342)
Q Consensus 162 ~V~l~T~~G~I~IeL~~d~AP---------~tv~nFl~L~~~g-~Ydg~~F~Rv~~ 207 (342)
-+.|+|..|++.+..-.+..+ ++++.|++..+.- .-+-+.||-+++
T Consensus 5 NIfLEsd~grvkl~~~~~~~~c~~~~~~~~~Av~~Fl~~L~kyI~veeStFylvvr 60 (130)
T PF06138_consen 5 NIFLESDSGRVKLRYEEPDCKCARTGCEARRAVKHFLSVLKKYIDVEESTFYLVVR 60 (130)
T ss_pred EEEEeccCceeEEEEeCCCcccccccchHHHHHHHHHHHHHhhEEecccEEEEEEe
Confidence 467899999988877654422 3788999887543 356778888865
No 50
>PF12575 DUF3753: Protein of unknown function (DUF3753); InterPro: IPR009175 This group represents an uncharacterised conserved protein belonging to poxvirus family I2.
Probab=21.68 E-value=1.4e+02 Score=23.46 Aligned_cols=32 Identities=16% Similarity=0.310 Sum_probs=17.9
Q ss_pred ccccCCCCCchHHHHHHHHHHHHHHHHhhhhh
Q 019343 4 RQQNDLETPRFTSLILFFLALISFAVVYTFLS 35 (342)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 35 (342)
++++-+.....++++.+++.++...++++.|.
T Consensus 39 ~~~~~~~~~~~~~ii~ii~v~ii~~l~flYLK 70 (72)
T PF12575_consen 39 NNKNNKNFNWIILIISIIFVLIIVLLTFLYLK 70 (72)
T ss_pred ccCCCCcchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45555555556666666665555555555443
No 51
>cd01751 PLAT_LH2 PLAT/ LH2 domain of plant lipoxygenase related proteins. Lipoxygenases are nonheme, nonsulfur iron dioxygenases that act on lipid substrates containing one or more (Z,Z)-1,4-pentadiene moieties. In plants, the immediate products are involved in defense mechanisms against pathogens and may be precursors of metabolic regulators. The generally proposed function of PLAT/LH2 domains is to mediate interaction with lipids or membrane bound proteins.
Probab=20.45 E-value=33 Score=29.98 Aligned_cols=11 Identities=27% Similarity=1.074 Sum_probs=8.8
Q ss_pred CCCceeEEcCC
Q 019343 107 CLCDTWVFCGN 117 (342)
Q Consensus 107 ~~cn~Wv~c~~ 117 (342)
+.||+|||=-.
T Consensus 116 F~CNSWVyp~~ 126 (137)
T cd01751 116 FVCNSWVYPKK 126 (137)
T ss_pred EEccccCccCC
Confidence 78999999543
Done!