Query 019344
Match_columns 342
No_of_seqs 189 out of 1758
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 08:41:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019344.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019344hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06027 DUF914: Eukaryotic pr 100.0 3.1E-38 6.8E-43 280.0 32.3 300 15-314 7-314 (334)
2 PLN00411 nodulin MtN21 family 100.0 4.1E-32 8.8E-37 246.2 34.0 294 17-313 9-336 (358)
3 PRK11272 putative DMT superfam 100.0 6.5E-29 1.4E-33 221.7 33.8 269 31-308 13-288 (292)
4 PRK10532 threonine and homoser 100.0 4.9E-28 1.1E-32 216.1 34.0 279 16-310 7-286 (293)
5 PRK11689 aromatic amino acid e 100.0 1.5E-28 3.3E-33 219.6 30.3 276 23-308 6-290 (295)
6 PRK11453 O-acetylserine/cystei 100.0 4.3E-28 9.2E-33 217.2 31.9 272 26-308 9-290 (299)
7 TIGR00817 tpt Tpt phosphate/ph 100.0 1.3E-28 2.7E-33 221.2 27.0 257 47-311 27-299 (302)
8 TIGR00950 2A78 Carboxylate/Ami 100.0 1.9E-27 4.1E-32 209.3 28.9 242 48-300 15-259 (260)
9 KOG2766 Predicted membrane pro 100.0 1.1E-30 2.3E-35 214.6 6.5 295 15-313 12-307 (336)
10 PRK15430 putative chlorampheni 100.0 7.2E-27 1.6E-31 208.9 31.8 270 17-306 4-286 (296)
11 PTZ00343 triose or hexose phos 100.0 9.2E-26 2E-30 205.6 32.5 249 49-306 75-349 (350)
12 TIGR03340 phn_DUF6 phosphonate 99.9 2.2E-24 4.7E-29 191.6 26.1 240 55-302 31-280 (281)
13 COG0697 RhaT Permeases of the 99.9 9E-22 2E-26 175.7 33.5 278 19-306 5-288 (292)
14 KOG4510 Permease of the drug/m 99.9 7.8E-26 1.7E-30 187.3 1.2 262 42-306 54-326 (346)
15 TIGR00688 rarD rarD protein. T 99.9 2.2E-21 4.7E-26 170.2 29.1 241 22-280 3-255 (256)
16 PF08449 UAA: UAA transporter 99.9 5.7E-21 1.2E-25 171.4 29.7 276 36-311 15-303 (303)
17 COG5006 rhtA Threonine/homoser 99.9 4E-20 8.7E-25 152.6 27.4 251 48-311 37-288 (292)
18 KOG2765 Predicted membrane pro 99.9 9.6E-20 2.1E-24 158.5 22.8 295 16-311 9-396 (416)
19 COG2962 RarD Predicted permeas 99.9 2.1E-18 4.5E-23 146.4 28.8 275 17-307 3-285 (293)
20 TIGR00776 RhaT RhaT L-rhamnose 99.9 8.1E-19 1.8E-23 156.0 27.5 270 23-306 3-289 (290)
21 KOG1441 Glucose-6-phosphate/ph 99.8 5.5E-19 1.2E-23 155.3 11.1 258 47-312 44-314 (316)
22 KOG2234 Predicted UDP-galactos 99.8 7.3E-15 1.6E-19 128.4 34.0 280 26-309 20-326 (345)
23 KOG1581 UDP-galactose transpor 99.7 1.5E-15 3.2E-20 129.2 23.3 260 48-310 48-318 (327)
24 PF04142 Nuc_sug_transp: Nucle 99.7 3.4E-15 7.4E-20 128.6 24.2 218 78-296 14-244 (244)
25 KOG1443 Predicted integral mem 99.7 2.5E-14 5.5E-19 121.7 22.1 268 31-305 22-315 (349)
26 KOG3912 Predicted integral mem 99.7 6.5E-14 1.4E-18 117.6 22.2 259 48-306 36-335 (372)
27 KOG1580 UDP-galactose transpor 99.6 1.7E-14 3.7E-19 118.1 16.4 233 78-310 82-318 (337)
28 KOG1444 Nucleotide-sugar trans 99.6 1.7E-12 3.7E-17 112.1 23.4 258 48-312 38-307 (314)
29 KOG1582 UDP-galactose transpor 99.5 6.3E-13 1.4E-17 111.2 17.6 256 51-310 75-337 (367)
30 COG5070 VRG4 Nucleotide-sugar 99.5 4.6E-13 9.9E-18 108.9 14.5 265 47-311 33-302 (309)
31 COG2510 Predicted membrane pro 99.4 3E-12 6.6E-17 95.1 11.2 128 24-153 6-139 (140)
32 PF06800 Sugar_transport: Suga 99.4 1.4E-10 3.1E-15 99.6 22.6 245 49-302 10-268 (269)
33 KOG4314 Predicted carbohydrate 99.4 1.5E-11 3.2E-16 98.4 12.8 219 81-309 53-280 (290)
34 PF00892 EamA: EamA-like trans 99.3 1.7E-11 3.7E-16 95.0 11.3 125 178-304 1-125 (126)
35 COG2510 Predicted membrane pro 99.3 4.2E-11 9.1E-16 89.1 11.4 135 169-305 4-139 (140)
36 KOG1583 UDP-N-acetylglucosamin 99.3 2.4E-11 5.1E-16 102.3 9.4 270 38-307 20-316 (330)
37 PF13536 EmrE: Multidrug resis 99.3 1E-10 2.2E-15 89.0 12.0 100 56-156 2-109 (113)
38 KOG1442 GDP-fucose transporter 99.2 3.3E-12 7.2E-17 107.1 2.4 254 48-308 58-330 (347)
39 PF03151 TPT: Triose-phosphate 99.2 1.4E-09 3E-14 87.5 15.2 137 169-305 1-153 (153)
40 PF00892 EamA: EamA-like trans 99.2 1.7E-10 3.6E-15 89.4 9.4 103 49-152 17-125 (126)
41 TIGR00803 nst UDP-galactose tr 99.1 1.8E-09 3.9E-14 92.6 14.6 196 106-303 3-222 (222)
42 TIGR00950 2A78 Carboxylate/Ami 99.1 4.3E-09 9.4E-14 92.4 16.5 131 19-149 126-260 (260)
43 PF05653 Mg_trans_NIPA: Magnes 99.1 8.1E-09 1.8E-13 91.8 18.1 221 86-309 54-296 (300)
44 PRK13499 rhamnose-proton sympo 98.9 2.7E-06 5.8E-11 76.5 27.3 226 78-306 70-342 (345)
45 PRK15430 putative chlorampheni 98.9 6.5E-08 1.4E-12 86.7 16.3 139 164-305 4-145 (296)
46 TIGR03340 phn_DUF6 phosphonate 98.9 6.5E-08 1.4E-12 86.0 16.0 132 170-306 3-136 (281)
47 TIGR00688 rarD rarD protein. T 98.9 1.4E-07 3.1E-12 82.6 16.4 135 168-305 2-142 (256)
48 KOG2922 Uncharacterized conser 98.9 3.7E-08 8E-13 85.4 11.8 225 84-311 66-312 (335)
49 PLN00411 nodulin MtN21 family 98.8 2.5E-07 5.4E-12 84.6 16.1 138 18-156 186-331 (358)
50 PRK10532 threonine and homoser 98.8 7.2E-07 1.6E-11 79.8 17.6 132 21-155 148-283 (293)
51 PRK11272 putative DMT superfam 98.7 3.7E-07 8E-12 81.6 15.2 132 21-155 150-287 (292)
52 PRK02971 4-amino-4-deoxy-L-ara 98.7 1.2E-06 2.6E-11 67.7 14.8 122 168-308 2-125 (129)
53 PF03151 TPT: Triose-phosphate 98.6 3.9E-06 8.6E-11 67.3 15.9 130 22-151 1-151 (153)
54 PRK15051 4-amino-4-deoxy-L-ara 98.6 1.4E-06 3.1E-11 65.6 12.2 64 90-153 45-109 (111)
55 PRK11689 aromatic amino acid e 98.6 1.8E-06 4E-11 77.2 15.0 77 79-155 213-289 (295)
56 PRK11453 O-acetylserine/cystei 98.6 5.3E-06 1.2E-10 74.4 17.2 136 20-155 142-289 (299)
57 TIGR00776 RhaT RhaT L-rhamnose 98.6 1.6E-06 3.5E-11 77.3 13.6 131 18-153 149-288 (290)
58 COG4975 GlcU Putative glucose 98.5 2E-08 4.4E-13 83.5 -0.8 261 36-305 12-285 (288)
59 TIGR00817 tpt Tpt phosphate/ph 98.5 3.8E-06 8.1E-11 75.5 13.7 135 21-155 145-295 (302)
60 PTZ00343 triose or hexose phos 98.4 3.1E-05 6.8E-10 70.9 17.6 137 166-305 47-186 (350)
61 PF13536 EmrE: Multidrug resis 98.4 1.2E-05 2.5E-10 61.1 12.2 67 242-309 44-110 (113)
62 COG0697 RhaT Permeases of the 98.3 4.4E-05 9.6E-10 67.8 16.5 133 19-154 152-288 (292)
63 COG2962 RarD Predicted permeas 98.3 2.8E-05 6.1E-10 67.0 13.5 142 164-306 3-145 (293)
64 PRK15051 4-amino-4-deoxy-L-ara 98.2 6.4E-05 1.4E-09 56.6 13.6 64 242-305 46-109 (111)
65 PRK02971 4-amino-4-deoxy-L-ara 98.2 9.3E-06 2E-10 62.8 8.8 72 84-155 50-124 (129)
66 PRK10452 multidrug efflux syst 97.9 0.00015 3.2E-09 55.1 10.3 67 242-308 39-106 (120)
67 COG5006 rhtA Threonine/homoser 97.9 0.00055 1.2E-08 57.8 13.4 132 22-155 149-284 (292)
68 PF06027 DUF914: Eukaryotic pr 97.9 0.00073 1.6E-08 60.9 15.3 70 240-309 86-155 (334)
69 PRK10452 multidrug efflux syst 97.8 0.00013 2.9E-09 55.3 8.4 72 84-155 33-105 (120)
70 PF06800 Sugar_transport: Suga 97.8 0.00048 1E-08 59.7 12.7 129 17-149 134-267 (269)
71 PF08449 UAA: UAA transporter 97.8 0.00085 1.8E-08 60.3 14.6 130 178-312 10-143 (303)
72 PRK10650 multidrug efflux syst 97.8 0.0012 2.5E-08 49.3 12.2 72 81-152 35-107 (109)
73 PRK09541 emrE multidrug efflux 97.7 0.00083 1.8E-08 50.3 11.3 69 87-155 36-105 (110)
74 PRK09541 emrE multidrug efflux 97.7 0.00055 1.2E-08 51.3 10.3 66 242-307 39-105 (110)
75 COG2076 EmrE Membrane transpor 97.7 0.00096 2.1E-08 49.0 11.0 72 84-155 33-105 (106)
76 PRK11431 multidrug efflux syst 97.7 0.00041 8.9E-09 51.4 9.1 71 84-154 32-103 (105)
77 PF05653 Mg_trans_NIPA: Magnes 97.6 0.00075 1.6E-08 60.3 10.6 122 164-307 3-124 (300)
78 PF04657 DUF606: Protein of un 97.6 0.0052 1.1E-07 48.2 14.1 131 169-302 2-138 (138)
79 COG2076 EmrE Membrane transpor 97.4 0.0019 4E-08 47.5 9.4 66 242-307 39-105 (106)
80 PRK10650 multidrug efflux syst 97.4 0.0066 1.4E-07 45.3 12.6 63 242-304 44-107 (109)
81 PF06379 RhaT: L-rhamnose-prot 97.4 0.093 2E-06 46.9 26.6 283 23-306 5-341 (344)
82 PRK11431 multidrug efflux syst 97.4 0.0029 6.4E-08 46.9 9.9 65 242-306 38-103 (105)
83 PF04657 DUF606: Protein of un 97.3 0.01 2.3E-07 46.5 13.3 124 26-150 6-138 (138)
84 COG3238 Uncharacterized protei 97.2 0.024 5.3E-07 44.5 13.9 139 166-306 3-147 (150)
85 PRK13499 rhamnose-proton sympo 97.2 0.011 2.4E-07 53.5 13.6 141 164-308 3-156 (345)
86 PF07857 DUF1632: CEO family ( 97.2 0.003 6.5E-08 54.5 9.1 132 169-310 1-139 (254)
87 PF00893 Multi_Drug_Res: Small 97.1 0.0019 4.2E-08 46.9 6.8 55 90-144 38-93 (93)
88 PF04142 Nuc_sug_transp: Nucle 97.1 0.0059 1.3E-07 52.9 10.3 69 242-310 26-94 (244)
89 PF10639 UPF0546: Uncharacteri 96.7 0.0053 1.2E-07 45.9 6.0 68 84-151 44-112 (113)
90 TIGR00803 nst UDP-galactose tr 96.6 0.033 7.2E-07 47.5 10.9 67 84-150 155-221 (222)
91 KOG4510 Permease of the drug/m 96.5 0.0026 5.7E-08 54.2 3.6 80 75-154 247-326 (346)
92 PF00893 Multi_Drug_Res: Small 96.4 0.054 1.2E-06 39.3 9.6 55 242-296 38-93 (93)
93 KOG1441 Glucose-6-phosphate/ph 96.2 0.021 4.5E-07 51.1 7.5 136 20-155 162-309 (316)
94 KOG2765 Predicted membrane pro 96.0 0.084 1.8E-06 47.6 10.3 140 16-156 242-393 (416)
95 KOG1581 UDP-galactose transpor 95.5 0.26 5.6E-06 43.2 11.2 137 18-154 169-314 (327)
96 PF10639 UPF0546: Uncharacteri 95.5 0.1 2.2E-06 39.1 7.6 109 175-303 3-112 (113)
97 COG4975 GlcU Putative glucose 95.4 0.0081 1.8E-07 50.7 1.7 132 169-308 3-139 (288)
98 KOG1580 UDP-galactose transpor 95.3 0.061 1.3E-06 45.2 6.5 76 78-153 238-313 (337)
99 COG3238 Uncharacterized protei 95.1 1.3 2.9E-05 34.9 13.3 129 23-152 7-145 (150)
100 PF06379 RhaT: L-rhamnose-prot 94.0 1.4 3.1E-05 39.6 12.2 145 164-311 3-159 (344)
101 KOG2922 Uncharacterized conser 93.7 0.054 1.2E-06 47.7 2.9 130 162-313 15-144 (335)
102 KOG1442 GDP-fucose transporter 93.7 0.099 2.1E-06 45.1 4.3 137 17-153 181-327 (347)
103 KOG2234 Predicted UDP-galactos 93.2 6.2 0.00013 35.7 16.2 61 248-308 107-167 (345)
104 PF07857 DUF1632: CEO family ( 93.2 2.9 6.3E-05 36.3 12.6 75 79-153 53-134 (254)
105 KOG1444 Nucleotide-sugar trans 92.3 1.8 3.8E-05 38.5 10.1 76 80-155 227-302 (314)
106 KOG1443 Predicted integral mem 90.5 9.8 0.00021 33.8 12.6 130 22-151 165-313 (349)
107 PRK02237 hypothetical protein; 89.4 4.3 9.4E-05 29.9 8.2 41 268-308 68-108 (109)
108 KOG4314 Predicted carbohydrate 89.2 0.44 9.6E-06 39.1 3.3 62 247-308 67-128 (290)
109 PRK02237 hypothetical protein; 88.5 8.2 0.00018 28.5 10.6 51 105-155 56-107 (109)
110 KOG1582 UDP-galactose transpor 88.4 6.6 0.00014 34.2 9.9 106 50-155 219-334 (367)
111 PF02694 UPF0060: Uncharacteri 88.2 3.4 7.5E-05 30.3 7.0 41 268-308 66-106 (107)
112 PF02694 UPF0060: Uncharacteri 88.0 7.2 0.00016 28.7 8.5 54 102-155 51-105 (107)
113 KOG3912 Predicted integral mem 87.5 2.7 5.9E-05 36.7 7.1 65 242-306 95-159 (372)
114 KOG1583 UDP-N-acetylglucosamin 84.9 11 0.00025 32.9 9.6 137 18-155 161-316 (330)
115 KOG4831 Unnamed protein [Funct 84.0 3.3 7.1E-05 30.3 5.1 72 79-152 51-124 (125)
116 COG5070 VRG4 Nucleotide-sugar 83.2 22 0.00047 30.2 10.2 103 51-153 185-296 (309)
117 COG3169 Uncharacterized protei 82.6 8 0.00017 27.9 6.4 35 271-305 81-115 (116)
118 PF04342 DUF486: Protein of un 81.6 2.2 4.7E-05 31.2 3.5 32 272-303 75-106 (108)
119 PF04342 DUF486: Protein of un 81.2 19 0.00042 26.4 8.5 47 105-151 59-106 (108)
120 COG2271 UhpC Sugar phosphate p 75.4 49 0.0011 31.2 11.0 44 268-312 168-212 (448)
121 PF08507 COPI_assoc: COPI asso 75.0 37 0.0008 26.3 12.1 32 272-304 73-104 (136)
122 TIGR02865 spore_II_E stage II 71.1 1.2E+02 0.0027 31.1 13.9 44 108-151 11-54 (764)
123 COG1742 Uncharacterized conser 66.2 40 0.00087 24.7 6.6 41 268-308 67-107 (109)
124 PF07168 Ureide_permease: Urei 64.7 1.5 3.2E-05 38.7 -1.0 59 246-305 85-146 (336)
125 PRK06638 NADH:ubiquinone oxido 63.9 86 0.0019 26.2 12.8 33 274-306 133-167 (198)
126 COG1742 Uncharacterized conser 61.9 61 0.0013 23.8 9.3 41 115-155 66-106 (109)
127 PF14851 FAM176: FAM176 family 59.3 77 0.0017 25.2 7.8 8 259-266 19-26 (153)
128 PF07698 7TM-7TMR_HD: 7TM rece 57.5 1.1E+02 0.0023 25.2 19.0 59 74-134 26-85 (194)
129 KOG2322 N-methyl-D-aspartate r 56.8 98 0.0021 26.5 8.4 36 165-200 192-228 (237)
130 PF15345 TMEM51: Transmembrane 56.7 5.4 0.00012 33.7 1.0 24 290-313 66-89 (233)
131 PF03547 Mem_trans: Membrane t 54.4 1.8E+02 0.0039 26.8 14.7 6 278-283 115-120 (385)
132 PF15471 TMEM171: Transmembran 53.8 14 0.00031 31.9 3.1 23 288-310 162-184 (319)
133 PLN00028 nitrate transmembrane 53.3 1.3E+02 0.0029 28.7 10.2 14 289-302 416-429 (476)
134 PF06123 CreD: Inner membrane 53.1 2.1E+02 0.0045 27.2 11.1 74 112-194 302-377 (430)
135 KOG1479 Nucleoside transporter 48.3 2.4E+02 0.0052 26.5 12.2 63 131-193 11-82 (406)
136 PRK11469 hypothetical protein; 47.2 1.6E+02 0.0035 24.3 8.6 44 261-304 42-86 (188)
137 COG4657 RnfA Predicted NADH:ub 47.0 73 0.0016 25.5 5.8 63 124-193 88-157 (193)
138 KOG4831 Unnamed protein [Funct 47.0 34 0.00074 25.2 3.7 54 251-304 70-124 (125)
139 COG1971 Predicted membrane pro 45.8 1.7E+02 0.0036 24.3 7.9 45 261-305 42-87 (190)
140 PF02447 GntP_permease: GntP f 45.2 2.6E+02 0.0057 26.7 10.4 18 281-298 167-184 (441)
141 COG2807 CynX Cyanate permease 43.7 2.7E+02 0.0059 25.9 13.2 62 13-74 204-270 (395)
142 PRK13108 prolipoprotein diacyl 43.3 2.5E+02 0.0053 27.0 9.8 23 285-307 254-276 (460)
143 PF05961 Chordopox_A13L: Chord 42.0 25 0.00054 23.4 2.1 22 289-310 6-27 (68)
144 PF05297 Herpes_LMP1: Herpesvi 41.8 8.6 0.00019 33.6 0.0 53 99-151 41-95 (381)
145 TIGR02840 spore_YtaF putative 41.4 83 0.0018 26.4 5.9 47 258-304 32-80 (206)
146 PF07444 Ycf66_N: Ycf66 protei 41.3 20 0.00043 25.3 1.7 28 284-311 4-31 (84)
147 TIGR00891 2A0112 putative sial 39.6 2.9E+02 0.0063 25.0 12.2 18 179-196 59-76 (405)
148 PF05977 MFS_3: Transmembrane 39.3 3.8E+02 0.0082 26.2 26.7 36 268-303 355-391 (524)
149 KOG2533 Permease of the major 38.9 3.7E+02 0.0081 26.1 14.8 43 268-310 181-231 (495)
150 PF08042 PqqA: PqqA family; I 38.6 15 0.00032 18.2 0.5 7 1-7 1-7 (20)
151 PRK11715 inner membrane protei 38.5 3.6E+02 0.0077 25.7 10.9 59 127-194 323-383 (436)
152 PF09656 PGPGW: Putative trans 38.2 1.1E+02 0.0023 19.6 4.6 45 136-192 4-48 (53)
153 PRK11715 inner membrane protei 37.3 3.7E+02 0.0081 25.6 12.1 82 74-155 324-406 (436)
154 KOG2766 Predicted membrane pro 35.8 5.5 0.00012 34.4 -2.0 59 249-307 94-152 (336)
155 PF15102 TMEM154: TMEM154 prot 35.2 41 0.0009 26.4 2.8 22 290-311 66-87 (146)
156 PF06609 TRI12: Fungal trichot 34.6 4.8E+02 0.01 26.1 22.3 22 131-152 377-398 (599)
157 PRK09412 anaerobic C4-dicarbox 33.8 4.2E+02 0.0092 25.2 13.5 31 121-154 7-38 (433)
158 PRK11010 ampG muropeptide tran 31.6 4.7E+02 0.01 25.1 13.9 18 288-305 384-401 (491)
159 KOG4255 Uncharacterized conser 31.5 4.2E+02 0.0091 24.4 14.9 45 175-219 57-101 (439)
160 PF03616 Glt_symporter: Sodium 31.4 26 0.00057 32.4 1.5 11 122-132 72-82 (368)
161 COG4452 CreD Inner membrane pr 31.3 4.3E+02 0.0093 24.6 8.8 43 75-117 319-361 (443)
162 PF01102 Glycophorin_A: Glycop 30.9 32 0.0007 26.2 1.6 9 292-300 76-84 (122)
163 PF07214 DUF1418: Protein of u 30.2 1.3E+02 0.0029 21.7 4.4 8 290-297 50-57 (96)
164 KOG1623 Multitransmembrane pro 30.1 1.9E+02 0.004 25.1 6.2 20 287-306 188-207 (243)
165 TIGR00939 2a57 Equilibrative N 29.1 5.1E+02 0.011 24.6 11.5 15 289-303 178-192 (437)
166 PF06570 DUF1129: Protein of u 29.0 3.4E+02 0.0074 22.6 10.1 24 167-190 178-201 (206)
167 TIGR03810 arg_ornith_anti argi 28.4 5.2E+02 0.011 24.6 17.0 23 287-309 411-433 (468)
168 PF06570 DUF1129: Protein of u 27.9 3.6E+02 0.0078 22.5 11.5 31 78-108 143-173 (206)
169 COG3086 RseC Positive regulato 27.7 84 0.0018 24.7 3.3 23 258-280 73-95 (150)
170 PF10754 DUF2569: Protein of u 27.6 2E+02 0.0043 22.7 5.7 27 164-190 117-143 (149)
171 COG3086 RseC Positive regulato 27.5 1.2E+02 0.0027 23.8 4.2 24 105-128 72-95 (150)
172 PF04246 RseC_MucC: Positive r 26.6 91 0.002 24.0 3.5 20 261-280 69-88 (135)
173 TIGR01167 LPXTG_anchor LPXTG-m 26.5 1E+02 0.0022 17.0 2.8 16 286-301 11-26 (34)
174 PF01914 MarC: MarC family int 26.2 3.7E+02 0.0079 22.5 7.3 25 280-304 64-89 (203)
175 PRK12437 prolipoprotein diacyl 25.5 54 0.0012 28.8 2.3 21 285-305 235-255 (269)
176 TIGR02587 putative integral me 25.4 4.7E+02 0.01 23.0 9.4 27 271-297 80-109 (271)
177 PF14851 FAM176: FAM176 family 25.4 1.1E+02 0.0023 24.5 3.6 8 293-300 34-41 (153)
178 PF11023 DUF2614: Protein of u 25.2 2.1E+02 0.0045 21.4 4.8 25 130-154 5-29 (114)
179 PF12606 RELT: Tumour necrosis 24.2 88 0.0019 19.7 2.4 11 297-307 15-25 (50)
180 PF05977 MFS_3: Transmembrane 23.9 6.9E+02 0.015 24.4 24.3 51 11-62 4-55 (524)
181 COG3169 Uncharacterized protei 23.7 2.9E+02 0.0064 20.1 11.1 33 120-152 82-114 (116)
182 PHA03049 IMV membrane protein; 23.3 82 0.0018 20.9 2.2 22 289-310 6-27 (68)
183 PF08372 PRT_C: Plant phosphor 23.3 94 0.002 24.8 3.0 16 295-310 8-23 (156)
184 PF06123 CreD: Inner membrane 23.2 6.6E+02 0.014 23.9 11.3 81 74-154 318-399 (430)
185 KOG1330 Sugar transporter/spin 23.0 4.8E+02 0.01 25.2 8.0 49 164-212 284-335 (493)
186 PF11295 DUF3096: Protein of u 22.9 1.2E+02 0.0027 17.8 2.6 31 271-301 2-32 (39)
187 PRK10921 twin-arginine protein 22.9 1.3E+02 0.0027 26.4 4.0 17 12-28 12-28 (258)
188 PF01654 Bac_Ubq_Cox: Bacteria 22.2 6.9E+02 0.015 23.8 12.1 39 166-204 214-252 (436)
189 PF03631 Virul_fac_BrkB: Virul 22.2 5.1E+02 0.011 22.2 11.3 10 53-62 160-169 (260)
190 PF12822 DUF3816: Protein of u 22.0 4E+02 0.0088 21.1 8.4 27 22-48 39-65 (172)
191 TIGR00751 menA 1,4-dihydroxy-2 21.7 5.7E+02 0.012 22.7 10.9 60 79-139 106-168 (284)
192 PRK14774 lipoprotein signal pe 21.7 1.5E+02 0.0033 24.5 4.0 8 324-331 170-177 (185)
193 PF01864 DUF46: Putative integ 21.4 3.4E+02 0.0073 22.2 5.9 36 4-39 28-69 (175)
194 PF04246 RseC_MucC: Positive r 21.4 1.5E+02 0.0032 22.8 3.8 42 106-148 66-107 (135)
195 PF06166 DUF979: Protein of un 21.0 3.8E+02 0.0083 24.0 6.5 32 274-306 36-68 (308)
196 PRK01636 ccrB camphor resistan 20.9 3.7E+02 0.0081 20.2 7.5 46 49-94 16-61 (118)
197 PF12911 OppC_N: N-terminal TM 20.9 1.8E+02 0.0039 18.2 3.6 39 7-45 2-40 (56)
198 PF15108 TMEM37: Voltage-depen 20.8 3.1E+02 0.0068 21.9 5.3 56 138-193 92-147 (184)
199 COG4329 Predicted membrane pro 20.8 1.1E+02 0.0024 23.5 2.7 24 288-311 136-159 (160)
200 COG4736 CcoQ Cbb3-type cytochr 20.7 99 0.0022 20.3 2.2 22 290-311 15-36 (60)
201 CHL00196 psbY photosystem II p 20.6 1.3E+02 0.0029 17.4 2.4 19 168-186 6-24 (36)
202 COG3247 HdeD Uncharacterized c 20.4 5E+02 0.011 21.5 13.7 18 137-154 135-152 (185)
203 COG4858 Uncharacterized membra 20.2 5E+02 0.011 21.5 8.3 48 78-128 158-205 (226)
No 1
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=100.00 E-value=3.1e-38 Score=279.99 Aligned_cols=300 Identities=44% Similarity=0.819 Sum_probs=273.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHhhhh------hhHHHHHHHHHH
Q 019344 15 VTLRTLYLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYRRQR------LRVAWYWYLLLG 88 (342)
Q Consensus 15 ~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~p~~~~~~r~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~g 88 (342)
++||.|+++++|++++++.++.+..++.+..++.+.|...+++.+....+++.+....|+.. .+++|+++++.+
T Consensus 7 ~~~~~~~~~~lgQ~lsl~~~~t~~~s~~l~~~~~~~P~~Qs~~~Y~~l~~vy~~~~~~r~~~~~~~~~~~~~~w~y~lla 86 (334)
T PF06027_consen 7 FTRRFWIVLLLGQVLSLCITGTGTFSSLLANKGVNIPTFQSFFNYVLLALVYTPILLYRRGFKKWLKVLKRPWWKYFLLA 86 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCccCcHHHHHHHHHHHHHHHhhhhhhccccccchhhcchhHHHHHHHH
Confidence 57899999999999999999999999999999888899999999998888887776655433 477899999999
Q ss_pred HHHHHHHHHHHHHhhccchhHHHHhhhhhHHHHHHHHHHHhcccchHHHHHHHHHHHhhhhhheecCCCC--CCCCCCcc
Q 019344 89 FVDVQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDAGG--DGGGGSRP 166 (342)
Q Consensus 89 ~~~~~~~~~~~~al~~~~~~~~~ii~~~~pi~~~il~~l~l~e~~~~~~~~g~~l~~~Gv~l~~~~~~~~--~~~~~~~~ 166 (342)
++...++++.+.|++|++.+.++++.++..+++.+++++++|+|.++.|++|+++++.|+.++...|... ++..+++.
T Consensus 87 ~~Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~~~~~~~~~~~~~ 166 (334)
T PF06027_consen 87 LLDVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDVLSGSDSSSGSNP 166 (334)
T ss_pred HHHHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeecccccccCCCCCcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999988522 22345678
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhhhcccccccccchhHHHHHHHHHHHHHHH
Q 019344 167 LLGDVLVIAGTIFFATSNVGEEFFVKKKDRVEVVCMIGVYGLLVSAVQLSILELKSLESVEWSTNILLGFAGYAASSFMF 246 (342)
Q Consensus 167 ~~G~~l~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (342)
.+|+++++.+++.||+++++.|+..++.+..+...+.++++.+++.+...++|..+.+...|++.....+++...+.+..
T Consensus 167 i~GDll~l~~a~lya~~nV~~E~~v~~~~~~~~lg~~Glfg~ii~~iq~~ile~~~i~~~~w~~~~~~~~v~~~~~lf~~ 246 (334)
T PF06027_consen 167 ILGDLLALLGAILYAVSNVLEEKLVKKAPRVEFLGMLGLFGFIISGIQLAILERSGIESIHWTSQVIGLLVGYALCLFLF 246 (334)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHheehhhhhccCCChhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988888899988888888888888888888899999
Q ss_pred HHHHHHHHhhhhhHHHHhHhhhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHhhccCCCCCCCCC
Q 019344 247 YTLAPFVLKLSGATMFNLSLLTADMWAVVFRICFYHQKVDWLYFLAFGIVVIGLIIYSTTEKDLNPMP 314 (342)
Q Consensus 247 ~~~~~~~~~~~~a~~~~~~~~~~pv~~~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~~~~~~~ 314 (342)
|.+....++..+|+..++..++..+++++++++++|+++++..++|.++|++|.++|...+++.++++
T Consensus 247 y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~~~~~~~~ 314 (334)
T PF06027_consen 247 YSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAESPEEEAR 314 (334)
T ss_pred HHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccCCcccccc
Confidence 99999999999999999999999999999999999999999999999999999999998776655444
No 2
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=100.00 E-value=4.1e-32 Score=246.23 Aligned_cols=294 Identities=14% Similarity=0.136 Sum_probs=222.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHhh--hh-h---hHHHHHHHHHHHH
Q 019344 17 LRTLYLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYRR--QR-L---RVAWYWYLLLGFV 90 (342)
Q Consensus 17 ~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~p~~~~~~r~~~~~~~~~~~~~~~~--~~-~---~~~~~~~~~~g~~ 90 (342)
||.-+.+..+..+-+..++....++...+ ...+|....++|+.++.++++++.+.++ ++ . ++++..+.+.|++
T Consensus 9 ~~~~~~~~~~~~~q~~~~~~~~~~k~a~~-~G~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~~~~~~~~~~~~~l~l~g~~ 87 (358)
T PLN00411 9 RREAVFLTAMLATETSVVGISTLFKVATS-KGLNIYPFLGYSYLLASLLLLPSLFFTNRSRSLPPLSVSILSKIGLLGFL 87 (358)
T ss_pred hhccchHHHHHHHHHHHHHHHHHHHHHHH-CCCCccHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHH
Confidence 34455566677777888888877777764 5566788999999999888888765332 11 1 3466788888888
Q ss_pred HHHHHHHHHHHhhccchhHHHHhhhhhHHHHHHHHHHH------hcccchHHHHHHHHHHHhhhhhheecCCCC------
Q 019344 91 DVQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLF------LGTRYSLWQLLGAALCVLGLGLVLLSDAGG------ 158 (342)
Q Consensus 91 ~~~~~~~~~~al~~~~~~~~~ii~~~~pi~~~il~~l~------l~e~~~~~~~~g~~l~~~Gv~l~~~~~~~~------ 158 (342)
+...+.+++.|++|++++.++++.+++|+++.++++++ +|||+++++++|++++++|+.++...+...
T Consensus 88 g~~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~ 167 (358)
T PLN00411 88 GSMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFVASS 167 (358)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCcccccccc
Confidence 85457789999999999999999999999999999999 699999999999999999999987533200
Q ss_pred --------C---C-CCCCcchHHHHHHHHHHHHHHHHHHHHHHhhccCChH-HHHHHHHHHHHHHHHHHHHhhhcccccc
Q 019344 159 --------D---G-GGGSRPLLGDVLVIAGTIFFATSNVGEEFFVKKKDRV-EVVCMIGVYGLLVSAVQLSILELKSLES 225 (342)
Q Consensus 159 --------~---~-~~~~~~~~G~~l~l~aa~~~a~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (342)
. . ....+...|++++++++++||+|.++.|+..++.++. ...+++..++.+...++....+..+...
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~ 247 (358)
T PLN00411 168 PPYLNFRQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSV 247 (358)
T ss_pred cccccccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHhHHHHHHHHHHHHHHHHHHHHHccCCccc
Confidence 0 0 1112235699999999999999999999988887554 4455555555444433444443321111
Q ss_pred --cccchh-HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhHhhhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHh
Q 019344 226 --VEWSTN-ILLGFAGYAASSFMFYTLAPFVLKLSGATMFNLSLLTADMWAVVFRICFYHQKVDWLYFLAFGIVVIGLII 302 (342)
Q Consensus 226 --~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~pv~~~~~~~~~~~e~~~~~~~~G~~li~~g~~l 302 (342)
..++.. ..+.+.++. + .++|.+|++++++.++..+++..+++|+++++++++++||++++.+++|+++|+.|+++
T Consensus 248 ~~~~~~~~~~~i~y~~i~-t-~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l 325 (358)
T PLN00411 248 WIIHFDITLITIVTMAII-T-SVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYA 325 (358)
T ss_pred ceeccchHHHHHHHHHHH-H-HHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHH
Confidence 112222 234444443 4 46889999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCCCCC
Q 019344 303 YSTTEKDLNPM 313 (342)
Q Consensus 303 ~~~~~~~~~~~ 313 (342)
.++.++|+.++
T Consensus 326 ~~~~~~~~~~~ 336 (358)
T PLN00411 326 VMWGKANEEKD 336 (358)
T ss_pred HHhhhhhhhhh
Confidence 98866655433
No 3
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.98 E-value=6.5e-29 Score=221.74 Aligned_cols=269 Identities=14% Similarity=0.131 Sum_probs=207.1
Q ss_pred HHHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHHHHHHHHHHHhhhh--hhHHHHHHHHHHHHHHHH-HHHHHHHh-h
Q 019344 31 FTLALMSFTSSLIADL---GVDAPVTQSAFAYFSLALVYGGVLLYRRQR--LRVAWYWYLLLGFVDVQG-NFLVNKAY-Q 103 (342)
Q Consensus 31 l~~~~~~~~~~~~~~~---~~~~p~~~~~~r~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~~-~~~~~~al-~ 103 (342)
++.....|+++.+..| .+.+|...+++|+.++.++++++...++++ .+++++.....|.++... +.+++.+. +
T Consensus 13 ~~~~~~iWg~~~~~~K~~~~~~~p~~~~~~R~~~a~l~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 92 (292)
T PRK11272 13 LFALYIIWGSTYLVIRIGVESWPPLMMAGVRFLIAGILLLAFLLLRGHPLPTLRQWLNAALIGLLLLAVGNGMVTVAEHQ 92 (292)
T ss_pred HHHHHHHHhhHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3344444555555554 357899999999999988887776544432 356788888888887554 77888888 9
Q ss_pred ccchhHHHHhhhhhHHHHHHHHHHHhcccchHHHHHHHHHHHhhhhhheecCCCCCCCCCCcchHHHHHHHHHHHHHHHH
Q 019344 104 FSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDAGGDGGGGSRPLLGDVLVIAGTIFFATS 183 (342)
Q Consensus 104 ~~~~~~~~ii~~~~pi~~~il~~l~l~e~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~ 183 (342)
+.+++.++++.++.|+++.+++.+ +|||+++++++|++++++|+.++..++. . +....|++++++++++||.|
T Consensus 93 ~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~~~~--~----~~~~~G~l~~l~a~~~~a~~ 165 (292)
T PRK11272 93 NVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNSGGN--L----SGNPWGAILILIASASWAFG 165 (292)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhcCcc--c----ccchHHHHHHHHHHHHHHHH
Confidence 999999999999999999999986 6999999999999999999998865431 1 23467999999999999999
Q ss_pred HHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 019344 184 NVGEEFFVKKKDRVEVVCMIGVYGLLVSAVQLSILELKSLESVEWSTNILLGFAGYAASSFMFYTLAPFVLKLSGATMFN 263 (342)
Q Consensus 184 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 263 (342)
.+..|+..++ ++.....+....+.....+.....+.......+...+..+.+.+.. ++...|.++++++++.++...+
T Consensus 166 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~i~-~s~~~~~l~~~~~~~~~~~~~s 243 (292)
T PRK11272 166 SVWSSRLPLP-VGMMAGAAEMLAAGVVLLIASLLSGERLTALPTLSGFLALGYLAVF-GSIIAISAYMYLLRNVRPALAT 243 (292)
T ss_pred HHHHHhcCCC-cchHHHHHHHHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHH-HHHHHHHHHHHHHhhcCHHHHH
Confidence 9999997544 3344455555555554432222222211111223344566666666 7778889999999999999999
Q ss_pred hHhhhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHhhccCCC
Q 019344 264 LSLLTADMWAVVFRICFYHQKVDWLYFLAFGIVVIGLIIYSTTEK 308 (342)
Q Consensus 264 ~~~~~~pv~~~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~ 308 (342)
...+++|+++.+++++++||++++.+++|+++++.|+++.++.++
T Consensus 244 ~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~~~ 288 (292)
T PRK11272 244 SYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLGKY 288 (292)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999877544
No 4
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=99.97 E-value=4.9e-28 Score=216.10 Aligned_cols=279 Identities=15% Similarity=0.091 Sum_probs=211.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHhhhh-hhHHHHHHHHHHHHHHHH
Q 019344 16 TLRTLYLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYRRQR-LRVAWYWYLLLGFVDVQG 94 (342)
Q Consensus 16 ~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~p~~~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~ 94 (342)
+-+.++++++..+..+.++......+.... ..+|..+.++|+.++.++++++..+++++ .+++++..+..|++....
T Consensus 7 ~~~~~~~~~~~~la~~~~~~~~~~~K~~~~--~~~~~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 84 (293)
T PRK10532 7 KLPVWLPILLLLIAMASIQSGASLAKSLFP--LVGAPGVTALRLALGTLILIAIFKPWRLRFAKEQRLPLLFYGVSLGGM 84 (293)
T ss_pred ccccchHHHHHHHHHHHHHhhHHHHHHHHH--HcCHHHHHHHHHHHHHHHHHHHHhHHhccCCHHHHHHHHHHHHHHHHH
Confidence 345577777777777777666665555444 47899999999999988887766543333 366788888899887777
Q ss_pred HHHHHHHhhccchhHHHHhhhhhHHHHHHHHHHHhcccchHHHHHHHHHHHhhhhhheecCCCCCCCCCCcchHHHHHHH
Q 019344 95 NFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDAGGDGGGGSRPLLGDVLVI 174 (342)
Q Consensus 95 ~~~~~~al~~~~~~~~~ii~~~~pi~~~il~~l~l~e~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~~~~~~~G~~l~l 174 (342)
+.++++++++.|++.++++.++.|+++.+++. ||..+ ..++.++++|+.++..++. + .++.+..|+++++
T Consensus 85 ~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~~----~~~~~--~~~~~i~~~Gv~li~~~~~--~--~~~~~~~G~ll~l 154 (293)
T PRK10532 85 NYLFYLSIQTVPLGIAVALEFTGPLAVALFSS----RRPVD--FVWVVLAVLGLWFLLPLGQ--D--VSHVDLTGAALAL 154 (293)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHHHhc----CChHH--HHHHHHHHHHHheeeecCC--C--cccCChHHHHHHH
Confidence 88899999999999999999999999988763 55544 4556778999988775432 1 1233467999999
Q ss_pred HHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 019344 175 AGTIFFATSNVGEEFFVKKKDRVEVVCMIGVYGLLVSAVQLSILELKSLESVEWSTNILLGFAGYAASSFMFYTLAPFVL 254 (342)
Q Consensus 175 ~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (342)
+++++||.|.+..|+..++.++.... +....+.+... +....... ....++..+....+.+++ ++...|.++++++
T Consensus 155 ~aa~~~a~~~v~~r~~~~~~~~~~~~-~~~~~~~~~l~-~~~~~~~~-~~~~~~~~~~~~l~lgv~-~t~~~~~l~~~~~ 230 (293)
T PRK10532 155 GAGACWAIYILSGQRAGAEHGPATVA-IGSLIAALIFV-PIGALQAG-EALWHWSILPLGLAVAIL-STALPYSLEMIAL 230 (293)
T ss_pred HHHHHHHHHHHHHHHHhccCCchHHH-HHHHHHHHHHH-HHHHHccC-cccCCHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 99999999999999988777776653 44444444433 33332221 111223333344567776 8889999999999
Q ss_pred hhhhhHHHHhHhhhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHhhccCCCCC
Q 019344 255 KLSGATMFNLSLLTADMWAVVFRICFYHQKVDWLYFLAFGIVVIGLIIYSTTEKDL 310 (342)
Q Consensus 255 ~~~~a~~~~~~~~~~pv~~~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~~~ 310 (342)
++.++..++...++||+++.+++++++||++++.+++|+++|+.|+....+.++|+
T Consensus 231 ~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~~~~~ 286 (293)
T PRK10532 231 TRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLTIRRE 286 (293)
T ss_pred HhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 99999999999999999999999999999999999999999999999998766553
No 5
>PRK11689 aromatic amino acid exporter; Provisional
Probab=99.97 E-value=1.5e-28 Score=219.60 Aligned_cols=276 Identities=15% Similarity=0.139 Sum_probs=197.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH-HHHHHHH
Q 019344 23 LFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYRRQRLRVAWYWYLLLGFVDVQG-NFLVNKA 101 (342)
Q Consensus 23 ~~~~~~~al~~~~~~~~~~~~~~~~~~~p~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~a 101 (342)
++++....++|+......+... ...+|..+.++|+.++.+++.++.. +++.++++++..+.+.++... +.+.+.+
T Consensus 6 ~l~~l~a~~~Wg~~~~~~k~~~--~~~~P~~~~~~R~~~a~l~l~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~a 81 (295)
T PRK11689 6 TLIGLIAILLWSTMVGLIRGVS--ESLGPVGGAAMIYSVSGLLLLLTVG--FPRLRQFPKRYLLAGGLLFVSYEICLALS 81 (295)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH--ccCChHHHHHHHHHHHHHHHHHHcc--ccccccccHHHHHHHhHHHHHHHHHHHHH
Confidence 3344444444444443333322 3578999999999999888776542 222333333344444444444 6667777
Q ss_pred hhc----cchhHHHHhhhhhHHHHHHHHHHHhcccchHHHHHHHHHHHhhhhhheecCCCCC--C--CCCCcchHHHHHH
Q 019344 102 YQF----SSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDAGGD--G--GGGSRPLLGDVLV 173 (342)
Q Consensus 102 l~~----~~~~~~~ii~~~~pi~~~il~~l~l~e~~~~~~~~g~~l~~~Gv~l~~~~~~~~~--~--~~~~~~~~G~~l~ 173 (342)
+++ .++++++++.+++|+++.+++++++|||+++++++|++++++|+.++..++.+.+ + ........|++++
T Consensus 82 ~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~G~~~~ 161 (295)
T PRK11689 82 LGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGGDNGLSLAELINNIASNPLSYGLA 161 (295)
T ss_pred HHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecCCccchhhhhhhccccChHHHHHH
Confidence 754 5778889999999999999999999999999999999999999999987652100 0 0112345799999
Q ss_pred HHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHH
Q 019344 174 IAGTIFFATSNVGEEFFVKKKDRVEVVCMIGVYGLLVSAVQLSILELKSLESVEWSTNILLGFAGYAASSFMFYTLAPFV 253 (342)
Q Consensus 174 l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (342)
++++++||.|.++.|+..++.++..... ..+.+...++.. .+.......++..+..+.+.+ . ++...|.+++++
T Consensus 162 l~aa~~~A~~~v~~k~~~~~~~~~~~~~---~~~~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~~-~-~t~~~~~l~~~a 235 (295)
T PRK11689 162 FIGAFIWAAYCNVTRKYARGKNGITLFF---ILTALALWIKYF-LSPQPAMVFSLPAIIKLLLAA-A-AMGFGYAAWNVG 235 (295)
T ss_pred HHHHHHHHHHHHHHhhccCCCCchhHHH---HHHHHHHHHHHH-HhcCccccCCHHHHHHHHHHH-H-HHHHHHHHHHHH
Confidence 9999999999999999887777665422 222222222222 222222223333444455545 3 678889999999
Q ss_pred HhhhhhHHHHhHhhhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHhhccCCC
Q 019344 254 LKLSGATMFNLSLLTADMWAVVFRICFYHQKVDWLYFLAFGIVVIGLIIYSTTEK 308 (342)
Q Consensus 254 ~~~~~a~~~~~~~~~~pv~~~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~ 308 (342)
+++.++...+...+++|+++++++++++||++++.+++|+++|+.|+++....++
T Consensus 236 l~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~~~~ 290 (295)
T PRK11689 236 ILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWLATR 290 (295)
T ss_pred HHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhhhHh
Confidence 9999999999999999999999999999999999999999999999988876443
No 6
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=99.97 E-value=4.3e-28 Score=217.22 Aligned_cols=272 Identities=17% Similarity=0.164 Sum_probs=200.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH-HHHHHHHhhc
Q 019344 26 GQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYRRQRLRVAWYWYLLLGFVDVQG-NFLVNKAYQF 104 (342)
Q Consensus 26 ~~~~al~~~~~~~~~~~~~~~~~~~p~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~al~~ 104 (342)
....+++|+......+... ++.+|...+++|+.++.+.+.++..+++ .+++.....|++.... ..+++.++++
T Consensus 9 ~l~~~~~Wg~~~~~~k~~~--~~~~p~~~~~~R~~~a~~~l~~~~~~~~----~~~~~~~~~g~~~~~~~~~~~~~~~~~ 82 (299)
T PRK11453 9 ALLVVVVWGLNFVVIKVGL--HNMPPLMLAGLRFMLVAFPAIFFVARPK----VPLNLLLGYGLTISFGQFAFLFCAINF 82 (299)
T ss_pred HHHHHHHHhhhHHHHHHHH--hcCCHHHHHHHHHHHHHHHHHHHhcCCC----CchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555555554444333 3578999999999998766655543222 2234455556655555 5577889988
Q ss_pred -cchhHHHHhhhhhHHHHHHHHHHHhcccchHHHHHHHHHHHhhhhhheecCCCCCCCCCCcchHHHHHHHHHHHHHHHH
Q 019344 105 -SSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDAGGDGGGGSRPLLGDVLVIAGTIFFATS 183 (342)
Q Consensus 105 -~~~~~~~ii~~~~pi~~~il~~l~l~e~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~ 183 (342)
.+++.++++.+++|+++.+++++++|||++++++++++++++|+.++..++. + ..+.+..|+++++.++++||.|
T Consensus 83 ~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~~~--~--~~~~~~~G~~l~l~aal~~a~~ 158 (299)
T PRK11453 83 GMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIEDSL--N--GQHVAMLGFMLTLAAAFSWACG 158 (299)
T ss_pred cCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccccC--C--CcchhHHHHHHHHHHHHHHHHH
Confidence 5889999999999999999999999999999999999999999999986532 1 1123467999999999999999
Q ss_pred HHHHHHhhccCChHH---HHHHHHHHHHHHHHHHHHhhhccc-----ccccccchhHHHHHHHHHHHHHHHHHHHHHHHh
Q 019344 184 NVGEEFFVKKKDRVE---VVCMIGVYGLLVSAVQLSILELKS-----LESVEWSTNILLGFAGYAASSFMFYTLAPFVLK 255 (342)
Q Consensus 184 ~v~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (342)
.++.|+..++.+... ...+....+.+.........+... ....++..+..+.+.+.+ ++...|.+++++++
T Consensus 159 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~i~-~t~~~~~l~~~~l~ 237 (299)
T PRK11453 159 NIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYLAFV-ATIVGYGIWGTLLG 237 (299)
T ss_pred HHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 999999866543322 223333333222111111222211 122344455667777777 88888999999999
Q ss_pred hhhhHHHHhHhhhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHhhccCCC
Q 019344 256 LSGATMFNLSLLTADMWAVVFRICFYHQKVDWLYFLAFGIVVIGLIIYSTTEK 308 (342)
Q Consensus 256 ~~~a~~~~~~~~~~pv~~~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~ 308 (342)
+.++...+...+++|+++.+++++++||++++.+++|++++++|+++..++++
T Consensus 238 ~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~~~ 290 (299)
T PRK11453 238 RYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFGLR 290 (299)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcchh
Confidence 99999999999999999999999999999999999999999999998887654
No 7
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=99.97 E-value=1.3e-28 Score=221.21 Aligned_cols=257 Identities=15% Similarity=0.140 Sum_probs=200.6
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHH---Hhhhh-hhHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHhhhhhHHHHH
Q 019344 47 GVDAPVTQSAFAYFSLALVYGGVLL---YRRQR-LRVAWYWYLLLGFVDVQGNFLVNKAYQFSSITSVTLLDCCTIAWAI 122 (342)
Q Consensus 47 ~~~~p~~~~~~r~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~ii~~~~pi~~~ 122 (342)
....|...++.|+..+.+.+..... +++++ .+++++.++..|++....+.+.+.|++|++++.++++.+++|++++
T Consensus 27 ~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~s~s~~~li~~~~Pv~~~ 106 (302)
T TIGR00817 27 VFPYPYFKTLISLAVGSLYCLLSWSSGLPKRLKISSALLKLLLPVAIVHTIGHVTSNVSLSKVAVSFTHTIKAMEPFFSV 106 (302)
T ss_pred hCChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcchHHHH
Confidence 3567999999999888666554421 12222 2678999999999987779999999999999999999999999999
Q ss_pred HHHHHHhcccchHHHHHHHHHHHhhhhhheecCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhc--cCChHHHH
Q 019344 123 VLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDAGGDGGGGSRPLLGDVLVIAGTIFFATSNVGEEFFVK--KKDRVEVV 200 (342)
Q Consensus 123 il~~l~l~e~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~~~~~~--~~~~~~~~ 200 (342)
+++++++|||++++++.+++++++|+.+....+ .+.+..|++++++++++||+|.+..|+..+ +.|+.+..
T Consensus 107 ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~~~-------~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~ 179 (302)
T TIGR00817 107 VLSAFFLGQEFPSTLWLSLLPIVGGVALASDTE-------LSFNWAGFLSAMISNITFVSRNIFSKKAMTIKSLDKTNLY 179 (302)
T ss_pred HHHHHHhCCCCcHHHHHHHHHHHHHHhhhcCCc-------ccccHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccHH
Confidence 999999999999999999999999998764332 134577999999999999999999999888 78889999
Q ss_pred HHHHHHHHHHHHHHHHhhhccccccc---c----cch-hHH--HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhHhhhHH
Q 019344 201 CMIGVYGLLVSAVQLSILELKSLESV---E----WST-NIL--LGFAGYAASSFMFYTLAPFVLKLSGATMFNLSLLTAD 270 (342)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~----~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~p 270 (342)
.++...+.+...+.....+..+.... . +.. ... ....+.. +...++.+++.++++.++...++..+++|
T Consensus 180 ~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~sa~t~sv~~~l~p 258 (302)
T TIGR00817 180 AYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVSLVAAMG-FFHFYQQVAFMLLGRVSPLTHSVGNCMKR 258 (302)
T ss_pred HHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHHHHHHHH-HHHHHHHHHHHHHccCCchHHHHHhhhhh
Confidence 99887777766544333332111110 0 010 011 1111121 33334456667999999999999999999
Q ss_pred HHHHHHHHHHhcccccHHHHHHHHHHHHHHHhhccCCCCCC
Q 019344 271 MWAVVFRICFYHQKVDWLYFLAFGIVVIGLIIYSTTEKDLN 311 (342)
Q Consensus 271 v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~~~~ 311 (342)
+++++++++++||+++..+++|+++++.|+.++++.+++|+
T Consensus 259 v~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~~k~~~~ 299 (302)
T TIGR00817 259 VVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSRVKAQKP 299 (302)
T ss_pred hheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHHHhccCc
Confidence 99999999999999999999999999999999998654443
No 8
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.97 E-value=1.9e-27 Score=209.28 Aligned_cols=242 Identities=17% Similarity=0.067 Sum_probs=192.9
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH-HHHHHHHhhccchhHHHHhhhhhHHHHHHHHH
Q 019344 48 VDAPVTQSAFAYFSLALVYGGVLLYRRQRLRVAWYWYLLLGFVDVQG-NFLVNKAYQFSSITSVTLLDCCTIAWAIVLTW 126 (342)
Q Consensus 48 ~~~p~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~al~~~~~~~~~ii~~~~pi~~~il~~ 126 (342)
..+|....+.|...+.+++.+...++ +.+++++++...|.++... +.+++.|++|+++++++++.+++|+++.+++.
T Consensus 15 ~~~~~~~~~~r~~~~~l~l~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~~~~~ii~~~~P~~~~~~~~ 92 (260)
T TIGR00950 15 QVPLYFAVFRRLIFALLLLLPLLRRR--PPLKRLLRLLLLGALQIGVFYVLYFVAVKRLPVGEAALLLYLAPLYVTLLSD 92 (260)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhc--cCHhHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHhhhHHHHHHHHH
Confidence 45677777777777777776665544 4456777788888777666 88999999999999999999999999999999
Q ss_pred HHhcccchHHHHHHHHHHHhhhhhheecCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhccCChHH--HHHHHH
Q 019344 127 LFLGTRYSLWQLLGAALCVLGLGLVLLSDAGGDGGGGSRPLLGDVLVIAGTIFFATSNVGEEFFVKKKDRVE--VVCMIG 204 (342)
Q Consensus 127 l~l~e~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~~~~~~~~~~~~--~~~~~~ 204 (342)
+++|||+++++++|+.++++|+.++..++. .+.+..|+.+++.++++|+.+.+..|+..++.++.. ...+.+
T Consensus 93 l~~~e~~~~~~~~gi~i~~~Gv~li~~~~~------~~~~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~ 166 (260)
T TIGR00950 93 LMGKERPRKLVLLAAVLGLAGAVLLLSDGN------LSINPAGLLLGLGSGISFALGTVLYKRLVKKEGPELLQFTGWVL 166 (260)
T ss_pred HHccCCCcHHHHHHHHHHHHhHHhhccCCc------ccccHHHHHHHHHHHHHHHHHHHHHhHHhhcCCchHHHHHHHHH
Confidence 999999999999999999999999875431 245578999999999999999999999887777443 333445
Q ss_pred HHHHHHHHHHHHhhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhHhhhHHHHHHHHHHHHhccc
Q 019344 205 VYGLLVSAVQLSILELKSLESVEWSTNILLGFAGYAASSFMFYTLAPFVLKLSGATMFNLSLLTADMWAVVFRICFYHQK 284 (342)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~pv~~~~~~~~~~~e~ 284 (342)
..+.++.. +........ ...+...+....+.+.+ ++..+|.++++++++.++..++...+++|+++.+++++++||+
T Consensus 167 ~~~~~~l~-~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~ 243 (260)
T TIGR00950 167 LLGALLLL-PFAWFLGPN-PQALSLQWGALLYLGLI-GTALAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGET 243 (260)
T ss_pred HHHHHHHH-HHHHhcCCC-CCcchHHHHHHHHHHHH-HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 56655553 333332221 12233333445556665 7778889999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHHH
Q 019344 285 VDWLYFLAFGIVVIGL 300 (342)
Q Consensus 285 ~~~~~~~G~~li~~g~ 300 (342)
+++.++.|.++++.|+
T Consensus 244 ~~~~~~~G~~li~~g~ 259 (260)
T TIGR00950 244 LSLPQLIGGALIIAAV 259 (260)
T ss_pred CCHHHHHHHHHHHHhc
Confidence 9999999999999886
No 9
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=99.96 E-value=1.1e-30 Score=214.62 Aligned_cols=295 Identities=46% Similarity=0.867 Sum_probs=264.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Q 019344 15 VTLRTLYLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYRRQRLRVAWYWYLLLGFVDVQG 94 (342)
Q Consensus 15 ~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~p~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 94 (342)
++||+|+|+.+|++++++.+.....++.+++|+.+.|...+|..+...+++..++..+|++..+..|+.++++++...-+
T Consensus 12 ~tkk~li~~~LGQiLSL~~t~~a~tss~la~k~iN~Pt~QtFl~Y~LLalVY~~~~~fR~~~~~~~~~hYilla~~DVEa 91 (336)
T KOG2766|consen 12 STKKTLIGLGLGQILSLLITSTAFTSSELARKGINAPTSQTFLNYVLLALVYGPIMLFRRKYIKAKWRHYILLAFVDVEA 91 (336)
T ss_pred hchhhhheeeHHHHHHHHHHcchhhhHHHHhccCCCccHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHhhheeEEeecc
Confidence 38899999999999999999999999999999999999999999999999999999988888889999999999999999
Q ss_pred HHHHHHHhhccchhHHHHhhhhhHHHHHHHHHHHhcccchHHHHHHHHHHHhhhhhheecCCCCCC-CCCCcchHHHHHH
Q 019344 95 NFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDAGGDG-GGGSRPLLGDVLV 173 (342)
Q Consensus 95 ~~~~~~al~~~~~~~~~ii~~~~pi~~~il~~l~l~e~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~-~~~~~~~~G~~l~ 173 (342)
|++...|+||++...+..+.+-....+.+++++|+|.|..+.++.|+++|+.|++++..+|...++ +++.++.+|+.+.
T Consensus 92 Ny~vV~AyQyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~sDV~agd~aggsnp~~GD~lv 171 (336)
T KOG2766|consen 92 NYFVVKAYQYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFSDVHAGDRAGGSNPVKGDFLV 171 (336)
T ss_pred cEEEeeehhhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEeeeccccccCCCCCccCcEEE
Confidence 999999999999999999998888889999999999999999999999999999999998863333 3467889999999
Q ss_pred HHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHH
Q 019344 174 IAGTIFFATSNVGEEFFVKKKDRVEVVCMIGVYGLLVSAVQLSILELKSLESVEWSTNILLGFAGYAASSFMFYTLAPFV 253 (342)
Q Consensus 174 l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (342)
+++|-+||+.++..+.+.|+.|..+.+...+++|++++.+. ++.+..+.....|.+.... ++.+..++++.|.+.+..
T Consensus 172 i~GATlYaVSNv~EEflvkn~d~~elm~~lgLfGaIIsaIQ-~i~~~~~~~tl~w~~~i~~-yl~f~L~MFllYsl~pil 249 (336)
T KOG2766|consen 172 IAGATLYAVSNVSEEFLVKNADRVELMGFLGLFGAIISAIQ-FIFERHHVSTLHWDSAIFL-YLRFALTMFLLYSLAPIL 249 (336)
T ss_pred EecceeeeeccccHHHHHhcCcHHHHHHHHHHHHHHHHHHH-HhhhccceeeEeehHHHHH-HHHHHHHHHHHHHhhHHh
Confidence 99999999999999999999999999999999999999877 6778877777777654444 444667999999999999
Q ss_pred HhhhhhHHHHhHhhhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHhhccCCCCCCCC
Q 019344 254 LKLSGATMFNLSLLTADMWAVVFRICFYHQKVDWLYFLAFGIVVIGLIIYSTTEKDLNPM 313 (342)
Q Consensus 254 ~~~~~a~~~~~~~~~~pv~~~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~~~~~~ 313 (342)
++..+++..++..++.-.++++. ..||-..+|...+..+.+..|..+|..+++.+++.
T Consensus 250 ~k~~~aT~~nlslLTsDmwsl~i--~~FgYhv~wLY~laF~~i~~GliiYs~re~~~~e~ 307 (336)
T KOG2766|consen 250 IKTNSATMFNLSLLTSDMWSLLI--RTFGYHVDWLYFLAFATIATGLIIYSTREKDEEEL 307 (336)
T ss_pred eecCCceEEEhhHhHHHHHHHHH--HHHhcchhhhhHHHHHHHHHhhEEeeccccCcHhh
Confidence 99999999999999998999888 66777799999999999999999996655444443
No 10
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.96 E-value=7.2e-27 Score=208.89 Aligned_cols=270 Identities=14% Similarity=0.063 Sum_probs=192.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHhhh--hh------hHHHHHHHHHH
Q 019344 17 LRTLYLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYRRQ--RL------RVAWYWYLLLG 88 (342)
Q Consensus 17 ~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~p~~~~~~r~~~~~~~~~~~~~~~~~--~~------~~~~~~~~~~g 88 (342)
+++.+|.++..+.+++++......+.. ...+|.++.++|..++.+++.++...+++ .. ++++. ....+
T Consensus 4 ~~~~~g~~~~l~a~~~wg~~~~~~k~~---~~~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 79 (296)
T PRK15430 4 KQTRQGVLLALAAYFIWGIAPAYFKLI---YYVPADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKIF-MLAVS 79 (296)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcCHHHHH-HHHHH
Confidence 456678888888888888777666543 24679999999999998766665543221 11 11222 23344
Q ss_pred HHHHH-HHHHHHHHhhccchhHHHHhhhhhHHHHHHHHHHHhcccchHHHHHHHHHHHhhhhhheecCCCCCCCCCCcch
Q 019344 89 FVDVQ-GNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDAGGDGGGGSRPL 167 (342)
Q Consensus 89 ~~~~~-~~~~~~~al~~~~~~~~~ii~~~~pi~~~il~~l~l~e~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~~~~~~ 167 (342)
.++.. .+.++++|++++++++++++.++.|+++.+++++++|||+++++++|++++++|+.++..++. +.
T Consensus 80 ~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~~~~-------~~-- 150 (296)
T PRK15430 80 AVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLWTFG-------SL-- 150 (296)
T ss_pred HHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHcC-------Cc--
Confidence 44444 499999999999999999999999999999999999999999999999999999999875431 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCh--HHHHHHHHHHHHHHHHHHHHhhhccccccccc-ch-hHHHHHHHHHHHH
Q 019344 168 LGDVLVIAGTIFFATSNVGEEFFVKKKDR--VEVVCMIGVYGLLVSAVQLSILELKSLESVEW-ST-NILLGFAGYAASS 243 (342)
Q Consensus 168 ~G~~l~l~aa~~~a~~~v~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~ 243 (342)
..++++++++||.|.+..|+..++... .....+....+.... ....+.. ....+. .. .....+.... .+
T Consensus 151 --~~~~l~aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~g~-~t 223 (296)
T PRK15430 151 --PIIALGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYL---FAIADSS-TSHMGQNPMSLNLLLIAAGI-VT 223 (296)
T ss_pred --cHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHH---HHHccCC-cccccCCcHHHHHHHHHHHH-HH
Confidence 146888999999999999986543222 111222222222211 1111111 111111 11 1122222222 56
Q ss_pred HHHHHHHHHHHhhhhhHHHHhHhhhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHhhccC
Q 019344 244 FMFYTLAPFVLKLSGATMFNLSLLTADMWAVVFRICFYHQKVDWLYFLAFGIVVIGLIIYSTT 306 (342)
Q Consensus 244 ~~~~~~~~~~~~~~~a~~~~~~~~~~pv~~~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~ 306 (342)
...|.++++++++.++...+...+++|+++.+++++++||++++.+++|+++|+.|+.+...+
T Consensus 224 ~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~~ 286 (296)
T PRK15430 224 TVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVMD 286 (296)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 678899999999999999999999999999999999999999999999999999888777653
No 11
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=99.96 E-value=9.2e-26 Score=205.62 Aligned_cols=249 Identities=16% Similarity=0.163 Sum_probs=193.2
Q ss_pred Cc-hHHHHHHHHHHHHHHHHHHHH---Hhhhh---hhHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHhhhhhHHHH
Q 019344 49 DA-PVTQSAFAYFSLALVYGGVLL---YRRQR---LRVAWYWYLLLGFVDVQGNFLVNKAYQFSSITSVTLLDCCTIAWA 121 (342)
Q Consensus 49 ~~-p~~~~~~r~~~~~~~~~~~~~---~~~~~---~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~ii~~~~pi~~ 121 (342)
.+ |++++.+|++++.+++..+.. +++++ .+.+++.++..|+++...+...+.|+++++++.++++.+++|+++
T Consensus 75 ~~~P~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~llp~gl~~~~~~~~~~~sl~~~svs~~~iika~~Pvft 154 (350)
T PTZ00343 75 LPLPWTISSLQLFVGWLFALLYWATGFRKIPRIKSLKLFLKNFLPQGLCHLFVHFGAVISMGLGAVSFTHVVKAAEPVFT 154 (350)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHH
Confidence 45 999999999998665443322 11122 245788999999999988777889999999999999999999999
Q ss_pred HHHHHHHhcccchHHHHHHHHHHHhhhhhheecCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhccC-------
Q 019344 122 IVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDAGGDGGGGSRPLLGDVLVIAGTIFFATSNVGEEFFVKKK------- 194 (342)
Q Consensus 122 ~il~~l~l~e~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~~~~~~~~------- 194 (342)
++++++++|||++++++.+++++++|+.+....+. +.+..|+++++++++++|+++++.|+..++.
T Consensus 155 ~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~~~~-------~~~~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~ 227 (350)
T PTZ00343 155 ALLSILFLKQFLNLYAYLSLIPIVGGVALASVKEL-------HFTWLAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENL 227 (350)
T ss_pred HHHHHHHhCCCccHHHHHHHHHHHHHHHheecccc-------hhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccC
Confidence 99999999999999999999999999999886442 3457899999999999999999999988754
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHhhhccccc--------ccccchhHHHHHHHHHHHHHHHHHHHH----HHHhhhhhHHH
Q 019344 195 DRVEVVCMIGVYGLLVSAVQLSILELKSLE--------SVEWSTNILLGFAGYAASSFMFYTLAP----FVLKLSGATMF 262 (342)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~a~~~ 262 (342)
++.+...+....+.++.++.....|..... ...........+ ..+ .+...|.+++ .++++.++...
T Consensus 228 ~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~-~i~-~s~l~~~l~n~~~f~~l~~~s~~t~ 305 (350)
T PTZ00343 228 TASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYTKGIIIF-KIF-FSGVWYYLYNEVAFYCLGKVNQVTH 305 (350)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccchHHHHH-HHH-HHHHHHHHHHHHHHHHHhccchhHH
Confidence 344444444567776664333334432110 111111112222 222 4455566666 59999999999
Q ss_pred HhHhhhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHhhccC
Q 019344 263 NLSLLTADMWAVVFRICFYHQKVDWLYFLAFGIVVIGLIIYSTT 306 (342)
Q Consensus 263 ~~~~~~~pv~~~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~ 306 (342)
++...++|+++++++++++||++++.+++|+++++.|+++|++.
T Consensus 306 sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs~~ 349 (350)
T PTZ00343 306 AVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYSLF 349 (350)
T ss_pred HHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999875
No 12
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.94 E-value=2.2e-24 Score=191.61 Aligned_cols=240 Identities=15% Similarity=0.098 Sum_probs=172.0
Q ss_pred HHHHHHHHHHHHHHHHHHh-----hhhhhHHHH-HHHHHHHHHHHHHHHHHHHhhccchhHHHHhhhhhHHHHHHHHHHH
Q 019344 55 SAFAYFSLALVYGGVLLYR-----RQRLRVAWY-WYLLLGFVDVQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLF 128 (342)
Q Consensus 55 ~~~r~~~~~~~~~~~~~~~-----~~~~~~~~~-~~~~~g~~~~~~~~~~~~al~~~~~~~~~ii~~~~pi~~~il~~l~ 128 (342)
.+++.....+++.++...+ +++.+++++ .....++.....+.+.+.|+++.+++.++++.+++|+++.++++++
T Consensus 31 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~ 110 (281)
T TIGR03340 31 LWWALLAHSVLLTPYGLWYLAQVGWSRLPATFWLLLAISAVANMVYFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLT 110 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHH
Confidence 3555556666666665543 122233344 4455555555558899999999999999999999999999999999
Q ss_pred hcccchHHHHHHHHHHHhhhhhheecCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHH
Q 019344 129 LGTRYSLWQLLGAALCVLGLGLVLLSDAGGDGGGGSRPLLGDVLVIAGTIFFATSNVGEEFFVKKKDRVEVVCMIGVYGL 208 (342)
Q Consensus 129 l~e~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~ 208 (342)
+|||+++++++|+.+++.|+.++..++. . ..+..|+.++++++++|+.|.+..|+..++.++.........++.
T Consensus 111 ~~e~~~~~~~~g~~~~~~Gv~ll~~~~~--~----~~~~~g~~~~l~aal~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~ 184 (281)
T TIGR03340 111 LGETLSPLAWLGILIITLGLLVLGLSRF--A----QHRRKAYAWALAAALGTAIYSLSDKAAALGVPAFYSALGYLGIGF 184 (281)
T ss_pred HcCCCCHHHHHHHHHHHHHHHHHhcccc--c----ccchhHHHHHHHHHHHHHHhhhhccccccchhcccccHHHHHHHH
Confidence 9999999999999999999999876542 1 233468889999999999999998876544443221111112222
Q ss_pred HHHHHHHHh----hhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhHhhhHHHHHHHHHHHHhccc
Q 019344 209 LVSAVQLSI----LELKSLESVEWSTNILLGFAGYAASSFMFYTLAPFVLKLSGATMFNLSLLTADMWAVVFRICFYHQK 284 (342)
Q Consensus 209 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~pv~~~~~~~~~~~e~ 284 (342)
+....+... .+.......++ ......+.+.. .+...|.++++++++.++...+...+++|+++.+++++++||+
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~ 262 (281)
T TIGR03340 185 LAMGWPFLLLYLKRHGRSMFPYAR-QILPSATLGGL-MIGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNER 262 (281)
T ss_pred HHHHHHHHHHHHHHhccchhhhHH-HHHHHHHHHHH-HHHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCC
Confidence 221111111 11111111111 12233444444 7778899999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHHHHh
Q 019344 285 VDWLYFLAFGIVVIGLII 302 (342)
Q Consensus 285 ~~~~~~~G~~li~~g~~l 302 (342)
++..+++|+++++.|+.+
T Consensus 263 ~~~~~~iG~~lil~Gv~l 280 (281)
T TIGR03340 263 WYLTRLMGVCIIVAGLVV 280 (281)
T ss_pred ccHHHHHHHHHHHHhHHh
Confidence 999999999999999875
No 13
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=99.92 E-value=9e-22 Score=175.69 Aligned_cols=278 Identities=22% Similarity=0.282 Sum_probs=197.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHhhh-hh--hHHHHHHHHHHHHHHHH-
Q 019344 19 TLYLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYRRQ-RL--RVAWYWYLLLGFVDVQG- 94 (342)
Q Consensus 19 ~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~p~~~~~~r~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~g~~~~~~- 94 (342)
...+.....+.++.++......+....+ ..++....+.|.....+...+...+++. .. +.++++..+.+.+....
T Consensus 5 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (292)
T COG0697 5 LLLGLLALLLWGLLWGLSFIALKLAVES-LDPFLFAAALRFLIAALLLLPLLLLEPRGLRPALRPWLLLLLLALLGLALP 83 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc-cCChHHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHH
Confidence 3344444554555554444444443332 2345555555888777664433333221 12 22334455555555555
Q ss_pred HHHHHHHhhccchhHHHHhhhhhHHHHHHHHH-HHhcccchHHHHHHHHHHHhhhhhheecCCCCCCCCCCcchHHHHHH
Q 019344 95 NFLVNKAYQFSSITSVTLLDCCTIAWAIVLTW-LFLGTRYSLWQLLGAALCVLGLGLVLLSDAGGDGGGGSRPLLGDVLV 173 (342)
Q Consensus 95 ~~~~~~al~~~~~~~~~ii~~~~pi~~~il~~-l~l~e~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~~~~~~~G~~l~ 173 (342)
+.+++.++++.+++.++++.++.|+++.+++. +++|||++++++.++.++++|++++..++..+. . . ...|+.++
T Consensus 84 ~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~~--~-~-~~~g~~~~ 159 (292)
T COG0697 84 FLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGGG--I-L-SLLGLLLA 159 (292)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCcch--h-H-HHHHHHHH
Confidence 89999999999999999999999999999997 667999999999999999999999999874111 0 1 57999999
Q ss_pred HHHHHHHHHHHHHHHHhhccCChHHHHH-HHHHHHHHHHHHHHHhhhcccccccccchhHHHHHHHHHHHHHHHHHHHHH
Q 019344 174 IAGTIFFATSNVGEEFFVKKKDRVEVVC-MIGVYGLLVSAVQLSILELKSLESVEWSTNILLGFAGYAASSFMFYTLAPF 252 (342)
Q Consensus 174 l~aa~~~a~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (342)
+.+++++|++.+..|+.. +.++..... +... +......+....+.. ....+..+....+.+.. .+...+.++.+
T Consensus 160 l~a~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~-~~~i~~~~~~~ 234 (292)
T COG0697 160 LAAALLWALYTALVKRLS-RLGPVTLALLLQLL-LALLLLLLFFLSGFG--APILSRAWLLLLYLGVF-STGLAYLLWYY 234 (292)
T ss_pred HHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHH-HHHHHHHHHHhcccc--ccCCHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 999999999999999987 656655554 3322 222221122222211 22223334455556665 55577899999
Q ss_pred HHhhhhhHHHHhHhhhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHhhccC
Q 019344 253 VLKLSGATMFNLSLLTADMWAVVFRICFYHQKVDWLYFLAFGIVVIGLIIYSTT 306 (342)
Q Consensus 253 ~~~~~~a~~~~~~~~~~pv~~~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~ 306 (342)
+.++.++...+...+++|+++.++++++++|+++..+++|+++++.|+.+....
T Consensus 235 ~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~ 288 (292)
T COG0697 235 ALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR 288 (292)
T ss_pred HHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999999998876
No 14
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=99.91 E-value=7.8e-26 Score=187.28 Aligned_cols=262 Identities=17% Similarity=0.282 Sum_probs=208.7
Q ss_pred HHHhcC-CCchHHHHHHHHHHHHHHHHHHHHHhhhhh---hHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHhhhhh
Q 019344 42 LIADLG-VDAPVTQSAFAYFSLALVYGGVLLYRRQRL---RVAWYWYLLLGFVDVQGNFLVNKAYQFSSITSVTLLDCCT 117 (342)
Q Consensus 42 ~~~~~~-~~~p~~~~~~r~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~ii~~~~ 117 (342)
.++.|. .++|......|.++-.++..+-.+.+++.. +...++++++|+.+..+..+.|+|++|.+.++++++...+
T Consensus 54 vv~t~~~e~~p~e~a~~r~l~~mlit~pcliy~~~~v~gp~g~R~~LiLRg~mG~tgvmlmyya~~~mslaDA~vItFss 133 (346)
T KOG4510|consen 54 VVSTKVLENDPMELASFRLLVRMLITYPCLIYYMQPVIGPEGKRKWLILRGFMGFTGVMLMYYALMYMSLADAVVITFSS 133 (346)
T ss_pred HhhhhhhccChhHhhhhhhhhehhhhheEEEEEeeeeecCCCcEEEEEeehhhhhhHHHHHHHHHhhcchhheEEEEecC
Confidence 344443 467999998996666666555554444333 3455678999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHHhhhhhheecCC--CC---C--CCCCCcchHHHHHHHHHHHHHHHHHHHHHHh
Q 019344 118 IAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDA--GG---D--GGGGSRPLLGDVLVIAGTIFFATSNVGEEFF 190 (342)
Q Consensus 118 pi~~~il~~l~l~e~~~~~~~~g~~l~~~Gv~l~~~~~~--~~---~--~~~~~~~~~G~~l~l~aa~~~a~~~v~~~~~ 190 (342)
|++|.+++++++|||.++.+.++..+.+.||+++..+.. ++ + ++..+.+..|...++.++++-|--.++.|+.
T Consensus 134 Pvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPpFlFG~~t~g~~~s~~~~~~~gt~aai~s~lf~asvyIilR~i 213 (346)
T KOG4510|consen 134 PVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPPFLFGDTTEGEDSSQVEYDIPGTVAAISSVLFGASVYIILRYI 213 (346)
T ss_pred hHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCCcccCCCccccccccccccCCchHHHHHhHhhhhhHHHHHHHh
Confidence 999999999999999999999999999999999988764 11 1 1122456788999999999999999999999
Q ss_pred hccCChHHHHHHHHHHHHHHHHHHHHhhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhHhhhHH
Q 019344 191 VKKKDRVEVVCMIGVYGLLVSAVQLSILELKSLESVEWSTNILLGFAGYAASSFMFYTLAPFVLKLSGATMFNLSLLTAD 270 (342)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~p 270 (342)
.|+.+......+..+++.+.+++........+.+.-. ..+..... .++.+++.+.+.+.+++...+...++..+++.
T Consensus 214 Gk~~h~~msvsyf~~i~lV~s~I~~~~ig~~~lP~cg-kdr~l~~~--lGvfgfigQIllTm~lQiErAGpvaim~~~dv 290 (346)
T KOG4510|consen 214 GKNAHAIMSVSYFSLITLVVSLIGCASIGAVQLPHCG-KDRWLFVN--LGVFGFIGQILLTMGLQIERAGPVAIMTYTDV 290 (346)
T ss_pred hccccEEEEehHHHHHHHHHHHHHHhhccceecCccc-cceEEEEE--ehhhhhHHHHHHHHHhhhhccCCeehhhHHHH
Confidence 8998888777888888888877665555544444321 11222222 33367788899999999999999999999999
Q ss_pred HHHHHHHHHHhcccccHHHHHHHHHHHHHHHhhccC
Q 019344 271 MWAVVFRICFYHQKVDWLYFLAFGIVVIGLIIYSTT 306 (342)
Q Consensus 271 v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~ 306 (342)
++++++++++|||.|+++.++|+++++.+.+.....
T Consensus 291 vfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v~~a~~ 326 (346)
T KOG4510|consen 291 VFAFFWQVLFFGHWPTIWSWVGAVMVVSSTVWVALK 326 (346)
T ss_pred HHHHHHHHHHhcCCChHHHhhceeeeehhHHHHHHH
Confidence 999999999999999999999999999887766543
No 15
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.91 E-value=2.2e-21 Score=170.17 Aligned_cols=241 Identities=15% Similarity=0.065 Sum_probs=169.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHH-hh-h----hh----hHH-HHHHHHHHHH
Q 019344 22 LLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLY-RR-Q----RL----RVA-WYWYLLLGFV 90 (342)
Q Consensus 22 ~~~~~~~~al~~~~~~~~~~~~~~~~~~~p~~~~~~r~~~~~~~~~~~~~~-~~-~----~~----~~~-~~~~~~~g~~ 90 (342)
|+++....+++++..+...+.. ...+|.++.++|..++.+++.++... ++ + +. +++ +......|++
T Consensus 3 g~~~~i~a~~~wg~~~~~~k~~---~~~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 79 (256)
T TIGR00688 3 GIIVSLLASFLFGYMYYYSKLL---KPLPATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLL 79 (256)
T ss_pred cHHHHHHHHHHHHHHHHHHHHh---ccCCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHH
Confidence 6677777777777777666652 24789999999999998776665422 11 1 11 112 3346677777
Q ss_pred HHHHHHHHHHHhhccchhHHHHhhhhhHHHHHHHHHHHhcccchHHHHHHHHHHHhhhhhheecCCCCCCCCCCcchHHH
Q 019344 91 DVQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDAGGDGGGGSRPLLGD 170 (342)
Q Consensus 91 ~~~~~~~~~~al~~~~~~~~~ii~~~~pi~~~il~~l~l~e~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~~~~~~~G~ 170 (342)
....+.++++|++++++++++++.+++|+++++++++++|||++++++++++++++|+.++..++. +..
T Consensus 80 ~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~~~~-------~~~---- 148 (256)
T TIGR00688 80 IGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIVLKG-------SLP---- 148 (256)
T ss_pred HHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHcC-------Cch----
Confidence 777799999999999999999999999999999999999999999999999999999998875431 111
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhhhccccccccc-chhHHHHHHHHHHHHHHHHHH
Q 019344 171 VLVIAGTIFFATSNVGEEFFVKKKDRVEVVCMIGVYGLLVSAVQLSILELKSLESVEW-STNILLGFAGYAASSFMFYTL 249 (342)
Q Consensus 171 ~l~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 249 (342)
.++++++++||.|.+..|+..++ +........ ..............+....+..+. ..+..+.+.+. .+..+|.+
T Consensus 149 ~~~l~aa~~~a~~~i~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~--~t~i~~~l 224 (256)
T TIGR00688 149 WEALVLAFSFTAYGLIRKALKNT-DLAGFCLET-LSLMPVAIYYLLQTDFATVQQTNPFPIWLLLVLAGL--ITGTPLLA 224 (256)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCC-CcchHHHHH-HHHHHHHHHHHHHhccCcccccCchhHHHHHHHHHH--HHHHHHHH
Confidence 46789999999999999986543 332222111 111112111111111111111111 13344444454 46678999
Q ss_pred HHHHHhhhhhHHHHhHhhhHHHHHHHHHHHH
Q 019344 250 APFVLKLSGATMFNLSLLTADMWAVVFRICF 280 (342)
Q Consensus 250 ~~~~~~~~~a~~~~~~~~~~pv~~~~~~~~~ 280 (342)
+++++++.++..++...+++|+++++++.+.
T Consensus 225 ~~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~ 255 (256)
T TIGR00688 225 FVIAANRLPLNLLGLLQYIGPTIMMLCVSFL 255 (256)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999874
No 16
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=99.90 E-value=5.7e-21 Score=171.36 Aligned_cols=276 Identities=18% Similarity=0.244 Sum_probs=214.9
Q ss_pred HHHHHHHHHhcCCCc--hHHHHHHHHHHHHHHHHHHHHHhh--hhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHH
Q 019344 36 MSFTSSLIADLGVDA--PVTQSAFAYFSLALVYGGVLLYRR--QRLRVAWYWYLLLGFVDVQGNFLVNKAYQFSSITSVT 111 (342)
Q Consensus 36 ~~~~~~~~~~~~~~~--p~~~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~ 111 (342)
.+..-..+..+.... |..+++.++....+.........+ ++.+.+++.+...+++......+.+.|++|+|.....
T Consensus 15 ~g~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~i~~p~~~ 94 (303)
T PF08449_consen 15 YGILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFKFPKSRKIPLKKYAILSFLFFLASVLSNAALKYISYPTQI 94 (303)
T ss_pred HHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhccccCCCcChHHHHHHHHHHHHHHHHHHHHHHHhCChHHHH
Confidence 333444555554444 999999999888776666554333 3446788999999999999999999999999999999
Q ss_pred HhhhhhHHHHHHHHHHHhcccchHHHHHHHHHHHhhhhhheecCCCCCCCCC---CcchHHHHHHHHHHHHHHHHHHHHH
Q 019344 112 LLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDAGGDGGGG---SRPLLGDVLVIAGTIFFATSNVGEE 188 (342)
Q Consensus 112 ii~~~~pi~~~il~~l~l~e~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~~---~~~~~G~~l~l~aa~~~a~~~v~~~ 188 (342)
+++++.|+++++++.+++|+|.+++++.++++..+|+.+....+..+....+ .....|+.+.+.+.++.|...+.+|
T Consensus 95 ~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~~~~~~~~~~~~G~~ll~~sl~~~a~~~~~qe 174 (303)
T PF08449_consen 95 VFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSSSSNSSSFSSALGIILLLLSLLLDAFTGVYQE 174 (303)
T ss_pred HHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeecccccccccccccccchhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999988752222111 2234599999999999999999999
Q ss_pred Hhhcc--CChHHHHHHHHHHHHHHHHHHHHhhh---ccccccc-ccchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 019344 189 FFVKK--KDRVEVVCMIGVYGLLVSAVQLSILE---LKSLESV-EWSTNILLGFAGYAASSFMFYTLAPFVLKLSGATMF 262 (342)
Q Consensus 189 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 262 (342)
+..++ .++.+.+.+.+.++.++..+...... ..+.... ..........+....++..+........++.++...
T Consensus 175 ~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s~~~~~g~~~i~~~~~~~~al~~ 254 (303)
T PF08449_consen 175 KLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFSLTGALGQFFIFYLIKKFSALTT 254 (303)
T ss_pred HHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhh
Confidence 98876 56677888888888887765544421 1111111 111112222233333555666677778999999999
Q ss_pred HhHhhhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHhhccCCCCCC
Q 019344 263 NLSLLTADMWAVVFRICFYHQKVDWLYFLAFGIVVIGLIIYSTTEKDLN 311 (342)
Q Consensus 263 ~~~~~~~pv~~~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~~~~ 311 (342)
++...++.+++++++++++++++++.+++|.++++.|..++.+.++|++
T Consensus 255 t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~~~~k~~ 303 (303)
T PF08449_consen 255 TIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSYAKKKKN 303 (303)
T ss_pred hhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHHhhccCC
Confidence 9999999999999999999999999999999999999999999877653
No 17
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=99.89 E-value=4e-20 Score=152.57 Aligned_cols=251 Identities=17% Similarity=0.065 Sum_probs=199.5
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHhhhhh-hHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHhhhhhHHHHHHHHH
Q 019344 48 VDAPVTQSAFAYFSLALVYGGVLLYRRQRL-RVAWYWYLLLGFVDVQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTW 126 (342)
Q Consensus 48 ~~~p~~~~~~r~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~ii~~~~pi~~~il~~ 126 (342)
...|...+.+|..++.++++.+.+..++++ +++|+.....|......|.++|.+++.+|.+.+..+.++-|+.++.++.
T Consensus 37 ~vG~~g~t~lRl~~aaLIll~l~RPwr~r~~~~~~~~~~~yGvsLg~MNl~FY~si~riPlGiAVAiEF~GPL~vA~~~s 116 (292)
T COG5006 37 LVGAAGVTALRLAIAALILLALFRPWRRRLSKPQRLALLAYGVSLGGMNLLFYLSIERIPLGIAVAIEFTGPLAVALLSS 116 (292)
T ss_pred ccChhhHHHHHHHHHHHHHHHHhhHHHhccChhhhHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhccHHHHHHHhc
Confidence 456899999999999999999888655555 8899999999999999999999999999999999999999998877665
Q ss_pred HHhcccchHHHHHHHHHHHhhhhhheecCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHH
Q 019344 127 LFLGTRYSLWQLLGAALCVLGLGLVLLSDAGGDGGGGSRPLLGDVLVIAGTIFFATSNVGEEFFVKKKDRVEVVCMIGVY 206 (342)
Q Consensus 127 l~l~e~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~ 206 (342)
- +.++.+.+.+++.|+.++.-... +.+..+..|..+++.++.+|+.|.+..||..+..+.......-+.+
T Consensus 117 R------r~~d~vwvaLAvlGi~lL~p~~~----~~~~lDp~Gv~~Al~AG~~Wa~YIv~G~r~g~~~~g~~g~a~gm~v 186 (292)
T COG5006 117 R------RLRDFVWVALAVLGIWLLLPLGQ----SVWSLDPVGVALALGAGACWALYIVLGQRAGRAEHGTAGVAVGMLV 186 (292)
T ss_pred c------chhhHHHHHHHHHHHHhheeccC----CcCcCCHHHHHHHHHHhHHHHHHHHHcchhcccCCCchHHHHHHHH
Confidence 3 45677778888899988876552 1336779999999999999999999999987655555555555566
Q ss_pred HHHHHHHHHHhhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhHhhhHHHHHHHHHHHHhccccc
Q 019344 207 GLLVSAVQLSILELKSLESVEWSTNILLGFAGYAASSFMFYTLAPFVLKLSGATMFNLSLLTADMWAVVFRICFYHQKVD 286 (342)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~pv~~~~~~~~~~~e~~~ 286 (342)
+.++.+ |+-..... ..-+++......+.+++. ++..-|.+=..++++.+....+....+||.++.+.+++++||.+|
T Consensus 187 Aaviv~-Pig~~~ag-~~l~~p~ll~laLgvavl-SSalPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls 263 (292)
T COG5006 187 AALIVL-PIGAAQAG-PALFSPSLLPLALGVAVL-SSALPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLT 263 (292)
T ss_pred HHHHHh-hhhhhhcc-hhhcChHHHHHHHHHHHH-hcccchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCC
Confidence 666653 44332211 111223322333445555 888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCCC
Q 019344 287 WLYFLAFGIVVIGLIIYSTTEKDLN 311 (342)
Q Consensus 287 ~~~~~G~~li~~g~~l~~~~~~~~~ 311 (342)
+.|+.|++.|+.+..-.+...+|+.
T Consensus 264 ~~qwlaI~~ViaAsaG~~lt~~~~~ 288 (292)
T COG5006 264 LIQWLAIAAVIAASAGSTLTARKPA 288 (292)
T ss_pred HHHHHHHHHHHHHHhccccccCCCC
Confidence 9999999999999886666555443
No 18
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=99.86 E-value=9.6e-20 Score=158.45 Aligned_cols=295 Identities=21% Similarity=0.239 Sum_probs=218.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHHHHHHHHH---------Hh--hh--------
Q 019344 16 TLRTLYLLFLGQLVSFTLALMSFTSSLIADLGV-DAPVTQSAFAYFSLALVYGGVLL---------YR--RQ-------- 75 (342)
Q Consensus 16 ~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~-~~p~~~~~~r~~~~~~~~~~~~~---------~~--~~-------- 75 (342)
+.|...|+++-.++.++|...+-..+.++.... ..|++.++..-....+.+.++.. +| +.
T Consensus 9 ~~r~~lGl~lL~~V~viWV~SSeLT~~if~~~~f~kPFfiTY~~ts~fivYL~~~~~~d~~~~~~~~R~~~~~~~~~~e~ 88 (416)
T KOG2765|consen 9 RWRWTLGLVLLLLVVVIWVASSELTQSIFEDYNFRKPFFITYLKTSLFIVYLPPFILIDAPWRILETRSKRSNHAIMEEA 88 (416)
T ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhcccCCceeEeeecccceehhhhhhhhhcchhhhhhhhccccchhhhhhh
Confidence 456777887777777888888888888877543 46888876665444444443221 00 00
Q ss_pred -----------------------------------------------------hhh------------HHHHHHHHHHHH
Q 019344 76 -----------------------------------------------------RLR------------VAWYWYLLLGFV 90 (342)
Q Consensus 76 -----------------------------------------------------~~~------------~~~~~~~~~g~~ 90 (342)
+.| +..+..+..+.+
T Consensus 89 d~e~y~~~~~~~~~~~~~l~~~~~~~~~~~~l~s~~~~~~~s~~~e~~~~~~~~~rs~l~~~~~~t~~~~ak~sl~fc~l 168 (416)
T KOG2765|consen 89 DAEGYFSACTTDKTMESGLSGPESVPDKSPLLGSGEEEKPESTNLEVREKANTKKRSNLKERGKLTATQTAKLSLFFCPL 168 (416)
T ss_pred hhhccccccccccccccccCCceeeeccccccccccccCCCCccccccccCCcccccchhhhhhhHHHHHHHHHHHHHHH
Confidence 001 123455777888
Q ss_pred HHHHHHHHHHHhhccchhHHHHhhhhhHHHHHHHHHHHhcccchHHHHHHHHHHHhhhhhheecCC-CCCCCCCCcchHH
Q 019344 91 DVQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDA-GGDGGGGSRPLLG 169 (342)
Q Consensus 91 ~~~~~~~~~~al~~~~~~~~~ii~~~~pi~~~il~~l~l~e~~~~~~~~g~~l~~~Gv~l~~~~~~-~~~~~~~~~~~~G 169 (342)
.+..+++++.|+++++++..+++.+++.+||..++.++.+||+++.+.+++.+.+.|++++..++. ++++........|
T Consensus 169 WF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~~~~~~a~~~llG 248 (416)
T KOG2765|consen 169 WFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQNSDLPASRPLLG 248 (416)
T ss_pred HHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccccccCCccchhHH
Confidence 888899999999999999999999999999999999999999999999999999999999999875 2233345566999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccC-ChHHHHHHHH---HHHHHHHHHHHHhhhccccccccc--chhH-HHHHHHHHHH
Q 019344 170 DVLVIAGTIFFATSNVGEEFFVKKK-DRVEVVCMIG---VYGLLVSAVQLSILELKSLESVEW--STNI-LLGFAGYAAS 242 (342)
Q Consensus 170 ~~l~l~aa~~~a~~~v~~~~~~~~~-~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~ 242 (342)
.++++++|+.||+|.++.||...+. ....+..+.+ ++..++..+++.+.+....+..+. .... .+.+.+.. .
T Consensus 249 ~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F~lP~~~q~~~vv~~~li-g 327 (416)
T KOG2765|consen 249 NLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERFELPSSTQFSLVVFNNLI-G 327 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCcccCCCCceeEeeeHhhHH-H
Confidence 9999999999999999999988776 3555444444 444444443444443322222221 1122 23333433 6
Q ss_pred HHHHHHHHHHHHhhhhhHHHHhHhhhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHhhccCCCCCC
Q 019344 243 SFMFYTLAPFVLKLSGATMFNLSLLTADMWAVVFRICFYHQKVDWLYFLAFGIVVIGLIIYSTTEKDLN 311 (342)
Q Consensus 243 ~~~~~~~~~~~~~~~~a~~~~~~~~~~pv~~~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~~~~ 311 (342)
++..-.+|.++.-..++.++.+.+.++...+++.+.++-+..+++.+++|.+.|++|.++.++..+...
T Consensus 328 tvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~~~~~ 396 (416)
T KOG2765|consen 328 TVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNISSENSK 396 (416)
T ss_pred HHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheeccccccc
Confidence 777778888899999999999988888899999999999999999999999999999999998664443
No 19
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=99.86 E-value=2.1e-18 Score=146.38 Aligned_cols=275 Identities=13% Similarity=0.057 Sum_probs=201.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHH--Hhhhhh------hHHHHHHHHHH
Q 019344 17 LRTLYLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLL--YRRQRL------RVAWYWYLLLG 88 (342)
Q Consensus 17 ~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~p~~~~~~r~~~~~~~~~~~~~--~~~~~~------~~~~~~~~~~g 88 (342)
|+..+|++++..+.++++..-...+.+. ..++.++...|...+..++..... ++++.. ++.+..+.+.+
T Consensus 3 ~~~~~Gil~~l~Ay~lwG~lp~y~kll~---~~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a 79 (293)
T COG2962 3 KDSRKGILLALLAYLLWGLLPLYFKLLE---PLPATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTA 79 (293)
T ss_pred CcccchhHHHHHHHHHHHHHHHHHHHHc---cCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHH
Confidence 4566799999888888777766655543 356777887777666555444332 333322 22444555666
Q ss_pred HHHHHHHHHHHHHhhccchhHHHHhhhhhHHHHHHHHHHHhcccchHHHHHHHHHHHhhhhhheecCCCCCCCCCCcchH
Q 019344 89 FVDVQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDAGGDGGGGSRPLL 168 (342)
Q Consensus 89 ~~~~~~~~~~~~al~~~~~~~~~ii~~~~pi~~~il~~l~l~e~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~~~~~~~ 168 (342)
.+.......+.+|.++..+-+++.-++.+|++.++++++|+|||+++.|++++.++.+||........ +.+
T Consensus 80 ~li~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~g-------~lp-- 150 (293)
T COG2962 80 LLIGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLLG-------SLP-- 150 (293)
T ss_pred HHHHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHcC-------CCc--
Confidence 66666678899999999999999999999999999999999999999999999999999999988763 222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhhhcccccccccchhHHHHHHHHHHHHHHHHH
Q 019344 169 GDVLVIAGTIFFATSNVGEEFFVKKKDRVEVVCMIGVYGLLVSAVQLSILELKSLESVEWSTNILLGFAGYAASSFMFYT 248 (342)
Q Consensus 169 G~~l~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (342)
..++.-|++|+.|..+-|+ -+.|+.+-......+-...+++.....+.+.......+.....++...+..+.....
T Consensus 151 --wval~la~sf~~Ygl~RK~--~~v~a~~g~~lE~l~l~p~al~yl~~l~~~~~~~~~~~~~~~~LLv~aG~vTavpL~ 226 (293)
T COG2962 151 --WVALALALSFGLYGLLRKK--LKVDALTGLTLETLLLLPVALIYLLFLADSGQFLQQNANSLWLLLVLAGLVTAVPLL 226 (293)
T ss_pred --HHHHHHHHHHHHHHHHHHh--cCCchHHhHHHHHHHHhHHHHHHHHHHhcCchhhhcCCchHHHHHHHhhHHHHHHHH
Confidence 4566778899999887665 355666655555555555543333222322210111222233333344446667778
Q ss_pred HHHHHHhhhhhHHHHhHhhhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHhhccCC
Q 019344 249 LAPFVLKLSGATMFNLSLLTADMWAVVFRICFYHQKVDWLYFLAFGIVVIGLIIYSTTE 307 (342)
Q Consensus 249 ~~~~~~~~~~a~~~~~~~~~~pv~~~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~ 307 (342)
++..+.++.+-...++..|.+|..-.+++++++||+++..++...++|.+|+.++..+.
T Consensus 227 lf~~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~d~ 285 (293)
T COG2962 227 LFAAAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSIDG 285 (293)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999998754
No 20
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=99.86 E-value=8.1e-19 Score=156.03 Aligned_cols=270 Identities=13% Similarity=0.058 Sum_probs=187.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHH-HHHhhhh--hhHHHHHHHHHHHHHHHHHHHHH
Q 019344 23 LFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGV-LLYRRQR--LRVAWYWYLLLGFVDVQGNFLVN 99 (342)
Q Consensus 23 ~~~~~~~al~~~~~~~~~~~~~~~~~~~p~~~~~~r~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~ 99 (342)
+++..+.+++++..+...+.+. ..++.+.. |..++.+++..+ ...+.++ .++.+..-++.|+....++.+++
T Consensus 3 ~l~~lia~~~wGs~g~~~k~~~---g~~~~~~~--~~~~g~l~~~~~~~~~~~~~~~~~~~~~~g~l~G~~w~ig~~~~~ 77 (290)
T TIGR00776 3 ILIALIPALFWGSFVLINVKIG---GGPYSQTL--GTTFGALILSIAIAIFVLPEFWALSIFLVGLLSGAFWALGQINQF 77 (290)
T ss_pred hHHHHHHHHHHhhhHHHHhccC---CCHHHHHH--HHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHhhhhhHH
Confidence 4455555555555555554433 23333333 555554443332 2222212 13444555666777777799999
Q ss_pred HHhhccchhHHHHhhh-hhHHHHHHHHHHHhcccchHHH----HHHHHHHHhhhhhheecCCCCCCCCC-CcchHHHHHH
Q 019344 100 KAYQFSSITSVTLLDC-CTIAWAIVLTWLFLGTRYSLWQ----LLGAALCVLGLGLVLLSDAGGDGGGG-SRPLLGDVLV 173 (342)
Q Consensus 100 ~al~~~~~~~~~ii~~-~~pi~~~il~~l~l~e~~~~~~----~~g~~l~~~Gv~l~~~~~~~~~~~~~-~~~~~G~~l~ 173 (342)
.|.++.+++.+..+.+ +++++..+.+.+++|||.++++ .+|++++++|++++...+.++.++.+ .+...|+.++
T Consensus 78 ~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~~~~~~~~~~~~~~~Gi~~~ 157 (290)
T TIGR00776 78 KSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSKDKSAGIKSEFNFKKGILLL 157 (290)
T ss_pred HHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEeccccccccccccchhhHHHHH
Confidence 9999999999998887 9999999999999999999999 99999999999998776531111111 2337899999
Q ss_pred HHHHHHHHHHHHHHHHhhccCChHHHHHHHHH---HHHHHHHHHHHhhhcccccccccchhHHHHHHHHHHHHHHHHHHH
Q 019344 174 IAGTIFFATSNVGEEFFVKKKDRVEVVCMIGV---YGLLVSAVQLSILELKSLESVEWSTNILLGFAGYAASSFMFYTLA 250 (342)
Q Consensus 174 l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (342)
+.++++|+.|.+..|+. +.+|.+..+.+.. .+..+...+. .. . ++............|.. ...+|.++
T Consensus 158 l~sg~~y~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~---~~-~-~~~~~~~~~~~~~~Gi~--~~ia~~~y 228 (290)
T TIGR00776 158 LMSTIGYLVYVVVAKAF--GVDGLSVLLPQAIGMVIGGIIFNLGH---IL-A-KPLKKYAILLNILPGLM--WGIGNFFY 228 (290)
T ss_pred HHHHHHHHHHHHHHHHc--CCCcceehhHHHHHHHHHHHHHHHHH---hc-c-cchHHHHHHHHHHHHHH--HHHHHHHH
Confidence 99999999999999975 4777777555532 2222221111 10 0 11111111122224443 57778888
Q ss_pred HHHHh-hhhhHHHHhHhhhHHHHHHHHHHHHhcccccHHHH----HHHHHHHHHHHhhccC
Q 019344 251 PFVLK-LSGATMFNLSLLTADMWAVVFRICFYHQKVDWLYF----LAFGIVVIGLIIYSTT 306 (342)
Q Consensus 251 ~~~~~-~~~a~~~~~~~~~~pv~~~~~~~~~~~e~~~~~~~----~G~~li~~g~~l~~~~ 306 (342)
..+.+ +.++...+...+.||+.+.+++++++||..++.|+ +|+++++.|+.+....
T Consensus 229 ~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~~~ 289 (290)
T TIGR00776 229 LFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILGIG 289 (290)
T ss_pred HHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHhcc
Confidence 88999 99999999999999999999999999999999999 9999999999887543
No 21
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=99.79 E-value=5.5e-19 Score=155.31 Aligned_cols=258 Identities=16% Similarity=0.267 Sum_probs=209.5
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHh---hhh--hhHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHhhhhhHHHH
Q 019344 47 GVDAPVTQSAFAYFSLALVYGGVLLYR---RQR--LRVAWYWYLLLGFVDVQGNFLVNKAYQFSSITSVTLLDCCTIAWA 121 (342)
Q Consensus 47 ~~~~p~~~~~~r~~~~~~~~~~~~~~~---~~~--~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~ii~~~~pi~~ 121 (342)
+...|.+++..+...+.+..+.....+ +++ .+..++..+.+|+...++.++.+.|+.+.+++.++.+..++|+++
T Consensus 44 ~f~~p~~lt~~~~~~~~l~~~v~~~l~~~~~~~~~~~~~~~~llpl~~~~~~~~v~~n~Sl~~v~VsF~q~iKa~~P~~t 123 (316)
T KOG1441|consen 44 GFPFPITLTMLHLFCGALALLVIKVLKLVPPSKISSKLPLRTLLPLGLVFCISHVLGNVSLSYVPVSFYQTIKALMPPFT 123 (316)
T ss_pred CCCCccHHHHHHHHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHHHHHHHhcchhhhccchhHHHHHHhhcchhH
Confidence 455699999886666655444333222 122 246889999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcccchHHHHHHHHHHHhhhhhheecCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhc----cCChH
Q 019344 122 IVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDAGGDGGGGSRPLLGDVLVIAGTIFFATSNVGEEFFVK----KKDRV 197 (342)
Q Consensus 122 ~il~~l~l~e~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~~~~~~----~~~~~ 197 (342)
+++++++.+|+.++..+..+.....||.+....+. +.++.|...++++.+..+..+++.|+..+ +.|+.
T Consensus 124 vl~~~~~~~~~~s~~~~lsL~piv~GV~ias~~e~-------~fn~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~~~ 196 (316)
T KOG1441|consen 124 VLLSVLLLGKTYSSMTYLSLLPIVFGVAIASVTEL-------SFNLFGFISAMISNLAFALRNILSKKLLTSKGESLNSM 196 (316)
T ss_pred HHHHHHHhCCCCcceEEEEEEEeeeeEEEeeeccc-------cccHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCch
Confidence 99999999999999999999999999999999773 78899999999999999999999999884 26788
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhc-ccc---cccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhHhhhHHHHH
Q 019344 198 EVVCMIGVYGLLVSAVQLSILEL-KSL---ESVEWSTNILLGFAGYAASSFMFYTLAPFVLKLSGATMFNLSLLTADMWA 273 (342)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~pv~~ 273 (342)
+...++.-++..+.++|+..... ... ....|+.......... .+.+..+...+..+.+.+|...++.+...-++.
T Consensus 197 ~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-v~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~v 275 (316)
T KOG1441|consen 197 NLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVTFLILLLNS-VLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVV 275 (316)
T ss_pred HHHHHhhhHHHHHHhcchHhhhcccceeeeeccccchhhHHHHHHH-HHHHHHHHHHHHHHcccCchhhhhhccceEEEE
Confidence 88888877777777646544432 222 1113333333322223 477788888899999999999999999999999
Q ss_pred HHHHHHHhcccccHHHHHHHHHHHHHHHhhccCCCCCCC
Q 019344 274 VVFRICFYHQKVDWLYFLAFGIVVIGLIIYSTTEKDLNP 312 (342)
Q Consensus 274 ~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~~~~~ 312 (342)
++.++++|+|+.++.+..|+++.++|+++|++.+.++++
T Consensus 276 i~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~~k~~~~~ 314 (316)
T KOG1441|consen 276 IVVSWLIFGNPVTFLNALGYAIAILGVFLYSRAKLKEKK 314 (316)
T ss_pred EEeEeeeecCCCchhhHHHHHHHHHHHHHHHHHhhhhhc
Confidence 999999999999999999999999999999998766544
No 22
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=99.78 E-value=7.3e-15 Score=128.45 Aligned_cols=280 Identities=15% Similarity=0.145 Sum_probs=197.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHHHHHHHh-----hhhh----------hHHHHHHHHHH
Q 019344 26 GQLVSFTLALMSFTSSLIADLG--VDAPVTQSAFAYFSLALVYGGVLLYR-----RQRL----------RVAWYWYLLLG 88 (342)
Q Consensus 26 ~~~~al~~~~~~~~~~~~~~~~--~~~p~~~~~~r~~~~~~~~~~~~~~~-----~~~~----------~~~~~~~~~~g 88 (342)
..+.....++.....+.....+ ...|...++.--.+-.+++...++++ ++.. +++..+..+.+
T Consensus 20 l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk~~vPa 99 (345)
T KOG2234|consen 20 LIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLKVSVPA 99 (345)
T ss_pred HHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHHHHHHH
Confidence 3334444555554554443332 23477777666666666655555433 1111 22456777788
Q ss_pred HHHHHHHHHHHHHhhccchhHHHHhhhhhHHHHHHHHHHHhcccchHHHHHHHHHHHhhhhhheecCCC--CC--CCCCC
Q 019344 89 FVDVQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDAG--GD--GGGGS 164 (342)
Q Consensus 89 ~~~~~~~~~~~~al~~~~~~~~~ii~~~~pi~~~il~~l~l~e~~~~~~~~g~~l~~~Gv~l~~~~~~~--~~--~~~~~ 164 (342)
++....|.+.|.++.+.+++..++..++..+.|++++++++++|++++||.++++.++|+.++-.+... +. .....
T Consensus 100 ~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~~~~~a~~~~~~~ 179 (345)
T KOG2234|consen 100 LIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPSLSPTGAKSESSAQ 179 (345)
T ss_pred HHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCccCCCccc
Confidence 888888779999999999999999999999999999999999999999999999999999999844321 11 23456
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhhccCC--hHHHHHHHHHHHHHHHHHHHHhhhcccccc--c--ccchhHHHHHHH
Q 019344 165 RPLLGDVLVIAGTIFFATSNVGEEFFVKKKD--RVEVVCMIGVYGLLVSAVQLSILELKSLES--V--EWSTNILLGFAG 238 (342)
Q Consensus 165 ~~~~G~~l~l~aa~~~a~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~ 238 (342)
+...|....+.++...++..++.+|..|+.+ ...-+...+++|.++.++.....+...... + .|++..+...+.
T Consensus 180 n~~~G~~avl~~c~~SgfAgvYfEkiLK~s~~s~wi~NiqL~~~g~~f~~l~~~~~d~~~i~~~gff~G~s~~vw~vVl~ 259 (345)
T KOG2234|consen 180 NPFLGLVAVLVACFLSGFAGVYFEKILKGSNVSLWIRNIQLYFFGILFNLLTILLQDGEAINEYGFFYGYSSIVWLVVLL 259 (345)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhhccccccccCCccccccHHHHHHHHH
Confidence 7799999999999999999999999997743 333445556888888875555555433321 1 122222222222
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHhHhhhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHhhccCCCC
Q 019344 239 YAASSFMFYTLAPFVLKLSGATMFNLSLLTADMWAVVFRICFYHQKVDWLYFLAFGIVVIGLIIYSTTEKD 309 (342)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~pv~~~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~~ 309 (342)
...++ .+....+++.+...=.....+..+++.+.++.+++.+||....+|..+++.++.+|...+.+
T Consensus 260 ---~a~gG-Llvs~v~KyADnIlK~f~~s~aiilt~v~S~~Lf~~~~t~~F~lG~~lVi~Si~lY~~~P~~ 326 (345)
T KOG2234|consen 260 ---NAVGG-LLVSLVMKYADNILKGFSTSVAIILTTVASIALFDFQLTLYFLLGALLVILSIFLYSLYPAR 326 (345)
T ss_pred ---Hhccc-hhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhhcCCcc
Confidence 22222 44455666666666666666677999999999999999999999999999999999955443
No 23
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.74 E-value=1.5e-15 Score=129.23 Aligned_cols=260 Identities=17% Similarity=0.225 Sum_probs=208.6
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHhhh--hhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHhhhhhHHHHHHHH
Q 019344 48 VDAPVTQSAFAYFSLALVYGGVLLYRRQ--RLRVAWYWYLLLGFVDVQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVLT 125 (342)
Q Consensus 48 ~~~p~~~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~ii~~~~pi~~~il~ 125 (342)
..+|.++.+.+++.+.++-..++..+++ ..+.+|+.+...++.+.....+.|.|++|++-....+-.++..+-+++++
T Consensus 48 F~~~~fL~~~q~l~~~~~s~~~l~~~k~~~~~~apl~~y~~is~tn~~s~~~~yeaLKyvSyPtq~LaKscKmIPVmlmg 127 (327)
T KOG1581|consen 48 FEHSLFLVFCQRLVALLVSYAMLKWWKKELSGVAPLYKYSLISFTNTLSSWCGYEALKYVSYPTQTLAKSCKMIPVMLMG 127 (327)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhcccccCCCCCchhHHhHHHHHhhcchHHHHHHHHhccchHHHHHHHhhhhHHHHHH
Confidence 3568899999999887776555433222 23779999999999999999999999999999999999999999999999
Q ss_pred HHHhcccchHHHHHHHHHHHhhhhhheecCCCC--CCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcc--CChHHHHH
Q 019344 126 WLFLGTRYSLWQLLGAALCVLGLGLVLLSDAGG--DGGGGSRPLLGDVLVIAGTIFFATSNVGEEFFVKK--KDRVEVVC 201 (342)
Q Consensus 126 ~l~l~e~~~~~~~~g~~l~~~Gv~l~~~~~~~~--~~~~~~~~~~G~~l~l~aa~~~a~~~v~~~~~~~~--~~~~~~~~ 201 (342)
.+++|+|.+..+++...+..+|+.+....+.++ .+....+..+|+.+....-++-++.+..++++.++ .++..++.
T Consensus 128 ~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~s~~~~g~~ns~~G~~Ll~~~L~fDgfTn~tQd~lf~~~k~s~~~mM~ 207 (327)
T KOG1581|consen 128 TLVYGRKYSSFEYLVAFLISLGVSIFSLFPNSDSSSKSGRENSPIGILLLFGYLLFDGFTNATQDSLFKKYKVSSLHMMF 207 (327)
T ss_pred HHHhcCccCcHHHHHHHHHHhheeeEEEecCCCCccccCCCCchHhHHHHHHHHHHHhhHHhHHHHHhccCCccHhHHHH
Confidence 999999999999999999999999988875422 22344577999999999999999999999999886 56788888
Q ss_pred HHHHHHHHHHHHHHHhhhcccccccc-----cchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhHhhhHHHHHHHH
Q 019344 202 MIGVYGLLVSAVQLSILELKSLESVE-----WSTNILLGFAGYAASSFMFYTLAPFVLKLSGATMFNLSLLTADMWAVVF 276 (342)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~pv~~~~~ 276 (342)
+..+++.+...... +..+...++.+ ......++... .++..++.+.+.-+++.|+.+...++.++.++++.+
T Consensus 208 ~vNLf~~i~~~~~l-i~qg~~~~av~F~~~hp~~~~Di~l~s--~~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~l 284 (327)
T KOG1581|consen 208 GVNLFSAILNGTYL-ILQGHLLPAVSFIKEHPDVAFDILLYS--TCGAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIML 284 (327)
T ss_pred HHHHHHHHHHHHhh-hcCCCCchHHHHHHcChhHHHHHHHHH--HhhhhhhheehhhHhhcccHHHHHHHHHHHHHHHHH
Confidence 88888888875432 22222112211 11122233322 355666788888899999999999999999999999
Q ss_pred HHHHhcccccHHHHHHHHHHHHHHHhhccCCCCC
Q 019344 277 RICFYHQKVDWLYFLAFGIVVIGLIIYSTTEKDL 310 (342)
Q Consensus 277 ~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~~~ 310 (342)
+.+.+|++.++.|+.|..++..|+.+-..-++|+
T Consensus 285 S~i~f~h~~s~~q~~g~~iVFg~i~l~~~~k~~~ 318 (327)
T KOG1581|consen 285 SCIVFGHPLSSEQWLGVLIVFGGIFLEILLKKKK 318 (327)
T ss_pred HHHHhCCccchhhccCeeeehHHHHHHHHHHHhc
Confidence 9999999999999999999999998877766553
No 24
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=99.73 E-value=3.4e-15 Score=128.64 Aligned_cols=218 Identities=17% Similarity=0.180 Sum_probs=166.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHhhhhhHHHHHHHHHHHhcccchHHHHHHHHHHHhhhhhheecCCC
Q 019344 78 RVAWYWYLLLGFVDVQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDAG 157 (342)
Q Consensus 78 ~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~ii~~~~pi~~~il~~l~l~e~~~~~~~~g~~l~~~Gv~l~~~~~~~ 157 (342)
+++..++.+.+++....+.+.+.++++.+++..+++.++..++|++++++++|+|++++||+++.+.++|+.++..++..
T Consensus 14 ~~~~~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~ 93 (244)
T PF04142_consen 14 PKDTLKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQ 93 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCcc
Confidence 45677889999999999999999999999999999999999999999999999999999999999999999998876642
Q ss_pred CC---CC-------CCCcchHHHHHHHHHHHHHHHHHHHHHHhhccCC--hHHHHHHHHHHHHHHHHHHHHhhhcccccc
Q 019344 158 GD---GG-------GGSRPLLGDVLVIAGTIFFATSNVGEEFFVKKKD--RVEVVCMIGVYGLLVSAVQLSILELKSLES 225 (342)
Q Consensus 158 ~~---~~-------~~~~~~~G~~l~l~aa~~~a~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (342)
.. ++ ...+...|.++.+.++++.++..++.+|..|+.+ ...-+...+.++.++.++.....++....+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~~~~~~~~~~~~~~~ 173 (244)
T PF04142_consen 94 SSDNSSSSSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFNLLALLLSDGSAISE 173 (244)
T ss_pred ccccccccccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhccccccccc
Confidence 21 11 1234579999999999999999999999999853 344455556788887765544444332221
Q ss_pred cc-cchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhHhhhHHHHHHHHHHHHhcccccHHHHHHHHHH
Q 019344 226 VE-WSTNILLGFAGYAASSFMFYTLAPFVLKLSGATMFNLSLLTADMWAVVFRICFYHQKVDWLYFLAFGIV 296 (342)
Q Consensus 226 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~pv~~~~~~~~~~~e~~~~~~~~G~~li 296 (342)
.. +.+.-...+..+.....++ ......+++.+...=+.......+++.+.++++|+.+++....+|..++
T Consensus 174 ~g~f~G~~~~~~~~i~~~a~gG-llva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~~~V 244 (244)
T PF04142_consen 174 SGFFHGYSWWVWIVIFLQAIGG-LLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLLGAALV 244 (244)
T ss_pred CCchhhcchHHHHHHHHHHHhh-HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhheecC
Confidence 11 1111111222222122222 5566678888888888888888899999999999999999999998753
No 25
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=99.67 E-value=2.5e-14 Score=121.65 Aligned_cols=268 Identities=10% Similarity=0.127 Sum_probs=189.5
Q ss_pred HHHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHHHHHHHHHH-Hhhhhh--------hHHHHHHHHHHHHHHHHHHHH
Q 019344 31 FTLALMSFTSSLIADL---GVDAPVTQSAFAYFSLALVYGGVLL-YRRQRL--------RVAWYWYLLLGFVDVQGNFLV 98 (342)
Q Consensus 31 l~~~~~~~~~~~~~~~---~~~~p~~~~~~r~~~~~~~~~~~~~-~~~~~~--------~~~~~~~~~~g~~~~~~~~~~ 98 (342)
+.+-..+.+.++..++ ...-|.+++.++.++-.++.....+ ++++.. +...++....|+.......+.
T Consensus 22 l~yY~~Si~Ltf~~~~~~~~f~fPLf~ts~h~~v~flfa~~~~~l~~~~~~r~r~~~sw~~~Lr~~aPtalata~DIGLS 101 (349)
T KOG1443|consen 22 LLYYFLSIGLTFYFKWLTKNFHFPLFVTSLHLAVKFLFAALSRRLYQCSVPRARVVLSWRDYLRRLAPTALATALDIGLS 101 (349)
T ss_pred HHHHHHHHHHHHHhhhhhcCcCCchHHHHHHHHHHHHHHHHHHHHHhccCCccccCCcHHHHHHHhhhhhhhhhcccccc
Confidence 3344444444555543 3445999998887766554433222 221111 335566779999988889999
Q ss_pred HHHhhccchhHHHHhhhhhHHHHHHHHHHHhcccchHHHHHHHHHHHhhhhhheecCCCCCCCCCCcchHHHHHHHHHHH
Q 019344 99 NKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDAGGDGGGGSRPLLGDVLVIAGTI 178 (342)
Q Consensus 99 ~~al~~~~~~~~~ii~~~~pi~~~il~~l~l~e~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~~~~~~~G~~l~l~aa~ 178 (342)
+++++|++.+..++..+.+++|+.+++.+|.-||.++.-..-++++.+|+.+.++.+. +.+..|..+..++.+
T Consensus 102 N~sl~yVtlSlYTM~KSSsi~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~KsT-------qf~i~Gf~lv~~aS~ 174 (349)
T KOG1443|consen 102 NWSLEYVTLSLYTMTKSSSILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYKST-------QFNIEGFFLVLAASL 174 (349)
T ss_pred cceeeeeeeeeeeeccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEeccc-------ceeehhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999874 678899999999999
Q ss_pred HHHHHHHHHHHhhcc-----CChHHHHHHHHHHHHHHHHHHHHhhhcccccc-------cccch--hHHHHHHHHHHHHH
Q 019344 179 FFATSNVGEEFFVKK-----KDRVEVVCMIGVYGLLVSAVQLSILELKSLES-------VEWST--NILLGFAGYAASSF 244 (342)
Q Consensus 179 ~~a~~~v~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~--~~~~~~~~~~~~~~ 244 (342)
+.++-..+.+...++ .+|........-+..+..++....+|+..... .+... +....+...+...+
T Consensus 175 ~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~~s~~f~~~d~~~~~rv~g~i~l~g~laF 254 (349)
T KOG1443|consen 175 LSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLFEGLHLITSSSIFRFQDTGLILRVIGLISLGGLLAF 254 (349)
T ss_pred hhhhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHHHHHHHHHHcccccchhhhHHHhcCccHHHHHHHHHHHHHHHHH
Confidence 999888888887766 34666665555444444444455666533221 11111 11111111111222
Q ss_pred HHHHHHHHHHhhhhhHHHHhHhhhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHhhcc
Q 019344 245 MFYTLAPFVLKLSGATMFNLSLLTADMWAVVFRICFYHQKVDWLYFLAFGIVVIGLIIYST 305 (342)
Q Consensus 245 ~~~~~~~~~~~~~~a~~~~~~~~~~pv~~~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~ 305 (342)
+--..=.....+++....++.....-+...+++.++.+|.++...+.|..+...|+.++..
T Consensus 255 ~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~~~ 315 (349)
T KOG1443|consen 255 LLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLHRN 315 (349)
T ss_pred HHHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHhcc
Confidence 2212223355667778888888888899999999999999999999999999999999944
No 26
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=99.66 E-value=6.5e-14 Score=117.60 Aligned_cols=259 Identities=23% Similarity=0.282 Sum_probs=190.1
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHhhhh------------h-----hHHHHHHHHHHHHHHHHHHHHHHHhhccchhHH
Q 019344 48 VDAPVTQSAFAYFSLALVYGGVLLYRRQR------------L-----RVAWYWYLLLGFVDVQGNFLVNKAYQFSSITSV 110 (342)
Q Consensus 48 ~~~p~~~~~~r~~~~~~~~~~~~~~~~~~------------~-----~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~ 110 (342)
..+|+..+...++.-+.+++.+.+.|++. . +-+...++.-+++-..+..+.|.++.+++++..
T Consensus 36 fqhpvlqal~mFlGEflCl~vf~lir~~sn~~g~~s~~~~ilsq~~~pf~p~lfl~Pal~Di~gsslm~vgL~lTsASsf 115 (372)
T KOG3912|consen 36 FQHPVLQALLMFLGEFLCLAVFKLIRLRSNGQGVSSDLDSILSQDSSPFNPVLFLPPALCDIAGSSLMYVGLNLTSASSF 115 (372)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccccccccCCCCcceecChHHHHHhhhHHHHHHHHHhhHHHH
Confidence 56699988877777777776666543321 0 112345566888999999999999999999999
Q ss_pred HHhhhhhHHHHHHHHHHHhcccchHHHHHHHHHHHhhhhhheecCCC---CCCCCCCcchHHHHHHHHHHHHHHHHHHHH
Q 019344 111 TLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDAG---GDGGGGSRPLLGDVLVIAGTIFFATSNVGE 187 (342)
Q Consensus 111 ~ii~~~~pi~~~il~~l~l~e~~~~~~~~g~~l~~~Gv~l~~~~~~~---~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~ 187 (342)
+++.....+|+.+++.-+++++++.+||+|+....+|++.+...|.. +.-.+.+....|+++.++|-+.-|...++.
T Consensus 116 QMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~d~~~~~~p~~d~s~iitGdllIiiaqiivaiQ~v~E 195 (372)
T KOG3912|consen 116 QMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSLDVHLVTDPYTDYSSIITGDLLIIIAQIIVAIQMVCE 195 (372)
T ss_pred HHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeeeecccccCCccccccchhhhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999887641 122233566899999999999999999999
Q ss_pred HHhhcc--CChHHHHHHHHHHHHHHHHHHHHhhh----cccc---ccc---ccc---------hhHHHHHHHHHHHHHHH
Q 019344 188 EFFVKK--KDRVEVVCMIGVYGLLVSAVQLSILE----LKSL---ESV---EWS---------TNILLGFAGYAASSFMF 246 (342)
Q Consensus 188 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~---~~~---~~~---------~~~~~~~~~~~~~~~~~ 246 (342)
+|..++ .+|.....+.+.+|.++..+...... +..+ +.- +|. ....+...+...+-..+
T Consensus 196 ek~l~~~nV~pl~avg~eGlfG~v~~slL~i~m~yi~~~~sfS~~~~g~~eD~~~~~~~~~e~p~l~val~~~~vSiAff 275 (372)
T KOG3912|consen 196 EKQLKKSNVAPLQAVGWEGLFGLVILSLLAIPMYYIPSGDSFSCNPRGVLEDWGDAFAALQESPSLAVALIGFTVSIAFF 275 (372)
T ss_pred HhhhhhccCCHHHHhhhhhhHHHHHHHHHHHHHhheecCCcCcCCCCcchhhHHHHHHHhcCCchhHHHHhhhhhheeee
Confidence 998877 67888899999888665433222221 1000 000 111 11222333333222222
Q ss_pred HHHHHHHHhhhhhHHHHhHhhhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHhhccC
Q 019344 247 YTLAPFVLKLSGATMFNLSLLTADMWAVVFRICFYHQKVDWLYFLAFGIVVIGLIIYSTT 306 (342)
Q Consensus 247 ~~~~~~~~~~~~a~~~~~~~~~~pv~~~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~ 306 (342)
+..-....+..+++.-.+...++..+-.+++.....|.+...|+.|..+.+.|+.+|+--
T Consensus 276 NfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~f~llqilGFliLi~Gi~lY~~i 335 (372)
T KOG3912|consen 276 NFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEYFHLLQILGFLILIMGIILYNQI 335 (372)
T ss_pred eehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222233455567777777888888999999999999999999999999999999999843
No 27
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.64 E-value=1.7e-14 Score=118.11 Aligned_cols=233 Identities=12% Similarity=0.110 Sum_probs=180.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHhhhhhHHHHHHHHHHHhcccchHHHHHHHHHHHhhhhhheecCCC
Q 019344 78 RVAWYWYLLLGFVDVQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDAG 157 (342)
Q Consensus 78 ~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~ii~~~~pi~~~il~~l~l~e~~~~~~~~g~~l~~~Gv~l~~~~~~~ 157 (342)
+.+-+.+..++......++..+.|++|.|-....+-.++.|+-+.++++++.+++.+|+++..++++++||.+..+.+..
T Consensus 82 ~t~~~~YaAcs~sYLlAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~kY~cVL~IV~GValFmYK~~K 161 (337)
T KOG1580|consen 82 NTPTKMYAACSASYLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWRKYCCVLMIVVGVALFMYKENK 161 (337)
T ss_pred CCcchHHHHHHHHHHHHHHhccchhcccCCcHHHhcccCCCcceeeeehhhhcccccHHHHHHHHHHHHHHHHhhccccc
Confidence 44567788888887777999999999999999999999999999999999999999999999999999999999998653
Q ss_pred CCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhccC--ChHHHHHHHHHHHHHHHHHHHHhh-hccccccccc-chhHH
Q 019344 158 GDGGGGSRPLLGDVLVIAGTIFFATSNVGEEFFVKKK--DRVEVVCMIGVYGLLVSAVQLSIL-ELKSLESVEW-STNIL 233 (342)
Q Consensus 158 ~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~ 233 (342)
.+...+.....|.++.+.+-..-+.....+++..+.. ....++.+..+++.+.....+.+. +..++..+.. ....+
T Consensus 162 v~g~e~~t~g~GElLL~lSL~mDGlTg~~Qdrira~yq~~g~~MM~~~NlwStL~Lg~g~lfTGElweF~yF~~RhP~~~ 241 (337)
T KOG1580|consen 162 VGGAEDKTFGFGELLLILSLAMDGLTGSIQDRIRASYQRTGTSMMFYTNLWSTLYLGAGLLFTGELWEFFYFVQRHPYVF 241 (337)
T ss_pred cCCCcccccchHHHHHHHHHHhcccchhHHHHHHHhhccCchhhHHHHHHHHHHHhhhhheehhhHHHHHHHHHhccHHH
Confidence 3333456678999999999999999999988875542 335566667777777654333222 1111111110 01111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhHhhhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHhhccCCCCC
Q 019344 234 LGFAGYAASSFMFYTLAPFVLKLSGATMFNLSLLTADMWAVVFRICFYHQKVDWLYFLAFGIVVIGLIIYSTTEKDL 310 (342)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~pv~~~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~~~ 310 (342)
.-+..+.+++.+++++.+......++..-++...+...|+++.++++|+++++..||+|.+++..|...-....+|.
T Consensus 242 ~~l~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~D~~~GK~a 318 (337)
T KOG1580|consen 242 WDLTLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTADVVDGKKA 318 (337)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhHhhcCCcC
Confidence 12233444777788888999999999999999999999999999999999999999999999999988766554433
No 28
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.57 E-value=1.7e-12 Score=112.11 Aligned_cols=258 Identities=15% Similarity=0.091 Sum_probs=189.5
Q ss_pred CCchHHHHH--HHHHHHHHHHHHHHHHh---hhhh-hHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHhhhhhHHHH
Q 019344 48 VDAPVTQSA--FAYFSLALVYGGVLLYR---RQRL-RVAWYWYLLLGFVDVQGNFLVNKAYQFSSITSVTLLDCCTIAWA 121 (342)
Q Consensus 48 ~~~p~~~~~--~r~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~ii~~~~pi~~ 121 (342)
...|..+.. .+.+...+.+...-+-+ -+++ ++..++.+...++..+..+....+++|.++...+++.+.+|+++
T Consensus 38 y~f~~~l~l~~~Q~l~s~~~v~~lk~~~lv~~~~l~~~~~kk~~P~~~lf~~~i~t~~~slk~lnVpm~tv~kn~tii~~ 117 (314)
T KOG1444|consen 38 YNFPMGLLLMLLQSLASVLVVLVLKRLGLVNFRPLDLRTAKKWFPVSLLFVGMLFTGSKSLKYLNVPMFTVFKNLTIILT 117 (314)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHhceeecCCcChHHHHHHccHHHHHHHHHHHccccccccCchHHHHHhhchHHHH
Confidence 344555444 77776655444332211 1222 56678889999999999999999999999999999999999999
Q ss_pred HHHHHHHhcccchHHHHHHHHHHHhhhhhheecCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhccC--ChHHH
Q 019344 122 IVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDAGGDGGGGSRPLLGDVLVIAGTIFFATSNVGEEFFVKKK--DRVEV 199 (342)
Q Consensus 122 ~il~~l~l~e~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~~~~~~~~--~~~~~ 199 (342)
++....++|.|++...+.++..+++|.......+. ..+..|..|++...++.+.+.+..|+..+.. +....
T Consensus 118 ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~~~d~-------sf~~~gY~w~~~n~~~~a~~~v~~kk~vd~~~l~~~~l 190 (314)
T KOG1444|consen 118 AIGEVLFFGKRPSNKVWASVFAMIIGSVAAAFTDL-------SFNLRGYSWALANCLTTAAFVVYVKKSVDSANLNKFGL 190 (314)
T ss_pred HHhHHhhcCcCchhhHHHHHHHHHHHHHhhccccc-------eecchhHHHHHHHHHHHHHHHHHHHHhhccccccceeE
Confidence 99999999999999999999999999999888874 4556699999999999999999999987664 34555
Q ss_pred HHHHHHHHHHHHHHHHHhhhccc---ccccccch-hHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhHhhhHHHHHHH
Q 019344 200 VCMIGVYGLLVSAVQLSILELKS---LESVEWST-NILLGFAGYAASSFMFYTLAPFVLKLSGATMFNLSLLTADMWAVV 275 (342)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~pv~~~~ 275 (342)
..+-.+.......+..++.++.+ .+...|.. .........++.+++......+..+..++...++........+.+
T Consensus 191 v~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~~~~~~~~~~~lScv~gf~isy~s~~ct~~~SAtT~tivG~~n~l~t~l 270 (314)
T KOG1444|consen 191 VFYNNLLSLPPLLILSFITGELDALSLNFDNWSDSSVLVVMLLSCVMGFGISYTSFLCTRVNSATTTTIVGAKNKLLTYL 270 (314)
T ss_pred EeehhHHHHHHHHHHHHHhcchHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhccccceeehhhhhhHHHHH
Confidence 56666666666544444444321 11111221 112222222335555556666788888999888888777677777
Q ss_pred HHHHHhcccccHHHHHHHHHHHHHHHhhccCCCCCCC
Q 019344 276 FRICFYHQKVDWLYFLAFGIVVIGLIIYSTTEKDLNP 312 (342)
Q Consensus 276 ~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~~~~~ 312 (342)
-..++.+++.++...+|..+-+.|-++|++.+.++++
T Consensus 271 ~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~~~~~~k~ 307 (314)
T KOG1444|consen 271 GGLLFGDKPFTFLNVIGLLVGFFGGVLYSYATFRKKK 307 (314)
T ss_pred HHHhcCCceechhhhHHHHHHhhhhhHHhhhhhhhcc
Confidence 7777778899999999999999999999998755443
No 29
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.54 E-value=6.3e-13 Score=111.22 Aligned_cols=256 Identities=14% Similarity=0.176 Sum_probs=198.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHH-HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHhhhhhHHHHHHHHHHHh
Q 019344 51 PVTQSAFAYFSLALVYGGVLL-YRRQRLRVAWYWYLLLGFVDVQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFL 129 (342)
Q Consensus 51 p~~~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~ii~~~~pi~~~il~~l~l 129 (342)
-|.+++.++.+-..+.+..+. .+.++...+|+.+..++.+....+-+.+.++.|.+-....++.++.-+-+.+.+.++-
T Consensus 75 GWylTlvQf~~Ysg~glie~~~~~~k~r~iP~rtY~~la~~t~gtmGLsn~SlgYLNYPtQviFKccKliPVmiggifIq 154 (367)
T KOG1582|consen 75 GWYLTLVQFLVYSGFGLIELQLIQTKRRVIPWRTYVILAFLTVGTMGLSNGSLGYLNYPTQVIFKCCKLIPVMIGGIFIQ 154 (367)
T ss_pred chHHHHHHHHHHHhhhheEEEeecccceecchhHhhhhHhhhhhccccCcCccccccCcHHHHHHhhhhhhhhheeeeec
Confidence 578888888776544433332 2334445689999999999998899999999999998888999999999999999999
Q ss_pred cccchHHHHHHHHHHHhhhhhheecCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcc--CChHHHHHHHHHHH
Q 019344 130 GTRYSLWQLLGAALCVLGLGLVLLSDAGGDGGGGSRPLLGDVLVIAGTIFFATSNVGEEFFVKK--KDRVEVVCMIGVYG 207 (342)
Q Consensus 130 ~e~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~~~~~~~--~~~~~~~~~~~~~~ 207 (342)
++|..+.++.+..+..+|.++.+..|. ....+.+.+|+.+.-+|-++-|+-..++++..+. .+..++.++.+.+|
T Consensus 155 GkRY~v~d~~aA~lm~lGli~FTLADs---~~sPNF~~~Gv~mIsgALl~DA~iGNvQEk~m~~~~~ss~EmvfySy~iG 231 (367)
T KOG1582|consen 155 GKRYGVHDYIAAMLMSLGLIWFTLADS---QTSPNFNLIGVMMISGALLADAVIGNVQEKAMKMNPASSSEMVFYSYGIG 231 (367)
T ss_pred cccccHHHHHHHHHHHHHHHhhhhccc---ccCCCcceeeHHHHHHHHHHHHHhhHHHHHHHhhCCCCcceEEEeeeccc
Confidence 999999999999999999999999884 2344677899999999999999999999998876 44566777788888
Q ss_pred HHHHHHHHHhhhcccccccc----cchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhHhhhHHHHHHHHHHHHhcc
Q 019344 208 LLVSAVQLSILELKSLESVE----WSTNILLGFAGYAASSFMFYTLAPFVLKLSGATMFNLSLLTADMWAVVFRICFYHQ 283 (342)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~pv~~~~~~~~~~~e 283 (342)
.++.+.+..+.+. -++.++ .+.......+.....++.+.......++..++..+......+.-.++++++++|..
T Consensus 232 ~vflf~~mvlTge-~f~a~~fcaehp~~tyGy~~~~s~~gylG~~~VLalI~~fGA~~aatvTTaRKavTi~lSfllFsK 310 (367)
T KOG1582|consen 232 FVFLFAPMVLTGE-LFSAWTFCAEHPVRTYGYAFLFSLAGYLGIVFVLALIKLFGALIAATVTTARKAVTILLSFLLFSK 310 (367)
T ss_pred HHHHHHHHHhccc-chhhhHHHHhCcHhHHHHHHHHHHHhHhhHHHHHHHHHHhchhHHHHHHHhHhHHHHHHHHHHHcC
Confidence 8887666554432 112111 11111222222222455555555667788899999988889999999999999999
Q ss_pred cccHHHHHHHHHHHHHHHhhccCCCCC
Q 019344 284 KVDWLYFLAFGIVVIGLIIYSTTEKDL 310 (342)
Q Consensus 284 ~~~~~~~~G~~li~~g~~l~~~~~~~~ 310 (342)
++|.....|..+++.|+++-.+.++.+
T Consensus 311 PfT~qy~~~gllv~lgI~Ln~ysk~nk 337 (367)
T KOG1582|consen 311 PFTEQYVWSGLLVVLGIYLNMYSKRNK 337 (367)
T ss_pred chHHHHhhhhHHHHHHHHhhcccCCCC
Confidence 999999999999999999988877443
No 30
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=99.52 E-value=4.6e-13 Score=108.92 Aligned_cols=265 Identities=13% Similarity=0.084 Sum_probs=199.3
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHhhhhh-hHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHhhhhhHHHHHHHH
Q 019344 47 GVDAPVTQSAFAYFSLALVYGGVLLYRRQRL-RVAWYWYLLLGFVDVQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVLT 125 (342)
Q Consensus 47 ~~~~p~~~~~~r~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~ii~~~~pi~~~il~ 125 (342)
+.+-.+.+.+.+.+...+.+...-+.+-.+. .++.++.+..+++.....+..-.+++|.++...+++.+++.+..+...
T Consensus 33 gfnMnflll~vQSlvcvv~l~iLk~l~~~~fR~t~aK~WfpiSfLLv~MIyt~SKsLqyL~vpiYTiFKNltII~iAygE 112 (309)
T COG5070 33 GFNMNFLLLAVQSLVCVVGLLILKFLRLVEFRLTKAKKWFPISFLLVVMIYTSSKSLQYLAVPIYTIFKNLTIILIAYGE 112 (309)
T ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHhHhheehhhhhhhcCHHHHHHHHHHhcccceeeeeeeHHHHhccceeehhHhhH
Confidence 4455677777777766554443332222222 456677788899999888899999999999999999999999999999
Q ss_pred HHHhcccchHHHHHHHHHHHhhhhhheecCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhccCCh--HHHHHHH
Q 019344 126 WLFLGTRYSLWQLLGAALCVLGLGLVLLSDAGGDGGGGSRPLLGDVLVIAGTIFFATSNVGEEFFVKKKDR--VEVVCMI 203 (342)
Q Consensus 126 ~l~l~e~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~~~~~~~~~~--~~~~~~~ 203 (342)
.+++|.|.+..+....+++++.-+...++|.+..+-..+....|.+|+...++..|.+....|+..+-.+. .+.++|.
T Consensus 113 vl~Fgg~vtsl~l~SFilMvlSS~va~w~D~q~~~~~~~~lN~GY~Wm~~NclssaafVL~mrkri~ltNf~d~dtmfYn 192 (309)
T COG5070 113 VLFFGGRVTSLELLSFILMVLSSVVATWGDQQASAFKAQILNPGYLWMFTNCLSSAAFVLIMRKRIKLTNFKDFDTMFYN 192 (309)
T ss_pred HHHhcCccchhhHHHHHHHHHHHHHhccchhhHHHHHhcccCCceEEEehhhHhHHHHHHHHHHhhcccccchhhHHHHh
Confidence 99999999999999999999999999988852222233466789999999999999999999998766443 4455666
Q ss_pred HHHHHHHHHHHHHhhhcccccccccchh--HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhHhhhHHHHHHHHHHHHh
Q 019344 204 GVYGLLVSAVQLSILELKSLESVEWSTN--ILLGFAGYAASSFMFYTLAPFVLKLSGATMFNLSLLTADMWAVVFRICFY 281 (342)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~pv~~~~~~~~~~ 281 (342)
.+.+..+.+...+++|+........+.. ........+.++++.-.+-.|..+..+++..++...++..-..+-|.++|
T Consensus 193 NllslPiL~~~s~~~edws~~n~annl~~d~l~am~ISgl~svgiSy~saWcvrVtSSTtySMvGALNKlp~alaGlvff 272 (309)
T COG5070 193 NLLSLPILLSFSFLFEDWSPGNLANNLSVDSLMAMFISGLCSVGISYCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFF 272 (309)
T ss_pred hhHHHHHHHHHHHHhccCCcchhhcCCChHHHHHHHHHHHHHhhhhhccceeEeehhhhHHHHHHHhhhChHHHhhhhhc
Confidence 6777777665566666544432221111 11111122225555556677889999999999999999999999999999
Q ss_pred cccccHHHHHHHHHHHHHHHhhccCCCCCC
Q 019344 282 HQKVDWLYFLAFGIVVIGLIIYSTTEKDLN 311 (342)
Q Consensus 282 ~e~~~~~~~~G~~li~~g~~l~~~~~~~~~ 311 (342)
+|+.+...+....+=..+..+|..++++++
T Consensus 273 dap~nf~si~sillGflsg~iYavaks~k~ 302 (309)
T COG5070 273 DAPVNFLSIFSILLGFLSGAIYAVAKSKKQ 302 (309)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998888888888765544
No 31
>COG2510 Predicted membrane protein [Function unknown]
Probab=99.42 E-value=3e-12 Score=95.08 Aligned_cols=128 Identities=23% Similarity=0.272 Sum_probs=101.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHhhh--h----hhHHHHHHHHHHHHHHHHHHH
Q 019344 24 FLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYRRQ--R----LRVAWYWYLLLGFVDVQGNFL 97 (342)
Q Consensus 24 ~~~~~~al~~~~~~~~~~~~~~~~~~~p~~~~~~r~~~~~~~~~~~~~~~~~--~----~~~~~~~~~~~g~~~~~~~~~ 97 (342)
+.+.+.|++.+......+.-. ...+|.+.++.|.....++++.++...++ . -++.|..+.+.|+.+..+..+
T Consensus 6 ~~ALLsA~fa~L~~iF~KIGl--~~vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k~~lflilSGla~glswl~ 83 (140)
T COG2510 6 IYALLSALFAGLTPIFAKIGL--EGVDPDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPKSWLFLILSGLAGGLSWLL 83 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHHHHHHHHhcCceecccccCcceehhhhHHHHHHHHHHHH
Confidence 445445554443332222211 34678999999999888777777664332 1 267888899999999999999
Q ss_pred HHHHhhccchhHHHHhhhhhHHHHHHHHHHHhcccchHHHHHHHHHHHhhhhhhee
Q 019344 98 VNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLL 153 (342)
Q Consensus 98 ~~~al~~~~~~~~~ii~~~~pi~~~il~~l~l~e~~~~~~~~g~~l~~~Gv~l~~~ 153 (342)
||.|++..+++.+..+..++|+++++++++++|||++..+++|+.+..+|++++..
T Consensus 84 Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs~ 139 (140)
T COG2510 84 YFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVSL 139 (140)
T ss_pred HHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEec
Confidence 99999999999999999999999999999999999999999999999999998764
No 32
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=99.41 E-value=1.4e-10 Score=99.65 Aligned_cols=245 Identities=15% Similarity=0.128 Sum_probs=171.7
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHhhhhhh---HHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHhh-hhhHHHHHHH
Q 019344 49 DAPVTQSAFAYFSLALVYGGVLLYRRQRLR---VAWYWYLLLGFVDVQGNFLVNKAYQFSSITSVTLLD-CCTIAWAIVL 124 (342)
Q Consensus 49 ~~p~~~~~~r~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~ii~-~~~pi~~~il 124 (342)
.+|....+---..+.++-+.....+++... ..+..-++.|++...++...+.|+++.+++.+..+. .++-+.+.++
T Consensus 10 G~~~~Q~lG~t~Gali~alv~~~~~~p~~~~~~~~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~ 89 (269)
T PF06800_consen 10 GKPANQILGTTIGALIFALVVFLFRQPAFSMSGTSFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLI 89 (269)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHH
Confidence 345555544444444444444444454442 677888999999999999999999999999999886 7888889999
Q ss_pred HHHHhcccchHHH----HHHHHHHHhhhhhheecCCCCCCC-CCCcchHHHHHHHHHHHHHHHHHHHHHHhhccCChHHH
Q 019344 125 TWLFLGTRYSLWQ----LLGAALCVLGLGLVLLSDAGGDGG-GGSRPLLGDVLVIAGTIFFATSNVGEEFFVKKKDRVEV 199 (342)
Q Consensus 125 ~~l~l~e~~~~~~----~~g~~l~~~Gv~l~~~~~~~~~~~-~~~~~~~G~~l~l~aa~~~a~~~v~~~~~~~~~~~~~~ 199 (342)
+.++++|.-+..+ .+++++.++|+.+....+.++.+. ...+...|....+++.+.|..|.++.|. .+.++...
T Consensus 90 gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~~~~~~~~~~~~~~~~kgi~~Ll~stigy~~Y~~~~~~--~~~~~~~~ 167 (269)
T PF06800_consen 90 GVLFFGEWTTTTQKIIGFLALVLIIIGVILTSYQDKKSDKSSSKSNMKKGILALLISTIGYWIYSVIPKA--FHVSGWSA 167 (269)
T ss_pred HHhhcCCCCCcchHHHHHHHHHHHHHHHHHhccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHh--cCCChhHh
Confidence 9999999777555 458888899999999988633322 3456688999999999999999999886 46777777
Q ss_pred HHHHHHHHHHHHHHHHHhhhc-ccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhHhhhHHHHHHHHHH
Q 019344 200 VCMIGVYGLLVSAVQLSILEL-KSLESVEWSTNILLGFAGYAASSFMFYTLAPFVLKLSGATMFNLSLLTADMWAVVFRI 278 (342)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~pv~~~~~~~ 278 (342)
..-+ ..|.++..+.+..... ...+...|..... |. ....+..++..+.+..+....=....+.++++.+.+.
T Consensus 168 ~lPq-aiGm~i~a~i~~~~~~~~~~~k~~~~nil~----G~--~w~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI 240 (269)
T PF06800_consen 168 FLPQ-AIGMLIGAFIFNLFSKKPFFEKKSWKNILT----GL--IWGIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGI 240 (269)
T ss_pred HHHH-HHHHHHHHHHHhhcccccccccchHHhhHH----HH--HHHHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhh
Confidence 6666 4555544333333222 1222222322222 22 2222345555577787877777777788999999999
Q ss_pred HHhcccccHH----HHHHHHHHHHHHHh
Q 019344 279 CFYHQKVDWL----YFLAFGIVVIGLII 302 (342)
Q Consensus 279 ~~~~e~~~~~----~~~G~~li~~g~~l 302 (342)
+++||.=+.. .++|.++++.|.++
T Consensus 241 ~il~E~Kt~ke~~~~~~G~~Liv~G~il 268 (269)
T PF06800_consen 241 FILKEKKTKKEMIYTLIGLILIVIGAIL 268 (269)
T ss_pred eEEEecCchhhHHHHHHHHHHHHHhhhc
Confidence 9999987764 55788888887654
No 33
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=99.37 E-value=1.5e-11 Score=98.42 Aligned_cols=219 Identities=18% Similarity=0.307 Sum_probs=160.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccchhHHHHhhhhhHHHHHHHHHHHhcccchHHHHHHHHHHHhhhhhheecCCCCCC
Q 019344 81 WYWYLLLGFVDVQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDAGGDG 160 (342)
Q Consensus 81 ~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~ii~~~~pi~~~il~~l~l~e~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~ 160 (342)
.++.....++....++.+..|++..++++++.+..+...|+.+++++.+|+|+.-.++++.++++.|++++.+.|.
T Consensus 53 ~~~taPF~i~Wt~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN---- 128 (290)
T KOG4314|consen 53 FIRTAPFSIFWTGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADN---- 128 (290)
T ss_pred eeeecceEEEEecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccc----
Confidence 3444555666777799999999999999999999999999999999999999999999999999999999998763
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHH---HHHHHHHHHHHHhhhc---cc---ccccccchh
Q 019344 161 GGGSRPLLGDVLVIAGTIFFATSNVGEEFFVKKKDRVEVVCMIG---VYGLLVSAVQLSILEL---KS---LESVEWSTN 231 (342)
Q Consensus 161 ~~~~~~~~G~~l~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~---~~---~~~~~~~~~ 231 (342)
...+.+.|+.+++.++...|+|.+..|+.....+--+....+. ++...+...|..+... .+ +...+|..
T Consensus 129 -~~a~e~iGi~~AV~SA~~aAlYKV~FK~~iGnAn~Gdaa~FmS~LGF~NL~~~~~~~lIL~~T~VE~~qsFA~~PWG~- 206 (290)
T KOG4314|consen 129 -EHADEIIGIACAVGSAFMAALYKVLFKMFIGNANFGDAAHFMSCLGFFNLCFISFPALILAFTGVEHLQSFAAAPWGC- 206 (290)
T ss_pred -hhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHhhhHHHHHHhchHHHHHHhhCCchh-
Confidence 2367899999999999999999999999988865544443333 3333333223222221 22 22233322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhHhhhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHhhccCCCC
Q 019344 232 ILLGFAGYAASSFMFYTLAPFVLKLSGATMFNLSLLTADMWAVVFRICFYHQKVDWLYFLAFGIVVIGLIIYSTTEKD 309 (342)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~pv~~~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~~ 309 (342)
..|....+..+....+.++....+...++-+.....-....+.++-+-..+...+.|..+|.+|..+....++|
T Consensus 207 ----l~G~A~L~lAFN~~iN~GiaL~~PilISiG~l~~iP~NaaiDiL~q~l~~ntl~La~T~iI~i~FiLiiiP~d~ 280 (290)
T KOG4314|consen 207 ----LCGAAGLSLAFNFLINFGIALLNPILISIGMLCGIPGNAAIDILFQELEFNTLFLAATCIICIGFILIIIPEDK 280 (290)
T ss_pred ----hhhHHHHHHHHhhheeehhhhhchhhheehheecCcchhHHHHHHHHHHHHHHHHHHHHHHHHhHHheecccch
Confidence 12222234444566666777777777776666555667777877766678899999999999999988875543
No 34
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=99.33 E-value=1.7e-11 Score=94.97 Aligned_cols=125 Identities=18% Similarity=0.267 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 019344 178 IFFATSNVGEEFFVKKKDRVEVVCMIGVYGLLVSAVQLSILELKSLESVEWSTNILLGFAGYAASSFMFYTLAPFVLKLS 257 (342)
Q Consensus 178 ~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (342)
++||.+.+..|+..++.|+.....+.+..+.+ ..+.....+..+....++.......+.+.. +....+.++.+++++.
T Consensus 1 ~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~ 78 (126)
T PF00892_consen 1 FSWAIYSVFSKKLLKKISPLSITFWRFLIAGI-LLILLLILGRKPFKNLSPRQWLWLLFLGLL-GTALAYLLYFYALKYI 78 (126)
T ss_pred ceeeeHHHHHHHHhccCCHHHHHHHHHHHHHH-HHHHHHhhccccccCCChhhhhhhhHhhcc-ceehHHHHHHHHHHhc
Confidence 46899999999999999999999999877776 433333334333334444444555555555 5677789999999999
Q ss_pred hhHHHHhHhhhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHhhc
Q 019344 258 GATMFNLSLLTADMWAVVFRICFYHQKVDWLYFLAFGIVVIGLIIYS 304 (342)
Q Consensus 258 ~a~~~~~~~~~~pv~~~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~ 304 (342)
++...+....++|+++.++++++++|++++.+++|+++++.|+++..
T Consensus 79 ~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 79 SASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS 125 (126)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998764
No 35
>COG2510 Predicted membrane protein [Function unknown]
Probab=99.31 E-value=4.2e-11 Score=89.06 Aligned_cols=135 Identities=15% Similarity=0.123 Sum_probs=106.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhhhc-ccccccccchhHHHHHHHHHHHHHHHH
Q 019344 169 GDVLVIAGTIFFATSNVGEEFFVKKKDRVEVVCMIGVYGLLVSAVQLSILEL-KSLESVEWSTNILLGFAGYAASSFMFY 247 (342)
Q Consensus 169 G~~l~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (342)
...+++++|+++++..++.|--.++.||...+.........+........+. +...+.+...+..+.+-|. ++....
T Consensus 4 ~~~~ALLsA~fa~L~~iF~KIGl~~vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k~~lflilSGl--a~glsw 81 (140)
T COG2510 4 AIIYALLSALFAGLTPIFAKIGLEGVDPDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPKSWLFLILSGL--AGGLSW 81 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccCccHHHHHHHHHHHHHHHHHHHhcCceecccccCcceehhhhHHHH--HHHHHH
Confidence 4589999999999999999999999999888887776665555433333333 2332344444455555453 555566
Q ss_pred HHHHHHHhhhhhHHHHhHhhhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHhhcc
Q 019344 248 TLAPFVLKLSGATMFNLSLLTADMWAVVFRICFYHQKVDWLYFLAFGIVVIGLIIYST 305 (342)
Q Consensus 248 ~~~~~~~~~~~a~~~~~~~~~~pv~~~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~ 305 (342)
.+|+++++...+..+....-+.|++++++++++++|+++..+++|+.+|++|.++..+
T Consensus 82 l~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs~ 139 (140)
T COG2510 82 LLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVSL 139 (140)
T ss_pred HHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEec
Confidence 8899999999999888888899999999999999999999999999999999987654
No 36
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=99.27 E-value=2.4e-11 Score=102.25 Aligned_cols=270 Identities=13% Similarity=0.124 Sum_probs=178.8
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHH-HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhc-cchhHHHHhhh
Q 019344 38 FTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLL-YRRQRLRVAWYWYLLLGFVDVQGNFLVNKAYQF-SSITSVTLLDC 115 (342)
Q Consensus 38 ~~~~~~~~~~~~~p~~~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~al~~-~~~~~~~ii~~ 115 (342)
.....+.++...+--.+++.++++-+.--+++.- ....+++.+.+.+...-...+..+.+.++++++ ++...-.++.+
T Consensus 20 v~lE~L~~~~pgsgNLITFaqFlFia~eGlif~skf~~~k~kiplk~Y~i~V~mFF~vnv~NN~al~f~I~~PlHiIfRs 99 (330)
T KOG1583|consen 20 VFLELLVRNEPGSGNLITFAQFLFIATEGLIFTSKFFTVKPKIPLKDYAITVAMFFIVNVTNNYALKFNIPMPLHIIFRS 99 (330)
T ss_pred HHHHHHHHhCCCCeeehHHHHHHHHHHhceeeeccccccCCCCchhhhheehheeeeeeeeccceeeecccceEEEEEec
Confidence 3444555544344456676676665443333321 111123445566666666666679999999997 47777788899
Q ss_pred hhHHHHHHHHHHHhcccchHHHHHHHHHHHhhhhhheecCCCCCCC------------CCCcchHHHHHHHHHHHHHHHH
Q 019344 116 CTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDAGGDGG------------GGSRPLLGDVLVIAGTIFFATS 183 (342)
Q Consensus 116 ~~pi~~~il~~l~l~e~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~------------~~~~~~~G~~l~l~aa~~~a~~ 183 (342)
-+++.+++++++++|+|.+.+|+.++++..+|+++.+..+..+..+ .......|+.+...+-+..|.-
T Consensus 100 gsll~nM~~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~~~~~~~l~~~~~~~~~~~w~iGi~lL~~al~~sa~m 179 (330)
T KOG1583|consen 100 GSLLANMILGWILLGKRYSLRQYSSVLMITIGIIICTLFSSKDGRSKLSGLDSGSAQSDFFWWLIGIALLVFALLLSAYM 179 (330)
T ss_pred CcHHHHHHHHHHhccceeehhhhhhHHhhhhhheeEEeecCcchhhhhcccccCcccccchHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988755312111 1112368888888999999998
Q ss_pred HHHHHHhhcc--CChHHHHHHHHHHHHHHHHHHH--Hhhhc-----cc---ccccccc-hhHHHHHHHHHHHHHHHHHHH
Q 019344 184 NVGEEFFVKK--KDRVEVVCMIGVYGLLVSAVQL--SILEL-----KS---LESVEWS-TNILLGFAGYAASSFMFYTLA 250 (342)
Q Consensus 184 ~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~--~~~~~-----~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 250 (342)
.+.++..-++ .++.+.+++..+......+... ...++ .+ .+..... ...+..++..+...+.+.-..
T Consensus 180 giyqE~~Y~kyGKh~~EalFytH~LsLP~Flf~~~div~~~~~~~~se~~~~p~~g~~vP~~~~yLl~n~L~Qy~CikgV 259 (330)
T KOG1583|consen 180 GIYQETTYQKYGKHWKEALFYTHFLSLPLFLFMGDDIVSHWRLAFKSESYLIPLLGFKVPSMWVYLLFNVLTQYFCIKGV 259 (330)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHhccchHHHhcchHHHHHHHHhcCcceeccccCccccHHHHHHHHHHHHHHHHHHhh
Confidence 8888887766 5677788887765554432110 00000 00 1111111 111122222222333333333
Q ss_pred HHHHhhhhhHHHHhHhhhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHhhccCC
Q 019344 251 PFVLKLSGATMFNLSLLTADMWAVVFRICFYHQKVDWLYFLAFGIVVIGLIIYSTTE 307 (342)
Q Consensus 251 ~~~~~~~~a~~~~~~~~~~pv~~~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~ 307 (342)
+..-...++..+++...++..++.+++.+.|+.+++++.++|..++..|..++....
T Consensus 260 y~L~te~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~h~lGa~lVF~Gt~~fa~~~ 316 (330)
T KOG1583|consen 260 YILTTETSSLTVTLVLTLRKFVSLLFSIIYFENPFTPWHWLGAALVFFGTLLFANVW 316 (330)
T ss_pred hhhhceecceEEEEeeeHHHHHHHhheeeEecCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 444555667777788889999999999999999999999999999999999987543
No 37
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=99.27 E-value=1e-10 Score=89.04 Aligned_cols=100 Identities=28% Similarity=0.485 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHHHHHHhhh------hh-hHHHHHHHHHHHHHH-HHHHHHHHHhhccchhHHHHhhhhhHHHHHHHHHH
Q 019344 56 AFAYFSLALVYGGVLLYRRQ------RL-RVAWYWYLLLGFVDV-QGNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWL 127 (342)
Q Consensus 56 ~~r~~~~~~~~~~~~~~~~~------~~-~~~~~~~~~~g~~~~-~~~~~~~~al~~~~~~~~~ii~~~~pi~~~il~~l 127 (342)
.+|+..+.+++......+++ .. ++++.+....|+++. ..+.++++|+++.+ +.++++.+++|+++.+++.+
T Consensus 2 a~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~ 80 (113)
T PF13536_consen 2 AFRYLFSVLFLLIILLIRGRLRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWL 80 (113)
T ss_pred HHHHHHHHHHHHHHHHHHccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHH
Confidence 36777777666665543221 11 345667778788887 55999999999999 58889999999999999999
Q ss_pred HhcccchHHHHHHHHHHHhhhhhheecCC
Q 019344 128 FLGTRYSLWQLLGAALCVLGLGLVLLSDA 156 (342)
Q Consensus 128 ~l~e~~~~~~~~g~~l~~~Gv~l~~~~~~ 156 (342)
++|||+++++++++.++++|++++..++.
T Consensus 81 ~~~er~~~~~~~a~~l~~~Gv~li~~~~~ 109 (113)
T PF13536_consen 81 FFKERLSPRRWLAILLILIGVILIAWSDL 109 (113)
T ss_pred HhcCCCCHHHHHHHHHHHHHHHHHhhhhc
Confidence 99999999999999999999999999884
No 38
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.23 E-value=3.3e-12 Score=107.12 Aligned_cols=254 Identities=15% Similarity=0.182 Sum_probs=181.7
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHH--Hhh------hh--h-hHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHhhhh
Q 019344 48 VDAPVTQSAFAYFSLALVYGGVLL--YRR------QR--L-RVAWYWYLLLGFVDVQGNFLVNKAYQFSSITSVTLLDCC 116 (342)
Q Consensus 48 ~~~p~~~~~~r~~~~~~~~~~~~~--~~~------~~--~-~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~ii~~~ 116 (342)
.+.|.+.++++.++...+...+-. ++- ++ + -+..+......+....+....+++++|.+++...+-.++
T Consensus 58 Ld~plf~t~~qcLvt~~~c~~ls~ls~k~~~~ftfp~~~ldl~t~r~vlplsvVfi~mI~fnnlcL~yVgVaFYyvgRsL 137 (347)
T KOG1442|consen 58 LDAPLFITWYQCLVTTSICLVLSSLSVKYPGLFTFPSLQLDLATARQVLPLSVVFILMISFNNLCLKYVGVAFYYVGRSL 137 (347)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHhhccceeccCcccccHHHHHhhcchhheeeeehhccceehhhcceEEEEeccch
Confidence 456999999998887655544433 111 11 1 124456777777777778888999999999999999999
Q ss_pred hHHHHHHHHHHHhcccchHHHHHHHHHHHhhhhhheecCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhccCC-
Q 019344 117 TIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDAGGDGGGGSRPLLGDVLVIAGTIFFATSNVGEEFFVKKKD- 195 (342)
Q Consensus 117 ~pi~~~il~~l~l~e~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~~~~~~~~~- 195 (342)
..+|+.+++++++|+|-+..-..++.+.++|..+=...++ ..+...+.|.++++.+.++-|+..+..|+.....+
T Consensus 138 ttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~lGvdqE~----~~~~ls~~GvifGVlaSl~vAlnaiytkk~l~~v~~ 213 (347)
T KOG1442|consen 138 TTVFTVLLTYVLLKQKTSFFALGCCLLIILGFGLGVDQEG----STGTLSWIGVIFGVLASLAVALNAIYTKKVLPPVGD 213 (347)
T ss_pred hhhHHHHhHHhhcccccccccceeehhheehheecccccc----ccCccchhhhHHHHHHHHHHHHHHHhhheecccccC
Confidence 9999999999999999998888888887777655443331 23467799999999999999999999997665533
Q ss_pred -hHHHHHHHHHHHHHHHHHHHHhhhc--ccc---cccccchhHHH-HHHHHHHHHHHHHHHHHHHHhhhhhHHHHhHhhh
Q 019344 196 -RVEVVCMIGVYGLLVSAVQLSILEL--KSL---ESVEWSTNILL-GFAGYAASSFMFYTLAPFVLKLSGATMFNLSLLT 268 (342)
Q Consensus 196 -~~~~~~~~~~~~~~~~~~~~~~~~~--~~~---~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 268 (342)
-..+..+....+.++.+ |.....+ +.. +.. |.+..+. +.++.. +++.-.....+-++..++...++...-
T Consensus 214 ~iw~lt~ynnv~a~lLfl-pll~lnge~~~v~~~~~l-~a~~Fw~~mtLsgl-fgF~mgyvTg~QIK~TSplThnISgTA 290 (347)
T KOG1442|consen 214 CIWRLTAYNNVNALLLFL-PLLILNGEFQAVVGFPHL-PAIKFWILMTLSGL-FGFAMGYVTGWQIKVTSPLTHNISGTA 290 (347)
T ss_pred eehhhHHHHHHHHHHHHH-HHHHHcchHHHHcCcccc-hHHHHHHHHHHHHH-HHHHhhheeeEEEEecccceeeecHhH
Confidence 34556666677766664 5444432 221 222 2222222 222222 333333334445667888888888887
Q ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHhhccCCC
Q 019344 269 ADMWAVVFRICFYHQKVDWLYFLAFGIVVIGLIIYSTTEK 308 (342)
Q Consensus 269 ~pv~~~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~ 308 (342)
.-....+++..+++|.-+..-|.|-++++.|...|++.++
T Consensus 291 ka~aQTvlAv~~y~E~ks~lwwtsn~~vLvgs~~YT~vk~ 330 (347)
T KOG1442|consen 291 KAAAQTVLAVAYYSETKSGLWWTSNIVVLVGSLAYTLVKE 330 (347)
T ss_pred HHHHHHHHHHHHHHHHhhhheeeeeEEEEehhHHHHHHHH
Confidence 8888899999999999999999999999999999998653
No 39
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=99.18 E-value=1.4e-09 Score=87.52 Aligned_cols=137 Identities=17% Similarity=0.288 Sum_probs=108.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc-------CChHHHHHHHHHHHHHHHHHHHHhhhccccccc-------cc--chhH
Q 019344 169 GDVLVIAGTIFFATSNVGEEFFVKK-------KDRVEVVCMIGVYGLLVSAVQLSILELKSLESV-------EW--STNI 232 (342)
Q Consensus 169 G~~l~l~aa~~~a~~~v~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~--~~~~ 232 (342)
|.++++.+.++.|++.++.|+..++ .++.+...+....+.++..+.....|..+.... +. ....
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 80 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF 80 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence 6789999999999999999987655 467777888888888887666666665432111 01 1122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhHhhhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHhhcc
Q 019344 233 LLGFAGYAASSFMFYTLAPFVLKLSGATMFNLSLLTADMWAVVFRICFYHQKVDWLYFLAFGIVVIGLIIYST 305 (342)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~pv~~~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~ 305 (342)
.......+...+..+......+++.++...++...+..+...+.++++++|+++..+++|.++.+.|.++|+|
T Consensus 81 ~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ysy 153 (153)
T PF03151_consen 81 IFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYSY 153 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheeeC
Confidence 3333334446677778888899999999999999999999999999999999999999999999999999875
No 40
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=99.17 E-value=1.7e-10 Score=89.37 Aligned_cols=103 Identities=28% Similarity=0.538 Sum_probs=85.9
Q ss_pred CchHHHHHHHHHHHHHHHHHHHH--Hhhh--hh-hHHHHHHHHHHHHH-HHHHHHHHHHhhccchhHHHHhhhhhHHHHH
Q 019344 49 DAPVTQSAFAYFSLALVYGGVLL--YRRQ--RL-RVAWYWYLLLGFVD-VQGNFLVNKAYQFSSITSVTLLDCCTIAWAI 122 (342)
Q Consensus 49 ~~p~~~~~~r~~~~~~~~~~~~~--~~~~--~~-~~~~~~~~~~g~~~-~~~~~~~~~al~~~~~~~~~ii~~~~pi~~~ 122 (342)
.+|...+++|+..+.+ ++.... .+++ .. ++++......|++. ...+.++++++++.+++.++++.+++|+++.
T Consensus 17 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~pv~~~ 95 (126)
T PF00892_consen 17 ISPLSITFWRFLIAGI-LLILLLILGRKPFKNLSPRQWLWLLFLGLLGTALAYLLYFYALKYISASIVSILQYLSPVFAA 95 (126)
T ss_pred CCHHHHHHHHHHHHHH-HHHHHHhhccccccCCChhhhhhhhHhhccceehHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence 7799999999999986 333332 2221 22 45677788888885 5569999999999999999999999999999
Q ss_pred HHHHHHhcccchHHHHHHHHHHHhhhhhhe
Q 019344 123 VLTWLFLGTRYSLWQLLGAALCVLGLGLVL 152 (342)
Q Consensus 123 il~~l~l~e~~~~~~~~g~~l~~~Gv~l~~ 152 (342)
+++++++||++++++++|+++++.|++++.
T Consensus 96 i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 96 ILGWLFLGERPSWRQIIGIILIIIGVVLIS 125 (126)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998864
No 41
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=99.13 E-value=1.8e-09 Score=92.56 Aligned_cols=196 Identities=13% Similarity=0.090 Sum_probs=127.1
Q ss_pred chhHHHHhhhhhHHHHHHHHHHHhcccchHHHHHHHHHHHhhhhhheecCCC-----------------CC---CCCCCc
Q 019344 106 SITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDAG-----------------GD---GGGGSR 165 (342)
Q Consensus 106 ~~~~~~ii~~~~pi~~~il~~l~l~e~~~~~~~~g~~l~~~Gv~l~~~~~~~-----------------~~---~~~~~~ 165 (342)
+........+..++++++....+.+||.+..++++..+...|++.....+.+ +. ....++
T Consensus 3 svPa~~~~~s~~l~~v~l~~~~~~~~~~~~~~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~~~~~~~~~~~g~ 82 (222)
T TIGR00803 3 SVPIHIIFKQNNLVLIALGNLLAAGKQVTQLKILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQMVQSSAKTLMFGN 82 (222)
T ss_pred cccchHHHHhcchHHHHHhcccccceeeehHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeecCCCCcccccccc
Confidence 3444566778888888888888888888888888888888888753332210 00 012245
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhccCChHHH--HHHHHHHHHHHHHHHHHhhhcccccccc--cchhHHHHHHHHHH
Q 019344 166 PLLGDVLVIAGTIFFATSNVGEEFFVKKKDRVEV--VCMIGVYGLLVSAVQLSILELKSLESVE--WSTNILLGFAGYAA 241 (342)
Q Consensus 166 ~~~G~~l~l~aa~~~a~~~v~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 241 (342)
...|....+.+..+.+...++.++..|+.+.... ......++.+.........+........ .......... ..
T Consensus 83 ~~~g~~~~l~a~~~~~~~~~y~e~~~k~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~- 160 (222)
T TIGR00803 83 PVVGLSAVLSALLSSGFAGVYFEKILKDGDTMFWSRNLQLPLFGLFSTFSVLLWSDGTLISNFGFFIGYPTAVWIV-GL- 160 (222)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHcccCCCCchHHHHHHHHHHHHHHHHHHHhhcccchhhccCcccCCchHHHHH-HH-
Confidence 5788888888888889999999987665433211 1111233333221111111111111110 0001111111 12
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHhHhhhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHhh
Q 019344 242 SSFMFYTLAPFVLKLSGATMFNLSLLTADMWAVVFRICFYHQKVDWLYFLAFGIVVIGLIIY 303 (342)
Q Consensus 242 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~pv~~~~~~~~~~~e~~~~~~~~G~~li~~g~~l~ 303 (342)
.......+..+.+++.++...+....++++++.++++++|||+++..++.|+.+++.|+.+|
T Consensus 161 ~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~lY 222 (222)
T TIGR00803 161 LNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFLY 222 (222)
T ss_pred HHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEeC
Confidence 33444566788999999999999999999999999999999999999999999999998765
No 42
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.11 E-value=4.3e-09 Score=92.42 Aligned_cols=131 Identities=21% Similarity=0.236 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHhhhhh---hHHHHHHHHHHHHHHH-H
Q 019344 19 TLYLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYRRQRL---RVAWYWYLLLGFVDVQ-G 94 (342)
Q Consensus 19 ~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~p~~~~~~r~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~g~~~~~-~ 94 (342)
..+|.+++...++.++......+....+...++.....+++.++.+++.+.....++.. ++.+...+..+++... .
T Consensus 126 ~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (260)
T TIGR00950 126 NPAGLLLGLGSGISFALGTVLYKRLVKKEGPELLQFTGWVLLLGALLLLPFAWFLGPNPQALSLQWGALLYLGLIGTALA 205 (260)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHH
Confidence 35677777777777777776666655432223445555677787777777765433222 4456667777777654 4
Q ss_pred HHHHHHHhhccchhHHHHhhhhhHHHHHHHHHHHhcccchHHHHHHHHHHHhhhh
Q 019344 95 NFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLG 149 (342)
Q Consensus 95 ~~~~~~al~~~~~~~~~ii~~~~pi~~~il~~l~l~e~~~~~~~~g~~l~~~Gv~ 149 (342)
+.++++++++.+++.++++.++.|+++.+++++++||++++.++.|..+.+.|++
T Consensus 206 ~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~~ 260 (260)
T TIGR00950 206 YFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAVL 260 (260)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999874
No 43
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=99.11 E-value=8.1e-09 Score=91.82 Aligned_cols=221 Identities=14% Similarity=0.197 Sum_probs=127.7
Q ss_pred HHHHHH-HHHHHHHHHHhhccchhHHHHhhhhhHHHHHHHHHHHhcccchHHHHHHHHHHHhhhhhheecCCCCCCCCCC
Q 019344 86 LLGFVD-VQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDAGGDGGGGS 164 (342)
Q Consensus 86 ~~g~~~-~~~~~~~~~al~~~~~~~~~ii~~~~pi~~~il~~l~l~e~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~~~ 164 (342)
+.|+.. ..+..+.+.|+.+.|++..+.+..+.-++.++++..++|||++++++.|+.++++|..++....+++.+..+.
T Consensus 54 ~~G~~~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~~~~~~~~~t~ 133 (300)
T PF05653_consen 54 WIGLLLMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIFAPKEEPIHTL 133 (300)
T ss_pred HHHHHHHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEeCCCCCCcCCH
Confidence 334443 3347788899999999999999999999999999999999999999999999999999877654322211111
Q ss_pred cc---------hHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHH----HHHHhhhc-ccccccccch
Q 019344 165 RP---------LLGDVLVIAGTIFFATSNVGEEFFVKKKDRVEVVCMIGVYGLLVSA----VQLSILEL-KSLESVEWST 230 (342)
Q Consensus 165 ~~---------~~G~~l~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~-~~~~~~~~~~ 230 (342)
++ ....... ...+...+.....+|. .+.+..........+|....+ +...+.+. ...+.. ..+
T Consensus 134 ~~l~~~~~~~~fl~y~~~-~~~~~~~L~~~~~~r~-g~~~i~vyi~i~sl~Gs~tvl~~K~i~~~i~~~~~g~~~f-~~~ 210 (300)
T PF05653_consen 134 DELIALLSQPGFLVYFIL-VLVLILILIFFIKPRY-GRRNILVYISICSLIGSFTVLSAKAISILIKLTFSGDNQF-TYP 210 (300)
T ss_pred HHHHHHhcCcceehhHHH-HHHHHHHHHHhhcchh-cccceEEEEEEeccccchhhhHHHHHHHHHHHHhcCchhh-hhh
Confidence 11 1111111 1112222222222221 122221111111122211110 00111111 111111 122
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH-hHhhhHHHHHHHHHHHHhccc--ccH----HHHHHHHHHHHHHHhh
Q 019344 231 NILLGFAGYAASSFMFYTLAPFVLKLSGATMFN-LSLLTADMWAVVFRICFYHQK--VDW----LYFLAFGIVVIGLIIY 303 (342)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~pv~~~~~~~~~~~e~--~~~----~~~~G~~li~~g~~l~ 303 (342)
..+........+........++++++.++..+. +....-...+++-+.++++|. .++ ....|..+++.|+++.
T Consensus 211 ~~y~l~~~~v~~~~~Q~~~LN~aL~~fd~~~V~P~~~v~~t~~~i~~g~i~f~e~~~~~~~~~~~~~~G~~~ii~GV~lL 290 (300)
T PF05653_consen 211 LTYLLLLVLVVTAVLQLYYLNKALKRFDTSLVVPVYYVFFTLSSIIGGAIFFQEFSRMTAWQIIGFLCGFLIIIIGVFLL 290 (300)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccceEEEeehhHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhhee
Confidence 223344444446666667788999998877433 344455578889999999985 444 4577888899999988
Q ss_pred ccCCCC
Q 019344 304 STTEKD 309 (342)
Q Consensus 304 ~~~~~~ 309 (342)
+..+++
T Consensus 291 ~~~~~~ 296 (300)
T PF05653_consen 291 SSSKDK 296 (300)
T ss_pred eccCch
Confidence 765443
No 44
>PRK13499 rhamnose-proton symporter; Provisional
Probab=98.94 E-value=2.7e-06 Score=76.45 Aligned_cols=226 Identities=12% Similarity=0.077 Sum_probs=141.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHh-hhhhHHHHHHHHHHHhcccc-------hHHHHHHHHHHHhhhh
Q 019344 78 RVAWYWYLLLGFVDVQGNFLVNKAYQFSSITSVTLL-DCCTIAWAIVLTWLFLGTRY-------SLWQLLGAALCVLGLG 149 (342)
Q Consensus 78 ~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~ii-~~~~pi~~~il~~l~l~e~~-------~~~~~~g~~l~~~Gv~ 149 (342)
...+..-++.|++...++.+++.++++.+++.+..+ ..++-+...++..++++|-. ...-.+|+++.++|+.
T Consensus 70 ~~~~~~~~l~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~ 149 (345)
T PRK13499 70 GSTLLPVFLFGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVA 149 (345)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHH
Confidence 456677888999999999999999999999999855 58999999999999988643 2346889999999999
Q ss_pred hhee----cCCCCCC--CCCCcchHHHHHHHHHHHHHHHHH-------HHHHHhh-ccCChHHHHHHHH---HHHHHHHH
Q 019344 150 LVLL----SDAGGDG--GGGSRPLLGDVLVIAGTIFFATSN-------VGEEFFV-KKKDRVEVVCMIG---VYGLLVSA 212 (342)
Q Consensus 150 l~~~----~~~~~~~--~~~~~~~~G~~l~l~aa~~~a~~~-------v~~~~~~-~~~~~~~~~~~~~---~~~~~~~~ 212 (342)
+... .+.++.+ +.+.+...|+.+++.+.+.++.|. ...+... .+.++.....-+. +.+.++.-
T Consensus 150 l~s~Ag~~k~~~~~~~~~~~~~~~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~~~g~~~~~~~lp~~~~~~~G~~~~n 229 (345)
T PRK13499 150 IVGRAGQLKERKMGIKKAEEFNLKKGLILAVMSGIFSACFSFAMDAGKPMHEAAAALGVDPLYAALPSYVVIMGGGAITN 229 (345)
T ss_pred HHHHhhhhcccccccccccccchHhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHH
Confidence 9988 4431111 234566899999999999999999 4443321 1233332222221 23333221
Q ss_pred HHHHhh---hcccc---cccc------cchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhH-H---HHhHhhhHHHHHHHH
Q 019344 213 VQLSIL---ELKSL---ESVE------WSTNILLGFAGYAASSFMFYTLAPFVLKLSGAT-M---FNLSLLTADMWAVVF 276 (342)
Q Consensus 213 ~~~~~~---~~~~~---~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~-~---~~~~~~~~pv~~~~~ 276 (342)
...-.. ..+.. .... +.........|. .....+.++..+-...+.. . ..+.+....+++.++
T Consensus 230 ~~~~~~~~~k~~~~~~~~~~~~~~~~~~~n~l~~~l~G~--~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~Viistlw 307 (345)
T PRK13499 230 LGFCFIRLAKNKDLSLKADFSLAKPLLITNVLLSALAGV--MWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLW 307 (345)
T ss_pred HHHHHHHHhhCCCcccchhccccchhHHHHHHHHHHHHH--HHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHh
Confidence 111111 11111 1111 111111111121 3333344444444444222 1 124445666899999
Q ss_pred HHHHhccccc------HHHHHHHHHHHHHHHhhccC
Q 019344 277 RICFYHQKVD------WLYFLAFGIVVIGLIIYSTT 306 (342)
Q Consensus 277 ~~~~~~e~~~------~~~~~G~~li~~g~~l~~~~ 306 (342)
+.+ +||.=+ ...++|.+++++|..+....
T Consensus 308 Gi~-lkE~K~a~~k~~~~l~~G~vliI~g~~lig~~ 342 (345)
T PRK13499 308 GLV-LKEWKGASRRPVRVLSLGCVVIILAANIVGLG 342 (345)
T ss_pred hhh-hhhccCCCccchhHHHHHHHHHHHHHHHHhhc
Confidence 995 899866 67799999999999887654
No 45
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=98.92 E-value=6.5e-08 Score=86.66 Aligned_cols=139 Identities=11% Similarity=0.096 Sum_probs=105.4
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhhhc-cccc-cc-ccchhHHHHHHHHH
Q 019344 164 SRPLLGDVLVIAGTIFFATSNVGEEFFVKKKDRVEVVCMIGVYGLLVSAVQLSILEL-KSLE-SV-EWSTNILLGFAGYA 240 (342)
Q Consensus 164 ~~~~~G~~l~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~-~~~~~~~~~~~~~~ 240 (342)
.+...|.++++.+++.|+...+..|.. .+.+|.+...+...++.++..+....... .+.. .. ++... .....+..
T Consensus 4 ~~~~~g~~~~l~a~~~wg~~~~~~k~~-~~~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 81 (296)
T PRK15430 4 KQTRQGVLLALAAYFIWGIAPAYFKLI-YYVPADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKI-FMLAVSAV 81 (296)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcCHHHH-HHHHHHHH
Confidence 456789999999999999999999864 67899999999988877655422222211 1100 01 12111 12223333
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHhHhhhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHhhcc
Q 019344 241 ASSFMFYTLAPFVLKLSGATMFNLSLLTADMWAVVFRICFYHQKVDWLYFLAFGIVVIGLIIYST 305 (342)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~pv~~~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~ 305 (342)
.....+.++++++++.++..+++..++.|++..++++++++|+++..++.|.++.++|+.+...
T Consensus 82 -~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~ 145 (296)
T PRK15430 82 -LIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLW 145 (296)
T ss_pred -HHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH
Confidence 5556678899999999999999999999999999999999999999999999999999987653
No 46
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=98.91 E-value=6.5e-08 Score=85.99 Aligned_cols=132 Identities=8% Similarity=0.061 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhhh--cccccccccchhHHHHHHHHHHHHHHHH
Q 019344 170 DVLVIAGTIFFATSNVGEEFFVKKKDRVEVVCMIGVYGLLVSAVQLSILE--LKSLESVEWSTNILLGFAGYAASSFMFY 247 (342)
Q Consensus 170 ~~l~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (342)
.++.+.+++++|...+..|+..++.++.. .+....+.+... |..... ....+..+..++. ....+.. ....++
T Consensus 3 ~~~~~~aa~~~a~~~~~~k~~~~~~~~~~--~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~ 77 (281)
T TIGR03340 3 LTLVVFSALMHAGWNLMAKSHADKEPDFL--WWALLAHSVLLT-PYGLWYLAQVGWSRLPATFWL-LLAISAV-ANMVYF 77 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCchhHHH--HHHHHHHHHHHH-HHHHHhcccCCCCCcchhhHH-HHHHHHH-HHHHHH
Confidence 46889999999999999998777755533 333333433332 333322 1111211112222 2222332 566777
Q ss_pred HHHHHHHhhhhhHHHHhHhhhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHhhccC
Q 019344 248 TLAPFVLKLSGATMFNLSLLTADMWAVVFRICFYHQKVDWLYFLAFGIVVIGLIIYSTT 306 (342)
Q Consensus 248 ~~~~~~~~~~~a~~~~~~~~~~pv~~~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~ 306 (342)
.++.++.++.++...+...++.|+++.++++++++|+++..+++|..+++.|+.+....
T Consensus 78 ~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~ 136 (281)
T TIGR03340 78 LGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLS 136 (281)
T ss_pred HHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcc
Confidence 88888999999999999999999999999999999999999999999999999887653
No 47
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=98.87 E-value=1.4e-07 Score=82.63 Aligned_cols=135 Identities=13% Similarity=0.188 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhhhc-c----cccccccchhH-HHHHHHHHH
Q 019344 168 LGDVLVIAGTIFFATSNVGEEFFVKKKDRVEVVCMIGVYGLLVSAVQLSILEL-K----SLESVEWSTNI-LLGFAGYAA 241 (342)
Q Consensus 168 ~G~~l~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~-~~~~~~~~~ 241 (342)
+|..+.++++++|+...+..|. ..+.+|.+..++.++++.++..+....... . ........... .....+.
T Consensus 2 ~g~~~~i~a~~~wg~~~~~~k~-~~~~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-- 78 (256)
T TIGR00688 2 KGIIVSLLASFLFGYMYYYSKL-LKPLPATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGL-- 78 (256)
T ss_pred CcHHHHHHHHHHHHHHHHHHHH-hccCCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHH--
Confidence 4889999999999999999997 467999999999988877665332222221 1 11111111111 1222222
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHhHhhhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHhhcc
Q 019344 242 SSFMFYTLAPFVLKLSGATMFNLSLLTADMWAVVFRICFYHQKVDWLYFLAFGIVVIGLIIYST 305 (342)
Q Consensus 242 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~pv~~~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~ 305 (342)
.....+.++..+.++.++..++...++.|+++.++++++++|+++..+++|..+.++|+.+...
T Consensus 79 ~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~ 142 (256)
T TIGR00688 79 LIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIV 142 (256)
T ss_pred HHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 3556668888899999999999999999999999999999999999999999999999887643
No 48
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.86 E-value=3.7e-08 Score=85.36 Aligned_cols=225 Identities=13% Similarity=0.148 Sum_probs=134.4
Q ss_pred HHHHHHHHHHH-HHHHHHHhhccchhHHHHhhhhhHHHHHHHHHHHhcccchHHHHHHHHHHHhhhhhheecCCCCCCCC
Q 019344 84 YLLLGFVDVQG-NFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDAGGDGGG 162 (342)
Q Consensus 84 ~~~~g~~~~~~-~~~~~~al~~~~~~~~~ii~~~~pi~~~il~~l~l~e~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~ 162 (342)
....|++..+. ....|.|+.+.|++..+.+..++-+..++++..++|||++....+|+.++++|-.+++...+++.+-.
T Consensus 66 ~Ww~G~ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~haP~e~~i~ 145 (335)
T KOG2922|consen 66 LWWAGMLTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHAPKEQEIE 145 (335)
T ss_pred HHHHHHHHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEecCcccccc
Confidence 34456665555 88889999999999999999999999999999999999999999999999999999988765332211
Q ss_pred C---------CcchHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHH----HHHHhhh-ccccccccc
Q 019344 163 G---------SRPLLGDVLVIAGTIFFATSNVGEEFFVKKKDRVEVVCMIGVYGLLVSA----VQLSILE-LKSLESVEW 228 (342)
Q Consensus 163 ~---------~~~~~G~~l~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~-~~~~~~~~~ 228 (342)
. +...+.....+....+ +-....|..-.+.+...+.....+.|.+-.. +..++-. .+...+...
T Consensus 146 t~~el~~~~~~~~Fliy~~~iil~~~--il~~~~~p~~g~tnilvyi~i~s~iGS~tV~svKalg~aiklt~~g~~ql~~ 223 (335)
T KOG2922|consen 146 SVEEVWELATEPGFLVYVIIIILIVL--ILIFFYAPRYGQTNILVYIGICSLIGSLTVMSVKALGIAIKLTFSGNNQLFY 223 (335)
T ss_pred cHHHHHHHhcCccHHHHHHHHHHHHH--HHheeecccccccceeehhhHhhhhcceeeeeHHHHHHHHHHHhcCCccccc
Confidence 1 1111111111111111 1111112111223344444333333322110 0111111 111112111
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH-hHhhhHHHHHHHHHHHHhcccc--cH----HHHHHHHHHHHHHH
Q 019344 229 STNILLGFAGYAASSFMFYTLAPFVLKLSGATMFN-LSLLTADMWAVVFRICFYHQKV--DW----LYFLAFGIVVIGLI 301 (342)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~pv~~~~~~~~~~~e~~--~~----~~~~G~~li~~g~~ 301 (342)
+..+.+.+....+......-.+++++..++..+. +....-..++++-+.++|+|.- +. ....|...++.|++
T Consensus 224 -~~ty~~~l~~~~~~~~Q~~yLNkAL~~fntslV~PiyyV~fTtl~I~as~I~Fkew~~~~~~~i~~~~~Gf~ti~~G~f 302 (335)
T KOG2922|consen 224 -PLTWIFLLVVATCVSTQMNYLNKALDLFNTSIVSPIYYVMFTTLVILASAILFKEWSGQDALDIAGELCGFVTIFLGIF 302 (335)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhHHHhhheee
Confidence 1223333333334444445568888887776544 4455677889999999999854 32 57789999999999
Q ss_pred hhccCCCCCC
Q 019344 302 IYSTTEKDLN 311 (342)
Q Consensus 302 l~~~~~~~~~ 311 (342)
+....++++.
T Consensus 303 lL~~~kd~~~ 312 (335)
T KOG2922|consen 303 LLHRTKDMEI 312 (335)
T ss_pred Eeeeeccccc
Confidence 9876654443
No 49
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=98.80 E-value=2.5e-07 Score=84.56 Aligned_cols=138 Identities=15% Similarity=0.120 Sum_probs=92.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHH-HHHhhhhh-------hHHHHHHHHHHH
Q 019344 18 RTLYLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGV-LLYRRQRL-------RVAWYWYLLLGF 89 (342)
Q Consensus 18 ~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~p~~~~~~r~~~~~~~~~~~-~~~~~~~~-------~~~~~~~~~~g~ 89 (342)
+.+.|.++....++.++......+....+ ..++...+++...+..+.+... ....+... .......+..++
T Consensus 186 ~~~lG~~l~l~aa~~wa~~~il~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~y~~i 264 (358)
T PLN00411 186 DWLIGGALLTIQGIFVSVSFILQAHIMSE-YPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWIIHFDITLITIVTMAI 264 (358)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCcHhHHHHHHHHHHHHHHHHHHHHHccCCcccceeccchHHHHHHHHHH
Confidence 34557777766677776665555544433 3334444555544443333222 22211110 111112333444
Q ss_pred HHHHHHHHHHHHhhccchhHHHHhhhhhHHHHHHHHHHHhcccchHHHHHHHHHHHhhhhhheecCC
Q 019344 90 VDVQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDA 156 (342)
Q Consensus 90 ~~~~~~~~~~~al~~~~~~~~~ii~~~~pi~~~il~~l~l~e~~~~~~~~g~~l~~~Gv~l~~~~~~ 156 (342)
.....+.++++++++.+++.+++..++.|++++++++++++|++++.+++|.++.+.|+.++..+..
T Consensus 265 ~t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~~~~ 331 (358)
T PLN00411 265 ITSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMWGKA 331 (358)
T ss_pred HHHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhhhh
Confidence 4444588899999999999999999999999999999999999999999999999999999887543
No 50
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=98.76 E-value=7.2e-07 Score=79.80 Aligned_cols=132 Identities=16% Similarity=0.027 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHhhhh-h--hHHHHHHHHHHHHHHHH-HH
Q 019344 21 YLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYRRQR-L--RVAWYWYLLLGFVDVQG-NF 96 (342)
Q Consensus 21 ~~~~~~~~~al~~~~~~~~~~~~~~~~~~~p~~~~~~r~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~g~~~~~~-~~ 96 (342)
.|.+++...++.++......+...+ ..+|.... +...+..+++.++....... . ...+...+..|++.... +.
T Consensus 148 ~G~ll~l~aa~~~a~~~v~~r~~~~--~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lgv~~t~~~~~ 224 (293)
T PRK10532 148 TGAALALGAGACWAIYILSGQRAGA--EHGPATVA-IGSLIAALIFVPIGALQAGEALWHWSILPLGLAVAILSTALPYS 224 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc--cCCchHHH-HHHHHHHHHHHHHHHHccCcccCCHHHHHHHHHHHHHHHHHHHH
Confidence 4666666666666665555554432 23455544 33444455555554432221 1 23344456777776666 88
Q ss_pred HHHHHhhccchhHHHHhhhhhHHHHHHHHHHHhcccchHHHHHHHHHHHhhhhhheecC
Q 019344 97 LVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSD 155 (342)
Q Consensus 97 ~~~~al~~~~~~~~~ii~~~~pi~~~il~~l~l~e~~~~~~~~g~~l~~~Gv~l~~~~~ 155 (342)
++++++++.+++.++++.+++|+++.++++++++|++++.+++|..+.+.|++......
T Consensus 225 l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~~ 283 (293)
T PRK10532 225 LEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLTI 283 (293)
T ss_pred HHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999987654
No 51
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=98.74 E-value=3.7e-07 Score=81.64 Aligned_cols=132 Identities=15% Similarity=-0.007 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHhhh---h--hhHHHHHHHHHHHHHHHH-
Q 019344 21 YLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYRRQ---R--LRVAWYWYLLLGFVDVQG- 94 (342)
Q Consensus 21 ~~~~~~~~~al~~~~~~~~~~~~~~~~~~~p~~~~~~r~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~~g~~~~~~- 94 (342)
.|.+++...++.++......+... ..++...+.++..++.+.+.++...... . ..+.|...+..+++....
T Consensus 150 ~G~l~~l~a~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~i~~s~~~ 226 (292)
T PRK11272 150 WGAILILIASASWAFGSVWSSRLP---LPVGMMAGAAEMLAAGVVLLIASLLSGERLTALPTLSGFLALGYLAVFGSIIA 226 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC---CCcchHHHHHHHHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHHHHHHH
Confidence 455556555555555544443322 1234455566766676666555442211 1 135677777788876555
Q ss_pred HHHHHHHhhccchhHHHHhhhhhHHHHHHHHHHHhcccchHHHHHHHHHHHhhhhhheecC
Q 019344 95 NFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSD 155 (342)
Q Consensus 95 ~~~~~~al~~~~~~~~~ii~~~~pi~~~il~~l~l~e~~~~~~~~g~~l~~~Gv~l~~~~~ 155 (342)
+.++++++++.+++.++++.++.|++++++++++++|++++.+++|..+.+.|+++....+
T Consensus 227 ~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~~ 287 (292)
T PRK11272 227 ISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLGK 287 (292)
T ss_pred HHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999999999999999999999999999999999999999986654
No 52
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=98.70 E-value=1.2e-06 Score=67.71 Aligned_cols=122 Identities=7% Similarity=0.058 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhhhcccccccccchhHHHHHHHHHHHHHHHH
Q 019344 168 LGDVLVIAGTIFFATSNVGEEFFVKKKDRVEVVCMIGVYGLLVSAVQLSILELKSLESVEWSTNILLGFAGYAASSFMFY 247 (342)
Q Consensus 168 ~G~~l~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (342)
.|.++.+.+.++.+...++.|+-.++.+..+..... ... + ....+ .....+.+.. +...++
T Consensus 2 ~~~~~i~~sv~l~~~gQl~~K~g~~~~g~~~~~~~~-----~~~-~-~~~~~-----------p~~~i~lgl~-~~~la~ 62 (129)
T PRK02971 2 MGYLWGLASVLLASVAQLSLKWGMSRLPLLSHAWDF-----IAA-L-LAFGL-----------ALRAVLLGLA-GYALSM 62 (129)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhCCCccchhHH-----HHH-H-HHHhc-----------cHHHHHHHHH-HHHHHH
Confidence 477888999999999999999887775543322110 000 0 00000 0123445565 777888
Q ss_pred HHHHHHHhhhhhHHHHhHhhhHHHHHHHHHHH--HhcccccHHHHHHHHHHHHHHHhhccCCC
Q 019344 248 TLAPFVLKLSGATMFNLSLLTADMWAVVFRIC--FYHQKVDWLYFLAFGIVVIGLIIYSTTEK 308 (342)
Q Consensus 248 ~~~~~~~~~~~a~~~~~~~~~~pv~~~~~~~~--~~~e~~~~~~~~G~~li~~g~~l~~~~~~ 308 (342)
.+|..++++.+...+.......++...+.++. +|||++|+.+++|.++|++|+++..+.++
T Consensus 63 ~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~~ 125 (129)
T PRK02971 63 LCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPTT 125 (129)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCCC
Confidence 99999999999998887777777777777774 89999999999999999999999886544
No 53
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=98.60 E-value=3.9e-06 Score=67.31 Aligned_cols=130 Identities=15% Similarity=0.129 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc-----CCCchHHHHHHHHHHHHHHHHHHHH-Hhhhh---------------hhHH
Q 019344 22 LLFLGQLVSFTLALMSFTSSLIADL-----GVDAPVTQSAFAYFSLALVYGGVLL-YRRQR---------------LRVA 80 (342)
Q Consensus 22 ~~~~~~~~al~~~~~~~~~~~~~~~-----~~~~p~~~~~~r~~~~~~~~~~~~~-~~~~~---------------~~~~ 80 (342)
|++++....++.+.-....+...++ ...+|..+..+....+.+++.+... .++.+ ..+.
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 80 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF 80 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence 4566667777777777777777766 3566888888887777776666543 11111 1234
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccchhHHHHhhhhhHHHHHHHHHHHhcccchHHHHHHHHHHHhhhhhh
Q 019344 81 WYWYLLLGFVDVQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLV 151 (342)
Q Consensus 81 ~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~ii~~~~pi~~~il~~l~l~e~~~~~~~~g~~l~~~Gv~l~ 151 (342)
+...+..|++....+...+..++++++...+++.....+.+.+++.++++|+++..++.|+.++++|+.+-
T Consensus 81 ~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Y 151 (153)
T PF03151_consen 81 IFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLY 151 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHhee
Confidence 55667777777777999999999999999999999999999999999999999999999999999998763
No 54
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.60 E-value=1.4e-06 Score=65.60 Aligned_cols=64 Identities=11% Similarity=0.002 Sum_probs=58.6
Q ss_pred HHHHH-HHHHHHHhhccchhHHHHhhhhhHHHHHHHHHHHhcccchHHHHHHHHHHHhhhhhhee
Q 019344 90 VDVQG-NFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLL 153 (342)
Q Consensus 90 ~~~~~-~~~~~~al~~~~~~~~~ii~~~~pi~~~il~~l~l~e~~~~~~~~g~~l~~~Gv~l~~~ 153 (342)
..... ..++..++++.|.+.+..+.++.++++.+++++++|||+++++++|+.+++.|++++..
T Consensus 45 ~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~~ 109 (111)
T PRK15051 45 ACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILGS 109 (111)
T ss_pred HHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 44444 88899999999999999999999999999999999999999999999999999988754
No 55
>PRK11689 aromatic amino acid exporter; Provisional
Probab=98.59 E-value=1.8e-06 Score=77.25 Aligned_cols=77 Identities=22% Similarity=0.094 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHhhhhhHHHHHHHHHHHhcccchHHHHHHHHHHHhhhhhheecC
Q 019344 79 VAWYWYLLLGFVDVQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSD 155 (342)
Q Consensus 79 ~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~ii~~~~pi~~~il~~l~l~e~~~~~~~~g~~l~~~Gv~l~~~~~ 155 (342)
..|...+..|+.....+.++++++++.+++.++.+.++.|++..++++++++|+++..+++|.++++.|+.+....+
T Consensus 213 ~~~~~l~~~~~~t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~~~ 289 (295)
T PRK11689 213 PAIIKLLLAAAAMGFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWLAT 289 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhhhH
Confidence 45656666666555569999999999999999999999999999999999999999999999999999998886654
No 56
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=98.56 E-value=5.3e-06 Score=74.42 Aligned_cols=136 Identities=15% Similarity=0.087 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHHHH-HHhhh--------hh-hHHHHHHHHHH
Q 019344 20 LYLLFLGQLVSFTLALMSFTSSLIADLGVD-APVTQSAFAYFSLALVYGGVL-LYRRQ--------RL-RVAWYWYLLLG 88 (342)
Q Consensus 20 ~~~~~~~~~~al~~~~~~~~~~~~~~~~~~-~p~~~~~~r~~~~~~~~~~~~-~~~~~--------~~-~~~~~~~~~~g 88 (342)
+.|..++...++.++......+...++... .......+......+.+.... ..... .. ...|...+..|
T Consensus 142 ~~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 221 (299)
T PRK11453 142 MLGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYLA 221 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHHH
Confidence 357777777777777766666654433221 122223232333222222111 11111 11 34567777788
Q ss_pred HHHHHH-HHHHHHHhhccchhHHHHhhhhhHHHHHHHHHHHhcccchHHHHHHHHHHHhhhhhheecC
Q 019344 89 FVDVQG-NFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSD 155 (342)
Q Consensus 89 ~~~~~~-~~~~~~al~~~~~~~~~ii~~~~pi~~~il~~l~l~e~~~~~~~~g~~l~~~Gv~l~~~~~ 155 (342)
++.... +.+++.++++.++..++.+..+.|++..++++++++|+++..+++|..+.+.|+.+...+.
T Consensus 222 i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~~ 289 (299)
T PRK11453 222 FVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFGL 289 (299)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcch
Confidence 777766 8899999999999999999999999999999999999999999999999999999877654
No 57
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=98.56 E-value=1.6e-06 Score=77.32 Aligned_cols=131 Identities=11% Similarity=0.064 Sum_probs=97.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHH----HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Q 019344 18 RTLYLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYF----SLALVYGGVLLYRRQRLRVAWYWYLLLGFVDVQ 93 (342)
Q Consensus 18 ~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~p~~~~~~r~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 93 (342)
+..+|++.+.++++..+......+.. ..+|...++.... .+.++..++ .+.++...+..+..++.|++...
T Consensus 149 ~~~~Gi~~~l~sg~~y~~~~~~~~~~----~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~Gi~~~i 223 (290)
T TIGR00776 149 NFKKGILLLLMSTIGYLVYVVVAKAF----GVDGLSVLLPQAIGMVIGGIIFNLGH-ILAKPLKKYAILLNILPGLMWGI 223 (290)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHc----CCCcceehhHHHHHHHHHHHHHHHHH-hcccchHHHHHHHHHHHHHHHHH
Confidence 34679999988888877766666543 2456666544443 334434333 11122223344455668888766
Q ss_pred HHHHHHHHhh-ccchhHHHHhhhhhHHHHHHHHHHHhcccchHHHH----HHHHHHHhhhhhhee
Q 019344 94 GNFLVNKAYQ-FSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQL----LGAALCVLGLGLVLL 153 (342)
Q Consensus 94 ~~~~~~~al~-~~~~~~~~ii~~~~pi~~~il~~l~l~e~~~~~~~----~g~~l~~~Gv~l~~~ 153 (342)
.+.+++.+.+ +.+++.++++.+..|+...+.+.+++||+.+++++ +|.++.+.|+.++..
T Consensus 224 a~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~~ 288 (290)
T TIGR00776 224 GNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILGI 288 (290)
T ss_pred HHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHhc
Confidence 7999999999 99999999999999999999999999999999999 999999999988754
No 58
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=98.47 E-value=2e-08 Score=83.47 Aligned_cols=261 Identities=15% Similarity=0.120 Sum_probs=166.2
Q ss_pred HHHHHHHH-HhcCCCchHHHHHHHHHHHHHHHHHHHHHhhhhh-hHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHh
Q 019344 36 MSFTSSLI-ADLGVDAPVTQSAFAYFSLALVYGGVLLYRRQRL-RVAWYWYLLLGFVDVQGNFLVNKAYQFSSITSVTLL 113 (342)
Q Consensus 36 ~~~~~~~~-~~~~~~~p~~~~~~r~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~ii 113 (342)
.+|.+-.+ ..|-...|...+.--.+.+.++....++...+.. .+.+..-++.|.+..+++...+.|.++.+++.+..+
T Consensus 12 l~WGsip~v~~k~GG~p~qQ~lGtT~GALifaiiv~~~~~p~~T~~~~iv~~isG~~Ws~GQ~~Qfka~~~iGVSkamPi 91 (288)
T COG4975 12 LGWGSIPLVANKFGGKPYQQTLGTTLGALIFAIIVFLFVSPELTLTIFIVGFISGAFWSFGQANQFKAIQLIGVSKAMPI 91 (288)
T ss_pred HHhcccceeeeecCCChhHhhhhccHHHHHHHHHHheeecCccchhhHHHHHHhhhHhhhhhhhhhhheeeeeeeccccc
Confidence 33444333 3444456777764444445555444444433333 456666788888889999999999999999999977
Q ss_pred h-hhhHHHHHHHHHHHhcccchHHH----HHHHHHHHhhhhhheecCCCCCC-CCCCcchHHHHHHHHHHHHHHHHHHHH
Q 019344 114 D-CCTIAWAIVLTWLFLGTRYSLWQ----LLGAALCVLGLGLVLLSDAGGDG-GGGSRPLLGDVLVIAGTIFFATSNVGE 187 (342)
Q Consensus 114 ~-~~~pi~~~il~~l~l~e~~~~~~----~~g~~l~~~Gv~l~~~~~~~~~~-~~~~~~~~G~~l~l~aa~~~a~~~v~~ 187 (342)
. .++.+-+.+++++.++|-.+..+ .+++++.++|+.+..+.+.++.+ +..++...|....+.+.+.|-.|.+..
T Consensus 92 StG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~~nk~~~~~~n~kkgi~~L~iSt~GYv~yvvl~ 171 (288)
T COG4975 92 STGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDRNNKEEENPSNLKKGIVILLISTLGYVGYVVLF 171 (288)
T ss_pred cchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeeccccccccChHhhhhheeeeeeeccceeeeEeee
Confidence 5 78888899999999999887665 56777888999999888753222 233446789999999999999999987
Q ss_pred HHhhccCChHHHHHHHHHHHHHHHHHHHHhhhc-ccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhHh
Q 019344 188 EFFVKKKDRVEVVCMIGVYGLLVSAVQLSILEL-KSLESVEWSTNILLGFAGYAASSFMFYTLAPFVLKLSGATMFNLSL 266 (342)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 266 (342)
+... .+-.+...-+ ..|.++..+.+...+. ...+...|..... |. .....+.++..+.++.+.+..=-..
T Consensus 172 ~~f~--v~g~saiLPq-AiGMv~~ali~~~~~~~~~~~K~t~~nii~----G~--~Wa~GNl~ml~a~~~~GvAt~FSlS 242 (288)
T COG4975 172 QLFD--VDGLSAILPQ-AIGMVIGALILGFFKMEKRFNKYTWLNIIP----GL--IWAIGNLFMLLAAQKVGVATSFSLS 242 (288)
T ss_pred cccc--ccchhhhhHH-HHHHHHHHHHHhhcccccchHHHHHHHHhh----HH--HHHhhHHHHHHhhhhhceeeeeeHh
Confidence 7642 4444444333 4555555433333332 1111222211111 11 2222334444455554444332333
Q ss_pred hhHHHHHHHHHHHHhcccccHHH----HHHHHHHHHHHHhhcc
Q 019344 267 LTADMWAVVFRICFYHQKVDWLY----FLAFGIVVIGLIIYST 305 (342)
Q Consensus 267 ~~~pv~~~~~~~~~~~e~~~~~~----~~G~~li~~g~~l~~~ 305 (342)
.+..+++.+-+.++++|+=|..+ ++|.++++.|..+...
T Consensus 243 QlgViisTiGGIl~L~ekKtkkEm~~v~iGiilivvgai~lg~ 285 (288)
T COG4975 243 QLGVIISTIGGILFLGEKKTKKEMVYVIIGIILIVVGAILLGI 285 (288)
T ss_pred hheeeeeecceEEEEeccCchhhhhhhhhhHHHHHHHhhhhhe
Confidence 34458899999999999988865 5678888877766543
No 59
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=98.47 E-value=3.8e-06 Score=75.54 Aligned_cols=135 Identities=13% Similarity=0.076 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHhh-hh-hhH---H----------HHHHH
Q 019344 21 YLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYRR-QR-LRV---A----------WYWYL 85 (342)
Q Consensus 21 ~~~~~~~~~al~~~~~~~~~~~~~~~~~~~p~~~~~~r~~~~~~~~~~~~~~~~-~~-~~~---~----------~~~~~ 85 (342)
.|.+++...++.++......+....+...+|...+.+....+.+.+.|+..... .. ... + +...+
T Consensus 145 ~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (302)
T TIGR00817 145 AGFLSAMISNITFVSRNIFSKKAMTIKSLDKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVSL 224 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHHH
Confidence 455555555555555444444433322456788888888777777777654221 11 110 0 11112
Q ss_pred HHHHHHHHH-HHHHHHHhhccchhHHHHhhhhhHHHHHHHHHHHhcccchHHHHHHHHHHHhhhhhheecC
Q 019344 86 LLGFVDVQG-NFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSD 155 (342)
Q Consensus 86 ~~g~~~~~~-~~~~~~al~~~~~~~~~ii~~~~pi~~~il~~l~l~e~~~~~~~~g~~l~~~Gv~l~~~~~ 155 (342)
..+...... +.+.+.++++.++..+++...+.|+++.++++++++|+++..+++|..+++.|+.+.....
T Consensus 225 ~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~~k 295 (302)
T TIGR00817 225 VAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSRVK 295 (302)
T ss_pred HHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHHHh
Confidence 222212222 4566789999999999999999999999999999999999999999999999999987654
No 60
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=98.38 E-value=3.1e-05 Score=70.94 Aligned_cols=137 Identities=10% Similarity=0.081 Sum_probs=96.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhccCC-hHHHHHHHHHHHHHHHHHHHHhhhcccccccc-cc-hhHHHHHHHHHHH
Q 019344 166 PLLGDVLVIAGTIFFATSNVGEEFFVKKKD-RVEVVCMIGVYGLLVSAVQLSILELKSLESVE-WS-TNILLGFAGYAAS 242 (342)
Q Consensus 166 ~~~G~~l~l~aa~~~a~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~ 242 (342)
+..-..+.+.--.+...+++.+|...+..+ |..+..++...+.++..+.. ..+....+... +. .+..+...+++
T Consensus 47 ~~~~~~~~~~wy~~s~~~~~~nK~vl~~~~~P~~l~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~llp~gl~-- 123 (350)
T PTZ00343 47 KWKLALLFLTWYALNVLYVVDNKLALNMLPLPWTISSLQLFVGWLFALLYW-ATGFRKIPRIKSLKLFLKNFLPQGLC-- 123 (350)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHH-HhCCCCCCCCCCHHHHHHHHHHHHHH--
Confidence 344444444445555667888999998888 99999999888776653322 22221112221 11 11223333332
Q ss_pred HHHHHHHHHHHHhhhhhHHHHhHhhhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHhhcc
Q 019344 243 SFMFYTLAPFVLKLSGATMFNLSLLTADMWAVVFRICFYHQKVDWLYFLAFGIVVIGLIIYST 305 (342)
Q Consensus 243 ~~~~~~~~~~~~~~~~a~~~~~~~~~~pv~~~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~ 305 (342)
....+...+.++++.++....+...++|++++++++++++|+++..++.|.+++++|+.+...
T Consensus 124 ~~~~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~ 186 (350)
T PTZ00343 124 HLFVHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASV 186 (350)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheec
Confidence 233345566789999999999999999999999999999999999999999999999998764
No 61
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=98.37 E-value=1.2e-05 Score=61.08 Aligned_cols=67 Identities=15% Similarity=0.280 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHhHhhhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHhhccCCCC
Q 019344 242 SSFMFYTLAPFVLKLSGATMFNLSLLTADMWAVVFRICFYHQKVDWLYFLAFGIVVIGLIIYSTTEKD 309 (342)
Q Consensus 242 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~pv~~~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~~ 309 (342)
.....+.++..+.++.++ .+.....+.|+++.+++.++++|+++..++.|..++++|+.+..+.+..
T Consensus 44 ~~~~~~~~~~~a~~~~~~-~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~~~~~ 110 (113)
T PF13536_consen 44 GFGVAYLLFFYALSYAPA-LVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAWSDLT 110 (113)
T ss_pred HHHHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhhcc
Confidence 334567888889999885 6678888999999999999999999999999999999999999886543
No 62
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=98.30 E-value=4.4e-05 Score=67.77 Aligned_cols=133 Identities=29% Similarity=0.297 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHH-HHHHHHHHHHHHHHHHhh--hhhhHHHHHHHHHHHHHHH-H
Q 019344 19 TLYLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSA-FAYFSLALVYGGVLLYRR--QRLRVAWYWYLLLGFVDVQ-G 94 (342)
Q Consensus 19 ~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~p~~~~~-~r~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~-~ 94 (342)
...|..++...++.++......+... ..++..... +..........+...... ......+......|++... .
T Consensus 152 ~~~g~~~~l~a~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~ 228 (292)
T COG0697 152 SLLGLLLALAAALLWALYTALVKRLS---RLGPVTLALLLQLLLALLLLLLFFLSGFGAPILSRAWLLLLYLGVFSTGLA 228 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc---CCChHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHH
Confidence 35667777766666665444444433 233444443 333322333333332222 2235678888888888886 5
Q ss_pred HHHHHHHhhccchhHHHHhhhhhHHHHHHHHHHHhcccchHHHHHHHHHHHhhhhhheec
Q 019344 95 NFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLS 154 (342)
Q Consensus 95 ~~~~~~al~~~~~~~~~ii~~~~pi~~~il~~l~l~e~~~~~~~~g~~l~~~Gv~l~~~~ 154 (342)
+.++++++++.+++.++.+..+.|++..++++++++|+++..+++|..+.+.|+.+....
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~ 288 (292)
T COG0697 229 YLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR 288 (292)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999999999999988765
No 63
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=98.27 E-value=2.8e-05 Score=67.01 Aligned_cols=142 Identities=13% Similarity=0.151 Sum_probs=104.2
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhhhc-ccccccccchhHHHHHHHHHHH
Q 019344 164 SRPLLGDVLVIAGTIFFATSNVGEEFFVKKKDRVEVVCMIGVYGLLVSAVQLSILEL-KSLESVEWSTNILLGFAGYAAS 242 (342)
Q Consensus 164 ~~~~~G~~l~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 242 (342)
.+...|+++++.|-+.|+..-.+.|- .+..++.++......++..+.++....... .+..+.--+......+......
T Consensus 3 ~~~~~Gil~~l~Ay~lwG~lp~y~kl-l~~~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~l 81 (293)
T COG2962 3 KDSRKGILLALLAYLLWGLLPLYFKL-LEPLPATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTALL 81 (293)
T ss_pred CcccchhHHHHHHHHHHHHHHHHHHH-HccCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHHH
Confidence 45568999999999999998877764 578899999998888888877654444332 2222211111122222222213
Q ss_pred HHHHHHHHHHHHhhhhhHHHHhHhhhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHhhccC
Q 019344 243 SFMFYTLAPFVLKLSGATMFNLSLLTADMWAVVFRICFYHQKVDWLYFLAFGIVVIGLIIYSTT 306 (342)
Q Consensus 243 ~~~~~~~~~~~~~~~~a~~~~~~~~~~pv~~~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~ 306 (342)
.......+.++.+.....-+++-.+++|++.+++|.++++|+++..|++...+..+|+....+.
T Consensus 82 i~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~ 145 (293)
T COG2962 82 IGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWL 145 (293)
T ss_pred HHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHH
Confidence 3334466778889989999999999999999999999999999999999999999999876653
No 64
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.25 E-value=6.4e-05 Score=56.64 Aligned_cols=64 Identities=14% Similarity=0.176 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHhHhhhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHhhcc
Q 019344 242 SSFMFYTLAPFVLKLSGATMFNLSLLTADMWAVVFRICFYHQKVDWLYFLAFGIVVIGLIIYST 305 (342)
Q Consensus 242 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~pv~~~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~ 305 (342)
+...++.++..++++.+...+-....+.++.+.+.++++|||++++.+++|..++++|+.+...
T Consensus 46 ~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~~ 109 (111)
T PRK15051 46 CLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILGS 109 (111)
T ss_pred HHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 5566778889999999988887777799999999999999999999999999999999987653
No 65
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=98.22 E-value=9.3e-06 Score=62.77 Aligned_cols=72 Identities=24% Similarity=0.285 Sum_probs=63.5
Q ss_pred HHHHHHHHHHH-HHHHHHHhhccchhHHHHhhhhhHHHHHHHHHH--HhcccchHHHHHHHHHHHhhhhhheecC
Q 019344 84 YLLLGFVDVQG-NFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWL--FLGTRYSLWQLLGAALCVLGLGLVLLSD 155 (342)
Q Consensus 84 ~~~~g~~~~~~-~~~~~~al~~~~~~~~~ii~~~~pi~~~il~~l--~l~e~~~~~~~~g~~l~~~Gv~l~~~~~ 155 (342)
++..|+..... +.++..++++.|++.+..+.+..++++.+.++. ++||++++.+++|+.+.++|++++..++
T Consensus 50 ~i~lgl~~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~ 124 (129)
T PRK02971 50 AVLLGLAGYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPT 124 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCC
Confidence 45666666666 999999999999999999999999888888885 8999999999999999999999988654
No 66
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=97.94 E-value=0.00015 Score=55.07 Aligned_cols=67 Identities=10% Similarity=0.275 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHhhhhhHH-HHhHhhhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHhhccCCC
Q 019344 242 SSFMFYTLAPFVLKLSGATM-FNLSLLTADMWAVVFRICFYHQKVDWLYFLAFGIVVIGLIIYSTTEK 308 (342)
Q Consensus 242 ~~~~~~~~~~~~~~~~~a~~-~~~~~~~~pv~~~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~ 308 (342)
+....+.++..++++.+... .+...-+..+...+.++++|+|++++.+++|..+|++|++..+...+
T Consensus 39 ~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~~ 106 (120)
T PRK10452 39 MISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGTR 106 (120)
T ss_pred HHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCCC
Confidence 44455677777888866653 33333456688999999999999999999999999999998866543
No 67
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=97.88 E-value=0.00055 Score=57.83 Aligned_cols=132 Identities=15% Similarity=-0.009 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHhhhhh---hHHHHHHHHHHHHHHHH-HHH
Q 019344 22 LLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYRRQRL---RVAWYWYLLLGFVDVQG-NFL 97 (342)
Q Consensus 22 ~~~~~~~~al~~~~~~~~~~~~~~~~~~~p~~~~~~r~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~g~~~~~~-~~~ 97 (342)
|..++.....+|+...+..+...+ ..+--.-+..-+.+++++.+|+-....... ..-...-+..|++.... +.+
T Consensus 149 Gv~~Al~AG~~Wa~YIv~G~r~g~--~~~g~~g~a~gm~vAaviv~Pig~~~ag~~l~~p~ll~laLgvavlSSalPYsL 226 (292)
T COG5006 149 GVALALGAGACWALYIVLGQRAGR--AEHGTAGVAVGMLVAALIVLPIGAAQAGPALFSPSLLPLALGVAVLSSALPYSL 226 (292)
T ss_pred HHHHHHHHhHHHHHHHHHcchhcc--cCCCchHHHHHHHHHHHHHhhhhhhhcchhhcChHHHHHHHHHHHHhcccchHH
Confidence 444444455555555444444432 223233334667788888888776433322 22334446667777777 888
Q ss_pred HHHHhhccchhHHHHhhhhhHHHHHHHHHHHhcccchHHHHHHHHHHHhhhhhheecC
Q 019344 98 VNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSD 155 (342)
Q Consensus 98 ~~~al~~~~~~~~~ii~~~~pi~~~il~~l~l~e~~~~~~~~g~~l~~~Gv~l~~~~~ 155 (342)
-..++++.|...-.++.++.|.+.++.+.++++|+++..||.++...+.+..=.+...
T Consensus 227 EmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~~lt~ 284 (292)
T COG5006 227 EMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGSTLTA 284 (292)
T ss_pred HHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcccccc
Confidence 8999999999999999999999999999999999999999999999988877555543
No 68
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=97.87 E-value=0.00073 Score=60.94 Aligned_cols=70 Identities=14% Similarity=0.236 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHhHhhhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHhhccCCCC
Q 019344 240 AASSFMFYTLAPFVLKLSGATMFNLSLLTADMWAVVFRICFYHQKVDWLYFLAFGIVVIGLIIYSTTEKD 309 (342)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~pv~~~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~~ 309 (342)
...-..++.+...+.++++.+...+......++++++++++++++.++.+++|+.+.++|+.+....+..
T Consensus 86 a~~Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~~ 155 (334)
T PF06027_consen 86 ALLDVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDVL 155 (334)
T ss_pred HHHHHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeeccc
Confidence 4477778888999999999999999999999999999999999999999999999999999988876543
No 69
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=97.83 E-value=0.00013 Score=55.30 Aligned_cols=72 Identities=15% Similarity=0.172 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhccchhHHHHhh-hhhHHHHHHHHHHHhcccchHHHHHHHHHHHhhhhhheecC
Q 019344 84 YLLLGFVDVQGNFLVNKAYQFSSITSVTLLD-CCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSD 155 (342)
Q Consensus 84 ~~~~g~~~~~~~~~~~~al~~~~~~~~~ii~-~~~pi~~~il~~l~l~e~~~~~~~~g~~l~~~Gv~l~~~~~ 155 (342)
.+..-++...++.++..++++.|.+.+..+. ...-+.+.+++.+++||++++.+++|+.+.++|++.+-..+
T Consensus 33 ~~~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~ 105 (120)
T PRK10452 33 FILMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGT 105 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCC
Confidence 3444444445588899999999999998775 79999999999999999999999999999999999987654
No 70
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=97.82 E-value=0.00048 Score=59.73 Aligned_cols=129 Identities=11% Similarity=0.021 Sum_probs=85.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHhhhh-hhHHHHHHHHHHHHHHHHH
Q 019344 17 LRTLYLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYRRQR-LRVAWYWYLLLGFVDVQGN 95 (342)
Q Consensus 17 ~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~p~~~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~ 95 (342)
+++.+|+..-.+..+. .+....+.+..+.+|+...+-+.....+....+....+++ .++..++-++.|++...++
T Consensus 134 ~~~~kgi~~Ll~stig----y~~Y~~~~~~~~~~~~~~~lPqaiGm~i~a~i~~~~~~~~~~~k~~~~nil~G~~w~ign 209 (269)
T PF06800_consen 134 SNMKKGILALLISTIG----YWIYSVIPKAFHVSGWSAFLPQAIGMLIGAFIFNLFSKKPFFEKKSWKNILTGLIWGIGN 209 (269)
T ss_pred cchhhHHHHHHHHHHH----HHHHHHHHHhcCCChhHhHHHHHHHHHHHHHHHhhcccccccccchHHhhHHHHHHHHHH
Confidence 4556666544333333 3333344333556676666555443333333333322222 2344556788999999999
Q ss_pred HHHHHHhhccchhHHHHhhhhhHHHHHHHHHHHhcccchHHHHH----HHHHHHhhhh
Q 019344 96 FLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLL----GAALCVLGLG 149 (342)
Q Consensus 96 ~~~~~al~~~~~~~~~ii~~~~pi~~~il~~l~l~e~~~~~~~~----g~~l~~~Gv~ 149 (342)
.+++.|.+..+.+.+..+..+..++..+.+.+++||+-+++++. |+++.++|.+
T Consensus 210 l~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~i 267 (269)
T PF06800_consen 210 LFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAI 267 (269)
T ss_pred HHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999998888754 4444445544
No 71
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=97.79 E-value=0.00085 Score=60.32 Aligned_cols=130 Identities=10% Similarity=0.092 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHhhccCC----hHHHHHHHHHHHHHHHHHHHHhhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHH
Q 019344 178 IFFATSNVGEEFFVKKKD----RVEVVCMIGVYGLLVSAVQLSILELKSLESVEWSTNILLGFAGYAASSFMFYTLAPFV 253 (342)
Q Consensus 178 ~~~a~~~v~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (342)
.++..+.+.+++..++.. +..+.+.+.....+...+..........+..++... . .......+...+.+.+
T Consensus 10 ~~~~~~g~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~a 84 (303)
T PF08449_consen 10 GGCCSYGILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFKFPKSRKIPLKKY---A--ILSFLFFLASVLSNAA 84 (303)
T ss_pred HHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhccccCCCcChHHHH---H--HHHHHHHHHHHHHHHH
Confidence 344456677888776633 445666666666665543333333122222222111 1 1222444445667779
Q ss_pred HhhhhhHHHHhHhhhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHhhccCCCCCCC
Q 019344 254 LKLSGATMFNLSLLTADMWAVVFRICFYHQKVDWLYFLAFGIVVIGLIIYSTTEKDLNP 312 (342)
Q Consensus 254 ~~~~~a~~~~~~~~~~pv~~~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~~~~~ 312 (342)
+++.+.....+.....|+..+++++++++++.+..++.+..++.+|+.+....+.++++
T Consensus 85 l~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~ 143 (303)
T PF08449_consen 85 LKYISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSS 143 (303)
T ss_pred HHhCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeeccccccc
Confidence 99999999899999999999999999999999999999999999999999887654443
No 72
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=97.75 E-value=0.0012 Score=49.28 Aligned_cols=72 Identities=15% Similarity=0.179 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccchhHHHHh-hhhhHHHHHHHHHHHhcccchHHHHHHHHHHHhhhhhhe
Q 019344 81 WYWYLLLGFVDVQGNFLVNKAYQFSSITSVTLL-DCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVL 152 (342)
Q Consensus 81 ~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~ii-~~~~pi~~~il~~l~l~e~~~~~~~~g~~l~~~Gv~l~~ 152 (342)
+......-+....++.+...++++.|.+.+..+ ....-+.+.+++.+++||++++.+++++.+.+.|++.+-
T Consensus 35 ~~~~~~~~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~lk 107 (109)
T PRK10650 35 KIYGILSLAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMIK 107 (109)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhc
Confidence 333444444555558888999999999998755 578889999999999999999999999999999998863
No 73
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.74 E-value=0.00083 Score=50.30 Aligned_cols=69 Identities=17% Similarity=0.273 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHHHhhccchhHHHHh-hhhhHHHHHHHHHHHhcccchHHHHHHHHHHHhhhhhheecC
Q 019344 87 LGFVDVQGNFLVNKAYQFSSITSVTLL-DCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSD 155 (342)
Q Consensus 87 ~g~~~~~~~~~~~~al~~~~~~~~~ii-~~~~pi~~~il~~l~l~e~~~~~~~~g~~l~~~Gv~l~~~~~ 155 (342)
.-+.....+.+...++++.|.+.+..+ ....-+.+.+++++++||++++.+++|+.+.++|++.+-..+
T Consensus 36 ~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~~ 105 (110)
T PRK09541 36 TIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 333344447888999999999999876 568999999999999999999999999999999999986644
No 74
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.73 E-value=0.00055 Score=51.27 Aligned_cols=66 Identities=9% Similarity=0.146 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHhhhhhHH-HHhHhhhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHhhccCC
Q 019344 242 SSFMFYTLAPFVLKLSGATM-FNLSLLTADMWAVVFRICFYHQKVDWLYFLAFGIVVIGLIIYSTTE 307 (342)
Q Consensus 242 ~~~~~~~~~~~~~~~~~a~~-~~~~~~~~pv~~~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~ 307 (342)
+....+.++..++++.+... .+...-+..+...+.++++|+|++++.+++|+.++++|+++.+...
T Consensus 39 ~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~~ 105 (110)
T PRK09541 39 CYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 44444566677777766553 3333445668889999999999999999999999999999987644
No 75
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=97.72 E-value=0.00096 Score=48.96 Aligned_cols=72 Identities=21% Similarity=0.165 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhccchhHHHHh-hhhhHHHHHHHHHHHhcccchHHHHHHHHHHHhhhhhheecC
Q 019344 84 YLLLGFVDVQGNFLVNKAYQFSSITSVTLL-DCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSD 155 (342)
Q Consensus 84 ~~~~g~~~~~~~~~~~~al~~~~~~~~~ii-~~~~pi~~~il~~l~l~e~~~~~~~~g~~l~~~Gv~l~~~~~ 155 (342)
.++.-+....++.+...|+++.|.+.+..+ ...-.+.+++.+++++||++++.+++++.+.++|++.+-..+
T Consensus 33 ~il~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~~s 105 (106)
T COG2076 33 SILTIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKLGS 105 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhhcC
Confidence 444444555558888999999999998754 688899999999999999999999999999999999876543
No 76
>PRK11431 multidrug efflux system protein; Provisional
Probab=97.71 E-value=0.00041 Score=51.40 Aligned_cols=71 Identities=20% Similarity=0.084 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhccchhHHHHh-hhhhHHHHHHHHHHHhcccchHHHHHHHHHHHhhhhhheec
Q 019344 84 YLLLGFVDVQGNFLVNKAYQFSSITSVTLL-DCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLS 154 (342)
Q Consensus 84 ~~~~g~~~~~~~~~~~~al~~~~~~~~~ii-~~~~pi~~~il~~l~l~e~~~~~~~~g~~l~~~Gv~l~~~~ 154 (342)
.+..-+....++.+...+++..|.+.+..+ .....+.+.+++.+++||++++.+++++.+.+.|++.+-..
T Consensus 32 ~~~~i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~l~ 103 (105)
T PRK11431 32 SIITVTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLKLS 103 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcc
Confidence 334444445558888999999999998755 46899999999999999999999999999999999987543
No 77
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=97.57 E-value=0.00075 Score=60.26 Aligned_cols=122 Identities=13% Similarity=0.072 Sum_probs=80.2
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhhhcccccccccchhHHHHHHHHHHHH
Q 019344 164 SRPLLGDVLVIAGTIFFATSNVGEEFFVKKKDRVEVVCMIGVYGLLVSAVQLSILELKSLESVEWSTNILLGFAGYAASS 243 (342)
Q Consensus 164 ~~~~~G~~l~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (342)
.+..+|..+++.++++.+....++|+-..+.+....-.-.... -+. .. +.|+. |.. ..
T Consensus 3 ~~~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~~~~~~~~~~~--------~~l------~~--~~W~~-----G~~-~~ 60 (300)
T PF05653_consen 3 TDFYIGVLLAVVSSIFIAVGFNLQKKSHLRLPRGSLRAGSGGR--------SYL------RR--PLWWI-----GLL-LM 60 (300)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhh--------HHH------hh--HHHHH-----HHH-HH
Confidence 5678999999999999999999999876554331100000000 000 00 01111 111 11
Q ss_pred HHHHHHHHHHHhhhhhHHHHhHhhhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHhhccCC
Q 019344 244 FMFYTLAPFVLKLSGATMFNLSLLTADMWAVVFRICFYHQKVDWLYFLAFGIVVIGLIIYSTTE 307 (342)
Q Consensus 244 ~~~~~~~~~~~~~~~a~~~~~~~~~~pv~~~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~ 307 (342)
.....+...++...++..+.....+.-++..+++..+++|+++..++.|+++++.|..+.....
T Consensus 61 ~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~~ 124 (300)
T PF05653_consen 61 VLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIFA 124 (300)
T ss_pred hcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEeC
Confidence 1122333346667777777777777889999999999999999999999999999998776544
No 78
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=97.56 E-value=0.0052 Score=48.17 Aligned_cols=131 Identities=14% Similarity=0.103 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCC-hHHHHHHHHHHHHHHHHHHHHhhhcccccccccchhHHHHHHHHHHHHHHHH
Q 019344 169 GDVLVIAGTIFFATSNVGEEFFVKKKD-RVEVVCMIGVYGLLVSAVQLSILELKSLESVEWSTNILLGFAGYAASSFMFY 247 (342)
Q Consensus 169 G~~l~l~aa~~~a~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (342)
..++++.+...-++...++.++.++.. |.......+..+.+...+.....+..+.+... +. .+..+++-. .+..+.
T Consensus 2 ~~lla~~aG~~i~~q~~~N~~L~~~~gs~~~as~i~~~~G~i~~~i~~~~~~~~~~~~~~-~~-p~w~~lGG~-lG~~~V 78 (138)
T PF04657_consen 2 YILLALLAGALIALQAAFNGQLGKALGSPLVASFISFGVGFILLLIILLITGRPSLASLS-SV-PWWAYLGGL-LGVFFV 78 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhcccccchhc-cC-ChHHhccHH-HHHHHH
Confidence 357889999999999999999988865 88888888888888776555555543322221 11 112222222 233333
Q ss_pred HHHHHHHhhhhhHHHH-hHhhhHHHHHHHHHHH----HhcccccHHHHHHHHHHHHHHHh
Q 019344 248 TLAPFVLKLSGATMFN-LSLLTADMWAVVFRIC----FYHQKVDWLYFLAFGIVVIGLII 302 (342)
Q Consensus 248 ~~~~~~~~~~~a~~~~-~~~~~~pv~~~~~~~~----~~~e~~~~~~~~G~~li~~g~~l 302 (342)
........+.++.... .....+-+.+.++|.+ .-++++++.+++|.+++++|+++
T Consensus 79 ~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 79 LSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 5555566777776544 4444677778888886 23578999999999999999864
No 79
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=97.45 E-value=0.0019 Score=47.48 Aligned_cols=66 Identities=9% Similarity=0.145 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHhhhhhH-HHHhHhhhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHhhccCC
Q 019344 242 SSFMFYTLAPFVLKLSGAT-MFNLSLLTADMWAVVFRICFYHQKVDWLYFLAFGIVVIGLIIYSTTE 307 (342)
Q Consensus 242 ~~~~~~~~~~~~~~~~~a~-~~~~~~~~~pv~~~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~ 307 (342)
+....|.+...++++.+.. ..++..-...+.+.+.++++|+|+.++.+++|..++++|+...+...
T Consensus 39 ~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~~s 105 (106)
T COG2076 39 GYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKLGS 105 (106)
T ss_pred HHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhhcC
Confidence 4444567777788886655 44555556778899999999999999999999999999999877643
No 80
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=97.45 E-value=0.0066 Score=45.28 Aligned_cols=63 Identities=6% Similarity=0.086 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHhhhhhH-HHHhHhhhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHhhc
Q 019344 242 SSFMFYTLAPFVLKLSGAT-MFNLSLLTADMWAVVFRICFYHQKVDWLYFLAFGIVVIGLIIYS 304 (342)
Q Consensus 242 ~~~~~~~~~~~~~~~~~a~-~~~~~~~~~pv~~~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~ 304 (342)
+....+.+...++++.+.. ..++..-+..+.+.+.++++|+|++++.+++|+.+++.|++..+
T Consensus 44 ~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~lk 107 (109)
T PRK10650 44 AVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMIK 107 (109)
T ss_pred HHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhc
Confidence 4444566777788876655 44455556668899999999999999999999999999998764
No 81
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=97.38 E-value=0.093 Score=46.91 Aligned_cols=283 Identities=12% Similarity=0.116 Sum_probs=155.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHh----------hhhhhHHHHHHHHHHHHHH
Q 019344 23 LFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYR----------RQRLRVAWYWYLLLGFVDV 92 (342)
Q Consensus 23 ~~~~~~~al~~~~~~~~~~~~~~~~~~~p~~~~~~r~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~g~~~~ 92 (342)
+++|++...+-+...-+.-...+|-..-+++..+.-..+..-+..|+..-. +...........+.|++..
T Consensus 5 ii~Gii~h~iGg~~~~sfy~P~kkvk~WsWEs~Wlv~gi~swli~P~~~a~l~ip~~~~i~~~~~~~~l~~~~l~G~lWG 84 (344)
T PF06379_consen 5 IILGIIFHAIGGFASGSFYVPFKKVKGWSWESYWLVQGIFSWLIVPWLWALLAIPDFFSIYSATPASTLFWTFLFGVLWG 84 (344)
T ss_pred HHHHHHHHHHHHHHhhhhccchhhcCCccHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHhCChhHHHHHHHHHHHHh
Confidence 444544433333332222223443333355555544444444445544311 1222346677889999999
Q ss_pred HHHHHHHHHhhccchhHHH-HhhhhhHHHHHHHHHHHhcc-------cchHHHHHHHHHHHhhhhhheecCC----C-CC
Q 019344 93 QGNFLVNKAYQFSSITSVT-LLDCCTIAWAIVLTWLFLGT-------RYSLWQLLGAALCVLGLGLVLLSDA----G-GD 159 (342)
Q Consensus 93 ~~~~~~~~al~~~~~~~~~-ii~~~~pi~~~il~~l~l~e-------~~~~~~~~g~~l~~~Gv~l~~~~~~----~-~~ 159 (342)
++...+-.+++|++.+..+ +...+..++-.++--++.++ +-....++|++++++|+.+...... . ..
T Consensus 85 IGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~AG~~Ke~~~~~ 164 (344)
T PF06379_consen 85 IGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKAGSMKEKELGE 164 (344)
T ss_pred cchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHHHHhhhhhhcc
Confidence 9999999999999998875 66677777777776665442 2235679999999999999876432 1 11
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHHHhh--------ccCChHHHH----HHHHHHHHHHHHHHHHhh--hcccc--
Q 019344 160 GGGGSRPLLGDVLVIAGTIFFATSNVGEEFFV--------KKKDRVEVV----CMIGVYGLLVSAVQLSIL--ELKSL-- 223 (342)
Q Consensus 160 ~~~~~~~~~G~~l~l~aa~~~a~~~v~~~~~~--------~~~~~~~~~----~~~~~~~~~~~~~~~~~~--~~~~~-- 223 (342)
+..+.+..+|.++++.+.+..|.+++-.+.-. ...+|.... .....-+.+..++-.... ...+.
T Consensus 165 ~~~efn~~kGl~iAv~sGv~Sa~fn~g~~ag~pi~~~a~a~G~~~l~~~l~~~vvv~~GGf~tN~~yc~~~l~~~k~~s~ 244 (344)
T PF06379_consen 165 EAKEFNFKKGLIIAVLSGVMSACFNFGLDAGKPIHEAAVAAGVNPLYANLPVYVVVLWGGFITNLIYCLILLAKNKNWSW 244 (344)
T ss_pred chhhhhhhhhHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHcCCCcHHHhCchhhhhhhhHHHHHHHHHHHHHhhcCCCcc
Confidence 12334557999999999999999888654311 012222111 111123334443222221 11111
Q ss_pred -ccccc-ch--hHHHHHHH-HHHHHHHHHHHHHHHHhhhhhH----HHHhHhhhHHHHHHHHHHHHhcc------cccHH
Q 019344 224 -ESVEW-ST--NILLGFAG-YAASSFMFYTLAPFVLKLSGAT----MFNLSLLTADMWAVVFRICFYHQ------KVDWL 288 (342)
Q Consensus 224 -~~~~~-~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~----~~~~~~~~~pv~~~~~~~~~~~e------~~~~~ 288 (342)
...+. .. .....+.. ....-+..+.+|..+-.+.++. --.+.+.+..+++-+++.+. +| +.-..
T Consensus 245 ~~d~~~~~~~~~~N~~~~aLaG~lWy~qfffYg~G~s~lg~~~~~~sW~i~ma~~vl~snvwGl~l-kEWKg~s~kt~~v 323 (344)
T PF06379_consen 245 KGDYSVAKPPLLKNYLFCALAGVLWYSQFFFYGMGESKLGASGPFSSWAIHMALIVLFSNVWGLIL-KEWKGASKKTIRV 323 (344)
T ss_pred ccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHHHHHH-HHhccCCcccHHH
Confidence 11110 11 11122211 1224444555555555555533 33345556667777777764 54 23346
Q ss_pred HHHHHHHHHHHHHhhccC
Q 019344 289 YFLAFGIVVIGLIIYSTT 306 (342)
Q Consensus 289 ~~~G~~li~~g~~l~~~~ 306 (342)
.++|.++++.++.+.-+.
T Consensus 324 l~~G~~vlI~s~~ivG~G 341 (344)
T PF06379_consen 324 LVLGIAVLILSVVIVGYG 341 (344)
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 788999988888776543
No 82
>PRK11431 multidrug efflux system protein; Provisional
Probab=97.38 E-value=0.0029 Score=46.87 Aligned_cols=65 Identities=12% Similarity=0.149 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHhhhhhH-HHHhHhhhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHhhccC
Q 019344 242 SSFMFYTLAPFVLKLSGAT-MFNLSLLTADMWAVVFRICFYHQKVDWLYFLAFGIVVIGLIIYSTT 306 (342)
Q Consensus 242 ~~~~~~~~~~~~~~~~~a~-~~~~~~~~~pv~~~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~ 306 (342)
+....+.+...++++.+.. ..++..-+..+.+.+.++++|+|++++.+++|+.+++.|++..+..
T Consensus 38 ~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~l~ 103 (105)
T PRK11431 38 AMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLKLS 103 (105)
T ss_pred HHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcc
Confidence 4444566677777776655 4445555667889999999999999999999999999999887543
No 83
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=97.35 E-value=0.01 Score=46.47 Aligned_cols=124 Identities=18% Similarity=0.177 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHhhh-hh---hHHHHHHHHHHHHHHHHHHHHHHH
Q 019344 26 GQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYRRQ-RL---RVAWYWYLLLGFVDVQGNFLVNKA 101 (342)
Q Consensus 26 ~~~~al~~~~~~~~~~~~~~~~~~~p~~~~~~r~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~g~~~~~~~~~~~~a 101 (342)
+.....+.+........+.++ ..+|+.-+++.+....+.+..+....++ +. ++..+++..-|+++.....+...+
T Consensus 6 a~~aG~~i~~q~~~N~~L~~~-~gs~~~as~i~~~~G~i~~~i~~~~~~~~~~~~~~~~p~w~~lGG~lG~~~V~~~~~~ 84 (138)
T PF04657_consen 6 ALLAGALIALQAAFNGQLGKA-LGSPLVASFISFGVGFILLLIILLITGRPSLASLSSVPWWAYLGGLLGVFFVLSNIIL 84 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-hCccHHHHHHHHHHHHHHHHHHHHHhcccccchhccCChHHhccHHHHHHHHHHHHHH
Confidence 333334444443333333333 3368999989998887666555543332 22 333345566888888888889999
Q ss_pred hhccchhHHHHh-hhhhHHHHHHHHHH----HhcccchHHHHHHHHHHHhhhhh
Q 019344 102 YQFSSITSVTLL-DCCTIAWAIVLTWL----FLGTRYSLWQLLGAALCVLGLGL 150 (342)
Q Consensus 102 l~~~~~~~~~ii-~~~~pi~~~il~~l----~l~e~~~~~~~~g~~l~~~Gv~l 150 (342)
.+..+++.+..+ ..-+-+...++.++ .-|+++++.+.+|+.+.++|+.+
T Consensus 85 vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 85 VPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 999999998755 46666667777775 35788999999999999999864
No 84
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.22 E-value=0.024 Score=44.54 Aligned_cols=139 Identities=10% Similarity=0.041 Sum_probs=82.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhccCC-hHHHHHHHHHHHHHHHHHHHHhhhcccccccccchhHHHHHHHHHHHHH
Q 019344 166 PLLGDVLVIAGTIFFATSNVGEEFFVKKKD-RVEVVCMIGVYGLLVSAVQLSILELKSLESVEWSTNILLGFAGYAASSF 244 (342)
Q Consensus 166 ~~~G~~l~l~aa~~~a~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (342)
.....+.++.+..+-.+..-++.++.+..+ |.......+..|.+...+...+.+.........+...+...-|.. ...
T Consensus 3 ~~l~ll~~i~aG~~l~~Q~~iN~qL~~~~~spl~As~isf~vGt~~L~~l~l~~~~~~~~a~~~~~pwW~~~GG~l-Ga~ 81 (150)
T COG3238 3 MYLYLLFAILAGALLPLQAAINGRLARYLGSPLLASLISFLVGTVLLLILLLIKQGHPGLAAVASAPWWAWIGGLL-GAI 81 (150)
T ss_pred cHHHHHHHHHHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhccCCchHHHHccch-hhh
Confidence 345678889999999999999998877755 655556666676666554444433322222111111122222211 111
Q ss_pred HHHHHHHHHHhhhhhH-HHHhHhhhHHHHHHHHHHHHhc----ccccHHHHHHHHHHHHHHHhhccC
Q 019344 245 MFYTLAPFVLKLSGAT-MFNLSLLTADMWAVVFRICFYH----QKVDWLYFLAFGIVVIGLIIYSTT 306 (342)
Q Consensus 245 ~~~~~~~~~~~~~~a~-~~~~~~~~~pv~~~~~~~~~~~----e~~~~~~~~G~~li~~g~~l~~~~ 306 (342)
. -..-.....+.++. .......-+-+.+.+.|.+=+. .+++...++|.+++++|+++.++.
T Consensus 82 ~-vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~~~ 147 (150)
T COG3238 82 F-VTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLARRF 147 (150)
T ss_pred h-hhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhccc
Confidence 1 12223334444444 4445555677778888877544 678999999999999997666554
No 85
>PRK13499 rhamnose-proton symporter; Provisional
Probab=97.21 E-value=0.011 Score=53.49 Aligned_cols=141 Identities=13% Similarity=0.064 Sum_probs=84.4
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHH-HHHHHHHHHH-HHhhhc---ccccccccchhHHHHHHH
Q 019344 164 SRPLLGDVLVIAGTIFFATSNVGEEFFVKKKDRVEVVCMIG-VYGLLVSAVQ-LSILEL---KSLESVEWSTNILLGFAG 238 (342)
Q Consensus 164 ~~~~~G~~l~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~ 238 (342)
.+...|+++.++++++++...+-.|+ .|+-+ .+...... ++..++.... -.+..+ +...+.+........+.|
T Consensus 3 ~~~~~G~~~~~i~~~~~GS~~~p~K~-~k~w~-wE~~W~v~gi~~wl~~~~~~g~~~~~~f~~~~~~~~~~~~~~~~l~G 80 (345)
T PRK13499 3 NAIILGIIWHLIGGASSGSFYAPFKK-VKKWS-WETMWSVGGIFSWLILPWLIAALLLPDFWAYYSSFSGSTLLPVFLFG 80 (345)
T ss_pred chhHHHHHHHHHHHHHhhcccccccc-cCCCc-hhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhcCHHHHHHHHHHH
Confidence 35678999999999999999998888 44433 22221111 2222221100 111111 111222222222223223
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHH-HhHhhhHHHHHHHHHHHHhcccc---c----HHHHHHHHHHHHHHHhhccCCC
Q 019344 239 YAASSFMFYTLAPFVLKLSGATMF-NLSLLTADMWAVVFRICFYHQKV---D----WLYFLAFGIVVIGLIIYSTTEK 308 (342)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~a~~~-~~~~~~~pv~~~~~~~~~~~e~~---~----~~~~~G~~li~~g~~l~~~~~~ 308 (342)
. .-...+..+..++++.+.... ++..-++-+.+.+++.+++||.. + ..-++|.+++++|+.+..+.-.
T Consensus 81 ~--~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~Ag~ 156 (345)
T PRK13499 81 A--LWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRAGQ 156 (345)
T ss_pred H--HHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHhhh
Confidence 2 344456777778888777644 34444777999999999999765 2 3578899999999999998543
No 86
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=97.15 E-value=0.003 Score=54.53 Aligned_cols=132 Identities=17% Similarity=0.121 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhhhcccccccccchhHHHHHHHHHHHHHHHHH
Q 019344 169 GDVLVIAGTIFFATSNVGEEFFVKKKDRVEVVCMIGVYGLLVSAVQLSILELKSLESVEWSTNILLGFAGYAASSFMFYT 248 (342)
Q Consensus 169 G~~l~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (342)
|.+.++.|+++++-..+=.|+. +..|......+++....+...+.....+. +.+.+.. ++-|. ....++.
T Consensus 1 G~~a~~va~~~fGs~~vPvK~~-~~gDg~~fQw~~~~~i~~~g~~v~~~~~~---p~f~p~a----mlgG~--lW~~gN~ 70 (254)
T PF07857_consen 1 GYIACIVAVLFFGSNFVPVKKF-DTGDGFFFQWVMCSGIFLVGLVVNLILGF---PPFYPWA----MLGGA--LWATGNI 70 (254)
T ss_pred CchhHHHHHHHhcccceeeEec-cCCCcHHHHHHHHHHHHHHHHHHHHhcCC---CcceeHH----Hhhhh--hhhcCce
Confidence 5677889999999988877765 34566666666654444444333333222 2221111 11111 1111122
Q ss_pred HHHHHHhhhhhHHHHh-HhhhHHHHHHHHHHH-Hhcccc-----cHHHHHHHHHHHHHHHhhccCCCCC
Q 019344 249 LAPFVLKLSGATMFNL-SLLTADMWAVVFRIC-FYHQKV-----DWLYFLAFGIVVIGLIIYSTTEKDL 310 (342)
Q Consensus 249 ~~~~~~~~~~a~~~~~-~~~~~pv~~~~~~~~-~~~e~~-----~~~~~~G~~li~~g~~l~~~~~~~~ 310 (342)
+..-+++..+-...-+ ....+-+.+...+-+ +||+++ ++..++|.+++++|..++..-|.+.
T Consensus 71 ~~vpii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~fik~~~ 139 (254)
T PF07857_consen 71 LVVPIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSFIKSEE 139 (254)
T ss_pred eehhHhhhhhhHHHHHHHHHHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHheeeecCCC
Confidence 2223444444443322 222333445554433 455433 4579999999999999887755444
No 87
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=97.15 E-value=0.0019 Score=46.93 Aligned_cols=55 Identities=16% Similarity=0.148 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHhhccchhHHHHh-hhhhHHHHHHHHHHHhcccchHHHHHHHHHH
Q 019344 90 VDVQGNFLVNKAYQFSSITSVTLL-DCCTIAWAIVLTWLFLGTRYSLWQLLGAALC 144 (342)
Q Consensus 90 ~~~~~~~~~~~al~~~~~~~~~ii-~~~~pi~~~il~~l~l~e~~~~~~~~g~~l~ 144 (342)
.......++..++++.|.+.+..+ ..+..+.+.+.+.+++||++++.++.|+.+.
T Consensus 38 ~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 38 GYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence 444457889999999999999765 4799999999999999999999999998763
No 88
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=97.08 E-value=0.0059 Score=52.91 Aligned_cols=69 Identities=12% Similarity=0.218 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHhHhhhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHhhccCCCCC
Q 019344 242 SSFMFYTLAPFVLKLSGATMFNLSLLTADMWAVVFRICFYHQKVDWLYFLAFGIVVIGLIIYSTTEKDL 310 (342)
Q Consensus 242 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~pv~~~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~~~ 310 (342)
.....+.+.+.++++.++....+...++.+++.++++++++.+++..||.+..++.+|+.+.+......
T Consensus 26 lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~~ 94 (244)
T PF04142_consen 26 LYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQS 94 (244)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCccc
Confidence 344445666678999999999999999999999999999999999999999999999999988866444
No 89
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=96.72 E-value=0.0053 Score=45.89 Aligned_cols=68 Identities=18% Similarity=0.298 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhccchhHHHHh-hhhhHHHHHHHHHHHhcccchHHHHHHHHHHHhhhhhh
Q 019344 84 YLLLGFVDVQGNFLVNKAYQFSSITSVTLL-DCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLV 151 (342)
Q Consensus 84 ~~~~g~~~~~~~~~~~~al~~~~~~~~~ii-~~~~pi~~~il~~l~l~e~~~~~~~~g~~l~~~Gv~l~ 151 (342)
+.+-=.++..+...+++.+...+.+.+..+ +++.=++|++.++++.+|..+++.++|+.+.+.|+.+.
T Consensus 44 y~ipf~lNq~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lc 112 (113)
T PF10639_consen 44 YIIPFLLNQSGSVLFFLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVALC 112 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeeee
Confidence 344445566668999999999999999877 59999999999988777778889999999999998764
No 90
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=96.56 E-value=0.033 Score=47.54 Aligned_cols=67 Identities=18% Similarity=0.298 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhccchhHHHHhhhhhHHHHHHHHHHHhcccchHHHHHHHHHHHhhhhh
Q 019344 84 YLLLGFVDVQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGL 150 (342)
Q Consensus 84 ~~~~g~~~~~~~~~~~~al~~~~~~~~~ii~~~~pi~~~il~~l~l~e~~~~~~~~g~~l~~~Gv~l 150 (342)
.....+.......+....++|.+....++...+.++++.+++.++++|+++..+++|..+.+.|+.+
T Consensus 155 ~~~~~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~l 221 (222)
T TIGR00803 155 VWIVGLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFL 221 (222)
T ss_pred HHHHHHHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEe
Confidence 4444555666677889999999999999999999999999999999999999999999999988754
No 91
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=96.51 E-value=0.0026 Score=54.25 Aligned_cols=80 Identities=20% Similarity=0.381 Sum_probs=72.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHhhhhhHHHHHHHHHHHhcccchHHHHHHHHHHHhhhhhheec
Q 019344 75 QRLRVAWYWYLLLGFVDVQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLS 154 (342)
Q Consensus 75 ~~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~ii~~~~pi~~~il~~l~l~e~~~~~~~~g~~l~~~Gv~l~~~~ 154 (342)
+..+++|+.+..+|+.+++++.+...++|.-.++-.+++.++.-++..+.-.+++++.++++.|.|.++.+...+.+...
T Consensus 247 P~cgkdr~l~~~lGvfgfigQIllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v~~a~~ 326 (346)
T KOG4510|consen 247 PHCGKDRWLFVNLGVFGFIGQILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTVWVALK 326 (346)
T ss_pred CccccceEEEEEehhhhhHHHHHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeehhHHHHHHH
Confidence 34477888899999999999999999999999999999999999999999999999999999999998887776666553
No 92
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=96.40 E-value=0.054 Score=39.30 Aligned_cols=55 Identities=9% Similarity=0.130 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHhhhhhHHH-HhHhhhHHHHHHHHHHHHhcccccHHHHHHHHHH
Q 019344 242 SSFMFYTLAPFVLKLSGATMF-NLSLLTADMWAVVFRICFYHQKVDWLYFLAFGIV 296 (342)
Q Consensus 242 ~~~~~~~~~~~~~~~~~a~~~-~~~~~~~pv~~~~~~~~~~~e~~~~~~~~G~~li 296 (342)
+....+.++..++++.+...+ ++..-+..+...+.+.++|||++++.++.|..+|
T Consensus 38 ~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 38 GYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence 444555777888888776644 4444567789999999999999999999999876
No 93
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=96.16 E-value=0.021 Score=51.05 Aligned_cols=136 Identities=16% Similarity=0.146 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHHHHH-HHHHHhhh---------hhhHHHHHHHHH
Q 019344 20 LYLLFLGQLVSFTLALMSFTSSLIAD--LGVDAPVTQSAFAYFSLALVYG-GVLLYRRQ---------RLRVAWYWYLLL 87 (342)
Q Consensus 20 ~~~~~~~~~~al~~~~~~~~~~~~~~--~~~~~p~~~~~~r~~~~~~~~~-~~~~~~~~---------~~~~~~~~~~~~ 87 (342)
+.|+..+....+..+.-....+.+.. +...+++.......-.+...++ |+...... ...-........
T Consensus 162 ~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (316)
T KOG1441|consen 162 LFGFISAMISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVTFLILLLN 241 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccchhhHHHHHH
Confidence 44565555555555554444444443 2345577777665566666666 76553221 111223344555
Q ss_pred HHHHHHHHHHHHHHhhccchhHHHHhhhhhHHHHHHHHHHHhcccchHHHHHHHHHHHhhhhhheecC
Q 019344 88 GFVDVQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSD 155 (342)
Q Consensus 88 g~~~~~~~~~~~~al~~~~~~~~~ii~~~~pi~~~il~~l~l~e~~~~~~~~g~~l~~~Gv~l~~~~~ 155 (342)
+++....|...|..++++++-..++.....=+++...++++++++.++.+..|..++++|+.+-..-.
T Consensus 242 sv~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~~k 309 (316)
T KOG1441|consen 242 SVLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSRAK 309 (316)
T ss_pred HHHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHHHh
Confidence 56666668899999999999999999999999999999999999999999999999999999876644
No 94
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=95.98 E-value=0.084 Score=47.55 Aligned_cols=140 Identities=19% Similarity=0.156 Sum_probs=101.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCc-hHHHHHHHHHHHHHHHHHHHH----Hhhhh--h--hHHHHHH
Q 019344 16 TLRTLYLLFLGQLVSFTLALMSFTSSLIADLG--VDA-PVTQSAFAYFSLALVYGGVLL----YRRQR--L--RVAWYWY 84 (342)
Q Consensus 16 ~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~--~~~-p~~~~~~r~~~~~~~~~~~~~----~~~~~--~--~~~~~~~ 84 (342)
..|.+.|-+++++.|++.++.....+.-..+. ..+ +.++- +--++..+++||.++ .++++ + ..+.-..
T Consensus 242 a~~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffG-fvGLfnllllwP~l~iL~~~~~e~F~lP~~~q~~~v 320 (416)
T KOG2765|consen 242 ASRPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFG-FVGLFNLLLLWPPLIILDFFGEERFELPSSTQFSLV 320 (416)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHH-HHHHHHHHHHhHHHHHHHHhccCcccCCCCceeEee
Confidence 35678888888888888888777766555432 222 33333 223444666665543 22222 1 2344456
Q ss_pred HHHHHHHHHH-HHHHHHHhhccchhHHHHhhhhhHHHHHHHHHHHhcccchHHHHHHHHHHHhhhhhheecCC
Q 019344 85 LLLGFVDVQG-NFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDA 156 (342)
Q Consensus 85 ~~~g~~~~~~-~~~~~~al~~~~~~~~~ii~~~~pi~~~il~~l~l~e~~~~~~~~g~~l~~~Gv~l~~~~~~ 156 (342)
++.++++.+. .+++..|.-.+++-.+++-.+++....++.-.++.++++++..++|.+..++|.+++...+.
T Consensus 321 v~~~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~~ 393 (416)
T KOG2765|consen 321 VFNNLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNISSE 393 (416)
T ss_pred eHhhHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheecccc
Confidence 7777777777 99999999999999999888888887888888888899999999999999999999988764
No 95
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=95.51 E-value=0.26 Score=43.25 Aligned_cols=137 Identities=14% Similarity=0.041 Sum_probs=92.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHhh---------hhhhHHHHHHHHHH
Q 019344 18 RTLYLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYRR---------QRLRVAWYWYLLLG 88 (342)
Q Consensus 18 ~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~p~~~~~~r~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~g 88 (342)
+...|+.+...-.++=+.....=..++.+...+++.+.+.--++..+.-........ +..++.++.+++.+
T Consensus 169 ns~~G~~Ll~~~L~fDgfTn~tQd~lf~~~k~s~~~mM~~vNLf~~i~~~~~li~qg~~~~av~F~~~hp~~~~Di~l~s 248 (327)
T KOG1581|consen 169 NSPIGILLLFGYLLFDGFTNATQDSLFKKYKVSSLHMMFGVNLFSAILNGTYLILQGHLLPAVSFIKEHPDVAFDILLYS 248 (327)
T ss_pred CchHhHHHHHHHHHHHhhHHhHHHHHhccCCccHhHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHcChhHHHHHHHHH
Confidence 344454443333222233333333455554555666665555555544444333111 12256778899999
Q ss_pred HHHHHHHHHHHHHhhccchhHHHHhhhhhHHHHHHHHHHHhcccchHHHHHHHHHHHhhhhhheec
Q 019344 89 FVDVQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLS 154 (342)
Q Consensus 89 ~~~~~~~~~~~~al~~~~~~~~~ii~~~~pi~~~il~~l~l~e~~~~~~~~g~~l~~~Gv~l~~~~ 154 (342)
.++..++.+.++-++.-++-.-+.+..+-=++..+++.+.++.++++.||+|+.+.+.|+.+=...
T Consensus 249 ~~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l~~~~ 314 (327)
T KOG1581|consen 249 TCGAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFLEILL 314 (327)
T ss_pred HhhhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHHHHHH
Confidence 999999888888888777777777788888999999999999999999999999999998875543
No 96
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=95.49 E-value=0.1 Score=39.09 Aligned_cols=109 Identities=9% Similarity=0.077 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 019344 175 AGTIFFATSNVGEEFFVKKKDRVEVVCMIGVYGLLVSAVQLSILELKSLESVEWSTNILLGFAGYAASSFMFYTLAPFVL 254 (342)
Q Consensus 175 ~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (342)
+.++.|+..+-+.|+-.++.++..-.. +..-.... .+. ++...+.+.....++.. ++..+
T Consensus 3 ~Vg~~WG~Tnpfik~g~~~~~~~~~~~-~~~~~~~~-----Ll~----------n~~y~ipf~lNq~GSv~----f~~~L 62 (113)
T PF10639_consen 3 LVGILWGCTNPFIKRGSSGLEKVKASL-QLLQEIKF-----LLL----------NPKYIIPFLLNQSGSVL----FFLLL 62 (113)
T ss_pred eehHHhcCchHHHHHHHhhcCCccchH-HHHHHHHH-----HHH----------hHHHHHHHHHHHHHHHH----HHHHH
Confidence 456788999999998876644333221 11111111 001 11122222222213333 33345
Q ss_pred hhhhhH-HHHhHhhhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHhh
Q 019344 255 KLSGAT-MFNLSLLTADMWAVVFRICFYHQKVDWLYFLAFGIVVIGLIIY 303 (342)
Q Consensus 255 ~~~~a~-~~~~~~~~~pv~~~~~~~~~~~e~~~~~~~~G~~li~~g~~l~ 303 (342)
.+.+-+ .+.+.+.+.=+++++.++++.+|..+...++|+.+++.|+.+.
T Consensus 63 ~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lc 112 (113)
T PF10639_consen 63 GSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVALC 112 (113)
T ss_pred hcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeeee
Confidence 554433 3344455666999999998888888999999999999998753
No 97
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=95.39 E-value=0.0081 Score=50.73 Aligned_cols=132 Identities=12% Similarity=0.095 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhhhcccccccccchhHHHHHHHHHHHHHHHHH
Q 019344 169 GDVLVIAGTIFFATSNVGEEFFVKKKDRVEVVCMIGVYGLLVSAVQLSILELKSLESVEWSTNILLGFAGYAASSFMFYT 248 (342)
Q Consensus 169 G~~l~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (342)
+.+++++=++.|+..-....|. +.+|..-.....+-+.+++. ..+.+.. +..++.... ..+.+-. .....+.
T Consensus 3 ~~liaL~P~l~WGsip~v~~k~--GG~p~qQ~lGtT~GALifai-iv~~~~~---p~~T~~~~i-v~~isG~-~Ws~GQ~ 74 (288)
T COG4975 3 DLLIALLPALGWGSIPLVANKF--GGKPYQQTLGTTLGALIFAI-IVFLFVS---PELTLTIFI-VGFISGA-FWSFGQA 74 (288)
T ss_pred hHHHHHHHHHHhcccceeeeec--CCChhHhhhhccHHHHHHHH-HHheeec---CccchhhHH-HHHHhhh-Hhhhhhh
Confidence 4678889999999887766663 23344433333244444443 3333322 222222222 2222222 3333456
Q ss_pred HHHHHHhhhhhHHHH-hHhhhHHHHHHHHHHHHhcccccHHHH----HHHHHHHHHHHhhccCCC
Q 019344 249 LAPFVLKLSGATMFN-LSLLTADMWAVVFRICFYHQKVDWLYF----LAFGIVVIGLIIYSTTEK 308 (342)
Q Consensus 249 ~~~~~~~~~~a~~~~-~~~~~~pv~~~~~~~~~~~e~~~~~~~----~G~~li~~g~~l~~~~~~ 308 (342)
...++.+..+...+. +..-.+-+-+.+++++.|||..+..++ +..++++.|+++..+.++
T Consensus 75 ~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~ 139 (288)
T COG4975 75 NQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDR 139 (288)
T ss_pred hhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeecc
Confidence 677788887776544 444477788999999999999998764 466788889988877654
No 98
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=95.31 E-value=0.061 Score=45.23 Aligned_cols=76 Identities=16% Similarity=0.225 Sum_probs=68.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHhhhhhHHHHHHHHHHHhcccchHHHHHHHHHHHhhhhhhee
Q 019344 78 RVAWYWYLLLGFVDVQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLL 153 (342)
Q Consensus 78 ~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~ii~~~~pi~~~il~~l~l~e~~~~~~~~g~~l~~~Gv~l~~~ 153 (342)
+..|+.+.++++.+..++++.+.-..+-++-.-+++..+--.|+.+.++++++.+++.+||+|..+.+.|...=..
T Consensus 238 P~~~~~l~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~D~~ 313 (337)
T KOG1580|consen 238 PYVFWDLTLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTADVV 313 (337)
T ss_pred cHHHHHHHHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhHhh
Confidence 4577888999999999999999999999998899999999999999999999999999999999999988776444
No 99
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.06 E-value=1.3 Score=34.91 Aligned_cols=129 Identities=16% Similarity=0.159 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHhhhh--h---hHHHHHHHHHHHHHHHHHHH
Q 019344 23 LFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYRRQR--L---RVAWYWYLLLGFVDVQGNFL 97 (342)
Q Consensus 23 ~~~~~~~al~~~~~~~~~~~~~~~~~~~p~~~~~~r~~~~~~~~~~~~~~~~~~--~---~~~~~~~~~~g~~~~~~~~~ 97 (342)
++++.....+...-.....-+.+ ...+|..-.+..+.....++..+.+.+.++ . ++..++...-|+++...-+.
T Consensus 7 ll~~i~aG~~l~~Q~~iN~qL~~-~~~spl~As~isf~vGt~~L~~l~l~~~~~~~~a~~~~~pwW~~~GG~lGa~~vt~ 85 (150)
T COG3238 7 LLFAILAGALLPLQAAINGRLAR-YLGSPLLASLISFLVGTVLLLILLLIKQGHPGLAAVASAPWWAWIGGLLGAIFVTS 85 (150)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHH-HcCChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhccCCchHHHHccchhhhhhhh
Confidence 34444444444444433333333 345788888888888766555554433222 1 23345566777777777667
Q ss_pred HHHHhhccchhHHH-HhhhhhHHHHHHHHHHHh----cccchHHHHHHHHHHHhhhhhhe
Q 019344 98 VNKAYQFSSITSVT-LLDCCTIAWAIVLTWLFL----GTRYSLWQLLGAALCVLGLGLVL 152 (342)
Q Consensus 98 ~~~al~~~~~~~~~-ii~~~~pi~~~il~~l~l----~e~~~~~~~~g~~l~~~Gv~l~~ 152 (342)
........+++... ++..-+-+...++-.+=. +++++..+.+|+.+.++|++++-
T Consensus 86 s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~ 145 (150)
T COG3238 86 SILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLAR 145 (150)
T ss_pred hHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhc
Confidence 77777888777765 445667776777666533 36789999999999999955443
No 100
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=93.95 E-value=1.4 Score=39.57 Aligned_cols=145 Identities=13% Similarity=0.101 Sum_probs=77.6
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhhhcccc----cccccchhHHHHHHHH
Q 019344 164 SRPLLGDVLVIAGTIFFATSNVGEEFFVKKKDRVEVVCMIGVYGLLVSAVQLSILELKSL----ESVEWSTNILLGFAGY 239 (342)
Q Consensus 164 ~~~~~G~~l~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 239 (342)
..-..|+++..+++++.+.+.+-.||. |+-+=..+=..+.+++.++.........-++. .+.+.+......+.+.
T Consensus 3 ~~ii~Gii~h~iGg~~~~sfy~P~kkv-k~WsWEs~Wlv~gi~swli~P~~~a~l~ip~~~~i~~~~~~~~l~~~~l~G~ 81 (344)
T PF06379_consen 3 SAIILGIIFHAIGGFASGSFYVPFKKV-KGWSWESYWLVQGIFSWLIVPWLWALLAIPDFFSIYSATPASTLFWTFLFGV 81 (344)
T ss_pred chHHHHHHHHHHHHHHhhhhccchhhc-CCccHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHhCChhHHHHHHHHHH
Confidence 455789999999999999998888774 44332222222334444443211222222222 1222222222333333
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHH-hHhhhHHHHHHHHHHHHhc-------ccccHHHHHHHHHHHHHHHhhccCCCCCC
Q 019344 240 AASSFMFYTLAPFVLKLSGATMFN-LSLLTADMWAVVFRICFYH-------QKVDWLYFLAFGIVVIGLIIYSTTEKDLN 311 (342)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~pv~~~~~~~~~~~-------e~~~~~~~~G~~li~~g~~l~~~~~~~~~ 311 (342)
. -...-..+-.++++.+..... +..=+..+++.++--++.+ ++-....++|.++.++|+.+..+.-.+|+
T Consensus 82 l--WGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~AG~~Ke 159 (344)
T PF06379_consen 82 L--WGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKAGSMKE 159 (344)
T ss_pred H--HhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHHHHhhh
Confidence 2 222235556677776665332 2222333555555444433 23345789999999999999887654433
No 101
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.73 E-value=0.054 Score=47.75 Aligned_cols=130 Identities=15% Similarity=0.110 Sum_probs=84.3
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhhhcccccccccchhHHHHHHHHHH
Q 019344 162 GGSRPLLGDVLVIAGTIFFATSNVGEEFFVKKKDRVEVVCMIGVYGLLVSAVQLSILELKSLESVEWSTNILLGFAGYAA 241 (342)
Q Consensus 162 ~~~~~~~G~~l~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (342)
...++.+|..+++.+.+..+...++.|+..++......-+-..-. ..+.+ +.||. |..
T Consensus 15 ~~~d~~~G~~LaissS~~Ig~sfilkKkgl~r~~~~~~ra~~gg~--------------~yl~~--~~Ww~-----G~l- 72 (335)
T KOG2922|consen 15 MSSDNIIGLVLAISSSIFIGSSFILKKKGLKRAGASGLRAGEGGY--------------GYLKE--PLWWA-----GML- 72 (335)
T ss_pred hccCceeeeeehhhccEEEeeehhhhHHHHHHHhhhcccccCCCc--------------chhhh--HHHHH-----HHH-
Confidence 346788999999999999999999888866553221100000000 00011 11222 111
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHhHhhhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHhhccCCCCCCCC
Q 019344 242 SSFMFYTLAPFVLKLSGATMFNLSLLTADMWAVVFRICFYHQKVDWLYFLAFGIVVIGLIIYSTTEKDLNPM 313 (342)
Q Consensus 242 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~pv~~~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~~~~~~ 313 (342)
.+..+-...+.+....++..++....+..+++.+++..+++|++++...+|+++.++|..+......++++.
T Consensus 73 tm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~haP~e~~i 144 (335)
T KOG2922|consen 73 TMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHAPKEQEI 144 (335)
T ss_pred HHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEecCccccc
Confidence 222222333334556677777777778889999999999999999999999999999998887765555443
No 102
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.72 E-value=0.099 Score=45.08 Aligned_cols=137 Identities=15% Similarity=0.124 Sum_probs=91.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHhh--------hhh--hHHHHHHHH
Q 019344 17 LRTLYLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYRR--------QRL--RVAWYWYLL 86 (342)
Q Consensus 17 ~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~p~~~~~~r~~~~~~~~~~~~~~~~--------~~~--~~~~~~~~~ 86 (342)
.--+.|+++|...++..+......+....+-.+.-+.++++....+.++++|.+.... +.. ...|..+.+
T Consensus 181 ~ls~~GvifGVlaSl~vAlnaiytkk~l~~v~~~iw~lt~ynnv~a~lLflpll~lnge~~~v~~~~~l~a~~Fw~~mtL 260 (347)
T KOG1442|consen 181 TLSWIGVIFGVLASLAVALNAIYTKKVLPPVGDCIWRLTAYNNVNALLLFLPLLILNGEFQAVVGFPHLPAIKFWILMTL 260 (347)
T ss_pred ccchhhhHHHHHHHHHHHHHHHhhheecccccCeehhhHHHHHHHHHHHHHHHHHHcchHHHHcCcccchHHHHHHHHHH
Confidence 3457799999888877766665555333322334577888888888888888776322 111 235566677
Q ss_pred HHHHHHHHHHHHHHHhhccchhHHHHhhhhhHHHHHHHHHHHhcccchHHHHHHHHHHHhhhhhhee
Q 019344 87 LGFVDVQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLL 153 (342)
Q Consensus 87 ~g~~~~~~~~~~~~al~~~~~~~~~ii~~~~pi~~~il~~l~l~e~~~~~~~~g~~l~~~Gv~l~~~ 153 (342)
.|++++..++...+=++.+++-.-.+=.......-.+++..+++|..+...|-+.++.+.|...-+.
T Consensus 261 sglfgF~mgyvTg~QIK~TSplThnISgTAka~aQTvlAv~~y~E~ks~lwwtsn~~vLvgs~~YT~ 327 (347)
T KOG1442|consen 261 SGLFGFAMGYVTGWQIKVTSPLTHNISGTAKAAAQTVLAVAYYSETKSGLWWTSNIVVLVGSLAYTL 327 (347)
T ss_pred HHHHHHHhhheeeEEEEecccceeeecHhHHHHHHHHHHHHHHHHHhhhheeeeeEEEEehhHHHHH
Confidence 7777777765555555555554444433444555668899999999999999888888888777665
No 103
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=93.24 E-value=6.2 Score=35.67 Aligned_cols=61 Identities=13% Similarity=0.239 Sum_probs=54.9
Q ss_pred HHHHHHHhhhhhHHHHhHhhhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHhhccCCC
Q 019344 248 TLAPFVLKLSGATMFNLSLLTADMWAVVFRICFYHQKVDWLYFLAFGIVVIGLIIYSTTEK 308 (342)
Q Consensus 248 ~~~~~~~~~~~a~~~~~~~~~~pv~~~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~ 308 (342)
-+.+.+..+.++........+..+.+.++..++++++++..||...++...|+.+.+....
T Consensus 107 nl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~ 167 (345)
T KOG2234|consen 107 NLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPSL 167 (345)
T ss_pred hHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCC
Confidence 3566688899999999999999999999999999999999999999999999999995443
No 104
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=93.20 E-value=2.9 Score=36.34 Aligned_cols=75 Identities=16% Similarity=0.140 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHhhhhhHHHHH-HHHHH-Hhccc-----chHHHHHHHHHHHhhhhhh
Q 019344 79 VAWYWYLLLGFVDVQGNFLVNKAYQFSSITSVTLLDCCTIAWAI-VLTWL-FLGTR-----YSLWQLLGAALCVLGLGLV 151 (342)
Q Consensus 79 ~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~ii~~~~pi~~~-il~~l-~l~e~-----~~~~~~~g~~l~~~Gv~l~ 151 (342)
+-..+-++.|.+...+|.+..-.++.++.+....+.++.-+.+- ..+++ +++++ -++..++|++++++|..+.
T Consensus 53 ~f~p~amlgG~lW~~gN~~~vpii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f 132 (254)
T PF07857_consen 53 PFYPWAMLGGALWATGNILVVPIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIF 132 (254)
T ss_pred cceeHHHhhhhhhhcCceeehhHhhhhhhHHHHHHHHHHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHhe
Confidence 34556677888888889999999999999999998877555554 44443 33332 3577899999999999987
Q ss_pred ee
Q 019344 152 LL 153 (342)
Q Consensus 152 ~~ 153 (342)
..
T Consensus 133 ~f 134 (254)
T PF07857_consen 133 SF 134 (254)
T ss_pred ee
Confidence 76
No 105
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.25 E-value=1.8 Score=38.49 Aligned_cols=76 Identities=13% Similarity=0.106 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHhhhhhHHHHHHHHHHHhcccchHHHHHHHHHHHhhhhhheecC
Q 019344 80 AWYWYLLLGFVDVQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSD 155 (342)
Q Consensus 80 ~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~ii~~~~pi~~~il~~l~l~e~~~~~~~~g~~l~~~Gv~l~~~~~ 155 (342)
.+-.+.+.++++++.+++.+++.+..++...++.....-..+.+...++.+++.++...+|+.++++|-++-....
T Consensus 227 ~~~~~~lScv~gf~isy~s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~~~ 302 (314)
T KOG1444|consen 227 VLVVMLLSCVMGFGISYTSFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSYAT 302 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccceeehhhhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHhhhh
Confidence 3566788888888889999999999999999988877777788888888889999999999999999998877654
No 106
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=90.45 E-value=9.8 Score=33.78 Aligned_cols=130 Identities=16% Similarity=0.129 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC---CCchHHHHHHHHHHHHHHHHHHHH-Hhh------------hhhhHHHHHH-
Q 019344 22 LLFLGQLVSFTLALMSFTSSLIADLG---VDAPVTQSAFAYFSLALVYGGVLL-YRR------------QRLRVAWYWY- 84 (342)
Q Consensus 22 ~~~~~~~~al~~~~~~~~~~~~~~~~---~~~p~~~~~~r~~~~~~~~~~~~~-~~~------------~~~~~~~~~~- 84 (342)
|.++-...+++.+.=+...+.+.++. ..+|....+.---...+.+++..+ ..+ ......++..
T Consensus 165 Gf~lv~~aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~~s~~f~~~d~~~~~rv~g 244 (349)
T KOG1443|consen 165 GFFLVLAASLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLFEGLHLITSSSIFRFQDTGLILRVIG 244 (349)
T ss_pred hHHHHHHHHHhhhhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHHHHHHHHHHcccccchhhhHHHhcCccHHHHHHH
Confidence 45555555565555555566776653 244665553333333333333332 111 1111122322
Q ss_pred --HHHHHHHHHHHHHHHHHhhccchhHHHHhhhhhHHHHHHHHHHHhcccchHHHHHHHHHHHhhhhhh
Q 019344 85 --LLLGFVDVQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLV 151 (342)
Q Consensus 85 --~~~g~~~~~~~~~~~~al~~~~~~~~~ii~~~~pi~~~il~~l~l~e~~~~~~~~g~~l~~~Gv~l~ 151 (342)
.+.|.+.+..-..-+.=+..++.-..++..-..-+.+.+++..+++++++...|.|..++..|+..-
T Consensus 245 ~i~l~g~laF~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~ 313 (349)
T KOG1443|consen 245 LISLGGLLAFLLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLH 313 (349)
T ss_pred HHHHHHHHHHHHHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHh
Confidence 2333333333333355556666666677777778889999999999999999999999999999987
No 107
>PRK02237 hypothetical protein; Provisional
Probab=89.41 E-value=4.3 Score=29.90 Aligned_cols=41 Identities=7% Similarity=0.115 Sum_probs=35.8
Q ss_pred hHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHhhccCCC
Q 019344 268 TADMWAVVFRICFYHQKVDWLYFLAFGIVVIGLIIYSTTEK 308 (342)
Q Consensus 268 ~~pv~~~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~ 308 (342)
+-.+.++++.+.+-|++|+...++|..++++|+.+..+.+|
T Consensus 68 vyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~~pR 108 (109)
T PRK02237 68 VYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMYAPR 108 (109)
T ss_pred HHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHheecCC
Confidence 34478889999999999999999999999999988876654
No 108
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=89.17 E-value=0.44 Score=39.07 Aligned_cols=62 Identities=13% Similarity=0.129 Sum_probs=54.9
Q ss_pred HHHHHHHHhhhhhHHHHhHhhhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHhhccCCC
Q 019344 247 YTLAPFVLKLSGATMFNLSLLTADMWAVVFRICFYHQKVDWLYFLAFGIVVIGLIIYSTTEK 308 (342)
Q Consensus 247 ~~~~~~~~~~~~a~~~~~~~~~~pv~~~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~ 308 (342)
...|..++++.+++.++.....+..+..+++++.+++++....+...++.+.|+++..+.+.
T Consensus 67 NY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN 128 (290)
T KOG4314|consen 67 NYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADN 128 (290)
T ss_pred CcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccc
Confidence 45566788999999888888888899999999999999999999999999999999987653
No 109
>PRK02237 hypothetical protein; Provisional
Probab=88.51 E-value=8.2 Score=28.49 Aligned_cols=51 Identities=22% Similarity=0.541 Sum_probs=39.1
Q ss_pred cchhHHHHhh-hhhHHHHHHHHHHHhcccchHHHHHHHHHHHhhhhhheecC
Q 019344 105 SSITSVTLLD-CCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSD 155 (342)
Q Consensus 105 ~~~~~~~ii~-~~~pi~~~il~~l~l~e~~~~~~~~g~~l~~~Gv~l~~~~~ 155 (342)
.+.+.+.... ....+...+..+.+-|+|+++.+++|..++++|+.++.+..
T Consensus 56 ~~~GRvYAAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~~p 107 (109)
T PRK02237 56 AAFGRVYAAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMYAP 107 (109)
T ss_pred hhhhhHHHHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHheecC
Confidence 3455554433 55555666888888999999999999999999999887654
No 110
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=88.36 E-value=6.6 Score=34.21 Aligned_cols=106 Identities=13% Similarity=0.153 Sum_probs=72.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHH------hh----hhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHhhhhhHH
Q 019344 50 APVTQSAFAYFSLALVYGGVLLY------RR----QRLRVAWYWYLLLGFVDVQGNFLVNKAYQFSSITSVTLLDCCTIA 119 (342)
Q Consensus 50 ~p~~~~~~r~~~~~~~~~~~~~~------~~----~~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~ii~~~~pi 119 (342)
+..+++++.+.+..++++....- .+ +.+.+.....++.++.+..+......=.+.-++..+..+...--.
T Consensus 219 ss~EmvfySy~iG~vflf~~mvlTge~f~a~~fcaehp~~tyGy~~~~s~~gylG~~~VLalI~~fGA~~aatvTTaRKa 298 (367)
T KOG1582|consen 219 SSSEMVFYSYGIGFVFLFAPMVLTGELFSAWTFCAEHPVRTYGYAFLFSLAGYLGIVFVLALIKLFGALIAATVTTARKA 298 (367)
T ss_pred CcceEEEeeecccHHHHHHHHHhcccchhhhHHHHhCcHhHHHHHHHHHHHhHhhHHHHHHHHHHhchhHHHHHHHhHhH
Confidence 34555655555554444333321 11 122233455667777777775444444455677777777778888
Q ss_pred HHHHHHHHHhcccchHHHHHHHHHHHhhhhhheecC
Q 019344 120 WAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSD 155 (342)
Q Consensus 120 ~~~il~~l~l~e~~~~~~~~g~~l~~~Gv~l~~~~~ 155 (342)
.|.+++.+++.++++.....+..+.+.|+.+=..+.
T Consensus 299 vTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk 334 (367)
T KOG1582|consen 299 VTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSK 334 (367)
T ss_pred HHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccC
Confidence 899999999999999999999999999999988876
No 111
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=88.20 E-value=3.4 Score=30.33 Aligned_cols=41 Identities=10% Similarity=0.118 Sum_probs=36.4
Q ss_pred hHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHhhccCCC
Q 019344 268 TADMWAVVFRICFYHQKVDWLYFLAFGIVVIGLIIYSTTEK 308 (342)
Q Consensus 268 ~~pv~~~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~ 308 (342)
.-.+.+.++++.+-+++|+...++|..++++|+.+..+.+|
T Consensus 66 vfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~PR 106 (107)
T PF02694_consen 66 VFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILFAPR 106 (107)
T ss_pred hHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEecCC
Confidence 34488999999999999999999999999999998887654
No 112
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=87.99 E-value=7.2 Score=28.69 Aligned_cols=54 Identities=26% Similarity=0.548 Sum_probs=41.4
Q ss_pred hhccchhHHHHh-hhhhHHHHHHHHHHHhcccchHHHHHHHHHHHhhhhhheecC
Q 019344 102 YQFSSITSVTLL-DCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSD 155 (342)
Q Consensus 102 l~~~~~~~~~ii-~~~~pi~~~il~~l~l~e~~~~~~~~g~~l~~~Gv~l~~~~~ 155 (342)
++-.+.+.+... -....+...+..+.+-|+|+++.+++|..++++|+.++.+..
T Consensus 51 l~p~~fGRvYAAYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~P 105 (107)
T PF02694_consen 51 LQPAAFGRVYAAYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILFAP 105 (107)
T ss_pred cCcccchhHHHHhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEecC
Confidence 344445555433 356666777888888999999999999999999999988754
No 113
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=87.47 E-value=2.7 Score=36.67 Aligned_cols=65 Identities=18% Similarity=0.244 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHhHhhhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHhhccC
Q 019344 242 SSFMFYTLAPFVLKLSGATMFNLSLLTADMWAVVFRICFYHQKVDWLYFLAFGIVVIGLIIYSTT 306 (342)
Q Consensus 242 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~pv~~~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~ 306 (342)
+-..+-.+++.++..+.+....+..-...+|.-+++.-+++.+++..||.|+..+.+|++..-..
T Consensus 95 ~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~ 159 (372)
T KOG3912|consen 95 CDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSL 159 (372)
T ss_pred HHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeee
Confidence 44445566666888888888887777777999999999999999999999999999999887654
No 114
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=84.93 E-value=11 Score=32.89 Aligned_cols=137 Identities=14% Similarity=0.054 Sum_probs=82.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHH---Hhh------h---------hhhH
Q 019344 18 RTLYLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLL---YRR------Q---------RLRV 79 (342)
Q Consensus 18 ~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~p~~~~~~r~~~~~~~~~~~~~---~~~------~---------~~~~ 79 (342)
....|+.+-.++.++.+..+..-...++|-..++-+..++-..+....++...- .+. + ..+.
T Consensus 161 ~w~iGi~lL~~al~~sa~mgiyqE~~Y~kyGKh~~EalFytH~LsLP~Flf~~~div~~~~~~~~se~~~~p~~g~~vP~ 240 (330)
T KOG1583|consen 161 WWLIGIALLVFALLLSAYMGIYQETTYQKYGKHWKEALFYTHFLSLPLFLFMGDDIVSHWRLAFKSESYLIPLLGFKVPS 240 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhccchHHHhcchHHHHHHHHhcCcceeccccCccccH
Confidence 455667666666666777777777777776666777777766666554433221 110 0 0122
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHhhccchhHHHHhhhhhHHHHHHHHHHHhcccchHHHHHHHHHHHhhhhhheecC
Q 019344 80 AWYWYLLLGFVDVQG-NFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSD 155 (342)
Q Consensus 80 ~~~~~~~~g~~~~~~-~~~~~~al~~~~~~~~~ii~~~~pi~~~il~~l~l~e~~~~~~~~g~~l~~~Gv~l~~~~~ 155 (342)
.|.+++.--+...+. -..+..+ ...+.-.++++..+-=.+..+++.+.++..+++..|+|..+.+.|.++.....
T Consensus 241 ~~~yLl~n~L~Qy~CikgVy~L~-te~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~h~lGa~lVF~Gt~~fa~~~ 316 (330)
T KOG1583|consen 241 MWVYLLFNVLTQYFCIKGVYILT-TETSSLTVTLVLTLRKFVSLLFSIIYFENPFTPWHWLGAALVFFGTLLFANVW 316 (330)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhh-ceecceEEEEeeeHHHHHHHhheeeEecCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 333332222222222 1111111 22333445666777788888999999999999999999999999999876543
No 115
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=83.96 E-value=3.3 Score=30.28 Aligned_cols=72 Identities=24% Similarity=0.368 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHh-hhhhHHHHHHHHHHHhcccc-hHHHHHHHHHHHhhhhhhe
Q 019344 79 VAWYWYLLLGFVDVQGNFLVNKAYQFSSITSVTLL-DCCTIAWAIVLTWLFLGTRY-SLWQLLGAALCVLGLGLVL 152 (342)
Q Consensus 79 ~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~ii-~~~~pi~~~il~~l~l~e~~-~~~~~~g~~l~~~Gv~l~~ 152 (342)
.+|. +.+-=+++.-+..++|.-+++.+.+.+..+ ++++-.++.+.+.. ++|+. ..+.+.|..+.++|+.+.+
T Consensus 51 l~w~-Y~iPFllNqcgSaly~~tLa~a~islavpv~nsltfafta~~G~~-LGE~~~g~~a~lGt~liv~Gi~Lci 124 (125)
T KOG4831|consen 51 LNWE-YLIPFLLNQCGSALYYLTLASAPISLAVPVTNSLTFAFTAIFGKA-LGEETQGGLALLGTSLIVFGIWLCI 124 (125)
T ss_pred HhHH-HHHHHHHHHhhHHHHHHHHhcCCceeeeeecchhHHHHHHHHHHH-hccccccceeehhhhHHhhhhhhee
Confidence 3444 333445566678889999999999998855 56778888888886 56655 5677889999999987653
No 116
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=83.19 E-value=22 Score=30.17 Aligned_cols=103 Identities=10% Similarity=0.089 Sum_probs=75.4
Q ss_pred hHHHHHHHHHHHHHHHHHH--HHHhhhh------hhH-HHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHhhhhhHHHH
Q 019344 51 PVTQSAFAYFSLALVYGGV--LLYRRQR------LRV-AWYWYLLLGFVDVQGNFLVNKAYQFSSITSVTLLDCCTIAWA 121 (342)
Q Consensus 51 p~~~~~~r~~~~~~~~~~~--~~~~~~~------~~~-~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~ii~~~~pi~~ 121 (342)
.....++.-+++..+++.+ +..++.+ ++. ...++.+.|++..+..++.-+.++-++....+++..+.-...
T Consensus 185 d~dtmfYnNllslPiL~~~s~~~edws~~n~annl~~d~l~am~ISgl~svgiSy~saWcvrVtSSTtySMvGALNKlp~ 264 (309)
T COG5070 185 DFDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVDSLMAMFISGLCSVGISYCSAWCVRVTSSTTYSMVGALNKLPI 264 (309)
T ss_pred hhhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCChHHHHHHHHHHHHHhhhhhccceeEeehhhhHHHHHHHhhhChH
Confidence 4555566666665554443 3333321 122 335677888888888999999999999999999999998888
Q ss_pred HHHHHHHhcccchHHHHHHHHHHHhhhhhhee
Q 019344 122 IVLTWLFLGTRYSLWQLLGAALCVLGLGLVLL 153 (342)
Q Consensus 122 ~il~~l~l~e~~~~~~~~g~~l~~~Gv~l~~~ 153 (342)
++-+.++++|+.+...+.+++++++...+-..
T Consensus 265 alaGlvffdap~nf~si~sillGflsg~iYav 296 (309)
T COG5070 265 ALAGLVFFDAPVNFLSIFSILLGFLSGAIYAV 296 (309)
T ss_pred HHhhhhhcCCchhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998888776655443
No 117
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=82.56 E-value=8 Score=27.86 Aligned_cols=35 Identities=17% Similarity=0.397 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhcccccHHHHHHHHHHHHHHHhhcc
Q 019344 271 MWAVVFRICFYHQKVDWLYFLAFGIVVIGLIIYST 305 (342)
Q Consensus 271 v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~ 305 (342)
.+=+.++.+.++|++.+.++.|..++..|+.+..+
T Consensus 81 ~iFv~Fsvfyl~epl~~~~l~a~~~i~gav~fiFr 115 (116)
T COG3169 81 AIFVPFSVFYLKEPLRWNYLWAFLLILGAVYFIFR 115 (116)
T ss_pred HHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHhcc
Confidence 44567889999999999999999999999877654
No 118
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=81.59 E-value=2.2 Score=31.23 Aligned_cols=32 Identities=16% Similarity=0.377 Sum_probs=26.9
Q ss_pred HHHHHHHHHhcccccHHHHHHHHHHHHHHHhh
Q 019344 272 WAVVFRICFYHQKVDWLYFLAFGIVVIGLIIY 303 (342)
Q Consensus 272 ~~~~~~~~~~~e~~~~~~~~G~~li~~g~~l~ 303 (342)
.=..++.++++|++++..+.|..+++.+++..
T Consensus 75 vF~~Fsv~~l~E~l~~n~l~af~~i~~av~fi 106 (108)
T PF04342_consen 75 VFAPFSVFYLGEPLKWNYLWAFLCILGAVYFI 106 (108)
T ss_pred eeHHHHHHHhCCCccHHHHHHHHHHHHhhhee
Confidence 34567788999999999999999999887654
No 119
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=81.16 E-value=19 Score=26.44 Aligned_cols=47 Identities=11% Similarity=0.133 Sum_probs=33.3
Q ss_pred cchhHHHHhh-hhhHHHHHHHHHHHhcccchHHHHHHHHHHHhhhhhh
Q 019344 105 SSITSVTLLD-CCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLV 151 (342)
Q Consensus 105 ~~~~~~~ii~-~~~pi~~~il~~l~l~e~~~~~~~~g~~l~~~Gv~l~ 151 (342)
-+.+.--+++ ..+-..-+.++.+++||++++....|..+.+.++..+
T Consensus 59 ~s~~QLKi~QEvitL~vF~~Fsv~~l~E~l~~n~l~af~~i~~av~fi 106 (108)
T PF04342_consen 59 FSLAQLKIIQEVITLVVFAPFSVFYLGEPLKWNYLWAFLCILGAVYFI 106 (108)
T ss_pred cCHHHHHHHHHHHhhheeHHHHHHHhCCCccHHHHHHHHHHHHhhhee
Confidence 3444444554 3333444678889999999999999999988776654
No 120
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=75.42 E-value=49 Score=31.21 Aligned_cols=44 Identities=16% Similarity=0.228 Sum_probs=26.1
Q ss_pred hHHHHHHHHHHHHhc-ccccHHHHHHHHHHHHHHHhhccCCCCCCC
Q 019344 268 TADMWAVVFRICFYH-QKVDWLYFLAFGIVVIGLIIYSTTEKDLNP 312 (342)
Q Consensus 268 ~~pv~~~~~~~~~~~-e~~~~~~~~G~~li~~g~~l~~~~~~~~~~ 312 (342)
+.|+++.+ +++.++ ..-...-.-|++.+++|++++.+.++++++
T Consensus 168 l~~~~~~l-a~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~Pqs 212 (448)
T COG2271 168 LAPLVALL-AFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQS 212 (448)
T ss_pred hHHHHHHH-HHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCCccc
Confidence 33444433 555554 333445567788888888888776655443
No 121
>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []. In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].
Probab=75.02 E-value=37 Score=26.35 Aligned_cols=32 Identities=9% Similarity=0.154 Sum_probs=16.5
Q ss_pred HHHHHHHHHhcccccHHHHHHHHHHHHHHHhhc
Q 019344 272 WAVVFRICFYHQKVDWLYFLAFGIVVIGLIIYS 304 (342)
Q Consensus 272 ~~~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~ 304 (342)
+-++++.+.+++ -....++|..++..|++...
T Consensus 73 fyif~G~l~~~~-~~~~~i~g~~~~~~G~~~i~ 104 (136)
T PF08507_consen 73 FYIFLGTLCLGQ-SILSIIIGLLLFLVGVIYII 104 (136)
T ss_pred HHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHH
Confidence 334444444444 33345566666666665443
No 122
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=71.14 E-value=1.2e+02 Score=31.11 Aligned_cols=44 Identities=11% Similarity=0.001 Sum_probs=30.3
Q ss_pred hHHHHhhhhhHHHHHHHHHHHhcccchHHHHHHHHHHHhhhhhh
Q 019344 108 TSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLV 151 (342)
Q Consensus 108 ~~~~ii~~~~pi~~~il~~l~l~e~~~~~~~~g~~l~~~Gv~l~ 151 (342)
+.+.++..+.|.-.+.++...+.+|.+...+.+.+-.++|.+.+
T Consensus 11 gRa~il~~l~PFg~af~~a~~~~~~~~~~~~~~~~~~~~G~~t~ 54 (764)
T TIGR02865 11 GRAVIVSPMAPFGIAFLAAVLLAKKGGDKAFFSALGVLLGAISI 54 (764)
T ss_pred hHHHHhcCCCchHHHHHHHHHHhhcccchHHHHHHHHHHHHHHh
Confidence 45677888999999988888776665444455555556666544
No 123
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=66.18 E-value=40 Score=24.71 Aligned_cols=41 Identities=7% Similarity=0.041 Sum_probs=35.1
Q ss_pred hHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHhhccCCC
Q 019344 268 TADMWAVVFRICFYHQKVDWLYFLAFGIVVIGLIIYSTTEK 308 (342)
Q Consensus 268 ~~pv~~~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~ 308 (342)
+-.+.+.++.++.=+.+|+...++|..+.++|+.+....++
T Consensus 67 vyI~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G~~vil~~pR 107 (109)
T COG1742 67 VYIAASLAWLWVVDGVRPDRYDWIGAAICLAGVAVILFGPR 107 (109)
T ss_pred hHHHHHHHHHHHHcCcCCcHHHhhhHHHHHhceeeeEeCCC
Confidence 33478889999999999999999999999999888777654
No 124
>PF07168 Ureide_permease: Ureide permease; InterPro: IPR009834 This entry represents ureide permease, which transports a wide spectrum of oxo derivatives of heterocyclic nitrogen compounds, including allantoin, uric acid and xanthine, but not adenine. Transport is dependent on glucose and a proton gradient [].
Probab=64.69 E-value=1.5 Score=38.73 Aligned_cols=59 Identities=14% Similarity=0.118 Sum_probs=30.7
Q ss_pred HHHHHHHHHhhhhhHHHHhHh-hhHHHHHHHHHHHHhccccc--HHHHHHHHHHHHHHHhhcc
Q 019344 246 FYTLAPFVLKLSGATMFNLSL-LTADMWAVVFRICFYHQKVD--WLYFLAFGIVVIGLIIYST 305 (342)
Q Consensus 246 ~~~~~~~~~~~~~a~~~~~~~-~~~pv~~~~~~~~~~~e~~~--~~~~~G~~li~~g~~l~~~ 305 (342)
++++..+++...+..+.-.+. -+.-++++.+.|+. +.+.+ ...+.|..++++++++-..
T Consensus 85 gNillq~aia~aGmSVafpvg~glalVlGv~~NYfl-d~~~n~a~iLF~GV~cf~iAI~lga~ 146 (336)
T PF07168_consen 85 GNILLQAAIAFAGMSVAFPVGIGLALVLGVTLNYFL-DPKINRAEILFPGVACFLIAIILGAA 146 (336)
T ss_pred HHHHHHHHHHHhcceeeeeeecceEEEEeeeeeeec-cCCCCCceEEEccHHHHHHHHHHHHH
Confidence 345555555555444322111 12224455555554 44443 3566788888888877553
No 125
>PRK06638 NADH:ubiquinone oxidoreductase subunit J; Provisional
Probab=63.90 E-value=86 Score=26.16 Aligned_cols=33 Identities=12% Similarity=0.209 Sum_probs=22.4
Q ss_pred HHHHHHHhcccccHHHHHHHHHHH--HHHHhhccC
Q 019344 274 VVFRICFYHQKVDWLYFLAFGIVV--IGLIIYSTT 306 (342)
Q Consensus 274 ~~~~~~~~~e~~~~~~~~G~~li~--~g~~l~~~~ 306 (342)
--+|..++.+-.-+.+++|..+.+ +|.....++
T Consensus 133 ~~iG~~L~t~y~l~fe~~silLLvAmIGAI~La~~ 167 (198)
T PRK06638 133 KAIGILLFTDYLLPFELASVLLLVAMVGAIVLARR 167 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 344777788888888888888776 455444443
No 126
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=61.93 E-value=61 Score=23.81 Aligned_cols=41 Identities=27% Similarity=0.589 Sum_probs=33.6
Q ss_pred hhhHHHHHHHHHHHhcccchHHHHHHHHHHHhhhhhheecC
Q 019344 115 CCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSD 155 (342)
Q Consensus 115 ~~~pi~~~il~~l~l~e~~~~~~~~g~~l~~~Gv~l~~~~~ 155 (342)
....+...+..++.-|.++++.+++|..++++|+.++....
T Consensus 66 GvyI~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G~~vil~~p 106 (109)
T COG1742 66 GVYIAASLAWLWVVDGVRPDRYDWIGAAICLAGVAVILFGP 106 (109)
T ss_pred chHHHHHHHHHHHHcCcCCcHHHhhhHHHHHhceeeeEeCC
Confidence 44555566777778899999999999999999998887754
No 127
>PF14851 FAM176: FAM176 family
Probab=59.33 E-value=77 Score=25.23 Aligned_cols=8 Identities=25% Similarity=0.389 Sum_probs=3.1
Q ss_pred hHHHHhHh
Q 019344 259 ATMFNLSL 266 (342)
Q Consensus 259 a~~~~~~~ 266 (342)
+-.+.++.
T Consensus 19 PE~~aLYF 26 (153)
T PF14851_consen 19 PERFALYF 26 (153)
T ss_pred hHHHHHHH
Confidence 33444433
No 128
>PF07698 7TM-7TMR_HD: 7TM receptor with intracellular HD hydrolase; InterPro: IPR011621 These bacterial 7TM receptor proteins have an intracellular domain IPR006674 from INTERPRO. This entry corresponds to the 7 helix transmembrane domain. These proteins also contain an N-terminal extracellular domain.
Probab=57.51 E-value=1.1e+02 Score=25.19 Aligned_cols=59 Identities=19% Similarity=0.225 Sum_probs=25.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHhhhhhHHHH-HHHHHHHhcccch
Q 019344 74 RQRLRVAWYWYLLLGFVDVQGNFLVNKAYQFSSITSVTLLDCCTIAWA-IVLTWLFLGTRYS 134 (342)
Q Consensus 74 ~~~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~ii~~~~pi~~-~il~~l~l~e~~~ 134 (342)
+++..++.+...+..........+........+ ...-..+..|+.. +++...++++|..
T Consensus 26 ~~~~~~~~~~l~l~~~l~~l~l~l~~~~~~~~~--~~~~~~~~~P~a~~~~l~~~l~~~~~a 85 (194)
T PF07698_consen 26 RPRILRSNKYLLLLSLLLLLSLLLAKIILFFIS--DISYFPYLIPVAAAAMLLTILIDPRLA 85 (194)
T ss_pred CcHhhhchhHHHHHHHHHHHHHHHHHHHHHhcc--cchhhhhhhHHHHHHHHHHHHhcchHH
Confidence 334444445555554444444333222222122 3333445555443 4455556676643
No 129
>KOG2322 consensus N-methyl-D-aspartate receptor glutamate-binding subunit [Signal transduction mechanisms]
Probab=56.76 E-value=98 Score=26.47 Aligned_cols=36 Identities=19% Similarity=0.260 Sum_probs=25.9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHH-hhccCChHHHH
Q 019344 165 RPLLGDVLVIAGTIFFATSNVGEEF-FVKKKDRVEVV 200 (342)
Q Consensus 165 ~~~~G~~l~l~aa~~~a~~~v~~~~-~~~~~~~~~~~ 200 (342)
....-.+.+.++|+.+..|.++.-. ..++.+|.+..
T Consensus 192 ~~~~~~vya~lgAllf~~yl~~Dtqllm~~~SPEEYI 228 (237)
T KOG2322|consen 192 GPILVMVYAALGALLFCGYLVYDTQLLMGRISPEEYI 228 (237)
T ss_pred HHHHHHHHHHHHHHHHhHHHHhhhHHHhccCCHHHHH
Confidence 4566778888888888888888554 45667776654
No 130
>PF15345 TMEM51: Transmembrane protein 51
Probab=56.71 E-value=5.4 Score=33.71 Aligned_cols=24 Identities=0% Similarity=0.030 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHhhccCCCCCCCC
Q 019344 290 FLAFGIVVIGLIIYSTTEKDLNPM 313 (342)
Q Consensus 290 ~~G~~li~~g~~l~~~~~~~~~~~ 313 (342)
-.|+++.++++++..+.++|..+.
T Consensus 66 G~Gv~LLLLSICL~IR~KRr~rq~ 89 (233)
T PF15345_consen 66 GSGVALLLLSICLSIRDKRRRRQG 89 (233)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhc
Confidence 458888889999998877655443
No 131
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=54.43 E-value=1.8e+02 Score=26.81 Aligned_cols=6 Identities=0% Similarity=0.335 Sum_probs=2.5
Q ss_pred HHHhcc
Q 019344 278 ICFYHQ 283 (342)
Q Consensus 278 ~~~~~e 283 (342)
..+++|
T Consensus 115 ~~l~g~ 120 (385)
T PF03547_consen 115 QALFGE 120 (385)
T ss_pred HHHhcc
Confidence 334444
No 132
>PF15471 TMEM171: Transmembrane protein family 171
Probab=53.85 E-value=14 Score=31.91 Aligned_cols=23 Identities=22% Similarity=0.335 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHhhccCCCCC
Q 019344 288 LYFLAFGIVVIGLIIYSTTEKDL 310 (342)
Q Consensus 288 ~~~~G~~li~~g~~l~~~~~~~~ 310 (342)
.|++|-.+++.|+.....+.-||
T Consensus 162 lQImGPlIVl~GLCFFVVAHvKK 184 (319)
T PF15471_consen 162 LQIMGPLIVLVGLCFFVVAHVKK 184 (319)
T ss_pred hhhhhhHHHHHhhhhhheeeeee
Confidence 79999999999998888766443
No 133
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=53.34 E-value=1.3e+02 Score=28.66 Aligned_cols=14 Identities=14% Similarity=0.228 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHh
Q 019344 289 YFLAFGIVVIGLII 302 (342)
Q Consensus 289 ~~~G~~li~~g~~l 302 (342)
.+.|+.+++.+++.
T Consensus 416 ~~~~~~~~i~~~~~ 429 (476)
T PLN00028 416 SLMGVMIIACTLPV 429 (476)
T ss_pred HHHHHHHHHHHHHH
Confidence 34455555544443
No 134
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=53.08 E-value=2.1e+02 Score=27.19 Aligned_cols=74 Identities=20% Similarity=0.035 Sum_probs=43.6
Q ss_pred HhhhhhHHHHHHHHHHHhcccchHHHHHHHHHHH--hhhhhheecCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHH
Q 019344 112 LLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCV--LGLGLVLLSDAGGDGGGGSRPLLGDVLVIAGTIFFATSNVGEEF 189 (342)
Q Consensus 112 ii~~~~pi~~~il~~l~l~e~~~~~~~~g~~l~~--~Gv~l~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~~~ 189 (342)
++.-..+..+.++-=++-|.|+++.|++-+.++. .=++++..++ +...+..+.+.|+.+-++-..+.+.
T Consensus 302 iLFI~LTF~~fflfE~~~~~~iHpiQY~LVGlAl~lFYlLLLSlSE---------hi~F~~AYliAa~a~i~Li~~Y~~~ 372 (430)
T PF06123_consen 302 ILFIGLTFLAFFLFELLSKLRIHPIQYLLVGLALVLFYLLLLSLSE---------HIGFNLAYLIAALACIGLISLYLSS 372 (430)
T ss_pred HHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHh---------hhchHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444567888888865544444 4444444443 4455667777777777777777777
Q ss_pred hhccC
Q 019344 190 FVKKK 194 (342)
Q Consensus 190 ~~~~~ 194 (342)
..++.
T Consensus 373 vl~~~ 377 (430)
T PF06123_consen 373 VLKSW 377 (430)
T ss_pred HHhcc
Confidence 76664
No 135
>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]
Probab=48.28 E-value=2.4e+02 Score=26.52 Aligned_cols=63 Identities=16% Similarity=0.132 Sum_probs=32.0
Q ss_pred ccchHHHHHHHHHHHhhhhhheecCC--C-------CCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 019344 131 TRYSLWQLLGAALCVLGLGLVLLSDA--G-------GDGGGGSRPLLGDVLVIAGTIFFATSNVGEEFFVKK 193 (342)
Q Consensus 131 e~~~~~~~~g~~l~~~Gv~l~~~~~~--~-------~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~~~~~~~ 193 (342)
|+-+.+...-....+.|+..+.--+. + .-...+.....-..+.+.|-+.--+.++...+...+
T Consensus 11 ~p~d~~~~v~~i~~llGiG~LlpWN~fiTa~~y~~~~~~~~~~~~~F~~~~~~~a~i~~ll~~~~n~~~~~~ 82 (406)
T KOG1479|consen 11 EPEDGYNLVYLIFLLLGIGTLLPWNMFITASDYYYYRFPGYHNSKNFTSSYTLAAQIPLLLFNLLNAFLNTR 82 (406)
T ss_pred CcccccccHHHHHHHHhcccccchHhhhccHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555666666666665432110 0 000111133445566677777777777766665555
No 136
>PRK11469 hypothetical protein; Provisional
Probab=47.20 E-value=1.6e+02 Score=24.28 Aligned_cols=44 Identities=11% Similarity=0.212 Sum_probs=28.7
Q ss_pred HHHhHhhhHHHHHHHHHHHHhcccccHHHHHHHHHHH-HHHHhhc
Q 019344 261 MFNLSLLTADMWAVVFRICFYHQKVDWLYFLAFGIVV-IGLIIYS 304 (342)
Q Consensus 261 ~~~~~~~~~pv~~~~~~~~~~~e~~~~~~~~G~~li~-~g~~l~~ 304 (342)
..+......|..+...+..+-+-.+...+++|..+.+ +|..+..
T Consensus 42 ~~g~~q~~m~~~g~~~G~~l~~~i~~~~~~i~~~lL~~lG~~mi~ 86 (188)
T PRK11469 42 IFGAVETLTPLIGWGMGMLASRFVLEWNHWIAFVLLIFLGGRMII 86 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556777888888887765555566777766554 5776554
No 137
>COG4657 RnfA Predicted NADH:ubiquinone oxidoreductase, subunit RnfA [Energy production and conversion]
Probab=47.02 E-value=73 Score=25.50 Aligned_cols=63 Identities=22% Similarity=0.236 Sum_probs=43.4
Q ss_pred HHHHHhcccchHHHHHHHHH-------HHhhhhhheecCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 019344 124 LTWLFLGTRYSLWQLLGAAL-------CVLGLGLVLLSDAGGDGGGGSRPLLGDVLVIAGTIFFATSNVGEEFFVKK 193 (342)
Q Consensus 124 l~~l~l~e~~~~~~~~g~~l-------~~~Gv~l~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~~~~~~~ 193 (342)
......|..++.++.+|+.+ ++.|+.++...+. .+.......++.+++++++..++..-..++
T Consensus 88 ~Em~v~KtsP~LYr~LGIfLPLITTNCaVLgvaLln~~~~-------~~f~qsv~~gf~a~lGfslvmvlfA~iRER 157 (193)
T COG4657 88 TEMVVRKTSPTLYRLLGIFLPLITTNCAVLGVALLNINEG-------HNFLQSVVYGFGAALGFSLVMVLFAAIRER 157 (193)
T ss_pred HHHHHHccCHHHHHHHHHhhhhHhhchHHHHHHHHHhhhh-------hhHHHHHHHHhhhHhhHHHHHHHHHHHHHH
Confidence 34445566666777777664 5678888877652 445677788899999999888876655444
No 138
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=46.98 E-value=34 Score=25.16 Aligned_cols=54 Identities=11% Similarity=0.143 Sum_probs=37.7
Q ss_pred HHHHhhhhhH-HHHhHhhhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHhhc
Q 019344 251 PFVLKLSGAT-MFNLSLLTADMWAVVFRICFYHQKVDWLYFLAFGIVVIGLIIYS 304 (342)
Q Consensus 251 ~~~~~~~~a~-~~~~~~~~~pv~~~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~ 304 (342)
+..+++.+-. .+.+.+.+.-.++.+++..+-.|.+.-..+.|..++++|+.+..
T Consensus 70 ~~tLa~a~islavpv~nsltfafta~~G~~LGE~~~g~~a~lGt~liv~Gi~Lci 124 (125)
T KOG4831|consen 70 YLTLASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGLALLGTSLIVFGIWLCI 124 (125)
T ss_pred HHHHhcCCceeeeeecchhHHHHHHHHHHHhccccccceeehhhhHHhhhhhhee
Confidence 3345554433 23344445558888999887666778889999999999998754
No 139
>COG1971 Predicted membrane protein [Function unknown]
Probab=45.82 E-value=1.7e+02 Score=24.27 Aligned_cols=45 Identities=11% Similarity=0.296 Sum_probs=27.6
Q ss_pred HHHhHhhhHHHHHHHHHHHHhcccccHHHHHHHHH-HHHHHHhhcc
Q 019344 261 MFNLSLLTADMWAVVFRICFYHQKVDWLYFLAFGI-VVIGLIIYST 305 (342)
Q Consensus 261 ~~~~~~~~~pv~~~~~~~~~~~e~~~~~~~~G~~l-i~~g~~l~~~ 305 (342)
..+......|+++...+.++=+-.-.+.+|+|.++ ++.|..+..-
T Consensus 42 ~fG~f~~i~pliG~~~g~~~s~~i~~~~~wigf~lL~~lG~~mI~e 87 (190)
T COG1971 42 IFGVFQAIMPLIGWFIGKFLSTFIAEWAHWIGFVLLIILGLKMIIE 87 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556677777777776544556677666554 4577765543
No 140
>PF02447 GntP_permease: GntP family permease; InterPro: IPR003474 This is a family of integral membrane permeases that are involved in gluconate uptake. Escherichia coli contains several members of this family including GntU, a low affinity transporter [] and GntT, a high affinity transporter [].; GO: 0015128 gluconate transmembrane transporter activity, 0035429 gluconate transmembrane transport, 0016020 membrane
Probab=45.25 E-value=2.6e+02 Score=26.65 Aligned_cols=18 Identities=0% Similarity=0.093 Sum_probs=10.1
Q ss_pred hcccccHHHHHHHHHHHH
Q 019344 281 YHQKVDWLYFLAFGIVVI 298 (342)
Q Consensus 281 ~~e~~~~~~~~G~~li~~ 298 (342)
+|..++..-+.|..+-+-
T Consensus 167 lg~dlG~~il~Gl~vaip 184 (441)
T PF02447_consen 167 LGADLGLVILYGLIVAIP 184 (441)
T ss_pred hCCChhHHHHHhHHHHHH
Confidence 466666665666554443
No 141
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=43.70 E-value=2.7e+02 Score=25.88 Aligned_cols=62 Identities=16% Similarity=0.189 Sum_probs=41.6
Q ss_pred hhhhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCCCc---hHHHHHHHHHHH-HHHHHHHHHHhh
Q 019344 13 SHVTLRTLYL-LFLGQLVSFTLALMSFTSSLIADLGVDA---PVTQSAFAYFSL-ALVYGGVLLYRR 74 (342)
Q Consensus 13 ~~~~~~~~~~-~~~~~~~al~~~~~~~~~~~~~~~~~~~---p~~~~~~r~~~~-~~~~~~~~~~~~ 74 (342)
.||+++.|+. +++|.-..+..+..+|.-....+++... -....+....-. .-++.|.+.+|+
T Consensus 204 vw~~~~aW~vtLfmGlqS~~~Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~ 270 (395)
T COG2807 204 VWRSPLAWQVTLFMGLQSLLYYIVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRS 270 (395)
T ss_pred cccCchhHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5777777776 8888889999999999999888876543 233333333333 444566665543
No 142
>PRK13108 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=43.32 E-value=2.5e+02 Score=26.99 Aligned_cols=23 Identities=4% Similarity=-0.022 Sum_probs=19.2
Q ss_pred ccHHHHHHHHHHHHHHHhhccCC
Q 019344 285 VDWLYFLAFGIVVIGLIIYSTTE 307 (342)
Q Consensus 285 ~~~~~~~G~~li~~g~~l~~~~~ 307 (342)
++..|++...++++|+++..+.+
T Consensus 254 l~~~Q~lSl~~il~gl~~~~~~~ 276 (460)
T PRK13108 254 IRINSFTSTFVFIGAVVYIILAP 276 (460)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhh
Confidence 78899999999999987776543
No 143
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=42.01 E-value=25 Score=23.43 Aligned_cols=22 Identities=23% Similarity=0.572 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHhhccCCCCC
Q 019344 289 YFLAFGIVVIGLIIYSTTEKDL 310 (342)
Q Consensus 289 ~~~G~~li~~g~~l~~~~~~~~ 310 (342)
.++++.++++|..+|-...+++
T Consensus 6 iLi~ICVaii~lIlY~iYnr~~ 27 (68)
T PF05961_consen 6 ILIIICVAIIGLILYGIYNRKK 27 (68)
T ss_pred HHHHHHHHHHHHHHHHHHhccc
Confidence 4567777777877776544443
No 144
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=41.79 E-value=8.6 Score=33.57 Aligned_cols=53 Identities=15% Similarity=0.118 Sum_probs=0.0
Q ss_pred HHHhhccchhHHHHhhhhhHHHHHHHHH-HHhccc-chHHHHHHHHHHHhhhhhh
Q 019344 99 NKAYQFSSITSVTLLDCCTIAWAIVLTW-LFLGTR-YSLWQLLGAALCVLGLGLV 151 (342)
Q Consensus 99 ~~al~~~~~~~~~ii~~~~pi~~~il~~-l~l~e~-~~~~~~~g~~l~~~Gv~l~ 151 (342)
|.-++-.+-+..+++.+...+.+.++-. +++|+| +-+...+.+++.++-.++.
T Consensus 41 ~iimsd~t~~a~~vl~sfAvvliiIIiIImlF~RrLLCPLGlLCiilimi~lLv~ 95 (381)
T PF05297_consen 41 FIIMSDLTQGALTVLYSFAVVLIIIIIIIMLFKRRLLCPLGLLCIILIMIVLLVS 95 (381)
T ss_dssp -------------------------------------------------------
T ss_pred HHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHH
Confidence 3333444444445555544444433333 334544 4566666665555444433
No 145
>TIGR02840 spore_YtaF putative sporulation protein YtaF. This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.
Probab=41.39 E-value=83 Score=26.42 Aligned_cols=47 Identities=9% Similarity=-0.034 Sum_probs=27.9
Q ss_pred hhHHHHhHhhhHHHHHHHHHHHHhccccc-HHHHHHH-HHHHHHHHhhc
Q 019344 258 GATMFNLSLLTADMWAVVFRICFYHQKVD-WLYFLAF-GIVVIGLIIYS 304 (342)
Q Consensus 258 ~a~~~~~~~~~~pv~~~~~~~~~~~e~~~-~~~~~G~-~li~~g~~l~~ 304 (342)
.+...+.....-|..+..++..+-+-.+. ..+++|. +++.+|..+..
T Consensus 32 ~~l~ig~~~~~~~~lg~~~G~~~~~~i~~~~~~~ig~~iLi~iG~~mi~ 80 (206)
T TIGR02840 32 SNLIIAVISGLFIFISMLLGKFLAKFLPPKVTEILGAFILIAIGIWIIY 80 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHH
Confidence 34455555556677777777776544434 3455554 44557876654
No 146
>PF07444 Ycf66_N: Ycf66 protein N-terminus; InterPro: IPR010004 This entry represents Ycf66, a protein that is restricted to the chloroplasts of simple plants and algae. It is also found in the cyanobacteria. The function is unknown. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=41.25 E-value=20 Score=25.32 Aligned_cols=28 Identities=18% Similarity=0.147 Sum_probs=21.9
Q ss_pred cccHHHHHHHHHHHHHHHhhccCCCCCC
Q 019344 284 KVDWLYFLAFGIVVIGLIIYSTTEKDLN 311 (342)
Q Consensus 284 ~~~~~~~~G~~li~~g~~l~~~~~~~~~ 311 (342)
..++..++|.++++.|..+|..+..+++
T Consensus 4 ~~~~~~iLgi~l~~~~~~Ly~lr~~~Pe 31 (84)
T PF07444_consen 4 GFGPSYILGIILILGGLALYFLRFFRPE 31 (84)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHCcc
Confidence 4678899999999999999976444443
No 147
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=39.56 E-value=2.9e+02 Score=24.97 Aligned_cols=18 Identities=6% Similarity=-0.180 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHhhccCCh
Q 019344 179 FFATSNVGEEFFVKKKDR 196 (342)
Q Consensus 179 ~~a~~~v~~~~~~~~~~~ 196 (342)
.+++.....-.+.++.++
T Consensus 59 ~~~~~~~~~G~l~Dr~g~ 76 (405)
T TIGR00891 59 SRWFGALMFGLWGDRYGR 76 (405)
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 333333333334444333
No 148
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=39.27 E-value=3.8e+02 Score=26.21 Aligned_cols=36 Identities=11% Similarity=0.090 Sum_probs=16.3
Q ss_pred hHHHHHHHHHHHHhcccccHH-HHHHHHHHHHHHHhh
Q 019344 268 TADMWAVVFRICFYHQKVDWL-YFLAFGIVVIGLIIY 303 (342)
Q Consensus 268 ~~pv~~~~~~~~~~~e~~~~~-~~~G~~li~~g~~l~ 303 (342)
..|+-+.++|.+.-.-..... .+.|..+++.+.+..
T Consensus 355 ~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~ 391 (524)
T PF05977_consen 355 GMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIAL 391 (524)
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence 456666666665432223223 334444444444333
No 149
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=38.86 E-value=3.7e+02 Score=26.05 Aligned_cols=43 Identities=7% Similarity=0.322 Sum_probs=24.3
Q ss_pred hHHHHHHHHHHHHhc----ccc-cH---HHHHHHHHHHHHHHhhccCCCCC
Q 019344 268 TADMWAVVFRICFYH----QKV-DW---LYFLAFGIVVIGLIIYSTTEKDL 310 (342)
Q Consensus 268 ~~pv~~~~~~~~~~~----e~~-~~---~~~~G~~li~~g~~l~~~~~~~~ 310 (342)
+..+++-+++.-+++ ... +| .-+.|.+.++.|+++...-+...
T Consensus 181 ~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P 231 (495)
T KOG2533|consen 181 LGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNP 231 (495)
T ss_pred hhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCCh
Confidence 444667777776543 222 22 24567777777877666544333
No 150
>PF08042 PqqA: PqqA family; InterPro: IPR011725 This entry describes a very small protein, coenzyme PQQ biosynthesis protein A, which is smaller than 25 amino acids in many species. It is proposed to serve as a peptide precursor of coenzyme pyrrolo-quinoline-quinone (PQQ), with Glu and Tyr of a conserved motif Glu-Xxx-Xxx-Xxx-Tyr becoming part of the product [].; GO: 0018189 pyrroloquinoline quinone biosynthetic process
Probab=38.60 E-value=15 Score=18.24 Aligned_cols=7 Identities=43% Similarity=1.132 Sum_probs=4.4
Q ss_pred CCCccch
Q 019344 1 MNWNAPI 7 (342)
Q Consensus 1 ~~~~~~~ 7 (342)
|.|++|.
T Consensus 1 M~W~~P~ 7 (20)
T PF08042_consen 1 MAWTKPK 7 (20)
T ss_pred CCccCCc
Confidence 5677664
No 151
>PRK11715 inner membrane protein; Provisional
Probab=38.46 E-value=3.6e+02 Score=25.70 Aligned_cols=59 Identities=19% Similarity=0.030 Sum_probs=35.1
Q ss_pred HHhcccchHHHHHHHHHHH--hhhhhheecCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 019344 127 LFLGTRYSLWQLLGAALCV--LGLGLVLLSDAGGDGGGGSRPLLGDVLVIAGTIFFATSNVGEEFFVKKK 194 (342)
Q Consensus 127 l~l~e~~~~~~~~g~~l~~--~Gv~l~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~~~~~~~~ 194 (342)
++-|.|+++.|++-+.++. .=.+++..++ +...+..+.+.|+.|-.+-..+.....++.
T Consensus 323 ~~~~~~iHpiQYlLVGlAl~lFYLLLLSlSE---------HigF~~AYliAa~a~v~li~~Y~~~vl~~~ 383 (436)
T PRK11715 323 LLKKLRIHPVQYLLVGLALVLFYLLLLSLSE---------HIGFTLAYLIAALACVLLIGFYLSAVLRSW 383 (436)
T ss_pred HhcCceecHHHHHHHHHHHHHHHHHHHHHHh---------hhchHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3446778888865544444 4444444443 445566666777777777666666666553
No 152
>PF09656 PGPGW: Putative transmembrane protein (PGPGW); InterPro: IPR019099 This entry represents proteins that contain three predicted transmembrane helices and an unusual motif with consensus sequence PGPGW.
Probab=38.22 E-value=1.1e+02 Score=19.56 Aligned_cols=45 Identities=22% Similarity=0.298 Sum_probs=31.5
Q ss_pred HHHHHHHHHHhhhhhheecCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhc
Q 019344 136 WQLLGAALCVLGLGLVLLSDAGGDGGGGSRPLLGDVLVIAGTIFFATSNVGEEFFVK 192 (342)
Q Consensus 136 ~~~~g~~l~~~Gv~l~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~~~~~~ 192 (342)
...+|..+.++|++++..+.. |.+..+++-...|-+.-..|+..+
T Consensus 4 v~v~G~~lv~~Gii~~~lPGp------------G~l~i~~GL~iLa~ef~wArr~l~ 48 (53)
T PF09656_consen 4 VGVLGWVLVVAGIIMLPLPGP------------GLLVIFLGLAILATEFPWARRLLR 48 (53)
T ss_pred hhhHHHHHHHHHHHhhcCCCC------------cHHHHHHHHHHHHHhhHHHHHHHH
Confidence 357888899999999988762 456666666666666666665543
No 153
>PRK11715 inner membrane protein; Provisional
Probab=37.31 E-value=3.7e+02 Score=25.58 Aligned_cols=82 Identities=18% Similarity=0.097 Sum_probs=47.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHhhhhhHHHH-HHHHHHHhcccchHHHHHHHHHHHhhhhhhe
Q 019344 74 RQRLRVAWYWYLLLGFVDVQGNFLVNKAYQFSSITSVTLLDCCTIAWA-IVLTWLFLGTRYSLWQLLGAALCVLGLGLVL 152 (342)
Q Consensus 74 ~~~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~ii~~~~pi~~-~il~~l~l~e~~~~~~~~g~~l~~~Gv~l~~ 152 (342)
.++.+-+...+++.|+.....+.+...=-+|.+-..+.++.++..+.. .....-.+|.+-...-..+++.++-|++...
T Consensus 324 ~~~~~iHpiQYlLVGlAl~lFYLLLLSlSEHigF~~AYliAa~a~v~li~~Y~~~vl~~~k~g~~~~~~L~~LYg~Ly~l 403 (436)
T PRK11715 324 LKKLRIHPVQYLLVGLALVLFYLLLLSLSEHIGFTLAYLIAALACVLLIGFYLSAVLRSWKRGLLFAAALAALYGVLYGL 403 (436)
T ss_pred hcCceecHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 345567888899999988887666554447888777777665554432 2222333443333333444444455555555
Q ss_pred ecC
Q 019344 153 LSD 155 (342)
Q Consensus 153 ~~~ 155 (342)
...
T Consensus 404 Lq~ 406 (436)
T PRK11715 404 LQS 406 (436)
T ss_pred HHH
Confidence 443
No 154
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=35.82 E-value=5.5 Score=34.36 Aligned_cols=59 Identities=12% Similarity=0.124 Sum_probs=45.5
Q ss_pred HHHHHHhhhhhHHHHhHhhhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHhhccCC
Q 019344 249 LAPFVLKLSGATMFNLSLLTADMWAVVFRICFYHQKVDWLYFLAFGIVVIGLIIYSTTE 307 (342)
Q Consensus 249 ~~~~~~~~~~a~~~~~~~~~~pv~~~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~ 307 (342)
+...+.++.+-....+...-..+...+++|++++.+-.+.++.|.++.+.|+++....+
T Consensus 94 ~vV~AyQyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~sD 152 (336)
T KOG2766|consen 94 FVVKAYQYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFSD 152 (336)
T ss_pred EEeeehhhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEee
Confidence 33445556555555555555556788999999999999999999999999999887654
No 155
>PF15102 TMEM154: TMEM154 protein family
Probab=35.20 E-value=41 Score=26.39 Aligned_cols=22 Identities=5% Similarity=-0.007 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHhhccCCCCCC
Q 019344 290 FLAFGIVVIGLIIYSTTEKDLN 311 (342)
Q Consensus 290 ~~G~~li~~g~~l~~~~~~~~~ 311 (342)
+++.+|++..++++.+.+||+.
T Consensus 66 VLLvlLLl~vV~lv~~~kRkr~ 87 (146)
T PF15102_consen 66 VLLVLLLLSVVCLVIYYKRKRT 87 (146)
T ss_pred HHHHHHHHHHHHheeEEeeccc
Confidence 3444555555666665555444
No 156
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=34.60 E-value=4.8e+02 Score=26.06 Aligned_cols=22 Identities=14% Similarity=0.129 Sum_probs=12.2
Q ss_pred ccchHHHHHHHHHHHhhhhhhe
Q 019344 131 TRYSLWQLLGAALCVLGLGLVL 152 (342)
Q Consensus 131 e~~~~~~~~g~~l~~~Gv~l~~ 152 (342)
++.++.-+++..+..+++..+.
T Consensus 377 r~~Kw~li~~~~~~ta~~Gama 398 (599)
T PF06609_consen 377 RHIKWQLIFGSVLMTAFCGAMA 398 (599)
T ss_pred cchhHHHHHHHHHHHHHHHHHH
Confidence 3555555667666665444443
No 157
>PRK09412 anaerobic C4-dicarboxylate transporter; Reviewed
Probab=33.76 E-value=4.2e+02 Score=25.15 Aligned_cols=31 Identities=32% Similarity=0.402 Sum_probs=15.8
Q ss_pred HHHHHHHHhcccchHHHHHHH-HHHHhhhhhheec
Q 019344 121 AIVLTWLFLGTRYSLWQLLGA-ALCVLGLGLVLLS 154 (342)
Q Consensus 121 ~~il~~l~l~e~~~~~~~~g~-~l~~~Gv~l~~~~ 154 (342)
..+++.++.+-|. .-+|+ +.+-+|+.++...
T Consensus 7 ~~~~~~~~~g~~~---~~~~~~~~~~~~~~~~~~~ 38 (433)
T PRK09412 7 IIVLLAIFLGARL---GGIGIGFAGGLGVLILTFI 38 (433)
T ss_pred HHHHHHHHHhHhh---hHHHHHHHHHHHHHHHHHh
Confidence 4566777777664 22222 2234556555554
No 158
>PRK11010 ampG muropeptide transporter; Validated
Probab=31.56 E-value=4.7e+02 Score=25.05 Aligned_cols=18 Identities=22% Similarity=0.551 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHhhcc
Q 019344 288 LYFLAFGIVVIGLIIYST 305 (342)
Q Consensus 288 ~~~~G~~li~~g~~l~~~ 305 (342)
...+..++.+.|..+...
T Consensus 384 ~f~~~~~~~l~~l~~~~~ 401 (491)
T PRK11010 384 FYLFSVAAAVPGLLLLLV 401 (491)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345555555566555543
No 159
>KOG4255 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.46 E-value=4.2e+02 Score=24.40 Aligned_cols=45 Identities=2% Similarity=-0.142 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhhh
Q 019344 175 AGTIFFATSNVGEEFFVKKKDRVEVVCMIGVYGLLVSAVQLSILE 219 (342)
Q Consensus 175 ~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (342)
.+++.--+++++-|....+.+...+.+.+...+.+..+...++++
T Consensus 57 la~lgpLi~tllhk~~~~~i~~VPiif~ll~~a~v~~l~laflW~ 101 (439)
T KOG4255|consen 57 LANLGPLIVTLLHKGAPGTIPTVPIIFVLLLLACVCQLGLAFLWH 101 (439)
T ss_pred HHcchhHHHHHHHhhCCCcCCCCCchhHHHHHHHHHHHHHHHHHh
Confidence 344444455555444333344455555554444554443344444
No 160
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=31.43 E-value=26 Score=32.38 Aligned_cols=11 Identities=36% Similarity=0.416 Sum_probs=4.4
Q ss_pred HHHHHHHhccc
Q 019344 122 IVLTWLFLGTR 132 (342)
Q Consensus 122 ~il~~l~l~e~ 132 (342)
.+++.+.++.+
T Consensus 72 ~fF~~igL~~~ 82 (368)
T PF03616_consen 72 IFFTTIGLGAS 82 (368)
T ss_pred HHHHHHhhccc
Confidence 33444444333
No 161
>COG4452 CreD Inner membrane protein involved in colicin E2 resistance [Defense mechanisms]
Probab=31.34 E-value=4.3e+02 Score=24.57 Aligned_cols=43 Identities=21% Similarity=0.158 Sum_probs=29.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHhhhhh
Q 019344 75 QRLRVAWYWYLLLGFVDVQGNFLVNKAYQFSSITSVTLLDCCT 117 (342)
Q Consensus 75 ~~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~ii~~~~ 117 (342)
...+.++..+.+.|+.....+.+...=-+|++-..+.++.++.
T Consensus 319 t~~~~Hp~QY~LVGlsLv~FYLLLLaLsEHiGFt~Ayl~aSla 361 (443)
T COG4452 319 TGQRLHPMQYLLVGLSLVMFYLLLLALSEHIGFTVAYLIASLA 361 (443)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHhhcCcCHHHHHHHHH
Confidence 3446688889999988877766554444677777776655443
No 162
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=30.90 E-value=32 Score=26.20 Aligned_cols=9 Identities=0% Similarity=-0.035 Sum_probs=3.6
Q ss_pred HHHHHHHHH
Q 019344 292 AFGIVVIGL 300 (342)
Q Consensus 292 G~~li~~g~ 300 (342)
|++.+++-+
T Consensus 76 GvIg~Illi 84 (122)
T PF01102_consen 76 GVIGIILLI 84 (122)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444333
No 163
>PF07214 DUF1418: Protein of unknown function (DUF1418); InterPro: IPR010815 This family consists of several hypothetical Enterobacterial proteins of around 100 residues in length. Members of this family are often described as YbjC. In Escherichia coli the ybjC gene is located downstream of nfsA (which encodes the major oxygen-insensitive nitroreductase). It is thought that nfsA and ybjC form an operon an its promoter is a class I SoxS-dependent promoter []. The function of this family is unknown.
Probab=30.24 E-value=1.3e+02 Score=21.75 Aligned_cols=8 Identities=25% Similarity=0.962 Sum_probs=3.5
Q ss_pred HHHHHHHH
Q 019344 290 FLAFGIVV 297 (342)
Q Consensus 290 ~~G~~li~ 297 (342)
++|+.+.+
T Consensus 50 f~Gi~lMl 57 (96)
T PF07214_consen 50 FVGIGLML 57 (96)
T ss_pred HHHHHHHH
Confidence 34444444
No 164
>KOG1623 consensus Multitransmembrane protein [General function prediction only]
Probab=30.12 E-value=1.9e+02 Score=25.09 Aligned_cols=20 Identities=30% Similarity=0.335 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHhhccC
Q 019344 287 WLYFLAFGIVVIGLIIYSTT 306 (342)
Q Consensus 287 ~~~~~G~~li~~g~~l~~~~ 306 (342)
....+|..+-++=..++-..
T Consensus 188 ipN~iG~~l~~~QL~Ly~~y 207 (243)
T KOG1623|consen 188 IPNVLGFLLGLIQLILYFKY 207 (243)
T ss_pred cccHHHHHHHHHHHHHhhhc
Confidence 45668888887777777433
No 165
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=29.12 E-value=5.1e+02 Score=24.63 Aligned_cols=15 Identities=13% Similarity=0.286 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHhh
Q 019344 289 YFLAFGIVVIGLIIY 303 (342)
Q Consensus 289 ~~~G~~li~~g~~l~ 303 (342)
..++++++++.+.++
T Consensus 178 F~~a~~v~l~~i~~~ 192 (437)
T TIGR00939 178 FGTPCVVQLICIVCY 192 (437)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444444
No 166
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=29.04 E-value=3.4e+02 Score=22.62 Aligned_cols=24 Identities=29% Similarity=0.230 Sum_probs=16.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHh
Q 019344 167 LLGDVLVIAGTIFFATSNVGEEFF 190 (342)
Q Consensus 167 ~~G~~l~l~aa~~~a~~~v~~~~~ 190 (342)
..+....++|+++++++..+.||.
T Consensus 178 l~~~~~iiig~i~~~~~~~lkkk~ 201 (206)
T PF06570_consen 178 LPPWVYIIIGVIAFALRFYLKKKY 201 (206)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHh
Confidence 445666777888888876666653
No 167
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=28.40 E-value=5.2e+02 Score=24.57 Aligned_cols=23 Identities=17% Similarity=0.310 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHhhccCCCC
Q 019344 287 WLYFLAFGIVVIGLIIYSTTEKD 309 (342)
Q Consensus 287 ~~~~~G~~li~~g~~l~~~~~~~ 309 (342)
....+|.++++.|+.+|.+.+++
T Consensus 411 ~~~~~~~~~~~~g~~~y~~~~~~ 433 (468)
T TIGR03810 411 KYLLLSAILYAPGIYFYARARKE 433 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 46788888899999988764443
No 168
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=27.88 E-value=3.6e+02 Score=22.49 Aligned_cols=31 Identities=16% Similarity=0.337 Sum_probs=16.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhccchh
Q 019344 78 RVAWYWYLLLGFVDVQGNFLVNKAYQFSSIT 108 (342)
Q Consensus 78 ~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~ 108 (342)
|..+++.++.++.........+......++.
T Consensus 143 r~~~~k~~~~~~~~~~~w~~~~~~~~~lp~~ 173 (206)
T PF06570_consen 143 RPSWWKYILISVLAMVLWIVIFVLTSFLPPV 173 (206)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 4455555666665555544444444445544
No 169
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=27.69 E-value=84 Score=24.67 Aligned_cols=23 Identities=4% Similarity=-0.038 Sum_probs=13.9
Q ss_pred hhHHHHhHhhhHHHHHHHHHHHH
Q 019344 258 GATMFNLSLLTADMWAVVFRICF 280 (342)
Q Consensus 258 ~a~~~~~~~~~~pv~~~~~~~~~ 280 (342)
+....+...|+.|+++++++.++
T Consensus 73 slL~sA~LvYi~PL~~l~v~~~L 95 (150)
T COG3086 73 SLLKSALLVYIFPLVGLFLGAIL 95 (150)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666677766666655
No 170
>PF10754 DUF2569: Protein of unknown function (DUF2569); InterPro: IPR019690 This entry represents a protein that is conserved in bacteria. The function is not known, but several members are annotated as being YdgK or a homologue thereof and associated to the inner membrane. This signature also matches proteins that are described as transglutaminase-like enzymes, although this could not be confirmed.
Probab=27.65 E-value=2e+02 Score=22.68 Aligned_cols=27 Identities=0% Similarity=-0.041 Sum_probs=22.8
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHh
Q 019344 164 SRPLLGDVLVIAGTIFFATSNVGEEFF 190 (342)
Q Consensus 164 ~~~~~G~~l~l~aa~~~a~~~v~~~~~ 190 (342)
.......+..+.++..|.-|....||.
T Consensus 117 ~~~i~~l~~~li~a~IwipYf~~S~RV 143 (149)
T PF10754_consen 117 AEAIRELLRSLIAAAIWIPYFLRSKRV 143 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHh
Confidence 445678899999999999999988885
No 171
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=27.48 E-value=1.2e+02 Score=23.79 Aligned_cols=24 Identities=17% Similarity=0.084 Sum_probs=18.3
Q ss_pred cchhHHHHhhhhhHHHHHHHHHHH
Q 019344 105 SSITSVTLLDCCTIAWAIVLTWLF 128 (342)
Q Consensus 105 ~~~~~~~ii~~~~pi~~~il~~l~ 128 (342)
-+.-.++.+.+..|+++.+++.+.
T Consensus 72 kslL~sA~LvYi~PL~~l~v~~~L 95 (150)
T COG3086 72 KSLLKSALLVYIFPLVGLFLGAIL 95 (150)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567788899999988888764
No 172
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=26.63 E-value=91 Score=24.03 Aligned_cols=20 Identities=5% Similarity=0.032 Sum_probs=11.7
Q ss_pred HHHhHhhhHHHHHHHHHHHH
Q 019344 261 MFNLSLLTADMWAVVFRICF 280 (342)
Q Consensus 261 ~~~~~~~~~pv~~~~~~~~~ 280 (342)
..++..|+-|++.++.+.++
T Consensus 69 ~aa~l~Y~lPll~li~g~~l 88 (135)
T PF04246_consen 69 KAAFLVYLLPLLALIAGAVL 88 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666666654
No 173
>TIGR01167 LPXTG_anchor LPXTG-motif cell wall anchor domain. A common feature of this proteins containing this domain appears to be a high proportion of charged and zwitterionic residues immediatedly upstream of the LPXTG motif. This model differs from other descriptions of the LPXTG region by including a portion of that upstream charged region.
Probab=26.54 E-value=1e+02 Score=17.03 Aligned_cols=16 Identities=19% Similarity=0.355 Sum_probs=8.2
Q ss_pred cHHHHHHHHHHHHHHH
Q 019344 286 DWLYFLAFGIVVIGLI 301 (342)
Q Consensus 286 ~~~~~~G~~li~~g~~ 301 (342)
.+..++|.+++..+.+
T Consensus 11 ~~~~~~G~~l~~~~~~ 26 (34)
T TIGR01167 11 SLLLLLGLLLLGLGGL 26 (34)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455666644444333
No 174
>PF01914 MarC: MarC family integral membrane protein; InterPro: IPR002771 Members of this family are integral membrane proteins that includes the antibiotic resistance protein MarC. These proteins may be transporters. ; GO: 0016021 integral to membrane
Probab=26.21 E-value=3.7e+02 Score=22.48 Aligned_cols=25 Identities=16% Similarity=0.117 Sum_probs=16.1
Q ss_pred HhcccccHHHHHHHHHHH-HHHHhhc
Q 019344 280 FYHQKVDWLYFLAFGIVV-IGLIIYS 304 (342)
Q Consensus 280 ~~~e~~~~~~~~G~~li~-~g~~l~~ 304 (342)
+||-.++..++.|.++.. .|.=+..
T Consensus 64 ~fgIsl~af~IaGGiiL~~ia~~ml~ 89 (203)
T PF01914_consen 64 FFGISLPAFRIAGGIILFLIALEMLF 89 (203)
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHhC
Confidence 357777778888777665 5554443
No 175
>PRK12437 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=25.51 E-value=54 Score=28.83 Aligned_cols=21 Identities=14% Similarity=0.398 Sum_probs=18.1
Q ss_pred ccHHHHHHHHHHHHHHHhhcc
Q 019344 285 VDWLYFLAFGIVVIGLIIYST 305 (342)
Q Consensus 285 ~~~~~~~G~~li~~g~~l~~~ 305 (342)
+|..|+++..++++|+.+..+
T Consensus 235 ls~~Q~~sl~~i~~g~~~~~~ 255 (269)
T PRK12437 235 LRIAQVISIPLIIIGIILIIY 255 (269)
T ss_pred hhHHHHHHHHHHHHHHHHHHH
Confidence 689999999999999877644
No 176
>TIGR02587 putative integral membrane protein TIGR02587. Members of this family are found in Nostoc sp. PCC 7120, Agrobacterium tumefaciens, Sinorhizobium meliloti, and Gloeobacter violaceus in a conserved two-gene neighborhood. This family, as defined, includes some members of COG4711 but is narrower and strictly bacterial. Members appear to span the membrane seven times.
Probab=25.42 E-value=4.7e+02 Score=23.02 Aligned_cols=27 Identities=0% Similarity=-0.109 Sum_probs=17.2
Q ss_pred HHHHHHHHHHhcc---cccHHHHHHHHHHH
Q 019344 271 MWAVVFRICFYHQ---KVDWLYFLAFGIVV 297 (342)
Q Consensus 271 v~~~~~~~~~~~e---~~~~~~~~G~~li~ 297 (342)
+....+-.++|++ .-++.+++|-+++.
T Consensus 80 lv~S~~~L~lfgri~~~~pl~e~Lg~vivl 109 (271)
T TIGR02587 80 FVCSAAMLWLFGIITPETSLKEIVGKVAFQ 109 (271)
T ss_pred HHHHHHHHHHHccCCCCCCHHHHHHHHHHH
Confidence 3344444456666 45778888888775
No 177
>PF14851 FAM176: FAM176 family
Probab=25.40 E-value=1.1e+02 Score=24.46 Aligned_cols=8 Identities=13% Similarity=0.031 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 019344 293 FGIVVIGL 300 (342)
Q Consensus 293 ~~li~~g~ 300 (342)
.++.++.+
T Consensus 34 LlLtLcll 41 (153)
T PF14851_consen 34 LLLTLCLL 41 (153)
T ss_pred HHHHHHHH
Confidence 33333333
No 178
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=25.20 E-value=2.1e+02 Score=21.45 Aligned_cols=25 Identities=8% Similarity=0.279 Sum_probs=20.4
Q ss_pred cccchHHHHHHHHHHHhhhhhheec
Q 019344 130 GTRYSLWQLLGAALCVLGLGLVLLS 154 (342)
Q Consensus 130 ~e~~~~~~~~g~~l~~~Gv~l~~~~ 154 (342)
..|+++.+-.++.+.++|.+++..+
T Consensus 5 ~~KiN~~R~~al~lif~g~~vmy~g 29 (114)
T PF11023_consen 5 SSKINKIRTFALSLIFIGMIVMYIG 29 (114)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4578888899999999998887764
No 179
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=24.18 E-value=88 Score=19.66 Aligned_cols=11 Identities=36% Similarity=0.631 Sum_probs=4.8
Q ss_pred HHHHHhhccCC
Q 019344 297 VIGLIIYSTTE 307 (342)
Q Consensus 297 ~~g~~l~~~~~ 307 (342)
+.|+.+.+..+
T Consensus 15 lLg~~I~~~~K 25 (50)
T PF12606_consen 15 LLGLSICTTLK 25 (50)
T ss_pred HHHHHHHHHhh
Confidence 34444444433
No 180
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=23.90 E-value=6.9e+02 Score=24.42 Aligned_cols=51 Identities=12% Similarity=0.047 Sum_probs=24.1
Q ss_pred HhhhhhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Q 019344 11 WRSHVTLRTLYLLFLGQLVSF-TLALMSFTSSLIADLGVDAPVTQSAFAYFSL 62 (342)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~al-~~~~~~~~~~~~~~~~~~~p~~~~~~r~~~~ 62 (342)
|+..|+|++.. +.++.+++- -.........+...+...+|..+..+.....
T Consensus 4 ~aplr~~~Fr~-lw~a~~iS~lG~~~~~va~~wlv~~lt~S~~~valv~~a~~ 55 (524)
T PF05977_consen 4 FAPLRNRNFRR-LWIAQLISNLGDWMQTVALAWLVTQLTGSPLMVALVQAAST 55 (524)
T ss_pred cccccCchHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 34455555555 334444333 2333333333444433456777766655444
No 181
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.74 E-value=2.9e+02 Score=20.09 Aligned_cols=33 Identities=9% Similarity=0.072 Sum_probs=27.2
Q ss_pred HHHHHHHHHhcccchHHHHHHHHHHHhhhhhhe
Q 019344 120 WAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVL 152 (342)
Q Consensus 120 ~~~il~~l~l~e~~~~~~~~g~~l~~~Gv~l~~ 152 (342)
+-+.++.+.+||++++..+.+..+...|+.++.
T Consensus 82 iFv~Fsvfyl~epl~~~~l~a~~~i~gav~fiF 114 (116)
T COG3169 82 IFVPFSVFYLKEPLRWNYLWAFLLILGAVYFIF 114 (116)
T ss_pred HHHHHHHHHHcCcchHHHHHHHHHHHHHHHHhc
Confidence 335678889999999999999998888877654
No 182
>PHA03049 IMV membrane protein; Provisional
Probab=23.35 E-value=82 Score=20.94 Aligned_cols=22 Identities=32% Similarity=0.631 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHhhccCCCCC
Q 019344 289 YFLAFGIVVIGLIIYSTTEKDL 310 (342)
Q Consensus 289 ~~~G~~li~~g~~l~~~~~~~~ 310 (342)
.++++.++++|..+|-...+++
T Consensus 6 ~l~iICVaIi~lIvYgiYnkk~ 27 (68)
T PHA03049 6 ILVIICVVIIGLIVYGIYNKKT 27 (68)
T ss_pred HHHHHHHHHHHHHHHHHHhccc
Confidence 3556666777777775444433
No 183
>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).
Probab=23.30 E-value=94 Score=24.84 Aligned_cols=16 Identities=25% Similarity=0.422 Sum_probs=8.5
Q ss_pred HHHHHHHhhccCCCCC
Q 019344 295 IVVIGLIIYSTTEKDL 310 (342)
Q Consensus 295 li~~g~~l~~~~~~~~ 310 (342)
+.++|++-|.+.++.+
T Consensus 8 ~~~~~~w~yr~rpr~p 23 (156)
T PF08372_consen 8 LFLIGLWNYRFRPRHP 23 (156)
T ss_pred HHHHHHhccccCCCCC
Confidence 4456666665544433
No 184
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=23.19 E-value=6.6e+02 Score=23.92 Aligned_cols=81 Identities=19% Similarity=0.120 Sum_probs=43.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHhhhhhHHH-HHHHHHHHhcccchHHHHHHHHHHHhhhhhhe
Q 019344 74 RQRLRVAWYWYLLLGFVDVQGNFLVNKAYQFSSITSVTLLDCCTIAW-AIVLTWLFLGTRYSLWQLLGAALCVLGLGLVL 152 (342)
Q Consensus 74 ~~~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~ii~~~~pi~-~~il~~l~l~e~~~~~~~~g~~l~~~Gv~l~~ 152 (342)
.++.+-+...+++.|+.....+.+...=-+|.+-..+..+.+...+. ......-++|.+-...-..+++.++-|++.+.
T Consensus 318 ~~~~~iHpiQY~LVGlAl~lFYlLLLSlSEhi~F~~AYliAa~a~i~Li~~Y~~~vl~~~k~~~~~~~~L~~LY~~Ly~l 397 (430)
T PF06123_consen 318 LSKLRIHPIQYLLVGLALVLFYLLLLSLSEHIGFNLAYLIAALACIGLISLYLSSVLKSWKRGLIFAGLLAALYGFLYVL 397 (430)
T ss_pred HhcCcccHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 34456678888888888887755554444677777766655433322 22233333443333333444444444554444
Q ss_pred ec
Q 019344 153 LS 154 (342)
Q Consensus 153 ~~ 154 (342)
..
T Consensus 398 Lq 399 (430)
T PF06123_consen 398 LQ 399 (430)
T ss_pred HH
Confidence 43
No 185
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]
Probab=23.00 E-value=4.8e+02 Score=25.20 Aligned_cols=49 Identities=10% Similarity=0.125 Sum_probs=32.0
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHhhccCCh---HHHHHHHHHHHHHHHH
Q 019344 164 SRPLLGDVLVIAGTIFFATSNVGEEFFVKKKDR---VEVVCMIGVYGLLVSA 212 (342)
Q Consensus 164 ~~~~~G~~l~l~aa~~~a~~~v~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 212 (342)
....+|.+...++.++-....++.+++.+..+. ..........+...+.
T Consensus 284 ~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~ 335 (493)
T KOG1330|consen 284 ATLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSI 335 (493)
T ss_pred cchhhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHH
Confidence 455788888888999999999999887654322 2233333345555553
No 186
>PF11295 DUF3096: Protein of unknown function (DUF3096); InterPro: IPR021446 This entry is represented by the archaeal Thermoproteus tenax spherical virus 1, Orf18. The characteristics of the protein distribution suggest prophage matches and lateral genetic transfer in addition to the phage matches.
Probab=22.95 E-value=1.2e+02 Score=17.85 Aligned_cols=31 Identities=26% Similarity=0.351 Sum_probs=16.9
Q ss_pred HHHHHHHHHHhcccccHHHHHHHHHHHHHHH
Q 019344 271 MWAVVFRICFYHQKVDWLYFLAFGIVVIGLI 301 (342)
Q Consensus 271 v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~ 301 (342)
+.+.+.+.+++--+=-...++|.-+++.|+.
T Consensus 2 i~aliaGiLiLi~PrllnyiVaiyLI~~G~l 32 (39)
T PF11295_consen 2 ILALIAGILILIMPRLLNYIVAIYLIVIGLL 32 (39)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555444444455666666666654
No 187
>PRK10921 twin-arginine protein translocation system subunit TatC; Provisional
Probab=22.88 E-value=1.3e+02 Score=26.39 Aligned_cols=17 Identities=12% Similarity=-0.003 Sum_probs=7.5
Q ss_pred hhhhhhhHHHHHHHHHH
Q 019344 12 RSHVTLRTLYLLFLGQL 28 (342)
Q Consensus 12 ~~~~~~~~~~~~~~~~~ 28 (342)
+...-|+++.-.+++.+
T Consensus 12 HL~ELR~Rli~~li~~~ 28 (258)
T PRK10921 12 HLIELRKRLLNCIIAVL 28 (258)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344555544444433
No 188
>PF01654 Bac_Ubq_Cox: Bacterial Cytochrome Ubiquinol Oxidase; InterPro: IPR002585 These proteins are cytochrome bd type terminal oxidases that catalyse quinol dependent, Na+ independent oxygen uptake []. Members of this family are integral membrane proteins and contain a protoheame IX centre B558. Cytochrome bd may play an important role in microaerobic nitrogen fixation in the enteric bacterium Klebsiella pneumoniae, where it is expressed under all conditions that permit diazotrophy []. Subunit I binds a single b-haem, through ligands at His186 and Met393 (using P0ABJ9 from SWISSPROT numbering). In addition His19 is a ligand for the haem b found in subunit II (IPR003317 from INTERPRO).; GO: 0016020 membrane
Probab=22.18 E-value=6.9e+02 Score=23.80 Aligned_cols=39 Identities=18% Similarity=0.118 Sum_probs=23.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHH
Q 019344 166 PLLGDVLVIAGTIFFATSNVGEEFFVKKKDRVEVVCMIG 204 (342)
Q Consensus 166 ~~~G~~l~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~ 204 (342)
...|..+++++++...+..-..-+...+..|..+.++..
T Consensus 214 ~~~~~~~~~i~~~~~~~~G~~~g~~v~~~QP~K~AA~Eg 252 (436)
T PF01654_consen 214 LKIGLVIGLIAAILQPFSGDWQGREVAEYQPMKLAAMEG 252 (436)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHhCChHHHhhhc
Confidence 356666666666666665555445555566666666544
No 189
>PF03631 Virul_fac_BrkB: Virulence factor BrkB; InterPro: IPR017039 This entry represents the uncharacterised protein family UPF0761. It includes the E. coli gene product of yihY, and was previously thought to be a family of tRNA-processing ribonuclease BN proteins []. This has been shown to be incorrect [].; GO: 0004540 ribonuclease activity
Probab=22.15 E-value=5.1e+02 Score=22.25 Aligned_cols=10 Identities=0% Similarity=-0.027 Sum_probs=5.7
Q ss_pred HHHHHHHHHH
Q 019344 53 TQSAFAYFSL 62 (342)
Q Consensus 53 ~~~~~r~~~~ 62 (342)
.....|..+.
T Consensus 160 ~~~~~~~~~~ 169 (260)
T PF03631_consen 160 LWNLIRWLVS 169 (260)
T ss_pred HHHHHHHHHH
Confidence 3566676544
No 190
>PF12822 DUF3816: Protein of unknown function (DUF3816); InterPro: IPR024529 Energy-coupling factor (ECF) transporters consist of a substrate-specific component and an energy-coupling module []. The substrate-binding component is a small integral membrane protein which captures specific substrates and forms an active transporter in the presence of the energy-coupling AT module. The energy coupling module is composed of an ATPase typical of the ATP binding cassette (ABC) superfamily and a characteristic transmembrane protein. Unlike the ABC transporters, an energy coupling module can be shared between multiple different substrate-binding components. This entry represents the substrate-specific component from a number of different ECF transporters.; PDB: 3P5N_A.
Probab=22.03 E-value=4e+02 Score=21.05 Aligned_cols=27 Identities=19% Similarity=0.106 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 019344 22 LLFLGQLVSFTLALMSFTSSLIADLGV 48 (342)
Q Consensus 22 ~~~~~~~~al~~~~~~~~~~~~~~~~~ 48 (342)
++.+|-..+.+.+...-..+.+...+.
T Consensus 39 ~~l~Gp~~G~~~g~i~~il~~l~~~~~ 65 (172)
T PF12822_consen 39 GFLLGPVWGALVGFISDILSFLIFGGG 65 (172)
T ss_dssp HTTS-HHHHHHHHHHHHHHHHHH-TTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 455565566666666555555554333
No 191
>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase. This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.
Probab=21.73 E-value=5.7e+02 Score=22.66 Aligned_cols=60 Identities=13% Similarity=0.330 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHhhccchhHHHHhhhhhHHHHHHHHHHHhcccchHHHHH
Q 019344 79 VAWYWYLLLGFVDVQGNFLVN---KAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLL 139 (342)
Q Consensus 79 ~~~~~~~~~g~~~~~~~~~~~---~al~~~~~~~~~ii~~~~pi~~~il~~l~l~e~~~~~~~~ 139 (342)
++...++..|+.+...-++|. .-++|.+.++..+.....|+.+....+ ......++..++
T Consensus 106 ~~~~~~l~lg~~~~~~~~~Yt~gP~~l~y~gLGE~~v~i~~G~l~v~g~~y-vq~~~~~~~~ll 168 (284)
T TIGR00751 106 SDLFWFIALGALCIAAAITYTVGSKPYGYAGLGDISVLVFFGPLAVLGTQY-LQAHRVDWVGIL 168 (284)
T ss_pred hhhHHHHHHHHHHHHHhHhhcCCCCccccCchHHHHHHHHHHHHHHHHHHH-HhcCCCCHHHHH
Confidence 334456677776665544443 367889999999888888887755433 334455555444
No 192
>PRK14774 lipoprotein signal peptidase; Provisional
Probab=21.73 E-value=1.5e+02 Score=24.46 Aligned_cols=8 Identities=0% Similarity=-0.089 Sum_probs=2.9
Q ss_pred ccccCCcc
Q 019344 324 QYQILDNE 331 (342)
Q Consensus 324 ~~~~~~~~ 331 (342)
|+...+..
T Consensus 170 ~~~~~~~~ 177 (185)
T PRK14774 170 ERKANGSG 177 (185)
T ss_pred cccCCCCC
Confidence 33333333
No 193
>PF01864 DUF46: Putative integral membrane protein DUF46; InterPro: IPR002726 This archaebacterial protein has no known function. It contains several predicted transmembrane regions, suggesting it is an integral membrane protein.
Probab=21.44 E-value=3.4e+02 Score=22.20 Aligned_cols=36 Identities=17% Similarity=0.028 Sum_probs=25.3
Q ss_pred ccchhh------HHhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 019344 4 NAPINS------WWRSHVTLRTLYLLFLGQLVSFTLALMSFT 39 (342)
Q Consensus 4 ~~~~~~------~~~~~~~~~~~~~~~~~~~~al~~~~~~~~ 39 (342)
..|+|- .+|.+.+.|+|+|++.|.++..+.+.....
T Consensus 28 ~~PiD~G~~~~DGrRilGdgKTwrG~i~gvl~g~l~g~i~~~ 69 (175)
T PF01864_consen 28 GRPIDFGKTFRDGRRILGDGKTWRGFIGGVLAGTLVGIIQGL 69 (175)
T ss_pred CCcccCCCccCCCCEecCCCCeEEeeeHHHHHHHHHHHHHHH
Confidence 456662 345667789999999998877777665433
No 194
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=21.39 E-value=1.5e+02 Score=22.82 Aligned_cols=42 Identities=19% Similarity=0.149 Sum_probs=24.0
Q ss_pred chhHHHHhhhhhHHHHHHHHHHHhcccchHHHHHHHHHHHhhh
Q 019344 106 SITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGL 148 (342)
Q Consensus 106 ~~~~~~ii~~~~pi~~~il~~l~l~e~~~~~~~~g~~l~~~Gv 148 (342)
....++.+.+..|++..+++.++ ...+...+..+++.+++|.
T Consensus 66 ~~~~aa~l~Y~lPll~li~g~~l-~~~~~~~e~~~~l~~l~~l 107 (135)
T PF04246_consen 66 SLLKAAFLVYLLPLLALIAGAVL-GSYLGGSELWAILGGLLGL 107 (135)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 34456777888888887777653 3444433444444444333
No 195
>PF06166 DUF979: Protein of unknown function (DUF979); InterPro: IPR009323 This family consists of several putative bacterial membrane proteins. The function of this family is unclear.
Probab=20.98 E-value=3.8e+02 Score=23.99 Aligned_cols=32 Identities=9% Similarity=0.147 Sum_probs=19.3
Q ss_pred HHHHHHH-hcccccHHHHHHHHHHHHHHHhhccC
Q 019344 274 VVFRICF-YHQKVDWLYFLAFGIVVIGLIIYSTT 306 (342)
Q Consensus 274 ~~~~~~~-~~e~~~~~~~~G~~li~~g~~l~~~~ 306 (342)
.+++..| +|+ .-+..+.|..+++.++.-....
T Consensus 36 ~llg~~F~~G~-~lp~~~~G~lvl~m~~la~~~~ 68 (308)
T PF06166_consen 36 GLLGLIFIFGD-YLPPFVVGILVLVMALLAGFGQ 68 (308)
T ss_pred HHHHHHHHcCc-cchhHHHHHHHHHHHHHHHcCC
Confidence 3444444 455 4556788888888777655443
No 196
>PRK01636 ccrB camphor resistance protein CrcB; Provisional
Probab=20.92 E-value=3.7e+02 Score=20.24 Aligned_cols=46 Identities=11% Similarity=-0.007 Sum_probs=28.0
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Q 019344 49 DAPVTQSAFAYFSLALVYGGVLLYRRQRLRVAWYWYLLLGFVDVQG 94 (342)
Q Consensus 49 ~~p~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 94 (342)
.-|+.....+.+.++++-+...+..+....++++..+..|+++...
T Consensus 16 ~fP~gTl~VNi~G~fllG~l~~~~~~~~~~~~~~~~l~tGf~GgfT 61 (118)
T PRK01636 16 GFPLDIFVANVVAAFLLGLTTSLHKRDKISQYVHLMIGTGIMGGLS 61 (118)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHhcccc
Confidence 3477766666665544433333322334456778888899998887
No 197
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=20.91 E-value=1.8e+02 Score=18.15 Aligned_cols=39 Identities=18% Similarity=0.372 Sum_probs=15.6
Q ss_pred hhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019344 7 INSWWRSHVTLRTLYLLFLGQLVSFTLALMSFTSSLIAD 45 (342)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~ 45 (342)
++.+++.+++-++-+.-..|.+.-+++.........+..
T Consensus 2 ~s~~~~~~~~f~~nk~a~~gl~il~~~vl~ai~~p~~~p 40 (56)
T PF12911_consen 2 RSPWKDAWRRFRRNKLAVIGLIILLILVLLAIFAPFISP 40 (56)
T ss_pred CCHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHcCC
Confidence 334444444333333333343333334344344444433
No 198
>PF15108 TMEM37: Voltage-dependent calcium channel gamma-like subunit protein family
Probab=20.82 E-value=3.1e+02 Score=21.90 Aligned_cols=56 Identities=16% Similarity=0.327 Sum_probs=33.1
Q ss_pred HHHHHHHHhhhhhheecCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 019344 138 LLGAALCVLGLGLVLLSDAGGDGGGGSRPLLGDVLVIAGTIFFATSNVGEEFFVKK 193 (342)
Q Consensus 138 ~~g~~l~~~Gv~l~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~~~~~~~ 193 (342)
-++++.++.|.=+++.++.-++.........|..+.+.+.+..+......-.+.++
T Consensus 92 slAVV~AIFGLElLmvSQvcEd~~SrrKWamGs~LlLvsfvlSs~GllsFviLL~~ 147 (184)
T PF15108_consen 92 SLAVVVAIFGLELLMVSQVCEDAHSRRKWAMGSVLLLVSFVLSSGGLLSFVILLRN 147 (184)
T ss_pred HHHHHHHHHhHHHHHHHHHHhcchhhhhhhhhhHHHHHHHHHhcccHHHHHHHHhc
Confidence 44556666676666655432333344666788888887777766655444444444
No 199
>COG4329 Predicted membrane protein [Function unknown]
Probab=20.77 E-value=1.1e+02 Score=23.53 Aligned_cols=24 Identities=21% Similarity=0.310 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCC
Q 019344 288 LYFLAFGIVVIGLIIYSTTEKDLN 311 (342)
Q Consensus 288 ~~~~G~~li~~g~~l~~~~~~~~~ 311 (342)
....|+.++++|.+++.+.+.|.+
T Consensus 136 flvlgalmviiG~v~l~rgk~~~~ 159 (160)
T COG4329 136 FLVLGALMVIIGLVVLFRGKLKSP 159 (160)
T ss_pred HHHHHHHHHHHHHHheeeccccCC
Confidence 457899999999999998876654
No 200
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=20.73 E-value=99 Score=20.27 Aligned_cols=22 Identities=18% Similarity=0.347 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHhhccCCCCCC
Q 019344 290 FLAFGIVVIGLIIYSTTEKDLN 311 (342)
Q Consensus 290 ~~G~~li~~g~~l~~~~~~~~~ 311 (342)
.+-+.++.+|++.+.+.++++.
T Consensus 15 t~~~~l~fiavi~~ayr~~~K~ 36 (60)
T COG4736 15 TIAFTLFFIAVIYFAYRPGKKG 36 (60)
T ss_pred HHHHHHHHHHHHHHHhcccchh
Confidence 3445566667776666554443
No 201
>CHL00196 psbY photosystem II protein Y; Provisional
Probab=20.58 E-value=1.3e+02 Score=17.35 Aligned_cols=19 Identities=21% Similarity=0.156 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 019344 168 LGDVLVIAGTIFFATSNVG 186 (342)
Q Consensus 168 ~G~~l~l~aa~~~a~~~v~ 186 (342)
.-++.-++.+.+||+|++.
T Consensus 6 liVl~Pil~A~~Wa~fNIg 24 (36)
T CHL00196 6 LVIAAPVLAAASWALFNIG 24 (36)
T ss_pred HHHHHHHHHHHHHHHHHhH
Confidence 3456778899999999885
No 202
>COG3247 HdeD Uncharacterized conserved protein [Function unknown]
Probab=20.45 E-value=5e+02 Score=21.47 Aligned_cols=18 Identities=22% Similarity=0.224 Sum_probs=11.2
Q ss_pred HHHHHHHHHhhhhhheec
Q 019344 137 QLLGAALCVLGLGLVLLS 154 (342)
Q Consensus 137 ~~~g~~l~~~Gv~l~~~~ 154 (342)
-..|++=.++|++++..|
T Consensus 135 ii~Gvl~ii~g~ill~~P 152 (185)
T COG3247 135 IISGVLGIIAGLILLFNP 152 (185)
T ss_pred HHHHHHHHHHHHHHHHcc
Confidence 455556666777777663
No 203
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=20.24 E-value=5e+02 Score=21.48 Aligned_cols=48 Identities=15% Similarity=0.032 Sum_probs=26.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHhhhhhHHHHHHHHHHH
Q 019344 78 RVAWYWYLLLGFVDVQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLF 128 (342)
Q Consensus 78 ~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~ii~~~~pi~~~il~~l~ 128 (342)
|..++++++..........+.+.+-.+.|.+.-- .+.|+...+++...
T Consensus 158 r~~~~K~~lv~~~sm~lWi~v~i~t~~lPtslN~---~L~pi~l~IiGav~ 205 (226)
T COG4858 158 RPGTWKYLLVAVLSMLLWIAVMIATVFLPTSLNP---QLPPIALTIIGAVI 205 (226)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHhhCCCcCCc---CCchHHHHHHHHHH
Confidence 4455666666666666655555666777765432 34455554444433
Done!