Query 019344
Match_columns 342
No_of_seqs 189 out of 1758
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 14:38:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019344.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019344hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 99.0 1E-09 3.5E-14 84.5 6.9 66 242-307 39-105 (137)
2 3b5d_A Multidrug transporter E 98.7 4.6E-07 1.6E-11 67.2 12.6 70 86-155 34-105 (110)
3 3b5d_A Multidrug transporter E 98.6 2.3E-06 8E-11 63.4 13.8 66 242-307 39-105 (110)
4 2i68_A Protein EMRE; transmemb 98.5 2.3E-07 8E-12 71.3 8.1 70 86-155 34-105 (137)
5 3l1l_A Arginine/agmatine antip 78.6 37 0.0013 30.5 13.4 42 270-311 391-432 (445)
6 3rko_J NADH-quinone oxidoreduc 52.9 66 0.0023 25.4 7.9 34 274-307 127-162 (184)
7 2zxe_G FXYD10, phospholemman-l 22.4 58 0.002 21.2 2.4 19 289-307 24-42 (74)
8 2l2t_A Receptor tyrosine-prote 21.5 83 0.0028 18.3 2.7 11 296-306 26-36 (44)
9 2ks1_B Epidermal growth factor 19.7 93 0.0032 18.1 2.7 11 296-306 27-37 (44)
10 1pw4_A Glycerol-3-phosphate tr 18.0 4.7E+02 0.016 22.5 14.4 163 171-341 66-242 (451)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.97 E-value=1e-09 Score=84.52 Aligned_cols=66 Identities=11% Similarity=0.096 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHhH-hhhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHhhccCC
Q 019344 242 SSFMFYTLAPFVLKLSGATMFNLS-LLTADMWAVVFRICFYHQKVDWLYFLAFGIVVIGLIIYSTTE 307 (342)
Q Consensus 242 ~~~~~~~~~~~~~~~~~a~~~~~~-~~~~pv~~~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~ 307 (342)
+..++|.++.+++++.+...+... ..+.|+++.++++++|+|++++.+++|+++|++|+++....+
T Consensus 39 ~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 39 CYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp HHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 677778999999999999977666 789999999999999999999999999999999999988654
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.67 E-value=4.6e-07 Score=67.23 Aligned_cols=70 Identities=17% Similarity=0.297 Sum_probs=61.8
Q ss_pred HHHHHH-HHHHHHHHHHhhccchhHHHHh-hhhhHHHHHHHHHHHhcccchHHHHHHHHHHHhhhhhheecC
Q 019344 86 LLGFVD-VQGNFLVNKAYQFSSITSVTLL-DCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSD 155 (342)
Q Consensus 86 ~~g~~~-~~~~~~~~~al~~~~~~~~~ii-~~~~pi~~~il~~l~l~e~~~~~~~~g~~l~~~Gv~l~~~~~ 155 (342)
+.++.. ...+.++..++++.|.+.+..+ .++.|+++.+++.+++||++++.+++|+.+.+.|++++...+
T Consensus 34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 344444 4448889999999999999988 799999999999999999999999999999999999987754
No 3
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.57 E-value=2.3e-06 Score=63.38 Aligned_cols=66 Identities=11% Similarity=0.096 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHhH-hhhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHhhccCC
Q 019344 242 SSFMFYTLAPFVLKLSGATMFNLS-LLTADMWAVVFRICFYHQKVDWLYFLAFGIVVIGLIIYSTTE 307 (342)
Q Consensus 242 ~~~~~~~~~~~~~~~~~a~~~~~~-~~~~pv~~~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~ 307 (342)
+...++.++.+++++.+...+-.. ..+.|+++.+++++++||++++.+++|..+|+.|+++....+
T Consensus 39 ~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 39 CYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 566677888889999998877665 789999999999999999999999999999999999987643
No 4
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.55 E-value=2.3e-07 Score=71.33 Aligned_cols=70 Identities=17% Similarity=0.292 Sum_probs=50.6
Q ss_pred HHHHHHH-HHHHHHHHHhhccchhHHHHh-hhhhHHHHHHHHHHHhcccchHHHHHHHHHHHhhhhhheecC
Q 019344 86 LLGFVDV-QGNFLVNKAYQFSSITSVTLL-DCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSD 155 (342)
Q Consensus 86 ~~g~~~~-~~~~~~~~al~~~~~~~~~ii-~~~~pi~~~il~~l~l~e~~~~~~~~g~~l~~~Gv~l~~~~~ 155 (342)
+.+++.. ..++++..++++.|++.+..+ .++.|+++++++.++++|++++.+++|+.+.++|++++...+
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 3444444 448999999999999999988 899999999999999999999999999999999999987654
No 5
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=78.64 E-value=37 Score=30.49 Aligned_cols=42 Identities=12% Similarity=0.074 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHHhhccCCCCCC
Q 019344 270 DMWAVVFRICFYHQKVDWLYFLAFGIVVIGLIIYSTTEKDLN 311 (342)
Q Consensus 270 pv~~~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~~~~ 311 (342)
++++.+...+..-.........|..+++.|+.+|...+++++
T Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~~~~ 432 (445)
T 3l1l_A 391 TTIAFLYCIWAVVGSGAKEVMWSFVTLMVITAMYALNYNRLH 432 (445)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 344444444333222223456688888888888876554443
No 6
>3rko_J NADH-quinone oxidoreductase subunit J; complex I, proton pump, membrane protein, Na ubiquinone, cytoplasmic membrane; HET: LFA CA7; 3.00A {Escherichia coli}
Probab=52.95 E-value=66 Score=25.36 Aligned_cols=34 Identities=9% Similarity=0.033 Sum_probs=24.6
Q ss_pred HHHHHHHhcccccHHHHHHHHHHH--HHHHhhccCC
Q 019344 274 VVFRICFYHQKVDWLYFLAFGIVV--IGLIIYSTTE 307 (342)
Q Consensus 274 ~~~~~~~~~e~~~~~~~~G~~li~--~g~~l~~~~~ 307 (342)
--+|..++++-.-+.++.+..+.+ +|.....+++
T Consensus 127 ~~iG~~Lft~Y~lpFElaSvlLLvAmIGAIvLarr~ 162 (184)
T 3rko_J 127 KAVGITLFGPYVLAVELASMLLLAGLVVAFHVGREE 162 (184)
T ss_dssp HHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 357788889999999999998875 4555555433
No 7
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=22.43 E-value=58 Score=21.22 Aligned_cols=19 Identities=32% Similarity=0.454 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHhhccCC
Q 019344 289 YFLAFGIVVIGLIIYSTTE 307 (342)
Q Consensus 289 ~~~G~~li~~g~~l~~~~~ 307 (342)
.++++++.++|+++....+
T Consensus 24 LifA~vLfi~GI~iilS~k 42 (74)
T 2zxe_G 24 LIVAAVLCVIGIIILLAGK 42 (74)
T ss_dssp HHHHHHHHHHHHHHHTTTC
T ss_pred chhHHHHHHHHHHHHHcCc
Confidence 3455666777877776654
No 8
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=21.50 E-value=83 Score=18.33 Aligned_cols=11 Identities=18% Similarity=0.380 Sum_probs=4.5
Q ss_pred HHHHHHhhccC
Q 019344 296 VVIGLIIYSTT 306 (342)
Q Consensus 296 i~~g~~l~~~~ 306 (342)
+..+.+++.+.
T Consensus 26 i~~~~~~~~RR 36 (44)
T 2l2t_A 26 VGLTFAVYVRR 36 (44)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHhhh
Confidence 33344444443
No 9
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=19.68 E-value=93 Score=18.09 Aligned_cols=11 Identities=18% Similarity=0.525 Sum_probs=4.4
Q ss_pred HHHHHHhhccC
Q 019344 296 VVIGLIIYSTT 306 (342)
Q Consensus 296 i~~g~~l~~~~ 306 (342)
+..+.+++.+.
T Consensus 27 i~~~~~~~~RR 37 (44)
T 2ks1_B 27 VALGIGLFMRR 37 (44)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHhhh
Confidence 33334444443
No 10
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=18.01 E-value=4.7e+02 Score=22.55 Aligned_cols=163 Identities=9% Similarity=-0.024 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHH----hhhcccccccccchhHHHHHHHHHHHHHHH
Q 019344 171 VLVIAGTIFFATSNVGEEFFVKKKDRVEVVCMIGVYGLLVSAVQLS----ILELKSLESVEWSTNILLGFAGYAASSFMF 246 (342)
Q Consensus 171 ~l~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (342)
.+.....+.+++.....-++.++.+.............+....... ..+. +.....-...+++ .+...
T Consensus 66 ~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~-------~~l~~~~~l~G~~-~~~~~ 137 (451)
T 1pw4_A 66 FALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSI-------AVMFVLLFLCGWF-QGMGW 137 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSS-------SHHHHHHHHHHHH-HHHTH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhccccH-------HHHHHHHHHHHHH-hhhcc
Q ss_pred HHHHHHHHhhhhhH-------HHHhHhhhHHHHHHHHHHHHhc---ccccHHHHHHHHHHHHHHHhhccCCCCCCCCCcc
Q 019344 247 YTLAPFVLKLSGAT-------MFNLSLLTADMWAVVFRICFYH---QKVDWLYFLAFGIVVIGLIIYSTTEKDLNPMPDL 316 (342)
Q Consensus 247 ~~~~~~~~~~~~a~-------~~~~~~~~~pv~~~~~~~~~~~---e~~~~~~~~G~~li~~g~~l~~~~~~~~~~~~~~ 316 (342)
-.......+..+.. .......+..+++..++-.+.+ ..-....+.+...++..+.....-++++++.+.+
T Consensus 138 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (451)
T 1pw4_A 138 PPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLP 217 (451)
T ss_dssp HHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCC
T ss_pred chHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCC
Q ss_pred cccccccccccCCcccccCCCCCCC
Q 019344 317 ENRISDLQYQILDNENVASTNEPSD 341 (342)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (342)
++++.+.+.+...++++++.....+
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (451)
T 1pw4_A 218 PIEEYKNDYPDDYNEKAEQELTAKQ 242 (451)
T ss_dssp SCTTTCCC-------------CCTH
T ss_pred Chhhhcccccccchhhhhccccccc
Done!