Query 019344
Match_columns 342
No_of_seqs 189 out of 1758
Neff 9.7
Searched_HMMs 13730
Date Mon Mar 25 14:38:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019344.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/019344hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 77.2 18 0.0013 29.8 16.2 25 177-201 69-93 (447)
2 d2r6gf1 e.70.1.1 (F:13-260) Ma 28.7 86 0.0063 24.0 7.3 64 83-150 4-67 (248)
3 d2e74g1 f.23.26.1 (G:9-35) Pet 26.9 31 0.0022 15.9 2.6 18 167-184 2-19 (27)
4 d1iwga8 f.35.1.1 (A:513-566,A: 18.1 1.6E+02 0.012 21.6 6.9 28 271-298 95-122 (222)
5 d1iwga7 f.35.1.1 (A:7-37,A:331 5.1 2.8E+02 0.02 19.7 3.7 29 271-299 77-105 (199)
6 d2axtt1 f.23.34.1 (T:1-30) Pho 3.9 2.5E+02 0.018 12.9 3.5 14 272-285 14-27 (30)
7 d1fftb2 f.17.2.1 (B:27-117) Cy 3.8 1.7E+02 0.012 18.1 1.2 14 294-307 29-42 (91)
8 d2nwwa1 f.49.1.1 (A:12-416) Pr 3.4 9.3E+02 0.068 18.8 6.2 44 17-63 3-46 (405)
9 d2iuba2 f.17.3.1 (A:286-349) M 3.4 3.8E+02 0.028 14.9 2.5 17 289-306 44-60 (64)
10 d1gl4a1 d.22.1.2 (A:399-631) D 3.0 1.4E+02 0.01 22.5 0.1 33 99-132 42-74 (233)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=77.21 E-value=18 Score=29.84 Aligned_cols=25 Identities=8% Similarity=-0.021 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHhhccCChHHHHH
Q 019344 177 TIFFATSNVGEEFFVKKKDRVEVVC 201 (342)
Q Consensus 177 a~~~a~~~v~~~~~~~~~~~~~~~~ 201 (342)
.+.+++.....-++.++.++.....
T Consensus 69 ~~~~~~~~~~~G~l~Dr~g~r~~~~ 93 (447)
T d1pw4a_ 69 SIAYGFSKFIMGSVSDRSNPRVFLP 93 (447)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCchHHHH
Confidence 3444444555555555555554443
No 2
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=28.74 E-value=86 Score=24.02 Aligned_cols=64 Identities=16% Similarity=0.270 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccchhHHHHhhhhhHHHHHHHHHHHhcccchHHHHHHHHHHHhhhhh
Q 019344 83 WYLLLGFVDVQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGL 150 (342)
Q Consensus 83 ~~~~~g~~~~~~~~~~~~al~~~~~~~~~ii~~~~pi~~~il~~l~l~e~~~~~~~~g~~l~~~Gv~l 150 (342)
++.++|++..+..++....+...+...+. ..-+.+.++.++++.+|.-+.+++.=.++++.++.
T Consensus 4 K~~ll~l~~a~~~~~~~~~~~~~~~~~a~----~~~~~~~~~~~vy~s~r~~p~kyi~PG~~~l~~Fv 67 (248)
T d2r6gf1 4 KWSVLGLLGLLVGYLVVLMYAQGEYLFAI----TTLILSSAGLYIFANRKAYAWRYVYPGMAGMGLFV 67 (248)
T ss_dssp THHHHHHHHHHHHHTHHHHHGGGCHHHHH----HHHHHHHHHHHHHSSSCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHcchHHHHH----HHHHHHHheEEEEEccCccceehhhhHHHHHHHHH
Confidence 35566666666655555555544443332 34455666677788888777777665555554443
No 3
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=26.85 E-value=31 Score=15.93 Aligned_cols=18 Identities=33% Similarity=0.635 Sum_probs=14.3
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 019344 167 LLGDVLVIAGTIFFATSN 184 (342)
Q Consensus 167 ~~G~~l~l~aa~~~a~~~ 184 (342)
.+|.+.+-+++++||.|.
T Consensus 2 vlgli~~tl~glf~aayq 19 (27)
T d2e74g1 2 VLGLVFATLGGLFYAAYQ 19 (27)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred eeeehHHHHHHHHHHHHH
Confidence 367788888889998874
No 4
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=18.11 E-value=1.6e+02 Score=21.64 Aligned_cols=28 Identities=7% Similarity=0.061 Sum_probs=21.6
Q ss_pred HHHHHHHHHHhcccccHHHHHHHHHHHH
Q 019344 271 MWAVVFRICFYHQKVDWLYFLAFGIVVI 298 (342)
Q Consensus 271 v~~~~~~~~~~~e~~~~~~~~G~~li~~ 298 (342)
+.+.+.+..+.+.+++....+|.++.+.
T Consensus 95 ~~~~~~~l~~~g~~~~~~~~~g~i~l~G 122 (222)
T d1iwga8 95 VIGALLAATFRGLTNDVYFQVGLLTTIG 122 (222)
T ss_dssp HHHHHHHHHHTTCCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCchhhhhcccccchhh
Confidence 4566677778899999999888887653
No 5
>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=5.07 E-value=2.8e+02 Score=19.74 Aligned_cols=29 Identities=3% Similarity=0.048 Sum_probs=18.4
Q ss_pred HHHHHHHHHHhcccccHHHHHHHHHHHHH
Q 019344 271 MWAVVFRICFYHQKVDWLYFLAFGIVVIG 299 (342)
Q Consensus 271 v~~~~~~~~~~~e~~~~~~~~G~~li~~g 299 (342)
+...+....+++.+++.....+..+.+..
T Consensus 77 i~~~~~~m~~~g~~l~~~s~~~~~i~igi 105 (199)
T d1iwga7 77 LLGTFAVLAAFGFSINTLTMFGMVLAIGL 105 (199)
T ss_dssp HHHHHHHHHTTTCCSCHHHHHHHHHHHHH
T ss_pred hHHHHHHhhcCCCchHHHHHHHHHHHHHH
Confidence 44444455667788887777776666543
No 6
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=3.94 E-value=2.5e+02 Score=12.91 Aligned_cols=14 Identities=21% Similarity=0.392 Sum_probs=7.1
Q ss_pred HHHHHHHHHhcccc
Q 019344 272 WAVVFRICFYHQKV 285 (342)
Q Consensus 272 ~~~~~~~~~~~e~~ 285 (342)
++.++=.++|.|+|
T Consensus 14 i~lfffaiffrepp 27 (30)
T d2axtt1 14 IALFFFAIFFREPP 27 (30)
T ss_dssp HHHHHHHHHTSCCC
T ss_pred HHHHHHHHHhcCCC
Confidence 34444445566665
No 7
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=3.81 E-value=1.7e+02 Score=18.12 Aligned_cols=14 Identities=14% Similarity=-0.111 Sum_probs=6.9
Q ss_pred HHHHHHHHhhccCC
Q 019344 294 GIVVIGLIIYSTTE 307 (342)
Q Consensus 294 ~li~~g~~l~~~~~ 307 (342)
.+++.|.+++...+
T Consensus 29 ~v~V~~~~~~~~~r 42 (91)
T d1fftb2 29 VIPAILMAVGFAWK 42 (91)
T ss_dssp TTHHHHHHHTTTTT
T ss_pred HHHHHHHHHhhhee
Confidence 33445555555444
No 8
>d2nwwa1 f.49.1.1 (A:12-416) Proton glutamate symport protein {Pyrococcus horikoshii [TaxId: 53953]}
Probab=3.39 E-value=9.3e+02 Score=18.82 Aligned_cols=44 Identities=16% Similarity=0.215 Sum_probs=23.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Q 019344 17 LRTLYLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLA 63 (342)
Q Consensus 17 ~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~p~~~~~~r~~~~~ 63 (342)
+|.+.++++|.++.+.+.-..+... ......|....|.|.+-..
T Consensus 3 ~rili~lv~Gi~~G~~~~~~~~~~~---~~~~l~~~g~lFi~lL~m~ 46 (405)
T d2nwwa1 3 QKILIGLILGAIVGLILGHYGYAHA---VHTYVKPFGDLFVRLLKML 46 (405)
T ss_dssp SHHHHHHHHHHHHHHHHHTTTTHHH---HTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccccchHH---HHHHHHHHHHHHHHHHHHH
Confidence 4667777777766665543322211 1123446666666655543
No 9
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=3.36 E-value=3.8e+02 Score=14.89 Aligned_cols=17 Identities=29% Similarity=0.149 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHhhccC
Q 019344 289 YFLAFGIVVIGLIIYSTT 306 (342)
Q Consensus 289 ~~~G~~li~~g~~l~~~~ 306 (342)
-.++..++ .++.++.+.
T Consensus 44 ~~~~~~~~-~~~~~~~~f 60 (64)
T d2iuba2 44 VVLAVMGV-IAVIMVVYF 60 (64)
T ss_dssp HHHHHHHH-HHHHHHTTT
T ss_pred HHHHHHHH-HHHHHHHHH
Confidence 33333333 333333333
No 10
>d1gl4a1 d.22.1.2 (A:399-631) Domain G2 of nidogen-1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=2.96 E-value=1.4e+02 Score=22.52 Aligned_cols=33 Identities=15% Similarity=0.036 Sum_probs=0.0
Q ss_pred HHHhhccchhHHHHhhhhhHHHHHHHHHHHhccc
Q 019344 99 NKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTR 132 (342)
Q Consensus 99 ~~al~~~~~~~~~ii~~~~pi~~~il~~l~l~e~ 132 (342)
|.|+..+|+.....+..+.|+.. .++|+|-+|.
T Consensus 42 ytaIs~IP~~~G~~L~~L~~ig~-~igWlFA~e~ 74 (233)
T d1gl4a1 42 YTAISTIPETVGYSLLPLAPIGG-IIGWMFAVEQ 74 (233)
T ss_dssp EEEEESCCHHHHGGGTTCTHHHH-HHHHHTCEEC
T ss_pred EEEccCCChhHhhhhhhhhhhcC-ceeeeEEeec
Done!