Query 019346
Match_columns 342
No_of_seqs 245 out of 1975
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 08:42:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019346.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019346hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02612 phytoene desaturase 100.0 1.1E-34 2.4E-39 274.6 31.3 319 16-334 52-370 (567)
2 TIGR02731 phytoene_desat phyto 100.0 2.7E-29 5.9E-34 234.1 28.6 275 59-334 1-280 (453)
3 TIGR02732 zeta_caro_desat caro 100.0 4.6E-26 1E-30 212.1 28.0 273 59-334 1-288 (474)
4 PLN02487 zeta-carotene desatur 99.9 1.3E-24 2.8E-29 204.0 27.7 276 56-334 74-364 (569)
5 PRK07233 hypothetical protein; 99.9 2.4E-24 5.3E-29 200.2 22.6 255 59-334 1-258 (434)
6 PRK12416 protoporphyrinogen ox 99.9 4.2E-24 9.1E-29 199.9 22.0 259 58-334 2-284 (463)
7 PRK11883 protoporphyrinogen ox 99.9 8.1E-24 1.7E-28 197.7 21.2 259 58-334 1-279 (451)
8 PRK07208 hypothetical protein; 99.9 1E-23 2.2E-28 198.2 20.8 256 56-334 3-284 (479)
9 COG1232 HemY Protoporphyrinoge 99.9 6.1E-24 1.3E-28 191.6 18.0 251 58-334 1-272 (444)
10 COG2907 Predicted NAD/FAD-bind 99.9 2.1E-23 4.4E-28 176.2 18.2 259 56-334 7-277 (447)
11 COG3349 Uncharacterized conser 99.9 2.9E-23 6.3E-28 186.4 19.9 279 58-339 1-289 (485)
12 TIGR00562 proto_IX_ox protopor 99.9 3.5E-23 7.6E-28 193.9 21.3 252 57-334 2-283 (462)
13 PLN02576 protoporphyrinogen ox 99.9 3.8E-23 8.3E-28 195.1 20.9 259 53-334 8-301 (496)
14 TIGR02733 desat_CrtD C-3',4' d 99.9 8E-21 1.7E-25 179.0 22.2 265 57-334 1-298 (492)
15 TIGR02734 crtI_fam phytoene de 99.9 8.5E-21 1.8E-25 179.3 21.6 258 60-331 1-277 (502)
16 COG1233 Phytoene dehydrogenase 99.9 1.6E-20 3.5E-25 175.5 20.3 264 56-334 2-285 (487)
17 TIGR02730 carot_isom carotene 99.9 5.4E-20 1.2E-24 173.1 21.3 257 58-331 1-287 (493)
18 PLN02268 probable polyamine ox 99.9 2E-20 4.3E-25 173.8 16.6 244 58-333 1-255 (435)
19 TIGR03467 HpnE squalene-associ 99.8 2.8E-19 6.1E-24 165.5 22.8 255 71-334 1-258 (419)
20 PRK13977 myosin-cross-reactive 99.8 2.8E-19 6.1E-24 165.2 22.0 260 52-331 17-294 (576)
21 KOG0029 Amine oxidase [Seconda 99.8 8.7E-20 1.9E-24 168.6 16.5 82 53-134 11-93 (501)
22 COG1231 Monoamine oxidase [Ami 99.8 6.2E-20 1.3E-24 162.1 13.4 251 55-334 5-266 (450)
23 PTZ00363 rab-GDP dissociation 99.8 8.1E-18 1.8E-22 154.0 23.2 258 55-327 2-287 (443)
24 PLN02529 lysine-specific histo 99.8 1.6E-18 3.4E-23 166.4 19.2 244 54-332 157-409 (738)
25 TIGR03329 Phn_aa_oxid putative 99.8 8.1E-20 1.8E-24 170.4 8.4 61 270-334 181-241 (460)
26 PLN02676 polyamine oxidase 99.8 4.2E-18 9.2E-23 159.0 18.4 248 54-333 23-289 (487)
27 PLN02568 polyamine oxidase 99.8 5.8E-17 1.3E-21 152.5 20.0 76 56-132 4-85 (539)
28 PLN02328 lysine-specific histo 99.7 1.9E-16 4.2E-21 152.8 20.4 245 54-332 235-489 (808)
29 PLN03000 amine oxidase 99.7 1.3E-16 2.7E-21 154.1 18.9 79 55-133 182-264 (881)
30 KOG1276 Protoporphyrinogen oxi 99.7 1.7E-16 3.6E-21 138.4 17.3 258 54-334 8-313 (491)
31 KOG0685 Flavin-containing amin 99.7 9.4E-17 2E-21 142.1 15.1 75 54-129 18-94 (498)
32 COG2081 Predicted flavoprotein 99.7 2.7E-16 5.7E-21 137.1 12.8 170 56-334 2-171 (408)
33 PLN02976 amine oxidase 99.7 3E-15 6.5E-20 149.0 19.4 79 55-133 691-778 (1713)
34 PF01266 DAO: FAD dependent ox 99.7 1.5E-16 3.2E-21 144.0 9.0 62 271-334 146-207 (358)
35 PF01593 Amino_oxidase: Flavin 99.7 2.3E-16 4.9E-21 146.5 9.5 67 67-133 1-68 (450)
36 KOG4254 Phytoene desaturase [C 99.6 1.2E-14 2.5E-19 127.6 17.1 75 258-334 251-327 (561)
37 TIGR01373 soxB sarcosine oxida 99.6 4E-16 8.7E-21 143.8 8.5 62 270-332 181-242 (407)
38 PRK00711 D-amino acid dehydrog 99.6 4.3E-16 9.3E-21 144.1 8.5 63 270-334 199-261 (416)
39 COG0579 Predicted dehydrogenas 99.6 1.1E-15 2.4E-20 137.4 10.6 64 270-334 151-215 (429)
40 PRK12409 D-amino acid dehydrog 99.6 2.6E-15 5.6E-20 138.6 13.0 62 270-333 195-261 (410)
41 PRK11101 glpA sn-glycerol-3-ph 99.6 2.6E-15 5.7E-20 142.5 12.7 63 270-333 147-214 (546)
42 TIGR01377 soxA_mon sarcosine o 99.6 1.1E-15 2.4E-20 139.7 7.6 62 270-334 143-204 (380)
43 PF06100 Strep_67kDa_ant: Stre 99.6 5.2E-14 1.1E-18 126.7 17.6 227 57-301 2-236 (500)
44 TIGR03364 HpnW_proposed FAD de 99.6 8.6E-15 1.9E-19 133.0 12.7 58 270-334 143-201 (365)
45 PF03486 HI0933_like: HI0933-l 99.6 1.3E-15 2.8E-20 138.2 6.6 61 271-332 108-168 (409)
46 PRK11259 solA N-methyltryptoph 99.6 7.3E-15 1.6E-19 134.1 10.6 62 270-334 147-208 (376)
47 KOG2820 FAD-dependent oxidored 99.6 2.7E-14 5.8E-19 121.1 11.1 65 271-335 152-217 (399)
48 PF13450 NAD_binding_8: NAD(P) 99.6 1E-14 2.3E-19 97.7 6.3 66 62-128 1-68 (68)
49 PRK11728 hydroxyglutarate oxid 99.5 7.4E-15 1.6E-19 134.7 6.8 59 271-332 148-206 (393)
50 PTZ00383 malate:quinone oxidor 99.5 1.3E-13 2.7E-18 128.4 14.8 63 270-334 209-277 (497)
51 TIGR00031 UDP-GALP_mutase UDP- 99.5 1.5E-13 3.3E-18 123.1 14.2 238 58-330 2-247 (377)
52 COG3380 Predicted NAD/FAD-depe 99.5 1.4E-14 3E-19 119.3 6.5 69 59-128 3-71 (331)
53 COG0665 DadA Glycine/D-amino a 99.5 2.3E-13 5E-18 124.7 15.1 61 270-333 154-215 (387)
54 PRK01747 mnmC bifunctional tRN 99.5 9.5E-14 2.1E-18 135.2 10.6 62 270-334 406-467 (662)
55 PLN02464 glycerol-3-phosphate 99.5 7.2E-13 1.6E-17 127.4 14.6 65 270-334 230-300 (627)
56 PRK07121 hypothetical protein; 99.5 3.7E-12 8E-17 120.1 18.9 60 272-331 177-240 (492)
57 PRK04176 ribulose-1,5-biphosph 99.5 9.6E-13 2.1E-17 112.7 13.0 60 271-330 103-173 (257)
58 COG1635 THI4 Ribulose 1,5-bisp 99.5 4.5E-13 9.8E-18 107.2 9.9 42 55-96 28-69 (262)
59 TIGR01320 mal_quin_oxido malat 99.4 3.4E-13 7.4E-18 125.8 9.4 64 270-334 176-244 (483)
60 PRK05257 malate:quinone oxidor 99.4 4E-13 8.8E-18 125.5 9.7 64 270-334 181-250 (494)
61 PRK06481 fumarate reductase fl 99.4 6.2E-12 1.4E-16 118.6 17.6 58 273-331 191-252 (506)
62 PRK12266 glpD glycerol-3-phosp 99.4 9.1E-13 2E-17 124.2 11.7 62 270-333 153-219 (508)
63 PRK13369 glycerol-3-phosphate 99.4 9.1E-13 2E-17 124.3 11.6 62 270-333 153-218 (502)
64 TIGR00292 thiazole biosynthesi 99.4 3.6E-12 7.8E-17 108.8 13.7 42 55-96 19-60 (254)
65 TIGR01813 flavo_cyto_c flavocy 99.4 2.7E-12 6E-17 119.4 13.8 60 272-331 130-193 (439)
66 COG0578 GlpA Glycerol-3-phosph 99.4 1E-12 2.2E-17 120.7 9.8 70 263-334 154-229 (532)
67 PRK13339 malate:quinone oxidor 99.4 1.2E-12 2.6E-17 121.5 10.1 65 270-334 182-251 (497)
68 PRK08274 tricarballylate dehyd 99.4 8.9E-12 1.9E-16 116.9 15.1 58 272-330 131-192 (466)
69 PF00996 GDI: GDP dissociation 99.4 6.7E-11 1.5E-15 107.5 20.1 255 55-330 2-288 (438)
70 PRK12845 3-ketosteroid-delta-1 99.4 2.1E-11 4.6E-16 115.9 16.4 59 272-331 217-279 (564)
71 COG0562 Glf UDP-galactopyranos 99.4 1.1E-11 2.4E-16 104.8 12.5 220 57-300 1-223 (374)
72 PRK08773 2-octaprenyl-3-methyl 99.3 1.1E-11 2.3E-16 113.9 12.4 56 273-330 114-169 (392)
73 PRK10157 putative oxidoreducta 99.3 2.1E-11 4.5E-16 112.8 13.4 56 273-330 109-164 (428)
74 PF01946 Thi4: Thi4 family; PD 99.3 8.3E-12 1.8E-16 100.7 8.9 41 56-96 16-56 (230)
75 PF00890 FAD_binding_2: FAD bi 99.3 3.2E-11 7E-16 111.6 13.7 59 272-331 141-204 (417)
76 PRK05714 2-octaprenyl-3-methyl 99.3 1.4E-11 3E-16 113.6 11.1 57 273-331 113-169 (405)
77 PRK06134 putative FAD-binding 99.3 1.7E-10 3.7E-15 110.6 18.8 60 271-331 216-279 (581)
78 PRK12839 hypothetical protein; 99.3 1.1E-10 2.3E-15 111.4 17.2 61 271-331 213-277 (572)
79 KOG2844 Dimethylglycine dehydr 99.3 3.3E-12 7.2E-17 117.3 6.5 59 270-330 185-243 (856)
80 PRK06175 L-aspartate oxidase; 99.3 4.7E-11 1E-15 110.4 14.1 58 272-330 128-189 (433)
81 PRK12835 3-ketosteroid-delta-1 99.3 1.3E-10 2.9E-15 111.2 17.3 60 272-331 213-276 (584)
82 TIGR00275 flavoprotein, HI0933 99.3 3.5E-11 7.5E-16 110.3 12.3 56 272-330 105-160 (400)
83 PRK07804 L-aspartate oxidase; 99.3 1.2E-10 2.6E-15 110.7 16.3 59 272-330 144-210 (541)
84 PF13738 Pyr_redox_3: Pyridine 99.3 3.4E-11 7.3E-16 100.1 11.1 55 277-333 87-141 (203)
85 PRK07573 sdhA succinate dehydr 99.3 9.9E-11 2.1E-15 113.1 15.3 55 276-331 174-233 (640)
86 COG0644 FixC Dehydrogenases (f 99.3 5.2E-11 1.1E-15 109.2 11.7 57 273-330 96-152 (396)
87 PRK08958 sdhA succinate dehydr 99.3 6.3E-11 1.4E-15 113.5 12.7 60 272-331 143-207 (588)
88 PRK12844 3-ketosteroid-delta-1 99.3 3.2E-10 6.9E-15 108.2 17.4 59 272-331 208-270 (557)
89 PRK07364 2-octaprenyl-6-methox 99.3 7.5E-11 1.6E-15 109.1 12.9 38 55-92 16-53 (415)
90 PRK06452 sdhA succinate dehydr 99.3 9.3E-11 2E-15 112.0 13.7 57 273-330 137-198 (566)
91 PRK07395 L-aspartate oxidase; 99.2 1E-10 2.3E-15 111.1 13.9 59 272-330 134-197 (553)
92 PTZ00139 Succinate dehydrogena 99.2 6E-11 1.3E-15 114.2 12.2 59 272-330 166-229 (617)
93 COG4716 Myosin-crossreactive a 99.2 1.8E-11 4E-16 105.4 7.6 232 52-301 17-256 (587)
94 TIGR03378 glycerol3P_GlpB glyc 99.2 4.8E-11 1E-15 107.7 10.7 62 272-334 263-327 (419)
95 PRK06847 hypothetical protein; 99.2 3.6E-11 7.8E-16 109.7 10.1 57 273-331 108-164 (375)
96 PRK05249 soluble pyridine nucl 99.2 3.1E-11 6.7E-16 113.1 9.9 56 273-330 217-272 (461)
97 TIGR00551 nadB L-aspartate oxi 99.2 1.9E-10 4.1E-15 108.3 15.1 59 272-331 128-190 (488)
98 PRK08163 salicylate hydroxylas 99.2 3.6E-11 7.8E-16 110.5 9.9 57 273-331 110-167 (396)
99 PRK07057 sdhA succinate dehydr 99.2 1.4E-10 3.1E-15 111.2 14.0 59 272-330 148-211 (591)
100 PLN00128 Succinate dehydrogena 99.2 8.5E-11 1.8E-15 113.2 12.3 59 272-330 187-250 (635)
101 PRK07045 putative monooxygenas 99.2 1E-10 2.2E-15 107.2 12.3 58 273-330 107-165 (388)
102 PRK06184 hypothetical protein; 99.2 5.1E-11 1.1E-15 112.7 10.5 58 274-331 111-169 (502)
103 PRK09078 sdhA succinate dehydr 99.2 1.4E-10 3.1E-15 111.4 13.6 59 273-331 150-213 (598)
104 PRK06263 sdhA succinate dehydr 99.2 3.5E-10 7.6E-15 107.8 15.8 59 272-330 134-197 (543)
105 PRK12842 putative succinate de 99.2 8.8E-10 1.9E-14 105.7 18.6 45 54-98 6-50 (574)
106 PLN02172 flavin-containing mon 99.2 1.6E-10 3.4E-15 107.4 13.0 43 55-97 8-50 (461)
107 TIGR01988 Ubi-OHases Ubiquinon 99.2 9.8E-11 2.1E-15 107.2 11.5 57 273-331 107-164 (385)
108 PRK08244 hypothetical protein; 99.2 1.2E-10 2.5E-15 110.2 12.2 57 274-330 102-159 (493)
109 PRK12843 putative FAD-binding 99.2 1.5E-09 3.3E-14 104.1 19.9 60 271-331 220-283 (578)
110 PRK07608 ubiquinone biosynthes 99.2 3.6E-10 7.8E-15 103.6 15.1 56 272-330 111-167 (388)
111 TIGR01812 sdhA_frdA_Gneg succi 99.2 2.5E-10 5.5E-15 109.5 14.5 57 273-330 130-191 (566)
112 PRK07843 3-ketosteroid-delta-1 99.2 8.1E-10 1.8E-14 105.5 17.9 44 55-98 5-48 (557)
113 PRK06834 hypothetical protein; 99.2 4.8E-11 1E-15 112.0 9.2 57 273-331 101-157 (488)
114 PLN02463 lycopene beta cyclase 99.2 1.7E-10 3.8E-15 106.5 12.7 55 273-330 115-169 (447)
115 PRK07333 2-octaprenyl-6-methox 99.2 1.1E-10 2.3E-15 107.6 11.0 58 272-331 111-168 (403)
116 PRK08020 ubiF 2-octaprenyl-3-m 99.2 2.5E-10 5.5E-15 104.7 13.4 57 273-331 113-170 (391)
117 TIGR02032 GG-red-SF geranylger 99.2 1.4E-10 3.1E-15 102.1 11.3 58 272-330 91-148 (295)
118 PRK10015 oxidoreductase; Provi 99.2 1.9E-10 4E-15 106.4 12.4 56 273-330 109-164 (429)
119 PRK07190 hypothetical protein; 99.2 1.5E-10 3.3E-15 108.5 11.6 55 275-331 112-166 (487)
120 PLN02815 L-aspartate oxidase 99.2 3.4E-10 7.3E-15 108.1 14.1 42 55-97 27-68 (594)
121 PRK09126 hypothetical protein; 99.2 1.3E-10 2.8E-15 106.8 10.9 55 274-330 112-167 (392)
122 PRK08013 oxidoreductase; Provi 99.2 2.1E-10 4.6E-15 105.5 12.2 57 273-331 112-169 (400)
123 PRK06416 dihydrolipoamide dehy 99.2 1.2E-10 2.6E-15 109.2 10.7 44 56-100 3-46 (462)
124 TIGR01984 UbiH 2-polyprenyl-6- 99.2 7.7E-11 1.7E-15 107.8 9.3 57 272-330 105-162 (382)
125 PRK06116 glutathione reductase 99.2 8E-11 1.7E-15 109.9 9.4 56 273-329 209-264 (450)
126 PRK12837 3-ketosteroid-delta-1 99.2 1.6E-09 3.5E-14 102.5 18.2 42 55-97 5-46 (513)
127 PF12831 FAD_oxidored: FAD dep 99.2 3.6E-11 7.9E-16 111.2 6.8 40 59-98 1-40 (428)
128 PRK08205 sdhA succinate dehydr 99.2 3.5E-10 7.5E-15 108.6 13.6 59 272-330 140-206 (583)
129 TIGR01350 lipoamide_DH dihydro 99.2 2E-10 4.3E-15 107.7 11.7 42 57-99 1-42 (461)
130 PRK05192 tRNA uridine 5-carbox 99.2 2.7E-10 6E-15 107.1 12.1 59 273-333 101-160 (618)
131 PRK06115 dihydrolipoamide dehy 99.2 1.6E-10 3.4E-15 108.2 10.7 43 57-99 3-45 (466)
132 PF04820 Trp_halogenase: Trypt 99.2 1.2E-09 2.6E-14 101.5 15.9 58 273-331 155-212 (454)
133 PRK08401 L-aspartate oxidase; 99.2 1.2E-09 2.5E-14 102.3 16.0 57 272-331 120-176 (466)
134 PLN02697 lycopene epsilon cycl 99.2 5.7E-10 1.2E-14 104.7 13.8 59 273-333 193-251 (529)
135 TIGR01421 gluta_reduc_1 glutat 99.2 4.3E-10 9.4E-15 104.8 12.9 57 273-330 208-265 (450)
136 PRK05945 sdhA succinate dehydr 99.2 5.2E-10 1.1E-14 107.3 13.8 58 272-330 135-197 (575)
137 COG0654 UbiH 2-polyprenyl-6-me 99.2 4.1E-10 8.8E-15 103.1 12.4 57 273-331 105-163 (387)
138 PRK07803 sdhA succinate dehydr 99.1 6.3E-10 1.4E-14 107.5 13.8 41 56-96 7-47 (626)
139 PRK08641 sdhA succinate dehydr 99.1 1.3E-09 2.8E-14 104.6 15.9 40 57-96 3-42 (589)
140 PRK07588 hypothetical protein; 99.1 4.7E-10 1E-14 103.0 12.3 55 274-331 105-159 (391)
141 TIGR02485 CobZ_N-term precorri 99.1 1.2E-09 2.7E-14 101.4 15.2 59 272-330 123-183 (432)
142 PRK05329 anaerobic glycerol-3- 99.1 3.8E-10 8.2E-15 103.1 11.5 61 273-334 260-322 (422)
143 PRK07494 2-octaprenyl-6-methox 99.1 1.3E-10 2.8E-15 106.6 8.5 58 272-331 111-168 (388)
144 PTZ00306 NADH-dependent fumara 99.1 1E-09 2.3E-14 112.7 15.7 44 54-97 406-449 (1167)
145 PRK07236 hypothetical protein; 99.1 1.4E-09 3.1E-14 99.5 15.1 62 56-132 5-66 (386)
146 PRK06183 mhpA 3-(3-hydroxyphen 99.1 9.1E-10 2E-14 105.1 14.2 63 55-133 8-70 (538)
147 PRK08849 2-octaprenyl-3-methyl 99.1 4.9E-10 1.1E-14 102.6 11.8 54 276-331 114-168 (384)
148 PRK06854 adenylylsulfate reduc 99.1 1.5E-09 3.3E-14 104.4 15.7 58 273-331 133-196 (608)
149 PRK08071 L-aspartate oxidase; 99.1 6.8E-10 1.5E-14 104.8 12.9 57 272-330 130-190 (510)
150 PRK08010 pyridine nucleotide-d 99.1 1.5E-10 3.2E-15 107.9 8.3 56 272-330 199-254 (441)
151 PRK06069 sdhA succinate dehydr 99.1 1.8E-09 4E-14 103.6 15.9 57 273-330 138-200 (577)
152 TIGR01292 TRX_reduct thioredox 99.1 4.9E-10 1.1E-14 98.9 11.1 38 58-96 1-38 (300)
153 PRK12834 putative FAD-binding 99.1 3.1E-09 6.6E-14 101.6 17.0 42 56-97 3-46 (549)
154 PRK08626 fumarate reductase fl 99.1 4.2E-10 9.2E-15 108.9 11.3 57 273-330 159-220 (657)
155 PRK07251 pyridine nucleotide-d 99.1 5.3E-10 1.1E-14 104.1 11.6 42 57-98 3-45 (438)
156 PLN02661 Putative thiazole syn 99.1 1.7E-09 3.7E-14 95.2 13.9 44 52-95 87-131 (357)
157 TIGR01372 soxA sarcosine oxida 99.1 6.6E-09 1.4E-13 105.4 20.0 43 56-98 162-204 (985)
158 PRK05976 dihydrolipoamide dehy 99.1 4.5E-10 9.7E-15 105.5 10.7 44 56-100 3-46 (472)
159 PRK09231 fumarate reductase fl 99.1 2E-09 4.4E-14 103.2 15.2 57 273-330 134-196 (582)
160 PRK06185 hypothetical protein; 99.1 7.1E-10 1.5E-14 102.4 11.7 57 273-330 109-169 (407)
161 PRK08275 putative oxidoreducta 99.1 3.4E-09 7.4E-14 101.3 16.6 58 273-330 138-200 (554)
162 PRK08132 FAD-dependent oxidore 99.1 7.3E-10 1.6E-14 106.0 12.0 63 54-132 20-82 (547)
163 PRK07512 L-aspartate oxidase; 99.1 1.1E-09 2.4E-14 103.5 12.7 58 272-330 136-197 (513)
164 TIGR01176 fum_red_Fp fumarate 99.1 2.4E-09 5.2E-14 102.4 15.1 59 272-331 132-196 (580)
165 TIGR02023 BchP-ChlP geranylger 99.1 1.3E-09 2.8E-14 99.9 12.3 32 58-89 1-32 (388)
166 COG2072 TrkA Predicted flavopr 99.1 3.2E-09 6.8E-14 98.3 14.8 45 53-97 4-49 (443)
167 TIGR01811 sdhA_Bsu succinate d 99.1 1.4E-09 3E-14 104.6 12.8 58 273-330 130-196 (603)
168 PRK06370 mercuric reductase; V 99.1 2.2E-09 4.7E-14 100.7 13.8 43 56-99 4-46 (463)
169 PRK07818 dihydrolipoamide dehy 99.1 3E-09 6.5E-14 99.8 14.7 42 57-99 4-45 (466)
170 TIGR01424 gluta_reduc_2 glutat 99.1 1.7E-09 3.7E-14 100.8 12.8 41 57-98 2-42 (446)
171 PF13454 NAD_binding_9: FAD-NA 99.1 6.1E-09 1.3E-13 82.5 14.1 49 277-328 106-155 (156)
172 PRK12831 putative oxidoreducta 99.1 6.6E-09 1.4E-13 97.0 16.6 44 54-97 137-180 (464)
173 COG3075 GlpB Anaerobic glycero 99.1 2.9E-09 6.3E-14 90.6 12.7 61 273-334 259-321 (421)
174 PRK06126 hypothetical protein; 99.1 2.7E-09 5.7E-14 102.2 14.2 64 54-133 4-67 (545)
175 PRK05732 2-octaprenyl-6-methox 99.1 1.5E-09 3.3E-14 99.7 12.0 54 275-330 115-169 (395)
176 PRK09077 L-aspartate oxidase; 99.1 3.1E-09 6.7E-14 101.1 14.3 58 273-330 139-207 (536)
177 TIGR03140 AhpF alkyl hydropero 99.1 9.4E-10 2E-14 104.2 10.7 53 275-329 270-322 (515)
178 PRK08850 2-octaprenyl-6-methox 99.1 1.5E-09 3.2E-14 100.1 11.6 55 274-330 113-168 (405)
179 TIGR01790 carotene-cycl lycope 99.0 2.4E-09 5.1E-14 98.2 12.5 57 272-330 85-141 (388)
180 PF01494 FAD_binding_3: FAD bi 99.0 1E-10 2.2E-15 105.7 3.5 59 273-331 112-173 (356)
181 PRK08243 4-hydroxybenzoate 3-m 99.0 3.4E-09 7.4E-14 97.3 13.5 61 57-133 2-64 (392)
182 PRK11445 putative oxidoreducta 99.0 2.1E-09 4.6E-14 97.0 11.9 59 58-131 2-62 (351)
183 PRK15317 alkyl hydroperoxide r 99.0 1.2E-09 2.7E-14 103.5 10.8 54 274-329 268-321 (517)
184 KOG2415 Electron transfer flav 99.0 1.7E-09 3.7E-14 94.7 10.6 58 272-329 183-255 (621)
185 PRK06617 2-octaprenyl-6-methox 99.0 4E-09 8.7E-14 96.2 13.7 56 273-331 105-161 (374)
186 PF06039 Mqo: Malate:quinone o 99.0 6.8E-10 1.5E-14 99.4 8.2 64 270-334 179-248 (488)
187 PRK06753 hypothetical protein; 99.0 2.5E-09 5.5E-14 97.5 12.2 36 58-93 1-36 (373)
188 TIGR01989 COQ6 Ubiquinone bios 99.0 4.5E-09 9.9E-14 97.7 13.8 59 273-331 118-184 (437)
189 COG1249 Lpd Pyruvate/2-oxoglut 99.0 5.2E-09 1.1E-13 96.2 13.3 47 56-102 3-49 (454)
190 PRK05868 hypothetical protein; 99.0 1.4E-09 3E-14 99.0 9.4 46 284-331 116-161 (372)
191 PLN02507 glutathione reductase 99.0 5E-09 1.1E-13 98.7 13.2 55 273-329 245-299 (499)
192 PF01134 GIDA: Glucose inhibit 99.0 3.6E-09 7.8E-14 94.5 11.5 56 273-330 96-152 (392)
193 KOG2853 Possible oxidoreductas 99.0 1.3E-09 2.7E-14 93.1 8.0 37 55-91 84-124 (509)
194 TIGR02360 pbenz_hydroxyl 4-hyd 99.0 3.5E-09 7.6E-14 97.0 11.6 63 57-133 2-64 (390)
195 TIGR01316 gltA glutamate synth 99.0 3.2E-08 6.8E-13 92.3 18.1 43 55-97 131-173 (449)
196 PRK06327 dihydrolipoamide dehy 99.0 3.5E-09 7.7E-14 99.5 11.8 33 56-88 3-35 (475)
197 TIGR02053 MerA mercuric reduct 99.0 2.4E-09 5.2E-14 100.4 10.5 40 58-98 1-40 (463)
198 COG0492 TrxB Thioredoxin reduc 99.0 5.6E-09 1.2E-13 91.3 11.7 54 273-330 62-115 (305)
199 PTZ00058 glutathione reductase 99.0 4.2E-09 9.2E-14 99.9 11.5 47 54-101 45-91 (561)
200 TIGR03219 salicylate_mono sali 99.0 2.1E-09 4.5E-14 99.4 9.2 55 273-331 106-160 (414)
201 PRK06467 dihydrolipoamide dehy 99.0 3.2E-08 7E-13 92.8 17.1 43 56-98 3-45 (471)
202 PLN00093 geranylgeranyl diphos 99.0 1.5E-08 3.3E-13 94.0 14.6 38 53-90 35-72 (450)
203 PRK12769 putative oxidoreducta 99.0 1.9E-08 4.1E-13 98.2 15.7 43 55-97 325-367 (654)
204 TIGR00136 gidA glucose-inhibit 99.0 6.8E-09 1.5E-13 97.7 12.0 59 272-331 96-155 (617)
205 PRK06475 salicylate hydroxylas 99.0 4.8E-09 1E-13 96.6 10.9 59 273-331 108-168 (400)
206 PRK06996 hypothetical protein; 98.9 1.7E-08 3.6E-13 92.9 13.8 54 273-328 116-172 (398)
207 PF00732 GMC_oxred_N: GMC oxid 98.9 7.4E-09 1.6E-13 91.3 10.9 36 58-93 1-37 (296)
208 PRK10262 thioredoxin reductase 98.9 8.7E-09 1.9E-13 92.0 11.3 43 55-98 4-46 (321)
209 TIGR02352 thiamin_ThiO glycine 98.9 3.4E-09 7.4E-14 95.2 8.8 63 270-334 135-197 (337)
210 PRK09897 hypothetical protein; 98.9 1.5E-08 3.3E-13 95.2 13.3 53 275-329 110-165 (534)
211 TIGR02028 ChlP geranylgeranyl 98.9 1.2E-08 2.5E-13 93.8 12.3 36 58-93 1-36 (398)
212 PRK12779 putative bifunctional 98.9 3E-08 6.4E-13 99.5 16.1 43 55-97 304-346 (944)
213 TIGR03143 AhpF_homolog putativ 98.9 4.5E-09 9.8E-14 100.4 9.9 40 56-96 3-42 (555)
214 KOG2404 Fumarate reductase, fl 98.9 3.4E-08 7.3E-13 84.0 13.7 40 59-98 11-50 (477)
215 PRK14694 putative mercuric red 98.9 1.7E-08 3.6E-13 94.8 13.2 44 54-98 3-46 (468)
216 PTZ00052 thioredoxin reductase 98.9 1E-08 2.2E-13 96.8 11.7 56 273-330 223-278 (499)
217 PRK13748 putative mercuric red 98.9 1.5E-08 3.2E-13 97.4 13.1 54 273-329 311-364 (561)
218 PRK08294 phenol 2-monooxygenas 98.9 1.2E-08 2.7E-13 98.6 12.2 61 55-133 30-93 (634)
219 PRK07538 hypothetical protein; 98.9 2.3E-08 5E-13 92.4 13.6 35 58-92 1-35 (413)
220 COG1252 Ndh NADH dehydrogenase 98.9 1.1E-08 2.3E-13 92.0 10.7 58 271-334 208-266 (405)
221 PRK12775 putative trifunctiona 98.9 4.2E-08 9.1E-13 99.3 16.2 42 56-97 429-470 (1006)
222 PRK14727 putative mercuric red 98.9 3.7E-08 8E-13 92.7 14.5 46 54-99 13-58 (479)
223 PRK12778 putative bifunctional 98.9 4.1E-08 8.8E-13 97.3 15.4 43 55-97 429-471 (752)
224 KOG2852 Possible oxidoreductas 98.9 3.8E-09 8.2E-14 88.3 6.8 63 270-334 145-212 (380)
225 PRK11749 dihydropyrimidine deh 98.9 1.4E-07 3E-12 88.4 17.9 43 55-97 138-180 (457)
226 PRK09853 putative selenate red 98.9 1.1E-07 2.4E-12 94.5 17.6 43 55-97 537-579 (1019)
227 PLN02985 squalene monooxygenas 98.9 4.3E-08 9.4E-13 92.5 14.3 39 53-91 39-77 (514)
228 TIGR02061 aprA adenosine phosp 98.9 7.1E-08 1.5E-12 92.5 15.1 58 273-330 127-191 (614)
229 PF00743 FMO-like: Flavin-bind 98.8 3.8E-08 8.3E-13 92.9 12.8 40 58-97 2-41 (531)
230 TIGR02462 pyranose_ox pyranose 98.8 1.4E-07 3.1E-12 88.6 16.5 37 58-94 1-37 (544)
231 KOG2665 Predicted FAD-dependen 98.8 5.2E-08 1.1E-12 82.6 12.0 59 272-330 196-257 (453)
232 PF05834 Lycopene_cycl: Lycope 98.8 8.6E-09 1.9E-13 93.8 7.6 55 273-330 88-142 (374)
233 PRK12810 gltD glutamate syntha 98.8 2.7E-07 5.8E-12 86.7 17.7 43 55-97 141-183 (471)
234 KOG1399 Flavin-containing mono 98.8 3.2E-08 7E-13 90.6 11.2 43 56-98 5-47 (448)
235 PRK09754 phenylpropionate diox 98.8 4.1E-08 8.8E-13 90.2 11.6 55 273-330 187-241 (396)
236 PLN02546 glutathione reductase 98.8 1.5E-07 3.3E-12 89.4 15.6 44 55-98 77-129 (558)
237 TIGR03197 MnmC_Cterm tRNA U-34 98.8 7.2E-09 1.6E-13 94.8 6.4 62 270-334 133-194 (381)
238 TIGR01423 trypano_reduc trypan 98.8 6.6E-08 1.4E-12 90.7 12.8 57 272-329 231-287 (486)
239 TIGR01318 gltD_gamma_fam gluta 98.8 2.3E-07 5E-12 86.8 16.4 43 55-97 139-181 (467)
240 PRK12809 putative oxidoreducta 98.8 1.5E-07 3.3E-12 91.4 15.5 43 55-97 308-350 (639)
241 PF00070 Pyr_redox: Pyridine n 98.8 1.6E-07 3.4E-12 65.4 10.3 35 59-93 1-35 (80)
242 KOG0042 Glycerol-3-phosphate d 98.7 2.4E-09 5.2E-14 96.7 1.1 72 260-331 212-288 (680)
243 PRK13800 putative oxidoreducta 98.7 6.5E-08 1.4E-12 97.5 11.2 37 55-91 11-47 (897)
244 PRK07845 flavoprotein disulfid 98.7 6.2E-07 1.4E-11 84.1 16.9 40 58-98 2-41 (466)
245 COG1053 SdhA Succinate dehydro 98.7 1.8E-07 4E-12 88.5 13.0 44 55-98 4-47 (562)
246 KOG1439 RAB proteins geranylge 98.7 1.6E-07 3.4E-12 82.3 11.1 254 56-330 3-288 (440)
247 PLN02927 antheraxanthin epoxid 98.7 4.5E-08 9.7E-13 93.9 8.5 36 55-90 79-114 (668)
248 KOG2614 Kynurenine 3-monooxyge 98.7 1.5E-07 3.2E-12 83.1 10.9 39 57-95 2-40 (420)
249 TIGR01810 betA choline dehydro 98.7 3E-07 6.5E-12 87.8 13.3 50 284-334 206-260 (532)
250 PRK12771 putative glutamate sy 98.7 2.9E-06 6.3E-11 81.6 19.3 43 55-97 135-177 (564)
251 PRK14989 nitrite reductase sub 98.6 1.8E-07 3.9E-12 93.1 11.0 57 274-330 189-245 (847)
252 PRK02106 choline dehydrogenase 98.6 4.9E-07 1.1E-11 86.9 13.2 36 56-91 4-40 (560)
253 KOG1335 Dihydrolipoamide dehyd 98.6 3.9E-07 8.4E-12 79.4 10.9 43 56-98 38-80 (506)
254 TIGR02374 nitri_red_nirB nitri 98.6 2E-07 4.3E-12 92.6 10.5 54 274-329 184-237 (785)
255 TIGR03377 glycerol3P_GlpA glyc 98.6 9.5E-08 2.1E-12 90.8 7.7 64 270-334 126-194 (516)
256 PRK09564 coenzyme A disulfide 98.6 9.6E-07 2.1E-11 82.5 13.8 55 272-329 191-245 (444)
257 COG5044 MRS6 RAB proteins gera 98.6 2.9E-06 6.3E-11 73.7 15.1 250 55-325 4-279 (434)
258 COG2509 Uncharacterized FAD-de 98.6 9E-07 1.9E-11 79.1 12.3 58 272-330 173-230 (486)
259 PTZ00318 NADH dehydrogenase-li 98.6 7.2E-07 1.6E-11 82.7 11.8 52 272-329 228-279 (424)
260 PRK06912 acoL dihydrolipoamide 98.6 3.1E-06 6.6E-11 79.4 16.0 40 58-98 1-40 (458)
261 PRK04965 NADH:flavorubredoxin 98.5 2.7E-07 5.8E-12 84.3 8.5 55 273-329 184-238 (377)
262 PRK13512 coenzyme A disulfide 98.5 1.6E-06 3.5E-11 80.7 13.7 51 273-329 190-240 (438)
263 COG0029 NadB Aspartate oxidase 98.5 8.6E-07 1.9E-11 80.2 11.2 58 272-329 133-195 (518)
264 TIGR01438 TGR thioredoxin and 98.5 3.9E-06 8.5E-11 79.0 15.8 33 57-89 2-34 (484)
265 TIGR03452 mycothione_red mycot 98.5 9E-07 1.9E-11 82.7 10.8 41 57-100 2-42 (452)
266 KOG1298 Squalene monooxygenase 98.5 1.9E-07 4.2E-12 81.3 5.0 37 53-89 41-77 (509)
267 TIGR03315 Se_ygfK putative sel 98.5 3E-07 6.5E-12 91.9 6.8 42 56-97 536-577 (1012)
268 COG4529 Uncharacterized protei 98.4 2.7E-06 5.8E-11 77.0 11.4 38 58-95 2-42 (474)
269 PLN02852 ferredoxin-NADP+ redu 98.4 4.4E-07 9.6E-12 84.5 6.4 44 54-97 23-68 (491)
270 PRK07846 mycothione reductase; 98.4 8.5E-06 1.8E-10 76.1 14.8 39 57-98 1-39 (451)
271 COG3573 Predicted oxidoreducta 98.4 8.9E-06 1.9E-10 70.0 13.3 41 56-96 4-46 (552)
272 TIGR03169 Nterm_to_SelD pyridi 98.4 2.3E-06 5.1E-11 77.8 10.3 52 273-330 192-243 (364)
273 PRK06292 dihydrolipoamide dehy 98.3 7.5E-07 1.6E-11 83.6 5.3 42 56-98 2-43 (460)
274 COG0445 GidA Flavin-dependent 98.3 3.9E-06 8.5E-11 76.8 9.5 48 286-334 115-162 (621)
275 COG1148 HdrA Heterodisulfide r 98.3 8.3E-07 1.8E-11 79.7 4.6 45 55-99 122-166 (622)
276 KOG0405 Pyridine nucleotide-di 98.3 3.2E-06 6.9E-11 72.9 7.7 76 52-132 15-90 (478)
277 PTZ00188 adrenodoxin reductase 98.2 2.4E-06 5.2E-11 78.7 6.3 43 56-98 38-81 (506)
278 PRK06567 putative bifunctional 98.2 2.3E-06 5.1E-11 84.5 6.2 42 54-95 380-421 (1028)
279 TIGR01789 lycopene_cycl lycope 98.2 2.1E-06 4.5E-11 78.0 5.0 37 59-95 1-39 (370)
280 KOG4405 GDP dissociation inhib 98.2 5.2E-05 1.1E-09 66.9 13.1 122 200-326 216-341 (547)
281 PRK12814 putative NADPH-depend 98.2 3.2E-06 7E-11 82.4 6.5 43 55-97 191-233 (652)
282 KOG1336 Monodehydroascorbate/f 98.2 2.2E-05 4.7E-10 70.9 11.1 59 273-331 256-314 (478)
283 PRK05335 tRNA (uracil-5-)-meth 98.2 2.7E-06 5.8E-11 77.2 5.5 36 57-92 2-37 (436)
284 PTZ00367 squalene epoxidase; P 98.2 2.5E-06 5.3E-11 81.3 5.4 37 54-90 30-66 (567)
285 PF13434 K_oxygenase: L-lysine 98.1 1.8E-05 3.9E-10 70.8 10.3 36 57-92 2-38 (341)
286 TIGR01424 gluta_reduc_2 glutat 98.1 3.4E-05 7.3E-10 72.1 11.7 49 279-329 214-262 (446)
287 KOG0404 Thioredoxin reductase 98.1 1.6E-05 3.5E-10 64.5 8.1 55 273-331 71-125 (322)
288 PRK07845 flavoprotein disulfid 98.1 3.5E-05 7.7E-10 72.4 11.6 50 278-329 224-273 (466)
289 COG0446 HcaD Uncharacterized N 98.1 3.8E-05 8.3E-10 70.9 11.2 38 57-94 136-173 (415)
290 PF07992 Pyr_redox_2: Pyridine 98.0 6.2E-06 1.3E-10 68.2 5.0 33 59-91 1-33 (201)
291 TIGR00137 gid_trmFO tRNA:m(5)U 98.0 6.3E-06 1.4E-10 75.2 5.1 35 58-92 1-35 (433)
292 TIGR03385 CoA_CoA_reduc CoA-di 98.0 6.7E-05 1.4E-09 69.8 12.1 48 278-329 185-232 (427)
293 TIGR01317 GOGAT_sm_gam glutama 98.0 8.7E-06 1.9E-10 76.7 6.1 42 56-97 142-183 (485)
294 COG0493 GltD NADPH-dependent g 98.0 8.3E-06 1.8E-10 75.3 5.7 43 55-97 121-163 (457)
295 KOG0399 Glutamate synthase [Am 98.0 7.2E-06 1.6E-10 80.4 5.4 46 52-97 1780-1825(2142)
296 PTZ00153 lipoamide dehydrogena 98.0 9.1E-06 2E-10 78.7 6.1 46 56-101 115-161 (659)
297 PRK07846 mycothione reductase; 98.0 7.5E-05 1.6E-09 69.8 11.3 34 58-91 167-200 (451)
298 PRK06327 dihydrolipoamide dehy 98.0 8.6E-05 1.9E-09 70.0 11.6 34 58-91 184-217 (475)
299 TIGR03862 flavo_PP4765 unchara 97.9 6.1E-05 1.3E-09 67.9 9.7 57 271-331 85-142 (376)
300 PRK12770 putative glutamate sy 97.9 1.7E-05 3.7E-10 71.7 6.3 42 56-97 17-58 (352)
301 PRK06912 acoL dihydrolipoamide 97.9 0.00011 2.5E-09 68.9 11.8 34 58-91 171-204 (458)
302 PRK13984 putative oxidoreducta 97.9 2.6E-05 5.7E-10 75.7 6.5 43 55-97 281-323 (604)
303 PRK05675 sdhA succinate dehydr 97.8 0.00017 3.7E-09 69.4 11.6 59 272-330 126-189 (570)
304 COG3634 AhpF Alkyl hydroperoxi 97.8 3.4E-05 7.3E-10 66.8 5.7 57 273-329 267-324 (520)
305 TIGR03452 mycothione_red mycot 97.8 0.00022 4.7E-09 66.8 11.6 33 58-90 170-202 (452)
306 PRK06467 dihydrolipoamide dehy 97.8 0.00023 5E-09 67.0 11.5 34 58-91 175-208 (471)
307 PLN02546 glutathione reductase 97.8 0.00026 5.6E-09 67.7 11.7 52 278-330 299-350 (558)
308 PRK08255 salicylyl-CoA 5-hydro 97.8 2.8E-05 6.1E-10 77.3 5.2 34 58-91 1-36 (765)
309 TIGR01438 TGR thioredoxin and 97.8 0.00026 5.6E-09 66.8 11.3 50 278-329 226-278 (484)
310 KOG2960 Protein involved in th 97.8 9.5E-06 2.1E-10 65.2 1.3 66 56-132 75-144 (328)
311 PTZ00153 lipoamide dehydrogena 97.7 0.00033 7.2E-09 68.0 11.8 34 58-91 313-346 (659)
312 KOG2311 NAD/FAD-utilizing prot 97.7 0.00062 1.3E-08 61.6 11.1 35 55-89 26-60 (679)
313 COG2303 BetA Choline dehydroge 97.6 5.6E-05 1.2E-09 72.1 4.6 37 54-90 4-40 (542)
314 KOG1800 Ferredoxin/adrenodoxin 97.6 8.6E-05 1.9E-09 65.1 5.3 39 59-97 22-62 (468)
315 PRK06292 dihydrolipoamide dehy 97.6 0.00055 1.2E-08 64.4 11.2 35 57-91 169-203 (460)
316 KOG3923 D-aspartate oxidase [A 97.5 0.00031 6.7E-09 59.7 6.7 49 272-334 151-199 (342)
317 PLN02785 Protein HOTHEAD 97.4 0.00018 4E-09 69.1 5.4 37 54-91 52-88 (587)
318 COG1251 NirB NAD(P)H-nitrite r 97.4 0.00051 1.1E-08 65.5 8.0 52 276-329 191-242 (793)
319 PF13434 K_oxygenase: L-lysine 97.4 0.002 4.2E-08 57.9 10.9 37 54-90 187-225 (341)
320 PF07156 Prenylcys_lyase: Pren 97.3 0.00058 1.3E-08 61.5 7.0 115 205-330 68-187 (368)
321 KOG1346 Programmed cell death 97.3 0.00068 1.5E-08 60.3 7.0 58 271-330 392-449 (659)
322 KOG1335 Dihydrolipoamide dehyd 97.3 0.00098 2.1E-08 58.8 7.8 41 55-95 209-249 (506)
323 COG1206 Gid NAD(FAD)-utilizing 97.0 0.00068 1.5E-08 58.5 3.9 35 57-91 3-37 (439)
324 KOG4716 Thioredoxin reductase 97.0 0.00083 1.8E-08 58.2 4.1 59 271-330 237-300 (503)
325 COG3486 IucD Lysine/ornithine 96.9 0.021 4.5E-07 51.2 11.9 38 55-92 3-41 (436)
326 PRK09754 phenylpropionate diox 96.8 0.0029 6.2E-08 58.3 6.6 38 57-94 144-181 (396)
327 COG1249 Lpd Pyruvate/2-oxoglut 96.8 0.003 6.5E-08 58.6 6.4 40 55-94 171-210 (454)
328 PF01210 NAD_Gly3P_dh_N: NAD-d 96.6 0.0028 6E-08 50.2 4.2 32 59-90 1-32 (157)
329 KOG1238 Glucose dehydrogenase/ 96.4 0.0045 9.7E-08 58.6 4.8 39 54-92 54-93 (623)
330 PRK01438 murD UDP-N-acetylmura 96.4 0.005 1.1E-07 58.2 5.3 35 57-91 16-50 (480)
331 PF03721 UDPG_MGDP_dh_N: UDP-g 96.3 0.0044 9.6E-08 50.4 3.9 34 58-91 1-34 (185)
332 PF02737 3HCDH_N: 3-hydroxyacy 96.3 0.0056 1.2E-07 49.6 4.2 33 59-91 1-33 (180)
333 KOG3855 Monooxygenase involved 96.3 0.0052 1.1E-07 54.9 4.3 37 54-90 33-73 (481)
334 PRK02705 murD UDP-N-acetylmura 96.2 0.0058 1.3E-07 57.5 4.7 33 59-91 2-34 (459)
335 PRK05976 dihydrolipoamide dehy 96.1 0.0082 1.8E-07 56.6 5.1 35 58-92 181-215 (472)
336 PRK07251 pyridine nucleotide-d 96.1 0.01 2.2E-07 55.5 5.6 36 58-93 158-193 (438)
337 PRK04965 NADH:flavorubredoxin 96.1 0.01 2.2E-07 54.2 5.3 37 57-93 141-177 (377)
338 PF02558 ApbA: Ketopantoate re 96.0 0.012 2.5E-07 46.2 4.7 31 60-90 1-31 (151)
339 COG0569 TrkA K+ transport syst 95.9 0.012 2.5E-07 49.6 4.7 34 58-91 1-34 (225)
340 TIGR01350 lipoamide_DH dihydro 95.9 0.012 2.5E-07 55.4 5.2 36 58-93 171-206 (461)
341 TIGR01316 gltA glutamate synth 95.9 0.029 6.3E-07 52.6 7.6 36 56-91 271-306 (449)
342 TIGR01421 gluta_reduc_1 glutat 95.9 0.013 2.7E-07 55.0 5.2 36 58-93 167-202 (450)
343 TIGR02053 MerA mercuric reduct 95.9 0.012 2.7E-07 55.3 5.1 36 58-93 167-202 (463)
344 PRK12831 putative oxidoreducta 95.8 0.032 6.8E-07 52.5 7.5 36 56-91 280-315 (464)
345 PRK06115 dihydrolipoamide dehy 95.8 0.016 3.5E-07 54.5 5.6 37 57-93 174-210 (466)
346 PRK06129 3-hydroxyacyl-CoA deh 95.8 0.013 2.7E-07 52.0 4.5 33 58-90 3-35 (308)
347 PF13738 Pyr_redox_3: Pyridine 95.8 0.014 2.9E-07 48.2 4.4 36 55-90 165-200 (203)
348 PRK06416 dihydrolipoamide dehy 95.7 0.016 3.4E-07 54.6 5.1 36 58-93 173-208 (462)
349 TIGR02374 nitri_red_nirB nitri 95.7 0.021 4.5E-07 57.4 6.2 35 58-92 141-175 (785)
350 PRK13512 coenzyme A disulfide 95.7 0.015 3.2E-07 54.4 4.9 37 58-94 149-185 (438)
351 PRK06370 mercuric reductase; V 95.7 0.019 4.1E-07 54.1 5.6 38 57-94 171-208 (463)
352 PRK05249 soluble pyridine nucl 95.7 0.018 3.9E-07 54.2 5.3 37 57-93 175-211 (461)
353 PRK07818 dihydrolipoamide dehy 95.7 0.017 3.7E-07 54.4 5.1 36 58-93 173-208 (466)
354 PF01262 AlaDh_PNT_C: Alanine 95.5 0.026 5.7E-07 45.1 5.0 36 55-90 18-53 (168)
355 COG1004 Ugd Predicted UDP-gluc 95.5 0.018 3.9E-07 51.5 4.3 33 58-90 1-33 (414)
356 PRK14106 murD UDP-N-acetylmura 95.5 0.022 4.8E-07 53.4 5.2 34 57-90 5-38 (450)
357 PRK06249 2-dehydropantoate 2-r 95.5 0.029 6.3E-07 49.9 5.6 35 56-90 4-38 (313)
358 PRK14989 nitrite reductase sub 95.4 0.032 6.8E-07 56.3 6.2 35 58-92 146-180 (847)
359 TIGR01816 sdhA_forward succina 95.3 0.049 1.1E-06 52.6 7.0 58 272-330 119-181 (565)
360 TIGR01470 cysG_Nterm siroheme 95.3 0.034 7.4E-07 46.0 5.0 34 57-90 9-42 (205)
361 TIGR03140 AhpF alkyl hydropero 95.2 0.029 6.2E-07 53.6 5.1 36 57-92 352-387 (515)
362 PRK08293 3-hydroxybutyryl-CoA 95.2 0.028 6.2E-07 49.2 4.6 33 58-90 4-36 (287)
363 PF01488 Shikimate_DH: Shikima 95.2 0.053 1.1E-06 41.6 5.6 35 55-89 10-45 (135)
364 PRK09260 3-hydroxybutyryl-CoA 95.2 0.029 6.2E-07 49.2 4.6 32 59-90 3-34 (288)
365 PTZ00058 glutathione reductase 95.2 0.032 6.9E-07 53.6 5.2 37 57-93 237-273 (561)
366 PRK05708 2-dehydropantoate 2-r 95.2 0.035 7.7E-07 49.1 5.1 34 57-90 2-35 (305)
367 PF13241 NAD_binding_7: Putati 95.2 0.022 4.8E-07 41.4 3.2 35 56-90 6-40 (103)
368 PRK09564 coenzyme A disulfide 95.1 0.036 7.9E-07 51.8 5.5 36 57-92 149-184 (444)
369 PRK07066 3-hydroxybutyryl-CoA 95.1 0.034 7.3E-07 49.3 4.6 33 58-90 8-40 (321)
370 PRK07819 3-hydroxybutyryl-CoA 95.0 0.031 6.6E-07 49.0 4.3 34 58-91 6-39 (286)
371 PRK12778 putative bifunctional 95.0 0.076 1.6E-06 53.2 7.6 36 56-91 569-605 (752)
372 PRK06522 2-dehydropantoate 2-r 94.9 0.039 8.4E-07 48.7 4.8 32 58-89 1-32 (304)
373 PLN02507 glutathione reductase 94.9 0.043 9.4E-07 52.1 5.2 36 57-92 203-238 (499)
374 PRK12921 2-dehydropantoate 2-r 94.9 0.041 8.9E-07 48.6 4.8 31 58-88 1-31 (305)
375 PRK06718 precorrin-2 dehydroge 94.9 0.053 1.1E-06 44.8 5.1 34 56-89 9-42 (202)
376 PRK06719 precorrin-2 dehydroge 94.9 0.055 1.2E-06 42.7 5.0 32 56-87 12-43 (157)
377 PRK06116 glutathione reductase 94.8 0.048 1E-06 51.1 5.3 36 57-92 167-202 (450)
378 PRK10262 thioredoxin reductase 94.8 0.05 1.1E-06 48.5 5.2 36 57-92 146-181 (321)
379 PRK07530 3-hydroxybutyryl-CoA 94.8 0.041 8.9E-07 48.3 4.6 33 58-90 5-37 (292)
380 KOG2755 Oxidoreductase [Genera 94.8 0.023 5.1E-07 47.8 2.7 34 59-92 1-36 (334)
381 PRK13748 putative mercuric red 94.8 0.051 1.1E-06 52.5 5.5 33 58-90 271-303 (561)
382 PRK08010 pyridine nucleotide-d 94.8 0.048 1E-06 51.0 5.1 36 58-93 159-194 (441)
383 cd05292 LDH_2 A subgroup of L- 94.8 0.049 1.1E-06 48.2 4.9 33 58-90 1-35 (308)
384 TIGR03143 AhpF_homolog putativ 94.7 0.046 1E-06 52.7 5.1 36 56-91 142-177 (555)
385 PRK12770 putative glutamate sy 94.7 0.055 1.2E-06 48.9 5.2 35 57-91 172-207 (352)
386 cd01080 NAD_bind_m-THF_DH_Cycl 94.7 0.067 1.5E-06 42.7 5.0 36 54-89 41-77 (168)
387 PRK08229 2-dehydropantoate 2-r 94.6 0.055 1.2E-06 48.7 5.0 33 58-90 3-35 (341)
388 TIGR02354 thiF_fam2 thiamine b 94.6 0.058 1.3E-06 44.4 4.7 36 56-91 20-56 (200)
389 PRK14694 putative mercuric red 94.6 0.062 1.3E-06 50.7 5.4 33 58-90 179-211 (468)
390 PTZ00052 thioredoxin reductase 94.6 0.058 1.3E-06 51.3 5.2 32 58-89 183-214 (499)
391 PRK14727 putative mercuric red 94.6 0.063 1.4E-06 50.8 5.5 33 58-90 189-221 (479)
392 PRK06035 3-hydroxyacyl-CoA deh 94.6 0.05 1.1E-06 47.8 4.5 33 58-90 4-36 (291)
393 PRK15317 alkyl hydroperoxide r 94.6 0.056 1.2E-06 51.6 5.1 37 56-92 350-386 (517)
394 TIGR01423 trypano_reduc trypan 94.5 0.063 1.4E-06 50.8 5.3 37 57-93 187-226 (486)
395 PRK04148 hypothetical protein; 94.5 0.051 1.1E-06 41.3 3.7 34 57-91 17-50 (134)
396 PF00899 ThiF: ThiF family; I 94.4 0.061 1.3E-06 41.2 4.2 39 57-95 2-41 (135)
397 PRK05808 3-hydroxybutyryl-CoA 94.4 0.056 1.2E-06 47.2 4.5 33 58-90 4-36 (282)
398 TIGR01763 MalateDH_bact malate 94.4 0.078 1.7E-06 46.9 5.3 34 58-91 2-36 (305)
399 TIGR01292 TRX_reduct thioredox 94.3 0.073 1.6E-06 46.7 5.1 36 56-91 140-175 (300)
400 TIGR00518 alaDH alanine dehydr 94.3 0.073 1.6E-06 48.4 5.1 35 56-90 166-200 (370)
401 COG1252 Ndh NADH dehydrogenase 94.3 0.038 8.3E-07 50.3 3.1 38 56-93 154-204 (405)
402 TIGR03026 NDP-sugDHase nucleot 94.2 0.058 1.3E-06 49.9 4.3 33 59-91 2-34 (411)
403 COG0686 Ald Alanine dehydrogen 94.2 0.058 1.3E-06 46.6 3.8 36 54-89 165-200 (371)
404 PRK14619 NAD(P)H-dependent gly 94.1 0.093 2E-06 46.5 5.2 34 57-90 4-37 (308)
405 PRK15116 sulfur acceptor prote 94.1 0.093 2E-06 45.2 4.9 42 56-97 29-71 (268)
406 PF00056 Ldh_1_N: lactate/mala 94.1 0.12 2.5E-06 40.0 5.1 33 58-90 1-36 (141)
407 PRK11064 wecC UDP-N-acetyl-D-m 94.0 0.069 1.5E-06 49.4 4.4 33 58-90 4-36 (415)
408 COG0771 MurD UDP-N-acetylmuram 93.9 0.086 1.9E-06 48.7 4.7 36 57-92 7-42 (448)
409 PRK14620 NAD(P)H-dependent gly 93.9 0.094 2E-06 46.9 4.9 32 59-90 2-33 (326)
410 cd05311 NAD_bind_2_malic_enz N 93.8 0.11 2.5E-06 43.6 5.0 35 56-90 24-61 (226)
411 PRK12779 putative bifunctional 93.8 0.19 4E-06 51.5 7.4 35 56-90 446-480 (944)
412 PRK11749 dihydropyrimidine deh 93.8 0.09 1.9E-06 49.4 4.7 36 56-91 272-308 (457)
413 PRK06130 3-hydroxybutyryl-CoA 93.7 0.098 2.1E-06 46.4 4.7 33 58-90 5-37 (311)
414 PRK09424 pntA NAD(P) transhydr 93.7 0.099 2.2E-06 49.3 4.8 36 55-90 163-198 (509)
415 KOG3851 Sulfide:quinone oxidor 93.6 0.079 1.7E-06 46.0 3.5 38 54-91 36-75 (446)
416 PLN02545 3-hydroxybutyryl-CoA 93.5 0.1 2.2E-06 45.9 4.5 33 58-90 5-37 (295)
417 PRK14618 NAD(P)H-dependent gly 93.5 0.13 2.7E-06 46.1 5.1 34 57-90 4-37 (328)
418 PTZ00318 NADH dehydrogenase-li 93.5 0.11 2.4E-06 48.3 4.9 36 58-93 174-223 (424)
419 cd05293 LDH_1 A subgroup of L- 93.5 0.15 3.2E-06 45.2 5.3 35 56-90 2-38 (312)
420 KOG2304 3-hydroxyacyl-CoA dehy 93.5 0.093 2E-06 43.2 3.6 38 54-91 8-45 (298)
421 PRK04690 murD UDP-N-acetylmura 93.5 0.11 2.4E-06 48.9 4.8 34 57-90 8-41 (468)
422 PRK12549 shikimate 5-dehydroge 93.4 0.15 3.3E-06 44.6 5.1 35 56-90 126-161 (284)
423 PRK00094 gpsA NAD(P)H-dependen 93.4 0.13 2.8E-06 45.9 4.9 33 58-90 2-34 (325)
424 COG1748 LYS9 Saccharopine dehy 93.3 0.13 2.8E-06 46.6 4.7 32 58-89 2-34 (389)
425 PLN02353 probable UDP-glucose 93.3 0.12 2.6E-06 48.5 4.7 33 58-90 2-36 (473)
426 COG3634 AhpF Alkyl hydroperoxi 93.3 0.11 2.3E-06 45.8 4.0 39 53-91 350-388 (520)
427 COG2072 TrkA Predicted flavopr 93.3 0.21 4.6E-06 46.7 6.3 39 53-91 171-209 (443)
428 PRK01710 murD UDP-N-acetylmura 93.3 0.12 2.6E-06 48.6 4.7 33 58-90 15-47 (458)
429 KOG2495 NADH-dehydrogenase (ub 93.3 4.8 0.0001 36.9 14.2 39 53-91 51-89 (491)
430 PRK02472 murD UDP-N-acetylmura 93.2 0.13 2.8E-06 48.2 4.9 34 57-90 5-38 (447)
431 PRK04308 murD UDP-N-acetylmura 93.2 0.15 3.3E-06 47.7 5.3 35 57-91 5-39 (445)
432 PF02254 TrkA_N: TrkA-N domain 93.1 0.19 4.1E-06 37.2 4.7 32 60-91 1-32 (116)
433 cd05191 NAD_bind_amino_acid_DH 93.1 0.28 6.1E-06 34.2 5.3 34 55-88 21-55 (86)
434 PRK12475 thiamine/molybdopteri 93.1 0.15 3.3E-06 45.6 4.8 35 56-90 23-58 (338)
435 TIGR02279 PaaC-3OHAcCoADH 3-hy 93.0 0.13 2.8E-06 48.7 4.5 34 57-90 5-38 (503)
436 PRK07688 thiamine/molybdopteri 93.0 0.17 3.6E-06 45.4 5.0 35 56-90 23-58 (339)
437 PRK03369 murD UDP-N-acetylmura 93.0 0.15 3.3E-06 48.3 5.0 33 57-89 12-44 (488)
438 cd01075 NAD_bind_Leu_Phe_Val_D 93.0 0.2 4.3E-06 41.3 5.0 35 56-90 27-61 (200)
439 PRK15057 UDP-glucose 6-dehydro 93.0 0.14 3E-06 46.9 4.4 31 59-90 2-32 (388)
440 PRK08644 thiamine biosynthesis 92.9 0.19 4.1E-06 41.9 4.8 36 56-91 27-63 (212)
441 TIGR03169 Nterm_to_SelD pyridi 92.9 0.14 2.9E-06 46.6 4.4 48 278-330 60-107 (364)
442 cd05291 HicDH_like L-2-hydroxy 92.9 0.18 3.8E-06 44.7 4.9 33 59-91 2-36 (306)
443 COG1893 ApbA Ketopantoate redu 92.9 0.16 3.4E-06 44.9 4.6 33 58-90 1-33 (307)
444 PRK07417 arogenate dehydrogena 92.9 0.15 3.3E-06 44.4 4.5 32 59-90 2-33 (279)
445 COG1251 NirB NAD(P)H-nitrite r 92.8 0.14 3.1E-06 49.5 4.4 48 280-331 67-114 (793)
446 PRK07531 bifunctional 3-hydrox 92.8 0.15 3.2E-06 48.4 4.6 33 58-90 5-37 (495)
447 TIGR01915 npdG NADPH-dependent 92.7 0.19 4.2E-06 42.1 4.7 33 58-90 1-34 (219)
448 TIGR02355 moeB molybdopterin s 92.7 0.2 4.3E-06 42.6 4.8 42 56-97 23-65 (240)
449 PRK12810 gltD glutamate syntha 92.7 0.43 9.3E-06 45.1 7.5 36 56-91 280-316 (471)
450 PTZ00082 L-lactate dehydrogena 92.7 0.22 4.8E-06 44.3 5.2 35 57-91 6-41 (321)
451 PF03446 NAD_binding_2: NAD bi 92.6 0.21 4.6E-06 39.6 4.6 33 58-90 2-34 (163)
452 PRK00421 murC UDP-N-acetylmura 92.6 0.17 3.7E-06 47.7 4.7 36 56-91 6-42 (461)
453 TIGR02356 adenyl_thiF thiazole 92.6 0.23 5E-06 41.0 4.8 36 56-91 20-56 (202)
454 PRK06223 malate dehydrogenase; 92.5 0.21 4.6E-06 44.2 4.9 33 58-90 3-36 (307)
455 PRK08306 dipicolinate synthase 92.5 0.24 5.1E-06 43.6 5.1 35 56-90 151-185 (296)
456 TIGR00561 pntA NAD(P) transhyd 92.5 0.2 4.3E-06 47.3 4.8 35 56-90 163-197 (511)
457 PRK05690 molybdopterin biosynt 92.5 0.24 5.1E-06 42.3 4.9 36 56-91 31-67 (245)
458 cd01487 E1_ThiF_like E1_ThiF_l 92.4 0.24 5.3E-06 39.8 4.8 33 59-91 1-34 (174)
459 PRK08268 3-hydroxy-acyl-CoA de 92.4 0.17 3.8E-06 48.0 4.5 34 58-91 8-41 (507)
460 PF13478 XdhC_C: XdhC Rossmann 92.4 0.17 3.7E-06 38.8 3.6 32 60-91 1-32 (136)
461 TIGR01317 GOGAT_sm_gam glutama 92.4 0.57 1.2E-05 44.4 7.9 37 56-92 282-319 (485)
462 cd01483 E1_enzyme_family Super 92.4 0.24 5.2E-06 38.3 4.5 38 59-96 1-39 (143)
463 PRK00066 ldh L-lactate dehydro 92.4 0.3 6.5E-06 43.4 5.6 35 56-90 5-41 (315)
464 PRK11730 fadB multifunctional 92.3 0.17 3.6E-06 50.3 4.3 34 58-91 314-347 (715)
465 cd00401 AdoHcyase S-adenosyl-L 92.3 0.25 5.3E-06 45.4 5.1 36 56-91 201-236 (413)
466 PLN02172 flavin-containing mon 92.3 0.27 5.9E-06 46.2 5.5 37 55-91 202-238 (461)
467 PRK08328 hypothetical protein; 92.2 0.23 4.9E-06 42.0 4.5 36 56-91 26-62 (231)
468 cd01078 NAD_bind_H4MPT_DH NADP 92.1 0.3 6.4E-06 40.0 5.0 34 56-89 27-61 (194)
469 PRK00141 murD UDP-N-acetylmura 92.1 0.23 4.9E-06 46.9 4.9 32 58-89 16-47 (473)
470 KOG2495 NADH-dehydrogenase (ub 92.1 0.065 1.4E-06 48.4 1.1 34 58-91 219-266 (491)
471 TIGR02437 FadB fatty oxidation 92.0 0.19 4.2E-06 49.8 4.4 35 56-90 312-346 (714)
472 cd00757 ThiF_MoeB_HesA_family 92.0 0.28 6E-06 41.4 4.7 41 56-96 20-61 (228)
473 KOG1336 Monodehydroascorbate/f 91.9 0.41 8.8E-06 44.0 5.9 36 57-92 213-248 (478)
474 cd05290 LDH_3 A subgroup of L- 91.9 0.26 5.6E-06 43.6 4.6 32 59-90 1-34 (307)
475 PRK12548 shikimate 5-dehydroge 91.9 0.34 7.5E-06 42.5 5.4 35 56-90 125-160 (289)
476 TIGR02853 spore_dpaA dipicolin 91.8 0.31 6.7E-06 42.7 5.0 35 56-90 150-184 (287)
477 PRK01368 murD UDP-N-acetylmura 91.8 0.22 4.8E-06 46.7 4.3 31 58-89 7-37 (454)
478 TIGR03736 PRTRC_ThiF PRTRC sys 91.8 0.28 6.2E-06 41.6 4.5 38 55-92 9-57 (244)
479 TIGR00507 aroE shikimate 5-deh 91.7 0.31 6.8E-06 42.2 5.0 35 56-90 116-150 (270)
480 PRK03803 murD UDP-N-acetylmura 91.6 0.24 5.2E-06 46.4 4.4 34 57-90 6-39 (448)
481 cd01339 LDH-like_MDH L-lactate 91.6 0.24 5.3E-06 43.7 4.2 31 60-90 1-32 (300)
482 PLN02256 arogenate dehydrogena 91.6 0.51 1.1E-05 41.7 6.1 35 56-90 35-69 (304)
483 COG0281 SfcA Malic enzyme [Ene 91.5 0.34 7.4E-06 43.8 4.9 38 54-91 196-236 (432)
484 PTZ00117 malate dehydrogenase; 91.5 0.37 7.9E-06 42.9 5.2 35 56-90 4-39 (319)
485 PRK09496 trkA potassium transp 91.4 0.28 6E-06 46.0 4.6 33 58-90 1-33 (453)
486 PRK12814 putative NADPH-depend 91.3 0.36 7.9E-06 47.5 5.4 35 56-90 322-357 (652)
487 TIGR02441 fa_ox_alpha_mit fatt 91.2 0.26 5.5E-06 49.1 4.3 34 58-91 336-369 (737)
488 COG1250 FadB 3-hydroxyacyl-CoA 91.2 0.3 6.5E-06 42.9 4.2 33 58-90 4-36 (307)
489 TIGR02964 xanthine_xdhC xanthi 91.2 0.42 9.1E-06 40.8 5.0 37 55-91 98-134 (246)
490 PRK02006 murD UDP-N-acetylmura 91.2 0.29 6.3E-06 46.6 4.5 33 58-90 8-40 (498)
491 PF07992 Pyr_redox_2: Pyridine 91.2 0.36 7.9E-06 39.4 4.6 53 277-329 63-121 (201)
492 PRK08223 hypothetical protein; 91.1 0.34 7.4E-06 42.0 4.5 36 56-91 26-62 (287)
493 PRK05562 precorrin-2 dehydroge 91.0 0.44 9.6E-06 39.8 4.9 35 55-89 23-57 (223)
494 cd01065 NAD_bind_Shikimate_DH 91.0 0.49 1.1E-05 37.0 5.0 35 56-90 18-53 (155)
495 TIGR01505 tartro_sem_red 2-hyd 91.0 0.27 5.8E-06 43.2 3.8 32 59-90 1-32 (291)
496 cd01485 E1-1_like Ubiquitin ac 90.9 0.38 8.2E-06 39.6 4.4 37 56-92 18-55 (198)
497 PRK00258 aroE shikimate 5-dehy 90.9 0.48 1E-05 41.3 5.3 35 56-90 122-157 (278)
498 PRK00683 murD UDP-N-acetylmura 90.8 0.34 7.4E-06 45.0 4.6 33 58-90 4-36 (418)
499 cd00755 YgdL_like Family of ac 90.8 0.39 8.5E-06 40.5 4.5 41 56-96 10-51 (231)
500 PRK11154 fadJ multifunctional 90.8 0.57 1.2E-05 46.6 6.3 34 57-90 309-343 (708)
No 1
>PLN02612 phytoene desaturase
Probab=100.00 E-value=1.1e-34 Score=274.65 Aligned_cols=319 Identities=86% Similarity=1.401 Sum_probs=257.8
Q ss_pred CCCCCeeeccCCCCCCcccccchHHHhhhcCCCCCCCCCCCCCeEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCcc
Q 019346 16 GFCPSKVVCVDYPRPDIDNTSNFLEAAYLSSSFRTSPRPSKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGK 95 (342)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~~gG~ 95 (342)
+..|....|+++|.+.++++.+|.............+......+|+|||||++|++||++|.+.|++|+|+|+++++||.
T Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~gG~ 131 (567)
T PLN02612 52 GRGPLQVVCVDYPRPELENTVNFLEAAALSASFRSAPRPAKPLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGK 131 (567)
T ss_pred CCCCceEEecCCCCCchhhHHHHHhhhhhccccccCCCCCCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCCCc
Confidence 44688999999999999999999987655444444455556789999999999999999999999999999999999999
Q ss_pred eeeeccCCCceeecceeEecCCcccHHHHHHHcCCCccccccccceeeeccCCCCCccccCCCCCCCCchhhHHHHHhcC
Q 019346 96 IAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNN 175 (342)
Q Consensus 96 ~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (342)
+.++...+|+.+|.|.|++.+.++++.++++++|++....+......+.....++.+..+.++...+.++..+..++...
T Consensus 132 ~~s~~~~~G~~~D~G~h~~~g~~~~~~~ll~elG~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~P~~l~~~~~~l~~~ 211 (567)
T PLN02612 132 VAAWKDEDGDWYETGLHIFFGAYPNVQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGIWAILRNN 211 (567)
T ss_pred ceeeEcCCCCEEcCCceEEeCCCchHHHHHHHhCCcccceecccceEEEecCCCCceeeCcCchhcCChhhhhHHHHhcC
Confidence 99877557899999999999999999999999999877666666666655544455544555544555566566666655
Q ss_pred CCCChhHHHHhhhccchhhhcCchhhhhccCCCHHHHHHHcCCChhHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHhh
Q 019346 176 EMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEWMRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFL 255 (342)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (342)
..+.+.++++....+........+.....+..++.+|+++.+.++.+.++++.++....++.+++++++...+..+..++
T Consensus 212 ~~ls~~~kl~~~~~~~~~~~~~~~~~~~~d~~Sv~e~l~~~~~~~~~~~~~~~~l~~~~~~~~p~~~S~~~~l~~l~~~l 291 (567)
T PLN02612 212 EMLTWPEKIKFAIGLLPAIVGGQAYVEAQDGLSVKEWMRKQGVPDRVNDEVFIAMSKALNFINPDELSMQCILIALNRFL 291 (567)
T ss_pred ccCCHHHHHHHHHhhhHHhcccchhhhhcCcCcHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCHHHhhHHHHHHHHHHHH
Confidence 66677777776555433333333334456779999999999999989999999998888888999999988887777776
Q ss_pred hhccCcceeecCCCCCcccchHHHHHHHhcCcEEEecceeeEEEEcCCCCEEEEEecCCcEEEcCEEEEccCHHhhhcC
Q 019346 256 QEKHGSKMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYLISSSFSYLKTG 334 (342)
Q Consensus 256 ~~~~g~~~~~~~g~~~~~l~~~l~~~l~~~Gv~i~~~t~V~~I~~~~~g~~~~v~t~~G~~i~a~~VI~At~~~~~~~L 334 (342)
....+....+..|+.+..+++.|.+.+++.|++|++|++|++|..++++.+++|++.+|+++.||+||+|+|+..++.|
T Consensus 292 ~~~~gs~~~~~~G~~~~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~v~~~~G~~~~ad~VI~a~p~~~l~~L 370 (567)
T PLN02612 292 QEKHGSKMAFLDGNPPERLCMPIVDHFQSLGGEVRLNSRIKKIELNDDGTVKHFLLTNGSVVEGDVYVSATPVDILKLL 370 (567)
T ss_pred hccCCceEeeecCCchHHHHHHHHHHHHhcCCEEEeCCeeeEEEECCCCcEEEEEECCCcEEECCEEEECCCHHHHHHh
Confidence 6666777788888766889999999999999999999999999986677666788888989999999999999998865
No 2
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=99.97 E-value=2.7e-29 Score=234.14 Aligned_cols=275 Identities=73% Similarity=1.225 Sum_probs=207.2
Q ss_pred eEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCcceeeeccCCCceeecceeEecCCcccHHHHHHHcCCCccccccc
Q 019346 59 KVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGINDRLQWKE 138 (342)
Q Consensus 59 dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~~gG~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~~gi~~~~~~~~ 138 (342)
+|+|||||++||+||+.|.++|++|+|+|+++++||++.++...+++.+|.|+|++...++++.++++++|++....+..
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~~~~~~ 80 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNMLQLLKELNIEDRLQWKS 80 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeECCCCCEEEcCcceeccCCchHHHHHHHcCCccceeecC
Confidence 58999999999999999999999999999999999999887545688999999999999999999999999976655544
Q ss_pred cceeeeccCCCCCccccCCCCCCCCchhhHHHHHhcCCCCChhHHHHhhhccchhhhcCchhhhhccCCCHHHHHHHcCC
Q 019346 139 HSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEWMRKQGV 218 (342)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~ 218 (342)
....+.....++....+.++. .+.+.+.+..++.......+.++++....+........+.....+.+++.+|+++.+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~ 159 (453)
T TIGR02731 81 HSMIFNQPDKPGTFSRFDFPD-IPAPFNGVAAILRNNDMLTWPEKIKFAIGLLPAIVRGQKYVEEQDKYTVTEWLRKQGV 159 (453)
T ss_pred CceEEecCCCCcceeeccCCC-CCCCHHHHHHHhcCcCCCCHHHHHHHHHHhHHHHhcCccchhhhccCCHHHHHHHcCC
Confidence 444443333333333333322 3334444444443333466666666655443322222222334567999999999999
Q ss_pred ChhHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHhhhhccCcceeecCCCCCcccchHHHHHHHhcCcEEEecceeeEE
Q 019346 219 PDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKI 298 (342)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~l~~~l~~~l~~~Gv~i~~~t~V~~I 298 (342)
+..+.+.++.++...++..+++++++.+.+..+..++....+....+..|+.+..+++.|.+.+.++|++|++|++|++|
T Consensus 160 ~~~~~~~~~~pl~~~~~~~~p~~~S~~~~~~~l~~~~~~~~g~~~~~~~g~~~~~l~~~l~~~l~~~g~~i~l~~~V~~I 239 (453)
T TIGR02731 160 PERVNDEVFIAMSKALNFINPDELSMTVVLTALNRFLQERHGSKMAFLDGAPPERLCQPIVDYITSRGGEVRLNSRLKEI 239 (453)
T ss_pred CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHhcCCCCeeEeecCCChHHHHHHHHHHHHhcCCEEeCCCeeEEE
Confidence 98889999999998988889999999888877766565455555556666556789999999999999999999999999
Q ss_pred EEcCCCCEEEEEecCCc-----EEEcCEEEEccCHHhhhcC
Q 019346 299 ELNDDGTVKNFLLTNGN-----VIDGDAYLISSSFSYLKTG 334 (342)
Q Consensus 299 ~~~~~g~~~~v~t~~G~-----~i~a~~VI~At~~~~~~~L 334 (342)
..++++.+++|++.+|+ ++.||.||+|+|+.++..|
T Consensus 240 ~~~~~~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~~~~~~l 280 (453)
T TIGR02731 240 VLNEDGSVKHFVLADGEGQRRFEVTADAYVSAMPVDIFKLL 280 (453)
T ss_pred EECCCCCEEEEEEecCCCCceeEEECCEEEEcCCHHHHHhh
Confidence 87667767678887665 7999999999999887655
No 3
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=99.95 E-value=4.6e-26 Score=212.11 Aligned_cols=273 Identities=35% Similarity=0.626 Sum_probs=198.3
Q ss_pred eEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCcceeeeccCCCceeecceeEecCCcccHHHHHHHcCCCccccccc
Q 019346 59 KVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGINDRLQWKE 138 (342)
Q Consensus 59 dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~~gG~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~~gi~~~~~~~~ 138 (342)
+|+|||||++|+++|+.|+++|++|+|+|+++.+||++.++....++.+|.|.|++...++++.++++++|+.....+..
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~~~~~lg~~~~~~~~~ 80 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGGKVGSWVDGDGNHIEMGLHVFFGCYANLFRLMKKVGAEDNLLLKE 80 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCceeeeeecCCCceEeeceEEecCchHHHHHHHHHcCCcccccccc
Confidence 58999999999999999999999999999999999999987555788999999999999999999999999986654443
Q ss_pred cceeeeccCCCCCccccCCCCCCCCchhhHHHHHhcCCCCChhHHHHhhhccchhh-h----cC---chhhhhccCCCHH
Q 019346 139 HSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAI-I----GG---QAYVEAQDGLTVQ 210 (342)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~---~~~~~~~~~~~~~ 210 (342)
....+.. ..+....+.+....+.++.....+++ ...+++.++++......... . .. .......+.+++.
T Consensus 81 ~~~~~~~--~~~~~~~~~~~~~~~~P~~~~~~~l~-~~~ls~~dklr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~ 157 (474)
T TIGR02732 81 HTHTFVN--KGGDIGELDFRFATGAPFNGLKAFFT-TSQLKWVDKLRNALALGTSPIVRGLVDYDGAMKTIRDLDKISFA 157 (474)
T ss_pred ceeEEEc--CCCcccccccCCCCCCchhhhHHHhc-CCCCCHHHHHHHHHHhhhhHHHhhccccchhhhhhhhhccccHH
Confidence 3222211 11111111112223344444455553 44567777666544331110 0 00 0122234569999
Q ss_pred HHHHHcCCChhHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHhhhhccCcceeecCCCCCcccchHHHHHHHhcCcEEE
Q 019346 211 EWMRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCLPIVEHIQSLGGEVR 290 (342)
Q Consensus 211 ~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~l~~~l~~~l~~~Gv~i~ 290 (342)
+|+++++.++...+.++++++...++.+++++++......+..+.....+....++.|+....+.+.|.+.++++|++|+
T Consensus 158 ~~l~~~~~~~~~~~~~~~Pll~~~~~~~~~~~Sa~~~~~~~~~~~~~~~~s~~~~~~g~~~~~l~~pl~~~L~~~Gg~i~ 237 (474)
T TIGR02732 158 EWFLSHGGSLGSIKRMWDPIAYALGFIDCENISARCMLTIFMLFAAKTEASKLRMLKGSPDKYLTKPILEYIEARGGKFH 237 (474)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCcceeeeecCCcchhHHHHHHHHHHHCCCEEE
Confidence 99999988877899999999999999999999988876655544444555667777766334467779999999999999
Q ss_pred ecceeeEEEEcC--CCC--EEEEEecCC---cEEEcCEEEEccCHHhhhcC
Q 019346 291 LNSRVQKIELND--DGT--VKNFLLTNG---NVIDGDAYLISSSFSYLKTG 334 (342)
Q Consensus 291 ~~t~V~~I~~~~--~g~--~~~v~t~~G---~~i~a~~VI~At~~~~~~~L 334 (342)
++++|++|..++ ++. +++|++.+| +++.||+||+|+|++.+..|
T Consensus 238 ~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~~~~aD~VVlA~p~~~~~~L 288 (474)
T TIGR02732 238 LRHKVREIKYEKSSDGSTRVTGLIMSKPEGKKVIKADAYVAACDVPGIKRL 288 (474)
T ss_pred CCCEEEEEEEecCCCCceeEEEEEEecCCcceEEECCEEEECCChHHHHhh
Confidence 999999998753 232 556666544 46899999999999988777
No 4
>PLN02487 zeta-carotene desaturase
Probab=99.94 E-value=1.3e-24 Score=203.95 Aligned_cols=276 Identities=32% Similarity=0.564 Sum_probs=198.8
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCcceeeeccCCCceeecceeEecCCcccHHHHHHHcCCCcccc
Q 019346 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGINDRLQ 135 (342)
Q Consensus 56 ~~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~~gG~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~~gi~~~~~ 135 (342)
+..+|+|||||++|+++|+.|.+.|++|+|+|+++.+||.+.++....+..+|+|.|++.+.++++.++++++|++....
T Consensus 74 ~~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG~~~s~~~~~g~~~e~G~h~~~~~~~~~~~ll~~LGl~~~~~ 153 (569)
T PLN02487 74 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVGSFVDKNGNHIEMGLHVFFGCYNNLFRLMKKVGADENLL 153 (569)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCCceeeeeecCCcEEecceeEecCCcHHHHHHHHhcCCccccc
Confidence 34699999999999999999999999999999999999999887655688899999999999999999999999987654
Q ss_pred ccccceeeeccCCCCCccccCCCCCCCCchhhHHHHHhcCCCCChhHHHHhhhccc--hh---hhc---CchhhhhccCC
Q 019346 136 WKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLL--PA---IIG---GQAYVEAQDGL 207 (342)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~~~---~~~~~~~~~~~ 207 (342)
+......+. ...+....+.+....+.++..+..+.. ...+.+.++++...... .. ... ........+..
T Consensus 154 ~~~~~~~~~--~~~g~~~~~~~~~p~~~pl~~~~~~l~-~~~Ls~~dklr~~~~l~~~~~~~al~~~~~~~~~~~~~d~~ 230 (569)
T PLN02487 154 VKDHTHTFV--NKGGDVGELDFRFPVGAPLHGIKAFLT-TNQLEPYDKARNALALATSPVVRALVDPDGAMRDIRDLDDI 230 (569)
T ss_pred ccccceeEE--ecCCEEeeeccCCCCCchhhhHHHHHc-CCCCCHHHHHhhcccccccchhhhccCccccccccccccCC
Confidence 432222121 111111111111112333333444443 33456666665543321 10 000 01122334569
Q ss_pred CHHHHHHHcCCChhHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHhhhhccCcceeecCCCCCcccchHHHHHHHhcCc
Q 019346 208 TVQEWMRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCLPIVEHIQSLGG 287 (342)
Q Consensus 208 ~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~l~~~l~~~l~~~Gv 287 (342)
++.+|+++++.+....+.++++++....+.+++++++......+..+.....+....++.|+....|++.+.+.++++|+
T Consensus 231 sv~~~l~r~~g~~~~~~~l~dPll~~~~~~~~d~~SA~~~~~vl~~~~~~~~~~~l~~~~Gg~~~~l~~pl~~~L~~~Gg 310 (569)
T PLN02487 231 SFSDWFTSHGGTRMSIKRMWDPIAYALGFIDCDNISARCMLTIFSLFATKTEASLLRMLKGSPDVRLSGPIAKYITDRGG 310 (569)
T ss_pred cHHHHHHHhCCCHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhcCCcceeeecCCCchHHHHHHHHHHHHHcCC
Confidence 99999999988777899999999999999999999998887766433223334557788887333699999999999999
Q ss_pred EEEecceeeEEEEcC--CC--CEEEEEe---cCCcEEEcCEEEEccCHHhhhcC
Q 019346 288 EVRLNSRVQKIELND--DG--TVKNFLL---TNGNVIDGDAYLISSSFSYLKTG 334 (342)
Q Consensus 288 ~i~~~t~V~~I~~~~--~g--~~~~v~t---~~G~~i~a~~VI~At~~~~~~~L 334 (342)
+|+++++|.+|..+. ++ .+.+|++ .+++++.||.||+|+|.+.+..|
T Consensus 311 ~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~~~~~aD~VV~A~p~~~~~~L 364 (569)
T PLN02487 311 RFHLRWGCREILYDKSPDGETYVTGLKVSKATEKEIVKADAYVAACDVPGIKRL 364 (569)
T ss_pred EEEeCCceEEEEEecCCCCceeEEEEEEecCCCceEEECCEEEECCCHHHHHHh
Confidence 999999999999853 33 3667877 34457899999999999988777
No 5
>PRK07233 hypothetical protein; Provisional
Probab=99.93 E-value=2.4e-24 Score=200.19 Aligned_cols=255 Identities=27% Similarity=0.385 Sum_probs=175.6
Q ss_pred eEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCcceeeeccCCCceeecceeEecCCcccHHHHHHHcCCCccccccc
Q 019346 59 KVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGINDRLQWKE 138 (342)
Q Consensus 59 dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~~gG~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~~gi~~~~~~~~ 138 (342)
+|+|||||++||+||+.|+++|++|+|||+++++||++.++. .+|+.+|.|+|.+...++++.++++++|++....+..
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~-~~g~~~d~g~~~~~~~~~~~~~l~~~lg~~~~~~~~~ 79 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGLAASFE-FGGLPIERFYHHIFKSDEALLELLDELGLEDKLRWRE 79 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCceeeec-cCCcchhhhhhhhccccHHHHHHHHHcCCCCceeecc
Confidence 689999999999999999999999999999999999998876 4588899999999888899999999999876544433
Q ss_pred cceeeeccCCCCCccccCCCCCCCCchhhHHHHHhcCCCCChhHHHHhhhccchhhhcCchhhhhccCCCHHHHHHHcCC
Q 019346 139 HSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEWMRKQGV 218 (342)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~ 218 (342)
....+..... .. .+ .....+... ..+...+.++......... ......+.+.+++.+|++++ .
T Consensus 80 ~~~~~~~~~~---~~--~~--------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~s~~~~l~~~-~ 142 (434)
T PRK07233 80 TKTGYYVDGK---LY--PL--------GTPLELLRF-PHLSLIDKFRLGLLTLLAR--RIKDWRALDKVPAEEWLRRW-S 142 (434)
T ss_pred CceEEEECCe---Ee--cC--------CCHHHHHcC-CCCCHHHHHHhHHHHHhhh--hcccccccccccHHHHHHHh-c
Confidence 2222222111 00 00 001111111 1112222222221111110 00111234568999999987 4
Q ss_pred ChhHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHhhhhc---cCcceeecCCCCCcccchHHHHHHHhcCcEEEeccee
Q 019346 219 PDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEK---HGSKMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRV 295 (342)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~~~~g~~~~~l~~~l~~~l~~~Gv~i~~~t~V 295 (342)
.....+.++.++....++.+++++++......+....... ....+.++.|| +..+++.|.+.+.+.|++|+++++|
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gG-~~~l~~~l~~~l~~~g~~v~~~~~V 221 (434)
T PRK07233 143 GEGVYEVFWEPLLESKFGDYADDVSAAWLWSRIKRRGNRRYSLFGEKLGYLEGG-FATLIDALAEAIEARGGEIRLGTPV 221 (434)
T ss_pred CHHHHHHHHHHHHhcccCCCccccCHHHHHHHHhhhhccccccCCceEeccCCC-HHHHHHHHHHHHHhcCceEEeCCCe
Confidence 6667788999998888889999999877655443321110 12235667776 7889999999999999999999999
Q ss_pred eEEEEcCCCCEEEEEecCCcEEEcCEEEEccCHHhhhcC
Q 019346 296 QKIELNDDGTVKNFLLTNGNVIDGDAYLISSSFSYLKTG 334 (342)
Q Consensus 296 ~~I~~~~~g~~~~v~t~~G~~i~a~~VI~At~~~~~~~L 334 (342)
++|+.++++ +..++ .+|+++.||+||+|+|+..+..|
T Consensus 222 ~~i~~~~~~-~~~~~-~~~~~~~ad~vI~a~p~~~~~~l 258 (434)
T PRK07233 222 TSVVIDGGG-VTGVE-VDGEEEDFDAVISTAPPPILARL 258 (434)
T ss_pred eEEEEcCCc-eEEEE-eCCceEECCEEEECCCHHHHHhh
Confidence 999975443 43343 56668999999999999877666
No 6
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=99.93 E-value=4.2e-24 Score=199.87 Aligned_cols=259 Identities=15% Similarity=0.230 Sum_probs=172.9
Q ss_pred CeEEEECCCHHHHHHHHHHHHc------CCceEEEecCCCCCcceeeeccCCCceeecceeEecCCcccHHHHHHHcCCC
Q 019346 58 LKVVIAGAGLAGLSTAKYLADA------GHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGIN 131 (342)
Q Consensus 58 ~dv~IiG~G~~G~~~A~~l~~~------g~~v~vle~~~~~gG~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~~gi~ 131 (342)
.+|+|||||++||+||+.|.+. |++|+|||+++++||++.+.. ..++.+|.|+|++...++++.++++++|++
T Consensus 2 ~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~T~~-~~g~~~e~G~~~i~~~~~~~~~l~~~lgl~ 80 (463)
T PRK12416 2 KTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHSVE-EKDFIMESGADSIVARNEHVMPLVKDLNLE 80 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEEEEe-eCCEEEecCcHHHhcCCHHHHHHHHHcCCc
Confidence 3799999999999999999986 379999999999999999976 457889999999988888899999999998
Q ss_pred cccccccc-ceeeeccCCCCCccccCCCCCCCCchhhHHHHHhcCCCCChhHHHHhhhccchhhhcCchhhhhccCCCHH
Q 019346 132 DRLQWKEH-SMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQ 210 (342)
Q Consensus 132 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (342)
....+... ...+... +....+........+.. ...++ ....+++..+++...+..... ....+.+++.
T Consensus 81 ~~~~~~~~~~~~~~~~---~~~~~~p~~~~~~~p~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~------~~~~~~~sv~ 149 (463)
T PRK12416 81 EEMVYNETGISYIYSD---NTLHPIPSDTIFGIPMS-VESLF-SSTLVSTKGKIVALKDFITKN------KEFTKDTSLA 149 (463)
T ss_pred cceecCCCCceEEEEC---CeEEECCCCCeecCCCC-hHHhh-cCCcCCHHHHHHhhhhhccCC------CCCCCCCCHH
Confidence 65433322 1111111 11111111100000011 11111 122233333443333322211 0112568999
Q ss_pred HHHHHcCCChhHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHh-------hh----------hccCcceeecCCCCCcc
Q 019346 211 EWMRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRF-------LQ----------EKHGSKMAFLDGNPPER 273 (342)
Q Consensus 211 ~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~----------~~~g~~~~~~~g~~~~~ 273 (342)
+|+++. +...+.+.++.++...++..++++++....+..+..+ +. ...+..+.++.|| +..
T Consensus 150 ~~l~~~-~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~gG-~~~ 227 (463)
T PRK12416 150 LFLESF-LGKELVERQIAPVLSGVYSGKLNELTMASTLPYLLDYKNKYGSIIKGFEENKKQFQSAGNKKFVSFKGG-LST 227 (463)
T ss_pred HHHHHh-cCHHHHHHHHHHHhcccccCCcccccHHHhhHHHHHHHHhcCcHHHHHHHhhhccCCCCCCceEeeCCC-HHH
Confidence 999876 7788888899999988888888888775433322111 00 0112234556665 678
Q ss_pred cchHHHHHHHhcCcEEEecceeeEEEEcCCCCEEEEEecCCcEEEcCEEEEccCHHhhhcC
Q 019346 274 LCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYLISSSFSYLKTG 334 (342)
Q Consensus 274 l~~~l~~~l~~~Gv~i~~~t~V~~I~~~~~g~~~~v~t~~G~~i~a~~VI~At~~~~~~~L 334 (342)
|++.|.+.+.+ ++|+++++|++|+.++++ +.|++.+|+++.||+||+|+|++.+..|
T Consensus 228 l~~~l~~~l~~--~~i~~~~~V~~I~~~~~~--~~v~~~~g~~~~ad~VI~a~p~~~~~~l 284 (463)
T PRK12416 228 IIDRLEEVLTE--TVVKKGAVTTAVSKQGDR--YEISFANHESIQADYVVLAAPHDIAETL 284 (463)
T ss_pred HHHHHHHhccc--ccEEcCCEEEEEEEcCCE--EEEEECCCCEEEeCEEEECCCHHHHHhh
Confidence 88888888754 689999999999986555 3578888878999999999999988776
No 7
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=99.92 E-value=8.1e-24 Score=197.66 Aligned_cols=259 Identities=26% Similarity=0.341 Sum_probs=168.6
Q ss_pred CeEEEECCCHHHHHHHHHHHHcC--CceEEEecCCCCCcceeeeccCCCceeecceeEecCCcccHHHHHHHcCCCcccc
Q 019346 58 LKVVIAGAGLAGLSTAKYLADAG--HKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGINDRLQ 135 (342)
Q Consensus 58 ~dv~IiG~G~~G~~~A~~l~~~g--~~v~vle~~~~~gG~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~~gi~~~~~ 135 (342)
++|+|||||++||+||+.|+++| ++|+|||+++++||++.+.. .+++.+|.|+|++...++++.++++++|++....
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~~t~~-~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~~~~~ 79 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQTVR-KDGFPIELGPESFLARKPSAPALVKELGLEDELV 79 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceEEEEe-eCCeEEecChHHhcCCcHHHHHHHHHcCCcccee
Confidence 47999999999999999999987 89999999999999999876 4678999999988888888999999999875432
Q ss_pred ccc-cceeeeccCCCCCccccCCCCCCCCchhhHHHHHhcCCCCChhHHHHhhhccchhhhcCchhhhhccCCCHHHHHH
Q 019346 136 WKE-HSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEWMR 214 (342)
Q Consensus 136 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 214 (342)
... ....+... +....+........+. .+..+. ..........++..... ........+.+++.+|++
T Consensus 80 ~~~~~~~~~~~~---g~~~~~p~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~------~~~~~~~~~~~s~~e~l~ 148 (451)
T PRK11883 80 ANTTGQSYIYVN---GKLHPIPPGTVMGIPT-SIAPFL-FAGLVSPIGKLRAAADL------RPPRWKPGQDQSVGAFFR 148 (451)
T ss_pred cCCCCcceEEEC---CeEEECCCCCeeccCC-Cchhhh-cCCCCCHHHHHHhhCcc------cCCCCCCCCCcCHHHHHH
Confidence 221 11111111 1111110000000000 011111 01222222222222111 000011235589999998
Q ss_pred HcCCChhHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHhhh---------------h--ccCcceeecCCCCCcccchH
Q 019346 215 KQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQ---------------E--KHGSKMAFLDGNPPERLCLP 277 (342)
Q Consensus 215 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~--~~g~~~~~~~g~~~~~l~~~ 277 (342)
+. ++..+.+.++.++....+..+++++++......+..... . ..+..+..+.+| +..+++.
T Consensus 149 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G-~~~l~~~ 226 (451)
T PRK11883 149 RR-FGDEVVENLIEPLLSGIYAGDIDTLSLRATFPQLAQAEDKYGSLLRGMRKALPKEKKKTKGVFGTLKGG-LQSLIEA 226 (451)
T ss_pred Hh-ccHHHHHHHHHHhhceeecCChHHccHHHhHHHHHHHHHhcCcHHHHHHhhccccCCCCCCceEeeccH-HHHHHHH
Confidence 75 778888889999988888888888887654433221110 0 112345556665 6678888
Q ss_pred HHHHHHhcCcEEEecceeeEEEEcCCCCEEEEEecCCcEEEcCEEEEccCHHhhhcC
Q 019346 278 IVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYLISSSFSYLKTG 334 (342)
Q Consensus 278 l~~~l~~~Gv~i~~~t~V~~I~~~~~g~~~~v~t~~G~~i~a~~VI~At~~~~~~~L 334 (342)
|.+.+.+. +|+++++|++|+.++++ +.|++.+|+++.||+||+|+|+..+..+
T Consensus 227 l~~~l~~~--~i~~~~~V~~i~~~~~~--~~v~~~~g~~~~~d~vI~a~p~~~~~~l 279 (451)
T PRK11883 227 LEEKLPAG--TIHKGTPVTKIDKSGDG--YEIVLSNGGEIEADAVIVAVPHPVLPSL 279 (451)
T ss_pred HHHhCcCC--eEEeCCEEEEEEEcCCe--EEEEECCCCEEEcCEEEECCCHHHHHHh
Confidence 77776543 89999999999985554 3577888889999999999999988776
No 8
>PRK07208 hypothetical protein; Provisional
Probab=99.92 E-value=1e-23 Score=198.16 Aligned_cols=256 Identities=23% Similarity=0.361 Sum_probs=171.8
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCcceeeeccCCCceeecceeEecCCcccHHHHHHHcCCCcccc
Q 019346 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGINDRLQ 135 (342)
Q Consensus 56 ~~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~~gG~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~~gi~~~~~ 135 (342)
...||+|||||++||+||+.|.++|++|+|+|+++++||++.+.. ..++.+|.|+|++...++.+.+++++++......
T Consensus 3 ~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG~~~s~~-~~g~~~d~G~h~~~~~~~~~~~l~~~l~~~~~~~ 81 (479)
T PRK07208 3 NKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGGISRTVT-YKGNRFDIGGHRFFSKSPEVMDLWNEILPDDDFL 81 (479)
T ss_pred CCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeeec-cCCceEccCCceeccCCHHHHHHHHHhcCCCccc
Confidence 456999999999999999999999999999999999999988765 4678999999999988999999999998633222
Q ss_pred ccccceeeeccCCCCCccccCCCCCCCCchhhHHHHHhcCCCCChhHHHHhhhccchhhhcCchhhhhccCCCHHHHHHH
Q 019346 136 WKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEWMRK 215 (342)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 215 (342)
........... +.+.. + + ... ...+. ...+....+.......... ....+.+++.+|+++
T Consensus 82 ~~~~~~~~~~~---g~~~~--~----p--~~~-~~~l~---~~~~~~~~~~~~~~~~~~~-----~~~~~~~s~~e~l~~ 141 (479)
T PRK07208 82 LRPRLSRIYYR---GKFFD--Y----P--LKA-FDALK---NLGLWRTAKCGASYLKARL-----RPRKEEDSFEDWVIN 141 (479)
T ss_pred cccccceEEEC---CEEec--C----C--cch-hHHHH---hCCHhHHHHHHHHHHHHhc-----CCCCCCCCHHHHHHH
Confidence 11111111111 11111 1 1 110 01111 1122222222211111100 001246899999997
Q ss_pred cCCChhHHHHHHHHHHhhccCCCCCcchHHHHHHHH---------HHhhhh-------------ccCcceeecCCCCCcc
Q 019346 216 QGVPDRVTTEVFIAMSKALNFINPDELSMQCILIAL---------NRFLQE-------------KHGSKMAFLDGNPPER 273 (342)
Q Consensus 216 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~-------------~~g~~~~~~~g~~~~~ 273 (342)
. +...+.+.++.++...++..+++++++.+....+ ...+.. .....+.++.|| +..
T Consensus 142 ~-~g~~~~~~~~~p~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gG-~~~ 219 (479)
T PRK07208 142 R-FGRRLYSTFFKGYTEKVWGVPCDEISADWAAQRIKGLSLGKAIRNALRRSLGLKRRNKEVETSLIEEFRYPKLG-PGQ 219 (479)
T ss_pred h-hCHHHHHHHHHHhhhhhhCCChHHCCChHHhCcccCCCHHHHHHHHhhhcccccccCCCccccceeEEeCCCCC-cch
Confidence 5 7788899999999999999999999887543221 111111 001235566666 789
Q ss_pred cchHHHHHHHhcCcEEEecceeeEEEEcCCCCEEEEEe--cCCc--EEEcCEEEEccCHHhhhcC
Q 019346 274 LCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLL--TNGN--VIDGDAYLISSSFSYLKTG 334 (342)
Q Consensus 274 l~~~l~~~l~~~Gv~i~~~t~V~~I~~~~~g~~~~v~t--~~G~--~i~a~~VI~At~~~~~~~L 334 (342)
|++.|.+.+.+.|++|++|++|++|..++++.+..++. .+|+ ++.||+||+|+|++.+..+
T Consensus 220 l~~~L~~~l~~~g~~i~~~~~V~~I~~~~~~~v~~~~~~~~~g~~~~~~ad~VI~a~p~~~l~~~ 284 (479)
T PRK07208 220 LWETAAEKLEALGGKVVLNAKVVGLHHDGDGRIAVVVVNDTDGTEETVTADQVISSMPLRELVAA 284 (479)
T ss_pred HHHHHHHHHHHcCCEEEeCCEEEEEEEcCCcEEEEEEEEcCCCCEEEEEcCEEEECCCHHHHHHh
Confidence 99999999999999999999999999866665444443 2353 6899999999999866543
No 9
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=99.92 E-value=6.1e-24 Score=191.60 Aligned_cols=251 Identities=25% Similarity=0.402 Sum_probs=173.7
Q ss_pred CeEEEECCCHHHHHHHHHHHHcC--CceEEEecCCCCCcceeeeccCCCceeecceeEecCCcccHHHHHHHcCCCcccc
Q 019346 58 LKVVIAGAGLAGLSTAKYLADAG--HKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGINDRLQ 135 (342)
Q Consensus 58 ~dv~IiG~G~~G~~~A~~l~~~g--~~v~vle~~~~~gG~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~~gi~~~~~ 135 (342)
+.|+|||||++||+|||+|.+++ ..|+|||+.++.||.+.+.. .+|+.+|.|+|.+....+.+.++++++|++..+.
T Consensus 1 ~~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~T~~-~~G~~~e~G~~~f~~~~~~~l~li~eLGled~l~ 79 (444)
T COG1232 1 MKIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRTVK-IDGFLFERGPHHFLARKEEILDLIKELGLEDKLL 79 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEEEEe-eCCEEEeechhheecchHHHHHHHHHhCcHHhhc
Confidence 47999999999999999999998 89999999999999999974 7899999999998866678899999999998776
Q ss_pred cccccee-eeccCCCCCccccCCCCCCCCchhhHHHHHhcCCCCChhHHHHhhhccchhhhcCchhhhhccCCCHHHHHH
Q 019346 136 WKEHSMI-FAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEWMR 214 (342)
Q Consensus 136 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 214 (342)
+...... +... +++..+..+.....+..... +.....+.+..+... +.....+..++.+|++
T Consensus 80 ~~~~~~~~i~~~---gkl~p~P~~~i~~ip~~~~~---------~~~~~~~~~~~~~~~-----~~~~~~~d~sv~~f~r 142 (444)
T COG1232 80 WNSTARKYIYYD---GKLHPIPTPTILGIPLLLLS---------SEAGLARALQEFIRP-----KSWEPKQDISVGEFIR 142 (444)
T ss_pred cCCcccceEeeC---CcEEECCccceeecCCcccc---------chhHHHHHHHhhhcc-----cCCCCCCCcCHHHHHH
Confidence 5543322 1111 11111111110000000000 011111111111111 1112345688999999
Q ss_pred HcCCChhHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHhhhhccC------------------cceeecCCCCCcccch
Q 019346 215 KQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHG------------------SKMAFLDGNPPERLCL 276 (342)
Q Consensus 215 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g------------------~~~~~~~g~~~~~l~~ 276 (342)
++ +.+++.+.++.++..+++..+.+++|+......+..... .++ ..+.+.+|| ++.|++
T Consensus 143 ~~-fG~ev~~~~~~pll~giy~~~~~~LS~~~~~p~~~~~e~-~~~s~~~g~~~~~~~~~~~~~~~~~~~~gG-~~~l~~ 219 (444)
T COG1232 143 RR-FGEEVVERFIEPLLEGIYAGDADKLSAAAAFPILARAER-KYGSLLRGAKKEGLPKQSLKKEKFGYLRGG-LQSLIE 219 (444)
T ss_pred HH-HhHHHHHHHHHHHhhchhcCCHHHhhHHHhcchhhhhhh-hhcchhhhhhhccCcccccccccccccCcc-HHHHHH
Confidence 98 889999999999999999999999998744333222111 111 124445555 778888
Q ss_pred HHHHHHHhcCcEEEecceeeEEEEcCCCCEEEEEecCCcEEEcCEEEEccCHHhhhcC
Q 019346 277 PIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYLISSSFSYLKTG 334 (342)
Q Consensus 277 ~l~~~l~~~Gv~i~~~t~V~~I~~~~~g~~~~v~t~~G~~i~a~~VI~At~~~~~~~L 334 (342)
.|.+.+..+ |+++++|++|.++..+. .+++.+|+.+.||.||+|+|++.+..+
T Consensus 220 al~~~l~~~---i~~~~~V~~i~~~~~~~--~~~~~~g~~~~~D~VI~t~p~~~l~~l 272 (444)
T COG1232 220 ALAEKLEAK---IRTGTEVTKIDKKGAGK--TIVDVGGEKITADGVISTAPLPELARL 272 (444)
T ss_pred HHHHHhhhc---eeecceeeEEEEcCCcc--EEEEcCCceEEcceEEEcCCHHHHHHH
Confidence 888888765 99999999999864444 477788889999999999999988766
No 10
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=99.92 E-value=2.1e-23 Score=176.24 Aligned_cols=259 Identities=19% Similarity=0.292 Sum_probs=172.5
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCcceeeec---cCCCceeecceeEecC-CcccHHHHHHHcCCC
Q 019346 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWK---DGDGDWYETGLHIFFG-AYPNIQNLFGELGIN 131 (342)
Q Consensus 56 ~~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~~gG~~~~~~---~~~~~~~~~G~~~~~~-~~~~~~~l~~~~gi~ 131 (342)
...+|+|||+|++||+|||.|+++ ++|+++|+.++.||...+.. ..++..+|+|.+++.+ .|+++..+++++|++
T Consensus 7 ~r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlGGha~Tv~~~~d~~g~~vDtGfiVyn~~tYpnl~~Lf~~iGv~ 85 (447)
T COG2907 7 PRRKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLGGHANTVAGNTDGGGVFVDTGFIVYNERTYPNLTRLFKTIGVD 85 (447)
T ss_pred CCcceEEEcccchhhhhHHhhhcc-cceEEEeccccccCccceeeccccCCceeecceeEEecCCCcchHHHHHHHcCCC
Confidence 566999999999999999999986 89999999999999988864 4566789999999986 999999999999998
Q ss_pred ccccccccceeeeccCCCCCccccCCCCCCCCchhhHHHHHhcCCCCChhHHHHhhhccchhhh--cCchhhhhccCCCH
Q 019346 132 DRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAII--GGQAYVEAQDGLTV 209 (342)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 209 (342)
.... .+.+.+....+.+ .+... .....++......-......++.+++.+.. ............++
T Consensus 86 t~as----~Msf~v~~d~ggl---Ey~g~-----tgl~~L~aqk~n~l~pRf~~mlaeiLrf~r~~~~~~d~~~~~~~tl 153 (447)
T COG2907 86 TKAS----FMSFSVSLDMGGL---EYSGL-----TGLAGLLAQKRNLLRPRFPCMLAEILRFYRSDLAPSDNAGQGDTTL 153 (447)
T ss_pred Cccc----ceeEEEEecCCce---eeccC-----CCccchhhccccccchhHHHHHHHHHHHhhhhccchhhhcCCCccH
Confidence 6432 2222222222221 11110 001112222222222333333334333333 11222334466899
Q ss_pred HHHHHHcCCChhHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHhh------hhccCcceeecCCCCCcccchHHHHHHH
Q 019346 210 QEWMRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFL------QEKHGSKMAFLDGNPPERLCLPIVEHIQ 283 (342)
Q Consensus 210 ~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~g~~~~~~~g~~~~~l~~~l~~~l~ 283 (342)
.+||+.++++..+.+.++.++..+++.....+++...... +..++ .......|..+.|+ ..+.++.|.+.+
T Consensus 154 ~~~L~~~~f~~af~e~~l~P~~aaiwstp~~d~~~~pa~~-~~~f~~nhGll~l~~rp~wrtV~gg-S~~yvq~laa~~- 230 (447)
T COG2907 154 AQYLKQRNFGRAFVEDFLQPLVAAIWSTPLADASRYPACN-FLVFTDNHGLLYLPKRPTWRTVAGG-SRAYVQRLAADI- 230 (447)
T ss_pred HHHHHhcCccHHHHHHhHHHHHHHHhcCcHhhhhhhhHHH-HHHHHhccCceecCCCCceeEcccc-hHHHHHHHhccc-
Confidence 9999999999999999999999988876666655433222 22222 22233456666665 334444444333
Q ss_pred hcCcEEEecceeeEEEEcCCCCEEEEEecCCcEEEcCEEEEccCHHhhhcC
Q 019346 284 SLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYLISSSFSYLKTG 334 (342)
Q Consensus 284 ~~Gv~i~~~t~V~~I~~~~~g~~~~v~t~~G~~i~a~~VI~At~~~~~~~L 334 (342)
+.+|.++++|..|.+-.+|++ |+..+|++-++|.||+||.++.+..|
T Consensus 231 --~~~i~t~~~V~~l~rlPdGv~--l~~~~G~s~rFD~vViAth~dqAl~m 277 (447)
T COG2907 231 --RGRIETRTPVCRLRRLPDGVV--LVNADGESRRFDAVVIATHPDQALAL 277 (447)
T ss_pred --cceeecCCceeeeeeCCCceE--EecCCCCccccceeeeecChHHHHHh
Confidence 457999999999998888864 66677988899999999988865544
No 11
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=99.91 E-value=2.9e-23 Score=186.41 Aligned_cols=279 Identities=37% Similarity=0.601 Sum_probs=216.0
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCcceeeeccCCCceeecceeEecCCcccHHHHHHHcCCCcccccc
Q 019346 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGINDRLQWK 137 (342)
Q Consensus 58 ~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~~gG~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~~gi~~~~~~~ 137 (342)
++|+|+|||++||+||++|+++|++|+|+|+++++||.+.++...+|...|.|-|.+++.|.++.+++++++++....+.
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk~~s~~~~dg~~~E~glh~f~~~Y~n~~~ll~~~~~~~~~~~~ 80 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGKVASWRDSDGNHVEHGLHVFFGCYYNLLTLLKELPIEDRLQLR 80 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCceeeeeecCCCCeeeeeeEEechhHHHHHHHhhhCCchheeehH
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999998776666
Q ss_pred ccceee-eccCCCCCccccCCCCCCCCchhhHHHHHhcCCCCChhHHHHhhhccchhhhcCchhhhhccCCCHHHHHHHc
Q 019346 138 EHSMIF-AMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEWMRKQ 216 (342)
Q Consensus 138 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 216 (342)
.....+ ..+..++.+.++.... .+.+...+..++... ...+.+++++...+............+.+..++.+|+++.
T Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~-~p~p~~~~~~~l~~~-~~~~~~~~~~~~~l~~~~~g~~~~~~eld~~s~~d~l~~~ 158 (485)
T COG3349 81 EHTKTFVGSGTRPGAIGRFARPD-APQPTNGLKAFLRLP-QLPRREKIRFVLRLGDAPIGADRSLRELDKISFADWLKEK 158 (485)
T ss_pred hhhhhhcccCCCCCcccccccCC-CCCcchhhhhhhhcc-ccCHHHHhHHhhccccccchhHHHHHHHhcccHHHHHHHh
Confidence 655555 5555666665555554 334555555555443 6677777777777665544225566788999999999999
Q ss_pred CCChhHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHhhhhc-cCcceeecCCCCCcccchHHHHHHHhcCcEEEeccee
Q 019346 217 GVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEK-HGSKMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRV 295 (342)
Q Consensus 217 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~g~~~~~l~~~l~~~l~~~Gv~i~~~t~V 295 (342)
+.......+.|.++.....+..++..+.......+..++... .+.......++..+.++..+.+.+.+.|.+++..-+|
T Consensus 159 g~~~~~~k~~~~~~~~~l~f~~~e~~sa~~~lt~~~~~~~~~~~~~i~~~~~g~~~E~~~~p~~~yi~~~G~~v~~~~pv 238 (485)
T COG3349 159 GAREGAYKAAFAPIALALTFIDPEGCSARFFLTILNLFLIVTLEASILRNLRGSPDEVLLQPWTEYIPERGRKVHADYPV 238 (485)
T ss_pred CCCchhHHHHHHHHHHhhcccCcccCcchhHHHHHHHHHHhccCcchhhhhcCCCcceeeehhhhhccccCceeecccee
Confidence 988888889999998888889999999877777766665555 5666667777778899999999999999999999999
Q ss_pred eEEEEcC---CCCEEEEEecCCc---EEEcCEEEEccCHHhhhcC--ccccc
Q 019346 296 QKIELND---DGTVKNFLLTNGN---VIDGDAYLISSSFSYLKTG--KRWHT 339 (342)
Q Consensus 296 ~~I~~~~---~g~~~~v~t~~G~---~i~a~~VI~At~~~~~~~L--~~~~~ 339 (342)
+.|..+. ...+.++... +. .+.+..++.+.+....... ..|..
T Consensus 239 ~~l~l~~~~~~~~~~g~~~~-~~~~e~~~~~~~~~~~~v~~~~~~~ps~W~~ 289 (485)
T COG3349 239 KELDLDGARGLAKVTGGDVT-GPEQEQQAALAVVDAFAVQRFKRDLPSEWPK 289 (485)
T ss_pred eeeeccccccccceEeeeec-CcceEeeehhhhhcccccchHhhcCcccccc
Confidence 9998754 3445566555 42 3444445555444444333 55653
No 12
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=99.91 E-value=3.5e-23 Score=193.85 Aligned_cols=252 Identities=21% Similarity=0.328 Sum_probs=167.7
Q ss_pred CCeEEEECCCHHHHHHHHHHHHc----CCceEEEecCCCCCcceeeeccCCCceeecceeEecCCcccHHHHHHHcCCCc
Q 019346 57 PLKVVIAGAGLAGLSTAKYLADA----GHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGIND 132 (342)
Q Consensus 57 ~~dv~IiG~G~~G~~~A~~l~~~----g~~v~vle~~~~~gG~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~~gi~~ 132 (342)
..||+|||||++||+||+.|.++ |++|+|+|+++++||++.+.. .+|+.+|.|+|++...++++.++++++|++.
T Consensus 2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~t~~-~~g~~~e~G~~~~~~~~~~~~~l~~~lgl~~ 80 (462)
T TIGR00562 2 KKHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQTVK-EDGYLIERGPDSFLERKKSAPDLVKDLGLEH 80 (462)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEEEEe-eCCEEEecCccccccCChHHHHHHHHcCCCc
Confidence 46999999999999999999998 999999999999999999876 5678999999999988888999999999876
Q ss_pred cccccccc-eeeeccCCCCCccccCCCCCCCCchhhHHHHHhcCCCCChhHHHHhhhccchhhhcCchhhhhccCCCHHH
Q 019346 133 RLQWKEHS-MIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQE 211 (342)
Q Consensus 133 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (342)
........ ..+... .+.+.. ++ .. ...+... ....+..+++....... .. .....+++.+
T Consensus 81 ~~~~~~~~~~~~~~~--~g~~~~------~p--~~-~~~~~~~-~~~~~~~~~~~~~~~~~---~~----~~~~d~s~~e 141 (462)
T TIGR00562 81 VLVSDATGQRYVLVN--RGKLMP------VP--TK-IAPFVKT-GLFSLGGKLRAGMDFIR---PA----SPGKDESVEE 141 (462)
T ss_pred ccccCCCCceEEEEC--CCceec------CC--CC-hHHHhcC-CCCCchhhHHhhhhhcc---CC----CCCCCcCHHH
Confidence 54321111 111111 011110 11 10 1111111 12223333322211110 00 0123489999
Q ss_pred HHHHcCCChhHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHh-----------hhhc--------------cCcceeec
Q 019346 212 WMRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRF-----------LQEK--------------HGSKMAFL 266 (342)
Q Consensus 212 ~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~--------------~g~~~~~~ 266 (342)
|+++. +...+.+.++.++...++..+++++++...+..+... .... .+..+..+
T Consensus 142 ~l~~~-~g~~~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (462)
T TIGR00562 142 FVRRR-FGDEVVENLIEPLLSGIYAGDPSKLSLKSTFPKFYQTEQKHGSLILGMKKTRNLPQGSGLQLTAKKQGQDFQTL 220 (462)
T ss_pred HHHHh-cCHHHHHHHHHHHhcccccCCHHHhhHHHHhHHHHHHHHhcCcHHHHHHhhcccCccccccccccccCCceEec
Confidence 99877 6778888899999999998888888887654332111 0000 01112233
Q ss_pred CCCCCcccchHHHHHHHhcCcEEEecceeeEEEEcCCCCEEEEEecCCcEEEcCEEEEccCHHhhhcC
Q 019346 267 DGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYLISSSFSYLKTG 334 (342)
Q Consensus 267 ~g~~~~~l~~~l~~~l~~~Gv~i~~~t~V~~I~~~~~g~~~~v~t~~G~~i~a~~VI~At~~~~~~~L 334 (342)
.+| +..|.+.|.+.+. .++|+++++|++|+.+++++ .|++.+|+++.||+||+|+|+..+..|
T Consensus 221 ~gG-~~~l~~~l~~~l~--~~~i~~~~~V~~I~~~~~~~--~v~~~~g~~~~ad~VI~t~P~~~~~~l 283 (462)
T TIGR00562 221 ATG-LETLPEEIEKRLK--LTKVYKGTKVTKLSHRGSNY--TLELDNGVTVETDSVVVTAPHKAAAGL 283 (462)
T ss_pred chh-HHHHHHHHHHHhc--cCeEEcCCeEEEEEecCCcE--EEEECCCcEEEcCEEEECCCHHHHHHH
Confidence 333 4566666666663 26899999999999855553 477888888999999999999987766
No 13
>PLN02576 protoporphyrinogen oxidase
Probab=99.91 E-value=3.8e-23 Score=195.13 Aligned_cols=259 Identities=22% Similarity=0.367 Sum_probs=170.0
Q ss_pred CCCCCCeEEEECCCHHHHHHHHHHHHc-CCceEEEecCCCCCcceeeeccCCCceeecceeEecCCcccHHHHHHHcCCC
Q 019346 53 RPSKPLKVVIAGAGLAGLSTAKYLADA-GHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGIN 131 (342)
Q Consensus 53 ~~~~~~dv~IiG~G~~G~~~A~~l~~~-g~~v~vle~~~~~gG~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~~gi~ 131 (342)
..+.++||+|||||++||+||++|.++ |++|+|||+++++||++.+.. .+|+.+|.|+|.+...++.+..++++ |++
T Consensus 8 ~~~~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr~~t~~-~~g~~~d~G~~~~~~~~~~~~~l~~~-gl~ 85 (496)
T PLN02576 8 AAASSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGNITSVS-EDGFIWEEGPNSFQPSDPELTSAVDS-GLR 85 (496)
T ss_pred cccCCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCceeEec-cCCeEEecCCchhccCcHHHHHHHHc-CCh
Confidence 345667999999999999999999999 999999999999999999976 46899999999998888888777777 876
Q ss_pred cccccccc-c-eeeeccCCCCCccccCCCCCCCCchhhHHHHHhcCCCCChhHHHHhhhccchhhhcCchhhhhccCCCH
Q 019346 132 DRLQWKEH-S-MIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTV 209 (342)
Q Consensus 132 ~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (342)
....+... . ..... ++.... ++. . ...+. ....+.+.++++......... .. ....+.+++
T Consensus 86 ~~~~~~~~~~~~~~~~---~g~~~~--~p~------~-~~~~~-~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~sv 148 (496)
T PLN02576 86 DDLVFPDPQAPRYVVW---NGKLRP--LPS------N-PIDLP-TFDLLSAPGKIRAGLGAFGWK---RP-PPPGREESV 148 (496)
T ss_pred hheecCCCCceEEEEE---CCEEEE--cCC------C-hHHhc-CcCcCChhHHHHHhHHHhhcc---CC-CCCCCCCcH
Confidence 54433221 1 11111 111110 010 0 11111 122233444443322221110 00 011356899
Q ss_pred HHHHHHcCCChhHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHh---------------hhhc---------------c
Q 019346 210 QEWMRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRF---------------LQEK---------------H 259 (342)
Q Consensus 210 ~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~---------------~ 259 (342)
.+|+++. +...+.+.++.++..+.++.+++++++...+..+... .... .
T Consensus 149 ~~~l~~~-~g~~~~~~~~~p~~~~~~~~~~~~lS~~~~~~~~~~~e~~~gs~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 227 (496)
T PLN02576 149 GEFVRRH-LGDEVFERLIDPFVSGVYAGDPSSLSMKAAFPKLWNLEKRGGSIIGGAIKAIQEAKKNPKPEPRDPRLPKPK 227 (496)
T ss_pred HHHHHHh-cCHHHHHHHHHHHhCceecCCHHHHhHHHHhHHHHHHHHhcCcHHHHHHHhhhhhccccccccccccccccc
Confidence 9999986 8889999999999999999999999887665443221 1000 1
Q ss_pred CcceeecCCCCCcccchHHHHHHHhcCcEEEecceeeEEEEcCCC-CEEEEEecCCc-EEEcCEEEEccCHHhhhcC
Q 019346 260 GSKMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDG-TVKNFLLTNGN-VIDGDAYLISSSFSYLKTG 334 (342)
Q Consensus 260 g~~~~~~~g~~~~~l~~~l~~~l~~~Gv~i~~~t~V~~I~~~~~g-~~~~v~t~~G~-~i~a~~VI~At~~~~~~~L 334 (342)
+.....+.+| +..|++.|.+.+.+ .+|++|++|++|+..+++ +.+.+.+.+|+ ++.||+||+|+|+..+..|
T Consensus 228 ~~~~~~~~gG-~~~L~~~la~~l~~--~~i~l~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~P~~~l~~l 301 (496)
T PLN02576 228 GQTVGSFRGG-LQTLPDALAKRLGK--DKVKLNWKVLSLSKNDDGGYSLTYDTPEGKVNVTAKAVVMTAPLYVVSEM 301 (496)
T ss_pred CCeeEeccch-HHHHHHHHHHhhCc--CcEEcCCEEEEEEECCCCcEEEEEecCCCceeEEeCEEEECCCHHHHHHH
Confidence 1112233444 56777777766521 579999999999986665 43334444563 7999999999999988776
No 14
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=99.88 E-value=8e-21 Score=178.96 Aligned_cols=265 Identities=22% Similarity=0.256 Sum_probs=154.0
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCcceeeeccCCCceeecceeEecCCc--ccHHHHHHHcCCCcc-
Q 019346 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAY--PNIQNLFGELGINDR- 133 (342)
Q Consensus 57 ~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~~gG~~~~~~~~~~~~~~~G~~~~~~~~--~~~~~l~~~~gi~~~- 133 (342)
+.||+|||||++||+||..|+++|++|+|||+++.+||++.++.. +|+.+|.|+|++.... ..+..+++++|++..
T Consensus 1 ~~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~GG~~~t~~~-~G~~fD~G~~~~~~~~~~~~~~~~~~~lg~~~~~ 79 (492)
T TIGR02733 1 ETSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPGGCAGTFRR-RGFTFDVGATQVAGLEPGGIHARIFRELGIPLPE 79 (492)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCccceecc-CCEEEeecceEEEecCcCCHHHHHHHHcCCCCcc
Confidence 369999999999999999999999999999999999999999874 7899999999987542 336788899998732
Q ss_pred ccccccceeeeccCCCCCccccCCCCC-----------CCCch---hhHHHHHh-------cCCC---CChhHHHHhhhc
Q 019346 134 LQWKEHSMIFAMPNKPGEFSRFDFPEV-----------LPAPL---NGILAILR-------NNEM---LTWPEKVKFAIG 189 (342)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~---~~~~~~~~-------~~~~---~~~~~~~~~~~~ 189 (342)
............+. +.. .+.+..+ .+... ..+..... .... ....+.......
T Consensus 80 ~~~~d~~~~~~~~d--g~~-~~~~~~d~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (492)
T TIGR02733 80 AKILDPACAVDLPD--GSE-PIPLWHDPDRWQKERERQFPGSERFWQLCSQLHQSNWRFAGRDPVLPPRNYWDLLQLVSA 156 (492)
T ss_pred cccCCCCcEEEECC--Cce-EeeeecCHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHh
Confidence 11111111111111 100 0110110 11110 01100000 0000 001111000000
Q ss_pred cchhhhcCchhhhhccCCCHHHHHHHcC-CChhHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHhhhhccCcceeecCC
Q 019346 190 LLPAIIGGQAYVEAQDGLTVQEWMRKQG-VPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDG 268 (342)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~l~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g 268 (342)
+... ..........++.+|+++.+ ..+.....++...........+++.+..+....+ .+.....| ..++.|
T Consensus 157 ~~~~----~~~~~~~~~~s~~~~l~~~~~~~~~~lr~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~G--~~~~~G 229 (492)
T TIGR02733 157 LRPD----TLLTGPLSLLTVADLLRLCGLGDDRRLRRFLDLQLKLYSQEDADETAALYGATVL-QMAQAPHG--LWHLHG 229 (492)
T ss_pred cChh----hhhhhhhhhhhHHHHHHHhCCCccHHHHHHHHHHHhhhccCChhhhhHHHHHHHh-hccccCCC--ceeecC
Confidence 0000 00011123478888988764 3444445555433322222344455544432211 11211122 234666
Q ss_pred CCCcccchHHHHHHHhcCcEEEecceeeEEEEcCCCCEEEEEecCC-----cEEEcCEEEEccCHHhhhcC
Q 019346 269 NPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNG-----NVIDGDAYLISSSFSYLKTG 334 (342)
Q Consensus 269 ~~~~~l~~~l~~~l~~~Gv~i~~~t~V~~I~~~~~g~~~~v~t~~G-----~~i~a~~VI~At~~~~~~~L 334 (342)
| ++.|++.|.+.++++|++|+++++|++|..++ +.+..|.+.+| +++.||+||+|+++..+..|
T Consensus 230 G-~~~l~~aL~~~~~~~G~~i~~~~~V~~I~~~~-~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~~~~~~l 298 (492)
T TIGR02733 230 S-MQTLSDRLVEALKRDGGNLLTGQRVTAIHTKG-GRAGWVVVVDSRKQEDLNVKADDVVANLPPQSLLEL 298 (492)
T ss_pred c-HHHHHHHHHHHHHhcCCEEeCCceEEEEEEeC-CeEEEEEEecCCCCceEEEECCEEEECCCHHHHHHh
Confidence 6 78999999999999999999999999998854 43445655444 57999999999999877655
No 15
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=99.87 E-value=8.5e-21 Score=179.33 Aligned_cols=258 Identities=21% Similarity=0.267 Sum_probs=150.4
Q ss_pred EEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCcceeeeccCCCceeecceeEecCCcccHHHHHHHcCCCc--ccccc
Q 019346 60 VVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGIND--RLQWK 137 (342)
Q Consensus 60 v~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~~gG~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~~gi~~--~~~~~ 137 (342)
|||||||++||+||..|+++|++|+|||+++.+||++.++.. .|+.+|.|++++... ..+.++++++|++. .+.+.
T Consensus 1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~~~GG~~~t~~~-~G~~fD~G~~~~~~~-~~~~~l~~~lg~~l~~~l~~~ 78 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPGGRAGVLED-DGFRFDTGPTVITMP-EALEELFALAGRDLADYVELV 78 (502)
T ss_pred CEEECcCHHHHHHHHHHHhCCCcEEEEECCCCCcCceEEEec-CCeEEecCCeEEccc-cHHHHHHHHcCCChhheEEEE
Confidence 699999999999999999999999999999999999999874 789999999988632 44677888888542 22222
Q ss_pred ccceeeeccCCCCCccccCCCCCCCCchhhHHHHHhcCCCCChhHHHHhhhccch-------------h--hhc--Cchh
Q 019346 138 EHSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLP-------------A--IIG--GQAY 200 (342)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~--~~~--~~~~ 200 (342)
.....+.....++.. +.+..........+..++.. ....+.........+.. . ... ....
T Consensus 79 ~~~~~~~~~~~~g~~--~~~~~~~~~~~~~l~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (502)
T TIGR02734 79 PLDPFYRLCWEDGSQ--LDVDNDQEELEAQIARFNPG-DVAGYRRFLDYAERVYREGYRKLGYVPFLSPRDLLRADLPQL 155 (502)
T ss_pred ECCCceEEECCCCCE--EEecCCHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHhHhhHhh
Confidence 211111111111111 11111111000111111000 00000000000000000 0 000 0001
Q ss_pred hhhccCCCHHHHHHHcCCChhHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHhhhhccCcceeecCCCCCcccchHHHH
Q 019346 201 VEAQDGLTVQEWMRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCLPIVE 280 (342)
Q Consensus 201 ~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~l~~~l~~ 280 (342)
.......++.+|+++. +..+....++.. .....+.++.+.+..+.+.. +.... + ...++.|+ ...+++.|.+
T Consensus 156 ~~~~~~~s~~~~~~~~-~~~~~l~~~l~~-~~~~~g~~p~~~~~~~~l~~---~~~~~-~-g~~~~~gG-~~~l~~al~~ 227 (502)
T TIGR02734 156 LALLAWRSLYSKVARF-FSDERLRQAFSF-HALFLGGNPFRTPSIYALIS---ALERE-W-GVWFPRGG-TGALVAAMAK 227 (502)
T ss_pred hhccCcCCHHHHHHhh-cCCHHHHHHhcc-cceeeccCcccchHHHHHHH---HHHhh-c-eEEEcCCC-HHHHHHHHHH
Confidence 1122457788888776 344444444331 12233456666565443322 11111 2 23356665 5789999999
Q ss_pred HHHhcCcEEEecceeeEEEEcCCCCEEEEEecCCcEEEcCEEEEccCHHhh
Q 019346 281 HIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYLISSSFSYL 331 (342)
Q Consensus 281 ~l~~~Gv~i~~~t~V~~I~~~~~g~~~~v~t~~G~~i~a~~VI~At~~~~~ 331 (342)
.++++|++|+++++|++|..+ ++.+++|++.+|+++.||+||+|++...+
T Consensus 228 ~~~~~G~~i~~~~~V~~i~~~-~~~~~~V~~~~g~~~~ad~VI~a~~~~~~ 277 (502)
T TIGR02734 228 LAEDLGGELRLNAEVIRIETE-GGRATAVHLADGERLDADAVVSNADLHHT 277 (502)
T ss_pred HHHHCCCEEEECCeEEEEEee-CCEEEEEEECCCCEEECCEEEECCcHHHH
Confidence 999999999999999999874 45566899999988999999999998544
No 16
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.87 E-value=1.6e-20 Score=175.48 Aligned_cols=264 Identities=20% Similarity=0.253 Sum_probs=147.8
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCcceeeeccCCCceeecceeEecCCcccHHHHHHHcC-CCcc-
Q 019346 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELG-INDR- 133 (342)
Q Consensus 56 ~~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~~gG~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~~g-i~~~- 133 (342)
..+||||||||+.||+||..|+++|++|+||||++.+||++.+.... |+.+|.|++++..... ..++++++ ++..
T Consensus 2 ~~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~GG~a~t~e~~-Gf~fd~G~~~~~~~~~--~~~~~~l~~l~~~~ 78 (487)
T COG1233 2 PMYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGGRARTFELD-GFRFDTGPSWYLMPDP--GPLFRELGNLDADG 78 (487)
T ss_pred CCccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCCCcceEEEecc-ceEeccCcceeecCch--HHHHHHhccCcccc
Confidence 46899999999999999999999999999999999999999998755 9999999987763333 25666666 4432
Q ss_pred ccccccceeeeccCCCCCccccCCCCCCCCchhhHHHHHhcCCCCChhHHHHhhhccchhhhc----Cc-----------
Q 019346 134 LQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIG----GQ----------- 198 (342)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~----------- 198 (342)
+.+......+.....++... ............+..... .....+................ ..
T Consensus 79 l~~~~~~~~~~~~~~~g~~~--~~~~d~~~~~~~~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (487)
T COG1233 79 LDLLPPDPAYRVFLPDGDAI--DVYTDLEATAELLESLEP-GDGEALARYLRLLARLYELLAALLLAPPRSELLLVPDTP 155 (487)
T ss_pred eeeeccCCceeeecCCCCEE--EecCCHHHHHHHHHhhCc-ccHHHHHHHHHHHHHhhHHHHhhcCCCchhhhhhccccH
Confidence 22222222222211211110 000100000000000000 0000111111111000000000 00
Q ss_pred ---hhhhhccCCCHHHHHHHcCCChhHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHhhhhccCcceeecCCCCCcccc
Q 019346 199 ---AYVEAQDGLTVQEWMRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLC 275 (342)
Q Consensus 199 ---~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~l~ 275 (342)
.........+..+++... +..+.....+........ ..+...++ +..+..... ....+.++.|| +..++
T Consensus 156 ~~~l~~~~~~~~~~~~~~~~~-f~~~~~r~~~~~~~~~~~-~~p~~~~a---~~~~~~~~~--~~~G~~~p~GG-~~al~ 227 (487)
T COG1233 156 ERLLRLLGFSLTSALDFFRGR-FGSELLRALLAYSAVYGG-APPSTPPA---LYLLLSHLG--LSGGVFYPRGG-MGALV 227 (487)
T ss_pred HHHHHHHHHhhhhHHHHHHHH-hcCHHHHHHHHHHHHhcC-CCCCchhH---HHHHHHHhc--ccCCeeeeeCC-HHHHH
Confidence 000111224445555544 444444443333222222 34444431 111222222 23335667776 88999
Q ss_pred hHHHHHHHhcCcEEEecceeeEEEEcCCCCEEEEEecCCcEEEcCEEEEccCHHhhhcC
Q 019346 276 LPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYLISSSFSYLKTG 334 (342)
Q Consensus 276 ~~l~~~l~~~Gv~i~~~t~V~~I~~~~~g~~~~v~t~~G~~i~a~~VI~At~~~~~~~L 334 (342)
+.|.+.++++|++|+++++|++|..+ +|+.+++++.+|+.+.+|.||.+........+
T Consensus 228 ~aL~~~~~~~Gg~I~~~~~V~~I~v~-~g~g~~~~~~~g~~~~ad~vv~~~~~~~~~~l 285 (487)
T COG1233 228 DALAELAREHGGEIRTGAEVSQILVE-GGKGVGVRTSDGENIEADAVVSNADPALLARL 285 (487)
T ss_pred HHHHHHHHHcCCEEECCCceEEEEEe-CCcceEEeccccceeccceeEecCchhhhhhh
Confidence 99999999999999999999999984 54455788888878999999999887555444
No 17
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=99.86 E-value=5.4e-20 Score=173.13 Aligned_cols=257 Identities=18% Similarity=0.263 Sum_probs=147.0
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCcceeeeccCCCceeecceeEecCC----ccc-HHHHHHHcCCCc
Q 019346 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGA----YPN-IQNLFGELGIND 132 (342)
Q Consensus 58 ~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~~gG~~~~~~~~~~~~~~~G~~~~~~~----~~~-~~~l~~~~gi~~ 132 (342)
+||||||||++||+||..|+++|++|+||||++.+||++.++.. +|+.+|.|.+.+.+. .++ +.+.+..++...
T Consensus 1 ~dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~~~~~-~G~~fd~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (493)
T TIGR02730 1 YDAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIPGGSAGYFER-EGYRFDVGASMIFGFGDKGTTNLLTRALAAVGRKL 79 (493)
T ss_pred CcEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCCCceeEecc-CCEEEEecchhheecCCcccccHHHHHHHHcCCcc
Confidence 58999999999999999999999999999999999999999774 899999999987533 222 455666666443
Q ss_pred cccccccceeeeccCCCCCccccCCCCCC-----------CCchhhHHHHHhcCCCCChhHHHHhhhcc-----------
Q 019346 133 RLQWKEHSMIFAMPNKPGEFSRFDFPEVL-----------PAPLNGILAILRNNEMLTWPEKVKFAIGL----------- 190 (342)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 190 (342)
..........+..+. +. .+.+..+. +.....+..++..... ........
T Consensus 80 ~~~~~~~~~~~~~~~--g~--~~~~~~d~~~~~~~l~~~~P~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 150 (493)
T TIGR02730 80 ETIPDPVQIHYHLPN--GL--NVKVHREYDDFIQELVAKFPHEKEGIRRFYDECWQ-----VFNCLNSMELLSLEEPRYL 150 (493)
T ss_pred cccCCCccEEEECCC--Ce--eEeeecCHHHHHHHHHHHCchhHHHHHHHHHHHHH-----HHHHHHhhhhccccChHHH
Confidence 221111111121111 10 01111111 1111111111111000 00000000
Q ss_pred chhhhcC---chhhhhccCCCHHHHHHHcCCChhHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHhhhhccCcceeecC
Q 019346 191 LPAIIGG---QAYVEAQDGLTVQEWMRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLD 267 (342)
Q Consensus 191 ~~~~~~~---~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 267 (342)
...+... ..........++.++++++ +.++....++...........+.+.+.......+. ....+ .+.++.
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~-~~~~~l~~~l~~~~~~~~~~p~~~~p~~~~~~~~~---~~~~~-g~~~~~ 225 (493)
T TIGR02730 151 FRVFFKHPLACLGLAKYLPQNAGDIARRY-IRDPGLLKFIDIECFCWSVVPADQTPMINAGMVFS---DRHYG-GINYPK 225 (493)
T ss_pred HHHHhhchhhhhHHHHHhhccHHHHHHHh-cCCHHHHHHHHHHHHhccCCCcccchhhhHHHhhc---ccccc-eEecCC
Confidence 0000000 0000111236677787776 33334444443322222212234544433332211 11122 345566
Q ss_pred CCCCcccchHHHHHHHhcCcEEEecceeeEEEEcCCCCEEEEEecCCcEEEcCEEEEccCHHhh
Q 019346 268 GNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYLISSSFSYL 331 (342)
Q Consensus 268 g~~~~~l~~~l~~~l~~~Gv~i~~~t~V~~I~~~~~g~~~~v~t~~G~~i~a~~VI~At~~~~~ 331 (342)
|+ ...+++.|.+.++++|++|+++++|++|..+ ++.+.+|++.+|+++.||+||+|++++..
T Consensus 226 gG-~~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~-~~~~~gv~~~~g~~~~ad~vV~a~~~~~~ 287 (493)
T TIGR02730 226 GG-VGQIAESLVKGLEKHGGQIRYRARVTKIILE-NGKAVGVKLADGEKIYAKRIVSNATRWDT 287 (493)
T ss_pred Ch-HHHHHHHHHHHHHHCCCEEEeCCeeeEEEec-CCcEEEEEeCCCCEEEcCEEEECCChHHH
Confidence 66 5789999999999999999999999999874 55677899999988999999999877644
No 18
>PLN02268 probable polyamine oxidase
Probab=99.85 E-value=2e-20 Score=173.83 Aligned_cols=244 Identities=21% Similarity=0.295 Sum_probs=136.1
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCcceeeeccCCCceeecceeEecCC--cccHHHHHHHcCCCcccc
Q 019346 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGA--YPNIQNLFGELGINDRLQ 135 (342)
Q Consensus 58 ~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~~gG~~~~~~~~~~~~~~~G~~~~~~~--~~~~~~l~~~~gi~~~~~ 135 (342)
.+|+|||||++||+||+.|.++|++|+|||+++++||++.+.. ..++.+|.|++++.+. ...+.++++++|++....
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GGri~t~~-~~g~~~d~G~~~i~~~~~~~~~~~l~~~lgl~~~~~ 79 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGRVHTDY-SFGFPVDMGASWLHGVCNENPLAPLIGRLGLPLYRT 79 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCceeeecC-cCCcccCCCCeeEeccCCCchHHHHHHHhCCceEec
Confidence 3799999999999999999999999999999999999998865 4578899999999753 334789999999974321
Q ss_pred ccccceeeeccCCCCCccccCCCCCCCCchhhHHHHHhcCCCCChhHHHHhhhccchhhhcCchhhhhccCCCHHHHHHH
Q 019346 136 WKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEWMRK 215 (342)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 215 (342)
.......+.. ....+..+. ......+......+... .. +........ .....+.+++.+|+++
T Consensus 80 ~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~------~~--~~~~~~~~~------~~~~~~~~s~~~~~~~ 142 (435)
T PLN02268 80 SGDNSVLYDH--DLESYALFD-MDGNQVPQELVTKVGET------FE--RILEETEKV------RDEHEEDMSLLQAISI 142 (435)
T ss_pred cCCccccccc--cccccceec-CCCCCCCHHHHHHHHHH------HH--HHHHHHHHH------HhccCCCcCHHHHHHH
Confidence 1111111100 000000000 00001111111111000 00 000000000 0012345788887654
Q ss_pred cCCC------hhHHHHHHHHH---HhhccCCCCCcchHHHHHHHHHHhhhhccCcceeecCCCCCcccchHHHHHHHhcC
Q 019346 216 QGVP------DRVTTEVFIAM---SKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCLPIVEHIQSLG 286 (342)
Q Consensus 216 ~g~~------~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~l~~~l~~~l~~~G 286 (342)
.... ..+.+.++..+ ...++..++++++...... ...+ .|.. ..+.++ +..+ .+.+. .+
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~~~~--~~~~---~g~~-~~~~~G-~~~l----~~~l~-~~ 210 (435)
T PLN02268 143 VLERHPELRLEGLAHEVLQWYLCRMEGWFAADADTISLKSWDQ--EELL---EGGH-GLMVRG-YDPV----INTLA-KG 210 (435)
T ss_pred HhhhCcccccchHHHHHHHHHHHHHHHHhCCChHhCchhhcCC--cccc---CCCc-eeecCC-HHHH----HHHHh-cc
Confidence 3100 11333333222 1234455667666543110 0000 1111 112222 2333 33332 36
Q ss_pred cEEEecceeeEEEEcCCCCEEEEEecCCcEEEcCEEEEccCHHhhhc
Q 019346 287 GEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYLISSSFSYLKT 333 (342)
Q Consensus 287 v~i~~~t~V~~I~~~~~g~~~~v~t~~G~~i~a~~VI~At~~~~~~~ 333 (342)
++|++|++|++|...+++. .|++.+|+++.||+||+|+|+..++.
T Consensus 211 ~~i~~~~~V~~i~~~~~~v--~v~~~~g~~~~ad~VIva~P~~~l~~ 255 (435)
T PLN02268 211 LDIRLNHRVTKIVRRYNGV--KVTVEDGTTFVADAAIIAVPLGVLKA 255 (435)
T ss_pred CceeCCCeeEEEEEcCCcE--EEEECCCcEEEcCEEEEecCHHHHhc
Confidence 7899999999999865653 58888888899999999999998863
No 19
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=99.85 E-value=2.8e-19 Score=165.47 Aligned_cols=255 Identities=30% Similarity=0.461 Sum_probs=167.8
Q ss_pred HHHHHHHHcCCceEEEecCCCCCcceeeeccCC-CceeecceeEecCCcccHHHHHHHcCCCccccccccceeeeccCCC
Q 019346 71 STAKYLADAGHKPLLLEARDVLGGKIAAWKDGD-GDWYETGLHIFFGAYPNIQNLFGELGINDRLQWKEHSMIFAMPNKP 149 (342)
Q Consensus 71 ~~A~~l~~~g~~v~vle~~~~~gG~~~~~~~~~-~~~~~~G~~~~~~~~~~~~~l~~~~gi~~~~~~~~~~~~~~~~~~~ 149 (342)
+||+.|+++|++|+|||+++++||++.+..... +..+|.|+|++.+.++++.++++++|++...........+..+.
T Consensus 1 ~AA~~L~~~G~~v~vlEa~~~~GG~~~t~~~~g~~~~~d~G~~~~~~~~~~~~~l~~~lgl~~~~~~~~~~~~~~~~~-- 78 (419)
T TIGR03467 1 SAAVELARAGARVTLFEARPRLGGRARSFEDGGLGQTIDNGQHVLLGAYTNLLALLRRIGAEPRLQGPRLPLPFYDPG-- 78 (419)
T ss_pred ChHHHHHhCCCceEEEecCCCCCCceeEeecCCCCcceecCCEEEEcccHHHHHHHHHhCCchhhhcccCCcceecCC--
Confidence 589999999999999999999999999876432 34599999999998999999999999986543222222221111
Q ss_pred CCccccCCCCCCCCchhhHHHHHhcCCCCChhHHHHhhhccchhhhcCchhhhhccCCCHHHHHHHcCCChhHHHHHHHH
Q 019346 150 GEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEWMRKQGVPDRVTTEVFIA 229 (342)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~ 229 (342)
+....+... .++.+......+. ....+......+....+....... ....+..++.+|+++++.++.+.+.++.+
T Consensus 79 ~~~~~~~~~-~~~~p~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~s~~~~l~~~~~~~~~~~~~~~p 153 (419)
T TIGR03467 79 GRLSRLRLS-RLPAPLHLARGLL-RAPGLSWADKLALARALLALRRTR---FRALDDTTVGDWLQAAGQSERLIERLWEP 153 (419)
T ss_pred CCceeecCC-CCCCCHHHHHHHh-cCCCCCHHHHHHHHHHHHHHHhcC---ccccCCCCHHHHHHHcCCCHHHHHHHHHH
Confidence 111011110 1122222112222 223334444433332221111000 12345689999999988788888889999
Q ss_pred HHhhccCCCCCcchHHHHHHHHHH-hhhhccCcceeecCCCCCcccc-hHHHHHHHhcCcEEEecceeeEEEEcCCCCEE
Q 019346 230 MSKALNFINPDELSMQCILIALNR-FLQEKHGSKMAFLDGNPPERLC-LPIVEHIQSLGGEVRLNSRVQKIELNDDGTVK 307 (342)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~g~~~~~l~-~~l~~~l~~~Gv~i~~~t~V~~I~~~~~g~~~ 307 (342)
+....+..+++++++.+....+.. +.....+..+.++.|| +..+. +.|.+.++++|++|++|++|++|+.++++..+
T Consensus 154 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~gG-~~~~~~~~l~~~l~~~g~~i~~~~~V~~i~~~~~~~~~ 232 (419)
T TIGR03467 154 LLLSALNTPPERASAALAAKVLRDSFLAGRAASDLLLPRVP-LSELFPEPARRWLDSRGGEVRLGTRVRSIEANAGGIRA 232 (419)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCC-HHHHHHHHHHHHHHHcCCEEEcCCeeeEEEEcCCcceE
Confidence 988888889999998777665533 2222223346666665 44554 55888888899999999999999986655432
Q ss_pred EEEecCCcEEEcCEEEEccCHHhhhcC
Q 019346 308 NFLLTNGNVIDGDAYLISSSFSYLKTG 334 (342)
Q Consensus 308 ~v~t~~G~~i~a~~VI~At~~~~~~~L 334 (342)
+.+.+|+++.||+||+|+|++++..|
T Consensus 233 -~~~~~g~~~~~d~vi~a~p~~~~~~l 258 (419)
T TIGR03467 233 -LVLSGGETLPADAVVLAVPPRHAASL 258 (419)
T ss_pred -EEecCCccccCCEEEEcCCHHHHHHh
Confidence 22346778999999999999988776
No 20
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=99.84 E-value=2.8e-19 Score=165.21 Aligned_cols=260 Identities=20% Similarity=0.267 Sum_probs=157.2
Q ss_pred CCCCCCCeEEEECCCHHHHHHHHHHHHc----CCceEEEecCCCCCcceeeecc-CCCceeecceeEecCCcccHHHHHH
Q 019346 52 PRPSKPLKVVIAGAGLAGLSTAKYLADA----GHKPLLLEARDVLGGKIAAWKD-GDGDWYETGLHIFFGAYPNIQNLFG 126 (342)
Q Consensus 52 ~~~~~~~dv~IiG~G~~G~~~A~~l~~~----g~~v~vle~~~~~gG~~~~~~~-~~~~~~~~G~~~~~~~~~~~~~l~~ 126 (342)
+......+|+|||||++||+||++|++. |++|+|||+.+.+||++.++.. ..|+.++.| +.+...++.+.++++
T Consensus 17 ~~~~~~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~~~~~~~~~~Gy~~~~G-~~~~~~y~~l~~ll~ 95 (576)
T PRK13977 17 PEGVDNKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGSLDGAGNPEKGYVARGG-REMENHFECLWDLFR 95 (576)
T ss_pred CCCCCCCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCCccCcccccCCEEEECC-CCccchHHHHHHHHH
Confidence 3455668999999999999999999996 6799999999999999987543 356666555 445777888888888
Q ss_pred HcCCCccccccccceeeeccCCCCCccccCCCCCCCCchhhHHHHHhcCCCCChhHHHHhhhccchhhhcCchhhhhccC
Q 019346 127 ELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDG 206 (342)
Q Consensus 127 ~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (342)
.++-...........++.....+.....+++.......+ ....+.+..+.+. .+...... .....+.
T Consensus 96 ~ipsle~~g~sv~dd~~~~~~~~p~~s~~Rl~~~~g~~~--------d~~~~~L~~k~r~--~Ll~l~l~---~e~~Ld~ 162 (576)
T PRK13977 96 SIPSLEDPGASVLDEFYWFNKDDPNYSKARLIHKRGEIL--------DTDKFGLSKKDRK--ELLKLLLT---PEEKLDD 162 (576)
T ss_pred hccccCCCCcccccceeeeecCCcccceeeEEcCCCCEE--------ECcCCCCCHHHHH--HHHHHhcc---CHHHhCC
Confidence 874221100000101111111111110011100000000 0001111111111 11111111 1345677
Q ss_pred CCHHHHHHHcCCChhHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHhhhh----ccCcceeecCCCCCcccchHHHHHH
Q 019346 207 LTVQEWMRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQE----KHGSKMAFLDGNPPERLCLPIVEHI 282 (342)
Q Consensus 207 ~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~g~~~~~~~g~~~~~l~~~l~~~l 282 (342)
.++.+|+.+..+. . .|..+....+... +..|+.....++.+++.. .....+.+.++++++.++..|.+.+
T Consensus 163 ~tI~d~f~~~Ff~----t-~Fw~~w~t~FaF~-~whSA~E~rry~~rf~~~~~~l~~~s~l~ft~ynqyeSLV~PL~~~L 236 (576)
T PRK13977 163 KTIEDWFSPEFFE----T-NFWYYWRTMFAFE-KWHSALEMRRYMHRFIHHIGGLPDLSGLKFTKYNQYESLVLPLIKYL 236 (576)
T ss_pred cCHHHHHhhcCch----h-HHHHHHHHHHCCc-hhhHHHHHHHHHHHHHHhhccCCccccccCCCCCchhHHHHHHHHHH
Confidence 9999999985332 2 2333333333333 566777777777776433 2334456677778899999999999
Q ss_pred HhcCcEEEecceeeEEEEc-CC--CCEEEEEec-CCc-----EEEcCEEEEccCHHhh
Q 019346 283 QSLGGEVRLNSRVQKIELN-DD--GTVKNFLLT-NGN-----VIDGDAYLISSSFSYL 331 (342)
Q Consensus 283 ~~~Gv~i~~~t~V~~I~~~-~~--g~~~~v~t~-~G~-----~i~a~~VI~At~~~~~ 331 (342)
+++||+|+++++|++|..+ ++ +.+.+|+.. +|+ ...+|.||+|++..+.
T Consensus 237 e~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~~~~~~~I~l~~~DlVivTnGs~t~ 294 (576)
T PRK13977 237 EDHGVDFQYGTKVTDIDFDITGGKKTATAIHLTRNGKEETIDLTEDDLVFVTNGSITE 294 (576)
T ss_pred HhCCCEEEeCCEEEEEEEcCCCCceEEEEEEEEeCCceeEEEecCCCEEEEeCCcCcc
Confidence 9999999999999999874 23 567778775 332 4567899999987753
No 21
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.84 E-value=8.7e-20 Score=168.64 Aligned_cols=82 Identities=41% Similarity=0.642 Sum_probs=74.3
Q ss_pred CCCCCCeEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCcceeeeccCCCceeecceeEecCCccc-HHHHHHHcCCC
Q 019346 53 RPSKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPN-IQNLFGELGIN 131 (342)
Q Consensus 53 ~~~~~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~~gG~~~~~~~~~~~~~~~G~~~~~~~~~~-~~~l~~~~gi~ 131 (342)
......+|||||||+|||+||..|.+.|++|+|||+++++||++.++....+..+|+|++++.+.+.+ +.-+.+++|++
T Consensus 11 ~~~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGGRI~t~~~~~~~~vd~Gas~~~g~~~npl~~l~~qlgl~ 90 (501)
T KOG0029|consen 11 EAGKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGGRIYTFKSEGGDHVDLGASVLTGVYNNPLALLSKQLGLE 90 (501)
T ss_pred cccCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCceeEEEecCCCCeeecCCceecCcCccHHHHHHHHhCcc
Confidence 45567799999999999999999999999999999999999999999877778899999999999884 67788999998
Q ss_pred ccc
Q 019346 132 DRL 134 (342)
Q Consensus 132 ~~~ 134 (342)
...
T Consensus 91 ~~~ 93 (501)
T KOG0029|consen 91 LYK 93 (501)
T ss_pred cce
Confidence 654
No 22
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=99.83 E-value=6.2e-20 Score=162.09 Aligned_cols=251 Identities=21% Similarity=0.237 Sum_probs=141.7
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCcceeeeccCCCceeecceeEecCCcccHHHHHHHcCCCccc
Q 019346 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGINDRL 134 (342)
Q Consensus 55 ~~~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~~gG~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~~gi~~~~ 134 (342)
...+||||||+|++||++|+.|.+.|++|+|||++++.||++.+... .+...|+|++++.+....+..+++++|++...
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GGR~~t~r~-~~~~~d~gG~~i~p~~~~~l~~~k~~gv~~~~ 83 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGRSLTARA-GGEYTDLGGQYINPTHDALLAYAKEFGVPLEP 83 (450)
T ss_pred CCCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCceeEEEec-cceeeccCCcccCccchhhhhhHHhcCCCCCc
Confidence 56789999999999999999999999999999999999999998876 78889999999988888899999999998765
Q ss_pred cccccceeeeccCCCCCccccCCCCCCCCchhhHHHHHhcCCCCChhHHHHhhhccchhhhcCchhhhhccCCCHHHHHH
Q 019346 135 QWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEWMR 214 (342)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 214 (342)
.+.....+.......... +.-.......+.. .+..................+...+.+.+++..| +
T Consensus 84 fi~~g~~~~~~~~~~~~~---------p~~~~~~~~d~~~----~~~~~~~~a~~~~~~~~~~t~~~~e~~~~~~~~W-~ 149 (450)
T COG1231 84 FIRDGDNVIGYVGSSKST---------PKRSLTAAADVRG----LVAELEAKARSAGELDPGLTPEDRELDLESLAAW-K 149 (450)
T ss_pred eeccCccccccccccccc---------chhccchhhhhcc----hhhhhhhhhhcccccCcccCcchhhhhhHHHHhh-h
Confidence 444322222111111000 0000000000000 0000000000000001111122233344555555 1
Q ss_pred Hc---CCChhHHHHHHHHHHhhcc-C-CCCCcchHHH------HHHHHHHhhhhccCcceeecCCCCCcccchHHHHHHH
Q 019346 215 KQ---GVPDRVTTEVFIAMSKALN-F-INPDELSMQC------ILIALNRFLQEKHGSKMAFLDGNPPERLCLPIVEHIQ 283 (342)
Q Consensus 215 ~~---g~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~------~~~~~~~~~~~~~g~~~~~~~g~~~~~l~~~l~~~l~ 283 (342)
.. +++... ...+. + ..+.+..... ....+...............-|+ ++.+.+.+.+.+
T Consensus 150 ~~~~~~~~~~~--------~a~~~~g~~~~~~~~~~~d~~~~~~~~~~~~~~~~e~~~~~~~~~GG-md~la~Afa~ql- 219 (450)
T COG1231 150 TSSLRGLSRDP--------GARVSPGPIEPGDVSLLHDALPLRSASVVDRGIGGEIRTQMLQRLGG-MDQLAEAFAKQL- 219 (450)
T ss_pred hccccccccCc--------cceeccCCCCcccccchhhhhhhhhhhhccccccccccchhhccCcc-HHHHHHHHHHHh-
Confidence 00 111110 00010 0 1112221111 11111111111111222222233 556666666555
Q ss_pred hcCcEEEecceeeEEEEcCCCCEEEEEecCCcEEEcCEEEEccCHHhhhcC
Q 019346 284 SLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYLISSSFSYLKTG 334 (342)
Q Consensus 284 ~~Gv~i~~~t~V~~I~~~~~g~~~~v~t~~G~~i~a~~VI~At~~~~~~~L 334 (342)
|-.|.++++|.+|.++++|+ .|++.+.++..+|.||+|+|..++.++
T Consensus 220 --~~~I~~~~~V~rI~q~~~gV--~Vt~~~~~~~~ad~~i~tiPl~~l~qI 266 (450)
T COG1231 220 --GTRILLNEPVRRIDQDGDGV--TVTADDVGQYVADYVLVTIPLAILGQI 266 (450)
T ss_pred --hceEEecCceeeEEEcCCeE--EEEeCCcceEEecEEEEecCHHHHhhc
Confidence 66899999999999977775 488888349999999999999999888
No 23
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=99.81 E-value=8.1e-18 Score=154.04 Aligned_cols=258 Identities=15% Similarity=0.191 Sum_probs=149.4
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCcceeeeccC-------------------CCceeecceeEec
Q 019346 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDG-------------------DGDWYETGLHIFF 115 (342)
Q Consensus 55 ~~~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~~gG~~~~~~~~-------------------~~~~~~~G~~~~~ 115 (342)
++++||+|||+|++|+.+|..|++.|++|+++|+++..||+..+.... ..+.+|..++.+.
T Consensus 2 ~~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG~~as~~l~~l~~~f~~~~~~~~~~~~~r~~~iDL~Pk~l~ 81 (443)
T PTZ00363 2 DETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGESASLNLTQLYKKFKPGETPPESLGRNRDWNVDLIPKFIM 81 (443)
T ss_pred CCcceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCcccccccHHHHHHhhcccCCCchhcccccccccccCCeeee
Confidence 357999999999999999999999999999999999999999875211 1122334444443
Q ss_pred CCcccHHHHHHHcCCCccccccccceeeeccCCCCCccccCCCCCCCCchhhHHHHHhcCCCCChhHHHHhhhccchhhh
Q 019346 116 GAYPNIQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAII 195 (342)
Q Consensus 116 ~~~~~~~~l~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (342)
.. ..+.+++...++...+++......+... .++.+.. .|. .....+.. ..+.+.++.+. +++.....
T Consensus 82 ~~-G~lv~lL~~s~v~ryleF~~l~g~~v~~-~~g~~~~------vP~--s~~~~~~s--~ll~l~eKr~l-~kfl~~v~ 148 (443)
T PTZ00363 82 AS-GELVKILLHTDVTRYLEFKVIDGSYVYQ-KEGKIHK------VPA--TDMEALSS--PLMGFFEKNRC-KNFLQYVS 148 (443)
T ss_pred cC-ChHHHHHhhcCccceeeeEEeceEEEEe-cCCeEEE------CCC--CHHHHhhC--CCcchhhHHHH-HHHHHHHH
Confidence 33 3455677778887776665544333320 1111111 111 11111111 11122221111 11111111
Q ss_pred ---cCch-hhh--hccCCCHHHHHHHcCCChhHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHhhh--hccC-cceeec
Q 019346 196 ---GGQA-YVE--AQDGLTVQEWMRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQ--EKHG-SKMAFL 266 (342)
Q Consensus 196 ---~~~~-~~~--~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~g-~~~~~~ 266 (342)
...+ ... ..+..++.+|+++.+++....+.+ .............+.+....+..+..++. ..+| ..+.++
T Consensus 149 ~~~~~~~~~~~~~~~d~~T~~d~L~~~~ls~~~~d~i-~~~ial~~~~~~~~~pa~~tl~ri~~y~~S~~~~g~~p~~yp 227 (443)
T PTZ00363 149 NYDENDPETHKGLNLKTMTMAQLYKKFGLEDNTIDFV-GHAVALYTNDDYLNKPAIETVMRIKLYMDSLSRYGKSPFIYP 227 (443)
T ss_pred hhccCChhhhcccCcccCCHHHHHHHhCCCHHHHHHH-HHHHHhhcccccccCCHHHHHHHHHHHHHHHhhccCCcceee
Confidence 1000 001 124589999999998876654422 22211111001111122233332222221 1222 224555
Q ss_pred CCCCCcccchHHHHHHHhcCcEEEecceeeEEEEcCCCCEEEEEecCCcEEEcCEEEEccC
Q 019346 267 DGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYLISSS 327 (342)
Q Consensus 267 ~g~~~~~l~~~l~~~l~~~Gv~i~~~t~V~~I~~~~~g~~~~v~t~~G~~i~a~~VI~At~ 327 (342)
.+| ...+.+.+.+.+...|++++++++|++|..++++.+++|++.+|++++|++||....
T Consensus 228 ~gG-~g~L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~Ge~i~a~~VV~~~s 287 (443)
T PTZ00363 228 LYG-LGGLPQAFSRLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEGGEVAKCKLVICDPS 287 (443)
T ss_pred CCC-HHHHHHHHHHHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEECCCcEEECCEEEECcc
Confidence 665 679999999999999999999999999988666777889999999999999998543
No 24
>PLN02529 lysine-specific histone demethylase 1
Probab=99.81 E-value=1.6e-18 Score=166.36 Aligned_cols=244 Identities=21% Similarity=0.269 Sum_probs=140.2
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCcceeeeccC-CC--ceeecceeEecCCccc-HHHHHHHcC
Q 019346 54 PSKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDG-DG--DWYETGLHIFFGAYPN-IQNLFGELG 129 (342)
Q Consensus 54 ~~~~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~~gG~~~~~~~~-~~--~~~~~G~~~~~~~~~~-~~~l~~~~g 129 (342)
.....||+|||||++|++||..|+++|++|+|||+++++||++.+.... ++ ..+|.|++++.+...+ +..+.+++|
T Consensus 157 ~~~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~~t~~~~~~g~~~~~DlGaswi~g~~~npl~~la~~lg 236 (738)
T PLN02529 157 EGTEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGGRVYTQKMGRKGQFAAVDLGGSVITGIHANPLGVLARQLS 236 (738)
T ss_pred ccCCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcCceeeecccCCCCceEEecCCeeccccccchHHHHHHHhC
Confidence 3466799999999999999999999999999999999999999887643 22 3789999999877666 778999999
Q ss_pred CCccccccccceeeeccCCCCCccccCCCCCCCCchhhHHHHHhcCCCCChhHHHHhhhccchhhhcCchhhhhccCCCH
Q 019346 130 INDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTV 209 (342)
Q Consensus 130 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (342)
++.... .....++... +...... ... .+...+ ...+.....+..... ...+..++
T Consensus 237 l~~~~~-~~~~~~~~~~---G~~v~~~----~~~---~~~~~~--------~~~l~~~~~l~~~~~------~~~~d~Sl 291 (738)
T PLN02529 237 IPLHKV-RDNCPLYKPD---GALVDKE----IDS---NIEFIF--------NKLLDKVTELRQIMG------GFANDISL 291 (738)
T ss_pred CCcccc-CCCceEEeCC---CcCcchh----hhh---hHHHHH--------HHHHHHHHHHHHhcc------cCccCCCH
Confidence 875422 1211222111 1110000 000 000000 000000000000000 12245778
Q ss_pred HHHHHHcCC-----ChhHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHhhhhccCcceeecCCCCCcccchHHHHHHHh
Q 019346 210 QEWMRKQGV-----PDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCLPIVEHIQS 284 (342)
Q Consensus 210 ~~~l~~~g~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~l~~~l~~~l~~ 284 (342)
.+|+++... .......++......+.+....+++........... ....+.....+.|| +.+|++.|++
T Consensus 292 ~~~le~~~~~~~~~~t~~e~~ll~~~~~~le~a~~~~~s~LSl~~~~~~~-~~e~~G~~~~i~GG-~~~Li~aLA~---- 365 (738)
T PLN02529 292 GSVLERLRQLYGVARSTEERQLLDWHLANLEYANAGCLSDLSAAYWDQDD-PYEMGGDHCFLAGG-NWRLINALCE---- 365 (738)
T ss_pred HHHHHHHHhhhccCCCHHHHHHHHHHHHHhceecCCChHHhhhhHhhhcc-ccccCCceEEECCc-HHHHHHHHHh----
Confidence 888865420 111122233333323333334444433322221110 11223334445554 4566666654
Q ss_pred cCcEEEecceeeEEEEcCCCCEEEEEecCCcEEEcCEEEEccCHHhhh
Q 019346 285 LGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYLISSSFSYLK 332 (342)
Q Consensus 285 ~Gv~i~~~t~V~~I~~~~~g~~~~v~t~~G~~i~a~~VI~At~~~~~~ 332 (342)
++.|++|++|++|..+++++ .|++ +++++.||+||+|+|+.+++
T Consensus 366 -~L~IrLnt~V~~I~~~~dGV--tV~t-~~~~~~AD~VIVTVPlgVLk 409 (738)
T PLN02529 366 -GVPIFYGKTVDTIKYGNDGV--EVIA-GSQVFQADMVLCTVPLGVLK 409 (738)
T ss_pred -cCCEEcCCceeEEEEcCCeE--EEEE-CCEEEEcCEEEECCCHHHHH
Confidence 45699999999999866663 4655 44489999999999999987
No 25
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=99.80 E-value=8.1e-20 Score=170.40 Aligned_cols=61 Identities=15% Similarity=0.120 Sum_probs=52.5
Q ss_pred CCcccchHHHHHHHhcCcEEEecceeeEEEEcCCCCEEEEEecCCcEEEcCEEEEccCHHhhhcC
Q 019346 270 PPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYLISSSFSYLKTG 334 (342)
Q Consensus 270 ~~~~l~~~l~~~l~~~Gv~i~~~t~V~~I~~~~~g~~~~v~t~~G~~i~a~~VI~At~~~~~~~L 334 (342)
+|.+++..|.+.++++|++|+.+++|++|+. ++. +.|+|++| +++||+||+|||+|+..++
T Consensus 181 ~P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~-~~~--~~v~t~~g-~v~A~~VV~Atga~s~~l~ 241 (460)
T TIGR03329 181 QPGLLVRGLRRVALELGVEIHENTPMTGLEE-GQP--AVVRTPDG-QVTADKVVLALNAWMASHF 241 (460)
T ss_pred CHHHHHHHHHHHHHHcCCEEECCCeEEEEee-CCc--eEEEeCCc-EEECCEEEEcccccccccC
Confidence 5889999999999999999999999999975 333 35888888 8999999999999976544
No 26
>PLN02676 polyamine oxidase
Probab=99.79 E-value=4.2e-18 Score=158.98 Aligned_cols=248 Identities=21% Similarity=0.245 Sum_probs=140.0
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHcCC-ceEEEecCCCCCcceeeeccCCCceeecceeEecC----CcccHHHHHHHc
Q 019346 54 PSKPLKVVIAGAGLAGLSTAKYLADAGH-KPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFG----AYPNIQNLFGEL 128 (342)
Q Consensus 54 ~~~~~dv~IiG~G~~G~~~A~~l~~~g~-~v~vle~~~~~gG~~~~~~~~~~~~~~~G~~~~~~----~~~~~~~l~~~~ 128 (342)
.+..+||+|||||++||+||++|++.|. +|+|||+++++||++.+.. ..+..+|.|++++.. ....+.++.+++
T Consensus 23 ~~~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG~~~~~~-~~g~~~d~g~~~~~~~~~~~~~~~~~l~~~~ 101 (487)
T PLN02676 23 AKPSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGGRMRKAN-FAGVSVELGANWVEGVGGPESNPIWELANKL 101 (487)
T ss_pred ccCCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCCcceeec-CCCeEEecCCEEEEcccCcccChHHHHHHhc
Confidence 3456799999999999999999999998 6999999999999998765 467889999999964 345577899999
Q ss_pred CCCcccccccc-c-eeeeccCCCCCccccCCCCCCCCchhhHHHHHhcCCCCChhHHHHhh-hccchhhhcCchhhhhcc
Q 019346 129 GINDRLQWKEH-S-MIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFA-IGLLPAIIGGQAYVEAQD 205 (342)
Q Consensus 129 gi~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 205 (342)
|++........ . .++.. ++... + ......+... ...+... ..+.... . ....+
T Consensus 102 g~~~~~~~~~~~~~~~~~~---~g~~~--------~--~~~~~~~~~~------~~~~~~~~~~~~~~~----~-~~~~~ 157 (487)
T PLN02676 102 KLRTFYSDFDNLSSNIYKQ---DGGLY--------P--KKVVQKSMKV------ADASDEFGENLSISL----S-AKKAV 157 (487)
T ss_pred CCceeecCccccceeEECC---CCCCC--------C--HHHHHHHHHH------HHHHHHHHHHHHHhh----c-ccCCC
Confidence 98754221111 1 11110 11110 0 0001111100 0000000 0000000 0 01112
Q ss_pred CCCH--HHHHHHcCCChhHHHHHHHHHHh-hccCCCCCcchHHHHHHHHHHhhhhccCcceeec--CCCCCcccchHHHH
Q 019346 206 GLTV--QEWMRKQGVPDRVTTEVFIAMSK-ALNFINPDELSMQCILIALNRFLQEKHGSKMAFL--DGNPPERLCLPIVE 280 (342)
Q Consensus 206 ~~~~--~~~l~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~g~~~~~l~~~l~~ 280 (342)
..++ ..++.+.. ...........+.. .....+++++++..... ...+. ..+....++ .+| +.++++.|.+
T Consensus 158 ~~s~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~--~~~~~-~~g~~~~~~~~~~G-~~~l~~~La~ 232 (487)
T PLN02676 158 DISILTAQRLFGQV-PKTPLEMVIDYYNYDYEFAEPPRVTSLKNTEP--NPTFV-DFGEDEYFVADPRG-YESLVYYLAE 232 (487)
T ss_pred CccHHHHHHHHhhC-CCCHHHHHHHHHhccceeccCccccchhhcCc--ccccc-cCCCceEEeecCCC-HHHHHHHHHh
Confidence 2333 22333221 11111111111111 11344556666544321 00111 122222232 333 6788888888
Q ss_pred HHHhc------CcEEEecceeeEEEEcCCCCEEEEEecCCcEEEcCEEEEccCHHhhhc
Q 019346 281 HIQSL------GGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYLISSSFSYLKT 333 (342)
Q Consensus 281 ~l~~~------Gv~i~~~t~V~~I~~~~~g~~~~v~t~~G~~i~a~~VI~At~~~~~~~ 333 (342)
.+.++ +.+|++|++|++|..++++. .|+|.+|++++||+||+|+|+..+..
T Consensus 233 ~~~~~~~~~~~~~~I~l~~~V~~I~~~~~gV--~V~~~~G~~~~a~~VIvtvPl~vLk~ 289 (487)
T PLN02676 233 QFLSTKSGKITDPRLKLNKVVREISYSKNGV--TVKTEDGSVYRAKYVIVSVSLGVLQS 289 (487)
T ss_pred hcccccccccCCCceecCCEeeEEEEcCCcE--EEEECCCCEEEeCEEEEccChHHhcc
Confidence 77543 26799999999999866653 58899998899999999999999875
No 27
>PLN02568 polyamine oxidase
Probab=99.76 E-value=5.8e-17 Score=152.50 Aligned_cols=76 Identities=29% Similarity=0.428 Sum_probs=66.3
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcC-----CceEEEecCCCCCcceeeeccCCCceeecceeEecCC-cccHHHHHHHcC
Q 019346 56 KPLKVVIAGAGLAGLSTAKYLADAG-----HKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGA-YPNIQNLFGELG 129 (342)
Q Consensus 56 ~~~dv~IiG~G~~G~~~A~~l~~~g-----~~v~vle~~~~~gG~~~~~~~~~~~~~~~G~~~~~~~-~~~~~~l~~~~g 129 (342)
+..||+|||||++||+||+.|++.| ++|+|||+++++||++.+.. ..++.+|.|++++.+. ...+.++++++|
T Consensus 4 ~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GGr~~t~~-~~g~~~d~G~~~~~g~~~~~~~~l~~~~g 82 (539)
T PLN02568 4 KKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGGRINTSE-FGGERIEMGATWIHGIGGSPVYKIAQEAG 82 (539)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCCeEEEEE-eCCeEEecCCceeCCCCCCHHHHHHHHhC
Confidence 3469999999999999999999887 89999999999999998876 3578899999999865 345789999999
Q ss_pred CCc
Q 019346 130 IND 132 (342)
Q Consensus 130 i~~ 132 (342)
+..
T Consensus 83 ~~~ 85 (539)
T PLN02568 83 SLE 85 (539)
T ss_pred Ccc
Confidence 854
No 28
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=99.74 E-value=1.9e-16 Score=152.80 Aligned_cols=245 Identities=20% Similarity=0.275 Sum_probs=133.8
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCcceeeeccCC-C--ceeecceeEecCCccc-HHHHHHHcC
Q 019346 54 PSKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGD-G--DWYETGLHIFFGAYPN-IQNLFGELG 129 (342)
Q Consensus 54 ~~~~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~~gG~~~~~~~~~-~--~~~~~G~~~~~~~~~~-~~~l~~~~g 129 (342)
.....+|+|||||++|++||+.|.+.|++|+|+|+++++||++.+..... + ..+|.|++++.+...+ +..+++++|
T Consensus 235 ~~~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GGr~~t~~~~g~~~~~~~d~Gas~i~g~~~npl~~l~~~lg 314 (808)
T PLN02328 235 GVEPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGGRVKTMKMKGDGVVAAADLGGSVLTGINGNPLGVLARQLG 314 (808)
T ss_pred CCCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCCcccccccCCCCcceeccCCceeecCCCccHHHHHHHHcC
Confidence 34567999999999999999999999999999999999999998766432 2 3589999999876554 678999999
Q ss_pred CCccccccccceeeeccCCCCCccccCCCCCCCCchh-hHHHHHhcCCCCChhHHHHhhhccchhhhcCchhhhhccCCC
Q 019346 130 INDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLN-GILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLT 208 (342)
Q Consensus 130 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (342)
++.... .....++.. ++...... .+.... .+..++. ....++.. . .+.. .....+
T Consensus 315 l~~~~~-~~~~~~~~~---dG~~~~~~----~~~~v~~~f~~lL~------~~~klr~~------~---~~~~-~~~D~S 370 (808)
T PLN02328 315 LPLHKV-RDICPLYLP---DGKAVDAE----IDSKIEASFNKLLD------RVCKLRQA------M---IEEV-KSVDVN 370 (808)
T ss_pred CceEec-CCCceEEeC---CCcCcchh----hhhhHHHHHHHHHH------HHHHHHHh------h---hhcc-cccCcC
Confidence 874321 111111111 11110000 010000 0011111 00000000 0 0000 012256
Q ss_pred HHHHHHHc----CCC-hhHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHhhhhccCcceeecCCCCCcccchHHHHHHH
Q 019346 209 VQEWMRKQ----GVP-DRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCLPIVEHIQ 283 (342)
Q Consensus 209 ~~~~l~~~----g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~l~~~l~~~l~ 283 (342)
+.++++.. +.. ......++........+.....+............ ....+.....+.|| +..|++.|++.+
T Consensus 371 Lg~~le~~~~~~~~~~~~~e~~Ll~w~lanlE~~~gs~ls~LSl~~w~qd~-~~e~~G~~~~v~GG-~~~Li~aLa~~L- 447 (808)
T PLN02328 371 LGTALEAFRHVYKVAEDPQERMLLNWHLANLEYANASLMSNLSMAYWDQDD-PYEMGGDHCFIPGG-NDTFVRELAKDL- 447 (808)
T ss_pred HHHHHHHHhhhhccCCCHHHHHHHHHHHHHHhccchhhHHHHHhhhhhccc-cccCCCeEEEECCc-HHHHHHHHHhhC-
Confidence 66766532 111 11111222222111111122222211111110000 01122234445555 667888777655
Q ss_pred hcCcEEEecceeeEEEEcCCCCEEEEEecCCcEEEcCEEEEccCHHhhh
Q 019346 284 SLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYLISSSFSYLK 332 (342)
Q Consensus 284 ~~Gv~i~~~t~V~~I~~~~~g~~~~v~t~~G~~i~a~~VI~At~~~~~~ 332 (342)
.|++|++|++|...++++ .| +.+|+++.||+||+|+|+.+++
T Consensus 448 ----~I~ln~~V~~I~~~~dgV--~V-~~~G~~~~AD~VIvTvPl~vLk 489 (808)
T PLN02328 448 ----PIFYERTVESIRYGVDGV--IV-YAGGQEFHGDMVLCTVPLGVLK 489 (808)
T ss_pred ----CcccCCeeEEEEEcCCeE--EE-EeCCeEEEcCEEEECCCHHHHh
Confidence 489999999999866664 34 5567799999999999999987
No 29
>PLN03000 amine oxidase
Probab=99.74 E-value=1.3e-16 Score=154.05 Aligned_cols=79 Identities=33% Similarity=0.405 Sum_probs=67.7
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCcceeeeccC---CCceeecceeEecCCccc-HHHHHHHcCC
Q 019346 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDG---DGDWYETGLHIFFGAYPN-IQNLFGELGI 130 (342)
Q Consensus 55 ~~~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~~gG~~~~~~~~---~~~~~~~G~~~~~~~~~~-~~~l~~~~gi 130 (342)
....+|+|||||++|++||+.|.+.|++|+|+|+++++||++.+.... .+..+|.|++++.+...+ +..+++++|+
T Consensus 182 ~~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGGRi~T~~~~g~~~~~~~DlGas~i~g~~~npl~~L~~qlgl 261 (881)
T PLN03000 182 SSKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGRVYTKKMEANRVGAAADLGGSVLTGTLGNPLGIIARQLGS 261 (881)
T ss_pred CCCCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCCCcceecccCCCCceEeecCCeEEeCCCccHHHHHHHHcCC
Confidence 356899999999999999999999999999999999999999887633 257799999999877665 5567899998
Q ss_pred Ccc
Q 019346 131 NDR 133 (342)
Q Consensus 131 ~~~ 133 (342)
+..
T Consensus 262 ~l~ 264 (881)
T PLN03000 262 SLY 264 (881)
T ss_pred cee
Confidence 754
No 30
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=99.74 E-value=1.7e-16 Score=138.37 Aligned_cols=258 Identities=22% Similarity=0.248 Sum_probs=167.7
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHcCCc--eEEEecCCCCCcceeeeccCCCceeecceeEecCCcc---cHHHHHHHc
Q 019346 54 PSKPLKVVIAGAGLAGLSTAKYLADAGHK--PLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYP---NIQNLFGEL 128 (342)
Q Consensus 54 ~~~~~dv~IiG~G~~G~~~A~~l~~~g~~--v~vle~~~~~gG~~~~~~~~~~~~~~~G~~~~~~~~~---~~~~l~~~~ 128 (342)
....++|+|+|||++||++||+|++++.+ |+++|+.++.||.+.+....+++++|.|++.+.+..+ ....++.++
T Consensus 8 ~~~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwirS~r~~ng~ifE~GPrtlrpag~~g~~~l~lv~dL 87 (491)
T KOG1276|consen 8 AVSGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIRSDRMQNGFIFEEGPRTLRPAGPGGAETLDLVSDL 87 (491)
T ss_pred ceecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccceeeeccCCCceeeccCCCccCcCCcchhHHHHHHHHc
Confidence 34567999999999999999999999764 5679999999999999777889999999999987776 577899999
Q ss_pred CCCcccccccccee------eeccCC----CCCccccCCCCCCCCchhhHHHHHhcCCCCChhHHHHhhhccchhhhcCc
Q 019346 129 GINDRLQWKEHSMI------FAMPNK----PGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQ 198 (342)
Q Consensus 129 gi~~~~~~~~~~~~------~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (342)
|++..+........ ...+.. |.......+....+.....+..++. +..+.
T Consensus 88 Gl~~e~~~i~~~~paaknr~l~~~~~L~~vP~sl~~s~~~~l~p~~k~L~~a~l~---------------e~fr~----- 147 (491)
T KOG1276|consen 88 GLEDELQPIDISHPAAKNRFLYVPGKLPTVPSSLVGSLKFSLQPFGKPLLEAFLR---------------ELFRK----- 147 (491)
T ss_pred CccceeeecCCCChhhhheeeccCcccccCCcccccccccccCcccchhHHHHHh---------------hhccc-----
Confidence 99865432211110 000000 0000000000000000011111111 11100
Q ss_pred hhhhhccCCCHHHHHHHcCCChhHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHhhhhccCcc----------------
Q 019346 199 AYVEAQDGLTVQEWMRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSK---------------- 262 (342)
Q Consensus 199 ~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~---------------- 262 (342)
....+...+++.+|++++ +..++.+.++++++.+++..++.++++...+..+...-. .+|+.
T Consensus 148 ~~~~~~~dESV~sF~~Rr-fG~eV~d~~isp~i~GiyAgD~~~LSmk~~F~~l~~~Eq-k~Gsi~~G~i~~~~~~~~~k~ 225 (491)
T KOG1276|consen 148 KVSDPSADESVESFARRR-FGKEVADRLISPFIRGIYAGDPSELSMKSSFGKLWKVEQ-KHGSIILGTIRAKFARKRTKK 225 (491)
T ss_pred cCCCCCccccHHHHHHHh-hhHHHHHHHHHHHhCccccCChHHhhHHHHHHHHHHHHH-hccchhHHHHHHHHHhhcCCC
Confidence 001234558999999887 778999999999999999999999999887766533211 11110
Q ss_pred ---------------eeecCCCCCcccchHHHHHHHhcCcEEEecceeeEEEEcC-CCCEEEEEecCCc-EEEcCEEEEc
Q 019346 263 ---------------MAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELND-DGTVKNFLLTNGN-VIDGDAYLIS 325 (342)
Q Consensus 263 ---------------~~~~~g~~~~~l~~~l~~~l~~~Gv~i~~~t~V~~I~~~~-~g~~~~v~t~~G~-~i~a~~VI~A 325 (342)
..-..|+ .+.+.+.+.+.|.+..+.|.+.-++..+.... +++...+++.+++ ....+++.++
T Consensus 226 ~e~~~~~~~~~e~~~~~sl~gG-le~lP~a~~~~L~~~~v~i~~~~~~~~~sk~~~~~~~~tl~~~~~~~~~~~~~~~~t 304 (491)
T KOG1276|consen 226 AETALSAQAKKEKWTMFSLKGG-LETLPKALRKSLGEREVSISLGLKLSGNSKSRSGNWSLTLVDHSGTQRVVVSYDAAT 304 (491)
T ss_pred ccchhhhhhcccccchhhhhhh-HhHhHHHHHHHhcccchhhhcccccccccccccCCceeEeEcCCCceeeeccccccc
Confidence 0111222 45677888888888888999999999887643 4566667777774 4555666678
Q ss_pred cCHHhhhcC
Q 019346 326 SSFSYLKTG 334 (342)
Q Consensus 326 t~~~~~~~L 334 (342)
.+++.+..|
T Consensus 305 ~~~~k~a~l 313 (491)
T KOG1276|consen 305 LPAVKLAKL 313 (491)
T ss_pred cchHHhhhh
Confidence 888877665
No 31
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=99.73 E-value=9.4e-17 Score=142.06 Aligned_cols=75 Identities=37% Similarity=0.522 Sum_probs=65.4
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHcC-CceEEEecCCCCCcceeeeccCCCceeecceeEecC-CcccHHHHHHHcC
Q 019346 54 PSKPLKVVIAGAGLAGLSTAKYLADAG-HKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFG-AYPNIQNLFGELG 129 (342)
Q Consensus 54 ~~~~~dv~IiG~G~~G~~~A~~l~~~g-~~v~vle~~~~~gG~~~~~~~~~~~~~~~G~~~~~~-~~~~~~~l~~~~g 129 (342)
....++|||||||+|||+||.+|.+.| .+|+|||+.+++||++.+....++ .++.|++++.+ ....+.++.+++|
T Consensus 18 ~~~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGRI~ti~~~d~-~ielGAqwihG~~gNpVY~la~~~g 94 (498)
T KOG0685|consen 18 ARGNAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGRIHTIPFADG-VIELGAQWIHGEEGNPVYELAKEYG 94 (498)
T ss_pred ccCCceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCceEeeEEcCCC-eEeecceeecCCCCChHHHHHHHhC
Confidence 455669999999999999999999876 589999999999999999875444 89999999998 5556889999888
No 32
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.69 E-value=2.7e-16 Score=137.07 Aligned_cols=170 Identities=22% Similarity=0.322 Sum_probs=112.6
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCcceeeeccCCCceeecceeEecCCcccHHHHHHHcCCCcccc
Q 019346 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGINDRLQ 135 (342)
Q Consensus 56 ~~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~~gG~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~~gi~~~~~ 135 (342)
+.+||+|||||++||.||..++++|++|+|+|+.+.+|-.+.-. -|+.+-......+.+++..++-...
T Consensus 2 ~~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~s---------GgGrCN~Tn~~~~~~~ls~~p~~~~-- 70 (408)
T COG2081 2 ERFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMS---------GGGRCNFTNSEAPDEFLSRNPGNGH-- 70 (408)
T ss_pred CcceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEec---------CCCCccccccccHHHHHHhCCCcch--
Confidence 46899999999999999999999999999999999887655431 2222222222225556555532210
Q ss_pred ccccceeeeccCCCCCccccCCCCCCCCchhhHHHHHhcCCCCChhHHHHhhhccchhhhcCchhhhhccCCCHHHHHHH
Q 019346 136 WKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEWMRK 215 (342)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 215 (342)
+ +... +...+...+.+|++.
T Consensus 71 ----------------f----------------------------------l~sa----------l~~ft~~d~i~~~e~ 90 (408)
T COG2081 71 ----------------F----------------------------------LKSA----------LARFTPEDFIDWVEG 90 (408)
T ss_pred ----------------H----------------------------------HHHH----------HHhCCHHHHHHHHHh
Confidence 0 0000 011123456677777
Q ss_pred cCCChhHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHhhhhccCcceeecCCCCCcccchHHHHHHHhcCcEEEeccee
Q 019346 216 QGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRV 295 (342)
Q Consensus 216 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~l~~~l~~~l~~~Gv~i~~~t~V 295 (342)
+|+..... ..|. .|+....-..+++.|.+++++.||+|+++++|
T Consensus 91 ~Gi~~~e~----------------------------------~~Gr--~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v 134 (408)
T COG2081 91 LGIALKEE----------------------------------DLGR--MFPDSDKASPIVDALLKELEALGVTIRTRSRV 134 (408)
T ss_pred cCCeeEEc----------------------------------cCce--ecCCccchHHHHHHHHHHHHHcCcEEEecceE
Confidence 66543210 0111 11111113478899999999999999999999
Q ss_pred eEEEEcCCCCEEEEEecCCcEEEcCEEEEccCHHhhhcC
Q 019346 296 QKIELNDDGTVKNFLLTNGNVIDGDAYLISSSFSYLKTG 334 (342)
Q Consensus 296 ~~I~~~~~g~~~~v~t~~G~~i~a~~VI~At~~~~~~~L 334 (342)
.+|+.++++. .+.|++|++++||.+|+||+..+...+
T Consensus 135 ~~v~~~~~~f--~l~t~~g~~i~~d~lilAtGG~S~P~l 171 (408)
T COG2081 135 SSVEKDDSGF--RLDTSSGETVKCDSLILATGGKSWPKL 171 (408)
T ss_pred EeEEecCceE--EEEcCCCCEEEccEEEEecCCcCCCCC
Confidence 9999855444 599999988999999999997665554
No 33
>PLN02976 amine oxidase
Probab=99.68 E-value=3e-15 Score=148.96 Aligned_cols=79 Identities=27% Similarity=0.397 Sum_probs=64.8
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCcceeeeccCCCceeecceeEecCCcc--------c-HHHHH
Q 019346 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYP--------N-IQNLF 125 (342)
Q Consensus 55 ~~~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~~gG~~~~~~~~~~~~~~~G~~~~~~~~~--------~-~~~l~ 125 (342)
...+||+|||||++|+++|+.|.+.|++|+|||+++.+||++.+.....++.++.|++++.+... + +..++
T Consensus 691 ~~~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vGGri~t~~~~~g~pvDlGas~i~G~~~nv~~~r~~np~~~la 770 (1713)
T PLN02976 691 VDRKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGGRVYTDRSSLSVPVDLGASIITGVEADVATERRPDPSSLIC 770 (1713)
T ss_pred CCCCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCCCceeeccccCCceeccCcEEEecccccccccccccHHHHHH
Confidence 34579999999999999999999999999999999999999887654457789999999876432 2 23367
Q ss_pred HHcCCCcc
Q 019346 126 GELGINDR 133 (342)
Q Consensus 126 ~~~gi~~~ 133 (342)
+++|+...
T Consensus 771 ~qlGl~l~ 778 (1713)
T PLN02976 771 AQLGLELT 778 (1713)
T ss_pred HhcCCccc
Confidence 88888753
No 34
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.67 E-value=1.5e-16 Score=143.99 Aligned_cols=62 Identities=23% Similarity=0.344 Sum_probs=52.0
Q ss_pred CcccchHHHHHHHhcCcEEEecceeeEEEEcCCCCEEEEEecCCcEEEcCEEEEccCHHhhhcC
Q 019346 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYLISSSFSYLKTG 334 (342)
Q Consensus 271 ~~~l~~~l~~~l~~~Gv~i~~~t~V~~I~~~~~g~~~~v~t~~G~~i~a~~VI~At~~~~~~~L 334 (342)
|.++++.|.+.++++|++|+++++|++|..+ ++.+.+|+|.+| +++||+||+|+++++..++
T Consensus 146 ~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~-~~~v~gv~~~~g-~i~ad~vV~a~G~~s~~l~ 207 (358)
T PF01266_consen 146 PRRLIQALAAEAQRAGVEIRTGTEVTSIDVD-GGRVTGVRTSDG-EIRADRVVLAAGAWSPQLL 207 (358)
T ss_dssp HHHHHHHHHHHHHHTT-EEEESEEEEEEEEE-TTEEEEEEETTE-EEEECEEEE--GGGHHHHH
T ss_pred ccchhhhhHHHHHHhhhhccccccccchhhc-cccccccccccc-ccccceeEecccccceeee
Confidence 7799999999999999999999999999984 555667999999 5999999999999987644
No 35
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=99.66 E-value=2.3e-16 Score=146.54 Aligned_cols=67 Identities=46% Similarity=0.770 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHcCCceEEEecCCCCCcceeeeccCC-CceeecceeEecCCcccHHHHHHHcCCCcc
Q 019346 67 LAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGD-GDWYETGLHIFFGAYPNIQNLFGELGINDR 133 (342)
Q Consensus 67 ~~G~~~A~~l~~~g~~v~vle~~~~~gG~~~~~~~~~-~~~~~~G~~~~~~~~~~~~~l~~~~gi~~~ 133 (342)
+|||+||++|+++|++|+|||+++++||++.+..... ++.+|.|++++...++.+..++.++++...
T Consensus 1 iaGL~aA~~L~~~G~~v~vlEa~~r~GGr~~t~~~~~~g~~~e~G~~~~~~~~~~~~~~~~~l~~~~~ 68 (450)
T PF01593_consen 1 IAGLAAAYYLAKAGYDVTVLEASDRVGGRIRTFRFDNPGFTFELGAHRFFGMYPNLLNLIDELGLELS 68 (450)
T ss_dssp HHHHHHHHHHHHTTTEEEEEESSSSSBTTS-EEEETTTTEEEESSS-EEETTSHHHHHHHHHHTHHTT
T ss_pred ChHHHHHHHHHhCCCCEEEEEcCCCCCcceEEecCCccceeecCCcccccccchhhHHHHHHhhhccc
Confidence 6999999999999999999999999999999988664 899999999999888889999999987543
No 36
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=99.64 E-value=1.2e-14 Score=127.57 Aligned_cols=75 Identities=19% Similarity=0.243 Sum_probs=64.2
Q ss_pred ccCcceeecCCCCCcccchHHHHHHHhcCcEEEecceeeEEEEcCCCCEEEEEecCCcEEEcCEEEEccCHH-hh-hcC
Q 019346 258 KHGSKMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYLISSSFS-YL-KTG 334 (342)
Q Consensus 258 ~~g~~~~~~~g~~~~~l~~~l~~~l~~~Gv~i~~~t~V~~I~~~~~g~~~~v~t~~G~~i~a~~VI~At~~~-~~-~~L 334 (342)
.....|.|+.|| +..++..+++.+++.|.+|++++.|.+|..+ +|.+++|...+|++++++.||..+..| +. ++|
T Consensus 251 ~~~g~~~Yp~GG-~Gavs~aia~~~~~~GaeI~tka~Vq~Illd-~gka~GV~L~dG~ev~sk~VvSNAt~~~Tf~kLl 327 (561)
T KOG4254|consen 251 GHKGGWGYPRGG-MGAVSFAIAEGAKRAGAEIFTKATVQSILLD-SGKAVGVRLADGTEVRSKIVVSNATPWDTFEKLL 327 (561)
T ss_pred ccCCcccCCCCC-hhHHHHHHHHHHHhccceeeehhhhhheecc-CCeEEEEEecCCcEEEeeeeecCCchHHHHHHhC
Confidence 345568888887 8899999999999999999999999999885 488999999999999999999966555 55 444
No 37
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=99.64 E-value=4e-16 Score=143.80 Aligned_cols=62 Identities=15% Similarity=0.083 Sum_probs=52.7
Q ss_pred CCcccchHHHHHHHhcCcEEEecceeeEEEEcCCCCEEEEEecCCcEEEcCEEEEccCHHhhh
Q 019346 270 PPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYLISSSFSYLK 332 (342)
Q Consensus 270 ~~~~l~~~l~~~l~~~Gv~i~~~t~V~~I~~~~~g~~~~v~t~~G~~i~a~~VI~At~~~~~~ 332 (342)
+|..++..|.+.+.++|++++.+++|++|+..+++.+..|+|.+| ++.|++||+|++++...
T Consensus 181 ~p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~g-~i~a~~vVvaagg~~~~ 242 (407)
T TIGR01373 181 RHDAVAWGYARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTRG-FIGAKKVGVAVAGHSSV 242 (407)
T ss_pred CHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCCc-eEECCEEEECCChhhHH
Confidence 366788889999999999999999999998644556667889889 89999999999998753
No 38
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=99.64 E-value=4.3e-16 Score=144.09 Aligned_cols=63 Identities=19% Similarity=0.262 Sum_probs=52.7
Q ss_pred CCcccchHHHHHHHhcCcEEEecceeeEEEEcCCCCEEEEEecCCcEEEcCEEEEccCHHhhhcC
Q 019346 270 PPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYLISSSFSYLKTG 334 (342)
Q Consensus 270 ~~~~l~~~l~~~l~~~Gv~i~~~t~V~~I~~~~~g~~~~v~t~~G~~i~a~~VI~At~~~~~~~L 334 (342)
+|..++..|.+.+.++|++|+++++|++|+.++ +.+..|+|++| +++||+||+|+++|+..++
T Consensus 199 ~p~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~~-~~~~~v~t~~~-~~~a~~VV~a~G~~~~~l~ 261 (416)
T PRK00711 199 DCQLFTQRLAAMAEQLGVKFRFNTPVDGLLVEG-GRITGVQTGGG-VITADAYVVALGSYSTALL 261 (416)
T ss_pred CHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecC-CEEEEEEeCCc-EEeCCEEEECCCcchHHHH
Confidence 477899999999999999999999999998744 44556778877 8999999999999875443
No 39
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=99.64 E-value=1.1e-15 Score=137.39 Aligned_cols=64 Identities=27% Similarity=0.330 Sum_probs=56.1
Q ss_pred CCcccchHHHHHHHhcCcEEEecceeeEEEEcCCCCEEEEEecCCcE-EEcCEEEEccCHHhhhcC
Q 019346 270 PPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNV-IDGDAYLISSSFSYLKTG 334 (342)
Q Consensus 270 ~~~~l~~~l~~~l~~~Gv~i~~~t~V~~I~~~~~g~~~~v~t~~G~~-i~a~~VI~At~~~~~~~L 334 (342)
+|..++..|.+.++++|+++++|++|+.|++.++| +..+.|.+|++ ++|+.||.|.+.++..++
T Consensus 151 ~~~~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~dg-~~~~~~~~g~~~~~ak~Vin~AGl~Ad~la 215 (429)
T COG0579 151 DPGELTRALAEEAQANGVELRLNTEVTGIEKQSDG-VFVLNTSNGEETLEAKFVINAAGLYADPLA 215 (429)
T ss_pred cHHHHHHHHHHHHHHcCCEEEecCeeeEEEEeCCc-eEEEEecCCcEEEEeeEEEECCchhHHHHH
Confidence 47789999999999999999999999999997776 44588888865 999999999999987665
No 40
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=99.63 E-value=2.6e-15 Score=138.58 Aligned_cols=62 Identities=13% Similarity=0.213 Sum_probs=48.4
Q ss_pred CCcccchHHHHHHHhcCcEEEecceeeEEEEcCCCCEEEEEecCC-----cEEEcCEEEEccCHHhhhc
Q 019346 270 PPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNG-----NVIDGDAYLISSSFSYLKT 333 (342)
Q Consensus 270 ~~~~l~~~l~~~l~~~Gv~i~~~t~V~~I~~~~~g~~~~v~t~~G-----~~i~a~~VI~At~~~~~~~ 333 (342)
++.+++..|.+.++++|++|+++++|++|+.++++ + .+.+.++ .+++||+||+|+++|+..+
T Consensus 195 ~~~~~~~~l~~~a~~~G~~i~~~~~V~~i~~~~~~-~-~v~~~~~~~~~~~~i~a~~vV~a~G~~s~~l 261 (410)
T PRK12409 195 DIHKFTTGLAAACARLGVQFRYGQEVTSIKTDGGG-V-VLTVQPSAEHPSRTLEFDGVVVCAGVGSRAL 261 (410)
T ss_pred CHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCE-E-EEEEEcCCCCccceEecCEEEECCCcChHHH
Confidence 46788899999999999999999999999874443 3 3433322 3799999999999997543
No 41
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=99.63 E-value=2.6e-15 Score=142.48 Aligned_cols=63 Identities=14% Similarity=0.108 Sum_probs=51.5
Q ss_pred CCcccchHHHHHHHhcCcEEEecceeeEEEEcCCCCEEEEEec---CC--cEEEcCEEEEccCHHhhhc
Q 019346 270 PPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT---NG--NVIDGDAYLISSSFSYLKT 333 (342)
Q Consensus 270 ~~~~l~~~l~~~l~~~Gv~i~~~t~V~~I~~~~~g~~~~v~t~---~G--~~i~a~~VI~At~~~~~~~ 333 (342)
+|.+++..+...+.++|++|+++++|++|..+ ++.+++|++. +| .+|+|++||+|+++|+-.+
T Consensus 147 dp~rl~~al~~~A~~~Ga~i~~~t~V~~i~~~-~~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa~~l 214 (546)
T PRK11101 147 DPFRLTAANMLDAKEHGAQILTYHEVTGLIRE-GDTVCGVRVRDHLTGETQEIHAPVVVNAAGIWGQHI 214 (546)
T ss_pred CHHHHHHHHHHHHHhCCCEEEeccEEEEEEEc-CCeEEEEEEEEcCCCcEEEEECCEEEECCChhHHHH
Confidence 47899999999999999999999999999874 4555566652 23 3799999999999997544
No 42
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.61 E-value=1.1e-15 Score=139.68 Aligned_cols=62 Identities=19% Similarity=0.171 Sum_probs=51.4
Q ss_pred CCcccchHHHHHHHhcCcEEEecceeeEEEEcCCCCEEEEEecCCcEEEcCEEEEccCHHhhhcC
Q 019346 270 PPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYLISSSFSYLKTG 334 (342)
Q Consensus 270 ~~~~l~~~l~~~l~~~Gv~i~~~t~V~~I~~~~~g~~~~v~t~~G~~i~a~~VI~At~~~~~~~L 334 (342)
+|.++++.|.+.++++|++++.+++|++|+.++ +.+ .|++.+| ++.||+||+|++.+...++
T Consensus 143 ~p~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~~-~~~-~v~~~~~-~i~a~~vV~aaG~~~~~l~ 204 (380)
T TIGR01377 143 YAEKALRALQELAEAHGATVRDGTKVVEIEPTE-LLV-TVKTTKG-SYQANKLVVTAGAWTSKLL 204 (380)
T ss_pred cHHHHHHHHHHHHHHcCCEEECCCeEEEEEecC-CeE-EEEeCCC-EEEeCEEEEecCcchHHHh
Confidence 377899999999999999999999999998743 333 5778777 8999999999999865443
No 43
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=99.60 E-value=5.2e-14 Score=126.66 Aligned_cols=227 Identities=20% Similarity=0.269 Sum_probs=133.6
Q ss_pred CCeEEEECCCHHHHHHHHHHHHc----CCceEEEecCCCCCcceeeeccCCCceeecceeEecCCcccHHHHHHHcCCCc
Q 019346 57 PLKVVIAGAGLAGLSTAKYLADA----GHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGIND 132 (342)
Q Consensus 57 ~~dv~IiG~G~~G~~~A~~l~~~----g~~v~vle~~~~~gG~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~~gi~~ 132 (342)
..++-|||||+++|+||.+|.+. |.+|.|||+.+..||.+.+.......++-.|++.+...+..++++++.+.-..
T Consensus 2 ~~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GGsldg~g~~~~GYv~RgGR~~~~~~eclwdLls~IPSle 81 (500)
T PF06100_consen 2 NKKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGGSLDGAGDPENGYVIRGGRMMEFHYECLWDLLSSIPSLE 81 (500)
T ss_pred CceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCCcccCCCCCCCCeeecCCccccchhHHHHHHHHhCCCCC
Confidence 46889999999999999999997 56999999999999999887766666666788877778888999998876322
Q ss_pred cccccccceeeeccCCCCCccccCCCCCCCCchhhHHHHHhcCCCCChhHHHHhhhccchhhhcCchhhhhccCCCHHHH
Q 019346 133 RLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEW 212 (342)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (342)
.......+.++............++...-. ..+. ....-.++...++...+-+. .. ...+...++.+|
T Consensus 82 ~p~~SVlDe~~~~n~~~p~~s~~Rli~~~G---~~~~--~~~~~~Ls~k~r~eL~kL~l----~~---E~~L~~~~I~d~ 149 (500)
T PF06100_consen 82 DPGKSVLDEIYWFNKEDPNYSKARLIDKRG---QIVD--TDSKFGLSEKDRMELIKLLL----TP---EEDLGDKRIEDW 149 (500)
T ss_pred CCCCcHHHHHHHhccCCCCCcceeeeccCC---cccc--ccCcCCCCHHHHHHHHHHhc----CC---HHHhCcccHHHh
Confidence 111111111111111111111111100000 0000 00000111122221111111 11 123455677777
Q ss_pred HHHcCCChhHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHhhhhccC----cceeecCCCCCcccchHHHHHHHhcCcE
Q 019346 213 MRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHG----SKMAFLDGNPPERLCLPIVEHIQSLGGE 288 (342)
Q Consensus 213 l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g----~~~~~~~g~~~~~l~~~l~~~l~~~Gv~ 288 (342)
+... .+...|+..+.. .+.+.+.. ++.....++.+++..-.+ ..+.+.+.++++.++..|.+.|+++||+
T Consensus 150 F~~~----FF~SnFW~~W~T-~FAFqpWh-Sa~E~rRyl~Rf~h~~~~l~~l~~l~~T~YNQyeSii~Pl~~~L~~~GV~ 223 (500)
T PF06100_consen 150 FSES----FFESNFWYMWST-MFAFQPWH-SAVEFRRYLHRFIHEIPGLNDLSGLDRTKYNQYESIILPLIRYLKSQGVD 223 (500)
T ss_pred cchh----hhcCchhHhHHH-hhccCcch-hHHHHHHHHHHHHHhcCCCCCccccccCccccHHHHHHHHHHHHHHCCCE
Confidence 7652 333444444433 44444443 556666677777654433 2344555667889999999999999999
Q ss_pred EEecceeeEEEEc
Q 019346 289 VRLNSRVQKIELN 301 (342)
Q Consensus 289 i~~~t~V~~I~~~ 301 (342)
+++||.|+.|..+
T Consensus 224 F~~~t~V~di~~~ 236 (500)
T PF06100_consen 224 FRFNTKVTDIDFD 236 (500)
T ss_pred EECCCEEEEEEEE
Confidence 9999999999874
No 44
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=99.60 E-value=8.6e-15 Score=133.01 Aligned_cols=58 Identities=14% Similarity=0.210 Sum_probs=49.7
Q ss_pred CCcccchHHHHHHHhc-CcEEEecceeeEEEEcCCCCEEEEEecCCcEEEcCEEEEccCHHhhhcC
Q 019346 270 PPERLCLPIVEHIQSL-GGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYLISSSFSYLKTG 334 (342)
Q Consensus 270 ~~~~l~~~l~~~l~~~-Gv~i~~~t~V~~I~~~~~g~~~~v~t~~G~~i~a~~VI~At~~~~~~~L 334 (342)
+|.+++..|.+.+.++ |++|+++++|++|+. + .|+|++| +++||+||+|+++|+..++
T Consensus 143 ~p~~~~~~l~~~~~~~~Gv~i~~~t~V~~i~~--~----~v~t~~g-~i~a~~VV~A~G~~s~~l~ 201 (365)
T TIGR03364 143 EPREAIPALAAYLAEQHGVEFHWNTAVTSVET--G----TVRTSRG-DVHADQVFVCPGADFETLF 201 (365)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEeCCeEEEEec--C----eEEeCCC-cEEeCEEEECCCCChhhhC
Confidence 4788999999998876 999999999999964 2 4888888 7899999999999987655
No 45
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.59 E-value=1.3e-15 Score=138.25 Aligned_cols=61 Identities=26% Similarity=0.431 Sum_probs=43.1
Q ss_pred CcccchHHHHHHHhcCcEEEecceeeEEEEcCCCCEEEEEecCCcEEEcCEEEEccCHHhhh
Q 019346 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYLISSSFSYLK 332 (342)
Q Consensus 271 ~~~l~~~l~~~l~~~Gv~i~~~t~V~~I~~~~~g~~~~v~t~~G~~i~a~~VI~At~~~~~~ 332 (342)
...+++.|.+.++++|++|+++++|.+|+.++++ ...|.+.+++++.||+||+||+..+..
T Consensus 108 a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~-~f~v~~~~~~~~~a~~vILAtGG~S~p 168 (409)
T PF03486_consen 108 ASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDG-VFGVKTKNGGEYEADAVILATGGKSYP 168 (409)
T ss_dssp HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTE-EEEEEETTTEEEEESEEEE----SSSG
T ss_pred HHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCc-eeEeeccCcccccCCEEEEecCCCCcc
Confidence 3468888999999999999999999999985444 457888666699999999999876543
No 46
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=99.58 E-value=7.3e-15 Score=134.06 Aligned_cols=62 Identities=19% Similarity=0.233 Sum_probs=52.7
Q ss_pred CCcccchHHHHHHHhcCcEEEecceeeEEEEcCCCCEEEEEecCCcEEEcCEEEEccCHHhhhcC
Q 019346 270 PPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYLISSSFSYLKTG 334 (342)
Q Consensus 270 ~~~~l~~~l~~~l~~~Gv~i~~~t~V~~I~~~~~g~~~~v~t~~G~~i~a~~VI~At~~~~~~~L 334 (342)
.|.+++..+.+.+.++|++|+++++|++|+.++++ +.|+|.+| ++.||+||+|+++++..++
T Consensus 147 ~p~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~--~~v~~~~g-~~~a~~vV~A~G~~~~~l~ 208 (376)
T PRK11259 147 RPELAIKAHLRLAREAGAELLFNEPVTAIEADGDG--VTVTTADG-TYEAKKLVVSAGAWVKDLL 208 (376)
T ss_pred cHHHHHHHHHHHHHHCCCEEECCCEEEEEEeeCCe--EEEEeCCC-EEEeeEEEEecCcchhhhc
Confidence 37788999999999999999999999999884443 35888888 8999999999999976655
No 47
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=99.56 E-value=2.7e-14 Score=121.08 Aligned_cols=65 Identities=14% Similarity=0.169 Sum_probs=57.3
Q ss_pred CcccchHHHHHHHhcCcEEEecceeeEEEEc-CCCCEEEEEecCCcEEEcCEEEEccCHHhhhcCc
Q 019346 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELN-DDGTVKNFLLTNGNVIDGDAYLISSSFSYLKTGK 335 (342)
Q Consensus 271 ~~~l~~~l~~~l~~~Gv~i~~~t~V~~I~~~-~~g~~~~v~t~~G~~i~a~~VI~At~~~~~~~L~ 335 (342)
+.+-++.+...+.+.|+.|+.++.|+.++.. +.+..+.|.|++|..+.|+++|+|+++|+.++|+
T Consensus 152 a~kslk~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi~klL~ 217 (399)
T KOG2820|consen 152 AAKSLKALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWINKLLP 217 (399)
T ss_pred HHHHHHHHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHHHhhcC
Confidence 6688889999999999999999999999853 4556678999999779999999999999999884
No 48
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=99.55 E-value=1e-14 Score=97.75 Aligned_cols=66 Identities=42% Similarity=0.766 Sum_probs=57.1
Q ss_pred EECCCHHHHHHHHHHHHcCCceEEEecCCCCCcceeeeccCCCceeecceeEecC--CcccHHHHHHHc
Q 019346 62 IAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFG--AYPNIQNLFGEL 128 (342)
Q Consensus 62 IiG~G~~G~~~A~~l~~~g~~v~vle~~~~~gG~~~~~~~~~~~~~~~G~~~~~~--~~~~~~~l~~~~ 128 (342)
|||||++||++|+.|++.|++|+|+|+++.+||.+.+... ++..+|.|+|++.. .++++.++++++
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~~-~g~~~d~g~~~~~~~~~~~~~~~l~~~L 68 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGRARSFRI-PGYRFDLGAHYFFPPDDYPNLFRLLREL 68 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGGGCEEEE-TTEEEETSS-SEEETTSCHHHHHHHHTT
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCcceeEEEE-CCEEEeeccEEEeCCCCchHHHHHHcCC
Confidence 8999999999999999999999999999999999998765 66999999999876 467788887764
No 49
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=99.54 E-value=7.4e-15 Score=134.66 Aligned_cols=59 Identities=22% Similarity=0.339 Sum_probs=50.5
Q ss_pred CcccchHHHHHHHhcCcEEEecceeeEEEEcCCCCEEEEEecCCcEEEcCEEEEccCHHhhh
Q 019346 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYLISSSFSYLK 332 (342)
Q Consensus 271 ~~~l~~~l~~~l~~~Gv~i~~~t~V~~I~~~~~g~~~~v~t~~G~~i~a~~VI~At~~~~~~ 332 (342)
+..+++.|.+.++++|++++++++|++|..++++ + .|++.+| ++.||+||+|++.++..
T Consensus 148 ~~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~~~~-~-~V~~~~g-~i~ad~vV~A~G~~s~~ 206 (393)
T PRK11728 148 YRAVAEAMAELIQARGGEIRLGAEVTALDEHANG-V-VVRTTQG-EYEARTLINCAGLMSDR 206 (393)
T ss_pred HHHHHHHHHHHHHhCCCEEEcCCEEEEEEecCCe-E-EEEECCC-EEEeCEEEECCCcchHH
Confidence 6789999999999999999999999999874443 3 5888888 89999999999998743
No 50
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=99.54 E-value=1.3e-13 Score=128.42 Aligned_cols=63 Identities=22% Similarity=0.253 Sum_probs=53.8
Q ss_pred CCcccchHHHHHHHh----cC--cEEEecceeeEEEEcCCCCEEEEEecCCcEEEcCEEEEccCHHhhhcC
Q 019346 270 PPERLCLPIVEHIQS----LG--GEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYLISSSFSYLKTG 334 (342)
Q Consensus 270 ~~~~l~~~l~~~l~~----~G--v~i~~~t~V~~I~~~~~g~~~~v~t~~G~~i~a~~VI~At~~~~~~~L 334 (342)
+|.+++..+.+.+++ +| ++|+++++|++|+..+++ .+.|+|.+| +++|++||+|+++|+..++
T Consensus 209 d~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~~-~~~V~T~~G-~i~A~~VVvaAG~~S~~La 277 (497)
T PTZ00383 209 DYQKLSESFVKHARRDALVPGKKISINLNTEVLNIERSNDS-LYKIHTNRG-EIRARFVVVSACGYSLLFA 277 (497)
T ss_pred CHHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecCCC-eEEEEECCC-EEEeCEEEECcChhHHHHH
Confidence 477899999999999 77 789999999999984343 457889989 8999999999999987654
No 51
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=99.53 E-value=1.5e-13 Score=123.14 Aligned_cols=238 Identities=16% Similarity=0.163 Sum_probs=135.5
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCcceeeeccCCCceeecceeEecCCcccHHHHHHHcCCCcccccc
Q 019346 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGINDRLQWK 137 (342)
Q Consensus 58 ~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~~gG~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~~gi~~~~~~~ 137 (342)
+||+|||||++|+++|+.|++.|.+|+|+|+++.+||.+.+....+....+.|+|++......+.+++.++.--.. +.
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG~~~~~~~~g~~~~~~G~h~f~t~~~~v~~~~~~~~~~~~--~~ 79 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGGNCYDEVDETILFHQYGPHIFHTNNQYVWDYISPFFELNN--YQ 79 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCceeeecCCCceEEeecceeEecCcHHHHHHHHhhccccc--ee
Confidence 6999999999999999999999999999999999999887754332233588999998777777777766531111 11
Q ss_pred ccceeeeccCCCCCccccCCCCCCCCchhhHHHHHhcCCCCChhHHHHhhhccchhhhcCchhhhhccCCCHHHHH---H
Q 019346 138 EHSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEWM---R 214 (342)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~ 214 (342)
.. .... ..+.+.. .|...+.+..+.... ........+...... . ......++.+|. .
T Consensus 80 ~~-~~~~---~~g~~~~------~P~~~~~i~~l~~~~---~~~~~~~~l~~~~~~----~---~~~~~~~~~e~~d~~~ 139 (377)
T TIGR00031 80 HR-VLAL---YNNLDLT------LPFNFNQFRKLLGVK---DAQELQNFFNAQFKY----G---DHVPLEELQEIADPDI 139 (377)
T ss_pred EE-EEEE---ECCeEEc------cCCCHHHHHHhcccc---hHHHHHHHHHHHhhc----c---cCCCCCCHHHHHHHHH
Confidence 10 1111 1112211 122222233332211 111111111111000 0 011124455555 4
Q ss_pred HcCCChhHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHhhhhccC----cceeecCCCCCcccchHHHHHHHhc-CcEE
Q 019346 215 KQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHG----SKMAFLDGNPPERLCLPIVEHIQSL-GGEV 289 (342)
Q Consensus 215 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g----~~~~~~~g~~~~~l~~~l~~~l~~~-Gv~i 289 (342)
.. +...+.+.++.++....|+.++++++..+....-..+ ....+ ....++.+| -+.|.+.+.++ +++|
T Consensus 140 ~~-~G~~lye~ff~~Yt~K~Wg~~p~el~~~~~~RvP~~~-~~d~~yf~d~~q~~P~~G-----yt~~~~~ml~~~~i~v 212 (377)
T TIGR00031 140 QL-LYQFLYQKVYKPYTVKQWGLPAEEIDPFVIGRVPVVL-SEDSSYFPDRYQGLPKGG-----YTKLFEKMLDHPLIDV 212 (377)
T ss_pred HH-HHHHHHHHhccccCceeeCCChHHCCHHHeEecceEe-cCCCCccccccccccccc-----HHHHHHHHHhcCCCEE
Confidence 44 6778888899999999999999999987653211111 11100 111223222 45566666554 7999
Q ss_pred EecceeeEEEEcCCCCEEEEEecCCcEEEcCEEEEccCHHh
Q 019346 290 RLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYLISSSFSY 330 (342)
Q Consensus 290 ~~~t~V~~I~~~~~g~~~~v~t~~G~~i~a~~VI~At~~~~ 330 (342)
++|+.+..+.. .++. +....+ .+. ++||.+.|...
T Consensus 213 ~l~~~~~~~~~-~~~~---~~~~~~-~~~-~~vi~Tg~id~ 247 (377)
T TIGR00031 213 KLNCHINLLKD-KDSQ---LHFANK-AIR-KPVIYTGLIDQ 247 (377)
T ss_pred EeCCccceeec-cccc---eeeccc-ccc-CcEEEecCchH
Confidence 99997777764 2331 333444 333 78999887764
No 52
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=99.53 E-value=1.4e-14 Score=119.33 Aligned_cols=69 Identities=29% Similarity=0.463 Sum_probs=58.3
Q ss_pred eEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCcceeeeccCCCceeecceeEecCCcccHHHHHHHc
Q 019346 59 KVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGEL 128 (342)
Q Consensus 59 dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~~gG~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~~ 128 (342)
+|+|||+||+|++||+.|+..|++|+|+||..-+||+..+.+. .+..+|.|++++....+.|.++.+.+
T Consensus 3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl-~~g~~DhGAqYfk~~~~~F~~~Ve~~ 71 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRL-DGGRFDHGAQYFKPRDELFLRAVEAL 71 (331)
T ss_pred cEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheecc-CCccccccceeecCCchHHHHHHHHH
Confidence 7999999999999999999999999999999999999988664 44458999998877666665555444
No 53
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=99.53 E-value=2.3e-13 Score=124.65 Aligned_cols=61 Identities=16% Similarity=0.192 Sum_probs=52.2
Q ss_pred CCcccchHHHHHHHhcC-cEEEecceeeEEEEcCCCCEEEEEecCCcEEEcCEEEEccCHHhhhc
Q 019346 270 PPERLCLPIVEHIQSLG-GEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYLISSSFSYLKT 333 (342)
Q Consensus 270 ~~~~l~~~l~~~l~~~G-v~i~~~t~V~~I~~~~~g~~~~v~t~~G~~i~a~~VI~At~~~~~~~ 333 (342)
+|.+++..+.+.+.++| ..+..+++|+.+..+ . ..+.|.|.+| ++.|++||+|+++|+..+
T Consensus 154 ~p~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~-~-~~~~v~t~~g-~i~a~~vv~a~G~~~~~l 215 (387)
T COG0665 154 DPRLLTRALAAAAEELGVVIIEGGTPVTSLERD-G-RVVGVETDGG-TIEADKVVLAAGAWAGEL 215 (387)
T ss_pred CHHHHHHHHHHHHHhcCCeEEEccceEEEEEec-C-cEEEEEeCCc-cEEeCEEEEcCchHHHHH
Confidence 47899999999999999 577779999999874 3 5668999999 599999999999997653
No 54
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=99.50 E-value=9.5e-14 Score=135.23 Aligned_cols=62 Identities=15% Similarity=0.318 Sum_probs=52.0
Q ss_pred CCcccchHHHHHHHhcCcEEEecceeeEEEEcCCCCEEEEEecCCcEEEcCEEEEccCHHhhhcC
Q 019346 270 PPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYLISSSFSYLKTG 334 (342)
Q Consensus 270 ~~~~l~~~l~~~l~~~Gv~i~~~t~V~~I~~~~~g~~~~v~t~~G~~i~a~~VI~At~~~~~~~L 334 (342)
.|..++..|.+.+.+ |++++++++|++|...+++ + .|+|.+|..+.|++||+|++.++..++
T Consensus 406 ~p~~l~~aL~~~a~~-Gv~i~~~~~V~~i~~~~~~-~-~v~t~~g~~~~ad~VV~A~G~~s~~l~ 467 (662)
T PRK01747 406 CPAELCRALLALAGQ-QLTIHFGHEVARLEREDDG-W-QLDFAGGTLASAPVVVLANGHDAARFA 467 (662)
T ss_pred CHHHHHHHHHHhccc-CcEEEeCCEeeEEEEeCCE-E-EEEECCCcEEECCEEEECCCCCccccc
Confidence 477899999999999 9999999999999875443 3 488888866789999999999986544
No 55
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=99.47 E-value=7.2e-13 Score=127.44 Aligned_cols=65 Identities=11% Similarity=0.071 Sum_probs=52.4
Q ss_pred CCcccchHHHHHHHhcCcEEEecceeeEEEEcC-CCCEEEEEe---cCCc--EEEcCEEEEccCHHhhhcC
Q 019346 270 PPERLCLPIVEHIQSLGGEVRLNSRVQKIELND-DGTVKNFLL---TNGN--VIDGDAYLISSSFSYLKTG 334 (342)
Q Consensus 270 ~~~~l~~~l~~~l~~~Gv~i~~~t~V~~I~~~~-~g~~~~v~t---~~G~--~i~a~~VI~At~~~~~~~L 334 (342)
+|.+++..+.+.+.++|++|+.+++|++|..++ ++.+.+|++ .+|+ +++||.||+|+++|+-..+
T Consensus 230 dp~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaws~~l~ 300 (627)
T PLN02464 230 NDSRLNVALACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVNAAGPFCDEVR 300 (627)
T ss_pred cHHHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEECCCHhHHHHH
Confidence 588999999999999999999999999998754 455556554 2343 6899999999999975443
No 56
>PRK07121 hypothetical protein; Validated
Probab=99.47 E-value=3.7e-12 Score=120.09 Aligned_cols=60 Identities=20% Similarity=0.376 Sum_probs=48.7
Q ss_pred cccchHHHHHHHhcCcEEEecceeeEEEEcCCCCEEEEEecC-Cc--EEEc-CEEEEccCHHhh
Q 019346 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTN-GN--VIDG-DAYLISSSFSYL 331 (342)
Q Consensus 272 ~~l~~~l~~~l~~~Gv~i~~~t~V~~I~~~~~g~~~~v~t~~-G~--~i~a-~~VI~At~~~~~ 331 (342)
..++..|.+.+++.|++|+++++|++|..++++.+.+|+..+ |+ +++| +.||+||+.+..
T Consensus 177 ~~~~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~~~~~i~a~k~VVlAtGg~~~ 240 (492)
T PRK07121 177 AMLMDPLAKRAAALGVQIRYDTRATRLIVDDDGRVVGVEARRYGETVAIRARKGVVLAAGGFAM 240 (492)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCCEEEEEEEeCCcEEEEEeCCEEEECCCCcCc
Confidence 467888999999999999999999999876566777776643 32 6889 999999998763
No 57
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=99.46 E-value=9.6e-13 Score=112.73 Aligned_cols=60 Identities=12% Similarity=0.135 Sum_probs=46.9
Q ss_pred CcccchHHHHHHHhcCcEEEecceeeEEEEcCCCCEEEEEecC-----------CcEEEcCEEEEccCHHh
Q 019346 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTN-----------GNVIDGDAYLISSSFSY 330 (342)
Q Consensus 271 ~~~l~~~l~~~l~~~Gv~i~~~t~V~~I~~~~~g~~~~v~t~~-----------G~~i~a~~VI~At~~~~ 330 (342)
+..+...|.+.+.+.|++|++++.|+++..++++.+.+|.+.. ..+++|+.||.||+.++
T Consensus 103 ~~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a 173 (257)
T PRK04176 103 SVEAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDA 173 (257)
T ss_pred HHHHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCc
Confidence 3467778888999999999999999999875554666665431 24799999999998764
No 58
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=99.46 E-value=4.5e-13 Score=107.21 Aligned_cols=42 Identities=43% Similarity=0.616 Sum_probs=38.6
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCcce
Q 019346 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKI 96 (342)
Q Consensus 55 ~~~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~~gG~~ 96 (342)
-.+.||+|||||++||+|||+|+++|.+|+|+|++-.+||-+
T Consensus 28 ~~esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~ 69 (262)
T COG1635 28 YLESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGI 69 (262)
T ss_pred hhhccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcc
Confidence 456799999999999999999999999999999999988854
No 59
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=99.44 E-value=3.4e-13 Score=125.83 Aligned_cols=64 Identities=13% Similarity=0.175 Sum_probs=50.6
Q ss_pred CCcccchHHHHHHHhcCcEEEecceeeEEEEcCCCCEEEEE---ecCC--cEEEcCEEEEccCHHhhhcC
Q 019346 270 PPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFL---LTNG--NVIDGDAYLISSSFSYLKTG 334 (342)
Q Consensus 270 ~~~~l~~~l~~~l~~~Gv~i~~~t~V~~I~~~~~g~~~~v~---t~~G--~~i~a~~VI~At~~~~~~~L 334 (342)
+|.+++..|.+.++++|++|+++++|++|+.++++.+ .|+ +..| .+++|++||+|+++|+..++
T Consensus 176 dp~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v-~v~~~~~~~g~~~~i~A~~VV~AAG~~s~~La 244 (483)
T TIGR01320 176 DFGALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGSW-TVTVKNTRTGGKRTLNTRFVFVGAGGGALPLL 244 (483)
T ss_pred CHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCeE-EEEEeeccCCceEEEECCEEEECCCcchHHHH
Confidence 4789999999999999999999999999987544432 243 2334 26999999999999986544
No 60
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=99.44 E-value=4e-13 Score=125.46 Aligned_cols=64 Identities=23% Similarity=0.264 Sum_probs=50.8
Q ss_pred CCcccchHHHHHHHhcC-cEEEecceeeEEEEcCCCCEEEEEe---cCCc--EEEcCEEEEccCHHhhhcC
Q 019346 270 PPERLCLPIVEHIQSLG-GEVRLNSRVQKIELNDDGTVKNFLL---TNGN--VIDGDAYLISSSFSYLKTG 334 (342)
Q Consensus 270 ~~~~l~~~l~~~l~~~G-v~i~~~t~V~~I~~~~~g~~~~v~t---~~G~--~i~a~~VI~At~~~~~~~L 334 (342)
+|..+++.|.+.++++| ++|+++++|++|+.++++.+ .|++ .+|+ +++|++||+|+++|+..++
T Consensus 181 d~~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~~-~v~~~~~~~G~~~~i~A~~VVvaAGg~s~~L~ 250 (494)
T PRK05257 181 NFGALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGSW-TVTVKDLKTGEKRTVRAKFVFIGAGGGALPLL 250 (494)
T ss_pred CHHHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCCCE-EEEEEEcCCCceEEEEcCEEEECCCcchHHHH
Confidence 46789999999999887 89999999999998556533 3443 3453 6999999999999986554
No 61
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=99.43 E-value=6.2e-12 Score=118.63 Aligned_cols=58 Identities=19% Similarity=0.186 Sum_probs=46.3
Q ss_pred ccchHHHHHHHhcCcEEEecceeeEEEEcCCCCEEEEEe--cCC--cEEEcCEEEEccCHHhh
Q 019346 273 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLL--TNG--NVIDGDAYLISSSFSYL 331 (342)
Q Consensus 273 ~l~~~l~~~l~~~Gv~i~~~t~V~~I~~~~~g~~~~v~t--~~G--~~i~a~~VI~At~~~~~ 331 (342)
.++..|.+.+++.|++|+++++|++|.. +++.+.+|.. .+| .++.|+.||+||+.+..
T Consensus 191 ~l~~~L~~~~~~~gv~i~~~t~v~~l~~-~~g~V~Gv~~~~~~g~~~~i~a~~VVlAtGG~~~ 252 (506)
T PRK06481 191 YLVDGLLKNVQERKIPLFVNADVTKITE-KDGKVTGVKVKINGKETKTISSKAVVVTTGGFGA 252 (506)
T ss_pred HHHHHHHHHHHHcCCeEEeCCeeEEEEe-cCCEEEEEEEEeCCCeEEEEecCeEEEeCCCccc
Confidence 5788889999999999999999999986 4566656654 343 36999999999987753
No 62
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=99.43 E-value=9.1e-13 Score=124.24 Aligned_cols=62 Identities=15% Similarity=0.125 Sum_probs=49.5
Q ss_pred CCcccchHHHHHHHhcCcEEEecceeeEEEEcCCCCEEEEEecC---Cc--EEEcCEEEEccCHHhhhc
Q 019346 270 PPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTN---GN--VIDGDAYLISSSFSYLKT 333 (342)
Q Consensus 270 ~~~~l~~~l~~~l~~~Gv~i~~~t~V~~I~~~~~g~~~~v~t~~---G~--~i~a~~VI~At~~~~~~~ 333 (342)
+|.+++..+.+.+.++|++++++++|++|..++++ +.|++.+ |+ +++|+.||+|+++|+-..
T Consensus 153 d~~rl~~~l~~~A~~~Ga~i~~~~~V~~i~~~~~~--~~v~~~~~~~g~~~~i~a~~VVnAaG~wa~~l 219 (508)
T PRK12266 153 DDARLVVLNARDAAERGAEILTRTRVVSARRENGL--WHVTLEDTATGKRYTVRARALVNAAGPWVKQF 219 (508)
T ss_pred CHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEeCCE--EEEEEEEcCCCCEEEEEcCEEEECCCccHHHH
Confidence 47789899999999999999999999999874332 3465543 42 799999999999997544
No 63
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.43 E-value=9.1e-13 Score=124.31 Aligned_cols=62 Identities=8% Similarity=-0.008 Sum_probs=50.0
Q ss_pred CCcccchHHHHHHHhcCcEEEecceeeEEEEcCCCCEEEEEecCC----cEEEcCEEEEccCHHhhhc
Q 019346 270 PPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNG----NVIDGDAYLISSSFSYLKT 333 (342)
Q Consensus 270 ~~~~l~~~l~~~l~~~Gv~i~~~t~V~~I~~~~~g~~~~v~t~~G----~~i~a~~VI~At~~~~~~~ 333 (342)
+|.+++..+...+.++|++++++++|++|..+++. +.|++.++ .+++|+.||+|+++|+-..
T Consensus 153 d~~rl~~~l~~~a~~~Ga~i~~~~~V~~i~~~~~~--~~v~~~~~~g~~~~i~a~~VVnAaG~wa~~l 218 (502)
T PRK13369 153 DDARLVVLNALDAAERGATILTRTRCVSARREGGL--WRVETRDADGETRTVRARALVNAAGPWVTDV 218 (502)
T ss_pred cHHHHHHHHHHHHHHCCCEEecCcEEEEEEEcCCE--EEEEEEeCCCCEEEEEecEEEECCCccHHHH
Confidence 36789999999999999999999999999874332 35666554 2699999999999997543
No 64
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=99.42 E-value=3.6e-12 Score=108.83 Aligned_cols=42 Identities=40% Similarity=0.553 Sum_probs=38.4
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCcce
Q 019346 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKI 96 (342)
Q Consensus 55 ~~~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~~gG~~ 96 (342)
..++||+|||||++|++||+.|++.|++|+|+|++..+||.+
T Consensus 19 ~~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~ 60 (254)
T TIGR00292 19 YAESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGS 60 (254)
T ss_pred hcCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccc
Confidence 357899999999999999999999999999999999888653
No 65
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=99.42 E-value=2.7e-12 Score=119.45 Aligned_cols=60 Identities=18% Similarity=0.267 Sum_probs=48.4
Q ss_pred cccchHHHHHHHhcCcEEEecceeeEEEEcCCCCEEEEEe--cCCc--EEEcCEEEEccCHHhh
Q 019346 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLL--TNGN--VIDGDAYLISSSFSYL 331 (342)
Q Consensus 272 ~~l~~~l~~~l~~~Gv~i~~~t~V~~I~~~~~g~~~~v~t--~~G~--~i~a~~VI~At~~~~~ 331 (342)
..++..|.+.+++.|++|+++++|++|..++++.+++|.. .+|+ .+.++.||+||+.+..
T Consensus 130 ~~l~~~l~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg~~~ 193 (439)
T TIGR01813 130 AEIVQKLYKKAKKEGIDTRLNSKVEDLIQDDQGTVVGVVVKGKGKGIYIKAAKAVVLATGGFGS 193 (439)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEeeEeEECCCCcEEEEEEEeCCCeEEEEecceEEEecCCCCC
Confidence 4688889999999999999999999999865666666654 3443 4789999999998764
No 66
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.41 E-value=1e-12 Score=120.75 Aligned_cols=70 Identities=17% Similarity=0.163 Sum_probs=56.7
Q ss_pred eeecCCC-CCcccchHHHHHHHhcCcEEEecceeeEEEEcCCCCEEEEEecCCc-----EEEcCEEEEccCHHhhhcC
Q 019346 263 MAFLDGN-PPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGN-----VIDGDAYLISSSFSYLKTG 334 (342)
Q Consensus 263 ~~~~~g~-~~~~l~~~l~~~l~~~Gv~i~~~t~V~~I~~~~~g~~~~v~t~~G~-----~i~a~~VI~At~~~~~~~L 334 (342)
+.|+++- .+.+|+-.++..+.++|.++.+.++|+++.++ ++ +++|+..+.+ +|+|+.||.||++|+-..+
T Consensus 154 ~~y~D~~vddaRLv~~~a~~A~~~Ga~il~~~~v~~~~re-~~-v~gV~~~D~~tg~~~~ira~~VVNAaGpW~d~i~ 229 (532)
T COG0578 154 FRYPDGVVDDARLVAANARDAAEHGAEILTYTRVESLRRE-GG-VWGVEVEDRETGETYEIRARAVVNAAGPWVDEIL 229 (532)
T ss_pred EEEccceechHHHHHHHHHHHHhcccchhhcceeeeeeec-CC-EEEEEEEecCCCcEEEEEcCEEEECCCccHHHHH
Confidence 3444432 47799999999999999999999999999984 55 7788876542 6999999999999986655
No 67
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=99.40 E-value=1.2e-12 Score=121.51 Aligned_cols=65 Identities=18% Similarity=0.141 Sum_probs=49.2
Q ss_pred CCcccchHHHHHHHh-cCcEEEecceeeEEEEc-CCCCEEEEE-ecCCc--EEEcCEEEEccCHHhhhcC
Q 019346 270 PPERLCLPIVEHIQS-LGGEVRLNSRVQKIELN-DDGTVKNFL-LTNGN--VIDGDAYLISSSFSYLKTG 334 (342)
Q Consensus 270 ~~~~l~~~l~~~l~~-~Gv~i~~~t~V~~I~~~-~~g~~~~v~-t~~G~--~i~a~~VI~At~~~~~~~L 334 (342)
.+..+++.|.+.+.+ .|++|+++++|++|... ++++.+.++ +.+|+ +++||+||+|+++|+..++
T Consensus 182 D~~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~w~v~v~~t~~g~~~~i~Ad~VV~AAGawS~~La 251 (497)
T PRK13339 182 NFGALTRKLAKHLESHPNAQVKYNHEVVDLERLSDGGWEVTVKDRNTGEKREQVADYVFIGAGGGAIPLL 251 (497)
T ss_pred CHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCCCEEEEEEecCCCceEEEEcCEEEECCCcchHHHH
Confidence 466889999999965 48999999999999876 334432222 44553 6999999999999986554
No 68
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=99.39 E-value=8.9e-12 Score=116.90 Aligned_cols=58 Identities=22% Similarity=0.300 Sum_probs=47.0
Q ss_pred cccchHHHHHHHhcCcEEEecceeeEEEEcCCCCEEEEEec--CC--cEEEcCEEEEccCHHh
Q 019346 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT--NG--NVIDGDAYLISSSFSY 330 (342)
Q Consensus 272 ~~l~~~l~~~l~~~Gv~i~~~t~V~~I~~~~~g~~~~v~t~--~G--~~i~a~~VI~At~~~~ 330 (342)
..++..|.+.+++.|++|+++++|++|..+ ++.+++|++. +| ..++|+.||+||+.+.
T Consensus 131 ~~l~~~l~~~~~~~gv~i~~~t~v~~l~~~-~g~v~gv~~~~~~g~~~~i~a~~VIlAtGg~~ 192 (466)
T PRK08274 131 KALVNALYRSAERLGVEIRYDAPVTALELD-DGRFVGARAGSAAGGAERIRAKAVVLAAGGFE 192 (466)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEEec-CCeEEEEEEEccCCceEEEECCEEEECCCCCC
Confidence 467888889999999999999999999874 5667677663 33 3689999999998764
No 69
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=99.38 E-value=6.7e-11 Score=107.46 Aligned_cols=255 Identities=18% Similarity=0.238 Sum_probs=140.5
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCcceeeecc--------------------CCCceeecceeEe
Q 019346 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKD--------------------GDGDWYETGLHIF 114 (342)
Q Consensus 55 ~~~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~~gG~~~~~~~--------------------~~~~~~~~G~~~~ 114 (342)
+.++||||+|.|+.-...|..|++.|.+|+.+|+++..||..++... ...+.+|.-+..+
T Consensus 2 ~~~yDviI~GTGl~esila~als~~GkkVLhiD~n~yYGg~~asl~l~~l~~~~~~~~~~~~~~~~~sR~ynIDL~PKll 81 (438)
T PF00996_consen 2 DEEYDVIILGTGLTESILAAALSRSGKKVLHIDRNDYYGGEWASLNLDQLYEWFRPKQWTPPESLGRSRDYNIDLIPKLL 81 (438)
T ss_dssp -SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSCGGG-EE-HHHHHHHHCCTCCHHHHHHHTGGGC-EESS--BE
T ss_pred CccceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcCCchhcccHHHHHHHhhccccccccccccccceeEecchHhh
Confidence 46899999999999999999999999999999999999998877541 1134455555555
Q ss_pred cCCcccHHHHHHHcCCCccccccccceeeeccCCCCCccccCCCCCCCCchhhHHHHHhcCCCCChhHHHHhhhccchhh
Q 019346 115 FGAYPNIQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAI 194 (342)
Q Consensus 115 ~~~~~~~~~l~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (342)
... ..+-+++-.-++...+++......+... .+.+.. .|... .+.+. .+.+...++.+. ++++...
T Consensus 82 ~a~-g~LV~lLi~S~V~rYLEFk~V~~~~v~~--~~~l~k------VP~sr---~dvf~-s~~lsl~eKR~l-mkFl~~v 147 (438)
T PF00996_consen 82 YAR-GPLVKLLISSGVTRYLEFKAVDGSYVYK--NGKLHK------VPCSR---EDVFK-SKLLSLFEKRRL-MKFLKFV 147 (438)
T ss_dssp ETT-SHHHHHHHHCTGGGGSEEEEESEEEEEE--TTEEEE--------SSH---HHHHC--TTS-HHHHHHH-HHHHHHH
T ss_pred hcc-CHHHHHHHhCCcccceEEEEcceeEEEe--CCEEee------CCCCH---HHhhc-CCCccHHHHHHH-HHHHHHH
Confidence 433 3355666677777766665554444322 111111 11111 11121 122333332222 2222222
Q ss_pred hcCc---h-hh--hhccCCCHHHHHHHcCCChhHHHHHHHHHHhhccCCCCC---cchHHHHHHHHHHhhhh--cc-Ccc
Q 019346 195 IGGQ---A-YV--EAQDGLTVQEWMRKQGVPDRVTTEVFIAMSKALNFINPD---ELSMQCILIALNRFLQE--KH-GSK 262 (342)
Q Consensus 195 ~~~~---~-~~--~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~--~~-g~~ 262 (342)
.... + .. .+....++.+++++.+++....+.... ++.....+ +.+....+..+..++.. .+ ...
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~e~~~~f~L~~~~~~~i~h----aiaL~~~~~~~~~p~~~~l~ri~~yl~SlgryG~sP 223 (438)
T PF00996_consen 148 ANYEEDDPSTHKGLDPEKKTFQELLKKFGLSENLIDFIGH----AIALSLDDSYLTEPAREGLERIKLYLSSLGRYGKSP 223 (438)
T ss_dssp HHGCTTBGGGSTTG-TTTSBHHHHHHHTTS-HHHHHHHHH----HTS-SSSSGGGGSBSHHHHHHHHHHHHHHCCCSSSS
T ss_pred hhcccCCcchhhccccccccHHHHHHhcCCCHHHHHHHHH----hhhhccCcccccccHHHHHHHHHHHHHHHhccCCCC
Confidence 1111 1 00 123457899999999887655443322 22222211 11233445555554331 22 234
Q ss_pred eeecCCCCCcccchHHHHHHHhcCcEEEecceeeEEEEcCCCCEEEEEecCCcEEEcCEEEEccCHHh
Q 019346 263 MAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYLISSSFSY 330 (342)
Q Consensus 263 ~~~~~g~~~~~l~~~l~~~l~~~Gv~i~~~t~V~~I~~~~~g~~~~v~t~~G~~i~a~~VI~At~~~~ 330 (342)
+.|+..| ...|.+++.+.+.-.|+.+.+|++|.+|..++++.+.+|.+ +|++++|++||. .|.+.
T Consensus 224 fLyP~YG-~GELpQ~FcRl~AV~GG~Y~L~~~i~~i~~~~~g~~~gV~s-~ge~v~~k~vI~-dpsy~ 288 (438)
T PF00996_consen 224 FLYPLYG-LGELPQAFCRLSAVYGGTYMLNRPIDEIVVDEDGKVIGVKS-EGEVVKAKKVIG-DPSYL 288 (438)
T ss_dssp EEEETT--TTHHHHHHHHHHHHTT-EEESS--EEEEEEETTTEEEEEEE-TTEEEEESEEEE-EGGGB
T ss_pred EEEEccC-CccHHHHHHHHhhhcCcEEEeCCccceeeeecCCeEEEEec-CCEEEEcCEEEE-CCccC
Confidence 5555555 56999999999999999999999999999877788877765 888999999994 44443
No 70
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.36 E-value=2.1e-11 Score=115.91 Aligned_cols=59 Identities=10% Similarity=0.177 Sum_probs=46.9
Q ss_pred cccchHHHHHHHhcCcEEEecceeeEEEEcCCCCEEEEEec-CCc--EEEc-CEEEEccCHHhh
Q 019346 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT-NGN--VIDG-DAYLISSSFSYL 331 (342)
Q Consensus 272 ~~l~~~l~~~l~~~Gv~i~~~t~V~~I~~~~~g~~~~v~t~-~G~--~i~a-~~VI~At~~~~~ 331 (342)
..|+..|.+.+++.|++|+++++|+++.. +++.+++|... +|+ .+.| +.||+||+.+..
T Consensus 217 ~~l~~~L~~~~~~~Gv~i~~~t~v~~Li~-~~g~V~GV~~~~~g~~~~i~a~kaVILAtGGf~~ 279 (564)
T PRK12845 217 QALAAGLFAGVLRAGIPIWTETSLVRLTD-DGGRVTGAVVDHRGREVTVTARRGVVLAAGGFDH 279 (564)
T ss_pred HHHHHHHHHHHHHCCCEEEecCEeeEEEe-cCCEEEEEEEEECCcEEEEEcCCEEEEecCCccc
Confidence 47888999999999999999999999986 46778787543 443 4667 579999988864
No 71
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=99.36 E-value=1.1e-11 Score=104.85 Aligned_cols=220 Identities=21% Similarity=0.266 Sum_probs=123.1
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCcceeeeccC-CC-ceeecceeEecCCcccHHHHHHHcCCCccc
Q 019346 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDG-DG-DWYETGLHIFFGAYPNIQNLFGELGINDRL 134 (342)
Q Consensus 57 ~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~~gG~~~~~~~~-~~-~~~~~G~~~~~~~~~~~~~l~~~~gi~~~~ 134 (342)
.+|++|||||++|+..|..|++.|++|+|+|+++.+||++.+.... .| .+.-.|+|++......+++++..+---..
T Consensus 1 ~fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGNaYde~d~~tGIlvHkYGpHIFHT~~~~Vwdyv~~F~e~~~- 79 (374)
T COG0562 1 MFDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNAYDEADDQTGILVHKYGPHIFHTDNKRVWDYVNQFTEFNP- 79 (374)
T ss_pred CCcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCccccccCCCCCeEEeeccCceeecCchHHHHHHhhhhhhhh-
Confidence 3699999999999999999999999999999999999999886654 34 34567999999888888888877632111
Q ss_pred cccccceeeeccCCCCCccccCCCCCCCCchhhHHHHHhcCCCCChhHHHHhhhccchhhhcCchhhhhccCCCHHHHHH
Q 019346 135 QWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEWMR 214 (342)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 214 (342)
.......... +.. + .+|..++.+.+++..... .+.++.+...... .....+..++++-.-
T Consensus 80 --Y~hrVla~~n---g~~--~----~lP~nl~ti~ql~G~~~~---p~~a~~~i~~~~~------~~~~~~~q~~ee~ai 139 (374)
T COG0562 80 --YQHRVLALVN---GQL--Y----PLPFNLNTINQLFGKNFT---PDEARKFIEEQAA------EIDIAEPQNLEEQAI 139 (374)
T ss_pred --hccceeEEEC---Cee--e----eccccHHHHHHHhCccCC---HHHHHHHHHHhhc------cccccchhhhhhHHH
Confidence 0111100000 000 0 123334445554432211 1122221111110 001112233333332
Q ss_pred HcCCChhHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHhhhhccCcceeecCCCCCcccchHHHHHHHhc-CcEEEecc
Q 019346 215 KQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCLPIVEHIQSL-GGEVRLNS 293 (342)
Q Consensus 215 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~l~~~l~~~l~~~-Gv~i~~~t 293 (342)
+. +...+.++++..+....|+.+++++++......-.++.... ....-...|- |..=-+.+.+.+.++ .+++++||
T Consensus 140 s~-vg~~LY~~f~kgYT~KQWG~~p~eLpasvi~RvPVr~~~dn-~YF~d~yQGl-P~~GYT~~~~kMl~hp~I~V~Lnt 216 (374)
T COG0562 140 SL-VGRDLYEAFFKGYTEKQWGLDPKELPASVIKRLPVRLNFDN-RYFSDTYQGL-PKDGYTAMFEKMLDHPNIDVRLNT 216 (374)
T ss_pred HH-HHHHHHHHHhccccHHHhCCChHHCCHHHhcccceEEcccC-cccCcccccC-ccccHHHHHHHHhcCCCceEEecC
Confidence 22 45677778888888888999999998865432211111000 0000011111 322234455555554 78999999
Q ss_pred eeeEEEE
Q 019346 294 RVQKIEL 300 (342)
Q Consensus 294 ~V~~I~~ 300 (342)
.-..+..
T Consensus 217 d~~~~~~ 223 (374)
T COG0562 217 DFFDVKD 223 (374)
T ss_pred cHHHHhh
Confidence 8777653
No 72
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=99.34 E-value=1.1e-11 Score=113.86 Aligned_cols=56 Identities=14% Similarity=0.224 Sum_probs=46.8
Q ss_pred ccchHHHHHHHhcCcEEEecceeeEEEEcCCCCEEEEEecCCcEEEcCEEEEccCHHh
Q 019346 273 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYLISSSFSY 330 (342)
Q Consensus 273 ~l~~~l~~~l~~~Gv~i~~~t~V~~I~~~~~g~~~~v~t~~G~~i~a~~VI~At~~~~ 330 (342)
.+.+.|.+.+.+.|++++++++|++|+.++++. .|++.+|+++.||.||.|.+.++
T Consensus 114 ~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~v--~v~~~~g~~~~a~~vV~AdG~~S 169 (392)
T PRK08773 114 LLVDRLWAALHAAGVQLHCPARVVALEQDADRV--RLRLDDGRRLEAALAIAADGAAS 169 (392)
T ss_pred HHHHHHHHHHHhCCCEEEcCCeEEEEEecCCeE--EEEECCCCEEEeCEEEEecCCCc
Confidence 566778888888899999999999998754443 47778888899999999998876
No 73
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=99.32 E-value=2.1e-11 Score=112.83 Aligned_cols=56 Identities=18% Similarity=0.353 Sum_probs=43.4
Q ss_pred ccchHHHHHHHhcCcEEEecceeeEEEEcCCCCEEEEEecCCcEEEcCEEEEccCHHh
Q 019346 273 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYLISSSFSY 330 (342)
Q Consensus 273 ~l~~~l~~~l~~~Gv~i~~~t~V~~I~~~~~g~~~~v~t~~G~~i~a~~VI~At~~~~ 330 (342)
.|-+.|.+.+++.|++|+++++|++|..+ ++.+..++ .+|++++|+.||.|++.++
T Consensus 109 ~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~-~g~v~~v~-~~g~~i~A~~VI~A~G~~s 164 (428)
T PRK10157 109 KFDAWLMEQAEEAGAQLITGIRVDNLVQR-DGKVVGVE-ADGDVIEAKTVILADGVNS 164 (428)
T ss_pred HHHHHHHHHHHHCCCEEECCCEEEEEEEe-CCEEEEEE-cCCcEEECCEEEEEeCCCH
Confidence 44556778888889999999999999874 44444454 4555899999999998764
No 74
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=99.32 E-value=8.3e-12 Score=100.68 Aligned_cols=41 Identities=44% Similarity=0.601 Sum_probs=34.3
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCcce
Q 019346 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKI 96 (342)
Q Consensus 56 ~~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~~gG~~ 96 (342)
.++||+|||||++||+||++|++.|++|+|+|++..+||.+
T Consensus 16 ~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~ 56 (230)
T PF01946_consen 16 LEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGM 56 (230)
T ss_dssp TEESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTT
T ss_pred ccCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccc
Confidence 56899999999999999999999999999999999888754
No 75
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=99.31 E-value=3.2e-11 Score=111.62 Aligned_cols=59 Identities=20% Similarity=0.317 Sum_probs=46.5
Q ss_pred cccchHHHHHHHhcCcEEEecceeeEEEEcCCCCEEEEEec---CCc--EEEcCEEEEccCHHhh
Q 019346 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT---NGN--VIDGDAYLISSSFSYL 331 (342)
Q Consensus 272 ~~l~~~l~~~l~~~Gv~i~~~t~V~~I~~~~~g~~~~v~t~---~G~--~i~a~~VI~At~~~~~ 331 (342)
..++..|.+.++++|++|+++++|+++..+ ++.+++|... +|+ +|+|+.||+||+.+..
T Consensus 141 ~~~~~~l~~~~~~~gv~i~~~~~~~~Li~e-~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~ 204 (417)
T PF00890_consen 141 KALIEALAKAAEEAGVDIRFNTRVTDLITE-DGRVTGVVAENPADGEFVRIKAKAVILATGGFGG 204 (417)
T ss_dssp HHHHHHHHHHHHHTTEEEEESEEEEEEEEE-TTEEEEEEEEETTTCEEEEEEESEEEE----BGG
T ss_pred HHHHHHHHHHHhhcCeeeeccceeeeEEEe-CCceeEEEEEECCCCeEEEEeeeEEEeccCcccc
Confidence 367888999999999999999999999984 6678888776 454 6889999999998875
No 76
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.31 E-value=1.4e-11 Score=113.63 Aligned_cols=57 Identities=11% Similarity=0.143 Sum_probs=46.6
Q ss_pred ccchHHHHHHHhcCcEEEecceeeEEEEcCCCCEEEEEecCCcEEEcCEEEEccCHHhh
Q 019346 273 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYLISSSFSYL 331 (342)
Q Consensus 273 ~l~~~l~~~l~~~Gv~i~~~t~V~~I~~~~~g~~~~v~t~~G~~i~a~~VI~At~~~~~ 331 (342)
.+.+.|.+.+.+.|++++.+++|++|+.++++. .|++.+|++++||.||.|.+.++.
T Consensus 113 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v--~v~~~~g~~~~a~~vVgAdG~~S~ 169 (405)
T PRK05714 113 VVQDALLERLHDSDIGLLANARLEQMRRSGDDW--LLTLADGRQLRAPLVVAADGANSA 169 (405)
T ss_pred HHHHHHHHHHhcCCCEEEcCCEEEEEEEcCCeE--EEEECCCCEEEeCEEEEecCCCch
Confidence 455667777777899999999999998755553 477788888999999999998863
No 77
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=99.31 E-value=1.7e-10 Score=110.64 Aligned_cols=60 Identities=13% Similarity=0.185 Sum_probs=48.2
Q ss_pred CcccchHHHHHHHhcCcEEEecceeeEEEEcCCCCEEEEEe--cCCc-EEEc-CEEEEccCHHhh
Q 019346 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLL--TNGN-VIDG-DAYLISSSFSYL 331 (342)
Q Consensus 271 ~~~l~~~l~~~l~~~Gv~i~~~t~V~~I~~~~~g~~~~v~t--~~G~-~i~a-~~VI~At~~~~~ 331 (342)
+..|+..|.+.+++.|++|+++++|++|..+ ++.+.+|.. .++. +++| +.||+||+.+..
T Consensus 216 g~~l~~~L~~~a~~~Gv~i~~~t~v~~l~~~-~g~v~GV~~~~~~~~~~i~a~k~VVlAtGg~~~ 279 (581)
T PRK06134 216 GNALVARLLKSAEDLGVRIWESAPARELLRE-DGRVAGAVVETPGGLQEIRARKGVVLAAGGFPH 279 (581)
T ss_pred HHHHHHHHHHHHHhCCCEEEcCCEEEEEEEe-CCEEEEEEEEECCcEEEEEeCCEEEEcCCCccc
Confidence 4578899999999999999999999999874 566666654 3442 5889 999999999863
No 78
>PRK12839 hypothetical protein; Provisional
Probab=99.30 E-value=1.1e-10 Score=111.43 Aligned_cols=61 Identities=11% Similarity=0.243 Sum_probs=48.1
Q ss_pred CcccchHHHHHHHhcCcEEEecceeeEEEEcCCCCEEEEEe--cCCc-EEE-cCEEEEccCHHhh
Q 019346 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLL--TNGN-VID-GDAYLISSSFSYL 331 (342)
Q Consensus 271 ~~~l~~~l~~~l~~~Gv~i~~~t~V~~I~~~~~g~~~~v~t--~~G~-~i~-a~~VI~At~~~~~ 331 (342)
+..|+..|.+.+.+.|++|+++++|++|..++++.+.+|.. .+|+ ++. ++.||+||+.+..
T Consensus 213 g~~l~~~L~~~a~~~Gv~i~~~t~v~~Li~~~~g~V~GV~~~~~~g~~~i~aak~VVLAtGGf~~ 277 (572)
T PRK12839 213 GTALTGRLLRSADDLGVDLRVSTSATSLTTDKNGRVTGVRVQGPDGAVTVEATRGVVLATGGFPN 277 (572)
T ss_pred HHHHHHHHHHHHHHCCCEEEcCCEEEEEEECCCCcEEEEEEEeCCCcEEEEeCCEEEEcCCCccc
Confidence 45788889999999999999999999998755677778754 3453 344 4899999988864
No 79
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=99.30 E-value=3.3e-12 Score=117.27 Aligned_cols=59 Identities=19% Similarity=0.274 Sum_probs=53.3
Q ss_pred CCcccchHHHHHHHhcCcEEEecceeeEEEEcCCCCEEEEEecCCcEEEcCEEEEccCHHh
Q 019346 270 PPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYLISSSFSY 330 (342)
Q Consensus 270 ~~~~l~~~l~~~l~~~Gv~i~~~t~V~~I~~~~~g~~~~v~t~~G~~i~a~~VI~At~~~~ 330 (342)
.|..+++.|+..+.+.|+.|..|++|++|....++. .+|.|+.| .|+|.+||.|++.|+
T Consensus 185 DP~~lC~ala~~A~~~GA~viE~cpV~~i~~~~~~~-~gVeT~~G-~iet~~~VNaaGvWA 243 (856)
T KOG2844|consen 185 DPAGLCQALARAASALGALVIENCPVTGLHVETDKF-GGVETPHG-SIETECVVNAAGVWA 243 (856)
T ss_pred CHHHHHHHHHHHHHhcCcEEEecCCcceEEeecCCc-cceeccCc-ceecceEEechhHHH
Confidence 488999999999999999999999999998754544 48999999 899999999999996
No 80
>PRK06175 L-aspartate oxidase; Provisional
Probab=99.30 E-value=4.7e-11 Score=110.45 Aligned_cols=58 Identities=12% Similarity=0.091 Sum_probs=44.5
Q ss_pred cccchHHHHHHHhc-CcEEEecceeeEEEEcCCCCEEEEE-ecCCc--EEEcCEEEEccCHHh
Q 019346 272 ERLCLPIVEHIQSL-GGEVRLNSRVQKIELNDDGTVKNFL-LTNGN--VIDGDAYLISSSFSY 330 (342)
Q Consensus 272 ~~l~~~l~~~l~~~-Gv~i~~~t~V~~I~~~~~g~~~~v~-t~~G~--~i~a~~VI~At~~~~ 330 (342)
..++..|.+.+.++ |++|+++++|++|..+ ++.+.+|. +.+|+ ++.|+.||+||+.+.
T Consensus 128 ~~l~~~L~~~~~~~~gV~i~~~t~v~~Li~~-~~~v~Gv~~~~~g~~~~i~Ak~VILAtGG~~ 189 (433)
T PRK06175 128 KKVEKILLKKVKKRKNITIIENCYLVDIIEN-DNTCIGAICLKDNKQINIYSKVTILATGGIG 189 (433)
T ss_pred HHHHHHHHHHHHhcCCCEEEECcEeeeeEec-CCEEEEEEEEECCcEEEEEcCeEEEccCccc
Confidence 35778888888754 9999999999999864 55566654 33553 589999999999864
No 81
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.29 E-value=1.3e-10 Score=111.20 Aligned_cols=60 Identities=15% Similarity=0.206 Sum_probs=47.8
Q ss_pred cccchHHHHHHHhcCcEEEecceeeEEEEcCCCCEEEEEecC-Cc--EEEcCE-EEEccCHHhh
Q 019346 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTN-GN--VIDGDA-YLISSSFSYL 331 (342)
Q Consensus 272 ~~l~~~l~~~l~~~Gv~i~~~t~V~~I~~~~~g~~~~v~t~~-G~--~i~a~~-VI~At~~~~~ 331 (342)
..++..|.+.+++.|++|+++++|+++..+++|.+++|...+ |+ +++|++ ||+||+.+..
T Consensus 213 ~~~~~~l~~~~~~~gv~i~~~~~~~~Li~d~~g~V~Gv~~~~~~~~~~i~a~~aVilAtGGf~~ 276 (584)
T PRK12835 213 QSLVARLRLALKDAGVPLWLDSPMTELITDPDGAVVGAVVEREGRTLRIGARRGVILATGGFDH 276 (584)
T ss_pred HHHHHHHHHHHHhCCceEEeCCEEEEEEECCCCcEEEEEEEeCCcEEEEEeceeEEEecCcccC
Confidence 356777888888889999999999999986677887876543 32 588975 9999988863
No 82
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=99.28 E-value=3.5e-11 Score=110.30 Aligned_cols=56 Identities=18% Similarity=0.267 Sum_probs=44.9
Q ss_pred cccchHHHHHHHhcCcEEEecceeeEEEEcCCCCEEEEEecCCcEEEcCEEEEccCHHh
Q 019346 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYLISSSFSY 330 (342)
Q Consensus 272 ~~l~~~l~~~l~~~Gv~i~~~t~V~~I~~~~~g~~~~v~t~~G~~i~a~~VI~At~~~~ 330 (342)
..+.+.+.+.+++.|++++++++|++|..+++ .+.|++. ++++.||.||+|++.++
T Consensus 105 ~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~~--~~~v~~~-~~~i~ad~VIlAtG~~s 160 (400)
T TIGR00275 105 ADVLDALLNELKELGVEILTNSKVKSIKKDDN--GFGVETS-GGEYEADKVILATGGLS 160 (400)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCEEEEEEecCC--eEEEEEC-CcEEEcCEEEECCCCcc
Confidence 46778888889889999999999999976433 3356664 45899999999999754
No 83
>PRK07804 L-aspartate oxidase; Provisional
Probab=99.28 E-value=1.2e-10 Score=110.70 Aligned_cols=59 Identities=10% Similarity=0.137 Sum_probs=47.2
Q ss_pred cccchHHHHHHHhcCcEEEecceeeEEEEcCCCCEEEEEec-------CC-cEEEcCEEEEccCHHh
Q 019346 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT-------NG-NVIDGDAYLISSSFSY 330 (342)
Q Consensus 272 ~~l~~~l~~~l~~~Gv~i~~~t~V~~I~~~~~g~~~~v~t~-------~G-~~i~a~~VI~At~~~~ 330 (342)
..+...|.+.+++.|+++++++.|+++..++++.+.+|... ++ ..+.|+.||+||+.+.
T Consensus 144 ~~i~~~L~~~~~~~gV~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG~~ 210 (541)
T PRK07804 144 AEVQRALDAAVRADPLDIREHALALDLLTDGTGAVAGVTLHVLGEGSPDGVGAVHAPAVVLATGGLG 210 (541)
T ss_pred HHHHHHHHHHHHhCCCEEEECeEeeeeEEcCCCeEEEEEEEeccCCCCCcEEEEEcCeEEECCCCCC
Confidence 35778888888888999999999999987555667676553 23 3689999999999875
No 84
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=99.28 E-value=3.4e-11 Score=100.10 Aligned_cols=55 Identities=22% Similarity=0.363 Sum_probs=37.5
Q ss_pred HHHHHHHhcCcEEEecceeeEEEEcCCCCEEEEEecCCcEEEcCEEEEccCHHhhhc
Q 019346 277 PIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYLISSSFSYLKT 333 (342)
Q Consensus 277 ~l~~~l~~~Gv~i~~~t~V~~I~~~~~g~~~~v~t~~G~~i~a~~VI~At~~~~~~~ 333 (342)
-+.+.+++.++++++++.|++|..+++++ .|++.+|++++|++||+||+.+....
T Consensus 87 yl~~~~~~~~l~i~~~~~V~~v~~~~~~w--~v~~~~~~~~~a~~VVlAtG~~~~p~ 141 (203)
T PF13738_consen 87 YLQEYAERFGLEIRFNTRVESVRRDGDGW--TVTTRDGRTIRADRVVLATGHYSHPR 141 (203)
T ss_dssp HHHHHHHHTTGGEETS--EEEEEEETTTE--EEEETTS-EEEEEEEEE---SSCSB-
T ss_pred HHHHHHhhcCcccccCCEEEEEEEeccEE--EEEEEecceeeeeeEEEeeeccCCCC
Confidence 34555566688899999999999976664 58899988899999999999654333
No 85
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.27 E-value=9.9e-11 Score=113.05 Aligned_cols=55 Identities=11% Similarity=0.127 Sum_probs=43.4
Q ss_pred hHHHHHHHhcCcEEEecceeeEEEEcCCCCEEEEEec---CCc--EEEcCEEEEccCHHhh
Q 019346 276 LPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT---NGN--VIDGDAYLISSSFSYL 331 (342)
Q Consensus 276 ~~l~~~l~~~Gv~i~~~t~V~~I~~~~~g~~~~v~t~---~G~--~i~a~~VI~At~~~~~ 331 (342)
+.|.+.+++.|++|++++.|+++..+ ++.+++|... +|+ .+.|+.||+||+.+..
T Consensus 174 ~~L~~~~~~~gV~i~~~t~v~~Li~d-~g~V~GV~~~~~~~g~~~~i~AkaVVLATGG~g~ 233 (640)
T PRK07573 174 QALSRQIAAGTVKMYTRTEMLDLVVV-DGRARGIVARNLVTGEIERHTADAVVLATGGYGN 233 (640)
T ss_pred HHHHHHHHhcCCEEEeceEEEEEEEe-CCEEEEEEEEECCCCcEEEEECCEEEECCCCccc
Confidence 45566777789999999999999874 5677777763 453 6899999999998754
No 86
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=99.25 E-value=5.2e-11 Score=109.23 Aligned_cols=57 Identities=16% Similarity=0.225 Sum_probs=46.1
Q ss_pred ccchHHHHHHHhcCcEEEecceeeEEEEcCCCCEEEEEecCCcEEEcCEEEEccCHHh
Q 019346 273 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYLISSSFSY 330 (342)
Q Consensus 273 ~l~~~l~~~l~~~Gv~i~~~t~V~~I~~~~~g~~~~v~t~~G~~i~a~~VI~At~~~~ 330 (342)
+|.+.|++.+++.|++++.++.|+.+..++++.+.++. .++.+++|+.||.|.+...
T Consensus 96 ~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~-~~~~e~~a~~vI~AdG~~s 152 (396)
T COG0644 96 KFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVR-AGDDEVRAKVVIDADGVNS 152 (396)
T ss_pred HhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEE-cCCEEEEcCEEEECCCcch
Confidence 56667889999999999999999999987677654443 3336999999999998764
No 87
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.25 E-value=6.3e-11 Score=113.46 Aligned_cols=60 Identities=12% Similarity=0.048 Sum_probs=48.6
Q ss_pred cccchHHHHHHHhcCcEEEecceeeEEEEcCCCCEEEEEe---cCCc--EEEcCEEEEccCHHhh
Q 019346 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLL---TNGN--VIDGDAYLISSSFSYL 331 (342)
Q Consensus 272 ~~l~~~l~~~l~~~Gv~i~~~t~V~~I~~~~~g~~~~v~t---~~G~--~i~a~~VI~At~~~~~ 331 (342)
..++..|.+.+.+.|++|++++.|+++..+++|.+.+|.. .+|+ .+.|+.||+||+.+..
T Consensus 143 ~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~ 207 (588)
T PRK08958 143 HALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTAICIETGEVVYFKARATVLATGGAGR 207 (588)
T ss_pred HHHHHHHHHHhhhcCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCccc
Confidence 3678888888888899999999999998755677878865 3553 6889999999988753
No 88
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.25 E-value=3.2e-10 Score=108.16 Aligned_cols=59 Identities=19% Similarity=0.235 Sum_probs=47.2
Q ss_pred cccchHHHHHHHhcCcEEEecceeeEEEEcCCCCEEEEEec-CCc--EEEcC-EEEEccCHHhh
Q 019346 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT-NGN--VIDGD-AYLISSSFSYL 331 (342)
Q Consensus 272 ~~l~~~l~~~l~~~Gv~i~~~t~V~~I~~~~~g~~~~v~t~-~G~--~i~a~-~VI~At~~~~~ 331 (342)
..++..|.+.+++.|++|+++++|++|..+ ++.+.+|+.. +|+ .+.|+ .||+||+.+..
T Consensus 208 ~~l~~~l~~~~~~~gv~i~~~~~v~~Li~~-~g~v~Gv~~~~~g~~~~i~A~~aVIlAtGG~~~ 270 (557)
T PRK12844 208 AALIGRMLEAALAAGVPLWTNTPLTELIVE-DGRVVGVVVVRDGREVLIRARRGVLLASGGFGH 270 (557)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEe-CCEEEEEEEEECCeEEEEEecceEEEecCCccC
Confidence 367888889999999999999999999874 6777787663 343 57885 69999988764
No 89
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.25 E-value=7.5e-11 Score=109.11 Aligned_cols=38 Identities=37% Similarity=0.522 Sum_probs=35.1
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCceEEEecCCCC
Q 019346 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVL 92 (342)
Q Consensus 55 ~~~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~~ 92 (342)
+.++||+|||||++|+++|..|++.|++|+|+|+.+..
T Consensus 16 ~~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~ 53 (415)
T PRK07364 16 SLTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAE 53 (415)
T ss_pred ccccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCcc
Confidence 45789999999999999999999999999999998764
No 90
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.25 E-value=9.3e-11 Score=112.00 Aligned_cols=57 Identities=9% Similarity=0.006 Sum_probs=46.8
Q ss_pred ccchHHHHHHHhcCcEEEecceeeEEEEcCCCCEEEEEec---CCc--EEEcCEEEEccCHHh
Q 019346 273 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT---NGN--VIDGDAYLISSSFSY 330 (342)
Q Consensus 273 ~l~~~l~~~l~~~Gv~i~~~t~V~~I~~~~~g~~~~v~t~---~G~--~i~a~~VI~At~~~~ 330 (342)
.++..|.+.+.+.|++|++++.++++..+ +|.+++|... +|+ .++|+.||+||+.+.
T Consensus 137 ~i~~~L~~~~~~~gv~i~~~~~~~~Li~~-~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 198 (566)
T PRK06452 137 ALLHTLFERTSGLNVDFYNEWFSLDLVTD-NKKVVGIVAMQMKTLTPFFFKTKAVVLATGGMG 198 (566)
T ss_pred HHHHHHHHHHHhCCCEEEeCcEEEEEEEE-CCEEEEEEEEECCCCeEEEEEeCeEEECCCccc
Confidence 57778888888889999999999999874 6778888653 332 688999999999875
No 91
>PRK07395 L-aspartate oxidase; Provisional
Probab=99.25 E-value=1e-10 Score=111.06 Aligned_cols=59 Identities=12% Similarity=0.155 Sum_probs=45.8
Q ss_pred cccchHHHHHHHhc-CcEEEecceeeEEEEcC-CCCEEEEEec-CCc--EEEcCEEEEccCHHh
Q 019346 272 ERLCLPIVEHIQSL-GGEVRLNSRVQKIELND-DGTVKNFLLT-NGN--VIDGDAYLISSSFSY 330 (342)
Q Consensus 272 ~~l~~~l~~~l~~~-Gv~i~~~t~V~~I~~~~-~g~~~~v~t~-~G~--~i~a~~VI~At~~~~ 330 (342)
..++..|.+.+.++ |++|++++.|+++..++ ++.+.+|... +|+ .+.|+.||+||+.+.
T Consensus 134 ~~i~~~L~~~~~~~~gi~i~~~~~v~~Li~~~~~g~v~Gv~~~~~g~~~~i~AkaVILATGG~~ 197 (553)
T PRK07395 134 RAIVTTLTEQVLQRPNIEIISQALALSLWLEPETGRCQGISLLYQGQITWLRAGAVILATGGGG 197 (553)
T ss_pred HHHHHHHHHHHhhcCCcEEEECcChhhheecCCCCEEEEEEEEECCeEEEEEcCEEEEcCCCCc
Confidence 35778888888765 89999999999998753 3677777653 453 478999999999864
No 92
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=99.24 E-value=6e-11 Score=114.16 Aligned_cols=59 Identities=7% Similarity=0.105 Sum_probs=47.9
Q ss_pred cccchHHHHHHHhcCcEEEecceeeEEEEcCCCCEEEEEe---cCCc--EEEcCEEEEccCHHh
Q 019346 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLL---TNGN--VIDGDAYLISSSFSY 330 (342)
Q Consensus 272 ~~l~~~l~~~l~~~Gv~i~~~t~V~~I~~~~~g~~~~v~t---~~G~--~i~a~~VI~At~~~~ 330 (342)
..++..|.+.+++.|++|+++++|+++..+++|.+.+|.. .+|+ .+.|+.||+||+.+.
T Consensus 166 ~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 229 (617)
T PTZ00139 166 HAMLHTLYGQSLKYDCNFFIEYFALDLIMDEDGECRGVIAMSMEDGSIHRFRAHYTVIATGGYG 229 (617)
T ss_pred HHHHHHHHHHHHhCCCEEEeceEEEEEEECCCCEEEEEEEEECCCCeEEEEECCcEEEeCCCCc
Confidence 3678888888888999999999999988745677777764 3563 689999999998764
No 93
>COG4716 Myosin-crossreactive antigen [Function unknown]
Probab=99.24 E-value=1.8e-11 Score=105.44 Aligned_cols=232 Identities=17% Similarity=0.232 Sum_probs=131.7
Q ss_pred CCCCCCCeEEEECCCHHHHHHHHHHHHc----CCceEEEecCCCCCcceeeeccCCCceeecceeEecCCcccHHHHHHH
Q 019346 52 PRPSKPLKVVIAGAGLAGLSTAKYLADA----GHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGE 127 (342)
Q Consensus 52 ~~~~~~~dv~IiG~G~~G~~~A~~l~~~----g~~v~vle~~~~~gG~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~ 127 (342)
+....+..+-|||+|++||++|..|.|. |.+|-++|.-+..||.......+...++-.|++.+-..++.++++++.
T Consensus 17 pE~VdqKsaY~vG~GlAsLA~AvfLIRDg~m~G~~IHilEelpl~GGSlDG~~~p~~GfV~RGGRemEnhfEc~WDlfrs 96 (587)
T COG4716 17 PENVDQKSAYIVGGGLASLAAAVFLIRDGQMDGKRIHILEELPLAGGSLDGAGSPHHGFVVRGGREMENHFECLWDLFRS 96 (587)
T ss_pred ccccccceeEEEccchHhhhheeEEEeccccCCceeEeeecCcccCCCCCCCCCcccceeecCcHHHHHHHHHHHHHHhc
Confidence 4445667899999999999999999986 569999999999999988777666666778888887778888888887
Q ss_pred cCCCccccccccceeeeccCCCCCccccCCCCCCCCchhhHHHHHhcCCCCChhHHHHhhhccchhhhcCchhhhhccCC
Q 019346 128 LGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGL 207 (342)
Q Consensus 128 ~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (342)
+.--........+.++.....+...+..++.+..... +...... .+........ ...+.. .-+.++..
T Consensus 97 IPSLei~naSvldEfy~~d~~dPn~s~cRli~k~g~r---v~ddg~~--tl~~~~~~ei----~kL~~t---~EE~L~~~ 164 (587)
T COG4716 97 IPSLEIPNASVLDEFYWLDKDDPNSSNCRLIHKRGRR---VDDDGSF--TLNNKARKEI----IKLLMT---PEEKLDDL 164 (587)
T ss_pred CccccCCCcHHHHHHHhccCCCCCccceeeeeccccc---ccccccc--ccChhhHHHH----HHHHcC---cHHhcCCc
Confidence 6421111111111122221111111111111100000 0000000 0000000000 000000 01234668
Q ss_pred CHHHHHHHcCCChhHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHhhhhccC----cceeecCCCCCcccchHHHHHHH
Q 019346 208 TVQEWMRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHG----SKMAFLDGNPPERLCLPIVEHIQ 283 (342)
Q Consensus 208 ~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g----~~~~~~~g~~~~~l~~~l~~~l~ 283 (342)
++.+|+.+. .+...|+..+...+. +.... ++..+..++.+++..-.| ..+.+-+.++++.|+..|...|+
T Consensus 165 tI~d~Fse~----FF~sNFW~yW~tmFA-FekWh-Sa~EmRRY~mRfihhi~gl~dfs~lkftkyNQYeSlvlPli~yL~ 238 (587)
T COG4716 165 TIEDWFSED----FFKSNFWYYWQTMFA-FEKWH-SAFEMRRYMMRFIHHISGLPDFSALKFTKYNQYESLVLPLITYLK 238 (587)
T ss_pred cHHHhhhHh----hhhhhHHHHHHHHHh-hhHHH-HHHHHHHHHHHHHHHhcCCCcchhhcccccchHHHHHHHHHHHHH
Confidence 888888763 344445544443333 22221 333344444454433222 22344556678899999999999
Q ss_pred hcCcEEEecceeeEEEEc
Q 019346 284 SLGGEVRLNSRVQKIELN 301 (342)
Q Consensus 284 ~~Gv~i~~~t~V~~I~~~ 301 (342)
++||++.+++.|+.|..+
T Consensus 239 ~H~Vdf~~~~~Vedi~v~ 256 (587)
T COG4716 239 SHGVDFTYDQKVEDIDVD 256 (587)
T ss_pred HcCCceEeccEEeeeeec
Confidence 999999999999999874
No 94
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=99.24 E-value=4.8e-11 Score=107.65 Aligned_cols=62 Identities=19% Similarity=0.202 Sum_probs=51.3
Q ss_pred cccchHHHHHHHhcCcEEEecceeeEEEEcCCCCEEEEEecCC--cEEEcCEEEEccCHH-hhhcC
Q 019346 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNG--NVIDGDAYLISSSFS-YLKTG 334 (342)
Q Consensus 272 ~~l~~~l~~~l~~~Gv~i~~~t~V~~I~~~~~g~~~~v~t~~G--~~i~a~~VI~At~~~-~~~~L 334 (342)
.+|.+.|.+.++++|++|+.++.|+++..+ ++.+..|.|.++ .++.||+||+|+++| +..++
T Consensus 263 ~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~-~~~v~~V~t~~g~~~~l~AD~vVLAaGaw~S~gL~ 327 (419)
T TIGR03378 263 IRLEEALKHRFEQLGGVMLPGDRVLRAEFE-GNRVTRIHTRNHRDIPLRADHFVLASGSFFSNGLV 327 (419)
T ss_pred HHHHHHHHHHHHHCCCEEEECcEEEEEEee-CCeEEEEEecCCccceEECCEEEEccCCCcCHHHH
Confidence 478888999999999999999999999874 455666777776 489999999999999 54444
No 95
>PRK06847 hypothetical protein; Provisional
Probab=99.24 E-value=3.6e-11 Score=109.71 Aligned_cols=57 Identities=23% Similarity=0.321 Sum_probs=46.9
Q ss_pred ccchHHHHHHHhcCcEEEecceeeEEEEcCCCCEEEEEecCCcEEEcCEEEEccCHHhh
Q 019346 273 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYLISSSFSYL 331 (342)
Q Consensus 273 ~l~~~l~~~l~~~Gv~i~~~t~V~~I~~~~~g~~~~v~t~~G~~i~a~~VI~At~~~~~ 331 (342)
.+.+.|.+.+.+.|++|+++++|++|+.++++ +.|++.+|+++.||.||.|++.++.
T Consensus 108 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~--~~v~~~~g~~~~ad~vI~AdG~~s~ 164 (375)
T PRK06847 108 ALARILADAARAAGADVRLGTTVTAIEQDDDG--VTVTFSDGTTGRYDLVVGADGLYSK 164 (375)
T ss_pred HHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCE--EEEEEcCCCEEEcCEEEECcCCCcc
Confidence 56677888888889999999999999875444 3577888889999999999998753
No 96
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=99.24 E-value=3.1e-11 Score=113.11 Aligned_cols=56 Identities=27% Similarity=0.383 Sum_probs=45.1
Q ss_pred ccchHHHHHHHhcCcEEEecceeeEEEEcCCCCEEEEEecCCcEEEcCEEEEccCHHh
Q 019346 273 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYLISSSFSY 330 (342)
Q Consensus 273 ~l~~~l~~~l~~~Gv~i~~~t~V~~I~~~~~g~~~~v~t~~G~~i~a~~VI~At~~~~ 330 (342)
.+...+.+.++++|++++++++|++|+.++++. .+++.+|+++.+|.||+|++...
T Consensus 217 ~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~~--~v~~~~g~~i~~D~vi~a~G~~p 272 (461)
T PRK05249 217 EISDALSYHLRDSGVTIRHNEEVEKVEGGDDGV--IVHLKSGKKIKADCLLYANGRTG 272 (461)
T ss_pred HHHHHHHHHHHHcCCEEEECCEEEEEEEeCCeE--EEEECCCCEEEeCEEEEeecCCc
Confidence 566778888889999999999999998644432 46677787899999999997653
No 97
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=99.24 E-value=1.9e-10 Score=108.28 Aligned_cols=59 Identities=10% Similarity=0.090 Sum_probs=46.7
Q ss_pred cccchHHHHHHHh-cCcEEEecceeeEEEEcCCCCEEEEEecC-C--cEEEcCEEEEccCHHhh
Q 019346 272 ERLCLPIVEHIQS-LGGEVRLNSRVQKIELNDDGTVKNFLLTN-G--NVIDGDAYLISSSFSYL 331 (342)
Q Consensus 272 ~~l~~~l~~~l~~-~Gv~i~~~t~V~~I~~~~~g~~~~v~t~~-G--~~i~a~~VI~At~~~~~ 331 (342)
..+...|.+.+++ .|++|++++.|++|..+ ++.+.+|.+.+ + .+++|+.||+||+.+..
T Consensus 128 ~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~-~g~v~Gv~~~~~~~~~~i~A~~VVlAtGG~~~ 190 (488)
T TIGR00551 128 REVITTLVKKALNHPNIRIIEGENALDLLIE-TGRVVGVWVWNRETVETCHADAVVLATGGAGK 190 (488)
T ss_pred HHHHHHHHHHHHhcCCcEEEECeEeeeeecc-CCEEEEEEEEECCcEEEEEcCEEEECCCcccC
Confidence 4678888888887 59999999999999874 55566665543 3 37899999999999864
No 98
>PRK08163 salicylate hydroxylase; Provisional
Probab=99.24 E-value=3.6e-11 Score=110.55 Aligned_cols=57 Identities=26% Similarity=0.359 Sum_probs=45.4
Q ss_pred ccchHHHHHHHhcC-cEEEecceeeEEEEcCCCCEEEEEecCCcEEEcCEEEEccCHHhh
Q 019346 273 RLCLPIVEHIQSLG-GEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYLISSSFSYL 331 (342)
Q Consensus 273 ~l~~~l~~~l~~~G-v~i~~~t~V~~I~~~~~g~~~~v~t~~G~~i~a~~VI~At~~~~~ 331 (342)
.+.+.|.+.+.+.| ++++++++|++++.++++ + .|++.+|+++.||.||.|.+.++.
T Consensus 110 ~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~-v-~v~~~~g~~~~ad~vV~AdG~~S~ 167 (396)
T PRK08163 110 DIHLSLLEAVLDHPLVEFRTSTHVVGIEQDGDG-V-TVFDQQGNRWTGDALIGCDGVKSV 167 (396)
T ss_pred HHHHHHHHHHHhcCCcEEEeCCEEEEEecCCCc-e-EEEEcCCCEEecCEEEECCCcChH
Confidence 45667777777664 899999999999875444 3 477888888999999999998864
No 99
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.23 E-value=1.4e-10 Score=111.24 Aligned_cols=59 Identities=10% Similarity=0.124 Sum_probs=47.6
Q ss_pred cccchHHHHHHHhcCcEEEecceeeEEEEcCCCCEEEEEe---cCCc--EEEcCEEEEccCHHh
Q 019346 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLL---TNGN--VIDGDAYLISSSFSY 330 (342)
Q Consensus 272 ~~l~~~l~~~l~~~Gv~i~~~t~V~~I~~~~~g~~~~v~t---~~G~--~i~a~~VI~At~~~~ 330 (342)
..++..|.+.+.+.|+++++++.|+++..+++|.+.+|.. .+|+ .+.|+.||+||+.+.
T Consensus 148 ~~l~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 211 (591)
T PRK07057 148 HALLHTLYQQNVAAKTQFFVEWMALDLIRDADGDVLGVTALEMETGDVYILEAKTTLFATGGAG 211 (591)
T ss_pred HHHHHHHHHHHHhcCCEEEeCcEEEEEEEcCCCeEEEEEEEEcCCCeEEEEECCeEEECCCCcc
Confidence 3578888888888899999999999998755677777765 3453 688999999998875
No 100
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=99.23 E-value=8.5e-11 Score=113.20 Aligned_cols=59 Identities=5% Similarity=0.109 Sum_probs=47.9
Q ss_pred cccchHHHHHHHhcCcEEEecceeeEEEEcCCCCEEEEEe---cCCc--EEEcCEEEEccCHHh
Q 019346 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLL---TNGN--VIDGDAYLISSSFSY 330 (342)
Q Consensus 272 ~~l~~~l~~~l~~~Gv~i~~~t~V~~I~~~~~g~~~~v~t---~~G~--~i~a~~VI~At~~~~ 330 (342)
..++..|.+.+.+.|++|++++.++++..++++.+.+|.. .+|+ .+.|+.||+||+.+.
T Consensus 187 ~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g 250 (635)
T PLN00128 187 HAMLHTLYGQAMKHNTQFFVEYFALDLIMDSDGACQGVIALNMEDGTLHRFRAHSTILATGGYG 250 (635)
T ss_pred HHHHHHHHHHHHhCCCEEEEeeEEEEEEEcCCCEEEEEEEEEcCCCeEEEEEcCeEEECCCCCc
Confidence 3577888888888899999999999988754677777765 2453 689999999998875
No 101
>PRK07045 putative monooxygenase; Reviewed
Probab=99.23 E-value=1e-10 Score=107.21 Aligned_cols=58 Identities=17% Similarity=0.319 Sum_probs=47.2
Q ss_pred ccchHHHHHHHh-cCcEEEecceeeEEEEcCCCCEEEEEecCCcEEEcCEEEEccCHHh
Q 019346 273 RLCLPIVEHIQS-LGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYLISSSFSY 330 (342)
Q Consensus 273 ~l~~~l~~~l~~-~Gv~i~~~t~V~~I~~~~~g~~~~v~t~~G~~i~a~~VI~At~~~~ 330 (342)
.|.+.|.+.+.+ .|++++++++|++|+.++++.++.|++.+|+++.+|.||-|.+.++
T Consensus 107 ~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~vIgADG~~S 165 (388)
T PRK07045 107 QLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVLVGADGARS 165 (388)
T ss_pred HHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEECCEEEECCCCCh
Confidence 355566666654 4799999999999998767766678888998999999999998885
No 102
>PRK06184 hypothetical protein; Provisional
Probab=99.23 E-value=5.1e-11 Score=112.75 Aligned_cols=58 Identities=12% Similarity=0.121 Sum_probs=44.4
Q ss_pred cchHHHHHHHhcCcEEEecceeeEEEEcCCCCEEEEEe-cCCcEEEcCEEEEccCHHhh
Q 019346 274 LCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLL-TNGNVIDGDAYLISSSFSYL 331 (342)
Q Consensus 274 l~~~l~~~l~~~Gv~i~~~t~V~~I~~~~~g~~~~v~t-~~G~~i~a~~VI~At~~~~~ 331 (342)
+-+.|.+.+.+.|++|+++++|++|+.++++..+.+.+ .++++++||.||.|.+.++.
T Consensus 111 le~~L~~~l~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~~~~~~i~a~~vVgADG~~S~ 169 (502)
T PRK06184 111 TERILRERLAELGHRVEFGCELVGFEQDADGVTARVAGPAGEETVRARYLVGADGGRSF 169 (502)
T ss_pred HHHHHHHHHHHCCCEEEeCcEEEEEEEcCCcEEEEEEeCCCeEEEEeCEEEECCCCchH
Confidence 44567777888899999999999998865654322222 45568999999999999864
No 103
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.22 E-value=1.4e-10 Score=111.39 Aligned_cols=59 Identities=7% Similarity=0.110 Sum_probs=48.4
Q ss_pred ccchHHHHHHHhcCcEEEecceeeEEEEcCCCCEEEEEe---cCCc--EEEcCEEEEccCHHhh
Q 019346 273 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLL---TNGN--VIDGDAYLISSSFSYL 331 (342)
Q Consensus 273 ~l~~~l~~~l~~~Gv~i~~~t~V~~I~~~~~g~~~~v~t---~~G~--~i~a~~VI~At~~~~~ 331 (342)
.++..|.+.+.+.|++|++++.|+++..++++.+.+|.. .+|+ .+.|+.||+||+.+..
T Consensus 150 ~i~~~L~~~~~~~gi~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~ 213 (598)
T PRK09078 150 AILHTLYQQSLKHNAEFFIEYFALDLIMDDGGVCRGVVAWNLDDGTLHRFRAHMVVLATGGYGR 213 (598)
T ss_pred HHHHHHHHHHhhcCCEEEEeEEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCCcc
Confidence 578888888888999999999999998755577778764 3564 7899999999988753
No 104
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.22 E-value=3.5e-10 Score=107.83 Aligned_cols=59 Identities=12% Similarity=0.148 Sum_probs=46.5
Q ss_pred cccchHHHHHHHhcCcEEEecceeeEEEEcCCCCEEEEEe---cCCc--EEEcCEEEEccCHHh
Q 019346 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLL---TNGN--VIDGDAYLISSSFSY 330 (342)
Q Consensus 272 ~~l~~~l~~~l~~~Gv~i~~~t~V~~I~~~~~g~~~~v~t---~~G~--~i~a~~VI~At~~~~ 330 (342)
..++..|.+.+.+.|++|++++.|+++..++++.+++|.. .+|+ .+.|+.||+||+.+.
T Consensus 134 ~~i~~~L~~~~~~~gv~i~~~t~v~~Li~~~~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~ 197 (543)
T PRK06263 134 HEMMMGLMEYLIKERIKILEEVMAIKLIVDENREVIGAIFLDLRNGEIFPIYAKATILATGGAG 197 (543)
T ss_pred HHHHHHHHHHHhcCCCEEEeCeEeeeeEEeCCcEEEEEEEEECCCCcEEEEEcCcEEECCCCCC
Confidence 3577788888888899999999999998755554666653 4563 689999999998875
No 105
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=99.22 E-value=8.8e-10 Score=105.73 Aligned_cols=45 Identities=31% Similarity=0.437 Sum_probs=40.9
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCcceee
Q 019346 54 PSKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (342)
Q Consensus 54 ~~~~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~~gG~~~~ 98 (342)
.+.++||||||||++|++||+.++++|.+|+|+||....||.+..
T Consensus 6 ~~~~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~~gG~~~~ 50 (574)
T PRK12842 6 NELTCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPVFGGTTAF 50 (574)
T ss_pred cCCCCCEEEECcCHHHHHHHHHHHHcCCeEEEEecCCCCCCccce
Confidence 345789999999999999999999999999999999999987654
No 106
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=99.22 E-value=1.6e-10 Score=107.37 Aligned_cols=43 Identities=33% Similarity=0.519 Sum_probs=39.4
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCccee
Q 019346 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIA 97 (342)
Q Consensus 55 ~~~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~~gG~~~ 97 (342)
....+|+|||||++||+||.+|++.|++|+|+|+++.+||...
T Consensus 8 ~~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~ 50 (461)
T PLN02172 8 INSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWV 50 (461)
T ss_pred CCCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceee
Confidence 3457999999999999999999999999999999999998764
No 107
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=99.21 E-value=9.8e-11 Score=107.20 Aligned_cols=57 Identities=14% Similarity=0.140 Sum_probs=47.0
Q ss_pred ccchHHHHHHHhcC-cEEEecceeeEEEEcCCCCEEEEEecCCcEEEcCEEEEccCHHhh
Q 019346 273 RLCLPIVEHIQSLG-GEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYLISSSFSYL 331 (342)
Q Consensus 273 ~l~~~l~~~l~~~G-v~i~~~t~V~~I~~~~~g~~~~v~t~~G~~i~a~~VI~At~~~~~ 331 (342)
.+.+.|.+.+.+.| ++++.+++|++|+.++++. .|++.+|+++.+|.||.|.+.++.
T Consensus 107 ~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~~~--~v~~~~g~~~~~~~vi~adG~~S~ 164 (385)
T TIGR01988 107 VLQQALWERLQEYPNVTLLCPARVVELPRHSDHV--ELTLDDGQQLRARLLVGADGANSK 164 (385)
T ss_pred HHHHHHHHHHHhCCCcEEecCCeEEEEEecCCee--EEEECCCCEEEeeEEEEeCCCCCH
Confidence 56777888888887 9999999999998754443 577888988999999999987753
No 108
>PRK08244 hypothetical protein; Provisional
Probab=99.21 E-value=1.2e-10 Score=110.15 Aligned_cols=57 Identities=18% Similarity=0.151 Sum_probs=43.2
Q ss_pred cchHHHHHHHhcCcEEEecceeeEEEEcCCCCEEEEEecCC-cEEEcCEEEEccCHHh
Q 019346 274 LCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNG-NVIDGDAYLISSSFSY 330 (342)
Q Consensus 274 l~~~l~~~l~~~Gv~i~~~t~V~~I~~~~~g~~~~v~t~~G-~~i~a~~VI~At~~~~ 330 (342)
+-+.|.+.+.+.|++++++++|++|+.++++..+.+...+| ++++||.||.|.+.++
T Consensus 102 le~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~a~~vVgADG~~S 159 (493)
T PRK08244 102 TEKVLEEHARSLGVEIFRGAEVLAVRQDGDGVEVVVRGPDGLRTLTSSYVVGADGAGS 159 (493)
T ss_pred HHHHHHHHHHHcCCeEEeCCEEEEEEEcCCeEEEEEEeCCccEEEEeCEEEECCCCCh
Confidence 44556667777899999999999998766654433444456 4799999999998876
No 109
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=99.21 E-value=1.5e-09 Score=104.08 Aligned_cols=60 Identities=13% Similarity=0.160 Sum_probs=48.0
Q ss_pred CcccchHHHHHHHhcCcEEEecceeeEEEEcCCCCEEEEEecC-Cc--EEEc-CEEEEccCHHhh
Q 019346 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTN-GN--VIDG-DAYLISSSFSYL 331 (342)
Q Consensus 271 ~~~l~~~l~~~l~~~Gv~i~~~t~V~~I~~~~~g~~~~v~t~~-G~--~i~a-~~VI~At~~~~~ 331 (342)
...++..|.+.++++|++|+++++|+++..+ ++.+.+|.+.+ |+ ++.| +.||+||+.+..
T Consensus 220 G~~l~~aL~~~~~~~Gv~i~~~t~v~~Li~~-~g~V~GV~~~~~g~~~~i~A~~~VVlAtGg~~~ 283 (578)
T PRK12843 220 GNALIGRLLYSLRARGVRILTQTDVESLETD-HGRVIGATVVQGGVRRRIRARGGVVLATGGFNR 283 (578)
T ss_pred cHHHHHHHHHHHHhCCCEEEeCCEEEEEEee-CCEEEEEEEecCCeEEEEEccceEEECCCCccc
Confidence 3468889999999999999999999999864 67777776644 32 5776 689999988864
No 110
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=99.21 E-value=3.6e-10 Score=103.64 Aligned_cols=56 Identities=14% Similarity=0.147 Sum_probs=45.3
Q ss_pred cccchHHHHHHHhcC-cEEEecceeeEEEEcCCCCEEEEEecCCcEEEcCEEEEccCHHh
Q 019346 272 ERLCLPIVEHIQSLG-GEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYLISSSFSY 330 (342)
Q Consensus 272 ~~l~~~l~~~l~~~G-v~i~~~t~V~~I~~~~~g~~~~v~t~~G~~i~a~~VI~At~~~~ 330 (342)
..+.+.|.+.+++.| ++++ ++.|++|+.++++. .|++.+|++++||.||.|.+.++
T Consensus 111 ~~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~~~~--~v~~~~g~~~~a~~vI~adG~~S 167 (388)
T PRK07608 111 SLIERALWAALRFQPNLTWF-PARAQGLEVDPDAA--TLTLADGQVLRADLVVGADGAHS 167 (388)
T ss_pred HHHHHHHHHHHHhCCCcEEE-cceeEEEEecCCeE--EEEECCCCEEEeeEEEEeCCCCc
Confidence 356677888888887 9998 99999998654443 58888887899999999999875
No 111
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=99.21 E-value=2.5e-10 Score=109.52 Aligned_cols=57 Identities=16% Similarity=0.158 Sum_probs=46.1
Q ss_pred ccchHHHHHHHhcCcEEEecceeeEEEEcCCCCEEEEEe---cCCc--EEEcCEEEEccCHHh
Q 019346 273 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLL---TNGN--VIDGDAYLISSSFSY 330 (342)
Q Consensus 273 ~l~~~l~~~l~~~Gv~i~~~t~V~~I~~~~~g~~~~v~t---~~G~--~i~a~~VI~At~~~~ 330 (342)
.+...|.+.+.+.|++|++++.|++|..+ ++.+.+|.. .+|+ .+.|+.||+||+.+.
T Consensus 130 ~i~~~L~~~~~~~gv~i~~~~~v~~L~~~-~g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~~ 191 (566)
T TIGR01812 130 ALLHTLYEQCLKLGVSFFNEYFALDLIHD-DGRVRGVVAYDLKTGEIVFFRAKAVVLATGGYG 191 (566)
T ss_pred HHHHHHHHHHHHcCCEEEeccEEEEEEEe-CCEEEEEEEEECCCCcEEEEECCeEEECCCccc
Confidence 57778888888889999999999999874 566666654 3564 689999999999875
No 112
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.21 E-value=8.1e-10 Score=105.45 Aligned_cols=44 Identities=30% Similarity=0.449 Sum_probs=40.2
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCcceee
Q 019346 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (342)
Q Consensus 55 ~~~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~~gG~~~~ 98 (342)
..++||+|||+|++|++||..+++.|.+|+|||+....||.+..
T Consensus 5 ~~~~DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~~~gG~~~~ 48 (557)
T PRK07843 5 VQEYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHYGGSTAR 48 (557)
T ss_pred CCcCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCccccc
Confidence 45789999999999999999999999999999999988887654
No 113
>PRK06834 hypothetical protein; Provisional
Probab=99.21 E-value=4.8e-11 Score=112.01 Aligned_cols=57 Identities=16% Similarity=0.213 Sum_probs=46.0
Q ss_pred ccchHHHHHHHhcCcEEEecceeeEEEEcCCCCEEEEEecCCcEEEcCEEEEccCHHhh
Q 019346 273 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYLISSSFSYL 331 (342)
Q Consensus 273 ~l~~~l~~~l~~~Gv~i~~~t~V~~I~~~~~g~~~~v~t~~G~~i~a~~VI~At~~~~~ 331 (342)
.+.+.|.+.+++.|++|+.+++|++|+.++++. .|++.+|++++||.||.|.+.++.
T Consensus 101 ~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~v--~v~~~~g~~i~a~~vVgADG~~S~ 157 (488)
T PRK06834 101 HIERILAEWVGELGVPIYRGREVTGFAQDDTGV--DVELSDGRTLRAQYLVGCDGGRSL 157 (488)
T ss_pred HHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCeE--EEEECCCCEEEeCEEEEecCCCCC
Confidence 345567777888899999999999998855543 467777878999999999998863
No 114
>PLN02463 lycopene beta cyclase
Probab=99.21 E-value=1.7e-10 Score=106.45 Aligned_cols=55 Identities=18% Similarity=0.256 Sum_probs=44.4
Q ss_pred ccchHHHHHHHhcCcEEEecceeeEEEEcCCCCEEEEEecCCcEEEcCEEEEccCHHh
Q 019346 273 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYLISSSFSY 330 (342)
Q Consensus 273 ~l~~~l~~~l~~~Gv~i~~~t~V~~I~~~~~g~~~~v~t~~G~~i~a~~VI~At~~~~ 330 (342)
.|.+.|.+.+.+.|++++ +++|++|+.++++ ..|++.+|++++|+.||.|++...
T Consensus 115 ~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~~~~--~~V~~~dG~~i~A~lVI~AdG~~s 169 (447)
T PLN02463 115 KLKSKMLERCIANGVQFH-QAKVKKVVHEESK--SLVVCDDGVKIQASLVLDATGFSR 169 (447)
T ss_pred HHHHHHHHHHhhcCCEEE-eeEEEEEEEcCCe--EEEEECCCCEEEcCEEEECcCCCc
Confidence 556678888888899995 6899999875444 358888998999999999998764
No 115
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.20 E-value=1.1e-10 Score=107.65 Aligned_cols=58 Identities=19% Similarity=0.320 Sum_probs=47.8
Q ss_pred cccchHHHHHHHhcCcEEEecceeeEEEEcCCCCEEEEEecCCcEEEcCEEEEccCHHhh
Q 019346 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYLISSSFSYL 331 (342)
Q Consensus 272 ~~l~~~l~~~l~~~Gv~i~~~t~V~~I~~~~~g~~~~v~t~~G~~i~a~~VI~At~~~~~ 331 (342)
..+.+.|.+.+.+.|++++++++|++|+.++++ +.|++.+|+++.||.||.|.+.++.
T Consensus 111 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~--v~v~~~~g~~~~ad~vI~AdG~~S~ 168 (403)
T PRK07333 111 RVLINALRKRAEALGIDLREATSVTDFETRDEG--VTVTLSDGSVLEARLLVAADGARSK 168 (403)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCE--EEEEECCCCEEEeCEEEEcCCCChH
Confidence 367778888888889999999999999875444 2577788888999999999988753
No 116
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=99.20 E-value=2.5e-10 Score=104.75 Aligned_cols=57 Identities=18% Similarity=0.264 Sum_probs=45.4
Q ss_pred ccchHHHHHHHhc-CcEEEecceeeEEEEcCCCCEEEEEecCCcEEEcCEEEEccCHHhh
Q 019346 273 RLCLPIVEHIQSL-GGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYLISSSFSYL 331 (342)
Q Consensus 273 ~l~~~l~~~l~~~-Gv~i~~~t~V~~I~~~~~g~~~~v~t~~G~~i~a~~VI~At~~~~~ 331 (342)
.+.+.|.+.+.+. |++++++++|+++..++++. .|++.+|++++||.||.|.+.++.
T Consensus 113 ~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~--~v~~~~g~~~~a~~vI~AdG~~S~ 170 (391)
T PRK08020 113 VLQLALWQALEAHPNVTLRCPASLQALQRDDDGW--ELTLADGEEIQAKLVIGADGANSQ 170 (391)
T ss_pred HHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCeE--EEEECCCCEEEeCEEEEeCCCCch
Confidence 4556677777766 99999999999998754443 577788889999999999998864
No 117
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=99.20 E-value=1.4e-10 Score=102.05 Aligned_cols=58 Identities=19% Similarity=0.252 Sum_probs=44.3
Q ss_pred cccchHHHHHHHhcCcEEEecceeeEEEEcCCCCEEEEEecCCcEEEcCEEEEccCHHh
Q 019346 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYLISSSFSY 330 (342)
Q Consensus 272 ~~l~~~l~~~l~~~Gv~i~~~t~V~~I~~~~~g~~~~v~t~~G~~i~a~~VI~At~~~~ 330 (342)
..+.+.|.+.+.+.|+++++++.|+++..++++..+.+ +.++.+++||.||.|++.++
T Consensus 91 ~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~~a~~vv~a~G~~s 148 (295)
T TIGR02032 91 DAFDEQLAERAQEAGAELRLGTTVLDVEIHDDRVVVIV-RGGEGTVTAKIVIGADGSRS 148 (295)
T ss_pred HHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCCEEEEEE-cCccEEEEeCEEEECCCcch
Confidence 35667788888888999999999999987555433222 23345899999999999874
No 118
>PRK10015 oxidoreductase; Provisional
Probab=99.20 E-value=1.9e-10 Score=106.42 Aligned_cols=56 Identities=13% Similarity=0.247 Sum_probs=42.9
Q ss_pred ccchHHHHHHHhcCcEEEecceeeEEEEcCCCCEEEEEecCCcEEEcCEEEEccCHHh
Q 019346 273 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYLISSSFSY 330 (342)
Q Consensus 273 ~l~~~l~~~l~~~Gv~i~~~t~V~~I~~~~~g~~~~v~t~~G~~i~a~~VI~At~~~~ 330 (342)
.|-+.|.+.+++.|++++.+++|++|..+ ++.+..+.+.+ .+++|+.||.|++..+
T Consensus 109 ~fd~~L~~~a~~~Gv~i~~~~~V~~i~~~-~~~v~~v~~~~-~~i~A~~VI~AdG~~s 164 (429)
T PRK10015 109 RLDPWLMEQAEQAGAQFIPGVRVDALVRE-GNKVTGVQAGD-DILEANVVILADGVNS 164 (429)
T ss_pred HHHHHHHHHHHHcCCEEECCcEEEEEEEe-CCEEEEEEeCC-eEEECCEEEEccCcch
Confidence 34455778888889999999999999874 44454555544 4899999999998764
No 119
>PRK07190 hypothetical protein; Provisional
Probab=99.19 E-value=1.5e-10 Score=108.52 Aligned_cols=55 Identities=24% Similarity=0.289 Sum_probs=44.3
Q ss_pred chHHHHHHHhcCcEEEecceeeEEEEcCCCCEEEEEecCCcEEEcCEEEEccCHHhh
Q 019346 275 CLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYLISSSFSYL 331 (342)
Q Consensus 275 ~~~l~~~l~~~Gv~i~~~t~V~~I~~~~~g~~~~v~t~~G~~i~a~~VI~At~~~~~ 331 (342)
-+.|.+.+.+.|++++.+++|++|+.++++. .+++.+|++++|+.||.|.+.++.
T Consensus 112 e~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~v--~v~~~~g~~v~a~~vVgADG~~S~ 166 (487)
T PRK07190 112 EKLLDDKLKEAGAAVKRNTSVVNIELNQAGC--LTTLSNGERIQSRYVIGADGSRSF 166 (487)
T ss_pred HHHHHHHHHHCCCEEEeCCEEEEEEEcCCee--EEEECCCcEEEeCEEEECCCCCHH
Confidence 3445667788899999999999999866654 356677889999999999998763
No 120
>PLN02815 L-aspartate oxidase
Probab=99.19 E-value=3.4e-10 Score=108.14 Aligned_cols=42 Identities=21% Similarity=0.363 Sum_probs=37.5
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCccee
Q 019346 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIA 97 (342)
Q Consensus 55 ~~~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~~gG~~~ 97 (342)
..++||+|||+|.+||+||..+++.| +|+|+||....||.+.
T Consensus 27 ~~~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~gg~s~ 68 (594)
T PLN02815 27 TKYFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHESNTN 68 (594)
T ss_pred ccccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCCCCcHH
Confidence 45689999999999999999999999 9999999998887543
No 121
>PRK09126 hypothetical protein; Provisional
Probab=99.19 E-value=1.3e-10 Score=106.76 Aligned_cols=55 Identities=22% Similarity=0.276 Sum_probs=42.2
Q ss_pred cchHHHHHHHh-cCcEEEecceeeEEEEcCCCCEEEEEecCCcEEEcCEEEEccCHHh
Q 019346 274 LCLPIVEHIQS-LGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYLISSSFSY 330 (342)
Q Consensus 274 l~~~l~~~l~~-~Gv~i~~~t~V~~I~~~~~g~~~~v~t~~G~~i~a~~VI~At~~~~ 330 (342)
+.+.|.+.+.+ .|++|+++++|++++.++++. .|++.+|++++||.||.|.+.++
T Consensus 112 l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~~~~--~v~~~~g~~~~a~~vI~AdG~~S 167 (392)
T PRK09126 112 IRRAAYEAVSQQDGIELLTGTRVTAVRTDDDGA--QVTLANGRRLTARLLVAADSRFS 167 (392)
T ss_pred HHHHHHHHHhhCCCcEEEcCCeEEEEEEcCCeE--EEEEcCCCEEEeCEEEEeCCCCc
Confidence 33445555543 589999999999998754442 57778888999999999998764
No 122
>PRK08013 oxidoreductase; Provisional
Probab=99.19 E-value=2.1e-10 Score=105.49 Aligned_cols=57 Identities=7% Similarity=0.115 Sum_probs=45.4
Q ss_pred ccchHHHHHHHhc-CcEEEecceeeEEEEcCCCCEEEEEecCCcEEEcCEEEEccCHHhh
Q 019346 273 RLCLPIVEHIQSL-GGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYLISSSFSYL 331 (342)
Q Consensus 273 ~l~~~l~~~l~~~-Gv~i~~~t~V~~I~~~~~g~~~~v~t~~G~~i~a~~VI~At~~~~~ 331 (342)
.|...|.+.+.+. |+++++++.|++|+.++++. .|++.+|++++||.||-|.+.++.
T Consensus 112 ~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v--~v~~~~g~~i~a~lvVgADG~~S~ 169 (400)
T PRK08013 112 VIHYALWQKAQQSSDITLLAPAELQQVAWGENEA--FLTLKDGSMLTARLVVGADGANSW 169 (400)
T ss_pred HHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeE--EEEEcCCCEEEeeEEEEeCCCCcH
Confidence 4556677777775 79999999999998755543 477788889999999999988753
No 123
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.19 E-value=1.2e-10 Score=109.22 Aligned_cols=44 Identities=30% Similarity=0.384 Sum_probs=39.5
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCcceeeec
Q 019346 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWK 100 (342)
Q Consensus 56 ~~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~~gG~~~~~~ 100 (342)
.++||+|||||++|++||..|++.|++|+|+|+.. .||.+....
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~~~g 46 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK-LGGTCLNRG 46 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc-cccceeecc
Confidence 46899999999999999999999999999999976 899875543
No 124
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=99.19 E-value=7.7e-11 Score=107.84 Aligned_cols=57 Identities=14% Similarity=0.165 Sum_probs=47.4
Q ss_pred cccchHHHHHHHh-cCcEEEecceeeEEEEcCCCCEEEEEecCCcEEEcCEEEEccCHHh
Q 019346 272 ERLCLPIVEHIQS-LGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYLISSSFSY 330 (342)
Q Consensus 272 ~~l~~~l~~~l~~-~Gv~i~~~t~V~~I~~~~~g~~~~v~t~~G~~i~a~~VI~At~~~~ 330 (342)
..|.+.|.+.+.+ .|++++++++|++|+.++++. .|++.+|+++.||.||.|.+.++
T Consensus 105 ~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~~--~v~~~~g~~~~ad~vV~AdG~~S 162 (382)
T TIGR01984 105 ADLGQALLSRLALLTNIQLYCPARYKEIIRNQDYV--RVTLDNGQQLRAKLLIAADGANS 162 (382)
T ss_pred HHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCeE--EEEECCCCEEEeeEEEEecCCCh
Confidence 4677888888887 499999999999998755553 47778887899999999999885
No 125
>PRK06116 glutathione reductase; Validated
Probab=99.18 E-value=8e-11 Score=109.95 Aligned_cols=56 Identities=20% Similarity=0.333 Sum_probs=45.4
Q ss_pred ccchHHHHHHHhcCcEEEecceeeEEEEcCCCCEEEEEecCCcEEEcCEEEEccCHH
Q 019346 273 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYLISSSFS 329 (342)
Q Consensus 273 ~l~~~l~~~l~~~Gv~i~~~t~V~~I~~~~~g~~~~v~t~~G~~i~a~~VI~At~~~ 329 (342)
.+...+.+.++++|++++++++|++|+.++++.+ .|++.+|+++.+|.||+|++..
T Consensus 209 ~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~g~~-~v~~~~g~~i~~D~Vv~a~G~~ 264 (450)
T PRK06116 209 DIRETLVEEMEKKGIRLHTNAVPKAVEKNADGSL-TLTLEDGETLTVDCLIWAIGRE 264 (450)
T ss_pred HHHHHHHHHHHHCCcEEECCCEEEEEEEcCCceE-EEEEcCCcEEEeCEEEEeeCCC
Confidence 4566778888899999999999999987545533 4777788889999999998654
No 126
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=99.18 E-value=1.6e-09 Score=102.53 Aligned_cols=42 Identities=36% Similarity=0.558 Sum_probs=38.5
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCccee
Q 019346 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIA 97 (342)
Q Consensus 55 ~~~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~~gG~~~ 97 (342)
+.++||||||+| +|++||+++++.|.+|+||||.+..||.+.
T Consensus 5 d~~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~Gg~t~ 46 (513)
T PRK12837 5 DEEVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKFGGTTA 46 (513)
T ss_pred CCccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCCCccee
Confidence 458899999999 999999999999999999999998888653
No 127
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=99.18 E-value=3.6e-11 Score=111.16 Aligned_cols=40 Identities=43% Similarity=0.608 Sum_probs=34.0
Q ss_pred eEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCcceee
Q 019346 59 KVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (342)
Q Consensus 59 dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~~gG~~~~ 98 (342)
||||||||++|++||+.+++.|.+|+|+|+.+.+||....
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~ 40 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATS 40 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGG
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceE
Confidence 8999999999999999999999999999999999997654
No 128
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.18 E-value=3.5e-10 Score=108.57 Aligned_cols=59 Identities=14% Similarity=0.110 Sum_probs=47.6
Q ss_pred cccchHHHHHHHhcCcEEEecceeeEEEEcCC---CCEEEEEe---cCCc--EEEcCEEEEccCHHh
Q 019346 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDD---GTVKNFLL---TNGN--VIDGDAYLISSSFSY 330 (342)
Q Consensus 272 ~~l~~~l~~~l~~~Gv~i~~~t~V~~I~~~~~---g~~~~v~t---~~G~--~i~a~~VI~At~~~~ 330 (342)
..++..|.+.+.+.|++|++++.|+++..+++ |.+.+|.. .+|+ .+.|+.||+||+.+.
T Consensus 140 ~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 206 (583)
T PRK08205 140 HMILQTLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGSG 206 (583)
T ss_pred HHHHHHHHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCCc
Confidence 46778888888888999999999999986542 67777764 3554 589999999998875
No 129
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=99.17 E-value=2e-10 Score=107.72 Aligned_cols=42 Identities=33% Similarity=0.438 Sum_probs=38.5
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCcceeee
Q 019346 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAW 99 (342)
Q Consensus 57 ~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~~gG~~~~~ 99 (342)
.+||+|||||++|++||..|++.|++|+|+|+ +.+||.+...
T Consensus 1 ~yDvvVIG~G~aGl~aA~~la~~G~~v~lie~-~~~GG~~~~~ 42 (461)
T TIGR01350 1 AYDVVVIGGGPGGYVAAIRAAQLGLKVALVEK-EYLGGTCLNV 42 (461)
T ss_pred CccEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCceeec
Confidence 37999999999999999999999999999999 8889987653
No 130
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=99.17 E-value=2.7e-10 Score=107.09 Aligned_cols=59 Identities=10% Similarity=0.186 Sum_probs=46.0
Q ss_pred ccchHHHHHHHhc-CcEEEecceeeEEEEcCCCCEEEEEecCCcEEEcCEEEEccCHHhhhc
Q 019346 273 RLCLPIVEHIQSL-GGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYLISSSFSYLKT 333 (342)
Q Consensus 273 ~l~~~l~~~l~~~-Gv~i~~~t~V~~I~~~~~g~~~~v~t~~G~~i~a~~VI~At~~~~~~~ 333 (342)
.+...|.+.+.+. |+++ .++.|++|.. +++.+.+|.+.+|..+.|+.||+||+.+.-..
T Consensus 101 ly~kaL~e~L~~~~nV~I-~q~~V~~Li~-e~grV~GV~t~dG~~I~Ak~VIlATGTFL~g~ 160 (618)
T PRK05192 101 LYRAAMREILENQPNLDL-FQGEVEDLIV-ENGRVVGVVTQDGLEFRAKAVVLTTGTFLRGK 160 (618)
T ss_pred HHHHHHHHHHHcCCCcEE-EEeEEEEEEe-cCCEEEEEEECCCCEEECCEEEEeeCcchhcC
Confidence 4556677777665 7888 5778999877 45667789999999999999999999876433
No 131
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.17 E-value=1.6e-10 Score=108.21 Aligned_cols=43 Identities=33% Similarity=0.427 Sum_probs=39.6
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCcceeee
Q 019346 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAW 99 (342)
Q Consensus 57 ~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~~gG~~~~~ 99 (342)
++||+|||||++|++||..+++.|++|+|+|+++.+||.|...
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c~~~ 45 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCLNV 45 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeeeccC
Confidence 4899999999999999999999999999999888899987543
No 132
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=99.16 E-value=1.2e-09 Score=101.53 Aligned_cols=58 Identities=26% Similarity=0.384 Sum_probs=46.6
Q ss_pred ccchHHHHHHHhcCcEEEecceeeEEEEcCCCCEEEEEecCCcEEEcCEEEEccCHHhh
Q 019346 273 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYLISSSFSYL 331 (342)
Q Consensus 273 ~l~~~l~~~l~~~Gv~i~~~t~V~~I~~~~~g~~~~v~t~~G~~i~a~~VI~At~~~~~ 331 (342)
++-+.|.+.+.++|+++..+ .|+++..+++|.+..|++.+|++++||.||-|++....
T Consensus 155 ~fd~~L~~~A~~~Gv~~~~g-~V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~s~ 212 (454)
T PF04820_consen 155 KFDQFLRRHAEERGVEVIEG-TVVDVELDEDGRITAVRLDDGRTIEADFFIDASGRRSL 212 (454)
T ss_dssp HHHHHHHHHHHHTT-EEEET--EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG-C
T ss_pred HHHHHHHHHHhcCCCEEEeC-EEEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCccch
Confidence 67778889999999999776 58888887888888999999999999999999987753
No 133
>PRK08401 L-aspartate oxidase; Provisional
Probab=99.16 E-value=1.2e-09 Score=102.30 Aligned_cols=57 Identities=16% Similarity=0.243 Sum_probs=45.8
Q ss_pred cccchHHHHHHHhcCcEEEecceeeEEEEcCCCCEEEEEecCCcEEEcCEEEEccCHHhh
Q 019346 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYLISSSFSYL 331 (342)
Q Consensus 272 ~~l~~~l~~~l~~~Gv~i~~~t~V~~I~~~~~g~~~~v~t~~G~~i~a~~VI~At~~~~~ 331 (342)
..+++.|.+.+++.|++++.+ .|+++.. +++.+.+|.+ +|+.+.|+.||+||+.+..
T Consensus 120 ~~i~~~L~~~~~~~gv~i~~~-~v~~l~~-~~g~v~Gv~~-~g~~i~a~~VVLATGG~~~ 176 (466)
T PRK08401 120 KHIIKILYKHARELGVNFIRG-FAEELAI-KNGKAYGVFL-DGELLKFDATVIATGGFSG 176 (466)
T ss_pred HHHHHHHHHHHHhcCCEEEEe-EeEEEEe-eCCEEEEEEE-CCEEEEeCeEEECCCcCcC
Confidence 368888999998999999865 7988876 4566667766 4558999999999998864
No 134
>PLN02697 lycopene epsilon cyclase
Probab=99.16 E-value=5.7e-10 Score=104.74 Aligned_cols=59 Identities=20% Similarity=0.201 Sum_probs=46.1
Q ss_pred ccchHHHHHHHhcCcEEEecceeeEEEEcCCCCEEEEEecCCcEEEcCEEEEccCHHhhhc
Q 019346 273 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYLISSSFSYLKT 333 (342)
Q Consensus 273 ~l~~~l~~~l~~~Gv~i~~~t~V~~I~~~~~g~~~~v~t~~G~~i~a~~VI~At~~~~~~~ 333 (342)
.|.+.|.+.+.+.|+++ +++.|++|..++++. ..+++.+|.+++|+.||.|++.++...
T Consensus 193 ~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~~~~-~vv~~~dG~~i~A~lVI~AdG~~S~rl 251 (529)
T PLN02697 193 LLHEELLRRCVESGVSY-LSSKVDRITEASDGL-RLVACEDGRVIPCRLATVASGAASGRL 251 (529)
T ss_pred HHHHHHHHHHHhcCCEE-EeeEEEEEEEcCCcE-EEEEEcCCcEEECCEEEECCCcChhhh
Confidence 56677888888889998 788999998754543 235567777999999999999988433
No 135
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=99.16 E-value=4.3e-10 Score=104.77 Aligned_cols=57 Identities=19% Similarity=0.174 Sum_probs=44.6
Q ss_pred ccchHHHHHHHhcCcEEEecceeeEEEEcCCCCEEEEEecCC-cEEEcCEEEEccCHHh
Q 019346 273 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNG-NVIDGDAYLISSSFSY 330 (342)
Q Consensus 273 ~l~~~l~~~l~~~Gv~i~~~t~V~~I~~~~~g~~~~v~t~~G-~~i~a~~VI~At~~~~ 330 (342)
.+...+.+.++++|+++++++.|++|..+.++. ..+++.+| +++.+|.||+|++...
T Consensus 208 ~~~~~~~~~l~~~gI~i~~~~~v~~i~~~~~~~-~~v~~~~g~~~i~~D~vi~a~G~~p 265 (450)
T TIGR01421 208 MISETITEEYEKEGINVHKLSKPVKVEKTVEGK-LVIHFEDGKSIDDVDELIWAIGRKP 265 (450)
T ss_pred HHHHHHHHHHHHcCCEEEcCCEEEEEEEeCCce-EEEEECCCcEEEEcCEEEEeeCCCc
Confidence 456677888888999999999999998643442 34667777 5799999999996653
No 136
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.16 E-value=5.2e-10 Score=107.26 Aligned_cols=58 Identities=16% Similarity=0.260 Sum_probs=46.5
Q ss_pred cccchHHHHHHHhcCcEEEecceeeEEEEcCCCCEEEEE---ecCCc--EEEcCEEEEccCHHh
Q 019346 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFL---LTNGN--VIDGDAYLISSSFSY 330 (342)
Q Consensus 272 ~~l~~~l~~~l~~~Gv~i~~~t~V~~I~~~~~g~~~~v~---t~~G~--~i~a~~VI~At~~~~ 330 (342)
..++..|.+.+.+.|++|++++.|+++..+ ++.+.++. +.+|+ .+.|+.||+||+.+.
T Consensus 135 ~~i~~~L~~~~~~~gi~i~~~t~v~~L~~~-~g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~~ 197 (575)
T PRK05945 135 HAILHELVNNLRRYGVTIYDEWYVMRLILE-DNQAKGVVMYHIADGRLEVVRAKAVMFATGGYG 197 (575)
T ss_pred HHHHHHHHHHHhhCCCEEEeCcEEEEEEEE-CCEEEEEEEEEcCCCeEEEEECCEEEECCCCCc
Confidence 367888888888889999999999999863 56666664 34563 589999999999875
No 137
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=99.15 E-value=4.1e-10 Score=103.08 Aligned_cols=57 Identities=21% Similarity=0.363 Sum_probs=47.0
Q ss_pred ccchHHHHHHHhcC-cEEEecceeeEEEEcCCCCEEEEEec-CCcEEEcCEEEEccCHHhh
Q 019346 273 RLCLPIVEHIQSLG-GEVRLNSRVQKIELNDDGTVKNFLLT-NGNVIDGDAYLISSSFSYL 331 (342)
Q Consensus 273 ~l~~~l~~~l~~~G-v~i~~~t~V~~I~~~~~g~~~~v~t~-~G~~i~a~~VI~At~~~~~ 331 (342)
.+.+.|.+.+.+.+ ++++.+++|+.++.++++.. ++.. +|++++||.||-|-+.++.
T Consensus 105 ~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~--v~l~~dG~~~~a~llVgADG~~S~ 163 (387)
T COG0654 105 DLLNALLEAARALPNVTLRFGAEVEAVEQDGDGVT--VTLSFDGETLDADLLVGADGANSA 163 (387)
T ss_pred HHHHHHHHHHhhCCCcEEEcCceEEEEEEcCCceE--EEEcCCCcEEecCEEEECCCCchH
Confidence 56777888888776 89999999999998654433 6666 9989999999999988764
No 138
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.14 E-value=6.3e-10 Score=107.46 Aligned_cols=41 Identities=24% Similarity=0.234 Sum_probs=37.1
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCcce
Q 019346 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKI 96 (342)
Q Consensus 56 ~~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~~gG~~ 96 (342)
.++||+|||||++|++||..+++.|.+|+|+||....+|.+
T Consensus 7 ~~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~~g~s 47 (626)
T PRK07803 7 HSYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFGKAHT 47 (626)
T ss_pred eeecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCCCCcc
Confidence 56899999999999999999999999999999998766643
No 139
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.14 E-value=1.3e-09 Score=104.60 Aligned_cols=40 Identities=33% Similarity=0.349 Sum_probs=36.6
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCcce
Q 019346 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKI 96 (342)
Q Consensus 57 ~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~~gG~~ 96 (342)
.+||+|||||++|++||..+++.|.+|+|+||....+|.+
T Consensus 3 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~~g~s 42 (589)
T PRK08641 3 KGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVKRSHS 42 (589)
T ss_pred CccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCCCCcc
Confidence 4699999999999999999999999999999998877654
No 140
>PRK07588 hypothetical protein; Provisional
Probab=99.14 E-value=4.7e-10 Score=102.99 Aligned_cols=55 Identities=20% Similarity=0.208 Sum_probs=41.7
Q ss_pred cchHHHHHHHhcCcEEEecceeeEEEEcCCCCEEEEEecCCcEEEcCEEEEccCHHhh
Q 019346 274 LCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYLISSSFSYL 331 (342)
Q Consensus 274 l~~~l~~~l~~~Gv~i~~~t~V~~I~~~~~g~~~~v~t~~G~~i~a~~VI~At~~~~~ 331 (342)
|...|.+.+ ..|++|+++++|++|+.++++ + .|++.+|+++++|.||-|.+.++.
T Consensus 105 l~~~L~~~~-~~~v~i~~~~~v~~i~~~~~~-v-~v~~~~g~~~~~d~vIgADG~~S~ 159 (391)
T PRK07588 105 LAAAIYTAI-DGQVETIFDDSIATIDEHRDG-V-RVTFERGTPRDFDLVIGADGLHSH 159 (391)
T ss_pred HHHHHHHhh-hcCeEEEeCCEEeEEEECCCe-E-EEEECCCCEEEeCEEEECCCCCcc
Confidence 334444444 347999999999999875554 3 478889988999999999998754
No 141
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=99.14 E-value=1.2e-09 Score=101.41 Aligned_cols=59 Identities=22% Similarity=0.225 Sum_probs=48.1
Q ss_pred cccchHHHHHHHhcCcEEEecceeeEEEEcC-CCCEEEEEecC-CcEEEcCEEEEccCHHh
Q 019346 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELND-DGTVKNFLLTN-GNVIDGDAYLISSSFSY 330 (342)
Q Consensus 272 ~~l~~~l~~~l~~~Gv~i~~~t~V~~I~~~~-~g~~~~v~t~~-G~~i~a~~VI~At~~~~ 330 (342)
..+++.|.+.+++.|++|+++++|++|..++ ++.+.+|.+.+ +.++.|+.||+||+.+.
T Consensus 123 ~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIlAtGG~~ 183 (432)
T TIGR02485 123 KALTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVLAAGGLG 183 (432)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEEcCCCcc
Confidence 4688889999999999999999999998753 56676776543 35899999999998653
No 142
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=99.14 E-value=3.8e-10 Score=103.06 Aligned_cols=61 Identities=16% Similarity=0.247 Sum_probs=48.1
Q ss_pred ccchHHHHHHHhcCcEEEecceeeEEEEcCCCCEEEEEecCCc--EEEcCEEEEccCHHhhhcC
Q 019346 273 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGN--VIDGDAYLISSSFSYLKTG 334 (342)
Q Consensus 273 ~l~~~l~~~l~~~Gv~i~~~t~V~~I~~~~~g~~~~v~t~~G~--~i~a~~VI~At~~~~~~~L 334 (342)
++.+.|.+.++++|++|+++++|++++.++ +.+..+.+.+|+ ++.||.||+|++......|
T Consensus 260 rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~~-~~V~~v~~~~g~~~~i~AD~VVLAtGrf~s~GL 322 (422)
T PRK05329 260 RLQNALRRAFERLGGRIMPGDEVLGAEFEG-GRVTAVWTRNHGDIPLRARHFVLATGSFFSGGL 322 (422)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEEeC-CEEEEEEeeCCceEEEECCEEEEeCCCcccCce
Confidence 677888888989999999999999998754 445455555553 6899999999998765554
No 143
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.14 E-value=1.3e-10 Score=106.56 Aligned_cols=58 Identities=10% Similarity=0.138 Sum_probs=44.9
Q ss_pred cccchHHHHHHHhcCcEEEecceeeEEEEcCCCCEEEEEecCCcEEEcCEEEEccCHHhh
Q 019346 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYLISSSFSYL 331 (342)
Q Consensus 272 ~~l~~~l~~~l~~~Gv~i~~~t~V~~I~~~~~g~~~~v~t~~G~~i~a~~VI~At~~~~~ 331 (342)
..+.+.|.+.+.+.+...+++++|++++.++++. .|++.+|++++||.||.|.+.++.
T Consensus 111 ~~l~~~L~~~~~~~~~~~~~~~~v~~i~~~~~~~--~v~~~~g~~~~a~~vI~AdG~~S~ 168 (388)
T PRK07494 111 WLLNRALEARVAELPNITRFGDEAESVRPREDEV--TVTLADGTTLSARLVVGADGRNSP 168 (388)
T ss_pred HHHHHHHHHHHhcCCCcEEECCeeEEEEEcCCeE--EEEECCCCEEEEeEEEEecCCCch
Confidence 3566778888877654347899999998755553 477888889999999999998753
No 144
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=99.14 E-value=1e-09 Score=112.74 Aligned_cols=44 Identities=43% Similarity=0.619 Sum_probs=40.2
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCccee
Q 019346 54 PSKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIA 97 (342)
Q Consensus 54 ~~~~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~~gG~~~ 97 (342)
...++||||||+|.+|++||..+++.|.+|+||||.+..||.+.
T Consensus 406 ~t~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG~s~ 449 (1167)
T PTZ00306 406 GSLPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGGNSA 449 (1167)
T ss_pred cCCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCCchh
Confidence 35678999999999999999999999999999999999998654
No 145
>PRK07236 hypothetical protein; Provisional
Probab=99.13 E-value=1.4e-09 Score=99.52 Aligned_cols=62 Identities=24% Similarity=0.278 Sum_probs=45.9
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCcceeeeccCCCceeecceeEecCCcccHHHHHHHcCCCc
Q 019346 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGIND 132 (342)
Q Consensus 56 ~~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~~gG~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~~gi~~ 132 (342)
...||+|||||++|+++|..|++.|++|+|+|+.+.... . .|.-. ...++..++++++|+..
T Consensus 5 ~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~---~----------~g~gi--~l~~~~~~~l~~lg~~~ 66 (386)
T PRK07236 5 SGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELD---G----------RGAGI--VLQPELLRALAEAGVAL 66 (386)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcC---C----------CCcee--EeCHHHHHHHHHcCCCc
Confidence 457999999999999999999999999999999864210 0 11110 02456778888888864
No 146
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=99.13 E-value=9.1e-10 Score=105.09 Aligned_cols=63 Identities=30% Similarity=0.412 Sum_probs=47.6
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCcceeeeccCCCceeecceeEecCCcccHHHHHHHcCCCcc
Q 019346 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGINDR 133 (342)
Q Consensus 55 ~~~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~~gG~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~~gi~~~ 133 (342)
...+||+|||||++|+++|..|++.|++|+|+|+.......... . ...+...++++++|+...
T Consensus 8 ~~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~~~ra------------~----~l~~~~~~~L~~lGl~~~ 70 (538)
T PRK06183 8 AHDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDLPRA------------V----GIDDEALRVLQAIGLADE 70 (538)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCce------------e----eeCHHHHHHHHHcCChhH
Confidence 56789999999999999999999999999999998765421111 0 123456678888887643
No 147
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.13 E-value=4.9e-10 Score=102.55 Aligned_cols=54 Identities=11% Similarity=0.191 Sum_probs=43.0
Q ss_pred hHHHHHHHhc-CcEEEecceeeEEEEcCCCCEEEEEecCCcEEEcCEEEEccCHHhh
Q 019346 276 LPIVEHIQSL-GGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYLISSSFSYL 331 (342)
Q Consensus 276 ~~l~~~l~~~-Gv~i~~~t~V~~I~~~~~g~~~~v~t~~G~~i~a~~VI~At~~~~~ 331 (342)
..|.+.+.+. |++++.++.|++++.++++. .|++.+|++++||.||.|.+.++.
T Consensus 114 ~~L~~~~~~~~~i~i~~~~~v~~~~~~~~~~--~v~~~~g~~~~~~lvIgADG~~S~ 168 (384)
T PRK08849 114 LGLWQQFAQYPNLTLMCPEKLADLEFSAEGN--RVTLESGAEIEAKWVIGADGANSQ 168 (384)
T ss_pred HHHHHHHHhCCCeEEECCCceeEEEEcCCeE--EEEECCCCEEEeeEEEEecCCCch
Confidence 3455555543 79999999999998865553 488889989999999999998864
No 148
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=99.13 E-value=1.5e-09 Score=104.43 Aligned_cols=58 Identities=9% Similarity=0.076 Sum_probs=44.4
Q ss_pred ccchHHHHHHHhcC-cEEEecceeeEEEEcCCCCEEEEE---ecCCc--EEEcCEEEEccCHHhh
Q 019346 273 RLCLPIVEHIQSLG-GEVRLNSRVQKIELNDDGTVKNFL---LTNGN--VIDGDAYLISSSFSYL 331 (342)
Q Consensus 273 ~l~~~l~~~l~~~G-v~i~~~t~V~~I~~~~~g~~~~v~---t~~G~--~i~a~~VI~At~~~~~ 331 (342)
.+...|.+.++++| ++|++++.|+++..+ ++.+.+|. +.+|+ ++.|+.||+||+.+..
T Consensus 133 ~~~~~L~~~a~~~ggV~i~~~~~v~~Li~~-~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~ 196 (608)
T PRK06854 133 SYKPIVAEAAKKALGDNVLNRVFITDLLVD-DNRIAGAVGFSVRENKFYVFKAKAVIVATGGAAG 196 (608)
T ss_pred HHHHHHHHHHHhcCCCEEEeCCEEEEEEEe-CCEEEEEEEEEccCCcEEEEECCEEEECCCchhh
Confidence 56677777887775 999999999999764 45565653 34553 6899999999998763
No 149
>PRK08071 L-aspartate oxidase; Provisional
Probab=99.13 E-value=6.8e-10 Score=104.84 Aligned_cols=57 Identities=14% Similarity=0.127 Sum_probs=43.7
Q ss_pred cccchHHHHHHHhcCcEEEecceeeEEEEcCCCCEEEEEecC--Cc--EEEcCEEEEccCHHh
Q 019346 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTN--GN--VIDGDAYLISSSFSY 330 (342)
Q Consensus 272 ~~l~~~l~~~l~~~Gv~i~~~t~V~~I~~~~~g~~~~v~t~~--G~--~i~a~~VI~At~~~~ 330 (342)
..+++.|.+.+. .|++|++++.|+++.. +++.+.+|.+.+ |+ .+.|+.||+||+.+.
T Consensus 130 ~~i~~~L~~~~~-~gV~i~~~~~v~~Li~-~~g~v~Gv~~~~~~g~~~~i~Ak~VVlATGG~~ 190 (510)
T PRK08071 130 KNLLEHLLQELV-PHVTVVEQEMVIDLII-ENGRCIGVLTKDSEGKLKRYYADYVVLASGGCG 190 (510)
T ss_pred HHHHHHHHHHHh-cCCEEEECeEhhheee-cCCEEEEEEEEECCCcEEEEEcCeEEEecCCCc
Confidence 356777777665 5899999999999976 456666776543 32 689999999998865
No 150
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=99.12 E-value=1.5e-10 Score=107.87 Aligned_cols=56 Identities=20% Similarity=0.247 Sum_probs=43.7
Q ss_pred cccchHHHHHHHhcCcEEEecceeeEEEEcCCCCEEEEEecCCcEEEcCEEEEccCHHh
Q 019346 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYLISSSFSY 330 (342)
Q Consensus 272 ~~l~~~l~~~l~~~Gv~i~~~t~V~~I~~~~~g~~~~v~t~~G~~i~a~~VI~At~~~~ 330 (342)
..+...+.+.++++|+++++++.|++|+.++ +. +.+++.+| ++.+|.||+|++...
T Consensus 199 ~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~-~~-v~v~~~~g-~i~~D~vl~a~G~~p 254 (441)
T PRK08010 199 RDIADNIATILRDQGVDIILNAHVERISHHE-NQ-VQVHSEHA-QLAVDALLIASGRQP 254 (441)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcC-CE-EEEEEcCC-eEEeCEEEEeecCCc
Confidence 3466777888889999999999999998643 32 24666677 799999999986553
No 151
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.12 E-value=1.8e-09 Score=103.61 Aligned_cols=57 Identities=12% Similarity=0.078 Sum_probs=44.6
Q ss_pred ccchHHHHHHHh-cCcEEEecceeeEEEEcCCCCEEEEEe---cCCc--EEEcCEEEEccCHHh
Q 019346 273 RLCLPIVEHIQS-LGGEVRLNSRVQKIELNDDGTVKNFLL---TNGN--VIDGDAYLISSSFSY 330 (342)
Q Consensus 273 ~l~~~l~~~l~~-~Gv~i~~~t~V~~I~~~~~g~~~~v~t---~~G~--~i~a~~VI~At~~~~ 330 (342)
.++..|.+.+.+ .|+++++++.|+++..+ ++.+.+|.. .+|+ .+.|+.||+||+.+.
T Consensus 138 ~i~~~L~~~~~~~~gv~i~~~~~v~~Li~~-~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~ 200 (577)
T PRK06069 138 YIMHTLYSRALRFDNIHFYDEHFVTSLIVE-NGVFKGVTAIDLKRGEFKVFQAKAGIIATGGAG 200 (577)
T ss_pred HHHHHHHHHHHhcCCCEEEECCEEEEEEEE-CCEEEEEEEEEcCCCeEEEEECCcEEEcCchhc
Confidence 577788887766 58999999999999863 566666543 3564 589999999999874
No 152
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=99.12 E-value=4.9e-10 Score=98.92 Aligned_cols=38 Identities=45% Similarity=0.717 Sum_probs=34.2
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCcce
Q 019346 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKI 96 (342)
Q Consensus 58 ~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~~gG~~ 96 (342)
+||+|||||++|++||..|++.|++|+|+|+.+ .||.+
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~gg~~ 38 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGME-PGGQL 38 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccC-CCcce
Confidence 699999999999999999999999999999876 56543
No 153
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=99.12 E-value=3.1e-09 Score=101.56 Aligned_cols=42 Identities=48% Similarity=0.718 Sum_probs=38.6
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCceEEEecCC--CCCccee
Q 019346 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD--VLGGKIA 97 (342)
Q Consensus 56 ~~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~--~~gG~~~ 97 (342)
.++||+|||+|.+||+||..+++.|.+|+||||.+ ..||.+.
T Consensus 3 ~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~~~~~GG~s~ 46 (549)
T PRK12834 3 MDADVIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGGQAF 46 (549)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCcee
Confidence 57899999999999999999999999999999999 7788654
No 154
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=99.12 E-value=4.2e-10 Score=108.93 Aligned_cols=57 Identities=14% Similarity=0.074 Sum_probs=45.2
Q ss_pred ccchHHHHHHHhcCcEEEecceeeEEEEcCCCCEEEEEe---cCCc--EEEcCEEEEccCHHh
Q 019346 273 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLL---TNGN--VIDGDAYLISSSFSY 330 (342)
Q Consensus 273 ~l~~~l~~~l~~~Gv~i~~~t~V~~I~~~~~g~~~~v~t---~~G~--~i~a~~VI~At~~~~ 330 (342)
.+...|.+.+.+.|++|+.+++|+++.. +++.+.+|.. .+|+ .+.|+.||+||+.+.
T Consensus 159 ~l~~~L~~~~~~~gv~i~~~~~~~~Li~-~~g~v~Gv~~~~~~~G~~~~i~AkaVVLATGG~g 220 (657)
T PRK08626 159 TMLYAVDNEAIKLGVPVHDRKEAIALIH-DGKRCYGAVVRCLITGELRAYVAKATLIATGGYG 220 (657)
T ss_pred HHHHHHHHHHHhCCCEEEeeEEEEEEEE-ECCEEEEEEEEEcCCCcEEEEEcCeEEECCCccc
Confidence 4666788888888999999999999987 4566666654 3563 467999999999875
No 155
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=99.12 E-value=5.3e-10 Score=104.07 Aligned_cols=42 Identities=33% Similarity=0.487 Sum_probs=38.0
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCceEEEecCCC-CCcceee
Q 019346 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV-LGGKIAA 98 (342)
Q Consensus 57 ~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~-~gG~~~~ 98 (342)
++||+|||||++|++||..|++.|++|+|+|+.+. .||.+..
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~~~GG~c~~ 45 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGTCIN 45 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCcccceeeec
Confidence 68999999999999999999999999999999864 6887654
No 156
>PLN02661 Putative thiazole synthesis
Probab=99.11 E-value=1.7e-09 Score=95.15 Aligned_cols=44 Identities=36% Similarity=0.356 Sum_probs=38.5
Q ss_pred CCCCCCCeEEEECCCHHHHHHHHHHHHc-CCceEEEecCCCCCcc
Q 019346 52 PRPSKPLKVVIAGAGLAGLSTAKYLADA-GHKPLLLEARDVLGGK 95 (342)
Q Consensus 52 ~~~~~~~dv~IiG~G~~G~~~A~~l~~~-g~~v~vle~~~~~gG~ 95 (342)
.....++||+|||||++|++||++|++. |++|+|+|+...+||.
T Consensus 87 l~~~~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG 131 (357)
T PLN02661 87 MITYADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGG 131 (357)
T ss_pred hhhcccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccc
Confidence 3445678999999999999999999986 8999999998888763
No 157
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.11 E-value=6.6e-09 Score=105.42 Aligned_cols=43 Identities=33% Similarity=0.520 Sum_probs=39.9
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCcceee
Q 019346 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (342)
Q Consensus 56 ~~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~~gG~~~~ 98 (342)
..+||+|||||++||+||..|++.|++|+|+|+.+.+||.+..
T Consensus 162 ~~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~ 204 (985)
T TIGR01372 162 AHCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLS 204 (985)
T ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeec
Confidence 4679999999999999999999999999999999999998754
No 158
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=99.11 E-value=4.5e-10 Score=105.49 Aligned_cols=44 Identities=32% Similarity=0.379 Sum_probs=39.5
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCcceeeec
Q 019346 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWK 100 (342)
Q Consensus 56 ~~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~~gG~~~~~~ 100 (342)
..+||+|||||++|++||..|++.|++|+|+|+. .+||.+....
T Consensus 3 ~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~~g 46 (472)
T PRK05976 3 KEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG-KLGGTCLHKG 46 (472)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCcceEcCC
Confidence 4689999999999999999999999999999995 7899886543
No 159
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=99.10 E-value=2e-09 Score=103.17 Aligned_cols=57 Identities=14% Similarity=0.138 Sum_probs=44.2
Q ss_pred ccchHHHHHHHhc-CcEEEecceeeEEEEcCCCCEEEEEe---cCC--cEEEcCEEEEccCHHh
Q 019346 273 RLCLPIVEHIQSL-GGEVRLNSRVQKIELNDDGTVKNFLL---TNG--NVIDGDAYLISSSFSY 330 (342)
Q Consensus 273 ~l~~~l~~~l~~~-Gv~i~~~t~V~~I~~~~~g~~~~v~t---~~G--~~i~a~~VI~At~~~~ 330 (342)
.+...|.+.+.+. ++++++++.|+++..+ ++.+.+|.. .+| ..++|+.||+||+.+.
T Consensus 134 ~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~-~g~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~ 196 (582)
T PRK09231 134 HMLHTLFQTSLKYPQIQRFDEHFVLDILVD-DGHVRGLVAMNMMEGTLVQIRANAVVMATGGAG 196 (582)
T ss_pred HHHHHHHHHhhcCCCcEEEeCeEEEEEEEe-CCEEEEEEEEEcCCCcEEEEECCEEEECCCCCc
Confidence 5667777777665 7999999999999874 566666543 456 3789999999998875
No 160
>PRK06185 hypothetical protein; Provisional
Probab=99.10 E-value=7.1e-10 Score=102.36 Aligned_cols=57 Identities=14% Similarity=0.121 Sum_probs=42.7
Q ss_pred ccchHHHHHHHhc-CcEEEecceeeEEEEcCCCCEEEEE--ecCCc-EEEcCEEEEccCHHh
Q 019346 273 RLCLPIVEHIQSL-GGEVRLNSRVQKIELNDDGTVKNFL--LTNGN-VIDGDAYLISSSFSY 330 (342)
Q Consensus 273 ~l~~~l~~~l~~~-Gv~i~~~t~V~~I~~~~~g~~~~v~--t~~G~-~i~a~~VI~At~~~~ 330 (342)
.+.+.|.+.+.+. |++++.+++|+++..++ +.+.+|+ +.+|+ +++|+.||.|.+.++
T Consensus 109 ~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~~-~~v~~v~~~~~~g~~~i~a~~vI~AdG~~S 169 (407)
T PRK06185 109 DFLDFLAEEASAYPNFTLRMGAEVTGLIEEG-GRVTGVRARTPDGPGEIRADLVVGADGRHS 169 (407)
T ss_pred HHHHHHHHHHhhCCCcEEEeCCEEEEEEEeC-CEEEEEEEEcCCCcEEEEeCEEEECCCCch
Confidence 4556677777664 89999999999998754 4343343 44664 799999999999886
No 161
>PRK08275 putative oxidoreductase; Provisional
Probab=99.10 E-value=3.4e-09 Score=101.28 Aligned_cols=58 Identities=14% Similarity=0.146 Sum_probs=47.1
Q ss_pred ccchHHHHHHHhcCcEEEecceeeEEEEcCCCCEEEEEe---cCCc--EEEcCEEEEccCHHh
Q 019346 273 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLL---TNGN--VIDGDAYLISSSFSY 330 (342)
Q Consensus 273 ~l~~~l~~~l~~~Gv~i~~~t~V~~I~~~~~g~~~~v~t---~~G~--~i~a~~VI~At~~~~ 330 (342)
.+...|.+.+++.|++|++++.|++|..++++.+.+|.. .+|+ .+.|+.||+||+.+.
T Consensus 138 ~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~ 200 (554)
T PRK08275 138 DIKKVLYRQLKRARVLITNRIMATRLLTDADGRVAGALGFDCRTGEFLVIRAKAVILCCGAAG 200 (554)
T ss_pred HHHHHHHHHHHHCCCEEEcceEEEEEEEcCCCeEEEEEEEecCCCcEEEEECCEEEECCCCcc
Confidence 577888888888899999999999998754666767653 3564 589999999999875
No 162
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=99.10 E-value=7.3e-10 Score=106.00 Aligned_cols=63 Identities=30% Similarity=0.354 Sum_probs=47.2
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCcceeeeccCCCceeecceeEecCCcccHHHHHHHcCCCc
Q 019346 54 PSKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGIND 132 (342)
Q Consensus 54 ~~~~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~~gG~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~~gi~~ 132 (342)
.+..+||+|||||++|+++|..|++.|++|+|+|+++........ . ...+...++++++|+..
T Consensus 20 ~~~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~~~ra-------------~---~l~~~~~~~l~~lGl~~ 82 (547)
T PRK08132 20 DPARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSRA-------------I---CFAKRSLEIFDRLGCGE 82 (547)
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCCCeE-------------E---EEcHHHHHHHHHcCCcH
Confidence 457789999999999999999999999999999998754221100 0 12345567788888764
No 163
>PRK07512 L-aspartate oxidase; Provisional
Probab=99.09 E-value=1.1e-09 Score=103.51 Aligned_cols=58 Identities=14% Similarity=0.250 Sum_probs=45.8
Q ss_pred cccchHHHHHHHhc-CcEEEecceeeEEEEcCCCCEEEEEecC-Cc--EEEcCEEEEccCHHh
Q 019346 272 ERLCLPIVEHIQSL-GGEVRLNSRVQKIELNDDGTVKNFLLTN-GN--VIDGDAYLISSSFSY 330 (342)
Q Consensus 272 ~~l~~~l~~~l~~~-Gv~i~~~t~V~~I~~~~~g~~~~v~t~~-G~--~i~a~~VI~At~~~~ 330 (342)
..++..|.+.+.+. |++|+.+++|+++..+ ++.+++|.+.+ ++ ++.|+.||+||+.+.
T Consensus 136 ~~l~~~L~~~~~~~~gV~i~~~~~v~~Li~~-~g~v~Gv~~~~~~~~~~i~Ak~VVLATGG~~ 197 (513)
T PRK07512 136 AAIMRALIAAVRATPSITVLEGAEARRLLVD-DGAVAGVLAATAGGPVVLPARAVVLATGGIG 197 (513)
T ss_pred HHHHHHHHHHHHhCCCCEEEECcChhheeec-CCEEEEEEEEeCCeEEEEECCEEEEcCCCCc
Confidence 46888888888775 8999999999998763 56676776543 32 689999999999874
No 164
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=99.09 E-value=2.4e-09 Score=102.44 Aligned_cols=59 Identities=14% Similarity=0.059 Sum_probs=45.7
Q ss_pred cccchHHHHHHHhc-CcEEEecceeeEEEEcCCCCEEEEEe---cCC--cEEEcCEEEEccCHHhh
Q 019346 272 ERLCLPIVEHIQSL-GGEVRLNSRVQKIELNDDGTVKNFLL---TNG--NVIDGDAYLISSSFSYL 331 (342)
Q Consensus 272 ~~l~~~l~~~l~~~-Gv~i~~~t~V~~I~~~~~g~~~~v~t---~~G--~~i~a~~VI~At~~~~~ 331 (342)
..++..|.+.+.+. |++++.++.|+++..+ ++.+.+|.. .+| ..+.|+.||+||+.+..
T Consensus 132 ~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~-~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~ 196 (580)
T TIGR01176 132 FHMLHTLFQTSLTYPQIMRYDEWFVTDLLVD-DGRVCGLVAIEMAEGRLVTILADAVVLATGGAGR 196 (580)
T ss_pred HHHHHHHHHHHHhcCCCEEEeCeEEEEEEee-CCEEEEEEEEEcCCCcEEEEecCEEEEcCCCCcc
Confidence 35777888777664 7999999999999874 566766653 356 37899999999988753
No 165
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=99.08 E-value=1.3e-09 Score=99.92 Aligned_cols=32 Identities=38% Similarity=0.578 Sum_probs=31.1
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCceEEEecC
Q 019346 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (342)
Q Consensus 58 ~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~ 89 (342)
+||+|||||++|+++|+.|++.|++|+|+|+.
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~ 32 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLERA 32 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 69999999999999999999999999999997
No 166
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=99.08 E-value=3.2e-09 Score=98.30 Aligned_cols=45 Identities=36% Similarity=0.481 Sum_probs=40.4
Q ss_pred CCCCCCeEEEECCCHHHHHHHHHHHHcCCc-eEEEecCCCCCccee
Q 019346 53 RPSKPLKVVIAGAGLAGLSTAKYLADAGHK-PLLLEARDVLGGKIA 97 (342)
Q Consensus 53 ~~~~~~dv~IiG~G~~G~~~A~~l~~~g~~-v~vle~~~~~gG~~~ 97 (342)
.....+||+|||||++|+++|++|.++|.. ++||||++.+||.-.
T Consensus 4 ~~~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~ 49 (443)
T COG2072 4 GVATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWR 49 (443)
T ss_pred CcCCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcch
Confidence 345678999999999999999999999988 999999999998643
No 167
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=99.08 E-value=1.4e-09 Score=104.59 Aligned_cols=58 Identities=14% Similarity=0.098 Sum_probs=43.3
Q ss_pred ccchHHHHHHHh----cCcEEEecceeeEEEEcCCCCEEEEEec---CCc--EEEcCEEEEccCHHh
Q 019346 273 RLCLPIVEHIQS----LGGEVRLNSRVQKIELNDDGTVKNFLLT---NGN--VIDGDAYLISSSFSY 330 (342)
Q Consensus 273 ~l~~~l~~~l~~----~Gv~i~~~t~V~~I~~~~~g~~~~v~t~---~G~--~i~a~~VI~At~~~~ 330 (342)
.++..|.+.+++ .|++|+++++|+++..++++.+++|... +|+ .+.|+.||+||+.+.
T Consensus 130 ~i~~~L~~~~~~~~~~~gV~i~~~t~v~~Li~dd~grV~GV~~~~~~~g~~~~i~AkaVVLATGG~g 196 (603)
T TIGR01811 130 QLLLALDSALRRQIAAGLVEKYEGWEMLDIIVVDGNRARGIIARNLVTGEIETHSADAVILATGGYG 196 (603)
T ss_pred HHHHHHHHHHHhhhccCCcEEEeCcEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCCc
Confidence 455555555543 3899999999999987656678788763 453 689999999998864
No 168
>PRK06370 mercuric reductase; Validated
Probab=99.07 E-value=2.2e-09 Score=100.69 Aligned_cols=43 Identities=33% Similarity=0.430 Sum_probs=37.8
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCcceeee
Q 019346 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAW 99 (342)
Q Consensus 56 ~~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~~gG~~~~~ 99 (342)
.++||+|||||++|++||..|++.|++|+|+|+. ..||.+...
T Consensus 4 ~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~~ 46 (463)
T PRK06370 4 QRYDAIVIGAGQAGPPLAARAAGLGMKVALIERG-LLGGTCVNT 46 (463)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCeEEEEecC-ccCCceecc
Confidence 4689999999999999999999999999999985 567766543
No 169
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.07 E-value=3e-09 Score=99.77 Aligned_cols=42 Identities=31% Similarity=0.385 Sum_probs=37.7
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCcceeee
Q 019346 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAW 99 (342)
Q Consensus 57 ~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~~gG~~~~~ 99 (342)
++||+|||||++|++||..|++.|++|+|+|+. ..||.+...
T Consensus 4 ~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~-~~GG~c~~~ 45 (466)
T PRK07818 4 HYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKK-YWGGVCLNV 45 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCceecC
Confidence 589999999999999999999999999999984 678877653
No 170
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=99.07 E-value=1.7e-09 Score=100.83 Aligned_cols=41 Identities=27% Similarity=0.459 Sum_probs=37.7
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCcceee
Q 019346 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (342)
Q Consensus 57 ~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~~gG~~~~ 98 (342)
++||+|||||++|++||..+++.|++|+|+|+ +.+||.+..
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~-~~~GG~c~~ 42 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEE-PRVGGTCVI 42 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEec-CccCceeec
Confidence 58999999999999999999999999999998 478987764
No 171
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=99.07 E-value=6.1e-09 Score=82.55 Aligned_cols=49 Identities=24% Similarity=0.468 Sum_probs=36.4
Q ss_pred HHHHHHHhcCcEEE-ecceeeEEEEcCCCCEEEEEecCCcEEEcCEEEEccCH
Q 019346 277 PIVEHIQSLGGEVR-LNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYLISSSF 328 (342)
Q Consensus 277 ~l~~~l~~~Gv~i~-~~t~V~~I~~~~~g~~~~v~t~~G~~i~a~~VI~At~~ 328 (342)
.+.+.+ ..|++|. .+.+|+.|...+++. .|++.+|..+.||+||+||+.
T Consensus 106 ~~~~~~-~~~i~v~~~~~~V~~i~~~~~~~--~v~~~~g~~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 106 RLLARL-PAGITVRHVRAEVVDIRRDDDGY--RVVTADGQSIRADAVVLATGH 155 (156)
T ss_pred HHHHhh-cCCcEEEEEeeEEEEEEEcCCcE--EEEECCCCEEEeCEEEECCCC
Confidence 344444 4465443 577999999876664 588899999999999999973
No 172
>PRK12831 putative oxidoreductase; Provisional
Probab=99.07 E-value=6.6e-09 Score=97.02 Aligned_cols=44 Identities=36% Similarity=0.454 Sum_probs=40.3
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCccee
Q 019346 54 PSKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIA 97 (342)
Q Consensus 54 ~~~~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~~gG~~~ 97 (342)
....+||+|||||++|++||+.|++.|++|+|+|+.+.+||.+.
T Consensus 137 ~~~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~ 180 (464)
T PRK12831 137 EKKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLV 180 (464)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeee
Confidence 45678999999999999999999999999999999999998764
No 173
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=99.07 E-value=2.9e-09 Score=90.60 Aligned_cols=61 Identities=23% Similarity=0.289 Sum_probs=51.7
Q ss_pred ccchHHHHHHHhcCcEEEecceeeEEEEcCCCCEEEEEecCCc--EEEcCEEEEccCHHhhhcC
Q 019346 273 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGN--VIDGDAYLISSSFSYLKTG 334 (342)
Q Consensus 273 ~l~~~l~~~l~~~Gv~i~~~t~V~~I~~~~~g~~~~v~t~~G~--~i~a~~VI~At~~~~~~~L 334 (342)
++-+.|...+++.|+.++.+.+|.+.+. .++.+..|.|.++. .++|+..|+|++.+..+-|
T Consensus 259 Rl~~~L~~~f~~~Gg~~m~Gd~V~~a~~-~~~~v~~i~trn~~diP~~a~~~VLAsGsffskGL 321 (421)
T COG3075 259 RLHNQLQRQFEQLGGLWMPGDEVKKATC-KGGRVTEIYTRNHADIPLRADFYVLASGSFFSKGL 321 (421)
T ss_pred hHHHHHHHHHHHcCceEecCCceeeeee-eCCeEEEEEecccccCCCChhHeeeeccccccccc
Confidence 5677888888889999999999999988 46667788888874 6899999999999877665
No 174
>PRK06126 hypothetical protein; Provisional
Probab=99.07 E-value=2.7e-09 Score=102.21 Aligned_cols=64 Identities=27% Similarity=0.308 Sum_probs=46.9
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCcceeeeccCCCceeecceeEecCCcccHHHHHHHcCCCcc
Q 019346 54 PSKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGINDR 133 (342)
Q Consensus 54 ~~~~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~~gG~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~~gi~~~ 133 (342)
.+.++||+|||||++|+++|..|++.|++|+|+|+.+...-.. .+ ....+...++++++|+...
T Consensus 4 ~~~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~~~~~~-------------ra---~~l~~r~~e~L~~lGl~~~ 67 (545)
T PRK06126 4 NTSETPVLIVGGGPVGLALALDLGRRGVDSILVERKDGTAFNP-------------KA---NTTSARSMEHFRRLGIADE 67 (545)
T ss_pred CCccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCC-------------cc---ccCCHHHHHHHHhcChHHH
Confidence 3567899999999999999999999999999999876422100 00 1124455678888887654
No 175
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.06 E-value=1.5e-09 Score=99.73 Aligned_cols=54 Identities=13% Similarity=0.225 Sum_probs=42.0
Q ss_pred chHHHHHHHh-cCcEEEecceeeEEEEcCCCCEEEEEecCCcEEEcCEEEEccCHHh
Q 019346 275 CLPIVEHIQS-LGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYLISSSFSY 330 (342)
Q Consensus 275 ~~~l~~~l~~-~Gv~i~~~t~V~~I~~~~~g~~~~v~t~~G~~i~a~~VI~At~~~~ 330 (342)
-+.|.+.+.+ .|++++++++|++|..++++. .|++.+|.++.||.||.|.+.++
T Consensus 115 ~~~l~~~~~~~~g~~~~~~~~v~~i~~~~~~~--~v~~~~g~~~~a~~vI~AdG~~S 169 (395)
T PRK05732 115 GQRLFALLDKAPGVTLHCPARVANVERTQGSV--RVTLDDGETLTGRLLVAADGSHS 169 (395)
T ss_pred HHHHHHHHhcCCCcEEEcCCEEEEEEEcCCeE--EEEECCCCEEEeCEEEEecCCCh
Confidence 3456666655 479999999999998744443 47788887899999999999875
No 176
>PRK09077 L-aspartate oxidase; Provisional
Probab=99.06 E-value=3.1e-09 Score=101.11 Aligned_cols=58 Identities=10% Similarity=0.047 Sum_probs=44.5
Q ss_pred ccchHHHHHHHhc-CcEEEecceeeEEEEcC-----CCCEEEEEec---CCc--EEEcCEEEEccCHHh
Q 019346 273 RLCLPIVEHIQSL-GGEVRLNSRVQKIELND-----DGTVKNFLLT---NGN--VIDGDAYLISSSFSY 330 (342)
Q Consensus 273 ~l~~~l~~~l~~~-Gv~i~~~t~V~~I~~~~-----~g~~~~v~t~---~G~--~i~a~~VI~At~~~~ 330 (342)
.+...|.+.+.++ |++|++++.|+++..++ ++.+++|... +|+ .+.|+.||+||+.+.
T Consensus 139 ~i~~~L~~~~~~~~~I~v~~~~~v~~Li~~~~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~~ 207 (536)
T PRK09077 139 AVQTTLVERARNHPNITVLERHNAIDLITSDKLGLPGRRVVGAYVLNRNKERVETIRAKFVVLATGGAS 207 (536)
T ss_pred HHHHHHHHHHHhCCCcEEEeeEEeeeeeecccccCCCCEEEEEEEEECCCCcEEEEecCeEEECCCCCC
Confidence 5667777777765 89999999999997643 3667777642 353 689999999998875
No 177
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=99.06 E-value=9.4e-10 Score=104.22 Aligned_cols=53 Identities=23% Similarity=0.319 Sum_probs=41.8
Q ss_pred chHHHHHHHhcCcEEEecceeeEEEEcCCCCEEEEEecCCcEEEcCEEEEccCHH
Q 019346 275 CLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYLISSSFS 329 (342)
Q Consensus 275 ~~~l~~~l~~~Gv~i~~~t~V~~I~~~~~g~~~~v~t~~G~~i~a~~VI~At~~~ 329 (342)
...+.+.+++.|++++++++|++|..+++. ..|++.+|+++.+|+||+||+..
T Consensus 270 ~~~l~~~l~~~gv~i~~~~~V~~I~~~~~~--~~v~~~~g~~i~~d~lIlAtGa~ 322 (515)
T TIGR03140 270 AANLEEHIKQYPIDLMENQRAKKIETEDGL--IVVTLESGEVLKAKSVIVATGAR 322 (515)
T ss_pred HHHHHHHHHHhCCeEEcCCEEEEEEecCCe--EEEEECCCCEEEeCEEEECCCCC
Confidence 344566667779999999999999874333 35777888789999999999976
No 178
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=99.06 E-value=1.5e-09 Score=100.14 Aligned_cols=55 Identities=16% Similarity=0.271 Sum_probs=43.1
Q ss_pred cchHHHHHHHhc-CcEEEecceeeEEEEcCCCCEEEEEecCCcEEEcCEEEEccCHHh
Q 019346 274 LCLPIVEHIQSL-GGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYLISSSFSY 330 (342)
Q Consensus 274 l~~~l~~~l~~~-Gv~i~~~t~V~~I~~~~~g~~~~v~t~~G~~i~a~~VI~At~~~~ 330 (342)
+...|.+.+.+. |++++++++|++|..++++. .|++.+|++++||.||.|.+.++
T Consensus 113 l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~--~v~~~~g~~~~a~lvIgADG~~S 168 (405)
T PRK08850 113 IQLALLEQVQKQDNVTLLMPARCQSIAVGESEA--WLTLDNGQALTAKLVVGADGANS 168 (405)
T ss_pred HHHHHHHHHhcCCCeEEEcCCeeEEEEeeCCeE--EEEECCCCEEEeCEEEEeCCCCC
Confidence 334566666654 79999999999998754443 57888898999999999999875
No 179
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=99.05 E-value=2.4e-09 Score=98.23 Aligned_cols=57 Identities=12% Similarity=0.116 Sum_probs=44.7
Q ss_pred cccchHHHHHHHhcCcEEEecceeeEEEEcCCCCEEEEEecCCcEEEcCEEEEccCHHh
Q 019346 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYLISSSFSY 330 (342)
Q Consensus 272 ~~l~~~l~~~l~~~Gv~i~~~t~V~~I~~~~~g~~~~v~t~~G~~i~a~~VI~At~~~~ 330 (342)
..|.+.|.+.+.+.|++++ ++.|+++..++++ .+.|++.+|++++|+.||.|++.++
T Consensus 85 ~~l~~~l~~~~~~~gv~~~-~~~v~~i~~~~~~-~~~v~~~~g~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 85 TRLHEELLQKCPEGGVLWL-ERKAIHAEADGVA-LSTVYCAGGQRIQARLVIDARGFGP 141 (388)
T ss_pred HHHHHHHHHHHHhcCcEEE-ccEEEEEEecCCc-eeEEEeCCCCEEEeCEEEECCCCch
Confidence 3566778888888899885 7789998764233 3457888888899999999999886
No 180
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=99.05 E-value=1e-10 Score=105.71 Aligned_cols=59 Identities=24% Similarity=0.299 Sum_probs=43.3
Q ss_pred ccchHHHHHHHhcCcEEEecceeeEEEEcCCCCEEEEEec-CC--cEEEcCEEEEccCHHhh
Q 019346 273 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT-NG--NVIDGDAYLISSSFSYL 331 (342)
Q Consensus 273 ~l~~~l~~~l~~~Gv~i~~~t~V~~I~~~~~g~~~~v~t~-~G--~~i~a~~VI~At~~~~~ 331 (342)
.|-+.|.+.+++.|++|+++++|++++.+.++....+... +| ++++||.||-|-+.++.
T Consensus 112 ~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~~~~~~~~~~~~g~~~~i~adlvVgADG~~S~ 173 (356)
T PF01494_consen 112 ELDRALREEAEERGVDIRFGTRVVSIEQDDDGVTVVVRDGEDGEEETIEADLVVGADGAHSK 173 (356)
T ss_dssp HHHHHHHHHHHHHTEEEEESEEEEEEEEETTEEEEEEEETCTCEEEEEEESEEEE-SGTT-H
T ss_pred HHHHhhhhhhhhhhhhheeeeecccccccccccccccccccCCceeEEEEeeeecccCcccc
Confidence 4667788888888999999999999988666543333333 34 27999999999988863
No 181
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=99.05 E-value=3.4e-09 Score=97.26 Aligned_cols=61 Identities=31% Similarity=0.442 Sum_probs=45.9
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCceEEEecCCCC--CcceeeeccCCCceeecceeEecCCcccHHHHHHHcCCCcc
Q 019346 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVL--GGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGINDR 133 (342)
Q Consensus 57 ~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~~--gG~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~~gi~~~ 133 (342)
.+||+|||||++|+++|..|++.|++|+|+|+++.. .+. .++..+ .++..++++++|+...
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~-------------~~a~~l---~~~~~~~l~~lGl~~~ 64 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSREYVEGR-------------IRAGVL---EQGTVDLLREAGVGER 64 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCccccccc-------------cceeEE---CHhHHHHHHHcCChHH
Confidence 579999999999999999999999999999998742 111 111111 3455678889987643
No 182
>PRK11445 putative oxidoreductase; Provisional
Probab=99.04 E-value=2.1e-09 Score=97.05 Aligned_cols=59 Identities=29% Similarity=0.389 Sum_probs=43.5
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCC--cceeeeccCCCceeecceeEecCCcccHHHHHHHcCCC
Q 019346 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLG--GKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGIN 131 (342)
Q Consensus 58 ~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~~g--G~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~~gi~ 131 (342)
+||+|||||++|+++|..|++. ++|+|+|+.+..+ |.... -|+ ...++..+.++++|+.
T Consensus 2 ~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~~~~~~~~~----------~g~----~l~~~~~~~L~~lgl~ 62 (351)
T PRK11445 2 YDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQCGTEGFSKP----------CGG----LLAPDAQKSFAKDGLT 62 (351)
T ss_pred ceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCccccccccCc----------CcC----ccCHHHHHHHHHcCCC
Confidence 7999999999999999999999 9999999987542 11000 111 1244566788888875
No 183
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=99.04 E-value=1.2e-09 Score=103.55 Aligned_cols=54 Identities=19% Similarity=0.282 Sum_probs=42.7
Q ss_pred cchHHHHHHHhcCcEEEecceeeEEEEcCCCCEEEEEecCCcEEEcCEEEEccCHH
Q 019346 274 LCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYLISSSFS 329 (342)
Q Consensus 274 l~~~l~~~l~~~Gv~i~~~t~V~~I~~~~~g~~~~v~t~~G~~i~a~~VI~At~~~ 329 (342)
+...+.+.+++.|+++++++.|++|...++. ..|++.+|+++.|++||+||+..
T Consensus 268 l~~~l~~~~~~~gv~i~~~~~V~~I~~~~~~--~~V~~~~g~~i~a~~vViAtG~~ 321 (517)
T PRK15317 268 LAAALEEHVKEYDVDIMNLQRASKLEPAAGL--IEVELANGAVLKAKTVILATGAR 321 (517)
T ss_pred HHHHHHHHHHHCCCEEEcCCEEEEEEecCCe--EEEEECCCCEEEcCEEEECCCCC
Confidence 3445666677779999999999999874433 35778888889999999999975
No 184
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=99.04 E-value=1.7e-09 Score=94.72 Aligned_cols=58 Identities=17% Similarity=0.257 Sum_probs=49.7
Q ss_pred cccchHHHHHHHhcCcEEEecceeeEEEEcCCCCEEEEEecC---------------CcEEEcCEEEEccCHH
Q 019346 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTN---------------GNVIDGDAYLISSSFS 329 (342)
Q Consensus 272 ~~l~~~l~~~l~~~Gv~i~~~t~V~~I~~~~~g~~~~v~t~~---------------G~~i~a~~VI~At~~~ 329 (342)
.++++.|-+.+++.||+|+-+-.+.++..+++|.+.+|.|.| |-.+.|+.-|+|-+.+
T Consensus 183 ~~~v~wLg~kAEe~GvEiyPg~aaSevly~edgsVkGiaT~D~GI~k~G~pKd~FerGme~hak~TifAEGc~ 255 (621)
T KOG2415|consen 183 GQLVRWLGEKAEELGVEIYPGFAASEVLYDEDGSVKGIATNDVGISKDGAPKDTFERGMEFHAKVTIFAEGCH 255 (621)
T ss_pred HHHHHHHHHHHHhhCceeccccchhheeEcCCCcEeeEeeccccccCCCCccccccccceecceeEEEecccc
Confidence 478888999999999999999999999999999999998865 2368899999987655
No 185
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.04 E-value=4e-09 Score=96.16 Aligned_cols=56 Identities=11% Similarity=0.045 Sum_probs=44.6
Q ss_pred ccchHHHHHHHhcC-cEEEecceeeEEEEcCCCCEEEEEecCCcEEEcCEEEEccCHHhh
Q 019346 273 RLCLPIVEHIQSLG-GEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYLISSSFSYL 331 (342)
Q Consensus 273 ~l~~~l~~~l~~~G-v~i~~~t~V~~I~~~~~g~~~~v~t~~G~~i~a~~VI~At~~~~~ 331 (342)
.|.+.|.+.+.+.+ +++++++.|++|..++++. .|++.++ +++||.||-|-+.++.
T Consensus 105 ~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v--~v~~~~~-~~~adlvIgADG~~S~ 161 (374)
T PRK06617 105 DFKKILLSKITNNPLITLIDNNQYQEVISHNDYS--IIKFDDK-QIKCNLLIICDGANSK 161 (374)
T ss_pred HHHHHHHHHHhcCCCcEEECCCeEEEEEEcCCeE--EEEEcCC-EEeeCEEEEeCCCCch
Confidence 56667777777764 8999999999998755543 4777777 9999999999988854
No 186
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=99.04 E-value=6.8e-10 Score=99.43 Aligned_cols=64 Identities=22% Similarity=0.202 Sum_probs=53.6
Q ss_pred CCcccchHHHHHHHhc-CcEEEecceeeEEEEcCCCCEEEEEec-----CCcEEEcCEEEEccCHHhhhcC
Q 019346 270 PPERLCLPIVEHIQSL-GGEVRLNSRVQKIELNDDGTVKNFLLT-----NGNVIDGDAYLISSSFSYLKTG 334 (342)
Q Consensus 270 ~~~~l~~~l~~~l~~~-Gv~i~~~t~V~~I~~~~~g~~~~v~t~-----~G~~i~a~~VI~At~~~~~~~L 334 (342)
+...|++.|.+.+.++ |++++++++|++|++.++|.. .|.+. +..+++|+.|++.++.+++.+|
T Consensus 179 nFG~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W-~v~~~~~~~~~~~~v~a~FVfvGAGG~aL~LL 248 (488)
T PF06039_consen 179 NFGALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGRW-EVKVKDLKTGEKREVRAKFVFVGAGGGALPLL 248 (488)
T ss_pred cHHHHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCCE-EEEEEecCCCCeEEEECCEEEECCchHhHHHH
Confidence 3678999999999988 999999999999999877732 34432 2358999999999999999888
No 187
>PRK06753 hypothetical protein; Provisional
Probab=99.03 E-value=2.5e-09 Score=97.51 Aligned_cols=36 Identities=33% Similarity=0.666 Sum_probs=33.4
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCC
Q 019346 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLG 93 (342)
Q Consensus 58 ~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~~g 93 (342)
+||+|||||++|+++|..|++.|++|+|+|+++.+.
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~ 36 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVK 36 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccc
Confidence 489999999999999999999999999999998653
No 188
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=99.03 E-value=4.5e-09 Score=97.75 Aligned_cols=59 Identities=10% Similarity=0.157 Sum_probs=45.3
Q ss_pred ccchHHHHHHHhcC---cEEEecceeeEEEEc-----CCCCEEEEEecCCcEEEcCEEEEccCHHhh
Q 019346 273 RLCLPIVEHIQSLG---GEVRLNSRVQKIELN-----DDGTVKNFLLTNGNVIDGDAYLISSSFSYL 331 (342)
Q Consensus 273 ~l~~~l~~~l~~~G---v~i~~~t~V~~I~~~-----~~g~~~~v~t~~G~~i~a~~VI~At~~~~~ 331 (342)
.+.+.|.+.+.+.+ ++++++++|++|+.+ +++..+.|++.+|++++||.||-|-+.++.
T Consensus 118 ~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v~v~~~~g~~i~a~llVgADG~~S~ 184 (437)
T TIGR01989 118 NIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWVHITLSDGQVLYTKLLIGADGSNSN 184 (437)
T ss_pred HHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCceEEEEcCCCEEEeeEEEEecCCCCh
Confidence 34556777777664 899999999999752 223334688889999999999999988864
No 189
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=99.02 E-value=5.2e-09 Score=96.18 Aligned_cols=47 Identities=36% Similarity=0.360 Sum_probs=42.8
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCcceeeeccC
Q 019346 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDG 102 (342)
Q Consensus 56 ~~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~~gG~~~~~~~~ 102 (342)
.+||++|||+|++|..||..+++.|.+|.++|+....||.|-...+.
T Consensus 3 ~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGtCln~GCI 49 (454)
T COG1249 3 KEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLNVGCI 49 (454)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCceEEeeCcc
Confidence 57999999999999999999999999999999998999998776644
No 190
>PRK05868 hypothetical protein; Validated
Probab=99.01 E-value=1.4e-09 Score=98.98 Aligned_cols=46 Identities=7% Similarity=0.044 Sum_probs=37.8
Q ss_pred hcCcEEEecceeeEEEEcCCCCEEEEEecCCcEEEcCEEEEccCHHhh
Q 019346 284 SLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYLISSSFSYL 331 (342)
Q Consensus 284 ~~Gv~i~~~t~V~~I~~~~~g~~~~v~t~~G~~i~a~~VI~At~~~~~ 331 (342)
..|+++++++.|++|+.++++ +.|++.+|++++||.||-|-+.++.
T Consensus 116 ~~~v~i~~~~~v~~i~~~~~~--v~v~~~dg~~~~adlvIgADG~~S~ 161 (372)
T PRK05868 116 QPSVEYLFDDSISTLQDDGDS--VRVTFERAAAREFDLVIGADGLHSN 161 (372)
T ss_pred cCCcEEEeCCEEEEEEecCCe--EEEEECCCCeEEeCEEEECCCCCch
Confidence 458999999999999864443 3578889889999999999988864
No 191
>PLN02507 glutathione reductase
Probab=99.00 E-value=5e-09 Score=98.73 Aligned_cols=55 Identities=9% Similarity=0.252 Sum_probs=43.8
Q ss_pred ccchHHHHHHHhcCcEEEecceeeEEEEcCCCCEEEEEecCCcEEEcCEEEEccCHH
Q 019346 273 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYLISSSFS 329 (342)
Q Consensus 273 ~l~~~l~~~l~~~Gv~i~~~t~V~~I~~~~~g~~~~v~t~~G~~i~a~~VI~At~~~ 329 (342)
.+...+.+.++++|++|++++.|++|+.++++. .+++.+|+++.+|.||+|++..
T Consensus 245 ~~~~~l~~~l~~~GI~i~~~~~V~~i~~~~~~~--~v~~~~g~~i~~D~vl~a~G~~ 299 (499)
T PLN02507 245 EMRAVVARNLEGRGINLHPRTNLTQLTKTEGGI--KVITDHGEEFVADVVLFATGRA 299 (499)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCeE--EEEECCCcEEEcCEEEEeecCC
Confidence 455666778888999999999999998643442 4677788889999999998654
No 192
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=99.00 E-value=3.6e-09 Score=94.55 Aligned_cols=56 Identities=18% Similarity=0.373 Sum_probs=44.0
Q ss_pred ccchHHHHHHHhc-CcEEEecceeeEEEEcCCCCEEEEEecCCcEEEcCEEEEccCHHh
Q 019346 273 RLCLPIVEHIQSL-GGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYLISSSFSY 330 (342)
Q Consensus 273 ~l~~~l~~~l~~~-Gv~i~~~t~V~~I~~~~~g~~~~v~t~~G~~i~a~~VI~At~~~~ 330 (342)
.+.+.+.+.++++ +++| .++.|++|.. +++.+.+|.|.+|+.+.||.||+||+++.
T Consensus 96 ~y~~~~~~~l~~~~nl~i-~~~~V~~l~~-e~~~v~GV~~~~g~~~~a~~vVlaTGtfl 152 (392)
T PF01134_consen 96 KYSRAMREKLESHPNLTI-IQGEVTDLIV-ENGKVKGVVTKDGEEIEADAVVLATGTFL 152 (392)
T ss_dssp HHHHHHHHHHHTSTTEEE-EES-EEEEEE-CTTEEEEEEETTSEEEEECEEEE-TTTGB
T ss_pred HHHHHHHHHHhcCCCeEE-EEcccceEEe-cCCeEEEEEeCCCCEEecCEEEEeccccc
Confidence 4455666777764 6888 4789999988 57888999999999999999999999853
No 193
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=99.00 E-value=1.3e-09 Score=93.13 Aligned_cols=37 Identities=35% Similarity=0.462 Sum_probs=33.6
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHc----CCceEEEecCCC
Q 019346 55 SKPLKVVIAGAGLAGLSTAKYLADA----GHKPLLLEARDV 91 (342)
Q Consensus 55 ~~~~dv~IiG~G~~G~~~A~~l~~~----g~~v~vle~~~~ 91 (342)
+..+||+|||||..|.++|+.|.++ |++|+|+|+.+.
T Consensus 84 ~~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddt 124 (509)
T KOG2853|consen 84 PYHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDT 124 (509)
T ss_pred ccccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCc
Confidence 4689999999999999999999874 799999999875
No 194
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=99.00 E-value=3.5e-09 Score=97.01 Aligned_cols=63 Identities=25% Similarity=0.380 Sum_probs=45.8
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCcceeeeccCCCceeecceeEecCCcccHHHHHHHcCCCcc
Q 019346 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGINDR 133 (342)
Q Consensus 57 ~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~~gG~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~~gi~~~ 133 (342)
.+||+|||||++|+++|..|++.|++|+|+|+.+... ... +.++..+ .++..++++++|+...
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~--~~~---------~~~a~~l---~~~~~~~L~~lGl~~~ 64 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSRDY--VLG---------RIRAGVL---EQGTVDLLREAGVDER 64 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCCcc--cCC---------ceeEeeE---CHHHHHHHHHCCChHH
Confidence 5799999999999999999999999999999987421 000 0112211 3446678888987643
No 195
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=99.00 E-value=3.2e-08 Score=92.27 Aligned_cols=43 Identities=44% Similarity=0.566 Sum_probs=39.3
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCccee
Q 019346 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIA 97 (342)
Q Consensus 55 ~~~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~~gG~~~ 97 (342)
...++|+|||||++|+++|+.|++.|++|+|+|+.+.+||.+.
T Consensus 131 ~~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~ 173 (449)
T TIGR01316 131 STHKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVT 173 (449)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEee
Confidence 4568999999999999999999999999999999998888653
No 196
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=99.00 E-value=3.5e-09 Score=99.47 Aligned_cols=33 Identities=39% Similarity=0.468 Sum_probs=31.6
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCceEEEec
Q 019346 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEA 88 (342)
Q Consensus 56 ~~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~ 88 (342)
.++|++|||||++|++||.++++.|.+|+|+|+
T Consensus 3 ~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~ 35 (475)
T PRK06327 3 KQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEA 35 (475)
T ss_pred cceeEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence 468999999999999999999999999999998
No 197
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.99 E-value=2.4e-09 Score=100.40 Aligned_cols=40 Identities=30% Similarity=0.454 Sum_probs=36.3
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCcceee
Q 019346 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (342)
Q Consensus 58 ~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~~gG~~~~ 98 (342)
+||+|||||++|++||..|++.|++|+|+|+.. .||.+..
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~-~GG~c~n 40 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP-LGGTCVN 40 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc-ccCCeee
Confidence 699999999999999999999999999999865 7887654
No 198
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=5.6e-09 Score=91.31 Aligned_cols=54 Identities=20% Similarity=0.280 Sum_probs=40.7
Q ss_pred ccchHHHHHHHhcCcEEEecceeeEEEEcCCCCEEEEEecCCcEEEcCEEEEccCHHh
Q 019346 273 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYLISSSFSY 330 (342)
Q Consensus 273 ~l~~~l~~~l~~~Gv~i~~~t~V~~I~~~~~g~~~~v~t~~G~~i~a~~VI~At~~~~ 330 (342)
.|.+.+.+.+...|+++.. ..|.+++..++ ...|+|.+| +++|+.||+||+...
T Consensus 62 ~L~~~~~~~a~~~~~~~~~-~~v~~v~~~~~--~F~v~t~~~-~~~ak~vIiAtG~~~ 115 (305)
T COG0492 62 ELMEQMKEQAEKFGVEIVE-DEVEKVELEGG--PFKVKTDKG-TYEAKAVIIATGAGA 115 (305)
T ss_pred HHHHHHHHHHhhcCeEEEE-EEEEEEeecCc--eEEEEECCC-eEEEeEEEECcCCcc
Confidence 3445566666667888866 78888876433 456999999 599999999998774
No 199
>PTZ00058 glutathione reductase; Provisional
Probab=98.98 E-value=4.2e-09 Score=99.92 Aligned_cols=47 Identities=26% Similarity=0.384 Sum_probs=41.5
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCcceeeecc
Q 019346 54 PSKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKD 101 (342)
Q Consensus 54 ~~~~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~~gG~~~~~~~ 101 (342)
...++||+|||||++|++||..+++.|.+|+|+|+. .+||.|....+
T Consensus 45 ~~~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~-~~GGtCln~GC 91 (561)
T PTZ00058 45 PRMVYDLIVIGGGSGGMAAARRAARNKAKVALVEKD-YLGGTCVNVGC 91 (561)
T ss_pred CCccccEEEECcCHHHHHHHHHHHHcCCeEEEEecc-cccccccccCC
Confidence 346789999999999999999999999999999985 78998876544
No 200
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=98.97 E-value=2.1e-09 Score=99.42 Aligned_cols=55 Identities=16% Similarity=0.276 Sum_probs=41.8
Q ss_pred ccchHHHHHHHhcCcEEEecceeeEEEEcCCCCEEEEEecCCcEEEcCEEEEccCHHhh
Q 019346 273 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYLISSSFSYL 331 (342)
Q Consensus 273 ~l~~~l~~~l~~~Gv~i~~~t~V~~I~~~~~g~~~~v~t~~G~~i~a~~VI~At~~~~~ 331 (342)
.|.+.|.+.+. ...++++++|++|+.++++. .|++.+|+++.||.||.|.+.++.
T Consensus 106 ~l~~~L~~~~~--~~~v~~~~~v~~i~~~~~~~--~v~~~~g~~~~ad~vVgADG~~S~ 160 (414)
T TIGR03219 106 DFLDALLKHLP--EGIASFGKRATQIEEQAEEV--QVLFTDGTEYRCDLLIGADGIKSA 160 (414)
T ss_pred HHHHHHHHhCC--CceEEcCCEEEEEEecCCcE--EEEEcCCCEEEeeEEEECCCccHH
Confidence 34555555543 35688999999998755553 577888889999999999998875
No 201
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.97 E-value=3.2e-08 Score=92.83 Aligned_cols=43 Identities=37% Similarity=0.435 Sum_probs=39.3
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCcceee
Q 019346 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (342)
Q Consensus 56 ~~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~~gG~~~~ 98 (342)
.++||+|||||++|++||..|++.|++|+|+|+.+..||.|..
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c~n 45 (471)
T PRK06467 3 IKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCLN 45 (471)
T ss_pred ccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCcccccccC
Confidence 3689999999999999999999999999999998888987754
No 202
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=98.97 E-value=1.5e-08 Score=94.03 Aligned_cols=38 Identities=32% Similarity=0.513 Sum_probs=35.1
Q ss_pred CCCCCCeEEEECCCHHHHHHHHHHHHcCCceEEEecCC
Q 019346 53 RPSKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (342)
Q Consensus 53 ~~~~~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~ 90 (342)
....++||+|||||++|++||+.|++.|++|+|+|++.
T Consensus 35 ~~~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~ 72 (450)
T PLN00093 35 LSGRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKL 72 (450)
T ss_pred cCCCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 45677999999999999999999999999999999975
No 203
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.96 E-value=1.9e-08 Score=98.16 Aligned_cols=43 Identities=33% Similarity=0.478 Sum_probs=39.5
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCccee
Q 019346 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIA 97 (342)
Q Consensus 55 ~~~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~~gG~~~ 97 (342)
....+|+|||||++||+||+.|++.|++|+|+|+.+.+||...
T Consensus 325 ~~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~ 367 (654)
T PRK12769 325 KSDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLT 367 (654)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceee
Confidence 3567999999999999999999999999999999999999764
No 204
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=98.96 E-value=6.8e-09 Score=97.69 Aligned_cols=59 Identities=12% Similarity=0.157 Sum_probs=46.4
Q ss_pred cccchHHHHHHHhc-CcEEEecceeeEEEEcCCCCEEEEEecCCcEEEcCEEEEccCHHhh
Q 019346 272 ERLCLPIVEHIQSL-GGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYLISSSFSYL 331 (342)
Q Consensus 272 ~~l~~~l~~~l~~~-Gv~i~~~t~V~~I~~~~~g~~~~v~t~~G~~i~a~~VI~At~~~~~ 331 (342)
..+...+.+.+++. |++++ +..|+++..++++.+.+|.+.+|..+.|+.||+||+.+..
T Consensus 96 ~~y~~~L~e~Le~~pgV~Il-e~~Vv~li~e~~g~V~GV~t~~G~~I~Ad~VILATGtfL~ 155 (617)
T TIGR00136 96 VLYRKAMRNALENQPNLSLF-QGEVEDLILEDNDEIKGVVTQDGLKFRAKAVIITTGTFLR 155 (617)
T ss_pred HHHHHHHHHHHHcCCCcEEE-EeEEEEEEEecCCcEEEEEECCCCEEECCEEEEccCcccC
Confidence 35566677777777 67885 5578888764466778999999989999999999999954
No 205
>PRK06475 salicylate hydroxylase; Provisional
Probab=98.96 E-value=4.8e-09 Score=96.57 Aligned_cols=59 Identities=7% Similarity=0.148 Sum_probs=42.5
Q ss_pred ccchHHHHHHHhc-CcEEEecceeeEEEEcCCCCEEEEEe-cCCcEEEcCEEEEccCHHhh
Q 019346 273 RLCLPIVEHIQSL-GGEVRLNSRVQKIELNDDGTVKNFLL-TNGNVIDGDAYLISSSFSYL 331 (342)
Q Consensus 273 ~l~~~l~~~l~~~-Gv~i~~~t~V~~I~~~~~g~~~~v~t-~~G~~i~a~~VI~At~~~~~ 331 (342)
.|.+.|.+.+.+. |++++++++|++++.++++..+.+.. .+++++.||.||-|-+.++.
T Consensus 108 ~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~~~v~v~~~~~~~~~~~~adlvIgADG~~S~ 168 (400)
T PRK06475 108 DLQSALLDACRNNPGIEIKLGAEMTSQRQTGNSITATIIRTNSVETVSAAYLIACDGVWSM 168 (400)
T ss_pred HHHHHHHHHHHhcCCcEEEECCEEEEEecCCCceEEEEEeCCCCcEEecCEEEECCCccHh
Confidence 4566677777654 79999999999998755553322222 33457999999999998864
No 206
>PRK06996 hypothetical protein; Provisional
Probab=98.94 E-value=1.7e-08 Score=92.89 Aligned_cols=54 Identities=7% Similarity=0.065 Sum_probs=43.1
Q ss_pred ccchHHHHHHHhcCcEEEecceeeEEEEcCCCCEEEEEecCC---cEEEcCEEEEccCH
Q 019346 273 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNG---NVIDGDAYLISSSF 328 (342)
Q Consensus 273 ~l~~~l~~~l~~~Gv~i~~~t~V~~I~~~~~g~~~~v~t~~G---~~i~a~~VI~At~~ 328 (342)
.+.+.|.+.+.+.|++++.+++|++++.++++. .++..+| ++++||.||-|.+.
T Consensus 116 ~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~~v--~v~~~~~~g~~~i~a~lvIgADG~ 172 (398)
T PRK06996 116 SLVAALARAVRGTPVRWLTSTTAHAPAQDADGV--TLALGTPQGARTLRARIAVQAEGG 172 (398)
T ss_pred HHHHHHHHHHHhCCCEEEcCCeeeeeeecCCeE--EEEECCCCcceEEeeeEEEECCCC
Confidence 566778888888899999999999998755554 3555543 58999999999884
No 207
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=98.94 E-value=7.4e-09 Score=91.31 Aligned_cols=36 Identities=36% Similarity=0.498 Sum_probs=31.0
Q ss_pred CeEEEECCCHHHHHHHHHHHHcC-CceEEEecCCCCC
Q 019346 58 LKVVIAGAGLAGLSTAKYLADAG-HKPLLLEARDVLG 93 (342)
Q Consensus 58 ~dv~IiG~G~~G~~~A~~l~~~g-~~v~vle~~~~~g 93 (342)
||+||||||.+|+.+|.+|++.| .+|+|||+.....
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~~~ 37 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPRYP 37 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBSCT
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEccccCc
Confidence 69999999999999999999997 6999999987644
No 208
>PRK10262 thioredoxin reductase; Provisional
Probab=98.93 E-value=8.7e-09 Score=91.97 Aligned_cols=43 Identities=35% Similarity=0.587 Sum_probs=37.5
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCcceee
Q 019346 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (342)
Q Consensus 55 ~~~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~~gG~~~~ 98 (342)
...+||+|||||++|++||..|+++|++++++|+. ..||.+..
T Consensus 4 ~~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~-~~gg~~~~ 46 (321)
T PRK10262 4 TKHSKLLILGSGPAGYTAAVYAARANLQPVLITGM-EKGGQLTT 46 (321)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEee-cCCCceec
Confidence 46789999999999999999999999999999965 56776543
No 209
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=98.93 E-value=3.4e-09 Score=95.18 Aligned_cols=63 Identities=19% Similarity=0.265 Sum_probs=55.7
Q ss_pred CCcccchHHHHHHHhcCcEEEecceeeEEEEcCCCCEEEEEecCCcEEEcCEEEEccCHHhhhcC
Q 019346 270 PPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYLISSSFSYLKTG 334 (342)
Q Consensus 270 ~~~~l~~~l~~~l~~~Gv~i~~~t~V~~I~~~~~g~~~~v~t~~G~~i~a~~VI~At~~~~~~~L 334 (342)
+|.+++..+.+.+.++|++++.+++|++|..+ ++.+..|.|++| +++||+||+|+++|+..+.
T Consensus 135 ~p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~-~~~~~~v~~~~g-~~~a~~vV~a~G~~~~~l~ 197 (337)
T TIGR02352 135 DPRALLKALEKALEKLGVEIIEHTEVQHIEIR-GEKVTAIVTPSG-DVQADQVVLAAGAWAGELL 197 (337)
T ss_pred ChHHHHHHHHHHHHHcCCEEEccceEEEEEee-CCEEEEEEcCCC-EEECCEEEEcCChhhhhcc
Confidence 48899999999999999999999999999874 555667888888 8999999999999987654
No 210
>PRK09897 hypothetical protein; Provisional
Probab=98.93 E-value=1.5e-08 Score=95.24 Aligned_cols=53 Identities=13% Similarity=0.141 Sum_probs=39.5
Q ss_pred chHHHHHHHhcC--cEEEecceeeEEEEcCCCCEEEEEecC-CcEEEcCEEEEccCHH
Q 019346 275 CLPIVEHIQSLG--GEVRLNSRVQKIELNDDGTVKNFLLTN-GNVIDGDAYLISSSFS 329 (342)
Q Consensus 275 ~~~l~~~l~~~G--v~i~~~t~V~~I~~~~~g~~~~v~t~~-G~~i~a~~VI~At~~~ 329 (342)
...+.+.+.+.| ++++.+++|++|+..+++. .|++.+ |.++.||+||+||+..
T Consensus 110 f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~~g~--~V~t~~gg~~i~aD~VVLAtGh~ 165 (534)
T PRK09897 110 FLRLVDQARQQKFAVAVYESCQVTDLQITNAGV--MLATNQDLPSETFDLAVIATGHV 165 (534)
T ss_pred HHHHHHHHHHcCCeEEEEECCEEEEEEEeCCEE--EEEECCCCeEEEcCEEEECCCCC
Confidence 344566666777 7888899999998755543 477655 4689999999999853
No 211
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=98.93 E-value=1.2e-08 Score=93.75 Aligned_cols=36 Identities=42% Similarity=0.575 Sum_probs=32.9
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCC
Q 019346 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLG 93 (342)
Q Consensus 58 ~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~~g 93 (342)
+||+|||||++|++||+.|+++|++|+|+|+....+
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~ 36 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDNA 36 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCC
Confidence 589999999999999999999999999999976533
No 212
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=98.93 E-value=3e-08 Score=99.51 Aligned_cols=43 Identities=30% Similarity=0.413 Sum_probs=39.8
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCccee
Q 019346 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIA 97 (342)
Q Consensus 55 ~~~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~~gG~~~ 97 (342)
+...+|+|||||+|||+||+.|++.|++|+|+|+.+.+||.+.
T Consensus 304 ~~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~ 346 (944)
T PRK12779 304 AVKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLR 346 (944)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEE
Confidence 4568999999999999999999999999999999999999764
No 213
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.93 E-value=4.5e-09 Score=100.41 Aligned_cols=40 Identities=35% Similarity=0.583 Sum_probs=35.6
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCcce
Q 019346 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKI 96 (342)
Q Consensus 56 ~~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~~gG~~ 96 (342)
..+||+|||||++|++||..|++.|++|+|+|+. ..||.+
T Consensus 3 ~~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~-~~GG~~ 42 (555)
T TIGR03143 3 EIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKD-DFGGQI 42 (555)
T ss_pred CcCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC-CCCceE
Confidence 3589999999999999999999999999999985 567654
No 214
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.93 E-value=3.4e-08 Score=83.96 Aligned_cols=40 Identities=38% Similarity=0.605 Sum_probs=36.8
Q ss_pred eEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCcceee
Q 019346 59 KVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (342)
Q Consensus 59 dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~~gG~~~~ 98 (342)
-|||||+|.+||+|+..+...|-.|+++|+...+||+..-
T Consensus 11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GGNSiK 50 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGGNSIK 50 (477)
T ss_pred cEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcCCccee
Confidence 5999999999999999999998889999999999997643
No 215
>PRK14694 putative mercuric reductase; Provisional
Probab=98.92 E-value=1.7e-08 Score=94.78 Aligned_cols=44 Identities=20% Similarity=0.422 Sum_probs=39.3
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCcceee
Q 019346 54 PSKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (342)
Q Consensus 54 ~~~~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~~gG~~~~ 98 (342)
....+||+|||||++|++||..|++.|++|+|+|+. .+||.+..
T Consensus 3 ~~~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~-~~GGtc~n 46 (468)
T PRK14694 3 SDNNLHIAVIGSGGSAMAAALKATERGARVTLIERG-TIGGTCVN 46 (468)
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEcc-ccccceec
Confidence 456789999999999999999999999999999985 68887654
No 216
>PTZ00052 thioredoxin reductase; Provisional
Probab=98.92 E-value=1e-08 Score=96.79 Aligned_cols=56 Identities=20% Similarity=0.116 Sum_probs=44.5
Q ss_pred ccchHHHHHHHhcCcEEEecceeeEEEEcCCCCEEEEEecCCcEEEcCEEEEccCHHh
Q 019346 273 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYLISSSFSY 330 (342)
Q Consensus 273 ~l~~~l~~~l~~~Gv~i~~~t~V~~I~~~~~g~~~~v~t~~G~~i~a~~VI~At~~~~ 330 (342)
.+.+.+.+.++++|+++++++.|++|...+++ ..+++.+|+++.+|.||+|++...
T Consensus 223 ~~~~~l~~~l~~~GV~i~~~~~v~~v~~~~~~--~~v~~~~g~~i~~D~vl~a~G~~p 278 (499)
T PTZ00052 223 QCSEKVVEYMKEQGTLFLEGVVPINIEKMDDK--IKVLFSDGTTELFDTVLYATGRKP 278 (499)
T ss_pred HHHHHHHHHHHHcCCEEEcCCeEEEEEEcCCe--EEEEECCCCEEEcCEEEEeeCCCC
Confidence 45677888888999999999999999864333 246677787899999999997653
No 217
>PRK13748 putative mercuric reductase; Provisional
Probab=98.92 E-value=1.5e-08 Score=97.44 Aligned_cols=54 Identities=15% Similarity=0.218 Sum_probs=43.1
Q ss_pred ccchHHHHHHHhcCcEEEecceeeEEEEcCCCCEEEEEecCCcEEEcCEEEEccCHH
Q 019346 273 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYLISSSFS 329 (342)
Q Consensus 273 ~l~~~l~~~l~~~Gv~i~~~t~V~~I~~~~~g~~~~v~t~~G~~i~a~~VI~At~~~ 329 (342)
.+...+.+.++++|++|++++.|++|+.+ ++. +.+.+.++ ++.+|.||+|++..
T Consensus 311 ~~~~~l~~~l~~~gI~i~~~~~v~~i~~~-~~~-~~v~~~~~-~i~~D~vi~a~G~~ 364 (561)
T PRK13748 311 AIGEAVTAAFRAEGIEVLEHTQASQVAHV-DGE-FVLTTGHG-ELRADKLLVATGRA 364 (561)
T ss_pred HHHHHHHHHHHHCCCEEEcCCEEEEEEec-CCE-EEEEecCC-eEEeCEEEEccCCC
Confidence 56677788888999999999999999864 332 24666666 79999999999765
No 218
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=98.91 E-value=1.2e-08 Score=98.64 Aligned_cols=61 Identities=25% Similarity=0.385 Sum_probs=46.6
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHH-cCCceEEEecCCCC--CcceeeeccCCCceeecceeEecCCcccHHHHHHHcCCC
Q 019346 55 SKPLKVVIAGAGLAGLSTAKYLAD-AGHKPLLLEARDVL--GGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGIN 131 (342)
Q Consensus 55 ~~~~dv~IiG~G~~G~~~A~~l~~-~g~~v~vle~~~~~--gG~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~~gi~ 131 (342)
+.++||+|||||++||++|..|++ .|.+|+|+|+++.. .|+.. +..+...++++.+|+.
T Consensus 30 ~~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~~~grA~------------------gl~prtleiL~~lGl~ 91 (634)
T PRK08294 30 PDEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRLELGQAD------------------GIACRTMEMFQAFGFA 91 (634)
T ss_pred CCCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCCeee------------------EEChHHHHHHHhccch
Confidence 457899999999999999999999 49999999998542 12111 1245667888888876
Q ss_pred cc
Q 019346 132 DR 133 (342)
Q Consensus 132 ~~ 133 (342)
..
T Consensus 92 d~ 93 (634)
T PRK08294 92 ER 93 (634)
T ss_pred HH
Confidence 43
No 219
>PRK07538 hypothetical protein; Provisional
Probab=98.91 E-value=2.3e-08 Score=92.42 Aligned_cols=35 Identities=40% Similarity=0.605 Sum_probs=32.7
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCceEEEecCCCC
Q 019346 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVL 92 (342)
Q Consensus 58 ~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~~ 92 (342)
+||+|||||++|+++|..|++.|++|+|+|+.+.+
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~ 35 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPEL 35 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcc
Confidence 48999999999999999999999999999998654
No 220
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=98.90 E-value=1.1e-08 Score=91.95 Aligned_cols=58 Identities=24% Similarity=0.315 Sum_probs=47.7
Q ss_pred CcccchHHHHHHHhcCcEEEecceeeEEEEcCCCCEEEEEecCCc-EEEcCEEEEccCHHhhhcC
Q 019346 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGN-VIDGDAYLISSSFSYLKTG 334 (342)
Q Consensus 271 ~~~l~~~l~~~l~~~Gv~i~~~t~V~~I~~~~~g~~~~v~t~~G~-~i~a~~VI~At~~~~~~~L 334 (342)
+.++.+...+.|+++||+++++++|++|+. ++ |++.+|+ +|.|+.||.|++......+
T Consensus 208 ~~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~--~~----v~~~~g~~~I~~~tvvWaaGv~a~~~~ 266 (405)
T COG1252 208 PPKLSKYAERALEKLGVEVLLGTPVTEVTP--DG----VTLKDGEEEIPADTVVWAAGVRASPLL 266 (405)
T ss_pred CHHHHHHHHHHHHHCCCEEEcCCceEEECC--Cc----EEEccCCeeEecCEEEEcCCCcCChhh
Confidence 567888888899999999999999999974 33 7788886 4999999999976654333
No 221
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=98.90 E-value=4.2e-08 Score=99.28 Aligned_cols=42 Identities=40% Similarity=0.503 Sum_probs=38.9
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCccee
Q 019346 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIA 97 (342)
Q Consensus 56 ~~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~~gG~~~ 97 (342)
...+|+|||||++||+||+.|++.|++|+|+|+.+.+||.+.
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~ 470 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQ 470 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceee
Confidence 467999999999999999999999999999999999998754
No 222
>PRK14727 putative mercuric reductase; Provisional
Probab=98.89 E-value=3.7e-08 Score=92.69 Aligned_cols=46 Identities=30% Similarity=0.447 Sum_probs=41.5
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCcceeee
Q 019346 54 PSKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAW 99 (342)
Q Consensus 54 ~~~~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~~gG~~~~~ 99 (342)
.+.++|++|||||++|+++|..|++.|.+|+|+|+.+.+||.+...
T Consensus 13 ~~~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG~c~n~ 58 (479)
T PRK14727 13 SKLQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGGCCVNV 58 (479)
T ss_pred CCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcceeEeccc
Confidence 3467899999999999999999999999999999988899988653
No 223
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=98.89 E-value=4.1e-08 Score=97.33 Aligned_cols=43 Identities=37% Similarity=0.471 Sum_probs=39.4
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCccee
Q 019346 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIA 97 (342)
Q Consensus 55 ~~~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~~gG~~~ 97 (342)
...++|+|||||++|++||+.|++.|++|+|+|+.+.+||...
T Consensus 429 ~~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~ 471 (752)
T PRK12778 429 KNGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLK 471 (752)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeee
Confidence 4567999999999999999999999999999999988898754
No 224
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=98.89 E-value=3.8e-09 Score=88.26 Aligned_cols=63 Identities=13% Similarity=0.109 Sum_probs=46.3
Q ss_pred CCcccchHHHHHHHhcC-cEEEecceeeEEEEcCCCCEEEEEec---C-CcEEEcCEEEEccCHHhhhcC
Q 019346 270 PPERLCLPIVEHIQSLG-GEVRLNSRVQKIELNDDGTVKNFLLT---N-GNVIDGDAYLISSSFSYLKTG 334 (342)
Q Consensus 270 ~~~~l~~~l~~~l~~~G-v~i~~~t~V~~I~~~~~g~~~~v~t~---~-G~~i~a~~VI~At~~~~~~~L 334 (342)
+|+.|++.|+..+.+.| |++.. -.|.++.. +.+++..+... + +....++++|++.++|+..+|
T Consensus 145 hP~lFc~~i~sea~k~~~V~lv~-Gkv~ev~d-Ek~r~n~v~~ae~~~ti~~~d~~~ivvsaGPWTskll 212 (380)
T KOG2852|consen 145 HPYLFCHFILSEAEKRGGVKLVF-GKVKEVSD-EKHRINSVPKAEAEDTIIKADVHKIVVSAGPWTSKLL 212 (380)
T ss_pred CHHHHHHHHHHHHHhhcCeEEEE-eeeEEeec-ccccccccchhhhcCceEEeeeeEEEEecCCCchhhc
Confidence 48999999999998886 88855 46888863 44444334332 2 346778999999999998877
No 225
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=98.89 E-value=1.4e-07 Score=88.39 Aligned_cols=43 Identities=42% Similarity=0.568 Sum_probs=39.1
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCccee
Q 019346 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIA 97 (342)
Q Consensus 55 ~~~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~~gG~~~ 97 (342)
...++|+|||||++|+++|+.|++.|++|+|+|+.+.+||...
T Consensus 138 ~~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~ 180 (457)
T PRK11749 138 KTGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLR 180 (457)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEee
Confidence 4567999999999999999999999999999999999988653
No 226
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=98.88 E-value=1.1e-07 Score=94.51 Aligned_cols=43 Identities=40% Similarity=0.605 Sum_probs=39.7
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCccee
Q 019346 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIA 97 (342)
Q Consensus 55 ~~~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~~gG~~~ 97 (342)
....+|+|||||++|++||+.|++.|++|+|+|+.+.+||.+.
T Consensus 537 ~tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr 579 (1019)
T PRK09853 537 GSRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVK 579 (1019)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCccee
Confidence 4567999999999999999999999999999999999999764
No 227
>PLN02985 squalene monooxygenase
Probab=98.88 E-value=4.3e-08 Score=92.52 Aligned_cols=39 Identities=31% Similarity=0.411 Sum_probs=35.4
Q ss_pred CCCCCCeEEEECCCHHHHHHHHHHHHcCCceEEEecCCC
Q 019346 53 RPSKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (342)
Q Consensus 53 ~~~~~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~ 91 (342)
.....+||+|||||++|+++|..|++.|++|+|+|+...
T Consensus 39 ~~~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~ 77 (514)
T PLN02985 39 RKDGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLR 77 (514)
T ss_pred CcCCCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCC
Confidence 356778999999999999999999999999999999753
No 228
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=98.86 E-value=7.1e-08 Score=92.49 Aligned_cols=58 Identities=9% Similarity=0.102 Sum_probs=43.2
Q ss_pred ccchHHHHHHHhcCcEEEecceeeEEEEcCC--CCEEEEEe---cCCc--EEEcCEEEEccCHHh
Q 019346 273 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDD--GTVKNFLL---TNGN--VIDGDAYLISSSFSY 330 (342)
Q Consensus 273 ~l~~~l~~~l~~~Gv~i~~~t~V~~I~~~~~--g~~~~v~t---~~G~--~i~a~~VI~At~~~~ 330 (342)
.+...+...+.+.+++|+.++.|+++..+++ |.+++|.. .+|+ ++.|+.||+||+.+.
T Consensus 127 ~~~r~l~~~l~~~~~~i~~~~~v~~Ll~d~~~~GrV~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 191 (614)
T TIGR02061 127 SYKPIVAEAAKNALGDIFERIFIVKLLLDKNTPNRIAGAVGFNVRANEVHVFKAKTVIVAAGGAV 191 (614)
T ss_pred hHHHHHHHHHHhCCCeEEcccEEEEEEecCCCCCeEEEEEEEEeCCCcEEEEECCEEEECCCccc
Confidence 3344455556666789999999999987542 67778764 3453 689999999999985
No 229
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=98.85 E-value=3.8e-08 Score=92.86 Aligned_cols=40 Identities=35% Similarity=0.521 Sum_probs=34.5
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCccee
Q 019346 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIA 97 (342)
Q Consensus 58 ~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~~gG~~~ 97 (342)
.+|+|||||++||++|..|.+.|++|+++|+++.+||...
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~ 41 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWR 41 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGC
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCe
Confidence 5899999999999999999999999999999999999764
No 230
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=98.85 E-value=1.4e-07 Score=88.61 Aligned_cols=37 Identities=32% Similarity=0.356 Sum_probs=35.4
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCc
Q 019346 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGG 94 (342)
Q Consensus 58 ~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~~gG 94 (342)
+||+|||+|++|+.+|+.|++.|++|+|+|+....||
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~~ 37 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADSF 37 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccCC
Confidence 6999999999999999999999999999999988886
No 231
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=98.84 E-value=5.2e-08 Score=82.61 Aligned_cols=59 Identities=19% Similarity=0.216 Sum_probs=46.6
Q ss_pred cccchHHHHHHHhcCcEEEecceeeEEEEcCC---CCEEEEEecCCcEEEcCEEEEccCHHh
Q 019346 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDD---GTVKNFLLTNGNVIDGDAYLISSSFSY 330 (342)
Q Consensus 272 ~~l~~~l~~~l~~~Gv~i~~~t~V~~I~~~~~---g~~~~v~t~~G~~i~a~~VI~At~~~~ 330 (342)
..++..+.+..+..|.++.+|-+|..|....+ ++.+.|.-..|++++++.||-|++..+
T Consensus 196 ~~v~ls~~edF~~~gg~i~~n~~l~g~~~n~~~~~~Ypivv~ngk~ee~r~~~~vtc~gl~s 257 (453)
T KOG2665|consen 196 GSVTLSFGEDFDFMGGRIYTNFRLQGIAQNKEATFSYPIVVLNGKGEEKRTKNVVTCAGLQS 257 (453)
T ss_pred HHHHHHHHHHHHHhcccccccceeccchhccCCCCCCceEEecCccceeEEeEEEEeccccH
Confidence 35677788888899999999999999986533 344445555678999999999998775
No 232
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=98.83 E-value=8.6e-09 Score=93.78 Aligned_cols=55 Identities=29% Similarity=0.398 Sum_probs=42.2
Q ss_pred ccchHHHHHHHhcCcEEEecceeeEEEEcCCCCEEEEEecCCcEEEcCEEEEccCHHh
Q 019346 273 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYLISSSFSY 330 (342)
Q Consensus 273 ~l~~~l~~~l~~~Gv~i~~~t~V~~I~~~~~g~~~~v~t~~G~~i~a~~VI~At~~~~ 330 (342)
.|-+.+.+.+. .+..+.+++.|++|+.++++. .|++.+|++++|+.||-|.+...
T Consensus 88 ~f~~~l~~~~~-~~~~~~~~~~V~~i~~~~~~~--~v~~~~g~~i~a~~VvDa~g~~~ 142 (374)
T PF05834_consen 88 DFYEFLLERAA-AGGVIRLNARVTSIEETGDGV--LVVLADGRTIRARVVVDARGPSS 142 (374)
T ss_pred HHHHHHHHHhh-hCCeEEEccEEEEEEecCceE--EEEECCCCEEEeeEEEECCCccc
Confidence 45556777777 445677899999998754533 58889998999999999998553
No 233
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=98.83 E-value=2.7e-07 Score=86.69 Aligned_cols=43 Identities=42% Similarity=0.622 Sum_probs=39.2
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCccee
Q 019346 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIA 97 (342)
Q Consensus 55 ~~~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~~gG~~~ 97 (342)
...++|+|||||++|+++|..|++.|++|+|+|+.+.+||...
T Consensus 141 ~~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~ 183 (471)
T PRK12810 141 RTGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLR 183 (471)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceee
Confidence 4567999999999999999999999999999999999998653
No 234
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.82 E-value=3.2e-08 Score=90.63 Aligned_cols=43 Identities=35% Similarity=0.526 Sum_probs=39.7
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCcceee
Q 019346 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (342)
Q Consensus 56 ~~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~~gG~~~~ 98 (342)
...+|+|||||++||++|..|.+.|+.|+++||.+.+||...-
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y 47 (448)
T KOG1399|consen 5 MSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKY 47 (448)
T ss_pred CCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEee
Confidence 4679999999999999999999999999999999999997654
No 235
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.81 E-value=4.1e-08 Score=90.22 Aligned_cols=55 Identities=15% Similarity=0.213 Sum_probs=43.6
Q ss_pred ccchHHHHHHHhcCcEEEecceeeEEEEcCCCCEEEEEecCCcEEEcCEEEEccCHHh
Q 019346 273 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYLISSSFSY 330 (342)
Q Consensus 273 ~l~~~l~~~l~~~Gv~i~~~t~V~~I~~~~~g~~~~v~t~~G~~i~a~~VI~At~~~~ 330 (342)
.+...+.+.++++|+++++++.|++|+. ++ ...|++.+|+++.||.||+|++...
T Consensus 187 ~~~~~l~~~l~~~GV~i~~~~~V~~i~~--~~-~~~v~l~~g~~i~aD~Vv~a~G~~p 241 (396)
T PRK09754 187 PVQRYLLQRHQQAGVRILLNNAIEHVVD--GE-KVELTLQSGETLQADVVIYGIGISA 241 (396)
T ss_pred HHHHHHHHHHHHCCCEEEeCCeeEEEEc--CC-EEEEEECCCCEEECCEEEECCCCCh
Confidence 3455677778889999999999999975 22 2357788898999999999997643
No 236
>PLN02546 glutathione reductase
Probab=98.81 E-value=1.5e-07 Score=89.45 Aligned_cols=44 Identities=18% Similarity=0.365 Sum_probs=37.1
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCceEEEecC---------CCCCcceee
Q 019346 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR---------DVLGGKIAA 98 (342)
Q Consensus 55 ~~~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~---------~~~gG~~~~ 98 (342)
..+|||+|||||++|+.||..+++.|.+|+|+|+. ..+||.|-.
T Consensus 77 ~~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~~~~~~~~~~~GGtC~n 129 (558)
T PLN02546 77 HYDFDLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSDTLGGVGGTCVL 129 (558)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCccCcccC
Confidence 34689999999999999999999999999999962 446666544
No 237
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=98.81 E-value=7.2e-09 Score=94.78 Aligned_cols=62 Identities=19% Similarity=0.380 Sum_probs=53.2
Q ss_pred CCcccchHHHHHHHhcCcEEEecceeeEEEEcCCCCEEEEEecCCcEEEcCEEEEccCHHhhhcC
Q 019346 270 PPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYLISSSFSYLKTG 334 (342)
Q Consensus 270 ~~~~l~~~l~~~l~~~Gv~i~~~t~V~~I~~~~~g~~~~v~t~~G~~i~a~~VI~At~~~~~~~L 334 (342)
+|.+++..|.+.+.+ |++|+++++|++|+.++++ +.|+|.+|.++.||+||+|+++|+..++
T Consensus 133 dp~~~~~~l~~~~~~-G~~i~~~~~V~~i~~~~~~--~~v~t~~g~~~~a~~vV~a~G~~~~~l~ 194 (381)
T TIGR03197 133 SPPQLCRALLAHAGI-RLTLHFNTEITSLERDGEG--WQLLDANGEVIAASVVVLANGAQAGQLA 194 (381)
T ss_pred ChHHHHHHHHhccCC-CcEEEeCCEEEEEEEcCCe--EEEEeCCCCEEEcCEEEEcCCccccccc
Confidence 488999999999999 9999999999999874443 4688899966999999999999986544
No 238
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=98.80 E-value=6.6e-08 Score=90.75 Aligned_cols=57 Identities=21% Similarity=0.357 Sum_probs=45.7
Q ss_pred cccchHHHHHHHhcCcEEEecceeeEEEEcCCCCEEEEEecCCcEEEcCEEEEccCHH
Q 019346 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYLISSSFS 329 (342)
Q Consensus 272 ~~l~~~l~~~l~~~Gv~i~~~t~V~~I~~~~~g~~~~v~t~~G~~i~a~~VI~At~~~ 329 (342)
..+...+.+.++++|+++++++.|++|..++++. ..|++.+|+++.+|.||+|++..
T Consensus 231 ~~~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~~~-~~v~~~~g~~i~~D~vl~a~G~~ 287 (486)
T TIGR01423 231 STLRKELTKQLRANGINIMTNENPAKVTLNADGS-KHVTFESGKTLDVDVVMMAIGRV 287 (486)
T ss_pred HHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCce-EEEEEcCCCEEEcCEEEEeeCCC
Confidence 4566788888999999999999999998644443 34666777789999999999644
No 239
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=98.80 E-value=2.3e-07 Score=86.84 Aligned_cols=43 Identities=33% Similarity=0.545 Sum_probs=39.4
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCccee
Q 019346 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIA 97 (342)
Q Consensus 55 ~~~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~~gG~~~ 97 (342)
+...+|+|||||++|+++|+.|++.|++|+|+|+.+.+||...
T Consensus 139 ~~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~ 181 (467)
T TIGR01318 139 PTGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLT 181 (467)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceee
Confidence 3567999999999999999999999999999999999998764
No 240
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.80 E-value=1.5e-07 Score=91.45 Aligned_cols=43 Identities=35% Similarity=0.534 Sum_probs=39.5
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCccee
Q 019346 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIA 97 (342)
Q Consensus 55 ~~~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~~gG~~~ 97 (342)
+...+|+|||||++|+++|+.|++.|++|+|+|+.+.+||.+.
T Consensus 308 ~~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~ 350 (639)
T PRK12809 308 PRSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLT 350 (639)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeee
Confidence 3568999999999999999999999999999999999998753
No 241
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.75 E-value=1.6e-07 Score=65.40 Aligned_cols=35 Identities=37% Similarity=0.586 Sum_probs=32.0
Q ss_pred eEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCC
Q 019346 59 KVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLG 93 (342)
Q Consensus 59 dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~~g 93 (342)
+|+|||||+.|+-+|..|++.|.+|+|+++.+.+.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~ 35 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL 35 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh
Confidence 58999999999999999999999999999987643
No 242
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.74 E-value=2.4e-09 Score=96.65 Aligned_cols=72 Identities=15% Similarity=0.131 Sum_probs=55.7
Q ss_pred CcceeecCCCCCcccchHHHHHHHhcCcEEEecceeeEEEEcCCCCEEEEEecC---Cc--EEEcCEEEEccCHHhh
Q 019346 260 GSKMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTN---GN--VIDGDAYLISSSFSYL 331 (342)
Q Consensus 260 g~~~~~~~g~~~~~l~~~l~~~l~~~Gv~i~~~t~V~~I~~~~~g~~~~v~t~~---G~--~i~a~~VI~At~~~~~ 331 (342)
|+.+.|-+..+..++...++=.+..+|..+....+|.++..++++.+.++...| |+ +|+|+.||.||++.+=
T Consensus 212 Ga~VYyDGQ~nDaRmnl~vAlTA~r~GA~v~Nh~ev~~Llkd~~~kv~Ga~~rD~iTG~e~~I~Ak~VVNATGpfsD 288 (680)
T KOG0042|consen 212 GAMVYYDGQHNDARMNLAVALTAARNGATVLNHVEVVSLLKDKDGKVIGARARDHITGKEYEIRAKVVVNATGPFSD 288 (680)
T ss_pred eEEEEecCCCchHHHHHHHHHHHHhcchhhhhHHHHHHHhhCCCCceeeeEEEEeecCcEEEEEEEEEEeCCCCccH
Confidence 444444444456788888888888999999999999999988888776776654 33 7999999999998853
No 243
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.74 E-value=6.5e-08 Score=97.46 Aligned_cols=37 Identities=35% Similarity=0.429 Sum_probs=34.3
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCceEEEecCCC
Q 019346 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (342)
Q Consensus 55 ~~~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~ 91 (342)
..++||+|||||.+||+||..+++.|.+|+|+||...
T Consensus 11 ~~~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~ 47 (897)
T PRK13800 11 RLDCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV 47 (897)
T ss_pred eeecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence 3568999999999999999999999999999999875
No 244
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.73 E-value=6.2e-07 Score=84.13 Aligned_cols=40 Identities=30% Similarity=0.439 Sum_probs=36.2
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCcceee
Q 019346 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (342)
Q Consensus 58 ~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~~gG~~~~ 98 (342)
.||+|||||++|+.||..+++.|.+|+|+|+. ..||.+..
T Consensus 2 ~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~-~~gG~c~~ 41 (466)
T PRK07845 2 TRIVIIGGGPGGYEAALVAAQLGADVTVIERD-GLGGAAVL 41 (466)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCCcccc
Confidence 48999999999999999999999999999986 47887755
No 245
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.72 E-value=1.8e-07 Score=88.46 Aligned_cols=44 Identities=36% Similarity=0.396 Sum_probs=40.1
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCcceee
Q 019346 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (342)
Q Consensus 55 ~~~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~~gG~~~~ 98 (342)
..++||+|||||.+||.||..+++.|.+|+|+||....+|.+..
T Consensus 4 ~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~rg~t~~ 47 (562)
T COG1053 4 IHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRGHTVA 47 (562)
T ss_pred cccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCCCchhh
Confidence 46789999999999999999999999999999999988876654
No 246
>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=1.6e-07 Score=82.32 Aligned_cols=254 Identities=17% Similarity=0.156 Sum_probs=127.5
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCcceeeeccC------C--------------CceeecceeEec
Q 019346 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDG------D--------------GDWYETGLHIFF 115 (342)
Q Consensus 56 ~~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~~gG~~~~~~~~------~--------------~~~~~~G~~~~~ 115 (342)
+++||+|+|-|+.-+..+..|+..|.+|+.+|+++..||..++.... . .+.+|.-+..+.
T Consensus 3 eeyDvivlGTgl~ecilS~~Ls~~gkkVLhiDrN~yYG~~sasltl~ql~~~f~~~~~~~~~~~~~~rd~nvDLiPK~lm 82 (440)
T KOG1439|consen 3 EEYDVIVLGTGLTECILSGALSVDGKKVLHIDRNDYYGGESASLTLEQLYKKFKKVSEKPPEKLGRDRDWNVDLIPKFLM 82 (440)
T ss_pred CceeEEEEcCCchhheeeeeeeecCcEEEEEeCCCCCCccccceeHHHHHHHhccccccCccccccccccchhhchHhhh
Confidence 34999999999999999999999999999999999999987664310 0 001111111111
Q ss_pred CCcccHHHHHHHcCCCccccccccceeeeccCCCCCccccCCCCCCCCchhhHHHHHhcCCCCChhHHH---Hhhhccch
Q 019346 116 GAYPNIQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKV---KFAIGLLP 192 (342)
Q Consensus 116 ~~~~~~~~l~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 192 (342)
....+.+++.+.++...+.+......+..... .+.. .+....+.+. .+.+...++- +++.....
T Consensus 83 -An~~Lvk~Li~T~V~~YL~fk~i~gsfv~~~~--k~~K--------VP~t~~Ea~~--s~lmgl~eKrr~~kFl~~V~n 149 (440)
T KOG1439|consen 83 -ANGELVKILIHTGVTRYLEFKSISGSFVYKKG--KIYK--------VPATEAEALT--SPLMGLFEKRRVMKFLKFVLN 149 (440)
T ss_pred -ccchHHHHHHHhchhhheEEEeecceEEEECC--eEEE--------CCCCHHHHhc--CCccchhHHHHHHHHHHHHhh
Confidence 11224455556666655544433222222111 1111 0111111111 1111111111 11111111
Q ss_pred hhhcCchhhhh--ccCCCHHHHHHHcCCChhHHHHHHHHHHhhccC-CCC--CcchHHHHHH----HHHHhhhhccCcce
Q 019346 193 AIIGGQAYVEA--QDGLTVQEWMRKQGVPDRVTTEVFIAMSKALNF-INP--DELSMQCILI----ALNRFLQEKHGSKM 263 (342)
Q Consensus 193 ~~~~~~~~~~~--~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~----~~~~~~~~~~g~~~ 263 (342)
........+.. ....++.+++.+.+......... ..++.. .+. -+.+....+. ++..+... .....
T Consensus 150 ~~e~~~~~~~~~~~~k~tm~~~~~~~~l~~~~~~f~----gh~~al~~dd~~ld~p~~~~~~ri~~Y~~S~~~y-g~~~y 224 (440)
T KOG1439|consen 150 YDEEDPKTWQGYDLSKDTMREFLGKFGLLEGTIDFI----GHAIALLCDDSYLDQPAKETLERILLYVRSFARY-GKSPY 224 (440)
T ss_pred hhhhccccccccccccchHHHHHHHhcccccceeee----eeeeEEEecchhccCccHHHHHHHHHHHHHHhhc-CCCcc
Confidence 00000000011 12236778887776544322110 001100 111 1122222222 22332222 22234
Q ss_pred eecCCCCCcccchHHHHHHHhcCcEEEecceeeEEEEcCCCCEEEEEecCCcEEEcCEEEEccCHHh
Q 019346 264 AFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYLISSSFSY 330 (342)
Q Consensus 264 ~~~~g~~~~~l~~~l~~~l~~~Gv~i~~~t~V~~I~~~~~g~~~~v~t~~G~~i~a~~VI~At~~~~ 330 (342)
.++.+| +..|.+++++...-.|+++++|.++.+|..+.++++.+|...++ ..++++||. -|.+.
T Consensus 225 lyP~yG-lgEL~QgFaRlsAvyGgTYMLn~pi~ei~~~~~gk~igvk~~~~-v~~~k~vi~-dpSY~ 288 (440)
T KOG1439|consen 225 LYPLYG-LGELPQGFARLSAVYGGTYMLNKPIDEINETKNGKVIGVKSGGE-VAKCKKVIC-DPSYF 288 (440)
T ss_pred eecccC-cchhhHHHHHHhhccCceeecCCceeeeeccCCccEEEEecCCc-eeecceEEe-cCccc
Confidence 555555 67999999998888899999999999999866788866665555 777776554 44443
No 247
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=98.71 E-value=4.5e-08 Score=93.87 Aligned_cols=36 Identities=31% Similarity=0.435 Sum_probs=33.7
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCceEEEecCC
Q 019346 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (342)
Q Consensus 55 ~~~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~ 90 (342)
.+..+|+|||||++||++|..|++.|++|+|+|+..
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~ 114 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL 114 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence 566899999999999999999999999999999975
No 248
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=98.70 E-value=1.5e-07 Score=83.11 Aligned_cols=39 Identities=41% Similarity=0.574 Sum_probs=35.2
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCcc
Q 019346 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGK 95 (342)
Q Consensus 57 ~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~~gG~ 95 (342)
+.+|+|||||++|+++|..|.+.|.+|+|+|++..+-|.
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~R~~ 40 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESREDPRGE 40 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeeccccccC
Confidence 458999999999999999999999999999998776554
No 249
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=98.68 E-value=3e-07 Score=87.76 Aligned_cols=50 Identities=14% Similarity=0.119 Sum_probs=37.9
Q ss_pred hcCcEEEecceeeEEEEcCCCCEEEEEecCC-c---EEEcCEEEEccCH-HhhhcC
Q 019346 284 SLGGEVRLNSRVQKIELNDDGTVKNFLLTNG-N---VIDGDAYLISSSF-SYLKTG 334 (342)
Q Consensus 284 ~~Gv~i~~~t~V~~I~~~~~g~~~~v~t~~G-~---~i~a~~VI~At~~-~~~~~L 334 (342)
+.|++|++++.|++|..+ ++++++|++.++ + .+.++.||+|+++ .+..+|
T Consensus 206 r~nl~i~~~~~V~rI~~~-~~ra~GV~~~~~~~~~~~~~ak~VIlaAGai~SP~LL 260 (532)
T TIGR01810 206 RPNLEVQTRAFVTKINFE-GNRATGVEFKKGGRKEHTEANKEVILSAGAINSPQLL 260 (532)
T ss_pred CCCeEEEeCCEEEEEEec-CCeEEEEEEEeCCcEEEEEEeeeEEEccCCCCCHHHH
Confidence 457999999999999984 667778877543 2 3589999999998 444444
No 250
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=98.65 E-value=2.9e-06 Score=81.58 Aligned_cols=43 Identities=37% Similarity=0.522 Sum_probs=39.2
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCccee
Q 019346 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIA 97 (342)
Q Consensus 55 ~~~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~~gG~~~ 97 (342)
....+|+|||+|++||++|+.|++.|++|+|+|+.+.+||...
T Consensus 135 ~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~ 177 (564)
T PRK12771 135 DTGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMR 177 (564)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeee
Confidence 4566999999999999999999999999999999999998653
No 251
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=98.65 E-value=1.8e-07 Score=93.07 Aligned_cols=57 Identities=16% Similarity=0.170 Sum_probs=46.0
Q ss_pred cchHHHHHHHhcCcEEEecceeeEEEEcCCCCEEEEEecCCcEEEcCEEEEccCHHh
Q 019346 274 LCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYLISSSFSY 330 (342)
Q Consensus 274 l~~~l~~~l~~~Gv~i~~~t~V~~I~~~~~g~~~~v~t~~G~~i~a~~VI~At~~~~ 330 (342)
....+.+.++++|+++++++.|++|..++++....|++.+|+++.+|.||+|++...
T Consensus 189 ~~~~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D~Vv~A~G~rP 245 (847)
T PRK14989 189 GGEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFIVFSTGIRP 245 (847)
T ss_pred HHHHHHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEECCCCEEEcCEEEECCCccc
Confidence 345677888899999999999999976433445568888998999999999997553
No 252
>PRK02106 choline dehydrogenase; Validated
Probab=98.63 E-value=4.9e-07 Score=86.85 Aligned_cols=36 Identities=36% Similarity=0.406 Sum_probs=33.4
Q ss_pred CCCeEEEECCCHHHHHHHHHHHH-cCCceEEEecCCC
Q 019346 56 KPLKVVIAGAGLAGLSTAKYLAD-AGHKPLLLEARDV 91 (342)
Q Consensus 56 ~~~dv~IiG~G~~G~~~A~~l~~-~g~~v~vle~~~~ 91 (342)
.++|+||||||.+|+.+|..|++ .|++|+|||+.+.
T Consensus 4 ~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~~ 40 (560)
T PRK02106 4 MEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGGP 40 (560)
T ss_pred CcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCCc
Confidence 46899999999999999999999 7999999999854
No 253
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=98.62 E-value=3.9e-07 Score=79.43 Aligned_cols=43 Identities=33% Similarity=0.441 Sum_probs=41.1
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCcceee
Q 019346 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (342)
Q Consensus 56 ~~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~~gG~~~~ 98 (342)
.++||+|||+|+.|..||...++.|++.+.+|++..+||.+-.
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LGGTcLn 80 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGGTCLN 80 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCccCceeee
Confidence 6899999999999999999999999999999999999998865
No 254
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=98.62 E-value=2e-07 Score=92.60 Aligned_cols=54 Identities=9% Similarity=0.155 Sum_probs=44.3
Q ss_pred cchHHHHHHHhcCcEEEecceeeEEEEcCCCCEEEEEecCCcEEEcCEEEEccCHH
Q 019346 274 LCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYLISSSFS 329 (342)
Q Consensus 274 l~~~l~~~l~~~Gv~i~~~t~V~~I~~~~~g~~~~v~t~~G~~i~a~~VI~At~~~ 329 (342)
+...+.+.++++|+++++++.|++|.. ++....|++.+|+++.+|.||+|++..
T Consensus 184 ~~~~l~~~l~~~GV~v~~~~~v~~i~~--~~~~~~v~~~dG~~i~~D~Vi~a~G~~ 237 (785)
T TIGR02374 184 AGRLLQRELEQKGLTFLLEKDTVEIVG--ATKADRIRFKDGSSLEADLIVMAAGIR 237 (785)
T ss_pred HHHHHHHHHHHcCCEEEeCCceEEEEc--CCceEEEEECCCCEEEcCEEEECCCCC
Confidence 345567788889999999999999974 344557888899899999999999754
No 255
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.61 E-value=9.5e-08 Score=90.82 Aligned_cols=64 Identities=17% Similarity=0.203 Sum_probs=52.1
Q ss_pred CCcccchHHHHHHHhcCcEEEecceeeEEEEcCCCCEEEEEec---CC--cEEEcCEEEEccCHHhhhcC
Q 019346 270 PPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT---NG--NVIDGDAYLISSSFSYLKTG 334 (342)
Q Consensus 270 ~~~~l~~~l~~~l~~~Gv~i~~~t~V~~I~~~~~g~~~~v~t~---~G--~~i~a~~VI~At~~~~~~~L 334 (342)
+|.+++..+.+.+.++|++|+++++|++|..+ ++.+++|++. +| .++.|++||+|+++|+...+
T Consensus 126 dp~~l~~al~~~A~~~Ga~i~~~t~V~~i~~~-~~~v~gv~v~~~~~g~~~~i~a~~VVnAaG~wa~~l~ 194 (516)
T TIGR03377 126 DPFRLVAANVLDAQEHGARIFTYTKVTGLIRE-GGRVTGVKVEDHKTGEEERIEAQVVINAAGIWAGRIA 194 (516)
T ss_pred CHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEE-CCEEEEEEEEEcCCCcEEEEEcCEEEECCCcchHHHH
Confidence 48899999999999999999999999999874 4445556553 34 37999999999999976543
No 256
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.59 E-value=9.6e-07 Score=82.54 Aligned_cols=55 Identities=16% Similarity=0.294 Sum_probs=43.1
Q ss_pred cccchHHHHHHHhcCcEEEecceeeEEEEcCCCCEEEEEecCCcEEEcCEEEEccCHH
Q 019346 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYLISSSFS 329 (342)
Q Consensus 272 ~~l~~~l~~~l~~~Gv~i~~~t~V~~I~~~~~g~~~~v~t~~G~~i~a~~VI~At~~~ 329 (342)
..+...+.+.++++|++++++++|++|.. ++....+.++++ ++.||.||+|++..
T Consensus 191 ~~~~~~l~~~l~~~gI~v~~~~~v~~i~~--~~~~~~v~~~~~-~i~~d~vi~a~G~~ 245 (444)
T PRK09564 191 KEITDVMEEELRENGVELHLNEFVKSLIG--EDKVEGVVTDKG-EYEADVVIVATGVK 245 (444)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEec--CCcEEEEEeCCC-EEEcCEEEECcCCC
Confidence 35667777888889999999999999964 333445666666 89999999999865
No 257
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=2.9e-06 Score=73.74 Aligned_cols=250 Identities=16% Similarity=0.182 Sum_probs=122.2
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCcceeeeccC-------------C------CceeecceeEec
Q 019346 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDG-------------D------GDWYETGLHIFF 115 (342)
Q Consensus 55 ~~~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~~gG~~~~~~~~-------------~------~~~~~~G~~~~~ 115 (342)
...+||+|+|.|+.-...+..|+..|.+|+++|+++..|+..++.... . .+.+|.-+..+.
T Consensus 4 ~~~yDvii~GTgl~esils~~Ls~~~k~VlhiD~Nd~YG~~~asltl~ql~~~~~~~~~~p~k~~~drd~~iDL~PK~l~ 83 (434)
T COG5044 4 ETLYDVIILGTGLRESILSAALSWDGKNVLHIDKNDYYGSTSASLTLTQLEKYFDECEKRPSKGGGDRDLNIDLIPKFLF 83 (434)
T ss_pred cccccEEEecccHHHHHHHHHhhhcCceEEEEeCCCccCccccceeHHHHHHHhhhhhccccccccccccchhhchhhhc
Confidence 347999999999999999999999999999999999999876653310 0 011122222222
Q ss_pred CCcccHHHHHHHcCCCccccccccceeeeccCCCCCccccCCCCCCCCchhhHHHHHhcCCCCChhHHHHhh--hccchh
Q 019346 116 GAYPNIQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFA--IGLLPA 193 (342)
Q Consensus 116 ~~~~~~~~l~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 193 (342)
. ...+..++.+.|+...+.+..-...+..... .+... +.+..+ ....+.+...++-+.. .+....
T Consensus 84 A-~s~l~~iLi~t~v~~YLefk~i~~~~~~~~~--k~~kV--------P~ne~e--i~~s~~lsL~eKr~vmrFl~~V~n 150 (434)
T COG5044 84 A-NSELLKILIETGVTEYLEFKQISGSFLYRPG--KIYKV--------PYNEAE--IFTSPLLSLFEKRRVMRFLKWVSN 150 (434)
T ss_pred c-cchHHHHHHHhChHhheeeeeccccEEecCC--cEEEC--------CccHHh--hhcCCCcchhhHHHHHHHHHHHHh
Confidence 1 2234556666777665554443332222111 11100 001111 1111111111111110 000000
Q ss_pred hhcCchhhhhc--cCCCHHHHHHHcCCChhHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHhhhh--ccC-cceeecCC
Q 019346 194 IIGGQAYVEAQ--DGLTVQEWMRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQE--KHG-SKMAFLDG 268 (342)
Q Consensus 194 ~~~~~~~~~~~--~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g-~~~~~~~g 268 (342)
+........+. +..+++...+..++...........++... + -+.+....+..+..++.. .+| ....++..
T Consensus 151 ~~~~~~~~~~~~e~k~~~~~~~ekf~L~~~~~e~i~~~i~l~l---d-l~~p~re~~erIl~Y~~Sf~~yg~~pyLyp~Y 226 (434)
T COG5044 151 YAEQKSTLQELYESKDTMEFLFEKFGLSGATEEFIGHGIALSL---D-LDIPAREALERILRYMRSFGDYGKSPYLYPRY 226 (434)
T ss_pred HHhhhhhchhhhhcccHHHHHHHHHccCcchhhhhhhhhhhhc---c-ccCCchHHHHHHHHHHHhhcccCCCcceeecc
Confidence 00000000011 112233333444544333222222222111 1 122233333333333221 122 33445555
Q ss_pred CCCcccchHHHHHHHhcCcEEEecceeeEEEEcCCCCEEEEEecCCcEEEcCEEEEc
Q 019346 269 NPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYLIS 325 (342)
Q Consensus 269 ~~~~~l~~~l~~~l~~~Gv~i~~~t~V~~I~~~~~g~~~~v~t~~G~~i~a~~VI~A 325 (342)
| +.++.+++++...-.|+++.+|+++.+|....+ +.+|..... ++.|.+||..
T Consensus 227 G-l~El~QGFaRssav~GgtymLn~~i~ein~tk~--v~~v~~~~~-~~ka~KiI~~ 279 (434)
T COG5044 227 G-LGELSQGFARSSAVYGGTYMLNQAIDEINETKD--VETVDKGSL-TQKAGKIISS 279 (434)
T ss_pred C-chhhhHHHHHhhhccCceeecCcchhhhccccc--eeeeecCcc-eeecCcccCC
Confidence 5 789999999998888999999999999976322 334443333 8888888764
No 258
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=98.58 E-value=9e-07 Score=79.12 Aligned_cols=58 Identities=34% Similarity=0.540 Sum_probs=50.8
Q ss_pred cccchHHHHHHHhcCcEEEecceeeEEEEcCCCCEEEEEecCCcEEEcCEEEEccCHHh
Q 019346 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYLISSSFSY 330 (342)
Q Consensus 272 ~~l~~~l~~~l~~~Gv~i~~~t~V~~I~~~~~g~~~~v~t~~G~~i~a~~VI~At~~~~ 330 (342)
.+++..|.+.+++.|++|+++|.|..|+. +++.+..|++.+|+++.+|+||+|.+-..
T Consensus 173 ~~vvkni~~~l~~~G~ei~f~t~VeDi~~-~~~~~~~v~~~~g~~i~~~~vvlA~Grsg 230 (486)
T COG2509 173 PKVVKNIREYLESLGGEIRFNTEVEDIEI-EDNEVLGVKLTKGEEIEADYVVLAPGRSG 230 (486)
T ss_pred HHHHHHHHHHHHhcCcEEEeeeEEEEEEe-cCCceEEEEccCCcEEecCEEEEccCcch
Confidence 46889999999999999999999999998 45556689999999999999999996544
No 259
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=98.56 E-value=7.2e-07 Score=82.70 Aligned_cols=52 Identities=19% Similarity=0.274 Sum_probs=42.6
Q ss_pred cccchHHHHHHHhcCcEEEecceeeEEEEcCCCCEEEEEecCCcEEEcCEEEEccCHH
Q 019346 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYLISSSFS 329 (342)
Q Consensus 272 ~~l~~~l~~~l~~~Gv~i~~~t~V~~I~~~~~g~~~~v~t~~G~~i~a~~VI~At~~~ 329 (342)
..+.+.+.+.++++|++++++++|++|.. + .|++.+|+++.+|.||+|++..
T Consensus 228 ~~~~~~~~~~L~~~gV~v~~~~~v~~v~~--~----~v~~~~g~~i~~d~vi~~~G~~ 279 (424)
T PTZ00318 228 QALRKYGQRRLRRLGVDIRTKTAVKEVLD--K----EVVLKDGEVIPTGLVVWSTGVG 279 (424)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeEEEEeC--C----EEEECCCCEEEccEEEEccCCC
Confidence 35667778889999999999999999963 2 2667889899999999998643
No 260
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=98.55 E-value=3.1e-06 Score=79.37 Aligned_cols=40 Identities=33% Similarity=0.454 Sum_probs=35.6
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCcceee
Q 019346 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (342)
Q Consensus 58 ~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~~gG~~~~ 98 (342)
++|+|||||++|++||..|++.|.+|+|+|+. ..||.|-.
T Consensus 1 ~~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~-~~GG~c~n 40 (458)
T PRK06912 1 SKLVVIGGGPAGYVAAITAAQNGKNVTLIDEA-DLGGTCLN 40 (458)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECC-cccccCCC
Confidence 38999999999999999999999999999986 56776654
No 261
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.55 E-value=2.7e-07 Score=84.30 Aligned_cols=55 Identities=22% Similarity=0.367 Sum_probs=44.6
Q ss_pred ccchHHHHHHHhcCcEEEecceeeEEEEcCCCCEEEEEecCCcEEEcCEEEEccCHH
Q 019346 273 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYLISSSFS 329 (342)
Q Consensus 273 ~l~~~l~~~l~~~Gv~i~~~t~V~~I~~~~~g~~~~v~t~~G~~i~a~~VI~At~~~ 329 (342)
.+...+.+.+++.|++++++++|++|..++++ ..|++.+|+++.||.||+|++..
T Consensus 184 ~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~--~~v~~~~g~~i~~D~vI~a~G~~ 238 (377)
T PRK04965 184 EVSSRLQHRLTEMGVHLLLKSQLQGLEKTDSG--IRATLDSGRSIEVDAVIAAAGLR 238 (377)
T ss_pred HHHHHHHHHHHhCCCEEEECCeEEEEEccCCE--EEEEEcCCcEEECCEEEECcCCC
Confidence 45566778888899999999999999864333 35778889899999999999764
No 262
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.54 E-value=1.6e-06 Score=80.74 Aligned_cols=51 Identities=18% Similarity=0.248 Sum_probs=41.6
Q ss_pred ccchHHHHHHHhcCcEEEecceeeEEEEcCCCCEEEEEecCCcEEEcCEEEEccCHH
Q 019346 273 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYLISSSFS 329 (342)
Q Consensus 273 ~l~~~l~~~l~~~Gv~i~~~t~V~~I~~~~~g~~~~v~t~~G~~i~a~~VI~At~~~ 329 (342)
.+...+.+.++++|+++++++.|++|+. . .|++.+|+++.+|.||+|++..
T Consensus 190 ~~~~~l~~~l~~~gI~i~~~~~v~~i~~--~----~v~~~~g~~~~~D~vl~a~G~~ 240 (438)
T PRK13512 190 DMNQPILDELDKREIPYRLNEEIDAING--N----EVTFKSGKVEHYDMIIEGVGTH 240 (438)
T ss_pred HHHHHHHHHHHhcCCEEEECCeEEEEeC--C----EEEECCCCEEEeCEEEECcCCC
Confidence 4566778888899999999999999962 2 3666778789999999999754
No 263
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=98.54 E-value=8.6e-07 Score=80.17 Aligned_cols=58 Identities=10% Similarity=0.144 Sum_probs=44.0
Q ss_pred cccchHHHHHHHh-cCcEEEecceeeEEEEcCCCCEEEEEecCC----cEEEcCEEEEccCHH
Q 019346 272 ERLCLPIVEHIQS-LGGEVRLNSRVQKIELNDDGTVKNFLLTNG----NVIDGDAYLISSSFS 329 (342)
Q Consensus 272 ~~l~~~l~~~l~~-~Gv~i~~~t~V~~I~~~~~g~~~~v~t~~G----~~i~a~~VI~At~~~ 329 (342)
..+++.|.+.+++ .++++..+..+.+|..+++..+.+|.+.+. .++.|+.||+||+..
T Consensus 133 ~~I~~~L~~~v~~~p~I~v~e~~~a~~li~~~~~~~~Gv~~~~~~~~~~~~~a~~vVLATGG~ 195 (518)
T COG0029 133 KEIMTALLKKVRNRPNITVLEGAEALDLIIEDGIGVAGVLVLNRNGELGTFRAKAVVLATGGL 195 (518)
T ss_pred HHHHHHHHHHHhcCCCcEEEecchhhhhhhcCCceEeEEEEecCCCeEEEEecCeEEEecCCC
Confidence 4677888888776 489999999999998755534446766432 489999999999764
No 264
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=98.52 E-value=3.9e-06 Score=78.99 Aligned_cols=33 Identities=36% Similarity=0.550 Sum_probs=31.4
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCceEEEecC
Q 019346 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (342)
Q Consensus 57 ~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~ 89 (342)
++|++|||||++|+.||..+++.|.+|+++|+.
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~ 34 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFV 34 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence 589999999999999999999999999999974
No 265
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=98.50 E-value=9e-07 Score=82.70 Aligned_cols=41 Identities=17% Similarity=0.229 Sum_probs=34.0
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCcceeeec
Q 019346 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWK 100 (342)
Q Consensus 57 ~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~~gG~~~~~~ 100 (342)
++|++|||+|++|..||.. ..|.+|+|+|+ +..||.|-...
T Consensus 2 ~yD~vvIG~G~~g~~aa~~--~~g~~V~lie~-~~~GGtC~n~G 42 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPR--FADKRIAIVEK-GTFGGTCLNVG 42 (452)
T ss_pred CcCEEEECCCHHHHHHHHH--HCCCeEEEEeC-CCCCCeeeccC
Confidence 5899999999999998654 46999999998 56788876633
No 266
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=98.47 E-value=1.9e-07 Score=81.33 Aligned_cols=37 Identities=35% Similarity=0.503 Sum_probs=34.3
Q ss_pred CCCCCCeEEEECCCHHHHHHHHHHHHcCCceEEEecC
Q 019346 53 RPSKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (342)
Q Consensus 53 ~~~~~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~ 89 (342)
..+..+||+|||||++|.+.|+.|+|.|.+|.|+|+.
T Consensus 41 ~~~~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERD 77 (509)
T KOG1298|consen 41 RNDGAADVIIVGAGVAGSALAYALAKDGRRVHVIERD 77 (509)
T ss_pred ccCCcccEEEECCcchHHHHHHHHhhCCcEEEEEecc
Confidence 3467789999999999999999999999999999986
No 267
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=98.45 E-value=3e-07 Score=91.88 Aligned_cols=42 Identities=40% Similarity=0.636 Sum_probs=39.3
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCccee
Q 019346 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIA 97 (342)
Q Consensus 56 ~~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~~gG~~~ 97 (342)
..++|+|||||++|++||+.|++.|++|+|+|+.+.+||.+.
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~ 577 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVK 577 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceee
Confidence 457999999999999999999999999999999999999874
No 268
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.43 E-value=2.7e-06 Score=77.05 Aligned_cols=38 Identities=29% Similarity=0.431 Sum_probs=32.9
Q ss_pred CeEEEECCCHHHHHHHHHHHHc---CCceEEEecCCCCCcc
Q 019346 58 LKVVIAGAGLAGLSTAKYLADA---GHKPLLLEARDVLGGK 95 (342)
Q Consensus 58 ~dv~IiG~G~~G~~~A~~l~~~---g~~v~vle~~~~~gG~ 95 (342)
++|+|||+|++|+++|.+|++. ...|.|+|.+...|+-
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~G 42 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQG 42 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCC
Confidence 6899999999999999999985 1249999999988753
No 269
>PLN02852 ferredoxin-NADP+ reductase
Probab=98.41 E-value=4.4e-07 Score=84.52 Aligned_cols=44 Identities=32% Similarity=0.437 Sum_probs=39.5
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHH--cCCceEEEecCCCCCccee
Q 019346 54 PSKPLKVVIAGAGLAGLSTAKYLAD--AGHKPLLLEARDVLGGKIA 97 (342)
Q Consensus 54 ~~~~~dv~IiG~G~~G~~~A~~l~~--~g~~v~vle~~~~~gG~~~ 97 (342)
.....+|+|||||++|++||..|++ .|++|+|+|+.+.+||.+.
T Consensus 23 ~~~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr 68 (491)
T PLN02852 23 TSEPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVR 68 (491)
T ss_pred CCCCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEe
Confidence 3456789999999999999999997 6999999999999999765
No 270
>PRK07846 mycothione reductase; Reviewed
Probab=98.41 E-value=8.5e-06 Score=76.14 Aligned_cols=39 Identities=18% Similarity=0.276 Sum_probs=33.0
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCcceee
Q 019346 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (342)
Q Consensus 57 ~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~~gG~~~~ 98 (342)
++|++|||||++|.+||.. ..|.+|+|+|+ +..||.|-.
T Consensus 1 ~yD~vVIG~G~~g~~aa~~--~~G~~V~lie~-~~~GGtC~n 39 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDER--FADKRIAIVEK-GTFGGTCLN 39 (451)
T ss_pred CCCEEEECCCHHHHHHHHH--HCCCeEEEEeC-CCCCCcccC
Confidence 4899999999999998866 35999999998 467887755
No 271
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=98.40 E-value=8.9e-06 Score=69.96 Aligned_cols=41 Identities=46% Similarity=0.731 Sum_probs=36.5
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCceEEEecCCC--CCcce
Q 019346 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV--LGGKI 96 (342)
Q Consensus 56 ~~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~--~gG~~ 96 (342)
.++||+|||+|++||.||.+|+.+|.+|+|+|++.. +||..
T Consensus 4 ~~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeqnlGGQA 46 (552)
T COG3573 4 LTADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQNLGGQA 46 (552)
T ss_pred ccccEEEECccHHHHHHHHHHHhcCceEEEEccccccccccee
Confidence 468999999999999999999999999999999754 66654
No 272
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=98.38 E-value=2.3e-06 Score=77.76 Aligned_cols=52 Identities=17% Similarity=0.218 Sum_probs=42.3
Q ss_pred ccchHHHHHHHhcCcEEEecceeeEEEEcCCCCEEEEEecCCcEEEcCEEEEccCHHh
Q 019346 273 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYLISSSFSY 330 (342)
Q Consensus 273 ~l~~~l~~~l~~~Gv~i~~~t~V~~I~~~~~g~~~~v~t~~G~~i~a~~VI~At~~~~ 330 (342)
.+...+.+.++++|+++++++.|++|.. + .|++.+|+++.+|.||+|++...
T Consensus 192 ~~~~~~~~~l~~~gV~v~~~~~v~~i~~--~----~v~~~~g~~i~~D~vi~a~G~~p 243 (364)
T TIGR03169 192 KVRRLVLRLLARRGIEVHEGAPVTRGPD--G----ALILADGRTLPADAILWATGARA 243 (364)
T ss_pred HHHHHHHHHHHHCCCEEEeCCeeEEEcC--C----eEEeCCCCEEecCEEEEccCCCh
Confidence 4556777888889999999999999853 2 36777888999999999998553
No 273
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=98.30 E-value=7.5e-07 Score=83.61 Aligned_cols=42 Identities=36% Similarity=0.525 Sum_probs=38.1
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCcceee
Q 019346 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (342)
Q Consensus 56 ~~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~~gG~~~~ 98 (342)
.++||+|||||++|++||..|++.|++|+|+|+ +..||.+..
T Consensus 2 ~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~GG~~~~ 43 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAKLGKKVALIEK-GPLGGTCLN 43 (460)
T ss_pred CcccEEEECCCHHHHHHHHHHHHCCCeEEEEeC-Cccccceec
Confidence 458999999999999999999999999999999 678887653
No 274
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=98.30 E-value=3.9e-06 Score=76.80 Aligned_cols=48 Identities=10% Similarity=0.155 Sum_probs=36.7
Q ss_pred CcEEEecceeeEEEEcCCCCEEEEEecCCcEEEcCEEEEccCHHhhhcC
Q 019346 286 GGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYLISSSFSYLKTG 334 (342)
Q Consensus 286 Gv~i~~~t~V~~I~~~~~g~~~~v~t~~G~~i~a~~VI~At~~~~~~~L 334 (342)
+..| .+..|.++..+++..+++|.|.+|..+.|+.||++|+.+.-.++
T Consensus 115 NL~l-~q~~v~dli~e~~~~v~GV~t~~G~~~~a~aVVlTTGTFL~G~I 162 (621)
T COG0445 115 NLHL-LQGEVEDLIVEEGQRVVGVVTADGPEFHAKAVVLTTGTFLRGKI 162 (621)
T ss_pred Ccee-hHhhhHHHhhcCCCeEEEEEeCCCCeeecCEEEEeecccccceE
Confidence 5566 46667777664343588999999999999999999998865544
No 275
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=98.28 E-value=8.3e-07 Score=79.67 Aligned_cols=45 Identities=36% Similarity=0.592 Sum_probs=41.3
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCcceeee
Q 019346 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAW 99 (342)
Q Consensus 55 ~~~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~~gG~~~~~ 99 (342)
....+++|||||++|++||..|++.|++|.++|+++.+||++...
T Consensus 122 ~v~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGrmak~ 166 (622)
T COG1148 122 EVSKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRMAKL 166 (622)
T ss_pred hhccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccccHHhh
Confidence 456689999999999999999999999999999999999997653
No 276
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.27 E-value=3.2e-06 Score=72.94 Aligned_cols=76 Identities=20% Similarity=0.190 Sum_probs=56.1
Q ss_pred CCCCCCCeEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCcceeeeccCCCceeecceeEecCCcccHHHHHHHcCCC
Q 019346 52 PRPSKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGIN 131 (342)
Q Consensus 52 ~~~~~~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~~gG~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~~gi~ 131 (342)
.....++|..|||||-.|+++|+..+..|.+|.|+|..-.+||.|....+.+.-.. |....+....+-.+.+|.+
T Consensus 15 a~~~k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTCVn~GCVPKKvm-----~~~a~~~~~~~da~~yG~~ 89 (478)
T KOG0405|consen 15 AADVKDFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCVNVGCVPKKVM-----WYAADYSEEMEDAKDYGFP 89 (478)
T ss_pred cccccccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCceEEeeccccceeE-----EehhhhhHHhhhhhhcCCc
Confidence 44567999999999999999999999999999999998899998877554433222 2222334444445566655
Q ss_pred c
Q 019346 132 D 132 (342)
Q Consensus 132 ~ 132 (342)
.
T Consensus 90 ~ 90 (478)
T KOG0405|consen 90 I 90 (478)
T ss_pred c
Confidence 3
No 277
>PTZ00188 adrenodoxin reductase; Provisional
Probab=98.22 E-value=2.4e-06 Score=78.73 Aligned_cols=43 Identities=35% Similarity=0.290 Sum_probs=38.2
Q ss_pred CCCeEEEECCCHHHHHHHHHHH-HcCCceEEEecCCCCCcceee
Q 019346 56 KPLKVVIAGAGLAGLSTAKYLA-DAGHKPLLLEARDVLGGKIAA 98 (342)
Q Consensus 56 ~~~dv~IiG~G~~G~~~A~~l~-~~g~~v~vle~~~~~gG~~~~ 98 (342)
....|+|||||++|++||.+|+ +.|++|+|+|+.+.+||....
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~ 81 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRY 81 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEE
Confidence 4568999999999999999876 569999999999999998764
No 278
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=98.20 E-value=2.3e-06 Score=84.48 Aligned_cols=42 Identities=21% Similarity=0.369 Sum_probs=36.8
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCcc
Q 019346 54 PSKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGK 95 (342)
Q Consensus 54 ~~~~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~~gG~ 95 (342)
.+...+|+|||||++|++||++|++.|++|+|+|+....|+.
T Consensus 380 ~~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~i~gl~ 421 (1028)
T PRK06567 380 EPTNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLKITLLP 421 (1028)
T ss_pred CCCCCeEEEECcCHHHHHHHHHHHhCCCeEEEEccccccccc
Confidence 346679999999999999999999999999999998765543
No 279
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=98.18 E-value=2.1e-06 Score=78.02 Aligned_cols=37 Identities=35% Similarity=0.503 Sum_probs=34.5
Q ss_pred eEEEECCCHHHHHHHHHHHHc--CCceEEEecCCCCCcc
Q 019346 59 KVVIAGAGLAGLSTAKYLADA--GHKPLLLEARDVLGGK 95 (342)
Q Consensus 59 dv~IiG~G~~G~~~A~~l~~~--g~~v~vle~~~~~gG~ 95 (342)
||+|||||++|+++|+.|++. |++|+|+|+.+.++|.
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~ 39 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGN 39 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCc
Confidence 899999999999999999987 9999999999887764
No 280
>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.17 E-value=5.2e-05 Score=66.91 Aligned_cols=122 Identities=18% Similarity=0.230 Sum_probs=78.4
Q ss_pred hhhhccCCCHHHHHHHcCCChhHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHhhh--hccCc-ceeecCCCCCcccch
Q 019346 200 YVEAQDGLTVQEWMRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQ--EKHGS-KMAFLDGNPPERLCL 276 (342)
Q Consensus 200 ~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~g~-~~~~~~g~~~~~l~~ 276 (342)
...+....++.+||+..++...+..-.+. .+..++....+....+.....|+. +.+|. .+.|+-.| -+.|.+
T Consensus 216 ~~~~~~e~~F~EyL~~~rltp~lqs~vl~----aIaM~~~~~~tt~eGm~at~~fl~slGrfgntpfLfPlYG-qGELpQ 290 (547)
T KOG4405|consen 216 EYVEFRERPFSEYLKTMRLTPKLQSIVLH----AIAMLSESQLTTIEGMDATKNFLTSLGRFGNTPFLFPLYG-QGELPQ 290 (547)
T ss_pred HHHHhhcCcHHHHHHhcCCChhhHHHHHH----HHHhcCcccccHHHHHHHHHHHHHHhhccCCCcceeeccC-CCcchH
Confidence 33455668899999999888766443332 233344554555555554444443 22332 24444444 468999
Q ss_pred HHHHHHHhcCcEEEecceeeEEEEcCCC-CEEEEEecCCcEEEcCEEEEcc
Q 019346 277 PIVEHIQSLGGEVRLNSRVQKIELNDDG-TVKNFLLTNGNVIDGDAYLISS 326 (342)
Q Consensus 277 ~l~~~l~~~Gv~i~~~t~V~~I~~~~~g-~~~~v~t~~G~~i~a~~VI~At 326 (342)
.+.+.+.-.|.-+.+..+|+.|..+... ....+.-..|+++.|+++|++-
T Consensus 291 cFCRlcAVfGgIYcLr~~Vq~ivldk~s~~~~~~l~s~g~ri~~k~~v~s~ 341 (547)
T KOG4405|consen 291 CFCRLCAVFGGIYCLRRPVQAIVLDKESLDCKAILDSFGQRINAKNFVVSP 341 (547)
T ss_pred HHHHHHHHhcceEEeccchhheeecccccchhhhHhhhcchhcceeeeecC
Confidence 9999999999999999999999875332 1122334567788888888763
No 281
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=98.17 E-value=3.2e-06 Score=82.39 Aligned_cols=43 Identities=40% Similarity=0.612 Sum_probs=39.3
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCccee
Q 019346 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIA 97 (342)
Q Consensus 55 ~~~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~~gG~~~ 97 (342)
...++|+|||||++|+++|+.|++.|++|+|+|+.+..||...
T Consensus 191 ~~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~ 233 (652)
T PRK12814 191 KSGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMR 233 (652)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceee
Confidence 3457999999999999999999999999999999999998763
No 282
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=98.17 E-value=2.2e-05 Score=70.89 Aligned_cols=59 Identities=19% Similarity=0.251 Sum_probs=52.4
Q ss_pred ccchHHHHHHHhcCcEEEecceeeEEEEcCCCCEEEEEecCCcEEEcCEEEEccCHHhh
Q 019346 273 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYLISSSFSYL 331 (342)
Q Consensus 273 ~l~~~l~~~l~~~Gv~i~~~t~V~~I~~~~~g~~~~v~t~~G~~i~a~~VI~At~~~~~ 331 (342)
.+.+.+.+.++.+|+++.++|.+.+++-.++|.+..|.+.+|.++.||.||+.+++..+
T Consensus 256 ~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~adlvv~GiG~~p~ 314 (478)
T KOG1336|consen 256 SIGQFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEADLVVVGIGIKPN 314 (478)
T ss_pred HHHHHHHHHHHhcCeEEEEecceeecccCCCCcEEEEEeccCCEeccCeEEEeeccccc
Confidence 45677788888999999999999999987889999999999999999999999987643
No 283
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=98.17 E-value=2.7e-06 Score=77.15 Aligned_cols=36 Identities=42% Similarity=0.379 Sum_probs=33.0
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCceEEEecCCCC
Q 019346 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVL 92 (342)
Q Consensus 57 ~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~~ 92 (342)
..||+|||||++|+.+|+.|+++|++|+|+|+++..
T Consensus 2 ~~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~ 37 (436)
T PRK05335 2 MKPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVK 37 (436)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcc
Confidence 359999999999999999999999999999987654
No 284
>PTZ00367 squalene epoxidase; Provisional
Probab=98.16 E-value=2.5e-06 Score=81.33 Aligned_cols=37 Identities=35% Similarity=0.460 Sum_probs=34.2
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHcCCceEEEecCC
Q 019346 54 PSKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (342)
Q Consensus 54 ~~~~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~ 90 (342)
...++||+|||||++|+++|..|++.|++|+|+|+..
T Consensus 30 ~~~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~ 66 (567)
T PTZ00367 30 TNYDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL 66 (567)
T ss_pred cccCccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence 4467899999999999999999999999999999865
No 285
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=98.14 E-value=1.8e-05 Score=70.83 Aligned_cols=36 Identities=33% Similarity=0.401 Sum_probs=27.3
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcC-CceEEEecCCCC
Q 019346 57 PLKVVIAGAGLAGLSTAKYLADAG-HKPLLLEARDVL 92 (342)
Q Consensus 57 ~~dv~IiG~G~~G~~~A~~l~~~g-~~v~vle~~~~~ 92 (342)
.+|+++||.|+++|+.|..|...+ .+++.||+++..
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f 38 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSF 38 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS-
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCC
Confidence 469999999999999999999875 899999998763
No 286
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.11 E-value=3.4e-05 Score=72.14 Aligned_cols=49 Identities=22% Similarity=0.363 Sum_probs=38.5
Q ss_pred HHHHHhcCcEEEecceeeEEEEcCCCCEEEEEecCCcEEEcCEEEEccCHH
Q 019346 279 VEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYLISSSFS 329 (342)
Q Consensus 279 ~~~l~~~Gv~i~~~t~V~~I~~~~~g~~~~v~t~~G~~i~a~~VI~At~~~ 329 (342)
.+.+.++|+++++++.|++|..++++. .|++.+|+++.+|.||+|++..
T Consensus 214 ~~~l~~~gV~i~~~~~v~~i~~~~~~~--~v~~~~g~~i~~D~viva~G~~ 262 (446)
T TIGR01424 214 ARNMEGRGIRIHPQTSLTSITKTDDGL--KVTLSHGEEIVADVVLFATGRS 262 (446)
T ss_pred HHHHHHCCCEEEeCCEEEEEEEcCCeE--EEEEcCCcEeecCEEEEeeCCC
Confidence 345567799999999999998644443 4667778789999999998765
No 287
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.10 E-value=1.6e-05 Score=64.50 Aligned_cols=55 Identities=16% Similarity=0.241 Sum_probs=42.2
Q ss_pred ccchHHHHHHHhcCcEEEecceeeEEEEcCCCCEEEEEecCCcEEEcCEEEEccCHHhh
Q 019346 273 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYLISSSFSYL 331 (342)
Q Consensus 273 ~l~~~l~~~l~~~Gv~i~~~t~V~~I~~~~~g~~~~v~t~~G~~i~a~~VI~At~~~~~ 331 (342)
.|++.|.++..+.|.+|.+.| |.++...+.- ..+.|+.+ .++||.||+||++.+-
T Consensus 71 ~l~d~mrkqs~r~Gt~i~tEt-Vskv~~sskp--F~l~td~~-~v~~~avI~atGAsAk 125 (322)
T KOG0404|consen 71 ELMDKMRKQSERFGTEIITET-VSKVDLSSKP--FKLWTDAR-PVTADAVILATGASAK 125 (322)
T ss_pred HHHHHHHHHHHhhcceeeeee-hhhccccCCC--eEEEecCC-ceeeeeEEEeccccee
Confidence 456677888888899997655 8888764333 35788777 8999999999988753
No 288
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.09 E-value=3.5e-05 Score=72.36 Aligned_cols=50 Identities=28% Similarity=0.383 Sum_probs=38.7
Q ss_pred HHHHHHhcCcEEEecceeeEEEEcCCCCEEEEEecCCcEEEcCEEEEccCHH
Q 019346 278 IVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYLISSSFS 329 (342)
Q Consensus 278 l~~~l~~~Gv~i~~~t~V~~I~~~~~g~~~~v~t~~G~~i~a~~VI~At~~~ 329 (342)
+.+.+.++|+++++++.|++|+.++++ + .|++.+|+++.+|.||+|++..
T Consensus 224 l~~~L~~~gV~i~~~~~v~~v~~~~~~-~-~v~~~~g~~l~~D~vl~a~G~~ 273 (466)
T PRK07845 224 LEEVFARRGMTVLKRSRAESVERTGDG-V-VVTLTDGRTVEGSHALMAVGSV 273 (466)
T ss_pred HHHHHHHCCcEEEcCCEEEEEEEeCCE-E-EEEECCCcEEEecEEEEeecCC
Confidence 445566779999999999999864444 2 4666788889999999998654
No 289
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=98.06 E-value=3.8e-05 Score=70.86 Aligned_cols=38 Identities=50% Similarity=0.718 Sum_probs=35.7
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCc
Q 019346 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGG 94 (342)
Q Consensus 57 ~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~~gG 94 (342)
..+++|||+|..|+.+|..|+++|++|+++|+.++++|
T Consensus 136 ~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~ 173 (415)
T COG0446 136 PKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGG 173 (415)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccch
Confidence 57999999999999999999999999999999888765
No 290
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=98.04 E-value=6.2e-06 Score=68.19 Aligned_cols=33 Identities=48% Similarity=0.581 Sum_probs=30.7
Q ss_pred eEEEECCCHHHHHHHHHHHHcCCceEEEecCCC
Q 019346 59 KVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (342)
Q Consensus 59 dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~ 91 (342)
||+|||||++|++||..|++.+.+|+|+|+.+.
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~ 33 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPG 33 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSH
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEecccc
Confidence 799999999999999999999999999987654
No 291
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=98.03 E-value=6.3e-06 Score=75.21 Aligned_cols=35 Identities=40% Similarity=0.439 Sum_probs=32.4
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCceEEEecCCCC
Q 019346 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVL 92 (342)
Q Consensus 58 ~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~~ 92 (342)
.||+|||||++|+.||+.|++.|++|+|+|+++..
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~ 35 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEK 35 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEeccccc
Confidence 38999999999999999999999999999987664
No 292
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=98.03 E-value=6.7e-05 Score=69.79 Aligned_cols=48 Identities=25% Similarity=0.407 Sum_probs=36.9
Q ss_pred HHHHHHhcCcEEEecceeeEEEEcCCCCEEEEEecCCcEEEcCEEEEccCHH
Q 019346 278 IVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYLISSSFS 329 (342)
Q Consensus 278 l~~~l~~~Gv~i~~~t~V~~I~~~~~g~~~~v~t~~G~~i~a~~VI~At~~~ 329 (342)
+.+.++++|+++++++.|++|.. ++.+ +++.+|+++.+|.||+|++..
T Consensus 185 ~~~~l~~~gV~v~~~~~v~~i~~--~~~~--v~~~~g~~i~~D~vi~a~G~~ 232 (427)
T TIGR03385 185 VEEELKKHEINLRLNEEVDSIEG--EERV--KVFTSGGVYQADMVILATGIK 232 (427)
T ss_pred HHHHHHHcCCEEEeCCEEEEEec--CCCE--EEEcCCCEEEeCEEEECCCcc
Confidence 34455677999999999999975 3333 455677799999999999765
No 293
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=98.02 E-value=8.7e-06 Score=76.68 Aligned_cols=42 Identities=38% Similarity=0.566 Sum_probs=38.6
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCccee
Q 019346 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIA 97 (342)
Q Consensus 56 ~~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~~gG~~~ 97 (342)
...+|+|||||++|+++|..|++.|++|+|+|+.+.+||.+.
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~ 183 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLM 183 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceee
Confidence 447999999999999999999999999999999999998764
No 294
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=98.02 E-value=8.3e-06 Score=75.35 Aligned_cols=43 Identities=37% Similarity=0.509 Sum_probs=39.7
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCccee
Q 019346 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIA 97 (342)
Q Consensus 55 ~~~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~~gG~~~ 97 (342)
....+|+|||||++||+||+.|++.|+.|+++|+.+..||.+.
T Consensus 121 ~tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~ 163 (457)
T COG0493 121 RTGKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLL 163 (457)
T ss_pred CCCCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEE
Confidence 3447999999999999999999999999999999999999865
No 295
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=98.01 E-value=7.2e-06 Score=80.42 Aligned_cols=46 Identities=37% Similarity=0.546 Sum_probs=41.4
Q ss_pred CCCCCCCeEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCccee
Q 019346 52 PRPSKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIA 97 (342)
Q Consensus 52 ~~~~~~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~~gG~~~ 97 (342)
|....-.+|.|||+|++||+||-.|-+.||.|+|+|+.+++||...
T Consensus 1780 p~~rtg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~ 1825 (2142)
T KOG0399|consen 1780 PAFRTGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLM 1825 (2142)
T ss_pred cccccCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceee
Confidence 3445667999999999999999999999999999999999999754
No 296
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=98.01 E-value=9.1e-06 Score=78.68 Aligned_cols=46 Identities=24% Similarity=0.374 Sum_probs=40.4
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCceEEEecC-CCCCcceeeecc
Q 019346 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR-DVLGGKIAAWKD 101 (342)
Q Consensus 56 ~~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~-~~~gG~~~~~~~ 101 (342)
.+|||+|||+|++|..||..+++.|.+|+|+|+. +.+||.|-...+
T Consensus 115 ~~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~~~lGGtCvn~GC 161 (659)
T PTZ00153 115 EEYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGGTCVNVGC 161 (659)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCccccceeEeCC
Confidence 4789999999999999999999999999999974 478998876543
No 297
>PRK07846 mycothione reductase; Reviewed
Probab=97.97 E-value=7.5e-05 Score=69.82 Aligned_cols=34 Identities=18% Similarity=0.279 Sum_probs=31.2
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCceEEEecCCC
Q 019346 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (342)
Q Consensus 58 ~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~ 91 (342)
.+++|||||+.|+.+|..|++.|.+|+++|+.+.
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ 200 (451)
T PRK07846 167 ESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGR 200 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCc
Confidence 5899999999999999999999999999997543
No 298
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=97.96 E-value=8.6e-05 Score=69.98 Aligned_cols=34 Identities=29% Similarity=0.413 Sum_probs=31.1
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCceEEEecCCC
Q 019346 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (342)
Q Consensus 58 ~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~ 91 (342)
.+|+|||+|.+|+.+|..|++.|.+|+|+|+.+.
T Consensus 184 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~ 217 (475)
T PRK06327 184 KKLAVIGAGVIGLELGSVWRRLGAEVTILEALPA 217 (475)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCc
Confidence 5899999999999999999999999999997643
No 299
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=97.94 E-value=6.1e-05 Score=67.87 Aligned_cols=57 Identities=14% Similarity=0.165 Sum_probs=45.6
Q ss_pred CcccchHHHHHHHhcCcEEEecceeeEEEEcCCCCEEEEEecCC-cEEEcCEEEEccCHHhh
Q 019346 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNG-NVIDGDAYLISSSFSYL 331 (342)
Q Consensus 271 ~~~l~~~l~~~l~~~Gv~i~~~t~V~~I~~~~~g~~~~v~t~~G-~~i~a~~VI~At~~~~~ 331 (342)
...+++.|...+++.||+|+++++|++|. +++. .|++..+ ++++||+||+||+..+.
T Consensus 85 A~sVv~~L~~~l~~~gV~i~~~~~V~~i~--~~~~--~v~~~~~~~~~~a~~vIlAtGG~s~ 142 (376)
T TIGR03862 85 AAPLLRAWLKRLAEQGVQFHTRHRWIGWQ--GGTL--RFETPDGQSTIEADAVVLALGGASW 142 (376)
T ss_pred HHHHHHHHHHHHHHCCCEEEeCCEEEEEe--CCcE--EEEECCCceEEecCEEEEcCCCccc
Confidence 45788899999999999999999999992 3333 5776543 47999999999988654
No 300
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=97.94 E-value=1.7e-05 Score=71.73 Aligned_cols=42 Identities=38% Similarity=0.451 Sum_probs=38.4
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCccee
Q 019346 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIA 97 (342)
Q Consensus 56 ~~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~~gG~~~ 97 (342)
...+|+|||+|++|+++|..|++.|++|+++|+.+.+||.+.
T Consensus 17 ~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~ 58 (352)
T PRK12770 17 TGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLML 58 (352)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceee
Confidence 346999999999999999999999999999999999988654
No 301
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=97.93 E-value=0.00011 Score=68.85 Aligned_cols=34 Identities=24% Similarity=0.354 Sum_probs=30.9
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCceEEEecCCC
Q 019346 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (342)
Q Consensus 58 ~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~ 91 (342)
.+++|||||++|+.+|..|.+.|.+|+++|+.+.
T Consensus 171 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ 204 (458)
T PRK06912 171 SSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQ 204 (458)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCC
Confidence 4899999999999999999999999999997643
No 302
>PRK13984 putative oxidoreductase; Provisional
Probab=97.86 E-value=2.6e-05 Score=75.72 Aligned_cols=43 Identities=40% Similarity=0.518 Sum_probs=39.3
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCccee
Q 019346 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIA 97 (342)
Q Consensus 55 ~~~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~~gG~~~ 97 (342)
....+|+|||+|++|+++|..|++.|++|+|+|+.+.+||...
T Consensus 281 ~~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~ 323 (604)
T PRK13984 281 KKNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMR 323 (604)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEe
Confidence 4567899999999999999999999999999999999998654
No 303
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.85 E-value=0.00017 Score=69.40 Aligned_cols=59 Identities=15% Similarity=0.125 Sum_probs=49.0
Q ss_pred cccchHHHHHHHhcCcEEEecceeeEEEEcCCCCEEEEEe---cCCc--EEEcCEEEEccCHHh
Q 019346 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLL---TNGN--VIDGDAYLISSSFSY 330 (342)
Q Consensus 272 ~~l~~~l~~~l~~~Gv~i~~~t~V~~I~~~~~g~~~~v~t---~~G~--~i~a~~VI~At~~~~ 330 (342)
..++..|.+.+.+.|++|+.+++++++..+++|.+++|.. .+|+ .+.|+.||+||+.+.
T Consensus 126 ~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 189 (570)
T PRK05675 126 HALLHTLYQGNLKNGTTFLNEWYAVDLVKNQDGAVVGVIAICIETGETVYIKSKATVLATGGAG 189 (570)
T ss_pred HHHHHHHHHHHhccCCEEEECcEEEEEEEcCCCeEEEEEEEEcCCCcEEEEecCeEEECCCCcc
Confidence 4678888888888899999999999998755778888865 3564 689999999999875
No 304
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.83 E-value=3.4e-05 Score=66.81 Aligned_cols=57 Identities=19% Similarity=0.328 Sum_probs=41.5
Q ss_pred ccchHHHHHHHhcCcEEEecceeeEEEEc-CCCCEEEEEecCCcEEEcCEEEEccCHH
Q 019346 273 RLCLPIVEHIQSLGGEVRLNSRVQKIELN-DDGTVKNFLLTNGNVIDGDAYLISSSFS 329 (342)
Q Consensus 273 ~l~~~l~~~l~~~Gv~i~~~t~V~~I~~~-~~g~~~~v~t~~G~~i~a~~VI~At~~~ 329 (342)
+|...|.++.++..+.++.-.+++++++. ..+....|++.+|..++++.||++|++.
T Consensus 267 kl~~ale~Hv~~Y~vDimn~qra~~l~~a~~~~~l~ev~l~nGavLkaktvIlstGAr 324 (520)
T COG3634 267 KLAAALEAHVKQYDVDVMNLQRASKLEPAAVEGGLIEVELANGAVLKARTVILATGAR 324 (520)
T ss_pred HHHHHHHHHHhhcCchhhhhhhhhcceecCCCCccEEEEecCCceeccceEEEecCcc
Confidence 44555666666667777777777777763 2233457999999999999999999875
No 305
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.82 E-value=0.00022 Score=66.81 Aligned_cols=33 Identities=18% Similarity=0.314 Sum_probs=30.6
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCceEEEecCC
Q 019346 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (342)
Q Consensus 58 ~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~ 90 (342)
.+++|||+|+.|+..|..|++.|.+|+++|+.+
T Consensus 170 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~ 202 (452)
T TIGR03452 170 ESLVIVGGGYIAAEFAHVFSALGTRVTIVNRST 202 (452)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccC
Confidence 589999999999999999999999999999754
No 306
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.81 E-value=0.00023 Score=67.00 Aligned_cols=34 Identities=21% Similarity=0.374 Sum_probs=31.5
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCceEEEecCCC
Q 019346 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (342)
Q Consensus 58 ~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~ 91 (342)
.+++|||||+.|+..|..|.+.|.+|+|+|+.+.
T Consensus 175 ~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~ 208 (471)
T PRK06467 175 KRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQ 208 (471)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCC
Confidence 5899999999999999999999999999997654
No 307
>PLN02546 glutathione reductase
Probab=97.79 E-value=0.00026 Score=67.69 Aligned_cols=52 Identities=17% Similarity=0.194 Sum_probs=37.7
Q ss_pred HHHHHHhcCcEEEecceeeEEEEcCCCCEEEEEecCCcEEEcCEEEEccCHHh
Q 019346 278 IVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYLISSSFSY 330 (342)
Q Consensus 278 l~~~l~~~Gv~i~~~t~V~~I~~~~~g~~~~v~t~~G~~i~a~~VI~At~~~~ 330 (342)
+.+.++++|+++++++.|++|..++++.+ .+.+.+++.+.+|.||+|++...
T Consensus 299 l~~~L~~~GV~i~~~~~v~~i~~~~~g~v-~v~~~~g~~~~~D~Viva~G~~P 350 (558)
T PLN02546 299 VAEQMSLRGIEFHTEESPQAIIKSADGSL-SLKTNKGTVEGFSHVMFATGRKP 350 (558)
T ss_pred HHHHHHHCCcEEEeCCEEEEEEEcCCCEE-EEEECCeEEEecCEEEEeecccc
Confidence 44556678999999999999986444533 46666664444899999996653
No 308
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=97.78 E-value=2.8e-05 Score=77.35 Aligned_cols=34 Identities=26% Similarity=0.367 Sum_probs=31.8
Q ss_pred CeEEEECCCHHHHHHHHHHHHc--CCceEEEecCCC
Q 019346 58 LKVVIAGAGLAGLSTAKYLADA--GHKPLLLEARDV 91 (342)
Q Consensus 58 ~dv~IiG~G~~G~~~A~~l~~~--g~~v~vle~~~~ 91 (342)
++|+|||||++|+++|..|++. |++|+|+|++..
T Consensus 1 m~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~ 36 (765)
T PRK08255 1 MRIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP 36 (765)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence 4899999999999999999998 899999999875
No 309
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.77 E-value=0.00026 Score=66.82 Aligned_cols=50 Identities=16% Similarity=0.149 Sum_probs=36.8
Q ss_pred HHHHHHhcCcEEEecceeeEEEEcCCCCEEEEEecCC---cEEEcCEEEEccCHH
Q 019346 278 IVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNG---NVIDGDAYLISSSFS 329 (342)
Q Consensus 278 l~~~l~~~Gv~i~~~t~V~~I~~~~~g~~~~v~t~~G---~~i~a~~VI~At~~~ 329 (342)
+.+.++++|++|++++.+++|...+++. .|+..+| +++.+|.||+|++..
T Consensus 226 l~~~L~~~gV~i~~~~~v~~v~~~~~~~--~v~~~~~~~~~~i~~D~vl~a~G~~ 278 (484)
T TIGR01438 226 VGEHMEEHGVKFKRQFVPIKVEQIEAKV--KVTFTDSTNGIEEEYDTVLLAIGRD 278 (484)
T ss_pred HHHHHHHcCCEEEeCceEEEEEEcCCeE--EEEEecCCcceEEEeCEEEEEecCC
Confidence 4556677899999999999998643332 3554444 379999999999654
No 310
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=97.76 E-value=9.5e-06 Score=65.22 Aligned_cols=66 Identities=32% Similarity=0.457 Sum_probs=48.2
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHc--CCceEEEecCCCCCcceeeeccCCCceeecceeEecCCc--ccHHHHHHHcCCC
Q 019346 56 KPLKVVIAGAGLAGLSTAKYLADA--GHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAY--PNIQNLFGELGIN 131 (342)
Q Consensus 56 ~~~dv~IiG~G~~G~~~A~~l~~~--g~~v~vle~~~~~gG~~~~~~~~~~~~~~~G~~~~~~~~--~~~~~l~~~~gi~ 131 (342)
.+.||+|||+|-+||+|||.++++ ..+|.++|+.-.+||-. | .|++.+.... ....-+++++|++
T Consensus 75 AesDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGGa--W---------LGGQLFSAMvvRKPAhLFL~Eigvp 143 (328)
T KOG2960|consen 75 AESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGGA--W---------LGGQLFSAMVVRKPAHLFLQEIGVP 143 (328)
T ss_pred hccceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCcc--c---------ccchhhhhhhhcChHHHHHHHhCCC
Confidence 456999999999999999999965 57999999987777632 1 5666654221 1233467888876
Q ss_pred c
Q 019346 132 D 132 (342)
Q Consensus 132 ~ 132 (342)
-
T Consensus 144 Y 144 (328)
T KOG2960|consen 144 Y 144 (328)
T ss_pred c
Confidence 3
No 311
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=97.75 E-value=0.00033 Score=68.03 Aligned_cols=34 Identities=21% Similarity=0.248 Sum_probs=31.4
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCceEEEecCCC
Q 019346 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (342)
Q Consensus 58 ~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~ 91 (342)
.+|+|||||+.|+..|..|++.|.+|+++|+.+.
T Consensus 313 k~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ 346 (659)
T PTZ00153 313 NYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQ 346 (659)
T ss_pred CceEEECCCHHHHHHHHHHHhCCCeEEEEeccCc
Confidence 4899999999999999999999999999998655
No 312
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=97.65 E-value=0.00062 Score=61.62 Aligned_cols=35 Identities=34% Similarity=0.486 Sum_probs=32.1
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCceEEEecC
Q 019346 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (342)
Q Consensus 55 ~~~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~ 89 (342)
...+||||||||-+|+.||...++.|.+.++|-.+
T Consensus 26 ~~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ 60 (679)
T KOG2311|consen 26 TSTYDVVVIGGGHAGCEAAAAAARLGARTLLLTHN 60 (679)
T ss_pred CCcccEEEECCCccchHHHHHHHhcCCceEEeecc
Confidence 67889999999999999999999999988888765
No 313
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=97.63 E-value=5.6e-05 Score=72.07 Aligned_cols=37 Identities=41% Similarity=0.450 Sum_probs=34.0
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHcCCceEEEecCC
Q 019346 54 PSKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (342)
Q Consensus 54 ~~~~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~ 90 (342)
...++|+||||+|.+|...|..|++.|++|+|||+..
T Consensus 4 ~~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG~ 40 (542)
T COG2303 4 MKMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAGG 40 (542)
T ss_pred ccCCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCCC
Confidence 3568999999999999999999998899999999974
No 314
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=97.63 E-value=8.6e-05 Score=65.10 Aligned_cols=39 Identities=31% Similarity=0.348 Sum_probs=36.1
Q ss_pred eEEEECCCHHHHHHHHHHHHc--CCceEEEecCCCCCccee
Q 019346 59 KVVIAGAGLAGLSTAKYLADA--GHKPLLLEARDVLGGKIA 97 (342)
Q Consensus 59 dv~IiG~G~~G~~~A~~l~~~--g~~v~vle~~~~~gG~~~ 97 (342)
.|.|||+|++|+.+|++|+++ +.+|.|+|+.+.+.|...
T Consensus 22 ~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLvR 62 (468)
T KOG1800|consen 22 RVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLVR 62 (468)
T ss_pred eEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccceee
Confidence 999999999999999999995 689999999999999754
No 315
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=97.63 E-value=0.00055 Score=64.36 Aligned_cols=35 Identities=29% Similarity=0.483 Sum_probs=31.7
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCceEEEecCCC
Q 019346 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (342)
Q Consensus 57 ~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~ 91 (342)
..+++|||+|.+|+..|..|++.|.+|+++|+.+.
T Consensus 169 ~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~ 203 (460)
T PRK06292 169 PKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDR 203 (460)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Confidence 35899999999999999999999999999997654
No 316
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=97.50 E-value=0.00031 Score=59.69 Aligned_cols=49 Identities=14% Similarity=0.148 Sum_probs=36.1
Q ss_pred cccchHHHHHHHhcCcEEEecceeeEEEEcCCCCEEEEEecCCcEEEcCEEEEccCHHhhhcC
Q 019346 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYLISSSFSYLKTG 334 (342)
Q Consensus 272 ~~l~~~l~~~l~~~Gv~i~~~t~V~~I~~~~~g~~~~v~t~~G~~i~a~~VI~At~~~~~~~L 334 (342)
.+++.-|.+.+.++|+++ ++.+|.+++. + .+ -.+|.||.||+.++..+.
T Consensus 151 ~~ylpyl~k~l~e~Gvef-~~r~v~~l~E--------~--~~---~~~DVivNCtGL~a~~L~ 199 (342)
T KOG3923|consen 151 PKYLPYLKKRLTENGVEF-VQRRVESLEE--------V--AR---PEYDVIVNCTGLGAGKLA 199 (342)
T ss_pred hhhhHHHHHHHHhcCcEE-EEeeeccHHH--------h--cc---CCCcEEEECCcccccccc
Confidence 478888999999999999 4666777643 1 11 248889999988876554
No 317
>PLN02785 Protein HOTHEAD
Probab=97.44 E-value=0.00018 Score=69.14 Aligned_cols=37 Identities=30% Similarity=0.417 Sum_probs=33.2
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHcCCceEEEecCCC
Q 019346 54 PSKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (342)
Q Consensus 54 ~~~~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~ 91 (342)
....+|+||||||.+|+.+|..|++ +.+|+|||+...
T Consensus 52 ~~~~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~~ 88 (587)
T PLN02785 52 GDSAYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGGV 88 (587)
T ss_pred ccccCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCCC
Confidence 3567999999999999999999999 689999999753
No 318
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=97.44 E-value=0.00051 Score=65.48 Aligned_cols=52 Identities=17% Similarity=0.286 Sum_probs=44.1
Q ss_pred hHHHHHHHhcCcEEEecceeeEEEEcCCCCEEEEEecCCcEEEcCEEEEccCHH
Q 019346 276 LPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYLISSSFS 329 (342)
Q Consensus 276 ~~l~~~l~~~Gv~i~~~t~V~~I~~~~~g~~~~v~t~~G~~i~a~~VI~At~~~ 329 (342)
..|...+++.|+++++++.+.+|.. .+.+.++...+|..+.||-||+|++..
T Consensus 191 ~lL~~~le~~Gi~~~l~~~t~ei~g--~~~~~~vr~~DG~~i~ad~VV~a~GIr 242 (793)
T COG1251 191 RLLRRKLEDLGIKVLLEKNTEEIVG--EDKVEGVRFADGTEIPADLVVMAVGIR 242 (793)
T ss_pred HHHHHHHHhhcceeecccchhhhhc--CcceeeEeecCCCcccceeEEEecccc
Confidence 3466777888999999999999875 556778999999999999999999655
No 319
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=97.38 E-value=0.002 Score=57.87 Aligned_cols=37 Identities=16% Similarity=0.153 Sum_probs=27.2
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHcCC--ceEEEecCC
Q 019346 54 PSKPLKVVIAGAGLAGLSTAKYLADAGH--KPLLLEARD 90 (342)
Q Consensus 54 ~~~~~dv~IiG~G~~G~~~A~~l~~~g~--~v~vle~~~ 90 (342)
......|+|||||.++..++..|.+++. +|+++=++.
T Consensus 187 ~~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~ 225 (341)
T PF13434_consen 187 SLAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSP 225 (341)
T ss_dssp ----EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSS
T ss_pred ccCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCC
Confidence 4566799999999999999999999864 788887654
No 320
>PF07156 Prenylcys_lyase: Prenylcysteine lyase; InterPro: IPR010795 This entry represents a conserved region found in a group of prenylcysteine lyases (1.8.3.5 from EC) that are approximately 500 residues long. Prenylcysteine lyase is a FAD-dependent thioether oxidase that degrades a variety of prenylcysteines, producing free cysteine, an isoprenoid aldehyde and hydrogen peroxide as products of the reaction []. It has been noted that this enzyme has considerable homology with ClP55, a 55 kDa protein that is associated with chloride ion pumps [].; GO: 0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor, 0030328 prenylcysteine catabolic process, 0055114 oxidation-reduction process
Probab=97.34 E-value=0.00058 Score=61.53 Aligned_cols=115 Identities=20% Similarity=0.309 Sum_probs=74.3
Q ss_pred cCCCHHHHHHHcCCChhHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHhhhhccCcceeecCCCCCcccchHHHHHHHh
Q 019346 205 DGLTVQEWMRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCLPIVEHIQS 284 (342)
Q Consensus 205 ~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~l~~~l~~~l~~ 284 (342)
...+..+||++.|++..+.++++....+..++.+ .++.....+..+.+ ..+..|. +.||+ .++..+|++.
T Consensus 68 t~~t~~e~L~~~gi~~~fi~Elv~a~tRvNYgQ~-~~i~a~~G~vSla~----a~~gl~s-V~GGN-~qI~~~ll~~--- 137 (368)
T PF07156_consen 68 TKVTGEEYLKENGISERFINELVQAATRVNYGQN-VNIHAFAGLVSLAG----ATGGLWS-VEGGN-WQIFEGLLEA--- 137 (368)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHhheEeecccc-cchhhhhhheeeee----ccCCceE-ecCCH-HHHHHHHHHH---
Confidence 3477899999999999999999998888888765 34444333322211 1233344 44442 4666666654
Q ss_pred cCcEEEecceeeEE-EEcCCCC-EEEEEecC--C-cEEEcCEEEEccCHHh
Q 019346 285 LGGEVRLNSRVQKI-ELNDDGT-VKNFLLTN--G-NVIDGDAYLISSSFSY 330 (342)
Q Consensus 285 ~Gv~i~~~t~V~~I-~~~~~g~-~~~v~t~~--G-~~i~a~~VI~At~~~~ 330 (342)
.|.++ +|+.|++| ...+++. .+.|+..+ + ..-..|.||+|+|...
T Consensus 138 S~A~v-l~~~Vt~I~~~~~~~~~~y~v~~~~~~~~~~~~yD~VVIAtPl~~ 187 (368)
T PF07156_consen 138 SGANV-LNTTVTSITRRSSDGYSLYEVTYKSSSGTESDEYDIVVIATPLQQ 187 (368)
T ss_pred ccCcE-ecceeEEEEeccCCCceeEEEEEecCCCCccccCCEEEECCCccc
Confidence 47889 89999999 4434443 23454433 2 2345699999999964
No 321
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=97.33 E-value=0.00068 Score=60.34 Aligned_cols=58 Identities=24% Similarity=0.314 Sum_probs=47.8
Q ss_pred CcccchHHHHHHHhcCcEEEecceeeEEEEcCCCCEEEEEecCCcEEEcCEEEEccCHHh
Q 019346 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYLISSSFSY 330 (342)
Q Consensus 271 ~~~l~~~l~~~l~~~Gv~i~~~t~V~~I~~~~~g~~~~v~t~~G~~i~a~~VI~At~~~~ 330 (342)
|+-|.+.-.+.+++.||.++-|..|.++.....+.+ +.+.+|.+++.|+||+|++..-
T Consensus 392 Peyls~wt~ekir~~GV~V~pna~v~sv~~~~~nl~--lkL~dG~~l~tD~vVvavG~eP 449 (659)
T KOG1346|consen 392 PEYLSQWTIEKIRKGGVDVRPNAKVESVRKCCKNLV--LKLSDGSELRTDLVVVAVGEEP 449 (659)
T ss_pred HHHHHHHHHHHHHhcCceeccchhhhhhhhhccceE--EEecCCCeeeeeeEEEEecCCC
Confidence 455666677888888999999999999987555544 8899999999999999996553
No 322
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=97.32 E-value=0.00098 Score=58.78 Aligned_cols=41 Identities=29% Similarity=0.484 Sum_probs=35.8
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCcc
Q 019346 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGK 95 (342)
Q Consensus 55 ~~~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~~gG~ 95 (342)
......+|||||+.||..+..-.+.|.+||++|..+.+||.
T Consensus 209 ~vPk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~ 249 (506)
T KOG1335|consen 209 EVPKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGV 249 (506)
T ss_pred hCcceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhccc
Confidence 34568999999999999999999999999999988777663
No 323
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=97.03 E-value=0.00068 Score=58.55 Aligned_cols=35 Identities=37% Similarity=0.474 Sum_probs=32.4
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCceEEEecCCC
Q 019346 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (342)
Q Consensus 57 ~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~ 91 (342)
...|-|||||++|..|||.++++|..|.++|.++.
T Consensus 3 ~~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~ 37 (439)
T COG1206 3 QQPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPV 37 (439)
T ss_pred CCceEEEcccccccHHHHHHHHcCCcEEEEEcccc
Confidence 34689999999999999999999999999999976
No 324
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.00 E-value=0.00083 Score=58.23 Aligned_cols=59 Identities=17% Similarity=0.235 Sum_probs=43.3
Q ss_pred CcccchHHHHHHHhcCcEEEecceeeEEEEcCCCCEEEEEe---cCC--cEEEcCEEEEccCHHh
Q 019346 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLL---TNG--NVIDGDAYLISSSFSY 330 (342)
Q Consensus 271 ~~~l~~~l~~~l~~~Gv~i~~~t~V~~I~~~~~g~~~~v~t---~~G--~~i~a~~VI~At~~~~ 330 (342)
.+.++..+.+.++++|+.+.-.+..++|++.++|.. .|.. ..+ .+-..|.|++|++-..
T Consensus 237 Dqdmae~v~~~m~~~Gikf~~~~vp~~Veq~~~g~l-~v~~k~t~t~~~~~~~ydTVl~AiGR~~ 300 (503)
T KOG4716|consen 237 DQDMAELVAEHMEERGIKFLRKTVPERVEQIDDGKL-RVFYKNTNTGEEGEEEYDTVLWAIGRKA 300 (503)
T ss_pred cHHHHHHHHHHHHHhCCceeecccceeeeeccCCcE-EEEeecccccccccchhhhhhhhhcccc
Confidence 457888889999999999999989999988777752 3322 222 2556889999986553
No 325
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.89 E-value=0.021 Score=51.18 Aligned_cols=38 Identities=29% Similarity=0.368 Sum_probs=33.3
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcC-CceEEEecCCCC
Q 019346 55 SKPLKVVIAGAGLAGLSTAKYLADAG-HKPLLLEARDVL 92 (342)
Q Consensus 55 ~~~~dv~IiG~G~~G~~~A~~l~~~g-~~v~vle~~~~~ 92 (342)
....|++.||-|+.-|+.|..|...+ ++++.||+.+..
T Consensus 3 ~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F 41 (436)
T COG3486 3 AEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDF 41 (436)
T ss_pred CcceeeEEEccCchHHHHHHHhccccCcceEEEecCCCC
Confidence 35689999999999999999999875 789999998763
No 326
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=96.83 E-value=0.0029 Score=58.29 Aligned_cols=38 Identities=32% Similarity=0.351 Sum_probs=34.4
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCc
Q 019346 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGG 94 (342)
Q Consensus 57 ~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~~gG 94 (342)
..+|+|||+|..|+.+|..|++.|.+|+|+|+.+.+.+
T Consensus 144 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~ 181 (396)
T PRK09754 144 ERSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMG 181 (396)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchh
Confidence 35899999999999999999999999999999887654
No 327
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=96.79 E-value=0.003 Score=58.63 Aligned_cols=40 Identities=33% Similarity=0.421 Sum_probs=35.5
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCc
Q 019346 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGG 94 (342)
Q Consensus 55 ~~~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~~gG 94 (342)
..+..++|||||+.|+-.|..+++.|.+|+|+|+.+++--
T Consensus 171 ~lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp 210 (454)
T COG1249 171 ELPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILP 210 (454)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCC
Confidence 3445899999999999999999999999999999987544
No 328
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=96.62 E-value=0.0028 Score=50.18 Aligned_cols=32 Identities=38% Similarity=0.528 Sum_probs=30.2
Q ss_pred eEEEECCCHHHHHHHHHHHHcCCceEEEecCC
Q 019346 59 KVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (342)
Q Consensus 59 dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~ 90 (342)
+|.|||||..|.+.|..|+++|++|+++.++.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 58999999999999999999999999999865
No 329
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=96.40 E-value=0.0045 Score=58.56 Aligned_cols=39 Identities=28% Similarity=0.339 Sum_probs=34.7
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHc-CCceEEEecCCCC
Q 019346 54 PSKPLKVVIAGAGLAGLSTAKYLADA-GHKPLLLEARDVL 92 (342)
Q Consensus 54 ~~~~~dv~IiG~G~~G~~~A~~l~~~-g~~v~vle~~~~~ 92 (342)
....+|.||||||-+|+..|..|++. ..+|+|||+....
T Consensus 54 ~~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~ 93 (623)
T KOG1238|consen 54 LDSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP 93 (623)
T ss_pred cccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence 46789999999999999999999997 5799999997654
No 330
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.39 E-value=0.005 Score=58.22 Aligned_cols=35 Identities=31% Similarity=0.570 Sum_probs=31.7
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCceEEEecCCC
Q 019346 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (342)
Q Consensus 57 ~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~ 91 (342)
..+|+|||+|.+|+++|..|+++|++|+++|+++.
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~ 50 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLELGARVTVVDDGDD 50 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch
Confidence 45899999999999999999999999999997653
No 331
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=96.33 E-value=0.0044 Score=50.38 Aligned_cols=34 Identities=29% Similarity=0.557 Sum_probs=27.4
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCceEEEecCCC
Q 019346 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (342)
Q Consensus 58 ~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~ 91 (342)
++|.|||.|+.|+..|..|++.|++|+.+|.+..
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~ 34 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEE 34 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HH
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChH
Confidence 5799999999999999999999999999998754
No 332
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=96.29 E-value=0.0056 Score=49.58 Aligned_cols=33 Identities=33% Similarity=0.416 Sum_probs=28.6
Q ss_pred eEEEECCCHHHHHHHHHHHHcCCceEEEecCCC
Q 019346 59 KVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (342)
Q Consensus 59 dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~ 91 (342)
.|.|||+|..|...|..++..|++|+++|.++.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~ 33 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPE 33 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChH
Confidence 589999999999999999999999999998654
No 333
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=96.28 E-value=0.0052 Score=54.86 Aligned_cols=37 Identities=41% Similarity=0.546 Sum_probs=32.0
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHc----CCceEEEecCC
Q 019346 54 PSKPLKVVIAGAGLAGLSTAKYLADA----GHKPLLLEARD 90 (342)
Q Consensus 54 ~~~~~dv~IiG~G~~G~~~A~~l~~~----g~~v~vle~~~ 90 (342)
....+||+|||||+.|++.|..|... ..+|+++|..+
T Consensus 33 ~~~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~ 73 (481)
T KOG3855|consen 33 DTAKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGD 73 (481)
T ss_pred CcccCCEEEECCchHHHHHHHHhccCCccchheeeEEeccc
Confidence 45589999999999999999999865 45999999984
No 334
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.24 E-value=0.0058 Score=57.46 Aligned_cols=33 Identities=21% Similarity=0.418 Sum_probs=30.8
Q ss_pred eEEEECCCHHHHHHHHHHHHcCCceEEEecCCC
Q 019346 59 KVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (342)
Q Consensus 59 dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~ 91 (342)
+|.|||.|.+|+++|..|.+.|++|++.|++..
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~ 34 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDS 34 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCc
Confidence 589999999999999999999999999998754
No 335
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=96.11 E-value=0.0082 Score=56.63 Aligned_cols=35 Identities=40% Similarity=0.549 Sum_probs=32.7
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCceEEEecCCCC
Q 019346 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVL 92 (342)
Q Consensus 58 ~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~~ 92 (342)
.+|+|||||++|+.+|..|++.|.+|+++|+.+.+
T Consensus 181 ~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~i 215 (472)
T PRK05976 181 KSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRI 215 (472)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCcc
Confidence 59999999999999999999999999999998764
No 336
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=96.11 E-value=0.01 Score=55.47 Aligned_cols=36 Identities=28% Similarity=0.336 Sum_probs=33.2
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCC
Q 019346 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLG 93 (342)
Q Consensus 58 ~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~~g 93 (342)
.+|+|||+|++|+.+|..|++.|.+|+++|+.+.+-
T Consensus 158 ~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l 193 (438)
T PRK07251 158 ERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTIL 193 (438)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccC
Confidence 489999999999999999999999999999987654
No 337
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=96.06 E-value=0.01 Score=54.24 Aligned_cols=37 Identities=30% Similarity=0.409 Sum_probs=33.4
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCC
Q 019346 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLG 93 (342)
Q Consensus 57 ~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~~g 93 (342)
..+|+|||||.+|+.+|..|++.|.+|+++++.+.+.
T Consensus 141 ~~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l 177 (377)
T PRK04965 141 AQRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLL 177 (377)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCccc
Confidence 4589999999999999999999999999999987644
No 338
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=96.01 E-value=0.012 Score=46.17 Aligned_cols=31 Identities=39% Similarity=0.502 Sum_probs=29.2
Q ss_pred EEEECCCHHHHHHHHHHHHcCCceEEEecCC
Q 019346 60 VVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (342)
Q Consensus 60 v~IiG~G~~G~~~A~~l~~~g~~v~vle~~~ 90 (342)
|+|+|+|..|...|+.|++.|++|+++.+..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence 6899999999999999999999999999865
No 339
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=95.94 E-value=0.012 Score=49.59 Aligned_cols=34 Identities=35% Similarity=0.672 Sum_probs=31.8
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCceEEEecCCC
Q 019346 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (342)
Q Consensus 58 ~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~ 91 (342)
++++|||+|-.|.+.|..|.+.|++|+++|+.+.
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~ 34 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEE 34 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHH
Confidence 4799999999999999999999999999999764
No 340
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=95.93 E-value=0.012 Score=55.42 Aligned_cols=36 Identities=31% Similarity=0.429 Sum_probs=33.2
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCC
Q 019346 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLG 93 (342)
Q Consensus 58 ~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~~g 93 (342)
.+++|||||.+|+.+|..|.+.|.+|+++|+.+.+.
T Consensus 171 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l 206 (461)
T TIGR01350 171 ESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRIL 206 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCC
Confidence 589999999999999999999999999999987653
No 341
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=95.90 E-value=0.029 Score=52.56 Aligned_cols=36 Identities=22% Similarity=0.235 Sum_probs=32.5
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCceEEEecCCC
Q 019346 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (342)
Q Consensus 56 ~~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~ 91 (342)
...+|+|||||.+|+-+|..|.+.|.+|+++++++.
T Consensus 271 ~gk~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~ 306 (449)
T TIGR01316 271 AGKSVVVIGGGNTAVDSARTALRLGAEVHCLYRRTR 306 (449)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCEEEEEeecCc
Confidence 346899999999999999999999999999998754
No 342
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=95.89 E-value=0.013 Score=54.98 Aligned_cols=36 Identities=28% Similarity=0.342 Sum_probs=33.3
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCC
Q 019346 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLG 93 (342)
Q Consensus 58 ~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~~g 93 (342)
.+++|||||.+|+-.|..|++.|.+|+++|+.+.+.
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il 202 (450)
T TIGR01421 167 KRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVL 202 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCC
Confidence 589999999999999999999999999999987654
No 343
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=95.87 E-value=0.012 Score=55.31 Aligned_cols=36 Identities=25% Similarity=0.368 Sum_probs=33.1
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCC
Q 019346 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLG 93 (342)
Q Consensus 58 ~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~~g 93 (342)
.+++|||+|.+|+.+|..|++.|.+|+++|+.+.+.
T Consensus 167 ~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l 202 (463)
T TIGR02053 167 ESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLL 202 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCC
Confidence 589999999999999999999999999999987643
No 344
>PRK12831 putative oxidoreductase; Provisional
Probab=95.82 E-value=0.032 Score=52.52 Aligned_cols=36 Identities=19% Similarity=0.251 Sum_probs=32.3
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCceEEEecCCC
Q 019346 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (342)
Q Consensus 56 ~~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~ 91 (342)
...+|+|||||.+|+-+|..|.+.|.+|+++++++.
T Consensus 280 ~gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~~ 315 (464)
T PRK12831 280 VGKKVAVVGGGNVAMDAARTALRLGAEVHIVYRRSE 315 (464)
T ss_pred CCCeEEEECCcHHHHHHHHHHHHcCCEEEEEeecCc
Confidence 456999999999999999999999999999997653
No 345
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=95.81 E-value=0.016 Score=54.54 Aligned_cols=37 Identities=27% Similarity=0.424 Sum_probs=33.4
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCC
Q 019346 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLG 93 (342)
Q Consensus 57 ~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~~g 93 (342)
..+++|||+|+.|+..|..|++.|.+|+|+|+.+.+.
T Consensus 174 ~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il 210 (466)
T PRK06115 174 PKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRIC 210 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCC
Confidence 3589999999999999999999999999999877643
No 346
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=95.80 E-value=0.013 Score=52.04 Aligned_cols=33 Identities=42% Similarity=0.467 Sum_probs=31.0
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCceEEEecCC
Q 019346 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (342)
Q Consensus 58 ~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~ 90 (342)
.+|.|||+|.-|.+.|..|+++|++|+++|+..
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~ 35 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADP 35 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCH
Confidence 379999999999999999999999999999875
No 347
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=95.78 E-value=0.014 Score=48.19 Aligned_cols=36 Identities=31% Similarity=0.364 Sum_probs=30.0
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCceEEEecCC
Q 019346 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (342)
Q Consensus 55 ~~~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~ 90 (342)
-...+|+|||+|.++.-+|..|++.|.+|+++=+++
T Consensus 165 ~~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~ 200 (203)
T PF13738_consen 165 FKGKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSP 200 (203)
T ss_dssp CTTSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS-
T ss_pred cCCCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCC
Confidence 345799999999999999999999999999998765
No 348
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=95.73 E-value=0.016 Score=54.63 Aligned_cols=36 Identities=25% Similarity=0.324 Sum_probs=33.1
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCC
Q 019346 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLG 93 (342)
Q Consensus 58 ~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~~g 93 (342)
.+++|||+|++|+.+|..|++.|.+|+++|+.+.+.
T Consensus 173 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l 208 (462)
T PRK06416 173 KSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRIL 208 (462)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcC
Confidence 589999999999999999999999999999987653
No 349
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=95.72 E-value=0.021 Score=57.39 Aligned_cols=35 Identities=29% Similarity=0.368 Sum_probs=32.4
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCceEEEecCCCC
Q 019346 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVL 92 (342)
Q Consensus 58 ~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~~ 92 (342)
.+++|||||.+|+-+|..|++.|.+|+|+|..+.+
T Consensus 141 k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~l 175 (785)
T TIGR02374 141 KKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGL 175 (785)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCch
Confidence 58999999999999999999999999999987764
No 350
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=95.72 E-value=0.015 Score=54.38 Aligned_cols=37 Identities=27% Similarity=0.445 Sum_probs=33.6
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCc
Q 019346 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGG 94 (342)
Q Consensus 58 ~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~~gG 94 (342)
.+++|||||..|+-.|..|++.|.+|+++++.+.+..
T Consensus 149 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~ 185 (438)
T PRK13512 149 DKALVVGAGYISLEVLENLYERGLHPTLIHRSDKINK 185 (438)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccch
Confidence 5899999999999999999999999999999876543
No 351
>PRK06370 mercuric reductase; Validated
Probab=95.70 E-value=0.019 Score=54.08 Aligned_cols=38 Identities=29% Similarity=0.389 Sum_probs=34.2
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCCc
Q 019346 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGG 94 (342)
Q Consensus 57 ~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~~gG 94 (342)
..+|+|||+|..|+.+|..|++.|.+|+++|+.+.+..
T Consensus 171 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~ 208 (463)
T PRK06370 171 PEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLP 208 (463)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCc
Confidence 35899999999999999999999999999999876543
No 352
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=95.67 E-value=0.018 Score=54.16 Aligned_cols=37 Identities=38% Similarity=0.513 Sum_probs=33.8
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCC
Q 019346 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLG 93 (342)
Q Consensus 57 ~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~~g 93 (342)
..+++|||||.+|+.+|..|++.|.+|+|+|+.+.+.
T Consensus 175 ~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l 211 (461)
T PRK05249 175 PRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLL 211 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcC
Confidence 4589999999999999999999999999999987654
No 353
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=95.65 E-value=0.017 Score=54.40 Aligned_cols=36 Identities=33% Similarity=0.349 Sum_probs=32.7
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCC
Q 019346 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLG 93 (342)
Q Consensus 58 ~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~~g 93 (342)
.+++|||+|++|+.+|..|++.|.+|+|+|+.+.+.
T Consensus 173 ~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l 208 (466)
T PRK07818 173 KSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRAL 208 (466)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcC
Confidence 589999999999999999999999999999876543
No 354
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=95.51 E-value=0.026 Score=45.11 Aligned_cols=36 Identities=31% Similarity=0.477 Sum_probs=30.3
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCceEEEecCC
Q 019346 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (342)
Q Consensus 55 ~~~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~ 90 (342)
-....|+|+|+|.+|..||..|...|.+|+++|...
T Consensus 18 ~~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~ 53 (168)
T PF01262_consen 18 VPPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERP 53 (168)
T ss_dssp E-T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH
T ss_pred CCCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCH
Confidence 345799999999999999999999999999999754
No 355
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=95.50 E-value=0.018 Score=51.45 Aligned_cols=33 Identities=30% Similarity=0.640 Sum_probs=31.0
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCceEEEecCC
Q 019346 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (342)
Q Consensus 58 ~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~ 90 (342)
++|.|||+|+.||+.|.-|++.||+|+.+|..+
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~ 33 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDE 33 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCH
Confidence 579999999999999999999999999999875
No 356
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.48 E-value=0.022 Score=53.40 Aligned_cols=34 Identities=38% Similarity=0.698 Sum_probs=31.8
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCceEEEecCC
Q 019346 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (342)
Q Consensus 57 ~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~ 90 (342)
...|+|||+|..|+++|..|++.|++|+++|...
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 4689999999999999999999999999999874
No 357
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=95.46 E-value=0.029 Score=49.86 Aligned_cols=35 Identities=29% Similarity=0.314 Sum_probs=31.8
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCceEEEecCC
Q 019346 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (342)
Q Consensus 56 ~~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~ 90 (342)
..++|+|||+|..|.+.|..|++.|++|+++.+..
T Consensus 4 ~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 4 ETPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred cCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 34689999999999999999999999999998864
No 358
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=95.41 E-value=0.032 Score=56.32 Aligned_cols=35 Identities=29% Similarity=0.443 Sum_probs=32.3
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCceEEEecCCCC
Q 019346 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVL 92 (342)
Q Consensus 58 ~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~~ 92 (342)
.+++|||||+.|+-+|..|++.|.+|+|+|..+.+
T Consensus 146 k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~l 180 (847)
T PRK14989 146 KRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPML 180 (847)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeccccc
Confidence 47999999999999999999999999999987753
No 359
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=95.30 E-value=0.049 Score=52.59 Aligned_cols=58 Identities=7% Similarity=0.078 Sum_probs=48.0
Q ss_pred cccchHHHHHHHhcCcEEEecceeeEEEEcCCCCEEEEEe---cCCc--EEEcCEEEEccCHHh
Q 019346 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLL---TNGN--VIDGDAYLISSSFSY 330 (342)
Q Consensus 272 ~~l~~~l~~~l~~~Gv~i~~~t~V~~I~~~~~g~~~~v~t---~~G~--~i~a~~VI~At~~~~ 330 (342)
..++..|.+.+.+.|++|+++++|+++.. ++|.+++|.. .+|+ .+.|+.||+||+...
T Consensus 119 ~~i~~~L~~~~~~~gi~i~~~~~~~~Li~-~~g~v~Ga~~~~~~~g~~~~i~AkaVILATGG~~ 181 (565)
T TIGR01816 119 HAILHTLYQQNLKADTSFFNEYFALDLLM-EDGECRGVIAYCLETGEIHRFRAKAVVLATGGYG 181 (565)
T ss_pred HHHHHHHHHHHHhCCCEEEeccEEEEEEe-eCCEEEEEEEEEcCCCcEEEEEeCeEEECCCCcc
Confidence 36888888888888999999999999987 4677878764 3453 689999999998875
No 360
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=95.28 E-value=0.034 Score=46.01 Aligned_cols=34 Identities=24% Similarity=0.325 Sum_probs=31.0
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCceEEEecCC
Q 019346 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (342)
Q Consensus 57 ~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~ 90 (342)
...|+|||||..|...+..|.+.|.+|+|++...
T Consensus 9 gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~ 42 (205)
T TIGR01470 9 GRAVLVVGGGDVALRKARLLLKAGAQLRVIAEEL 42 (205)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 4589999999999999999999999999998753
No 361
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=95.24 E-value=0.029 Score=53.58 Aligned_cols=36 Identities=31% Similarity=0.334 Sum_probs=32.4
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCceEEEecCCCC
Q 019346 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVL 92 (342)
Q Consensus 57 ~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~~ 92 (342)
..+|+|||||.+|+-+|..|++.|.+|+++|..+.+
T Consensus 352 ~k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l 387 (515)
T TIGR03140 352 GKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADEL 387 (515)
T ss_pred CCEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcC
Confidence 459999999999999999999999999999976654
No 362
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.20 E-value=0.028 Score=49.23 Aligned_cols=33 Identities=30% Similarity=0.347 Sum_probs=30.6
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCceEEEecCC
Q 019346 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (342)
Q Consensus 58 ~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~ 90 (342)
.+|.|||+|.-|.+.|..|++.|++|+++|..+
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISD 36 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 479999999999999999999999999999764
No 363
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=95.20 E-value=0.053 Score=41.62 Aligned_cols=35 Identities=31% Similarity=0.336 Sum_probs=31.3
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCc-eEEEecC
Q 019346 55 SKPLKVVIAGAGLAGLSTAKYLADAGHK-PLLLEAR 89 (342)
Q Consensus 55 ~~~~dv~IiG~G~~G~~~A~~l~~~g~~-v~vle~~ 89 (342)
-....++|||+|-+|-++++.|.+.|.+ |+|+-|.
T Consensus 10 l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt 45 (135)
T PF01488_consen 10 LKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRT 45 (135)
T ss_dssp GTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESS
T ss_pred cCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECC
Confidence 3567999999999999999999999986 9999875
No 364
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.18 E-value=0.029 Score=49.24 Aligned_cols=32 Identities=31% Similarity=0.546 Sum_probs=30.2
Q ss_pred eEEEECCCHHHHHHHHHHHHcCCceEEEecCC
Q 019346 59 KVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (342)
Q Consensus 59 dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~ 90 (342)
+|.|||+|.-|...|..|++.|++|+++|.++
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~ 34 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQ 34 (288)
T ss_pred EEEEECccHHHHHHHHHHHhCCCcEEEEeCCH
Confidence 69999999999999999999999999999864
No 365
>PTZ00058 glutathione reductase; Provisional
Probab=95.18 E-value=0.032 Score=53.63 Aligned_cols=37 Identities=16% Similarity=0.282 Sum_probs=33.5
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCC
Q 019346 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLG 93 (342)
Q Consensus 57 ~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~~g 93 (342)
..+|+|||||..|+..|..|++.|.+|+++|+.+.+.
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il 273 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLL 273 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEeccccc
Confidence 4589999999999999999999999999999987643
No 366
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=95.16 E-value=0.035 Score=49.08 Aligned_cols=34 Identities=32% Similarity=0.217 Sum_probs=31.3
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCceEEEecCC
Q 019346 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (342)
Q Consensus 57 ~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~ 90 (342)
.++|+|||+|..|...|..|++.|.+|+++.+..
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~ 35 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARAGLPVRLILRDR 35 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhCCCCeEEEEech
Confidence 4589999999999999999999999999999863
No 367
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=95.15 E-value=0.022 Score=41.41 Aligned_cols=35 Identities=26% Similarity=0.400 Sum_probs=31.3
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCceEEEecCC
Q 019346 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (342)
Q Consensus 56 ~~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~ 90 (342)
+...|+|||+|..|..-+..|.+.|.+|+|+....
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~ 40 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI 40 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence 45689999999999999999999999999999873
No 368
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=95.15 E-value=0.036 Score=51.84 Aligned_cols=36 Identities=25% Similarity=0.434 Sum_probs=32.5
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCceEEEecCCCC
Q 019346 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVL 92 (342)
Q Consensus 57 ~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~~ 92 (342)
..+|+|||||++|+.+|..|.+.|.+|+++++.+.+
T Consensus 149 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~ 184 (444)
T PRK09564 149 IKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRI 184 (444)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCccc
Confidence 358999999999999999999999999999987653
No 369
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.06 E-value=0.034 Score=49.34 Aligned_cols=33 Identities=12% Similarity=0.131 Sum_probs=30.8
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCceEEEecCC
Q 019346 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (342)
Q Consensus 58 ~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~ 90 (342)
..|.|||+|.-|...|..++..|++|+++|..+
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~ 40 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAP 40 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 479999999999999999999999999999864
No 370
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.03 E-value=0.031 Score=48.96 Aligned_cols=34 Identities=32% Similarity=0.435 Sum_probs=31.5
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCceEEEecCCC
Q 019346 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (342)
Q Consensus 58 ~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~ 91 (342)
..|.|||+|.-|...|..+++.|++|+++|..+.
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~ 39 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEE 39 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHH
Confidence 3799999999999999999999999999998764
No 371
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=95.02 E-value=0.076 Score=53.22 Aligned_cols=36 Identities=19% Similarity=0.262 Sum_probs=31.8
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCc-eEEEecCCC
Q 019346 56 KPLKVVIAGAGLAGLSTAKYLADAGHK-PLLLEARDV 91 (342)
Q Consensus 56 ~~~dv~IiG~G~~G~~~A~~l~~~g~~-v~vle~~~~ 91 (342)
...+|+|||||.+|+-+|..+.+.|.+ |+|+++++.
T Consensus 569 ~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~~ 605 (752)
T PRK12778 569 FGKKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRSE 605 (752)
T ss_pred CCCcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCc
Confidence 346899999999999999999999986 999998653
No 372
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=94.94 E-value=0.039 Score=48.74 Aligned_cols=32 Identities=41% Similarity=0.532 Sum_probs=29.8
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCceEEEecC
Q 019346 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (342)
Q Consensus 58 ~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~ 89 (342)
++|.|||+|..|...|..|++.|++|++++++
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~ 32 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAGHDVTLVARR 32 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence 36999999999999999999999999999984
No 373
>PLN02507 glutathione reductase
Probab=94.89 E-value=0.043 Score=52.10 Aligned_cols=36 Identities=19% Similarity=0.309 Sum_probs=32.7
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCceEEEecCCCC
Q 019346 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVL 92 (342)
Q Consensus 57 ~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~~ 92 (342)
..+|+|||+|..|+-.|..|++.|.+|+|+++.+.+
T Consensus 203 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~ 238 (499)
T PLN02507 203 PKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELP 238 (499)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCc
Confidence 358999999999999999999999999999987753
No 374
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=94.89 E-value=0.041 Score=48.63 Aligned_cols=31 Identities=26% Similarity=0.447 Sum_probs=29.3
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCceEEEec
Q 019346 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEA 88 (342)
Q Consensus 58 ~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~ 88 (342)
++|.|||+|..|...|..|++.|++|+++.+
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence 3699999999999999999999999999987
No 375
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=94.89 E-value=0.053 Score=44.77 Aligned_cols=34 Identities=24% Similarity=0.283 Sum_probs=30.9
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCceEEEecC
Q 019346 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (342)
Q Consensus 56 ~~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~ 89 (342)
....|+|||||-.|...|..|.+.|.+|+|++..
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 4569999999999999999999999999999764
No 376
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=94.89 E-value=0.055 Score=42.70 Aligned_cols=32 Identities=28% Similarity=0.290 Sum_probs=29.7
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCceEEEe
Q 019346 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLE 87 (342)
Q Consensus 56 ~~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle 87 (342)
....|+|||||-.|..-|..|.+.|++|+|+.
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIs 43 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDTGAFVTVVS 43 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence 45689999999999999999999999999995
No 377
>PRK06116 glutathione reductase; Validated
Probab=94.82 E-value=0.048 Score=51.15 Aligned_cols=36 Identities=28% Similarity=0.405 Sum_probs=32.8
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCceEEEecCCCC
Q 019346 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVL 92 (342)
Q Consensus 57 ~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~~ 92 (342)
..+|+|||+|.+|+..|..|++.|.+|+++++.+.+
T Consensus 167 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~ 202 (450)
T PRK06116 167 PKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAP 202 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence 358999999999999999999999999999987754
No 378
>PRK10262 thioredoxin reductase; Provisional
Probab=94.81 E-value=0.05 Score=48.52 Aligned_cols=36 Identities=28% Similarity=0.439 Sum_probs=32.7
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCceEEEecCCCC
Q 019346 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVL 92 (342)
Q Consensus 57 ~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~~ 92 (342)
..+|+|||+|.+|+-+|..|++.+.+|+++++.+..
T Consensus 146 g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~ 181 (321)
T PRK10262 146 NQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGF 181 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCcc
Confidence 458999999999999999999999999999987653
No 379
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.80 E-value=0.041 Score=48.35 Aligned_cols=33 Identities=36% Similarity=0.323 Sum_probs=30.8
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCceEEEecCC
Q 019346 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (342)
Q Consensus 58 ~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~ 90 (342)
.+|.|||+|.-|...|..|+++|++|+++|.++
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~ 37 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSA 37 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 479999999999999999999999999999864
No 380
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=94.79 E-value=0.023 Score=47.76 Aligned_cols=34 Identities=35% Similarity=0.590 Sum_probs=28.8
Q ss_pred eEEEECCCHHHHHHHHHHHHc--CCceEEEecCCCC
Q 019346 59 KVVIAGAGLAGLSTAKYLADA--GHKPLLLEARDVL 92 (342)
Q Consensus 59 dv~IiG~G~~G~~~A~~l~~~--g~~v~vle~~~~~ 92 (342)
+.+|||||++|.+||-.|+.. ...|+++-+.+.+
T Consensus 1 kfivvgggiagvscaeqla~~~psa~illitass~v 36 (334)
T KOG2755|consen 1 KFIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFV 36 (334)
T ss_pred CeEEEcCccccccHHHHHHhhCCCCcEEEEeccHHH
Confidence 368999999999999999974 5689999887653
No 381
>PRK13748 putative mercuric reductase; Provisional
Probab=94.77 E-value=0.051 Score=52.51 Aligned_cols=33 Identities=21% Similarity=0.351 Sum_probs=30.8
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCceEEEecCC
Q 019346 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (342)
Q Consensus 58 ~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~ 90 (342)
.+++|||||+.|+-.|..|++.|.+|+|+++..
T Consensus 271 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~ 303 (561)
T PRK13748 271 ERLAVIGSSVVALELAQAFARLGSKVTILARST 303 (561)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEecCc
Confidence 589999999999999999999999999999754
No 382
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=94.76 E-value=0.048 Score=51.00 Aligned_cols=36 Identities=31% Similarity=0.390 Sum_probs=32.7
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCceEEEecCCCCC
Q 019346 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLG 93 (342)
Q Consensus 58 ~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~~g 93 (342)
.+++|||+|+.|+..|..|.+.|.+|+++|+.+.+.
T Consensus 159 ~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l 194 (441)
T PRK08010 159 GHLGILGGGYIGVEFASMFANFGSKVTILEAASLFL 194 (441)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence 489999999999999999999999999999876543
No 383
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=94.75 E-value=0.049 Score=48.21 Aligned_cols=33 Identities=36% Similarity=0.520 Sum_probs=29.9
Q ss_pred CeEEEECCCHHHHHHHHHHHHcC--CceEEEecCC
Q 019346 58 LKVVIAGAGLAGLSTAKYLADAG--HKPLLLEARD 90 (342)
Q Consensus 58 ~dv~IiG~G~~G~~~A~~l~~~g--~~v~vle~~~ 90 (342)
++|.|||+|..|.++|+.|+..| ..|+++|.+.
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~ 35 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINK 35 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCc
Confidence 47999999999999999999998 4899999865
No 384
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=94.74 E-value=0.046 Score=52.68 Aligned_cols=36 Identities=19% Similarity=0.301 Sum_probs=32.7
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCceEEEecCCC
Q 019346 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (342)
Q Consensus 56 ~~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~ 91 (342)
...+|+|||||.+|+-.|..|++.|.+|+++++.+.
T Consensus 142 ~g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~ 177 (555)
T TIGR03143 142 TGMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPD 177 (555)
T ss_pred CCCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCc
Confidence 346899999999999999999999999999998765
No 385
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=94.70 E-value=0.055 Score=48.94 Aligned_cols=35 Identities=31% Similarity=0.353 Sum_probs=31.1
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCc-eEEEecCCC
Q 019346 57 PLKVVIAGAGLAGLSTAKYLADAGHK-PLLLEARDV 91 (342)
Q Consensus 57 ~~dv~IiG~G~~G~~~A~~l~~~g~~-v~vle~~~~ 91 (342)
...|+|||+|..|+.+|..|.+.|.+ |+|+++++.
T Consensus 172 g~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~~ 207 (352)
T PRK12770 172 GKKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRTI 207 (352)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecch
Confidence 45899999999999999999999986 999997654
No 386
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=94.67 E-value=0.067 Score=42.66 Aligned_cols=36 Identities=19% Similarity=0.195 Sum_probs=31.5
Q ss_pred CCCCCeEEEECCCH-HHHHHHHHHHHcCCceEEEecC
Q 019346 54 PSKPLKVVIAGAGL-AGLSTAKYLADAGHKPLLLEAR 89 (342)
Q Consensus 54 ~~~~~dv~IiG~G~-~G~~~A~~l~~~g~~v~vle~~ 89 (342)
.-...+++|||+|- .|..+|..|.+.|.+|++..+.
T Consensus 41 ~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~ 77 (168)
T cd01080 41 DLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK 77 (168)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence 34667999999996 6999999999999999999875
No 387
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=94.64 E-value=0.055 Score=48.72 Aligned_cols=33 Identities=27% Similarity=0.354 Sum_probs=30.8
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCceEEEecCC
Q 019346 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (342)
Q Consensus 58 ~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~ 90 (342)
++|.|||+|.-|.+.|..|++.|++|+++++..
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~ 35 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRAR 35 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCcEEEEecHH
Confidence 579999999999999999999999999999854
No 388
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=94.62 E-value=0.058 Score=44.43 Aligned_cols=36 Identities=36% Similarity=0.386 Sum_probs=32.3
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCC-ceEEEecCCC
Q 019346 56 KPLKVVIAGAGLAGLSTAKYLADAGH-KPLLLEARDV 91 (342)
Q Consensus 56 ~~~dv~IiG~G~~G~~~A~~l~~~g~-~v~vle~~~~ 91 (342)
...+|+|||+|..|..+|..|++.|. +++++|....
T Consensus 20 ~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~v 56 (200)
T TIGR02354 20 EQATVAICGLGGLGSNVAINLARAGIGKLILVDFDVV 56 (200)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEE
Confidence 45689999999999999999999998 6999998744
No 389
>PRK14694 putative mercuric reductase; Provisional
Probab=94.58 E-value=0.062 Score=50.67 Aligned_cols=33 Identities=21% Similarity=0.363 Sum_probs=30.5
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCceEEEecCC
Q 019346 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (342)
Q Consensus 58 ~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~ 90 (342)
.+++|||+|++|+..|..|++.|.+|+++++..
T Consensus 179 ~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~ 211 (468)
T PRK14694 179 ERLLVIGASVVALELAQAFARLGSRVTVLARSR 211 (468)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEECCC
Confidence 589999999999999999999999999998743
No 390
>PTZ00052 thioredoxin reductase; Provisional
Probab=94.58 E-value=0.058 Score=51.28 Aligned_cols=32 Identities=31% Similarity=0.418 Sum_probs=30.0
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCceEEEecC
Q 019346 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (342)
Q Consensus 58 ~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~ 89 (342)
.+++|||+|+.|+-.|..|++.|.+|+|+++.
T Consensus 183 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~ 214 (499)
T PTZ00052 183 GKTLIVGASYIGLETAGFLNELGFDVTVAVRS 214 (499)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcC
Confidence 48999999999999999999999999999874
No 391
>PRK14727 putative mercuric reductase; Provisional
Probab=94.57 E-value=0.063 Score=50.78 Aligned_cols=33 Identities=15% Similarity=0.269 Sum_probs=30.6
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCceEEEecCC
Q 019346 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (342)
Q Consensus 58 ~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~ 90 (342)
.+++|||+|+.|+-.|..|.+.|.+|+++++..
T Consensus 189 k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~ 221 (479)
T PRK14727 189 ASLTVIGSSVVAAEIAQAYARLGSRVTILARST 221 (479)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEEcCC
Confidence 589999999999999999999999999998753
No 392
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=94.57 E-value=0.05 Score=47.80 Aligned_cols=33 Identities=18% Similarity=0.391 Sum_probs=30.8
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCceEEEecCC
Q 019346 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (342)
Q Consensus 58 ~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~ 90 (342)
.+|.|||+|.-|...|..|++.|++|+++|.++
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSE 36 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 479999999999999999999999999999875
No 393
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=94.55 E-value=0.056 Score=51.64 Aligned_cols=37 Identities=30% Similarity=0.316 Sum_probs=32.9
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCceEEEecCCCC
Q 019346 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVL 92 (342)
Q Consensus 56 ~~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~~ 92 (342)
...+|+|||||.+|+-+|..|+..+.+|+|++..+.+
T Consensus 350 ~gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l 386 (517)
T PRK15317 350 KGKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPEL 386 (517)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEECccc
Confidence 3459999999999999999999999999999987653
No 394
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=94.53 E-value=0.063 Score=50.78 Aligned_cols=37 Identities=22% Similarity=0.328 Sum_probs=31.3
Q ss_pred CCeEEEECCCHHHHHHHHHHHH---cCCceEEEecCCCCC
Q 019346 57 PLKVVIAGAGLAGLSTAKYLAD---AGHKPLLLEARDVLG 93 (342)
Q Consensus 57 ~~dv~IiG~G~~G~~~A~~l~~---~g~~v~vle~~~~~g 93 (342)
..+++|||||++|+..|..+.. .|.+|+|+|+.+.+.
T Consensus 187 ~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il 226 (486)
T TIGR01423 187 PRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMIL 226 (486)
T ss_pred CCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCccc
Confidence 3589999999999999987654 389999999987754
No 395
>PRK04148 hypothetical protein; Provisional
Probab=94.47 E-value=0.051 Score=41.27 Aligned_cols=34 Identities=24% Similarity=0.371 Sum_probs=30.7
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCceEEEecCCC
Q 019346 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (342)
Q Consensus 57 ~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~ 91 (342)
..++++||.| .|.+.|..|++.|++|+.+|-++.
T Consensus 17 ~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~ 50 (134)
T PRK04148 17 NKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEK 50 (134)
T ss_pred CCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence 3589999999 999999999999999999998765
No 396
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=94.43 E-value=0.061 Score=41.24 Aligned_cols=39 Identities=36% Similarity=0.375 Sum_probs=32.2
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCC-ceEEEecCCCCCcc
Q 019346 57 PLKVVIAGAGLAGLSTAKYLADAGH-KPLLLEARDVLGGK 95 (342)
Q Consensus 57 ~~dv~IiG~G~~G~~~A~~l~~~g~-~v~vle~~~~~gG~ 95 (342)
+.+|+|||+|-.|...|..|++.|. +++++|....--..
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~n 41 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIVEPSN 41 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB-GGG
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcceeecc
Confidence 4689999999999999999999997 79999986553333
No 397
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.42 E-value=0.056 Score=47.22 Aligned_cols=33 Identities=30% Similarity=0.403 Sum_probs=30.2
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCceEEEecCC
Q 019346 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (342)
Q Consensus 58 ~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~ 90 (342)
.+|.|||+|..|.+.|..|++.|++|+++|.++
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~ 36 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISD 36 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCH
Confidence 379999999999999999999999999999654
No 398
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=94.39 E-value=0.078 Score=46.86 Aligned_cols=34 Identities=32% Similarity=0.433 Sum_probs=30.2
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCC-ceEEEecCCC
Q 019346 58 LKVVIAGAGLAGLSTAKYLADAGH-KPLLLEARDV 91 (342)
Q Consensus 58 ~dv~IiG~G~~G~~~A~~l~~~g~-~v~vle~~~~ 91 (342)
++|.|||+|..|..+|+.|+..|+ +|+++|..+.
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~ 36 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEG 36 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCC
Confidence 479999999999999999999886 8999998543
No 399
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=94.35 E-value=0.073 Score=46.70 Aligned_cols=36 Identities=31% Similarity=0.449 Sum_probs=32.2
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCceEEEecCCC
Q 019346 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (342)
Q Consensus 56 ~~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~ 91 (342)
...+|+|||+|.+|+-+|..|++.+.+|+++++.+.
T Consensus 140 ~~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~ 175 (300)
T TIGR01292 140 KNKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDK 175 (300)
T ss_pred CCCEEEEECCChHHHHHHHHHHhhcCEEEEEEeCcc
Confidence 346899999999999999999999999999998654
No 400
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=94.32 E-value=0.073 Score=48.38 Aligned_cols=35 Identities=29% Similarity=0.427 Sum_probs=31.7
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCceEEEecCC
Q 019346 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (342)
Q Consensus 56 ~~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~ 90 (342)
...+|+|||+|..|..+|..|.+.|.+|++++++.
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~ 200 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDINI 200 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence 45679999999999999999999999999999864
No 401
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=94.26 E-value=0.038 Score=50.31 Aligned_cols=38 Identities=32% Similarity=0.372 Sum_probs=30.7
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcC-------------CceEEEecCCCCC
Q 019346 56 KPLKVVIAGAGLAGLSTAKYLADAG-------------HKPLLLEARDVLG 93 (342)
Q Consensus 56 ~~~dv~IiG~G~~G~~~A~~l~~~g-------------~~v~vle~~~~~g 93 (342)
...+++|||||++|.-.|-+|+..- .+|+++|+.+++-
T Consensus 154 ~~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~IL 204 (405)
T COG1252 154 ALLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRIL 204 (405)
T ss_pred ceeEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhc
Confidence 4458999999999999999998741 2888999887644
No 402
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=94.23 E-value=0.058 Score=49.91 Aligned_cols=33 Identities=33% Similarity=0.517 Sum_probs=30.6
Q ss_pred eEEEECCCHHHHHHHHHHHHcCCceEEEecCCC
Q 019346 59 KVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (342)
Q Consensus 59 dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~ 91 (342)
+|.|||.|..|+..|..|++.|++|++++.+..
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~ 34 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQE 34 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCCeEEEEECCHH
Confidence 699999999999999999999999999998643
No 403
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=94.17 E-value=0.058 Score=46.63 Aligned_cols=36 Identities=31% Similarity=0.460 Sum_probs=33.2
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHcCCceEEEecC
Q 019346 54 PSKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (342)
Q Consensus 54 ~~~~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~ 89 (342)
.-...+|+|||+|..|.-+|..+.--|.+|+++|.+
T Consensus 165 GV~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n 200 (371)
T COG0686 165 GVLPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLN 200 (371)
T ss_pred CCCCccEEEECCccccchHHHHHhccCCeeEEEecC
Confidence 456679999999999999999999999999999998
No 404
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=94.12 E-value=0.093 Score=46.51 Aligned_cols=34 Identities=29% Similarity=0.441 Sum_probs=31.5
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCceEEEecCC
Q 019346 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (342)
Q Consensus 57 ~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~ 90 (342)
.++|.|||+|.-|.+.|..|++.|++|++++++.
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~ 37 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASANGHRVRVWSRRS 37 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 4689999999999999999999999999999865
No 405
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=94.09 E-value=0.093 Score=45.19 Aligned_cols=42 Identities=24% Similarity=0.272 Sum_probs=35.5
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcC-CceEEEecCCCCCccee
Q 019346 56 KPLKVVIAGAGLAGLSTAKYLADAG-HKPLLLEARDVLGGKIA 97 (342)
Q Consensus 56 ~~~dv~IiG~G~~G~~~A~~l~~~g-~~v~vle~~~~~gG~~~ 97 (342)
....|+|||.|-.|..+|..|++.| -+++|+|.....-.++.
T Consensus 29 ~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V~~sNln 71 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVCVTNTN 71 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEecccccc
Confidence 4568999999999999999999999 58999998766544443
No 406
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=94.07 E-value=0.12 Score=40.02 Aligned_cols=33 Identities=36% Similarity=0.549 Sum_probs=29.6
Q ss_pred CeEEEECC-CHHHHHHHHHHHHcCC--ceEEEecCC
Q 019346 58 LKVVIAGA-GLAGLSTAKYLADAGH--KPLLLEARD 90 (342)
Q Consensus 58 ~dv~IiG~-G~~G~~~A~~l~~~g~--~v~vle~~~ 90 (342)
++|.|||+ |..|.+.|+.|...+. ++.++|...
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~ 36 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINE 36 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSH
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCc
Confidence 47999999 9999999999999864 799999874
No 407
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=94.03 E-value=0.069 Score=49.42 Aligned_cols=33 Identities=21% Similarity=0.336 Sum_probs=30.9
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCceEEEecCC
Q 019346 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (342)
Q Consensus 58 ~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~ 90 (342)
.+|.|||.|..|+..|..|++.|++|+++|.++
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~ 36 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQ 36 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCH
Confidence 579999999999999999999999999999764
No 408
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=93.94 E-value=0.086 Score=48.70 Aligned_cols=36 Identities=28% Similarity=0.464 Sum_probs=33.4
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCceEEEecCCCC
Q 019346 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVL 92 (342)
Q Consensus 57 ~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~~ 92 (342)
.++|+|+|-|.+|+++|..|.+.|.+|++.|.++..
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~ 42 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAP 42 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCc
Confidence 678999999999999999999999999999977665
No 409
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=93.88 E-value=0.094 Score=46.89 Aligned_cols=32 Identities=28% Similarity=0.241 Sum_probs=30.0
Q ss_pred eEEEECCCHHHHHHHHHHHHcCCceEEEecCC
Q 019346 59 KVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (342)
Q Consensus 59 dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~ 90 (342)
+|.|||+|.-|.+.|..|++.|++|+++.++.
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~ 33 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKISVNLWGRNH 33 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEecCH
Confidence 69999999999999999999999999999853
No 410
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=93.85 E-value=0.11 Score=43.62 Aligned_cols=35 Identities=34% Similarity=0.654 Sum_probs=31.1
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCC---ceEEEecCC
Q 019346 56 KPLKVVIAGAGLAGLSTAKYLADAGH---KPLLLEARD 90 (342)
Q Consensus 56 ~~~dv~IiG~G~~G~~~A~~l~~~g~---~v~vle~~~ 90 (342)
.+.+++|+|+|-+|..+|..|.+.|. +|.|+++..
T Consensus 24 ~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~g 61 (226)
T cd05311 24 EEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKG 61 (226)
T ss_pred cCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCC
Confidence 45689999999999999999999996 599999974
No 411
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=93.84 E-value=0.19 Score=51.52 Aligned_cols=35 Identities=20% Similarity=0.299 Sum_probs=31.8
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCceEEEecCC
Q 019346 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (342)
Q Consensus 56 ~~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~ 90 (342)
...+|+|||||.+|+-+|..+.+.|.+|+++.+++
T Consensus 446 ~Gk~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~ 480 (944)
T PRK12779 446 KGKEVFVIGGGNTAMDAARTAKRLGGNVTIVYRRT 480 (944)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEecC
Confidence 45689999999999999999999999999998764
No 412
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=93.78 E-value=0.09 Score=49.44 Aligned_cols=36 Identities=19% Similarity=0.271 Sum_probs=31.8
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCC-ceEEEecCCC
Q 019346 56 KPLKVVIAGAGLAGLSTAKYLADAGH-KPLLLEARDV 91 (342)
Q Consensus 56 ~~~dv~IiG~G~~G~~~A~~l~~~g~-~v~vle~~~~ 91 (342)
...+|+|||+|.+|+-+|..|.+.|. +|+++++++.
T Consensus 272 ~g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~ 308 (457)
T PRK11749 272 VGKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGR 308 (457)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCc
Confidence 45689999999999999999999987 8999998653
No 413
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.75 E-value=0.098 Score=46.42 Aligned_cols=33 Identities=27% Similarity=0.453 Sum_probs=30.4
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCceEEEecCC
Q 019346 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (342)
Q Consensus 58 ~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~ 90 (342)
.+|.|||+|.-|.+.|..|++.|++|++++.+.
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~ 37 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVME 37 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 479999999999999999999999999999754
No 414
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=93.69 E-value=0.099 Score=49.30 Aligned_cols=36 Identities=31% Similarity=0.463 Sum_probs=32.4
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCceEEEecCC
Q 019346 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (342)
Q Consensus 55 ~~~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~ 90 (342)
....+|+|||+|..|+.++..+...|.+|+++|.++
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~ 198 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRP 198 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 346699999999999999999999999999999875
No 415
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=93.58 E-value=0.079 Score=46.03 Aligned_cols=38 Identities=24% Similarity=0.378 Sum_probs=32.6
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHc-C-CceEEEecCCC
Q 019346 54 PSKPLKVVIAGAGLAGLSTAKYLADA-G-HKPLLLEARDV 91 (342)
Q Consensus 54 ~~~~~dv~IiG~G~~G~~~A~~l~~~-g-~~v~vle~~~~ 91 (342)
.+..++|+|||||.+|++.|..+.++ | -+|.|+|-.+.
T Consensus 36 ~~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~ 75 (446)
T KOG3851|consen 36 ARKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAED 75 (446)
T ss_pred cccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhh
Confidence 45789999999999999999999986 4 48999998754
No 416
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=93.55 E-value=0.1 Score=45.89 Aligned_cols=33 Identities=36% Similarity=0.438 Sum_probs=30.6
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCceEEEecCC
Q 019346 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (342)
Q Consensus 58 ~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~ 90 (342)
..|.|||+|.-|...|..|++.|++|+++|.+.
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~ 37 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDP 37 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 369999999999999999999999999999764
No 417
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=93.54 E-value=0.13 Score=46.12 Aligned_cols=34 Identities=29% Similarity=0.334 Sum_probs=31.2
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCceEEEecCC
Q 019346 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (342)
Q Consensus 57 ~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~ 90 (342)
.++|.|||+|.-|.+.|..|++.|++|+++++..
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~ 37 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAASKGVPVRLWARRP 37 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 3579999999999999999999999999999864
No 418
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=93.53 E-value=0.11 Score=48.29 Aligned_cols=36 Identities=36% Similarity=0.417 Sum_probs=30.7
Q ss_pred CeEEEECCCHHHHHHHHHHHH--------------cCCceEEEecCCCCC
Q 019346 58 LKVVIAGAGLAGLSTAKYLAD--------------AGHKPLLLEARDVLG 93 (342)
Q Consensus 58 ~dv~IiG~G~~G~~~A~~l~~--------------~g~~v~vle~~~~~g 93 (342)
..++|||||++|+..|..|+. .+.+|+++|+.+.+-
T Consensus 174 ~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll 223 (424)
T PTZ00318 174 LHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVL 223 (424)
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCccc
Confidence 489999999999999999875 368899999987643
No 419
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.49 E-value=0.15 Score=45.23 Aligned_cols=35 Identities=23% Similarity=0.393 Sum_probs=30.5
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCC--ceEEEecCC
Q 019346 56 KPLKVVIAGAGLAGLSTAKYLADAGH--KPLLLEARD 90 (342)
Q Consensus 56 ~~~dv~IiG~G~~G~~~A~~l~~~g~--~v~vle~~~ 90 (342)
...+|.|||+|..|.++|+.|+..+. .++++|...
T Consensus 2 ~~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~ 38 (312)
T cd05293 2 PRNKVTVVGVGQVGMACAISILAKGLADELVLVDVVE 38 (312)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 34599999999999999999998875 799999754
No 420
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=93.48 E-value=0.093 Score=43.18 Aligned_cols=38 Identities=29% Similarity=0.355 Sum_probs=33.9
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHcCCceEEEecCCC
Q 019346 54 PSKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (342)
Q Consensus 54 ~~~~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~ 91 (342)
......|.|||||.-|.-.|...+..|++|.+++++..
T Consensus 8 ~~~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~ 45 (298)
T KOG2304|consen 8 MAEIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANED 45 (298)
T ss_pred cccccceEEEcccccchhHHHHHHhcCCceEEecCCHH
Confidence 34556899999999999999999999999999999764
No 421
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.47 E-value=0.11 Score=48.94 Aligned_cols=34 Identities=18% Similarity=0.061 Sum_probs=31.1
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCceEEEecCC
Q 019346 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (342)
Q Consensus 57 ~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~ 90 (342)
..+|+|+|.|.+|.++|..|.+.|.+|++.|.++
T Consensus 8 ~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~ 41 (468)
T PRK04690 8 GRRVALWGWGREGRAAYRALRAHLPAQALTLFCN 41 (468)
T ss_pred CCEEEEEccchhhHHHHHHHHHcCCEEEEEcCCC
Confidence 3479999999999999999999999999999754
No 422
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=93.38 E-value=0.15 Score=44.56 Aligned_cols=35 Identities=29% Similarity=0.327 Sum_probs=31.1
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCC-ceEEEecCC
Q 019346 56 KPLKVVIAGAGLAGLSTAKYLADAGH-KPLLLEARD 90 (342)
Q Consensus 56 ~~~dv~IiG~G~~G~~~A~~l~~~g~-~v~vle~~~ 90 (342)
...+|+|||+|-+|-++|+.|++.|. +|+|+++..
T Consensus 126 ~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~ 161 (284)
T PRK12549 126 SLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDP 161 (284)
T ss_pred cCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCH
Confidence 34689999999999999999999997 799998864
No 423
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=93.37 E-value=0.13 Score=45.89 Aligned_cols=33 Identities=33% Similarity=0.433 Sum_probs=30.6
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCceEEEecCC
Q 019346 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (342)
Q Consensus 58 ~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~ 90 (342)
++|.|||+|..|...|..|++.|++|+++++.+
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~ 34 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARNGHDVTLWARDP 34 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence 479999999999999999999999999999864
No 424
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=93.34 E-value=0.13 Score=46.60 Aligned_cols=32 Identities=28% Similarity=0.446 Sum_probs=30.6
Q ss_pred CeEEEECCCHHHHHHHHHHHHcC-CceEEEecC
Q 019346 58 LKVVIAGAGLAGLSTAKYLADAG-HKPLLLEAR 89 (342)
Q Consensus 58 ~dv~IiG~G~~G~~~A~~l~~~g-~~v~vle~~ 89 (342)
.+|+|||+|-.|..+|+.|+++| .+|++.++.
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs 34 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRS 34 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCC
Confidence 58999999999999999999998 899999998
No 425
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=93.33 E-value=0.12 Score=48.50 Aligned_cols=33 Identities=21% Similarity=0.254 Sum_probs=29.4
Q ss_pred CeEEEECCCHHHHHHHHHHHHcC--CceEEEecCC
Q 019346 58 LKVVIAGAGLAGLSTAKYLADAG--HKPLLLEARD 90 (342)
Q Consensus 58 ~dv~IiG~G~~G~~~A~~l~~~g--~~v~vle~~~ 90 (342)
++|.|||+|..|+..|..|++.| ++|+.+|...
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~ 36 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISV 36 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCH
Confidence 57999999999999999999984 7899999764
No 426
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=93.33 E-value=0.11 Score=45.75 Aligned_cols=39 Identities=28% Similarity=0.232 Sum_probs=32.5
Q ss_pred CCCCCCeEEEECCCHHHHHHHHHHHHcCCceEEEecCCC
Q 019346 53 RPSKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (342)
Q Consensus 53 ~~~~~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~ 91 (342)
+.-+-.||+|||||-+|+.||.-|+---.+|++||=.+.
T Consensus 350 PLF~gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~e 388 (520)
T COG3634 350 PLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPE 388 (520)
T ss_pred cccCCceEEEECCCcchHHHHHhHHhhhheeeeeecchh
Confidence 345677999999999999999999966568999996544
No 427
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=93.30 E-value=0.21 Score=46.65 Aligned_cols=39 Identities=23% Similarity=0.308 Sum_probs=34.5
Q ss_pred CCCCCCeEEEECCCHHHHHHHHHHHHcCCceEEEecCCC
Q 019346 53 RPSKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (342)
Q Consensus 53 ~~~~~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~ 91 (342)
..-...+|+|||+|.+|.-.|-.|++.|.+|+++-+.+.
T Consensus 171 ~~~~GKrV~VIG~GaSA~di~~~l~~~ga~vt~~qRs~~ 209 (443)
T COG2072 171 EDLRGKRVLVIGAGASAVDIAPELAEVGASVTLSQRSPP 209 (443)
T ss_pred cccCCCeEEEECCCccHHHHHHHHHhcCCeeEEEecCCC
Confidence 344567999999999999999999999999999998764
No 428
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.30 E-value=0.12 Score=48.63 Aligned_cols=33 Identities=24% Similarity=0.491 Sum_probs=30.7
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCceEEEecCC
Q 019346 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (342)
Q Consensus 58 ~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~ 90 (342)
.+|.|+|.|.+|+++|..|.+.|++|++.|..+
T Consensus 15 ~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~ 47 (458)
T PRK01710 15 KKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKS 47 (458)
T ss_pred CeEEEEcccHHHHHHHHHHHHCCCEEEEECCCC
Confidence 479999999999999999999999999999764
No 429
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=93.29 E-value=4.8 Score=36.87 Aligned_cols=39 Identities=23% Similarity=0.298 Sum_probs=33.8
Q ss_pred CCCCCCeEEEECCCHHHHHHHHHHHHcCCceEEEecCCC
Q 019346 53 RPSKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (342)
Q Consensus 53 ~~~~~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~ 91 (342)
...++.+|||+|+|=+|.+....|-..-++|+|+.-++.
T Consensus 51 ~~~kKk~vVVLGsGW~a~S~lk~ldts~YdV~vVSPRny 89 (491)
T KOG2495|consen 51 NGGKKKRVVVLGSGWGAISLLKKLDTSLYDVTVVSPRNY 89 (491)
T ss_pred CCCCCceEEEEcCchHHHHHHHhccccccceEEeccccc
Confidence 455678999999999999999888888899999998764
No 430
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.24 E-value=0.13 Score=48.16 Aligned_cols=34 Identities=24% Similarity=0.355 Sum_probs=30.7
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCceEEEecCC
Q 019346 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (342)
Q Consensus 57 ~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~ 90 (342)
...++|+|+|-+|+++|..|++.|++|++.|...
T Consensus 5 ~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~ 38 (447)
T PRK02472 5 NKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKP 38 (447)
T ss_pred CCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 3479999999999999999999999999999754
No 431
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.22 E-value=0.15 Score=47.69 Aligned_cols=35 Identities=29% Similarity=0.407 Sum_probs=31.7
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCceEEEecCCC
Q 019346 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (342)
Q Consensus 57 ~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~ 91 (342)
...++|+|.|-+|+++|..|++.|++|++.|....
T Consensus 5 ~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~ 39 (445)
T PRK04308 5 NKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELK 39 (445)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 34799999999999999999999999999997654
No 432
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=93.11 E-value=0.19 Score=37.17 Aligned_cols=32 Identities=28% Similarity=0.412 Sum_probs=28.4
Q ss_pred EEEECCCHHHHHHHHHHHHcCCceEEEecCCC
Q 019346 60 VVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (342)
Q Consensus 60 v~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~ 91 (342)
|+|+|.|..|...|..|.+.+.+|+++|..+.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~ 32 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPE 32 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcH
Confidence 79999999999999999997779999999864
No 433
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=93.10 E-value=0.28 Score=34.21 Aligned_cols=34 Identities=44% Similarity=0.541 Sum_probs=29.9
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHc-CCceEEEec
Q 019346 55 SKPLKVVIAGAGLAGLSTAKYLADA-GHKPLLLEA 88 (342)
Q Consensus 55 ~~~~dv~IiG~G~~G~~~A~~l~~~-g~~v~vle~ 88 (342)
....+++|+|+|..|..+|..|.+. +.+|.++++
T Consensus 21 ~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 21 LKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 3456899999999999999999998 578999988
No 434
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=93.09 E-value=0.15 Score=45.65 Aligned_cols=35 Identities=31% Similarity=0.405 Sum_probs=31.8
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCC-ceEEEecCC
Q 019346 56 KPLKVVIAGAGLAGLSTAKYLADAGH-KPLLLEARD 90 (342)
Q Consensus 56 ~~~dv~IiG~G~~G~~~A~~l~~~g~-~v~vle~~~ 90 (342)
....|+|||+|-.|..+|..|++.|. +++|+|...
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 45689999999999999999999997 899999875
No 435
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=93.03 E-value=0.13 Score=48.74 Aligned_cols=34 Identities=38% Similarity=0.572 Sum_probs=31.2
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCceEEEecCC
Q 019346 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (342)
Q Consensus 57 ~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~ 90 (342)
-.+|.|||+|.-|...|..|++.|++|+++|..+
T Consensus 5 ~~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~ 38 (503)
T TIGR02279 5 VVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRA 38 (503)
T ss_pred ccEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 3469999999999999999999999999999874
No 436
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=93.02 E-value=0.17 Score=45.44 Aligned_cols=35 Identities=31% Similarity=0.450 Sum_probs=32.0
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCC-ceEEEecCC
Q 019346 56 KPLKVVIAGAGLAGLSTAKYLADAGH-KPLLLEARD 90 (342)
Q Consensus 56 ~~~dv~IiG~G~~G~~~A~~l~~~g~-~v~vle~~~ 90 (342)
...+|+|||+|-.|..+|..|++.|. +++++|...
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY 58 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence 45689999999999999999999998 899999864
No 437
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.01 E-value=0.15 Score=48.29 Aligned_cols=33 Identities=27% Similarity=0.468 Sum_probs=30.2
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCceEEEecC
Q 019346 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (342)
Q Consensus 57 ~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~ 89 (342)
...|+|+|.|.+|++++..|.+.|.+|++.|.+
T Consensus 12 ~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~ 44 (488)
T PRK03369 12 GAPVLVAGAGVTGRAVLAALTRFGARPTVCDDD 44 (488)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 347999999999999999999999999999965
No 438
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=92.99 E-value=0.2 Score=41.32 Aligned_cols=35 Identities=23% Similarity=0.395 Sum_probs=31.5
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCceEEEecCC
Q 019346 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (342)
Q Consensus 56 ~~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~ 90 (342)
....++|+|.|-.|..+|..|.+.|++|++.|.+.
T Consensus 27 ~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~ 61 (200)
T cd01075 27 EGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINE 61 (200)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 44689999999999999999999999999998753
No 439
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=92.99 E-value=0.14 Score=46.93 Aligned_cols=31 Identities=32% Similarity=0.565 Sum_probs=27.8
Q ss_pred eEEEECCCHHHHHHHHHHHHcCCceEEEecCC
Q 019346 59 KVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (342)
Q Consensus 59 dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~ 90 (342)
+|.|||.|..|+..|..++. |++|+++|...
T Consensus 2 kI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~ 32 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQ-NHEVVALDILP 32 (388)
T ss_pred EEEEECCCHHHHHHHHHHHh-CCcEEEEECCH
Confidence 69999999999999987775 99999999864
No 440
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=92.94 E-value=0.19 Score=41.86 Aligned_cols=36 Identities=42% Similarity=0.362 Sum_probs=32.1
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCC-ceEEEecCCC
Q 019346 56 KPLKVVIAGAGLAGLSTAKYLADAGH-KPLLLEARDV 91 (342)
Q Consensus 56 ~~~dv~IiG~G~~G~~~A~~l~~~g~-~v~vle~~~~ 91 (342)
....|+|||+|-.|..+|..|++.|. +++++|....
T Consensus 27 ~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~v 63 (212)
T PRK08644 27 KKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVV 63 (212)
T ss_pred hCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEe
Confidence 56689999999999999999999997 6999998644
No 441
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=92.93 E-value=0.14 Score=46.60 Aligned_cols=48 Identities=13% Similarity=0.171 Sum_probs=36.9
Q ss_pred HHHHHHhcCcEEEecceeeEEEEcCCCCEEEEEecCCcEEEcCEEEEccCHHh
Q 019346 278 IVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYLISSSFSY 330 (342)
Q Consensus 278 l~~~l~~~Gv~i~~~t~V~~I~~~~~g~~~~v~t~~G~~i~a~~VI~At~~~~ 330 (342)
+.+.+.+.|+++.. ..|++|..+ +. .|.+.+|+++.+|++|+||++..
T Consensus 60 ~~~~~~~~gv~~~~-~~v~~id~~-~~---~V~~~~g~~~~yD~LviAtG~~~ 107 (364)
T TIGR03169 60 LRRLARQAGARFVI-AEATGIDPD-RR---KVLLANRPPLSYDVLSLDVGSTT 107 (364)
T ss_pred HHHHHHhcCCEEEE-EEEEEEecc-cC---EEEECCCCcccccEEEEccCCCC
Confidence 44556667999876 589999863 22 37888888899999999998764
No 442
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=92.89 E-value=0.18 Score=44.69 Aligned_cols=33 Identities=39% Similarity=0.541 Sum_probs=29.6
Q ss_pred eEEEECCCHHHHHHHHHHHHcC--CceEEEecCCC
Q 019346 59 KVVIAGAGLAGLSTAKYLADAG--HKPLLLEARDV 91 (342)
Q Consensus 59 dv~IiG~G~~G~~~A~~l~~~g--~~v~vle~~~~ 91 (342)
+|+|||+|..|.++|+.|+..| .+|+++|....
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~ 36 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEE 36 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcc
Confidence 6999999999999999999998 47999998643
No 443
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=92.88 E-value=0.16 Score=44.91 Aligned_cols=33 Identities=39% Similarity=0.516 Sum_probs=29.2
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCceEEEecCC
Q 019346 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (342)
Q Consensus 58 ~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~ 90 (342)
++|.|+|+|..|...|+.|++.|..|+++=+.+
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~ 33 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSR 33 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHH
Confidence 479999999999999999999997777777665
No 444
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=92.87 E-value=0.15 Score=44.40 Aligned_cols=32 Identities=34% Similarity=0.407 Sum_probs=29.9
Q ss_pred eEEEECCCHHHHHHHHHHHHcCCceEEEecCC
Q 019346 59 KVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (342)
Q Consensus 59 dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~ 90 (342)
+|.|||.|.-|.+.|..|.+.|++|++++++.
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~ 33 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRE 33 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECCH
Confidence 69999999999999999999999999999864
No 445
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=92.84 E-value=0.14 Score=49.45 Aligned_cols=48 Identities=13% Similarity=0.164 Sum_probs=40.1
Q ss_pred HHHHhcCcEEEecceeeEEEEcCCCCEEEEEecCCcEEEcCEEEEccCHHhh
Q 019346 280 EHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYLISSSFSYL 331 (342)
Q Consensus 280 ~~l~~~Gv~i~~~t~V~~I~~~~~g~~~~v~t~~G~~i~a~~VI~At~~~~~ 331 (342)
+..+++|++++++.+|++|.++ + + .|++..|.++.+|++|+||+.+..
T Consensus 67 dwy~~~~i~L~~~~~v~~idr~-~-k--~V~t~~g~~~~YDkLilATGS~pf 114 (793)
T COG1251 67 DWYEENGITLYTGEKVIQIDRA-N-K--VVTTDAGRTVSYDKLIIATGSYPF 114 (793)
T ss_pred hhHHHcCcEEEcCCeeEEeccC-c-c--eEEccCCcEeecceeEEecCcccc
Confidence 3447789999999999999863 3 3 388999999999999999998853
No 446
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=92.84 E-value=0.15 Score=48.43 Aligned_cols=33 Identities=21% Similarity=0.265 Sum_probs=30.6
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCceEEEecCC
Q 019346 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (342)
Q Consensus 58 ~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~ 90 (342)
.+|.|||+|.-|...|..|++.|++|+++|..+
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~ 37 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGIDVAVFDPHP 37 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 379999999999999999999999999999864
No 447
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=92.73 E-value=0.19 Score=42.06 Aligned_cols=33 Identities=30% Similarity=0.375 Sum_probs=29.5
Q ss_pred CeEEEEC-CCHHHHHHHHHHHHcCCceEEEecCC
Q 019346 58 LKVVIAG-AGLAGLSTAKYLADAGHKPLLLEARD 90 (342)
Q Consensus 58 ~dv~IiG-~G~~G~~~A~~l~~~g~~v~vle~~~ 90 (342)
++|.||| +|.-|.+.|..|++.|++|+++.+++
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~ 34 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDL 34 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCH
Confidence 3699997 79999999999999999999998754
No 448
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=92.70 E-value=0.2 Score=42.57 Aligned_cols=42 Identities=33% Similarity=0.446 Sum_probs=34.6
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCC-ceEEEecCCCCCccee
Q 019346 56 KPLKVVIAGAGLAGLSTAKYLADAGH-KPLLLEARDVLGGKIA 97 (342)
Q Consensus 56 ~~~dv~IiG~G~~G~~~A~~l~~~g~-~v~vle~~~~~gG~~~ 97 (342)
...+|+|||+|-.|..+|..|++.|. +++++|....--.+..
T Consensus 23 ~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~ 65 (240)
T TIGR02355 23 KASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQ 65 (240)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcccccCcc
Confidence 45689999999999999999999996 8999998765444433
No 449
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=92.69 E-value=0.43 Score=45.07 Aligned_cols=36 Identities=19% Similarity=0.220 Sum_probs=30.0
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCC-ceEEEecCCC
Q 019346 56 KPLKVVIAGAGLAGLSTAKYLADAGH-KPLLLEARDV 91 (342)
Q Consensus 56 ~~~dv~IiG~G~~G~~~A~~l~~~g~-~v~vle~~~~ 91 (342)
...+|+|||+|.+|+-+|..+.+.|. +|++++....
T Consensus 280 ~gk~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~~~ 316 (471)
T PRK12810 280 KGKHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIMPM 316 (471)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCeEEEccccCC
Confidence 34689999999999999999998875 7887776554
No 450
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=92.67 E-value=0.22 Score=44.31 Aligned_cols=35 Identities=17% Similarity=0.167 Sum_probs=31.1
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCC-ceEEEecCCC
Q 019346 57 PLKVVIAGAGLAGLSTAKYLADAGH-KPLLLEARDV 91 (342)
Q Consensus 57 ~~dv~IiG~G~~G~~~A~~l~~~g~-~v~vle~~~~ 91 (342)
..+|+|||+|..|.+.|+.++..|+ +|+++|..+.
T Consensus 6 ~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~ 41 (321)
T PTZ00082 6 RRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKN 41 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCc
Confidence 3589999999999999999999996 8999997654
No 451
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=92.64 E-value=0.21 Score=39.62 Aligned_cols=33 Identities=27% Similarity=0.383 Sum_probs=28.7
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCceEEEecCC
Q 019346 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (342)
Q Consensus 58 ~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~ 90 (342)
.+|.|||-|..|...|..|++.|++|+++++..
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~ 34 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSP 34 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSH
T ss_pred CEEEEEchHHHHHHHHHHHHhcCCeEEeeccch
Confidence 479999999999999999999999999999764
No 452
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=92.64 E-value=0.17 Score=47.65 Aligned_cols=36 Identities=22% Similarity=0.278 Sum_probs=31.5
Q ss_pred CCCeEEEECCCHHHHH-HHHHHHHcCCceEEEecCCC
Q 019346 56 KPLKVVIAGAGLAGLS-TAKYLADAGHKPLLLEARDV 91 (342)
Q Consensus 56 ~~~dv~IiG~G~~G~~-~A~~l~~~g~~v~vle~~~~ 91 (342)
....|.|||.|-+|++ +|..|.+.|++|++.|.+..
T Consensus 6 ~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~ 42 (461)
T PRK00421 6 RIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKES 42 (461)
T ss_pred CCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCC
Confidence 4457999999999999 59999999999999997643
No 453
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=92.55 E-value=0.23 Score=41.03 Aligned_cols=36 Identities=36% Similarity=0.471 Sum_probs=32.1
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCC-ceEEEecCCC
Q 019346 56 KPLKVVIAGAGLAGLSTAKYLADAGH-KPLLLEARDV 91 (342)
Q Consensus 56 ~~~dv~IiG~G~~G~~~A~~l~~~g~-~v~vle~~~~ 91 (342)
.+..|+|||.|-.|..+|..|++.|. +++++|....
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~v 56 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHV 56 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEE
Confidence 56799999999999999999999997 8999998643
No 454
>PRK06223 malate dehydrogenase; Reviewed
Probab=92.53 E-value=0.21 Score=44.21 Aligned_cols=33 Identities=30% Similarity=0.366 Sum_probs=29.8
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCC-ceEEEecCC
Q 019346 58 LKVVIAGAGLAGLSTAKYLADAGH-KPLLLEARD 90 (342)
Q Consensus 58 ~dv~IiG~G~~G~~~A~~l~~~g~-~v~vle~~~ 90 (342)
.+|+|||+|..|...|+.++..|+ +|+++|...
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~ 36 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVE 36 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCC
Confidence 589999999999999999999875 999999854
No 455
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=92.50 E-value=0.24 Score=43.61 Aligned_cols=35 Identities=20% Similarity=0.311 Sum_probs=32.2
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCceEEEecCC
Q 019346 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (342)
Q Consensus 56 ~~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~ 90 (342)
...+++|||.|..|..+|..|.+.|.+|++++++.
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~ 185 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKALGANVTVGARKS 185 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 45799999999999999999999999999999874
No 456
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=92.46 E-value=0.2 Score=47.26 Aligned_cols=35 Identities=31% Similarity=0.478 Sum_probs=32.0
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCceEEEecCC
Q 019346 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (342)
Q Consensus 56 ~~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~ 90 (342)
...+|+|+|+|..|+.++..+...|.+|+++|.+.
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~ 197 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRP 197 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 45799999999999999999999999999999875
No 457
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=92.46 E-value=0.24 Score=42.31 Aligned_cols=36 Identities=33% Similarity=0.518 Sum_probs=32.0
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCC-ceEEEecCCC
Q 019346 56 KPLKVVIAGAGLAGLSTAKYLADAGH-KPLLLEARDV 91 (342)
Q Consensus 56 ~~~dv~IiG~G~~G~~~A~~l~~~g~-~v~vle~~~~ 91 (342)
...+|+|||+|-.|..+|..|++.|. +++|+|....
T Consensus 31 ~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~v 67 (245)
T PRK05690 31 KAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTV 67 (245)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEE
Confidence 46799999999999999999999996 8999997644
No 458
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=92.44 E-value=0.24 Score=39.78 Aligned_cols=33 Identities=42% Similarity=0.403 Sum_probs=29.8
Q ss_pred eEEEECCCHHHHHHHHHHHHcCC-ceEEEecCCC
Q 019346 59 KVVIAGAGLAGLSTAKYLADAGH-KPLLLEARDV 91 (342)
Q Consensus 59 dv~IiG~G~~G~~~A~~l~~~g~-~v~vle~~~~ 91 (342)
+|+|||+|-.|..+|..|++.|. +++++|....
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~v 34 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVV 34 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEE
Confidence 48999999999999999999997 6999998654
No 459
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=92.43 E-value=0.17 Score=48.02 Aligned_cols=34 Identities=41% Similarity=0.550 Sum_probs=31.3
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCceEEEecCCC
Q 019346 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (342)
Q Consensus 58 ~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~ 91 (342)
..|.|||+|.-|...|..|++.|+.|+++|....
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e 41 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAG 41 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 4699999999999999999999999999998754
No 460
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=92.42 E-value=0.17 Score=38.81 Aligned_cols=32 Identities=28% Similarity=0.363 Sum_probs=27.8
Q ss_pred EEEECCCHHHHHHHHHHHHcCCceEEEecCCC
Q 019346 60 VVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (342)
Q Consensus 60 v~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~ 91 (342)
++|+|+|..+.+.|..+...|++|+|+|-++.
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e 32 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRPE 32 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-CC
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCcc
Confidence 58999999999999999999999999998854
No 461
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=92.38 E-value=0.57 Score=44.41 Aligned_cols=37 Identities=24% Similarity=0.175 Sum_probs=31.4
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcC-CceEEEecCCCC
Q 019346 56 KPLKVVIAGAGLAGLSTAKYLADAG-HKPLLLEARDVL 92 (342)
Q Consensus 56 ~~~dv~IiG~G~~G~~~A~~l~~~g-~~v~vle~~~~~ 92 (342)
....|+|||||..|+-+|..+.+.| .+|+++|..+..
T Consensus 282 ~gk~VvViGgG~~g~d~a~~a~~~ga~~V~vv~~~~~~ 319 (485)
T TIGR01317 282 KGKKVVVIGGGDTGADCVGTSLRHGAASVHQFEIMPKP 319 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEEecCCC
Confidence 4568999999999999998888887 479999987654
No 462
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=92.37 E-value=0.24 Score=38.33 Aligned_cols=38 Identities=29% Similarity=0.338 Sum_probs=32.0
Q ss_pred eEEEECCCHHHHHHHHHHHHcCC-ceEEEecCCCCCcce
Q 019346 59 KVVIAGAGLAGLSTAKYLADAGH-KPLLLEARDVLGGKI 96 (342)
Q Consensus 59 dv~IiG~G~~G~~~A~~l~~~g~-~v~vle~~~~~gG~~ 96 (342)
+|+|||.|-.|...|..|++.|. +++++|....--...
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl 39 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTVELSNL 39 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCcCcchh
Confidence 48999999999999999999997 799999875543333
No 463
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=92.36 E-value=0.3 Score=43.37 Aligned_cols=35 Identities=29% Similarity=0.425 Sum_probs=30.9
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCC--ceEEEecCC
Q 019346 56 KPLKVVIAGAGLAGLSTAKYLADAGH--KPLLLEARD 90 (342)
Q Consensus 56 ~~~dv~IiG~G~~G~~~A~~l~~~g~--~v~vle~~~ 90 (342)
...+|.|||+|-.|.++|+.|+..|. .++++|.+.
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~ 41 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINK 41 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 34699999999999999999999886 799999754
No 464
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=92.29 E-value=0.17 Score=50.32 Aligned_cols=34 Identities=21% Similarity=0.269 Sum_probs=31.6
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCceEEEecCCC
Q 019346 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (342)
Q Consensus 58 ~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~ 91 (342)
..|.|||+|.-|...|..++..|++|+++|..+.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~ 347 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQK 347 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHH
Confidence 4799999999999999999999999999998753
No 465
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=92.28 E-value=0.25 Score=45.43 Aligned_cols=36 Identities=25% Similarity=0.333 Sum_probs=32.1
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCceEEEecCCC
Q 019346 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (342)
Q Consensus 56 ~~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~ 91 (342)
....|+|+|+|..|+.+|..+...|.+|+++|..+.
T Consensus 201 ~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~ 236 (413)
T cd00401 201 AGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPI 236 (413)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChh
Confidence 455899999999999999999999999999987653
No 466
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=92.27 E-value=0.27 Score=46.17 Aligned_cols=37 Identities=16% Similarity=0.137 Sum_probs=32.8
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCceEEEecCCC
Q 019346 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (342)
Q Consensus 55 ~~~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~ 91 (342)
-...+|+|||+|.+|+-.|..|++.+.+|+++.+...
T Consensus 202 ~~gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~~ 238 (461)
T PLN02172 202 FKNEVVVVIGNFASGADISRDIAKVAKEVHIASRASE 238 (461)
T ss_pred cCCCEEEEECCCcCHHHHHHHHHHhCCeEEEEEeecc
Confidence 3567999999999999999999999999999988653
No 467
>PRK08328 hypothetical protein; Provisional
Probab=92.25 E-value=0.23 Score=42.01 Aligned_cols=36 Identities=39% Similarity=0.541 Sum_probs=31.6
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCC-ceEEEecCCC
Q 019346 56 KPLKVVIAGAGLAGLSTAKYLADAGH-KPLLLEARDV 91 (342)
Q Consensus 56 ~~~dv~IiG~G~~G~~~A~~l~~~g~-~v~vle~~~~ 91 (342)
....|+|||+|-.|..+|..|++.|. +++++|....
T Consensus 26 ~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~v 62 (231)
T PRK08328 26 KKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTP 62 (231)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcc
Confidence 45689999999999999999999996 7999987654
No 468
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=92.12 E-value=0.3 Score=40.03 Aligned_cols=34 Identities=29% Similarity=0.406 Sum_probs=30.3
Q ss_pred CCCeEEEECC-CHHHHHHHHHHHHcCCceEEEecC
Q 019346 56 KPLKVVIAGA-GLAGLSTAKYLADAGHKPLLLEAR 89 (342)
Q Consensus 56 ~~~dv~IiG~-G~~G~~~A~~l~~~g~~v~vle~~ 89 (342)
...+++|+|| |..|..+|..|++.|.+|+++.++
T Consensus 27 ~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~ 61 (194)
T cd01078 27 KGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRD 61 (194)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 4568999997 999999999999999999999765
No 469
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.12 E-value=0.23 Score=46.92 Aligned_cols=32 Identities=28% Similarity=0.513 Sum_probs=29.7
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCceEEEecC
Q 019346 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (342)
Q Consensus 58 ~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~ 89 (342)
..|.|+|.|-+|+++|..|.+.|.+|++.|+.
T Consensus 16 ~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~ 47 (473)
T PRK00141 16 GRVLVAGAGVSGRGIAAMLSELGCDVVVADDN 47 (473)
T ss_pred CeEEEEccCHHHHHHHHHHHHCCCEEEEECCC
Confidence 46999999999999999999999999999964
No 470
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=92.09 E-value=0.065 Score=48.39 Aligned_cols=34 Identities=41% Similarity=0.498 Sum_probs=29.2
Q ss_pred CeEEEECCCHHHHHHHHHHHHc--------------CCceEEEecCCC
Q 019346 58 LKVVIAGAGLAGLSTAKYLADA--------------GHKPLLLEARDV 91 (342)
Q Consensus 58 ~dv~IiG~G~~G~~~A~~l~~~--------------g~~v~vle~~~~ 91 (342)
-.+||||||++|+..|.+|+.. -.+|+++|+.+.
T Consensus 219 Lh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~ 266 (491)
T KOG2495|consen 219 LHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADH 266 (491)
T ss_pred EEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchh
Confidence 4799999999999999999762 248999999884
No 471
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=92.01 E-value=0.19 Score=49.84 Aligned_cols=35 Identities=20% Similarity=0.265 Sum_probs=31.7
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCceEEEecCC
Q 019346 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (342)
Q Consensus 56 ~~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~ 90 (342)
.-..|.|||||.-|...|+.++..|++|+++|...
T Consensus 312 ~i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~ 346 (714)
T TIGR02437 312 DVKQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQ 346 (714)
T ss_pred ccceEEEECCchHHHHHHHHHHhCCCeEEEEeCCH
Confidence 33479999999999999999999999999999875
No 472
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=91.96 E-value=0.28 Score=41.41 Aligned_cols=41 Identities=37% Similarity=0.439 Sum_probs=33.9
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCC-ceEEEecCCCCCcce
Q 019346 56 KPLKVVIAGAGLAGLSTAKYLADAGH-KPLLLEARDVLGGKI 96 (342)
Q Consensus 56 ~~~dv~IiG~G~~G~~~A~~l~~~g~-~v~vle~~~~~gG~~ 96 (342)
....|+|||+|-.|..+|..|++.|. +++++|....--...
T Consensus 20 ~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL 61 (228)
T cd00757 20 KNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNL 61 (228)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCccc
Confidence 45699999999999999999999996 899998765433333
No 473
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=91.90 E-value=0.41 Score=44.02 Aligned_cols=36 Identities=25% Similarity=0.286 Sum_probs=33.0
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCceEEEecCCCC
Q 019346 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVL 92 (342)
Q Consensus 57 ~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~~ 92 (342)
...|++||+|..|+-+|..|...+++|++++..+.+
T Consensus 213 ~~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~ 248 (478)
T KOG1336|consen 213 GGKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWL 248 (478)
T ss_pred CceEEEECchHHHHHHHHHHHhcCceEEEEccCccc
Confidence 568999999999999999999999999999998753
No 474
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=91.90 E-value=0.26 Score=43.59 Aligned_cols=32 Identities=28% Similarity=0.535 Sum_probs=28.4
Q ss_pred eEEEECCCHHHHHHHHHHHHcCC--ceEEEecCC
Q 019346 59 KVVIAGAGLAGLSTAKYLADAGH--KPLLLEARD 90 (342)
Q Consensus 59 dv~IiG~G~~G~~~A~~l~~~g~--~v~vle~~~ 90 (342)
+|.|||+|..|.++|+.|+..+. .++++|...
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~ 34 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNE 34 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 58999999999999999998875 799999753
No 475
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=91.86 E-value=0.34 Score=42.45 Aligned_cols=35 Identities=29% Similarity=0.292 Sum_probs=30.6
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCc-eEEEecCC
Q 019346 56 KPLKVVIAGAGLAGLSTAKYLADAGHK-PLLLEARD 90 (342)
Q Consensus 56 ~~~dv~IiG~G~~G~~~A~~l~~~g~~-v~vle~~~ 90 (342)
....++|+|||-+|.++|+.|++.|.+ |+|+.++.
T Consensus 125 ~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~ 160 (289)
T PRK12548 125 KGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKD 160 (289)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 345899999999999999999999986 99998764
No 476
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=91.81 E-value=0.31 Score=42.67 Aligned_cols=35 Identities=17% Similarity=0.333 Sum_probs=31.9
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCceEEEecCC
Q 019346 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (342)
Q Consensus 56 ~~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~ 90 (342)
....++|||.|-.|.+.|..|...|.+|+++++..
T Consensus 150 ~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~ 184 (287)
T TIGR02853 150 HGSNVMVLGFGRTGMTIARTFSALGARVFVGARSS 184 (287)
T ss_pred CCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 45689999999999999999999999999999864
No 477
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.78 E-value=0.22 Score=46.70 Aligned_cols=31 Identities=19% Similarity=0.290 Sum_probs=28.4
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCceEEEecC
Q 019346 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (342)
Q Consensus 58 ~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~ 89 (342)
.+|+|+|.|.+|.++|..|.+ |.+|++.|.+
T Consensus 7 ~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~ 37 (454)
T PRK01368 7 QKIGVFGLGKTGISVYEELQN-KYDVIVYDDL 37 (454)
T ss_pred CEEEEEeecHHHHHHHHHHhC-CCEEEEECCC
Confidence 479999999999999999995 9999999964
No 478
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=91.75 E-value=0.28 Score=41.57 Aligned_cols=38 Identities=29% Similarity=0.341 Sum_probs=31.8
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcC-----------CceEEEecCCCC
Q 019346 55 SKPLKVVIAGAGLAGLSTAKYLADAG-----------HKPLLLEARDVL 92 (342)
Q Consensus 55 ~~~~dv~IiG~G~~G~~~A~~l~~~g-----------~~v~vle~~~~~ 92 (342)
....+|+|||+|-.|..++..|++.| .+++|+|....-
T Consensus 9 ~~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~Ve 57 (244)
T TIGR03736 9 SRPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTVS 57 (244)
T ss_pred hCCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEEc
Confidence 46779999999999999999999963 288999876543
No 479
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=91.74 E-value=0.31 Score=42.25 Aligned_cols=35 Identities=26% Similarity=0.224 Sum_probs=30.9
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCceEEEecCC
Q 019346 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (342)
Q Consensus 56 ~~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~ 90 (342)
....++|+|+|-+|.++|+.|++.|.+|+++.+..
T Consensus 116 ~~k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~ 150 (270)
T TIGR00507 116 PNQRVLIIGAGGAARAVALPLLKADCNVIIANRTV 150 (270)
T ss_pred cCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 34589999999999999999999999999998753
No 480
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.62 E-value=0.24 Score=46.45 Aligned_cols=34 Identities=26% Similarity=0.479 Sum_probs=30.8
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCceEEEecCC
Q 019346 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (342)
Q Consensus 57 ~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~ 90 (342)
+--|+|||-|-+|+++|..|.+.|++|++.|...
T Consensus 6 ~~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~ 39 (448)
T PRK03803 6 DGLHIVVGLGKTGLSVVRFLARQGIPFAVMDSRE 39 (448)
T ss_pred CCeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCC
Confidence 3469999999999999999999999999999764
No 481
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=91.56 E-value=0.24 Score=43.66 Aligned_cols=31 Identities=32% Similarity=0.409 Sum_probs=28.2
Q ss_pred EEEECCCHHHHHHHHHHHHcCC-ceEEEecCC
Q 019346 60 VVIAGAGLAGLSTAKYLADAGH-KPLLLEARD 90 (342)
Q Consensus 60 v~IiG~G~~G~~~A~~l~~~g~-~v~vle~~~ 90 (342)
|.|||+|..|..+|+.|+..|+ +|+++|..+
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e 32 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVE 32 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCC
Confidence 5799999999999999998876 999999864
No 482
>PLN02256 arogenate dehydrogenase
Probab=91.56 E-value=0.51 Score=41.69 Aligned_cols=35 Identities=34% Similarity=0.404 Sum_probs=31.5
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCceEEEecCC
Q 019346 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (342)
Q Consensus 56 ~~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~ 90 (342)
...+|.|||.|..|-+.|..|.+.|++|++++.+.
T Consensus 35 ~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~ 69 (304)
T PLN02256 35 RKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSD 69 (304)
T ss_pred CCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECcc
Confidence 55689999999999999999999999999998764
No 483
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=91.51 E-value=0.34 Score=43.85 Aligned_cols=38 Identities=34% Similarity=0.549 Sum_probs=33.4
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHcCC---ceEEEecCCC
Q 019346 54 PSKPLKVVIAGAGLAGLSTAKYLADAGH---KPLLLEARDV 91 (342)
Q Consensus 54 ~~~~~dv~IiG~G~~G~~~A~~l~~~g~---~v~vle~~~~ 91 (342)
.-.+.+|+|.|+|.+|+++|..|...|. +|.++|+...
T Consensus 196 ~l~d~kiv~~GAGAAgiaia~~l~~~g~~~~~i~~~D~~G~ 236 (432)
T COG0281 196 KLKDQKIVINGAGAAGIAIADLLVAAGVKEENIFVVDRKGL 236 (432)
T ss_pred CccceEEEEeCCcHHHHHHHHHHHHhCCCcccEEEEecCCc
Confidence 3467799999999999999999999986 7999998854
No 484
>PTZ00117 malate dehydrogenase; Provisional
Probab=91.50 E-value=0.37 Score=42.94 Aligned_cols=35 Identities=23% Similarity=0.318 Sum_probs=30.9
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcC-CceEEEecCC
Q 019346 56 KPLKVVIAGAGLAGLSTAKYLADAG-HKPLLLEARD 90 (342)
Q Consensus 56 ~~~dv~IiG~G~~G~~~A~~l~~~g-~~v~vle~~~ 90 (342)
+..+|+|||+|..|.+.|+.|+..| ..++++|...
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~ 39 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIK 39 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCC
Confidence 4568999999999999999999988 5899999864
No 485
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=91.41 E-value=0.28 Score=46.03 Aligned_cols=33 Identities=24% Similarity=0.545 Sum_probs=30.5
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCceEEEecCC
Q 019346 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (342)
Q Consensus 58 ~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~ 90 (342)
++|+|+|+|..|...|..|.+.|++|+++|++.
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~ 33 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDE 33 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCH
Confidence 379999999999999999999999999999854
No 486
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=91.26 E-value=0.36 Score=47.54 Aligned_cols=35 Identities=26% Similarity=0.325 Sum_probs=30.9
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCC-ceEEEecCC
Q 019346 56 KPLKVVIAGAGLAGLSTAKYLADAGH-KPLLLEARD 90 (342)
Q Consensus 56 ~~~dv~IiG~G~~G~~~A~~l~~~g~-~v~vle~~~ 90 (342)
...+|+|||+|.+|+-+|..|.+.|. +|+|+++++
T Consensus 322 ~gk~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~ 357 (652)
T PRK12814 322 PGKKVVVIGGGNTAIDAARTALRLGAESVTILYRRT 357 (652)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 45699999999999999999999986 699998765
No 487
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=91.24 E-value=0.26 Score=49.15 Aligned_cols=34 Identities=32% Similarity=0.462 Sum_probs=31.4
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCceEEEecCCC
Q 019346 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (342)
Q Consensus 58 ~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~ 91 (342)
..|.|||+|.-|...|+.++..|++|+++|..+.
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~ 369 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPA 369 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHH
Confidence 4799999999999999999999999999998753
No 488
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=91.23 E-value=0.3 Score=42.86 Aligned_cols=33 Identities=33% Similarity=0.408 Sum_probs=30.7
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCceEEEecCC
Q 019346 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (342)
Q Consensus 58 ~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~ 90 (342)
..|.|||||.-|-..|+.++..|+.|+++|.+.
T Consensus 4 ~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~ 36 (307)
T COG1250 4 KKVAVIGAGVMGAGIAAVFALAGYDVVLKDISP 36 (307)
T ss_pred cEEEEEcccchhHHHHHHHhhcCCceEEEeCCH
Confidence 579999999999999999999889999999984
No 489
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=91.17 E-value=0.42 Score=40.75 Aligned_cols=37 Identities=24% Similarity=0.343 Sum_probs=33.2
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCceEEEecCCC
Q 019346 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (342)
Q Consensus 55 ~~~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~~ 91 (342)
.....++|+|+|..+...|..+...|++|+|+|.++.
T Consensus 98 ~p~~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~ 134 (246)
T TIGR02964 98 PPAPHVVLFGAGHVGRALVRALAPLPCRVTWVDSREA 134 (246)
T ss_pred CCCCEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcc
Confidence 4556999999999999999999999999999997754
No 490
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.16 E-value=0.29 Score=46.57 Aligned_cols=33 Identities=27% Similarity=0.497 Sum_probs=30.5
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCceEEEecCC
Q 019346 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (342)
Q Consensus 58 ~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~ 90 (342)
..|.|||.|-+|+++|..|.+.|++|++.|.+.
T Consensus 8 ~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~ 40 (498)
T PRK02006 8 PMVLVLGLGESGLAMARWCARHGARLRVADTRE 40 (498)
T ss_pred CEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCC
Confidence 479999999999999999999999999999754
No 491
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=91.15 E-value=0.36 Score=39.43 Aligned_cols=53 Identities=23% Similarity=0.379 Sum_probs=38.5
Q ss_pred HHHHHHHhcCcEEEecceeeEEEEcCCC----C--EEEEEecCCcEEEcCEEEEccCHH
Q 019346 277 PIVEHIQSLGGEVRLNSRVQKIELNDDG----T--VKNFLLTNGNVIDGDAYLISSSFS 329 (342)
Q Consensus 277 ~l~~~l~~~Gv~i~~~t~V~~I~~~~~g----~--~~~v~t~~G~~i~a~~VI~At~~~ 329 (342)
.+.+.+...++++++++.|.+|...... . .....+.++.++.+|+||+||+..
T Consensus 63 ~~~~~~~~~~v~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~ 121 (201)
T PF07992_consen 63 KLVDQLKNRGVEIRLNAKVVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSR 121 (201)
T ss_dssp HHHHHHHHHTHEEEHHHTEEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTEE
T ss_pred ccccccccceEEEeeccccccccccccccccCcccceeeccCCceEecCCeeeecCccc
Confidence 4666667779999999999999874331 1 111234556689999999999965
No 492
>PRK08223 hypothetical protein; Validated
Probab=91.13 E-value=0.34 Score=42.05 Aligned_cols=36 Identities=28% Similarity=0.198 Sum_probs=32.4
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCC-ceEEEecCCC
Q 019346 56 KPLKVVIAGAGLAGLSTAKYLADAGH-KPLLLEARDV 91 (342)
Q Consensus 56 ~~~dv~IiG~G~~G~~~A~~l~~~g~-~v~vle~~~~ 91 (342)
....|+|||+|-.|..+|..|++.|. +++++|-...
T Consensus 26 ~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~V 62 (287)
T PRK08223 26 RNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVF 62 (287)
T ss_pred hcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCc
Confidence 56799999999999999999999996 8999998755
No 493
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=90.98 E-value=0.44 Score=39.77 Aligned_cols=35 Identities=29% Similarity=0.430 Sum_probs=30.8
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCceEEEecC
Q 019346 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (342)
Q Consensus 55 ~~~~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~ 89 (342)
.....|+|||||-.++.=+..|++.|.+|+|+-..
T Consensus 23 ~~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~ 57 (223)
T PRK05562 23 SNKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKK 57 (223)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCC
Confidence 35668999999999999999999999999999643
No 494
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=90.97 E-value=0.49 Score=36.98 Aligned_cols=35 Identities=37% Similarity=0.369 Sum_probs=30.3
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcC-CceEEEecCC
Q 019346 56 KPLKVVIAGAGLAGLSTAKYLADAG-HKPLLLEARD 90 (342)
Q Consensus 56 ~~~dv~IiG~G~~G~~~A~~l~~~g-~~v~vle~~~ 90 (342)
...+++|||+|..|.+.|..|++.| .+|++++++.
T Consensus 18 ~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~ 53 (155)
T cd01065 18 KGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTL 53 (155)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCH
Confidence 3468999999999999999999986 7899998754
No 495
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=90.97 E-value=0.27 Score=43.17 Aligned_cols=32 Identities=28% Similarity=0.297 Sum_probs=29.7
Q ss_pred eEEEECCCHHHHHHHHHHHHcCCceEEEecCC
Q 019346 59 KVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (342)
Q Consensus 59 dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~ 90 (342)
+|.|||.|..|...|..|++.|++|++++++.
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~ 32 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGP 32 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 48899999999999999999999999999874
No 496
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=90.93 E-value=0.38 Score=39.57 Aligned_cols=37 Identities=38% Similarity=0.429 Sum_probs=32.6
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCC-ceEEEecCCCC
Q 019346 56 KPLKVVIAGAGLAGLSTAKYLADAGH-KPLLLEARDVL 92 (342)
Q Consensus 56 ~~~dv~IiG~G~~G~~~A~~l~~~g~-~v~vle~~~~~ 92 (342)
.+..|+|||.|-.|..+|..|++.|. +++++|....-
T Consensus 18 ~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~ve 55 (198)
T cd01485 18 RSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRLVS 55 (198)
T ss_pred hhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCcCC
Confidence 45799999999999999999999996 69999987553
No 497
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=90.89 E-value=0.48 Score=41.30 Aligned_cols=35 Identities=26% Similarity=0.269 Sum_probs=31.0
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcC-CceEEEecCC
Q 019346 56 KPLKVVIAGAGLAGLSTAKYLADAG-HKPLLLEARD 90 (342)
Q Consensus 56 ~~~dv~IiG~G~~G~~~A~~l~~~g-~~v~vle~~~ 90 (342)
....++|+|+|-+|.++|+.|++.| .+|+|+.+..
T Consensus 122 ~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~ 157 (278)
T PRK00258 122 KGKRILILGAGGAARAVILPLLDLGVAEITIVNRTV 157 (278)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence 4468999999999999999999999 6899998764
No 498
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.85 E-value=0.34 Score=44.97 Aligned_cols=33 Identities=30% Similarity=0.470 Sum_probs=30.2
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCceEEEecCC
Q 019346 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (342)
Q Consensus 58 ~dv~IiG~G~~G~~~A~~l~~~g~~v~vle~~~ 90 (342)
.+|+|||-|.+|+++|..|.+.|++|++.|.+.
T Consensus 4 ~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~ 36 (418)
T PRK00683 4 QRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSL 36 (418)
T ss_pred CeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 379999999999999999999999999999754
No 499
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=90.85 E-value=0.39 Score=40.49 Aligned_cols=41 Identities=27% Similarity=0.301 Sum_probs=34.3
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCC-ceEEEecCCCCCcce
Q 019346 56 KPLKVVIAGAGLAGLSTAKYLADAGH-KPLLLEARDVLGGKI 96 (342)
Q Consensus 56 ~~~dv~IiG~G~~G~~~A~~l~~~g~-~v~vle~~~~~gG~~ 96 (342)
....|+|||.|-.|..+|..|++.|. +++++|.....-.++
T Consensus 10 ~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNl 51 (231)
T cd00755 10 RNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVVCVSNL 51 (231)
T ss_pred hCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEECchhh
Confidence 45689999999999999999999996 899999876544433
No 500
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=90.81 E-value=0.57 Score=46.60 Aligned_cols=34 Identities=29% Similarity=0.246 Sum_probs=30.8
Q ss_pred CCeEEEECCCHHHHHHHHHHH-HcCCceEEEecCC
Q 019346 57 PLKVVIAGAGLAGLSTAKYLA-DAGHKPLLLEARD 90 (342)
Q Consensus 57 ~~dv~IiG~G~~G~~~A~~l~-~~g~~v~vle~~~ 90 (342)
-..|.|||+|..|...|..++ ..|+.|+++|..+
T Consensus 309 i~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~ 343 (708)
T PRK11154 309 VNKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINP 343 (708)
T ss_pred ccEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCH
Confidence 357999999999999999999 7899999999864
Done!