Query 019348
Match_columns 342
No_of_seqs 164 out of 1222
Neff 10.7
Searched_HMMs 46136
Date Fri Mar 29 08:43:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019348.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019348hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1177 Long chain fatty acid 100.0 1.1E-45 2.3E-50 313.9 25.7 304 17-334 43-375 (596)
2 COG0318 CaiC Acyl-CoA syntheta 100.0 1.4E-43 3.1E-48 329.1 31.7 303 27-342 11-324 (534)
3 PTZ00342 acyl-CoA synthetase; 100.0 6.9E-44 1.5E-48 339.0 30.2 333 5-342 39-493 (746)
4 COG0365 Acs Acyl-coenzyme A sy 100.0 8.5E-44 1.8E-48 319.7 27.1 292 33-342 15-322 (528)
5 KOG1176 Acyl-CoA synthetase [L 100.0 1.2E-42 2.6E-47 313.9 30.0 296 39-342 28-332 (537)
6 PLN02246 4-coumarate--CoA liga 100.0 5.7E-42 1.2E-46 320.3 34.8 317 11-342 9-331 (537)
7 PRK07788 acyl-CoA synthetase; 100.0 2.5E-42 5.4E-47 323.5 31.5 300 27-342 49-355 (549)
8 PLN02574 4-coumarate--CoA liga 100.0 1.4E-41 3E-46 318.9 35.7 326 9-342 22-352 (560)
9 PLN02860 o-succinylbenzoate-Co 100.0 1.5E-42 3.3E-47 325.7 28.9 308 26-342 6-321 (563)
10 PLN02330 4-coumarate--CoA liga 100.0 2E-41 4.3E-46 317.2 34.7 322 9-342 12-336 (546)
11 KOG1179 Very long-chain acyl-C 100.0 6E-42 1.3E-46 296.9 28.7 306 27-342 77-388 (649)
12 PLN02614 long-chain acyl-CoA s 100.0 5.1E-42 1.1E-46 326.2 30.9 312 27-342 45-418 (666)
13 PLN02736 long-chain acyl-CoA s 100.0 7.1E-42 1.5E-46 325.8 30.6 310 27-342 44-408 (651)
14 PLN02861 long-chain-fatty-acid 100.0 1.2E-41 2.6E-46 323.8 30.5 311 27-342 43-415 (660)
15 PRK06334 long chain fatty acid 100.0 3.3E-41 7.1E-46 314.6 29.8 298 27-342 19-332 (539)
16 PRK08314 long-chain-fatty-acid 100.0 6.4E-41 1.4E-45 314.0 31.8 308 27-342 10-337 (546)
17 PLN02654 acetate-CoA ligase 100.0 5E-41 1.1E-45 319.9 31.2 313 27-342 87-432 (666)
18 PRK07529 AMP-binding domain pr 100.0 1.1E-40 2.5E-45 316.3 32.9 312 26-342 24-365 (632)
19 PRK07656 long-chain-fatty-acid 100.0 1.4E-40 3E-45 309.6 30.5 304 27-342 5-314 (513)
20 PRK08180 feruloyl-CoA synthase 100.0 2.5E-40 5.4E-45 313.3 31.7 305 27-342 39-372 (614)
21 TIGR02316 propion_prpE propion 100.0 2.4E-40 5.3E-45 314.2 30.9 309 27-342 51-386 (628)
22 PRK08279 long-chain-acyl-CoA s 100.0 1.9E-40 4.2E-45 313.8 29.2 304 24-342 34-345 (600)
23 PRK13295 cyclohexanecarboxylat 100.0 7.2E-40 1.6E-44 306.7 32.3 300 27-342 24-344 (547)
24 PLN03052 acetate--CoA ligase; 100.0 4.2E-40 9E-45 314.7 31.2 310 27-342 174-504 (728)
25 PRK08316 acyl-CoA synthetase; 100.0 5.7E-40 1.2E-44 306.2 31.2 305 27-342 11-319 (523)
26 PRK05605 long-chain-fatty-acid 100.0 1.3E-39 2.8E-44 306.8 33.5 312 27-342 32-368 (573)
27 PRK06187 long-chain-fatty-acid 100.0 1.2E-39 2.6E-44 303.8 31.9 304 26-342 5-313 (521)
28 TIGR02188 Ac_CoA_lig_AcsA acet 100.0 8.6E-40 1.9E-44 310.7 31.5 307 29-342 59-393 (625)
29 PRK07786 long-chain-fatty-acid 100.0 4.1E-39 8.8E-44 301.3 34.9 299 27-342 17-323 (542)
30 PF00501 AMP-binding: AMP-bind 100.0 5.3E-41 1.2E-45 304.4 21.4 292 33-342 1-310 (417)
31 PLN03102 acyl-activating enzym 100.0 1.5E-39 3.3E-44 305.9 31.5 306 25-342 12-331 (579)
32 PRK13382 acyl-CoA synthetase; 100.0 1.5E-39 3.4E-44 303.6 31.1 294 27-342 43-344 (537)
33 PTZ00237 acetyl-CoA synthetase 100.0 6.2E-40 1.3E-44 311.4 28.7 310 29-342 61-412 (647)
34 PRK04319 acetyl-CoA synthetase 100.0 2.3E-39 5.1E-44 304.6 31.6 303 27-342 42-355 (570)
35 TIGR02275 DHB_AMP_lig 2,3-dihy 100.0 2.6E-39 5.7E-44 301.7 31.6 298 27-342 23-331 (527)
36 PRK07638 acyl-CoA synthetase; 100.0 1.8E-39 3.8E-44 300.1 30.0 286 27-342 1-286 (487)
37 PRK05852 acyl-CoA synthetase; 100.0 2.4E-39 5.3E-44 302.4 31.1 312 15-342 6-327 (534)
38 KOG1256 Long-chain acyl-CoA sy 100.0 7.8E-40 1.7E-44 294.4 26.3 321 19-342 67-451 (691)
39 PRK05620 long-chain-fatty-acid 100.0 2.6E-39 5.7E-44 304.6 30.5 314 25-342 8-330 (576)
40 PRK00174 acetyl-CoA synthetase 100.0 4.8E-39 1E-43 306.1 32.5 307 30-342 70-402 (637)
41 TIGR03098 ligase_PEP_1 acyl-Co 100.0 4.7E-39 1E-43 299.4 31.6 301 28-342 1-307 (515)
42 PRK03640 O-succinylbenzoic aci 100.0 4.8E-39 1E-43 297.1 31.1 284 27-342 2-285 (483)
43 COG1022 FAA1 Long-chain acyl-C 100.0 8.5E-40 1.8E-44 297.8 25.5 307 27-342 16-384 (613)
44 PRK12583 acyl-CoA synthetase; 100.0 8.7E-39 1.9E-43 300.4 33.2 305 27-342 18-350 (558)
45 PLN02387 long-chain-fatty-acid 100.0 1.9E-39 4.2E-44 310.1 28.8 312 27-342 58-452 (696)
46 PRK06839 acyl-CoA synthetase; 100.0 2.1E-39 4.5E-44 300.5 28.2 287 28-342 3-295 (496)
47 PRK06018 putative acyl-CoA syn 100.0 6.2E-39 1.3E-43 300.1 31.2 313 22-342 5-325 (542)
48 PRK06145 acyl-CoA synthetase; 100.0 1.3E-38 2.7E-43 295.2 32.1 296 27-342 2-297 (497)
49 PRK12582 acyl-CoA synthetase; 100.0 4.8E-39 1E-43 305.1 29.9 306 26-342 48-384 (624)
50 PRK06087 short chain acyl-CoA 100.0 1.2E-38 2.6E-43 298.6 32.0 300 27-342 23-333 (547)
51 PRK07008 long-chain-fatty-acid 100.0 1.2E-38 2.5E-43 298.0 31.5 307 27-342 10-325 (539)
52 PRK06155 crotonobetaine/carnit 100.0 1.8E-38 3.9E-43 296.6 32.3 298 27-342 21-324 (542)
53 PRK06060 acyl-CoA synthetase; 100.0 4.3E-39 9.4E-44 309.5 28.8 286 28-342 5-293 (705)
54 PLN02430 long-chain-fatty-acid 100.0 1E-38 2.2E-43 303.4 30.9 312 27-342 42-415 (660)
55 PRK05857 acyl-CoA synthetase; 100.0 4.1E-39 8.9E-44 300.9 27.8 297 27-342 14-317 (540)
56 PRK12467 peptide synthase; Pro 100.0 3.7E-39 8.1E-44 351.3 31.4 287 27-342 3095-3384(3956)
57 PRK08315 AMP-binding domain pr 100.0 2.1E-38 4.6E-43 297.8 32.5 304 27-342 16-348 (559)
58 PRK09274 peptide synthase; Pro 100.0 5.1E-39 1.1E-43 301.5 28.0 295 27-342 6-322 (552)
59 PRK05677 long-chain-fatty-acid 100.0 4.3E-38 9.3E-43 295.6 34.0 312 27-342 24-358 (562)
60 PRK13383 acyl-CoA synthetase; 100.0 1.4E-38 3.1E-43 296.0 29.7 289 26-342 34-324 (516)
61 PRK10524 prpE propionyl-CoA sy 100.0 2.2E-38 4.7E-43 301.3 30.7 309 27-342 52-387 (629)
62 PRK13388 acyl-CoA synthetase; 100.0 3.3E-38 7.1E-43 294.8 31.4 289 27-342 3-295 (540)
63 TIGR03208 cyc_hxne_CoA_lg cycl 100.0 4.6E-38 9.9E-43 294.1 32.2 300 27-342 22-342 (538)
64 PRK08043 bifunctional acyl-[ac 100.0 8.2E-39 1.8E-43 307.8 27.7 295 27-342 204-511 (718)
65 PRK07470 acyl-CoA synthetase; 100.0 7.2E-38 1.6E-42 292.2 32.3 299 26-342 6-312 (528)
66 PTZ00216 acyl-CoA synthetase; 100.0 1.5E-38 3.2E-43 304.6 28.1 306 27-342 69-459 (700)
67 PRK10252 entF enterobactin syn 100.0 2.6E-38 5.6E-43 323.2 31.6 287 27-342 458-749 (1296)
68 PRK07798 acyl-CoA synthetase; 100.0 3E-38 6.5E-43 295.3 28.8 304 27-342 3-329 (533)
69 PRK07514 malonyl-CoA synthase; 100.0 8E-38 1.7E-42 290.4 31.4 294 27-342 3-301 (504)
70 COG1021 EntE Peptide arylation 100.0 2.4E-39 5.2E-44 269.6 18.6 298 27-341 28-336 (542)
71 PRK12467 peptide synthase; Pro 100.0 1.7E-38 3.7E-43 346.1 30.8 290 27-342 1574-1867(3956)
72 PRK06188 acyl-CoA synthetase; 100.0 1.2E-37 2.6E-42 290.4 32.0 296 27-342 12-313 (524)
73 TIGR03205 pimA dicarboxylate-- 100.0 2.9E-37 6.3E-42 288.8 34.4 311 27-342 21-344 (541)
74 PRK12316 peptide synthase; Pro 100.0 2.9E-38 6.3E-43 349.2 31.8 289 27-342 511-803 (5163)
75 PRK08008 caiC putative crotono 100.0 2.4E-37 5.3E-42 288.0 32.1 304 27-342 7-319 (517)
76 TIGR01734 D-ala-DACP-lig D-ala 100.0 6.7E-38 1.4E-42 290.8 28.1 288 28-342 1-291 (502)
77 PRK07059 Long-chain-fatty-acid 100.0 4.2E-37 9.1E-42 288.7 33.5 317 22-342 18-359 (557)
78 PRK06710 long-chain-fatty-acid 100.0 2.3E-37 5E-42 290.9 31.5 310 27-342 24-355 (563)
79 PRK03584 acetoacetyl-CoA synth 100.0 1.9E-37 4.1E-42 295.9 30.6 306 27-342 86-417 (655)
80 PRK07867 acyl-CoA synthetase; 100.0 3.8E-37 8.2E-42 286.8 31.6 292 27-342 5-297 (529)
81 PRK08633 2-acyl-glycerophospho 100.0 1.8E-37 3.9E-42 314.0 31.3 303 27-342 615-930 (1146)
82 PRK12316 peptide synthase; Pro 100.0 1.1E-37 2.3E-42 344.7 31.8 289 27-342 2003-2294(5163)
83 PRK10946 entE enterobactin syn 100.0 2.9E-37 6.4E-42 288.3 30.0 295 27-342 25-332 (536)
84 PRK06178 acyl-CoA synthetase; 100.0 1.2E-36 2.7E-41 286.2 34.1 327 9-339 15-356 (567)
85 PLN02479 acetate-CoA ligase 100.0 7.3E-37 1.6E-41 287.4 32.3 307 27-342 20-341 (567)
86 TIGR03443 alpha_am_amid L-amin 100.0 1.4E-37 3E-42 319.2 29.4 304 27-342 236-562 (1389)
87 TIGR02262 benz_CoA_lig benzoat 100.0 1.1E-36 2.5E-41 282.8 32.2 298 29-342 6-310 (508)
88 PRK12492 long-chain-fatty-acid 100.0 1.3E-36 2.8E-41 285.5 32.6 312 27-342 24-365 (562)
89 PRK09088 acyl-CoA synthetase; 100.0 5E-37 1.1E-41 283.9 28.9 279 35-342 3-283 (488)
90 PRK05691 peptide synthase; Val 100.0 1.6E-37 3.5E-42 341.1 29.7 287 27-342 3720-4016(4334)
91 PRK04813 D-alanine--poly(phosp 100.0 8.5E-37 1.8E-41 283.5 29.6 289 27-342 2-293 (503)
92 PRK07769 long-chain-fatty-acid 100.0 2.1E-37 4.5E-42 294.5 25.9 289 27-342 21-344 (631)
93 TIGR01217 ac_ac_CoA_syn acetoa 100.0 1.8E-36 3.9E-41 288.2 31.0 307 27-342 87-418 (652)
94 PRK06164 acyl-CoA synthetase; 100.0 1.4E-36 3E-41 284.3 29.6 302 27-342 10-326 (540)
95 PRK12476 putative fatty-acid-- 100.0 2.6E-37 5.7E-42 292.7 24.8 294 19-342 28-355 (612)
96 PRK05691 peptide synthase; Val 100.0 6.2E-37 1.4E-41 336.5 31.0 287 27-342 1131-1421(4334)
97 PRK08162 acyl-CoA synthetase; 100.0 5.7E-36 1.2E-40 280.5 32.8 305 26-342 17-327 (545)
98 PRK08751 putative long-chain f 100.0 5.3E-36 1.1E-40 281.6 32.3 311 26-342 24-361 (560)
99 PRK07868 acyl-CoA synthetase; 100.0 3.1E-36 6.8E-41 297.0 30.8 304 27-342 447-751 (994)
100 PRK06814 acylglycerophosphoeth 100.0 3.4E-36 7.5E-41 303.9 30.7 299 27-342 631-939 (1140)
101 PRK13390 acyl-CoA synthetase; 100.0 3.6E-36 7.8E-41 279.0 27.8 289 35-342 5-302 (501)
102 PRK08974 long-chain-fatty-acid 100.0 2.5E-35 5.3E-40 277.0 33.0 312 27-342 23-357 (560)
103 PRK05850 acyl-CoA synthetase; 100.0 2.1E-36 4.5E-41 285.3 25.6 292 27-342 1-326 (578)
104 PRK05851 long-chain-fatty-acid 100.0 1.5E-36 3.3E-41 282.7 24.1 287 29-342 4-310 (525)
105 PRK07787 acyl-CoA synthetase; 100.0 8.3E-36 1.8E-40 274.4 27.1 264 37-342 10-273 (471)
106 PRK13391 acyl-CoA synthetase; 100.0 3.1E-35 6.7E-40 273.4 30.0 293 34-342 4-307 (511)
107 PRK09192 acyl-CoA synthetase; 100.0 1.4E-35 2.9E-40 279.5 25.5 300 18-342 14-337 (579)
108 PRK09029 O-succinylbenzoic aci 100.0 5E-35 1.1E-39 268.3 27.0 267 29-342 4-271 (458)
109 PRK07768 long-chain-fatty-acid 100.0 1.7E-34 3.6E-39 270.5 27.8 291 28-342 3-314 (545)
110 PRK08308 acyl-CoA synthetase; 100.0 2.1E-34 4.5E-39 260.8 26.9 242 46-342 2-243 (414)
111 TIGR01733 AA-adenyl-dom amino 100.0 2.2E-34 4.7E-39 260.4 26.4 263 56-342 1-267 (408)
112 PRK08276 long-chain-fatty-acid 100.0 5.5E-34 1.2E-38 264.5 28.6 281 45-342 2-294 (502)
113 PRK12406 long-chain-fatty-acid 100.0 8.4E-34 1.8E-38 263.7 28.6 289 45-342 4-303 (509)
114 KOG1180 Acyl-CoA synthetase [L 100.0 1.2E-34 2.7E-39 250.7 19.7 313 26-342 40-434 (678)
115 PTZ00297 pantothenate kinase; 100.0 1.3E-33 2.7E-38 279.8 29.3 268 27-300 427-706 (1452)
116 PRK07445 O-succinylbenzoic aci 100.0 6.5E-34 1.4E-38 259.6 23.0 242 54-342 19-261 (452)
117 TIGR01923 menE O-succinylbenzo 100.0 3.2E-33 7E-38 254.9 25.6 250 56-342 1-250 (436)
118 KOG1175 Acyl-CoA synthetase [L 100.0 9.8E-32 2.1E-36 242.7 22.0 300 40-342 78-392 (626)
119 PLN03051 acyl-activating enzym 100.0 8.2E-31 1.8E-35 242.7 22.1 251 86-342 1-270 (499)
120 TIGR03089 conserved hypothetic 100.0 5.9E-30 1.3E-34 210.6 22.4 220 33-285 2-227 (227)
121 COG1020 EntF Non-ribosomal pep 100.0 4.5E-27 9.8E-32 224.5 29.2 287 27-342 227-519 (642)
122 KOG3628 Predicted AMP-binding 99.8 8.8E-19 1.9E-23 163.0 19.9 294 27-334 770-1093(1363)
123 TIGR02372 4_coum_CoA_lig 4-cou 99.8 1.6E-19 3.5E-24 160.4 14.4 141 192-342 95-237 (386)
124 PRK07824 O-succinylbenzoic aci 99.8 6.8E-18 1.5E-22 150.0 16.1 147 188-342 31-182 (358)
125 TIGR02155 PA_CoA_ligase phenyl 99.7 7.1E-17 1.5E-21 146.5 13.1 152 190-342 73-227 (422)
126 TIGR03335 F390_ftsA coenzyme F 99.6 3.4E-15 7.4E-20 135.9 12.1 150 190-342 84-236 (445)
127 KOG1178 Non-ribosomal peptide 99.6 3.8E-15 8.1E-20 142.4 12.2 293 28-334 37-352 (1032)
128 COG1541 PaaK Coenzyme F390 syn 99.2 7.8E-11 1.7E-15 103.3 11.7 153 188-342 86-242 (438)
129 KOG3628 Predicted AMP-binding 99.1 6.5E-10 1.4E-14 105.0 9.7 285 28-328 95-417 (1363)
130 TIGR02304 aden_form_hyp probab 98.7 1.7E-07 3.8E-12 84.1 10.8 139 194-342 101-244 (430)
131 PF04443 LuxE: Acyl-protein sy 96.0 0.11 2.3E-06 46.2 11.3 146 190-336 87-254 (365)
132 COG1541 PaaK Coenzyme F390 syn 95.9 0.07 1.5E-06 47.9 9.4 86 53-139 108-195 (438)
133 TIGR02155 PA_CoA_ligase phenyl 92.1 1.3 2.7E-05 40.5 9.6 86 53-139 93-180 (422)
134 TIGR03335 F390_ftsA coenzyme F 91.8 1.7 3.6E-05 40.1 10.0 81 53-136 104-186 (445)
135 TIGR03089 conserved hypothetic 85.7 6.9 0.00015 32.3 8.6 54 72-127 171-226 (227)
136 PRK07656 long-chain-fatty-acid 84.3 9.8 0.00021 35.5 10.1 98 40-141 164-270 (513)
137 PRK06187 long-chain-fatty-acid 83.3 15 0.00032 34.2 10.9 85 53-141 185-270 (521)
138 TIGR03590 PseG pseudaminic aci 80.1 16 0.00035 31.2 9.0 95 52-153 9-112 (279)
139 TIGR01733 AA-adenyl-dom amino 77.9 29 0.00064 31.1 10.6 99 41-142 119-227 (408)
140 PRK06334 long chain fatty acid 77.9 29 0.00062 32.8 10.8 98 40-140 181-287 (539)
141 PRK08315 AMP-binding domain pr 77.5 26 0.00055 33.2 10.4 83 53-138 217-301 (559)
142 KOG1177 Long chain fatty acid 76.9 60 0.0013 30.1 11.4 119 15-140 197-338 (596)
143 PRK12583 acyl-CoA synthetase; 76.6 34 0.00073 32.3 11.0 83 53-138 219-303 (558)
144 PF00501 AMP-binding: AMP-bind 76.4 21 0.00046 32.1 9.3 91 189-289 7-99 (417)
145 PLN03051 acyl-activating enzym 75.0 27 0.00059 32.6 9.7 97 41-140 118-222 (499)
146 PTZ00342 acyl-CoA synthetase; 74.7 39 0.00084 33.6 10.9 119 190-318 74-208 (746)
147 TIGR01923 menE O-succinylbenzo 73.9 23 0.0005 32.1 8.9 84 53-142 129-213 (436)
148 TIGR03098 ligase_PEP_1 acyl-Co 73.7 26 0.00056 32.7 9.3 86 53-142 179-265 (515)
149 PRK06164 acyl-CoA synthetase; 73.7 34 0.00073 32.2 10.1 97 41-141 180-284 (540)
150 COG0399 WecE Predicted pyridox 73.5 22 0.00047 31.8 8.0 65 64-132 59-128 (374)
151 PRK04319 acetyl-CoA synthetase 71.7 37 0.00079 32.3 9.9 98 41-141 204-310 (570)
152 PRK06188 acyl-CoA synthetase; 71.2 52 0.0011 30.8 10.7 84 53-140 186-269 (524)
153 PLN02736 long-chain acyl-CoA s 70.6 54 0.0012 31.9 10.9 101 211-317 78-180 (651)
154 PLN02860 o-succinylbenzoate-Co 68.7 60 0.0013 30.9 10.6 97 40-140 170-274 (563)
155 PF01041 DegT_DnrJ_EryC1: DegT 68.6 18 0.0004 32.2 6.7 65 65-133 51-120 (363)
156 PLN02247 indole-3-acetic acid- 68.4 5.3 0.00012 38.0 3.3 31 190-220 87-118 (606)
157 PF03321 GH3: GH3 auxin-respon 67.9 0.92 2E-05 42.7 -1.8 32 188-219 76-108 (528)
158 cd02070 corrinoid_protein_B12- 67.6 64 0.0014 26.0 9.4 89 236-326 84-180 (201)
159 cd01445 TST_Repeats Thiosulfat 67.3 18 0.00039 27.1 5.4 41 65-105 81-124 (138)
160 PRK08308 acyl-CoA synthetase; 67.2 72 0.0016 28.8 10.5 98 40-141 99-205 (414)
161 PLN02249 indole-3-acetic acid- 67.1 2.6 5.6E-05 40.2 1.0 30 189-218 97-127 (597)
162 cd02069 methionine_synthase_B1 67.0 59 0.0013 26.6 8.7 90 235-328 89-186 (213)
163 PLN02565 cysteine synthase 66.8 57 0.0012 28.6 9.2 91 43-135 31-122 (322)
164 PRK08316 acyl-CoA synthetase; 65.6 78 0.0017 29.5 10.7 84 53-140 189-274 (523)
165 TIGR02379 ECA_wecE TDP-4-keto- 65.5 36 0.00078 30.6 7.9 60 70-133 62-126 (376)
166 PRK06839 acyl-CoA synthetase; 65.3 83 0.0018 29.1 10.7 98 190-298 15-115 (496)
167 PRK11706 TDP-4-oxo-6-deoxy-D-g 65.1 41 0.00088 30.1 8.3 59 71-133 63-126 (375)
168 PRK09274 peptide synthase; Pro 64.9 71 0.0015 30.2 10.3 99 191-291 20-121 (552)
169 TIGR02370 pyl_corrinoid methyl 64.3 74 0.0016 25.6 11.2 89 237-327 86-183 (197)
170 COG1022 FAA1 Long-chain acyl-C 63.2 63 0.0014 31.2 9.3 100 38-141 187-294 (613)
171 PRK07638 acyl-CoA synthetase; 63.0 56 0.0012 30.2 9.1 86 53-142 161-247 (487)
172 PRK03640 O-succinylbenzoic aci 62.6 72 0.0016 29.4 9.7 97 41-141 140-244 (483)
173 TIGR02262 benz_CoA_lig benzoat 62.3 74 0.0016 29.7 9.8 97 41-139 160-265 (508)
174 PRK13295 cyclohexanecarboxylat 62.3 1E+02 0.0022 29.1 10.9 97 40-140 195-300 (547)
175 PLN02574 4-coumarate--CoA liga 61.8 1.1E+02 0.0023 29.1 10.9 100 190-298 52-154 (560)
176 COG1167 ARO8 Transcriptional r 61.7 36 0.00078 31.6 7.4 56 233-293 177-236 (459)
177 PRK10696 tRNA 2-thiocytidine b 61.2 1E+02 0.0022 26.0 9.5 78 56-133 4-94 (258)
178 PRK08043 bifunctional acyl-[ac 60.5 95 0.0021 30.7 10.5 96 40-138 363-467 (718)
179 PRK08314 long-chain-fatty-acid 60.4 1E+02 0.0022 29.1 10.4 97 40-140 188-293 (546)
180 PF03808 Glyco_tran_WecB: Glyc 60.1 12 0.00027 29.3 3.5 17 283-299 50-66 (172)
181 PRK05620 long-chain-fatty-acid 59.8 98 0.0021 29.5 10.3 99 40-139 179-285 (576)
182 PRK05850 acyl-CoA synthetase; 59.3 1.1E+02 0.0023 29.2 10.4 86 210-297 34-123 (578)
183 PRK08008 caiC putative crotono 59.1 1.5E+02 0.0033 27.6 11.3 102 190-297 20-123 (517)
184 PLN02387 long-chain-fatty-acid 59.0 1.2E+02 0.0026 29.9 10.9 102 211-318 106-209 (696)
185 COG4821 Uncharacterized protei 58.1 34 0.00074 27.4 5.5 55 60-135 85-140 (243)
186 PRK07470 acyl-CoA synthetase; 57.9 1.2E+02 0.0025 28.5 10.4 100 41-141 162-269 (528)
187 TIGR01139 cysK cysteine syntha 57.9 1E+02 0.0023 26.5 9.2 91 43-136 22-113 (298)
188 PRK08279 long-chain-acyl-CoA s 57.8 1.1E+02 0.0023 29.4 10.2 84 53-140 217-302 (600)
189 PF02729 OTCace_N: Aspartate/o 57.4 81 0.0018 23.8 8.6 81 59-140 16-108 (142)
190 PRK10946 entE enterobactin syn 56.6 1.2E+02 0.0026 28.6 10.2 97 40-140 180-286 (536)
191 PLN03052 acetate--CoA ligase; 56.4 1.2E+02 0.0026 30.2 10.3 100 190-292 188-289 (728)
192 PLN02246 4-coumarate--CoA liga 55.9 1.3E+02 0.0028 28.4 10.3 98 190-296 36-135 (537)
193 TIGR02275 DHB_AMP_lig 2,3-dihy 55.8 1.3E+02 0.0028 28.2 10.3 97 40-140 181-287 (527)
194 PLN02556 cysteine synthase/L-3 55.8 92 0.002 27.9 8.7 60 75-134 106-165 (368)
195 KOG1176 Acyl-CoA synthetase [L 55.7 56 0.0012 31.0 7.5 91 209-301 43-137 (537)
196 COG0031 CysK Cysteine synthase 55.0 1.3E+02 0.0027 26.1 8.8 62 72-134 54-116 (300)
197 PLN03013 cysteine synthase 54.5 1E+02 0.0022 28.3 8.7 81 53-135 149-230 (429)
198 PRK11658 UDP-4-amino-4-deoxy-L 54.3 72 0.0016 28.6 7.9 62 66-131 60-126 (379)
199 PRK05857 acyl-CoA synthetase; 54.3 1.2E+02 0.0025 28.7 9.7 95 190-293 27-123 (540)
200 PLN03102 acyl-activating enzym 54.2 81 0.0018 30.1 8.7 83 211-295 39-123 (579)
201 PRK07529 AMP-binding domain pr 54.0 1E+02 0.0023 29.8 9.5 98 190-290 38-136 (632)
202 PRK05677 long-chain-fatty-acid 54.0 1.3E+02 0.0027 28.7 9.9 83 211-295 49-134 (562)
203 cd01449 TST_Repeat_2 Thiosulfa 52.3 32 0.00069 24.6 4.5 40 65-104 64-103 (118)
204 PRK08633 2-acyl-glycerophospho 51.5 1.6E+02 0.0035 30.8 11.1 100 189-298 627-727 (1146)
205 cd01519 RHOD_HSP67B2 Member of 51.3 39 0.00084 23.5 4.7 51 54-104 37-91 (106)
206 PRK08751 putative long-chain f 51.0 96 0.0021 29.3 8.7 95 190-295 38-135 (560)
207 PRK05852 acyl-CoA synthetase; 50.8 1.5E+02 0.0033 27.8 9.9 86 53-141 194-282 (534)
208 PLN02620 indole-3-acetic acid- 50.4 12 0.00026 35.7 2.4 31 189-219 98-129 (612)
209 PRK13388 acyl-CoA synthetase; 50.4 2.1E+02 0.0045 27.1 10.7 94 40-137 148-250 (540)
210 PRK07008 long-chain-fatty-acid 50.2 1.1E+02 0.0025 28.8 8.9 86 53-140 194-281 (539)
211 PRK05718 keto-hydroxyglutarate 50.0 1E+02 0.0022 25.1 7.4 61 266-332 112-175 (212)
212 PLN00011 cysteine synthase 49.9 1.6E+02 0.0035 25.8 9.2 65 70-135 58-124 (323)
213 TIGR03588 PseC UDP-4-keto-6-de 49.4 1.1E+02 0.0025 27.3 8.4 65 65-132 55-127 (380)
214 PRK09162 hypoxanthine-guanine 49.0 60 0.0013 25.7 5.8 50 52-103 14-63 (181)
215 TIGR01734 D-ala-DACP-lig D-ala 48.9 2.1E+02 0.0046 26.4 10.5 84 53-139 159-245 (502)
216 cd02071 MM_CoA_mut_B12_BD meth 48.9 1E+02 0.0022 22.4 8.3 84 245-332 11-101 (122)
217 TIGR02188 Ac_CoA_lig_AcsA acet 48.8 1.3E+02 0.0029 29.0 9.3 98 190-292 70-169 (625)
218 PRK05605 long-chain-fatty-acid 48.8 1.4E+02 0.003 28.4 9.4 85 211-297 57-143 (573)
219 PLN02614 long-chain acyl-CoA s 48.8 2.6E+02 0.0057 27.4 11.3 87 211-299 79-167 (666)
220 PRK00174 acetyl-CoA synthetase 48.8 1.5E+02 0.0033 28.7 9.7 98 190-292 80-179 (637)
221 COG2236 Predicted phosphoribos 48.3 34 0.00074 27.4 4.2 34 52-85 4-37 (192)
222 PRK15407 lipopolysaccharide bi 48.1 1E+02 0.0022 28.4 8.0 55 75-133 107-166 (438)
223 PLN02330 4-coumarate--CoA liga 47.8 1.8E+02 0.0039 27.5 9.9 98 190-296 41-140 (546)
224 PRK10252 entF enterobactin syn 47.7 1.8E+02 0.004 31.0 10.8 97 40-139 596-702 (1296)
225 PRK07798 acyl-CoA synthetase; 47.2 2.4E+02 0.0052 26.2 10.7 85 211-297 28-114 (533)
226 PRK02261 methylaspartate mutas 47.1 1.2E+02 0.0026 22.7 7.3 54 81-134 5-62 (137)
227 PRK11493 sseA 3-mercaptopyruva 47.1 35 0.00077 29.1 4.6 53 53-105 200-257 (281)
228 PRK07787 acyl-CoA synthetase; 47.1 2.3E+02 0.005 26.0 10.5 97 40-141 126-231 (471)
229 PF06543 Lac_bphage_repr: Lact 46.9 16 0.00035 21.4 1.6 22 313-334 23-44 (49)
230 PRK06702 O-acetylhomoserine am 46.9 1.4E+02 0.003 27.5 8.5 56 76-133 97-154 (432)
231 PLN02654 acetate-CoA ligase 46.7 1.2E+02 0.0025 29.8 8.6 80 211-292 120-201 (666)
232 PRK07769 long-chain-fatty-acid 46.5 2.8E+02 0.006 26.9 11.1 84 211-296 55-142 (631)
233 cd03466 Nitrogenase_NifN_2 Nit 46.3 1.7E+02 0.0036 26.9 9.0 56 78-134 299-358 (429)
234 PLN02430 long-chain-fatty-acid 46.2 2.6E+02 0.0056 27.4 10.9 101 212-317 77-179 (660)
235 COG0318 CaiC Acyl-CoA syntheta 46.1 2.4E+02 0.0051 26.7 10.4 100 40-140 169-278 (534)
236 KOG0023 Alcohol dehydrogenase, 46.0 1E+02 0.0022 27.0 6.8 69 68-139 171-239 (360)
237 PRK12476 putative fatty-acid-- 45.7 1.5E+02 0.0034 28.5 9.2 85 211-297 68-156 (612)
238 PF09269 DUF1967: Domain of un 45.6 22 0.00047 23.0 2.3 22 63-84 41-62 (69)
239 cd01974 Nitrogenase_MoFe_beta 45.4 1.6E+02 0.0034 27.1 8.8 31 78-109 302-332 (435)
240 PRK02261 methylaspartate mutas 45.3 1.3E+02 0.0028 22.5 9.3 85 245-332 15-111 (137)
241 PRK06155 crotonobetaine/carnit 45.3 2E+02 0.0043 27.2 9.8 97 40-140 178-282 (542)
242 cd02070 corrinoid_protein_B12- 45.3 1.6E+02 0.0035 23.6 9.7 83 52-134 48-141 (201)
243 TIGR01136 cysKM cysteine synth 44.8 2E+02 0.0044 24.7 10.5 90 43-135 23-113 (299)
244 PTZ00237 acetyl-CoA synthetase 44.7 1.2E+02 0.0026 29.5 8.3 80 210-291 91-172 (647)
245 cd02067 B12-binding B12 bindin 44.7 1.2E+02 0.0025 21.8 7.0 45 90-134 12-58 (119)
246 PRK07867 acyl-CoA synthetase; 44.5 1.5E+02 0.0032 28.0 8.7 84 211-296 28-114 (529)
247 TIGR03595 Obg_CgtA_exten Obg f 44.4 30 0.00065 22.4 2.8 19 67-85 45-63 (69)
248 PLN02723 3-mercaptopyruvate su 43.7 44 0.00096 29.2 4.7 52 54-105 238-295 (320)
249 PRK12406 long-chain-fatty-acid 43.6 2.5E+02 0.0053 26.2 10.1 68 72-140 189-257 (509)
250 TIGR03443 alpha_am_amid L-amin 43.4 1.7E+02 0.0036 31.7 9.7 100 190-291 249-350 (1389)
251 TIGR03208 cyc_hxne_CoA_lg cycl 43.3 2.9E+02 0.0062 26.0 10.5 96 40-139 193-297 (538)
252 PRK13383 acyl-CoA synthetase; 42.7 1.8E+02 0.004 27.1 9.1 85 211-297 60-146 (516)
253 KOG0025 Zn2+-binding dehydroge 42.6 1E+02 0.0022 26.6 6.3 65 75-139 157-222 (354)
254 PRK07514 malonyl-CoA synthase; 42.5 1.9E+02 0.0041 26.8 9.1 85 211-297 28-114 (504)
255 PF08967 DUF1884: Domain of un 42.4 69 0.0015 21.4 4.2 68 59-142 9-76 (85)
256 PF09664 DUF2399: Protein of u 42.3 1.6E+02 0.0034 22.6 10.0 76 258-340 63-141 (152)
257 TIGR02316 propion_prpE propion 42.0 1.5E+02 0.0032 28.8 8.4 97 190-291 65-163 (628)
258 PF04122 CW_binding_2: Putativ 41.7 1.1E+02 0.0024 20.8 7.1 70 59-131 7-77 (92)
259 PRK06814 acylglycerophosphoeth 41.5 2.9E+02 0.0062 29.1 11.0 98 40-140 791-897 (1140)
260 PLN02861 long-chain-fatty-acid 41.4 2.3E+02 0.0049 27.7 9.7 87 211-299 77-165 (660)
261 PLN02238 hypoxanthine phosphor 41.2 85 0.0018 25.0 5.6 45 53-98 10-54 (189)
262 PRK08162 acyl-CoA synthetase; 41.0 1.5E+02 0.0033 27.8 8.3 85 211-297 43-129 (545)
263 COG1064 AdhP Zn-dependent alco 40.6 82 0.0018 27.8 5.7 62 69-134 157-218 (339)
264 TIGR01217 ac_ac_CoA_syn acetoa 40.4 1.5E+02 0.0033 28.8 8.3 80 211-292 114-195 (652)
265 KOG0257 Kynurenine aminotransf 40.3 2.9E+02 0.0062 25.1 9.1 91 27-119 43-133 (420)
266 cd07100 ALDH_SSADH1_GabD1 Myco 40.2 1.6E+02 0.0035 27.0 8.0 79 234-320 96-184 (429)
267 PRK15400 lysine decarboxylase 40.1 1E+02 0.0022 30.4 6.8 57 76-135 232-307 (714)
268 PF07994 NAD_binding_5: Myo-in 39.3 2.6E+02 0.0055 24.3 9.3 70 57-128 128-227 (295)
269 PRK05939 hypothetical protein; 39.2 1.9E+02 0.0041 26.2 8.2 56 76-133 83-138 (397)
270 cd01448 TST_Repeat_1 Thiosulfa 39.1 1.1E+02 0.0024 21.9 5.6 40 66-105 66-106 (122)
271 TIGR01137 cysta_beta cystathio 38.9 2.4E+02 0.0052 26.0 9.0 89 43-134 27-116 (454)
272 cd01561 CBS_like CBS_like: Thi 38.8 2.5E+02 0.0054 24.0 8.9 92 42-136 17-109 (291)
273 PRK09088 acyl-CoA synthetase; 38.6 3.1E+02 0.0067 25.3 9.8 94 190-292 8-103 (488)
274 PRK08974 long-chain-fatty-acid 38.4 1.8E+02 0.004 27.5 8.4 81 211-293 48-131 (560)
275 TIGR00715 precor6x_red precorr 38.2 83 0.0018 26.6 5.3 72 79-153 150-232 (256)
276 PRK07476 eutB threonine dehydr 38.1 2.1E+02 0.0045 25.1 8.0 53 84-136 71-123 (322)
277 PRK06087 short chain acyl-CoA 38.0 3.5E+02 0.0076 25.5 10.3 90 40-133 185-283 (547)
278 PF01276 OKR_DC_1: Orn/Lys/Arg 38.0 81 0.0018 28.8 5.5 59 76-137 103-180 (417)
279 cd07147 ALDH_F21_RNP123 Aldehy 37.6 1.4E+02 0.0031 27.5 7.3 79 234-320 123-211 (452)
280 cd07050 BMC_EutL_repeat2 ethan 37.5 55 0.0012 21.8 3.2 40 68-107 3-43 (87)
281 PRK08276 long-chain-fatty-acid 37.4 2.8E+02 0.0061 25.7 9.4 84 212-297 12-97 (502)
282 PRK10595 SOS cell division inh 37.4 1.4E+02 0.0031 23.2 6.0 38 68-105 70-107 (164)
283 PRK03584 acetoacetyl-CoA synth 37.4 1.8E+02 0.0039 28.3 8.3 68 73-140 299-369 (655)
284 TIGR01286 nifK nitrogenase mol 37.3 3E+02 0.0065 26.1 9.3 46 78-124 362-411 (515)
285 cd00615 Orn_deC_like Ornithine 37.0 1.8E+02 0.0039 24.9 7.5 55 76-133 96-161 (294)
286 PRK06381 threonine synthase; V 36.9 1.2E+02 0.0027 26.4 6.5 88 43-136 32-119 (319)
287 KOG1179 Very long-chain acyl-C 36.9 1.6E+02 0.0035 28.0 7.1 75 54-133 261-338 (649)
288 cd06404 PB1_aPKC PB1 domain is 36.9 52 0.0011 22.2 3.0 42 43-86 10-57 (83)
289 PTZ00216 acyl-CoA synthetase; 36.8 3.8E+02 0.0083 26.4 10.5 90 209-300 119-210 (700)
290 KOG1250 Threonine/serine dehyd 36.8 2.3E+02 0.005 25.7 7.7 54 84-137 118-171 (457)
291 PLN02419 methylmalonate-semial 36.7 2.2E+02 0.0047 27.6 8.4 79 234-320 249-337 (604)
292 PF00455 DeoRC: DeoR C termina 36.7 1.2E+02 0.0026 23.4 5.6 57 258-322 17-74 (161)
293 PRK07788 acyl-CoA synthetase; 36.6 1.5E+02 0.0032 28.0 7.4 84 53-140 225-309 (549)
294 cd07085 ALDH_F6_MMSDH Methylma 36.3 2.2E+02 0.0047 26.6 8.3 79 234-320 136-224 (478)
295 TIGR01138 cysM cysteine syntha 36.3 2.8E+02 0.006 23.8 9.2 89 43-134 24-113 (290)
296 TIGR03240 arg_catab_astD succi 36.1 2.2E+02 0.0048 26.6 8.3 79 234-320 132-220 (484)
297 TIGR02372 4_coum_CoA_lig 4-cou 35.9 3.3E+02 0.0071 24.6 11.4 109 27-141 80-199 (386)
298 TIGR01796 CM_mono_aroH monofun 35.7 46 0.001 24.1 2.9 54 56-109 14-71 (117)
299 PRK10524 prpE propionyl-CoA sy 35.7 2E+02 0.0044 27.7 8.4 97 190-291 66-164 (629)
300 cd07109 ALDH_AAS00426 Uncharac 35.5 2.4E+02 0.0051 26.1 8.4 79 234-320 117-206 (454)
301 PRK07059 Long-chain-fatty-acid 35.3 2.7E+02 0.0058 26.3 9.0 84 211-296 48-133 (557)
302 cd07083 ALDH_P5CDH ALDH subfam 35.1 2E+02 0.0043 27.1 7.9 90 234-331 154-255 (500)
303 cd06448 L-Ser-dehyd Serine deh 34.8 1.3E+02 0.0028 26.3 6.2 91 42-135 16-106 (316)
304 PRK06178 acyl-CoA synthetase; 34.5 2.8E+02 0.006 26.3 9.0 86 211-298 58-145 (567)
305 TIGR02080 O_succ_thio_ly O-suc 34.5 2.3E+02 0.0049 25.6 7.9 18 114-132 125-142 (382)
306 PRK06145 acyl-CoA synthetase; 34.4 3.8E+02 0.0081 24.8 10.7 97 40-140 147-252 (497)
307 PRK13252 betaine aldehyde dehy 34.3 2.4E+02 0.0051 26.4 8.2 79 234-320 142-230 (488)
308 COG0365 Acs Acyl-coenzyme A sy 34.3 2.5E+02 0.0055 26.6 8.3 99 192-297 25-126 (528)
309 TIGR01780 SSADH succinate-semi 34.3 2.2E+02 0.0047 26.3 7.9 79 234-320 117-207 (448)
310 PRK08574 cystathionine gamma-s 34.3 2.2E+02 0.0047 25.7 7.7 56 76-133 89-144 (385)
311 PRK12582 acyl-CoA synthetase; 33.9 1.9E+02 0.0042 27.9 7.8 79 211-291 80-165 (624)
312 cd07131 ALDH_AldH-CAJ73105 Unc 33.8 1.8E+02 0.004 27.0 7.4 80 234-321 135-225 (478)
313 cd07095 ALDH_SGSD_AstD N-succi 33.7 2.7E+02 0.0059 25.6 8.4 79 234-320 97-185 (431)
314 cd07148 ALDH_RL0313 Uncharacte 33.6 2.3E+02 0.005 26.2 8.0 79 234-320 124-212 (455)
315 COG1167 ARO8 Transcriptional r 33.6 4E+02 0.0086 24.8 10.1 59 77-136 177-236 (459)
316 PLN02467 betaine aldehyde dehy 33.5 2.9E+02 0.0063 26.0 8.7 80 233-320 150-240 (503)
317 PRK13968 putative succinate se 33.5 3.2E+02 0.0069 25.4 8.8 78 234-319 126-213 (462)
318 PRK13237 tyrosine phenol-lyase 33.3 3.7E+02 0.0081 25.0 8.9 69 53-126 76-174 (460)
319 cd07113 ALDH_PADH_NahF Escheri 33.2 2.4E+02 0.0051 26.4 8.0 79 234-320 142-230 (477)
320 PLN02766 coniferyl-aldehyde de 33.2 2.5E+02 0.0055 26.4 8.2 80 234-321 158-248 (501)
321 PRK10090 aldehyde dehydrogenas 33.2 2.8E+02 0.0061 25.3 8.3 79 234-320 71-160 (409)
322 PF02310 B12-binding: B12 bind 33.1 1.5E+02 0.0033 21.1 5.5 46 244-290 11-58 (121)
323 COG1611 Predicted Rossmann fol 33.0 2.7E+02 0.0058 22.6 7.3 71 41-117 14-84 (205)
324 PRK09331 Sep-tRNA:Cys-tRNA syn 32.9 2.7E+02 0.0059 25.0 8.2 55 76-133 99-165 (387)
325 PLN02356 phosphateglycerate ki 32.9 3E+02 0.0064 25.3 8.2 88 43-133 69-157 (423)
326 PRK12492 long-chain-fatty-acid 32.8 2.1E+02 0.0046 27.1 7.9 81 211-293 49-132 (562)
327 cd07110 ALDH_F10_BADH Arabidop 32.8 2.6E+02 0.0056 25.9 8.2 78 234-319 120-208 (456)
328 PRK06060 acyl-CoA synthetase; 32.7 3.2E+02 0.0069 26.9 9.3 98 41-140 144-250 (705)
329 PF00156 Pribosyltran: Phospho 32.7 1.5E+02 0.0033 21.2 5.5 48 54-104 4-51 (125)
330 PF09373 PMBR: Pseudomurein-bi 32.5 85 0.0018 16.8 3.4 25 52-76 2-26 (33)
331 TIGR01722 MMSDH methylmalonic 32.5 2.6E+02 0.0057 26.1 8.2 81 234-322 136-226 (477)
332 cd07124 ALDH_PutA-P5CDH-RocA D 32.5 2.1E+02 0.0046 27.0 7.6 80 234-321 166-256 (512)
333 TIGR01278 DPOR_BchB light-inde 32.5 1.8E+02 0.004 27.4 7.2 34 78-111 294-327 (511)
334 cd07111 ALDH_F16 Aldehyde dehy 32.3 2.5E+02 0.0054 26.3 8.0 80 234-321 147-236 (480)
335 TIGR01203 HGPRTase hypoxanthin 32.3 1.6E+02 0.0035 22.8 5.8 20 55-74 3-22 (166)
336 PRK14807 histidinol-phosphate 32.3 3.5E+02 0.0076 23.8 10.9 55 76-133 97-155 (351)
337 cd02071 MM_CoA_mut_B12_BD meth 32.1 2E+02 0.0043 20.9 6.5 38 97-134 21-58 (122)
338 PRK09457 astD succinylglutamic 32.1 3.2E+02 0.0068 25.6 8.7 79 234-320 134-222 (487)
339 PRK13391 acyl-CoA synthetase; 31.9 4.2E+02 0.0092 24.6 10.9 98 190-296 10-109 (511)
340 PRK07768 long-chain-fatty-acid 31.9 4.1E+02 0.009 24.9 9.7 92 40-134 150-254 (545)
341 cd07105 ALDH_SaliADH Salicylal 31.7 2.4E+02 0.0051 25.9 7.7 79 234-320 98-190 (432)
342 PF08479 POTRA_2: POTRA domain 31.4 82 0.0018 20.5 3.5 26 52-77 28-53 (76)
343 PTZ00271 hypoxanthine-guanine 31.2 1.4E+02 0.0031 24.3 5.4 47 54-100 27-78 (211)
344 PLN02278 succinic semialdehyde 31.2 2.3E+02 0.005 26.6 7.6 79 234-320 160-249 (498)
345 PRK11761 cysM cysteine synthas 31.1 3.5E+02 0.0075 23.3 9.9 89 43-134 28-117 (296)
346 PRK09406 gabD1 succinic semial 30.9 2.5E+02 0.0055 26.0 7.7 82 233-322 122-213 (457)
347 PRK05205 bifunctional pyrimidi 30.8 1.8E+02 0.0039 22.8 5.9 47 53-101 5-53 (176)
348 PRK15423 hypoxanthine phosphor 30.8 1.6E+02 0.0034 23.3 5.5 45 54-98 8-53 (178)
349 cd04910 ACT_AK-Ectoine_1 ACT d 30.7 1.5E+02 0.0032 19.4 4.4 51 273-338 19-69 (71)
350 cd06534 ALDH-SF NAD(P)+-depend 30.5 3.9E+02 0.0084 23.7 9.5 78 234-319 92-180 (367)
351 PRK10287 thiosulfate:cyanide s 30.2 2E+02 0.0043 20.3 5.6 48 53-107 41-88 (104)
352 PRK03137 1-pyrroline-5-carboxy 30.2 3.4E+02 0.0075 25.6 8.6 79 234-320 171-260 (514)
353 PF14552 Tautomerase_2: Tautom 30.1 79 0.0017 21.3 3.2 52 40-91 25-77 (82)
354 COG4009 Uncharacterized protei 30.1 1.7E+02 0.0037 19.5 5.7 66 53-129 8-76 (88)
355 PF07722 Peptidase_C26: Peptid 30.1 59 0.0013 26.6 3.1 32 95-126 29-60 (217)
356 cd07102 ALDH_EDX86601 Uncharac 30.1 2.9E+02 0.0062 25.5 8.0 79 234-320 116-204 (452)
357 COG4126 Hydantoin racemase [Am 29.9 2E+02 0.0043 23.6 5.8 88 252-341 100-203 (230)
358 cd07078 ALDH NAD(P)+ dependent 29.9 2.7E+02 0.0059 25.4 7.8 49 235-283 97-150 (432)
359 PF08845 SymE_toxin: Toxin Sym 29.6 60 0.0013 20.1 2.3 22 68-89 30-51 (57)
360 cd07139 ALDH_AldA-Rv0768 Mycob 29.6 3.4E+02 0.0074 25.2 8.4 80 234-321 137-226 (471)
361 smart00450 RHOD Rhodanese Homo 29.5 1.7E+02 0.0037 19.4 5.5 40 66-105 43-82 (100)
362 PRK07786 long-chain-fatty-acid 29.4 4.8E+02 0.011 24.5 10.3 86 53-141 192-280 (542)
363 cd07089 ALDH_CddD-AldA-like Rh 29.4 3.2E+02 0.0069 25.3 8.1 79 234-320 123-212 (459)
364 PRK06382 threonine dehydratase 29.3 3.2E+02 0.0069 24.9 8.0 89 43-136 41-129 (406)
365 PRK15399 lysine decarboxylase 29.2 2E+02 0.0044 28.4 6.9 47 76-125 232-292 (713)
366 TIGR01279 DPOR_bchN light-inde 28.7 4.3E+02 0.0092 24.1 8.7 105 29-148 261-365 (407)
367 TIGR02370 pyl_corrinoid methyl 28.6 3.1E+02 0.0067 22.0 9.8 83 52-134 49-143 (197)
368 cd07138 ALDH_CddD_SSP0762 Rhod 28.5 3.3E+02 0.0072 25.3 8.2 79 234-320 130-219 (466)
369 PF00171 Aldedh: Aldehyde dehy 28.5 2.6E+02 0.0057 25.9 7.5 77 236-320 128-215 (462)
370 TIGR00067 glut_race glutamate 28.5 2.4E+02 0.0052 23.7 6.6 54 34-91 15-73 (251)
371 PLN02479 acetate-CoA ligase 28.4 5E+02 0.011 24.6 9.6 82 211-294 45-128 (567)
372 cd07119 ALDH_BADH-GbsA Bacillu 28.4 2.7E+02 0.0058 26.0 7.5 79 234-320 134-223 (482)
373 PRK07503 methionine gamma-lyas 28.3 3.3E+02 0.0072 24.7 7.9 55 76-132 101-156 (403)
374 PLN02190 cellulose synthase-li 28.1 98 0.0021 30.5 4.5 68 10-79 96-168 (756)
375 PF02350 Epimerase_2: UDP-N-ac 28.0 3.8E+02 0.0082 23.8 8.1 112 27-145 22-142 (346)
376 PRK10717 cysteine synthase A; 27.9 4.2E+02 0.009 23.2 8.7 90 43-135 29-119 (330)
377 cd02185 AroH Chorismate mutase 27.9 73 0.0016 23.1 2.8 54 56-109 14-71 (117)
378 cd07090 ALDH_F9_TMBADH NAD+-de 27.8 3.2E+02 0.0069 25.3 7.9 90 234-331 116-216 (457)
379 PRK09177 xanthine-guanine phos 27.7 2E+02 0.0042 22.1 5.5 44 53-99 8-51 (156)
380 cd07097 ALDH_KGSADH-YcbD Bacil 27.7 2.9E+02 0.0062 25.8 7.6 79 235-321 136-225 (473)
381 TIGR02299 HpaE 5-carboxymethyl 27.4 3.4E+02 0.0074 25.4 8.1 79 234-320 135-224 (488)
382 CHL00076 chlB photochlorophyll 27.3 3.8E+02 0.0082 25.4 8.3 33 78-110 304-336 (513)
383 PRK05851 long-chain-fatty-acid 27.3 5.2E+02 0.011 24.2 10.5 90 40-132 150-251 (525)
384 TIGR03250 PhnAcAld_DH putative 27.3 3.8E+02 0.0083 25.0 8.3 77 236-320 141-228 (472)
385 PRK02910 light-independent pro 27.3 2.9E+02 0.0064 26.1 7.6 56 78-133 292-349 (519)
386 TIGR01804 BADH glycine betaine 27.2 3.9E+02 0.0084 24.8 8.3 89 235-331 134-234 (467)
387 PF00148 Oxidored_nitro: Nitro 27.2 2.6E+02 0.0057 25.2 7.1 30 79-109 271-300 (398)
388 PRK09224 threonine dehydratase 27.1 5.3E+02 0.011 24.4 9.2 91 42-137 35-125 (504)
389 cd07091 ALDH_F1-2_Ald2-like AL 27.0 2.5E+02 0.0053 26.2 7.0 79 234-320 141-230 (476)
390 cd00640 Trp-synth-beta_II Tryp 27.0 3.6E+02 0.0078 22.2 9.0 91 42-135 15-105 (244)
391 PRK13578 ornithine decarboxyla 27.0 2.2E+02 0.0047 28.3 6.7 48 76-125 211-272 (720)
392 PRK13509 transcriptional repre 27.0 1.6E+02 0.0035 24.7 5.3 51 262-320 95-145 (251)
393 KOG2882 p-Nitrophenyl phosphat 26.9 3.1E+02 0.0066 23.8 6.7 65 30-98 44-125 (306)
394 PF06277 EutA: Ethanolamine ut 26.9 5.3E+02 0.011 24.1 8.6 61 28-90 354-419 (473)
395 PRK11493 sseA 3-mercaptopyruva 26.8 1.8E+02 0.0039 24.8 5.7 43 63-105 71-114 (281)
396 PRK10719 eutA reactivating fac 26.7 5.3E+02 0.012 24.1 8.7 47 42-90 374-420 (475)
397 cd07141 ALDH_F1AB_F2_RALDH1 NA 26.7 3.6E+02 0.0077 25.2 8.0 80 234-321 145-235 (481)
398 PRK13382 acyl-CoA synthetase; 26.6 3.9E+02 0.0084 25.2 8.4 84 54-141 215-299 (537)
399 TIGR00639 PurN phosphoribosylg 26.6 3.3E+02 0.0072 21.7 6.9 66 66-134 16-87 (190)
400 COG2885 OmpA Outer membrane pr 26.6 2.3E+02 0.005 22.4 5.9 58 28-86 100-161 (190)
401 PLN02409 serine--glyoxylate am 26.5 4E+02 0.0086 24.1 8.1 33 101-133 82-114 (401)
402 PLN02723 3-mercaptopyruvate su 26.5 1.7E+02 0.0037 25.6 5.6 41 65-105 89-130 (320)
403 cd01529 4RHOD_Repeats Member o 26.4 2.1E+02 0.0046 19.3 5.1 48 54-104 34-81 (96)
404 PLN02527 aspartate carbamoyltr 26.1 4.4E+02 0.0096 22.9 9.4 55 78-133 38-103 (306)
405 PF06564 YhjQ: YhjQ protein; 26.1 3.8E+02 0.0081 22.5 7.1 79 34-113 69-151 (243)
406 TIGR03374 ABALDH 1-pyrroline d 26.0 3.5E+02 0.0076 25.2 7.8 80 234-321 137-226 (472)
407 PRK15029 arginine decarboxylas 26.0 2.2E+02 0.0049 28.4 6.6 47 76-125 242-302 (755)
408 PF05728 UPF0227: Uncharacteri 25.9 3.4E+02 0.0074 21.6 7.9 84 30-122 17-101 (187)
409 TIGR01237 D1pyr5carbox2 delta- 25.8 3.1E+02 0.0066 25.9 7.4 79 234-320 167-256 (511)
410 COG5012 Predicted cobalamin bi 25.7 3.8E+02 0.0083 22.1 9.6 82 244-329 115-205 (227)
411 cd07120 ALDH_PsfA-ACA09737 Pse 25.7 3.6E+02 0.0077 25.0 7.8 79 234-320 117-207 (455)
412 cd07103 ALDH_F5_SSADH_GabD Mit 25.7 4.3E+02 0.0092 24.4 8.3 77 235-319 118-205 (451)
413 KOG1252 Cystathionine beta-syn 25.6 4.3E+02 0.0094 23.4 7.5 64 72-135 96-159 (362)
414 PRK13390 acyl-CoA synthetase; 25.6 5.4E+02 0.012 23.8 10.3 94 190-292 10-105 (501)
415 PRK11904 bifunctional proline 25.5 2.7E+02 0.0059 29.1 7.4 79 234-320 684-773 (1038)
416 PRK06234 methionine gamma-lyas 25.5 4.5E+02 0.0098 23.8 8.3 55 76-132 100-155 (400)
417 PRK06018 putative acyl-CoA syn 25.5 3.2E+02 0.0069 25.7 7.7 84 211-296 39-124 (542)
418 cd07112 ALDH_GABALDH-PuuC Esch 25.4 3.8E+02 0.0081 24.9 7.9 78 235-320 125-213 (462)
419 cd07142 ALDH_F2BC Arabidosis a 25.4 3.9E+02 0.0084 24.9 8.0 81 234-322 141-232 (476)
420 PF08734 GYD: GYD domain; Int 25.3 2.3E+02 0.005 19.4 6.2 66 57-122 15-90 (91)
421 PF02310 B12-binding: B12 bind 25.2 1.7E+02 0.0038 20.7 4.7 33 102-134 27-59 (121)
422 TIGR00623 sula cell division i 25.2 2.5E+02 0.0053 22.0 5.5 16 117-132 101-116 (168)
423 cd02069 methionine_synthase_B1 25.1 3.8E+02 0.0082 21.8 10.5 83 52-134 52-147 (213)
424 PLN02466 aldehyde dehydrogenas 25.1 4.3E+02 0.0092 25.2 8.2 81 234-322 195-286 (538)
425 cd01563 Thr-synth_1 Threonine 25.1 2.5E+02 0.0055 24.4 6.4 90 42-137 38-127 (324)
426 cd02065 B12-binding_like B12 b 25.0 2.6E+02 0.0056 19.9 5.6 42 94-135 18-59 (125)
427 cd07093 ALDH_F8_HMSADH Human a 25.0 4.6E+02 0.0099 24.2 8.4 78 234-319 117-205 (455)
428 TIGR02618 tyr_phenol_ly tyrosi 24.9 4E+02 0.0087 24.7 7.6 69 52-125 68-166 (450)
429 KOG0633 Histidinol phosphate a 24.8 70 0.0015 27.0 2.6 70 65-134 96-168 (375)
430 PRK12723 flagellar biosynthesi 24.7 3.3E+02 0.0072 24.7 7.1 99 56-154 146-264 (388)
431 cd01562 Thr-dehyd Threonine de 24.7 3.2E+02 0.007 23.4 7.0 90 42-136 32-121 (304)
432 cd07121 ALDH_EutE Ethanolamine 24.5 3.6E+02 0.0077 24.8 7.4 79 234-320 97-190 (429)
433 cd07145 ALDH_LactADH_F420-Bios 24.5 3.2E+02 0.0069 25.3 7.2 80 234-321 123-213 (456)
434 cd06451 AGAT_like Alanine-glyo 24.5 4E+02 0.0087 23.3 7.7 12 209-220 195-206 (356)
435 PRK11241 gabD succinate-semial 24.5 3.8E+02 0.0083 25.1 7.7 90 234-331 146-247 (482)
436 PF00036 EF-hand_1: EF hand; 24.4 85 0.0018 16.1 2.0 18 49-66 11-28 (29)
437 PF12646 DUF3783: Domain of un 24.4 1.8E+02 0.0039 17.9 4.7 33 63-96 13-45 (58)
438 TIGR00696 wecB_tagA_cpsF bacte 24.4 89 0.0019 24.6 3.1 38 283-324 50-87 (177)
439 cd07088 ALDH_LactADH-AldA Esch 24.4 4.2E+02 0.0091 24.6 8.0 90 234-331 133-234 (468)
440 COG0436 Aspartate/tyrosine/aro 24.4 1.9E+02 0.0042 26.2 5.6 53 77-133 111-170 (393)
441 PLN02893 Cellulose synthase-li 24.3 1.9E+02 0.004 28.7 5.6 77 9-87 103-184 (734)
442 PRK11121 nrdG anaerobic ribonu 24.3 82 0.0018 24.1 2.8 10 313-322 69-78 (154)
443 PRK07050 cystathionine beta-ly 24.2 4.8E+02 0.01 23.6 8.2 9 77-85 102-110 (394)
444 cd07118 ALDH_SNDH Gluconobacte 24.2 3.8E+02 0.0082 24.8 7.6 78 234-319 119-207 (454)
445 PRK14185 bifunctional 5,10-met 24.2 4.7E+02 0.01 22.6 7.9 76 58-134 11-97 (293)
446 cd07143 ALDH_AldA_AN0554 Asper 24.1 4.2E+02 0.009 24.8 7.9 80 234-321 144-234 (481)
447 PF01081 Aldolase: KDPG and KH 24.1 2E+02 0.0043 23.2 5.0 77 253-332 72-168 (196)
448 PRK11809 putA trifunctional tr 24.1 2.9E+02 0.0062 29.7 7.3 81 234-322 768-859 (1318)
449 PRK09192 acyl-CoA synthetase; 24.1 6E+02 0.013 24.2 9.3 87 210-298 48-143 (579)
450 TIGR02981 phageshock_pspE phag 23.9 2.6E+02 0.0056 19.5 5.5 48 53-107 39-86 (101)
451 PRK09629 bifunctional thiosulf 23.9 1.6E+02 0.0036 28.5 5.3 41 65-105 209-249 (610)
452 PRK00779 ornithine carbamoyltr 23.9 4.9E+02 0.011 22.7 9.0 76 57-133 18-105 (304)
453 cd07126 ALDH_F12_P5CDH Delta(1 23.6 4.3E+02 0.0094 24.8 7.9 49 234-282 142-195 (489)
454 cd07114 ALDH_DhaS Uncharacteri 23.6 3.2E+02 0.007 25.3 7.1 76 235-318 120-206 (457)
455 PRK09029 O-succinylbenzoic aci 23.6 5.4E+02 0.012 23.5 8.7 79 211-291 28-108 (458)
456 PF02073 Peptidase_M29: Thermo 23.6 1.6E+02 0.0034 26.8 4.8 50 60-109 3-56 (398)
457 cd07122 ALDH_F20_ACDH Coenzyme 23.5 4E+02 0.0087 24.6 7.5 78 234-319 95-187 (436)
458 PF14617 CMS1: U3-containing 9 23.5 1.8E+02 0.0039 24.5 4.8 53 268-323 162-214 (252)
459 cd07152 ALDH_BenzADH NAD-depen 23.5 5.7E+02 0.012 23.5 8.7 79 234-320 110-199 (443)
460 cd07092 ALDH_ABALDH-YdcW Esche 23.4 4.1E+02 0.0088 24.5 7.7 79 234-320 118-206 (450)
461 PRK13849 putative crown gall t 23.4 4.3E+02 0.0093 21.8 8.9 35 78-113 83-117 (231)
462 TIGR03772 anch_rpt_subst ancho 23.3 6.3E+02 0.014 23.7 9.0 56 80-137 371-431 (479)
463 PF02606 LpxK: Tetraacyldisacc 23.2 5.2E+02 0.011 22.8 8.5 51 100-152 104-154 (326)
464 PLN03026 histidinol-phosphate 23.2 5.4E+02 0.012 23.0 9.8 54 77-133 125-182 (380)
465 PRK07868 acyl-CoA synthetase; 22.9 4.2E+02 0.0092 27.6 8.4 68 73-141 640-709 (994)
466 PLN02550 threonine dehydratase 22.9 7.1E+02 0.015 24.2 11.2 90 43-137 125-214 (591)
467 PRK15398 aldehyde dehydrogenas 22.9 4.1E+02 0.0088 24.8 7.5 80 233-320 128-222 (465)
468 TIGR02288 PaaN_2 phenylacetic 22.9 5.2E+02 0.011 24.8 8.3 79 234-320 193-287 (551)
469 cd07133 ALDH_CALDH_CalB Conife 22.8 5.7E+02 0.012 23.5 8.5 79 234-321 101-188 (434)
470 cd07140 ALDH_F1L_FTFDH 10-form 22.8 4.9E+02 0.011 24.4 8.1 80 234-321 147-237 (486)
471 cd07150 ALDH_VaniDH_like Pseud 22.7 3.7E+02 0.008 24.8 7.3 79 234-320 119-208 (451)
472 TIGR02539 SepCysS Sep-tRNA:Cys 22.7 3.4E+02 0.0073 24.2 6.9 54 77-133 88-153 (370)
473 cd01981 Pchlide_reductase_B Pc 22.6 4.9E+02 0.011 23.8 8.0 33 78-110 300-332 (430)
474 PRK10411 DNA-binding transcrip 22.6 2E+02 0.0044 23.9 5.0 42 271-320 104-145 (240)
475 cd07559 ALDH_ACDHII_AcoD-like 22.5 5.2E+02 0.011 24.2 8.2 79 234-320 136-224 (480)
476 cd02067 B12-binding B12 bindin 22.5 2.9E+02 0.0064 19.6 8.2 47 245-291 11-58 (119)
477 PRK06710 long-chain-fatty-acid 22.5 4.1E+02 0.0088 25.1 7.8 82 211-294 49-132 (563)
478 PRK03958 tRNA 2'-O-methylase; 22.5 3.9E+02 0.0085 21.1 6.2 89 234-329 30-123 (176)
479 PRK08180 feruloyl-CoA synthase 22.4 4.2E+02 0.0091 25.5 7.9 80 210-291 68-154 (614)
480 PRK04813 D-alanine--poly(phosp 22.4 6.1E+02 0.013 23.3 11.0 84 53-139 161-247 (503)
481 PRK11905 bifunctional proline 22.3 3.1E+02 0.0068 29.2 7.2 81 234-322 676-767 (1208)
482 COG2897 SseA Rhodanese-related 22.3 2.1E+02 0.0046 24.6 5.1 55 53-107 202-262 (285)
483 PF06506 PrpR_N: Propionate ca 22.2 3E+02 0.0065 21.5 5.8 80 69-152 68-151 (176)
484 cd01967 Nitrogenase_MoFe_alpha 22.2 5.9E+02 0.013 23.0 9.9 34 77-111 284-317 (406)
485 TIGR02822 adh_fam_2 zinc-bindi 22.0 3.8E+02 0.0083 23.3 7.0 58 71-132 158-215 (329)
486 cd07116 ALDH_ACDHII-AcoD Ralst 21.9 6.5E+02 0.014 23.5 8.8 79 234-320 136-224 (479)
487 cd07144 ALDH_ALD2-YMR170C Sacc 21.9 4.6E+02 0.0099 24.5 7.8 79 234-320 144-233 (484)
488 TIGR02803 ExbD_1 TonB system t 21.8 2.5E+02 0.0054 20.3 4.9 26 79-104 85-113 (122)
489 PTZ00381 aldehyde dehydrogenas 21.8 5.1E+02 0.011 24.4 8.0 77 234-319 109-194 (493)
490 COG1240 ChlD Mg-chelatase subu 21.7 3.5E+02 0.0076 22.9 6.0 62 52-126 88-149 (261)
491 cd07094 ALDH_F21_LactADH-like 21.7 3.8E+02 0.0083 24.7 7.2 78 234-319 123-211 (453)
492 PLN02195 cellulose synthase A 21.6 2.2E+02 0.0047 29.2 5.6 72 7-80 252-328 (977)
493 PRK05638 threonine synthase; V 21.5 3.2E+02 0.0069 25.2 6.6 91 43-139 81-171 (442)
494 COG2062 SixA Phosphohistidine 21.4 4E+02 0.0086 20.7 6.0 90 33-127 6-99 (163)
495 TIGR01285 nifN nitrogenase mol 21.4 6E+02 0.013 23.4 8.3 69 78-147 310-394 (432)
496 PRK09847 gamma-glutamyl-gamma- 21.3 5.2E+02 0.011 24.3 8.0 78 234-319 157-245 (494)
497 COG4820 EutJ Ethanolamine util 21.3 2.5E+02 0.0055 22.8 4.9 57 283-340 200-256 (277)
498 TIGR01238 D1pyr5carbox3 delta- 21.3 5E+02 0.011 24.5 7.9 80 233-320 159-249 (500)
499 cd01968 Nitrogenase_NifE_I Nit 21.1 6.3E+02 0.014 23.0 11.8 53 79-132 287-340 (410)
500 cd07104 ALDH_BenzADH-like ALDH 21.1 5.9E+02 0.013 23.2 8.3 79 234-320 98-188 (431)
No 1
>KOG1177 consensus Long chain fatty acid acyl-CoA ligase [Lipid transport and metabolism]
Probab=100.00 E-value=1.1e-45 Score=313.94 Aligned_cols=304 Identities=23% Similarity=0.335 Sum_probs=258.8
Q ss_pred CCCCCCCCCCCCHHHHHhhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHH
Q 019348 17 PPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICF 96 (342)
Q Consensus 17 ~~~~~~~~~~~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~ 96 (342)
.+.++.. .|+++.++-.+++.||+.|+++...+-+.||+|+.+.++.+|..|.+.|+++||+|++..||+.+|+...
T Consensus 43 ~~ipl~~---~Tigq~l~~~t~~v~dkea~Vf~~eg~R~Tf~~~~~ev~slAaGll~lGL~kGDrVgvwgpN~~~w~l~~ 119 (596)
T KOG1177|consen 43 SQIPLDS---ETIGQLLETTTERVPDKEAAVFDHEGIRLTFSEFVSEVESLAAGLLSLGLKKGDRVGVWGPNSYEWVLCQ 119 (596)
T ss_pred CCCCccc---ccHHHHHHHHhhccCcceEEEEeeccchhhHHHHHHHHHHHHhhHHhhcCCCCCEEEEecCChHHHHHHH
Confidence 3345544 4999999999999999999998777888999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCeEeccCCCCCHHHHHHHhhhcCceEEEEcccchh-----hhhcc-------C-----------CC-eEEecC
Q 019348 97 LGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWD-----KVKDL-------N-----------LP-AVLLGS 152 (342)
Q Consensus 97 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~-----~~~~~-------~-----------~~-~~~~~~ 152 (342)
+||.++|.+.+++||.+..++++..|++.+++++|+.+.+.. .+.++ + .. ++..++
T Consensus 120 lA~A~AG~v~v~~NP~Yq~~elr~~L~k~~~k~l~~p~~~k~~ny~~~l~~icPEv~~~~~G~lkS~~lp~lthvi~~~e 199 (596)
T KOG1177|consen 120 LACARAGLVLVNLNPAYQSEELRYVLKKVGCKALFAPPQFKTQNYYETLLEICPEVMRGDPGQLKSELLPELTHVILADE 199 (596)
T ss_pred HHHHHhceEEeccCcccccHHHHHHHhhcCeEEEEccchhhhchHHHHHHHhhHHhhcCCCccccccccccceEEEecCC
Confidence 999999999999999999999999999999999998754332 22222 0 11 222222
Q ss_pred CCccccccccccccccccHHHHHhccCCCC----CCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhh
Q 019348 153 KDKVSSSGLISRSSKIVSFHDLIELSGSVT----DIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQ 228 (342)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~ 228 (342)
+ ....+...+.+++....+.. ........|++.+.|.|||||||.|||+.+||.|+++++.. ...
T Consensus 200 d---------~~~~Ga~~~sev~~~~s~~~~a~l~~~~k~~~pdd~~niQFTSGTTG~PKgatLsH~~~~Nna~~--vg~ 268 (596)
T KOG1177|consen 200 D---------HPLPGAFLLSEVLKAASKEERAKLADMSKWLSPDDAVNIQFTSGTTGAPKGATLSHYNFLNNARA--VGA 268 (596)
T ss_pred C---------CcCCCceehHHHHHhcchHHHHHHHhhhhhcCCCCceEEEeccCCCCCCcceeeehhhhhhhHHH--HHH
Confidence 2 34566667777776554311 11234567899999999999999999999999999999666 444
Q ss_pred ccccCCCeEEEEccchhHHHHHHHHHHHHhhcCCeEEEc-cCCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccC
Q 019348 229 ELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSM-GKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFD 307 (342)
Q Consensus 229 ~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~-~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~ 307 (342)
..+.++++++++..|++|.+|....++.+|..|+|++++ +.|++.+.++.|.++++|.++.+|+++..|++.+.....+
T Consensus 269 r~g~~e~~~i~~~~Pl~H~~G~~~~~ma~l~~gat~Vfp~~~f~~k~alqai~~ekcT~l~gtPtM~~Dlln~~~~~~~~ 348 (596)
T KOG1177|consen 269 RAGYNEKHRICIPNPLYHCFGCVLGVMAALMHGATIVFPAPSFDPKDALQAISNEKCTTLYGTPTMFVDLLNIPQKQQVD 348 (596)
T ss_pred HhCcCcceEEEecCchHHHHHHHHHHHHHHHhCcEEEeeCCCCChHHHHHHHHhhceEEEecChHHHHHHhcchhhccCc
Confidence 455567889999999999999889999999999999997 6799999999999999999999999999999999999999
Q ss_pred CCCceEEEeecccCCHHHHHHHHHhCC
Q 019348 308 ISSLKLVGSGAAPLGKELMEDCQKNIP 334 (342)
Q Consensus 308 l~~lr~~~~gG~~l~~~~~~~~~~~~~ 334 (342)
++++|.++.||+++|+++++.+.+...
T Consensus 349 ~s~lr~~vigGa~~s~eLlk~iv~~~~ 375 (596)
T KOG1177|consen 349 LSSLRKGVIGGAPVSPELLKLIVNQMN 375 (596)
T ss_pred hhhhhhheeCCCCCCHHHHHHHHHhhC
Confidence 999999999999999999999998543
No 2
>COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=1.4e-43 Score=329.10 Aligned_cols=303 Identities=33% Similarity=0.451 Sum_probs=252.4
Q ss_pred CCHHHHHhhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeE
Q 019348 27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA 106 (342)
Q Consensus 27 ~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~ 106 (342)
.++.+.+.+.+..+|+++|+++.+...++||+||.++++++|..|++.|+++||+|+|+++|+++++++++||+++|+++
T Consensus 11 ~~~~~~l~~~a~~~~~~~a~~~~~~~~~~Ty~el~~~~~~~A~~L~~~~v~~gdrVail~~N~~e~~~~~~a~~~~Gav~ 90 (534)
T COG0318 11 LTLASLLERAARRNPDRPALIFLGRGGRLTYRELDRRANRLAAALQALGVKPGDRVAILLPNSPEFLIAFLAALRAGAVA 90 (534)
T ss_pred ccHHHHHHHHHHhCCCceEEEEcCCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhcCEEE
Confidence 78999999999999999999998433349999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhccCC----CeEEecCCCcccccccccccccc--ccHHHHHhccCC
Q 019348 107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNL----PAVLLGSKDKVSSSGLISRSSKI--VSFHDLIELSGS 180 (342)
Q Consensus 107 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 180 (342)
+|++|.+..+++.++++.+++++++++.+.......... ........ ..... ..+++.......
T Consensus 91 vpln~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~ 160 (534)
T COG0318 91 VPLNPRLTPRELAYILNDAGAKVLITSAEFAALLEAVAEALPVVLVVLLVG----------DADDRLPITLEALAAEGPG 160 (534)
T ss_pred eecCcccCHHHHHHHHHhcCCeEEEEcccchhHHHHHhccCCcceEEEecc----------cccccccccHHHHhhccCC
Confidence 999999999999999999999999999874444333221 11111111 00010 245555333221
Q ss_pred CCCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccc--cCCCeEEEEccchhHHHHHHHHHHHHh
Q 019348 181 VTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELV--GELDHVVLCVLPMFHVFGLSVILYDQL 258 (342)
Q Consensus 181 ~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~--~~~~d~~~~~~p~~~~~g~~~~~~~~l 258 (342)
.........++++++++|||||||.||||++||+|+..+... ....+. ...+|++++++|++|.+|+...++.++
T Consensus 161 -~~~~~~~~~~~d~a~i~yTSGTTG~PKgv~~th~~~~~~~~~--~~~~~~~~~~~~d~~l~~lPl~H~~Gl~~~~~~~~ 237 (534)
T COG0318 161 -PDADARPVDPDDLAFLLYTSGTTGLPKGVVLTHRNLLANAAG--IAAALGGGLTPDDVVLSWLPLFHIFGLIVGLLAPL 237 (534)
T ss_pred -cccccCCCCCCCEEEEEeCCCCCCCCCEeEEecHhHHHHHHH--HHHHhcccCCCCceEEEecChHHHHHHHHHHHHHH
Confidence 111122267899999999999999999999999999988555 444444 688899999999999999977777889
Q ss_pred hcCCeEEEcc--CCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCC-ceEEEeecccCCHHHHHHHHHhCCC
Q 019348 259 QKGNCVVSMG--KFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISS-LKLVGSGAAPLGKELMEDCQKNIPG 335 (342)
Q Consensus 259 ~~G~~~v~~~--~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~-lr~~~~gG~~l~~~~~~~~~~~~~~ 335 (342)
..|+++++.+ .+++..++..+.++++|++.++|+++..++.+......++.+ ||.++.||++++++++++|+++|++
T Consensus 238 ~~G~~~v~~~~~~f~~~~~~~~i~~~~~t~~~~vPt~~~~ll~~~~~~~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~~~ 317 (534)
T COG0318 238 LGGGTLVLLSPEPFDPEEVLWLIEKYKVTVLSGVPTFLRELLDNPEKDDDDLSSSLRLVLSGGAPLPPELLERFEERFGP 317 (534)
T ss_pred HcCCEEEeCCCCCcCHHHHHHHHHHhcceEEecchHHHHHHHhCCccCccccccceEEEEecCCcCCHHHHHHHHHHhCC
Confidence 9999999998 699999999999999999999999999999998877777776 9999999999999999999999986
Q ss_pred CcccccC
Q 019348 336 ATIFQKI 342 (342)
Q Consensus 336 ~~l~~~Y 342 (342)
..++++|
T Consensus 318 ~~i~~~Y 324 (534)
T COG0318 318 IAILEGY 324 (534)
T ss_pred CceEEee
Confidence 6788887
No 3
>PTZ00342 acyl-CoA synthetase; Provisional
Probab=100.00 E-value=6.9e-44 Score=338.98 Aligned_cols=333 Identities=17% Similarity=0.270 Sum_probs=251.4
Q ss_pred CCCCCceeecCCCCCCCCCCCCCCHHHHHhhhcccCCCceEEEeCCC---CcceeHHHHHHHHHHHHHHHHHc---CCCC
Q 019348 5 GYGRDGIYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADS---DESLSFSQFKSIVIKVSHSFRHL---GITK 78 (342)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~p~~~a~~~~~~---~~~~Ty~~l~~~~~~la~~L~~~---g~~~ 78 (342)
...++++|+..+.....+.....|+.++|.+.++++|+++|+++.+. .+++||+|+.+++.++|+.|.+. |+++
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~p~~~Al~~~~~g~~~~~~Ty~el~~~v~~~A~~L~~~~~~Gv~~ 118 (746)
T PTZ00342 39 NENESSVYCMKDHKKKSSLYVYKHIMKLLLEKYKLNNNKIAIVEHSCGEPQNYITYGNFFKKVLSFSHSLNTYEGKGIPE 118 (746)
T ss_pred CCCCCCceecCchhhcccccccchHHHHHHHHHhhcCCceeEeccCCCCCceeeeHHHHHHHHHHHHHHHHHHhhcCCCc
Confidence 34456677655544444444447999999999999999999997422 37899999999999999999874 9999
Q ss_pred C-----------CEEEEECCCCChHHHHHHHHHHhCCeEeccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhccC---
Q 019348 79 K-----------DVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN--- 144 (342)
Q Consensus 79 g-----------~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~--- 144 (342)
| |+|+|+++|+++|+++++||+++|++.||+++.++.+++.+++++++++++|++.+..+.+.+..
T Consensus 119 g~~~~~~~~g~~d~V~i~~~N~~ew~~~~lA~~~~Gav~Vpl~~~~~~~el~~il~~s~~~~lv~~~~~~~~l~~~~~~~ 198 (746)
T PTZ00342 119 KKYNEEQNNGKFKLLGLYGSNSINWLVADLACMLSGVTTLVMHSKFSIDVIVDILNETKLEWLCLDLDLVEGLLERKNEL 198 (746)
T ss_pred CccccccccccccEEEEEcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHhcCCCCEEEEcHHHHHHHHHhhccC
Confidence 8 99999999999999999999999999999999999999999999999999999877766554321
Q ss_pred --CC-eEEecCCCccc--c--------------cccc-----------------------------------------cc
Q 019348 145 --LP-AVLLGSKDKVS--S--------------SGLI-----------------------------------------SR 164 (342)
Q Consensus 145 --~~-~~~~~~~~~~~--~--------------~~~~-----------------------------------------~~ 164 (342)
.+ ++.++...... . .... ..
T Consensus 199 ~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 278 (746)
T PTZ00342 199 PHLKKLIILDTLIKSKEININKEEKNNGSNVNNNGNKNNKEEQKGNDLSNELEDISLGPLEYDKEKLEKIKDLKEKAKKL 278 (746)
T ss_pred CCceEEEEECCCCcccccccccccccccccccccccccccccccccccccccccccccccccchhhhhhhHHHHHHhhcC
Confidence 12 33333211000 0 0000 00
Q ss_pred ccccccHHHHHhccCCCCCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccch
Q 019348 165 SSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPM 244 (342)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~ 244 (342)
......|++...... .........++++++|+|||||||.||||++||+|+.+.+..............|++++.+|+
T Consensus 279 ~~~~~~~~~~~~~~~--~~~~~~~~~~dd~a~IiYTSGTTG~PKGVmlTH~nl~~~~~~~~~~~~~~~~~~d~~ls~LPL 356 (746)
T PTZ00342 279 GISIILFDDMTKNKT--TNYKIQNEDPDFITSIVYTSGTSGKPKGVMLSNKNLYNTVVPLCKHSIFKKYNPKTHLSYLPI 356 (746)
T ss_pred CCEEEEHHHHHhhcc--cCCCCCCCCccceEEEEEcCCCCCCCCEEEEccHHHHHHHHHHhhcccccCCCCCeEEEeCcH
Confidence 000112233222211 111223456789999999999999999999999999988654322111112356899999999
Q ss_pred hHHHHHHHHHHHHhhcCCeEEEccCCCHHHHHHHHHhccceEEEecHHHHHHHHcC--------CCCCc-----------
Q 019348 245 FHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKN--------SLVRK----------- 305 (342)
Q Consensus 245 ~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~--------~~~~~----------- 305 (342)
+|++++ ...+.++..|+++++.+. ++..+++.|+++++|+++++|.+|+.+.+. +..+.
T Consensus 357 ~Hi~~~-~~~~~~l~~G~~i~~~~~-~~~~l~~di~~~~pT~~~~VP~v~~~i~~~i~~~~~~~~~~~~~~~~~a~~~~~ 434 (746)
T PTZ00342 357 SHIYER-VIAYLSFMLGGTINIWSK-DINYFSKDIYNSKGNILAGVPKVFNRIYTNIMTEINNLPPLKRFLVKKILSLRK 434 (746)
T ss_pred HHHHHH-HHHHHHHHcCCEEEEeCC-CHHHHHHHHHHhCCcEEEchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHH
Confidence 999999 567788999999999875 899999999999999999999999988752 10000
Q ss_pred -----------------------cCCCCceEEEeecccCCHHHHHHHHHhCCCCcccccC
Q 019348 306 -----------------------FDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQKI 342 (342)
Q Consensus 306 -----------------------~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~Y 342 (342)
.-.++||.+++||+++++++.++|++.+| ++++++|
T Consensus 435 ~~~~~~~~~~~~~~~~v~~kir~~lg~~lr~~~sGGapl~~~~~~~~~~~~g-~~i~~gY 493 (746)
T PTZ00342 435 SNNNGGFSKFLEGITHISSKIKDKVNPNLEVILNGGGKLSPKIAEELSVLLN-VNYYQGY 493 (746)
T ss_pred HhhcCCcchHHHHHHHHHHHHHHhhCCCeEEEEEcCCCCCHHHHHHHHHhcC-CCEEEee
Confidence 01268999999999999999999999887 8999988
No 4
>COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]
Probab=100.00 E-value=8.5e-44 Score=319.70 Aligned_cols=292 Identities=24% Similarity=0.348 Sum_probs=245.0
Q ss_pred Hhhhcc-cCCCceEEEeCCC---CcceeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCCChHHHHHHHHHHhCCeEe
Q 019348 33 LFRNSA-SYSSKLALIDADS---DESLSFSQFKSIVIKVSHSFRH-LGITKKDVVLIFAPNSIHFPICFLGVIAIGAIAS 107 (342)
Q Consensus 33 l~~~~~-~~p~~~a~~~~~~---~~~~Ty~~l~~~~~~la~~L~~-~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v 107 (342)
+.+... ..+|+.|++..++ .+++||+||.+.+.++|..|++ .|+ +||+|++++|+.++.++++|||+++|++.+
T Consensus 15 ~dr~~~~~~~~~~aii~~~e~~~~~~~Ty~~L~~~v~r~A~~L~~~~gv-kGDrV~iymp~~pe~~~a~LA~~riGAI~~ 93 (528)
T COG0365 15 LDRHLEADRPDDTAIIFDGEDGLFRELTYGDLRREVARLANALKDLGGV-KGDRVAIYMPNSPEAVIALLATARIGAIPA 93 (528)
T ss_pred hhhhhhccCCCceEEEEEcCCCCceEEEHHHHHHHHHHHHHHHHHhCCC-CCCEEEEEcCCCHHHHHHHHHHHHcCCEEe
Confidence 455544 3478999987642 2789999999999999999986 578 999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhccCCCe--------EEecCCCccccccccccccccccHHHHHhccC
Q 019348 108 TANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPA--------VLLGSKDKVSSSGLISRSSKIVSFHDLIELSG 179 (342)
Q Consensus 108 ~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (342)
|+.+..+++++...+++++++++|+++......+...... +++... .. ..|.+.++...
T Consensus 94 ~vf~~f~~~al~~Ri~d~~~k~vit~d~~~~~gk~~~~~~~~~~~~~~~iv~~r------------~~-~~~~~~~~~~~ 160 (528)
T COG0365 94 VVSPGLSAEAVADRIADLGPKVLIADDGTFRNGKEIALLEDADAVLSSVVVVPR------------LG-LWYDEAVEKAS 160 (528)
T ss_pred ecccCCCHHHHHHHHHccCCCEEEEecccccccccccchhHHHHhhcceEEecc------------cc-ccHHHHhhccC
Confidence 9999999999999999999999999987776655443210 111111 11 56777776654
Q ss_pred CCCCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHHHHHHHHhh
Q 019348 180 SVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQ 259 (342)
Q Consensus 180 ~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~ 259 (342)
..........+|+++|+|||||||+||||+++|+.++...... ....+...++|++++..++.|++|....++.+|.
T Consensus 161 --~~~~~~~~~~~dpl~ilYTSGTTG~PKgv~H~~gg~l~~~~~~-~~~~~~~~~~Dv~w~~ad~GW~~g~~~~v~~pL~ 237 (528)
T COG0365 161 --EKFEFEPLPADDPLFLLYTSGTTGKPKGIVHSHGGYLVEHRLT-AKFHGDLLPGDRFWNSSDPGWIYGLWYSVFSPLA 237 (528)
T ss_pred --CCCCccccCCCCeEEEEeCCCCCCCCceEEEeCchHHHHHHHH-HHHhhCCCCCCEEEeCCCchhhhCchHHHHHHHh
Confidence 3444445888999999999999999999999999777664322 3334445689999999999999999888999999
Q ss_pred cCCeEEEccC--C-CHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCCHHHHHHHHHhCCCC
Q 019348 260 KGNCVVSMGK--F-DIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGA 336 (342)
Q Consensus 260 ~G~~~v~~~~--~-~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~ 336 (342)
+|+++++.+. + ++..++++++++++|.+++.|+.+++|.+....++.++++||.+.++||||+++.++++.+.++ +
T Consensus 238 ~Gat~~~~eg~p~~~~~~~~~~ie~~~vt~~~tsPT~~R~l~~~g~~~~~dlssLr~~~SaGEPLnpe~~~w~~~~~g-~ 316 (528)
T COG0365 238 SGATTVLYDGRPFYSPERLWEALEKYKVTIFGTSPTFLRRLMKLGLGEPYDLSSLRVLGSAGEPLNPEAFEWFYSALG-V 316 (528)
T ss_pred cCCeEEEeCCCCCCCHHHHHHHHHHhCCceEeeCHHHHHHHHhcCCcccccchhheeeeccCCCCCHHHHHHHHHHhC-C
Confidence 9999998843 3 4999999999999999999999999999988767789999999999999999999999999998 9
Q ss_pred cccccC
Q 019348 337 TIFQKI 342 (342)
Q Consensus 337 ~l~~~Y 342 (342)
+|.+.|
T Consensus 317 ~i~d~~ 322 (528)
T COG0365 317 WILDIY 322 (528)
T ss_pred CEeccc
Confidence 999887
No 5
>KOG1176 consensus Acyl-CoA synthetase [Lipid transport and metabolism]
Probab=100.00 E-value=1.2e-42 Score=313.86 Aligned_cols=296 Identities=38% Similarity=0.609 Sum_probs=243.1
Q ss_pred cCCCc-eEEEeCCC-CcceeHHHHHHHHHHHHHHHHHcC--CCCCCEEEEECCCCChHHHHHHHHHHhCCeEeccCCCCC
Q 019348 39 SYSSK-LALIDADS-DESLSFSQFKSIVIKVSHSFRHLG--ITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYT 114 (342)
Q Consensus 39 ~~p~~-~a~~~~~~-~~~~Ty~~l~~~~~~la~~L~~~g--~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~ 114 (342)
.++++ +.+++.+. ++.+||+|+++++.++|..|.+.| +++||+|++++||++++.++++||+..|++..+++|.+.
T Consensus 28 ~~~~~~~~~i~~~~~g~~~T~~e~~~~~~r~A~~L~~~~~~i~~gDvV~i~~pNs~~~~~~~la~~~~Ga~~~~~Np~~~ 107 (537)
T KOG1176|consen 28 VYLDRNTSLVYQDSDGRELTYSELHDRCRRLASALSELGLGIKKGDVVGILAPNTPEFVELALAVPMAGAVLNPLNPRLT 107 (537)
T ss_pred ccccCcceEEEecCCCcEEcHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEEcCCCHHHHHHHHHHHHcCccccccCcccC
Confidence 33444 66766542 599999999999999999999775 889999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcCceEEEEcccchhhhhccC----CCeEEecCCCcccccccccccccccc-HHHHHhccCCCCCCCCCCC
Q 019348 115 VSELSKQVKDSNPKLVITVPELWDKVKDLN----LPAVLLGSKDKVSSSGLISRSSKIVS-FHDLIELSGSVTDIPDVSV 189 (342)
Q Consensus 115 ~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 189 (342)
+.++...++.++++++|++.+....+.+.. ...+.+....... .......... ++.++.... ... ....
T Consensus 108 ~~ei~~~~~~s~~kiif~d~~~~~~i~~~~~~~~~~i~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~--~~~-~~~~ 181 (537)
T KOG1176|consen 108 ASEIAKQLKDSKPKLIFVDEDFYDKISEATSKLALKIIVLTGDEGVI---SISDLVEDLDAFEDLMPEGL--PDG-IRPV 181 (537)
T ss_pred HHHHHHHHHhcCCeEEEEcCchHHHHHHHHhhcCCceEEEecccCcc---ccccccccccchhhccccCC--Ccc-cccC
Confidence 999999999999999999998888775443 3444444321000 0011111111 445444433 222 4456
Q ss_pred CCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHHHHHHHHhhcCCeEEEccC
Q 019348 190 KQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGK 269 (342)
Q Consensus 190 ~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~ 269 (342)
..+|++.|.|||||||.||||++||+++..+... ..........|+.++.+|++|.+|+...+...+..|+++++.+.
T Consensus 182 ~~dd~~~il~SSGTTg~PKgV~lsHr~~~~~~~~--~~~~~~~~~~~v~l~~lPl~H~~Gl~~~~~~~~~~~~~ii~~~~ 259 (537)
T KOG1176|consen 182 SEDDTAAILYSSGTTGLPKGVVLSHRNLIANTLS--IKIGWELTSDDVYLCTLPLFHIYGLITLLLSLLAGGTTIICLRK 259 (537)
T ss_pred CCCCeEEEecCCCCCCCCceEEEecHHHHHHHHH--hhhcccCCCCceEEEechHHHHhHHHHHHHHHHhCCceEEECCC
Confidence 6799999999999999999999999999988444 33344446689999999999999996666667888888888888
Q ss_pred CCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCCHHHHHHHHHhCCCCcccccC
Q 019348 270 FDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQKI 342 (342)
Q Consensus 270 ~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~Y 342 (342)
|++..+++.+++|++|+++++|.++..|++.+...+.+++++|.+.+||+++++.+.+++++++|+..+.++|
T Consensus 260 f~~~~~~~~i~kykvt~~~~vP~~~~~l~~~p~~~~~~l~sl~~v~~gga~~~~~~~~~~~~~l~~~~v~q~Y 332 (537)
T KOG1176|consen 260 FDAELFLDLIEKYKVTHLFLVPPVLNMLAKSPIVKKYDLSSLRSVLSGGAPLSPATLEKVKERLPNVTVIQGY 332 (537)
T ss_pred CCHHHHHHHHHHhCEEEEEcChHHHHHHhcCCccCcccCCccEEEEecCCCCCHHHHHHHHHhCCCceEEEee
Confidence 9999999999999999999999999999999878889999999999999999999999999999988999988
No 6
>PLN02246 4-coumarate--CoA ligase
Probab=100.00 E-value=5.7e-42 Score=320.29 Aligned_cols=317 Identities=37% Similarity=0.630 Sum_probs=261.7
Q ss_pred eeecCCCCCCCCCCCCCCHHHHHhhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCC
Q 019348 11 IYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSI 90 (342)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~ 90 (342)
+++......+.+.. +|+.+.+.++++++||++|+++.+.++++||+||.++++++|+.|.+.|+++||+|+++++|+.
T Consensus 9 ~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~a~~~~~~~~~~ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~~~~ 86 (537)
T PLN02246 9 IFRSKLPDIYIPNH--LPLHDYCFERLSEFSDRPCLIDGATGRVYTYADVELLSRRVAAGLHKLGIRQGDVVMLLLPNCP 86 (537)
T ss_pred EecCCCCCCCCCCC--CcHHHHHHHHHHhCCCCeEEEecCCCceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCh
Confidence 44455555555655 7999999999999999999998655689999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhCCeEeccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhccC----CCeEEecCCCcccccccccccc
Q 019348 91 HFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN----LPAVLLGSKDKVSSSGLISRSS 166 (342)
Q Consensus 91 ~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 166 (342)
+++++++||+++|++++|++|..+.+++..+++.++++++++++.....+.+.. ...+.++.. ..
T Consensus 87 ~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~i~~~~~-----------~~ 155 (537)
T PLN02246 87 EFVLAFLGASRRGAVTTTANPFYTPAEIAKQAKASGAKLIITQSCYVDKLKGLAEDDGVTVVTIDDP-----------PE 155 (537)
T ss_pred HHHHHHHHHHHcCEEEecCCCCCCHHHHHHHHHhcCCcEEEEccchHHHHHHHhhcCCceEEEeCCC-----------CC
Confidence 999999999999999999999999999999999999999999987766554332 223333221 11
Q ss_pred ccccHHHHHhccCCCCCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhh--hhccccCCCeEEEEccch
Q 019348 167 KIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISA--HQELVGELDHVVLCVLPM 244 (342)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~--~~~~~~~~~d~~~~~~p~ 244 (342)
....+.++..... .........++++++++|||||||.||+|+++|+++......... ...+.+..+|++++..|+
T Consensus 156 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~TSGtTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~pl 233 (537)
T PLN02246 156 GCLHFSELTQADE--NELPEVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPM 233 (537)
T ss_pred CceeHHHHhcCCC--CCCCCCCCCccCEEEEEeCCCCCCCCceEEEeHHHHHHHHHHHhhccccccCCCCCcEEEEeech
Confidence 2233444433222 122233456789999999999999999999999999876433211 113446788999999999
Q ss_pred hHHHHHHHHHHHHhhcCCeEEEccCCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCCHH
Q 019348 245 FHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKE 324 (342)
Q Consensus 245 ~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~ 324 (342)
+|.+++...++.++..|+++++.+.+++..+++.++++++|++.++|.++..|.+.......+++++|.+++||++++++
T Consensus 234 ~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~gg~~l~~~ 313 (537)
T PLN02246 234 FHIYSLNSVLLCGLRVGAAILIMPKFEIGALLELIQRHKVTIAPFVPPIVLAIAKSPVVEKYDLSSIRMVLSGAAPLGKE 313 (537)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEeCCCCHHHHHHHHHHhCceEEEcchHHHHHHhcCccccccCccceeEEEEecCcCCHH
Confidence 99999866788999999999999999999999999999999999999999999987766666789999999999999999
Q ss_pred HHHHHHHhCCCCcccccC
Q 019348 325 LMEDCQKNIPGATIFQKI 342 (342)
Q Consensus 325 ~~~~~~~~~~~~~l~~~Y 342 (342)
+.+.+++.|++..+++.|
T Consensus 314 ~~~~~~~~~~~~~~~~~Y 331 (537)
T PLN02246 314 LEDAFRAKLPNAVLGQGY 331 (537)
T ss_pred HHHHHHHHcCCCeEeccc
Confidence 999999999878888877
No 7
>PRK07788 acyl-CoA synthetase; Validated
Probab=100.00 E-value=2.5e-42 Score=323.54 Aligned_cols=300 Identities=22% Similarity=0.247 Sum_probs=251.8
Q ss_pred CCHHHHHhhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeE
Q 019348 27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA 106 (342)
Q Consensus 27 ~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~ 106 (342)
.++.++|.+.++.+||++|+++. ++.+||+||.++++++|+.|.+.|+++||+|+++++|+.+++++++||+++|+++
T Consensus 49 ~~~~~~~~~~a~~~pd~~Al~~~--~~~~Ty~el~~~~~~la~~L~~~gi~~gd~V~i~~~n~~~~~~~~la~~~~G~~~ 126 (549)
T PRK07788 49 GPFAGLVAHAARRAPDRAALIDE--RGTLTYAELDEQSNALARGLLALGVRAGDGVAVLARNHRGFVLALYAAGKVGARI 126 (549)
T ss_pred chHHHHHHHHHHHCCCceEEEEC--CCceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCEE
Confidence 48999999999999999999987 7899999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhccC-----CCeEEecCCCccccccccccccccccHHHHHhccCCC
Q 019348 107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN-----LPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSV 181 (342)
Q Consensus 107 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (342)
+|+++..+.+++.++++.+++++++++++....+.... ...+....... ......+..++++.....
T Consensus 127 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~-- 198 (549)
T PRK07788 127 ILLNTGFSGPQLAEVAAREGVKALVYDDEFTDLLSALPPDLGRLRAWGGNPDDD------EPSGSTDETLDDLIAGSS-- 198 (549)
T ss_pred EEeCCCCCHHHHHHHHHhcCCcEEEECchhHHHHHhhccccccceEEEEecCcc------ccCCcCcccHHHHhcCCC--
Confidence 99999999999999999999999999988766654332 11111111100 011234556777665432
Q ss_pred CCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHHHHHHHHhhcC
Q 019348 182 TDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKG 261 (342)
Q Consensus 182 ~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G 261 (342)
.. ......++.++++|||||||.||+|.++|.++...+.. ....+....+|++++..|++|.+|+ ..++.++..|
T Consensus 199 ~~--~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~--~~~~~~~~~~d~~~~~~p~~~~~g~-~~~~~~l~~G 273 (549)
T PRK07788 199 TA--PLPKPPKPGGIVILTSGTTGTPKGAPRPEPSPLAPLAG--LLSRVPFRAGETTLLPAPMFHATGW-AHLTLAMALG 273 (549)
T ss_pred CC--CCCCCCCCCcEEEECCCCCCCCCEEeccCccHHHHHHH--HHhhCCCCcCCeEEEccchHHHHHH-HHHHHHHHhC
Confidence 11 11234567899999999999999999999999887544 3334456778999999999999998 6678899999
Q ss_pred CeEEEccCCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCC--CccCCCCceEEEeecccCCHHHHHHHHHhCCCCccc
Q 019348 262 NCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLV--RKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIF 339 (342)
Q Consensus 262 ~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~--~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~ 339 (342)
+++++...+++..+++.++++++|++.++|++++.+++.... ...++++||.+++||+++++++.+++++.|+ ..++
T Consensus 274 ~~~v~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~-~~l~ 352 (549)
T PRK07788 274 STVVLRRRFDPEATLEDIAKHKATALVVVPVMLSRILDLGPEVLAKYDTSSLKIIFVSGSALSPELATRALEAFG-PVLY 352 (549)
T ss_pred CEEEECCCCCHHHHHHHHHHhCCcEEEEHHHHHHHHHhCcccccCCCCCCceeEEEEeCCCCCHHHHHHHHHHhC-ccce
Confidence 999999889999999999999999999999999999987654 4567899999999999999999999999998 7899
Q ss_pred ccC
Q 019348 340 QKI 342 (342)
Q Consensus 340 ~~Y 342 (342)
+.|
T Consensus 353 ~~Y 355 (549)
T PRK07788 353 NLY 355 (549)
T ss_pred ecc
Confidence 888
No 8
>PLN02574 4-coumarate--CoA ligase-like
Probab=100.00 E-value=1.4e-41 Score=318.94 Aligned_cols=326 Identities=37% Similarity=0.618 Sum_probs=257.9
Q ss_pred CceeecCCCCCCCCCCCCCCHHHHHhhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECC
Q 019348 9 DGIYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRH-LGITKKDVVLIFAP 87 (342)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~-~g~~~g~~V~i~~~ 87 (342)
..++.+..++.++|..+..++.+.+... ..+|+++|+++.+.+.++||+||.++++++|+.|++ .|+++||+|+++++
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~~~G~~~gd~V~i~~~ 100 (560)
T PLN02574 22 TGIYSSKHPPVPLPSDPNLDAVSFIFSH-HNHNGDTALIDSSTGFSISYSELQPLVKSMAAGLYHVMGVRQGDVVLLLLP 100 (560)
T ss_pred CeeecCCCCCCCCCCCCCCCHHHHHhcC-cccCCCCEEEECCCCCcccHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECC
Confidence 4555555444455554335666666655 678999999987555689999999999999999998 99999999999999
Q ss_pred CCChHHHHHHHHHHhCCeEeccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhccCCCeEEecCCCccccccccccccc
Q 019348 88 NSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSK 167 (342)
Q Consensus 88 n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (342)
|+.+++++++||+++|++++|++|..+.+++.++++.+++++++++.+....+.......+.+....... .....
T Consensus 101 n~~~~~~~~la~~~~G~v~v~l~p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~ 175 (560)
T PLN02574 101 NSVYFPVIFLAVLSLGGIVTTMNPSSSLGEIKKRVVDCSVGLAFTSPENVEKLSPLGVPVIGVPENYDFD-----SKRIE 175 (560)
T ss_pred CcchHHHHHHHHHHhCeEEeCcCcccCHHHHHHHHHhcCCEEEEECHHHHHHHHhcCCcEEecCcccccc-----cCccC
Confidence 9999999999999999999999999999999999999999999999877666655444444332211000 01112
Q ss_pred cccHHHHHhccCCCCCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhh--hccc-cCCCeEEEEccch
Q 019348 168 IVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAH--QELV-GELDHVVLCVLPM 244 (342)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~--~~~~-~~~~d~~~~~~p~ 244 (342)
...|.++..... .........++++++|+|||||||.||||++||+++...+..+... .... ...+++++..+|+
T Consensus 176 ~~~~~~~~~~~~--~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl 253 (560)
T PLN02574 176 FPKFYELIKEDF--DFVPKPVIKQDDVAAIMYSSGTTGASKGVVLTHRNLIAMVELFVRFEASQYEYPGSDNVYLAALPM 253 (560)
T ss_pred cccHHHHhhcCC--cccccCCCCcCCEEEEEcCCCccCCCcEEEEeHHHHHHHHHHHHhccccccccCCCCcEEEEecch
Confidence 234555544332 2222234467899999999999999999999999998875443211 1111 2356889999999
Q ss_pred hHHHHHHHHHHHHhhcCCeEEEccCCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCC-CccCCCCceEEEeecccCCH
Q 019348 245 FHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLV-RKFDISSLKLVGSGAAPLGK 323 (342)
Q Consensus 245 ~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~-~~~~l~~lr~~~~gG~~l~~ 323 (342)
+|.+|+...++.++..|+++++.+++++..+++.++++++|++.++|.++..|.+.... ...+++++|.+++||+++++
T Consensus 254 ~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~lr~~~~gg~~l~~ 333 (560)
T PLN02574 254 FHIYGLSLFVVGLLSLGSTIVVMRRFDASDMVKVIDRFKVTHFPVVPPILMALTKKAKGVCGEVLKSLKQVSCGAAPLSG 333 (560)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEecCCCHHHHHHHHHHcCCeEEecCCHHHHHHHhCccccccCccccceEEEEecccCCH
Confidence 99999977788889999999999999999999999999999999999999999987643 34578899999999999999
Q ss_pred HHHHHHHHhCCCCcccccC
Q 019348 324 ELMEDCQKNIPGATIFQKI 342 (342)
Q Consensus 324 ~~~~~~~~~~~~~~l~~~Y 342 (342)
++.++|++.++++++++.|
T Consensus 334 ~~~~~~~~~~~~~~v~~~Y 352 (560)
T PLN02574 334 KFIQDFVQTLPHVDFIQGY 352 (560)
T ss_pred HHHHHHHHHCCCCcEEecc
Confidence 9999999999778999988
No 9
>PLN02860 o-succinylbenzoate-CoA ligase
Probab=100.00 E-value=1.5e-42 Score=325.65 Aligned_cols=308 Identities=24% Similarity=0.271 Sum_probs=244.9
Q ss_pred CCCHHHHHhhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCe
Q 019348 26 SFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAI 105 (342)
Q Consensus 26 ~~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~ 105 (342)
+.++.++|.+.++++|+++|+++. ++.+||+||.+++.++|..|.+.|+++||+|+++++|+++++++++||+++|++
T Consensus 6 ~~~~~~~~~~~~~~~p~~~a~~~~--~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~v~~~n~~~~~~~~la~~~~Gav 83 (563)
T PLN02860 6 QAHICQCLTRLATLRGNAVVTISG--NRRRTGHEFVDGVLSLAAGLLRLGLRNGDVVAIAALNSDLYLEWLLAVACAGGI 83 (563)
T ss_pred hhHHHHHHHHHHHhcCCceEEecC--CceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHhhccEE
Confidence 368999999999999999999986 789999999999999999999999999999999999999999999999999999
Q ss_pred EeccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhcc---C---CCeEEecCCCccccccccccccccccHHHHHhccC
Q 019348 106 ASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDL---N---LPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSG 179 (342)
Q Consensus 106 ~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (342)
++|+++.++.+++.++++++++++++++++........ . ...++......... ..........+++.....
T Consensus 84 ~vpl~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 160 (563)
T PLN02860 84 VAPLNYRWSFEEAKSAMLLVRPVMLVTDETCSSWYEELQNDRLPSLMWQVFLESPSSSV---FIFLNSFLTTEMLKQRAL 160 (563)
T ss_pred EEeCCcccCHHHHHHHHHhcCceEEEEecccchHHHHHhhccCCceeEEEEecCccccc---ccchhhccccchhccCcc
Confidence 99999999999999999999999999987653322211 1 11111111100000 000001111111111100
Q ss_pred CCCCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHHHHHHHHhh
Q 019348 180 SVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQ 259 (342)
Q Consensus 180 ~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~ 259 (342)
. .........++++++|+|||||||.||+|+++|+++..+... ....+....+|+++...|++|.+++ ..++.++.
T Consensus 161 ~-~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~--~~~~~~~~~~d~~l~~~pl~h~~g~-~~~~~~l~ 236 (563)
T PLN02860 161 G-TTELDYAWAPDDAVLICFTSGTTGRPKGVTISHSALIVQSLA--KIAIVGYGEDDVYLHTAPLCHIGGL-SSALAMLM 236 (563)
T ss_pred c-cccccCCCCCCCeEEEEecCCCCCCCceEEeehHHHHHHHHH--HHhhcCCCCCCEEEEecCchhhccH-HHHHHHHH
Confidence 0 011112345689999999999999999999999999876443 3334556788999999999999998 67889999
Q ss_pred cCCeEEEccCCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCC--ccCCCCceEEEeecccCCHHHHHHHHHhCCCCc
Q 019348 260 KGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVR--KFDISSLKLVGSGAAPLGKELMEDCQKNIPGAT 337 (342)
Q Consensus 260 ~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~--~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~ 337 (342)
.|+++++.+++++..+++.++++++|++.++|+++..|++..... ...+++||.+++||+++++++.++|++.|++++
T Consensus 237 ~G~~~v~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~ 316 (563)
T PLN02860 237 VGACHVLLPKFDAKAALQAIKQHNVTSMITVPAMMADLISLTRKSMTWKVFPSVRKILNGGGSLSSRLLPDAKKLFPNAK 316 (563)
T ss_pred cCceEEecCCCCHHHHHHHHHHhCCeeEEeChHHHHHHHHhhhhhhccccccceeEEEeCCCcCCHHHHHHHHHhcCCCc
Confidence 999999999999999999999999999999999999998765322 246789999999999999999999999998799
Q ss_pred ccccC
Q 019348 338 IFQKI 342 (342)
Q Consensus 338 l~~~Y 342 (342)
+++.|
T Consensus 317 ~~~~Y 321 (563)
T PLN02860 317 LFSAY 321 (563)
T ss_pred eecCC
Confidence 99988
No 10
>PLN02330 4-coumarate--CoA ligase-like 1
Probab=100.00 E-value=2e-41 Score=317.20 Aligned_cols=322 Identities=32% Similarity=0.535 Sum_probs=261.5
Q ss_pred CceeecCCCCCCCCCCCCCCHHHHHhhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCC
Q 019348 9 DGIYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPN 88 (342)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n 88 (342)
+.++.+..++.+.+.. .|+.+++.+.++.+|+++|+.+...++.+||+||.+++.++|+.|.+.|+++||+|+++++|
T Consensus 12 ~~~~~~~~~~~~~~~~--~~~~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~~ 89 (546)
T PLN02330 12 EHIFRSRYPSVPVPDK--LTLPDFVLQDAELYADKVAFVEAVTGKAVTYGEVVRDTRRFAKALRSLGLRKGQVVVVVLPN 89 (546)
T ss_pred ceeeccCCCCCCCCCC--CcHHHHHhhhhhcCCCccEEEecCCCCcccHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCC
Confidence 3455556665544444 79999999999999999999976556899999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHhCCeEeccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhccCCCeEEecCCCcccccccccccccc
Q 019348 89 SIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKI 168 (342)
Q Consensus 89 ~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (342)
+++++++++||+++|++++|+++..+.+++.++++.++++++++++.....+.......+.++... ....
T Consensus 90 ~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~----------~~~~ 159 (546)
T PLN02330 90 VAEYGIVALGIMAAGGVFSGANPTALESEIKKQAEAAGAKLIVTNDTNYGKVKGLGLPVIVLGEEK----------IEGA 159 (546)
T ss_pred chHHHHHHHHHHHhCcEeccCCccCCHHHHHHHHHhcCCeEEEEccchhhhHhhcCCcEEEecCCC----------CCCc
Confidence 999999999999999999999999999999999999999999999988877766655555444221 1122
Q ss_pred ccHHHHHhccCCCC-CCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHH
Q 019348 169 VSFHDLIELSGSVT-DIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHV 247 (342)
Q Consensus 169 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~ 247 (342)
..|.+++....... ........++++++++|||||||.||||.++|.++...+..............++.+...|++|.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~ 239 (546)
T PLN02330 160 VNWKELLEAADRAGDTSDNEEILQTDLCALPFSSGTTGISKGVMLTHRNLVANLCSSLFSVGPEMIGQVVTLGLIPFFHI 239 (546)
T ss_pred ccHHHHHhhccccCcccccccCCcccEEEEEeCCCCcCCCcEEEEehHHHHHHHHHHhhccCccccCceEEEEecChHHH
Confidence 34555554322101 11123345678999999999999999999999999876432111111112245789999999999
Q ss_pred HHHHHHHHHHhhcCCeEEEccCCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCC--CceEEEeecccCCHHH
Q 019348 248 FGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDIS--SLKLVGSGAAPLGKEL 325 (342)
Q Consensus 248 ~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~--~lr~~~~gG~~l~~~~ 325 (342)
+++...++.++..|+++++.+.+++..+++.++++++|.+.++|.++..++........++. ++|.+++||+++++++
T Consensus 240 ~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~l~~i~~~g~~l~~~~ 319 (546)
T PLN02330 240 YGITGICCATLRNKGKVVVMSRFELRTFLNALITQEVSFAPIVPPIILNLVKNPIVEEFDLSKLKLQAIMTAAAPLAPEL 319 (546)
T ss_pred HHHHHHHHHHhhcCCEEEEecccCHHHHHHHHHHcCCeeeecCCHHHHHHHhCccccccccchheeeeEEEcCCcCCHHH
Confidence 99867788999999999999999999999999999999999999999999987655444554 4789999999999999
Q ss_pred HHHHHHhCCCCcccccC
Q 019348 326 MEDCQKNIPGATIFQKI 342 (342)
Q Consensus 326 ~~~~~~~~~~~~l~~~Y 342 (342)
.+++++.|+++++++.|
T Consensus 320 ~~~~~~~~~~~~~~~~Y 336 (546)
T PLN02330 320 LTAFEAKFPGVQVQEAY 336 (546)
T ss_pred HHHHHHHcCCCeEEecc
Confidence 99999999779999988
No 11
>KOG1179 consensus Very long-chain acyl-CoA synthetase/fatty acid transporter [Lipid transport and metabolism]
Probab=100.00 E-value=6e-42 Score=296.88 Aligned_cols=306 Identities=19% Similarity=0.213 Sum_probs=260.4
Q ss_pred CCHHHHHhhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeE
Q 019348 27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA 106 (342)
Q Consensus 27 ~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~ 106 (342)
.++.+.|..+++++|+|+|+++.++++++||+|+.+++.++|+.|...|++.||.|++.++|.++|+..+|+++++|++.
T Consensus 77 ~ti~~~F~~~vrr~p~k~aii~~~~~~~~Tf~e~~~~s~~~A~~~~~~~l~~GD~VAL~men~pefv~lWlGLaKlGv~t 156 (649)
T KOG1179|consen 77 RTIAELFLSQVRRQPDKPAIIYEGPFQSLTFAELDARSNRVANYLHAEGLKAGDVVALLMENRPEFVALWLGLAKLGVIT 156 (649)
T ss_pred CcHHHHHHHHHHhCCCccEEEEeCCCceeeHHHHHHHHHHHHHHHHHhhcccCCEEEEecCCChhHHHHHHhHHhhCcee
Confidence 79999999999999999999999777999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhccCC----CeEEecCCCccccccccccccccccHHHHHhccCCCC
Q 019348 107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNL----PAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVT 182 (342)
Q Consensus 107 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (342)
..||++...+.|.|.++.++++++|++++..+.+.++.. ..+.....+ ......+..++.+.++...+..
T Consensus 157 A~iNtNlR~~~LlHsi~~s~aralv~~~el~~~~~e~~~~l~~~~i~~~~~~------~~~~~~g~~~L~~~l~~~~~~~ 230 (649)
T KOG1179|consen 157 AFINTNLRGEPLLHSITVSGARALVVGPELLNALEEILPLLIKNGIHVFSLG------PTSVPDGIESLLAKLSAAPKHP 230 (649)
T ss_pred eeeccccccchhhhhhhhcCceEEEECHHHHHHHHhcchhhhhccceEEecC------CCCCCchHHHHHHhhcccccCC
Confidence 999999999999999999999999999998877766521 111111110 0022233334444444333211
Q ss_pred -C-CCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHHHHHHHHhhc
Q 019348 183 -D-IPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQK 260 (342)
Q Consensus 183 -~-~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~ 260 (342)
. .......-.++++.+|||||||.||+.+++|......+.. ....++++.+|+++..+|++|..|.+..+-.++..
T Consensus 231 vp~~~~~~~~~~s~~lyIYTSGTTGLPKaAvith~r~~~~a~g--~~~~~g~~~~DvvY~~lPLYHsaa~ilGi~~~l~~ 308 (649)
T KOG1179|consen 231 VPVSTRSGLTFRSPLLYIYTSGTTGLPKAAVITHLRYLQGAAG--FYYVFGMTADDVVYTTLPLYHSAAGILGIGGCLLH 308 (649)
T ss_pred CCcccCCCccccceeEEEEcCCCCCCCHHHHHHHHHHHHHHHH--HHHHhCCCccceEEEcchhHHHHHHHHHHHHHHhc
Confidence 1 1223445568999999999999999999999999887554 45566678999999999999999999999999999
Q ss_pred CCeEEEccCCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCCHHHHHHHHHhCCCCcccc
Q 019348 261 GNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQ 340 (342)
Q Consensus 261 G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~ 340 (342)
|+|+|+-.+|++..+|+...+|++|++...-.+++.|++.+......-.++|..+-.| +.++++++|.++|+..+|.+
T Consensus 309 GaT~VlrkKFSAS~FW~DC~k~~~Tv~QYIGElcRYLl~~p~~~~er~HkVRla~GNG--LR~diW~~Fv~RFg~~~IgE 386 (649)
T KOG1179|consen 309 GATVVLRKKFSASNFWDDCRKYNVTVIQYIGELCRYLLNQPPSPEERQHKVRLAYGNG--LRPDIWQQFVKRFGIIKIGE 386 (649)
T ss_pred CceEEEecccchhhhHHHHHHhCCeeeehHHHHHHHHHcCCCChhhcCceEEEEecCC--CCchHHHHHHHHcCCCeEEE
Confidence 9999999999999999999999999999999999999999988887888999988777 99999999999999777887
Q ss_pred cC
Q 019348 341 KI 342 (342)
Q Consensus 341 ~Y 342 (342)
.|
T Consensus 387 ~Y 388 (649)
T KOG1179|consen 387 FY 388 (649)
T ss_pred Ee
Confidence 76
No 12
>PLN02614 long-chain acyl-CoA synthetase
Probab=100.00 E-value=5.1e-42 Score=326.24 Aligned_cols=312 Identities=18% Similarity=0.248 Sum_probs=236.6
Q ss_pred CCHHHHHhhhcccCCCceEEEeC----C-CC--cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHH
Q 019348 27 FSMVHFLFRNSASYSSKLALIDA----D-SD--ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGV 99 (342)
Q Consensus 27 ~~l~~~l~~~~~~~p~~~a~~~~----~-~~--~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~ 99 (342)
.|+.++|.+.++++||++|+... + .+ .++||+||.++++++|+.|++.|+++||+|+|+++|+++|+++++||
T Consensus 45 ~t~~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~Gv~~Gd~Vai~~~n~~e~~~~~lA~ 124 (666)
T PLN02614 45 DSCWDVFRMSVEKYPNNPMLGRREIVDGKPGKYVWQTYQEVYDIVIKLGNSLRSVGVKDEAKCGIYGANSPEWIISMEAC 124 (666)
T ss_pred CcHHHHHHHHHHhCCCCCeEEEecccCCCCCCcEEeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHH
Confidence 59999999999999999999842 1 11 35899999999999999999999999999999999999999999999
Q ss_pred HHhCCeEeccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhcc-C-----CC-eEEecCCCccccccccccccccccHH
Q 019348 100 IAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDL-N-----LP-AVLLGSKDKVSSSGLISRSSKIVSFH 172 (342)
Q Consensus 100 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~-~-----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (342)
+++|+++||+++.++.+++.+++++++++++|++++....+... . .. .+.++...................++
T Consensus 125 ~~~Gav~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~~~~~~~~ 204 (666)
T PLN02614 125 NAHGLYCVPLYDTLGAGAVEFIISHSEVSIVFVEEKKISELFKTCPNSTEYMKTVVSFGGVSREQKEEAETFGLVIYAWD 204 (666)
T ss_pred HHcCCEEEEecCCCCHHHHHHHHhccCCCEEEECHHHHHHHHHhcccccccceEEEEeCCCChHHhhhhhhcCcEEEEHH
Confidence 99999999999999999999999999999999987654433211 1 11 22222110000000000011234566
Q ss_pred HHHhccCCCCCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhh---ccccCCCeEEEEccchhHHHH
Q 019348 173 DLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQ---ELVGELDHVVLCVLPMFHVFG 249 (342)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~---~~~~~~~d~~~~~~p~~~~~g 249 (342)
++...... .........++++++|+|||||||.||||++||+++...+....... ...+..+|++++++|++|.++
T Consensus 205 ~~~~~~~~-~~~~~~~~~~~d~a~I~yTSGTTG~PKGV~lth~nl~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H~~~ 283 (666)
T PLN02614 205 EFLKLGEG-KQYDLPIKKKSDICTIMYTSGTTGDPKGVMISNESIVTLIAGVIRLLKSANAALTVKDVYLSYLPLAHIFD 283 (666)
T ss_pred HHHhhccc-CCCCCCCCCCCceEEEEEcCCCCCCCcEEEEecHHHHHHHHHHHhhccccccCCCCCcEEEEeccHHHHHH
Confidence 66543321 11112234678999999999999999999999999988754422111 123567899999999999999
Q ss_pred HHHHHHHHhhcCCeEEEccCCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCC--------------------------
Q 019348 250 LSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLV-------------------------- 303 (342)
Q Consensus 250 ~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~-------------------------- 303 (342)
+ ...+..+..|+++++.+ +++..+++.++++++|+++++|++++.+.+....
T Consensus 284 ~-~~~~~~l~~G~~v~~~~-~~~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 361 (666)
T PLN02614 284 R-VIEECFIQHGAAIGFWR-GDVKLLIEDLGELKPTIFCAVPRVLDRVYSGLQKKLSDGGFLKKFVFDSAFSYKFGNMKK 361 (666)
T ss_pred H-HHHHHHHHhCCEEEEeC-CCHHHHHHHHHHhCCeEEEecHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHc
Confidence 8 45667788999999875 5899999999999999999999999988642100
Q ss_pred -----Ccc-------------CC-CCceEEEeecccCCHHHHHHHHHhCCCCcccccC
Q 019348 304 -----RKF-------------DI-SSLKLVGSGAAPLGKELMEDCQKNIPGATIFQKI 342 (342)
Q Consensus 304 -----~~~-------------~l-~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~Y 342 (342)
... .+ ++||.+++||+++++.+ ++|.+.+++++++++|
T Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~lg~~lr~~~~Gga~l~~~~-~~~~~~~~~~~i~~~Y 418 (666)
T PLN02614 362 GQSHVEASPLCDKLVFNKVKQGLGGNVRIILSGAAPLASHV-ESFLRVVACCHVLQGY 418 (666)
T ss_pred CCCCcccchHHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHH-HHHHHHhcCCCEEeeC
Confidence 000 11 68999999999999864 6777888768999988
No 13
>PLN02736 long-chain acyl-CoA synthetase
Probab=100.00 E-value=7.1e-42 Score=325.75 Aligned_cols=310 Identities=18% Similarity=0.204 Sum_probs=244.1
Q ss_pred CCHHHHHhhhcccCCCceEEEe---CCC----CcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHH
Q 019348 27 FSMVHFLFRNSASYSSKLALID---ADS----DESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGV 99 (342)
Q Consensus 27 ~~l~~~l~~~~~~~p~~~a~~~---~~~----~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~ 99 (342)
.++.++|.+.++++||++|+.. .+. .+.+||+||.++++++|+.|++.|+++||+|+|+++|+++|+++++||
T Consensus 44 ~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~lTy~el~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~ 123 (651)
T PLN02736 44 GTLHDNFVYAVETFRDYKYLGTRIRVDGTVGEYKWMTYGEAGTARTAIGSGLVQHGIPKGACVGLYFINRPEWLIVDHAC 123 (651)
T ss_pred CCHHHHHHHHHHhCCCCCeEEEEecCCCCCCCcEEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHH
Confidence 6899999999999999999942 221 256999999999999999999999999999999999999999999999
Q ss_pred HHhCCeEeccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhccC-----CCeEEecCCCcccccc-ccccccccccHHH
Q 019348 100 IAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN-----LPAVLLGSKDKVSSSG-LISRSSKIVSFHD 173 (342)
Q Consensus 100 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 173 (342)
+++|++++|+++..+.+++.+++++++++++|++.+....+.... .+.++........... ..........|++
T Consensus 124 ~~~G~v~vpl~~~~~~~~l~~il~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (651)
T PLN02736 124 SAYSYVSVPLYDTLGPDAVKFIVNHAEVAAIFCVPQTLNTLLSCLSEIPSVRLIVVVGGADEPLPSLPSGTGVEIVTYSK 203 (651)
T ss_pred HHcCCeEEEeecCCCHHHHHHHHhccCCCEEEECHHHHHHHHHHhhcCCCceEEEEECCCchhhhhhhccCCcEEEEHHH
Confidence 999999999999999999999999999999999977665543321 1222222110000000 0001122456777
Q ss_pred HHhccCCCCCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHHHH
Q 019348 174 LIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVI 253 (342)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~ 253 (342)
+...... .........++++++|+|||||||.||||++||+++...+.. ....+...++|++++.+|++|.+++ ..
T Consensus 204 ~~~~~~~-~~~~~~~~~~dd~a~IlyTSGTTG~PKGV~lsh~~l~~~~~~--~~~~~~~~~~d~~l~~lPl~h~~~~-~~ 279 (651)
T PLN02736 204 LLAQGRS-SPQPFRPPKPEDVATICYTSGTTGTPKGVVLTHGNLIANVAG--SSLSTKFYPSDVHISYLPLAHIYER-VN 279 (651)
T ss_pred HHHhccc-CCCCCCCCCccceEEEEEcCCCCCCCcEEEEecHHHHHHHHH--HHhccCCCCCCEEEEeCCHHHHHHH-HH
Confidence 6654321 111223456789999999999999999999999999987555 3344556788999999999999999 57
Q ss_pred HHHHhhcCCeEEEccCCCHHHHHHHHHhccceEEEecHHHHHHHHcCCC----------------------------CC-
Q 019348 254 LYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSL----------------------------VR- 304 (342)
Q Consensus 254 ~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~----------------------------~~- 304 (342)
++.++..|+++++.+. ++..+++.++++++|+++++|.+++.+.+... ..
T Consensus 280 ~~~~l~~G~~i~~~~~-~~~~~~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (651)
T PLN02736 280 QIVMLHYGVAVGFYQG-DNLKLMDDLAALRPTIFCSVPRLYNRIYDGITNAVKESGGLKERLFNAAYNAKKQALENGKNP 358 (651)
T ss_pred HHHHHHcCCEEEEeCC-CHHHHHHHHHHhCCcEEecchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 8889999999998865 78999999999999999999999988765310 00
Q ss_pred c------------cCC-CCceEEEeecccCCHHHHHHHHHhCCCCcccccC
Q 019348 305 K------------FDI-SSLKLVGSGAAPLGKELMEDCQKNIPGATIFQKI 342 (342)
Q Consensus 305 ~------------~~l-~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~Y 342 (342)
. ..+ +++|.+++||+++++++.+++++.++ ++++++|
T Consensus 359 ~~~~~~~~~~~~~~~lg~~lr~~~~gGa~l~~~~~~~~~~~~g-~~~~~~Y 408 (651)
T PLN02736 359 SPMWDRLVFNKIKAKLGGRVRFMSSGASPLSPDVMEFLRICFG-GRVLEGY 408 (651)
T ss_pred CchHHHHHHHHHHHHhcCcEEEEEeCCCCCCHHHHHHHHHHhC-CCeEEEe
Confidence 0 011 48999999999999999999999987 8899988
No 14
>PLN02861 long-chain-fatty-acid-CoA ligase
Probab=100.00 E-value=1.2e-41 Score=323.85 Aligned_cols=311 Identities=18% Similarity=0.230 Sum_probs=235.6
Q ss_pred CCHHHHHhhhcccCCCceEEEeC---C----CCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHH
Q 019348 27 FSMVHFLFRNSASYSSKLALIDA---D----SDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGV 99 (342)
Q Consensus 27 ~~l~~~l~~~~~~~p~~~a~~~~---~----~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~ 99 (342)
.|+.++|.+.++++|+++|+... + ..+++||+|+.++++++|.+|.+.|+++||+|+|+++|+++|+++++||
T Consensus 43 ~t~~~~l~~~~~~~p~~~al~~~~~~~~~~g~~~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~ 122 (660)
T PLN02861 43 DSPWQFFSDAVKKYPNNQMLGRRQVTDSKVGPYVWLTYKEVYDAAIRIGSAIRSRGVNPGDRCGIYGSNCPEWIIAMEAC 122 (660)
T ss_pred CCHHHHHHHHHHhCCCCCeEEEEecCCCCCCCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHH
Confidence 58999999999999999999642 1 1257999999999999999999999999999999999999999999999
Q ss_pred HHhCCeEeccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhcc------CCCeEEecCCCccc-cccccccccccccHH
Q 019348 100 IAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDL------NLPAVLLGSKDKVS-SSGLISRSSKIVSFH 172 (342)
Q Consensus 100 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 172 (342)
+++|++++|+++..+.+++.+++++++++++|++++....+... ..+.++........ ............+|.
T Consensus 123 ~~~G~v~vpl~~~~~~~~l~~il~~s~~~~v~~~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~ 202 (660)
T PLN02861 123 NSQGITYVPLYDTLGANAVEFIINHAEVSIAFVQESKISSILSCLPKCSSNLKTIVSFGDVSSEQKEEAEELGVSCFSWE 202 (660)
T ss_pred HHcCCeEEEecCCCCHHHHHHHHHcCCCCEEEECHHHHHHHHHhhhhCCCCCEEEEEECCCChhhhhhhhcCCcEEEEHH
Confidence 99999999999999999999999999999999987655443221 12222221110000 000000011234566
Q ss_pred HHHhccCCCCCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhc---cccCCCeEEEEccchhHHHH
Q 019348 173 DLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQE---LVGELDHVVLCVLPMFHVFG 249 (342)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~---~~~~~~d~~~~~~p~~~~~g 249 (342)
++..... .........++++++|+|||||||.||||++||++++..+........ .....+|++++++|++|.++
T Consensus 203 ~~~~~~~--~~~~~~~~~~dd~a~i~yTSGTTG~PKGV~lth~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H~~~ 280 (660)
T PLN02861 203 EFSLMGS--LDCELPPKQKTDICTIMYTSGTTGEPKGVILTNRAIIAEVLSTDHLLKVTDRVATEEDSYFSYLPLAHVYD 280 (660)
T ss_pred HHHHhCc--ccCCCCccCCCceEEEEecCCCCCCCCEEEEecHHHHHHHHHHHhccccccccCCCCCEEEEECcHHHHHH
Confidence 6654332 111222346789999999999999999999999999987544221111 11357899999999999999
Q ss_pred HHHHHHHHhhcCCeEEEccCCCHHHHHHHHHhccceEEEecHHHHHHHHcC-----------------------------
Q 019348 250 LSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKN----------------------------- 300 (342)
Q Consensus 250 ~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~----------------------------- 300 (342)
+. ..+.++..|+++++.+ +++..+++.|+++++|+++++|.+++.+.+.
T Consensus 281 ~~-~~~~~l~~G~~v~~~~-~~~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~~~ 358 (660)
T PLN02861 281 QV-IETYCISKGASIGFWQ-GDIRYLMEDVQALKPTIFCGVPRVYDRIYTGIMQKISSGGMLRKKLFDFAYNYKLGNLRK 358 (660)
T ss_pred HH-HHHHHHHhCCEEEEeC-CCHHHHHHHHHHhCCcEEeechHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhc
Confidence 84 4556899999999874 6899999999999999999999999988641
Q ss_pred --------CCCCcc-------CC-CCceEEEeecccCCHHHHHHHHHhCCCCcccccC
Q 019348 301 --------SLVRKF-------DI-SSLKLVGSGAAPLGKELMEDCQKNIPGATIFQKI 342 (342)
Q Consensus 301 --------~~~~~~-------~l-~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~Y 342 (342)
+..... .+ .++|.+++||+++++++. +|.+.++...++++|
T Consensus 359 ~~~~~~~~~~~~~~~~~~~r~~lg~~lr~~~~Ggapl~~~~~-~~~~~~~~~~l~~~Y 415 (660)
T PLN02861 359 GLKQEEASPRLDRLVFDKIKEGLGGRVRLLLSGAAPLPRHVE-EFLRVTSCSVLSQGY 415 (660)
T ss_pred CCCCcCccHhHHHHHHHHHHHHhCCcEEEEEECCCCCCHHHH-HHHHHHcCCCeeEec
Confidence 000000 11 589999999999999974 577777745788888
No 15
>PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated
Probab=100.00 E-value=3.3e-41 Score=314.57 Aligned_cols=298 Identities=19% Similarity=0.240 Sum_probs=242.6
Q ss_pred CCHHHHHhhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeE
Q 019348 27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA 106 (342)
Q Consensus 27 ~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~ 106 (342)
.++.+.|.+.++++|++.|+.+.+ .+++||+||.++++++|+.|.+ .+||+|+++++|+++++++++||+++|+++
T Consensus 19 ~~~~~~~~~~~~~~p~~~a~~~~~-~~~~Ty~el~~~~~~lA~~L~~---~~gd~Val~~~n~~e~~~~~lA~~~~G~v~ 94 (539)
T PRK06334 19 KTVLESFLKLCSEMTTATVCWDEQ-LGKLSYNQVRKAVIALATKVSK---YPDQHIGIMMPASAGAYIAYFATLLSGKIP 94 (539)
T ss_pred CcHHHHHHHHHHhCCCceEEEeCC-CCcccHHHHHHHHHHHHHHHhh---ccCCeEEEEcCCchHHHHHHHHHHhcCCee
Confidence 689999999999999999998763 3789999999999999999987 389999999999999999999999999999
Q ss_pred eccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhccC-------CCeEEecCCCccccccccccccccccHHHHHhcc-
Q 019348 107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN-------LPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELS- 178 (342)
Q Consensus 107 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 178 (342)
+|+++..+.+++.++++.+++++++++.+....+.+.. ...+.++... ....+.+.....
T Consensus 95 vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~------------~~~~~~~~~~~~~ 162 (539)
T PRK06334 95 VMINWSQGLREVTACANLVGVTHVLTSKQLMQHLAQTHGEDAEYPFSLIYMEEVR------------KELSFWEKCRIGI 162 (539)
T ss_pred EecCcccchHHHHHHHHHcCCCEEEehHHHHHHHhhhhhccccccccEEEEehhh------------hhccHHHhhhhhh
Confidence 99999999999999999999999999977665544321 1122221100 000001100000
Q ss_pred ---CCC----CCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHH
Q 019348 179 ---GSV----TDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLS 251 (342)
Q Consensus 179 ---~~~----~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~ 251 (342)
... .........++++++|+|||||||.||||++||+++...... ....+....+|++++.+|++|.+|+.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~--~~~~~~~~~~d~~l~~~p~~h~~g~~ 240 (539)
T PRK06334 163 YMSIPFEWLMRWFGVSDKDPEDVAVILFTSGTEKLPKGVPLTHANLLANQRA--CLKFFSPKEDDVMMSFLPPFHAYGFN 240 (539)
T ss_pred hhcCCchhhhhcccCCCCCcCCEEEEEECCCCCCCCCEEEEcHHHHHHHHHH--HHHhcCCCCCceEEEecchHhhhhhH
Confidence 000 000112346789999999999999999999999999887444 33445567889999999999999986
Q ss_pred HHHHHHhhcCCeEEEcc-CCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCCHHHHHHHH
Q 019348 252 VILYDQLQKGNCVVSMG-KFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQ 330 (342)
Q Consensus 252 ~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~ 330 (342)
..++.++..|+++++.. .+++..+++.|+++++|++.++|++++.|++.......++++||.+++||+++++++.++++
T Consensus 241 ~~~~~~l~~G~~vv~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~ 320 (539)
T PRK06334 241 SCTLFPLLSGVPVVFAYNPLYPKKIVEMIDEAKVTFLGSTPVFFDYILKTAKKQESCLPSLRFVVIGGDAFKDSLYQEAL 320 (539)
T ss_pred HHHHHHHHcCCeEEEecCCCCHHHHHHHHHHhCCcEEEecHHHHHHHHHhhhhcccccccccEEEECCccCCHHHHHHHH
Confidence 67889999999999875 57999999999999999999999999999987655566789999999999999999999999
Q ss_pred HhCCCCcccccC
Q 019348 331 KNIPGATIFQKI 342 (342)
Q Consensus 331 ~~~~~~~l~~~Y 342 (342)
+.++++.+++.|
T Consensus 321 ~~~~~~~i~~~Y 332 (539)
T PRK06334 321 KTFPHIQLRQGY 332 (539)
T ss_pred HHCCCCeEEecc
Confidence 999878999888
No 16
>PRK08314 long-chain-fatty-acid--CoA ligase; Validated
Probab=100.00 E-value=6.4e-41 Score=314.02 Aligned_cols=308 Identities=27% Similarity=0.403 Sum_probs=255.3
Q ss_pred CCHHHHHhhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEECCCCChHHHHHHHHHHhCCe
Q 019348 27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHL-GITKKDVVLIFAPNSIHFPICFLGVIAIGAI 105 (342)
Q Consensus 27 ~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~-g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~ 105 (342)
.++.++|.+.++++|+++|+++. ++++||+||.+++.++|..|.+. |+++||+|+++++|+++++++++||+++|++
T Consensus 10 ~tl~~~l~~~a~~~~~~~a~~~~--~~~~Ty~~l~~~v~~~a~~L~~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~ 87 (546)
T PRK08314 10 TSLFHNLEVSARRYPDKTAIVFY--GRAISYRELLEEAERLAGYLQQECGVRKGDRVLLYMQNSPQFVIAYYAILRANAV 87 (546)
T ss_pred CCHHHHHHHHHHHcCCCcceeec--CceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCChHHHHHHHHHHHcCcE
Confidence 58999999999999999999987 77999999999999999999998 9999999999999999999999999999999
Q ss_pred EeccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhcc----CCCeEEecCCCccccc----c-----------cccccc
Q 019348 106 ASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDL----NLPAVLLGSKDKVSSS----G-----------LISRSS 166 (342)
Q Consensus 106 ~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~----~~~~~~~~~~~~~~~~----~-----------~~~~~~ 166 (342)
++|++|..+.+++.++++.+++++++++++....+... ....+.+......... . ......
T Consensus 88 ~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (546)
T PRK08314 88 VVPVNPMNREEELAHYVTDSGARVAIVGSELAPKVAPAVGNLRLRHVIVAQYSDYLPAEPEIAVPAWLRAEPPLQALAPG 167 (546)
T ss_pred EeecCcCcCHHHHHHHHHhCCCeEEEEccchhhhHHHHhhccCcceEEEecchhhcccccccCccccccccccccccccc
Confidence 99999999999999999999999999998776654432 1222222110000000 0 000112
Q ss_pred ccccHHHHHhccCCCCCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhH
Q 019348 167 KIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFH 246 (342)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~ 246 (342)
++..|++...... ........++++++|+|||||||.||+|.++|.+++.++.. .........+|++++..|++|
T Consensus 168 ~~~~~~~~~~~~~---~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~--~~~~~~~~~~d~~l~~~p~~~ 242 (546)
T PRK08314 168 GVVAWKEALAAGL---APPPHTAGPDDLAVLPYTSGTTGVPKGCMHTHRTVMANAVG--SVLWSNSTPESVVLAVLPLFH 242 (546)
T ss_pred ccccHHHHhcccC---CCCCCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHH--HHHhhCCCCCceEEEEcCchH
Confidence 3445555554321 11223456789999999999999999999999999987554 344455678999999999999
Q ss_pred HHHHHHHHHHHhhcCCeEEEccCCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCCHHHH
Q 019348 247 VFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELM 326 (342)
Q Consensus 247 ~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~ 326 (342)
.+|+...++.++..|+++++.+.+++..+++.++++++|++.++|.++..++........+++++|.+++||+++++++.
T Consensus 243 ~~g~~~~~~~~l~~G~~i~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~ll~~~~~~~~~~~~l~~~~~gG~~~~~~~~ 322 (546)
T PRK08314 243 VTGMVHSMNAPIYAGATVVLMPRWDREAAARLIERYRVTHWTNIPTMVVDFLASPGLAERDLSSLRYIGGGGAAMPEAVA 322 (546)
T ss_pred HHHHHHHHHHHHHcCCeEEecCCCCHHHHHHHHHHhcCceecccHHHHHHHHhCCCccccCchhhheeeeccccCCHHHH
Confidence 99997888999999999999999999999999999999999999999999988766566678899999999999999999
Q ss_pred HHHHHhCCCCcccccC
Q 019348 327 EDCQKNIPGATIFQKI 342 (342)
Q Consensus 327 ~~~~~~~~~~~l~~~Y 342 (342)
+++.+.|+ +++++.|
T Consensus 323 ~~~~~~~~-~~~~~~Y 337 (546)
T PRK08314 323 ERLKELTG-LDYVEGY 337 (546)
T ss_pred HHHHHHcC-CcEEecc
Confidence 99999997 8999887
No 17
>PLN02654 acetate-CoA ligase
Probab=100.00 E-value=5e-41 Score=319.93 Aligned_cols=313 Identities=22% Similarity=0.330 Sum_probs=238.0
Q ss_pred CCH-HHHHhhhcc-cCCCceEEEeCC----CCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHH
Q 019348 27 FSM-VHFLFRNSA-SYSSKLALIDAD----SDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVI 100 (342)
Q Consensus 27 ~~l-~~~l~~~~~-~~p~~~a~~~~~----~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~ 100 (342)
.|+ ..++.++++ .+|+++|+++.. ..+++||+||.+++.++|+.|++.|+++||+|+++++|++++++++|||+
T Consensus 87 ~N~~~~~l~~~~~~~~~~~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrV~i~~pn~~e~v~a~lA~~ 166 (666)
T PLN02654 87 TNICYNCLDRNVEAGNGDKIAIYWEGNEPGFDASLTYSELLDRVCQLANYLKDVGVKKGDAVVIYLPMLMELPIAMLACA 166 (666)
T ss_pred eeHHHHHHHHhhccCCCCCEEEEEEcCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHH
Confidence 455 456666665 489999998632 23789999999999999999999999999999999999999999999999
Q ss_pred HhCCeEeccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhcc------------------CCCeEEe-cCCCccccccc
Q 019348 101 AIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDL------------------NLPAVLL-GSKDKVSSSGL 161 (342)
Q Consensus 101 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~------------------~~~~~~~-~~~~~~~~~~~ 161 (342)
++|++++|+++.++.+++.+++++++|+++|+++......+.. ....+.. ...........
T Consensus 167 ~~Gav~vpv~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (666)
T PLN02654 167 RIGAVHSVVFAGFSAESLAQRIVDCKPKVVITCNAVKRGPKTINLKDIVDAALDESAKNGVSVGICLTYENQLAMKREDT 246 (666)
T ss_pred HcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCccccCCcccchHHHHHHHHHhccccCCCccEEEEeccccccccccc
Confidence 9999999999999999999999999999999987643221110 0001111 10000000000
Q ss_pred cccccccccHHHHHhccCCCCCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEc
Q 019348 162 ISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCV 241 (342)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~ 241 (342)
.........|+++..... ..........+++++|+|||||||.||||+++|++++.... ......+.+.++|++++.
T Consensus 247 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~d~~~ilyTSGTTG~PKgVv~sh~~~~~~~~-~~~~~~~~~~~~d~~~~~ 323 (666)
T PLN02654 247 KWQEGRDVWWQDVVPNYP--TKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVYTA-TTFKYAFDYKPTDVYWCT 323 (666)
T ss_pred ccccCCcccHHHHhhcCC--CCCCceecCCCCceEEEecCCCCCCCceEEecccHHHHHHH-HHHHHhcCCCCCcEEEEc
Confidence 000001122444443211 11122235678999999999999999999999999764321 113344566788999999
Q ss_pred cchhHHHHHHHHHHHHhhcCCeEEEccC----CCHHHHHHHHHhccceEEEecHHHHHHHHcCCC--CCccCCCCceEEE
Q 019348 242 LPMFHVFGLSVILYDQLQKGNCVVSMGK----FDIEMALRAIEKYRVTVWWVVPPIILALAKNSL--VRKFDISSLKLVG 315 (342)
Q Consensus 242 ~p~~~~~g~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~--~~~~~l~~lr~~~ 315 (342)
.|++|+.|....++.+|..|+++++.++ .++..+++.++++++|+++++|++++.|.+... ....++++||.++
T Consensus 324 ~~~~~~~g~~~~~~~~L~~G~tvvl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~~Lr~i~ 403 (666)
T PLN02654 324 ADCGWITGHSYVTYGPMLNGATVLVFEGAPNYPDSGRCWDIVDKYKVTIFYTAPTLVRSLMRDGDEYVTRHSRKSLRVLG 403 (666)
T ss_pred CCchhhhhhHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhhCccccccCChhheeEEE
Confidence 9999999986778999999999999863 479999999999999999999999999988653 2345789999999
Q ss_pred eecccCCHHHHHHHHHhCCC--CcccccC
Q 019348 316 SGAAPLGKELMEDCQKNIPG--ATIFQKI 342 (342)
Q Consensus 316 ~gG~~l~~~~~~~~~~~~~~--~~l~~~Y 342 (342)
++|+++++++.+++.+.+|+ +++.+.|
T Consensus 404 ~~Ge~l~~~~~~~~~~~~g~~~~~i~~~y 432 (666)
T PLN02654 404 SVGEPINPSAWRWFFNVVGDSRCPISDTW 432 (666)
T ss_pred EecCCCCHHHHHHHHHHhCCCCCceeccc
Confidence 99999999999999999974 5677766
No 18
>PRK07529 AMP-binding domain protein; Validated
Probab=100.00 E-value=1.1e-40 Score=316.27 Aligned_cols=312 Identities=25% Similarity=0.312 Sum_probs=246.0
Q ss_pred CCCHHHHHhhhcccCCCceEEEeC------CCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHH
Q 019348 26 SFSMVHFLFRNSASYSSKLALIDA------DSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGV 99 (342)
Q Consensus 26 ~~~l~~~l~~~~~~~p~~~a~~~~------~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~ 99 (342)
+.|+.++|.+.++++|+++|+++. +..+++||+||.+++.++|+.|++.|+++||+|+++++|++++++++|||
T Consensus 24 ~~t~~~~l~~~a~~~p~~~Al~~~~~~~~~~~~~~~Ty~eL~~~v~~~A~~L~~~Gi~~gd~V~i~~~n~~e~~~~~lA~ 103 (632)
T PRK07529 24 PASTYELLSRAAARHPDAPALSFLLDADPLDRPETWTYAELLADVTRTANLLHSLGVGPGDVVAFLLPNLPETHFALWGG 103 (632)
T ss_pred CCCHHHHHHHHHHHCCCCceEEeecccCCCCCCceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHH
Confidence 468999999999999999999863 13579999999999999999999999999999999999999999999999
Q ss_pred HHhCCeEeccCCCCCHHHHHHHhhhcCceEEEEcccch-----hhhhc----c-CCC-eEEecCCCccccccc-------
Q 019348 100 IAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELW-----DKVKD----L-NLP-AVLLGSKDKVSSSGL------- 161 (342)
Q Consensus 100 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~----~-~~~-~~~~~~~~~~~~~~~------- 161 (342)
+++| +++|+++.++.+++.++++.++++++++++... ..... . ..+ .+.++..........
T Consensus 104 ~~~G-i~~pi~~~~~~~~i~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 182 (632)
T PRK07529 104 EAAG-IANPINPLLEPEQIAELLRAAGAKVLVTLGPFPGTDIWQKVAEVLAALPELRTVVEVDLARYLPGPKRLAVPLIR 182 (632)
T ss_pred HHhC-EEEeCCCcCCHHHHHHHHHhcCCcEEEEeCCCCCchHHHHHHHHHhcCCcceeEEEecCcccccccccccccccc
Confidence 9999 568999999999999999999999999986532 12111 1 111 222221110000000
Q ss_pred cccccccccHHHHHhccCCCCCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEc
Q 019348 162 ISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCV 241 (342)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~ 241 (342)
......+..|.+.+...............++++++++|||||||.||+|.+||+++...+.. ....+...++|++++.
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~--~~~~~~~~~~d~~l~~ 260 (632)
T PRK07529 183 RKAHARILDFDAELARQPGDRLFSGRPIGPDDVAAYFHTGGTTGMPKLAQHTHGNEVANAWL--GALLLGLGPGDTVFCG 260 (632)
T ss_pred cccccccCCHHHHHhcCCCccccccCCCCcCceEEEEECCCccCcCCEEEEcHHHHHHHHHH--HHHhcCCCCCCEEEEe
Confidence 00122344566655443311111223346789999999999999999999999999887543 3344555788999999
Q ss_pred cchhHHHHHHHHHHHHhhcCCeEEEccCC---C---HHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEE
Q 019348 242 LPMFHVFGLSVILYDQLQKGNCVVSMGKF---D---IEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVG 315 (342)
Q Consensus 242 ~p~~~~~g~~~~~~~~l~~G~~~v~~~~~---~---~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~ 315 (342)
.|++|.++....++.++..|++++++++. + ...+++.++++++|++.++|+++..|++.+. ...++++||.++
T Consensus 261 ~pl~h~~~~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~-~~~~~~slr~v~ 339 (632)
T PRK07529 261 LPLFHVNALLVTGLAPLARGAHVVLATPQGYRGPGVIANFWKIVERYRINFLSGVPTVYAALLQVPV-DGHDISSLRYAL 339 (632)
T ss_pred cCchhhhHHHHHHHHHHHCCCEEEecCccccCcchHHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcc-cCCCccceEEEE
Confidence 99999999877899999999999998642 2 3688999999999999999999999998763 335789999999
Q ss_pred eecccCCHHHHHHHHHhCCCCcccccC
Q 019348 316 SGAAPLGKELMEDCQKNIPGATIFQKI 342 (342)
Q Consensus 316 ~gG~~l~~~~~~~~~~~~~~~~l~~~Y 342 (342)
+||+++++++.++|++.++ +++++.|
T Consensus 340 ~gg~~l~~~l~~~~~~~~g-~~l~~~Y 365 (632)
T PRK07529 340 CGAAPLPVEVFRRFEAATG-VRIVEGY 365 (632)
T ss_pred EcCCCCCHHHHHHHHHHhC-CcEeeee
Confidence 9999999999999999997 9999988
No 19
>PRK07656 long-chain-fatty-acid--CoA ligase; Validated
Probab=100.00 E-value=1.4e-40 Score=309.56 Aligned_cols=304 Identities=26% Similarity=0.383 Sum_probs=255.9
Q ss_pred CCHHHHHhhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeE
Q 019348 27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA 106 (342)
Q Consensus 27 ~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~ 106 (342)
.++.+.|.+.++.+|+++|+++. ++++||+||.+.+.++|..|.+.|+++||+|+++++|+.+++++++||+++|+++
T Consensus 5 ~~i~~~l~~~~~~~~~~~a~~~~--~~~~Ty~~l~~~~~~~a~~L~~~gv~~g~~V~l~~~~~~~~~~~~la~~~~G~~~ 82 (513)
T PRK07656 5 MTLPELLARAARRFGDKEAYVFG--DQRLTYAELNARVRRAAAALAALGIGKGDRVAIWAPNSPHWVIAALGALKAGAVV 82 (513)
T ss_pred ccHHHHHHHHHHHCCCCeEEEeC--CCceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHhcCeEE
Confidence 68999999999999999999997 7899999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhcc-----CCCeEEecCCCccccccccccccccccHHHHHhccCCC
Q 019348 107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDL-----NLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSV 181 (342)
Q Consensus 107 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (342)
+|+++..+.+++.++++.++++++++++......... ....+++....... ........|.++.....
T Consensus 83 v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~-- 155 (513)
T PRK07656 83 VPLNTRYTADEAAYILARGDAKALFVLGLFLGVDYSATTRLPALEHVVICETEEDD-----PHTEKMKTFTDFLAAGD-- 155 (513)
T ss_pred EecCcccCHHHHHHHHhhcCceEEEEchhhHHHHHHHHhccCCccEEEEEcCcccc-----cCccccccHHHHHhcCC--
Confidence 9999999999999999999999999988765544322 11222222211100 00112245666654433
Q ss_pred CCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHHHHHHHHhhcC
Q 019348 182 TDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKG 261 (342)
Q Consensus 182 ~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G 261 (342)
..........+++++|+|||||||.||+|.++|.++...+.. ....+....+|++++..|++|.+++...++.++..|
T Consensus 156 ~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G 233 (513)
T PRK07656 156 PAERAPEVDPDDVADILFTSGTTGRPKGAMLTHRQLLSNAAD--WAEYLGLTEGDRYLAANPFFHVFGYKAGVNAPLMRG 233 (513)
T ss_pred CCCCcCCCCCCceEEEEeCCCCCCCCCEEEEecHHHHHHHHH--HHHhhCCCCCCeEEEccchHHHHHHHHHHHHHHHcC
Confidence 212233456789999999999999999999999999877544 344555678899999999999999877799999999
Q ss_pred CeEEEccCCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCCHHHHHHHHHhCCCC-cccc
Q 019348 262 NCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGA-TIFQ 340 (342)
Q Consensus 262 ~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~-~l~~ 340 (342)
+++++.+.+++..+++.++++++|++.++|.+++.+.+.......+++++|.+++||+++++++.++|++.++ . .+++
T Consensus 234 ~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~v~~~g~~~~~~~~~~~~~~~~-~~~~~~ 312 (513)
T PRK07656 234 ATILPLPVFDPDEVFRLIETERITVLPGPPTMYNSLLQHPDRSAEDLSSLRLAVTGAASMPVALLERFESELG-VDIVLT 312 (513)
T ss_pred ceEEecCcCCHHHHHHHHHHhCCeEEechHHHHHHHHcCCCcCCCCccceeeEEecCCCCCHHHHHHHHHHcC-CCceEe
Confidence 9999998899999999999999999999999999999988776678899999999999999999999999998 6 8888
Q ss_pred cC
Q 019348 341 KI 342 (342)
Q Consensus 341 ~Y 342 (342)
.|
T Consensus 313 ~Y 314 (513)
T PRK07656 313 GY 314 (513)
T ss_pred EE
Confidence 77
No 20
>PRK08180 feruloyl-CoA synthase; Reviewed
Probab=100.00 E-value=2.5e-40 Score=313.28 Aligned_cols=305 Identities=20% Similarity=0.242 Sum_probs=236.2
Q ss_pred CCHHHHHhhhcccCCCceEEEeCC---CCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhC
Q 019348 27 FSMVHFLFRNSASYSSKLALIDAD---SDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIG 103 (342)
Q Consensus 27 ~~l~~~l~~~~~~~p~~~a~~~~~---~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G 103 (342)
.++.+.|.+.++++|+++|+++.+ ..+++||+||.++++++|+.|.+.|+++||+|+++++|+++++++++||+++|
T Consensus 39 ~~l~~~l~~~a~~~p~~~a~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~G 118 (614)
T PRK08180 39 RRLTDRLVHWAQEAPDRVFLAERGADGGWRRLTYAEALERVRAIAQALLDRGLSAERPLMILSGNSIEHALLALAAMYAG 118 (614)
T ss_pred ccHHHHHHHHHHHCCCCceeeeccCCCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHHHHHHcC
Confidence 689999999999999999998752 13689999999999999999999999999999999999999999999999999
Q ss_pred CeEeccCCCCC-----HHHHHHHhhhcCceEEEEcccc--hhhhhcc---CCCeEEecCCCccccccccccccccccHHH
Q 019348 104 AIASTANPVYT-----VSELSKQVKDSNPKLVITVPEL--WDKVKDL---NLPAVLLGSKDKVSSSGLISRSSKIVSFHD 173 (342)
Q Consensus 104 ~~~v~l~~~~~-----~~~l~~~l~~~~~~~vi~~~~~--~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (342)
++++|++|.++ .+++.++++.++++++|+++.. ...+... ....+..... ........+.+
T Consensus 119 av~vpl~~~~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~i~~~~~---------~~~~~~~~~~~ 189 (614)
T PRK08180 119 VPYAPVSPAYSLVSQDFGKLRHVLELLTPGLVFADDGAAFARALAAVVPADVEVVAVRGA---------VPGRAATPFAA 189 (614)
T ss_pred CeEeeeccccccccCCHHHHHHHHhcCCCcEEEEcCHHHHHHHHhhhccCCceEEEecCC---------CCCcccccHHH
Confidence 99999999988 7899999999999999997542 2222211 1112222111 00111234555
Q ss_pred HHhccCCCC-CCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhcccc--CCCeEEEEccchhHHHHH
Q 019348 174 LIELSGSVT-DIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVG--ELDHVVLCVLPMFHVFGL 250 (342)
Q Consensus 174 ~~~~~~~~~-~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~--~~~d~~~~~~p~~~~~g~ 250 (342)
+........ ........++++++|+|||||||.||||++||+++...+... ...+.. ..++++++.+|++|.+|+
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~l~~~~~~~--~~~~~~~~~~~~~~l~~lPl~h~~g~ 267 (614)
T PRK08180 190 LLATPPTAAVDAAHAAVGPDTIAKFLFTSGSTGLPKAVINTHRMLCANQQML--AQTFPFLAEEPPVLVDWLPWNHTFGG 267 (614)
T ss_pred HhccccccchhhhccCCCcCceEEEEECCCCCCCCCEEEeehHHHHHHHHHH--HhhccccCCCCcEEEEecchHHHhhH
Confidence 553321000 011123457899999999999999999999999998875442 222332 256899999999999998
Q ss_pred HHHHHHHhhcCCeEEEccC-CCH---HHHHHHHHhccceEEEecHHHHHHHHcCCC----CCccCCCCceEEEeecccCC
Q 019348 251 SVILYDQLQKGNCVVSMGK-FDI---EMALRAIEKYRVTVWWVVPPIILALAKNSL----VRKFDISSLKLVGSGAAPLG 322 (342)
Q Consensus 251 ~~~~~~~l~~G~~~v~~~~-~~~---~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~----~~~~~l~~lr~~~~gG~~l~ 322 (342)
...++.++..|+++++.+. +++ ..+++.++++++|+++++|.+++.|++... ....++++||.+++||++++
T Consensus 268 ~~~~~~~l~~G~~v~~~~~~~~~~~~~~~l~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~lr~v~~gGa~l~ 347 (614)
T PRK08180 268 NHNLGIVLYNGGTLYIDDGKPTPGGFDETLRNLREISPTVYFNVPKGWEMLVPALERDAALRRRFFSRLKLLFYAGAALS 347 (614)
T ss_pred HHHHHHHHhcCCEEEEeCCCccchhHHHHHHHHHHhCCcEEechHHHHHHHHHHHHhchhhhhhhccceeEEEEccCCCC
Confidence 6778899999999999763 444 467888999999999999999999887432 22345789999999999999
Q ss_pred HHHHHHHHHh----CC-CCcccccC
Q 019348 323 KELMEDCQKN----IP-GATIFQKI 342 (342)
Q Consensus 323 ~~~~~~~~~~----~~-~~~l~~~Y 342 (342)
+++.+++++. ++ ++++++.|
T Consensus 348 ~~~~~~~~~~~~~~~g~~~~l~~~Y 372 (614)
T PRK08180 348 QDVWDRLDRVAEATCGERIRMMTGL 372 (614)
T ss_pred HHHHHHHHHHHHhhcCCCceeeeee
Confidence 9999999875 33 36778877
No 21
>TIGR02316 propion_prpE propionate--CoA ligase. This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate.
Probab=100.00 E-value=2.4e-40 Score=314.16 Aligned_cols=309 Identities=22% Similarity=0.286 Sum_probs=240.4
Q ss_pred CCH-HHHHhhhcccCCCceEEEeCC----CCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHH
Q 019348 27 FSM-VHFLFRNSASYSSKLALIDAD----SDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIA 101 (342)
Q Consensus 27 ~~l-~~~l~~~~~~~p~~~a~~~~~----~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~ 101 (342)
.|+ .+.+.+++..+|+++|+++.+ ..+++||+||.+++.++|+.|++.|+++||+|+++++|+++++++++||++
T Consensus 51 ~n~~~~~l~~~~~~~p~~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~n~~e~v~~~lA~~~ 130 (628)
T TIGR02316 51 TNLCHNALDRHLDERGEQLALVTVSSETGQERTLTYRQLHREVNVFASALRALGVGRGDRVLIYMPMIAEAVFAMLACAR 130 (628)
T ss_pred eeHHHHHHHHHhCcCCCCeEEEEEcCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHH
Confidence 344 567778888899999998732 247899999999999999999999999999999999999999999999999
Q ss_pred hCCeEeccCCCCCHHHHHHHhhhcCceEEEEcccch---------hhh----hcc---CCCeEEecCCCccccccccccc
Q 019348 102 IGAIASTANPVYTVSELSKQVKDSNPKLVITVPELW---------DKV----KDL---NLPAVLLGSKDKVSSSGLISRS 165 (342)
Q Consensus 102 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~----~~~---~~~~~~~~~~~~~~~~~~~~~~ 165 (342)
+|++++|+++.++.+++.+++++++|+++|+++... ..+ ... ....+.++..... .. ...
T Consensus 131 ~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~--~~--~~~ 206 (628)
T TIGR02316 131 IGAIHSVVFGGFASHSLALRIDDATPKLIVSADAGMRGGKVIPYKPLLDAAIAEAQHPPPHVLLVDRGLAP--MR--LIP 206 (628)
T ss_pred hCCEEEecCCCCCHHHHHHHHHhcCceEEEECCccccCCcccccHHHHHHHHHhcCCCCCEEEEEeCCCCC--cC--ccc
Confidence 999999999999999999999999999999976432 111 111 1123333321100 00 000
Q ss_pred cccccHHHHHhccCCCCCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchh
Q 019348 166 SKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMF 245 (342)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~ 245 (342)
.....|.++...... .........++++++|+|||||||.||||+++|.+++.... ......+...++|++++..|++
T Consensus 207 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~-~~~~~~~~~~~~d~~~~~~~~~ 284 (628)
T TIGR02316 207 GRDVDYAALRTQHED-AQVPVEWLESNEPSYILYTSGTTGKPKGVQRDVGGYAVALA-LSMWAIFGIRAGQVMFSASDVG 284 (628)
T ss_pred CccccHHHHhhcccc-CCCCceecCCCCcEEEEECCCCCCCCceEEECCcHHHHHHH-HHHHHhcCCCCCcEEEEcCCCC
Confidence 112345555443210 11122234678999999999999999999999999754321 1133445567889999999999
Q ss_pred HHHHHHHHHHHHhhcCCeEEEccC----CCHHHHHHHHHhccceEEEecHHHHHHHHcCCC--CCccCCCCceEEEeecc
Q 019348 246 HVFGLSVILYDQLQKGNCVVSMGK----FDIEMALRAIEKYRVTVWWVVPPIILALAKNSL--VRKFDISSLKLVGSGAA 319 (342)
Q Consensus 246 ~~~g~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~--~~~~~l~~lr~~~~gG~ 319 (342)
|+.++...++.+|..|+++++.+. .++..+++.++++++|+++++|++++.|.+... ....++++||.+++||+
T Consensus 285 ~~~g~~~~~~~~L~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~~~~gGe 364 (628)
T TIGR02316 285 WVVGHSYIVYAPLLAGAATVLYEGLPTNPDPGVWWSIVERYGVRTMFSAPTAIRVLKKQDAAWLRKHDLSSLHWLFLAGE 364 (628)
T ss_pred eeehhhHHHHHHHhccceEEEeCCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCCcccccCCccceeEEEEecC
Confidence 999876778999999999999863 478999999999999999999999999987653 23567899999999999
Q ss_pred cCCHHHHHHHHHhCCCCcccccC
Q 019348 320 PLGKELMEDCQKNIPGATIFQKI 342 (342)
Q Consensus 320 ~l~~~~~~~~~~~~~~~~l~~~Y 342 (342)
++++++.+++++.++ ..+++.|
T Consensus 365 ~l~~~~~~~~~~~~~-~~~~~~y 386 (628)
T TIGR02316 365 PLDEPTAHWITDGLG-KPVIDNY 386 (628)
T ss_pred CCCHHHHHHHHHHhC-CCEEecc
Confidence 999999999999887 7888877
No 22
>PRK08279 long-chain-acyl-CoA synthetase; Validated
Probab=100.00 E-value=1.9e-40 Score=313.79 Aligned_cols=304 Identities=21% Similarity=0.283 Sum_probs=247.0
Q ss_pred CCCCCHHHHHhhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhC
Q 019348 24 DPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIG 103 (342)
Q Consensus 24 ~~~~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G 103 (342)
..+.|+.+.|.+.++++||++|+++. ++.+||+||.++++++|..|.+.|+++||+|+++++|+.+++++++||+++|
T Consensus 34 ~~~~tl~~~l~~~a~~~p~~~Ai~~~--~~~~Ty~eL~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~v~~~lA~~~~G 111 (600)
T PRK08279 34 DSKRSLGDVFEEAAARHPDRPALLFE--DQSISYAELNARANRYAHWAAARGVGKGDVVALLMENRPEYLAAWLGLAKLG 111 (600)
T ss_pred CCcccHHHHHHHHHHhCCCCcEEEeC--CCcccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHhcC
Confidence 34479999999999999999999987 7899999999999999999999999999999999999999999999999999
Q ss_pred CeEeccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhccC-----CCeEEecCCCccccccccccccccccHHHHHhcc
Q 019348 104 AIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN-----LPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELS 178 (342)
Q Consensus 104 ~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (342)
++++++++..+.+++.++++.+++++++++++..+.+.+.. ...+....... ......+.++....
T Consensus 112 ~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~ 182 (600)
T PRK08279 112 AVVALLNTQQRGAVLAHSLNLVDAKHLIVGEELVEAFEEARADLARPPRLWVAGGDT---------LDDPEGYEDLAAAA 182 (600)
T ss_pred cEEeecCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHhhhhcccceEEEecCcc---------ccccccHHHHhhhc
Confidence 99999999999999999999999999999987766554332 11222221100 00011233333211
Q ss_pred CCCC---CCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHHHHHH
Q 019348 179 GSVT---DIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILY 255 (342)
Q Consensus 179 ~~~~---~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~ 255 (342)
.... .........+++++|+|||||||.||||++||.++.+.+.. ....+...++|++++..|++|.+++...++
T Consensus 183 ~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PKgV~~sh~~l~~~~~~--~~~~~~l~~~d~~l~~~pl~h~~g~~~~~~ 260 (600)
T PRK08279 183 AGAPTTNPASRSGVTAKDTAFYIYTSGTTGLPKAAVMSHMRWLKAMGG--FGGLLRLTPDDVLYCCLPLYHNTGGTVAWS 260 (600)
T ss_pred ccCCccCCCcccCCCccccEEEEEcCCCCCCCcEEEEeHHHHHHHHHH--HHHhcCCCCCcEEEEecCchhhhhHHHHHH
Confidence 1001 11123345689999999999999999999999999998665 334466778999999999999999966778
Q ss_pred HHhhcCCeEEEccCCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCCHHHHHHHHHhCCC
Q 019348 256 DQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPG 335 (342)
Q Consensus 256 ~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~ 335 (342)
.++..|+++++.+.+++..+++.++++++|++.++|++++.++...........++|.+ +|+.+++++.++|.+.||.
T Consensus 261 ~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~l~~~l~~~~~~~~~~~~~l~~~--~g~~l~~~~~~~~~~~~~~ 338 (600)
T PRK08279 261 SVLAAGATLALRRKFSASRFWDDVRRYRATAFQYIGELCRYLLNQPPKPTDRDHRLRLM--IGNGLRPDIWDEFQQRFGI 338 (600)
T ss_pred HHHhcCcEEEEcCCCCHHHHHHHHHHhcceEEeehHHHHHHHHhCCCCccccCcceeEE--ecCCCCHHHHHHHHHHhCc
Confidence 88999999999999999999999999999999999999999988765544456677764 4778999999999999985
Q ss_pred CcccccC
Q 019348 336 ATIFQKI 342 (342)
Q Consensus 336 ~~l~~~Y 342 (342)
..+++.|
T Consensus 339 ~~l~~~Y 345 (600)
T PRK08279 339 PRILEFY 345 (600)
T ss_pred ceeeeee
Confidence 5688877
No 23
>PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed
Probab=100.00 E-value=7.2e-40 Score=306.73 Aligned_cols=300 Identities=24% Similarity=0.302 Sum_probs=247.9
Q ss_pred CCHHHHHhhhcccCCCceEEEeCCC----CcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHh
Q 019348 27 FSMVHFLFRNSASYSSKLALIDADS----DESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAI 102 (342)
Q Consensus 27 ~~l~~~l~~~~~~~p~~~a~~~~~~----~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~ 102 (342)
.++.+.|.+.++.+||++|+++.+. .+.+||+||.++++++|++|.+.|+++||+|+++++|+++++++++||+++
T Consensus 24 ~~l~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~Val~~~n~~e~~~~~la~~~~ 103 (547)
T PRK13295 24 RTINDDLDACVASCPDKTAVTAVRLGTGAPRRFTYRELAALVDRVAVGLARLGVGRGDVVSCQLPNWWEFTVLYLACSRI 103 (547)
T ss_pred CCHHHHHHHHHHHCCCceEEEecCCCccccceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHHHHHHhc
Confidence 5899999999999999999997631 279999999999999999999999999999999999999999999999999
Q ss_pred CCeEeccCCCCCHHHHHHHhhhcCceEEEEcccch-----hhhhcc-----CCC-eEEecCCCccccccccccccccccH
Q 019348 103 GAIASTANPVYTVSELSKQVKDSNPKLVITVPELW-----DKVKDL-----NLP-AVLLGSKDKVSSSGLISRSSKIVSF 171 (342)
Q Consensus 103 G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~-----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (342)
|++++|++|..+.+++.++++.+++++++++++.. ....++ ... .+.++.. ....+
T Consensus 104 G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~ 170 (547)
T PRK13295 104 GAVLNPLMPIFRERELSFMLKHAESKVLVVPKTFRGFDHAAMARRLRPELPALRHVVVVGGD-------------GADSF 170 (547)
T ss_pred CcEEeccccccCHHHHHHHHHhcCceEEEEeccccCcchHHHHHHHhhhCCCcceEEEecCC-------------CccCH
Confidence 99999999999999999999999999999987642 111111 111 1222111 11233
Q ss_pred HHHHhccC-----CC-CCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchh
Q 019348 172 HDLIELSG-----SV-TDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMF 245 (342)
Q Consensus 172 ~~~~~~~~-----~~-~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~ 245 (342)
.++..... .. .........++++++|+|||||||.||+|+++|+++...+.. ....+.+..+|++++..|++
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~--~~~~~~~~~~~~~l~~~p~~ 248 (547)
T PRK13295 171 EALLITPAWEQEPDAPAILARLRPGPDDVTQLIYTSGTTGEPKGVMHTANTLMANIVP--YAERLGLGADDVILMASPMA 248 (547)
T ss_pred HHHhhCCccccccccccccccCCCCCcceeEEEeCCCCCCCCCEEEeccHHHHHHHHH--HHHHhCCCCCCeEEEecCch
Confidence 33332110 00 011112345689999999999999999999999999887554 34445567889999999999
Q ss_pred HHHHHHHHHHHHhhcCCeEEEccCCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCCHHH
Q 019348 246 HVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKEL 325 (342)
Q Consensus 246 ~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~ 325 (342)
|.++++..++.++..|+++++.+.+++..+++.++++++|++.++|.++..+.........++++||.+++||+++++.+
T Consensus 249 h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~l~~~~~~G~~l~~~~ 328 (547)
T PRK13295 249 HQTGFMYGLMMPVMLGATAVLQDIWDPARAAELIRTEGVTFTMASTPFLTDLTRAVKESGRPVSSLRTFLCAGAPIPGAL 328 (547)
T ss_pred hhhhHHHHHHHHHHcCCeEEeCCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhcccccCCCcccceEEEEecCCCCHHH
Confidence 99998778999999999999999899999999999999999999999999999877666678899999999999999999
Q ss_pred HHHHHHhCCCCcccccC
Q 019348 326 MEDCQKNIPGATIFQKI 342 (342)
Q Consensus 326 ~~~~~~~~~~~~l~~~Y 342 (342)
.+++++.++ +++++.|
T Consensus 329 ~~~~~~~~~-~~~~~~Y 344 (547)
T PRK13295 329 VERARAALG-AKIVSAW 344 (547)
T ss_pred HHHHHHHhC-CCeEEec
Confidence 999999996 8999988
No 24
>PLN03052 acetate--CoA ligase; Provisional
Probab=100.00 E-value=4.2e-40 Score=314.75 Aligned_cols=310 Identities=19% Similarity=0.235 Sum_probs=238.4
Q ss_pred CCHHHH-HhhhcccCCCceEEEeCCCC------cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHH
Q 019348 27 FSMVHF-LFRNSASYSSKLALIDADSD------ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGV 99 (342)
Q Consensus 27 ~~l~~~-l~~~~~~~p~~~a~~~~~~~------~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~ 99 (342)
.|+.+. +.+.+.++|+++|+++.+.+ +++||+||.+++.++|+.|++.|+++||+|+++++|+++++++++||
T Consensus 174 ln~~~~~l~~~~~~~pd~~Ai~~~~e~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrVai~~pn~~e~via~LA~ 253 (728)
T PLN03052 174 LNVAECCLTPKPSKTDDSIAIIWRDEGSDDLPVNRMTLSELRSQVSRVANALDALGFEKGDAIAIDMPMNVHAVIIYLAI 253 (728)
T ss_pred eEHHHHHHHHHhccCCCCeEEEEECCCCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHH
Confidence 466554 44444678999999976432 48999999999999999999999999999999999999999999999
Q ss_pred HHhCCeEeccCCCCCHHHHHHHhhhcCceEEEEcccchh---------hhhcc-CCCeEEecCCCccccccccccccccc
Q 019348 100 IAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWD---------KVKDL-NLPAVLLGSKDKVSSSGLISRSSKIV 169 (342)
Q Consensus 100 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~---------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (342)
+++|++++|++|.++.+++.+++++++++++|+++.... .+.+. ....+.+........ ........
T Consensus 254 ~~~Gav~vpi~p~~~~~~l~~rl~~~~~k~lit~d~~~~~gk~~~~~~~~~~~~~~~~iv~~~~~~~~~---~~~~~~~~ 330 (728)
T PLN03052 254 ILAGCVVVSIADSFAPSEIATRLKISKAKAIFTQDVIVRGGKSIPLYSRVVEAKAPKAIVLPADGKSVR---VKLREGDM 330 (728)
T ss_pred HHcCCEEEeeCCCCCHHHHHHHHHhcCceEEEEcCccccCCcccchHHHHHHhcCCcEEEEeCCCCccc---cccccCCc
Confidence 999999999999999999999999999999999865421 11111 112222221110000 00011234
Q ss_pred cHHHHHhccCCC---CCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhH
Q 019348 170 SFHDLIELSGSV---TDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFH 246 (342)
Q Consensus 170 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~ 246 (342)
.|++++...... ..........+++++|+|||||||.||||+++|.+++..+... .....+.++|++++..|++|
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~IlyTSGTTG~PKgVv~sh~~~l~~~~~~--~~~~~l~~~d~~~~~~~l~w 408 (728)
T PLN03052 331 SWDDFLARANGLRRPDEYKAVEQPVEAFTNILFSSGTTGEPKAIPWTQLTPLRAAADA--WAHLDIRKGDIVCWPTNLGW 408 (728)
T ss_pred cHHHHHhccccccccccccccccCCCCcEEEEecCCCCCCCceEEECchHHHHHHHHH--HHhcCCCCCcEEEECCCcHH
Confidence 566665432100 1111122345899999999999999999999999987654332 22345678899999999999
Q ss_pred HHHHHHHHHHHhhcCCeEEEccC-CCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCCHHH
Q 019348 247 VFGLSVILYDQLQKGNCVVSMGK-FDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKEL 325 (342)
Q Consensus 247 ~~g~~~~~~~~l~~G~~~v~~~~-~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~ 325 (342)
+++. ..++.+|..|+++++.+. .++..+++.++++++|++.++|++++.|.+.......++++||.+++||++++++.
T Consensus 409 ~~g~-~~v~~~L~~Gat~vl~~g~p~~~~~~~~i~~~~vT~l~~~Pt~l~~l~~~~~~~~~dlssLr~i~s~Ge~l~~~~ 487 (728)
T PLN03052 409 MMGP-WLVYASLLNGATLALYNGSPLGRGFAKFVQDAKVTMLGTVPSIVKTWKNTNCMAGLDWSSIRCFGSTGEASSVDD 487 (728)
T ss_pred HhHH-HHHHHHHHhCCEEEEeCCCCCCChHHHHHHHHCCCEEEECHHHHHHHHhcCCcccCChhheeEEEecCCCCCHHH
Confidence 9998 678899999999999864 46678999999999999999999999998876556678999999999999999999
Q ss_pred HHHHHHhCCCCcccccC
Q 019348 326 MEDCQKNIPGATIFQKI 342 (342)
Q Consensus 326 ~~~~~~~~~~~~l~~~Y 342 (342)
..++.+.++..++.+.|
T Consensus 488 ~~~~~~~~~~~~i~~~y 504 (728)
T PLN03052 488 YLWLMSRAGYKPIIEYC 504 (728)
T ss_pred HHHHHHhcCCCCeEeec
Confidence 88888877645677766
No 25
>PRK08316 acyl-CoA synthetase; Validated
Probab=100.00 E-value=5.7e-40 Score=306.18 Aligned_cols=305 Identities=26% Similarity=0.368 Sum_probs=255.1
Q ss_pred CCHHHHHhhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeE
Q 019348 27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA 106 (342)
Q Consensus 27 ~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~ 106 (342)
.++.+++.+.++++|+++|+.+. ++.+||+||.+++.++|..|.+.|+++||+|+++++|+.+++++++||+++|+++
T Consensus 11 ~~l~~~l~~~a~~~~~~~a~~~~--~~~~Ty~~l~~~~~~~a~~L~~~gi~~~~~V~l~~~~~~~~~~~~~a~~~~G~~~ 88 (523)
T PRK08316 11 QTIGDILRRSARRYPDKTALVFG--DRSWTYAELDAAVNRVAAALLDLGLKKGDRVAALGHNSDAYALLWLACARAGAVH 88 (523)
T ss_pred CCHHHHHHHHHHHCCCCeEEEEC--CceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEE
Confidence 68999999999999999999987 7899999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhccC----CCeEEecCCCccccccccccccccccHHHHHhccCCCC
Q 019348 107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN----LPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVT 182 (342)
Q Consensus 107 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (342)
+|+++..+.+++.++++.+++++++++.+....+.... ...+...... ........+..+.++..... .
T Consensus 89 v~l~~~~~~~~i~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~--~ 161 (523)
T PRK08316 89 VPVNFMLTGEELAYILDHSGARAFLVDPALAPTAEAALALLPVDTLILSLVL-----GGREAPGGWLDFADWAEAGS--V 161 (523)
T ss_pred EecccccCHHHHHHHHHhCCCCEEEEccchHHHHHHHhhhcCccceeeeecc-----cccccccchhhHHHHHhcCC--C
Confidence 99999999999999999999999999988766554321 1111111000 00011223444555544332 2
Q ss_pred CCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHHHHHHHHhhcCC
Q 019348 183 DIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGN 262 (342)
Q Consensus 183 ~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~ 262 (342)
.........+++++++|||||||.||+|.+||++++..... .........+|++++..|++|.+++...++.++..|+
T Consensus 162 ~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~--~~~~~~~~~~~~~~~~~p~~h~~g~~~~~~~~~~~G~ 239 (523)
T PRK08316 162 AEPDVELADDDLAQILYTSGTESLPKGAMLTHRALIAEYVS--CIVAGDMSADDIPLHALPLYHCAQLDVFLGPYLYVGA 239 (523)
T ss_pred ccCccCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHH--HHHHhCCCCCceEEEccCCchhhhHHHHHHHHHhcCc
Confidence 22233456789999999999999999999999999887544 3444456788999999999999998666778899999
Q ss_pred eEEEccCCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCCHHHHHHHHHhCCCCcccccC
Q 019348 263 CVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQKI 342 (342)
Q Consensus 263 ~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~Y 342 (342)
++++.+..++..+++.++++++|++.++|.++..++++......+++++|.+++||++++.++.+.+++.+++.++++.|
T Consensus 240 ~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~Y 319 (523)
T PRK08316 240 TNVILDAPDPELILRTIEAERITSFFAPPTVWISLLRHPDFDTRDLSSLRKGYYGASIMPVEVLKELRERLPGLRFYNCY 319 (523)
T ss_pred eEEEecCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHcCcccccCCcccceEEEEcCCcCCHHHHHHHHHHcCCCceeeee
Confidence 99999888999999999999999999999999999998876777889999999999999999999999999778999887
No 26
>PRK05605 long-chain-fatty-acid--CoA ligase; Validated
Probab=100.00 E-value=1.3e-39 Score=306.78 Aligned_cols=312 Identities=26% Similarity=0.350 Sum_probs=250.6
Q ss_pred CCHHHHHhhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeE
Q 019348 27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA 106 (342)
Q Consensus 27 ~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~ 106 (342)
.++.+++.+.++++|+++|+.+. ++.+||+||.+++.++|+.|.+.|+++||+|+++++|+++++++++||+++|+++
T Consensus 32 ~~l~~~~~~~~~~~p~~~a~~~~--~~~~Ty~ql~~~~~~~A~~L~~~gi~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~ 109 (573)
T PRK05605 32 TTLVDLYDNAVARFGDRPALDFF--GATTTYAELGKQVRRAAAGLRALGVRPGDRVAIVLPNCPQHIVAFYAVLRLGAVV 109 (573)
T ss_pred CCHHHHHHHHHHHCCCCeEEEeC--CCcccHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEE
Confidence 58999999999999999999986 7899999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhcc----CCCe-EEecCCCccccc-----------------ccccc
Q 019348 107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDL----NLPA-VLLGSKDKVSSS-----------------GLISR 164 (342)
Q Consensus 107 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~----~~~~-~~~~~~~~~~~~-----------------~~~~~ 164 (342)
+|++|..+.+++.+++++++++++|++++......++ .... +.++........ .....
T Consensus 110 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (573)
T PRK05605 110 VEHNPLYTAHELEHPFEDHGARVAIVWDKVAPTVERLRRTTPLETIVSVNMIAAMPLLQRLALRLPIPALRKARAALTGP 189 (573)
T ss_pred eecCcCCCHHHHHHHHhccCCcEEEechhhHHHHHhhhhccccceeEeeecccccccccccccccccccccccccccccC
Confidence 9999999999999999999999999987765544332 1111 111110000000 00011
Q ss_pred ccccccHHHHHhccCCCC--CCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccc-cCCCeEEEEc
Q 019348 165 SSKIVSFHDLIELSGSVT--DIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELV-GELDHVVLCV 241 (342)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~-~~~~d~~~~~ 241 (342)
..+...|+++........ .........+++++++|||||||.||+|.+||+++...+..... .... ...++++++.
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~-~~~~~~~~~~~~~~~ 268 (573)
T PRK05605 190 APGTVPWETLVDAAIGGDGSDVSHPRPTPDDVALILYTSGTTGKPKGAQLTHRNLFANAAQGKA-WVPGLGDGPERVLAA 268 (573)
T ss_pred CCcceeHHHHhhccccccccccCCCCCCCCCEEEEEcCCCCCCCCcEEEEecHHHHHHHHHHHh-hccccCCCCcEEEEe
Confidence 223345666554322100 01122355789999999999999999999999999877543211 1111 2357899999
Q ss_pred cchhHHHHHHHHHHHHhhcCCeEEEccCCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccC
Q 019348 242 LPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPL 321 (342)
Q Consensus 242 ~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l 321 (342)
.|++|.+|+...++.++..|+++++.+.+++..+++.++++++|++.++|.+++.|.+.......+++++|.+++||+++
T Consensus 269 ~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gg~~l 348 (573)
T PRK05605 269 LPMFHAYGLTLCLTLAVSIGGELVLLPAPDIDLILDAMKKHPPTWLPGVPPLYEKIAEAAEERGVDLSGVRNAFSGAMAL 348 (573)
T ss_pred cChHHHHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHhCCEEEEchHHHHHHHHhCccccCCCchhccEEEECCCcC
Confidence 99999999877788899999999999889999999999999999999999999999988776677889999999999999
Q ss_pred CHHHHHHHHHhCCCCcccccC
Q 019348 322 GKELMEDCQKNIPGATIFQKI 342 (342)
Q Consensus 322 ~~~~~~~~~~~~~~~~l~~~Y 342 (342)
++++.++|++.++ .++++.|
T Consensus 349 ~~~~~~~~~~~~~-~~i~~~Y 368 (573)
T PRK05605 349 PVSTVELWEKLTG-GLLVEGY 368 (573)
T ss_pred CHHHHHHHHHHhC-CCeeccc
Confidence 9999999999886 8888887
No 27
>PRK06187 long-chain-fatty-acid--CoA ligase; Validated
Probab=100.00 E-value=1.2e-39 Score=303.83 Aligned_cols=304 Identities=27% Similarity=0.378 Sum_probs=256.9
Q ss_pred CCCHHHHHhhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCe
Q 019348 26 SFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAI 105 (342)
Q Consensus 26 ~~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~ 105 (342)
+.++.++|.+.++.+|+++|+.+. ++.+||+||++++.++|+.|.+.|+++|++|+++++|+.+++++++||+++|++
T Consensus 5 ~~~l~~~l~~~~~~~p~~~a~~~~--~~~~Ty~~l~~~~~~~a~~L~~~g~~~~~~V~l~~~~~~~~~~~~la~~~~G~~ 82 (521)
T PRK06187 5 PLTIGRILRHGARKHPDKEAVYFD--GRRTTYAELDERVNRLANALRALGVKKGDRVAVFDWNSHEYLEAYFAVPKIGAV 82 (521)
T ss_pred cCCHHHHHHHHHHHCCCceEEEeC--CceEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeE
Confidence 379999999999999999999988 667999999999999999999999999999999999999999999999999999
Q ss_pred EeccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhccC-----CCeEEecCCCccccccccccccccccHHHHHhccCC
Q 019348 106 ASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN-----LPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGS 180 (342)
Q Consensus 106 ~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (342)
++++++..+.+++..+++.+++++++++.+....+.... .+.+......... ........+.+++....
T Consensus 83 ~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~- 156 (521)
T PRK06187 83 LHPINIRLKPEEIAYILNDAEDRVVLVDSEFVPLLAAILPQLPTVRTVIVEGDGPAA-----PLAPEVGEYEELLAAAS- 156 (521)
T ss_pred EEecccCCCHHHHHHHHHhcCCeEEEEcchHHHHHHHHhhccCCccEEEEecCcccc-----ccccccccHHHHhhcCC-
Confidence 999999999999999999999999999988766554432 1122222221100 11234455666655433
Q ss_pred CCCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHHHHHHHHhhc
Q 019348 181 VTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQK 260 (342)
Q Consensus 181 ~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~ 260 (342)
..........++++++.|||||||.||+|.+||+++...... ....+....+|++++..|++|.+++ ...+.++..
T Consensus 157 -~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~t~~~l~~~~~~--~~~~~~~~~~d~~~~~~~~~~~~~~-~~~~~~l~~ 232 (521)
T PRK06187 157 -DTFDFPDIDENDAAAMLYTSGTTGHPKGVVLSHRNLFLHSLA--VCAWLKLSRDDVYLVIVPMFHVHAW-GLPYLALMA 232 (521)
T ss_pred -ccCCCCCCCccceEEEEECCCCCCCCceEEeehHHHHHHHHH--HHHhhCCCCCCEEEEeCCchHHhhH-HHHHHHHHh
Confidence 223334556788999999999999999999999999887554 3445567789999999999999998 555559999
Q ss_pred CCeEEEccCCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCCHHHHHHHHHhCCCCcccc
Q 019348 261 GNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQ 340 (342)
Q Consensus 261 G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~ 340 (342)
|+++++++.+++..+++.++++++|.++++|++++.|.+.......+++++|.+++||+++++++.+.|++.++ +++++
T Consensus 233 G~~~v~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~l~~v~~~Ge~l~~~~~~~~~~~~~-~~v~~ 311 (521)
T PRK06187 233 GAKQVIPRRFDPENLLDLIETERVTFFFAVPTIWQMLLKAPRAYFVDFSSLRLVIYGGAALPPALLREFKEKFG-IDLVQ 311 (521)
T ss_pred CCEEEecCCCCHHHHHHHHHHhCCeEEEchHHHHHHHHcCcCCCccCcchhhEEEEcCcCCCHHHHHHHHHHhC-cchhe
Confidence 99999998889999999999999999999999999999988776778999999999999999999999999995 89988
Q ss_pred cC
Q 019348 341 KI 342 (342)
Q Consensus 341 ~Y 342 (342)
.|
T Consensus 312 ~Y 313 (521)
T PRK06187 312 GY 313 (521)
T ss_pred ee
Confidence 87
No 28
>TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase. This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501.
Probab=100.00 E-value=8.6e-40 Score=310.68 Aligned_cols=307 Identities=24% Similarity=0.320 Sum_probs=239.9
Q ss_pred HHHHHhhhcccCCCceEEEeCCC----CcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCC
Q 019348 29 MVHFLFRNSASYSSKLALIDADS----DESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGA 104 (342)
Q Consensus 29 l~~~l~~~~~~~p~~~a~~~~~~----~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~ 104 (342)
..+.+.++++.+|+++|+++.+. .+++||+||.+++.++|+.|++.|+++||+|+++++|+++++++++||+++|+
T Consensus 59 ~~~~l~~~~~~~p~~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Ga 138 (625)
T TIGR02188 59 SYNCVDRHLEARPDKVAIIWEGDEPGEVRKITYRELHREVCRFANVLKSLGVKKGDRVAIYMPMIPEAAIAMLACARIGA 138 (625)
T ss_pred HHHHHHHhhccCCCCeEEEEEcCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCC
Confidence 45566677888999999986532 36899999999999999999999999999999999999999999999999999
Q ss_pred eEeccCCCCCHHHHHHHhhhcCceEEEEcccchh---------hh----hcc--CCC-eEEecCCCcccccccccccccc
Q 019348 105 IASTANPVYTVSELSKQVKDSNPKLVITVPELWD---------KV----KDL--NLP-AVLLGSKDKVSSSGLISRSSKI 168 (342)
Q Consensus 105 ~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~---------~~----~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~ 168 (342)
+++|+++.++.+++.++++.++++++|+++.... .+ ... ... .+.+...... .. ......
T Consensus 139 v~v~i~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~ 214 (625)
T TIGR02188 139 IHSVVFGGFSAEALADRINDAGAKLVITADEGLRGGKVIPLKAIVDEALEKCPVSVEHVLVVRRTGNP--VP--WVEGRD 214 (625)
T ss_pred EEeccCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHHhCCCCccEEEEEcCCCCC--cC--cccccc
Confidence 9999999999999999999999999999865321 11 111 111 2222211100 00 000112
Q ss_pred ccHHHHHhccCCCCCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHH
Q 019348 169 VSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVF 248 (342)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~ 248 (342)
..+.++..... .........++++++|+|||||||.||||+++|.+++..... .....+....+|++++..|++|+.
T Consensus 215 ~~~~~~~~~~~--~~~~~~~~~~~~~a~il~TSGTTG~PKgV~~s~~~~~~~~~~-~~~~~~~~~~~d~~~~~~~~~~~~ 291 (625)
T TIGR02188 215 VWWHDLMAKAS--AYCEPEPMDSEDPLFILYTSGSTGKPKGVLHTTGGYLLYAAM-TMKYVFDIKDGDIFWCTADVGWIT 291 (625)
T ss_pred ccHHHHHhhcC--CCCCceecCCCCceEEEecCCCCCCCCeEEECccHhHHHHHH-HHHhccCCCCCcEEEECCCchhhh
Confidence 34555554332 222233456789999999999999999999999998654221 123344567889999999999999
Q ss_pred HHHHHHHHHhhcCCeEEEccC----CCHHHHHHHHHhccceEEEecHHHHHHHHcCCCC--CccCCCCceEEEeecccCC
Q 019348 249 GLSVILYDQLQKGNCVVSMGK----FDIEMALRAIEKYRVTVWWVVPPIILALAKNSLV--RKFDISSLKLVGSGAAPLG 322 (342)
Q Consensus 249 g~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~--~~~~l~~lr~~~~gG~~l~ 322 (342)
+....++.+|..|+++++.+. .++..+++.++++++|++.++|++++.|.+.... ...++++||.+++||++++
T Consensus 292 g~~~~~~~~l~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~~G~~l~ 371 (625)
T TIGR02188 292 GHSYIVYGPLANGATTVMFEGTPTYPDPGRFWEIIEKHKVTIFYTAPTAIRALMRLGDEWVKKHDLSSLRLLGSVGEPIN 371 (625)
T ss_pred ccHHHHHHHHHcCCeEEEECCCCCCCChhHHHHHHHHhCCeEEEeCHHHHHHHHhcCCcccccCCccceeEEEEecCCCC
Confidence 886678999999999999753 4799999999999999999999999999886532 3456899999999999999
Q ss_pred HHHHHHHHHhCC--CCcccccC
Q 019348 323 KELMEDCQKNIP--GATIFQKI 342 (342)
Q Consensus 323 ~~~~~~~~~~~~--~~~l~~~Y 342 (342)
+++.+++.+.++ ++++++.|
T Consensus 372 ~~~~~~~~~~~~~~~~~i~~~y 393 (625)
T TIGR02188 372 PEAWMWYYKVVGKERCPIVDTW 393 (625)
T ss_pred HHHHHHHHHHcCCCCCceEecc
Confidence 999999999986 37788877
No 29
>PRK07786 long-chain-fatty-acid--CoA ligase; Validated
Probab=100.00 E-value=4.1e-39 Score=301.30 Aligned_cols=299 Identities=25% Similarity=0.337 Sum_probs=247.6
Q ss_pred CCHHHHHhhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeE
Q 019348 27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA 106 (342)
Q Consensus 27 ~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~ 106 (342)
.|+.+.+.+.++.+|+++|+.+. ++.+||.||.++++++|..|.+.|+++||+|+++++|+++++++++||+++|+++
T Consensus 17 ~n~~~~~~~~a~~~~~~~a~~~~--~~~~ty~~l~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~~a~~~~G~~~ 94 (542)
T PRK07786 17 QNWVNQLARHALMQPDAPALRFL--GNTTTWRELDDRVAALAGALSRRGVGFGDRVLILMLNRTEFVESVLAANMLGAIA 94 (542)
T ss_pred cCHHHHHHHHHHHCCCCeEEEeC--CCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEE
Confidence 78999999999999999999987 7899999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhccC-----CCeEEecCCCccccccccccccccccHHHHHhccCCC
Q 019348 107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN-----LPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSV 181 (342)
Q Consensus 107 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (342)
+|+++..+.+++..+++.+++++++++........... ...+....+ ........+.+++....
T Consensus 95 vpl~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~-- 163 (542)
T PRK07786 95 VPVNFRLTPPEIAFLVSDCGAHVVVTEAALAPVATAVRDIVPLLSTVVVAGG---------SSDDSVLGYEDLLAEAG-- 163 (542)
T ss_pred EEcCccCCHHHHHHHHHhCCCcEEEEccchHHHHHHhhhccCccceEEEecC---------CCcccccCHHHHhhccC--
Confidence 99999999999999999999999999987665543321 111221111 11122345555554332
Q ss_pred CCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhcccc-CCCeEEEEccchhHHHHHHHHHHHHhhc
Q 019348 182 TDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVG-ELDHVVLCVLPMFHVFGLSVILYDQLQK 260 (342)
Q Consensus 182 ~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~-~~~d~~~~~~p~~~~~g~~~~~~~~l~~ 260 (342)
..........+++++++|||||||.||+|.++|+++...+.. ....+.. ..++++++..|++|.+|+ ..++.++..
T Consensus 164 ~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~--~~~~~~~~~~~~~~~~~~p~~~~~g~-~~~~~~l~~ 240 (542)
T PRK07786 164 PAHAPVDIPNDSPALIMYTSGTTGRPKGAVLTHANLTGQAMT--CLRTNGADINSDVGFVGVPLFHIAGI-GSMLPGLLL 240 (542)
T ss_pred CCCCCCCCCCCCeEEEEeCCCCCccchhhhhhHHHHHHHHHH--HHHhcCCCCCCceEEEecchHHHHHH-HHHHHHHHc
Confidence 222223345678999999999999999999999999887554 2333333 467899999999999998 788999999
Q ss_pred CCeEEEcc--CCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCCHHHHHHHHHhCCCCcc
Q 019348 261 GNCVVSMG--KFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATI 338 (342)
Q Consensus 261 G~~~v~~~--~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l 338 (342)
|+++++.+ .+++..+++.++++++|.++++|.+++.+.......... .++|.+++||+++++++.+.+++.|++.++
T Consensus 241 G~~~v~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~-~~lr~i~~gg~~~~~~~~~~~~~~~~~~~l 319 (542)
T PRK07786 241 GAPTVIYPLGAFDPGQLLDVLEAEKVTGIFLVPAQWQAVCAEQQARPRD-LALRVLSWGAAPASDTLLRQMAATFPEAQI 319 (542)
T ss_pred cCEEEEccCCCcCHHHHHHHHHHcCCeEEEehHHHHHHHHhCcccCccC-cceEEEEECCCCCCHHHHHHHHHHcCCCeE
Confidence 99999865 579999999999999999999999999998876544333 369999999999999999999999987899
Q ss_pred cccC
Q 019348 339 FQKI 342 (342)
Q Consensus 339 ~~~Y 342 (342)
++.|
T Consensus 320 ~~~Y 323 (542)
T PRK07786 320 LAAF 323 (542)
T ss_pred Eeee
Confidence 9887
No 30
>PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ]. This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A ....
Probab=100.00 E-value=5.3e-41 Score=304.42 Aligned_cols=292 Identities=33% Similarity=0.500 Sum_probs=227.8
Q ss_pred HhhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeEeccCCC
Q 019348 33 LFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPV 112 (342)
Q Consensus 33 l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~ 112 (342)
|+++++++||++|+++ +.++++||+||+++++++|..|++.|+++||+|+++++|+.+++++++||+++|++++|++|.
T Consensus 1 f~~~a~~~pd~~a~~~-~~~~~~Ty~~l~~~v~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~~A~~~~G~~~v~l~~~ 79 (417)
T PF00501_consen 1 FERQAQRYPDRIALID-DEGRSLTYKQLYERVRKLAAALRKLGVKKGDRVAILLPNSIEFVVAFLACLRAGAIPVPLDPS 79 (417)
T ss_dssp HHHHHHHSTTSEEEEE-TTTEEEEHHHHHHHHHHHHHHHHHTTSSTTSEEEEEESSSHHHHHHHHHHHHTT-EEEEEETT
T ss_pred ChhHHhhCCCceEEEE-CCCEEEEHHHHHHHHHHHhhHHHHhCCCccccccccCCccceeeeeecccccccccccccccc
Confidence 6788999999999999 448999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHhhhcCceEEEE----cccchhhhhcc----CCC--eEEecCCCccccccccccccccccHHHHHhccCCCC
Q 019348 113 YTVSELSKQVKDSNPKLVIT----VPELWDKVKDL----NLP--AVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVT 182 (342)
Q Consensus 113 ~~~~~l~~~l~~~~~~~vi~----~~~~~~~~~~~----~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (342)
.+.+++.++++.++++++|+ +......+... ... .+.++.... ...+.+...... .
T Consensus 80 ~~~~~~~~~l~~~~~~~ii~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~-~ 145 (417)
T PF00501_consen 80 LSEDELRHILRQSGPKVIITSEAVDSEPLKKLKSIFKQEDPSSSIIILDRDDL-------------PKKEALKSASLS-D 145 (417)
T ss_dssp SSHHHHHHHHHHHTESEEEECHHHSCHHHHHHHHHHTTSTTTEEEEEESHSSC-------------TTCHHHHHHHHC-H
T ss_pred cccccccccccccceeEEEEeccccccccccchhhhccccccccccccccccc-------------cccccccccccc-c
Confidence 99999999999999999997 22221111111 111 233332210 000111100000 0
Q ss_pred CCCCCC-CCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHHHHHHHHhhcC
Q 019348 183 DIPDVS-VKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKG 261 (342)
Q Consensus 183 ~~~~~~-~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G 261 (342)
... .. ..++++++++|||||||.||+|.++|+++++.+..+........+ |++++..|++|.+|++..++.++..|
T Consensus 146 ~~~-~~~~~~~~~~~i~~TSGTTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~--d~~l~~~p~~~~~g~~~~~~~~l~~G 222 (417)
T PF00501_consen 146 EPQ-SPEDSPDDPAFILFTSGTTGKPKGVVLTHRNLLAQARALALPEYFGLG--DRILSFLPLSHIFGLISALLAALFSG 222 (417)
T ss_dssp CSH-STTHTTTSEEEEEEESSSSSSEEEEEEEHHHHHHHHHHHHHHHTTTTT--TEEEESS-TTSHHHHHHHHHHHHHCT
T ss_pred ccc-cCCCCccceeEeeccccccccccccccccccccccccccccccccccC--ceEEeecccccccccccccccccccc
Confidence 000 00 156899999999999999999999999999987664422222222 59999999999999988899999999
Q ss_pred CeEEEccCCC---HHHHHHHHHhccceEEEecHHHHHHHHcCCCCC----ccCCCCceEEEeecccCCHHHHHHHHHhCC
Q 019348 262 NCVVSMGKFD---IEMALRAIEKYRVTVWWVVPPIILALAKNSLVR----KFDISSLKLVGSGAAPLGKELMEDCQKNIP 334 (342)
Q Consensus 262 ~~~v~~~~~~---~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~----~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~ 334 (342)
+++++++..+ +..+++.++++++|+++++|.+++.+++....+ ..++++||.+++||+++++++.+++++.++
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~~~~~ 302 (417)
T PF00501_consen 223 ATLVLPSPFDLFDPESLLELISRYKPTILFAVPSMLEALLQSPEEKTKISKKDLSSLRTVISGGEPLPPDLLRRLRKAFG 302 (417)
T ss_dssp SEEEEESSHHHHHHHHHHHHHHHHTESEEEEEHHHHHHHHHHHHTTHHGTTTTGTT-SEEEEESST-CHHHHHHHHHHHT
T ss_pred ccccccccccccccccchhcccccccccccccccccccccccccccccccccccccccccccccccCChhhccccccccc
Confidence 9999998754 477899999999999999999999999843222 357889999999999999999999999998
Q ss_pred CCcccccC
Q 019348 335 GATIFQKI 342 (342)
Q Consensus 335 ~~~l~~~Y 342 (342)
..++++.|
T Consensus 303 ~~~i~~~Y 310 (417)
T PF00501_consen 303 NAPIINLY 310 (417)
T ss_dssp TSEEEEEE
T ss_pred cccceecc
Confidence 44888877
No 31
>PLN03102 acyl-activating enzyme; Provisional
Probab=100.00 E-value=1.5e-39 Score=305.90 Aligned_cols=306 Identities=23% Similarity=0.310 Sum_probs=242.7
Q ss_pred CCCCHHHHHhhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCC
Q 019348 25 PSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGA 104 (342)
Q Consensus 25 ~~~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~ 104 (342)
.+.|+.+++.+.++.+||++|+++. +.++||+||.++++++|+.|.+.|+++||+|+|+++|++++++++|||+++|+
T Consensus 12 ~~~~~~~~l~~~~~~~p~~~Al~~~--~~~~Ty~eL~~~~~~~a~~L~~~Gl~~gd~Vai~~~n~~e~~~~~la~~~~G~ 89 (579)
T PLN03102 12 VPLTPITFLKRASECYPNRTSIIYG--KTRFTWPQTYDRCCRLAASLISLNITKNDVVSVLAPNTPAMYEMHFAVPMAGA 89 (579)
T ss_pred ccccHHHHHHHHHHhCCCCeEEEEC--CcEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCc
Confidence 4468899999999999999999987 77999999999999999999999999999999999999999999999999999
Q ss_pred eEeccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhcc-----------CCCeEEecCCCccccccccccccccccHHH
Q 019348 105 IASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDL-----------NLPAVLLGSKDKVSSSGLISRSSKIVSFHD 173 (342)
Q Consensus 105 ~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (342)
+++|++|..+.+++.++++.++++++|++++....+.+. ..+.+.++...... ........+.+
T Consensus 90 ~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~ 164 (579)
T PLN03102 90 VLNPINTRLDATSIAAILRHAKPKILFVDRSFEPLAREVLHLLSSEDSNLNLPVIFIHEIDFPK-----RPSSEELDYEC 164 (579)
T ss_pred EEeeccccCCHHHHHHHHhccCCeEEEEChhhHHHHHHHHhhccccccccCceEEEeccccccc-----CCcccccCHHH
Confidence 999999999999999999999999999988766544332 11233332111000 00112234555
Q ss_pred HHhccCCCCCC---CCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHH
Q 019348 174 LIELSGSVTDI---PDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGL 250 (342)
Q Consensus 174 ~~~~~~~~~~~---~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~ 250 (342)
+.......... ......++++++|+|||||||.||+|+++|.++...... ..........++++..+|++|..++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~d~~~il~TSGTTG~PK~v~~s~~~~~~~~~~--~~~~~~~~~~~~~l~~~pl~h~~g~ 242 (579)
T PLN03102 165 LIQRGEPTPSLVARMFRIQDEHDPISLNYTSGTTADPKGVVISHRGAYLSTLS--AIIGWEMGTCPVYLWTLPMFHCNGW 242 (579)
T ss_pred HHhccCCCCcccccccccCCCCCcEEEEeCCcCCCCCCEEEEecHHHHHHHHH--HHhhcCCCCCCeEEecCChhhhcch
Confidence 54332210100 011235689999999999999999999999997654322 2223344567889999999999998
Q ss_pred HHHHHHHhhcCCeEEEccCCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCCHHHHHHHH
Q 019348 251 SVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQ 330 (342)
Q Consensus 251 ~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~ 330 (342)
...+.++..|+++++.+.+++..+++.++++++|++.++|++++.|.+.........++++.+++||+++++.+.+.++
T Consensus 243 -~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~ 321 (579)
T PLN03102 243 -TFTWGTAARGGTSVCMRHVTAPEIYKNIEMHNVTHMCCVPTVFNILLKGNSLDLSPRSGPVHVLTGGSPPPAALVKKVQ 321 (579)
T ss_pred -hHHHHHHHhcCcEEeeccCChHHHHHHHHHcCCeEEEeChHHHHHHHhCcccccCCcccceEEEECCCCCCHHHHHHHH
Confidence 6677888999999999888999999999999999999999999999987644444566788899999999999999987
Q ss_pred HhCCCCcccccC
Q 019348 331 KNIPGATIFQKI 342 (342)
Q Consensus 331 ~~~~~~~l~~~Y 342 (342)
+ ++ +++++.|
T Consensus 322 ~-~g-~~i~~~Y 331 (579)
T PLN03102 322 R-LG-FQVMHAY 331 (579)
T ss_pred H-cC-CeEEeec
Confidence 6 54 8898887
No 32
>PRK13382 acyl-CoA synthetase; Provisional
Probab=100.00 E-value=1.5e-39 Score=303.60 Aligned_cols=294 Identities=19% Similarity=0.200 Sum_probs=243.1
Q ss_pred CCHHHHHhhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeE
Q 019348 27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA 106 (342)
Q Consensus 27 ~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~ 106 (342)
.++.++|.+.++++||++|+++. ++.+||.||.++++++|++|.+.|+++||+|+++++|+.+++++++||+++|+++
T Consensus 43 ~~~~~~l~~~a~~~p~~~a~~~~--~~~~Ty~el~~~~~~~A~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~ 120 (537)
T PRK13382 43 MGPTSGFAIAAQRCPDRPGLIDE--LGTLTWRELDERSDALAAALQALPIGEPRVVGIMCRNHRGFVEALLAANRIGADI 120 (537)
T ss_pred CCHHHHHHHHHHhCCCCeEEEeC--CCeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCcHHHHHHHHHHHHcCcEE
Confidence 68999999999999999999986 7799999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhccC-----CC-eEEecCCCccccccccccccccccHHHHHhccCC
Q 019348 107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN-----LP-AVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGS 180 (342)
Q Consensus 107 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (342)
+|+++.++.+++.++++.++++++|++.+....+.... .. .+..... .....++.+.....
T Consensus 121 vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~- 187 (537)
T PRK13382 121 LLLNTSFAGPALAEVVTREGVDTVIYDEEFSATVDRALADCPQATRIVAWTDE------------DHDLTVEVLIAAHA- 187 (537)
T ss_pred EecCcccCHHHHHHHHHhcCCCEEEEchhhHHHHHHHHhhccccceEEEecCC------------cccccHHHHhhccC-
Confidence 99999999999999999999999999977655443211 11 1111110 01123344333211
Q ss_pred CCCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHHHHHHHHhhc
Q 019348 181 VTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQK 260 (342)
Q Consensus 181 ~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~ 260 (342)
.. .....+++.++++|||||||.||||+++|.++...... ....+....+++++...|++|.+|+ ..++.++..
T Consensus 188 -~~--~~~~~~~~~~~il~TSGTTG~PKgv~~s~~~~~~~~~~--~~~~~~~~~~~~~l~~~p~~~~~g~-~~~~~~l~~ 261 (537)
T PRK13382 188 -GQ--RPEPTGRKGRVILLTSGTTGTPKGARRSGPGGIGTLKA--ILDRTPWRAEEPTVIVAPMFHAWGF-SQLVLAASL 261 (537)
T ss_pred -cC--CCCCCCCCCeEEEECCCCCCCCCEEEeccchHHHHHHH--HHHhhCCCCCCeEEEecChHhhhHH-HHHHHHHhc
Confidence 11 11234678899999999999999999999888776433 3334445678899999999999998 788999999
Q ss_pred CCeEEEccCCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCC--CccCCCCceEEEeecccCCHHHHHHHHHhCCCCcc
Q 019348 261 GNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLV--RKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATI 338 (342)
Q Consensus 261 G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~--~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l 338 (342)
|+++++.+.+++..+++.++++++|++.++|++++.|++.... ...+++++|.+++||+++++++.++|.+.+| .++
T Consensus 262 g~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~-~~i 340 (537)
T PRK13382 262 ACTIVTRRRFDPEATLDLIDRHRATGLAVVPVMFDRIMDLPAEVRNRYSGRSLRFAAASGSRMRPDVVIAFMDQFG-DVI 340 (537)
T ss_pred CcEEEECCCcCHHHHHHHHHHhCCEEEEehHHHHHHHHcCCchhcccCCccceeEEEEcCCCCCHHHHHHHHHHcC-CcE
Confidence 9999999999999999999999999999999999999876532 2345678999999999999999999999998 789
Q ss_pred cccC
Q 019348 339 FQKI 342 (342)
Q Consensus 339 ~~~Y 342 (342)
++.|
T Consensus 341 ~~~Y 344 (537)
T PRK13382 341 YNNY 344 (537)
T ss_pred Eecc
Confidence 9888
No 33
>PTZ00237 acetyl-CoA synthetase; Provisional
Probab=100.00 E-value=6.2e-40 Score=311.44 Aligned_cols=310 Identities=24% Similarity=0.249 Sum_probs=232.6
Q ss_pred HHHHHhhhccc--CCCceEEEeCCC----CcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHh
Q 019348 29 MVHFLFRNSAS--YSSKLALIDADS----DESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAI 102 (342)
Q Consensus 29 l~~~l~~~~~~--~p~~~a~~~~~~----~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~ 102 (342)
..+++.+++.. +|+++|+++... .+++||+||.+++.++|..|++.|+++||+|+++++|++++++++|||+++
T Consensus 61 ~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GDrV~i~~~n~~e~~~~~lA~~~~ 140 (647)
T PTZ00237 61 CYNVLDIHVKNPLKRDQDALIYECPYLKKTIKLTYYQLYEKVCEFSRVLLNLNISKNDNVLIYMANTLEPLIAMLSCARI 140 (647)
T ss_pred HHHHHHHhhcccCCCCceEEEEEcCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHh
Confidence 45566666644 799999986421 368999999999999999999999999999999999999999999999999
Q ss_pred CCeEeccCCCCCHHHHHHHhhhcCceEEEEcccc---------hhhhhc---c---CC-CeEEecCCCcc--cc---ccc
Q 019348 103 GAIASTANPVYTVSELSKQVKDSNPKLVITVPEL---------WDKVKD---L---NL-PAVLLGSKDKV--SS---SGL 161 (342)
Q Consensus 103 G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~---------~~~~~~---~---~~-~~~~~~~~~~~--~~---~~~ 161 (342)
|++++|+++.++.+++.+++++++++++|+++.. .+.+.+ . .. ..+........ .. ...
T Consensus 141 Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~ 220 (647)
T PTZ00237 141 GATHCVLFDGYSVKSLIDRIETITPKLIITTNYGILNDEIITFTPNLKEAIELSTFKPSNVITLFRNDITSESDLKKIET 220 (647)
T ss_pred CcEEEeeCCCCCHHHHHHHHHhcCCCEEEEcccceeCCceechHHHHHHHHhcccCCCCEEEEEEcCCcccccccccccc
Confidence 9999999999999999999999999999997521 111111 0 11 12222111000 00 000
Q ss_pred cccccccccHHHHHhccCC---CCCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHH-HHHHhhhhhhhhccccCCCeE
Q 019348 162 ISRSSKIVSFHDLIELSGS---VTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKN-FIAASLMISAHQELVGELDHV 237 (342)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~-l~~~~~~~~~~~~~~~~~~d~ 237 (342)
.........|++++..... ..........++++++|+|||||||.||||+++|.+ +...... .........+|+
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~IlyTSGTTG~PKgV~~sh~~~l~~~~~~--~~~~~~~~~~d~ 298 (647)
T PTZ00237 221 IPTIPNTLSWYDEIKKIKENNQSPFYEYVPVESSHPLYILYTSGTTGNSKAVVRSNGPHLVGLKYY--WRSIIEKDIPTV 298 (647)
T ss_pred cCCCcccccHHHHHhhhccccCCCCCCceeeCCCCcEEEEEcCCCCCCCCeEEEcCcHHHHHHHHH--HHHhcCCCCCcE
Confidence 0111123456666542110 011122345678999999999999999999999998 4433211 223334556899
Q ss_pred EEEccchhHHHHHHHHHHHHhhcCCeEEEccC--CC----HHHHHHHHHhccceEEEecHHHHHHHHcCCC-----CCcc
Q 019348 238 VLCVLPMFHVFGLSVILYDQLQKGNCVVSMGK--FD----IEMALRAIEKYRVTVWWVVPPIILALAKNSL-----VRKF 306 (342)
Q Consensus 238 ~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~--~~----~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~-----~~~~ 306 (342)
+++..|++|+.+. ..++.+|..|+++++.+. +. +..+++.++++++|+++++|++++.|.+... ....
T Consensus 299 ~~~~~~~~w~~~~-~~~~~~l~~G~t~v~~~~~~~~p~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~ 377 (647)
T PTZ00237 299 VFSHSSIGWVSFH-GFLYGSLSLGNTFVMFEGGIIKNKHIEDDLWNTIEKHKVTHTLTLPKTIRYLIKTDPEATIIRSKY 377 (647)
T ss_pred EEEcCCCceEeeH-HHHHHHHhCCcEEEEeCCCCCCCCCchHHHHHHHHHhCeEEEEeCHHHHHHHHhhCcccccccccc
Confidence 9999999998766 678999999999999754 22 6889999999999999999999999987532 2345
Q ss_pred CCCCceEEEeecccCCHHHHHHHHHhCCCCcccccC
Q 019348 307 DISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQKI 342 (342)
Q Consensus 307 ~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~Y 342 (342)
++++||.+++||+++++++.+++++.++ +++++.|
T Consensus 378 ~l~~Lr~i~~~G~~l~~~~~~~~~~~~g-~~i~~~y 412 (647)
T PTZ00237 378 DLSNLKEIWCGGEVIEESIPEYIENKLK-IKSSRGY 412 (647)
T ss_pred CcchheEEEecCccCCHHHHHHHHHhcC-CCEEeee
Confidence 7899999999999999999999999997 8998887
No 34
>PRK04319 acetyl-CoA synthetase; Provisional
Probab=100.00 E-value=2.3e-39 Score=304.61 Aligned_cols=303 Identities=26% Similarity=0.390 Sum_probs=245.8
Q ss_pred CCHH-HHHhhhcc-cCCCceEEEeCC--CCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHh
Q 019348 27 FSMV-HFLFRNSA-SYSSKLALIDAD--SDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAI 102 (342)
Q Consensus 27 ~~l~-~~l~~~~~-~~p~~~a~~~~~--~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~ 102 (342)
.++. +.+.+.+. .+|+++|+.+.+ ..+++||+||.+++.++|..|.+.|+++||+|+++++|+++++++++||+++
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~la~~~~ 121 (570)
T PRK04319 42 VNIAYEAIDRHADGGRKDKVALRYLDASRKEKYTYKELKELSNKFANVLKELGVEKGDRVFIFMPRIPELYFALLGALKN 121 (570)
T ss_pred eeHHHHHHHHhhccCCCCceEEEEECCCCceeecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHHc
Confidence 4555 57777766 579999998753 3478999999999999999999999999999999999999999999999999
Q ss_pred CCeEeccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhccC---CC-eEEecCCCccccccccccccccccHHHHHhcc
Q 019348 103 GAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN---LP-AVLLGSKDKVSSSGLISRSSKIVSFHDLIELS 178 (342)
Q Consensus 103 G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (342)
|++++|+++..+.+++.++++.++++++++++.......... .. .+.++... ........+.+++...
T Consensus 122 G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~ 193 (570)
T PRK04319 122 GAIVGPLFEAFMEEAVRDRLEDSEAKVLITTPALLERKPADDLPSLKHVLLVGEDV--------EEGPGTLDFNALMEQA 193 (570)
T ss_pred CcEEcccccccCHHHHHHHHHccCCcEEEEChhhhhccchhcCCCceEEEEECCCc--------CCCcCccCHHHHHhhc
Confidence 999999999999999999999999999999877654332111 11 22222110 0112334566655443
Q ss_pred CCCCCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHHHHHHHHh
Q 019348 179 GSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQL 258 (342)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l 258 (342)
. .........++++++|+|||||||.||+|+++|+++...+.. ....+.+..+|++++..|++|.+|....++.++
T Consensus 194 ~--~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~--~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~l 269 (570)
T PRK04319 194 S--DEFDIEWTDREDGAILHYTSGSTGKPKGVLHVHNAMLQHYQT--GKYVLDLHEDDVYWCTADPGWVTGTSYGIFAPW 269 (570)
T ss_pred C--CcCCccccCCCCCEEEEeCCCCCCCCCEEEEecHHHHHHHHH--HHHhcCCCCCceEEecCChHHhhCchHHHHHHH
Confidence 3 222233446789999999999999999999999999877443 344555678899999999999999877899999
Q ss_pred hcCCeEEEcc-CCCHHHHHHHHHhccceEEEecHHHHHHHHcCCC--CCccCCCCceEEEeecccCCHHHHHHHHHhCCC
Q 019348 259 QKGNCVVSMG-KFDIEMALRAIEKYRVTVWWVVPPIILALAKNSL--VRKFDISSLKLVGSGAAPLGKELMEDCQKNIPG 335 (342)
Q Consensus 259 ~~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~--~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~ 335 (342)
..|+++++.+ .+++..+++.++++++|+++++|.+++.|.+... ....++++||.+++||+++++++.+++++.++
T Consensus 270 ~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~g- 348 (570)
T PRK04319 270 LNGATNVIDGGRFSPERWYRILEDYKVTVWYTAPTAIRMLMGAGDDLVKKYDLSSLRHILSVGEPLNPEVVRWGMKVFG- 348 (570)
T ss_pred hcCceEEEECCCCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhcCCcccccCCcccceEEEEcccCCCHHHHHHHHHHhC-
Confidence 9999999875 6899999999999999999999999999987643 23456889999999999999999999999987
Q ss_pred CcccccC
Q 019348 336 ATIFQKI 342 (342)
Q Consensus 336 ~~l~~~Y 342 (342)
.++++.|
T Consensus 349 ~~i~~~Y 355 (570)
T PRK04319 349 LPIHDNW 355 (570)
T ss_pred CCeEece
Confidence 8898887
No 35
>TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB.
Probab=100.00 E-value=2.6e-39 Score=301.69 Aligned_cols=298 Identities=21% Similarity=0.269 Sum_probs=245.1
Q ss_pred CCHHHHHhhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeE
Q 019348 27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA 106 (342)
Q Consensus 27 ~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~ 106 (342)
.++.++|.+.++.+|+++|+++. ++++||+||.++++++|..|.+.|+++|++|+++++|+.+++++++||+++|+++
T Consensus 23 ~~l~~~~~~~a~~~p~~~a~~~~--~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~la~~~~G~~~ 100 (527)
T TIGR02275 23 KPLTDILRDQAARYPDAIAIICG--NRQWSYRELDQRADNLAAGLTKLGIGQGDTAVVQLPNIAEFYIVFFALLKLGIAP 100 (527)
T ss_pred CcHHHHHHHHHHHCCCceEEEeC--CceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHcCeEE
Confidence 68999999999999999999987 7899999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCHHHHHHHhhhcCceEEEEcccchh-----hhhcc-----CCCeEEecCCCccccccccccccccccHHHHHh
Q 019348 107 STANPVYTVSELSKQVKDSNPKLVITVPELWD-----KVKDL-----NLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIE 176 (342)
Q Consensus 107 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~-----~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (342)
+++++..+.+++.++++.+++++++++..... ..... ....+.+.... ...........
T Consensus 101 v~~~~~~~~~~~~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~ 169 (527)
T TIGR02275 101 VLALFSHRKSELTAYAQQIEPALYIIDRAHSLFDYDAFARQLQSKLPTLRNIIVAGQT-----------RVEAELFLWLE 169 (527)
T ss_pred eccccccCHHHHHHHHHhcCCcEEEEcCcccccchHHHHHHHHhhCCcceEEEEecCC-----------CCcchhhHHhh
Confidence 99999999999999999999999999865321 11111 01112211110 00001111111
Q ss_pred ccCCCCCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHHH-HHH
Q 019348 177 LSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSV-ILY 255 (342)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~-~~~ 255 (342)
... .........++++++++|||||||.||+|++||.++..+... .........+|++++.+|++|.+++.. .++
T Consensus 170 ~~~--~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~--~~~~~~~~~~d~~l~~~P~~h~~~~~~~~~~ 245 (527)
T TIGR02275 170 SPA--EPVKFPPTKSDEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRR--SVEICWLTQQTRYLCALPAAHNYPLSSPGAL 245 (527)
T ss_pred CcC--ccccCCCCCCCccEEEEeCCCCCCCCceeeeehHHHHHHHHH--HHhhcCCCcCCEEEECCChHhhhhhhHHHHH
Confidence 111 111223456789999999999999999999999999887554 334455678899999999999999844 478
Q ss_pred HHhhcCCeEEEccCCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCCHHHHHHHHHhCCC
Q 019348 256 DQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPG 335 (342)
Q Consensus 256 ~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~ 335 (342)
.++..|+++++.+++++..+++.++++++|++.++|.+++.+++.......+++++|.+++||+++++++.+++.+.++
T Consensus 246 ~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~g- 324 (527)
T TIGR02275 246 GVFYAGGCVVLAPDPSPTDCFPLIERHKVTVTALVPPAVALWMQAASKSRYDLSSLKLLQVGGAKFSEAAARRVPAVFG- 324 (527)
T ss_pred HHHhcCCeEEECCCCCHHHHHHHHHHhCCeEEEecHHHHHHHHhCccccCCCccceEEEEEcCCCCCHHHHHHHHHHhC-
Confidence 8999999999998899999999999999999999999999999887666678899999999999999999999999987
Q ss_pred CcccccC
Q 019348 336 ATIFQKI 342 (342)
Q Consensus 336 ~~l~~~Y 342 (342)
+++++.|
T Consensus 325 ~~~~~~Y 331 (527)
T TIGR02275 325 CQLQQVF 331 (527)
T ss_pred CeEEeee
Confidence 8998887
No 36
>PRK07638 acyl-CoA synthetase; Validated
Probab=100.00 E-value=1.8e-39 Score=300.14 Aligned_cols=286 Identities=19% Similarity=0.224 Sum_probs=236.6
Q ss_pred CCHHHHHhhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeE
Q 019348 27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA 106 (342)
Q Consensus 27 ~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~ 106 (342)
+++.+.|.+.++++||++|+.+. ++++||.||.+++.++|+.|.+.|. +|++|+|+++|+.+++++++||+++|+++
T Consensus 1 ~~~~~~~~~~a~~~p~~~a~~~~--~~~~Ty~~l~~~~~~~a~~L~~~~~-~~~~v~i~~~~~~~~~~~~la~~~~G~~~ 77 (487)
T PRK07638 1 MGITKEYKKHASLQPNKIAIKEN--DRVLTYKDWFESVCKVANWLNEKES-KNKTIAILLENRIEFLQLFAGAAMAGWTC 77 (487)
T ss_pred CChHHHHHHHHHhCCCCeEEecC--CcEeeHHHHHHHHHHHHHHHHHhCC-CCCEEEEEcCCCHHHHHHHHHHHHcCeEE
Confidence 46889999999999999999987 7899999999999999999999884 79999999999999999999999999999
Q ss_pred eccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhccCCCeEEecCCCccccccccccccccccHHHHHhccCCCCCCCC
Q 019348 107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPD 186 (342)
Q Consensus 107 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (342)
+|+++.++.+++.++++.+++++++++......+.......+.++ .+.+...... .....
T Consensus 78 v~l~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~--~~~~~ 137 (487)
T PRK07638 78 VPLDIKWKQDELKERLAISNADMIVTERYKLNDLPDEEGRVIEID------------------EWKRMIEKYL--PTYAP 137 (487)
T ss_pred EecCccCCHHHHHHHHHhCCCCEEEEecccccchhhccceEEEeh------------------hhhhhhhhcc--ccccc
Confidence 999999999999999999999999998765544432222222111 1111111111 11111
Q ss_pred CCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHHHHHHHHhhcCCeEEE
Q 019348 187 VSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVS 266 (342)
Q Consensus 187 ~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~ 266 (342)
.....+++++|+|||||||.||+|+++|.++...+.. ....+....+|+++...|++|..++ ..++.++..|+++++
T Consensus 138 ~~~~~~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~--~~~~~~~~~~d~~~~~~~l~~~~~l-~~~~~~l~~g~~~~~ 214 (487)
T PRK07638 138 IENVQNAPFYMGFTSGSTGKPKAFLRAQQSWLHSFDC--NVHDFHMKREDSVLIAGTLVHSLFL-YGAISTLYVGQTVHL 214 (487)
T ss_pred cccCCCCcEEEEeCCCCCCCCcEEEEecHHHHHHHHH--HHHhcCcCCCCEEEEeecchHHHHH-HHHHHHHccCcEEEE
Confidence 2223467899999999999999999999999887554 3444556788999999999999887 788999999999999
Q ss_pred ccCCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCCHHHHHHHHHhCCCCcccccC
Q 019348 267 MGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQKI 342 (342)
Q Consensus 267 ~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~Y 342 (342)
.+.+++..+++.++++++|++.++|++++.|.+... ...+.+.++++|++++.+..+++++.+|++++++.|
T Consensus 215 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~----~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~Y 286 (487)
T PRK07638 215 MRKFIPNQVLDKLETENISVMYTVPTMLESLYKENR----VIENKMKIISSGAKWEAEAKEKIKNIFPYAKLYEFY 286 (487)
T ss_pred cCCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCcC----cCCceeEEEEcCCCCCHHHHHHHHHHcCCCeEEEEe
Confidence 999999999999999999999999999999988732 234566678899999999999999999889999887
No 37
>PRK05852 acyl-CoA synthetase; Validated
Probab=100.00 E-value=2.4e-39 Score=302.37 Aligned_cols=312 Identities=17% Similarity=0.234 Sum_probs=245.1
Q ss_pred CCCCCCCCCCCCCCHHHHHhhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHH
Q 019348 15 LRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPI 94 (342)
Q Consensus 15 ~~~~~~~~~~~~~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~ 94 (342)
.-.+.+-+.. .++.+.|.+.++++|+++|+++.+..+.+||+||.++++++|+.|.+.|+++||+|+++++|+.++++
T Consensus 6 ~~~~~~~~~~--~~l~~~l~~~a~~~p~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~ 83 (534)
T PRK05852 6 GAAPMASDFG--PRIADLVEVAATRLPEAPALVVTADRIAISYRDLARLVDDLAGQLTRSGLLPGDRVALRMGSNAEFVV 83 (534)
T ss_pred cccchhhhhc--ccHHHHHHHHHHhCCCCcEEEecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcHHHHH
Confidence 3344444555 79999999999999999999987556789999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCeEeccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhccC---CCe-EEecCCCccccccccccccccc-
Q 019348 95 CFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN---LPA-VLLGSKDKVSSSGLISRSSKIV- 169 (342)
Q Consensus 95 ~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~- 169 (342)
+++||+++|+++++++|.++.+++.++++.++++++|++........... ... +.+.... .......
T Consensus 84 ~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~ 155 (534)
T PRK05852 84 ALLAASRADLVVVPLDPALPIAEQRVRSQAAGARVVLIDADGPHDRAEPTTRWWPLTVNVGGDS--------GPSGGTLS 155 (534)
T ss_pred HHHHHHHcCcEEeecCCCCCcHHHHHHHHhCCCCEEEEcCCCcchhccccccccceeeeecccc--------cccccccc
Confidence 99999999999999999999999999999999999999865332211110 011 1111000 0000000
Q ss_pred -cHHHHHhccCCCCCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHH
Q 019348 170 -SFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVF 248 (342)
Q Consensus 170 -~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~ 248 (342)
.+....... ..........++.++++|||||||.||+|.++|+++...+.. ....+....+|++++..|++|.+
T Consensus 156 ~~~~~~~~~~---~~~~~~~~~~~~~a~il~TSGTTG~PKgv~~~~~~~~~~~~~--~~~~~~~~~~d~~~~~~p~~~~~ 230 (534)
T PRK05852 156 VHLDAATEPT---PATSTPEGLRPDDAMIMFTGGTTGLPKMVPWTHANIASSVRA--IITGYRLSPRDATVAVMPLYHGH 230 (534)
T ss_pred cccccccCCC---ccccccCCCCCCceEEEeCCCCCCCCcEEEecHHHHHHHHHH--HHHHhCCCCcceEEEecCcchhH
Confidence 000000000 001111222467899999999999999999999999887655 33445567889999999999999
Q ss_pred HHHHHHHHHhhcCCeEEEcc--CCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCC--ccCCCCceEEEeecccCCHH
Q 019348 249 GLSVILYDQLQKGNCVVSMG--KFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVR--KFDISSLKLVGSGAAPLGKE 324 (342)
Q Consensus 249 g~~~~~~~~l~~G~~~v~~~--~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~--~~~l~~lr~~~~gG~~l~~~ 324 (342)
++...++.++..|++++++. .+++..+++.++++++|.++++|.+++.|.+..... ..+++++|.+.++|++++++
T Consensus 231 g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~~~~~ 310 (534)
T PRK05852 231 GLIAALLATLASGGAVLLPARGRFSAHTFWDDIKAVGATWYTAVPTIHQILLERAATEPSGRKPAALRFIRSCSAPLTAE 310 (534)
T ss_pred HHHHHHHHHHhcCCeEEeCCCcCcCHHHHHHHHHHcCCcEEEcChHHHHHHHhhcccccccccCCCeeEEEECCCCCCHH
Confidence 99778999999999999864 478999999999999999999999999998865432 34578999999999999999
Q ss_pred HHHHHHHhCCCCcccccC
Q 019348 325 LMEDCQKNIPGATIFQKI 342 (342)
Q Consensus 325 ~~~~~~~~~~~~~l~~~Y 342 (342)
+.+.+.+.|+ .++++.|
T Consensus 311 ~~~~~~~~~~-~~v~~~Y 327 (534)
T PRK05852 311 TAQALQTEFA-APVVCAF 327 (534)
T ss_pred HHHHHHHHhC-CChhhcc
Confidence 9999999997 8999887
No 38
>KOG1256 consensus Long-chain acyl-CoA synthetases (AMP-forming) [Lipid transport and metabolism]
Probab=100.00 E-value=7.8e-40 Score=294.42 Aligned_cols=321 Identities=20% Similarity=0.244 Sum_probs=256.6
Q ss_pred CCCCCCCCCCHHHHHhhhcccCCCceEEEeCC------CCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChH
Q 019348 19 LVLPSDPSFSMVHFLFRNSASYSSKLALIDAD------SDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHF 92 (342)
Q Consensus 19 ~~~~~~~~~~l~~~l~~~~~~~p~~~a~~~~~------~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~ 92 (342)
...+...+.|+++.|.+.+..+|+.+++-... .-+++||.|.++++.+++..|++.|+++++.|+|+..|++||
T Consensus 67 ~~~~~~~~~T~~~~f~~~~~~~~~~p~LG~r~~~~~~~~~~~~tY~q~~e~~~~~~~~l~~lG~~~~~~VGIy~~N~pEW 146 (691)
T KOG1256|consen 67 FSCPFDGPLTLYEGFRRSVEKSGNGPMLGTRVIVDGKGPYEWLTYKQVYERAENLGSGLRKLGVKEDSKVGIYAFNRPEW 146 (691)
T ss_pred CCCCCCCcccHHHHhhcchhccCCCCceeEEecccCCCCcEEEEHHHHHHHHHHHHHHHHHhCCCCCceEEEeccCChhh
Confidence 34444556899999999999999999987442 238999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCeEeccCCCCCHHHHHHHhhhcCceEEEEc-ccchhhhhccC-------CC-eEEecCCCccccccccc
Q 019348 93 PICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITV-PELWDKVKDLN-------LP-AVLLGSKDKVSSSGLIS 163 (342)
Q Consensus 93 ~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~-~~~~~~~~~~~-------~~-~~~~~~~~~~~~~~~~~ 163 (342)
++..+||...|.++|||....+++++.++++.+...++|+| ++....+.+.. ++ .+.++...+........
T Consensus 147 iis~~a~~~~~~v~VplYdTlg~ea~~~Ii~~~e~~iv~vd~~~k~~~ll~~~~~~~~~~LK~iI~~~~~~~~~~~~~~~ 226 (691)
T KOG1256|consen 147 IISEMACYAYSLVNVPLYDTLGAEAVHYIINHAEISIVFVDNAKKAEKLLEIKENDSLPSLKAIIQLDEPSDELKEKAEN 226 (691)
T ss_pred HHhHHHHHhcCCEEeecccCCCHHHHHHHHHhcceeEEEEeCHHHHHHHHhhcccccCccceeEEEecCCchhhhhhhhc
Confidence 99999999999999999999999999999999999999999 44444443321 22 33334333333333334
Q ss_pred cccccccHHHHHhccCCCCCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhcc----ccCCCeEEE
Q 019348 164 RSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQEL----VGELDHVVL 239 (342)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~----~~~~~d~~~ 239 (342)
....+.+|+++++.+.+..........+++.+.|.|||||||.||||++||+|+.+.++........ ....+|+++
T Consensus 227 ~gv~v~S~~e~~~lG~~~~~~~~~~p~p~d~atI~yTSGTTG~PKGVMLTH~Niv~~v~~~~~~~~~~~~~~~~~~dv~l 306 (691)
T KOG1256|consen 227 NGVEVYSWDEFEELGKKNQRKPRVPPKPDDLATICYTSGTTGNPKGVMLTHRNIVSDVAGIFFLSAAENAKATVGDDVYL 306 (691)
T ss_pred CCeEEEEHHHHHhhcccccCCCCCCCCccceEEEEEcCCCCCCCceEEEeccceeehhhhhhhhhhcccccccccCceEE
Confidence 4566899999999886422222257889999999999999999999999999999964421111111 122479999
Q ss_pred EccchhHHHHHHHHHHHHhhcCCeEEEccCCCHHHHHHHHHhccceEEEecHHHHHHHHcCCC-----------------
Q 019348 240 CVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSL----------------- 302 (342)
Q Consensus 240 ~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~----------------- 302 (342)
+++|+.|++.. ......+..|+++.+..+ |+..+.+.+++.+||.+.++|.+|+.+.+.-.
T Consensus 307 SyLPLAHi~er-~~~~~~~~~G~~IgF~~g-D~~~l~~dlk~lkPT~f~~VPRVl~riye~I~~~~~~sgflkr~l~~~A 384 (691)
T KOG1256|consen 307 SYLPLAHIFER-VVELYTFYIGAKIGFARG-DILKLTDDLKELKPTVFPGVPRVLERIYEGIQKQVQKSGFLKRKLFNFA 384 (691)
T ss_pred EeCcHHHHHHH-HHHHhHhhcccEEEEecC-ChHHHHHHHHHhCCcEEeccHhHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 99999999999 555566699999999985 88999999999999999999999976654220
Q ss_pred ----C-----CccC-------------------CCCceEEEeecccCCHHHHHHHHHhCCCCcccccC
Q 019348 303 ----V-----RKFD-------------------ISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQKI 342 (342)
Q Consensus 303 ----~-----~~~~-------------------l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~Y 342 (342)
. .... -.++|.+++|++|+++++.+.++..++ ++|+++|
T Consensus 385 ~~~k~~~~~~~G~~~~~~~~~D~lVf~KI~~~LGg~vr~~~sGaAPls~ev~~F~r~~~g-~~v~eGY 451 (691)
T KOG1256|consen 385 MAYKLEHRLMKGKSRSRDRFADKLVFHKIKQSLGGNVRLIISGAAPLSPEVLTFFRAALG-CRVLEGY 451 (691)
T ss_pred HHHHHHHHhhCCCCcccchHHHHHHHHHHHHHhcCceeEEEecCCCCCHHHHHHHHHhcC-ceeeecc
Confidence 0 0000 148999999999999999999999998 9999998
No 39
>PRK05620 long-chain-fatty-acid--CoA ligase; Validated
Probab=100.00 E-value=2.6e-39 Score=304.62 Aligned_cols=314 Identities=19% Similarity=0.277 Sum_probs=250.5
Q ss_pred CCCCHHHHHhhhcccCCCceEEEeCC-CCcceeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCCChHHHHHHHHHHh
Q 019348 25 PSFSMVHFLFRNSASYSSKLALIDAD-SDESLSFSQFKSIVIKVSHSFRH-LGITKKDVVLIFAPNSIHFPICFLGVIAI 102 (342)
Q Consensus 25 ~~~~l~~~l~~~~~~~p~~~a~~~~~-~~~~~Ty~~l~~~~~~la~~L~~-~g~~~g~~V~i~~~n~~~~~~~~lA~~~~ 102 (342)
.+.|+.+++...+..+|++.|+++.+ .++.+||+||.+++.++|++|.+ .|+++||+|+++++|+.+++++++||+++
T Consensus 8 ~~~~~~~~l~~~a~~~~~~~a~~~~~~~~~~~Ty~el~~~~~~la~~L~~~~g~~~gd~V~~~~~n~~e~~~~~lA~~~~ 87 (576)
T PRK05620 8 VPLSLTRILEYGSTVHGDTTVTTWGGAEQEQTTFAAIGARAAALAHALHDELGITGDQRVGSMMYNCAEHLEVLFAVACM 87 (576)
T ss_pred CCCcHHHHHHHHHHhCCCceEEEEcCCceEEEeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHHHHHhc
Confidence 34799999999999999999998653 35899999999999999999986 79999999999999999999999999999
Q ss_pred CCeEeccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhcc----C-CCeEEecCCCcccc-ccccccccccccHHHHHh
Q 019348 103 GAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDL----N-LPAVLLGSKDKVSS-SGLISRSSKIVSFHDLIE 176 (342)
Q Consensus 103 G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~----~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 176 (342)
|+++++++|..+.+++.++++.++++++++++.....+.+. . ...++......... ...........+|.++..
T Consensus 88 G~~~v~l~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 167 (576)
T PRK05620 88 GAVFNPLNKQLMNDQIVHIINHAEDEVIVADPRLAEQLGEILKECPCVRAVVFIGPSDADSAAAHMPEGIKVYSYEALLD 167 (576)
T ss_pred CCEEeecccccCHHHHHHHHhccCCcEEEEChhhHHHHHHHHhhCccccEEEEecCcccccchhccccccccccHHHHhh
Confidence 99999999999999999999999999999998766554332 1 12222211111100 000111223456777765
Q ss_pred ccCCCCCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHHHHHHH
Q 019348 177 LSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYD 256 (342)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~ 256 (342)
... .........++++++++|||||||.||||.++|+++............+....++++++.+|++|.+++ ...+.
T Consensus 168 ~~~--~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~-~~~~~ 244 (576)
T PRK05620 168 GRS--TVYDWPELDETTAAAICYSTGTTGAPKGVVYSHRSLYLQSLSLRTTDSLAVTHGESFLCCVPIYHVLSW-GVPLA 244 (576)
T ss_pred cCC--CcCCCCCCCccceeEEEECCCCCCCCceEEEEcHHHHHHHHHhhhhhhcCCCCCCeEEEeCChHHhhhh-HHHHH
Confidence 433 222233456789999999999999999999999998665333222334556788999999999999998 67788
Q ss_pred HhhcCCeEEEcc-CCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCCHHHHHHHHHhCCC
Q 019348 257 QLQKGNCVVSMG-KFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPG 335 (342)
Q Consensus 257 ~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~ 335 (342)
++..|+++++.+ .+++..+++.++++++|.+.++|.++..++........+..++|.+++||+++++.+.++|++.++
T Consensus 245 ~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~gG~~~~~~~~~~~~~~~~- 323 (576)
T PRK05620 245 AFMSGTPLVFPGPDLSAPTLAKIIATAMPRVAHGVPTLWIQLMVHYLKNPPERMSLQEIYVGGSAVPPILIKAWEERYG- 323 (576)
T ss_pred HHhcCceEEecCCCCCHHHHHHHHHHhcCceeeecCHHHHHHHHHhhccCcccCceeEEEEcCCCCCHHHHHHHHHHhC-
Confidence 999999999885 579999999999999999999999999887654333344568999999999999999999999987
Q ss_pred CcccccC
Q 019348 336 ATIFQKI 342 (342)
Q Consensus 336 ~~l~~~Y 342 (342)
+++++.|
T Consensus 324 ~~~~~~Y 330 (576)
T PRK05620 324 VDVVHVW 330 (576)
T ss_pred Cceeeec
Confidence 8898887
No 40
>PRK00174 acetyl-CoA synthetase; Provisional
Probab=100.00 E-value=4.8e-39 Score=306.10 Aligned_cols=307 Identities=24% Similarity=0.352 Sum_probs=238.9
Q ss_pred HHHHhhhcccCCCceEEEeCC----CCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCe
Q 019348 30 VHFLFRNSASYSSKLALIDAD----SDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAI 105 (342)
Q Consensus 30 ~~~l~~~~~~~p~~~a~~~~~----~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~ 105 (342)
.+.+.+.++++|+++|+++.+ ..+++||+||.+++.++|+.|++.|+++||+|+++++|+++++++++||+++|++
T Consensus 70 ~~~l~~~~~~~p~~~Al~~~~~~~~~~~~lTy~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav 149 (637)
T PRK00174 70 YNCLDRHLKTRGDKVAIIWEGDDPGDSRKITYRELHREVCRFANALKSLGVKKGDRVAIYMPMIPEAAVAMLACARIGAV 149 (637)
T ss_pred HHHHHHhhccCCCCeEEEEECCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCE
Confidence 456777788899999999643 2358999999999999999999999999999999999999999999999999999
Q ss_pred EeccCCCCCHHHHHHHhhhcCceEEEEcccchh---------hhh----cc-CCCeEEecCCCccccccccccccccccH
Q 019348 106 ASTANPVYTVSELSKQVKDSNPKLVITVPELWD---------KVK----DL-NLPAVLLGSKDKVSSSGLISRSSKIVSF 171 (342)
Q Consensus 106 ~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~---------~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (342)
++|++|..+.+++.++++.++++++|+++.... .+. .. ....+++...... ... ........+
T Consensus 150 ~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~ 226 (637)
T PRK00174 150 HSVVFGGFSAEALADRIIDAGAKLVITADEGVRGGKPIPLKANVDEALANCPSVEKVIVVRRTGG-DVD--WVEGRDLWW 226 (637)
T ss_pred EEecCCCCCHHHHHHHHHhcCCcEEEEcCccccCCcccchHHHHHHHHHhCCCccEEEEEcCCCC-CcC--cCCCCcccH
Confidence 999999999999999999999999999865421 111 11 1122222111000 000 001112335
Q ss_pred HHHHhccCCCCCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHH
Q 019348 172 HDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLS 251 (342)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~ 251 (342)
.++..... ..........+++++|+|||||||.||||+++|++++..+.. .....+....+|++++..|++|..+..
T Consensus 227 ~~~~~~~~--~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~-~~~~~~~~~~~d~~~~~~~~~~~~~~~ 303 (637)
T PRK00174 227 HELVAGAS--DECEPEPMDAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAAM-TMKYVFDYKDGDVYWCTADVGWVTGHS 303 (637)
T ss_pred HHHHhhcC--CCCCccccCCCCcEEEEECCCCCCCCceEEeCcchhHHHHHH-HHHhccCCCCCcEEEEcCCchHhhhhH
Confidence 55554322 222233456789999999999999999999999998754322 123334567789999999999999986
Q ss_pred HHHHHHhhcCCeEEEccC----CCHHHHHHHHHhccceEEEecHHHHHHHHcCCCC--CccCCCCceEEEeecccCCHHH
Q 019348 252 VILYDQLQKGNCVVSMGK----FDIEMALRAIEKYRVTVWWVVPPIILALAKNSLV--RKFDISSLKLVGSGAAPLGKEL 325 (342)
Q Consensus 252 ~~~~~~l~~G~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~--~~~~l~~lr~~~~gG~~l~~~~ 325 (342)
..++.+|..|+++++.+. .++..+++.++++++|++.++|++++.|++.... ...++++||.+++||+++++++
T Consensus 304 ~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~Ge~l~~~~ 383 (637)
T PRK00174 304 YIVYGPLANGATTLMFEGVPNYPDPGRFWEVIDKHKVTIFYTAPTAIRALMKEGDEHPKKYDLSSLRLLGSVGEPINPEA 383 (637)
T ss_pred HHHHHHHHcCCEEEEECCCCCCCChHHHHHHHHhcCCeEEeecHHHHHHHHhcCCcccccCCccceeEEEEeCCCCCHHH
Confidence 678999999999999753 4799999999999999999999999999886532 3456889999999999999999
Q ss_pred HHHHHHhCCC--CcccccC
Q 019348 326 MEDCQKNIPG--ATIFQKI 342 (342)
Q Consensus 326 ~~~~~~~~~~--~~l~~~Y 342 (342)
.+++.+.+++ +++++.|
T Consensus 384 ~~~~~~~~~~~~~~i~~~Y 402 (637)
T PRK00174 384 WEWYYKVVGGERCPIVDTW 402 (637)
T ss_pred HHHHHHHhCCCCCceEecc
Confidence 9999998863 6788877
No 41
>TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated. This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present.
Probab=100.00 E-value=4.7e-39 Score=299.43 Aligned_cols=301 Identities=24% Similarity=0.381 Sum_probs=247.5
Q ss_pred CHHHHHhhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeEe
Q 019348 28 SMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIAS 107 (342)
Q Consensus 28 ~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v 107 (342)
++.++|.+.++++|+++++.+. ++++||+||.+++.++|+.|++.|+++||+|+++++|+.+++++++||+.+|++++
T Consensus 1 ~~~~~~~~~~~~~p~~~a~~~~--~~~~ty~~l~~~v~~~a~~l~~~g~~~~~~V~i~~~n~~~~~~~~lA~~~~G~~~v 78 (515)
T TIGR03098 1 LLHHLLEDAAARLPDATALVHH--DRTLTYAALSERVLALASGLRGLGLARGERVAIYLDKRLETVTAMFGAALAGGVFV 78 (515)
T ss_pred CHHHHHHHHHHHCCCCeEEEEC--CceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCEEEE
Confidence 4688999999999999999987 77999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhccC-----C-CeEEecCCCccccccccccccccccHHHHHhccCCC
Q 019348 108 TANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN-----L-PAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSV 181 (342)
Q Consensus 108 ~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (342)
|+++..+.+++..+++.+++++++++++....+.... . ..+.+...... .........|+++.....
T Consensus 79 ~l~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~-- 151 (515)
T TIGR03098 79 PINPLLKAEQVAHILADCNVRLLVTSSERLDLLHPALPGCHDLRTLILVGEPAHA-----SEGGGESPSWPKLLALGD-- 151 (515)
T ss_pred eCCCCCCHHHHHHHHHcCCCeEEEEccchhhhhHhhhhcccccceEEEecCcccc-----cCCccccccHHHhhcccc--
Confidence 9999999999999999999999999877655433221 1 12222211100 001122334555543322
Q ss_pred CCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHHHHHHHHhhcC
Q 019348 182 TDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKG 261 (342)
Q Consensus 182 ~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G 261 (342)
.........++.++++|||||||.||+|.+||+++...+.. ....+....+|++++..|++|.+++ ..++.++..|
T Consensus 152 -~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~l~~~~~~--~~~~~~~~~~d~~l~~~p~~~~~~~-~~~~~~l~~G 227 (515)
T TIGR03098 152 -ADPPHPVIDSDMAAILYTSGSTGRPKGVVLSHRNLVAGAQS--VATYLENRPDDRLLAVLPLSFDYGF-NQLTTAFYVG 227 (515)
T ss_pred -ccccCCCCcCCeEEEEECCCCCCCCceEEEecHHHHHHHHH--HHHHhCCCcccEEEEECchhhHhHH-HHHHHHHHcC
Confidence 11222335578999999999999999999999999887554 3344456788999999999999998 7889999999
Q ss_pred CeEEEccCCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCCHHHHHHHHHhCCCCccccc
Q 019348 262 NCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQK 341 (342)
Q Consensus 262 ~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~ 341 (342)
+++++.+.+++..+++.++++++|++.++|.++..|..... ...+++++|.+++||+++++++.+++++.+++..+++.
T Consensus 228 ~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~-~~~~~~~l~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~ 306 (515)
T TIGR03098 228 ATVVLHDYLLPRDVLKALEKHGITGLAAVPPLWAQLAQLDW-PESAAPSLRYLTNSGGAMPRATLSRLRSFLPNARLFLM 306 (515)
T ss_pred CEEEEcCCCCHHHHHHHHHHcCCceEecChHHHHHHHhccc-CCCCccceEEEEecCCcCCHHHHHHHHHHCCCCeEeee
Confidence 99999999999999999999999999999999999987532 22467899999999999999999999999977889888
Q ss_pred C
Q 019348 342 I 342 (342)
Q Consensus 342 Y 342 (342)
|
T Consensus 307 Y 307 (515)
T TIGR03098 307 Y 307 (515)
T ss_pred e
Confidence 7
No 42
>PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional
Probab=100.00 E-value=4.8e-39 Score=297.07 Aligned_cols=284 Identities=25% Similarity=0.322 Sum_probs=240.4
Q ss_pred CCHHHHHhhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeE
Q 019348 27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA 106 (342)
Q Consensus 27 ~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~ 106 (342)
++++++|.+++.++||++|+.+. ++.+||+||.+++.++|+.|.+.|+++||+|+++++|+.+++++++||+++|+++
T Consensus 2 ~~~~~~l~~~a~~~p~~~a~~~~--~~~~Ty~el~~~~~~~a~~L~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~ 79 (483)
T PRK03640 2 ETMPNWLKQRAFLTPDRTAIEFE--EKKVTFMELHEAVVSVAGKLAALGVKKGDRVALLMKNGMEMILVIHALQQLGAVA 79 (483)
T ss_pred CcHHHHHHHHHHhCCCceEEEeC--CeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhCCcEE
Confidence 68999999999999999999987 7899999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhccCCCeEEecCCCccccccccccccccccHHHHHhccCCCCCCCC
Q 019348 107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPD 186 (342)
Q Consensus 107 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (342)
+|+++..+.+++.++++.++++.++++++.......... ..+.++...... .....
T Consensus 80 v~i~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~-~~~~~ 135 (483)
T PRK03640 80 VLLNTRLSREELLWQLDDAEVKCLITDDDFEAKLIPGIS-----------------------VKFAELMNGPKE-EAEIQ 135 (483)
T ss_pred EecCcCCCHHHHHHHHHhCCCCEEEEcchhhHHHhhhcc-----------------------ccHHHHhhcccc-cCCCC
Confidence 999999999999999999999999998765544322110 012222222110 11122
Q ss_pred CCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHHHHHHHHhhcCCeEEE
Q 019348 187 VSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVS 266 (342)
Q Consensus 187 ~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~ 266 (342)
....++++++++|||||||.||+|.+||.++...+.. ....+....+|++++.+|++|++++ ..++.++..|+++++
T Consensus 136 ~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~--~~~~~~~~~~d~~l~~~p~~~~~g~-~~~~~~l~~G~~~~~ 212 (483)
T PRK03640 136 EEFDLDEVATIMYTSGTTGKPKGVIQTYGNHWWSAVG--SALNLGLTEDDCWLAAVPIFHISGL-SILMRSVIYGMRVVL 212 (483)
T ss_pred CCCCCCCeEEEEeCCCcCCCCcEEEEecHHHHHHHHH--HHHhcCCCcCcEEEEecCHHHHHHH-HHHHHHHhcCCEEEe
Confidence 3446689999999999999999999999998877544 3334556789999999999999998 678999999999999
Q ss_pred ccCCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCCHHHHHHHHHhCCCCcccccC
Q 019348 267 MGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQKI 342 (342)
Q Consensus 267 ~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~Y 342 (342)
.+.+++..+++.++++++|++.++|+++..|....... ....++|.+++||+++++++.+.+++. ++++++.|
T Consensus 213 ~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~-~~~~~lr~~~~~g~~~~~~~~~~~~~~--~~~~~~~Y 285 (483)
T PRK03640 213 VEKFDAEKINKLLQTGGVTIISVVSTMLQRLLERLGEG-TYPSSFRCMLLGGGPAPKPLLEQCKEK--GIPVYQSY 285 (483)
T ss_pred cCCCCHHHHHHHHHHhCCcEEEeHHHHHHHHHhCcCcc-ccCCcceEEEEcCCCCCHHHHHHHHHh--CCCeeeee
Confidence 99999999999999999999999999999998765332 334689999999999999999999885 58998887
No 43
>COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]
Probab=100.00 E-value=8.5e-40 Score=297.82 Aligned_cols=307 Identities=26% Similarity=0.288 Sum_probs=231.0
Q ss_pred CCHHHHHhhhcccCCCceEEEeCC--CCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCC
Q 019348 27 FSMVHFLFRNSASYSSKLALIDAD--SDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGA 104 (342)
Q Consensus 27 ~~l~~~l~~~~~~~p~~~a~~~~~--~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~ 104 (342)
.++.+++.++++.+|+..++.... ....+||+|+.+++.++|..|...|+.+||+|+|+..|+++|+++.+||+.+|+
T Consensus 16 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ty~e~~~~v~~~a~gL~~lg~~~gdrvai~a~nr~eW~i~d~a~~~~g~ 95 (613)
T COG1022 16 HTLPKRLAERVKDRPDGVALMYKELGGWEAITYRELYERVRALASGLLSLGIPAGDRVAIFAANRPEWAIADLAILALGA 95 (613)
T ss_pred ccHHHHHHHHhhcCCcceeEeeecCCcceEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHHHHHHcCC
Confidence 689999999999999998988553 248999999999999999999999997799999999999999999999999999
Q ss_pred eEeccCCCCCHHHHHHHhhhcCceEEEEcccch-hhhhccCC--CeEEecC------CCccc-c-ccccc-cccccccHH
Q 019348 105 IASTANPVYTVSELSKQVKDSNPKLVITVPELW-DKVKDLNL--PAVLLGS------KDKVS-S-SGLIS-RSSKIVSFH 172 (342)
Q Consensus 105 ~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~-~~~~~~~~--~~~~~~~------~~~~~-~-~~~~~-~~~~~~~~~ 172 (342)
+.||+.+..+++++.++|++++++++|++.... +....... +.+.-.. ..... . ..... ...+...+
T Consensus 96 v~Vp~y~t~~~~~~~~iL~~se~~~i~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 174 (613)
T COG1022 96 VSVPIYSTSTPEQLAYILNESESKVIFVENQELLDLVLPVLEDCPKVVDLIVIIDLVREAVEAKALVLEVFPDEGISLF- 174 (613)
T ss_pred eEEecCCCCCHHHHHHHHhcCCceEEEecchHHHHHHHhhhccccchhhhhhhhhhhhhccchhhccccccccccchhh-
Confidence 999999999999999999999999999997443 33322211 0000000 00000 0 00000 00111111
Q ss_pred HHHhccCCCCCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHHH
Q 019348 173 DLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSV 252 (342)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~ 252 (342)
. ..... .........++|+|.|+|||||||.||||++||+|+++++..++.... ...++|++++++|+.|++..+.
T Consensus 175 ~-~~~~~--~~~~~~~~~~dDlatiiYTSGTTG~PKGVmLth~N~~~~v~~~~~~~~-~~~~~d~~LsfLPlaHi~Er~~ 250 (613)
T COG1022 175 L-IDSAG--LEGRIAPPKPDDLATIIYTSGTTGTPKGVMLTHRNLLAQVAGIDEVLP-PIGPGDRVLSFLPLAHIFERAF 250 (613)
T ss_pred h-hcccc--cccccCCCCccceEEEEEcCCCCCCCceEEEehHHHHHHHHHHHhhCC-CCCCCcEEEEeCcHHHHHHHHH
Confidence 1 11111 111224667899999999999999999999999999999877444433 3679999999999999999944
Q ss_pred HHHHHhhcCCeEEEccCCCHHHHHHHHHhccceEEEecHHHHHHHHcCCC--------C---------------------
Q 019348 253 ILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSL--------V--------------------- 303 (342)
Q Consensus 253 ~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~--------~--------------------- 303 (342)
.....+..|+++... .+++.+++.+++++||+++++|.+|+.+.+.-. .
T Consensus 251 ~~~~~~~~g~~~~~~--~~~~~~~~dl~~~rPt~m~~VPRvwE~i~~~I~~kv~~~~~~~~~if~~a~~~~~~~~~~~~~ 328 (613)
T COG1022 251 EGGLALYGGVTVLFK--EDPRTLLEDLKEVRPTVMIGVPRVWEKVYKGIMEKVAKAPAVRRKLFRWALKVAYKKISRALL 328 (613)
T ss_pred HHHHHhhcceEEEec--CCHHHHHHHHHHhCCeEEeechHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhc
Confidence 444555555554444 469999999999999999999999966544210 0
Q ss_pred -------------------CccCCCCceEEEeecccCCHHHHHHHHHhCCCCcccccC
Q 019348 304 -------------------RKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQKI 342 (342)
Q Consensus 304 -------------------~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~Y 342 (342)
...--.++|++++||+++++++...++.. +++++++|
T Consensus 329 ~~~~~~~~~~~d~LVf~Kir~~lGgri~~~~sGGa~l~~~~~~f~~~l--Gi~i~eGY 384 (613)
T COG1022 329 GGGPLSWLLVADRLVFRKIRDALGGRIRYALSGGAPLSPELLHFFRSL--GIPILEGY 384 (613)
T ss_pred ccCCcchhhhhhHHHHHHHHHHhCCcEEEEEecCCcCCHHHHHHHHHc--CCCeEEEe
Confidence 00011489999999999999999999998 79999998
No 44
>PRK12583 acyl-CoA synthetase; Provisional
Probab=100.00 E-value=8.7e-39 Score=300.44 Aligned_cols=305 Identities=24% Similarity=0.347 Sum_probs=247.7
Q ss_pred CCHHHHHhhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeE
Q 019348 27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA 106 (342)
Q Consensus 27 ~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~ 106 (342)
.++.+.|.+.++++|+++|+++.+.++.+||+||.+++.++|++|.+.|+++||+|+++++|+++++++++||+++|+++
T Consensus 18 ~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~~a~~~~G~~~ 97 (558)
T PRK12583 18 QTIGDAFDATVARFPDREALVVRHQALRYTWRQLADAVDRLARGLLALGVQPGDRVGIWAPNCAEWLLTQFATARIGAIL 97 (558)
T ss_pred CcHHHHHHHHHHHCCCCeEEEecCCCcEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHHHHHHhhCCEE
Confidence 58999999999999999999987667899999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCHHHHHHHhhhcCceEEEEcccchh-----hhhccC---------------C---CeEEecCCCccccccccc
Q 019348 107 STANPVYTVSELSKQVKDSNPKLVITVPELWD-----KVKDLN---------------L---PAVLLGSKDKVSSSGLIS 163 (342)
Q Consensus 107 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~-----~~~~~~---------------~---~~~~~~~~~~~~~~~~~~ 163 (342)
+++++..+.+++.++++.++++++++++.... .+.... . ..+..... .
T Consensus 98 v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~ 168 (558)
T PRK12583 98 VNINPAYRASELEYALGQSGVRWVICADAFKTSDYHAMLQELLPGLAEGQPGALACERLPELRGVVSLAP---------A 168 (558)
T ss_pred EecCCCCCHHHHHHHHHhcCCcEEEEeccccccchhHHHHHHhhhhccccccccccccCCcceEEEEecC---------C
Confidence 99999999999999999999999999764321 111100 0 00000000 0
Q ss_pred cccccccHHHHHhccCCC----CCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEE
Q 019348 164 RSSKIVSFHDLIELSGSV----TDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVL 239 (342)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~ 239 (342)
.......|.+........ .........+++.++++|||||||.||+|.++|+++...+.. ....+....+|+++
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~PK~v~~s~~~l~~~~~~--~~~~~~~~~~d~~~ 246 (558)
T PRK12583 169 PPPGFLAWHELQARGETVSREALAERQASLDRDDPINIQYTSGTTGFPKGATLSHHNILNNGYF--VAESLGLTEHDRLC 246 (558)
T ss_pred CCccccchHhhhhcccccccccccccccccCCCCcEEEEECCCCCCCCceEEeeHHHHHHHHHH--HHHHhCCCCCCeEE
Confidence 111233444443222100 001112345678999999999999999999999999887554 34445567889999
Q ss_pred EccchhHHHHHHHHHHHHhhcCCeEEEc-cCCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeec
Q 019348 240 CVLPMFHVFGLSVILYDQLQKGNCVVSM-GKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGA 318 (342)
Q Consensus 240 ~~~p~~~~~g~~~~~~~~l~~G~~~v~~-~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG 318 (342)
+..|++|.+|.+..++.++..|++++++ ..+++..+++.++++++|+++++|.++..++........+++++|.+++||
T Consensus 247 ~~~p~~~~~g~~~~~~~~l~~g~~v~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~lr~i~~~G 326 (558)
T PRK12583 247 VPVPLYHCFGMVLANLGCMTVGACLVYPNEAFDPLATLQAVEEERCTALYGVPTMFIAELDHPQRGNFDLSSLRTGIMAG 326 (558)
T ss_pred EecCchhhhhHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHcCCeEEeccHHHHHHHHccccccCCCchhheEEEecC
Confidence 9999999999988899999999999976 457899999999999999999999999998887766667789999999999
Q ss_pred ccCCHHHHHHHHHhCCCCcccccC
Q 019348 319 APLGKELMEDCQKNIPGATIFQKI 342 (342)
Q Consensus 319 ~~l~~~~~~~~~~~~~~~~l~~~Y 342 (342)
+++++++.+++.+.+++..+++.|
T Consensus 327 ~~~~~~~~~~~~~~~~~~~i~~~Y 350 (558)
T PRK12583 327 APCPIEVMRRVMDEMHMAEVQIAY 350 (558)
T ss_pred CCCCHHHHHHHHHHcCCcceeccc
Confidence 999999999999999866788877
No 45
>PLN02387 long-chain-fatty-acid-CoA ligase family protein
Probab=100.00 E-value=1.9e-39 Score=310.08 Aligned_cols=312 Identities=20% Similarity=0.220 Sum_probs=236.4
Q ss_pred CCHHHHHhhhcccCCCceEEEeC----------CCC-----------cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Q 019348 27 FSMVHFLFRNSASYSSKLALIDA----------DSD-----------ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIF 85 (342)
Q Consensus 27 ~~l~~~l~~~~~~~p~~~a~~~~----------~~~-----------~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~ 85 (342)
.|+.++|.+.++.+||++|+... .++ +++||+|+.++++++|..|.+.|+++||+|+|+
T Consensus 58 ~t~~~l~~~~~~~~pd~~al~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~lG~~~gd~Vai~ 137 (696)
T PLN02387 58 TTLAALFEQSCKKYSDKRLLGTRKLISREFETSSDGRKFEKLHLGEYEWITYGQVFERVCNFASGLVALGHNKEERVAIF 137 (696)
T ss_pred CCHHHHHHHHHHHCCCCceEEEecccccccccccCCcccccccCCCcEEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEE
Confidence 69999999999999999999431 012 348999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHhCCeEeccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhccC-----CC-eEEecCCCccccc
Q 019348 86 APNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN-----LP-AVLLGSKDKVSSS 159 (342)
Q Consensus 86 ~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-----~~-~~~~~~~~~~~~~ 159 (342)
++|+++|+++++||+++|++++|+++.++.+++.+++++++++++|++.+....+.... .. ++.++........
T Consensus 138 ~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~li~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~ 217 (696)
T PLN02387 138 ADTRAEWLIALQGCFRQNITVVTIYASLGEEALCHSLNETEVTTVICDSKQLKKLIDISSQLETVKRVIYMDDEGVDSDS 217 (696)
T ss_pred cCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHccCCCEEEECHHHHHHHHHHhhccCCceEEEEECCCCchhhh
Confidence 99999999999999999999999999999999999999999999999977665544331 22 3333321110000
Q ss_pred c-ccccccccccHHHHHhccCCCCCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEE
Q 019348 160 G-LISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVV 238 (342)
Q Consensus 160 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~ 238 (342)
. ..........|.++...+.. .........++++++|+|||||||.||||++||+++...+...... ......+|++
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~dd~a~I~yTSGTTG~PKGV~lth~~l~~~~~~~~~~-~~~~~~~d~~ 295 (696)
T PLN02387 218 SLSGSSNWTVSSFSEVEKLGKE-NPVDPDLPSPNDIAVIMYTSGSTGLPKGVMMTHGNIVATVAGVMTV-VPKLGKNDVY 295 (696)
T ss_pred hhhccCCcEEEEHHHHHHhhcc-CCCCCCCCCccceEEEEecCCCCCCCCEEEEEcHHHHHHHHHHHhh-cCCCCCCCEE
Confidence 0 00111223456766654431 1112233467999999999999999999999999999875543211 1235688999
Q ss_pred EEccchhHHHHHHHHHHHHhhcCCeEEEccCCC--------HHHHHHHHHhccceEEEecHHHHHHHHcCCCCC------
Q 019348 239 LCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFD--------IEMALRAIEKYRVTVWWVVPPIILALAKNSLVR------ 304 (342)
Q Consensus 239 ~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~--------~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~------ 304 (342)
++++|++|.+++ ...+..+..|+++.+..... +..++..++++++|++.++|.+++.+.+.....
T Consensus 296 l~~lPl~Hi~~~-~~~~~~~~~g~~i~~g~~~~l~~~~~~~~~~~~~~i~~~~pT~~~~vP~~l~~l~~~~~~~~~~~~~ 374 (696)
T PLN02387 296 LAYLPLAHILEL-AAESVMAAVGAAIGYGSPLTLTDTSNKIKKGTKGDASALKPTLMTAVPAILDRVRDGVRKKVDAKGG 374 (696)
T ss_pred EEECcHHHHHHH-HHHHHHHHhCCEEEECChhhhcccccccccCchhhHHHhCCcEEEehhHHHHHHHHHHHHHHhcccH
Confidence 999999999998 55556678888887764321 234567899999999999999999886532100
Q ss_pred ------------------c----------------------c-CCCCceEEEeecccCCHHHHHHHHHhCCCCcccccC
Q 019348 305 ------------------K----------------------F-DISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQKI 342 (342)
Q Consensus 305 ------------------~----------------------~-~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~Y 342 (342)
. . ..+++|.+++||+++++++.+.++..++ ++++++|
T Consensus 375 ~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~i~~GGapl~~~~~~~~~~~~g-~~v~~~Y 452 (696)
T PLN02387 375 LAKKLFDIAYKRRLAAIEGSWFGAWGLEKLLWDALVFKKIRAVLGGRIRFMLSGGAPLSGDTQRFINICLG-APIGQGY 452 (696)
T ss_pred HHHHHHHHHHHHHHHHhccCCcccccccchhhHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHHHcC-CCeeEee
Confidence 0 0 0158999999999999999888887787 8999988
No 46
>PRK06839 acyl-CoA synthetase; Validated
Probab=100.00 E-value=2.1e-39 Score=300.45 Aligned_cols=287 Identities=24% Similarity=0.341 Sum_probs=244.2
Q ss_pred CHHHHHhhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCCChHHHHHHHHHHhCCeE
Q 019348 28 SMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRH-LGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA 106 (342)
Q Consensus 28 ~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~-~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~ 106 (342)
.+.+++.+.++.+||++|+++. ++.+||+||.++++++|+.|++ .|+++|++|+++++|+++++++++||+++|+++
T Consensus 3 ~~~~~~~~~a~~~p~~~a~~~~--~~~~ty~~l~~~~~~la~~L~~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~ 80 (496)
T PRK06839 3 GIAYWIEKRAYLHPDRIAIITE--EEEMTYKQLHEYVSKVAAYLIYELNVKKGERIAILSQNSLEYIVLLFAIAKVECIA 80 (496)
T ss_pred cHHHHHHHHHHHCCCCeEEEEC--CceEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEE
Confidence 6889999999999999999987 8999999999999999999975 799999999999999999999999999999999
Q ss_pred eccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhccCCC-----eEEecCCCccccccccccccccccHHHHHhccCCC
Q 019348 107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLP-----AVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSV 181 (342)
Q Consensus 107 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (342)
+|+++..+.+++..+++.+++++++++++......+.... .+.+. ++.+......
T Consensus 81 ~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~-- 140 (496)
T PRK06839 81 VPLNIRLTENELIFQLKDSGTTVLFVEKTFQNMALSMQKVSYVQRVISIT------------------SLKEIEDRKI-- 140 (496)
T ss_pred EecCcccCHHHHHHHHHhcCceEEEEcHHHHHHHHHhhhccCcceEEEec------------------chHhhhccCC--
Confidence 9999999999999999999999999998776655443211 11111 1222222111
Q ss_pred CCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHHHHHHHHhhcC
Q 019348 182 TDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKG 261 (342)
Q Consensus 182 ~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G 261 (342)
.......++++++|+|||||||.||+|.++|.++...... ....+....+|++++..|++|.+|+...++.++..|
T Consensus 141 --~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~--~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~g 216 (496)
T PRK06839 141 --DNFVEKNESASFIICYTSGTTGKPKGAVLTQENMFWNALN--NTFAIDLTMHDRSIVLLPLFHIGGIGLFAFPTLFAG 216 (496)
T ss_pred --CCCCCCCCCCcEEEEeCCCCCCCCcEEEEEhHHHHHHHHH--HHHHcCCCCCCeEEEeeCCcchhhHHHHHHHHHhcC
Confidence 1122345688999999999999999999999998765333 334445678899999999999999877778999999
Q ss_pred CeEEEccCCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCCHHHHHHHHHhCCCCccccc
Q 019348 262 NCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQK 341 (342)
Q Consensus 262 ~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~ 341 (342)
+++++++.+++..+++.++++++|++.++|.+++.+++.......+++++|.+++||+++++++.+.+++. ++++++.
T Consensus 217 ~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~--g~~~~~~ 294 (496)
T PRK06839 217 GVIIVPRKFEPTKALSMIEKHKVTVVMGVPTIHQALINCSKFETTNLQSVRWFYNGGAPCPEELMREFIDR--GFLFGQG 294 (496)
T ss_pred cEEEEccCCCHHHHHHHHHhhCCeEEEehHHHHHHHHhCcccccCCCcccceEEECCCCCCHHHHHHHHHh--CCeeEee
Confidence 99999999999999999999999999999999999999876667788999999999999999999999997 5888888
Q ss_pred C
Q 019348 342 I 342 (342)
Q Consensus 342 Y 342 (342)
|
T Consensus 295 Y 295 (496)
T PRK06839 295 F 295 (496)
T ss_pred c
Confidence 7
No 47
>PRK06018 putative acyl-CoA synthetase; Provisional
Probab=100.00 E-value=6.2e-39 Score=300.09 Aligned_cols=313 Identities=19% Similarity=0.267 Sum_probs=248.3
Q ss_pred CCCCCCCHHHHHhhhcccCCCceEEEeC--CCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHH
Q 019348 22 PSDPSFSMVHFLFRNSASYSSKLALIDA--DSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGV 99 (342)
Q Consensus 22 ~~~~~~~l~~~l~~~~~~~p~~~a~~~~--~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~ 99 (342)
+...++++.++|...++++||++++++. +..+++||+||.++++++|++|.+.|+++||+|+++++|+.+++++++||
T Consensus 5 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~Ty~el~~~v~~la~~L~~~g~~~gd~v~i~~~~~~~~~~~~la~ 84 (542)
T PRK06018 5 MQDWPLLCHRIIDHAARIHGNREVVTRSVEGPIVRTTYAQIHDRALKVSQALDRDGIKLGDRVATIAWNTWRHLEAWYGI 84 (542)
T ss_pred hhcCCCCHHHHHHHHHHhCCCceEEEeeccCCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHH
Confidence 3444589999999999999999999853 22478999999999999999999999999999999999999999999999
Q ss_pred HHhCCeEeccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhcc-----CCCeEEecCCCccccccccccccccccHHHH
Q 019348 100 IAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDL-----NLPAVLLGSKDKVSSSGLISRSSKIVSFHDL 174 (342)
Q Consensus 100 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (342)
+++|++++|++|..+.+++.++++.+++++++++.+..+.+.+. ....+....+.... ..........+.++
T Consensus 85 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 161 (542)
T PRK06018 85 MGIGAICHTVNPRLFPEQIAWIINHAEDRVVITDLTFVPILEKIADKLPSVERYVVLTDAAHM---PQTTLKNAVAYEEW 161 (542)
T ss_pred HhcCeEeeccccccCHHHHHHHHhccCCCEEEEccccHHHHHHHHhhCCCccEEEEecccccc---cccCccccccHHHH
Confidence 99999999999999999999999999999999998766554332 11222221111000 00111233355555
Q ss_pred HhccCCCCCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHHHHH
Q 019348 175 IELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVIL 254 (342)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~ 254 (342)
+.... ..........++.++|+|||||||.||+|.+||.+.+...........+....+|+++...|++|.+++ ...
T Consensus 162 ~~~~~--~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~h~~~~-~~~ 238 (542)
T PRK06018 162 IAEAD--GDFAWKTFDENTAAGMCYTSGTTGDPKGVLYSHRSNVLHALMANNGDALGTSAADTMLPVVPLFHANSW-GIA 238 (542)
T ss_pred hccCC--cccCcccCCccceeeEEecCCCCCCCcEEEEechhHHHHHHHHhhhhhcCCCCCCEEEEecCHHHHhhh-HHH
Confidence 54332 222223446678999999999999999999999975322111112334456788999999999999998 566
Q ss_pred HHHhhcCCeEEEcc-CCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCCHHHHHHHHHhC
Q 019348 255 YDQLQKGNCVVSMG-KFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNI 333 (342)
Q Consensus 255 ~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~ 333 (342)
+.++..|+++++.. .+++..+++.++++++|.+.++|+++..|.+.......+++++|.+++||+++++.+.++|++ +
T Consensus 239 ~~~~~~g~~~v~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~~G~~l~~~~~~~~~~-~ 317 (542)
T PRK06018 239 FSAPSMGTKLVMPGAKLDGASVYELLDTEKVTFTAGVPTVWLMLLQYMEKEGLKLPHLKMVVCGGSAMPRSMIKAFED-M 317 (542)
T ss_pred HhhhhcCceEEccCcCCCHHHHHHHHHhcCCceeecCcHHHHHHHhcccccCCCcccceEEEEcCCCCCHHHHHHHHH-h
Confidence 78899999999874 578999999999999999999999999998877655667899999999999999999999999 7
Q ss_pred CCCcccccC
Q 019348 334 PGATIFQKI 342 (342)
Q Consensus 334 ~~~~l~~~Y 342 (342)
+ +++++.|
T Consensus 318 ~-~~~~~~Y 325 (542)
T PRK06018 318 G-VEVRHAW 325 (542)
T ss_pred C-CCeEeee
Confidence 5 8999887
No 48
>PRK06145 acyl-CoA synthetase; Validated
Probab=100.00 E-value=1.3e-38 Score=295.24 Aligned_cols=296 Identities=22% Similarity=0.280 Sum_probs=246.2
Q ss_pred CCHHHHHhhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeE
Q 019348 27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA 106 (342)
Q Consensus 27 ~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~ 106 (342)
+++.+.|.+.++++|+++|+++. ++.+||.||.+++.++|..|.+.|+++|++|+++++|+.+++++++||+++|+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~a~~~~--~~~~ty~el~~~v~~~a~~L~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~ 79 (497)
T PRK06145 2 FNLSASIAFHARRTPDRAALVYR--DQEISYAEFHQRILQAAGMLHARGIGQGDVVALLMKNSAAFLELAFAASYLGAVF 79 (497)
T ss_pred ccHHHHHHHHHHHCCCceEEEEC--CcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEE
Confidence 57899999999999999999987 7899999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhccCCCeEEecCCCccccccccccccccccHHHHHhccCCCCCCCC
Q 019348 107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPD 186 (342)
Q Consensus 107 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (342)
+|+++..+.+++.++++.+++++++++++....... ....+.++.... ..+..+..... .....
T Consensus 80 v~l~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~-------------~~~~~~~~~~~--~~~~~ 143 (497)
T PRK06145 80 LPINYRLAADEVAYILGDAGAKLLLVDEEFDAIVAL-ETPKIVIDAAAQ-------------ADSRRLAQGGL--EIPPQ 143 (497)
T ss_pred EecccccCHHHHHHHHHhcCCcEEEEccchhhhhhc-ccceEEecCccc-------------chhHHHhccCC--CCCCC
Confidence 999999999999999999999999998776544321 112222221100 00111111110 11112
Q ss_pred CCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHHHHHHHHhhcCCeEEE
Q 019348 187 VSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVS 266 (342)
Q Consensus 187 ~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~ 266 (342)
....++++++++|||||||.||+|++||+++...+.. ....+....+++++...|++|.+++....+.++..|+++++
T Consensus 144 ~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~--~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~g~~~~~ 221 (497)
T PRK06145 144 AAVAPTDLVRLMYTSGTTDRPKGVMHSYGNLHWKSID--HVIALGLTASERLLVVGPLYHVGAFDLPGIAVLWVGGTLRI 221 (497)
T ss_pred CCCCccceEEEEeCCCCCCCCcEEEEecHHHHHHHHH--HHHhhCCCCCcEEEEecCchhHhHHHHHHHHHHhccCEEEE
Confidence 2346789999999999999999999999999876433 33344567889999999999999986667888999999999
Q ss_pred ccCCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCCHHHHHHHHHhCCCCcccccC
Q 019348 267 MGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQKI 342 (342)
Q Consensus 267 ~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~Y 342 (342)
.+.+++..+++.++++++|.+.++|+++..++........+++++|.+++||++++.++.+++++.|++.++++.|
T Consensus 222 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~ll~~~~~~~~~~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~v~~~Y 297 (497)
T PRK06145 222 HREFDPEAVLAAIERHRLTCAWMAPVMLSRVLTVPDRDRFDLDSLAWCIGGGEKTPESRIRDFTRVFTRARYIDAY 297 (497)
T ss_pred CCcCCHHHHHHHHHHhCCeEEEehHHHHHHHHcCCCccccccccceEEEecCCCCCHHHHHHHHHHcCCCceEEee
Confidence 9999999999999999999999999999999988766666788999999999999999999999999878898887
No 49
>PRK12582 acyl-CoA synthetase; Provisional
Probab=100.00 E-value=4.8e-39 Score=305.10 Aligned_cols=306 Identities=21% Similarity=0.255 Sum_probs=233.6
Q ss_pred CCCHHHHHhhhcccCCCceEEEeCCC----CcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHH
Q 019348 26 SFSMVHFLFRNSASYSSKLALIDADS----DESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIA 101 (342)
Q Consensus 26 ~~~l~~~l~~~~~~~p~~~a~~~~~~----~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~ 101 (342)
+.++.+.|.+.++++||++|+++.+. .+.+||+||.++++++|++|.+.|+++||+|+++++|+++++++++||++
T Consensus 48 ~~~l~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~ 127 (624)
T PRK12582 48 PRSIPHLLAKWAAEAPDRPWLAQREPGHGQWRKVTYGEAKRAVDALAQALLDLGLDPGRPVMILSGNSIEHALMTLAAMQ 127 (624)
T ss_pred ccCHHHHHHHHHHHCCCchheecccCCCCceEEeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHHHHHH
Confidence 36899999999999999999987531 16899999999999999999999999999999999999999999999999
Q ss_pred hCCeEeccCCCCCH-----HHHHHHhhhcCceEEEEcccc--hhhhhcc---CCCeEEecCCCccccccccccccccccH
Q 019348 102 IGAIASTANPVYTV-----SELSKQVKDSNPKLVITVPEL--WDKVKDL---NLPAVLLGSKDKVSSSGLISRSSKIVSF 171 (342)
Q Consensus 102 ~G~~~v~l~~~~~~-----~~l~~~l~~~~~~~vi~~~~~--~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (342)
+|++++|++|.++. +++.++++.++++++|+++.. ...+... ....+.++.. ........+
T Consensus 128 ~G~v~vpl~p~~~~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~i~~~~~---------~~~~~~~~~ 198 (624)
T PRK12582 128 AGVPAAPVSPAYSLMSHDHAKLKHLFDLVKPRVVFAQSGAPFARALAALDLLDVTVVHVTGP---------GEGIASIAF 198 (624)
T ss_pred cCCeEeeccCccccccCCHHHHHHHHHhcCCcEEEecCHHHHHHHHHhhhhcCceEEEEcCC---------CcccccccH
Confidence 99999999999875 899999999999999998642 1111111 2223322211 001122344
Q ss_pred HHHHhccCCCC-CCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccC---CCeEEEEccchhHH
Q 019348 172 HDLIELSGSVT-DIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGE---LDHVVLCVLPMFHV 247 (342)
Q Consensus 172 ~~~~~~~~~~~-~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~---~~d~~~~~~p~~~~ 247 (342)
.++........ ........+++.++|+|||||||.||||++||+++....... ....... ..+++++++|++|.
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~--~~~~~~~~~~~~~~~l~~lPl~h~ 276 (624)
T PRK12582 199 ADLAATPPTAAVAAAIAAITPDTVAKYLFTSGSTGMPKAVINTQRMMCANIAMQ--EQLRPREPDPPPPVSLDWMPWNHT 276 (624)
T ss_pred HHHhhcCCcchhhhhhccCCCCceEEEEEcCCCCCCCceEEeeHHHHHHHHHHH--HHhccccCCCCCceEEEechHHHH
Confidence 55443221000 001123457899999999999999999999999998875442 2222222 25899999999999
Q ss_pred HHHHHHHHHHhhcCCeEEEccC-CCH---HHHHHHHHhccceEEEecHHHHHHHHcCCCC----CccCCCCceEEEeecc
Q 019348 248 FGLSVILYDQLQKGNCVVSMGK-FDI---EMALRAIEKYRVTVWWVVPPIILALAKNSLV----RKFDISSLKLVGSGAA 319 (342)
Q Consensus 248 ~g~~~~~~~~l~~G~~~v~~~~-~~~---~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~----~~~~l~~lr~~~~gG~ 319 (342)
+|+...++.++..|+++++.+. +++ ..+++.++++++|+++++|.+++.|.+.... ...++++||.+++||+
T Consensus 277 ~g~~~~~~~~l~~G~tvvl~~~~~~~~~~~~~~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~slr~i~~gGa 356 (624)
T PRK12582 277 MGGNANFNGLLWGGGTLYIDDGKPLPGMFEETIRNLREISPTVYGNVPAGYAMLAEAMEKDDALRRSFFKNLRLMAYGGA 356 (624)
T ss_pred HhHHHHHHHHHhCceEEEEcCCCcccchHHHHHHHHHhcCCeEEeccCHHHHHHHHHHhhCHHHHHHHhhheeEEEecCC
Confidence 9986677889999999999763 333 4567778899999999999999988764322 2235789999999999
Q ss_pred cCCHHHHHHHHHhC----C-CCcccccC
Q 019348 320 PLGKELMEDCQKNI----P-GATIFQKI 342 (342)
Q Consensus 320 ~l~~~~~~~~~~~~----~-~~~l~~~Y 342 (342)
++++++.++|++.+ + +++++++|
T Consensus 357 ~l~~~~~~~~~~~~~~~~g~~~~l~~~Y 384 (624)
T PRK12582 357 TLSDDLYERMQALAVRTTGHRIPFYTGY 384 (624)
T ss_pred CCCHHHHHHHHHHHHhhcCCCceEEecc
Confidence 99999999999863 3 36788887
No 50
>PRK06087 short chain acyl-CoA synthetase; Reviewed
Probab=100.00 E-value=1.2e-38 Score=298.61 Aligned_cols=300 Identities=21% Similarity=0.316 Sum_probs=243.6
Q ss_pred CCHHHHHhhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeE
Q 019348 27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA 106 (342)
Q Consensus 27 ~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~ 106 (342)
.++.+++.+.++++||++|+++.+ ++++||+||.+++.++|++|++.|+++||+|+++++|+.+++++++||+++|+++
T Consensus 23 ~~l~~~~~~~~~~~pd~~a~~~~~-~~~~Ty~~l~~~v~~la~~l~~~G~~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~ 101 (547)
T PRK06087 23 ASLADYWQQTARAMPDKIAVVDNH-GASYTYSALDHAASRLANWLLAKGIEPGDRVAFQLPGWCEFTIIYLACLKVGAVS 101 (547)
T ss_pred CCHHHHHHHHHHHCCCceEEEcCC-CCEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEE
Confidence 579999999999999999999763 4799999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCHHHHHHHhhhcCceEEEEcccch-----hhhhc----cC-C-CeEEecCCCccccccccccccccccHHHHH
Q 019348 107 STANPVYTVSELSKQVKDSNPKLVITVPELW-----DKVKD----LN-L-PAVLLGSKDKVSSSGLISRSSKIVSFHDLI 175 (342)
Q Consensus 107 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~----~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (342)
+|++|..+.+++.++++.++++++++++... +.+.. .. . ..+.++... .......+.++.
T Consensus 102 v~l~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~ 172 (547)
T PRK06087 102 VPLLPSWREAELVWVLNKCQAKMFFAPTLFKQTRPVDLILPLQNQLPQLQQIVGVDKLA---------PATSSLSLSQII 172 (547)
T ss_pred eccchhcCHHHHHHHHHhcCCeEEEEecccccccHHHHHHHHHhhCCCCcEEEEeCCcC---------CCcCccCHHHHh
Confidence 9999999999999999999999999975321 11111 11 1 122222110 011122444444
Q ss_pred hccCCCCCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHHHHHH
Q 019348 176 ELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILY 255 (342)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~ 255 (342)
.... ..........+++++|+|||||||.||+|.++|.++...... .........+|++++..|++|.+|+...++
T Consensus 173 ~~~~--~~~~~~~~~~~d~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~--~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~ 248 (547)
T PRK06087 173 ADYE--PLTTAITTHGDELAAVLFTSGTEGLPKGVMLTHNNILASERA--YCARLNLTWQDVFMMPAPLGHATGFLHGVT 248 (547)
T ss_pred ccCC--cccCCCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHH--HHHhcCCCCCCeEEEecchHHHHHHHHHHH
Confidence 3322 111222345789999999999999999999999999877544 334445678899999999999999877899
Q ss_pred HHhhcCCeEEEccCCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCCHHHHHHHHHhCCC
Q 019348 256 DQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPG 335 (342)
Q Consensus 256 ~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~ 335 (342)
.++..|+++++.+.+++..+++.++++++|+++.+|..+..++........+++++|.+++||+++++++.+.+.+. +
T Consensus 249 ~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~~~~~~~~~~~~~--~ 326 (547)
T PRK06087 249 APFLIGARSVLLDIFTPDACLALLEQQRCTCMLGATPFIYDLLNLLEKQPADLSALRFFLCGGTTIPKKVARECQQR--G 326 (547)
T ss_pred HHHhcCCEEEecCCCCHHHHHHHHHHcCCCEEeccHHHHHHHHhccccCCCCCCCeEEEEEcCCCCCHHHHHHHHHc--C
Confidence 99999999999999999999999999999999988877777776655555678899999999999999999998875 5
Q ss_pred CcccccC
Q 019348 336 ATIFQKI 342 (342)
Q Consensus 336 ~~l~~~Y 342 (342)
+++++.|
T Consensus 327 ~~l~~~Y 333 (547)
T PRK06087 327 IKLLSVY 333 (547)
T ss_pred CcEEEEe
Confidence 8999887
No 51
>PRK07008 long-chain-fatty-acid--CoA ligase; Validated
Probab=100.00 E-value=1.2e-38 Score=297.95 Aligned_cols=307 Identities=18% Similarity=0.234 Sum_probs=248.7
Q ss_pred CCHHHHHhhhcccCCCceEEEeCC--CCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCC
Q 019348 27 FSMVHFLFRNSASYSSKLALIDAD--SDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGA 104 (342)
Q Consensus 27 ~~l~~~l~~~~~~~p~~~a~~~~~--~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~ 104 (342)
.++.++|...++.+|++.++.+.. ..+.+||.||.++++++|+.|.+.|+++||+|+++++|+++++++++||+++|+
T Consensus 10 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~~d~v~i~~~~~~~~~~~~la~~~~G~ 89 (539)
T PRK07008 10 LLISSLIAHAARHAGDTEIVSRRVEGDIHRYTYRDCERRAKQLAQALAALGVEPGDRVGTLAWNGYRHLEAYYGVSGSGA 89 (539)
T ss_pred CCHHHHHHHHHhhCCCceEEEeeccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCc
Confidence 578999999999999998887642 236899999999999999999999999999999999999999999999999999
Q ss_pred eEeccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhccC-----CCe-EEecCCCccccccccccccccccHHHHHhcc
Q 019348 105 IASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN-----LPA-VLLGSKDKVSSSGLISRSSKIVSFHDLIELS 178 (342)
Q Consensus 105 ~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (342)
+++|++|..+.+++.++++.+++++++++.+..+.+.+.. ... +......... ........++++....
T Consensus 90 ~~v~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~~ 164 (539)
T PRK07008 90 VCHTINPRLFPEQIAYIVNHAEDRYVLFDLTFLPLVDALAPQCPNVKGWVAMTDAAHLP-----AGSTPLLCYETLVGAQ 164 (539)
T ss_pred EEeecccccCHHHHHHHHhccCCcEEEEcchhHHHHHHHHhhCCCceEEEEEccCCccc-----cCCcccccHHHHhccc
Confidence 9999999999999999999999999999987765544321 111 1121111000 0112245566665433
Q ss_pred CCCCCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHHHHHHHHh
Q 019348 179 GSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQL 258 (342)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l 258 (342)
. .........+++.++++|||||||.||+|++||.+++...........+....+|++++..|++|.+++ ..++.++
T Consensus 165 ~--~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~-~~~~~~l 241 (539)
T PRK07008 165 D--GDYDWPRFDENQASSLCYTSGTTGNPKGALYSHRSTVLHAYGAALPDAMGLSARDAVLPVVPMFHVNAW-GLPYSAP 241 (539)
T ss_pred C--CCcCcccCCcccceEEEECCCCCCCCcEEEEecHHHHHHHHHhhcccccCCCCCceEEecCchHHhhhH-HHHHHHH
Confidence 2 222223456788999999999999999999999998754322223334556688999999999998887 6678889
Q ss_pred hcCCeEEEc-cCCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCCHHHHHHHHHhCCCCc
Q 019348 259 QKGNCVVSM-GKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGAT 337 (342)
Q Consensus 259 ~~G~~~v~~-~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~ 337 (342)
..|++++++ +.+++..+++.++++++|++.++|.++..+++.......+++++|.+++||+++++++.+++++.++ ++
T Consensus 242 ~~G~~~~~~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~-~~ 320 (539)
T PRK07008 242 LTGAKLVLPGPDLDGKSLYELIEAERVTFSAGVPTVWLGLLNHMREAGLRFSTLRRTVIGGSACPPAMIRTFEDEYG-VE 320 (539)
T ss_pred hcCceEEEecCCcCHHHHHHHHHHcCCEEEEechHHHHHHHhcccccCCCcccceEEEEcCCCCCHHHHHHHHHHhC-Cc
Confidence 999999987 4579999999999999999999999999999887666678899999999999999999999999997 89
Q ss_pred ccccC
Q 019348 338 IFQKI 342 (342)
Q Consensus 338 l~~~Y 342 (342)
+++.|
T Consensus 321 l~~~Y 325 (539)
T PRK07008 321 VIHAW 325 (539)
T ss_pred eeccc
Confidence 99887
No 52
>PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional
Probab=100.00 E-value=1.8e-38 Score=296.63 Aligned_cols=298 Identities=22% Similarity=0.317 Sum_probs=244.3
Q ss_pred CCHHHHHhhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeE
Q 019348 27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA 106 (342)
Q Consensus 27 ~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~ 106 (342)
.++.++|.+.++.+||++|+++. ++.+||+||.+++.++|..|.+.|+++|++|+++++|+++++++++||+++|+++
T Consensus 21 ~~l~~~l~~~a~~~p~~~a~~~~--~~~~Ty~el~~~v~~la~~L~~~gi~~g~~V~v~~~n~~~~~~~~lA~~~~G~~~ 98 (542)
T PRK06155 21 RTLPAMLARQAERYPDRPLLVFG--GTRWTYAEAARAAAAAAHALAAAGVKRGDRVALMCGNRIEFLDVFLGCAWLGAIA 98 (542)
T ss_pred cCHHHHHHHHHHHCCCCeEEEeC--CccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHHhCCEE
Confidence 58999999999999999999987 7899999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhccC-----CC-eEEecCCCccccccccccccccccHHHHHhccCC
Q 019348 107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN-----LP-AVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGS 180 (342)
Q Consensus 107 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (342)
+|+++.++.+++.++++.+++++++++.+....+.... .. .+.++..... .....+. ...+....
T Consensus 99 vpl~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~-~~~~~~~~-- 169 (542)
T PRK06155 99 VPINTALRGPQLEHILRNSGARLLVVEAALLAALEAADPGDLPLPAVWLLDAPASV------SVPAGWS-TAPLPPLD-- 169 (542)
T ss_pred EEeccccCHHHHHHHHHhcCceEEEEChhhHHHHHHhcccccCcceEEEecCcccc------ccccccc-hhhhcccC--
Confidence 99999999999999999999999999987766554432 11 2222211100 0000000 00111100
Q ss_pred CCCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHHHHHHHHhhc
Q 019348 181 VTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQK 260 (342)
Q Consensus 181 ~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~ 260 (342)
.........++++++|+|||||||.||+|+++|.++...... ....+.+..++++++..|++|..++ ..++.++..
T Consensus 170 -~~~~~~~~~~~~~a~il~TSGTTG~PK~V~~t~~~~~~~~~~--~~~~~~~~~~~~~l~~~pl~~~~~~-~~~~~~l~~ 245 (542)
T PRK06155 170 -APAPAAAVQPGDTAAILYTSGTTGPSKGVCCPHAQFYWWGRN--SAEDLEIGADDVLYTTLPLFHTNAL-NAFFQALLA 245 (542)
T ss_pred -CCCCCCCCCCCCeEEEEECCCCCCCCcEEEEEHHHHHHHHHH--HHHhcCCCCCCEEEEecCHHHHHHH-HHHHHHHHc
Confidence 111122345689999999999999999999999999876433 3444556788999999999999998 677999999
Q ss_pred CCeEEEccCCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCCHHHHHHHHHhCCCCcccc
Q 019348 261 GNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQ 340 (342)
Q Consensus 261 G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~ 340 (342)
|+++++.+++++..+++.++++++|++.++|+++..|.+.........+++|.++.|| +++.+.+++++.++ +++++
T Consensus 246 G~~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~~~~g~--~~~~~~~~~~~~~~-~~v~~ 322 (542)
T PRK06155 246 GATYVLEPRFSASGFWPAVRRHGATVTYLLGAMVSILLSQPARESDRAHRVRVALGPG--VPAALHAAFRERFG-VDLLD 322 (542)
T ss_pred CceEEeeCCCCHHHHHHHHHHhCCcEEEchHHHHHHHHcCcCccccccCceEEEEEcC--CCHHHHHHHHHHcC-CCEEe
Confidence 9999999999999999999999999999999999999988766666778899877665 67999999999997 89998
Q ss_pred cC
Q 019348 341 KI 342 (342)
Q Consensus 341 ~Y 342 (342)
.|
T Consensus 323 ~Y 324 (542)
T PRK06155 323 GY 324 (542)
T ss_pred ee
Confidence 87
No 53
>PRK06060 acyl-CoA synthetase; Validated
Probab=100.00 E-value=4.3e-39 Score=309.46 Aligned_cols=286 Identities=21% Similarity=0.277 Sum_probs=235.4
Q ss_pred CHHHHHhhhccc--CCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCe
Q 019348 28 SMVHFLFRNSAS--YSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAI 105 (342)
Q Consensus 28 ~l~~~l~~~~~~--~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~ 105 (342)
|+.+++.+.+.+ +||++|+++. +.+||+||.++++++|+.|.+.|+++||+|+|+++|+++++++++||+++|++
T Consensus 5 ~~~~~~~~~a~~~~~pd~~a~~~~---~~~Ty~eL~~~~~~lA~~L~~~g~~~g~~V~i~~~~~~~~~~~~la~~~aG~~ 81 (705)
T PRK06060 5 NLAGLLAEQASEAGWYDRPAFYAA---DVVTHGQIHDGAARLGEVLRNRGLSSGDRVLLCLPDSPDLVQLLLACLARGVM 81 (705)
T ss_pred CHHHHHHHHHhhccCCCceEEEec---CceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCcE
Confidence 788999988876 7999999864 37999999999999999999999999999999999999999999999999999
Q ss_pred EeccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhccCCCeEEecCCCccccccccccccccccHHHHHhccCCCCCCC
Q 019348 106 ASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIP 185 (342)
Q Consensus 106 ~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (342)
++|++|.++.+++.++++.++++++|++.+....+.... .. ................
T Consensus 82 ~vpi~p~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~----~~-------------------~~~~~~~~~~~~~~~~ 138 (705)
T PRK06060 82 AFLANPELHRDDHALAARNTEPALVVTSDALRDRFQPSR----VA-------------------EAAELMSEAARVAPGG 138 (705)
T ss_pred EEecCCCCCHHHHHHHHhcCCCcEEEEchHHhhhhcccc----cc-------------------hhhhhhhhccccCCCC
Confidence 999999999999999999999999999876544332110 00 0011111100001111
Q ss_pred CCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHHHHHHHHhhcCCeEE
Q 019348 186 DVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVV 265 (342)
Q Consensus 186 ~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v 265 (342)
.....+++.++++|||||||.||||+++|+++........ ...+.+...|++++..|++|.+++...++.++..|++++
T Consensus 139 ~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~~~~~~~~~~-~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~l~~G~~~v 217 (705)
T PRK06060 139 YEPMGGDALAYATYTSGTTGPPKAAIHRHADPLTFVDAMC-RKALRLTPEDTGLCSARMYFAYGLGNSVWFPLATGGSAV 217 (705)
T ss_pred CCCCCCCCeEEEEECCCCCCCCcEEEEccccHHHHHHHHH-HHhhCCCCcceeEEeccchhhcchhHHHHHHHhcCCEEE
Confidence 1234568899999999999999999999999987643321 223456788999999999999988667889999999999
Q ss_pred Ecc-CCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCCHHHHHHHHHhCCCCcccccC
Q 019348 266 SMG-KFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQKI 342 (342)
Q Consensus 266 ~~~-~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~Y 342 (342)
+.+ .+++..++..++++++|+++++|+++..+++... ..++++||.+++||+++++++.++|.+.|+++++++.|
T Consensus 218 ~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~--~~~~~slr~i~~gGe~l~~~~~~~~~~~~~~~~~~~~Y 293 (705)
T PRK06060 218 INSAPVTPEAAAILSARFGPSVLYGVPNFFARVIDSCS--PDSFRSLRCVVSAGEALELGLAERLMEFFGGIPILDGI 293 (705)
T ss_pred EeCCCCCHHHHHHHHHhcCCeEEeeHHHHHHHHHHhcc--cccccceeEEEEecCcCCHHHHHHHHHHcCCCceEeee
Confidence 986 5788999999999999999999999999987652 34578999999999999999999999999878999988
No 54
>PLN02430 long-chain-fatty-acid-CoA ligase
Probab=100.00 E-value=1e-38 Score=303.40 Aligned_cols=312 Identities=19% Similarity=0.189 Sum_probs=233.6
Q ss_pred CCHHHHHhhhcccCCCceEEEeCC---C--C--cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHH
Q 019348 27 FSMVHFLFRNSASYSSKLALIDAD---S--D--ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGV 99 (342)
Q Consensus 27 ~~l~~~l~~~~~~~p~~~a~~~~~---~--~--~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~ 99 (342)
.|+.++|.+.++++|+++|+.... . + .++||+|+.+++.++|..|.+.|+++||+|+|+++|+++|+++++||
T Consensus 42 ~t~~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~ew~~~~lA~ 121 (660)
T PLN02430 42 TTAWDIFSKSVEKYPDNKMLGWRRIVDGKVGPYMWKTYKEVYEEVLQIGSALRASGAEPGSRVGIYGSNCPQWIVAMEAC 121 (660)
T ss_pred CCHHHHHHHHHHhCCCCceEEEEecCCCCCCCcEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHH
Confidence 689999999999999999997431 1 1 35799999999999999999999999999999999999999999999
Q ss_pred HHhCCeEeccCCCCCHHHHHHHhhhcCceEEEEcccchh-hhhcc-----CCCeE-EecCCCccccccccccccccccHH
Q 019348 100 IAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWD-KVKDL-----NLPAV-LLGSKDKVSSSGLISRSSKIVSFH 172 (342)
Q Consensus 100 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~-~~~~~-----~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 172 (342)
+++|++++|+++..+++++.++++.++++++|+++.... .+... ....+ .++...................|+
T Consensus 122 ~~~G~v~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~ 201 (660)
T PLN02430 122 AAHSLICVPLYDTLGPGAVDYIVDHAEIDFVFVQDKKIKELLEPDCKSAKRLKAIVSFTSVTEEESDKASQIGVKTYSWI 201 (660)
T ss_pred HHcCCeEEEeccCCCHHHHHHHHhccCCCEEEECHHHHHHHHhhhcccCCCceEEEEECCCChHHhhhhhcCCcEEEEHH
Confidence 999999999999999999999999999999999865332 22111 11222 222111000000000111234677
Q ss_pred HHHhccCCCCCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhh-c--cccCCCeEEEEccchhHHHH
Q 019348 173 DLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQ-E--LVGELDHVVLCVLPMFHVFG 249 (342)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~-~--~~~~~~d~~~~~~p~~~~~g 249 (342)
++...+.. .........++++++|+|||||||.||||++||+++...+....... . .....+|++++.+|++|.++
T Consensus 202 ~~~~~~~~-~~~~~~~~~~~d~a~iiyTSGTTG~PKGV~lth~~~~~~~~~~~~~~~~~~~~~~~~d~~ls~lPl~H~~~ 280 (660)
T PLN02430 202 DFLHMGKE-NPSETNPPKPLDICTIMYTSGTSGDPKGVVLTHEAVATFVRGVDLFMEQFEDKMTHDDVYLSFLPLAHILD 280 (660)
T ss_pred HHHHhhcc-CCCCCCCcCcCceEEEEECCCCCCCCCEEEeecHHHHHHHHHHHhhccccccCCCCCCEEEEeCcHHHHHH
Confidence 76654431 11112234678999999999999999999999999988755432211 1 13567899999999999999
Q ss_pred HHHHHHHHhhcCCeEEEccCCCHHHHHHHHHhccceEEEecHHHHHHHHcCCC---------------------------
Q 019348 250 LSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSL--------------------------- 302 (342)
Q Consensus 250 ~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~--------------------------- 302 (342)
.. ..+.++..|+++++... ++..+++.++++++|++.++|.+++.+.+...
T Consensus 281 ~~-~~~~~l~~G~~i~~~~~-~~~~l~~~l~~~~pt~~~~vP~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (660)
T PLN02430 281 RM-IEEYFFRKGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFERIHEGIQKALQELNPRRRLIFNALYKYKLAWMNR 358 (660)
T ss_pred HH-HHHHHHHcCCEEEEeCC-ChhhHHHHHHHhCCcEEEecHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhc
Confidence 84 45667899999988754 78899999999999999999999988765210
Q ss_pred ----CCcc---C-----------CCCceEEEeecccCCHHHHHHHHHhCCCCcccccC
Q 019348 303 ----VRKF---D-----------ISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQKI 342 (342)
Q Consensus 303 ----~~~~---~-----------l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~Y 342 (342)
.... + ..++|.+++||+++++++.+.+ +.++++.++++|
T Consensus 359 ~~~~~~~~~~~d~l~~~~i~~~~G~~lr~~~~gga~l~~~~~~~~-~~~~~~~i~~~Y 415 (660)
T PLN02430 359 GYSHKKASPMADFLAFRKVKAKLGGRLRLLISGGAPLSTEIEEFL-RVTSCAFVVQGY 415 (660)
T ss_pred CCCCCCcchhHHHHHHHHHHHHhCCeEEEEEECCCCCCHHHHHHH-HHhcCCCeeeec
Confidence 0000 0 1589999999999999986554 555547888887
No 55
>PRK05857 acyl-CoA synthetase; Validated
Probab=100.00 E-value=4.1e-39 Score=300.95 Aligned_cols=297 Identities=17% Similarity=0.250 Sum_probs=235.0
Q ss_pred CCHHHHHhhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeE
Q 019348 27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA 106 (342)
Q Consensus 27 ~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~ 106 (342)
.++.+.|.+.++++|+++|+++.+.++.+||+||.+++.++|+.|.+.|+++||+|+++++|+++++++++||+++|+++
T Consensus 14 ~~~~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~e~~~~~lA~~~~G~v~ 93 (540)
T PRK05857 14 STVLDRVFEQARQQPEAIALRRCDGTSALRYRELVAEVGGLAADLRAQSVSRGSRVLVISDNGPETYLSVLACAKLGAIA 93 (540)
T ss_pred cchHHHHHHHHhhCCCcEEEeecCCCceeeHHHHHHHHHHHHHHHHHhCcCCCCEEEEEcCCCHHHHHHHHHHHHcCeEE
Confidence 58999999999999999999876556789999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhcc-----CCCeEEecCCCccccccccccccccccHHHHHhccCCC
Q 019348 107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDL-----NLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSV 181 (342)
Q Consensus 107 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (342)
+|+++..+.+++.++++.++++++++++........+ ..+.+.++.... .. .+.......
T Consensus 94 v~l~~~~~~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~--~~~~~~~~~--- 158 (540)
T PRK05857 94 VMADGNLPIAAIERFCQITDPAAALVAPGSKMASSAVPEALHSIPVIAVDIAAV----------TR--ESEHSLDAA--- 158 (540)
T ss_pred EecCccCCHHHHHHHHHhcCCceEEEeccchhccccccccccccceeEeecccc----------cc--ccccccccc---
Confidence 9999999999999999999999999987653222111 112222221100 00 000000000
Q ss_pred CCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhh--hccccCCCeEEEEccchhHHHHHHHHHHHHhh
Q 019348 182 TDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAH--QELVGELDHVVLCVLPMFHVFGLSVILYDQLQ 259 (342)
Q Consensus 182 ~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~--~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~ 259 (342)
.........++++++++|||||||.||||.++|+++.++....... ..+....+++.++..|++|.+++ ...+.++.
T Consensus 159 ~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~~l-~~~~~~l~ 237 (540)
T PRK05857 159 SLAGNADQGSEDPLAMIFTSGTTGEPKAVLLANRTFFAVPDILQKEGLNWVTWVVGETTYSPLPATHIGGL-WWILTCLM 237 (540)
T ss_pred ccccccCCCCCCeEEEEeCCCCCCCCCeEEEechhhhhhhHHhhhccccccccccCceeeecCCccccchH-HHHHHHhh
Confidence 0111223456899999999999999999999999998764332111 11233467899999999999998 67888999
Q ss_pred cCCeEEEccCCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCCHHHHHHHHHhCCCCccc
Q 019348 260 KGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIF 339 (342)
Q Consensus 260 ~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~ 339 (342)
.|+++++. +.++..+++.++++++|+++++|.+++.|+........+++++|.+++||++++....+ +.+.++ ++++
T Consensus 238 ~G~~~v~~-~~~~~~~~~~i~~~~it~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~~~~~~~~-~~~~~g-~~i~ 314 (540)
T PRK05857 238 HGGLCVTG-GENTTSLLEILTTNAVATTCLVPTLLSKLVSELKSANATVPSLRLVGYGGSRAIAADVR-FIEATG-VRTA 314 (540)
T ss_pred cceeEEec-CCChhHHHHHHHhcCcceEEeChHHHHHHHhccccCCCcCccceEEEEcCccCCchhHH-HHHHhC-Ceee
Confidence 99998764 46889999999999999999999999999987766667899999999999999987775 556676 8998
Q ss_pred ccC
Q 019348 340 QKI 342 (342)
Q Consensus 340 ~~Y 342 (342)
+.|
T Consensus 315 ~~Y 317 (540)
T PRK05857 315 QVY 317 (540)
T ss_pred ccc
Confidence 887
No 56
>PRK12467 peptide synthase; Provisional
Probab=100.00 E-value=3.7e-39 Score=351.26 Aligned_cols=287 Identities=20% Similarity=0.259 Sum_probs=247.3
Q ss_pred CCHHHHHhhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeE
Q 019348 27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA 106 (342)
Q Consensus 27 ~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~ 106 (342)
.++.++|.+.++++||++|+++. ++++||+||.++++++|+.|.+.|+++|++|+|+++|+++++++++||+++|+++
T Consensus 3095 ~~~~~l~~~~a~~~p~~~Av~~~--~~~lTY~eL~~~a~~lA~~L~~~gv~~g~~V~l~~~~s~~~vv~~lavl~aGa~~ 3172 (3956)
T PRK12467 3095 RLVHQLIEAQVARTPEAPALVFG--DQQLSYAELNRRANRLAHRLIAIGVGPDVLVGVAVERSVEMIVALLAVLKAGGAY 3172 (3956)
T ss_pred ccHHHHHHHHHHhCCCcceEeeC--CcccCHHHHHHHHHHHHHHHHHcCCCCCCeEEEEeCCCHHHHHHHHHHHhhCcEe
Confidence 68999999999999999999998 7899999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhccC-CCeEEecCCCccccccccccccccccHHHHHhccCCCCCCC
Q 019348 107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN-LPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIP 185 (342)
Q Consensus 107 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (342)
+|++|.++.+++.++++.+++++++++......+.... ...+.++.. .. .... ....
T Consensus 3173 vpld~~~p~~rl~~il~~~~~~~vlt~~~~~~~~~~~~~~~~~~~~~~-------------------~~-~~~~--~~~~ 3230 (3956)
T PRK12467 3173 VPLDPEYPRERLAYMIEDSGVKLLLTQAHLLEQLPAPAGDTALTLDRL-------------------DL-NGYS--ENNP 3230 (3956)
T ss_pred ecCCCCChHHHHHHHHhCCCCcEEEechhhhhhcccccCCceeeecch-------------------hh-cccC--CCCC
Confidence 99999999999999999999999999877655443221 122222211 00 0001 1122
Q ss_pred CCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHHHHHHHHhhcCCeEE
Q 019348 186 DVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVV 265 (342)
Q Consensus 186 ~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v 265 (342)
.....++++++|+|||||||+||||+++|+++.+.+.. ....+.++.+|+++++.|++|..+. ..++.+|..|++++
T Consensus 3231 ~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~--~~~~~~~~~~d~~l~~~~~~fd~~~-~~~~~~L~~G~~l~ 3307 (3956)
T PRK12467 3231 STRVMGENLAYVIYTSGSTGKPKGVGVRHGALANHLCW--IAEAYELDANDRVLLFMSFSFDGAQ-ERFLWTLICGGCLV 3307 (3956)
T ss_pred cccCCCCceEEEEEccCCCCCcceeeehhHHHHHHHHH--HHHhcCCCcCCEEEEecCccHhHHH-HHHHHHHhCCCEEE
Confidence 23456789999999999999999999999999998554 4555667889999999999999887 88999999999999
Q ss_pred EccC--CCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCCHHHHHHHHHhCCCCcccccC
Q 019348 266 SMGK--FDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQKI 342 (342)
Q Consensus 266 ~~~~--~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~Y 342 (342)
+++. +++..+++.|+++++|++.++|++++.+++.. ...++++||.+++|||++++++.++|++.+++++++++|
T Consensus 3308 i~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~--~~~~~~~lr~~~~gGe~~~~~~~~~~~~~~~~~~l~n~Y 3384 (3956)
T PRK12467 3308 VRDNDLWDPEELWQAIHAHRISIACFPPAYLQQFAEDA--GGADCASLDIYVFGGEAVPPAAFEQVKRKLKPRGLTNGY 3384 (3956)
T ss_pred ECCcccCCHHHHHHHHHHcCCEEEEcCHHHHHHHHhcc--cccCCCCceEEEEecCCCCHHHHHHHHHhCCCCEEEeCc
Confidence 9876 78999999999999999999999999998764 344678999999999999999999999999888999998
No 57
>PRK08315 AMP-binding domain protein; Validated
Probab=100.00 E-value=2.1e-38 Score=297.83 Aligned_cols=304 Identities=26% Similarity=0.390 Sum_probs=248.6
Q ss_pred CCHHHHHhhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeE
Q 019348 27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA 106 (342)
Q Consensus 27 ~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~ 106 (342)
.+|.++|.+.++++|+++|+++.+.++.+||+||.+++.++|..|.+.|+++||+|+++++|+++++++++||+++|+++
T Consensus 16 ~~l~~~l~~~~~~~~~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~la~~~~G~~~ 95 (559)
T PRK08315 16 QTIGQLLDRTAARYPDREALVYRDQGLRWTYREFNEEVDALAKGLLALGIEKGDRVGIWAPNVPEWVLTQFATAKIGAIL 95 (559)
T ss_pred ccHHHHHHHHHHHCCCCeEEEEcCCCeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHHhCeEE
Confidence 58999999999999999999987667899999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCHHHHHHHhhhcCceEEEEcccchh-----hhhccCC-------------------CeEEecCCCcccccccc
Q 019348 107 STANPVYTVSELSKQVKDSNPKLVITVPELWD-----KVKDLNL-------------------PAVLLGSKDKVSSSGLI 162 (342)
Q Consensus 107 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~-----~~~~~~~-------------------~~~~~~~~~~~~~~~~~ 162 (342)
+|++|..+.+++..+++.++++++++++.... .+.+... ..+..+.
T Consensus 96 v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 165 (559)
T PRK08315 96 VTINPAYRLSELEYALNQSGCKALIAADGFKDSDYVAMLYELAPELATCEPGQLQSARLPELRRVIFLGD---------- 165 (559)
T ss_pred EecCccCCHHHHHHHHHhcCCCEEEEeccccccchHHHHHHhhhhhhcccccccccccCCCceeEEeecc----------
Confidence 99999999999999999999999999875421 1111100 0111110
Q ss_pred ccccccccHHHHHhccCCCC----CCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEE
Q 019348 163 SRSSKIVSFHDLIELSGSVT----DIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVV 238 (342)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~ 238 (342)
........+.++........ .........+++++++|||||||.||+|.++|.++...+.. ......+..+|++
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~--~~~~~~~~~~d~~ 243 (559)
T PRK08315 166 EKHPGMLNFDELLALGRAVDDAELAARQATLDPDDPINIQYTSGTTGFPKGATLTHRNILNNGYF--IGEAMKLTEEDRL 243 (559)
T ss_pred cCCcccccHHHHHhhccccccccccchhccCCCCCcEEEEEcCCCCCCcceEEeeHHHHHHHHHH--HHHhcCCCCCceE
Confidence 01122234444433221000 11122345678999999999999999999999999887554 4445566788999
Q ss_pred EEccchhHHHHHHHHHHHHhhcCCeEEE-ccCCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEee
Q 019348 239 LCVLPMFHVFGLSVILYDQLQKGNCVVS-MGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSG 317 (342)
Q Consensus 239 ~~~~p~~~~~g~~~~~~~~l~~G~~~v~-~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~g 317 (342)
+...|++|.++++..++.++..|+++++ ...+++..+++.++++++|++.++|+++..++........++++||.+++|
T Consensus 244 ~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~~~~~~~~~~~~~~~lr~~~~~ 323 (559)
T PRK08315 244 CIPVPLYHCFGMVLGNLACVTHGATMVYPGEGFDPLATLAAVEEERCTALYGVPTMFIAELDHPDFARFDLSSLRTGIMA 323 (559)
T ss_pred EEecCcHHHHHHHHHHHHHHhccceEEEecCCCCHHHHHHHHHHcCCeEEecchHHHHHHHhCcccCCCCchhhheeEec
Confidence 9999999999997889999999999995 456899999999999999999999999999988776666788999999999
Q ss_pred cccCCHHHHHHHHHhCCCCcccccC
Q 019348 318 AAPLGKELMEDCQKNIPGATIFQKI 342 (342)
Q Consensus 318 G~~l~~~~~~~~~~~~~~~~l~~~Y 342 (342)
|+++++++.+++++.++..++++.|
T Consensus 324 G~~~~~~~~~~~~~~~~~~~l~~~Y 348 (559)
T PRK08315 324 GSPCPIEVMKRVIDKMHMSEVTIAY 348 (559)
T ss_pred CCCCCHHHHHHHHHHcCCcceeEEE
Confidence 9999999999999999855688877
No 58
>PRK09274 peptide synthase; Provisional
Probab=100.00 E-value=5.1e-39 Score=301.48 Aligned_cols=295 Identities=22% Similarity=0.342 Sum_probs=235.3
Q ss_pred CCHHHHHhhhcccCCCceEEEeCCCC--------cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHH
Q 019348 27 FSMVHFLFRNSASYSSKLALIDADSD--------ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLG 98 (342)
Q Consensus 27 ~~l~~~l~~~~~~~p~~~a~~~~~~~--------~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA 98 (342)
+|+.+++.+.++++|+++|+++.+.+ +++||+||.++++++|++|.+.|+++||+|+++++|+++++++++|
T Consensus 6 ~~~~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~g~~~gd~V~~~~~n~~~~~~~~la 85 (552)
T PRK09274 6 ANIARHLPRAAQERPDQLAVAVPGGRGADGKLAYDELSFAELDARSDAIAHGLNAAGIGRGMRAVLMVTPSLEFFALTFA 85 (552)
T ss_pred hhHHHHHHHHHHhCCCcceEEeccCCCCccccccCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCcHHHHHHHHH
Confidence 68999999999999999999976322 2899999999999999999999999999999999999999999999
Q ss_pred HHHhCCeEeccCCCCCHHHHHHHhhhcCceEEEEccc--chhhhhccC---C-CeEEecCCCccccccccccccccccHH
Q 019348 99 VIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPE--LWDKVKDLN---L-PAVLLGSKDKVSSSGLISRSSKIVSFH 172 (342)
Q Consensus 99 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~--~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (342)
|+++|++++|++|.++.+++.+++++++++++|++++ ....+.... . ..+.++.. .......+.
T Consensus 86 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~----------~~~~~~~~~ 155 (552)
T PRK09274 86 LFKAGAVPVLVDPGMGIKNLKQCLAEAQPDAFIGIPKAHLARRLFGWGKPSVRRLVTVGGR----------LLWGGTTLA 155 (552)
T ss_pred HHHcCeEEEEcCCCccHHHHHHHHHhcCCCEEEeccHHHHHHHHhccCccchhheeccccc----------cccCCccHH
Confidence 9999999999999999999999999999999998752 222221111 1 11111110 011112344
Q ss_pred HHHhccCCCCCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHHH
Q 019348 173 DLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSV 252 (342)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~ 252 (342)
++...... .........++++++|+|||||||.||+|+++|+++...+.. ....+....+|+.++..|++|.+++
T Consensus 156 ~~~~~~~~-~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~--~~~~~~~~~~~~~~~~~pl~~~~~~-- 230 (552)
T PRK09274 156 TLLRDGAA-APFPMADLAPDDMAAILFTSGSTGTPKGVVYTHGMFEAQIEA--LREDYGIEPGEIDLPTFPLFALFGP-- 230 (552)
T ss_pred HhcccCcc-ccCCCCCCCCCCeEEEEECCCCCCCCceEEecHHHHHHHHHH--HHHHhCCCCCceeeeccCHHHhhhh--
Confidence 43311110 112223446689999999999999999999999999987554 3445556788999999999886653
Q ss_pred HHHHHhhcCCeEEEcc-------CCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCCHHH
Q 019348 253 ILYDQLQKGNCVVSMG-------KFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKEL 325 (342)
Q Consensus 253 ~~~~~l~~G~~~v~~~-------~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~ 325 (342)
..|+++++++ .+++..+++.++++++|+++++|++++.|.+.......++++||.+++||+++++++
T Consensus 231 ------~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~~~~~~ 304 (552)
T PRK09274 231 ------ALGMTSVIPDMDPTRPATVDPAKLFAAIERYGVTNLFGSPALLERLGRYGEANGIKLPSLRRVISAGAPVPIAV 304 (552)
T ss_pred ------hhCCeEEecCcccccccccCHHHHHHHHHHcCCeEEeccHHHHHHHHHHhhhcCCCCchhhEEEecCCcCCHHH
Confidence 3588888764 468999999999999999999999999999877656678999999999999999999
Q ss_pred HHHHHHhCC-CCcccccC
Q 019348 326 MEDCQKNIP-GATIFQKI 342 (342)
Q Consensus 326 ~~~~~~~~~-~~~l~~~Y 342 (342)
.+++++.|+ ++++++.|
T Consensus 305 ~~~~~~~~~~~~~~~~~Y 322 (552)
T PRK09274 305 IERFRAMLPPDAEILTPY 322 (552)
T ss_pred HHHHHHHcCCCceEEccc
Confidence 999999997 37899887
No 59
>PRK05677 long-chain-fatty-acid--CoA ligase; Validated
Probab=100.00 E-value=4.3e-38 Score=295.58 Aligned_cols=312 Identities=21% Similarity=0.358 Sum_probs=243.3
Q ss_pred CCHHHHHhhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCCChHHHHHHHHHHhCCe
Q 019348 27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRH-LGITKKDVVLIFAPNSIHFPICFLGVIAIGAI 105 (342)
Q Consensus 27 ~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~-~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~ 105 (342)
.|+.+.|.+.++++|+++|+++. ++.+||+||.+++.++|+.|.+ .|+++||+|+++++|++++++++|||+++|++
T Consensus 24 ~~~~~~l~~~a~~~p~~~al~~~--~~~~Ty~el~~~~~~la~~L~~~~gi~~gd~Vai~~~n~~~~~~~~la~~~~Ga~ 101 (562)
T PRK05677 24 PNIQAVLKQSCQRFADKPAFSNL--GKTLTYGELYKLSGAFAAWLQQHTDLKPGDRIAVQLPNVLQYPVAVFGAMRAGLI 101 (562)
T ss_pred CcHHHHHHHHHHhCCCCeeEEEC--CceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeE
Confidence 68999999999999999999986 7899999999999999999987 59999999999999999999999999999999
Q ss_pred EeccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhcc----CCCeEEecCCCcccc-c---------------cccccc
Q 019348 106 ASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDL----NLPAVLLGSKDKVSS-S---------------GLISRS 165 (342)
Q Consensus 106 ~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~----~~~~~~~~~~~~~~~-~---------------~~~~~~ 165 (342)
++|++|..+.+++.++++.++++++|++.+....+.+. ..+.+.......... . ......
T Consensus 102 ~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (562)
T PRK05677 102 VVNTNPLYTAREMEHQFNDSGAKALVCLANMAHLAEKVLPKTGVKHVIVTEVADMLPPLKRLLINAVVKHVKKMVPAYHL 181 (562)
T ss_pred EeecCCCCCHHHHHHHHhccCceEEEEecchhhhHHHhhhccCcceeEEecccccccchhhhhcccchhhccccccccCC
Confidence 99999999999999999999999999987665443221 122222221100000 0 000001
Q ss_pred cccccHHHHHhccCCCCCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccC-CCeEEEEccch
Q 019348 166 SKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGE-LDHVVLCVLPM 244 (342)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~-~~d~~~~~~p~ 244 (342)
.....+.+.+..... .........++++++|+|||||||.||||+++|+++...+............ ..+++++.+|+
T Consensus 182 ~~~~~~~~~~~~~~~-~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl 260 (562)
T PRK05677 182 PQAVKFNDALAKGAG-QPVTEANPQADDVAVLQYTGGTTGVAKGAMLTHRNLVANMLQCRALMGSNLNEGCEILIAPLPL 260 (562)
T ss_pred cccccHHHHHhcCCC-CCCCCCCCCccCEEEEEeCCCCCCCCcEEEEehhHHHHHHHHHHHHhccCCCCCccEEEEcCcH
Confidence 122334444332221 1112233467899999999999999999999999998764332211112222 35788999999
Q ss_pred hHHHHHHHHHHHHhhcCCeEEEcc-CCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCCH
Q 019348 245 FHVFGLSVILYDQLQKGNCVVSMG-KFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGK 323 (342)
Q Consensus 245 ~~~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~ 323 (342)
+|.+++...++..+..|++.++.+ .+++..+++.++++++|+++++|.++..++........+++++|.+++||+++++
T Consensus 261 ~h~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~v~~gG~~~~~ 340 (562)
T PRK05677 261 YHIYAFTFHCMAMMLIGNHNILISNPRDLPAMVKELGKWKFSGFVGLNTLFVALCNNEAFRKLDFSALKLTLSGGMALQL 340 (562)
T ss_pred HHHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHHHcCceEEecHHHHHHHHHhCcccccCChhhceEEEEcCccCCH
Confidence 999998667888888998877664 5789999999999999999999999999988765555567899999999999999
Q ss_pred HHHHHHHHhCCCCcccccC
Q 019348 324 ELMEDCQKNIPGATIFQKI 342 (342)
Q Consensus 324 ~~~~~~~~~~~~~~l~~~Y 342 (342)
++.+.|++.++ +++++.|
T Consensus 341 ~~~~~~~~~~~-~~v~~~Y 358 (562)
T PRK05677 341 ATAERWKEVTG-CAICEGY 358 (562)
T ss_pred HHHHHHHHHcC-CCeeccC
Confidence 99999999886 8999887
No 60
>PRK13383 acyl-CoA synthetase; Provisional
Probab=100.00 E-value=1.4e-38 Score=296.02 Aligned_cols=289 Identities=17% Similarity=0.232 Sum_probs=236.4
Q ss_pred CCCHHHHHhhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCe
Q 019348 26 SFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAI 105 (342)
Q Consensus 26 ~~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~ 105 (342)
+.++.+.+.+.++.+||++|+++. ++.+||+||.+++.++|+.|.+.|+++||+|+++++|+++++++++||+++|++
T Consensus 34 ~~~~~~~~~~~a~~~p~~~a~~~~--~~~lTy~el~~~~~~la~~L~~~gi~~g~~V~i~~~~~~~~~~~~la~~~~G~v 111 (516)
T PRK13383 34 GTNPYTLLAVTAARWPGRTAIIDD--DGALSYRELQRATESLARRLTRDGVAPGRAVGVMCRNGRGFVTAVFAVGLLGAD 111 (516)
T ss_pred CCcHHHHHHHHHHHCCCCcEEEeC--CCcEeHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHhCeE
Confidence 379999999999999999999986 679999999999999999999999999999999999999999999999999999
Q ss_pred EeccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhccCCCeEEecCCCccccccccccccccccHHHHHhccCCCCCCC
Q 019348 106 ASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIP 185 (342)
Q Consensus 106 ~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (342)
++|+++..+.+++.++++.++++.++++++....+.........++... .... . ...
T Consensus 112 ~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~--~---~~~- 168 (516)
T PRK13383 112 VVPISTEFRSDALAAALRAHHISTVVADNEFAERIAGADDAVAVIDPAT-----------------AGAE--E---SGG- 168 (516)
T ss_pred EEEcCccCCHHHHHHHHhcCCCCEEEEchhHHHHHHhhhcceEEeccch-----------------hhhh--c---CCC-
Confidence 9999999999999999999999999999877665544332222222110 0000 0 000
Q ss_pred CCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHHHHHHHHhhcCCeEE
Q 019348 186 DVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVV 265 (342)
Q Consensus 186 ~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v 265 (342)
.....++.++|+|||||||.||+|.++|....................+|+++...|++|.+|+ ..++.++..|++++
T Consensus 169 -~p~~~~~~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~-~~~~~~l~~G~~~~ 246 (516)
T PRK13383 169 -RPAVAAPGRIVLLTSGTTGKPKGVPRAPQLRSAVGVWVTILDRTRLRTGSRISVAMPMFHGLGL-GMLMLTIALGGTVL 246 (516)
T ss_pred -CCCCCCCCcEEEECCCCCCCCCeeeecchhhhhhhhHHhHHhhhccCCCCeEEEecCCcchhhH-HHHHHHHhcCCEEE
Confidence 0112345678999999999999999999743222111112223445678999999999999999 67888999999999
Q ss_pred EccCCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCC--CccCCCCceEEEeecccCCHHHHHHHHHhCCCCcccccC
Q 019348 266 SMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLV--RKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQKI 342 (342)
Q Consensus 266 ~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~--~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~Y 342 (342)
+...+++..+++.++++++|.+.++|.++..+.+.... ...+++++|.+++||+++++++.++|.+.|+ ..+++.|
T Consensus 247 ~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~g-~~v~~~Y 324 (516)
T PRK13383 247 THRHFDAEAALAQASLHRADAFTAVPVVLARILELPPRVRARNPLPQLRVVMSSGDRLDPTLGQRFMDTYG-DILYNGY 324 (516)
T ss_pred ECCCCCHHHHHHHHHHhCCcEEEecHHHHHHHHhccccccccCCCCceEEEEECCCCCCHHHHHHHHHHcC-chhhhcc
Confidence 99889999999999999999999999999999876532 2345789999999999999999999999997 8898887
No 61
>PRK10524 prpE propionyl-CoA synthetase; Provisional
Probab=100.00 E-value=2.2e-38 Score=301.28 Aligned_cols=309 Identities=23% Similarity=0.314 Sum_probs=238.2
Q ss_pred CCH-HHHHhhhcccCCCceEEEeCC----CCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHH
Q 019348 27 FSM-VHFLFRNSASYSSKLALIDAD----SDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIA 101 (342)
Q Consensus 27 ~~l-~~~l~~~~~~~p~~~a~~~~~----~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~ 101 (342)
.|+ .+.|.++++.+|+++|+++.+ ..+.+||+||.+++.++|+.|++.|+++||+|+++++|+++++++++||++
T Consensus 52 ~n~~~~~l~~~~~~~p~~~A~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~ 131 (629)
T PRK10524 52 TNLCHNAVDRHLAKRPEQLALIAVSTETDEERTYTFRQLHDEVNRMAAMLRSLGVQRGDRVLIYMPMIAEAAFAMLACAR 131 (629)
T ss_pred eeHHHHHHHHhhccCCCCeEEEEEcCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHH
Confidence 344 567778888899999998632 247899999999999999999999999999999999999999999999999
Q ss_pred hCCeEeccCCCCCHHHHHHHhhhcCceEEEEcccch---------hhhh----cc---CCCeEEecCCCccccccccccc
Q 019348 102 IGAIASTANPVYTVSELSKQVKDSNPKLVITVPELW---------DKVK----DL---NLPAVLLGSKDKVSSSGLISRS 165 (342)
Q Consensus 102 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~----~~---~~~~~~~~~~~~~~~~~~~~~~ 165 (342)
+|++++|++|..+.+++.++++.++++++|+++... +.+. .. ....+.++..... . ....
T Consensus 132 ~Gav~v~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~--~--~~~~ 207 (629)
T PRK10524 132 IGAIHSVVFGGFASHSLAARIDDAKPVLIVSADAGSRGGKVVPYKPLLDEAIALAQHKPRHVLLVDRGLAP--M--ARVA 207 (629)
T ss_pred hCcEEEeeCCCCCHHHHHHHHHhcCCcEEEEccCcccCCcccccHHHHHHHHHhcCCCCCEEEEEeCCCCC--c--Cccc
Confidence 999999999999999999999999999999976421 1111 11 1123333211000 0 0001
Q ss_pred cccccHHHHHhccCCCCCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchh
Q 019348 166 SKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMF 245 (342)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~ 245 (342)
.....+.++...... .........++++++|+|||||||.||||+++|.+++..... .....+....+|++++..|++
T Consensus 208 ~~~~~~~~~~~~~~~-~~~~~~~~~~~d~a~il~TSGTTG~PKgV~~~~~~~~~~~~~-~~~~~~~~~~~d~~~~~~~~~ 285 (629)
T PRK10524 208 GRDVDYATLRAQHLG-ARVPVEWLESNEPSYILYTSGTTGKPKGVQRDTGGYAVALAT-SMDTIFGGKAGETFFCASDIG 285 (629)
T ss_pred CCcccHHHHHhcCCC-CCCCceeeCCCCceEEEeecCCCCCCceEEECCcHHHHHHHH-HHHHhcCCCCCCEEEEcCCCC
Confidence 112345554432210 111122345689999999999999999999999987543211 123334567889999999999
Q ss_pred HHHHHHHHHHHHhhcCCeEEEcc----CCCHHHHHHHHHhccceEEEecHHHHHHHHcCCC--CCccCCCCceEEEeecc
Q 019348 246 HVFGLSVILYDQLQKGNCVVSMG----KFDIEMALRAIEKYRVTVWWVVPPIILALAKNSL--VRKFDISSLKLVGSGAA 319 (342)
Q Consensus 246 ~~~g~~~~~~~~l~~G~~~v~~~----~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~--~~~~~l~~lr~~~~gG~ 319 (342)
|..+....++.++..|+++++.+ ..++..+++.++++++|+++++|++++.|.+... ....++++||.+++||+
T Consensus 286 ~~~~~~~~~~~~l~~G~~~v~~~g~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~~Ge 365 (629)
T PRK10524 286 WVVGHSYIVYAPLLAGMATIMYEGLPTRPDAGIWWRIVEKYKVNRMFSAPTAIRVLKKQDPALLRKHDLSSLRALFLAGE 365 (629)
T ss_pred eeccchHHHHHHHhCCCEEEEECCCCCCCChHHHHHHHHHcCceEEEeCHHHHHHHHhcCcccccccChhheeEEEEeCC
Confidence 99887677899999999999875 3478999999999999999999999999887643 23457899999999999
Q ss_pred cCCHHHHHHHHHhCCCCcccccC
Q 019348 320 PLGKELMEDCQKNIPGATIFQKI 342 (342)
Q Consensus 320 ~l~~~~~~~~~~~~~~~~l~~~Y 342 (342)
++++++.+++++.++ +++++.|
T Consensus 366 ~l~~~~~~~~~~~~~-~~v~~~Y 387 (629)
T PRK10524 366 PLDEPTASWISEALG-VPVIDNY 387 (629)
T ss_pred CCCHHHHHHHHHhcC-CCeEecc
Confidence 999999999999997 8888887
No 62
>PRK13388 acyl-CoA synthetase; Provisional
Probab=100.00 E-value=3.3e-38 Score=294.77 Aligned_cols=289 Identities=15% Similarity=0.172 Sum_probs=234.5
Q ss_pred CCHHHHHhhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCC-CCCCEEEEECCCCChHHHHHHHHHHhCCe
Q 019348 27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGI-TKKDVVLIFAPNSIHFPICFLGVIAIGAI 105 (342)
Q Consensus 27 ~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~-~~g~~V~i~~~n~~~~~~~~lA~~~~G~~ 105 (342)
.|+.+++.+.+ .|+++|+++. +..+||.||.++++++|..|.+.|+ ++||+|+++++|+++++++++||+++|++
T Consensus 3 ~~~~~~l~~~~--~p~~~Al~~~--~~~lTy~el~~~~~~la~~L~~~g~~~~~~~V~i~~~n~~~~v~~~lA~~~~Ga~ 78 (540)
T PRK13388 3 DTIAQLLRDRA--GDDTIAVRYG--DRTWTWREVLAEAAARAAALIALADPDRPLHVGVLLGNTPEMLFWLAAAALGGYV 78 (540)
T ss_pred hhHHHHHHhhc--cCCceEEEEC--CceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCcHHHHHHHHHHhCCCE
Confidence 47888888765 6999999987 7899999999999999999999999 79999999999999999999999999999
Q ss_pred EeccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhccC---CCeEEecCCCccccccccccccccccHHHHHhccCCCC
Q 019348 106 ASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN---LPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVT 182 (342)
Q Consensus 106 ~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (342)
++|++|..+.+++.++++.+++++++++++....+.+.. ...+.++.. .+.+++.... .
T Consensus 79 ~v~l~p~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~----------------~~~~~~~~~~--~ 140 (540)
T PRK13388 79 LVGLNTTRRGAALAADIRRADCQLLVTDAEHRPLLDGLDLPGVRVLDVDTP----------------AYAELVAAAG--A 140 (540)
T ss_pred EEEecccCChHHHHHHHHhcCCCEEEEChhhhHHHHhhcccCceEEEccch----------------hhhhhhcccc--C
Confidence 999999999999999999999999999987766554432 122222111 2223332111 1
Q ss_pred CCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHHHHHHHHhhcCC
Q 019348 183 DIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGN 262 (342)
Q Consensus 183 ~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~ 262 (342)
........++++++++|||||||.||||.++|.++...+.. ....+....+|+++...|++|.+++...++.++..|+
T Consensus 141 ~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~--~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~l~~G~ 218 (540)
T PRK13388 141 LTPHREVDAMDPFMLIFTSGTTGAPKAVRCSHGRLAFAGRA--LTERFGLTRDDVCYVSMPLFHSNAVMAGWAPAVASGA 218 (540)
T ss_pred cCCCCCCCCCCeEEEEECCCCCCCCCEEEecHHHHHHHHHH--HHHHhCCCCCCEEEEeeCchhhcchHHHHHHHHHcCc
Confidence 11112346789999999999999999999999999876544 3445556788999999999999998555667899999
Q ss_pred eEEEccCCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCCHHHHHHHHHhCCCCcccccC
Q 019348 263 CVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQKI 342 (342)
Q Consensus 263 ~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~Y 342 (342)
++++.+.+++..+++.++++++|++..+|..+..++...........+++.+ + |+++++...++|.+.++ +++++.|
T Consensus 219 ~~v~~~~~~~~~~~~~i~~~~vt~~~~~p~~l~~l~~~~~~~~~~~~~l~~~-~-G~~~~~~~~~~~~~~~~-~~l~~~Y 295 (540)
T PRK13388 219 AVALPAKFSASGFLDDVRRYGATYFNYVGKPLAYILATPERPDDADNPLRVA-F-GNEASPRDIAEFSRRFG-CQVEDGY 295 (540)
T ss_pred EEEECCCCCHHHHHHHHHHhCCeEEEehHHHHHHHHhCCCCccccccceEEE-E-CCCCCHHHHHHHHHHhC-Cceeccc
Confidence 9999988999999999999999999999999999887654333334466643 3 56778899999999997 8999988
No 63
>TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase. Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris.
Probab=100.00 E-value=4.6e-38 Score=294.06 Aligned_cols=300 Identities=22% Similarity=0.253 Sum_probs=244.1
Q ss_pred CCHHHHHhhhcccCCCceEEEeCC----CCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHh
Q 019348 27 FSMVHFLFRNSASYSSKLALIDAD----SDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAI 102 (342)
Q Consensus 27 ~~l~~~l~~~~~~~p~~~a~~~~~----~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~ 102 (342)
.++.+.+.+.++.+|+++|++..+ .++.+||+||.+++.++|.+|++.|+++|++|+++++|+.+++++++||+++
T Consensus 22 ~~~~~~~~~~~~~~p~~~a~~~~~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~la~~~~ 101 (538)
T TIGR03208 22 RTINDHFDAAVANCPDKPALTAYRDGHGAVRRFSYRELDCRVDRIAVGLARLGVGRGDVVSFQLPNRWEFTALYLACARI 101 (538)
T ss_pred CcHHHHHHHHHHHCCCceEEEeecccCCCcceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhc
Confidence 589999999999999999998521 2468999999999999999999999999999999999999999999999999
Q ss_pred CCeEeccCCCCCHHHHHHHhhhcCceEEEEcccchh-----hhhcc----C-CC-eEEecCCCccccccccccccccccH
Q 019348 103 GAIASTANPVYTVSELSKQVKDSNPKLVITVPELWD-----KVKDL----N-LP-AVLLGSKDKVSSSGLISRSSKIVSF 171 (342)
Q Consensus 103 G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~-----~~~~~----~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (342)
|++++|++|..+.+++.++++.++++++++++.... ...+. . .. .+..+.. ....+
T Consensus 102 G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~ 168 (538)
T TIGR03208 102 GAVLNPLMPIFRERELSFMLNHADSKVFVVPSVFRGFDHAAMARELQSKLPALRQVVVIDGD-------------GDDSF 168 (538)
T ss_pred CEEEeccCcccCHHHHHHHHHhcCCeEEEEccccccccHHHHHHHHhccCCcceEEEEecCC-------------CCcCH
Confidence 999999999999999999999999999999876421 11111 1 11 2222111 11123
Q ss_pred HHHHhccCCC--CC----CCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchh
Q 019348 172 HDLIELSGSV--TD----IPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMF 245 (342)
Q Consensus 172 ~~~~~~~~~~--~~----~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~ 245 (342)
..++...... .. .......++++++++|||||||.||+|+++|+++...+.. ....+....+|++++.+|++
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~--~~~~~~~~~~d~~l~~~pl~ 246 (538)
T TIGR03208 169 DRVLMTPERDDTPDAAAILAGPRPSPDDVTQLIYTSGTTGEPKGVMHTANTLFSNIHP--YAERLELGGGDVILMASPMA 246 (538)
T ss_pred HHHhhccccccccccccccccCCCCCCCeEEEEECCCCCCCCcEEEeehHHHHHHHHH--HHhhcCCCCCCeEEEeCCch
Confidence 3332211000 00 1112346789999999999999999999999999887554 33444567889999999999
Q ss_pred HHHHHHHHHHHHhhcCCeEEEccCCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCCHHH
Q 019348 246 HVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKEL 325 (342)
Q Consensus 246 ~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~ 325 (342)
|..+++..++.++..|+++++.+.+++..+++.++++++|++.++|.++..+.........+++++|.+++||+++++.+
T Consensus 247 h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~l~~~~~gG~~~~~~~ 326 (538)
T TIGR03208 247 HQTGFMYGLMMPLILNATAVLQDIWNPARAAELIRETGVTFTMASTPFLTDLCRAVKESGAPVPSLFTFLCAGAPIPGIL 326 (538)
T ss_pred hHHHHHHHHHHHHHcCCEEEecCccCHHHHHHHHHHhCCeEEecCHHHHHHHHhchhccCCCCCcceEEEEcCCCCCHHH
Confidence 99998778999999999999999899999999999999999999999999988765444567889999999999999999
Q ss_pred HHHHHHhCCCCcccccC
Q 019348 326 MEDCQKNIPGATIFQKI 342 (342)
Q Consensus 326 ~~~~~~~~~~~~l~~~Y 342 (342)
.+++.+.++ +++++.|
T Consensus 327 ~~~~~~~~~-~~~~~~Y 342 (538)
T TIGR03208 327 VERAWELLG-ALIVSAW 342 (538)
T ss_pred HHHHHHHcC-CeEEeee
Confidence 999999987 8899887
No 64
>PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated
Probab=100.00 E-value=8.2e-39 Score=307.78 Aligned_cols=295 Identities=21% Similarity=0.255 Sum_probs=236.1
Q ss_pred CCHHHHHhhhcccCCC-ceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCe
Q 019348 27 FSMVHFLFRNSASYSS-KLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAI 105 (342)
Q Consensus 27 ~~l~~~l~~~~~~~p~-~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~ 105 (342)
.|+.++|.+.++++|+ ++|+.+. ..+++||+||.++++++|+.|++. +++||+|+++++|+++++++++||+++|++
T Consensus 204 ~t~~~~l~~~~~~~p~~~~a~~~~-~~~~~Ty~el~~~~~~lA~~L~~~-~~~gd~Val~~~n~~e~~~~~lA~~~~G~v 281 (718)
T PRK08043 204 ETLYEALLSAQYRYGAGKPCIEDV-NFTPDSYRKLLKKTLFVGRILEKY-SVEGERIGLMLPNATISAAVIFGASLRRRI 281 (718)
T ss_pred CCHHHHHHHHHHHhCCCCcceEcC-CCCcccHHHHHHHHHHHHHHHHHh-cCCCceEEEEcCCcHHHHHHHHHHHHcCCc
Confidence 6899999999999998 5787753 247899999999999999999887 599999999999999999999999999999
Q ss_pred EeccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhc--cC-----CCeEEecCCCccccccccccccccccHHHH----
Q 019348 106 ASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKD--LN-----LPAVLLGSKDKVSSSGLISRSSKIVSFHDL---- 174 (342)
Q Consensus 106 ~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~--~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 174 (342)
++|+++.++.+++.++++++++++++++.+..+.... .. ...+.++... ....+...
T Consensus 282 ~vpl~~~~~~~~l~~~l~~s~~~~vi~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~------------~~~~~~~~~~~~ 349 (718)
T PRK08043 282 PAMMNYTAGVKGLTSAITAAEIKTIFTSRQFLDKGKLWHLPEQLTQVRWVYLEDLK------------DDVTTADKLWIF 349 (718)
T ss_pred ccccccCcCHHHHHHHHHHcCCcEEEEcHHHHhhccCCChhhhhccccEEEhhhhh------------hhcchhHHHHHH
Confidence 9999999999999999999999999998765442111 10 1112111100 00011100
Q ss_pred HhccCCCCCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHHHHH
Q 019348 175 IELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVIL 254 (342)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~ 254 (342)
..... .........++++++++|||||||.||||++||+++.+.+.. .........+|++++.+|++|.+++...+
T Consensus 350 ~~~~~--~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~--~~~~~~~~~~d~~l~~~Pl~h~~g~~~~~ 425 (718)
T PRK08043 350 AHLLM--PRLAQVKQQPEDAALILFTSGSEGHPKGVVHSHKSLLANVEQ--IKTIADFTPNDRFMSALPLFHSFGLTVGL 425 (718)
T ss_pred HHHhC--CccccCCCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHH--HHHhhCCCccCeEEEcCcchhhhhhHHHH
Confidence 00000 111112345789999999999999999999999999887554 33445567889999999999999986778
Q ss_pred HHHhhcCCeEEEccC-CCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCCHHHHHHHHHhC
Q 019348 255 YDQLQKGNCVVSMGK-FDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNI 333 (342)
Q Consensus 255 ~~~l~~G~~~v~~~~-~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~ 333 (342)
+.++..|+++++.+. +++..+++.++++++|+++.+|+++..+.+.. ...++++||.+++||+++++++.+.|++.|
T Consensus 426 ~~~l~~G~~vv~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~--~~~~~~~lr~i~~gg~~l~~~~~~~~~~~~ 503 (718)
T PRK08043 426 FTPLLTGAEVFLYPSPLHYRIVPELVYDRNCTVLFGTSTFLGNYARFA--NPYDFARLRYVVAGAEKLQESTKQLWQDKF 503 (718)
T ss_pred HHHHHcCCEEEEeCCcccHHHHHHHHHhcCCeEEEchHHHHHHhhhhc--CcccccceEEEEEeCccCCHHHHHHHHHHc
Confidence 999999999998864 57788999999999999999999998887642 345688999999999999999999999999
Q ss_pred CCCcccccC
Q 019348 334 PGATIFQKI 342 (342)
Q Consensus 334 ~~~~l~~~Y 342 (342)
+ +++++.|
T Consensus 504 g-~~l~~~Y 511 (718)
T PRK08043 504 G-LRILEGY 511 (718)
T ss_pred C-CCeeccc
Confidence 7 8999988
No 65
>PRK07470 acyl-CoA synthetase; Validated
Probab=100.00 E-value=7.2e-38 Score=292.21 Aligned_cols=299 Identities=21% Similarity=0.315 Sum_probs=242.5
Q ss_pred CCCHHHHHhhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCe
Q 019348 26 SFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAI 105 (342)
Q Consensus 26 ~~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~ 105 (342)
++|+.+++...++.+|+++|+++. ++++||+||.+++.++|+.|++.|+++||+|+++++|+.+++++++||+++|++
T Consensus 6 ~~~~~~~~~~~a~~~p~~~a~~~~--~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~v~i~~~~~~~~~~~~lA~~~~G~~ 83 (528)
T PRK07470 6 VMNLAHFLRQAARRFPDRIALVWG--DRSWTWREIDARVDALAAALAARGVRKGDRILVHSRNCNQMFESMFAAFRLGAV 83 (528)
T ss_pred CCCHHHHHHHHHHHCCCceEEEEC--CccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHhCCeE
Confidence 378999999999999999999987 789999999999999999999999999999999999999999999999999999
Q ss_pred EeccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhccC-----C-CeEEecCCCccccccccccccccccHHHHHhccC
Q 019348 106 ASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN-----L-PAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSG 179 (342)
Q Consensus 106 ~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (342)
++++++..+.+++.++++.++++.++++++......... . ..+.+... .....+.++.....
T Consensus 84 ~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~ 151 (528)
T PRK07470 84 WVPTNFRQTPDEVAYLAEASGARAMICHADFPEHAAAVRAASPDLTHVVAIGGA------------RAGLDYEALVARHL 151 (528)
T ss_pred EEecCccCCHHHHHHHHHhcCceEEEEcchhHHHHHHHHhhCCcCceEEEeCCC------------cccccHHHHHhcCC
Confidence 999999999999999999999999999987654433221 1 11222110 01234555544322
Q ss_pred CCCCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHHHHHHHHhh
Q 019348 180 SVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQ 259 (342)
Q Consensus 180 ~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~ 259 (342)
. .........++++++|+|||||||.||+|.++|.++...+..............|+++...|++|.+++ ..++ .+.
T Consensus 152 ~-~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~-~~~~-~~~ 228 (528)
T PRK07470 152 G-ARVANAAVDHDDPCWFFFTSGTTGRPKAAVLTHGQMAFVITNHLADLMPGTTEQDASLVVAPLSHGAGI-HQLC-QVA 228 (528)
T ss_pred C-CCCCcccCCCCCeEEEEeCCCCCCCCcEEEEehhhHHHHHHHHHHHhccCCCcccEEEEeccchhHHHH-HHHH-HHh
Confidence 1 112223456689999999999999999999999999765433222222234678999999999999998 4444 567
Q ss_pred cCCeEEEcc--CCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCCHHHHHHHHHhCCCCc
Q 019348 260 KGNCVVSMG--KFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGAT 337 (342)
Q Consensus 260 ~G~~~v~~~--~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~ 337 (342)
.|+++++.+ .++++.+++.++++++|++.++|++++.+.+.......+++++|.+++||+++++...+++++.++ .+
T Consensus 229 ~g~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~g-~~ 307 (528)
T PRK07470 229 RGAATVLLPSERFDPAEVWALVERHRVTNLFTVPTILKMLVEHPAVDRYDHSSLRYVIYAGAPMYRADQKRALAKLG-KV 307 (528)
T ss_pred cCceEEEecccCcCHHHHHHHHHhcCCeEEechHHHHHHHHhCcCcCCCCCcceEEEEEcCCCCCHHHHHHHHHHhC-cH
Confidence 777776654 578999999999999999999999999999887666678899999999999999999999999887 78
Q ss_pred ccccC
Q 019348 338 IFQKI 342 (342)
Q Consensus 338 l~~~Y 342 (342)
+++.|
T Consensus 308 ~~~~Y 312 (528)
T PRK07470 308 LVQYF 312 (528)
T ss_pred HHHhC
Confidence 88877
No 66
>PTZ00216 acyl-CoA synthetase; Provisional
Probab=100.00 E-value=1.5e-38 Score=304.61 Aligned_cols=306 Identities=18% Similarity=0.220 Sum_probs=232.5
Q ss_pred CCHHHHHhhhcccCCCceEEEeCC-------------------------CCcceeHHHHHHHHHHHHHHHHHcCCCCCCE
Q 019348 27 FSMVHFLFRNSASYSSKLALIDAD-------------------------SDESLSFSQFKSIVIKVSHSFRHLGITKKDV 81 (342)
Q Consensus 27 ~~l~~~l~~~~~~~p~~~a~~~~~-------------------------~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~ 81 (342)
.|+.++|.+.++++||++|+...+ ..+++||+||.++++++|+.|.+.|+++||+
T Consensus 69 ~t~~~~~~~~~~~~p~~~a~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lTy~el~~~~~~lA~~L~~~Gv~~gd~ 148 (700)
T PTZ00216 69 PNFLQRLERICKERGDRRALAYRPVERVEKEVVKDADGKERTMEVTHFNETRYITYAELWERIVNFGRGLAELGLTKGSN 148 (700)
T ss_pred CCHHHHHHHHHHhCCCCCeEEEeccccccccccccCCCccccccccccCCceEeEHHHHHHHHHHHHHHHHHhCCCCCCE
Confidence 689999999999999999998741 2479999999999999999999999999999
Q ss_pred EEEECCCCChHHHHHHHHHHhCCeEeccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhcc-------CCCeEEecCCC
Q 019348 82 VLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDL-------NLPAVLLGSKD 154 (342)
Q Consensus 82 V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~-------~~~~~~~~~~~ 154 (342)
|+|+++|+++|+++++||+++|++++|+++..+.+++.++++++++++++++.+....+... ....+.++...
T Consensus 149 V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~lv~~~~~~~~l~~~~~~~~~~~~~ii~~~~~~ 228 (700)
T PTZ00216 149 VAIYEETRWEWLASIYGIWSQSMVAATVYANLGEDALAYALRETECKAIVCNGKNVPNLLRLMKSGGMPNTTIIYLDSLP 228 (700)
T ss_pred EEEEcCCCHHHHHHHHHHHHcCCeEEeeCCCCCHHHHHhhhhccCccEEEECHHHHHHHHHhhhhccCCceEEEEECCCc
Confidence 99999999999999999999999999999999999999999999999999987654433211 11223332210
Q ss_pred ccccccccccccccccHHHHHhccC--CCCCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhh--cc
Q 019348 155 KVSSSGLISRSSKIVSFHDLIELSG--SVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQ--EL 230 (342)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~--~~ 230 (342)
.. .........+|++++..+. ...........++++++|+|||||||.||||++||+++.+.+....... ..
T Consensus 229 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~iiyTSGTTG~PKGV~lth~nl~~~~~~~~~~~~~~~ 304 (700)
T PTZ00216 229 AS----VDTEGCRLVAWTDVVAKGHSAGSHHPLNIPENNDDLALIMYTSGTTGDPKGVMHTHGSLTAGILALEDRLNDLI 304 (700)
T ss_pred cc----cccCCceEEEHHHHHHhCCccccccccCCCCCcccEEEEEEeCCCCCcCcEEEEEhHHHHHHHHHHHhhccccc
Confidence 00 0011223456777765541 0011112334678999999999999999999999999998755432211 11
Q ss_pred c-cCCCeEEEEccchhHHHHHHHHHHHHhhcCCeEEEccCCCHHHHHH-------HHHhccceEEEecHHHHHHHHcCCC
Q 019348 231 V-GELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALR-------AIEKYRVTVWWVVPPIILALAKNSL 302 (342)
Q Consensus 231 ~-~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~-------~i~~~~~t~~~~~P~~l~~l~~~~~ 302 (342)
. ...+|++++++|++|.+++ ......+..|+++++. ++..+.+ .++++++|++.++|.+++.+.+...
T Consensus 305 ~~~~~~d~~ls~lPl~H~~~~-~~~~~~l~~G~~v~~~---~~~~l~~~~~~~~~~l~~~~pT~~~~vP~~~~~l~~~~~ 380 (700)
T PTZ00216 305 GPPEEDETYCSYLPLAHIMEF-GVTNIFLARGALIGFG---SPRTLTDTFARPHGDLTEFRPVFLIGVPRIFDTIKKAVE 380 (700)
T ss_pred CCCCCCCEEEEEChHHHHHHH-HHHHHHHHcCCEEEEC---CHHHhhhhhccccchHHHcCCcEEEechHHHHHHHHHHH
Confidence 1 3578999999999999998 4555668888888774 3555554 6889999999999999988764311
Q ss_pred C-------------------------Ccc----------------CCCCceEEEeecccCCHHHHHHHHHhCCCCccccc
Q 019348 303 V-------------------------RKF----------------DISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQK 341 (342)
Q Consensus 303 ~-------------------------~~~----------------~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~ 341 (342)
. ... ..+++|.+++||+++++++.+.++..++ +++++
T Consensus 381 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~lr~i~~GGa~l~~~~~~~~~~~~~--~l~~~ 458 (700)
T PTZ00216 381 AKLPPVGSLKRRVFDHAYQSRLRALKEGKDTPYWNEKVFSAPRAVLGGRVRAMLSGGGPLSAATQEFVNVVFG--MVIQG 458 (700)
T ss_pred HHHhccCHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhCCcEEEEEECCCCCCHHHHHHHHHHhh--hHhhc
Confidence 0 000 0158999999999999999987777664 88888
Q ss_pred C
Q 019348 342 I 342 (342)
Q Consensus 342 Y 342 (342)
|
T Consensus 459 Y 459 (700)
T PTZ00216 459 W 459 (700)
T ss_pred c
Confidence 7
No 67
>PRK10252 entF enterobactin synthase subunit F; Provisional
Probab=100.00 E-value=2.6e-38 Score=323.22 Aligned_cols=287 Identities=19% Similarity=0.255 Sum_probs=242.1
Q ss_pred CCHHHHHhhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeE
Q 019348 27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA 106 (342)
Q Consensus 27 ~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~ 106 (342)
.++.++|.+.++.+||++|+++. ++.+||+||.++++++|+.|.+.|+++||+|+++++|+.+++++++||+++|+++
T Consensus 458 ~~l~~~~~~~~~~~p~~~Al~~~--~~~~Ty~eL~~~~~~la~~L~~~g~~~g~~V~l~~~~~~~~i~~~la~~~~G~~~ 535 (1296)
T PRK10252 458 TTLSALVAQQAAKTPDAPALADA--RYQFSYREMREQVVALANLLRERGVKPGDSVAVALPRSVFLTLALHAIVEAGAAW 535 (1296)
T ss_pred CCHHHHHHHHHHhCCCCeEEEcC--CCcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEE
Confidence 58999999999999999999987 7899999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhccCCCeEEecCCCccccccccccccccccHHHHHhccCCCCCCCC
Q 019348 107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPD 186 (342)
Q Consensus 107 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (342)
+|++|..+.+++.++++.+++++++++.+....+.......+ .. +....... .....
T Consensus 536 vpld~~~p~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~-~~-------------------~~~~~~~~---~~~~~ 592 (1296)
T PRK10252 536 LPLDTGYPDDRLKMMLEDARPSLLITTADQLPRFADVPDLTS-LC-------------------YNAPLAPQ---GAAPL 592 (1296)
T ss_pred EecCccCHHHHHHHHHHhCCCCEEEECcchhhhcccCCCcee-ee-------------------cccccccc---cCCCC
Confidence 999999999999999999999999998876555433210000 00 00000000 01111
Q ss_pred CCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHHHHHHHHhhcCCeEEE
Q 019348 187 VSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVS 266 (342)
Q Consensus 187 ~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~ 266 (342)
....++++++|+|||||||.||||+++|+++.+.+.. ....+.+.++|++++..|++|..++ ..++.+|..|+++++
T Consensus 593 ~~~~~~~~a~i~~TSGSTG~PKgV~~~h~~l~~~~~~--~~~~~~~~~~d~~l~~~~~~fd~~~-~~~~~~l~~G~~l~~ 669 (1296)
T PRK10252 593 QLSQPHHTAYIIFTSGSTGRPKGVMVGQTAIVNRLLW--MQNHYPLTADDVVLQKTPCSFDVSV-WEFFWPFIAGAKLVM 669 (1296)
T ss_pred CCCCCCCeEEEEECCCCCCCCCEEEeccHHHHHHHHH--HHHhcCCCCCCEEEEeCCcchhhhH-HHHHHHHhCCCEEEE
Confidence 2235789999999999999999999999999988544 5556667889999999999999988 788999999999999
Q ss_pred cc---CCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCc--cCCCCceEEEeecccCCHHHHHHHHHhCCCCccccc
Q 019348 267 MG---KFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRK--FDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQK 341 (342)
Q Consensus 267 ~~---~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~--~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~ 341 (342)
.+ ..++..+++.++++++|++.++|+++..+++...... ..++++|.+++||+++++++.++|++.++ +++++.
T Consensus 670 ~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~l~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~-~~l~n~ 748 (1296)
T PRK10252 670 AEPEAHRDPLAMQQFFAEYGVTTTHFVPSMLAAFVASLTPEGARQSCASLRQVFCSGEALPADLCREWQQLTG-APLHNL 748 (1296)
T ss_pred CChhccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhhhccccccccCCCccEEEEecCCCCHHHHHHHHhcCC-CEEEeC
Confidence 86 3589999999999999999999999999987643322 35689999999999999999999999886 899998
Q ss_pred C
Q 019348 342 I 342 (342)
Q Consensus 342 Y 342 (342)
|
T Consensus 749 Y 749 (1296)
T PRK10252 749 Y 749 (1296)
T ss_pred C
Confidence 8
No 68
>PRK07798 acyl-CoA synthetase; Validated
Probab=100.00 E-value=3e-38 Score=295.26 Aligned_cols=304 Identities=22% Similarity=0.295 Sum_probs=240.8
Q ss_pred CCHHHHHhhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeE
Q 019348 27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA 106 (342)
Q Consensus 27 ~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~ 106 (342)
+|+.+++.+.++++||++|+.+. ++.+||.||.++++++|+.|.+.|+++||+|+++++|+++++++++||+++|+++
T Consensus 3 ~~l~~~~~~~a~~~p~~~a~~~~--~~~~ty~el~~~~~~la~~L~~~g~~~~~~v~v~~~n~~~~~~~~~a~~~~G~~~ 80 (533)
T PRK07798 3 WNIADLFEAVADAVPDRVALVCG--DRRLTYAELEERANRLAHYLIAQGLGPGDHVGIYARNRIEYVEAMLGAFKARAVP 80 (533)
T ss_pred ccHHHHHHHHHHhCCCceEEEEC--CceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCeEE
Confidence 68999999999999999999997 8899999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhccC-----CC-eEEecCCCccccccccccccccccHHHHHhccCC
Q 019348 107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN-----LP-AVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGS 180 (342)
Q Consensus 107 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (342)
+++++.++.+++.++++.+++++++++.+....+.+.. .. .+.++.... .....+...+++.+....
T Consensus 81 v~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~- 153 (533)
T PRK07798 81 VNVNYRYVEDELRYLLDDSDAVALVYEREFAPRVAEVLPRLPKLRTLVVVEDGSG------NDLLPGAVDYEDALAAGS- 153 (533)
T ss_pred EecCcCCCHHHHHHHHhhcCCCEEEEchhhHHHHHHHhccCCCccEEEEecCCcc------cccCCccccHHHHHhccC-
Confidence 99999999999999999999999999987666554432 11 222221110 011113445666655433
Q ss_pred CCCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhh-------hccc------cCCCeEEEEccchhHH
Q 019348 181 VTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAH-------QELV------GELDHVVLCVLPMFHV 247 (342)
Q Consensus 181 ~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~-------~~~~------~~~~d~~~~~~p~~~~ 247 (342)
......... .+.++|+|||||||.||+|+++|.++.......... .... ...+++++...|++|.
T Consensus 154 -~~~~~~~~~-~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~ 231 (533)
T PRK07798 154 -PERDFGERS-PDDLYLLYTGGTTGMPKGVMWRQEDIFRVLLGGRDFATGEPIEDEEELAKRAAAGPGMRRFPAPPLMHG 231 (533)
T ss_pred -CcCCCCCCC-CCceEEEECCCCCCCCcEEEEecHHHHHHHhhhhhhhcccchhhhhhhcccccCCCCceEEEecchhhh
Confidence 111111222 345689999999999999999999987653221100 0000 1456899999999999
Q ss_pred HHHHHHHHHHhhcCCeEEEcc--CCCHHHHHHHHHhccceEEEecHHHHH-HHHcCCC-CCccCCCCceEEEeecccCCH
Q 019348 248 FGLSVILYDQLQKGNCVVSMG--KFDIEMALRAIEKYRVTVWWVVPPIIL-ALAKNSL-VRKFDISSLKLVGSGAAPLGK 323 (342)
Q Consensus 248 ~g~~~~~~~~l~~G~~~v~~~--~~~~~~~~~~i~~~~~t~~~~~P~~l~-~l~~~~~-~~~~~l~~lr~~~~gG~~l~~ 323 (342)
.++ ..++.++..|+++++.+ .+++..+++.++++++|.+.++|..+. .+..... ....+++++|.+++||+++++
T Consensus 232 ~~~-~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~i~~gG~~~~~ 310 (533)
T PRK07798 232 AGQ-WAAFAALFSGQTVVLLPDVRFDADEVWRTIEREKVNVITIVGDAMARPLLDALEARGPYDLSSLFAIASGGALFSP 310 (533)
T ss_pred hhH-HHHHHHHhcCceEEEecCCCcCHHHHHHHHHHhCCeEEEechHHHHHHHHHHhcccccCCCCceEEEEECCCCCCH
Confidence 999 68899999999999998 789999999999999999999986553 3333322 234568899999999999999
Q ss_pred HHHHHHHHhCCCCcccccC
Q 019348 324 ELMEDCQKNIPGATIFQKI 342 (342)
Q Consensus 324 ~~~~~~~~~~~~~~l~~~Y 342 (342)
++.++|++.+++..+++.|
T Consensus 311 ~~~~~~~~~~~~~~~~~~Y 329 (533)
T PRK07798 311 SVKEALLELLPNVVLTDSI 329 (533)
T ss_pred HHHHHHHHHcCCCeEEeee
Confidence 9999999999778898887
No 69
>PRK07514 malonyl-CoA synthase; Validated
Probab=100.00 E-value=8e-38 Score=290.42 Aligned_cols=294 Identities=24% Similarity=0.334 Sum_probs=245.3
Q ss_pred CCHHHHHhhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeE
Q 019348 27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA 106 (342)
Q Consensus 27 ~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~ 106 (342)
.+|.+++.+++ .+|++.|+.+.+ ++.+||.||.+++.++|..|++.|+++||+|+++++|+.+++++++||+++|+++
T Consensus 3 ~~l~~~~~~~~-~~~~~~a~~~~~-~~~~Ty~eL~~~~~~la~~L~~~g~~~gd~v~i~~~~~~e~~v~~la~~~~G~~~ 80 (504)
T PRK07514 3 NNLFDALRAAF-ADRDAPFIETPD-GLRYTYGDLDAASARLANLLVALGVKPGDRVAVQVEKSPEALALYLATLRAGAVF 80 (504)
T ss_pred ccHHHHHHHHh-hCCCCeEEEeCC-CCEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEE
Confidence 58999999999 999999998743 6899999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhccC----CC-eEEecCCCccccccccccccccccHHHHHhccCCC
Q 019348 107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN----LP-AVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSV 181 (342)
Q Consensus 107 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (342)
+|+++..+.+++..+++.++++++++++.....+.... .. .+.++... ...+.+......
T Consensus 81 v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~-- 145 (504)
T PRK07514 81 LPLNTAYTLAELDYFIGDAEPALVVCDPANFAWLSKIAAAAGAPHVETLDADG-------------TGSLLEAAAAAP-- 145 (504)
T ss_pred EECCCCCCHHHHHHHHHhCCCcEEEEccchhHHHHHhhhccCCceEEEecCCC-------------cccHHHhhhhcC--
Confidence 99999999999999999999999999987765544331 11 22222110 011112211111
Q ss_pred CCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHHHHHHHHhhcC
Q 019348 182 TDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKG 261 (342)
Q Consensus 182 ~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G 261 (342)
..........+++++|+|||||||.||+|.++|+++...+.. .........+|++++..|++|..++...++.++..|
T Consensus 146 ~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~--~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G 223 (504)
T PRK07514 146 DDFETVPRGADDLAAILYTSGTTGRSKGAMLSHGNLLSNALT--LVDYWRFTPDDVLIHALPIFHTHGLFVATNVALLAG 223 (504)
T ss_pred cccCcccCCCCCeEEEEECCCCCCCCcEEEEecHHHHHHHHH--HHHHhCCCCccEEEEecchHHHHHHHHHHHHHHhcC
Confidence 112223456789999999999999999999999999988544 344455678899999999999999877889999999
Q ss_pred CeEEEccCCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCCHHHHHHHHHhCCCCccccc
Q 019348 262 NCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQK 341 (342)
Q Consensus 262 ~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~ 341 (342)
+++++.+..++..+++.+ .++|++..+|.++..++.........++++|.+++||+++++++.+.|++.++ .++++.
T Consensus 224 ~~~~~~~~~~~~~~~~~i--~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~~-~~~~~~ 300 (504)
T PRK07514 224 ASMIFLPKFDPDAVLALM--PRATVMMGVPTFYTRLLQEPRLTREAAAHMRLFISGSAPLLAETHREFQERTG-HAILER 300 (504)
T ss_pred cEEEECCCCCHHHHHHHH--HhheeeecHHHHHHHHHcCCCCCcccccceeeEEecCCCCCHHHHHHHHHHhC-Ccceee
Confidence 999999999999999999 47999999999999999887666677899999999999999999999999987 788887
Q ss_pred C
Q 019348 342 I 342 (342)
Q Consensus 342 Y 342 (342)
|
T Consensus 301 Y 301 (504)
T PRK07514 301 Y 301 (504)
T ss_pred c
Confidence 7
No 70
>COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=2.4e-39 Score=269.63 Aligned_cols=298 Identities=25% Similarity=0.322 Sum_probs=250.5
Q ss_pred CCHHHHHhhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeE
Q 019348 27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA 106 (342)
Q Consensus 27 ~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~ 106 (342)
.++.+.+.+++.++||++|++++ ++.+||+||.++++++|..|++.|+++||+|.+.+||..+|++++||++++|+.+
T Consensus 28 ~~l~d~L~~~A~~~pdriAv~d~--~~~~sY~eLdqr~d~LAa~l~~lGi~~Gd~vlvQLpN~~ef~~~~FALlrlGv~P 105 (542)
T COG1021 28 RTLTDILTDHAARYPDRIAVIDG--ERRLSYAELDQRADRLAAGLRRLGIKPGDTVLVQLPNVAEFYITFFALLRLGVAP 105 (542)
T ss_pred CcHHHHHHHHHhhcCCceEEecC--cccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCchHHHHHHHHHHHHcCcch
Confidence 79999999999999999999998 8889999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCHHHHHHHhhhcCceEEEEcccchh-----hhhc----c-CCCeEEecCCCccccccccccccccccHHHHHh
Q 019348 107 STANPVYTVSELSKQVKDSNPKLVITVPELWD-----KVKD----L-NLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIE 176 (342)
Q Consensus 107 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~-----~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (342)
|.--|.....||.+..+.+.++.+|+++.... ...+ . ..+.+.+..... .....+..+-.
T Consensus 106 VlALpsHr~~Ei~~f~~~~e~~~~i~~~~~~gFd~~~~ar~~~a~~~tlr~v~v~ge~~----------~~~~~~~~~~~ 175 (542)
T COG1021 106 VLALPSHRASELGAFASQIEAALLIVARQHSGFDYRPFARELVAKHPTLRHVIVAGEAE----------HPSVLEAALCH 175 (542)
T ss_pred hhccchhhHHHHHHHHHhhcchheeechhhcccCcHHHHHHHHhhCCcceEEEEccCCC----------CcchhhhhhhC
Confidence 99999999999999999999999998754322 1111 1 234555543211 00011111211
Q ss_pred ccCCCCCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHHH-HHH
Q 019348 177 LSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSV-ILY 255 (342)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~-~~~ 255 (342)
... ...+.....++++++.+.+.||||.||.+..||.....+... ....-.++...+++|.+|..|-+.+.. +++
T Consensus 176 ~a~--~~~~a~~~~~~~vA~fqLSGGTTGtPKLIPRtH~DY~Ysv~a--SaEiC~~~~~tvyL~~LP~AHNfplssPG~L 251 (542)
T COG1021 176 PAG--LFTPAPPADAGEVAFFQLSGGTTGTPKLIPRTHNDYYYSVRA--SAEICGFDQQTVYLCALPAAHNFPLSSPGAL 251 (542)
T ss_pred ccc--cCCcCCCCCCCceEEEEecCCCCCCCccccccccceeeeeee--hhhhhCcCccceEEEecccccCCCCCCcchh
Confidence 111 222345667788999999999999999999999998887554 444555688999999999999887733 489
Q ss_pred HHhhcCCeEEEccCCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCCHHHHHHHHHhCCC
Q 019348 256 DQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPG 335 (342)
Q Consensus 256 ~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~ 335 (342)
..+..|+++|+.++.+|...+.+|++++||+..++|.+...|++..+....+++|||.+-+||+.+++.+.++....+|
T Consensus 252 Gv~~agG~VVla~~psp~~~F~lIerh~Vt~tALVPpla~LWlqa~e~~~~~LsSLrllQVGGarl~~~~Arrv~~~lg- 330 (542)
T COG1021 252 GVFLAGGTVVLAPDPSPELCFPLIERHGVTVTALVPPLASLWLQAAEWERADLSSLRLLQVGGARLSATLARRVPAVLG- 330 (542)
T ss_pred heeeeccEEEECCCCCHHHHHHHHHHhccceEEeccHHHHHHHHhhhcccCCchheeEEeecCcccCHHHHhhchhhhC-
Confidence 9999999999999999999999999999999999999999999999888899999999999999999999999999998
Q ss_pred Cccccc
Q 019348 336 ATIFQK 341 (342)
Q Consensus 336 ~~l~~~ 341 (342)
+.+.+.
T Consensus 331 C~LQQV 336 (542)
T COG1021 331 CQLQQV 336 (542)
T ss_pred chHHHH
Confidence 877664
No 71
>PRK12467 peptide synthase; Provisional
Probab=100.00 E-value=1.7e-38 Score=346.14 Aligned_cols=290 Identities=20% Similarity=0.278 Sum_probs=246.0
Q ss_pred CCHHHHHhhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeE
Q 019348 27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA 106 (342)
Q Consensus 27 ~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~ 106 (342)
.++.++|.+.++++|+++|+++. ++.+||+||.++++++|+.|.+.|+++|++|+++++++++++++++||+++|+++
T Consensus 1574 ~~~~~~~~~~a~~~p~~~Av~~~--~~~lTY~eL~~~a~~lA~~L~~~Gv~~~~~V~l~~~~s~~~vv~~lavlkaG~~~ 1651 (3956)
T PRK12467 1574 RLVHQLIEDQAAATPEAVALVFG--EQELTYGELNRRANRLAHRLIALGVGPEVLVGIAVERSLEMVVGLLAILKAGGAY 1651 (3956)
T ss_pred ccHHHHHHHHHHhCCCCeEEEeC--CcEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCCHHHHHHHHHhhccCcee
Confidence 68999999999999999999987 7899999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhccC-CCeEEecCCCccccccccccccccccHHHHHhccCCCCCCC
Q 019348 107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN-LPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIP 185 (342)
Q Consensus 107 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (342)
+|++|.++.+++.++++++++++++++......+.... ...+.++.. ..+..... ....
T Consensus 1652 vpldp~~p~~rl~~il~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~--~~~~ 1711 (3956)
T PRK12467 1652 VPLDPEYPRERLAYMIEDSGIELLLTQSHLQARLPLPDGLRSLVLDQE------------------DDWLEGYS--DSNP 1711 (3956)
T ss_pred eecCCCCCHHHHHHHHHhCCCCEEEeChhhhhhCccccCCcEEEeccc------------------cchhccCC--CCCC
Confidence 99999999999999999999999999877655443221 222322211 01111111 1112
Q ss_pred CCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHHHHHHHHhhcCCeEE
Q 019348 186 DVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVV 265 (342)
Q Consensus 186 ~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v 265 (342)
.....++++++|+|||||||+||||+++|+++.+.+.. ....+.+..+|++++..|++|..++ ..++.+|..|++++
T Consensus 1712 ~~~~~~~~~ayiiyTSGSTG~PKGV~~th~~l~~~~~~--~~~~~~~~~~d~~l~~~~~~fd~~~-~~~~~~L~~G~~lv 1788 (3956)
T PRK12467 1712 AVNLAPQNLAYVIYTSGSTGRPKGAGNRHGALVNRLCA--TQEAYQLSAADVVLQFTSFAFDVSV-WELFWPLINGARLV 1788 (3956)
T ss_pred CCCCCCcCcEEEEECCCcCCCCCEEEEcCHHHHHHHHH--HHHhcCCCcccEEEEecCccHHHHH-HHHHHHHhCCCEEE
Confidence 23456789999999999999999999999999988544 4555667789999999999999998 78999999999999
Q ss_pred EccC---CCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCCHHHHHHHHHhCCCCcccccC
Q 019348 266 SMGK---FDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQKI 342 (342)
Q Consensus 266 ~~~~---~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~Y 342 (342)
+.++ .++..+++.|+++++|++.++|++++.|.+... ....+++||.+++|||++++++.++|.+.+++.+++|+|
T Consensus 1789 i~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~-~~~~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~Y 1867 (3956)
T PRK12467 1789 IAPPGAHRDPEQLIQLIERQQVTTLHFVPSMLQQLLQMDE-QVEHPLSLRRVVCGGEALEVEALRPWLERLPDTGLFNLY 1867 (3956)
T ss_pred EcChhhcCCHHHHHHHHHHcCCeEEECCHHHHHHHHhhcc-ccccCCCceEEEEccccCCHHHHHHHHHhCCCCeEEeCc
Confidence 9864 579999999999999999999999999987532 234678999999999999999999999999878899998
No 72
>PRK06188 acyl-CoA synthetase; Validated
Probab=100.00 E-value=1.2e-37 Score=290.41 Aligned_cols=296 Identities=24% Similarity=0.318 Sum_probs=241.9
Q ss_pred CCHHHHHhhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeE
Q 019348 27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA 106 (342)
Q Consensus 27 ~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~ 106 (342)
.|+.++|.+.++++|+++|+++. ++.+||+||.+.+.+++..|.+.|+++|++|+++++|+.+++++++||+++|+++
T Consensus 12 ~~~~~~~~~~~~~~~~~~a~~~~--~~~~Ty~~l~~~~~~~a~~L~~~gv~~~~~V~i~~~~~~~~~~~~la~~~~G~~~ 89 (524)
T PRK06188 12 ATYGHLLVSALKRYPDRPALVLG--DTRLTYGQLADRISRYIQAFEALGLGTGDAVALLSLNRPEVLMAIGAAQLAGLRR 89 (524)
T ss_pred ccHHHHHHHHHHHCCCCeEEEEC--CCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCCEE
Confidence 68999999999999999999987 7899999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCHHHHHHHhhhcCceEEEEccc-chhhhhccC-----CCeEEecCCCccccccccccccccccHHHHHhccCC
Q 019348 107 STANPVYTVSELSKQVKDSNPKLVITVPE-LWDKVKDLN-----LPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGS 180 (342)
Q Consensus 107 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~-~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (342)
++++|..+.+++.++++.++++.+++++. ......... ...+...... .....+.+......
T Consensus 90 v~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~- 157 (524)
T PRK06188 90 TALHPLGSLDDHAYVLEDAGISTLIVDPAPFVERALALLARVPSLKHVLTLGPV-----------PDGVDLLAAAAKFG- 157 (524)
T ss_pred EecccCCCHHHHHHHHHhcCceEEEEecchhhHHHHHHhhhcCCceEEEEeCCc-----------cchhhHHHhhhccC-
Confidence 99999999999999999999999999876 333222211 1111111110 00011111111111
Q ss_pred CCCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHHHHHHHHhhc
Q 019348 181 VTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQK 260 (342)
Q Consensus 181 ~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~ 260 (342)
.........++++++|+|||||||.||+|.++|.++...+.. ....+....+|++++..|++|..++ .++.++..
T Consensus 158 -~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~l~~~~~~--~~~~~~~~~~~~~l~~~pl~~~~g~--~~~~~l~~ 232 (524)
T PRK06188 158 -PAPLVAAALPPDIAGLAYTGGTTGKPKGVMGTHRSIATMAQI--QLAEWEWPADPRFLMCTPLSHAGGA--FFLPTLLR 232 (524)
T ss_pred -cccccccCCCCCeEEEEeCCCCCCCCceeeeehHHHHHHHHH--HHhhcCCCcCcEEEEecCchhhhhH--HHHHHHHc
Confidence 111112233456999999999999999999999999987554 4445556788999999999999886 35788999
Q ss_pred CCeEEEccCCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCCHHHHHHHHHhCCCCcccc
Q 019348 261 GNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQ 340 (342)
Q Consensus 261 G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~ 340 (342)
|+++++.+.+++..+++.++++++|+++++|+++..+++.......+++++|.+++||++++++..+.+.+.++ ..+++
T Consensus 233 G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gg~~~~~~~~~~~~~~~~-~~~~~ 311 (524)
T PRK06188 233 GGTVIVLAKFDPAEVLRAIEEQRITATFLVPTMIYALLDHPDLRTRDLSSLETVYYGASPMSPVRLAEAIERFG-PIFAQ 311 (524)
T ss_pred CCEEEEcCCCCHHHHHHHHHHhCCEEEEehHHHHHHHHhCcCccCCCCcceeEEEEcCCCCCHHHHHHHHHHhC-chhhh
Confidence 99999999999999999999999999999999999999988766778999999999999999999999999887 77877
Q ss_pred cC
Q 019348 341 KI 342 (342)
Q Consensus 341 ~Y 342 (342)
.|
T Consensus 312 ~Y 313 (524)
T PRK06188 312 YY 313 (524)
T ss_pred ee
Confidence 76
No 73
>TIGR03205 pimA dicarboxylate--CoA ligase PimA. PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids.
Probab=100.00 E-value=2.9e-37 Score=288.85 Aligned_cols=311 Identities=27% Similarity=0.412 Sum_probs=243.5
Q ss_pred CCHHHHHhhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeE
Q 019348 27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA 106 (342)
Q Consensus 27 ~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~ 106 (342)
.++.++|.+.++.+|+++|+.+. ++.+||.||.++++++|..|.+.|+++||+|+++++|+.+++++++||+++|+++
T Consensus 21 ~~~~~~~~~~~~~~p~~~a~~~~--~~~~ty~el~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~la~~~~G~~~ 98 (541)
T TIGR03205 21 GTLPDLLSKAAADYGPRPALEFR--DRPITYTELEAMAETAAAALLRAGYGKDASVALYLGNTPDHPINFFGALKAGARV 98 (541)
T ss_pred CCHHHHHHHHHHHcCCCceEEEC--CcEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHhcCeEE
Confidence 48999999999999999999986 7899999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCHHHHHHHhhhcCceEEEEcccch--hhhhc---cC-CC-eEEecCCCccccc---cccccccccccHHHHHh
Q 019348 107 STANPVYTVSELSKQVKDSNPKLVITVPELW--DKVKD---LN-LP-AVLLGSKDKVSSS---GLISRSSKIVSFHDLIE 176 (342)
Q Consensus 107 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~--~~~~~---~~-~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 176 (342)
+|++|..+.+++.++++.++++++++++... ....+ .. .. .+........... ...........+.+++.
T Consensus 99 v~l~~~~~~~~l~~~i~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (541)
T TIGR03205 99 VHLSPLDGERALSHKLSDSGARLLITSDLAALLPMALKFLEKGLLDRLIVCEDDNWGKVGTPQAPIPADPRIVTYADFVK 178 (541)
T ss_pred EecCCCCCHHHHHHHHhhcCceEEEEeCchhhhHHHHHhhhcccceEEEEecccccccccccccccCCCcccccHHHHHh
Confidence 9999999999999999999999999985321 11111 01 11 1222211000000 00011122345566554
Q ss_pred ccCCCCCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhh---ccccCCCeEEEEccchhHHHHHHHH
Q 019348 177 LSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQ---ELVGELDHVVLCVLPMFHVFGLSVI 253 (342)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~---~~~~~~~d~~~~~~p~~~~~g~~~~ 253 (342)
... .........+++.++++|||||||.||+|+++|+++........... .......+++++..|++|.+++...
T Consensus 179 ~~~--~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~ 256 (541)
T TIGR03205 179 GAA--APAEWPAVTPDDVALLQYTGGTTGLPKGAMLTHGNLTSAVSIYDVWGKPSRATRGDVERVICVLPLFHIYALTVI 256 (541)
T ss_pred cCC--CCCCCCCCCccCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHhhcccccccCCCCceEEEeccHHHHHHHHHH
Confidence 322 12222345678999999999999999999999999876532211110 1112345789999999999998777
Q ss_pred HHHHhhcCCeEEEccCCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCCHHHHHHHHHhC
Q 019348 254 LYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNI 333 (342)
Q Consensus 254 ~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~ 333 (342)
++.++..|+++++...+++..+++.++++++|++.++|.++..|++.......+++++|.++.||+++++++.+++++.+
T Consensus 257 ~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~i~~gg~~~~~~~~~~~~~~~ 336 (541)
T TIGR03205 257 LLRSLRRGDLISLHQRFDVAAVFRDIEEKRATVFPGVPTMWIALANDPSLEKRDLSSLATIGSGGAPLPVEVANFFERKT 336 (541)
T ss_pred HHHHHhcCCEEEecCCCCHHHHHHHHHHcCCeEeechHHHHHHHHhCccccccCccccceEEEccccCCHHHHHHHHHHh
Confidence 88999999999999889999999999999999999999999999876554556788999999999999999999999888
Q ss_pred CCCcccccC
Q 019348 334 PGATIFQKI 342 (342)
Q Consensus 334 ~~~~l~~~Y 342 (342)
+ +++++.|
T Consensus 337 ~-~~~~~~Y 344 (541)
T TIGR03205 337 G-LKLKSGW 344 (541)
T ss_pred C-CCeeccc
Confidence 7 8888887
No 74
>PRK12316 peptide synthase; Provisional
Probab=100.00 E-value=2.9e-38 Score=349.20 Aligned_cols=289 Identities=17% Similarity=0.233 Sum_probs=246.4
Q ss_pred CCHHHHHhhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeE
Q 019348 27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA 106 (342)
Q Consensus 27 ~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~ 106 (342)
.++.++|.+.++++||++|+++. ++++||+||.++++++|+.|.+.|+++|++|+++++|+.+++++++||+++|+++
T Consensus 511 ~~~~~~~~~~a~~~p~~~A~~~~--~~~~TY~eL~~~~~~lA~~L~~~gv~~g~~V~l~~~~s~~~i~~~la~~~aG~~~ 588 (5163)
T PRK12316 511 RGVHRLFEEQVERTPEAPALAFG--EETLDYAELNRRANRLAHALIERGVGPDVLVGVAMERSIEMVVALLAILKAGGAY 588 (5163)
T ss_pred CCHHHHHHHHHHHCCCCeEEEeC--CceEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHcCCEE
Confidence 68999999999999999999987 7899999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhcc-CCCeEEecCCCccccccccccccccccHHHHHhccCCCCCCC
Q 019348 107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDL-NLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIP 185 (342)
Q Consensus 107 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (342)
+|++|.++.+++.++++.+++++++++......+... ....+.++.. ........ ....
T Consensus 589 vpld~~~p~~rl~~il~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~--~~~~ 648 (5163)
T PRK12316 589 VPLDPEYPAERLAYMLEDSGVQLLLSQSHLGRKLPLAAGVQVLDLDRP------------------AAWLEGYS--EENP 648 (5163)
T ss_pred eccCccCcHHHHHHHHHhCCCCEEEEChhhhhhCCcccCceEEEecCc------------------chhhccCC--CCCC
Confidence 9999999999999999999999999987665443322 1222222211 00111111 1122
Q ss_pred CCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHHHHHHHHhhcCCeEE
Q 019348 186 DVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVV 265 (342)
Q Consensus 186 ~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v 265 (342)
.....++++++|+|||||||.||||+++|+++.+.+.. ....+++..+|++++..|++|..++ ..++.+|..|++++
T Consensus 649 ~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~--~~~~~~~~~~d~~l~~~p~~fd~~~-~~~~~~L~~G~~l~ 725 (5163)
T PRK12316 649 GTELNPENLAYVIYTSGSTGKPKGAGNRHRALSNRLCW--MQQAYGLGVGDTVLQKTPFSFDVSV-WEFFWPLMSGARLV 725 (5163)
T ss_pred CCCCCCCCeEEEEECCCcCCCCCEeeEcCHHHHHHHHH--HHHhcCCCCCCEEEeeCCeehHHHH-HHHHHHHhCCCEEE
Confidence 23456789999999999999999999999999988554 4556667889999999999999998 78999999999999
Q ss_pred Ecc---CCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCCHHHHHHHHHhCCCCcccccC
Q 019348 266 SMG---KFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQKI 342 (342)
Q Consensus 266 ~~~---~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~Y 342 (342)
+.+ .+++..+++.++++++|++.++|++++.|++... ..++++||.+++||+++++++.++|++.+++++++|.|
T Consensus 726 i~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~--~~~~~~l~~~~~gGe~l~~~~~~~~~~~~~~~~l~n~Y 803 (5163)
T PRK12316 726 VAAPGDHRDPAKLVELINREGVDTLHFVPSMLQAFLQDED--VASCTSLRRIVCSGEALPADAQEQVFAKLPQAGLYNLY 803 (5163)
T ss_pred ECCccccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhccc--cccCCCccEEEEeeccCCHHHHHHHHHhCCCCeEEeCc
Confidence 985 3789999999999999999999999999987642 34688999999999999999999999998889999998
No 75
>PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated
Probab=100.00 E-value=2.4e-37 Score=287.97 Aligned_cols=304 Identities=22% Similarity=0.272 Sum_probs=245.0
Q ss_pred CCHHHHHhhhcccCCCceEEEeCC---CCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhC
Q 019348 27 FSMVHFLFRNSASYSSKLALIDAD---SDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIG 103 (342)
Q Consensus 27 ~~l~~~l~~~~~~~p~~~a~~~~~---~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G 103 (342)
.++.++|.+.++++||++|+++.+ +.+.+||.||.++++++|+.|.+.|+++||+|+++++|+.+++++++||+++|
T Consensus 7 ~~l~~~~~~~a~~~p~~~a~~~~~~~~~~~~~ty~~l~~~v~~la~~L~~~g~~~~~~v~i~~~n~~~~~~~~la~~~~G 86 (517)
T PRK08008 7 QHLRQMWDDLADVYGHKTALIFESSGGVVRRYSYLELNEEINRTANLFYSLGIRKGDKVALHLDNCPEFIFCWFGLAKIG 86 (517)
T ss_pred ccHHHHHHHHHHHCCCceEEEcccCCCccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcC
Confidence 589999999999999999998753 23789999999999999999999999999999999999999999999999999
Q ss_pred CeEeccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhccC------CCeEEecCCCccccccccccccccccHHHHHhc
Q 019348 104 AIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN------LPAVLLGSKDKVSSSGLISRSSKIVSFHDLIEL 177 (342)
Q Consensus 104 ~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (342)
+++++++|..+.+++.++++.+++++++++++....+.+.. .+.+.+..... ........+.+....
T Consensus 87 ~~~v~l~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~ 159 (517)
T PRK08008 87 AIMVPINARLLREESAWILQNSQASLLVTSAQFYPMYRQIQQEDATPLRHICLTRVAL-------PADDGVSSFTQLKAQ 159 (517)
T ss_pred eEEEEcCcccCHHHHHHHHHhcCceEEEEecchhHHHHHHHhhccccCcEEEEecCCC-------cccccccCHHHHhcc
Confidence 99999999999999999999999999999987766544331 12222221110 111223344444332
Q ss_pred cCCCCCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHHHHHHHH
Q 019348 178 SGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQ 257 (342)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~ 257 (342)
... .........++++++|+|||||||.||+|++||.++...... .........++++++.+|++|..+....++.+
T Consensus 160 ~~~-~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~--~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 236 (517)
T PRK08008 160 QPA-TLCYAPPLSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYY--SAWQCALRDDDVYLTVMPAFHIDCQCTAAMAA 236 (517)
T ss_pred CCc-cccccCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHH--HhhhcCCCCCCeEEEecCcHHHHHHHHHHHHH
Confidence 211 111123345689999999999999999999999999865322 22233356789999999999988876788999
Q ss_pred hhcCCeEEEccCCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCCHHHHHHHHHhCCCCc
Q 019348 258 LQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGAT 337 (342)
Q Consensus 258 l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~ 337 (342)
+..|+++++.+++++..+++.++++++|++.++|.+++.+............+++.+.+++ ++++...++|.+.++ ++
T Consensus 237 l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~-~~ 314 (517)
T PRK08008 237 FSAGATFVLLEKYSARAFWGQVCKYRATITECIPMMIRTLMVQPPSANDRQHCLREVMFYL-NLSDQEKDAFEERFG-VR 314 (517)
T ss_pred HhcCcEEEEccccCHHHHHHHHHHcCCcEEechHHHHHHHHhCCCccccccccceeeEEec-CCCHHHHHHHHHHhC-Ce
Confidence 9999999999999999999999999999999999999999877654444556788877764 789999999999987 89
Q ss_pred ccccC
Q 019348 338 IFQKI 342 (342)
Q Consensus 338 l~~~Y 342 (342)
+++.|
T Consensus 315 ~~~~Y 319 (517)
T PRK08008 315 LLTSY 319 (517)
T ss_pred EEeec
Confidence 99887
No 76
>TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1. This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides.
Probab=100.00 E-value=6.7e-38 Score=290.79 Aligned_cols=288 Identities=18% Similarity=0.264 Sum_probs=241.3
Q ss_pred CHHHHHhhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeEe
Q 019348 28 SMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIAS 107 (342)
Q Consensus 28 ~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v 107 (342)
++.+.+.+.+..+|+++|+.+. ++.+||+||.+++.++|..|.+.|+++|++|+++++|+.+++++++||+++|++++
T Consensus 1 ~~~~~l~~~a~~~p~~~a~~~~--~~~~ty~el~~~~~~~a~~L~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~v 78 (502)
T TIGR01734 1 KLIEAIQAFAETYPQTIAYRYQ--GQELTYQQLKEQSDRLAAFIQKRILPKKSPIIVYGHMEPHMLVAFLGSIKSGHAYI 78 (502)
T ss_pred CHHHHHHHHHHHCCCceEEEcC--CcEEeHHHHHHHHHHHHHHHHHhCCCCCCeEEEEeCCCHHHHHHHHHHHHhCCEEe
Confidence 5778999999999999999887 78999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhccCCCeEEecCCCccccccccccccccccHHHHHhccCCCCCCCCC
Q 019348 108 TANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDV 187 (342)
Q Consensus 108 ~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (342)
|+++.++.+++.++++..+++.++++++........ ..+.+. .......... ......
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~--~~~~~~------------------~~~~~~~~~~--~~~~~~ 136 (502)
T TIGR01734 79 PVDTSIPSERIEMIIEAAGPELVIHTAELSIDAVGT--QIITLS------------------ALEQAETSGG--PVSFDH 136 (502)
T ss_pred CCCCcChHHHHHHHHHhcCCCEEEecccccccccCC--ceEEch------------------HhhhhhhhcC--Cccccc
Confidence 999999999999999999999999987654332211 111111 0111111111 111112
Q ss_pred CCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHHHHHHHHhhcCCeEEEc
Q 019348 188 SVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSM 267 (342)
Q Consensus 188 ~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~ 267 (342)
...+++.++++|||||||.||+|.++|.++...+.. ....+....++++++..|++|..++ ..++.++..|+++++.
T Consensus 137 ~~~~~~~~~il~TSGTTG~PK~v~~s~~~~~~~~~~--~~~~~~~~~~~~~l~~~p~~~~~~~-~~~~~~l~~G~~~~~~ 213 (502)
T TIGR01734 137 AVKGDDNYYIIYTSGSTGNPKGVQISHDNLVSFTNW--MLADFPLSEGKQFLNQAPFSFDLSV-MDLYPCLASGGTLHCL 213 (502)
T ss_pred cCCCCCeEEEEECCCCCCCCCEEEEecHHHHHHHHH--HHHhCCCCCCceEEeecCceechhH-HHHHHHHHCCCEEEEc
Confidence 345688999999999999999999999999887554 3344556788999999999999988 7889999999999998
Q ss_pred cC---CCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCCHHHHHHHHHhCCCCcccccC
Q 019348 268 GK---FDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQKI 342 (342)
Q Consensus 268 ~~---~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~Y 342 (342)
++ .++..+++.++++++|.+.++|.+++.++.........+++++.++++|+++++++.+.+.+.++++++++.|
T Consensus 214 ~~~~~~~~~~~~~~i~~~~~~~~~~~p~~~~~~l~~~~~~~~~~~~l~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~y 291 (502)
T TIGR01734 214 DKDITNNFKLLFEELPKTGLNVWVSTPSFVDMCLLDPNFNQENYPHLTHFLFCGEELPVKTAKALLERFPKATIYNTY 291 (502)
T ss_pred CHHHhcCHHHHHHHHHHcCCeEEEEChhHHHHHHhccccccccCCcccEEEEcCCcCCHHHHHHHHHHCCCcEEEeCc
Confidence 65 5789999999999999999999999988776555566789999999999999999999999999889999887
No 77
>PRK07059 Long-chain-fatty-acid--CoA ligase; Validated
Probab=100.00 E-value=4.2e-37 Score=288.75 Aligned_cols=317 Identities=23% Similarity=0.366 Sum_probs=247.0
Q ss_pred CCCCCCCHHHHHhhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHH
Q 019348 22 PSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIA 101 (342)
Q Consensus 22 ~~~~~~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~ 101 (342)
+..++.++.++|.+.++++|+++|+++. ++.+||.||.+++.++|..|.+.|+++||+|+++++|+++++++++||++
T Consensus 18 ~~~~~~~i~~~l~~~a~~~p~~~a~~~~--~~~lTy~~l~~~~~~~a~~L~~~gi~~gd~V~i~~~n~~~~~~~~la~~~ 95 (557)
T PRK07059 18 DASQYPSLADLLEESFRQYADRPAFICM--GKAITYGELDELSRALAAWLQSRGLAKGARVAIMMPNVLQYPVAIAAVLR 95 (557)
T ss_pred CCCCCCCHHHHHHHHHHHcCCCceEEEc--CceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHh
Confidence 4444478999999999999999999987 78999999999999999999999999999999999999999999999999
Q ss_pred hCCeEeccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhcc----CCCeEEecCCCccccc---------------ccc
Q 019348 102 IGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDL----NLPAVLLGSKDKVSSS---------------GLI 162 (342)
Q Consensus 102 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~----~~~~~~~~~~~~~~~~---------------~~~ 162 (342)
+|++++|++|..+.+++.++++.++++++++++.....+... ..+.+.+......... ...
T Consensus 96 ~G~~~v~v~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (557)
T PRK07059 96 AGYVVVNVNPLYTPRELEHQLKDSGAEAIVVLENFATTVQQVLAKTAVKHVVVASMGDLLGFKGHIVNFVVRRVKKMVPA 175 (557)
T ss_pred cCeEEeccCcccCHHHHHHHHHccCceEEEEchhhHHHHHHhhcccCCceeEEecccccccccccccccccccccccccc
Confidence 999999999999999999999999999999987765544322 1122222111000000 000
Q ss_pred ccccccccHHHHHhccCCCCCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhh--cccc---CCCeE
Q 019348 163 SRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQ--ELVG---ELDHV 237 (342)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~--~~~~---~~~d~ 237 (342)
....+...+.+.+..... .........++++++|+|||||||.||+|+++|.+++.++....... .+.. .....
T Consensus 176 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~il~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (557)
T PRK07059 176 WSLPGHVRFNDALAEGAR-QTFKPVKLGPDDVAFLQYTGGTTGVSKGATLLHRNIVANVLQMEAWLQPAFEKKPRPDQLN 254 (557)
T ss_pred cCCCCcccHHHHhhccCC-CCCCCCCCCcCceEEEEeCCCCCCCCcEEEeecHHHHHHHHHHhhhhcccccccCCCCCcE
Confidence 011223344544433221 12223345678999999999999999999999999987643321111 1111 13457
Q ss_pred EEEccchhHHHHHHHHHHHHhhcCCeEEEcc-CCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEe
Q 019348 238 VLCVLPMFHVFGLSVILYDQLQKGNCVVSMG-KFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGS 316 (342)
Q Consensus 238 ~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~ 316 (342)
+++..|++|.+++....+.++..|++.++.+ ..++..+++.++++++|.+..+|.+++.+.........+++++|.++.
T Consensus 255 ~~~~~pl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~l~~~~~ 334 (557)
T PRK07059 255 FVCALPLYHIFALTVCGLLGMRTGGRNILIPNPRDIPGFIKELKKYQVHIFPAVNTLYNALLNNPDFDKLDFSKLIVANG 334 (557)
T ss_pred EEEeCCcHHHHHHHHHHHHHHhhcceEEEecCCcCHHHHHHHHHHhCCeeeecCHHHHHHHHcCcCcCcCCchhheEEEe
Confidence 8889999999998667788888998877664 458999999999999999999999999999887666677889999999
Q ss_pred ecccCCHHHHHHHHHhCCCCcccccC
Q 019348 317 GAAPLGKELMEDCQKNIPGATIFQKI 342 (342)
Q Consensus 317 gG~~l~~~~~~~~~~~~~~~~l~~~Y 342 (342)
||+++++.+.++|++.++ +++++.|
T Consensus 335 gg~~~~~~~~~~~~~~~~-~~~~~~Y 359 (557)
T PRK07059 335 GGMAVQRPVAERWLEMTG-CPITEGY 359 (557)
T ss_pred ccccCCHHHHHHHHHHhC-CCeeecc
Confidence 999999999999999887 8999887
No 78
>PRK06710 long-chain-fatty-acid--CoA ligase; Validated
Probab=100.00 E-value=2.3e-37 Score=290.86 Aligned_cols=310 Identities=30% Similarity=0.470 Sum_probs=240.1
Q ss_pred CCHHHHHhhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeE
Q 019348 27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA 106 (342)
Q Consensus 27 ~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~ 106 (342)
.++.+.+.+.+..+|+++|+++. ++.+||+||.+++.++|++|.+.|+++||+|+++++|+.+++++++||+++|+++
T Consensus 24 ~~~~~~~~~~a~~~p~~~a~~~~--~~~~ty~eL~~~~~~la~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~ 101 (563)
T PRK06710 24 QPLHKYVEQMASRYPEKKALHFL--GKDITFSVFHDKVKRFANYLQKLGVEKGDRVAIMLPNCPQAVIGYYGTLLAGGIV 101 (563)
T ss_pred ccHHHHHHHHHHHCCCceEEEec--CeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHHcCeEE
Confidence 47999999999999999999987 7899999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhccC----CCeEEecCCCcccccc--------------c---cccc
Q 019348 107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN----LPAVLLGSKDKVSSSG--------------L---ISRS 165 (342)
Q Consensus 107 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~--------------~---~~~~ 165 (342)
+|++|..+.+++.++++.++++++++++.......... ...+.+.......... . ....
T Consensus 102 vpi~p~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (563)
T PRK06710 102 VQTNPLYTERELEYQLHDSGAKVILCLDLVFPRVTNVQSATKIEHVIVTRIADFLPFPKNLLYPFVQKKQSNLVVKVSES 181 (563)
T ss_pred eccCcccCHHHHHHHHhccCCeEEEEeccchhhhhccchhhccceeEEeccccccccccccccchhhccccccccccccc
Confidence 99999999999999999999999999876544332211 1111111100000000 0 0000
Q ss_pred cccccHHHHHhccCCCCCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhcccc-CCCeEEEEccch
Q 019348 166 SKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVG-ELDHVVLCVLPM 244 (342)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~-~~~d~~~~~~p~ 244 (342)
.....|........ ..........++.++++|||||||.||+|.++|+++...+... ....... ..++++++..|+
T Consensus 182 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~p~ 258 (563)
T PRK06710 182 ETIHLWNSVEKEVN--TGVEVPCDPENDLALLQYTGGTTGFPKGVMLTHKNLVSNTLMG-VQWLYNCKEGEEVVLGVLPF 258 (563)
T ss_pred chhhhhhhhhhccc--cccccccCCCCCEEEEEcCCCCCCCCceEEEehHHHHHHHHHH-HhhccCCCCCCceEEEeCch
Confidence 00011222111111 1111112235789999999999999999999999997553221 1112222 345688999999
Q ss_pred hHHHHHHHHHHHHhhcCCeEEEccCCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCCHH
Q 019348 245 FHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKE 324 (342)
Q Consensus 245 ~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~ 324 (342)
+|.+|+...++.++..|+++++.+.+++..+++.++++++|++.++|+++..++........+++++|.+++||++++++
T Consensus 259 ~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~v~~gg~~~~~~ 338 (563)
T PRK06710 259 FHVYGMTAVMNLSIMQGYKMVLIPKFDMKMVFEAIKKHKVTLFPGAPTIYIALLNSPLLKEYDISSIRACISGSAPLPVE 338 (563)
T ss_pred HHHHHHHHHHHHHHHcCCeEEEcCCCCHHHHHHHHHHcCCeEEeccHHHHHHHHcCCccccCChhhhhheeeCCCcCCHH
Confidence 99999866677899999999999889999999999999999999999999999987655566788999999999999999
Q ss_pred HHHHHHHhCCCCcccccC
Q 019348 325 LMEDCQKNIPGATIFQKI 342 (342)
Q Consensus 325 ~~~~~~~~~~~~~l~~~Y 342 (342)
+.+++++.++ +++++.|
T Consensus 339 ~~~~~~~~~~-~~~~~~Y 355 (563)
T PRK06710 339 VQEKFETVTG-GKLVEGY 355 (563)
T ss_pred HHHHHHHhhC-CCEeccc
Confidence 9999999886 8898887
No 79
>PRK03584 acetoacetyl-CoA synthetase; Provisional
Probab=100.00 E-value=1.9e-37 Score=295.93 Aligned_cols=306 Identities=20% Similarity=0.221 Sum_probs=234.6
Q ss_pred CCHHHHHhhhcccCCCceEEEeCCC---CcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhC
Q 019348 27 FSMVHFLFRNSASYSSKLALIDADS---DESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIG 103 (342)
Q Consensus 27 ~~l~~~l~~~~~~~p~~~a~~~~~~---~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G 103 (342)
.|+.+.+.++ .+|+++|+++.+. .+++||+||.+++.++|+.|++.|+++||+|+++++|++++++++|||+++|
T Consensus 86 ~n~~~~~~~~--~~~~~~Al~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~v~~~lA~~~~G 163 (655)
T PRK03584 86 LNYAENLLRH--RRDDRPAIIFRGEDGPRRELSWAELRRQVAALAAALRALGVGPGDRVAAYLPNIPETVVAMLATASLG 163 (655)
T ss_pred eeHHHHhhcc--CCCCCeEEEEECCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcC
Confidence 5777776653 5799999997532 2689999999999999999999999999999999999999999999999999
Q ss_pred CeEeccCCCCCHHHHHHHhhhcCceEEEEcccchh---------hhh----ccC-C-CeEEecCCCcccccccccccccc
Q 019348 104 AIASTANPVYTVSELSKQVKDSNPKLVITVPELWD---------KVK----DLN-L-PAVLLGSKDKVSSSGLISRSSKI 168 (342)
Q Consensus 104 ~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~---------~~~----~~~-~-~~~~~~~~~~~~~~~~~~~~~~~ 168 (342)
++++|++|.++.+++.++++.++++++|+++.... .+. ... . ..+.+...... .........
T Consensus 164 av~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~~~~~ 240 (655)
T PRK03584 164 AIWSSCSPDFGVQGVLDRFGQIEPKVLIAVDGYRYGGKAFDRRAKVAELRAALPSLEHVVVVPYLGPA---AAAAALPGA 240 (655)
T ss_pred cEEEeeCCCCCHHHHHHHHHHcCCcEEEEccccccCCcccchHHHHHHHHhcCCCccEEEEEecCCCc---ccccccCCc
Confidence 99999999999999999999999999999865321 111 111 1 12222211100 000112223
Q ss_pred ccHHHHHhccCCCCCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHH-hhhhhhhhccccCCCeEEEEccchhHH
Q 019348 169 VSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAA-SLMISAHQELVGELDHVVLCVLPMFHV 247 (342)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~-~~~~~~~~~~~~~~~d~~~~~~p~~~~ 247 (342)
..|.+++..... ..........+++++|+|||||||.||||++||++++.. ... ....+.+..+|++++..++.|+
T Consensus 241 ~~~~~~~~~~~~-~~~~~~~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~--~~~~~~~~~~d~~~~~~~~~~~ 317 (655)
T PRK03584 241 LLWEDFLAPAEA-AELEFEPVPFDHPLWILYSSGTTGLPKCIVHGHGGILLEHLKE--LGLHCDLGPGDRFFWYTTCGWM 317 (655)
T ss_pred ccHHHHhhcccc-CCCCceecCCCCcEEEEecCCCCCCCceEEECccHHHHHHHHH--HHHhcCCCCCCEEEEcCCchHH
Confidence 456666542211 122223456789999999999999999999999987543 222 3334556788999999999887
Q ss_pred HHHHHHHHHHhhcCCeEEEccC----CCHHHHHHHHHhccceEEEecHHHHHHHHcCCC--CCccCCCCceEEEeecccC
Q 019348 248 FGLSVILYDQLQKGNCVVSMGK----FDIEMALRAIEKYRVTVWWVVPPIILALAKNSL--VRKFDISSLKLVGSGAAPL 321 (342)
Q Consensus 248 ~g~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~--~~~~~l~~lr~~~~gG~~l 321 (342)
.+ ..++.+|..|+++++.+. .++..+++.++++++|++.++|++++.+.+... ....++++||.+++||+++
T Consensus 318 ~~--~~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~i~~~Ge~l 395 (655)
T PRK03584 318 MW--NWLVSGLLVGATLVLYDGSPFYPDPNVLWDLAAEEGVTVFGTSAKYLDACEKAGLVPGETHDLSALRTIGSTGSPL 395 (655)
T ss_pred hH--HHHHHHHHcCCEEEEeCCCCCCCCHHHHHHHHHHHCCEEEEcCHHHHHHHHhcCCCccccCChhheEEEEEecCCC
Confidence 54 346789999999999752 589999999999999999999999999876532 2346789999999999999
Q ss_pred CHHHHHHHHHhCC-CCcccccC
Q 019348 322 GKELMEDCQKNIP-GATIFQKI 342 (342)
Q Consensus 322 ~~~~~~~~~~~~~-~~~l~~~Y 342 (342)
++++.+++++.++ ++.+++.|
T Consensus 396 ~~~~~~~~~~~~~~~~~~~~~y 417 (655)
T PRK03584 396 PPEGFDWVYEHVKADVWLASIS 417 (655)
T ss_pred CHHHHHHHHHHhCCCceEEecc
Confidence 9999999999984 57777766
No 80
>PRK07867 acyl-CoA synthetase; Validated
Probab=100.00 E-value=3.8e-37 Score=286.80 Aligned_cols=292 Identities=16% Similarity=0.172 Sum_probs=236.0
Q ss_pred CCHHHHHhhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEECCCCChHHHHHHHHHHhCCe
Q 019348 27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHL-GITKKDVVLIFAPNSIHFPICFLGVIAIGAI 105 (342)
Q Consensus 27 ~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~-g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~ 105 (342)
.++.++|.+.+. ++++++++. ++.+||.||.+++.++|++|++. |++++++|+++++|+++++++++||+++|++
T Consensus 5 ~~~~~~l~~~a~--~~~~a~~~~--~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~V~i~~~n~~~~~~~~lA~~~~G~~ 80 (529)
T PRK07867 5 PTVAELLLPLAE--DDDRGLYFE--DSFTSWREHIRGSAARAAALRARLDPTRPPHVGVLLDNTPEFSLLLGAAALSGIV 80 (529)
T ss_pred ccHHHHHHHhcc--cCCceEEEC--CcEEeHHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCCHHHHHHHHHHHhcCCE
Confidence 578999988775 789999987 78999999999999999999987 8999999999999999999999999999999
Q ss_pred EeccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhccCCCeEEecCCCccccccccccccccccHHHHHhccCCCCCCC
Q 019348 106 ASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIP 185 (342)
Q Consensus 106 ~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (342)
++|+++..+.+++.++++.+++++++++++....+.........+... ...+.+++..... ....
T Consensus 81 ~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~l~~~~~-~~~~ 145 (529)
T PRK07867 81 PVGLNPTRRGAALARDIAHADCQLVLTESAHAELLDGLDPGVRVINVD--------------SPAWADELAAHRD-AEPP 145 (529)
T ss_pred EEEecCCCChHHHHHHHHhCCCeEEEECHhHHHHHHhhccCceEEEec--------------cccHHHHhcccCC-CCCC
Confidence 999999999999999999999999999987766554432111111111 0123443332210 1112
Q ss_pred CCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHHHHHHHHhhcCCeEE
Q 019348 186 DVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVV 265 (342)
Q Consensus 186 ~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v 265 (342)
.....++++++|+|||||||.||+|+++|+++...+.. ....+....+|++++..|++|.+++...++.++..|++++
T Consensus 146 ~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~l~~~~~~--~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~ 223 (529)
T PRK07867 146 FRVADPDDLFMLIFTSGTSGDPKAVRCTHRKVASAGVM--LAQRFGLGPDDVCYVSMPLFHSNAVMAGWAVALAAGASIA 223 (529)
T ss_pred cccCCccceEEEEECCCCCCCCcEEEecHHHHHHHHHH--HHHhhCCCcccEEEEecchhHHHHHHHHHHHHHhcCceEE
Confidence 23456789999999999999999999999999877554 3444556788999999999999998777888999999999
Q ss_pred EccCCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCCHHHHHHHHHhCCCCcccccC
Q 019348 266 SMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQKI 342 (342)
Q Consensus 266 ~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~Y 342 (342)
+.+++++..+++.++++++|++.++|+.+..++..........+++|. ++||+.+++. .++|++.+| +++++.|
T Consensus 224 ~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~ll~~~~~~~~~~~~lr~-~~gg~~~~~~-~~~~~~~~g-~~l~~~Y 297 (529)
T PRK07867 224 LRRKFSASGFLPDVRRYGATYANYVGKPLSYVLATPERPDDADNPLRI-VYGNEGAPGD-IARFARRFG-CVVVDGF 297 (529)
T ss_pred ecCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhCCCcccccccceEE-EecCCCChHH-HHHHHHHhC-CcEEEee
Confidence 999999999999999999999999999999988766433333467884 5688888776 467888886 8999887
No 81
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=100.00 E-value=1.8e-37 Score=313.95 Aligned_cols=303 Identities=22% Similarity=0.322 Sum_probs=246.0
Q ss_pred CCHHHHHhhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeE
Q 019348 27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA 106 (342)
Q Consensus 27 ~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~ 106 (342)
.++.+.+.+.++++||++|+++. .++++||+||.++++++|+.|++ ++++||+|+++++|+++++++++||+++|+++
T Consensus 615 ~~l~~~~~~~a~~~p~~~a~~~~-~~~~~Ty~el~~~~~~~a~~L~~-~~~~g~~V~i~~~n~~~~~~~~la~~~~G~v~ 692 (1146)
T PRK08633 615 PPLAEAWIDTAKRNWSRLAVADS-TGGELSYGKALTGALALARLLKR-ELKDEENVGILLPPSVAGALANLALLLAGKVP 692 (1146)
T ss_pred CCHHHHHHHHHHhcCCCcEEEcC-CCCcCcHHHHHHHHHHHHHHHHH-hCCCCCeEEEECCCchHHHHHHHHHHHcCCEE
Confidence 68999999999999999999975 25799999999999999999987 58999999999999999999999999999999
Q ss_pred eccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhcc------C--CCeEEecCCCccccccccccccccccHHHHHhcc
Q 019348 107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDL------N--LPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELS 178 (342)
Q Consensus 107 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (342)
+|++|..+.+++.++++++++++++++++..+.+... . ...+..+... ........+.+.....
T Consensus 693 v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~ 764 (1146)
T PRK08633 693 VNLNYTASEAALKSAIEQAQIKTVITSRKFLEKLKNKGFDLELPENVKVIYLEDLK--------AKISKVDKLTALLAAR 764 (1146)
T ss_pred EEeCCCcCHHHHHHHHHHcCCCEEEEcHHHHHHHhccCCchhcccCceEEEeehhc--------cccchhHHHHHHHHhc
Confidence 9999999999999999999999999998766655421 1 1111111100 0001111122221111
Q ss_pred CCCC----CCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHHHHH
Q 019348 179 GSVT----DIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVIL 254 (342)
Q Consensus 179 ~~~~----~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~ 254 (342)
.... ........++++++++|||||||.||+|.+||+++...+.. ....+...++|++++.+|++|.+|+...+
T Consensus 765 ~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~--~~~~~~~~~~d~~l~~~p~~h~~g~~~~~ 842 (1146)
T PRK08633 765 LLPARLLKRLYGPTFKPDDTATIIFSSGSEGEPKGVMLSHHNILSNIEQ--ISDVFNLRNDDVILSSLPFFHSFGLTVTL 842 (1146)
T ss_pred cCCHHHHHhhccCCCCCCCEEEEEECCCCCCCCceEEechHHHHHHHHH--HHHhcCCCCCCEEEEcCcHHHHHhHHHHH
Confidence 0000 00013456789999999999999999999999999987554 34445567889999999999999996668
Q ss_pred HHHhhcCCeEEEcc-CCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCCHHHHHHHHHhC
Q 019348 255 YDQLQKGNCVVSMG-KFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNI 333 (342)
Q Consensus 255 ~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~ 333 (342)
+.++..|+++++.+ .+++..+++.++++++|++.++|++++.+.+.....+.+++++|.+++||+++++++.+++++.+
T Consensus 843 ~~~l~~g~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~ 922 (1146)
T PRK08633 843 WLPLLEGIKVVYHPDPTDALGIAKLVAKHRATILLGTPTFLRLYLRNKKLHPLMFASLRLVVAGAEKLKPEVADAFEEKF 922 (1146)
T ss_pred HHHHHCCCEEEEeCCCCCHHHHHHHHHHcCCeEEEecHHHHHHHHhccccCcccCCCeeeEEEcCCcCCHHHHHHHHHHh
Confidence 99999999999875 57999999999999999999999999999987666667889999999999999999999999999
Q ss_pred CCCcccccC
Q 019348 334 PGATIFQKI 342 (342)
Q Consensus 334 ~~~~l~~~Y 342 (342)
+ +++++.|
T Consensus 923 g-~~~~~~Y 930 (1146)
T PRK08633 923 G-IRILEGY 930 (1146)
T ss_pred C-CCeeccc
Confidence 7 8999888
No 82
>PRK12316 peptide synthase; Provisional
Probab=100.00 E-value=1.1e-37 Score=344.73 Aligned_cols=289 Identities=18% Similarity=0.245 Sum_probs=244.2
Q ss_pred CCHHHHHhhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeE
Q 019348 27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA 106 (342)
Q Consensus 27 ~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~ 106 (342)
.++.+.|.+.++++|+++|+++. ++.+||+||.++++++|+.|.+.|+++|++|+|+++|+.+++++++||+++|+++
T Consensus 2003 ~~~~~~~~~~a~~~p~~~A~~~~--~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~l~~~~s~~~~~~~lAil~aGa~~ 2080 (5163)
T PRK12316 2003 PGVHQRIAEQAARAPEAIAVVFG--DQHLSYAELDSRANRLAHRLRARGVGPEVRVAIAAERSFELVVALLAVLKAGGAY 2080 (5163)
T ss_pred CCHHHHHHHHHHhCCCCeEEEcC--CCeEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHhhceEE
Confidence 58999999999999999999987 7899999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhccC-CCeEEecCCCccccccccccccccccHHHHHhccCCCCCCC
Q 019348 107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN-LPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIP 185 (342)
Q Consensus 107 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (342)
+|++|.++.+++.++++++++++++++++....+.... ...+.++.. .... ... ....
T Consensus 2081 vpld~~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~-~~~--~~~~ 2139 (5163)
T PRK12316 2081 VPLDPNYPAERLAYMLEDSGAALLLTQRHLLERLPLPAGVARLPLDRD------------------AEWA-DYP--DTAP 2139 (5163)
T ss_pred eecCCCCCHHHHHHHHHhcCCCEEEeChhhhhhcccccccceEeccch------------------hhhh-ccC--ccCC
Confidence 99999999999999999999999999887655432211 112211110 0000 000 1112
Q ss_pred CCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHHHHHHHHhhcCCeEE
Q 019348 186 DVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVV 265 (342)
Q Consensus 186 ~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v 265 (342)
.....++++++|+|||||||.||||+++|+++.+.+.. ....+..+++|+++.+.|++|..++ ..++.+|..|++++
T Consensus 2140 ~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~--~~~~~~~~~~d~~l~~~~~~fd~~~-~~~~~~L~~G~~~~ 2216 (5163)
T PRK12316 2140 AVQLAGENLAYVIYTSGSTGLPKGVAVSHGALVAHCQA--AGERYELSPADCELQFMSFSFDGAH-EQWFHPLLNGARVL 2216 (5163)
T ss_pred CCCCCCCCeEEEEeCccCCCCCCEeEEccHHHHHHHHH--HHHhcCCCCcceEEEecCchHHHHH-HHHHHHHhCCCEEE
Confidence 23456789999999999999999999999999988554 4455667889999999999999887 88999999999998
Q ss_pred EccC--CCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCCHHHHHHHHHhCCCCcccccC
Q 019348 266 SMGK--FDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQKI 342 (342)
Q Consensus 266 ~~~~--~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~Y 342 (342)
+++. +++..+++.++++++|++.++|++++.|........ ..++||.+++||+++++++.++|.+.+++.+++++|
T Consensus 2217 ~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~-~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~Y 2294 (5163)
T PRK12316 2217 IRDDELWDPEQLYDEMERHGVTILDFPPVYLQQLAEHAERDG-RPPAVRVYCFGGEAVPAASLRLAWEALRPVYLFNGY 2294 (5163)
T ss_pred eCCcccCCHHHHHHHHHHcCCeEEEcChHHHHHHHhhhhccc-CCcceeEEEEecccCCHHHHHHHHHhCCCcEEEECc
Confidence 8753 689999999999999999999999999987653322 345899999999999999999999998888999998
No 83
>PRK10946 entE enterobactin synthase subunit E; Provisional
Probab=100.00 E-value=2.9e-37 Score=288.31 Aligned_cols=295 Identities=23% Similarity=0.271 Sum_probs=240.0
Q ss_pred CCHHHHHhhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeE
Q 019348 27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA 106 (342)
Q Consensus 27 ~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~ 106 (342)
.++.++|.+.++ ||++|+++. ++.+||+||.+++.++|..|.+.|+++|++|+++++|+.+++++++||+++|+++
T Consensus 25 ~~~~~~~~~~a~--p~~~a~~~~--~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~v~~~n~~~~~~~~la~~~~G~v~ 100 (536)
T PRK10946 25 LPLTDILTRHAA--SDAIAVICG--ERQFSYRELNQASDNLACSLRRQGIKPGDTALVQLGNVAEFYITFFALLKLGVAP 100 (536)
T ss_pred ccHHHHHHHhhC--CCCeEEEeC--CCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCChHHHHHHHHHHHHcCeEE
Confidence 589999988887 999999987 7899999999999999999999999999999999999999999999999999998
Q ss_pred eccCCCCCHHHHHHHhhhcCceEEEEcccch--------hhhhcc--CCCeEEecCCCccccccccccccccccHHHHHh
Q 019348 107 STANPVYTVSELSKQVKDSNPKLVITVPELW--------DKVKDL--NLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIE 176 (342)
Q Consensus 107 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~--------~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (342)
+++.+.....++.++++.+++++++++++.. ..+... ....+..... .....+.....
T Consensus 101 v~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~------------~~~~~~~~~~~ 168 (536)
T PRK10946 101 VNALFSHQRSELNAYASQIEPALLIADRQHALFSDDDFLNTLVAEHSSLRVVLLLND------------DGEHSLDDAIN 168 (536)
T ss_pred ecCCccccHHHHHHHHhhcCCCEEEEeccccccchHHHHHHHHhhCCCceEEEEecC------------CCCccHHHHhh
Confidence 8888888888999999999999999986531 111111 1112222111 11123333333
Q ss_pred ccCCCCCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHHH-HHH
Q 019348 177 LSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSV-ILY 255 (342)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~-~~~ 255 (342)
... .........++++++++|||||||.||+|++||+++...+.. ....+....+|++++.+|++|.+++.. .++
T Consensus 169 ~~~--~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~--~~~~~~~~~~~~~l~~~p~~h~~~~~~~~~~ 244 (536)
T PRK10946 169 HPA--EDFTATPSPADEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRR--SVEICGFTPQTRYLCALPAAHNYPMSSPGAL 244 (536)
T ss_pred Ccc--cccccCCCCCCCeEEEEeCCCCCCCCcEEEEehHHHHHHHHH--HHHhcCCCCCceEEEecCccccccchhhhHH
Confidence 222 112223446789999999999999999999999999988654 344555678899999999999988743 578
Q ss_pred HHhhcCCeEEEccCCCHHHHHHHHHhccceEEEecHHHHHHHHcCC--CCCccCCCCceEEEeecccCCHHHHHHHHHhC
Q 019348 256 DQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNS--LVRKFDISSLKLVGSGAAPLGKELMEDCQKNI 333 (342)
Q Consensus 256 ~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~--~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~ 333 (342)
.++..|+++++.+.+++..+++.++++++|++.++|.+++.++... ......++++|.+++||+++++.+.++|.+.+
T Consensus 245 ~~l~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~v~~gg~~l~~~~~~~~~~~~ 324 (536)
T PRK10946 245 GVFLAGGTVVLAPDPSATLCFPLIEKHQVNVTALVPPAVSLWLQAIAEGGSRAQLASLKLLQVGGARLSETLARRIPAEL 324 (536)
T ss_pred HHhhcCcEEEECCCCCHHHHHHHHHHhCCcEEEeChHHHHHHHhhhcccCccccccceeEEEECCCCCCHHHHHHHHHhc
Confidence 8999999999999899999999999999999999999999998762 23345678999999999999999999999999
Q ss_pred CCCcccccC
Q 019348 334 PGATIFQKI 342 (342)
Q Consensus 334 ~~~~l~~~Y 342 (342)
+ +++++.|
T Consensus 325 g-~~~~~~Y 332 (536)
T PRK10946 325 G-CQLQQVF 332 (536)
T ss_pred C-CeEEEee
Confidence 7 8999887
No 84
>PRK06178 acyl-CoA synthetase; Validated
Probab=100.00 E-value=1.2e-36 Score=286.16 Aligned_cols=327 Identities=21% Similarity=0.318 Sum_probs=248.0
Q ss_pred CceeecCCCCCCCCCCCCCCHHHHHhhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCC
Q 019348 9 DGIYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPN 88 (342)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n 88 (342)
+.+|...-+..+.-.....++.+.|.+.++.+||++|+.+. ++.+||.||.+++.++|..|.+.|+++|++|+++++|
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~p~~~al~~~--~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n 92 (567)
T PRK06178 15 QAAWPAGIPREPEYPHGERPLTEYLRAWARERPQRPAIIFY--GHVITYAELDELSDRFAALLRQRGVGAGDRVAVFLPN 92 (567)
T ss_pred HhhCCcCCCCCCCCCcCcccHHHHHHHHHHHCCCceEEEEC--CceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCC
Confidence 34444444443332222368999999999999999999987 7899999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHhCCeEeccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhccC----CCeEEecC-CCccccccc--
Q 019348 89 SIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN----LPAVLLGS-KDKVSSSGL-- 161 (342)
Q Consensus 89 ~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~----~~~~~~~~-~~~~~~~~~-- 161 (342)
+.+++++++||+++|++++|++|..+..++.++++.++++++++++...+.+.... ...+.+.. .........
T Consensus 93 ~~~~~~~~lA~~~~G~~~v~l~p~~~~~~~~~~l~~~~~~~ii~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 172 (567)
T PRK06178 93 CPQFHIVFFGILKLGAVHVPVSPLFREHELSYELNDAGAEVLLALDQLAPVVEQVRAETSLRHVIVTSLADVLPAEPTLP 172 (567)
T ss_pred CcHHHHHHHHHHHhCeEEeecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHHHhhccCCcceEEEeccccccccccccc
Confidence 99999999999999999999999999999999999999999999988766554332 12222111 100000000
Q ss_pred cc-----cccccccHHHHHhccCC-CCCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCC
Q 019348 162 IS-----RSSKIVSFHDLIELSGS-VTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELD 235 (342)
Q Consensus 162 ~~-----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~ 235 (342)
.. .......+.++...... ..........++++++|+|||||||.||+|++||.++.......... .....++
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~-~~~~~~~ 251 (567)
T PRK06178 173 LPDSLRAPRLAAAGAIDLLPALRACTAPVPLPPPALDALAALNYTGGTTGMPKGCEHTQRDMVYTAAAAYAV-AVVGGED 251 (567)
T ss_pred cccccccccccccccccHHHHhhccccccccCCCCCCCeEEEEeCCCCCCCCceEEeccHHHHHHHHHHHHH-hccCCCC
Confidence 00 00000111122211110 01112233567899999999999999999999999988764332111 2345688
Q ss_pred eEEEEccchhHHHHHHHHHHHHhhcCCeEEEccCCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEE
Q 019348 236 HVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVG 315 (342)
Q Consensus 236 d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~ 315 (342)
|++++.+|++|.+|+...++.++..|+++++.+++++..+++.++++++|.+.++|..+..+.......+.++++++.+.
T Consensus 252 d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~l~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~l~~~~~~~~~~l~~l~~~~ 331 (567)
T PRK06178 252 SVFLSFLPEFWIAGENFGLLFPLFSGATLVLLARWDAVAFMAAVERYRVTRTVMLVDNAVELMDHPRFAEYDLSSLRQVR 331 (567)
T ss_pred cEEEEecchHHHHHHHHHHHHHHHcCceEEEeCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhCCCCCCCCcchheeee
Confidence 99999999999999867789999999999999999999999999999999999999999999887655666778888765
Q ss_pred e--ecccCCHHHHHHHHHhCCCCccc
Q 019348 316 S--GAAPLGKELMEDCQKNIPGATIF 339 (342)
Q Consensus 316 ~--gG~~l~~~~~~~~~~~~~~~~l~ 339 (342)
. +|++++++..+.|++.+| ..++
T Consensus 332 ~~~~~~~~~~~~~~~~~~~~g-~~~~ 356 (567)
T PRK06178 332 VVSFVKKLNPDYRQRWRALTG-SVLA 356 (567)
T ss_pred eccccccCCHHHHHHHHHHhC-Cccc
Confidence 4 458999999999999987 4444
No 85
>PLN02479 acetate-CoA ligase
Probab=100.00 E-value=7.3e-37 Score=287.42 Aligned_cols=307 Identities=16% Similarity=0.239 Sum_probs=236.2
Q ss_pred CCHHHHHhhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeE
Q 019348 27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA 106 (342)
Q Consensus 27 ~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~ 106 (342)
.|+..++.+.+..+|+++|+++. ++++||+||.++++++|..|.+.|+++||+|+++++|+.+++++++||+++|+++
T Consensus 20 ~~~~~~~~~~~~~~p~~~a~~~~--~~~~ty~eL~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~v~ 97 (567)
T PLN02479 20 LTPLWFLERAAVVHPTRKSVVHG--SVRYTWAQTYQRCRRLASALAKRSIGPGSTVAVIAPNIPAMYEAHFGVPMAGAVV 97 (567)
T ss_pred cCHHHHHHHHHhhCCCceEEEEC--CceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHhCCcEE
Confidence 57899999999999999999986 6799999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhcc------------CCCeEEecCCCcccccc-ccccccccccHHH
Q 019348 107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDL------------NLPAVLLGSKDKVSSSG-LISRSSKIVSFHD 173 (342)
Q Consensus 107 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 173 (342)
+|+++..+.+++.++++.+++++++++++..+...+. ..+.++........... ......+...+.+
T Consensus 98 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (567)
T PLN02479 98 NCVNIRLNAPTIAFLLEHSKSEVVMVDQEFFTLAEEALKILAEKKKSSFKPPLLIVIGDPTCDPKSLQYALGKGAIEYEK 177 (567)
T ss_pred EEeccccCHHHHHHHHhhcCceEEEEchhhhhHHHHHHHHHhhcccccCCCceEEEecCCcCCccccccccccCcccHHH
Confidence 9999999999999999999999999987765432211 11112221111100000 0001123445666
Q ss_pred HHhccCCCCCCC-CCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHHH
Q 019348 174 LIELSGSVTDIP-DVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSV 252 (342)
Q Consensus 174 ~~~~~~~~~~~~-~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~ 252 (342)
++.... .... ......++.++++|||||||.||+|++||+++...+.. ....+....++++++..|++|.+++..
T Consensus 178 ~~~~~~--~~~~~~~~~~~~~~~~i~yTSGTTG~PKgV~~sh~~~~~~~~~--~~~~~~~~~~~~~~~~~p~~h~~~~~~ 253 (567)
T PLN02479 178 FLETGD--PEFAWKPPADEWQSIALGYTSGTTASPKGVVLHHRGAYLMALS--NALIWGMNEGAVYLWTLPMFHCNGWCF 253 (567)
T ss_pred HHhccc--cccccCCCCCcccceEEEECCCCCCCCcEEEeccHHHHHHHHH--HHhhcCCCCCCEEEEecchhhhhhHHH
Confidence 654432 1111 11223346778999999999999999999998765333 333445678899999999999999844
Q ss_pred HHHHHhhcCCeEEEccCCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCc-cCCCCceEEEeecccCCHHHHHHHHH
Q 019348 253 ILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRK-FDISSLKLVGSGAAPLGKELMEDCQK 331 (342)
Q Consensus 253 ~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~-~~l~~lr~~~~gG~~l~~~~~~~~~~ 331 (342)
.+...+..|.+++ ...+++..+++.++++++|++.++|.+++.|.+...... .++++++.++++|+++++.+.++|.+
T Consensus 254 ~~~~~~~~g~~~~-~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~l~~~~~~G~~~~~~~~~~~~~ 332 (567)
T PLN02479 254 TWTLAALCGTNIC-LRQVTAKAIYSAIANYGVTHFCAAPVVLNTIVNAPKSETILPLPRVVHVMTAGAAPPPSVLFAMSE 332 (567)
T ss_pred HHHHHhhcCceEe-ccCCCHHHHHHHHHHcCCeEEEecHHHHHHHHhhhhhcccccccceeEEEEcCCCCCHHHHHHHHh
Confidence 4445566666555 456899999999999999999999999999987654333 25789999999999999999999987
Q ss_pred hCCCCcccccC
Q 019348 332 NIPGATIFQKI 342 (342)
Q Consensus 332 ~~~~~~l~~~Y 342 (342)
. +.++++.|
T Consensus 333 ~--~~~~~~~y 341 (567)
T PLN02479 333 K--GFRVTHTY 341 (567)
T ss_pred c--CCceeccc
Confidence 6 47888877
No 86
>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase. Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.
Probab=100.00 E-value=1.4e-37 Score=319.20 Aligned_cols=304 Identities=17% Similarity=0.189 Sum_probs=237.9
Q ss_pred CCHHHHHhhhcccCCCceEEEeC-------CCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHH
Q 019348 27 FSMVHFLFRNSASYSSKLALIDA-------DSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGV 99 (342)
Q Consensus 27 ~~l~~~l~~~~~~~p~~~a~~~~-------~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~ 99 (342)
.++.++|.++++++||++|+++. +.++++||+||.++++++|++|.+.|+++|++|+|+++|+++++++++||
T Consensus 236 ~~l~~~~~~~a~~~pd~~A~~~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~gv~~g~~V~i~~~~~~~~i~~~lA~ 315 (1389)
T TIGR03443 236 GAIHDIFADNAEKHPDRTCVVETPSFLDPSSKTRSFTYKQINEASNILAHYLLKTGIKRGDVVMIYAYRGVDLVVAVMGV 315 (1389)
T ss_pred CcHHHHHHHHHHhCCCCeEEEeccccccccCCCceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEecCCHHHHHHHHHH
Confidence 47999999999999999999863 23579999999999999999999999999999999999999999999999
Q ss_pred HHhCCeEeccCCCCCHHHHHHHhhhcCceEEEEcccch---hhhhcc---------CCCeEEecCCCccccccccccccc
Q 019348 100 IAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELW---DKVKDL---------NLPAVLLGSKDKVSSSGLISRSSK 167 (342)
Q Consensus 100 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~---~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~ 167 (342)
+++|++++|++|..+.+++.++++.+++++++++.+.. ..+... ..+.+.+....... .....
T Consensus 316 l~~G~~~vpldp~~p~~~~~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~ 390 (1389)
T TIGR03443 316 LKAGATFSVIDPAYPPARQTIYLSVAKPRALIVIEKAGTLDQLVRDYIDKELELRTEIPALALQDDGSLV-----GGSLE 390 (1389)
T ss_pred HhhCcEEeccCCCCcHHHHHHHHHhcCCCEEEEeccccccchhhhhhhhcccccccccceEEeccccccc-----ccccc
Confidence 99999999999999999999999999999999875421 111110 01111111100000 00000
Q ss_pred cccHHHHHhccCC-CCCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhH
Q 019348 168 IVSFHDLIELSGS-VTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFH 246 (342)
Q Consensus 168 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~ 246 (342)
....+....... ..........++++++|+|||||||.||||+++|+++.+.+.. ....+.+..+|+++...|++|
T Consensus 391 -~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~--~~~~~~~~~~d~~~~~~~~~~ 467 (1389)
T TIGR03443 391 -GGETDVLAPYQALKDTPTGVVVGPDSNPTLSFTSGSEGIPKGVLGRHFSLAYYFPW--MAKRFGLSENDKFTMLSGIAH 467 (1389)
T ss_pred -cccccccccccccccCCCCCcCCCCCceEEEECCCCCCCCCEEEeccHHHHHHHHH--HHHhcCCCCCCEEEEecCcee
Confidence 000000000000 0011112345789999999999999999999999999987544 444556678899999999999
Q ss_pred HHHHHHHHHHHhhcCCeEEEccC---CCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCCH
Q 019348 247 VFGLSVILYDQLQKGNCVVSMGK---FDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGK 323 (342)
Q Consensus 247 ~~g~~~~~~~~l~~G~~~v~~~~---~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~ 323 (342)
..++ ..++.+|..|+++++++. .++..+++.++++++|+++++|++++.|.... ...+++||.+++||+++++
T Consensus 468 d~~~-~~i~~~L~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~---~~~~~~lr~~~~gGe~l~~ 543 (1389)
T TIGR03443 468 DPIQ-RDMFTPLFLGAQLLVPTADDIGTPGRLAEWMAKYGATVTHLTPAMGQLLSAQA---TTPIPSLHHAFFVGDILTK 543 (1389)
T ss_pred cchH-HHHHHHHhCCCEEEEcChhhccCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcc---cccCCCccEEEEecccCCH
Confidence 9887 789999999999999864 36889999999999999999999999987543 3458899999999999999
Q ss_pred HHHHHHHHhCCCCcccccC
Q 019348 324 ELMEDCQKNIPGATIFQKI 342 (342)
Q Consensus 324 ~~~~~~~~~~~~~~l~~~Y 342 (342)
...+++++.++++++++.|
T Consensus 544 ~~~~~~~~~~~~~~l~n~Y 562 (1389)
T TIGR03443 544 RDCLRLQTLAENVCIVNMY 562 (1389)
T ss_pred HHHHHHHHhCCCCEEEECc
Confidence 9999999988889999988
No 87
>TIGR02262 benz_CoA_lig benzoate-CoA ligase family. Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases.
Probab=100.00 E-value=1.1e-36 Score=282.85 Aligned_cols=298 Identities=26% Similarity=0.384 Sum_probs=241.0
Q ss_pred HHHHHhhh-cccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeEe
Q 019348 29 MVHFLFRN-SASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIAS 107 (342)
Q Consensus 29 l~~~l~~~-~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v 107 (342)
-.+.+.++ ++.+||++|+++. ++.+||.||.++++++|+.|.+.|+++|++|+++++|+.+++++++||+++|++++
T Consensus 6 ~~~~~~~~~~~~~p~~~a~~~~--~~~~ty~~l~~~~~~~a~~L~~~g~~~g~~v~l~~~~~~~~~~~~~a~~~~G~~~v 83 (508)
T TIGR02262 6 AEDLLDRNVVEGRGGKTAFIDD--ISSLSYGELEAQVRRLGAALRRLGVKREERVLLLMLDGVDFPIAFLGAIRAGIVPV 83 (508)
T ss_pred HHHHHHHHHhcccCCceEEEeC--CceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEe
Confidence 34556665 5779999999986 78999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhccC-----CCeEEecCCCccccccccccccccccHHHHHhccCCCC
Q 019348 108 TANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN-----LPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVT 182 (342)
Q Consensus 108 ~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (342)
|+++..+.+++.++++.+++++++++++..+.+.+.. ...+..... .......+.++..... .
T Consensus 84 ~l~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~--~ 151 (508)
T TIGR02262 84 ALNTLLTADDYAYMLEDSRARVVFVSGELLPVIKAALGKSPHLEHRVVVGR----------PEAGEVQLAELLATES--E 151 (508)
T ss_pred eccCCCCHHHHHHHHHhcCCeEEEEchhhHHHHHHHHhcCCCccEEEEeCC----------CCcccccHHHHhhcCC--C
Confidence 9999999999999999999999999987665543321 111111111 0111223444433222 1
Q ss_pred CCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHHHHHHHHhhcCC
Q 019348 183 DIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGN 262 (342)
Q Consensus 183 ~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~ 262 (342)
........++++++++|||||||.||+|.++|+++...+... ....+....+|+++...|++|.+++...++.++..|+
T Consensus 152 ~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~-~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~l~~G~ 230 (508)
T TIGR02262 152 QFKPAATQADDPAFWLYSSGSTGMPKGVVHTHSNPYWTAELY-ARNTLGIREDDVVFSAAKLFFAYGLGNALTFPMSVGA 230 (508)
T ss_pred ccCCCCCCCCCcEEEEeCCCCCCCCcEEEEechhHHHHHHHH-hHHhcCCCCCCEEEEcCchHHHHHHHHHHHHHHHcCc
Confidence 222234457899999999999999999999999998765432 1233456788999999999999998677888999999
Q ss_pred eEEEcc-CCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCCHHHHHHHHHhCCCCccccc
Q 019348 263 CVVSMG-KFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQK 341 (342)
Q Consensus 263 ~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~ 341 (342)
++++.+ .+++..+++.++++++|.+.++|.++..++...........++|.+++||+++++++.+.|++.|+ +++++.
T Consensus 231 ~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~~~~~~~~~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~-~~v~~~ 309 (508)
T TIGR02262 231 TTVLMGERPTPDAVFDRLRRHQPTIFYGVPTLYAAMLADPNLPAEDQVRLRLCTSAGEALPAEVGQRWQARFG-VDIVDG 309 (508)
T ss_pred eEEEeCCCCCHHHHHHHHHHHCCcEEecchHHHHHHhcCccccccccccceeEEEcCCCCCHHHHHHHHHHhC-CchhhC
Confidence 998875 468999999999999999999999999888766544456779999999999999999999999997 889988
Q ss_pred C
Q 019348 342 I 342 (342)
Q Consensus 342 Y 342 (342)
|
T Consensus 310 Y 310 (508)
T TIGR02262 310 I 310 (508)
T ss_pred c
Confidence 7
No 88
>PRK12492 long-chain-fatty-acid--CoA ligase; Provisional
Probab=100.00 E-value=1.3e-36 Score=285.52 Aligned_cols=312 Identities=23% Similarity=0.373 Sum_probs=241.0
Q ss_pred CCHHHHHhhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEECCCCChHHHHHHHHHHhCCe
Q 019348 27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHL-GITKKDVVLIFAPNSIHFPICFLGVIAIGAI 105 (342)
Q Consensus 27 ~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~-g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~ 105 (342)
.++.+.|.+.++++|+++|+++. ++.+||.||.++++++|+.|.+. |+++||+|+++++|+++++++++||+++|++
T Consensus 24 ~~~~~~l~~~~~~~p~~~a~~~~--~~~~Ty~~l~~~~~~~a~~L~~~~gi~~gd~V~i~~~n~~e~~~~~la~~~~G~v 101 (562)
T PRK12492 24 KSVVEVFERSCKKFADRPAFSNL--GVTLSYAELERHSAAFAAYLQQHTDLVPGDRIAVQMPNVLQYPIAVFGALRAGLI 101 (562)
T ss_pred CcHHHHHHHHHHhCCCCeeEecC--CceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeE
Confidence 68999999999999999999976 78999999999999999999885 9999999999999999999999999999999
Q ss_pred EeccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhcc----CCCeEEecCCCc-cc--------------ccc-ccccc
Q 019348 106 ASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDL----NLPAVLLGSKDK-VS--------------SSG-LISRS 165 (342)
Q Consensus 106 ~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~----~~~~~~~~~~~~-~~--------------~~~-~~~~~ 165 (342)
++++++..+.+++.++++.++++++++++......... ....+....... .. ... .....
T Consensus 102 ~v~~~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (562)
T PRK12492 102 VVNTNPLYTAREMRHQFKDSGARALVYLNMFGKLVQEVLPDTGIEYLIEAKMGDLLPAAKGWLVNTVVDKVKKMVPAYHL 181 (562)
T ss_pred EeccCccCCHHHHHHHHhccCceEEEeccccchHHHHhhhccCceEEEeechhhccccccchhcccccccccccccccCC
Confidence 99999999999999999999999999987554333211 011111000000 00 000 00001
Q ss_pred cccccHHHHHhccCCCCCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhc-cc------cC-CCeE
Q 019348 166 SKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQE-LV------GE-LDHV 237 (342)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~-~~------~~-~~d~ 237 (342)
.....|++....... ..........+++++|+|||||||.||+|+++|+++...+........ .. .. .+++
T Consensus 182 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (562)
T PRK12492 182 PQAVPFKQALRQGRG-LSLKPVPVGLDDIAVLQYTGGTTGLAKGAMLTHGNLVANMLQVRACLSQLGPDGQPLMKEGQEV 260 (562)
T ss_pred cccccHHHHHhccCC-CCCCCCCCCcCCeEEEEeCCCCCCCCceEEEechhHHHHHHHHHHHHhcccccccccccCCCeE
Confidence 122345555433221 111123445689999999999999999999999999776443221111 10 12 2467
Q ss_pred EEEccchhHHHHHHHHHHHHhhcCCeEEEc-cCCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEe
Q 019348 238 VLCVLPMFHVFGLSVILYDQLQKGNCVVSM-GKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGS 316 (342)
Q Consensus 238 ~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~-~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~ 316 (342)
+++.+|++|.+++...++..+..|+++++. +.+++..+++.++++++|++..+|.++..+.+.......+++++|.+++
T Consensus 261 ~~~~~pl~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~ 340 (562)
T PRK12492 261 MIAPLPLYHIYAFTANCMCMMVSGNHNVLITNPRDIPGFIKELGKWRFSALLGLNTLFVALMDHPGFKDLDFSALKLTNS 340 (562)
T ss_pred EEEecchHHHHHHHHHHHHHhhcCceEEEecCCcCHHHHHHHHHHhCCceeeCcHHHHHHHHhCcCcccccccceeEEEe
Confidence 889999999999866677888899887765 4568999999999999999999999999999887666677899999999
Q ss_pred ecccCCHHHHHHHHHhCCCCcccccC
Q 019348 317 GAAPLGKELMEDCQKNIPGATIFQKI 342 (342)
Q Consensus 317 gG~~l~~~~~~~~~~~~~~~~l~~~Y 342 (342)
||+++++.+.++|++.++ +++++.|
T Consensus 341 gG~~~~~~~~~~~~~~~~-~~~~~~Y 365 (562)
T PRK12492 341 GGTALVKATAERWEQLTG-CTIVEGY 365 (562)
T ss_pred ccccCCHHHHHHHHHHhC-Cceeecc
Confidence 999999999999999887 8999887
No 89
>PRK09088 acyl-CoA synthetase; Validated
Probab=100.00 E-value=5e-37 Score=283.87 Aligned_cols=279 Identities=19% Similarity=0.302 Sum_probs=228.7
Q ss_pred hhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeEeccCCCCC
Q 019348 35 RNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYT 114 (342)
Q Consensus 35 ~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~ 114 (342)
.+++.+||++|+.+...++.+||.||.+.+.++|..|.+.|+.+||+|+++++|+++++++++||+++|++++|+++..+
T Consensus 3 ~~a~~~p~~~a~~~~~~~~~~ty~~l~~~v~~~a~~l~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~v~~~~~~~ 82 (488)
T PRK09088 3 FHARLQPQRLAAVDLALGRRWTYAELDALVGRLAAVLRRRGCVDGERLAVLARNSVWLVALHFACARVGAIYVPLNWRLS 82 (488)
T ss_pred hhhhhCCCceEEEecCCCcEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEEEeeCccCC
Confidence 45678999999987544789999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcCceEEEEcccchhhhhccCCCeEEecCCCccccccccccccccccHHHHHhccCCCCCCCCCCCCCCCe
Q 019348 115 VSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDA 194 (342)
Q Consensus 115 ~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (342)
.+++.++++.++++++++++....... .. ..++++.................+++
T Consensus 83 ~~~~~~~~~~~~~~~ii~~~~~~~~~~----~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (488)
T PRK09088 83 ASELDALLQDAEPRLLLGDDAVAAGRT----DV---------------------EDLAAFIASADALEPADTPSIPPERV 137 (488)
T ss_pred HHHHHHHHHhCCCCEEEEcchhhcccc----cc---------------------cchhhhhhhccccccccCCCCCCCCc
Confidence 999999999999999999865432100 00 01111111100001111123356789
Q ss_pred EEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHHHHHHHHhhcCCeEEEccCCCHHH
Q 019348 195 AALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEM 274 (342)
Q Consensus 195 ~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~ 274 (342)
++++|||||||.||+|.++|+++...+... ........+|++++..|++|.+++...++.++..|+++++.+.+++..
T Consensus 138 ~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~--~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~ 215 (488)
T PRK09088 138 SLILFTSGTSGQPKGVMLSERNLQQTAHNF--GVLGRVDAHSSFLCDAPMFHIIGLITSVRPVLAVGGSILVSNGFEPKR 215 (488)
T ss_pred eEEEeCCCCCCCCcEEEEehHHHHHHHHHH--HHhhCCCCCcEEEEecchHHHHHHHHHHHHHHhcCCEEEEcCCCCHHH
Confidence 999999999999999999999998775442 333345678999999999999999777889999999999998899999
Q ss_pred HHHHHH--hccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCCHHHHHHHHHhCCCCcccccC
Q 019348 275 ALRAIE--KYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQKI 342 (342)
Q Consensus 275 ~~~~i~--~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~Y 342 (342)
++..+. ++++|.++++|++++.+..........++++|.+++||++++....+++++. ++++++.|
T Consensus 216 ~~~~~~~~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~gG~~~~~~~~~~~~~~--g~~v~~~Y 283 (488)
T PRK09088 216 TLGRLGDPALGITHYFCVPQMAQAFRAQPGFDAAALRHLTALFTGGAPHAAEDILGWLDD--GIPMVDGF 283 (488)
T ss_pred HHHHHHhhccCCcEEeeHHHHHHHHHhCcCcCccccccceEEEecCCCCCHHHHHHHHHh--CCceeeee
Confidence 999886 4899999999999999988765555678899999999999999999988876 48888877
No 90
>PRK05691 peptide synthase; Validated
Probab=100.00 E-value=1.6e-37 Score=341.13 Aligned_cols=287 Identities=16% Similarity=0.223 Sum_probs=243.8
Q ss_pred CCHHHHHhhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeE
Q 019348 27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA 106 (342)
Q Consensus 27 ~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~ 106 (342)
.++.++|.++++++||++|+++. +..+||+||.++++++|+.|.+.|+++|++|+|+++++.+++++++|++++|+++
T Consensus 3720 ~~~~~~~~~~~~~~p~~~Av~~~--~~~~tY~eL~~~~~~la~~L~~~gv~~~~~V~v~~~~s~~~~v~~lavlkaG~a~ 3797 (4334)
T PRK05691 3720 QSYVRLFEAQVAAHPQRIAASCL--DQQWSYAELNRAANRLGHALRAAGVGVDQPVALLAERGLDLLGMIVGSFKAGAGY 3797 (4334)
T ss_pred cCHHHHHHHHHHhCCCceEEEcC--CCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHhhCcEE
Confidence 58999999999999999999998 7899999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhccC-------CCeEEecCCCccccccccccccccccHHHHHhccC
Q 019348 107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN-------LPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSG 179 (342)
Q Consensus 107 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (342)
+||+|.++.+++.++++++++++++++........... .+.+.+. .+......
T Consensus 3798 vpld~~~p~~r~~~il~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~ 3857 (4334)
T PRK05691 3798 LPLDPGLPAQRLQRIIELSRTPVLVCSAACREQARALLDELGCANRPRLLVW--------------------EEVQAGEV 3857 (4334)
T ss_pred eCCCCCChHHHHHHHHHhcCCCEEEecCcccchhhhhhcccccccccceeee--------------------cccccccc
Confidence 99999999999999999999999999877554322211 0111110 00000000
Q ss_pred CCCCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHHHHHHHHhh
Q 019348 180 SVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQ 259 (342)
Q Consensus 180 ~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~ 259 (342)
. .........+++.+||+|||||||.||||+++|+++.+.+.. ....+.++++|+++...+++|..+. ..++.+|.
T Consensus 3858 ~-~~~~~~~~~~~~~ayvi~TSGSTG~PKGV~~~h~~~~~~~~~--~~~~~~~~~~~~~~~~~s~~fd~s~-~~~~~~l~ 3933 (4334)
T PRK05691 3858 A-SHNPGIYSGPDNLAYVIYTSGSTGLPKGVMVEQRGMLNNQLS--KVPYLALSEADVIAQTASQSFDISV-WQFLAAPL 3933 (4334)
T ss_pred c-ccCCCCCCCCCceEEEEECCCCCCCCCEEEeehHHHHHHHHH--HHHhcCCCccceEEEecCCchhHHH-HHHHHHHh
Confidence 0 111223456789999999999999999999999999998544 5556677899999999999999998 88999999
Q ss_pred cCCeEEEccC---CCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCCHHHHHHHHHhCCCC
Q 019348 260 KGNCVVSMGK---FDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGA 336 (342)
Q Consensus 260 ~G~~~v~~~~---~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~ 336 (342)
.|+++++++. .++..+++.++++++|++.++|++++.++... ...+++||.+++|||++++++.++|++.++++
T Consensus 3934 ~G~~l~i~~~~~~~~~~~l~~~~~~~~vt~~~~~Ps~~~~l~~~~---~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~ 4010 (4334)
T PRK05691 3934 FGARVEIVPNAIAHDPQGLLAHVQAQGITVLESVPSLIQGMLAED---RQALDGLRWMLPTGEAMPPELARQWLQRYPQI 4010 (4334)
T ss_pred CCCEEEEcCccccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhhc---cccCCCceEEEecCCcCCHHHHHHHHHhCCCC
Confidence 9999999864 57899999999999999999999999887643 34578999999999999999999999999889
Q ss_pred cccccC
Q 019348 337 TIFQKI 342 (342)
Q Consensus 337 ~l~~~Y 342 (342)
+++|.|
T Consensus 4011 ~l~n~Y 4016 (4334)
T PRK05691 4011 GLVNAY 4016 (4334)
T ss_pred eEEeCc
Confidence 999998
No 91
>PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional
Probab=100.00 E-value=8.5e-37 Score=283.48 Aligned_cols=289 Identities=18% Similarity=0.257 Sum_probs=240.4
Q ss_pred CCHHHHHhhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeE
Q 019348 27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA 106 (342)
Q Consensus 27 ~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~ 106 (342)
+++.+.+.+.++.+|+++++.+. ++++||.||.+.+.++|..|.+.|+++|++|+++++|+.+++++++||+++|+++
T Consensus 2 ~~~~~~l~~~a~~~p~~~~~~~~--~~~~t~~~l~~~~~~~a~~l~~~g~~~~~~v~~~~~~~~~~~~~~~a~~~~G~~~ 79 (503)
T PRK04813 2 MDIIETIEEFAQTQPDFPAYDYL--GEKLTYGQLKEDSDALAAFIDSLKLPDKSPIIVFGHMSPEMLATFLGAVKAGHAY 79 (503)
T ss_pred chHHHHHHHHHHhCCCceEEEeC--CcEEeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEE
Confidence 57889999999999999999987 7899999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhccCCCeEEecCCCccccccccccccccccHHHHHhccCCCCCCCC
Q 019348 107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPD 186 (342)
Q Consensus 107 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (342)
+|+++..+.+++.++++..++++++++.+.... ......+.. ..+.+...... .....
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~------------------~~~~~~~~~~~--~~~~~ 137 (503)
T PRK04813 80 IPVDVSSPAERIEMIIEVAKPSLIIATEELPLE--ILGIPVITL------------------DELKDIFATGN--PYDFD 137 (503)
T ss_pred ecCCCCChHHHHHHHHHhcCCCEEEeccccccc--ccCCcEEeh------------------HHhhhhhhccc--ccccc
Confidence 999999999999999999999999998765111 000111100 01111111011 11112
Q ss_pred CCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHHHHHHHHhhcCCeEEE
Q 019348 187 VSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVS 266 (342)
Q Consensus 187 ~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~ 266 (342)
....+++.++++|||||||.||+|.++|+++...+.. ....+....++++++..|++|..++ ..++.++..|+++++
T Consensus 138 ~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~--~~~~~~~~~~~~~~~~~p~~~~~~~-~~~~~~l~~g~~~v~ 214 (503)
T PRK04813 138 HAVKGDDNYYIIFTSGTTGKPKGVQISHDNLVSFTNW--MLEDFALPEGPQFLNQAPYSFDLSV-MDLYPTLASGGTLVA 214 (503)
T ss_pred ccCCCCCcEEEEECCCCCCCCcEEEeehHHHHHHHHH--HHHHcCCCcCceeeecCCcchhHhH-HHHHHHHhcCCEEEE
Confidence 2346688999999999999999999999999987544 3344556788999999999999988 778899999999999
Q ss_pred ccC---CCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCCHHHHHHHHHhCCCCcccccC
Q 019348 267 MGK---FDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQKI 342 (342)
Q Consensus 267 ~~~---~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~Y 342 (342)
.++ .++..+++.++++++|++..+|.+++.+.........+++++|.++++|+++++.+.+++++.|+++.+++.|
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~t~~~~~p~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~~~~~~y 293 (503)
T PRK04813 215 LPKDMTANFKQLFETLPQLPINVWVSTPSFADMCLLDPSFNEEHLPNLTHFLFCGEELPHKTAKKLLERFPSATIYNTY 293 (503)
T ss_pred cChhhhcCHHHHHHHHHHcCCeEEEeChHHHHHHHHhhccCcccCCCceEEEEecCcCCHHHHHHHHHHCCCceEEeCc
Confidence 875 5889999999999999999999999887766555566789999999999999999999999999878899887
No 92
>PRK07769 long-chain-fatty-acid--CoA ligase; Validated
Probab=100.00 E-value=2.1e-37 Score=294.52 Aligned_cols=289 Identities=22% Similarity=0.315 Sum_probs=227.2
Q ss_pred CCHHHHHhhhcccCCCceEEEeCC-------CCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHH
Q 019348 27 FSMVHFLFRNSASYSSKLALIDAD-------SDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGV 99 (342)
Q Consensus 27 ~~l~~~l~~~~~~~p~~~a~~~~~-------~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~ 99 (342)
.|+.++|.+.++.+|+++|+++.+ ..+.+||+||.++++++|+.|.+. +++||+|+++++|+++++++++||
T Consensus 21 ~~l~~~l~~~a~~~~~~~a~~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~-~~~gd~V~i~~~n~~e~~~~~lA~ 99 (631)
T PRK07769 21 TNLVRHVERWAKVRGDKLAYRFLDFSTERDGVARDLTWSQFGARNRAVGARLQQV-TKPGDRVAILAPQNLDYLIAFFGA 99 (631)
T ss_pred CCHHHHHHHHHHhCCCCeEEEEeccCCCCCCceeEeeHHHHHHHHHHHHHHHHHh-cCCCCEEEEEcCCChHHHHHHHHH
Confidence 799999999999999999998642 126899999999999999999886 899999999999999999999999
Q ss_pred HHhCCeEecc-CCCCC--HHHHHHHhhhcCceEEEEcccchhhhhcc----C----CCeEEecCCCcccccccccccccc
Q 019348 100 IAIGAIASTA-NPVYT--VSELSKQVKDSNPKLVITVPELWDKVKDL----N----LPAVLLGSKDKVSSSGLISRSSKI 168 (342)
Q Consensus 100 ~~~G~~~v~l-~~~~~--~~~l~~~l~~~~~~~vi~~~~~~~~~~~~----~----~~~~~~~~~~~~~~~~~~~~~~~~ 168 (342)
+++|++++|+ ++..+ .+++.++++.++++++|++++....+... . ...+.++..
T Consensus 100 ~~~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------- 164 (631)
T PRK07769 100 LYAGRIAVPLFDPAEPGHVGRLHAVLDDCTPSAILTTTDSAEGVRKFFRARPAKERPRVIAVDAV--------------- 164 (631)
T ss_pred HHcCCEEEeeCCCCccchHHHHHHHHHhCCCCEEEEChHHHHHHHHHHhhccccccceEEEcccc---------------
Confidence 9999999999 45554 67899999999999999987765443221 0 011111100
Q ss_pred ccHHHHHhccCCCCCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHH
Q 019348 169 VSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVF 248 (342)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~ 248 (342)
.+.. . .........++++++|+|||||||.||||++||+++...+.. ....+....+|++++.+|++|.+
T Consensus 165 ---~~~~---~--~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~--~~~~~~~~~~d~~l~~~Pl~h~~ 234 (631)
T PRK07769 165 ---PDEV---G--ATWVPPEANEDTIAYLQYTSGSTRIPAGVQITHLNLPTNVLQ--VIDALEGQEGDRGVSWLPFFHDM 234 (631)
T ss_pred ---cccc---c--cccCCCCCCCCCeEEEEeCCCCCCCCcEEEEcHHHHHHHHHH--HHHHcCCCCcceEEEeCCCcCch
Confidence 0000 0 011112345689999999999999999999999999887544 33455567889999999999999
Q ss_pred HHHHHHHHHhhcCCeEEEccC--C--CHHHHHHHHHhccc---eEEEecHHHHHHHHcC---CC--CCccCCCCceEEEe
Q 019348 249 GLSVILYDQLQKGNCVVSMGK--F--DIEMALRAIEKYRV---TVWWVVPPIILALAKN---SL--VRKFDISSLKLVGS 316 (342)
Q Consensus 249 g~~~~~~~~l~~G~~~v~~~~--~--~~~~~~~~i~~~~~---t~~~~~P~~l~~l~~~---~~--~~~~~l~~lr~~~~ 316 (342)
|+ ..++.++..|+++++.++ + ++..+++.++++++ +.+..+|.++..+... .. ....++++||.+++
T Consensus 235 gl-~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~lr~~~~ 313 (631)
T PRK07769 235 GL-ITVLLPALLGHYITFMSPAAFVRRPGRWIRELARKPGGTGGTFSAAPNFAFEHAAARGLPKDGEPPLDLSNVKGLLN 313 (631)
T ss_pred hh-HHHHHHHhhCCeEEEEChHHHHhCHHHHHHHHHhhccccCceEeeCCchHHHHHHhhccchhcccCcchhheeeEEe
Confidence 99 566777888999988753 4 89999999999986 7899999887766543 11 11457899999999
Q ss_pred ecccCCHHHHHHHHHhCC-----CCcccccC
Q 019348 317 GAAPLGKELMEDCQKNIP-----GATIFQKI 342 (342)
Q Consensus 317 gG~~l~~~~~~~~~~~~~-----~~~l~~~Y 342 (342)
||+++++++.++|++.|+ ...++++|
T Consensus 314 gg~~l~~~~~~~~~~~~~~~g~~~~~i~~~Y 344 (631)
T PRK07769 314 GSEPVSPASMRKFNEAFAPYGLPPTAIKPSY 344 (631)
T ss_pred ccCCCCHHHHHHHHHHHhhcCCChhhccccc
Confidence 999999999999999884 23577877
No 93
>TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway.
Probab=100.00 E-value=1.8e-36 Score=288.24 Aligned_cols=307 Identities=19% Similarity=0.230 Sum_probs=227.8
Q ss_pred CCHHHHHhhhcccCCCceEEEeCCC---CcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhC
Q 019348 27 FSMVHFLFRNSASYSSKLALIDADS---DESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIG 103 (342)
Q Consensus 27 ~~l~~~l~~~~~~~p~~~a~~~~~~---~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G 103 (342)
.|+.+.+.++ +++++|+++.+. .+++||+||.+++.++|+.|++.|+++||+|+++++|+++++++++||+++|
T Consensus 87 ~n~~~~~~~~---~~~~~a~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrV~i~~~n~~e~~~~~lA~~~~G 163 (652)
T TIGR01217 87 LNYAENLLRA---AGTEPALLYVDETHEPAPVTWAELRRQVASLAAALRALGVRPGDRVSGYLPNIPQAVVAMLATASVG 163 (652)
T ss_pred eeHHHHHhcc---CCCCeEEEEECCCCCeeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhC
Confidence 5777776653 468889886532 2689999999999999999999999999999999999999999999999999
Q ss_pred CeEeccCCCCCHHHHHHHhhhcCceEEEEcccch---------hhhh----ccC-CC-eEEecCCCcccccccccccccc
Q 019348 104 AIASTANPVYTVSELSKQVKDSNPKLVITVPELW---------DKVK----DLN-LP-AVLLGSKDKVSSSGLISRSSKI 168 (342)
Q Consensus 104 ~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~----~~~-~~-~~~~~~~~~~~~~~~~~~~~~~ 168 (342)
++++|+++.++.+++.+++++++|+++|+++... ..+. .+. .. .+.+........ ........
T Consensus 164 av~vp~~~~~~~~~l~~~l~~~~~k~li~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~ 241 (652)
T TIGR01217 164 AIWSSCSPDFGARGVLDRFQQIEPKLLFTVDGYRYNGKEHDRRDKVAEVRKELPTLRAVVHIPYLGPRET--EAPKIDGA 241 (652)
T ss_pred eEEEecCCCCCHHHHHHHHHhcCCcEEEEccccccCCcccchHHHHHHHHhcCCCccEEEEEeCCCCccc--ccccccCc
Confidence 9999999999999999999999999999986532 1111 111 11 222221110000 00001123
Q ss_pred ccHHHHHhccCCCCCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHH
Q 019348 169 VSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVF 248 (342)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~ 248 (342)
..|+++...... ..........+++++|+|||||||.||||+++|++++..... .....+.+.++|++++..|+.|+.
T Consensus 242 ~~~~~~~~~~~~-~~~~~~~~~~~d~~~ilyTSGTTG~PKgV~~sh~~~~~~~~~-~~~~~~~~~~~d~~~~~~~~~~~~ 319 (652)
T TIGR01217 242 LDLEDFTAAAQA-AELVFEQLPFDHPLWILFSSGTTGLPKCIVHSAGGTLVQHLK-EHGLHCDLGPGDRLFYYTTTGWMM 319 (652)
T ss_pred ccHHHHHhcccC-CCCCceecCCCCCEEEEEcCCCCCCCCeEEecccHHHHHHHH-HHHhccCCCCCcEEEEeCCcchhh
Confidence 456666543211 111223345689999999999999999999999986543111 123345567889999999999975
Q ss_pred HHHHHHHHHhhcCCeEEEccC----CCHHHHHHHHHhccceEEEecHHHHHHHHcCCC--CCccCCCCceEEEeecccCC
Q 019348 249 GLSVILYDQLQKGNCVVSMGK----FDIEMALRAIEKYRVTVWWVVPPIILALAKNSL--VRKFDISSLKLVGSGAAPLG 322 (342)
Q Consensus 249 g~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~--~~~~~l~~lr~~~~gG~~l~ 322 (342)
+ ..++.+|..|+++++.+. .++..++++++++++|++..+|.+++.+..... ....++++||.+++||++++
T Consensus 320 ~--~~~~~~l~~G~t~vl~~g~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l~ 397 (652)
T TIGR01217 320 W--NWLVSGLATGATLVLYDGSPGFPATNVLWDIAERTGATLFGTSAKYVMACRKAGVHPARTHDLSALQCVASTGSPLP 397 (652)
T ss_pred h--HHHHHHHhcCcEEEEECCCCCCCCchHHHHHHHHhCCeEEecCHHHHHHHHhcCCCccccCChhheeEEEeecCCCC
Confidence 4 346689999999999852 278999999999999999888888877765421 23467899999999999999
Q ss_pred HHHHHHHHHhCC-CCcccccC
Q 019348 323 KELMEDCQKNIP-GATIFQKI 342 (342)
Q Consensus 323 ~~~~~~~~~~~~-~~~l~~~Y 342 (342)
+++.+++.+.++ +..+.+.|
T Consensus 398 ~~~~~~~~~~~~~~~~~~~~y 418 (652)
T TIGR01217 398 PDGFRWVYDEIKADVWLASIS 418 (652)
T ss_pred HHHHHHHHHHhCCCceEEecc
Confidence 999999999886 23344443
No 94
>PRK06164 acyl-CoA synthetase; Validated
Probab=100.00 E-value=1.4e-36 Score=284.34 Aligned_cols=302 Identities=20% Similarity=0.281 Sum_probs=235.8
Q ss_pred CCHHHHHhhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeE
Q 019348 27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA 106 (342)
Q Consensus 27 ~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~ 106 (342)
.++.++|.+.++++|+++|+++. ++.+||+||.+++.++|+.|.+.|+++||+|+++++|+.+++++++||+++|+++
T Consensus 10 ~~l~~~l~~~a~~~p~~~a~~~~--~~~~Ty~~L~~~~~~~a~~L~~~g~~~g~~V~i~~~n~~~~~~~~la~~~~G~~~ 87 (540)
T PRK06164 10 DTLASLLDAHARARPDAVALIDE--DRPLSRAELRALVDRLAAWLAAQGVRRGDRVAVWLPNCIEWVVLFLACARLGATV 87 (540)
T ss_pred CCHHHHHHHHHHhCCCCeEEecC--CCcccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcHHHHHHHHHHHHhCcEE
Confidence 68999999999999999999965 7899999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCHHHHHHHhhhcCceEEEEcccchh-----hhhccC------CC-eEEecCCCccccccccccccccccHHHH
Q 019348 107 STANPVYTVSELSKQVKDSNPKLVITVPELWD-----KVKDLN------LP-AVLLGSKDKVSSSGLISRSSKIVSFHDL 174 (342)
Q Consensus 107 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~-----~~~~~~------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (342)
+|+++..+.+++.++++.+++++++++++... .+.... .. .+.++...... .......+.+.
T Consensus 88 v~l~~~~~~~~l~~~i~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~ 161 (540)
T PRK06164 88 IAVNTRYRSHEVAHILGRGRARWLVVWPGFKGIDFAAILAAVPPDALPPLRAIAVVDDAADAT------PAPAPGARVQL 161 (540)
T ss_pred EecCCCCCcHHHHHHHHhcCccEEEEccccccccHHHHhhcccccccCCcceEEEeccCcccC------CCCCccccccc
Confidence 99999999999999999999999999876421 111111 11 11222110000 00000001111
Q ss_pred HhccCCCCC--CCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHHH
Q 019348 175 IELSGSVTD--IPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSV 252 (342)
Q Consensus 175 ~~~~~~~~~--~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~ 252 (342)
......... ........+++++++|||||||.||+|+++|.++...+.. ....+....++++++.+|++|.+|+ .
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~--~~~~~~~~~~~~~l~~~p~~~~~g~-~ 238 (540)
T PRK06164 162 FALPDPAPPAAAGERAADPDAGALLFTTSGTTSGPKLVLHRQATLLRHARA--IARAYGYDPGAVLLAALPFCGVFGF-S 238 (540)
T ss_pred ccccccCCcccccccCCCCCceEEEEECCCCCCCCcEEEEehHHHHHHHHH--HHHhcCCCCCCEEEEcCCchhHHHH-H
Confidence 110000000 0012234678999999999999999999999999987554 4444556788999999999999999 7
Q ss_pred HHHHHhhcCCeEEEccCCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeec-ccCCHHHHHHHHH
Q 019348 253 ILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGA-APLGKELMEDCQK 331 (342)
Q Consensus 253 ~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG-~~l~~~~~~~~~~ 331 (342)
.++.++..|+++++.+.+++..+++.++++++|+++++|.+++.|.+.. ....+++++|.+.++| .+....+.+++.+
T Consensus 239 ~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~l~~l~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 317 (540)
T PRK06164 239 TLLGALAGGAPLVCEPVFDAARTARALRRHRVTHTFGNDEMLRRILDTA-GERADFPSARLFGFASFAPALGELAALARA 317 (540)
T ss_pred HHHHHHhcCceEEecCCCCHHHHHHHHHHhCCeeecCCHHHHHHHHHhh-cccCCCcceeeeeeccCCcchHHHHHHHhh
Confidence 8999999999999999999999999999999999999999999998873 3456788999887765 5556677777766
Q ss_pred hCCCCcccccC
Q 019348 332 NIPGATIFQKI 342 (342)
Q Consensus 332 ~~~~~~l~~~Y 342 (342)
. ++++++.|
T Consensus 318 ~--~~~~~~~Y 326 (540)
T PRK06164 318 R--GVPLTGLY 326 (540)
T ss_pred c--CCceecce
Confidence 5 48888877
No 95
>PRK12476 putative fatty-acid--CoA ligase; Provisional
Probab=100.00 E-value=2.6e-37 Score=292.74 Aligned_cols=294 Identities=19% Similarity=0.277 Sum_probs=224.3
Q ss_pred CCCCCCCCCCHHHHHhhhcccCCCceEEEeCC-------CCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCh
Q 019348 19 LVLPSDPSFSMVHFLFRNSASYSSKLALIDAD-------SDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIH 91 (342)
Q Consensus 19 ~~~~~~~~~~l~~~l~~~~~~~p~~~a~~~~~-------~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~ 91 (342)
.+.+.. .|+.+++.+.++++|+++|+++.+ ..+.+||+||.+++.++|++|.+. +++||+|+++++|+++
T Consensus 28 ~~~~~~--~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~-~~~gd~V~l~~~n~~e 104 (612)
T PRK12476 28 IALPPG--TTLISLIERNIANVGDTVAYRYLDHSHSAAGCAVELTWTQLGVRLRAVGARLQQV-AGPGDRVAILAPQGID 104 (612)
T ss_pred ccCCcc--CcHHHHHHHHHHhCCCceEEEEEccCCCCCCcceEEeHHHHHHHHHHHHHHHHHh-cCCCCEEEEECCCChh
Confidence 344444 799999999999999999998642 124899999999999999999886 8999999999999999
Q ss_pred HHHHHHHHHHhCCeEecc-CCCCC--HHHHHHHhhhcCceEEEEcccchhhhhccC-------C-CeEEecCCCcccccc
Q 019348 92 FPICFLGVIAIGAIASTA-NPVYT--VSELSKQVKDSNPKLVITVPELWDKVKDLN-------L-PAVLLGSKDKVSSSG 160 (342)
Q Consensus 92 ~~~~~lA~~~~G~~~v~l-~~~~~--~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-------~-~~~~~~~~~~~~~~~ 160 (342)
++++++||+++|++++|+ ++..+ .+++.++++.+++++++++++....+.... . ..+.++..
T Consensus 105 ~~~~~lA~~~aG~v~vpl~~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~------- 177 (612)
T PRK12476 105 YVAGFFAAIKAGTIAVPLFAPELPGHAERLDTALRDAEPTVVLTTTAAAEAVEGFLRNLPRLRRPRVIAIDAI------- 177 (612)
T ss_pred HHHHHHHHHHcCceeEecCCCCcchhHHHHHHHHHhCCCCEEEEcHHHHHHHHHHHhhcccccCceEEEeccc-------
Confidence 999999999999999999 57766 789999999999999999877655433211 0 11111110
Q ss_pred ccccccccccHHHHHhccCCCCCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccc-cCCCeEEE
Q 019348 161 LISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELV-GELDHVVL 239 (342)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~-~~~~d~~~ 239 (342)
..... .........++++++|+|||||||.||||+++|+++...+.. ....+. +.++++.+
T Consensus 178 --------------~~~~~--~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~l~~~~~~--~~~~~~~~~~~~~~l 239 (612)
T PRK12476 178 --------------PDSAG--ESFVPVELDTDDVSHLQYTSGSTRPPVGVEITHRAVGTNLVQ--MILSIDLLDRNTHGV 239 (612)
T ss_pred --------------ccccc--ccccCCCCCCCceEEEEeCCCCCCCCceEEeeHHHHHHHHHH--HHHHhccCCCCceEE
Confidence 00000 111112345689999999999999999999999999876443 223344 56789999
Q ss_pred EccchhHHHHHHHHHHHHhhcCCeEEEccC--C--CHHHHHHHHH--hccceEEEecHHHHHHHHcCCC----CCccCCC
Q 019348 240 CVLPMFHVFGLSVILYDQLQKGNCVVSMGK--F--DIEMALRAIE--KYRVTVWWVVPPIILALAKNSL----VRKFDIS 309 (342)
Q Consensus 240 ~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~--~--~~~~~~~~i~--~~~~t~~~~~P~~l~~l~~~~~----~~~~~l~ 309 (342)
+.+|++|.+|+ ..++.++..|+++++..+ + ++..+++.++ +++++.++.+|.++..++.... ....+++
T Consensus 240 ~~~Pl~h~~g~-~~~~~~~~~gg~~~~~~~~~~~~~p~~~~~~i~~~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~l~ 318 (612)
T PRK12476 240 SWLPLYHDMGL-SMIGFPAVYGGHSTLMSPTAFVRRPQRWIKALSEGSRTGRVVTAAPNFAYEWAAQRGLPAEGDDIDLS 318 (612)
T ss_pred EeCCcccccch-HHHHHHHhcCCeEEEECHHHHHHHHHHHHHHHhhhccCCeEEEeCCcHHHHHHHHhcChhhhcCcchh
Confidence 99999999998 444444445555555432 3 8999999995 5899999999998887776421 1345688
Q ss_pred CceEEEeecccCCHHHHHHHHHhCC-----CCcccccC
Q 019348 310 SLKLVGSGAAPLGKELMEDCQKNIP-----GATIFQKI 342 (342)
Q Consensus 310 ~lr~~~~gG~~l~~~~~~~~~~~~~-----~~~l~~~Y 342 (342)
++| +++||+++++++.++|++.|+ ...+++.|
T Consensus 319 ~lr-~~~gg~~~~~~~~~~~~~~~~~~g~~~~~~~~~Y 355 (612)
T PRK12476 319 NVV-LIIGSEPVSIDAVTTFNKAFAPYGLPRTAFKPSY 355 (612)
T ss_pred Hhe-EEecccCCCHHHHHHHHHHHHhcCCCcccccccc
Confidence 999 999999999999999999873 23477776
No 96
>PRK05691 peptide synthase; Validated
Probab=100.00 E-value=6.2e-37 Score=336.50 Aligned_cols=287 Identities=21% Similarity=0.305 Sum_probs=244.1
Q ss_pred CCHHHHHhhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeE
Q 019348 27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA 106 (342)
Q Consensus 27 ~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~ 106 (342)
.++.++|.+.++.+||++|+++. ++.+||+||.+++.++|+.|++.|+++|++|+++++++.+++++++|++++|+++
T Consensus 1131 ~~l~~~~~~~a~~~p~~~Al~~~--~~~lTY~eL~~~~~~lA~~L~~~gv~~g~~V~i~~~~s~~~iv~~lailkaG~~~ 1208 (4334)
T PRK05691 1131 AWLPELLNEQARQTPERIALVWD--GGSLDYAELHAQANRLAHYLRDKGVGPDVCVAIAAERSPQLLVGLLAILKAGGAY 1208 (4334)
T ss_pred CCHHHHHHHHHHhCCCCeEEEEC--CceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEE
Confidence 58999999999999999999987 7799999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhccC-CCeEEecCCCccccccccccccccccHHHHHhccCCCCCCC
Q 019348 107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN-LPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIP 185 (342)
Q Consensus 107 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (342)
+|++|.++.+++.++++++++++++++......+.... ...+.++.. .... .. ....
T Consensus 1209 vpld~~~p~~rl~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~----~~--~~~~ 1266 (4334)
T PRK05691 1209 VPLDPDYPAERLAYMLADSGVELLLTQSHLLERLPQAEGVSAIALDSL----------------HLDS----WP--SQAP 1266 (4334)
T ss_pred EecCcCChHHHHHHHHHhcCCCEEEecchhhhhcccccCceEEeeccc----------------cccc----cC--CCCC
Confidence 99999999999999999999999999877655443321 111111110 0000 00 1111
Q ss_pred CCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHHHHHHHHhhcCCeEE
Q 019348 186 DVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVV 265 (342)
Q Consensus 186 ~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v 265 (342)
.....++++++++|||||||.||||+++|+++.+.+.. ....+.+.++|++++..|++|..++ ..++.+|..|++++
T Consensus 1267 ~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~--~~~~~~~~~~d~~l~~~~~~fd~s~-~~~~~~L~~G~~l~ 1343 (4334)
T PRK05691 1267 GLHLHGDNLAYVIYTSGSTGQPKGVGNTHAALAERLQW--MQATYALDDSDVLMQKAPISFDVSV-WECFWPLITGCRLV 1343 (4334)
T ss_pred CCCCCCCCeEEEEEcCCCCCCCceeEeecHHHHHHHHH--HHHhcCCCCCCEEEEeCCccHHHHH-HHHHHHHhCCCEEE
Confidence 12345789999999999999999999999999987544 4555667889999999999999988 78999999999999
Q ss_pred Ecc---CCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCCHHHHHHHHHhCCCCcccccC
Q 019348 266 SMG---KFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQKI 342 (342)
Q Consensus 266 ~~~---~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~Y 342 (342)
+.+ ..++..+++.++++++|++.++|++++.+..... ...+++||.+++||+++++++.++|.+.+++++++|.|
T Consensus 1344 i~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~~--~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~Y 1421 (4334)
T PRK05691 1344 LAGPGEHRDPQRIAELVQQYGVTTLHFVPPLLQLFIDEPL--AAACTSLRRLFSGGEALPAELRNRVLQRLPQVQLHNRY 1421 (4334)
T ss_pred EcCccccCCHHHHHHHHHHcCCeEEECcHHHHHHHHhCcc--cccCCcccEEEEeecCCCHHHHHHHHHhCCCcEEEeCC
Confidence 985 3689999999999999999999999999987542 34688999999999999999999999999889999998
No 97
>PRK08162 acyl-CoA synthetase; Validated
Probab=100.00 E-value=5.7e-36 Score=280.50 Aligned_cols=305 Identities=20% Similarity=0.259 Sum_probs=238.2
Q ss_pred CCCHHHHHhhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCe
Q 019348 26 SFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAI 105 (342)
Q Consensus 26 ~~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~ 105 (342)
++++.+.|.+.++.+|+++|+.+. +..+||+||.+++.++|..|.+.|+++||+|+++++|+++++++++||+++|++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~a~~~~--~~~~ty~~L~~~~~~~a~~L~~~g~~~g~~v~i~~~~~~~~~~~~lA~~~~G~~ 94 (545)
T PRK08162 17 PLTPLSFLERAAEVYPDRPAVIHG--DRRRTWAETYARCRRLASALARRGIGRGDTVAVLLPNIPAMVEAHFGVPMAGAV 94 (545)
T ss_pred cCCHHHHHHHHHHHCCCCeEEEEC--CeEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHHHHHhCcE
Confidence 368899999999999999999987 779999999999999999999999999999999999999999999999999999
Q ss_pred EeccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhcc----CC-CeEEecCCCccccccccccccccccHHHHHhccCC
Q 019348 106 ASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDL----NL-PAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGS 180 (342)
Q Consensus 106 ~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (342)
++|+++..+.+++.++++.++++.++++++....+.+. .. ..+.++....... .....+...+.++.....
T Consensus 95 ~vpl~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~- 170 (545)
T PRK08162 95 LNTLNTRLDAASIAFMLRHGEAKVLIVDTEFAEVAREALALLPGPKPLVIDVDDPEYP---GGRFIGALDYEAFLASGD- 170 (545)
T ss_pred EeccccccChHHHHHHHHhCCCeEEEEccchhhHHHHHHhhCCCCceEEEecCccccc---cCCCcccccHHHHhccCC-
Confidence 99999999999999999999999999998776654432 11 1222221110000 011122334555554322
Q ss_pred CCCCC-CCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHHHHHHHHhh
Q 019348 181 VTDIP-DVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQ 259 (342)
Q Consensus 181 ~~~~~-~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~ 259 (342)
.... ......++.++|+|||||||.||+|+++|+++...+.. .........++++++.+|++|.+++...++ ...
T Consensus 171 -~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~t~~~~~~~~~~--~~~~~~~~~~~~~l~~~pl~h~~~~~~~~~-~~~ 246 (545)
T PRK08162 171 -PDFAWTLPADEWDAIALNYTSGTTGNPKGVVYHHRGAYLNALS--NILAWGMPKHPVYLWTLPMFHCNGWCFPWT-VAA 246 (545)
T ss_pred -ccccccCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHH--HHHhcCCCCCCeeEeccCcHhhhhHHHHHH-HHH
Confidence 1111 11223457899999999999999999999987766433 233344567789999999999999844444 444
Q ss_pred cCCeEEEccCCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCCHHHHHHHHHhCCCCccc
Q 019348 260 KGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIF 339 (342)
Q Consensus 260 ~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~ 339 (342)
.|++.++..++++..+++.++++++|++.++|.+++.|++........+.+.+.++++|+++++++.+.+++. +++++
T Consensus 247 ~~g~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~ 324 (545)
T PRK08162 247 RAGTNVCLRKVDPKLIFDLIREHGVTHYCGAPIVLSALINAPAEWRAGIDHPVHAMVAGAAPPAAVIAKMEEI--GFDLT 324 (545)
T ss_pred HccEEEEeCCCCHHHHHHHHHHcCCeEEEechHHHHHHHhCccccccCCccceEEEECCCCCCHHHHHHHHHh--CCcee
Confidence 5666666677899999999999999999999999999998765444456667778899999999999999875 48898
Q ss_pred ccC
Q 019348 340 QKI 342 (342)
Q Consensus 340 ~~Y 342 (342)
+.|
T Consensus 325 ~~Y 327 (545)
T PRK08162 325 HVY 327 (545)
T ss_pred ecc
Confidence 887
No 98
>PRK08751 putative long-chain fatty acyl CoA ligase; Provisional
Probab=100.00 E-value=5.3e-36 Score=281.57 Aligned_cols=311 Identities=23% Similarity=0.377 Sum_probs=241.2
Q ss_pred CCCHHHHHhhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHH-HcCCCCCCEEEEECCCCChHHHHHHHHHHhCC
Q 019348 26 SFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFR-HLGITKKDVVLIFAPNSIHFPICFLGVIAIGA 104 (342)
Q Consensus 26 ~~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~-~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~ 104 (342)
..++.++|.+.++++|+++|+++. ++.+||+||.+++.++|+.|. +.|+++||+|+++++|+.+++++++||+++|+
T Consensus 24 ~~~~~~~l~~~~~~~~~~~a~~~~--~~~~Ty~el~~~~~~la~~L~~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~ 101 (560)
T PRK08751 24 FRTVAEVFATSVAKFADRPAYHSF--GKTITYREADQLVEQFAAYLLGELQLKKGDRVALMMPNCLQYPIATFGVLRAGL 101 (560)
T ss_pred CCcHHHHHHHHHHhCCCCceEEEC--CceeeHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHHhCe
Confidence 368999999999999999999986 789999999999999999996 68999999999999999999999999999999
Q ss_pred eEeccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhcc----CCCeEEecCCCc-cc--------------c-cccccc
Q 019348 105 IASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDL----NLPAVLLGSKDK-VS--------------S-SGLISR 164 (342)
Q Consensus 105 ~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~----~~~~~~~~~~~~-~~--------------~-~~~~~~ 164 (342)
+++|++|..+.+++.++++.++++++++++.....+... ....+....... .. . ....-.
T Consensus 102 ~~v~l~p~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (560)
T PRK08751 102 TVVNVNPLYTPRELKHQLIDSGASVLVVIDNFGTTVQQVIADTPVKQVITTGLGDMLGFPKAALVNFVVKYVKKLVPEYR 181 (560)
T ss_pred EEeccCccCCHHHHHHHHHhcCCeEEEEcchhHHHHHHHhhCCCccEEEEechhhhcccccchhhhhhhhhhhccccccC
Confidence 999999999999999999999999999987765544332 111122111000 00 0 000000
Q ss_pred ccccccHHHHHhccCCCCCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccc----cC-CCeEEE
Q 019348 165 SSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELV----GE-LDHVVL 239 (342)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~----~~-~~d~~~ 239 (342)
......+.+....... .........++++++++|||||||.||+|.++|.++...+... ...+. .. .+++++
T Consensus 182 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~ 258 (560)
T PRK08751 182 INGAIRFREALALGRK-HSMPTLQIEPDDIAFLQYTGGTTGVAKGAMLTHRNLVANMQQA--HQWLAGTGKLEEGCEVVI 258 (560)
T ss_pred CCccccHHHHHhccCC-CCCCCCCCCcccEEEEEcCCCCCCCCCEEEEccHHHHHHHHHH--HHhhccccccCCCCceEE
Confidence 1122234443332221 1122234567899999999999999999999999998764432 22221 22 246778
Q ss_pred EccchhHHHHHHHHHHHHhhcCCeEEEc-cCCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeec
Q 019348 240 CVLPMFHVFGLSVILYDQLQKGNCVVSM-GKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGA 318 (342)
Q Consensus 240 ~~~p~~~~~g~~~~~~~~l~~G~~~v~~-~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG 318 (342)
+..|++|.+++....+.++..|+++++. ..+++..+++.++++++|++..+|.++..+.+.....+.+++++|.+++||
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~l~~lr~v~~gG 338 (560)
T PRK08751 259 TALPLYHIFALTANGLVFMKIGGCNHLISNPRDMPGFVKELKKTRFTAFTGVNTLFNGLLNTPGFDQIDFSSLKMTLGGG 338 (560)
T ss_pred EecChHHHHHHHHhhhhHhhccceEEEecCcCCHHHHHHHHHhcceeEecChHHHHHHHHcCcCcCCcchhhheeeeeCC
Confidence 8899999999855667777788776665 467899999999999999999999999999987766667788999999999
Q ss_pred ccCCHHHHHHHHHhCCCCcccccC
Q 019348 319 APLGKELMEDCQKNIPGATIFQKI 342 (342)
Q Consensus 319 ~~l~~~~~~~~~~~~~~~~l~~~Y 342 (342)
+++++++.+.|++.++ +++++.|
T Consensus 339 ~~~~~~~~~~~~~~~~-~~~~~~Y 361 (560)
T PRK08751 339 MAVQRSVAERWKQVTG-LTLVEAY 361 (560)
T ss_pred CCCCHHHHHHHHHHhC-CeEEEee
Confidence 9999999999999886 8888877
No 99
>PRK07868 acyl-CoA synthetase; Validated
Probab=100.00 E-value=3.1e-36 Score=296.97 Aligned_cols=304 Identities=14% Similarity=0.179 Sum_probs=230.9
Q ss_pred CCHHHHHhhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeE
Q 019348 27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA 106 (342)
Q Consensus 27 ~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~ 106 (342)
.++.++|.+.++++||++|+++. ++++||+||.++++++|+.|++.|+++||+|+|+++|+++++++++||+++|+++
T Consensus 447 ~sl~~ll~~~a~~~pd~~Al~~~--~~~lTY~eL~~ra~rlA~~L~~~Gv~~Gd~VaI~~~n~~e~v~a~lA~~~aGav~ 524 (994)
T PRK07868 447 ISLGRIIAEQARDAPKGEFLLFD--GRVHTYEAVNRRINNVVRGLIAVGVRQGDRVGVLMETRPSALVAIAALSRLGAVA 524 (994)
T ss_pred ccHHHHHHHHHHHCCCCeEEEeC--CceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCEE
Confidence 78999999999999999999986 7899999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhccCCCeEEecCCCccccccccccccccccHHHHHhccCCCCC-CC
Q 019348 107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTD-IP 185 (342)
Q Consensus 107 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 185 (342)
+|++|. +++.++++.++++++|++++....+.......+.++....... . .........+++.......... ..
T Consensus 525 vpl~p~---~~l~~il~~s~~~~li~~~~~~~~~~~~~~~iiv~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~ 599 (994)
T PRK07868 525 VLMPPD---TDLAAAVRLGGVTEIITDPTNLEAARQLPGRVLVLGGGESRDL-D-LPDDADVIDMEKIDPDAVELPGWYR 599 (994)
T ss_pred EEeCCc---hhHHHHHhccCCeEEEEChHHHHHHHhcCceEEEecCCccccc-c-CCcchhhhhhhhcCcccccCCcccC
Confidence 999984 6899999999999999998776655444334444332110000 0 0000001111111110000000 00
Q ss_pred CCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHHHHHHHHhhcCCeEE
Q 019348 186 DVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVV 265 (342)
Q Consensus 186 ~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v 265 (342)
.....++++++|+|| ||||.||++.++|.++..... .....+.+..+|++++..|++|.+++...++..+..|++++
T Consensus 600 ~~~~~~dd~a~IiyT-gStgtpKpk~vt~~~~~~~~~--~~~~~~~l~~~d~~L~~~Pl~h~~gl~~~l~~~l~gG~~vv 676 (994)
T PRK07868 600 PNPGLARDLAFIAFS-TAGGELVAKQITNYRWALSAF--GTASAAALDRRDTVYCLTPLHHESGLLVSLGGAVVGGSRIA 676 (994)
T ss_pred CCCCCCCccEEEEEe-CCCCCcCcEEEehHHHHHHHH--hhhhhcCCCCCCeEEEecChHHHhHHHHHHHHHhccceEEE
Confidence 112235889999998 577777777677766554422 23334556789999999999999999555666777777788
Q ss_pred EccCCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCCHHHHHHHHHhCCCCcccccC
Q 019348 266 SMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQKI 342 (342)
Q Consensus 266 ~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~Y 342 (342)
+.+++++..+++.|+++++|+++++|++++.|++.......++++||.++ | +.+++++.+++++.||++++++.|
T Consensus 677 l~~~~~~~~~~~~I~~~~vT~~~~~Ps~l~~L~~~~~~~~~~~~slr~~~-g-~gl~~~l~~~~~~~~~~~~l~~~Y 751 (994)
T PRK07868 677 LSRGLDPDRFVQEVRQYGVTVVSYTWAMLREVVDDPAFVLHGNHPVRLFI-G-SGMPTGLWERVVEAFAPAHVVEFF 751 (994)
T ss_pred ecCCCCHHHHHHHHHHhCCcEEEeHHHHHHHHHhCcCCccCCCCceEEEe-c-CCCCHHHHHHHHHHhCchheeeee
Confidence 88889999999999999999999999999999987655555678999876 3 349999999999999878899887
No 100
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=100.00 E-value=3.4e-36 Score=303.87 Aligned_cols=299 Identities=19% Similarity=0.268 Sum_probs=236.8
Q ss_pred CCHHHHHhhhcccCC-CceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCe
Q 019348 27 FSMVHFLFRNSASYS-SKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAI 105 (342)
Q Consensus 27 ~~l~~~l~~~~~~~p-~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~ 105 (342)
.++.+.+.+.++++| ++.++.+. +++++||+||.++++++|+.|++ |+++||+|+++++|+++++++++||+++|++
T Consensus 631 ~~~~~~l~~~~~~~~~~~~ai~~~-~~~~~Ty~el~~~~~~lA~~L~~-g~~~gd~V~i~~~n~~~~~~~~la~~~~G~v 708 (1140)
T PRK06814 631 RTLFEALIEAAKIHGFKKLAVEDP-VNGPLTYRKLLTGAFVLGRKLKK-NTPPGENVGVMLPNANGAAVTFFALQSAGRV 708 (1140)
T ss_pred CCHHHHHHHHHHHcCCCCeEeECC-CCCccCHHHHHHHHHHHHHHHHh-cCCCCCeEEEEcCCchHHHHHHHHHHHCCCE
Confidence 578888888888887 55666653 36899999999999999999976 9999999999999999999999999999999
Q ss_pred EeccCCCCCHHHHHHHhhhcCceEEEEcccchhhhh------ccC--CCeEEecCCCccccccccccccccccHHHHHhc
Q 019348 106 ASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVK------DLN--LPAVLLGSKDKVSSSGLISRSSKIVSFHDLIEL 177 (342)
Q Consensus 106 ~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (342)
+++++|..+.+++.++++++++++++++++..+... +.. ...+.++... .....+..+.+....
T Consensus 709 ~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--------~~~~~~~~~~~~~~~ 780 (1140)
T PRK06814 709 PAMINFSAGIANILSACKAAQVKTVLTSRAFIEKARLGPLIEALEFGIRIIYLEDVR--------AQIGLADKIKGLLAG 780 (1140)
T ss_pred EEEcCCCCCHHHHHHHHHHcCCCEEEecHHHHhhhcchhHHHHhccCceEEEehHhh--------ccCChHHHHHHHhhc
Confidence 999999999999999999999999999876543221 111 1122222110 000001111111111
Q ss_pred cCCCCCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHHHHHHHH
Q 019348 178 SGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQ 257 (342)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~ 257 (342)
.. .........++++++|+|||||||.||||.+||+++.+.+.. .........+|++++.+|++|.+++...++.+
T Consensus 781 ~~--~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~--~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~ 856 (1140)
T PRK06814 781 RF--PLVYFCNRDPDDPAVILFTSGSEGTPKGVVLSHRNLLANRAQ--VAARIDFSPEDKVFNALPVFHSFGLTGGLVLP 856 (1140)
T ss_pred cC--CccccCCCCCCCcEEEEECCCccCCCcEEEecHHHHHHHHHH--HHHhhCCCCcCEEEEecchHHHHHHHHHHHHH
Confidence 11 111111346789999999999999999999999999887554 34455567889999999999999987778999
Q ss_pred hhcCCeEEEccC-CCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCCHHHHHHHHHhCCCC
Q 019348 258 LQKGNCVVSMGK-FDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGA 336 (342)
Q Consensus 258 l~~G~~~v~~~~-~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~ 336 (342)
+..|+++++.++ .+...+.+.++++++|++..+|++++.+.+.. ...+++++|.+++||+++++++.+++++.++ +
T Consensus 857 l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~--~~~~~~~lr~v~~gg~~l~~~~~~~~~~~~~-~ 933 (1140)
T PRK06814 857 LLSGVKVFLYPSPLHYRIIPELIYDTNATILFGTDTFLNGYARYA--HPYDFRSLRYVFAGAEKVKEETRQTWMEKFG-I 933 (1140)
T ss_pred HHcCCEEEEecCcccHHHHHHHHHhcCCEEEEecHHHHHHHHhhc--ccccccceeEEEEcCCcCCHHHHHHHHHHhC-C
Confidence 999999998764 56788899999999999999999999988763 3456889999999999999999999999997 8
Q ss_pred cccccC
Q 019348 337 TIFQKI 342 (342)
Q Consensus 337 ~l~~~Y 342 (342)
++++.|
T Consensus 934 ~~~~~Y 939 (1140)
T PRK06814 934 RILEGY 939 (1140)
T ss_pred cEEecc
Confidence 999888
No 101
>PRK13390 acyl-CoA synthetase; Provisional
Probab=100.00 E-value=3.6e-36 Score=279.04 Aligned_cols=289 Identities=23% Similarity=0.291 Sum_probs=223.9
Q ss_pred hhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeEeccCCCCC
Q 019348 35 RNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYT 114 (342)
Q Consensus 35 ~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~ 114 (342)
..++++|+++|+++.++++++||+||.++++++|+.|.++|+++||+|+++++|+++++++++||+++|++++++++..+
T Consensus 5 ~~a~~~p~~~a~~~~~~~~~lTy~el~~~~~~la~~L~~~gv~~gd~V~i~~~n~~~~~~~~la~~~~Ga~~~~l~~~~~ 84 (501)
T PRK13390 5 THAQIAPDRPAVIVAETGEQVSYRQLDDDSAALARVLYDAGLRTGDVVALLSDNSPEALVVLWAALRSGLYITAINHHLT 84 (501)
T ss_pred hhhhhCCCCcEEEecCCCeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEeccccCCC
Confidence 35677899999997655789999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcCceEEEEcccchhhhhccCC--Ce-EEecCCCccccccccccccccccHHHHHhccCCCCCCCCCCCCC
Q 019348 115 VSELSKQVKDSNPKLVITVPELWDKVKDLNL--PA-VLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQ 191 (342)
Q Consensus 115 ~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (342)
.+++.++++.++++++++++........... .. +.... .......+++...... . .....
T Consensus 85 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~--~----~~~~~ 147 (501)
T PRK13390 85 APEADYIVGDSGARVLVASAALDGLAAKVGADLPLRLSFGG-----------EIDGFGSFEAALAGAG--P----RLTEQ 147 (501)
T ss_pred HHHHHHHHHhcCCcEEEEcchhhhHHHHhhhccceEEEecC-----------cccccccHHHHhcccC--C----CCCCC
Confidence 9999999999999999998765443322211 11 11110 0011122333322111 0 01122
Q ss_pred CCeEEEEcCCCCCCCchhhhH--hHHHHHHHhhhh--hhhhccccCCCeEEEEccchhHHHHHHHHHHHHhhcCCeEEEc
Q 019348 192 TDAAALLYSSGTTGVSKGVIL--THKNFIAASLMI--SAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSM 267 (342)
Q Consensus 192 ~~~~~i~~TSGtTG~pK~v~~--t~~~l~~~~~~~--~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~ 267 (342)
++.++|+|||||||.||+|++ +|.++....... .....+....+|+++..+|++|.+++ ...+..+..|+++++.
T Consensus 148 ~~~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~~~-~~~~~~~~~g~~~~~~ 226 (501)
T PRK13390 148 PCGAVMLYSSGTTGFPKGIQPDLPGRDVDAPGDPIVAIARAFYDISESDIYYSSAPIYHAAPL-RWCSMVHALGGTVVLA 226 (501)
T ss_pred cccEEEEeCCCCCCCCCEEEeeccccccccchhhhHhhHHHHhCCCCCCeEEecccchhhhHH-HHHHHHHhcCceEEEc
Confidence 357999999999999999995 555544321110 01233456788999999999999987 4445567889999999
Q ss_pred cCCCHHHHHHHHHhccceEEEecHHHHHHHHcCCC--CCccCCCCceEEEeecccCCHHHHHHHHHhCCCCcccccC
Q 019348 268 GKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSL--VRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQKI 342 (342)
Q Consensus 268 ~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~--~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~Y 342 (342)
+.+++..+++.++++++|++.++|+++..+..... ....+++++|.++.||+++++++.+.+++.++ .++++.|
T Consensus 227 ~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~l~~v~~~g~~~~~~~~~~~~~~~~-~~~~~~Y 302 (501)
T PRK13390 227 KRFDAQATLGHVERYRITVTQMVPTMFVRLLKLDADVRTRYDVSSLRAVIHAAAPCPVDVKHAMIDWLG-PIVYEYY 302 (501)
T ss_pred CCcCHHHHHHHHHHcCCeEEEecHHHHHHHHhccchhcccCChhhhheEEEcCCCCCHHHHHHHHHhcC-Cceeeee
Confidence 98999999999999999999999999999887542 23456789999999999999999999999887 7888877
No 102
>PRK08974 long-chain-fatty-acid--CoA ligase; Validated
Probab=100.00 E-value=2.5e-35 Score=276.97 Aligned_cols=312 Identities=26% Similarity=0.387 Sum_probs=240.5
Q ss_pred CCHHHHHhhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHH-HcCCCCCCEEEEECCCCChHHHHHHHHHHhCCe
Q 019348 27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFR-HLGITKKDVVLIFAPNSIHFPICFLGVIAIGAI 105 (342)
Q Consensus 27 ~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~-~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~ 105 (342)
.++.++|...++++|+++|+++. ++++||.||.++++++|..|+ +.|+++|++|+++++|+.+++++++||+++|++
T Consensus 23 ~~l~~~l~~~a~~~p~~~a~~~~--~~~lTy~~l~~~~~~la~~L~~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~ 100 (560)
T PRK08974 23 QSLVDMFEQAVARYADQPAFINM--GEVMTFRKLEERSRAFAAYLQNGLGLKKGDRVALMMPNLLQYPIALFGILRAGMI 100 (560)
T ss_pred ccHHHHHHHHHHhCCCCceEEEC--CccccHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcE
Confidence 57999999999999999999986 789999999999999999998 489999999999999999999999999999999
Q ss_pred EeccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhcc----CCCeEEecCCCcccccc----------------ccccc
Q 019348 106 ASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDL----NLPAVLLGSKDKVSSSG----------------LISRS 165 (342)
Q Consensus 106 ~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~----------------~~~~~ 165 (342)
++|++|..+.+++.++++.+++++++++++....+... ....+............ .....
T Consensus 101 ~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (560)
T PRK08974 101 VVNVNPLYTPRELEHQLNDSGAKAIVIVSNFAHTLEKVVFKTPVKHVILTRMGDQLSTAKGTLVNFVVKYIKRLVPKYHL 180 (560)
T ss_pred EeccCccCCHHHHHHHHHhcCceEEEEeccccHHHHHHhhhcCcceEEEecccccccccccccccchhhhcccccccccC
Confidence 99999999999999999999999999987655443322 11222211100000000 00000
Q ss_pred cccccHHHHHhccCCCCCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhh-ccccCCCeEEEEccch
Q 019348 166 SKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQ-ELVGELDHVVLCVLPM 244 (342)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~-~~~~~~~d~~~~~~p~ 244 (342)
.....+.+....... ..........+++++|+|||||||.||+|.++|.++..+........ ......++.++..+|+
T Consensus 181 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 259 (560)
T PRK08974 181 PDAISFRSALHKGRR-MQYVKPELVPEDLAFLQYTGGTTGVAKGAMLTHRNMLANLEQAKAAYGPLLHPGKELVVTALPL 259 (560)
T ss_pred CCcccHHHHhhccCC-CCCCCCCCCCCCeEEEEECCCCCCCCcEEEEchHHHHHHHHHHHHhhccccCCCccEEEEeCcH
Confidence 111222222221110 11112234678999999999999999999999999987643321111 1112356788899999
Q ss_pred hHHHHHHHHHHHHhhcCCeEEEc-cCCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCCH
Q 019348 245 FHVFGLSVILYDQLQKGNCVVSM-GKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGK 323 (342)
Q Consensus 245 ~~~~g~~~~~~~~l~~G~~~v~~-~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~ 323 (342)
+|.+++....+.++..|+++++. +..++..+++.++++++|.+.++|++++.+.........+++++|.+++||+++++
T Consensus 260 ~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~gg~~~~~ 339 (560)
T PRK08974 260 YHIFALTVNCLLFIELGGQNLLITNPRDIPGFVKELKKYPFTAITGVNTLFNALLNNEEFQELDFSSLKLSVGGGMAVQQ 339 (560)
T ss_pred HHHHHHHHHHHHHhhcCCeEEEecCccCHHHHHHHHHhcCcceEcCcHHHHHHHHhCcCcccCCccceeEEEecCccCCH
Confidence 99999866778888999987776 45688999999999999999999999999998776666678899999999999999
Q ss_pred HHHHHHHHhCCCCcccccC
Q 019348 324 ELMEDCQKNIPGATIFQKI 342 (342)
Q Consensus 324 ~~~~~~~~~~~~~~l~~~Y 342 (342)
.+.++|++.++ +++++.|
T Consensus 340 ~~~~~~~~~~g-~~~~~~Y 357 (560)
T PRK08974 340 AVAERWVKLTG-QYLLEGY 357 (560)
T ss_pred HHHHHHHHHhC-CcEEeee
Confidence 99999999886 8898887
No 103
>PRK05850 acyl-CoA synthetase; Validated
Probab=100.00 E-value=2.1e-36 Score=285.28 Aligned_cols=292 Identities=20% Similarity=0.247 Sum_probs=224.0
Q ss_pred CCHHHHHhhhcccCCCceEEEeCC-------CCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHH
Q 019348 27 FSMVHFLFRNSASYSSKLALIDAD-------SDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGV 99 (342)
Q Consensus 27 ~~l~~~l~~~~~~~p~~~a~~~~~-------~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~ 99 (342)
+++.++|.+.+..+|+++|+++.+ ..+++||+||.+++.++|+.|.+.| .+||+|+++++|+++++++++||
T Consensus 1 ~s~~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~lty~eL~~~v~~~A~~L~~~g-~~gd~V~l~~~n~~~~~~~~lA~ 79 (578)
T PRK05850 1 SSVPSLLRERASLQPDDAAFTFIDYEQDPAGVAETLTWSQLYRRTLNVAEELRRHG-STGDRAVILAPQGLEYIVAFLGA 79 (578)
T ss_pred CcHHHHHHHHHhcCCCceEEEEEccCCCCCCceeeecHHHHHHHHHHHHHHHHHhC-CCCCEEEEEcCCcccHHHHHHHH
Confidence 468899999999999999998642 1278999999999999999999999 68999999999999999999999
Q ss_pred HHhCCeEeccCC---CCCHHHHHHHhhhcCceEEEEcccchhhhhccC-------CC-eEEecCCCcccccccccccccc
Q 019348 100 IAIGAIASTANP---VYTVSELSKQVKDSNPKLVITVPELWDKVKDLN-------LP-AVLLGSKDKVSSSGLISRSSKI 168 (342)
Q Consensus 100 ~~~G~~~v~l~~---~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-------~~-~~~~~~~~~~~~~~~~~~~~~~ 168 (342)
+++|++++|+++ ..+.+++.++++.+++++++++++....+.+.. .. .+.++..
T Consensus 80 ~~~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------- 144 (578)
T PRK05850 80 LQAGLIAVPLSVPQGGAHDERVSAVLRDTSPSVVLTTSAVVDDVTEYVAPQPGQSAPPVIEVDLL--------------- 144 (578)
T ss_pred HHcCceEEecCCCCccchHHHHHHHHHhcCCCEEEEcHHHHHHHHHHHhhcccccccceEeeccc---------------
Confidence 999999999997 457889999999999999999987766554321 00 1111000
Q ss_pred ccHHHHHhccCCCCCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhh-cc---ccCCCeEEEEccch
Q 019348 169 VSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQ-EL---VGELDHVVLCVLPM 244 (342)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~-~~---~~~~~d~~~~~~p~ 244 (342)
++.. . .........++++++|+|||||||.||||+++|++++..+....... .. ....++++++..|+
T Consensus 145 ----~~~~--~--~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl 216 (578)
T PRK05850 145 ----DLDS--P--RGSDARPRDLPSTAYLQYTSGSTRTPAGVMVSHRNVIANFEQLMSDYFGDTGGVPPPDTTVVSWLPF 216 (578)
T ss_pred ----cccc--C--CccccCCCCCCCeEEEEeCCCCCCCCceEEEeHHHHHHHHHHHHHhhccccccCCCCcceEEEECCC
Confidence 0000 0 00111234568999999999999999999999999987644321111 11 12457899999999
Q ss_pred hHHHHHHHHHHHHhhcCCeEEEccCC----CHHHHHHHHHhccceEEEecHHHHHHHHcCC---CCCccCCCCceEEEee
Q 019348 245 FHVFGLSVILYDQLQKGNCVVSMGKF----DIEMALRAIEKYRVTVWWVVPPIILALAKNS---LVRKFDISSLKLVGSG 317 (342)
Q Consensus 245 ~~~~g~~~~~~~~l~~G~~~v~~~~~----~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~---~~~~~~l~~lr~~~~g 317 (342)
+|.+|++..++.++..|+++++.++. ++..+++.++++++++...++..+..+.... .....+++++|.+++|
T Consensus 217 ~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~p~~~~~~i~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lr~~~~g 296 (578)
T PRK05850 217 YHDMGLVLGVCAPILGGCPAVLTSPVAFLQRPARWMQLLASNPHAFSAAPNFAFELAVRKTSDDDMAGLDLGGVLGIISG 296 (578)
T ss_pred CCCchhHHHHHHHHhcCCcEEEeCHHHHHHCHHHHHHHHHHcCCeEEeCCcHHHHHHHHhcchhhhcCcchhhheeEEEC
Confidence 99999977899999999999998642 7899999999999986644444444444322 1223467899999999
Q ss_pred cccCCHHHHHHHHHhCC-----CCcccccC
Q 019348 318 AAPLGKELMEDCQKNIP-----GATIFQKI 342 (342)
Q Consensus 318 G~~l~~~~~~~~~~~~~-----~~~l~~~Y 342 (342)
|+++++++.++|.+.|+ +..+++.|
T Consensus 297 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y 326 (578)
T PRK05850 297 SERVHPATLKRFADRFAPFNLRETAIRPSY 326 (578)
T ss_pred cCCCCHHHHHHHHHHHHhcCcCcccccCcc
Confidence 99999999999999874 23577766
No 104
>PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated
Probab=100.00 E-value=1.5e-36 Score=282.71 Aligned_cols=287 Identities=13% Similarity=0.132 Sum_probs=218.2
Q ss_pred HHHHHhhhcccCCCceEEEeCCCC--cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeE
Q 019348 29 MVHFLFRNSASYSSKLALIDADSD--ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA 106 (342)
Q Consensus 29 l~~~l~~~~~~~p~~~a~~~~~~~--~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~ 106 (342)
+.+.|.+.++++|+++|+++.+.+ +++||+||.++++++|..|.+. ++||+|+|+++|+++++++++||+++|+++
T Consensus 4 ~~~~l~~~~~~~~~~~a~~~~~~~~~~~~ty~el~~~~~~lA~~L~~~--~~g~~V~l~~~~~~e~~~~~la~~~~G~~~ 81 (525)
T PRK05851 4 LAAALSDAMTASGRDLVVLDRESGLWRRHPWPEVHGRAENVAARLLDR--DRPGAVGLVGEPTVELVAAIQGAWLAGAAV 81 (525)
T ss_pred HHHHHHHHhcCCCCceEEeCCCCCcceeecHHHHHHHHHHHHHHHHhc--CCCCeEEEEcCCCHHHHHHHHHHHHcCCCC
Confidence 788999999999999999987433 7899999999999999999887 799999999999999999999999999986
Q ss_pred eccCCC-------CCHHHHHHHhhhcCceEEEEcccchhhhhccCCCeEEecCCCccccccccccccccccHHHHHhccC
Q 019348 107 STANPV-------YTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSG 179 (342)
Q Consensus 107 v~l~~~-------~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (342)
++++.. ...+++.++++.+++++++++++....+...... +.+. .+.......
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~-~~~~------------------~~~~~~~~~- 141 (525)
T PRK05851 82 SILPGPVRGADDGRWADATLTRFAGIGVRTVLSHGSHLERLRAVDSS-VTVH------------------DLATAAHTN- 141 (525)
T ss_pred cCCCCCCCccchhhHHHHHHHHHHhcCCCEEEeCHHHHHHHHHhhcc-cccc------------------ccccccccc-
Confidence 543311 2234566778999999999987765544322110 0000 000000000
Q ss_pred CCCCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccC-CCeEEEEccchhHHHHHHHHHHHHh
Q 019348 180 SVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGE-LDHVVLCVLPMFHVFGLSVILYDQL 258 (342)
Q Consensus 180 ~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~-~~d~~~~~~p~~~~~g~~~~~~~~l 258 (342)
.........++++++|+|||||||.||||++||.++...+.. ....+... .+|++++.+|++|.+++ ..++.++
T Consensus 142 --~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~--~~~~~~~~~~~d~~l~~~pl~h~~g~-~~~~~~l 216 (525)
T PRK05851 142 --RSASLTPPDSGGPAVLQGTAGSTGTPRTAILSPGAVLSNLRG--LNARVGLDAATDVGCSWLPLYHDMGL-AFLLTAA 216 (525)
T ss_pred --ccccCCCCCCCCeEEEEeCCCCCCCCcEEEecHHHHHHHHHH--HHHHhCCCCCCCeEEEcCCCccCccH-HHHHHHH
Confidence 000111235689999999999999999999999999987655 34445556 78999999999999999 6788999
Q ss_pred hcCCeEEEccC--C--CHHHHHHHHHhccceEEEecHHHHHHHHcCCC-CCccCCCCceEEEeecccCCHHHHHHHHHh-
Q 019348 259 QKGNCVVSMGK--F--DIEMALRAIEKYRVTVWWVVPPIILALAKNSL-VRKFDISSLKLVGSGAAPLGKELMEDCQKN- 332 (342)
Q Consensus 259 ~~G~~~v~~~~--~--~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~-~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~- 332 (342)
..|+++++.+. + ++..+++.++++++|++..+|.++..+.+... ....++++||.+++||+++++++.++|++.
T Consensus 217 ~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~p~~~~~~l~~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~ 296 (525)
T PRK05851 217 LAGAPLWLAPTTAFSASPFRWLSWLSDSRATLTAAPNFAYNLIGKYARRVSDVDLGALRVALNGGEPVDCDGFERFATAM 296 (525)
T ss_pred HcCCeEEEcCHHHHHHCHHHHHHHHHHhCCeEEeCCcHHHHHHHHhhccccCCCHHHhheeEeccccCCHHHHHHHHHHH
Confidence 99999999763 4 67899999999999988666655555543321 234567899999999999999999999875
Q ss_pred --CC--CCcccccC
Q 019348 333 --IP--GATIFQKI 342 (342)
Q Consensus 333 --~~--~~~l~~~Y 342 (342)
+| +..+++.|
T Consensus 297 ~~~g~~~~~~~~~Y 310 (525)
T PRK05851 297 APFGFDAGAAAPSY 310 (525)
T ss_pred hhcCCChhhccccc
Confidence 33 23478777
No 105
>PRK07787 acyl-CoA synthetase; Validated
Probab=100.00 E-value=8.3e-36 Score=274.39 Aligned_cols=264 Identities=21% Similarity=0.217 Sum_probs=220.3
Q ss_pred cccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeEeccCCCCCHH
Q 019348 37 SASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVS 116 (342)
Q Consensus 37 ~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~ 116 (342)
....++++|+++. ++++||+||.++++++|..|+ ++|+|+++++|+++++++++||+++|++++|+++..+.+
T Consensus 10 ~~~~~~~~a~~~~--~~~~Ty~el~~~~~~~a~~L~-----~~~~V~l~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~ 82 (471)
T PRK07787 10 AAAADIADAVRIG--GRVLSRSDLAGAATAVAERVA-----GARRVAVLATPTLATVLAVVGALIAGVPVVPVPPDSGVA 82 (471)
T ss_pred hcccCCceEEEeC--CcEEEHHHHHHHHHHHHHHhc-----cCCEEEEECCCCHHHHHHHHHHHhcCcEEeecCCCCChH
Confidence 3456799999987 889999999999999999996 479999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCceEEEEcccchhhhhccCCCeEEecCCCccccccccccccccccHHHHHhccCCCCCCCCCCCCCCCeEE
Q 019348 117 ELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAA 196 (342)
Q Consensus 117 ~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (342)
++.++++++++++++++.+... ...+....... .. .........+++.++
T Consensus 83 ~l~~~l~~~~~~~il~~~~~~~----~~~~~~~~~~~--------------~~------------~~~~~~~~~~~~~a~ 132 (471)
T PRK07787 83 ERRHILADSGAQAWLGPAPDDP----AGLPHVPVRLH--------------AR------------SWHRYPEPDPDAPAL 132 (471)
T ss_pred HHHHHHHhcCCCEEEecCCccc----ccccceeeecc--------------cc------------ccccCCCCCCCceEE
Confidence 9999999999999999763110 00111100000 00 000111245689999
Q ss_pred EEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHHHHHHHHhhcCCeEEEccCCCHHHHH
Q 019348 197 LLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMAL 276 (342)
Q Consensus 197 i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~ 276 (342)
++|||||||.||+|.++|+++...+.. ....+...++|++++.+|++|.+|+...++.++..|+++++.+.+++..++
T Consensus 133 i~~TSGTTG~PK~v~~t~~~l~~~~~~--~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~ 210 (471)
T PRK07787 133 IVYTSGTTGPPKGVVLSRRAIAADLDA--LAEAWQWTADDVLVHGLPLFHVHGLVLGVLGPLRIGNRFVHTGRPTPEAYA 210 (471)
T ss_pred EEECCCCCCCCCEEEEeHHHHHHHHHH--HHHhcCCCccceeEeccCCeeechhHHHHHHHHhcCCEEEecCCCCHHHHH
Confidence 999999999999999999999987554 334455678899999999999999977899999999999999889999999
Q ss_pred HHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCCHHHHHHHHHhCCCCcccccC
Q 019348 277 RAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQKI 342 (342)
Q Consensus 277 ~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~Y 342 (342)
+.++ +++|++.++|.++..|++.... ...++++|.+++||+++++.+.++|.+.++ .++++.|
T Consensus 211 ~~i~-~~~t~~~~~P~~~~~l~~~~~~-~~~l~~l~~~~~gg~~~~~~~~~~~~~~~~-~~~~~~Y 273 (471)
T PRK07787 211 QALS-EGGTLYFGVPTVWSRIAADPEA-ARALRGARLLVSGSAALPVPVFDRLAALTG-HRPVERY 273 (471)
T ss_pred HHHh-hCceEEEcchHHHHHHHhCccc-cccccceeEEEECCCCCCHHHHHHHHHHcC-CCeeccc
Confidence 9999 9999999999999999875432 346789999999999999999999999887 8899887
No 106
>PRK13391 acyl-CoA synthetase; Provisional
Probab=100.00 E-value=3.1e-35 Score=273.39 Aligned_cols=293 Identities=23% Similarity=0.266 Sum_probs=230.2
Q ss_pred hhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeEeccCCCC
Q 019348 34 FRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVY 113 (342)
Q Consensus 34 ~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~ 113 (342)
...++++||++|+++.+.++.+||.||.+++.++++.|.+.|+++|++|+++++|+++++++++||+++|++++++++..
T Consensus 4 ~~~a~~~p~~~a~~~~~~~~~~ty~~l~~~~~~la~~L~~~g~~~~~~V~v~~~~~~~~~~~~~a~~~~G~~~~~l~~~~ 83 (511)
T PRK13391 4 GIHAQTTPDKPAVIMASTGEVVTYRELDERSNRLAHLFRSLGLKRGDHVAIFMENNLRYLEVCWAAERSGLYYTCVNSHL 83 (511)
T ss_pred hhhHhhCCCceEEEecCCCCEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhccEEecccccc
Confidence 45678899999999865578999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHhhhcCceEEEEcccchhhhhccC-----C-CeEEecCCCccccccccccccccccHHHHHhccCCCCCCCCC
Q 019348 114 TVSELSKQVKDSNPKLVITVPELWDKVKDLN-----L-PAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDV 187 (342)
Q Consensus 114 ~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (342)
+.+++.++++.++++.++++........+.. . ..+.+... ........+.+...... ...
T Consensus 84 ~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~-----~~~ 149 (511)
T PRK13391 84 TPAEAAYIVDDSGARALITSAAKLDVARALLKQCPGVRHRLVLDGD---------GELEGFVGYAEAVAGLP-----ATP 149 (511)
T ss_pred CHHHHHHHHhccCCcEEEEchhhHHHHHHHHhcCCCceEEEEecCC---------CCCcccccHHHHhcCCC-----CCC
Confidence 9999999999999999999977655443221 1 11222211 01112223333332111 111
Q ss_pred CCCCCCeEEEEcCCCCCCCchhhhH--hHHHHHHHhhh-hhhhhccccCCCeEEEEccchhHHHHHHHHHHHHhhcCCeE
Q 019348 188 SVKQTDAAALLYSSGTTGVSKGVIL--THKNFIAASLM-ISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCV 264 (342)
Q Consensus 188 ~~~~~~~~~i~~TSGtTG~pK~v~~--t~~~l~~~~~~-~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~ 264 (342)
....++.++++|||||||.||+|.+ +|.++...... ......+....++++++..|++|.+++ ...+.++..|+++
T Consensus 150 ~~~~~~~a~il~TSGtTG~PKgv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~h~~~~-~~~~~~~~~g~~~ 228 (511)
T PRK13391 150 IADESLGTDMLYSSGTTGRPKGIKRPLPEQPPDTPLPLTAFLQRLWGFRSDMVYLSPAPLYHSAPQ-RAVMLVIRLGGTV 228 (511)
T ss_pred CCCcccccEEEECCCCCCCCCEEEEccccchhhhhhHHHHHHHHhcCCCCCCeEEEcCCHHHHHHH-HHHHHHHHcCceE
Confidence 1233467899999999999999984 46554332111 112333445678999999999999998 6778899999999
Q ss_pred EEccCCCHHHHHHHHHhccceEEEecHHHHHHHHcCCC--CCccCCCCceEEEeecccCCHHHHHHHHHhCCCCcccccC
Q 019348 265 VSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSL--VRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQKI 342 (342)
Q Consensus 265 v~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~--~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~Y 342 (342)
++.+.+++..+++.++++++|++.++|+++..+.+... ....+++++|.+++||+++++++.+++++.++ ..+++.|
T Consensus 229 ~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~~~~gg~~~~~~~~~~~~~~~g-~~v~~~Y 307 (511)
T PRK13391 229 IVMEHFDAEQYLALIEEYGVTHTQLVPTMFSRMLKLPEEVRDKYDLSSLEVAIHAAAPCPPQVKEQMIDWWG-PIIHEYY 307 (511)
T ss_pred EECCCCCHHHHHHHHHHhCCeEEEehHHHHHHHHhCchhhcccCCccceeEEEEccCCCCHHHHHHHHHHcC-Cceeeee
Confidence 99999999999999999999999999999998876543 23346889999999999999999999999887 7888877
No 107
>PRK09192 acyl-CoA synthetase; Validated
Probab=100.00 E-value=1.4e-35 Score=279.51 Aligned_cols=300 Identities=19% Similarity=0.225 Sum_probs=231.7
Q ss_pred CCCCCCCCCCCHHHHHhhhcccCCCceEEEeCCC--CcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHH
Q 019348 18 PLVLPSDPSFSMVHFLFRNSASYSSKLALIDADS--DESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPIC 95 (342)
Q Consensus 18 ~~~~~~~~~~~l~~~l~~~~~~~p~~~a~~~~~~--~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~ 95 (342)
+.+++.. .++.+++...++++|+..++ +.+. .+.+||.||++++.++|.+|++.|+++||+|+++++|+++++++
T Consensus 14 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~gi~~gd~V~l~~~n~~~~~~~ 90 (579)
T PRK09192 14 PRRYADF--PTLVEALDYAALGEAGMNFY-DRRGQLEEALPYQTLRARAEAGARRLLALGLKPGDRVALIAETDGDFVEA 90 (579)
T ss_pred cccccch--hhHHHHHHHhhccCCceEEE-ecCCCEEEEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCchhHHHH
Confidence 3455555 79999999999998866654 4322 26899999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCeEeccCCCCC-------HHHHHHHhhhcCceEEEEcccchhhhhccC--CCeEEecCCCcccccccccccc
Q 019348 96 FLGVIAIGAIASTANPVYT-------VSELSKQVKDSNPKLVITVPELWDKVKDLN--LPAVLLGSKDKVSSSGLISRSS 166 (342)
Q Consensus 96 ~lA~~~~G~~~v~l~~~~~-------~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 166 (342)
++||+++|++++|+++..+ .+++.++++.+++++++++++....+.+.. ...+.
T Consensus 91 ~lA~~~~G~~~v~i~~~~~~~~~~~~~~~l~~~i~~~~~~~il~~~~~~~~~~~~~~~~~~~~----------------- 153 (579)
T PRK09192 91 FFACQYAGLVPVPLPLPMGFGGRESYIAQLRGMLASAQPAAIITPDELLPWVNEATHGNPLLH----------------- 153 (579)
T ss_pred HHHHHHcCCeeEeccCCcccccchHHHHHHHHHHHhcCCCEEEeChHHHHHHHHhhccccccc-----------------
Confidence 9999999999999987543 588999999999999999987665544321 11000
Q ss_pred ccccHHHHHhccCCCCCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhh-ccccCCCeEEEEccchh
Q 019348 167 KIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQ-ELVGELDHVVLCVLPMF 245 (342)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~-~~~~~~~d~~~~~~p~~ 245 (342)
...+.++..... .........++++++|+|||||||.||+|.++|++++..... ... .+....+|++++++|++
T Consensus 154 -~~~~~~~~~~~~--~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~--~~~~~~~~~~~d~~l~~~p~~ 228 (579)
T PRK09192 154 -VLSHAWFKALPE--ADVALPRPTPDDIAYLQYSSGSTRFPRGVIITHRALMANLRA--ISHDGLKVRPGDRCVSWLPFY 228 (579)
T ss_pred -eeehhhhcccCC--CccccCCCCCCCeEEEEecCCCCCCCceEEeeHHHHHHHHHH--HHhhcccCCCCCeEEEeCCCC
Confidence 112222221111 111122345689999999999999999999999999987544 233 55567889999999999
Q ss_pred HHHHHHHHHHHHhhcCCeEEEccC----CCHHHHHHHHHhccceEEEecHHHHHHHHcCCC---CCccCCCCceEEEeec
Q 019348 246 HVFGLSVILYDQLQKGNCVVSMGK----FDIEMALRAIEKYRVTVWWVVPPIILALAKNSL---VRKFDISSLKLVGSGA 318 (342)
Q Consensus 246 ~~~g~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~---~~~~~l~~lr~~~~gG 318 (342)
|.+|+...++.++..|+++++.+. .++..+++.+.++++++++.+|..+..+..... ....+++++|.+++||
T Consensus 229 h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~l~~~~~~~~~~~~~~l~~lr~~~~gG 308 (579)
T PRK09192 229 HDMGLVGFLLTPVATQLSVDYLPTRDFARRPLQWLDLISRNRGTISYSPPFGYELCARRVNSKDLAELDLSCWRVAGIGA 308 (579)
T ss_pred CcchhHHHHHHHHHhCCeeEeeCHHHHHHCHHHHHHHHHhcCcEEEeCCcHHHHHHHHhhccccccccchhhhheeEecC
Confidence 999997678888999999987652 368999999999999988877766665553321 2335688999999999
Q ss_pred ccCCHHHHHHHHHhCCC-----CcccccC
Q 019348 319 APLGKELMEDCQKNIPG-----ATIFQKI 342 (342)
Q Consensus 319 ~~l~~~~~~~~~~~~~~-----~~l~~~Y 342 (342)
+++++.+.++|.+.++. ..+++.|
T Consensus 309 ~~l~~~~~~~~~~~~~~~g~~~~~~~~~y 337 (579)
T PRK09192 309 DMIRPDVLHQFAEAFAPAGFDDKAFMPSY 337 (579)
T ss_pred ccCCHHHHHHHHHHHHhcCCChhhccccc
Confidence 99999999999988741 2366665
No 108
>PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional
Probab=100.00 E-value=5e-35 Score=268.33 Aligned_cols=267 Identities=21% Similarity=0.215 Sum_probs=218.8
Q ss_pred HHHHH-hhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeEe
Q 019348 29 MVHFL-FRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIAS 107 (342)
Q Consensus 29 l~~~l-~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v 107 (342)
+.+.. .+.++++|+++|+++. ++.+||+||.++++++|..|++.|+++||+|+++++|+++++++++||+++|++++
T Consensus 4 ~~~~~~~~~a~~~~~~~a~~~~--~~~~ty~el~~~~~~~a~~L~~~g~~~~~~v~l~~~~~~~~~~~~la~~~~G~~~v 81 (458)
T PRK09029 4 FSDWPWRHWAQVRPQAIALRLN--DEVLTWQQLCARIDQLAAGFAQQGVVEGSGVALRGKNSPETLLAYLALLQCGARVL 81 (458)
T ss_pred hhcChHHHHHHhCCCceeeecC--CcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHHHHHHcCCEEe
Confidence 33444 3447889999999976 78999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhccCCCeEEecCCCccccccccccccccccHHHHHhccCCCCCCCCC
Q 019348 108 TANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDV 187 (342)
Q Consensus 108 ~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (342)
|+++..+.+++.++++++++++++++++.... .... ... .. .. ......
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~--~~~---------------------~~-----~~--~~~~~~ 130 (458)
T PRK09029 82 PLNPQLPQPLLEELLPSLTLDFALVLEGENTF-SALT--SLH---------------------LQ-----LV--EGAHAV 130 (458)
T ss_pred ecCCCCCHHHHHHHHHhcCCCEEEEcCcccch-hhcc--ccc---------------------cc-----cc--cccCcc
Confidence 99999999999999999999999987664321 1000 000 00 00 111122
Q ss_pred CCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHHHHHHHHhhcCCeEEEc
Q 019348 188 SVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSM 267 (342)
Q Consensus 188 ~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~ 267 (342)
...++++++++|||||||.||+|.+||++++..+.. ....+....+|+++...|++|.+|+ ..++.++..|+++++.
T Consensus 131 ~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~--~~~~~~~~~~~~~l~~~p~~h~~g~-~~~~~~l~~G~~v~~~ 207 (458)
T PRK09029 131 AWQPQRLATMTLTSGSTGLPKAAVHTAQAHLASAEG--VLSLMPFTAQDSWLLSLPLFHVSGQ-GIVWRWLYAGATLVVR 207 (458)
T ss_pred cCCCCCeEEEEECCCCCCCCCEEEEeHHHHHHHHHH--HhhcCCCCccceEEEecCcHhhhhh-HHHHHHHhCCceEEeC
Confidence 445788999999999999999999999999988655 3444556788999999999999998 6778899999999988
Q ss_pred cCCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCCHHHHHHHHHhCCCCcccccC
Q 019348 268 GKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQKI 342 (342)
Q Consensus 268 ~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~Y 342 (342)
+. ..+++.+ .++|.+..+|+++..++..... ..++|.+++||+++++.+.+.+.+. ++++++.|
T Consensus 208 ~~---~~~~~~i--~~~t~~~~~P~~~~~l~~~~~~----~~~l~~i~~gG~~~~~~~~~~~~~~--g~~~~~~Y 271 (458)
T PRK09029 208 DK---QPLEQAL--AGCTHASLVPTQLWRLLDNRSE----PLSLKAVLLGGAAIPVELTEQAEQQ--GIRCWCGY 271 (458)
T ss_pred Ch---HHHHHHH--hhceeeecChHHHHHHHhcccc----CCcceEEEECCCCCCHHHHHHHHHc--CCcEeccc
Confidence 75 5566776 4799999999999998876532 3479999999999999999999875 48898887
No 109
>PRK07768 long-chain-fatty-acid--CoA ligase; Validated
Probab=100.00 E-value=1.7e-34 Score=270.53 Aligned_cols=291 Identities=20% Similarity=0.237 Sum_probs=229.1
Q ss_pred CHHHHHhhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeEe
Q 019348 28 SMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIAS 107 (342)
Q Consensus 28 ~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v 107 (342)
++.+.+...++.+|+.+++.+.+.++.+||.||+++++++|.+|.+.|+++||+|+++++|+++++++++||+++|++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ty~el~~~v~~~a~~L~~~g~~~gd~V~l~~~~~~~~~~~~la~~~~g~v~~ 82 (545)
T PRK07768 3 RFTEKMYANARTSPRGMVTGEPDAPVRHTWGEVHERARRIAGGLAAAGVGPGDAVAVLAGAPVEIAPTAQGLWMRGASLT 82 (545)
T ss_pred hHHHHHHHHhhCCCcceEEecCCCceEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHHHHHcCcccc
Confidence 57888999999999999998887778999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCHHHH-------HHHhhhcCceEEEEcccchhhhhccCCCeEEecCCCccccccccccccccccHHHHHhccCC
Q 019348 108 TANPVYTVSEL-------SKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGS 180 (342)
Q Consensus 108 ~l~~~~~~~~l-------~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (342)
++++..+.+++ .++++.++++.+++++............ ......++++.....
T Consensus 83 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~------------------~~~~~~~~~l~~~~~- 143 (545)
T PRK07768 83 MLHQPTPRTDLAVWAEDTLRVIGMIGAKAVVVGEPFLAAAPVLEEK------------------GIRVLTVADLLAADP- 143 (545)
T ss_pred ccCCCCCcchhHHHHHHHHHHHHhCCCCEEEecchhhhhhhhhccc------------------CCceeehhhhcccCC-
Confidence 99998876544 4567778999999987654433222110 011123334332211
Q ss_pred CCCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCC-eEEEEccchhHHHHHHHHHHHHhh
Q 019348 181 VTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELD-HVVLCVLPMFHVFGLSVILYDQLQ 259 (342)
Q Consensus 181 ~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~-d~~~~~~p~~~~~g~~~~~~~~l~ 259 (342)
.......++++++|+|||||||.||+|+++|+++...+.. ......+..+ |++++.+|++|..++...++.++.
T Consensus 144 ---~~~~~~~~~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~--~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~ 218 (545)
T PRK07768 144 ---IDPVETGEDDLALMQLTSGSTGSPKAVQITHGNLYANAEA--MFVAAEFDVETDVMVSWLPLFHDMGMVGFLTVPMY 218 (545)
T ss_pred ---CCcCCCCCCCEEEEEeCCCCCCCCceEEEcHHHHHHHHHH--HHHhcCCCCCCceeEEeCCCccchHHHHHHHHHHH
Confidence 1122445789999999999999999999999999887554 3333444554 899999999999999667788999
Q ss_pred cCCeEEEccC----CCHHHHHHHHHhccceEEEecHHHHHHHHcCC----CCCccCCCCceEEEeecccCCHHHHHHHHH
Q 019348 260 KGNCVVSMGK----FDIEMALRAIEKYRVTVWWVVPPIILALAKNS----LVRKFDISSLKLVGSGAAPLGKELMEDCQK 331 (342)
Q Consensus 260 ~G~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~----~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~ 331 (342)
.|+++++.++ .++..+++.+++++++++..+|..+..+.... .....+++++|.+++||+++++...+.+.+
T Consensus 219 ~g~~~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~lr~~~~~g~~~~~~~~~~~~~ 298 (545)
T PRK07768 219 FGAELVKVTPMDFLRDPLLWAELISKYRGTMTAAPNFAYALLARRLRRQAKPGAFDLSSLRFALNGAEPIDPADVEDLLD 298 (545)
T ss_pred CCceEEEeCHHHHHHhHHHHHHHHHHhCCEEEECchHHHHHHHHHHhccccccCCCchheeeEEeccCCCCHHHHHHHHH
Confidence 9999988754 26888999999999999988888777665432 122467889999999999999999999987
Q ss_pred h---CC--CCcccccC
Q 019348 332 N---IP--GATIFQKI 342 (342)
Q Consensus 332 ~---~~--~~~l~~~Y 342 (342)
. ++ ...+++.|
T Consensus 299 ~~~~~g~~~~~~~~~y 314 (545)
T PRK07768 299 AGARFGLRPEAILPAY 314 (545)
T ss_pred HHHhcCCCcccccccc
Confidence 4 44 12477666
No 110
>PRK08308 acyl-CoA synthetase; Validated
Probab=100.00 E-value=2.1e-34 Score=260.79 Aligned_cols=242 Identities=17% Similarity=0.152 Sum_probs=208.9
Q ss_pred EEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeEeccCCCCCHHHHHHHhhhc
Q 019348 46 LIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDS 125 (342)
Q Consensus 46 ~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~ 125 (342)
+++. ++++||+||.++++++|..|. .|+++|++|+++++|+.+++++++|++++|++++|+++..+.+++..+++++
T Consensus 2 ~~~~--~~~~ty~el~~~~~~~a~~l~-~~~~~g~~V~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~~~~~~~~~ 78 (414)
T PRK08308 2 LIVN--DEEYSKSDFDLRLQRYEEMEQ-FQEAAGNRFAVCLKDPFDIITLVFFLKEKGASVLPIHPDTPKEAAIRMAKRA 78 (414)
T ss_pred eEec--CceecHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCChHHHHHHHHHHHCCeEEEecCCCCCHHHHHHHHHhC
Confidence 4555 679999999999999999985 6899999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEcccchhhhhccCCCeEEecCCCccccccccccccccccHHHHHhccCCCCCCCCCCCCCCCeEEEEcCCCCCC
Q 019348 126 NPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTG 205 (342)
Q Consensus 126 ~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG 205 (342)
+++++++++.... .. . .....++++++++|||||||
T Consensus 79 ~~~~~i~~~~~~~-----------~~------------------------------~---~~~~~~~~~~~i~~TSGtTG 114 (414)
T PRK08308 79 GCHGLLYGESDFT-----------KL------------------------------E---AVNYLAEEPSLLQYSSGTTG 114 (414)
T ss_pred CCCEEEecCcccc-----------cc------------------------------c---CCCCCCCCceEEEECCCCCC
Confidence 9999998752100 00 0 01234578999999999999
Q ss_pred CchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHHHHHHHHhhcCCeEEEccCCCHHHHHHHHHhccce
Q 019348 206 VSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVT 285 (342)
Q Consensus 206 ~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t 285 (342)
.||+|.+||+++...+.. ....+....+|+.+...|++|.+|++..++.++..|+++++.+.+++..+++.++++++|
T Consensus 115 ~PKgv~~s~~~l~~~~~~--~~~~~~~~~~~~~~~~~p~~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~~t 192 (414)
T PRK08308 115 EPKLIRRSWTEIDREIEA--YNEALNCEQDETPIVACPVTHSYGLICGVLAALTRGSKPVIITNKNPKFALNILRNTPQH 192 (414)
T ss_pred CCcEEEEehHhHHHHHHH--HHHhhCCCcccEEEEecCcHHHHHHHHHHHHHHHcCCEEEecCCCCHHHHHHHHHHhCCe
Confidence 999999999999887554 334455567899999999999999877899999999999999989999999999999999
Q ss_pred EEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCCHHHHHHHHHhCCCCcccccC
Q 019348 286 VWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQKI 342 (342)
Q Consensus 286 ~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~Y 342 (342)
.++++|.++..+.+.... ..+++.+++||+++++.+.+++++. +.++++.|
T Consensus 193 ~~~~~P~~~~~l~~~~~~----~~~l~~~~~~G~~l~~~~~~~~~~~--~~~~~~~Y 243 (414)
T PRK08308 193 ILYAVPLMLHILGRLLPG----TFQFHAVMTSGTPLPEAWFYKLRER--TTYMMQQY 243 (414)
T ss_pred EEEcCHHHHHHHHhcCCc----cccccEEEEccCCCCHHHHHHHHHh--CChhhhcc
Confidence 999999999999876522 1368899999999999999999987 36788877
No 111
>TIGR01733 AA-adenyl-dom amino acid adenylation domain. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group.
Probab=100.00 E-value=2.2e-34 Score=260.42 Aligned_cols=263 Identities=22% Similarity=0.320 Sum_probs=219.1
Q ss_pred eHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCCChHHHHHHHHHHhCCeEeccCCCCCHHHHHHHhhhcCceEEEEcc
Q 019348 56 SFSQFKSIVIKVSHSFRH-LGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVP 134 (342)
Q Consensus 56 Ty~~l~~~~~~la~~L~~-~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~ 134 (342)
||.||.+.+.++++.|.+ .|+++||+|+++++|+.+++++++||+.+|++++|+++..+.+++.++++.++++++++++
T Consensus 1 t~~~l~~~~~~~a~~l~~~~g~~~gd~v~l~~~n~~~~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~ii~~~ 80 (408)
T TIGR01733 1 TYRELDERANRLARHLRAAGGVGPGDRVAVLLERSAELVVAILAVLKAGAAYVPLDPAYPAERLAFILEDAGARLLLTDS 80 (408)
T ss_pred CHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEEcCCCCCHHHHHHHHHhcCCCEEEEcC
Confidence 799999999999999988 8999999999999999999999999999999999999999999999999999999999998
Q ss_pred cchhhhhccCCCeEEecCCCccccccccccccccccHHHHHhccCCCCCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhH
Q 019348 135 ELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTH 214 (342)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~ 214 (342)
+....+.......+..... +........ ...........+++++++|||||||.||+|.+||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~-~~~~~~~~~~~~~~~~i~~TSGTtG~pK~v~~s~ 142 (408)
T TIGR01733 81 ALASRLAGLVLPIILVDPL-----------------ELAALDDAP-APPPPDAPSGPDDLAYVIYTSGSTGRPKGVVVTH 142 (408)
T ss_pred chhhhccccCCceEEechh-----------------hhhhccccc-ccccccCCCCCCCcEEEEEcCCCCCCCCEEEecc
Confidence 8776665443222222211 000000000 0111111145689999999999999999999999
Q ss_pred HHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHHHHHHHHhhcCCeEEEccCCC---HHHHHHHHHhccceEEEecH
Q 019348 215 KNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFD---IEMALRAIEKYRVTVWWVVP 291 (342)
Q Consensus 215 ~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~---~~~~~~~i~~~~~t~~~~~P 291 (342)
+++...+... ...+....+|++++..|++|.+++ ..++.++..|+++++.+... +..+.+.++++++|.+.++|
T Consensus 143 ~~~~~~~~~~--~~~~~~~~~~~~~~~~p~~~~~~~-~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~~p 219 (408)
T TIGR01733 143 RSLVNLLAWL--ARRYGLDPDDRVLQFASLSFDASV-EEIFGTLLAGATLVVPPEDEERDAALLAALIAEHPVTVLNLTP 219 (408)
T ss_pred HHHHHHHHHH--HHhcCCCCCceEEEecCCccchhH-HHHHHHHhCCCEEEEcChhhccCHHHHHHHHHHcCceEEEeCH
Confidence 9999886553 345556788999999999999998 78999999999999987643 68999999999999999999
Q ss_pred HHHHHHHcCCCCCccCCCCceEEEeecccCCHHHHHHHHHhCCCCcccccC
Q 019348 292 PIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQKI 342 (342)
Q Consensus 292 ~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~Y 342 (342)
.+++.+.+... ..+++||.+++||+++++++.++|++.++++.+++.|
T Consensus 220 ~~~~~l~~~~~---~~~~~l~~v~~~g~~~~~~~~~~~~~~~~~~~i~~~Y 267 (408)
T TIGR01733 220 SLLALLAAALP---PALASLRLVILGGEALTPALVDRWRARGPGARLINLY 267 (408)
T ss_pred HHHHHHHHhhh---hcccCceEEEEeCccCCHHHHHHHHHhCCCcEEEecc
Confidence 99999998764 5688999999999999999999999999878898887
No 112
>PRK08276 long-chain-fatty-acid--CoA ligase; Validated
Probab=100.00 E-value=5.5e-34 Score=264.51 Aligned_cols=281 Identities=28% Similarity=0.355 Sum_probs=221.5
Q ss_pred EEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeEeccCCCCCHHHHHHHhhh
Q 019348 45 ALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKD 124 (342)
Q Consensus 45 a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~ 124 (342)
|++....++.+||.||.+.+.++++.|++.|+++||+|+++++|+.+++++++||+++|++++|+++..+.+++.++++.
T Consensus 2 ~~~~~~~~~~~ty~el~~~v~~~a~~L~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~~~l~~~~~~~~~~~~~~~ 81 (502)
T PRK08276 2 AVIMAPSGEVVTYGELEARSNRLAHGLRALGLREGDVVAILLENNPEFFEVYWAARRSGLYYTPINWHLTAAEIAYIVDD 81 (502)
T ss_pred ceEecCCCcEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHhcCcEEEecccccCHHHHHHHHhc
Confidence 34433448999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCceEEEEcccchhhhhcc------CCCeEEecCCCccccccccccccccccHHHHHhccCCCCCCCCCCCCCCCeEEEE
Q 019348 125 SNPKLVITVPELWDKVKDL------NLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALL 198 (342)
Q Consensus 125 ~~~~~vi~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 198 (342)
++++++++++.......+. ....+.+... .......|.+...... .......++.++++
T Consensus 82 ~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~-----~~~~~~~~~~a~i~ 146 (502)
T PRK08276 82 SGAKVLIVSAALADTAAELAAELPAGVPLLLVVAG----------PVPGFRSYEEALAAQP-----DTPIADETAGADML 146 (502)
T ss_pred CCCCEEEEccchhhHHHHHhhhccccccEEEEeCC----------CCCccccHHHHHhcCC-----CCCCCCCCcceEEE
Confidence 9999999998776654432 1222222211 1122234444433221 11123456789999
Q ss_pred cCCCCCCCchhhhHhHHHHHHHhh---h-hhhhhccccCCCeEEEEccchhHHHHHHHHHHHHhhcCCeEEEccCCCHHH
Q 019348 199 YSSGTTGVSKGVILTHKNFIAASL---M-ISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEM 274 (342)
Q Consensus 199 ~TSGtTG~pK~v~~t~~~l~~~~~---~-~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~ 274 (342)
|||||||.||+|.++|.++..... . ...........++++++..|++|.+++ ...+.++..|+++++.+.+++..
T Consensus 147 ~TSGtTG~PK~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~ 225 (502)
T PRK08276 147 YSSGTTGRPKGIKRPLPGLDPDEAPGMMLALLGFGMYGGPDSVYLSPAPLYHTAPL-RFGMSALALGGTVVVMEKFDAEE 225 (502)
T ss_pred ECCCCCCCCceEEEccCCcchhhhhHHhhhhhhhcccCCCCCEEEEcCcHHHHHHH-HHHHHHHhccceEEEcCCCCHHH
Confidence 999999999999988776553211 0 001111212467899999999999998 66668999999999999899999
Q ss_pred HHHHHHhccceEEEecHHHHHHHHcCCCC--CccCCCCceEEEeecccCCHHHHHHHHHhCCCCcccccC
Q 019348 275 ALRAIEKYRVTVWWVVPPIILALAKNSLV--RKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQKI 342 (342)
Q Consensus 275 ~~~~i~~~~~t~~~~~P~~l~~l~~~~~~--~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~Y 342 (342)
+++.++++++|++.++|+++..+++.... ...+++++|.+++||++++.++.+++++.++ ..+++.|
T Consensus 226 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~g~~~~~~~~~~~~~~~~-~~~~~~y 294 (502)
T PRK08276 226 ALALIERYRVTHSQLVPTMFVRMLKLPEEVRARYDVSSLRVAIHAAAPCPVEVKRAMIDWWG-PIIHEYY 294 (502)
T ss_pred HHHHHHHhCCeEEEehHHHHHHHHhCccccCCCCCcccceEEEecCCCCCHHHHHHHHHHhC-cHhhhhc
Confidence 99999999999999999999999887542 3456889999999999999999999999887 7788776
No 113
>PRK12406 long-chain-fatty-acid--CoA ligase; Provisional
Probab=100.00 E-value=8.4e-34 Score=263.70 Aligned_cols=289 Identities=20% Similarity=0.261 Sum_probs=222.5
Q ss_pred EEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeEeccCCCCCHHHHHHHhhh
Q 019348 45 ALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKD 124 (342)
Q Consensus 45 a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~ 124 (342)
|+++. ++.+||.||.++++++|++|.+.|+++||+|+++++|+.+++++++||+++|+++++++|..+.+++.++++.
T Consensus 4 ~~~~~--~~~~Ty~el~~~~~~la~~l~~~g~~~g~~V~v~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~ 81 (509)
T PRK12406 4 TIISG--DRRRSFDELAQRAARAAGGLAALGVRPGDCVALLMRNDFAFFEAAYAAMRLGAYAVPVNWHFKPEEIAYILED 81 (509)
T ss_pred EEEEC--CeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCeEEEecCcccCHHHHHHHHhc
Confidence 56665 7899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCceEEEEcccchhhhhccC---CCeEEecCCCccc-----cccccccccccccHHHHHhccCCCCCCCCCCCCCCCeEE
Q 019348 125 SNPKLVITVPELWDKVKDLN---LPAVLLGSKDKVS-----SSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAA 196 (342)
Q Consensus 125 ~~~~~vi~~~~~~~~~~~~~---~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (342)
+++++++++......+.+.. ...+......... .............++++..... .......+++++
T Consensus 82 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~a~ 156 (509)
T PRK12406 82 SGARVLIAHADLLHGLASALPAGVTVLSVPTPPEIAAAYRISPALLTPPAGAIDWEGWLAQQE-----PYDGPPVPQPQS 156 (509)
T ss_pred cCCcEEEEccchhhhhhhhhhcccceeecccccccccccccccccccCCCCccCHHHHhcccC-----ccCCCCCCCceE
Confidence 99999999877665443221 1111111110000 0000011223344555543221 112234679999
Q ss_pred EEcCCCCCCCchhhhHhHHHHHHHhhh-hhhhhccccCCCeEEEEccchhHHHHHHHHHHHHhhcCCeEEEccCCCHHHH
Q 019348 197 LLYSSGTTGVSKGVILTHKNFIAASLM-ISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMA 275 (342)
Q Consensus 197 i~~TSGtTG~pK~v~~t~~~l~~~~~~-~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~ 275 (342)
++|||||||.||+|.++|......... ......+....++++++..|++|..+. ...+.++..|+++++.+.+++..+
T Consensus 157 i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~ 235 (509)
T PRK12406 157 MIYTSGTTGHPKGVRRAAPTPEQAAAAEQMRALIYGLKPGIRALLTGPLYHSAPN-AYGLRAGRLGGVLVLQPRFDPEEL 235 (509)
T ss_pred EEECCCCCCCCceEEEechhHHHHHHHHHhhhhhcCCCCCceEEEEeCCcccchH-HHHHHHHhhheEEEEccCCCHHHH
Confidence 999999999999998765543322111 112334556788999999999999887 555667899999999988999999
Q ss_pred HHHHHhccceEEEecHHHHHHHHcCCC--CCccCCCCceEEEeecccCCHHHHHHHHHhCCCCcccccC
Q 019348 276 LRAIEKYRVTVWWVVPPIILALAKNSL--VRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQKI 342 (342)
Q Consensus 276 ~~~i~~~~~t~~~~~P~~l~~l~~~~~--~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~Y 342 (342)
++.++++++|.+.++|.+++.|+.... ....+++++|.+++||+++++++.+++.+.++ +.+++.|
T Consensus 236 ~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~l~~v~~gg~~~~~~~~~~~~~~~~-~~~~~~Y 303 (509)
T PRK12406 236 LQLIERHRITHMHMVPTMFIRLLKLPEEVRAKYDVSSLRHVIHAAAPCPADVKRAMIEWWG-PVIYEYY 303 (509)
T ss_pred HHHHHHcCCeEEEccHHHHHHHHhCchhhcccCCCCceeEEEEcCCCCCHHHHHHHHHHcC-CcEEeec
Confidence 999999999999999999999987643 23456889999999999999999999999887 8888877
No 114
>KOG1180 consensus Acyl-CoA synthetase [Lipid transport and metabolism]
Probab=100.00 E-value=1.2e-34 Score=250.74 Aligned_cols=313 Identities=20% Similarity=0.272 Sum_probs=246.6
Q ss_pred CCCHHHHHhhhcccCCCceEEEeCC----------CC-----------cceeHHHHHHHHHHHHHHHHHcCCCCCCE-EE
Q 019348 26 SFSMVHFLFRNSASYSSKLALIDAD----------SD-----------ESLSFSQFKSIVIKVSHSFRHLGITKKDV-VL 83 (342)
Q Consensus 26 ~~~l~~~l~~~~~~~p~~~a~~~~~----------~~-----------~~~Ty~~l~~~~~~la~~L~~~g~~~g~~-V~ 83 (342)
-.|+.+++.+.++++.++.++-.++ ++ .++||.|+.+++.++++.|.+.|+++++. ++
T Consensus 40 ~~Tl~~~~~~~~~k~g~~~~mGtR~li~~h~ek~~dGK~f~k~~Lg~Y~w~sy~ev~~~~~~~gsGL~~lG~k~~e~k~~ 119 (678)
T KOG1180|consen 40 ASTLYELFEECVKKFGKKDAMGTRELIKEHEEKQVDGKTFEKYELGDYKWMSYNEVYERVHNFGSGLVKLGLKPKETKIA 119 (678)
T ss_pred cccHHHHHHHHHHhcCCCccccHHHHHHHHhhccCCCeEEEEEeccceeeecHHHHHHHHHHHHHHHHHhCCCCCCCeEE
Confidence 3799999999999999998875221 11 68999999999999999999999997666 99
Q ss_pred EECCCCChHHHHHHHHHHhCCeEeccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhccC-----CC-eEEecCCCccc
Q 019348 84 IFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN-----LP-AVLLGSKDKVS 157 (342)
Q Consensus 84 i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-----~~-~~~~~~~~~~~ 157 (342)
|+++.+.+|+.+++||++-+...|.+...+.++.+.+-|++++...+|++.+.++.+.... .+ .|..+..+...
T Consensus 120 iFa~TraeWm~ta~gC~~q~ipvVT~Y~TLGeeal~hsl~Et~~~~i~T~~~LL~kl~~~l~~~~~vk~II~~d~id~~~ 199 (678)
T KOG1180|consen 120 IFAETRAEWMITAQGCFSQNIPVVTAYATLGEEALIHSLNETESTAIFTDSELLPKLKAPLKQAKTVKHIIYFDPIDYDA 199 (678)
T ss_pred EEecchHHHHHHHHHHHhcCCeEEEEehhcChhhhhhhhccccceEEEeCHHHHHHHHHHHhccCceeEEEEecCCCCcc
Confidence 9999999999999999999999999999999999999999999999999999888654431 22 33333211111
Q ss_pred ccc----ccccccccccHHHHHhccCCCCCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccC
Q 019348 158 SSG----LISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGE 233 (342)
Q Consensus 158 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~ 233 (342)
... .......+.+|+++++.+.... .++....++|+|+|+|||||||.||||+++|+|+++.+......- ..+.
T Consensus 200 ~~~~v~~i~~p~i~i~Sf~~v~~lG~~~~-~~~~~P~p~Dia~IMYTSGSTG~PKGVml~H~NiVA~~~G~~~~v-~~lg 277 (678)
T KOG1180|consen 200 AKDDVNSIVRPDIKIISFDDVEKLGKENE-IPPHPPKPSDIACIMYTSGSTGLPKGVMLTHSNIVAGVTGVGENV-PELG 277 (678)
T ss_pred chhhhhhhccCCeEEEEHHHHHhhCCcCC-CCCCCCCCCceEEEEEcCCCCCCCceEEEecccHHhhhhhhcccC-cccC
Confidence 111 1234566788999998887532 344455889999999999999999999999999999866532222 2567
Q ss_pred CCeEEEEccchhHHHHHHHHHHHHhhcCCeEEEccCCCHHH--------HHHHHHhccceEEEecHHHHHHHHcCCC---
Q 019348 234 LDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEM--------ALRAIEKYRVTVWWVVPPIILALAKNSL--- 302 (342)
Q Consensus 234 ~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~--------~~~~i~~~~~t~~~~~P~~l~~l~~~~~--- 302 (342)
..|+++.++|+.|++.+ ..=+.++..|+.+...+.....+ .--.+...|+|++.++|.+|+++.+--.
T Consensus 278 ~~D~yi~yLPLAHIlEl-~aE~~~ft~G~~iGY~S~~TLtdts~ki~kg~kGD~~~lkPTiM~~VpAV~drVrKgVl~kV 356 (678)
T KOG1180|consen 278 PKDRYIAYLPLAHILEL-TAELVCFTWGGRIGYSSPLTLTDTSSKIKKGCKGDLTELKPTIMAAVPAVMDRVRKGVLSKV 356 (678)
T ss_pred CCceEEEechHHHHHHH-HHHHHHHhhCCEeecCCcceecccchhhccCCcCccccccchhhhhhHHHHHHHHHHHHHHH
Confidence 99999999999999999 77788999999999886532222 2223457799999999999966544210
Q ss_pred ----------------------C-C----------------ccCCCCceEEEeecccCCHHHHHHHHHhCCCCcccccC
Q 019348 303 ----------------------V-R----------------KFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQKI 342 (342)
Q Consensus 303 ----------------------~-~----------------~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~Y 342 (342)
. . ...-.+||.+++||+|++++..+.+-..+. +++.++|
T Consensus 357 ~~~~~~~k~lF~~aY~~K~~~~~~~g~~s~~ld~lVFkKIr~~lGG~lR~~LsGGapLS~dtQrF~nic~C-~Pv~qGY 434 (678)
T KOG1180|consen 357 NAMPGLQKKLFWTAYERKLSLIERNGPGSPLLDALVFKKIRALLGGNLRYILSGGAPLSPDTQRFMNICFC-CPVLQGY 434 (678)
T ss_pred hhchHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHHhCCceEEEEeCCCCCCHHHHHHHHHhcc-ccccccc
Confidence 0 0 001248999999999999999999999887 8999998
No 115
>PTZ00297 pantothenate kinase; Provisional
Probab=100.00 E-value=1.3e-33 Score=279.78 Aligned_cols=268 Identities=13% Similarity=0.108 Sum_probs=208.7
Q ss_pred CCHHHHHhhhcccCCCceEEEeC---CCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhC
Q 019348 27 FSMVHFLFRNSASYSSKLALIDA---DSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIG 103 (342)
Q Consensus 27 ~~l~~~l~~~~~~~p~~~a~~~~---~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G 103 (342)
.|+.++|.+.++++|+++|+... +..+++||+|+.++++++|..|.+.|+++||+|+|+++|+++|+++++||+.+|
T Consensus 427 ~Tl~dll~~~a~~~pd~~al~~~~~~g~~~~lTY~El~~~V~~lAa~L~~lGV~~GDrVaIls~N~~Ewvia~lA~~~~G 506 (1452)
T PTZ00297 427 RSLGEMWERSVTRHSTFRCLGQTSESGESEWLTYGTVDARARELGSGLLALGVRPGDVIGVDCEASRNIVILEVACALYG 506 (1452)
T ss_pred CCHHHHHHHHHHHCCCCeEEEEeccCCCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcC
Confidence 69999999999999999999742 223689999999999999999999999999999999999999999999999999
Q ss_pred CeEeccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhccC---CCeEEecCCC-ccccccc-cccccccccHHHHHhcc
Q 019348 104 AIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN---LPAVLLGSKD-KVSSSGL-ISRSSKIVSFHDLIELS 178 (342)
Q Consensus 104 ~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~---~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~ 178 (342)
++.+|+++ +.+++.+++++++++++|++.+....+.+.. .+.+++.... ....... ........+|+++++.+
T Consensus 507 aV~VPly~--t~~eL~yIL~~S~akvVfv~~~~l~kl~~i~~~~Lr~IIv~d~~~~~~~~~~~~~~~i~~~s~~~ll~~G 584 (1452)
T PTZ00297 507 FTTLPLVG--KGSTMRTLIDEHKIKVVFADRNSVAAILTCRSRKLETVVYTHSFYDEDDHAVARDLNITLIPYEFVEQKG 584 (1452)
T ss_pred CEEEeCCC--CHHHHHHHHHhcCCcEEEEchhHHHHHHhhcccCCcEEEEECCCcccccccccccCCcceeeHHHHHhcC
Confidence 99999975 4678999999999999999987776654432 3333332210 0000000 00112356688888765
Q ss_pred CCCCCCCCCCCCCCCeEEEEc---CCCCCCCchhhhHhHHHHHHHhhhhhhhhc-cccCCCeEEEEccchhHHHHHHHHH
Q 019348 179 GSVTDIPDVSVKQTDAAALLY---SSGTTGVSKGVILTHKNFIAASLMISAHQE-LVGELDHVVLCVLPMFHVFGLSVIL 254 (342)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~i~~---TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~-~~~~~~d~~~~~~p~~~~~g~~~~~ 254 (342)
............+++++.|+| ||||||.||||++||+|++..+..+..... ....++|++++++|++|+++. ...
T Consensus 585 ~~~~~~~~~~~~~dDlatIiYtSyTSGTTG~PKGVmLTH~Nlla~~~~~~~~~~~~~~~~~D~~Ls~LPLaHI~er-~~~ 663 (1452)
T PTZ00297 585 RLCPVPLKEHVTTDTVFTYVVDNTTSASGDGLAVVRVTHADVLRDISTLVMTGVLPSSFKKHLMVHFTPFAMLFNR-VFV 663 (1452)
T ss_pred cccCccccCCCCcccEEEEEecCCCCCCCcCCcEEEEeHHHHHHHHHHHhhhccccCCCCCCEEEEechHHHHHHH-HHH
Confidence 421111123346788999985 999999999999999999998765432211 124578999999999999997 677
Q ss_pred HHHhhcCCeEEEccCCCHHHHHHHHHhccceEEEecHHHHHHHHcC
Q 019348 255 YDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKN 300 (342)
Q Consensus 255 ~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~ 300 (342)
+.++..|+++.+ +++..+++.|+++++|+++++|.+|+.+.+.
T Consensus 664 ~~~l~~G~~I~~---~d~~~lledL~~~rPTv~~~VPrv~ekI~~~ 706 (1452)
T PTZ00297 664 LGLFAHGSAVAT---VDAAHLQRAFVKFQPTILVAAPSLFSTSRLQ 706 (1452)
T ss_pred HHHHHcCCEEEe---CCHHHHHHHHHHHCCEEEEecHHHHHHHHHH
Confidence 888999999874 4689999999999999999999999877553
No 116
>PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed
Probab=100.00 E-value=6.5e-34 Score=259.58 Aligned_cols=242 Identities=15% Similarity=0.196 Sum_probs=195.4
Q ss_pred ceeHHHHHHHHHHHHHHHHHcCC-CCCCEEEEECCCCChHHHHHHHHHHhCCeEeccCCCCCHHHHHHHhhhcCceEEEE
Q 019348 54 SLSFSQFKSIVIKVSHSFRHLGI-TKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVIT 132 (342)
Q Consensus 54 ~~Ty~~l~~~~~~la~~L~~~g~-~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~ 132 (342)
-+.|+||.+++.++|+.|++.|+ ++|++|+++++|+++++++++||+++|++++|++|.++.+++.+++++++++++++
T Consensus 19 ~~~~~el~~~~~~~a~~L~~~g~~~~~~~V~i~~~n~~e~~~~~~A~~~~G~~~vpl~~~~~~~~~~~~~~~~~~~~~i~ 98 (452)
T PRK07445 19 GYNSQRFYQLAQQLYLQLQQLATPRTPPKILLAESDPLQFLAAFLAAVAAGCPVFLANPHWGQQEWQQVLNLVQPDQIWG 98 (452)
T ss_pred ecChHHHHHHHHHHHHHHHHhcCCCCCCeEEEecCCCHHHHHHHHHHHHhCcEEEeeccCCCHHHHHHHHHhcCCCEEEe
Confidence 46799999999999999999988 57999999999999999999999999999999999999999999999999999998
Q ss_pred cccchhhhhccCCCeEEecCCCccccccccccccccccHHHHHhccCCCCCCCCCCCCCCCeEEEEcCCCCCCCchhhhH
Q 019348 133 VPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVIL 212 (342)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~ 212 (342)
+.+..... .. . .. . ......+++.++++|||||||.||+|++
T Consensus 99 ~~~~~~~~---------~~-~------------------------~~--~--~~~~~~~~~~~~i~~TSGTTG~PKgV~~ 140 (452)
T PRK07445 99 LDQLKLSH---------PP-P------------------------LP--S--QGILPNLETGWIMIPTGGSSGQIRFAIH 140 (452)
T ss_pred cCcccccc---------CC-C------------------------CC--c--cccCCCCCCcEEEEeCCCCCCCCcEEEe
Confidence 76532110 00 0 00 0 0012345799999999999999999999
Q ss_pred hHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHHHHHHHHhhcCCeEEEccCCCHHHHHHHHHhccceEEEecHH
Q 019348 213 THKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPP 292 (342)
Q Consensus 213 t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~ 292 (342)
||+++...+... ...+... .++.++.+|++|.+|+ ..++.++..|+++++.+..+.........++++|++.++|+
T Consensus 141 t~~~l~~~~~~~--~~~~~~~-~~~~~~~~Pl~h~~g~-~~~~~~l~~G~t~v~~~~~~~~~~~~~~~~~~~t~~~~vP~ 216 (452)
T PRK07445 141 TWETLTASVQGF--QRYFQLQ-QVNSFCVLPLYHVSGL-MQFMRSFLTGGKLVILPYKRLKSGQELPPNPSDFFLSLVPT 216 (452)
T ss_pred chHHHHHHHHHH--HHHhcCC-CCceEeccCchhhhhH-HHHHHHHHcCCeEEEcChHhccchhhhhhhcCceEEEehHH
Confidence 999998775442 2233333 3467889999999998 77889999999999987433333334446789999999999
Q ss_pred HHHHHHcCCCCCccCCCCceEEEeecccCCHHHHHHHHHhCCCCcccccC
Q 019348 293 IILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQKI 342 (342)
Q Consensus 293 ~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~Y 342 (342)
+++.+.+.. ...+++||.+++||+++++++.+++++. ++++++.|
T Consensus 217 ~l~~l~~~~---~~~l~~l~~i~~gG~~l~~~~~~~~~~~--~~~l~~~Y 261 (452)
T PRK07445 217 QLQRLLQLR---PQWLAQFRTILLGGAPAWPSLLEQARQL--QLRLAPTY 261 (452)
T ss_pred HHHHHHhhC---hhhhhcceEEEECCccCCHHHHHHHHhc--CCeEecCc
Confidence 999998632 3457899999999999999999998764 48898887
No 117
>TIGR01923 menE O-succinylbenzoate-CoA ligase. This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate.
Probab=100.00 E-value=3.2e-33 Score=254.92 Aligned_cols=250 Identities=24% Similarity=0.320 Sum_probs=207.5
Q ss_pred eHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeEeccCCCCCHHHHHHHhhhcCceEEEEccc
Q 019348 56 SFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPE 135 (342)
Q Consensus 56 Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~ 135 (342)
||+||.++++++|+.|.+.|+++||+|+++++|+.+++++++||+++|++++++++.++.+++..+++.++++++++++.
T Consensus 1 Ty~~l~~~~~~~a~~l~~~g~~~gd~v~i~~~~~~~~~~~~la~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 80 (436)
T TIGR01923 1 TWQDLDCEAAHLAKALKAQGIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTENERTNQLEDLDVQLLLTDSL 80 (436)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHhcCcEEEecCcCCCHHHHHHHHHhcCCCEEEEcCc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred chhhhhccCCCeEEecCCCccccccccccccccccHHHHHhccCCCCCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHH
Q 019348 136 LWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHK 215 (342)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~ 215 (342)
..... +... .+......... ..........+++++++|||||||.||+|.++|+
T Consensus 81 ~~~~~-------~~~~------------------~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~s~~ 134 (436)
T TIGR01923 81 LEEKD-------FQAD------------------SLDRIEAAGRY-ETSLSASFNMDQIATLMFTSGTTGKPKAVPHTFR 134 (436)
T ss_pred ccccc-------eeec------------------chHhhhhcccc-cccccccCCcCceEEEEeCCCCCCCCcEEEEehH
Confidence 32110 0000 01111110000 1111223456789999999999999999999999
Q ss_pred HHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHHHHHHHHhhcCCeEEEccCCCHHHHHHHHHhccceEEEecHHHHH
Q 019348 216 NFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIIL 295 (342)
Q Consensus 216 ~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~ 295 (342)
++...+.. ....+....+|++++..|++|..++ ..++.++..|+++++.+.+ ..+++.++++++|++.++|.++.
T Consensus 135 ~~~~~~~~--~~~~~~~~~~d~~~~~~~~~~~~~~-~~~~~~l~~g~~~~~~~~~--~~~~~~l~~~~~t~~~~~P~~l~ 209 (436)
T TIGR01923 135 NHYASAVG--SKENLGFTEDDNWLLSLPLYHISGL-SILFRWLIEGATLRIVDKF--NQLLEMIANERVTHISLVPTQLN 209 (436)
T ss_pred HHHHHHHH--HHhhcCCCCCceEEEccCcHhHHHH-HHHHHHHhcCceEEecchH--HHHHHHHHHhCCeEEEeHHHHHH
Confidence 99887554 4445567788999999999999998 7789999999999999765 49999999999999999999999
Q ss_pred HHHcCCCCCccCCCCceEEEeecccCCHHHHHHHHHhCCCCcccccC
Q 019348 296 ALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQKI 342 (342)
Q Consensus 296 ~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~Y 342 (342)
.+.+..... +++|.+++||+++++++.+.+++. ++++++.|
T Consensus 210 ~l~~~~~~~----~~l~~~~~~G~~~~~~~~~~~~~~--~~~~~~~Y 250 (436)
T TIGR01923 210 RLLDEGGHN----ENLRKILLGGSAIPAPLIEEAQQY--GLPIYLSY 250 (436)
T ss_pred HHHhCcCCC----CceEEEEECCCCCCHHHHHHHHHh--CCceeeEe
Confidence 999875322 689999999999999999998875 58898887
No 118
>KOG1175 consensus Acyl-CoA synthetase [Lipid transport and metabolism]
Probab=100.00 E-value=9.8e-32 Score=242.74 Aligned_cols=300 Identities=26% Similarity=0.376 Sum_probs=234.6
Q ss_pred CCCceEEEeCC----CCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeEeccCCCCCH
Q 019348 40 YSSKLALIDAD----SDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTV 115 (342)
Q Consensus 40 ~p~~~a~~~~~----~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~ 115 (342)
.+++++++... +...+||.|+.+++.++|..|++.|+++||+|++.+|+.++++++++||.+.|++.+++-...++
T Consensus 78 ~~~~~a~~~~~~~~~~~~~~t~~el~~~v~~~a~~l~~~g~~kGD~V~~~mPm~~e~~ia~lA~~r~Gai~~~v~~~fs~ 157 (626)
T KOG1175|consen 78 GGDKVAIIFEGNEGGDTEVWTYKELLDQVVRLANVLRKCGLKKGDTVAIYMPMIPEAVIAMLACARIGAIHSSVFAGFSA 157 (626)
T ss_pred CCCCcEEEEEecCCCceEEEEHHHHHHHHHHHHHHHHhcCCCCCcEEEEeccCChHHHHHHHHHhhcCeEEEEeeccCCH
Confidence 47888887552 22458999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCceEEEEcccchhhhhccCCCeEEecCCCccc-------cccccccccccccHHHHHhccCCCCCCCCCC
Q 019348 116 SELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVS-------SSGLISRSSKIVSFHDLIELSGSVTDIPDVS 188 (342)
Q Consensus 116 ~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (342)
.++...++.++++++++.+......+.+....+......... .............|+.++.... .......
T Consensus 158 ~~l~~Rl~~~~~k~i~t~d~~~~~~k~i~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~a~--~~~~~~~ 235 (626)
T KOG1175|consen 158 KELLDRLQDSKAKVIITQDVVARGGKSINLKCIVLEALLLVSDKSRPVWLDLIVSRRNRDLFWSLELKKAS--PEHPCVP 235 (626)
T ss_pred HHHHHHHHhcCCCEEEEEeeeccCCCccchhhhHHHHhhcccccccccceeeEEecccccccHHHHhhhcC--CCCCcee
Confidence 999999999999999998766554444321111111000000 0000011122445666655555 4444667
Q ss_pred CCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHHHHHHHHhhcCCeEEEcc
Q 019348 189 VKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMG 268 (342)
Q Consensus 189 ~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~ 268 (342)
...+|+.+|+|||||||.||++.+++...+-.+ .......+...+.|++.+...+.++.+.....+.+|+.|+++++.+
T Consensus 236 ~~~edpl~IlfTSGtTg~PK~v~ht~~g~ll~~-~~~~~~~~d~q~~dv~~~~~d~GWi~g~~~~~~gpl~~Ga~~vl~~ 314 (626)
T KOG1175|consen 236 VKAEDPLFILFTSGTTGKPKGVIHTTGGYLLGA-ALTSRYHFDLQPSDVLWCASDLGWITGHSYVLYGPLLNGATVVLYE 314 (626)
T ss_pred cCccCceEEEecCCCCCCCCceeeccCcchHHH-hhhcceeccCCCcceEEEecccCeeeccchhhhhhhhcCcEEEEEc
Confidence 788999999999999999999988877655432 2224555567899999999999999999777889999999999984
Q ss_pred --CCCHHHHHHHHHhccceEEEecHHHHHHHHcCCC--CCccCCCCceEEEeecccCCHHHHHHHHHhCCCCcccccC
Q 019348 269 --KFDIEMALRAIEKYRVTVWWVVPPIILALAKNSL--VRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQKI 342 (342)
Q Consensus 269 --~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~--~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~Y 342 (342)
++++..+++.+.++++|++++.|+.++.|.+... ...+++++||.+.++||++.++..+.+.+.++..+|++.|
T Consensus 315 g~p~~~~~~~~~v~k~~it~l~t~pt~~r~l~~~~~~~~~~~~~~sLk~~~S~Gepi~~~~~ew~~~~~~~~pv~e~~ 392 (626)
T KOG1175|consen 315 GPPFDPGRIWKILDKYKVTVLYTAPTAYRLLRRLGQEDVTSYSLKSLRTCGSVGEPINPEAWEWWKRVTGLDPIYETY 392 (626)
T ss_pred CCCCChhhhhhhHhhcceEEEEeccHHHHHHHHhccccccccccceEEEEeecCccCCcchHHHHHHhcCccchhhce
Confidence 4699999999999999999999999997766554 3345567899999999999999999999999833566654
No 119
>PLN03051 acyl-activating enzyme; Provisional
Probab=99.98 E-value=8.2e-31 Score=242.71 Aligned_cols=251 Identities=17% Similarity=0.192 Sum_probs=185.2
Q ss_pred CCCCChHHHHHHHHHHhCCeEeccCCCCCHHHHHHHhhhcCceEEEEcccch------hhhhcc----CCCeEEecCCCc
Q 019348 86 APNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELW------DKVKDL----NLPAVLLGSKDK 155 (342)
Q Consensus 86 ~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~----~~~~~~~~~~~~ 155 (342)
++|+++++++++||+++|++++|+++.++.+++.++++.++++++|+++... ..+... ....+.+.....
T Consensus 1 ~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~el~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 80 (499)
T PLN03051 1 MPMTVDAVIIYLAIVLAGCVVVSVADSFSAKEIATRLDISGAKGVFTQDVVLRGGRALPLYSKVVEAAPAKAIVLPAAGE 80 (499)
T ss_pred CCCcHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCceEEEecCceeeCCeeecchhhhhhcccceEEEEeccCc
Confidence 5899999999999999999999999999999999999999999999986431 111111 111222211100
Q ss_pred cccccccccccccccHHHHHhccCCC-----CCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhcc
Q 019348 156 VSSSGLISRSSKIVSFHDLIELSGSV-----TDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQEL 230 (342)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~ 230 (342)
... .........|.++....... .........++++++|+|||||||.||||++||++++..+.. ....+
T Consensus 81 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~~~~~~~~--~~~~~ 155 (499)
T PLN03051 81 PVA---VPLREQDLSWCDFLGVAAAQGSVGGNEYSPVYAPVESVTNILFSSGTTGEPKAIPWTHLSPLRCASD--GWAHM 155 (499)
T ss_pred ccC---CccccCcccHHHHHhhhccccccccccCCcccCCccceEEEEeCCCCCCCCceEEEccchHHHHHHH--HHHhc
Confidence 000 00001223455554221100 011111235689999999999999999999999998765332 23344
Q ss_pred ccCCCeEEEEccchhHHHHHHHHHHHHhhcCCeEEEccC-CCHHHHHHHHHhccceEEEecHHHHHHHHcCCC--CCccC
Q 019348 231 VGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGK-FDIEMALRAIEKYRVTVWWVVPPIILALAKNSL--VRKFD 307 (342)
Q Consensus 231 ~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~-~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~--~~~~~ 307 (342)
....+|++++..|++|.+++ ..++.++..|+++++.+. +++..+++.|+++++|++.++|+++..|++... ....+
T Consensus 156 ~~~~~d~~l~~~pl~h~~g~-~~~~~~l~~G~t~v~~~~~~~~~~~~~~i~~~~vt~~~~vP~~~~~l~~~~~~~~~~~~ 234 (499)
T PLN03051 156 DIQPGDVVCWPTNLGWMMGP-WLLYSAFLNGATLALYGGAPLGRGFGKFVQDAGVTVLGLVPSIVKAWRHTGAFAMEGLD 234 (499)
T ss_pred CCCCCCEEEEccCcceeeeh-HHHHHHHHcCCEEEecCCCCCcHHHHHHHHHhCCcEEEeCHHHHHHHHhcCccccccCC
Confidence 56788999999999999998 678899999999999874 788999999999999999999999999987653 33457
Q ss_pred CCCceEEEeecccCCHHHHHHHHHhCC-CCcccccC
Q 019348 308 ISSLKLVGSGAAPLGKELMEDCQKNIP-GATIFQKI 342 (342)
Q Consensus 308 l~~lr~~~~gG~~l~~~~~~~~~~~~~-~~~l~~~Y 342 (342)
+++||.+++||++++++..+++++.++ ++++++.|
T Consensus 235 ~~~Lr~i~~gG~~~~~~~~~~~~~~~~~~~~~~~~Y 270 (499)
T PLN03051 235 WSKLRVFASTGEASAVDDVLWLSSVRGYYKPVIEYC 270 (499)
T ss_pred chhheEEEecCCCCCHHHHHHHHHhccccceeEeee
Confidence 889999999999999999988777332 26788877
No 120
>TIGR03089 conserved hypothetical protein TIGR03089. This protein family is found, so far, only in the Actinobacteria (Streptomyces, Mycobacterium, Corynebacterium, Nocardia, Propionibacterium, etc.) and never more than one to a genome. Members show twilight-level sequence similarity to family of AMP-binding enzymes described by Pfam model pfam00501.
Probab=99.97 E-value=5.9e-30 Score=210.63 Aligned_cols=220 Identities=18% Similarity=0.125 Sum_probs=165.6
Q ss_pred HhhhcccCCCceEEEeC-C---CCcceeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCCChHHHHHHHHHHhCCeEe
Q 019348 33 LFRNSASYSSKLALIDA-D---SDESLSFSQFKSIVIKVSHSFRH-LGITKKDVVLIFAPNSIHFPICFLGVIAIGAIAS 107 (342)
Q Consensus 33 l~~~~~~~p~~~a~~~~-~---~~~~~Ty~~l~~~~~~la~~L~~-~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v 107 (342)
+...++++|+++|++.. + +++++||+|+.++++++|+.|++ .|+++||+|+|+++|+++++++++||+++|++++
T Consensus 2 ~~~~~~~~p~~~al~~~~~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~Gv~~GdrV~i~~~n~~~~~~~~~a~~~~G~v~v 81 (227)
T TIGR03089 2 LSPLLAADPASPRLTFYDDATGERVELSAATLANWVAKTANLLQDELDAEPGSRVALDLPAHWQTAVWLLAAWSTGVEVV 81 (227)
T ss_pred hhhhhhhCCCCcEEEEEcCCCCeeEEEEHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEE
Confidence 35567789999999743 2 23479999999999999999998 7999999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhccCCCeEEecCCCccccccccccccccccHHHHHhccCCCCCCCCC
Q 019348 108 TANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDV 187 (342)
Q Consensus 108 ~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (342)
|++ .+++++++++++........ ...+.+.......... .....++..|.+...... ......
T Consensus 82 p~n-------------~s~a~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~ 144 (227)
T TIGR03089 82 LAG-------------DPDADVVVTGPDRLAAAAGS-GEVVALSLDPLGRRVA-GELPPGVIDFAPEVRVHG--DQFAPY 144 (227)
T ss_pred eCC-------------CCCCCEEEeCcchhhhcccC-CceEEEeccccccCCC-CCCCCcccchhhhhhccC--CCCCCC
Confidence 995 67899999998877764422 2222221100000000 011223345666554322 111112
Q ss_pred -CCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHHHHHHHHhhcCCeEEE
Q 019348 188 -SVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVS 266 (342)
Q Consensus 188 -~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~ 266 (342)
...++|++.|+||||+ +|.+++... ...+++++|+++ .+|++|.+|+...++.+|..|+++++
T Consensus 145 ~~~~~~D~a~l~yTsg~---------~~~~~~~~~------~~~~l~~~D~~l-~~Pl~H~~gl~~~~~~~l~~G~t~v~ 208 (227)
T TIGR03089 145 EPPDATAPALVAGGGEW---------TGAELVAAA------RAAGLPPGDRVL-VLAWTDLEDFLATLLAPLAAGGSLVL 208 (227)
T ss_pred CCCCCCcceeeeccccc---------cHHHHHHHH------hhcCCCCCCeEE-ecCCCchHHHHHHHHHHhccCceEEE
Confidence 3456899999999985 666665552 344567899999 99999999997789999999999999
Q ss_pred ccCCCHHHHHHHHHhccce
Q 019348 267 MGKFDIEMALRAIEKYRVT 285 (342)
Q Consensus 267 ~~~~~~~~~~~~i~~~~~t 285 (342)
.++|++..+++.|+++|||
T Consensus 209 ~~rFd~~~~l~~i~~~~vT 227 (227)
T TIGR03089 209 VTHPDPARLDQIAETERVT 227 (227)
T ss_pred ecCCCHHHHHHHHHhhcCC
Confidence 9999999999999999987
No 121
>COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.96 E-value=4.5e-27 Score=224.50 Aligned_cols=287 Identities=21% Similarity=0.292 Sum_probs=232.8
Q ss_pred CCHHHHHhhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeE
Q 019348 27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA 106 (342)
Q Consensus 27 ~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~ 106 (342)
.++.+.|.+.+...|++.|+.+. +..+||+++..+++++|+.|.+.|+++++.|+++.+.+.++++.++|++++|+.+
T Consensus 227 ~~i~~~f~~~a~~~p~~~a~~~~--~~~lty~el~~~a~~la~~l~~~g~~~~~~V~i~~~rs~~~i~~~l~ilkaG~~y 304 (642)
T COG1020 227 LTIHLLFEEQAATTPDAVALVRG--GQQLTYAELDARANRLARLLISLGVGPGETVAILADRSLELVVALLAVLKAGAAY 304 (642)
T ss_pred chHHHHHHHHHHhCCCceeEecC--CCcccHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCCHHHHHHHHHHHhcCCeE
Confidence 68999999999999999999987 8899999999999999999999999999999999988999999999999999999
Q ss_pred eccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhccCCCeEEecCCCccccccccccccccccHHHHHhccCCCCCCCC
Q 019348 107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPD 186 (342)
Q Consensus 107 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (342)
+|++|..+.+++..+++..++..+++............. +..+.. ...... .....
T Consensus 305 vP~d~~~P~~r~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--------------------~~~~~~--~~~~~ 360 (642)
T COG1020 305 VPLDPLYPAERLAYILEDSRPTLLLTQAHLRVDDVGLPG--LALDDA--------------------LSEIPD--TDPIP 360 (642)
T ss_pred ecCCCCChHHHHHHHHhhcCccEEEeccccccccccCCc--cccccc--------------------cccCCc--cCccc
Confidence 999999999999999999999999998333221111111 111110 000000 11112
Q ss_pred CCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHHHHHHHHhhcCCeEEE
Q 019348 187 VSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVS 266 (342)
Q Consensus 187 ~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~ 266 (342)
....+++.++++|||||||.||||..+|+++.+.... ....+....+|+++...++.+.... ..++.++..|+++++
T Consensus 361 ~~~~~~~~ayiiytsgstg~Pkgv~~~h~~~~~~~~~--~~~~~~~~~~d~~l~~~s~~fD~~~-~~~f~~l~~G~~l~~ 437 (642)
T COG1020 361 QALLGDALAYIIYTSGSTGQPKGVRIEHRALANLLND--AGARFGLDADDRVLALASLSFDASV-FEIFGALLEGARLVL 437 (642)
T ss_pred ccCCCCCeEEEEEccCCCCCCCCceecCHHHHHHHHH--HHHhcCCCcccEEeecCCcccchhH-HHHHHHHhCCCEEEe
Confidence 2345589999999999999999999999999985333 4444667788999999999888777 889999999999999
Q ss_pred ccC---CCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCc--cCCCCceEEEeecccCCHHHHHHHHHhCC-CCcccc
Q 019348 267 MGK---FDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRK--FDISSLKLVGSGAAPLGKELMEDCQKNIP-GATIFQ 340 (342)
Q Consensus 267 ~~~---~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~--~~l~~lr~~~~gG~~l~~~~~~~~~~~~~-~~~l~~ 340 (342)
.+. .++..+.+.+.++++|++..+|.++..+........ .....+|.+++||+.++..+.+++....+ ...+.+
T Consensus 438 ~~~~~~~~~~~l~~~~~~~~vt~~~~~p~~~~~~~~~~~~~~~~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~~l~~ 517 (642)
T COG1020 438 APALLQVDPAALLELLEAQGITVLLLVPLLLRLLLLAALAPDLISPCERLRQLLSGGEALPLALVQRLLQLAALARRLLN 517 (642)
T ss_pred cCccccCCHHHHHHHHHHcCCEEEEecHHHHHHHHhchhhccccCCcccccEEEEcCCCCCHHHHHHHHHhccccceEee
Confidence 864 589999999999999999999999999988732222 22345999999999999999999988764 356666
Q ss_pred cC
Q 019348 341 KI 342 (342)
Q Consensus 341 ~Y 342 (342)
.|
T Consensus 518 ~y 519 (642)
T COG1020 518 LY 519 (642)
T ss_pred cc
Confidence 65
No 122
>KOG3628 consensus Predicted AMP-binding protein [General function prediction only]
Probab=99.82 E-value=8.8e-19 Score=162.98 Aligned_cols=294 Identities=15% Similarity=0.193 Sum_probs=218.5
Q ss_pred CCHHHHHhhhcccCCCceEEEeCC----CCcceeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEECCCCChHHHHHHHHHH
Q 019348 27 FSMVHFLFRNSASYSSKLALIDAD----SDESLSFSQFKSIVIKVSHSFRHL-GITKKDVVLIFAPNSIHFPICFLGVIA 101 (342)
Q Consensus 27 ~~l~~~l~~~~~~~p~~~a~~~~~----~~~~~Ty~~l~~~~~~la~~L~~~-g~~~g~~V~i~~~n~~~~~~~~lA~~~ 101 (342)
.+|.++++.+++++||.+|+...+ .+.++||++|..++.+++.+|... .+++||.|+++++++.|++++++||+.
T Consensus 770 ~~ile~Lq~R~a~tp~~~a~~~~n~~~~~~~~~Tw~~f~krva~i~~~l~~k~~lk~Gd~V~Lmy~~sie~vaa~~~Cly 849 (1363)
T KOG3628|consen 770 LTILEILQWRAAKTPDHIAFTTLNARGATKKTLTWAQFHKRVARIAEYLQDKGHLKAGDHVVLMYPPSIEFVAAIYACLY 849 (1363)
T ss_pred HHHHHHHHHHhhcCCCceEEEEeccCCcccceeEHHHHHHHHHHHHHHHHhcccCCCCCeEEEEcCChHHHHHHHHHHHh
Confidence 589999999999999999998543 348999999999999999999644 779999999999999999999999999
Q ss_pred hCCeEeccCCCCCH------HHHHHHhhhcCceEEEEcccchhhhhccCC---------CeEEecCCCcccccccccccc
Q 019348 102 IGAIASTANPVYTV------SELSKQVKDSNPKLVITVPELWDKVKDLNL---------PAVLLGSKDKVSSSGLISRSS 166 (342)
Q Consensus 102 ~G~~~v~l~~~~~~------~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~ 166 (342)
+|.+++|+.|.... ..+..+++.+++.+|+++.+....++.... +.+....+ ...
T Consensus 850 ~GliPIpv~p~~~s~l~~~l~~~~~ii~~~kv~ailv~~~v~~lLrsr~~s~~~~~s~~p~i~~~~~----------~~~ 919 (1363)
T KOG3628|consen 850 LGLIPIPVPPPHASNLIEDLPTFRMIIKVYKVAAILVDQKVLKLLRSREASAHVDQSAIPLILVLPK----------LPE 919 (1363)
T ss_pred cCeeeeccCCccHHhhhhhhHHHHHHHHHhhhheEEecHHHHHHHhhhhHHHHhhhhcchhhhcccc----------cch
Confidence 99999999987533 567789999999999999877665543321 11111100 000
Q ss_pred ccccHHHHHhccCCCCCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhH
Q 019348 167 KIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFH 246 (342)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~ 246 (342)
.+..-..-+.... ...++...+.+.+|++-+.--++|.--++..+|..+++.+.. ......+.+...++...+.+.
T Consensus 920 t~~k~~~~~~k~~--~~~~~g~~~k~~~a~v~~~~~~dg~l~~~~msHsslla~Ck~--iKe~~~l~~~rpl~~~~~~~s 995 (1363)
T KOG3628|consen 920 TIRKRKKNIKKLN--TPTPPGLNNKETPALVWFNVSTDGMLIGVKMSHSSLLAFCKI--IKETCQLYKSRPLLGCSSPYS 995 (1363)
T ss_pred hhhhhhhhhhccC--CCCCccccCCCceEEEEEEecCCcceeeeeccHHHHHHHHHH--HHHHHccccCCceEEEecCcc
Confidence 1111111111111 222334456678999999999999999999999999999877 444444566666777777777
Q ss_pred HHHHHHHHHHHhhcCCeEEEccC----CCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCc------eEEEe
Q 019348 247 VFGLSVILYDQLQKGNCVVSMGK----FDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSL------KLVGS 316 (342)
Q Consensus 247 ~~g~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~l------r~~~~ 316 (342)
..|+..+++...++|.+.++.++ -+|..++..|.++++.-++.+-..++...+....+..+++.. -.++.
T Consensus 996 Glgf~~wcLlgVysGh~T~Li~p~~l~nnpsLll~~i~~~kvkDt~~~~~tln~c~~~l~t~~enl~~~gnn~s~s~vv~ 1075 (1363)
T KOG3628|consen 996 GLGFNHWCLLGVYSGHPTLLISPMDLENNPSLLLQIISQYKVKDTYPTYSTLNLCQKGLETSVENLSKRGNNTSSSIVVP 1075 (1363)
T ss_pred chhHHHHHHHHHHcCCceeecCHHHhhcCHHHHHHHHhcccccccchhHHHHHHHHhccccccchhhhhhcccccceeee
Confidence 78887899999999998777654 379999999999999999999999988877665444433221 33444
Q ss_pred ecccCCHHHHHHHHHhCC
Q 019348 317 GAAPLGKELMEDCQKNIP 334 (342)
Q Consensus 317 gG~~l~~~~~~~~~~~~~ 334 (342)
.-+.....+.+-|.++|.
T Consensus 1076 ~~~RPr~ali~sf~klfa 1093 (1363)
T KOG3628|consen 1076 AEERPRIALIASFKKLFA 1093 (1363)
T ss_pred cCCccHHHHHHHHHHHHH
Confidence 455666677777777763
No 123
>TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family. Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names.
Probab=99.82 E-value=1.6e-19 Score=160.35 Aligned_cols=141 Identities=16% Similarity=0.119 Sum_probs=116.2
Q ss_pred CCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhcccc--CCCeEEEEccchhHHHHHHHHHHHHhhcCCeEEEccC
Q 019348 192 TDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVG--ELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGK 269 (342)
Q Consensus 192 ~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~--~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~ 269 (342)
+..++++|||||||.||+|++||+++.+.+... ...+.. ...|++++.+|++|.+|+...++.++..|+++++.++
T Consensus 95 ~~~~~i~~TSGTTG~PKgV~~sh~~l~~~~~~~--~~~~~~~~~~~dr~l~~~Pl~h~~g~~~~~l~~l~~G~~vv~~~~ 172 (386)
T TIGR02372 95 PTARFTFATSGSTGTPKPVTHSWAALLSEAQAI--AKILGERPPPVRRVISCVPAHHLYGFLFSCLLPSRRGLEAKQLAA 172 (386)
T ss_pred CCceEEEECCCCCCCCceeEeeHHHHHHHHHHH--HHHhCcCCCCCCeEEEeCCcHHHHHHHHHHHHHHHCCCeEEecCC
Confidence 568899999999999999999999998875543 233333 3346899999999999986778889999999999988
Q ss_pred CCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCCHHHHHHHHHhCCCCcccccC
Q 019348 270 FDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQKI 342 (342)
Q Consensus 270 ~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~Y 342 (342)
+++..+++.++.+ |++.++|.+++.+.+.. .++++++. ++||+++++++.+++++. +...++++|
T Consensus 173 ~~~~~~l~~i~~~--t~~~~~P~~l~~l~~~~----~~l~slr~-i~gGa~l~~~l~~~~~~~-g~~~v~~~Y 237 (386)
T TIGR02372 173 APASGIMRHARPG--DLIVGTPFIWEQLADLD----YRLPGVVG-VSSGAPSTAATWRCLLAA-GLARLLEVY 237 (386)
T ss_pred CChHHHHHhhccC--CEEEECcHHHHHHHhhC----cCCCccee-EecCCCCCHHHHHHHHHh-cccchhhee
Confidence 9999988888754 89999999999998753 35677886 678999999999999886 424688887
No 124
>PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional
Probab=99.78 E-value=6.8e-18 Score=150.01 Aligned_cols=147 Identities=23% Similarity=0.296 Sum_probs=121.1
Q ss_pred CCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHHHHHHHHhhcCCeEEE-
Q 019348 188 SVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVS- 266 (342)
Q Consensus 188 ~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~- 266 (342)
...++++++++|||||||.||+|+++|+++....... ...+ ...++++...|++|.+++ ..++.++..|+++++
T Consensus 31 ~~~~~d~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~--~~~~--~~~~~~~~~~p~~~~~g~-~~~~~~l~~g~~~v~~ 105 (358)
T PRK07824 31 EPIDDDVALVVATSGTTGTPKGAMLTAAALTASADAT--HDRL--GGPGQWLLALPAHHIAGL-QVLVRSVIAGSEPVEL 105 (358)
T ss_pred CCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHH--Hhcc--CCCCeEEEECChHHHHHH-HHHHHHHHcCCeEEec
Confidence 4456899999999999999999999999998875432 2222 355788999999999998 678889999999887
Q ss_pred --ccCCCHHHHHHHHHhcc--ceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCCHHHHHHHHHhCCCCcccccC
Q 019348 267 --MGKFDIEMALRAIEKYR--VTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQKI 342 (342)
Q Consensus 267 --~~~~~~~~~~~~i~~~~--~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~Y 342 (342)
...+++..+++.+++++ .++...+|..+..++..... ..+++++|.+++||+++++.+.+++.+. ++++++.|
T Consensus 106 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~l~~~~~~~~~-~~~~~~l~~i~~gG~~l~~~~~~~~~~~--~~~v~~~Y 182 (358)
T PRK07824 106 DVSAGFDPTALPRAVAELGGGRRYTSLVPMQLAKALDDPAA-TAALAELDAVLVGGGPAPAPVLDAAAAA--GINVVRTY 182 (358)
T ss_pred CcCCCcCHHHHHHHHHHhCCCceEEEecHHHHHHHHhCccc-cCCcccceEEEECCCCCCHHHHHHHHhc--CCcEEecc
Confidence 34578999999999998 56677789888877765532 3468899999999999999999999875 48999887
No 125
>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase. Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions.
Probab=99.72 E-value=7.1e-17 Score=146.50 Aligned_cols=152 Identities=18% Similarity=0.161 Sum_probs=119.9
Q ss_pred CCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhh-hhhccccCCCeEEEEccchhHHHHHHHHHHHHhhcCCeEEEcc
Q 019348 190 KQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMIS-AHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMG 268 (342)
Q Consensus 190 ~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~-~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~ 268 (342)
..++++.+++||||||.||++.++|.++........ .....+...+|++++..+..+..+.....+.++..|++++..+
T Consensus 73 ~~~~~~~~~~TSGTTG~Pk~v~~t~~~~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 152 (422)
T TIGR02155 73 PREQVVRIHASSGTTGKPTVVGYTQNDIDTWSSVVARSIRAAGGRPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVVPIS 152 (422)
T ss_pred ChHHcEEEEECCCCCCCCeEeccCHHHHHHHHHHHHHHHHHcCCCCCcEEEEccCccccchhHHHHHHHHHcCcEEEecC
Confidence 456788999999999999999999999876533321 2223455678888876665443333245667888999998887
Q ss_pred CCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccC--CCCceEEEeecccCCHHHHHHHHHhCCCCcccccC
Q 019348 269 KFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFD--ISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQKI 342 (342)
Q Consensus 269 ~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~--l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~Y 342 (342)
..++..+++.|+++++|+++++|+++..|++.....+.+ ..++|.+++||+++++...+.+++.|+ +++++.|
T Consensus 153 ~~~~~~~~~~i~~~~~t~l~~~Ps~l~~L~~~~~~~~~~~~~~~lr~i~~~ge~l~~~~~~~i~~~~g-~~v~~~Y 227 (422)
T TIGR02155 153 GGQTEKQVQLIQDFKPDIIMVTPSYMLNLLEELKRMGIDPAQTSLQVGIFGAEPWTNAMRKEIEARLG-MKATDIY 227 (422)
T ss_pred CCCHHHHHHHHHHHCCCEEEEcHHHHHHHHHHHHHcCCCcccCceEEEEEeCCcCCHHHHHHHHHHhC-CceEecc
Confidence 778899999999999999999999999888754333222 358999999999999999999999997 8999887
No 126
>TIGR03335 F390_ftsA coenzyme F390 synthetase. This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen.
Probab=99.62 E-value=3.4e-15 Score=135.90 Aligned_cols=150 Identities=17% Similarity=0.159 Sum_probs=116.5
Q ss_pred CCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhh-hccccCCCeEEEEccchhHHHHHHHHHHHHhhcCCeEEEcc
Q 019348 190 KQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAH-QELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMG 268 (342)
Q Consensus 190 ~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~-~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~ 268 (342)
..++++.+.+||||||.||+|.+||.++...+...... ...++..+|+++...+..+..+.....+.++..|++++...
T Consensus 84 ~~~~i~~i~~TSGTTG~Pk~v~~T~~dl~~~~~~~~r~~~~~G~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi~~~ 163 (445)
T TIGR03335 84 DWKDIYTIHETSGTSGTPKSFFLTWDDWKRYAEKYARSFVSQGFTAGDRMVICASYGMNVGANTMTLAAREVGMSIIPEG 163 (445)
T ss_pred CHHHeEEEEeCCCCCCCcceeeecHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCCcchhHHHHHHHHHHcCCEEEcCC
Confidence 45688999999999999999999999987664332211 12346778999998888776665345567788898876444
Q ss_pred CCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCcc--CCCCceEEEeecccCCHHHHHHHHHhCCCCcccccC
Q 019348 269 KFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKF--DISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQKI 342 (342)
Q Consensus 269 ~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~--~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~Y 342 (342)
. ....++.|+++++|.+.++|+.+..|++....... ...++|.+++||+++++...+.+++.|| +++++.|
T Consensus 164 ~--~~~~~~~i~~~~~t~l~~~ps~ll~La~~~~~~g~~~~~~~lr~ii~gGE~l~~~~r~~ie~~~g-~~v~~~Y 236 (445)
T TIGR03335 164 K--CTFPIRIIESYRPTGIVASVFKLLRLARRMKAEGIDPAESSIRRLVVGGESFADESRNYVEELWG-CEVYNTY 236 (445)
T ss_pred c--hhHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCcceEEEEcCCCCCHHHHHHHHHHhC-CcEEecC
Confidence 3 35678999999999999999988877764432222 2468999999999999999999999997 9999988
No 127
>KOG1178 consensus Non-ribosomal peptide synthetase/alpha-aminoadipate reductase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.62 E-value=3.8e-15 Score=142.44 Aligned_cols=293 Identities=18% Similarity=0.139 Sum_probs=190.0
Q ss_pred CHHHHHhhhcccCCCceEEEeCC------CCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHH
Q 019348 28 SMVHFLFRNSASYSSKLALIDAD------SDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIA 101 (342)
Q Consensus 28 ~l~~~l~~~~~~~p~~~a~~~~~------~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~ 101 (342)
++...+.+.+.+.|...+..+.. .-..+||++....++.+++.|...|...|+.|++++..+.++++..++.++
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~i~~~t~r~~~~~~n~~~q~l~~~~~~~~~~v~i~~~~~~d~~v~v~~~~~ 116 (1032)
T KOG1178|consen 37 TLEDSFRRELAEAPENTGHVIIPTASESGIIDSFTYRLIRLLSNIIAQFLVSLGSLRGTTVAIYMLPSVDLVVSVFAVLA 116 (1032)
T ss_pred chhhHHHHHHhhcccCCCceEeecccccccccchhhhhhhcccchhHHHhhhcccccCceEEEeccCcCCeeeeeeehhh
Confidence 45557888888888877765331 127899999999999999999999999999999999999999999999999
Q ss_pred hCCeEeccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhccCCCeEEecCCCccccccccccccccccHHHHHhccCCC
Q 019348 102 IGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSV 181 (342)
Q Consensus 102 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (342)
.|..+++++|.++..++...+.+......-...+...+.........-..... .-......|..+....
T Consensus 117 ~g~~~~~idp~~~~~e~~~~~~~ia~~~~s~~~~i~~~l~i~~~~~~~~~~~~--------sv~~~~~~f~~~~~~~--- 185 (1032)
T KOG1178|consen 117 AGLTFLPIDPSWPNSELAGYLMRIAHFLTSVELEIVRRLNIIDILLNSLFPKL--------SVETIADSFQMVLHNE--- 185 (1032)
T ss_pred cceEEEEecCCCcccccchHHHhhhhhheeccceehhhhhhHHHHhhcccccc--------chhhccchhhhhhccC---
Confidence 99999999999992222222222221111111111111111110000000000 0000011122121111
Q ss_pred CCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccch-hHHHHHHHHHHHHhhc
Q 019348 182 TDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPM-FHVFGLSVILYDQLQK 260 (342)
Q Consensus 182 ~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~-~~~~g~~~~~~~~l~~ 260 (342)
.........+++.+++.||||+||.||+|.-+|..+.+..+. ....+..+..++.-..... ++..-. ..+...|..
T Consensus 186 ~~r~~~~~~~ds~~~l~~tSgs~G~pk~v~~~~~sl~~~fdw--~~~~f~~t~s~~~~~~~~~~~~d~i~-~~~~~~L~~ 262 (1032)
T KOG1178|consen 186 DTREIRVGGNDSTALLSFTSGSTGVPKGVAGTHFSLANAFDW--MFTTFPPTGSDRFTFKTSVYFDDTIQ-KFIGALLFN 262 (1032)
T ss_pred CCcceeeecccccceEeecccccccccccchhHHHHHhhhhh--ccccCCcCccchhhhhheeecccchH-HHHhhHhhc
Confidence 222333456678999999999999999999999999988333 3334444555554222222 233222 445566666
Q ss_pred CCeEEEccCC---CHHHHHHHHHhccceEEEecHHHHHHHHcCCCCC-------------ccCCCCceEEEeecccCCHH
Q 019348 261 GNCVVSMGKF---DIEMALRAIEKYRVTVWWVVPPIILALAKNSLVR-------------KFDISSLKLVGSGAAPLGKE 324 (342)
Q Consensus 261 G~~~v~~~~~---~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~-------------~~~l~~lr~~~~gG~~l~~~ 324 (342)
|+.+..+... .+..+.+.+++++++..+.+|++++.++...... ....+.|+....+|++...+
T Consensus 263 ~~~l~~p~~~~~~~~~~l~~~le~y~i~~~~~~~a~~~~l~~~~~~~~~~l~~~~~~~dl~~~~~~Lkl~~~~~ep~~v~ 342 (1032)
T KOG1178|consen 263 GNNLLVPTATIKDTPGQLASTLERYGITVSHLLPAMCQLLLAILTTSLPLLEHAFSLSDLLTKRSCLKLVVLGGEPLLVS 342 (1032)
T ss_pred CceeecccccCccchhhHHHHHHhhhheeeeechhhhhhhhhhcCcchhhhhhhhhcccccccchhheeeeecCCccchh
Confidence 7666666432 3799999999999999999999988887765431 11234799999999999999
Q ss_pred HHHHHHHhCC
Q 019348 325 LMEDCQKNIP 334 (342)
Q Consensus 325 ~~~~~~~~~~ 334 (342)
+...+...+.
T Consensus 343 l~~s~~~~~~ 352 (1032)
T KOG1178|consen 343 LYTSTFDLLA 352 (1032)
T ss_pred hhhhhhhccc
Confidence 9886666553
No 128
>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism]
Probab=99.25 E-value=7.8e-11 Score=103.29 Aligned_cols=153 Identities=21% Similarity=0.173 Sum_probs=115.5
Q ss_pred CCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhcc-ccCCCeEEEEccch-hHHHHHHHHHHHHhhcCCeEE
Q 019348 188 SVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQEL-VGELDHVVLCVLPM-FHVFGLSVILYDQLQKGNCVV 265 (342)
Q Consensus 188 ~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~-~~~~~d~~~~~~p~-~~~~g~~~~~~~~l~~G~~~v 265 (342)
....++...|--||||||+|+-+.+|...+...+..+...... +...+|++....-. .+..|+ ..-+++-..|++++
T Consensus 86 ~~~~~~i~~ihaSSGTTGkPt~~~~t~~D~~~wa~~~aR~~~~~g~~~gd~v~~~~~yGl~tgg~-~~~~ga~rig~~vi 164 (438)
T COG1541 86 AVPKEEIVRIHASSGTTGKPTVFGYTAKDIERWAELLARSLYSAGVRKGDKVQNAYGYGLFTGGL-GLHYGAERIGATVI 164 (438)
T ss_pred cccccceEEEEccCCCCCCceeeecCHHHHHHHHHHHHHHHHHccCCCCCEEEEEeeeccccCCc-hhHHHHHhhCEEEE
Confidence 3445677779999999999999999999887765554433333 24466766554442 112222 33455555777666
Q ss_pred EccCCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCc--cCCCCceEEEeecccCCHHHHHHHHHhCCCCcccccC
Q 019348 266 SMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRK--FDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQKI 342 (342)
Q Consensus 266 ~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~--~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~Y 342 (342)
=.+.-+.+..+++|+.+++|++.++|+.+..|++.....+ ..-.+||.+++|+|++++...+.+.++|+ +..++.|
T Consensus 165 p~~~g~~~~~~~l~~df~~tvI~~tps~~l~lae~~~~~G~~~~~~~lk~~i~gaE~~see~R~~ie~~~g-~~~~diY 242 (438)
T COG1541 165 PISGGNTERQLELMKDFKPTVIAATPSYLLYLAEEAEEEGIDPDKLSLKKGIFGAEPWSEEMRKVIENRFG-CKAFDIY 242 (438)
T ss_pred ccCCccHHHHHHHHHhcCCcEEEEChHHHHHHHHHHHHcCCChhhcceeEEEEecccCCHHHHHHHHHHhC-Cceeecc
Confidence 5555578999999999999999999999999998876663 33457999999999999999999999998 8888887
No 129
>KOG3628 consensus Predicted AMP-binding protein [General function prediction only]
Probab=99.07 E-value=6.5e-10 Score=105.00 Aligned_cols=285 Identities=19% Similarity=0.213 Sum_probs=197.9
Q ss_pred CHHHHHhhhcccCCCceEEEeCCCC---cceeHHHHHHHHHHHHH-HHHHcCCCCCCEEEEECCCC--ChHHHHHHHHHH
Q 019348 28 SMVHFLFRNSASYSSKLALIDADSD---ESLSFSQFKSIVIKVSH-SFRHLGITKKDVVLIFAPNS--IHFPICFLGVIA 101 (342)
Q Consensus 28 ~l~~~l~~~~~~~p~~~a~~~~~~~---~~~Ty~~l~~~~~~la~-~L~~~g~~~g~~V~i~~~n~--~~~~~~~lA~~~ 101 (342)
.+...++..-..++.+.|.++-+.. ..+||..+..++.++|+ .|.+-|+.++|+|.++...+ .++++..++|..
T Consensus 95 d~~avl~~~~nhs~~~ta~i~id~kgk~~~~twdkl~~rA~k~a~~~l~ksgl~~~~~vvL~Y~~~e~ie~~isl~gc~l 174 (1363)
T KOG3628|consen 95 DIIAVLRYRRNHSATSTAHICIDKKGKATSITWDKLLNRAEKVAHVELNKSGLKPGDRVVLYYRKCEAIEFLISLFGCFL 174 (1363)
T ss_pred chHHHHHhhccCCCCCceEEEEcCCCceeeeeHHHHHHHHHhhccHHhhccCCCCCcEEEEEEEhhhhhHHhhhhccccc
Confidence 4556666666667778887765432 78999999999999999 67777999999999998766 799999999999
Q ss_pred hCCeEeccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhccCCCeEEecCCCccccccccccccccccHHHHHhccCCC
Q 019348 102 IGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSV 181 (342)
Q Consensus 102 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (342)
.|.+.+|+.+..+.+++..+++.....++++.......+.....+ . .......|....++......
T Consensus 175 ~g~~~vp~~e~~s~~el~~i~~~~~~~~~l~t~a~~r~~~~~~~~------~-------s~~k~v~~w~t~~~k~~~~~- 240 (1363)
T KOG3628|consen 175 LGIVAVPLSELSSSEELKDIVNPTPERVALTTEAGERAFINDNSP------V-------SLAKAVAWWKTNDFKGNYTK- 240 (1363)
T ss_pred cceeeccchhhhhhhhhhcccCCCccceEeehhhhHHHhhhccCc------c-------cHHHHHHhhhcccccceeeh-
Confidence 999999999999999999999999988888875544433221100 0 00000011111111100000
Q ss_pred CCCCCCCCCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhh----------h--------hccccCCCeEEEEccc
Q 019348 182 TDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISA----------H--------QELVGELDHVVLCVLP 243 (342)
Q Consensus 182 ~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~----------~--------~~~~~~~~d~~~~~~p 243 (342)
.....+..+.. .++|-||++++|.--|++.+|+ ++.+.+.+.. . ..+....++..+....
T Consensus 241 ~k~~~P~~~~~-~~~i~~t~s~l~~~~g~V~~~~-~~~q~r~~~~~~nt~Pa~~~~~~~~~~~~~v~~~~~~~~~l~~~~ 318 (1363)
T KOG3628|consen 241 DKIKKPRMQLP-YGYIEFTRSPLGNLIGVVYKHK-FLPQMRVLTSIPNTNPARFAAAFYGCLHAHVFPVPSEDVLLTNLD 318 (1363)
T ss_pred hhccCCceeee-eEEEEEeccchhceeeeEeecc-cccchhhhhhccCcChHHHHHhhhcchhhhccccCcccceeeccC
Confidence 11122333344 8999999999999999999988 5444322110 0 1111224566777777
Q ss_pred hhHHHHHHHHHHHHhhcCCeEEEccC---CCHHHHHHHHHhccceEEEecHHHHHHHHcCCC-----------CCccCCC
Q 019348 244 MFHVFGLSVILYDQLQKGNCVVSMGK---FDIEMALRAIEKYRVTVWWVVPPIILALAKNSL-----------VRKFDIS 309 (342)
Q Consensus 244 ~~~~~g~~~~~~~~l~~G~~~v~~~~---~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~-----------~~~~~l~ 309 (342)
..-..|++++++.++++|.|.+.+++ +.|..+.+++.++|.+++..--..+........ ....+++
T Consensus 319 ~s~~lGlilGV~~alfsg~c~i~~p~~~l~~pG~~~~l~~k~R~~~~ltd~~~Lkq~~~ny~~~p~a~~s~~k~~t~d~s 398 (1363)
T KOG3628|consen 319 PSQQLGLILGVLVALFSGYCTIGCPKEVLKPPGLIANLITKYRATWSLTDYAGLKQPVYNYQEDPKATLSFKKYKTPDLS 398 (1363)
T ss_pred cccccchhhhhhhhhhcCceeecCchhhcCCCcchhhhhccceeEEEeecccccCcccccccCCcccccchhhccCCCcc
Confidence 77788998999999999999888876 678999999999999998877555544332221 1224689
Q ss_pred CceEEEeecccCCHHHHHH
Q 019348 310 SLKLVGSGAAPLGKELMED 328 (342)
Q Consensus 310 ~lr~~~~gG~~l~~~~~~~ 328 (342)
++|.+.+.-..++.+.-+-
T Consensus 399 slk~C~Vtc~~vd~~~~~i 417 (1363)
T KOG3628|consen 399 SLKGCMVTCTAVDTEFQEI 417 (1363)
T ss_pred ceeeeEEeeeecchHHHHH
Confidence 9999999998888776543
No 130
>TIGR02304 aden_form_hyp probable adenylate-forming enzyme. Members of this family form a distinct clade within a larger family of proteins that also includes coenzyme F390 synthetase, an enzyme known in Methanobacterium thermoautotrophicum and a few other methanogenic archaea. That enzyme adenylates coenzyme F420 to F390, a reversible process, during oxygen stress. Other informative homologies include domains of the non-ribosomal peptide synthetases involved in activation by adenylation. The family defined by this model is likely to be of an adenylate-forming enzyme related to but distinct from coenzyme F390 synthetase.
Probab=98.68 E-value=1.7e-07 Score=84.15 Aligned_cols=139 Identities=15% Similarity=0.049 Sum_probs=92.2
Q ss_pred eEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhc-cccCCCeEEEEc--cchhHHHHHHHHHHHHhhcCCe-EEEcc-
Q 019348 194 AAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQE-LVGELDHVVLCV--LPMFHVFGLSVILYDQLQKGNC-VVSMG- 268 (342)
Q Consensus 194 ~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~-~~~~~~d~~~~~--~p~~~~~g~~~~~~~~l~~G~~-~v~~~- 268 (342)
-..+..||||||.|-....+................ .+...++++... .+. +. +..+..... +...+
T Consensus 101 ~~~v~~TSGSSG~p~~f~~~~~~~~~~~a~~~~~~~~~g~~~g~r~a~~~~~~~-~l-------y~~~~~~~~~~~~~~l 172 (430)
T TIGR02304 101 NISVGLSSGTSGRRGLFVVSPEEQQMWAGGILAKVLPDGLFAKHRIAFFLRADN-NL-------YQSVNNRWISLDFFDL 172 (430)
T ss_pred cEEEEECCCCCCCceEEEECHHHHHHHHHHHHhhhCccccccCCcEEEEEccCh-hH-------HHHHHhccceeeecCC
Confidence 345667999999998888887765433222212111 122333333332 221 21 222222211 22221
Q ss_pred CCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCCHHHHHHHHHhCCCCcccccC
Q 019348 269 KFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQKI 342 (342)
Q Consensus 269 ~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~Y 342 (342)
..+.+..++.|++++++++.+.|+.+..|++.....+.+ .+++.++++||.+++...+.+++.|| +++++.|
T Consensus 173 ~~~~~~~l~~L~~~~P~~L~g~pS~l~~LA~~~~~~~l~-~~~k~ii~~~E~l~~~~r~~Ie~~fg-~~V~~~Y 244 (430)
T TIGR02304 173 LAPFQAHIKRLNQRKPSIIVAPPSVLRALALEVMEGELT-IKPKKVISVAEVLEPQDRELIRNVFK-NTVHQIY 244 (430)
T ss_pred CcCHHHHHHHHHHhCCCEEEEcHHHHHHHHHHHHhcCCC-CCceEEEEccCCCCHHHHHHHHHHhC-CCeeEcc
Confidence 146799999999999999999999999999865443333 47899999999999999999999998 9999988
No 131
>PF04443 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR007534 LuxE is an acyl-protein synthetase found in bioluminescent bacteria. LuxE catalyses the formation of an acyl-protein thiolester from a fatty acid and a protein. This is the second step in the bioluminescent fatty acid reduction system, which converts tetradecanoic acid to the aldehyde substrate of the luciferase-catalysed bioluminescence reaction []. A conserved cysteine found at position 364 in Photobacterium phosphoreum LuxE (Q52100 from SWISSPROT) is thought to be acylated during the transfer of the acyl group from the synthetase subunit to the reductase. The C-terminal of the synthetase is though to act as a flexible arm to transfer acyl groups between the sites of activation and reduction []. A LuxE domain is also found in the Vibrio cholerae RBFN protein (Q06961 from SWISSPROT), which is involved in the biosynthesis of the O-antigen component 3-deoxy-L-glycero-tetronic acid. This entry represents the LuxE domain, which is found in archaeal and bacterial proteins.; GO: 0047474 long-chain fatty acid luciferin component ligase activity, 0008218 bioluminescence
Probab=96.04 E-value=0.11 Score=46.20 Aligned_cols=146 Identities=14% Similarity=0.124 Sum_probs=76.5
Q ss_pred CCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhh--hhhccccCC-CeEEEEccchhHH---HH-HHHHHHHHhhcCC
Q 019348 190 KQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMIS--AHQELVGEL-DHVVLCVLPMFHV---FG-LSVILYDQLQKGN 262 (342)
Q Consensus 190 ~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~--~~~~~~~~~-~d~~~~~~p~~~~---~g-~~~~~~~~l~~G~ 262 (342)
..+++..++-||||||.|--+.+.+..+..+...+. ......... .-.++...|-... .+ ........+..+.
T Consensus 87 ~~e~~~~~~tSSGTtG~~S~i~~D~~t~~~~~~~~~~~~~~~~~~~~~~~~il~l~p~~~~~~~~~~~~~~~~~~~~~~~ 166 (365)
T PF04443_consen 87 PEEEVEKVFTSSGTTGQPSRIFRDRETAERQQKSLNKIFQHFLGPSRLPMLILDLSPSPENRNSFSARYAGILGELFFGS 166 (365)
T ss_pred ChhhheeEEECCCCCCCCcEEEECHHHHHHHHHHHHHHHHhhcccccCCeEEEEecCCcccccchHHHHHHHHhhcccCc
Confidence 345677889999999998656555554444422211 111122221 2233333333211 11 1022333344555
Q ss_pred eEEEc-cCCCHHHHHHHHH----hccceEEEecHHHHHHHHcCCCCCcc--CCC-CceEEEeec------ccCC-HHHHH
Q 019348 263 CVVSM-GKFDIEMALRAIE----KYRVTVWWVVPPIILALAKNSLVRKF--DIS-SLKLVGSGA------APLG-KELME 327 (342)
Q Consensus 263 ~~v~~-~~~~~~~~~~~i~----~~~~t~~~~~P~~l~~l~~~~~~~~~--~l~-~lr~~~~gG------~~l~-~~~~~ 327 (342)
...+- ..++...+...+. +.++..+++.|.++..++...+..+. .|+ ..+.+-.|| +.++ .++.+
T Consensus 167 ~~~l~~~~ld~~~~~~~L~~~~~~~~pv~l~Gftf~~~~~~~~l~~~~~~~~L~~~s~vi~~GGwK~~~~e~v~r~ef~~ 246 (365)
T PF04443_consen 167 RFALDNDELDLEGLIEALFRAEHSGEPVLLFGFTFFIWFLLDELEERGIRFRLPKGSIVIHGGGWKGRRKEAVSREEFYA 246 (365)
T ss_pred eeeecCCccCHHHHHHHHHHHHhCCCCEEEECchHHHHHHHHHHHhcCCcccCCCCCEEEeCCCCCccccCccCHHHHHH
Confidence 54442 2357777776664 44688899988877766654433333 333 344444444 3465 46667
Q ss_pred HHHHhCCCC
Q 019348 328 DCQKNIPGA 336 (342)
Q Consensus 328 ~~~~~~~~~ 336 (342)
.+.+.|| +
T Consensus 247 ~l~~~~G-v 254 (365)
T PF04443_consen 247 RLQEVFG-V 254 (365)
T ss_pred HHHHHHC-C
Confidence 7778787 5
No 132
>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism]
Probab=95.87 E-value=0.07 Score=47.86 Aligned_cols=86 Identities=15% Similarity=0.053 Sum_probs=71.1
Q ss_pred cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCC--ChHHHHHHHHHHhCCeEeccCCCCCHHHHHHHhhhcCceEE
Q 019348 53 ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNS--IHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLV 130 (342)
Q Consensus 53 ~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~--~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~v 130 (342)
--+|+.|+...+..+|+.|...|..+||+|.++..-+ ..-+-..+|+.++|+.++|+.+.. -+.-..++++.+|.++
T Consensus 108 ~~~t~~D~~~wa~~~aR~~~~~g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~vip~~~g~-~~~~~~l~~df~~tvI 186 (438)
T COG1541 108 FGYTAKDIERWAELLARSLYSAGVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATVIPISGGN-TERQLELMKDFKPTVI 186 (438)
T ss_pred eecCHHHHHHHHHHHHHHHHHccCCCCCEEEEEeeeccccCCchhHHHHHhhCEEEEccCCcc-HHHHHHHHHhcCCcEE
Confidence 5789999999999999999999999999998887622 223678899999999999998843 4456778999999999
Q ss_pred EEcccchhh
Q 019348 131 ITVPELWDK 139 (342)
Q Consensus 131 i~~~~~~~~ 139 (342)
.+.+...-.
T Consensus 187 ~~tps~~l~ 195 (438)
T COG1541 187 AATPSYLLY 195 (438)
T ss_pred EEChHHHHH
Confidence 998765443
No 133
>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase. Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions.
Probab=92.14 E-value=1.3 Score=40.49 Aligned_cols=86 Identities=12% Similarity=0.105 Sum_probs=65.2
Q ss_pred cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCC--hHHHHHHHHHHhCCeEeccCCCCCHHHHHHHhhhcCceEE
Q 019348 53 ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSI--HFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLV 130 (342)
Q Consensus 53 ~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~--~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~v 130 (342)
-.+|..++......+++.+...|+++||++....+.+. ......++....|+..++++... .+.+...+++.+|.++
T Consensus 93 v~~t~~~~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~i~~~~~t~l 171 (422)
T TIGR02155 93 VGYTQNDIDTWSSVVARSIRAAGGRPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVVPISGGQ-TEKQVQLIQDFKPDII 171 (422)
T ss_pred eccCHHHHHHHHHHHHHHHHHcCCCCCcEEEEccCccccchhHHHHHHHHHcCcEEEecCCCC-HHHHHHHHHHHCCCEE
Confidence 34677788777777778888889999999887765543 22334677889999999887654 4778899999999999
Q ss_pred EEcccchhh
Q 019348 131 ITVPELWDK 139 (342)
Q Consensus 131 i~~~~~~~~ 139 (342)
++.+.....
T Consensus 172 ~~~Ps~l~~ 180 (422)
T TIGR02155 172 MVTPSYMLN 180 (422)
T ss_pred EEcHHHHHH
Confidence 988765543
No 134
>TIGR03335 F390_ftsA coenzyme F390 synthetase. This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen.
Probab=91.81 E-value=1.7 Score=40.06 Aligned_cols=81 Identities=16% Similarity=0.160 Sum_probs=62.0
Q ss_pred cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCh--HHHHHHHHHHhCCeEeccCCCCCHHHHHHHhhhcCceEE
Q 019348 53 ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIH--FPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLV 130 (342)
Q Consensus 53 ~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~--~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~v 130 (342)
--+|.+++...+...++.+...|+.+||++.++.+.+.. .....+++..+|+..++... .+....+++..++.++
T Consensus 104 v~~T~~dl~~~~~~~~r~~~~~G~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi~~~~---~~~~~~~i~~~~~t~l 180 (445)
T TIGR03335 104 FFLTWDDWKRYAEKYARSFVSQGFTAGDRMVICASYGMNVGANTMTLAAREVGMSIIPEGK---CTFPIRIIESYRPTGI 180 (445)
T ss_pred eeecHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCCcchhHHHHHHHHHHcCCEEEcCCc---hhHHHHHHHHhCCCEE
Confidence 457889998888888888888899999999998876643 23456788899998877653 2345678889999988
Q ss_pred EEcccc
Q 019348 131 ITVPEL 136 (342)
Q Consensus 131 i~~~~~ 136 (342)
+.....
T Consensus 181 ~~~ps~ 186 (445)
T TIGR03335 181 VASVFK 186 (445)
T ss_pred EECHHH
Confidence 876543
No 135
>TIGR03089 conserved hypothetical protein TIGR03089. This protein family is found, so far, only in the Actinobacteria (Streptomyces, Mycobacterium, Corynebacterium, Nocardia, Propionibacterium, etc.) and never more than one to a genome. Members show twilight-level sequence similarity to family of AMP-binding enzymes described by Pfam model pfam00501.
Probab=85.66 E-value=6.9 Score=32.27 Aligned_cols=54 Identities=19% Similarity=0.158 Sum_probs=44.0
Q ss_pred HHcCCCCCCEEEEECCCCCh--HHHHHHHHHHhCCeEeccCCCCCHHHHHHHhhhcCc
Q 019348 72 RHLGITKKDVVLIFAPNSIH--FPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNP 127 (342)
Q Consensus 72 ~~~g~~~g~~V~i~~~n~~~--~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~ 127 (342)
...|+.++|++. ..|-..- +...+++++..|+..+.+ +...++++-+.+++.++
T Consensus 171 ~~~~l~~~D~~l-~~Pl~H~~gl~~~~~~~l~~G~t~v~~-~rFd~~~~l~~i~~~~v 226 (227)
T TIGR03089 171 RAAGLPPGDRVL-VLAWTDLEDFLATLLAPLAAGGSLVLV-THPDPARLDQIAETERV 226 (227)
T ss_pred hhcCCCCCCeEE-ecCCCchHHHHHHHHHHhccCceEEEe-cCCCHHHHHHHHHhhcC
Confidence 556889999999 8887763 345689999999998887 68889999988888775
No 136
>PRK07656 long-chain-fatty-acid--CoA ligase; Validated
Probab=84.30 E-value=9.8 Score=35.46 Aligned_cols=98 Identities=16% Similarity=0.176 Sum_probs=69.5
Q ss_pred CCCceEEEeCC---CC----cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCh--HHHHHHHHHHhCCeEeccC
Q 019348 40 YSSKLALIDAD---SD----ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIH--FPICFLGVIAIGAIASTAN 110 (342)
Q Consensus 40 ~p~~~a~~~~~---~~----~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~--~~~~~lA~~~~G~~~v~l~ 110 (342)
.++.++++... ++ -.+|++.+...+..+...+ +++++|++....+.... +...+++++..|+..++.
T Consensus 164 ~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~- 239 (513)
T PRK07656 164 DPDDVADILFTSGTTGRPKGAMLTHRQLLSNAADWAEYL---GLTEGDRYLAANPFFHVFGYKAGVNAPLMRGATILPL- 239 (513)
T ss_pred CCCceEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhh---CCCCCCeEEEccchHHHHHHHHHHHHHHHcCceEEec-
Confidence 34566665332 22 4688888876665554443 77889998887775433 345678899999988765
Q ss_pred CCCCHHHHHHHhhhcCceEEEEcccchhhhh
Q 019348 111 PVYTVSELSKQVKDSNPKLVITVPELWDKVK 141 (342)
Q Consensus 111 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 141 (342)
+....+.+.+.+++.++.++...+.....+.
T Consensus 240 ~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~ 270 (513)
T PRK07656 240 PVFDPDEVFRLIETERITVLPGPPTMYNSLL 270 (513)
T ss_pred CcCCHHHHHHHHHHhCCeEEechHHHHHHHH
Confidence 5667888999999999999988877665543
No 137
>PRK06187 long-chain-fatty-acid--CoA ligase; Validated
Probab=83.31 E-value=15 Score=34.25 Aligned_cols=85 Identities=16% Similarity=0.184 Sum_probs=63.3
Q ss_pred cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChH-HHHHHHHHHhCCeEeccCCCCCHHHHHHHhhhcCceEEE
Q 019348 53 ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHF-PICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVI 131 (342)
Q Consensus 53 ~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~-~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi 131 (342)
-.+|++.+...+..... ..+++++|++....+....+ +...++++..|+..+..+.. +.+.+...+++.++..++
T Consensus 185 v~~t~~~l~~~~~~~~~---~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~G~~~v~~~~~-~~~~~~~~l~~~~~t~l~ 260 (521)
T PRK06187 185 VVLSHRNLFLHSLAVCA---WLKLSRDDVYLVIVPMFHVHAWGLPYLALMAGAKQVIPRRF-DPENLLDLIETERVTFFF 260 (521)
T ss_pred EEeehHHHHHHHHHHHH---hhCCCCCCEEEEeCCchHHhhHHHHHHHHHhCCEEEecCCC-CHHHHHHHHHHhCCeEEE
Confidence 36788888876666555 44788999988887755333 33445588889888777664 888899999999999999
Q ss_pred Ecccchhhhh
Q 019348 132 TVPELWDKVK 141 (342)
Q Consensus 132 ~~~~~~~~~~ 141 (342)
+.+.....+.
T Consensus 261 ~~p~~~~~l~ 270 (521)
T PRK06187 261 AVPTIWQMLL 270 (521)
T ss_pred chHHHHHHHH
Confidence 9877665543
No 138
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=80.12 E-value=16 Score=31.16 Aligned_cols=95 Identities=8% Similarity=0.045 Sum_probs=58.3
Q ss_pred CcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeEeccCCCC----CHHHHHHHhhhcCc
Q 019348 52 DESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVY----TVSELSKQVKDSNP 127 (342)
Q Consensus 52 ~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~----~~~~l~~~l~~~~~ 127 (342)
+..+-.+-+ .|...+|+.|++.| ..|..++.+......- .+...|..+..++-.. ..+++..+++..+|
T Consensus 9 ~~~iG~GHv-~Rcl~LA~~l~~~g----~~v~f~~~~~~~~~~~--~i~~~g~~v~~~~~~~~~~~d~~~~~~~l~~~~~ 81 (279)
T TIGR03590 9 SSEIGLGHV-MRCLTLARALHAQG----AEVAFACKPLPGDLID--LLLSAGFPVYELPDESSRYDDALELINLLEEEKF 81 (279)
T ss_pred CccccccHH-HHHHHHHHHHHHCC----CEEEEEeCCCCHHHHH--HHHHcCCeEEEecCCCchhhhHHHHHHHHHhcCC
Confidence 444444443 46788999997754 3566666665554433 3357777766664332 24568889999999
Q ss_pred eEEEEccc-----chhhhhccCCCeEEecCC
Q 019348 128 KLVITVPE-----LWDKVKDLNLPAVLLGSK 153 (342)
Q Consensus 128 ~~vi~~~~-----~~~~~~~~~~~~~~~~~~ 153 (342)
+++|+|.- ....++....+.+.+++.
T Consensus 82 d~vV~D~y~~~~~~~~~~k~~~~~l~~iDD~ 112 (279)
T TIGR03590 82 DILIVDHYGLDADWEKLIKEFGRKILVIDDL 112 (279)
T ss_pred CEEEEcCCCCCHHHHHHHHHhCCeEEEEecC
Confidence 99999852 223333334455666543
No 139
>TIGR01733 AA-adenyl-dom amino acid adenylation domain. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group.
Probab=77.90 E-value=29 Score=31.05 Aligned_cols=99 Identities=16% Similarity=0.183 Sum_probs=70.7
Q ss_pred CCceEEEeCCCC-------cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCh-HHHHHHHHHHhCCeEeccCCC
Q 019348 41 SSKLALIDADSD-------ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIH-FPICFLGVIAIGAIASTANPV 112 (342)
Q Consensus 41 p~~~a~~~~~~~-------~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~-~~~~~lA~~~~G~~~v~l~~~ 112 (342)
++.++++....+ -.+|++.+...+..+.. ..+++++|++....+.+.. .+..+++.+..|+..+..+..
T Consensus 119 ~~~~~~i~~TSGTtG~pK~v~~s~~~~~~~~~~~~~---~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~g~~~~~~~~~ 195 (408)
T TIGR01733 119 PDDLAYVIYTSGSTGRPKGVVVTHRSLVNLLAWLAR---RYGLDPDDRVLQFASLSFDASVEEIFGTLLAGATLVVPPED 195 (408)
T ss_pred CCCcEEEEEcCCCCCCCCEEEeccHHHHHHHHHHHH---hcCCCCCceEEEecCCccchhHHHHHHHHhCCCEEEEcChh
Confidence 466666643222 46678888766666655 4467789998888776644 455678888888888777665
Q ss_pred CC--HHHHHHHhhhcCceEEEEcccchhhhhc
Q 019348 113 YT--VSELSKQVKDSNPKLVITVPELWDKVKD 142 (342)
Q Consensus 113 ~~--~~~l~~~l~~~~~~~vi~~~~~~~~~~~ 142 (342)
.. ...+..+++..++..+++.+.....+..
T Consensus 196 ~~~~~~~~~~~~~~~~~t~l~~~p~~~~~l~~ 227 (408)
T TIGR01733 196 EERDAALLAALIAEHPVTVLNLTPSLLALLAA 227 (408)
T ss_pred hccCHHHHHHHHHHcCceEEEeCHHHHHHHHH
Confidence 54 6789999999999999998877766543
No 140
>PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated
Probab=77.86 E-value=29 Score=32.83 Aligned_cols=98 Identities=15% Similarity=0.194 Sum_probs=67.2
Q ss_pred CCCceEEEeCCCC-------cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCC--hHHHHHHHHHHhCCeEeccC
Q 019348 40 YSSKLALIDADSD-------ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSI--HFPICFLGVIAIGAIASTAN 110 (342)
Q Consensus 40 ~p~~~a~~~~~~~-------~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~--~~~~~~lA~~~~G~~~v~l~ 110 (342)
.++.++++...+| -.+|++.+...+.... ...++..+|++....|-.. .+....+..+..|+..+...
T Consensus 181 ~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~---~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~vv~~~ 257 (539)
T PRK06334 181 DPEDVAVILFTSGTEKLPKGVPLTHANLLANQRACL---KFFSPKEDDVMMSFLPPFHAYGFNSCTLFPLLSGVPVVFAY 257 (539)
T ss_pred CcCCEEEEEECCCCCCCCCEEEEcHHHHHHHHHHHH---HhcCCCCCceEEEecchHhhhhhHHHHHHHHHcCCeEEEec
Confidence 4677777644322 4688888876544433 3457788998888776432 22334567788888877655
Q ss_pred CCCCHHHHHHHhhhcCceEEEEcccchhhh
Q 019348 111 PVYTVSELSKQVKDSNPKLVITVPELWDKV 140 (342)
Q Consensus 111 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 140 (342)
....++.+.+.+++.++.++...+.....+
T Consensus 258 ~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l 287 (539)
T PRK06334 258 NPLYPKKIVEMIDEAKVTFLGSTPVFFDYI 287 (539)
T ss_pred CCCCHHHHHHHHHHhCCcEEEecHHHHHHH
Confidence 456788899999999999999887765544
No 141
>PRK08315 AMP-binding domain protein; Validated
Probab=77.47 E-value=26 Score=33.19 Aligned_cols=83 Identities=13% Similarity=0.149 Sum_probs=60.2
Q ss_pred cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCC--ChHHHHHHHHHHhCCeEeccCCCCCHHHHHHHhhhcCceEE
Q 019348 53 ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNS--IHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLV 130 (342)
Q Consensus 53 ~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~--~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~v 130 (342)
-.+|.+.+...+..+... .+++++|++....+-. ..++..+++.+..|+..+.......+..+...+++.++.++
T Consensus 217 v~~s~~~l~~~~~~~~~~---~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~l~~~~~t~~ 293 (559)
T PRK08315 217 ATLTHRNILNNGYFIGEA---MKLTEEDRLCIPVPLYHCFGMVLGNLACVTHGATMVYPGEGFDPLATLAAVEEERCTAL 293 (559)
T ss_pred EEeeHHHHHHHHHHHHHh---cCCCCCceEEEecCcHHHHHHHHHHHHHHhccceEEEecCCCCHHHHHHHHHHcCCeEE
Confidence 467888776555544433 4788999988777653 33445678888899888755566677888899999999999
Q ss_pred EEcccchh
Q 019348 131 ITVPELWD 138 (342)
Q Consensus 131 i~~~~~~~ 138 (342)
+..+....
T Consensus 294 ~~~P~~~~ 301 (559)
T PRK08315 294 YGVPTMFI 301 (559)
T ss_pred ecchHHHH
Confidence 87766543
No 142
>KOG1177 consensus Long chain fatty acid acyl-CoA ligase [Lipid transport and metabolism]
Probab=76.91 E-value=60 Score=30.08 Aligned_cols=119 Identities=16% Similarity=0.228 Sum_probs=82.8
Q ss_pred CCCCCCCCCCCCCCHHHHHhhhccc------------CCCceEEEe---CCC----CcceeHHHHHHHHHHHHHHHHHcC
Q 019348 15 LRPPLVLPSDPSFSMVHFLFRNSAS------------YSSKLALID---ADS----DESLSFSQFKSIVIKVSHSFRHLG 75 (342)
Q Consensus 15 ~~~~~~~~~~~~~~l~~~l~~~~~~------------~p~~~a~~~---~~~----~~~~Ty~~l~~~~~~la~~L~~~g 75 (342)
.+++.+++.. +.+.+++....++ .||..+-+. +.+ +-++|--++...+..++..+ |
T Consensus 197 ~~ed~~~~Ga--~~~sev~~~~s~~~~a~l~~~~k~~~pdd~~niQFTSGTTG~PKgatLsH~~~~Nna~~vg~r~---g 271 (596)
T KOG1177|consen 197 ADEDHPLPGA--FLLSEVLKAASKEERAKLADMSKWLSPDDAVNIQFTSGTTGAPKGATLSHYNFLNNARAVGARA---G 271 (596)
T ss_pred cCCCCcCCCc--eehHHHHHhcchHHHHHHHhhhhhcCCCCceEEEeccCCCCCCcceeeehhhhhhhHHHHHHHh---C
Confidence 3355566666 7777776654432 245554432 222 26899999998888877655 6
Q ss_pred CCCCCEEEEECCCCC----hHHHHHHHHHHhCCeEeccCCCCCHHHHHHHhhhcCceEEEEcccchhhh
Q 019348 76 ITKKDVVLIFAPNSI----HFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKV 140 (342)
Q Consensus 76 ~~~g~~V~i~~~n~~----~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 140 (342)
+...++ ++++|.. -.++..+|++..|+..|.-.|...+....+.+.+.++..++..+.+.-.+
T Consensus 272 ~~e~~~--i~~~~Pl~H~~G~~~~~ma~l~~gat~Vfp~~~f~~k~alqai~~ekcT~l~gtPtM~~Dl 338 (596)
T KOG1177|consen 272 YNEKHR--ICIPNPLYHCFGCVLGVMAALMHGATIVFPAPSFDPKDALQAISNEKCTTLYGTPTMFVDL 338 (596)
T ss_pred cCcceE--EEecCchHHHHHHHHHHHHHHHhCcEEEeeCCCCChHHHHHHHHhhceEEEecChHHHHHH
Confidence 655444 4445553 33567889999999999989999999999999999999999887665443
No 143
>PRK12583 acyl-CoA synthetase; Provisional
Probab=76.61 E-value=34 Score=32.33 Aligned_cols=83 Identities=20% Similarity=0.274 Sum_probs=59.9
Q ss_pred cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCC--ChHHHHHHHHHHhCCeEeccCCCCCHHHHHHHhhhcCceEE
Q 019348 53 ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNS--IHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLV 130 (342)
Q Consensus 53 ~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~--~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~v 130 (342)
-.+|++.+...+..+... .+++.+|++....+-. ...+..+++++..|+..+..........+.+.+++.++.++
T Consensus 219 v~~s~~~l~~~~~~~~~~---~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~v~~~~~~~~~~~~~~~i~~~~~t~l 295 (558)
T PRK12583 219 ATLSHHNILNNGYFVAES---LGLTEHDRLCVPVPLYHCFGMVLANLGCMTVGACLVYPNEAFDPLATLQAVEEERCTAL 295 (558)
T ss_pred EEeeHHHHHHHHHHHHHH---hCCCCCCeEEEecCchhhhhHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHcCCeEE
Confidence 467888886655554444 3788899887776543 34556678888889887754555677888899999999999
Q ss_pred EEcccchh
Q 019348 131 ITVPELWD 138 (342)
Q Consensus 131 i~~~~~~~ 138 (342)
+..+....
T Consensus 296 ~~~P~~~~ 303 (558)
T PRK12583 296 YGVPTMFI 303 (558)
T ss_pred eccHHHHH
Confidence 88766543
No 144
>PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ]. This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A ....
Probab=76.45 E-value=21 Score=32.11 Aligned_cols=91 Identities=16% Similarity=0.094 Sum_probs=63.8
Q ss_pred CCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhh-ccccCCCeEEEEccchhHHHHHHHHHHHHhhcCCeEEEc
Q 019348 189 VKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQ-ELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSM 267 (342)
Q Consensus 189 ~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~-~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~ 267 (342)
..++.++++. -....+|+.++...+..+.... ..+...++++....+-.. .++..+++++..|+..+..
T Consensus 7 ~~pd~~a~~~--------~~~~~~Ty~~l~~~v~~la~~L~~~g~~~~~~V~i~~~n~~--~~~~~~~A~~~~G~~~v~l 76 (417)
T PF00501_consen 7 RYPDRIALID--------DEGRSLTYKQLYERVRKLAAALRKLGVKKGDRVAILLPNSI--EFVVAFLACLRAGAIPVPL 76 (417)
T ss_dssp HSTTSEEEEE--------TTTEEEEHHHHHHHHHHHHHHHHHTTSSTTSEEEEEESSSH--HHHHHHHHHHHTT-EEEEE
T ss_pred hCCCceEEEE--------CCCEEEEHHHHHHHHHHHhhHHHHhCCCccccccccCCccc--eeeeeeccccccccccccc
Confidence 3567788776 1233567777777665544332 234567787777776653 3337789999999998888
Q ss_pred c-CCCHHHHHHHHHhccceEEEe
Q 019348 268 G-KFDIEMALRAIEKYRVTVWWV 289 (342)
Q Consensus 268 ~-~~~~~~~~~~i~~~~~t~~~~ 289 (342)
+ ......+...+++.++.++++
T Consensus 77 ~~~~~~~~~~~~l~~~~~~~ii~ 99 (417)
T PF00501_consen 77 DPSLSEDELRHILRQSGPKVIIT 99 (417)
T ss_dssp ETTSSHHHHHHHHHHHTESEEEE
T ss_pred ccccccccccccccccceeEEEE
Confidence 4 568899999999999999996
No 145
>PLN03051 acyl-activating enzyme; Provisional
Probab=74.96 E-value=27 Score=32.59 Aligned_cols=97 Identities=14% Similarity=0.032 Sum_probs=64.0
Q ss_pred CCceEEEeCC---CC----cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCh-HHHHHHHHHHhCCeEeccCCC
Q 019348 41 SSKLALIDAD---SD----ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIH-FPICFLGVIAIGAIASTANPV 112 (342)
Q Consensus 41 p~~~a~~~~~---~~----~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~-~~~~~lA~~~~G~~~v~l~~~ 112 (342)
++.++++... ++ -.+|.+.+...+... ....++..+|++....|-+.. ....+++++..|+..+..+..
T Consensus 118 ~~d~a~i~yTSGTTG~PKgV~~sh~~~~~~~~~~---~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~t~v~~~~~ 194 (499)
T PLN03051 118 VESVTNILFSSGTTGEPKAIPWTHLSPLRCASDG---WAHMDIQPGDVVCWPTNLGWMMGPWLLYSAFLNGATLALYGGA 194 (499)
T ss_pred ccceEEEEeCCCCCCCCceEEEccchHHHHHHHH---HHhcCCCCCCEEEEccCcceeeehHHHHHHHHcCCEEEecCCC
Confidence 4566665432 22 456776655433222 234578889988776665432 234567888999988877644
Q ss_pred CCHHHHHHHhhhcCceEEEEcccchhhh
Q 019348 113 YTVSELSKQVKDSNPKLVITVPELWDKV 140 (342)
Q Consensus 113 ~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 140 (342)
...+.+.+.+++.++.++...+.....+
T Consensus 195 ~~~~~~~~~i~~~~vt~~~~vP~~~~~l 222 (499)
T PLN03051 195 PLGRGFGKFVQDAGVTVLGLVPSIVKAW 222 (499)
T ss_pred CCcHHHHHHHHHhCCcEEEeCHHHHHHH
Confidence 5567889999999999999887766544
No 146
>PTZ00342 acyl-CoA synthetase; Provisional
Probab=74.71 E-value=39 Score=33.59 Aligned_cols=119 Identities=14% Similarity=0.063 Sum_probs=78.1
Q ss_pred CCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhc----cccCCC-----------eEEEEccchhHHHHHHHHH
Q 019348 190 KQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQE----LVGELD-----------HVVLCVLPMFHVFGLSVIL 254 (342)
Q Consensus 190 ~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~----~~~~~~-----------d~~~~~~p~~~~~g~~~~~ 254 (342)
.++.++++....| .+ -..+|++.+...+..+..... .+..++ |++....+-.. .++...
T Consensus 74 ~p~~~Al~~~~~g---~~-~~~~Ty~el~~~v~~~A~~L~~~~~~Gv~~g~~~~~~~~g~~d~V~i~~~N~~--ew~~~~ 147 (746)
T PTZ00342 74 NNNKIAIVEHSCG---EP-QNYITYGNFFKKVLSFSHSLNTYEGKGIPEKKYNEEQNNGKFKLLGLYGSNSI--NWLVAD 147 (746)
T ss_pred cCCceeEeccCCC---CC-ceeeeHHHHHHHHHHHHHHHHHHhhcCCCcCccccccccccccEEEEEcCCCH--HHHHHH
Confidence 3566776533222 11 124678877776665443333 244554 77777666543 343677
Q ss_pred HHHhhcCCeEEEc-cCCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeec
Q 019348 255 YDQLQKGNCVVSM-GKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGA 318 (342)
Q Consensus 255 ~~~l~~G~~~v~~-~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG 318 (342)
++++..|+..+-. +.+.++.+...++.-++.++++.+..+..+.+.. ..++.++.+++-+
T Consensus 148 lA~~~~Gav~Vpl~~~~~~~el~~il~~s~~~~lv~~~~~~~~l~~~~----~~~~~l~~ii~~~ 208 (746)
T PTZ00342 148 LACMLSGVTTLVMHSKFSIDVIVDILNETKLEWLCLDLDLVEGLLERK----NELPHLKKLIILD 208 (746)
T ss_pred HHHHHcCCeEEEecCCCCHHHHHHHHhcCCCCEEEEcHHHHHHHHHhh----ccCCCceEEEEEC
Confidence 8999999887766 6688999999999999999999888887776543 2355677666543
No 147
>TIGR01923 menE O-succinylbenzoate-CoA ligase. This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate.
Probab=73.88 E-value=23 Score=32.13 Aligned_cols=84 Identities=14% Similarity=0.168 Sum_probs=61.6
Q ss_pred cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCh-HHHHHHHHHHhCCeEeccCCCCCHHHHHHHhhhcCceEEE
Q 019348 53 ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIH-FPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVI 131 (342)
Q Consensus 53 ~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~-~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi 131 (342)
-.+|++.+...+..+...+ +++++|++....+-... .+..+++++..|+..+..++. +.+.+.+++.++.++.
T Consensus 129 v~~s~~~~~~~~~~~~~~~---~~~~~d~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~---~~~~~~l~~~~~t~~~ 202 (436)
T TIGR01923 129 VPHTFRNHYASAVGSKENL---GFTEDDNWLLSLPLYHISGLSILFRWLIEGATLRIVDKF---NQLLEMIANERVTHIS 202 (436)
T ss_pred EEEehHHHHHHHHHHHhhc---CCCCCceEEEccCcHhHHHHHHHHHHHhcCceEEecchH---HHHHHHHHHhCCeEEE
Confidence 4788998887777666554 78899998887765432 233567888999988777543 4888899999999999
Q ss_pred Ecccchhhhhc
Q 019348 132 TVPELWDKVKD 142 (342)
Q Consensus 132 ~~~~~~~~~~~ 142 (342)
..+.....+..
T Consensus 203 ~~P~~l~~l~~ 213 (436)
T TIGR01923 203 LVPTQLNRLLD 213 (436)
T ss_pred eHHHHHHHHHh
Confidence 88776655443
No 148
>TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated. This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present.
Probab=73.70 E-value=26 Score=32.69 Aligned_cols=86 Identities=16% Similarity=0.149 Sum_probs=64.7
Q ss_pred cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCh-HHHHHHHHHHhCCeEeccCCCCCHHHHHHHhhhcCceEEE
Q 019348 53 ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIH-FPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVI 131 (342)
Q Consensus 53 ~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~-~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi 131 (342)
-.+|.+.+...+......+ ++.+||++...++-+.. .+..+++++..|+..+.. +....+.+...+++.++.++.
T Consensus 179 v~~t~~~l~~~~~~~~~~~---~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~-~~~~~~~~~~~i~~~~~t~~~ 254 (515)
T TIGR03098 179 VVLSHRNLVAGAQSVATYL---ENRPDDRLLAVLPLSFDYGFNQLTTAFYVGATVVLH-DYLLPRDVLKALEKHGITGLA 254 (515)
T ss_pred EEEecHHHHHHHHHHHHHh---CCCcccEEEEECchhhHhHHHHHHHHHHcCCEEEEc-CCCCHHHHHHHHHHcCCceEe
Confidence 5678888877666655443 67889999888876543 345667889999988765 456788899999999999999
Q ss_pred Ecccchhhhhc
Q 019348 132 TVPELWDKVKD 142 (342)
Q Consensus 132 ~~~~~~~~~~~ 142 (342)
..+.....+..
T Consensus 255 ~~P~~~~~l~~ 265 (515)
T TIGR03098 255 AVPPLWAQLAQ 265 (515)
T ss_pred cChHHHHHHHh
Confidence 98877666543
No 149
>PRK06164 acyl-CoA synthetase; Validated
Probab=73.69 E-value=34 Score=32.22 Aligned_cols=97 Identities=15% Similarity=0.144 Sum_probs=68.1
Q ss_pred CCceEEEeCCCC-------cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCh-HHHHHHHHHHhCCeEeccCCC
Q 019348 41 SSKLALIDADSD-------ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIH-FPICFLGVIAIGAIASTANPV 112 (342)
Q Consensus 41 p~~~a~~~~~~~-------~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~-~~~~~lA~~~~G~~~v~l~~~ 112 (342)
++.++++...+| -.+|.+.+...+..++..+ ++.+++++...+|-+.. .+..+++++..|+..+.. +.
T Consensus 180 ~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~-~~ 255 (540)
T PRK06164 180 PDAGALLFTTSGTTSGPKLVLHRQATLLRHARAIARAY---GYDPGAVLLAALPFCGVFGFSTLLGALAGGAPLVCE-PV 255 (540)
T ss_pred CCceEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhc---CCCCCCEEEEcCCchhHHHHHHHHHHHhcCceEEec-CC
Confidence 466776653222 4678888876666555554 67789998888876532 234567788888887665 45
Q ss_pred CCHHHHHHHhhhcCceEEEEcccchhhhh
Q 019348 113 YTVSELSKQVKDSNPKLVITVPELWDKVK 141 (342)
Q Consensus 113 ~~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 141 (342)
.....+...+++.++.+++..+.....+.
T Consensus 256 ~~~~~~~~~l~~~~~t~~~~~p~~l~~l~ 284 (540)
T PRK06164 256 FDAARTARALRRHRVTHTFGNDEMLRRIL 284 (540)
T ss_pred CCHHHHHHHHHHhCCeeecCCHHHHHHHH
Confidence 67778899999999999998877665543
No 150
>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=73.46 E-value=22 Score=31.83 Aligned_cols=65 Identities=17% Similarity=0.184 Sum_probs=49.8
Q ss_pred HHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeEeccCCC-----CCHHHHHHHhhhcCceEEEE
Q 019348 64 VIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPV-----YTVSELSKQVKDSNPKLVIT 132 (342)
Q Consensus 64 ~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~-----~~~~~l~~~l~~~~~~~vi~ 132 (342)
...+.-.|+..++++||-|.+ .+..|+...=++...|+.+|.+|-+ .+++.++..+..- +++|+.
T Consensus 59 T~AL~laL~al~ig~GDeVI~---ps~TfvATan~i~~~Ga~PVFvDid~~T~nid~~~ie~aIt~~-tKAIip 128 (374)
T COG0399 59 TAALHLALLALAIGPGDEVIV---PSFTFVATANAVLLVGAKPVFVDIDPDTLNIDPDLIEAAITPR-TKAIIP 128 (374)
T ss_pred HHHHHHHHHhcCCCCCCEEEe---cCCchHHHHHHHHHcCCeEEEEecCCcccCCCHHHHHHHcccC-CeEEEE
Confidence 445566677778999996554 3678999999999999999988754 4778888888764 666664
No 151
>PRK04319 acetyl-CoA synthetase; Provisional
Probab=71.67 E-value=37 Score=32.33 Aligned_cols=98 Identities=10% Similarity=0.006 Sum_probs=66.3
Q ss_pred CCceEEEeCC---CC----cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCh--HHHHHHHHHHhCCeEeccCC
Q 019348 41 SSKLALIDAD---SD----ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIH--FPICFLGVIAIGAIASTANP 111 (342)
Q Consensus 41 p~~~a~~~~~---~~----~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~--~~~~~lA~~~~G~~~v~l~~ 111 (342)
++.++++... ++ -.+|.+.+...+.... ...++.++|++....+.... ....+++.+..|+..+....
T Consensus 204 ~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~---~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~l~~G~~~v~~~~ 280 (570)
T PRK04319 204 REDGAILHYTSGSTGKPKGVLHVHNAMLQHYQTGK---YVLDLHEDDVYWCTADPGWVTGTSYGIFAPWLNGATNVIDGG 280 (570)
T ss_pred CCCCEEEEeCCCCCCCCCEEEEecHHHHHHHHHHH---HhcCCCCCceEEecCChHHhhCchHHHHHHHhcCceEEEECC
Confidence 4556665332 22 3677877755443333 34577888987665554432 24557788899998877766
Q ss_pred CCCHHHHHHHhhhcCceEEEEcccchhhhh
Q 019348 112 VYTVSELSKQVKDSNPKLVITVPELWDKVK 141 (342)
Q Consensus 112 ~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 141 (342)
...++.+...+++.++.++...+.....+.
T Consensus 281 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~ 310 (570)
T PRK04319 281 RFSPERWYRILEDYKVTVWYTAPTAIRMLM 310 (570)
T ss_pred CCCHHHHHHHHHHcCCeEEEeCHHHHHHHH
Confidence 778889999999999999998877665543
No 152
>PRK06188 acyl-CoA synthetase; Validated
Probab=71.22 E-value=52 Score=30.82 Aligned_cols=84 Identities=11% Similarity=0.086 Sum_probs=62.9
Q ss_pred cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeEeccCCCCCHHHHHHHhhhcCceEEEE
Q 019348 53 ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVIT 132 (342)
Q Consensus 53 ~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~ 132 (342)
-.+|++.+...+.... ...++..+|++....+-+..+...+++.+..|+..+..+ ...++.+.+.+++.++.++..
T Consensus 186 v~~s~~~l~~~~~~~~---~~~~~~~~~~~l~~~pl~~~~g~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~ 261 (524)
T PRK06188 186 VMGTHRSIATMAQIQL---AEWEWPADPRFLMCTPLSHAGGAFFLPTLLRGGTVIVLA-KFDPAEVLRAIEEQRITATFL 261 (524)
T ss_pred eeeehHHHHHHHHHHH---hhcCCCcCcEEEEecCchhhhhHHHHHHHHcCCEEEEcC-CCCHHHHHHHHHHhCCEEEEe
Confidence 4577777766554433 445778899998888877766667788888898887765 456788999999999999988
Q ss_pred cccchhhh
Q 019348 133 VPELWDKV 140 (342)
Q Consensus 133 ~~~~~~~~ 140 (342)
.+.....+
T Consensus 262 ~P~~l~~l 269 (524)
T PRK06188 262 VPTMIYAL 269 (524)
T ss_pred hHHHHHHH
Confidence 77665544
No 153
>PLN02736 long-chain acyl-CoA synthetase
Probab=70.62 E-value=54 Score=31.90 Aligned_cols=101 Identities=12% Similarity=-0.021 Sum_probs=70.8
Q ss_pred hHhHHHHHHHhhhhhhhh-ccccCCCeEEEEccchhHHHHHHHHHHHHhhcCCeEEEc-cCCCHHHHHHHHHhccceEEE
Q 019348 211 ILTHKNFIAASLMISAHQ-ELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSM-GKFDIEMALRAIEKYRVTVWW 288 (342)
Q Consensus 211 ~~t~~~l~~~~~~~~~~~-~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~-~~~~~~~~~~~i~~~~~t~~~ 288 (342)
.+|++.+...+..+.... ..+..++|++...++-.-- ++...++++..|+.++.. +.+.++.+...+++.++.+++
T Consensus 78 ~lTy~el~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~e--~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~l~ 155 (651)
T PLN02736 78 WMTYGEAGTARTAIGSGLVQHGIPKGACVGLYFINRPE--WLIVDHACSAYSYVSVPLYDTLGPDAVKFIVNHAEVAAIF 155 (651)
T ss_pred EEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHH--HHHHHHHHHHcCCeEEEeecCCCHHHHHHHHhccCCCEEE
Confidence 368888877655533222 3346788888877766543 335678999999988865 567899999999999999999
Q ss_pred ecHHHHHHHHcCCCCCccCCCCceEEEee
Q 019348 289 VVPPIILALAKNSLVRKFDISSLKLVGSG 317 (342)
Q Consensus 289 ~~P~~l~~l~~~~~~~~~~l~~lr~~~~g 317 (342)
+.+..+..+.... ..++.++.+++-
T Consensus 156 ~~~~~~~~~~~~~----~~~~~l~~ii~~ 180 (651)
T PLN02736 156 CVPQTLNTLLSCL----SEIPSVRLIVVV 180 (651)
T ss_pred ECHHHHHHHHHHh----hcCCCceEEEEE
Confidence 9988776665432 124556666654
No 154
>PLN02860 o-succinylbenzoate-CoA ligase
Probab=68.74 E-value=60 Score=30.86 Aligned_cols=97 Identities=21% Similarity=0.211 Sum_probs=65.8
Q ss_pred CCCceEEEeCC---CC----cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCh-HHHHHHHHHHhCCeEeccCC
Q 019348 40 YSSKLALIDAD---SD----ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIH-FPICFLGVIAIGAIASTANP 111 (342)
Q Consensus 40 ~p~~~a~~~~~---~~----~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~-~~~~~lA~~~~G~~~v~l~~ 111 (342)
.++.++++... ++ -.+|.+.+...+.... ...++.++|++....|-... .+...++.+..|+..+.. +
T Consensus 170 ~~~~~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~---~~~~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~~~v~~-~ 245 (563)
T PLN02860 170 APDDAVLICFTSGTTGRPKGVTISHSALIVQSLAKI---AIVGYGEDDVYLHTAPLCHIGGLSSALAMLMVGACHVLL-P 245 (563)
T ss_pred CCCCeEEEEecCCCCCCCceEEeehHHHHHHHHHHH---hhcCCCCCCEEEEecCchhhccHHHHHHHHHcCceEEec-C
Confidence 35667765332 22 4677777765444433 34578889988887765432 234567788888877665 4
Q ss_pred CCCHHHHHHHhhhcCceEEEEcccchhhh
Q 019348 112 VYTVSELSKQVKDSNPKLVITVPELWDKV 140 (342)
Q Consensus 112 ~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 140 (342)
......+...+++.++.++...+.....+
T Consensus 246 ~~~~~~~~~~i~~~~vt~~~~~P~~~~~l 274 (563)
T PLN02860 246 KFDAKAALQAIKQHNVTSMITVPAMMADL 274 (563)
T ss_pred CCCHHHHHHHHHHhCCeeEEeChHHHHHH
Confidence 56788899999999999999887766544
No 155
>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions. The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....
Probab=68.56 E-value=18 Score=32.19 Aligned_cols=65 Identities=20% Similarity=0.278 Sum_probs=45.4
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeEeccCCC-----CCHHHHHHHhhhcCceEEEEc
Q 019348 65 IKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPV-----YTVSELSKQVKDSNPKLVITV 133 (342)
Q Consensus 65 ~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~-----~~~~~l~~~l~~~~~~~vi~~ 133 (342)
..+-..|...|+++||.|++- ...+....-|+..+|+.++.+|-. ..++.+.+.+..-. ++|+..
T Consensus 51 ~Al~~al~~l~~~~gdeVi~p---~~t~~~~~~ai~~~G~~pv~~Di~~~~~~id~~~~~~~i~~~t-~ai~~~ 120 (363)
T PF01041_consen 51 SALHLALRALGLGPGDEVIVP---AYTFPATASAILWAGAEPVFVDIDPETLNIDPEALEKAITPKT-KAILVV 120 (363)
T ss_dssp HHHHHHHHHTTGGTTSEEEEE---SSS-THHHHHHHHTT-EEEEE-BETTTSSB-HHHHHHHHHTTE-EEEEEE
T ss_pred HHHHHHHHhcCCCcCceEecC---CCcchHHHHHHHHhccEEEEEeccCCcCCcCHHHHHHHhccCc-cEEEEe
Confidence 455566777899999998874 567888889999999999888755 36677777776433 666553
No 156
>PLN02247 indole-3-acetic acid-amido synthetase
Probab=68.44 E-value=5.3 Score=38.00 Aligned_cols=31 Identities=29% Similarity=0.242 Sum_probs=25.8
Q ss_pred CCCCeEEEEcCCCCCC-CchhhhHhHHHHHHH
Q 019348 190 KQTDAAALLYSSGTTG-VSKGVILTHKNFIAA 220 (342)
Q Consensus 190 ~~~~~~~i~~TSGtTG-~pK~v~~t~~~l~~~ 220 (342)
.++.+.+...|||||| .+|.+.+|...+-..
T Consensus 87 t~~pi~~F~~SSGTT~g~~K~IP~t~e~l~~~ 118 (606)
T PLN02247 87 SAQPITELLTSSGTSGGQPKLMPSTAEELDRK 118 (606)
T ss_pred CCCCcceeeccCCCCCCceeEeeccHHHHHHH
Confidence 3677888999999995 899999998876554
No 157
>PF03321 GH3: GH3 auxin-responsive promoter; InterPro: IPR004993 Transcription of the gene family, GH3, has been shown to be specifically induced by the plant hormone auxin. The auxin-responsive GH3 gene promoter is composed of multiple auxin response elements (AuxREs), and each AuxRE contributes incrementally to the strong auxin inducibility to the promoter.; PDB: 4EPL_A 4EQ4_B 4EWV_B 4EQL_B 4EPM_A.
Probab=67.86 E-value=0.92 Score=42.66 Aligned_cols=32 Identities=25% Similarity=0.192 Sum_probs=25.7
Q ss_pred CCCCCCeEEEEcCCCCCCC-chhhhHhHHHHHH
Q 019348 188 SVKQTDAAALLYSSGTTGV-SKGVILTHKNFIA 219 (342)
Q Consensus 188 ~~~~~~~~~i~~TSGtTG~-pK~v~~t~~~l~~ 219 (342)
-..++.+.+...||||||. +|-+.+|...+..
T Consensus 76 vL~~~~~~~f~~TSGTTg~~~K~IP~T~~~l~~ 108 (528)
T PF03321_consen 76 VLTPGPPIYFALTSGTTGGKSKLIPYTKEFLKE 108 (528)
T ss_dssp CTSSS--SEEEEEEEEETTEEEEEEESHHHHHH
T ss_pred CCCCCCCCeEEeCCCCCCCCCceeeccHHHHHH
Confidence 4556778899999999999 9999999888765
No 158
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=67.59 E-value=64 Score=25.98 Aligned_cols=89 Identities=16% Similarity=0.141 Sum_probs=53.4
Q ss_pred eEEEEccch-hHHHHHHHHHHHHhhcCCeEEEc-cCCCHHHHHHHHHhccceEEEecHH------HHHHHHcCCCCCccC
Q 019348 236 HVVLCVLPM-FHVFGLSVILYDQLQKGNCVVSM-GKFDIEMALRAIEKYRVTVWWVVPP------IILALAKNSLVRKFD 307 (342)
Q Consensus 236 d~~~~~~p~-~~~~g~~~~~~~~l~~G~~~v~~-~~~~~~~~~~~i~~~~~t~~~~~P~------~l~~l~~~~~~~~~~ 307 (342)
.+++.+.+- .|..|....-..--..|..++.. ....++++.+.+.++++.++.++-. .+..+++...... .
T Consensus 84 ~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~~p~~~l~~~~~~~~~d~v~lS~~~~~~~~~~~~~i~~lr~~~-~ 162 (201)
T cd02070 84 KVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRDVPPEEFVEAVKEHKPDILGLSALMTTTMGGMKEVIEALKEAG-L 162 (201)
T ss_pred eEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEeccccccHHHHHHHHHHHHHCC-C
Confidence 444455553 78888744444445678887755 4567899999999999988765532 2222322221111 1
Q ss_pred CCCceEEEeecccCCHHHH
Q 019348 308 ISSLKLVGSGAAPLGKELM 326 (342)
Q Consensus 308 l~~lr~~~~gG~~l~~~~~ 326 (342)
...++ +++||.++..+..
T Consensus 163 ~~~~~-i~vGG~~~~~~~~ 180 (201)
T cd02070 163 RDKVK-VMVGGAPVNQEFA 180 (201)
T ss_pred CcCCe-EEEECCcCCHHHH
Confidence 11333 7788888887643
No 159
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=67.27 E-value=18 Score=27.14 Aligned_cols=41 Identities=12% Similarity=0.055 Sum_probs=32.9
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCC---CChHHHHHHHHHHhCCe
Q 019348 65 IKVSHSFRHLGITKKDVVLIFAPN---SIHFPICFLGVIAIGAI 105 (342)
Q Consensus 65 ~~la~~L~~~g~~~g~~V~i~~~n---~~~~~~~~lA~~~~G~~ 105 (342)
..+...|.+.|+.+++.|.+.+.. +.....+++++-.+|.-
T Consensus 81 ~~~~~~~~~~GI~~~~~vVvY~~~~~~g~~A~r~~~~l~~~G~~ 124 (138)
T cd01445 81 AEFAAMFEAKGIDLDKHLIATDGDDLGGFTACHIALAARLCGHP 124 (138)
T ss_pred HHHHHHHHHcCCCCCCeEEEECCCCCcchHHHHHHHHHHHcCCC
Confidence 467888899999999999999975 56666777777888854
No 160
>PRK08308 acyl-CoA synthetase; Validated
Probab=67.21 E-value=72 Score=28.81 Aligned_cols=98 Identities=8% Similarity=0.146 Sum_probs=67.1
Q ss_pred CCCceEEEeCC---CC----cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCh--HHHHHHHHHHhCCeEeccC
Q 019348 40 YSSKLALIDAD---SD----ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIH--FPICFLGVIAIGAIASTAN 110 (342)
Q Consensus 40 ~p~~~a~~~~~---~~----~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~--~~~~~lA~~~~G~~~v~l~ 110 (342)
.++.++++... ++ -.+|++.+...+..+... .++..+|++....|.... ++..++..+..|+..+..+
T Consensus 99 ~~~~~~~i~~TSGtTG~PKgv~~s~~~l~~~~~~~~~~---~~~~~~~~~~~~~p~~h~~g~~~~~~~~l~~G~~~~~~~ 175 (414)
T PRK08308 99 LAEEPSLLQYSSGTTGEPKLIRRSWTEIDREIEAYNEA---LNCEQDETPIVACPVTHSYGLICGVLAALTRGSKPVIIT 175 (414)
T ss_pred CCCCceEEEECCCCCCCCcEEEEehHhHHHHHHHHHHh---hCCCcccEEEEecCcHHHHHHHHHHHHHHHcCCEEEecC
Confidence 34556655332 22 467888887666555544 356778888777776543 3456788889998877665
Q ss_pred CCCCHHHHHHHhhhcCceEEEEcccchhhhh
Q 019348 111 PVYTVSELSKQVKDSNPKLVITVPELWDKVK 141 (342)
Q Consensus 111 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 141 (342)
. ..++.+...+++.++.+++..+.....+.
T Consensus 176 ~-~~~~~~~~~l~~~~~t~~~~~P~~~~~l~ 205 (414)
T PRK08308 176 N-KNPKFALNILRNTPQHILYAVPLMLHILG 205 (414)
T ss_pred C-CCHHHHHHHHHHhCCeEEEcCHHHHHHHH
Confidence 4 45677888899999999988776665543
No 161
>PLN02249 indole-3-acetic acid-amido synthetase
Probab=67.14 E-value=2.6 Score=40.19 Aligned_cols=30 Identities=23% Similarity=0.240 Sum_probs=25.4
Q ss_pred CCCCCeEEEEcCCCCC-CCchhhhHhHHHHH
Q 019348 189 VKQTDAAALLYSSGTT-GVSKGVILTHKNFI 218 (342)
Q Consensus 189 ~~~~~~~~i~~TSGtT-G~pK~v~~t~~~l~ 218 (342)
..++.+.+...||||| |.+|.+.+|...+-
T Consensus 97 L~~~pi~~f~~SSGTT~g~~K~IP~T~~~l~ 127 (597)
T PLN02249 97 LSSHPITEFLTSSGTSAGERKLMPTIEEDID 127 (597)
T ss_pred eCCCchhhhcccCCCCCCceeEEeccHHHHH
Confidence 4567788899999999 89999999996664
No 162
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=66.96 E-value=59 Score=26.55 Aligned_cols=90 Identities=18% Similarity=0.201 Sum_probs=58.1
Q ss_pred CeEEEEccc-hhHHHHHHHHHHHHhhcCCeEEEcc-CCCHHHHHHHHHhccceEEEecHH---HH---HHHHcCCCCCcc
Q 019348 235 DHVVLCVLP-MFHVFGLSVILYDQLQKGNCVVSMG-KFDIEMALRAIEKYRVTVWWVVPP---II---LALAKNSLVRKF 306 (342)
Q Consensus 235 ~d~~~~~~p-~~~~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~---~l---~~l~~~~~~~~~ 306 (342)
..+++.+.+ =.|..|....-..--..|..++... +..++++.+.+.++++.++.++-. .. +.+++......
T Consensus 89 ~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~~v~~~~~~~~~~V~lS~~~~~~~~~~~~~i~~L~~~~- 167 (213)
T cd02069 89 GKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMVPIEKILEAAKEHKADIIGLSGLLVPSLDEMVEVAEEMNRRG- 167 (213)
T ss_pred CeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEccchhccHHHHHHHHHHHHhcC-
Confidence 344555444 3788887555555556788888775 567899999999999998766522 22 22232221111
Q ss_pred CCCCceEEEeecccCCHHHHHH
Q 019348 307 DISSLKLVGSGAAPLGKELMED 328 (342)
Q Consensus 307 ~l~~lr~~~~gG~~l~~~~~~~ 328 (342)
+ .++ +++||.+++.+..+.
T Consensus 168 -~-~~~-i~vGG~~~~~~~~~~ 186 (213)
T cd02069 168 -I-KIP-LLIGGAATSRKHTAV 186 (213)
T ss_pred -C-CCe-EEEEChhcCHHHHhh
Confidence 1 343 788999999888765
No 163
>PLN02565 cysteine synthase
Probab=66.79 E-value=57 Score=28.57 Aligned_cols=91 Identities=16% Similarity=0.013 Sum_probs=62.1
Q ss_pred ceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCC-CCCCEEEEECCCCChHHHHHHHHHHhCCeEeccCCCCCHHHHHHH
Q 019348 43 KLALIDADSDESLSFSQFKSIVIKVSHSFRHLGI-TKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQ 121 (342)
Q Consensus 43 ~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~-~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~ 121 (342)
++.+.....+-+-||++= -+..+-..+.+.|. .+|....+....+-.-...-+++..+|.-++.+=|...+......
T Consensus 31 ~i~~K~E~~nPtGSfKdR--~A~~~l~~~~~~g~~~~g~~~vv~aSsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~ 108 (322)
T PLN02565 31 RIAAKLEMMEPCSSVKDR--IGYSMITDAEEKGLIKPGESVLIEPTSGNTGIGLAFMAAAKGYKLIITMPASMSLERRII 108 (322)
T ss_pred eEEEEecccCCccchHHH--HHHHHHHHHHHcCCCCCCCcEEEEECCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHH
Confidence 455555433444455542 23333444445554 778665566666777777788888999988777777777788999
Q ss_pred hhhcCceEEEEccc
Q 019348 122 VKDSNPKLVITVPE 135 (342)
Q Consensus 122 l~~~~~~~vi~~~~ 135 (342)
++..+.+++++++.
T Consensus 109 i~~~GA~V~~~~~~ 122 (322)
T PLN02565 109 LLAFGAELVLTDPA 122 (322)
T ss_pred HHHcCCEEEEeCCC
Confidence 99999999999863
No 164
>PRK08316 acyl-CoA synthetase; Validated
Probab=65.61 E-value=78 Score=29.49 Aligned_cols=84 Identities=10% Similarity=0.131 Sum_probs=60.5
Q ss_pred cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCh--HHHHHHHHHHhCCeEeccCCCCCHHHHHHHhhhcCceEE
Q 019348 53 ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIH--FPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLV 130 (342)
Q Consensus 53 ~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~--~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~v 130 (342)
-.+|++.+...+. ......+++++|++....|-... +...+++++..|+..++.+. ...+.+...+++.++.++
T Consensus 189 v~~s~~~l~~~~~---~~~~~~~~~~~~~~~~~~p~~h~~g~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~i~~~~~t~~ 264 (523)
T PRK08316 189 AMLTHRALIAEYV---SCIVAGDMSADDIPLHALPLYHCAQLDVFLGPYLYVGATNVILDA-PDPELILRTIEAERITSF 264 (523)
T ss_pred EEEecHHHHHHHH---HHHHHhCCCCCceEEEccCCchhhhHHHHHHHHHhcCceEEEecC-CCHHHHHHHHHHhCCeEE
Confidence 4688888765543 33445578999998887775543 23446677888998887754 467889999999999999
Q ss_pred EEcccchhhh
Q 019348 131 ITVPELWDKV 140 (342)
Q Consensus 131 i~~~~~~~~~ 140 (342)
++.+.....+
T Consensus 265 ~~~P~~~~~l 274 (523)
T PRK08316 265 FAPPTVWISL 274 (523)
T ss_pred EeCHHHHHHH
Confidence 9877665444
No 165
>TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase. This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041).
Probab=65.54 E-value=36 Score=30.56 Aligned_cols=60 Identities=15% Similarity=0.124 Sum_probs=38.7
Q ss_pred HHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeEeccCCC-----CCHHHHHHHhhhcCceEEEEc
Q 019348 70 SFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPV-----YTVSELSKQVKDSNPKLVITV 133 (342)
Q Consensus 70 ~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~-----~~~~~l~~~l~~~~~~~vi~~ 133 (342)
.+...++++||.|++-. +.+.....++...|+.++.++.. ...+++...+.. ++++|+..
T Consensus 62 ~l~al~~~pGd~Viv~~---~t~~~~~~~~~~~G~~~v~vd~d~~~~~~d~~~le~~i~~-~tk~Iip~ 126 (376)
T TIGR02379 62 AALLLDIQPGDEVIMPS---YTFVSTANAFVLRGAKIVFVDIRPDTMNIDETLIESAITH-RTKAIVPV 126 (376)
T ss_pred HHHHcCCCCcCEEEECC---CCcHHHHHHHHHcCCEEEEEecCCCcCCCCHHHHHHhcCc-CceEEEEe
Confidence 34445788999887643 45666667778889887777643 345666666653 56666543
No 166
>PRK06839 acyl-CoA synthetase; Validated
Probab=65.33 E-value=83 Score=29.09 Aligned_cols=98 Identities=12% Similarity=0.027 Sum_probs=69.1
Q ss_pred CCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhh--ccccCCCeEEEEccchhHHHHHHHHHHHHhhcCCeEEEc
Q 019348 190 KQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQ--ELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSM 267 (342)
Q Consensus 190 ~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~--~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~ 267 (342)
.++.++++. + ...+|+..+...+..+.... ..+..+++++....+-... +...+++++..|+..+..
T Consensus 15 ~p~~~a~~~---~------~~~~ty~~l~~~~~~la~~L~~~~g~~~~~~V~i~~~~~~~--~~~~~la~~~~G~~~~~~ 83 (496)
T PRK06839 15 HPDRIAIIT---E------EEEMTYKQLHEYVSKVAAYLIYELNVKKGERIAILSQNSLE--YIVLLFAIAKVECIAVPL 83 (496)
T ss_pred CCCCeEEEE---C------CceEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHH--HHHHHHHHHhcCcEEEec
Confidence 345666663 1 34578888887766544332 2345678888877766543 336788999999988877
Q ss_pred c-CCCHHHHHHHHHhccceEEEecHHHHHHHH
Q 019348 268 G-KFDIEMALRAIEKYRVTVWWVVPPIILALA 298 (342)
Q Consensus 268 ~-~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~ 298 (342)
+ ...+.++...+++.+++.++..+.....+.
T Consensus 84 ~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~ 115 (496)
T PRK06839 84 NIRLTENELIFQLKDSGTTVLFVEKTFQNMAL 115 (496)
T ss_pred CcccCHHHHHHHHHhcCceEEEEcHHHHHHHH
Confidence 5 467889999999999999999887765443
No 167
>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional
Probab=65.08 E-value=41 Score=30.14 Aligned_cols=59 Identities=14% Similarity=0.111 Sum_probs=39.3
Q ss_pred HHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeEeccCCC-----CCHHHHHHHhhhcCceEEEEc
Q 019348 71 FRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPV-----YTVSELSKQVKDSNPKLVITV 133 (342)
Q Consensus 71 L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~-----~~~~~l~~~l~~~~~~~vi~~ 133 (342)
+...++++||.|++-. +.+.....++...|+.++.++.. ...+++.+.+.. ++++|+..
T Consensus 63 l~~~~~~~Gd~Viv~~---~t~~~~~~~~~~~G~~~v~~d~d~~~~~~d~~~le~~i~~-~tk~i~~~ 126 (375)
T PRK11706 63 ALLLDIQPGDEVIMPS---YTFVSTANAFVLRGAKIVFVDIRPDTMNIDETLIEAAITP-KTRAIVPV 126 (375)
T ss_pred HHHhCCCCCCEEEECC---CCcHHHHHHHHHcCCEEEEEecCCCcCCcCHHHHHHhcCC-CCeEEEEe
Confidence 3344778999887743 34556667778889987777543 356777777754 56766643
No 168
>PRK09274 peptide synthase; Provisional
Probab=64.87 E-value=71 Score=30.16 Aligned_cols=99 Identities=10% Similarity=0.019 Sum_probs=65.2
Q ss_pred CCCeEEEEcCCCCC-CCchhhhHhHHHHHHHhhhhhhhh-ccccCCCeEEEEccchhHHHHHHHHHHHHhhcCCeEEEcc
Q 019348 191 QTDAAALLYSSGTT-GVSKGVILTHKNFIAASLMISAHQ-ELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMG 268 (342)
Q Consensus 191 ~~~~~~i~~TSGtT-G~pK~v~~t~~~l~~~~~~~~~~~-~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~ 268 (342)
++.++++....++. ...+...+|+.++...+..+.... ..+..++|++....+-.. .++..++.++..|+..+...
T Consensus 20 p~~~a~~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~g~~~gd~V~~~~~n~~--~~~~~~la~~~~G~~~v~l~ 97 (552)
T PRK09274 20 PDQLAVAVPGGRGADGKLAYDELSFAELDARSDAIAHGLNAAGIGRGMRAVLMVTPSL--EFFALTFALFKAGAVPVLVD 97 (552)
T ss_pred CCcceEEeccCCCCccccccCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCcH--HHHHHHHHHHHcCeEEEEcC
Confidence 45566554322221 122333678888887755543222 234567889888777644 34367899999999988774
Q ss_pred -CCCHHHHHHHHHhccceEEEecH
Q 019348 269 -KFDIEMALRAIEKYRVTVWWVVP 291 (342)
Q Consensus 269 -~~~~~~~~~~i~~~~~t~~~~~P 291 (342)
....+.+...+++.++..++..+
T Consensus 98 ~~~~~~~l~~~l~~~~~~~~i~~~ 121 (552)
T PRK09274 98 PGMGIKNLKQCLAEAQPDAFIGIP 121 (552)
T ss_pred CCccHHHHHHHHHhcCCCEEEecc
Confidence 46778888889999999888754
No 169
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=64.33 E-value=74 Score=25.56 Aligned_cols=89 Identities=13% Similarity=0.145 Sum_probs=55.3
Q ss_pred EEEEccch--hHHHHHHHHHHHHhhcCCeEEEc-cCCCHHHHHHHHHhccceEEEecHH------HHHHHHcCCCCCccC
Q 019348 237 VVLCVLPM--FHVFGLSVILYDQLQKGNCVVSM-GKFDIEMALRAIEKYRVTVWWVVPP------IILALAKNSLVRKFD 307 (342)
Q Consensus 237 ~~~~~~p~--~~~~g~~~~~~~~l~~G~~~v~~-~~~~~~~~~~~i~~~~~t~~~~~P~------~l~~l~~~~~~~~~~ 307 (342)
+++...+- .|..|.......--..|-.++.. ....++++.+.++++++.++.++-. .++.+.+...... .
T Consensus 86 ~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~vp~e~~v~~~~~~~pd~v~lS~~~~~~~~~~~~~i~~l~~~~-~ 164 (197)
T TIGR02370 86 KVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDVPIDTVVEKVKKEKPLMLTGSALMTTTMYGQKDINDKLKEEG-Y 164 (197)
T ss_pred eEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHHcCCCEEEEccccccCHHHHHHHHHHHHHcC-C
Confidence 44444444 88888755555555678888865 5567899999999999998776632 1233333221111 1
Q ss_pred CCCceEEEeecccCCHHHHH
Q 019348 308 ISSLKLVGSGAAPLGKELME 327 (342)
Q Consensus 308 l~~lr~~~~gG~~l~~~~~~ 327 (342)
.+.+ .+++||.++.++..+
T Consensus 165 ~~~v-~i~vGG~~~~~~~~~ 183 (197)
T TIGR02370 165 RDSV-KFMVGGAPVTQDWAD 183 (197)
T ss_pred CCCC-EEEEEChhcCHHHHH
Confidence 1234 388899898875444
No 170
>COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]
Probab=63.22 E-value=63 Score=31.19 Aligned_cols=100 Identities=25% Similarity=0.334 Sum_probs=74.9
Q ss_pred ccCCCceEEEeCCC-------CcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHH-HHHHHhCCeEecc
Q 019348 38 ASYSSKLALIDADS-------DESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICF-LGVIAIGAIASTA 109 (342)
Q Consensus 38 ~~~p~~~a~~~~~~-------~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~-lA~~~~G~~~v~l 109 (342)
...||.+|.+...+ |--+||+-+...+..+...+. -++++|+++-++|-..-+--++ .++...|.+.+..
T Consensus 187 ~~~~dDlatiiYTSGTTG~PKGVmLth~N~~~~v~~~~~~~~--~~~~~d~~LsfLPlaHi~Er~~~~~~~~~~g~~~~~ 264 (613)
T COG1022 187 PPKPDDLATIIYTSGTTGTPKGVMLTHRNLLAQVAGIDEVLP--PIGPGDRVLSFLPLAHIFERAFEGGLALYGGVTVLF 264 (613)
T ss_pred CCCccceEEEEEcCCCCCCCceEEEehHHHHHHHHHHHhhCC--CCCCCcEEEEeCcHHHHHHHHHHHHHHhhcceEEEe
Confidence 45678888764332 267999999999988888775 4789999999999776555554 6666666665544
Q ss_pred CCCCCHHHHHHHhhhcCceEEEEcccchhhhh
Q 019348 110 NPVYTVSELSKQVKDSNPKLVITVPELWDKVK 141 (342)
Q Consensus 110 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 141 (342)
..+...+..-+...+|.+++.-+..++.+.
T Consensus 265 --~~~~~~~~~dl~~~rPt~m~~VPRvwE~i~ 294 (613)
T COG1022 265 --KEDPRTLLEDLKEVRPTVMIGVPRVWEKVY 294 (613)
T ss_pred --cCCHHHHHHHHHHhCCeEEeechHHHHHHH
Confidence 345678889999999999999887776654
No 171
>PRK07638 acyl-CoA synthetase; Validated
Probab=63.00 E-value=56 Score=30.24 Aligned_cols=86 Identities=12% Similarity=0.142 Sum_probs=61.3
Q ss_pred cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCh-HHHHHHHHHHhCCeEeccCCCCCHHHHHHHhhhcCceEEE
Q 019348 53 ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIH-FPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVI 131 (342)
Q Consensus 53 ~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~-~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi 131 (342)
-.+|.+.+...+...+ ...+++.+|++....+-... ++...+..+..|+..+.. +...++++...+++.++.++.
T Consensus 161 v~~s~~~~~~~~~~~~---~~~~~~~~d~~~~~~~l~~~~~l~~~~~~l~~g~~~~~~-~~~~~~~~~~~i~~~~~t~~~ 236 (487)
T PRK07638 161 FLRAQQSWLHSFDCNV---HDFHMKREDSVLIAGTLVHSLFLYGAISTLYVGQTVHLM-RKFIPNQVLDKLETENISVMY 236 (487)
T ss_pred EEEecHHHHHHHHHHH---HhcCcCCCCEEEEeecchHHHHHHHHHHHHccCcEEEEc-CCCCHHHHHHHHHHcCCeEEE
Confidence 4667777665554443 34477889998877655433 345566778889887755 567788899999999999999
Q ss_pred Ecccchhhhhc
Q 019348 132 TVPELWDKVKD 142 (342)
Q Consensus 132 ~~~~~~~~~~~ 142 (342)
..+.....+..
T Consensus 237 ~~P~~~~~l~~ 247 (487)
T PRK07638 237 TVPTMLESLYK 247 (487)
T ss_pred eCcHHHHHHHh
Confidence 98877665543
No 172
>PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional
Probab=62.63 E-value=72 Score=29.41 Aligned_cols=97 Identities=11% Similarity=0.142 Sum_probs=66.1
Q ss_pred CCceEEEeCC---CC----cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChH-HHHHHHHHHhCCeEeccCCC
Q 019348 41 SSKLALIDAD---SD----ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHF-PICFLGVIAIGAIASTANPV 112 (342)
Q Consensus 41 p~~~a~~~~~---~~----~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~-~~~~lA~~~~G~~~v~l~~~ 112 (342)
++.++++... ++ -.+|++.+...+.... ...++.++|++....|-.... +..+++.+..|+..+..+ .
T Consensus 140 ~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~---~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~-~ 215 (483)
T PRK03640 140 LDEVATIMYTSGTTGKPKGVIQTYGNHWWSAVGSA---LNLGLTEDDCWLAAVPIFHISGLSILMRSVIYGMRVVLVE-K 215 (483)
T ss_pred CCCeEEEEeCCCcCCCCcEEEEecHHHHHHHHHHH---HhcCCCcCcEEEEecCHHHHHHHHHHHHHHhcCCEEEecC-C
Confidence 4566665332 22 3678887765443333 235888999998888754322 334577778888877665 5
Q ss_pred CCHHHHHHHhhhcCceEEEEcccchhhhh
Q 019348 113 YTVSELSKQVKDSNPKLVITVPELWDKVK 141 (342)
Q Consensus 113 ~~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 141 (342)
....++.+.+++.++.++...+.....+.
T Consensus 216 ~~~~~~~~~i~~~~~t~l~~~P~~~~~l~ 244 (483)
T PRK03640 216 FDAEKINKLLQTGGVTIISVVSTMLQRLL 244 (483)
T ss_pred CCHHHHHHHHHHhCCcEEEeHHHHHHHHH
Confidence 67889999999999999999887666543
No 173
>TIGR02262 benz_CoA_lig benzoate-CoA ligase family. Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases.
Probab=62.32 E-value=74 Score=29.66 Aligned_cols=97 Identities=18% Similarity=0.125 Sum_probs=65.9
Q ss_pred CCceEEEeCCCC-------cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCh--HHHHHHHHHHhCCeEeccCC
Q 019348 41 SSKLALIDADSD-------ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIH--FPICFLGVIAIGAIASTANP 111 (342)
Q Consensus 41 p~~~a~~~~~~~-------~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~--~~~~~lA~~~~G~~~v~l~~ 111 (342)
++.++++...++ -.+|++.+...+.... ....+++++|++....+-... +...+++.+..|+..+..+.
T Consensus 160 ~~~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~--~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~ 237 (508)
T TIGR02262 160 ADDPAFWLYSSGSTGMPKGVVHTHSNPYWTAELYA--RNTLGIREDDVVFSAAKLFFAYGLGNALTFPMSVGATTVLMGE 237 (508)
T ss_pred CCCcEEEEeCCCCCCCCcEEEEechhHHHHHHHHh--HHhcCCCCCCEEEEcCchHHHHHHHHHHHHHHHcCceEEEeCC
Confidence 566666543222 4677777766543321 234478999988877765543 33445667888988877776
Q ss_pred CCCHHHHHHHhhhcCceEEEEcccchhh
Q 019348 112 VYTVSELSKQVKDSNPKLVITVPELWDK 139 (342)
Q Consensus 112 ~~~~~~l~~~l~~~~~~~vi~~~~~~~~ 139 (342)
......+...+++.++.++...+.....
T Consensus 238 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~ 265 (508)
T TIGR02262 238 RPTPDAVFDRLRRHQPTIFYGVPTLYAA 265 (508)
T ss_pred CCCHHHHHHHHHHHCCcEEecchHHHHH
Confidence 6678889999999999999988765543
No 174
>PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed
Probab=62.31 E-value=1e+02 Score=29.08 Aligned_cols=97 Identities=10% Similarity=0.232 Sum_probs=66.1
Q ss_pred CCCceEEEeCC---CC----cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCh--HHHHHHHHHHhCCeEeccC
Q 019348 40 YSSKLALIDAD---SD----ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIH--FPICFLGVIAIGAIASTAN 110 (342)
Q Consensus 40 ~p~~~a~~~~~---~~----~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~--~~~~~lA~~~~G~~~v~l~ 110 (342)
.++.++++-.. ++ -.+|++.+...+.... ...+++++|++....+-+.. ++..+++.+..|+..+..+
T Consensus 195 ~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~---~~~~~~~~~~~l~~~p~~h~~g~~~~~~~~l~~G~~~~~~~ 271 (547)
T PRK13295 195 GPDDVTQLIYTSGTTGEPKGVMHTANTLMANIVPYA---ERLGLGADDVILMASPMAHQTGFMYGLMMPVMLGATAVLQD 271 (547)
T ss_pred CCcceeEEEeCCCCCCCCCEEEeccHHHHHHHHHHH---HHhCCCCCCeEEEecCchhhhhHHHHHHHHHHcCCeEEeCC
Confidence 34666665332 22 4667777765555433 44578889998887776533 3455778888999877654
Q ss_pred CCCCHHHHHHHhhhcCceEEEEcccchhhh
Q 019348 111 PVYTVSELSKQVKDSNPKLVITVPELWDKV 140 (342)
Q Consensus 111 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 140 (342)
....+.+...+++.++..++..+.....+
T Consensus 272 -~~~~~~~~~~l~~~~vt~~~~~p~~~~~l 300 (547)
T PRK13295 272 -IWDPARAAELIRTEGVTFTMASTPFLTDL 300 (547)
T ss_pred -CCCHHHHHHHHHHcCCcEEEecHHHHHHH
Confidence 56778899999999999988766655443
No 175
>PLN02574 4-coumarate--CoA ligase-like
Probab=61.77 E-value=1.1e+02 Score=29.10 Aligned_cols=100 Identities=19% Similarity=0.196 Sum_probs=68.1
Q ss_pred CCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhc--cccCCCeEEEEccchhHHHHHHHHHHHHhhcCCeEEEc
Q 019348 190 KQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQE--LVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSM 267 (342)
Q Consensus 190 ~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~--~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~ 267 (342)
.++..+++. +.+|. .+|+..+...+..+..... .+..++|++....+-.. .+...++.++..|+..+..
T Consensus 52 ~~~~~a~~~---~~~~~----~~Ty~el~~~~~~lA~~L~~~~G~~~gd~V~i~~~n~~--~~~~~~la~~~~G~v~v~l 122 (560)
T PLN02574 52 HNGDTALID---SSTGF----SISYSELQPLVKSMAAGLYHVMGVRQGDVVLLLLPNSV--YFPVIFLAVLSLGGIVTTM 122 (560)
T ss_pred cCCCCEEEE---CCCCC----cccHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCcc--hHHHHHHHHHHhCeEEeCc
Confidence 345666664 22221 3677777766555433332 44678888888877543 3336678999999988877
Q ss_pred c-CCCHHHHHHHHHhccceEEEecHHHHHHHH
Q 019348 268 G-KFDIEMALRAIEKYRVTVWWVVPPIILALA 298 (342)
Q Consensus 268 ~-~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~ 298 (342)
. ......+...+++.++..++..+.....+.
T Consensus 123 ~p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 154 (560)
T PLN02574 123 NPSSSLGEIKKRVVDCSVGLAFTSPENVEKLS 154 (560)
T ss_pred CcccCHHHHHHHHHhcCCEEEEECHHHHHHHH
Confidence 4 467889999999999999988887665553
No 176
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
Probab=61.71 E-value=36 Score=31.55 Aligned_cols=56 Identities=18% Similarity=0.196 Sum_probs=43.1
Q ss_pred CCCeEEEEccchhHHHHHHHHHHHHhhcCCeEEEcc----CCCHHHHHHHHHhccceEEEecHHH
Q 019348 233 ELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMG----KFDIEMALRAIEKYRVTVWWVVPPI 293 (342)
Q Consensus 233 ~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~----~~~~~~~~~~i~~~~~t~~~~~P~~ 293 (342)
.++|.+++-.|-|+..-. ..-..|..++-.+ ..+++.+-+.++++++..++++|++
T Consensus 177 ~pGd~v~vE~PtY~~~~~-----~~~~~g~~~~~vp~d~~G~~~e~le~~~~~~~~k~~y~~P~~ 236 (459)
T COG1167 177 DPGDTVLVEDPTYPGALQ-----ALEALGARVIPVPVDEDGIDPEALEEALAQWKPKAVYVTPTF 236 (459)
T ss_pred CCCCEEEEcCCCcHHHHH-----HHHHcCCcEEecCCCCCCCCHHHHHHHHhhcCCcEEEECCCC
Confidence 578999999999885432 2234566666553 4689999999999999999999974
No 177
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional
Probab=61.24 E-value=1e+02 Score=26.02 Aligned_cols=78 Identities=10% Similarity=0.128 Sum_probs=49.4
Q ss_pred eHHHHHH-HHHHHHHHHHHcC-CCCCCEEEEECCCCChHHHHHHHHHHh------C--CeEeccCCCC---CHHHHHHHh
Q 019348 56 SFSQFKS-IVIKVSHSFRHLG-ITKKDVVLIFAPNSIHFPICFLGVIAI------G--AIASTANPVY---TVSELSKQV 122 (342)
Q Consensus 56 Ty~~l~~-~~~~la~~L~~~g-~~~g~~V~i~~~n~~~~~~~~lA~~~~------G--~~~v~l~~~~---~~~~l~~~l 122 (342)
++..+.+ ..+++.+.+.+.+ +.+|++|+|.+.-+.+.++.+..+... | ..++-++... ..+.+..+.
T Consensus 4 ~~~~~~~~~~~~v~~~i~~~~li~~~~kilVa~SGG~DS~~LL~ll~~l~~~~~~~~~l~av~vd~g~~~~~~~~~~~~~ 83 (258)
T PRK10696 4 EFNKLQKRLRRQVGQAIADFNMIEEGDRVMVCLSGGKDSYTLLDILLNLQKRAPINFELVAVNLDQKQPGFPEHVLPEYL 83 (258)
T ss_pred chhHHHHHHHHHHHHHHHHcCCCCCCCEEEEEecCCHHHHHHHHHHHHHHHhCCCCeEEEEEEecCCCCCCCHHHHHHHH
Confidence 3444444 3445666677765 478999999999999999887666443 2 3445555533 334456666
Q ss_pred hhcCceEEEEc
Q 019348 123 KDSNPKLVITV 133 (342)
Q Consensus 123 ~~~~~~~vi~~ 133 (342)
+..+....+.+
T Consensus 84 ~~lgI~~~v~~ 94 (258)
T PRK10696 84 ESLGVPYHIEE 94 (258)
T ss_pred HHhCCCEEEEE
Confidence 77776666554
No 178
>PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated
Probab=60.48 E-value=95 Score=30.66 Aligned_cols=96 Identities=14% Similarity=0.065 Sum_probs=64.3
Q ss_pred CCCceEEEeCC---CC----cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCC--ChHHHHHHHHHHhCCeEeccC
Q 019348 40 YSSKLALIDAD---SD----ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNS--IHFPICFLGVIAIGAIASTAN 110 (342)
Q Consensus 40 ~p~~~a~~~~~---~~----~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~--~~~~~~~lA~~~~G~~~v~l~ 110 (342)
.++.++++-.. ++ -.+|++.+...+..+.. ..++.++|++...+|-. ..+...+++.+..|+..+..+
T Consensus 363 ~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~---~~~~~~~d~~l~~~Pl~h~~g~~~~~~~~l~~G~~vv~~~ 439 (718)
T PRK08043 363 QPEDAALILFTSGSEGHPKGVVHSHKSLLANVEQIKT---IADFTPNDRFMSALPLFHSFGLTVGLFTPLLTGAEVFLYP 439 (718)
T ss_pred CCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHH---hhCCCccCeEEEcCcchhhhhhHHHHHHHHHcCCEEEEeC
Confidence 45677765332 22 47888888776655543 34788899988877753 234456778888999888665
Q ss_pred CCCCHHHHHHHhhhcCceEEEEcccchh
Q 019348 111 PVYTVSELSKQVKDSNPKLVITVPELWD 138 (342)
Q Consensus 111 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~ 138 (342)
.......+.+.+++.++.++...+....
T Consensus 440 ~~~~~~~~~~~i~~~~vt~~~~~p~~~~ 467 (718)
T PRK08043 440 SPLHYRIVPELVYDRNCTVLFGTSTFLG 467 (718)
T ss_pred CcccHHHHHHHHHhcCCeEEEchHHHHH
Confidence 4444556677788888888877655443
No 179
>PRK08314 long-chain-fatty-acid--CoA ligase; Validated
Probab=60.42 E-value=1e+02 Score=29.08 Aligned_cols=97 Identities=11% Similarity=0.027 Sum_probs=66.4
Q ss_pred CCCceEEEeCC---CC----cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCh--HHHHHHHHHHhCCeEeccC
Q 019348 40 YSSKLALIDAD---SD----ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIH--FPICFLGVIAIGAIASTAN 110 (342)
Q Consensus 40 ~p~~~a~~~~~---~~----~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~--~~~~~lA~~~~G~~~v~l~ 110 (342)
.++.+|++-.. ++ -.+|++.+...+...... .++.++|++....|-... +...+++.+..|+..+..+
T Consensus 188 ~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~---~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~i~~~~ 264 (546)
T PRK08314 188 GPDDLAVLPYTSGTTGVPKGCMHTHRTVMANAVGSVLW---SNSTPESVVLAVLPLFHVTGMVHSMNAPIYAGATVVLMP 264 (546)
T ss_pred CCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHh---hCCCCCceEEEEcCchHHHHHHHHHHHHHHcCCeEEecC
Confidence 45677766432 22 467888887665554433 366788988777665432 3455678899999888775
Q ss_pred CCCCHHHHHHHhhhcCceEEEEcccchhhh
Q 019348 111 PVYTVSELSKQVKDSNPKLVITVPELWDKV 140 (342)
Q Consensus 111 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 140 (342)
....+.+.+.+++.++.++...+.....+
T Consensus 265 -~~~~~~~~~~i~~~~~t~~~~~p~~~~~l 293 (546)
T PRK08314 265 -RWDREAAARLIERYRVTHWTNIPTMVVDF 293 (546)
T ss_pred -CCCHHHHHHHHHHhcCceecccHHHHHHH
Confidence 45677888999999999988777655443
No 180
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=60.13 E-value=12 Score=29.25 Aligned_cols=17 Identities=12% Similarity=0.020 Sum_probs=7.4
Q ss_pred cceEEEecHHHHHHHHc
Q 019348 283 RVTVWWVVPPIILALAK 299 (342)
Q Consensus 283 ~~t~~~~~P~~l~~l~~ 299 (342)
++-++...|..++.+.+
T Consensus 50 ~ifllG~~~~~~~~~~~ 66 (172)
T PF03808_consen 50 RIFLLGGSEEVLEKAAA 66 (172)
T ss_pred eEEEEeCCHHHHHHHHH
Confidence 34444444444444433
No 181
>PRK05620 long-chain-fatty-acid--CoA ligase; Validated
Probab=59.77 E-value=98 Score=29.49 Aligned_cols=99 Identities=17% Similarity=0.178 Sum_probs=64.6
Q ss_pred CCCceEEEeCC---CC----cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChH-HHHHHHHHHhCCeEeccCC
Q 019348 40 YSSKLALIDAD---SD----ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHF-PICFLGVIAIGAIASTANP 111 (342)
Q Consensus 40 ~p~~~a~~~~~---~~----~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~-~~~~lA~~~~G~~~v~l~~ 111 (342)
.|+.++++... ++ -.+|++.+...+..+. .....++..+|++...+|-...+ ....++.+..|+..+...+
T Consensus 179 ~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~-~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~l~~g~~~~~~~~ 257 (576)
T PRK05620 179 DETTAAAICYSTGTTGAPKGVVYSHRSLYLQSLSLR-TTDSLAVTHGESFLCCVPIYHVLSWGVPLAAFMSGTPLVFPGP 257 (576)
T ss_pred CccceeEEEECCCCCCCCceEEEEcHHHHHHHHHhh-hhhhcCCCCCCeEEEeCChHHhhhhHHHHHHHhcCceEEecCC
Confidence 34666665432 22 4677777754433321 12235778899888877655443 2345677778887776666
Q ss_pred CCCHHHHHHHhhhcCceEEEEcccchhh
Q 019348 112 VYTVSELSKQVKDSNPKLVITVPELWDK 139 (342)
Q Consensus 112 ~~~~~~l~~~l~~~~~~~vi~~~~~~~~ 139 (342)
....+.+.+.+++.++.+++..+.....
T Consensus 258 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~ 285 (576)
T PRK05620 258 DLSAPTLAKIIATAMPRVAHGVPTLWIQ 285 (576)
T ss_pred CCCHHHHHHHHHHhcCceeeecCHHHHH
Confidence 6788889999999999999887665543
No 182
>PRK05850 acyl-CoA synthetase; Validated
Probab=59.33 E-value=1.1e+02 Score=29.24 Aligned_cols=86 Identities=14% Similarity=0.107 Sum_probs=59.8
Q ss_pred hhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHHHHHHHHhhcCCeEEEccC----CCHHHHHHHHHhccce
Q 019348 210 VILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGK----FDIEMALRAIEKYRVT 285 (342)
Q Consensus 210 v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~i~~~~~t 285 (342)
..+|+..+...+..+.....-...++|++....+-.. .++..+++++..|+.++..+. .....+...++..++.
T Consensus 34 ~~lty~eL~~~v~~~A~~L~~~g~~gd~V~l~~~n~~--~~~~~~lA~~~~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~ 111 (578)
T PRK05850 34 ETLTWSQLYRRTLNVAEELRRHGSTGDRAVILAPQGL--EYIVAFLGALQAGLIAVPLSVPQGGAHDERVSAVLRDTSPS 111 (578)
T ss_pred eeecHHHHHHHHHHHHHHHHHhCCCCCEEEEEcCCcc--cHHHHHHHHHHcCceEEecCCCCccchHHHHHHHHHhcCCC
Confidence 3578888776654432222111246788887777543 444678999999999887753 3567888999999999
Q ss_pred EEEecHHHHHHH
Q 019348 286 VWWVVPPIILAL 297 (342)
Q Consensus 286 ~~~~~P~~l~~l 297 (342)
.++..+.....+
T Consensus 112 ~il~~~~~~~~~ 123 (578)
T PRK05850 112 VVLTTSAVVDDV 123 (578)
T ss_pred EEEEcHHHHHHH
Confidence 999988766554
No 183
>PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated
Probab=59.06 E-value=1.5e+02 Score=27.62 Aligned_cols=102 Identities=11% Similarity=-0.005 Sum_probs=67.5
Q ss_pred CCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhh-ccccCCCeEEEEccchhHHHHHHHHHHHHhhcCCeEEEc-
Q 019348 190 KQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQ-ELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSM- 267 (342)
Q Consensus 190 ~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~-~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~- 267 (342)
.++.++++.-.. .+.. -.+|+..+...+..+.... ..+..++|++....+-..- +...++.++..|+.++..
T Consensus 20 ~p~~~a~~~~~~--~~~~--~~~ty~~l~~~v~~la~~L~~~g~~~~~~v~i~~~n~~~--~~~~~la~~~~G~~~v~l~ 93 (517)
T PRK08008 20 YGHKTALIFESS--GGVV--RRYSYLELNEEINRTANLFYSLGIRKGDKVALHLDNCPE--FIFCWFGLAKIGAIMVPIN 93 (517)
T ss_pred CCCceEEEcccC--CCcc--ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHH--HHHHHHHHHHcCeEEEEcC
Confidence 456677654221 1111 2367777776655543221 2345677888887766553 336778999999988876
Q ss_pred cCCCHHHHHHHHHhccceEEEecHHHHHHH
Q 019348 268 GKFDIEMALRAIEKYRVTVWWVVPPIILAL 297 (342)
Q Consensus 268 ~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l 297 (342)
+...++.+...+++.++..++..+.....+
T Consensus 94 ~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~ 123 (517)
T PRK08008 94 ARLLREESAWILQNSQASLLVTSAQFYPMY 123 (517)
T ss_pred cccCHHHHHHHHHhcCceEEEEecchhHHH
Confidence 456889999999999999999988655433
No 184
>PLN02387 long-chain-fatty-acid-CoA ligase family protein
Probab=59.00 E-value=1.2e+02 Score=29.91 Aligned_cols=102 Identities=13% Similarity=0.023 Sum_probs=71.2
Q ss_pred hHhHHHHHHHhhhhhhhh-ccccCCCeEEEEccchhHHHHHHHHHHHHhhcCCeEEEc-cCCCHHHHHHHHHhccceEEE
Q 019348 211 ILTHKNFIAASLMISAHQ-ELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSM-GKFDIEMALRAIEKYRVTVWW 288 (342)
Q Consensus 211 ~~t~~~l~~~~~~~~~~~-~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~-~~~~~~~~~~~i~~~~~t~~~ 288 (342)
.+|++.+...+..+.... ..+..++|++....+-.. .++...++++..|+..+-. +.+.++.+...++..++.+++
T Consensus 106 ~~Ty~el~~~v~~lA~~L~~lG~~~gd~Vai~~~n~~--e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~li 183 (696)
T PLN02387 106 WITYGQVFERVCNFASGLVALGHNKEERVAIFADTRA--EWLIALQGCFRQNITVVTIYASLGEEALCHSLNETEVTTVI 183 (696)
T ss_pred EEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCH--HHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHccCCCEEE
Confidence 467887777655543222 334567888877776544 3336678899999988865 567889999999999999999
Q ss_pred ecHHHHHHHHcCCCCCccCCCCceEEEeec
Q 019348 289 VVPPIILALAKNSLVRKFDISSLKLVGSGA 318 (342)
Q Consensus 289 ~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG 318 (342)
+....+..+.... ..++.++.+++-+
T Consensus 184 ~~~~~~~~l~~~~----~~~~~l~~ii~~~ 209 (696)
T PLN02387 184 CDSKQLKKLIDIS----SQLETVKRVIYMD 209 (696)
T ss_pred ECHHHHHHHHHHh----hccCCceEEEEEC
Confidence 9988877776543 2345566666544
No 185
>COG4821 Uncharacterized protein containing SIS (Sugar ISomerase) phosphosugar binding domain [General function prediction only]
Probab=58.15 E-value=34 Score=27.41 Aligned_cols=55 Identities=18% Similarity=0.345 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHH-HHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeEeccCCCCCHHHHHHHhhhcCceEEEEccc
Q 019348 60 FKSIVIKVSHSF-RHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPE 135 (342)
Q Consensus 60 l~~~~~~la~~L-~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~ 135 (342)
..++.+-++..+ .+++++++|.+.++. || |..++|+ ++....+.-++++|.+..-
T Consensus 85 ~lErieg~~~~~l~~~~i~~~DVliviS-nS-------------GrNpvpi-------e~A~~~rekGa~vI~vTSl 140 (243)
T COG4821 85 YLERIEGYAKLFLHRLQIRPNDVLIVIS-NS-------------GRNPVPI-------EVAEYAREKGAKVIAVTSL 140 (243)
T ss_pred hhHhhhhHHHHHHHHhcCCCCCEEEEEe-CC-------------CCCCcch-------HHHHHHHhcCCeEEEEehh
Confidence 355666777666 677999999766654 43 5666666 5677788888888876543
No 186
>PRK07470 acyl-CoA synthetase; Validated
Probab=57.89 E-value=1.2e+02 Score=28.48 Aligned_cols=100 Identities=20% Similarity=0.175 Sum_probs=63.4
Q ss_pred CCceEEEeCCCC-------cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeEeccC-CC
Q 019348 41 SSKLALIDADSD-------ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTAN-PV 112 (342)
Q Consensus 41 p~~~a~~~~~~~-------~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~-~~ 112 (342)
++.++++...+| -.+|.+.+...+......+. .+..++|++....|-+..+-...+..+..|+..+.++ ..
T Consensus 162 ~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~-~~~~~~d~~l~~~p~~~~~~~~~~~~~~~g~~~~~~~~~~ 240 (528)
T PRK07470 162 HDDPCWFFFTSGTTGRPKAAVLTHGQMAFVITNHLADLM-PGTTEQDASLVVAPLSHGAGIHQLCQVARGAATVLLPSER 240 (528)
T ss_pred CCCeEEEEeCCCCCCCCcEEEEehhhHHHHHHHHHHHhc-cCCCcccEEEEeccchhHHHHHHHHHHhcCceEEEecccC
Confidence 456676643322 46777777543332221111 2567888888888876554444444455666555443 35
Q ss_pred CCHHHHHHHhhhcCceEEEEcccchhhhh
Q 019348 113 YTVSELSKQVKDSNPKLVITVPELWDKVK 141 (342)
Q Consensus 113 ~~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 141 (342)
.+.+++...+++.++.++...+.....+.
T Consensus 241 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~ 269 (528)
T PRK07470 241 FDPAEVWALVERHRVTNLFTVPTILKMLV 269 (528)
T ss_pred cCHHHHHHHHHhcCCeEEechHHHHHHHH
Confidence 67888999999999999999887776553
No 187
>TIGR01139 cysK cysteine synthase A. This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate.
Probab=57.86 E-value=1e+02 Score=26.52 Aligned_cols=91 Identities=14% Similarity=0.023 Sum_probs=56.6
Q ss_pred ceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcC-CCCCCEEEEECCCCChHHHHHHHHHHhCCeEeccCCCCCHHHHHHH
Q 019348 43 KLALIDADSDESLSFSQFKSIVIKVSHSFRHLG-ITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQ 121 (342)
Q Consensus 43 ~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g-~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~ 121 (342)
++.+.....+.+-|+++= .+..+.....+.| +.+|++| +....+-.-..+-+++.+.|.-+..+-|...+......
T Consensus 22 ~i~~K~E~~nptGS~K~R--~a~~~l~~a~~~g~~~~g~~v-v~aSsGN~g~alA~~a~~~Gl~~~i~vp~~~~~~k~~~ 98 (298)
T TIGR01139 22 NVFVKLEGRNPSGSVKDR--IALNMIWDAEKRGLLKPGKTI-VEPTSGNTGIALAMVAAARGYKLILTMPETMSIERRKL 98 (298)
T ss_pred eEEEEEcccCCCCcchHH--HHHHHHHHHHHcCCCCCCCEE-EEeCCChhHHHHHHHHHHcCCeEEEEeCCccCHHHHHH
Confidence 455555533344444431 2222233344555 4677766 55555666677777888899877666665555566888
Q ss_pred hhhcCceEEEEcccc
Q 019348 122 VKDSNPKLVITVPEL 136 (342)
Q Consensus 122 l~~~~~~~vi~~~~~ 136 (342)
++..++++++++...
T Consensus 99 ~~~~GA~v~~~~~~~ 113 (298)
T TIGR01139 99 LKAYGAELVLTPGAE 113 (298)
T ss_pred HHHcCCEEEEECCCC
Confidence 999999999998653
No 188
>PRK08279 long-chain-acyl-CoA synthetase; Validated
Probab=57.81 E-value=1.1e+02 Score=29.42 Aligned_cols=84 Identities=17% Similarity=0.188 Sum_probs=58.6
Q ss_pred cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChH--HHHHHHHHHhCCeEeccCCCCCHHHHHHHhhhcCceEE
Q 019348 53 ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHF--PICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLV 130 (342)
Q Consensus 53 ~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~--~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~v 130 (342)
-.+|.+.+...+..+... .++.++|++....|-...+ ...+++.+..|+..+. .+......+...+++.++.++
T Consensus 217 V~~sh~~l~~~~~~~~~~---~~l~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~-~~~~~~~~~~~~i~~~~~t~~ 292 (600)
T PRK08279 217 AVMSHMRWLKAMGGFGGL---LRLTPDDVLYCCLPLYHNTGGTVAWSSVLAAGATLAL-RRKFSASRFWDDVRRYRATAF 292 (600)
T ss_pred EEEeHHHHHHHHHHHHHh---cCCCCCcEEEEecCchhhhhHHHHHHHHHhcCcEEEE-cCCCCHHHHHHHHHHhcceEE
Confidence 468888888776665544 5778899998888765433 3345566666766654 456677788888899999988
Q ss_pred EEcccchhhh
Q 019348 131 ITVPELWDKV 140 (342)
Q Consensus 131 i~~~~~~~~~ 140 (342)
...+.....+
T Consensus 293 ~~~p~l~~~l 302 (600)
T PRK08279 293 QYIGELCRYL 302 (600)
T ss_pred eehHHHHHHH
Confidence 8766554443
No 189
>PF02729 OTCace_N: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; InterPro: IPR006132 This entry contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and may also play a role in trimerization of the molecules []. The carboxyl-terminal, aspartate/ornithine-binding domain is is described by IPR006131 from INTERPRO. ; GO: 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 2P2G_D 2I6U_A 2YFK_B 3D6N_B 3SDS_A 3GD5_A 3R7L_B 3R7F_A 3R7D_A ....
Probab=57.43 E-value=81 Score=23.80 Aligned_cols=81 Identities=6% Similarity=0.020 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHc---CCCCCCEEEEEC-CCC-ChHHHHHHHHHHhCCeEeccCCCC-------CHHHHHHHhhhcC
Q 019348 59 QFKSIVIKVSHSFRHL---GITKKDVVLIFA-PNS-IHFPICFLGVIAIGAIASTANPVY-------TVSELSKQVKDSN 126 (342)
Q Consensus 59 ~l~~~~~~la~~L~~~---g~~~g~~V~i~~-~n~-~~~~~~~lA~~~~G~~~v~l~~~~-------~~~~l~~~l~~~~ 126 (342)
.|.+++..+-....+. ..-+|..|++++ .+| ..-.....|+.++|+.++.+++.. +.++...++...
T Consensus 16 ~ll~~A~~lk~~~~~~~~~~~l~gk~v~~lF~e~StRTR~SFe~A~~~LGg~~i~~~~~~s~~~k~Esl~Dtar~ls~~- 94 (142)
T PF02729_consen 16 ALLDLAKELKAAPKKGKPSQLLKGKTVALLFFEPSTRTRLSFEAAANRLGGHVIYLDPSTSSLGKGESLEDTARVLSRY- 94 (142)
T ss_dssp HHHHHHHHHHHHHHTTCCTTTTTTCEEEEEESS--HHHHHHHHHHHHHTTCEEEEEETTTSSTTTSSEHHHHHHHHHHH-
T ss_pred HHHHHHHHHHhhhhcCCCcccCCCCEEEEEecCCCchhhhhHHHhhhcceeEEEEECcccccCcCCCCHHHHHHHHHHh-
Confidence 3444555555555443 344577777666 444 456677889999999999988654 446677788888
Q ss_pred ceEEEEcccchhhh
Q 019348 127 PKLVITVPELWDKV 140 (342)
Q Consensus 127 ~~~vi~~~~~~~~~ 140 (342)
++++++-......+
T Consensus 95 ~D~iv~R~~~~~~~ 108 (142)
T PF02729_consen 95 VDAIVIRHPSHGAL 108 (142)
T ss_dssp CSEEEEEESSHHHH
T ss_pred hheEEEEeccchHH
Confidence 78877754433333
No 190
>PRK10946 entE enterobactin synthase subunit E; Provisional
Probab=56.59 E-value=1.2e+02 Score=28.57 Aligned_cols=97 Identities=14% Similarity=0.153 Sum_probs=66.1
Q ss_pred CCCceEEEeCC---CC----cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHH---HHHHHHHhCCeEecc
Q 019348 40 YSSKLALIDAD---SD----ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPI---CFLGVIAIGAIASTA 109 (342)
Q Consensus 40 ~p~~~a~~~~~---~~----~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~---~~lA~~~~G~~~v~l 109 (342)
.++.++++... ++ -.+|.+.+...+..... ..++.++|++...+|-...+-. ..++++..|+..+..
T Consensus 180 ~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~---~~~~~~~~~~l~~~p~~h~~~~~~~~~~~~l~~g~~~~~~ 256 (536)
T PRK10946 180 PADEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVE---ICGFTPQTRYLCALPAAHNYPMSSPGALGVFLAGGTVVLA 256 (536)
T ss_pred CCCCeEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHH---hcCCCCCceEEEecCccccccchhhhHHHHhhcCcEEEEC
Confidence 34666665332 22 46788888776665443 3477889998888776554332 467888889887765
Q ss_pred CCCCCHHHHHHHhhhcCceEEEEcccchhhh
Q 019348 110 NPVYTVSELSKQVKDSNPKLVITVPELWDKV 140 (342)
Q Consensus 110 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 140 (342)
. ..........+++.++.++...+.....+
T Consensus 257 ~-~~~~~~~~~~l~~~~~t~~~~~p~~~~~l 286 (536)
T PRK10946 257 P-DPSATLCFPLIEKHQVNVTALVPPAVSLW 286 (536)
T ss_pred C-CCCHHHHHHHHHHhCCcEEEeChHHHHHH
Confidence 4 44566778889999999998877665544
No 191
>PLN03052 acetate--CoA ligase; Provisional
Probab=56.37 E-value=1.2e+02 Score=30.18 Aligned_cols=100 Identities=13% Similarity=0.105 Sum_probs=68.9
Q ss_pred CCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhh-ccccCCCeEEEEccchhHHHHHHHHHHHHhhcCCeEEEc-
Q 019348 190 KQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQ-ELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSM- 267 (342)
Q Consensus 190 ~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~-~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~- 267 (342)
.++.++++.-..+..|.+ ...+|...|...+..+.... ..+..++|++...+|..-- .+..+++++..|+..+..
T Consensus 188 ~pd~~Ai~~~~e~~~~~~-~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrVai~~pn~~e--~via~LA~~~~Gav~vpi~ 264 (728)
T PLN03052 188 TDDSIAIIWRDEGSDDLP-VNRMTLSELRSQVSRVANALDALGFEKGDAIAIDMPMNVH--AVIIYLAIILAGCVVVSIA 264 (728)
T ss_pred CCCCeEEEEECCCCCCCc-eEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHH--HHHHHHHHHHcCCEEEeeC
Confidence 356777665333221211 13478888877755543222 2346789999998887543 336788999999987776
Q ss_pred cCCCHHHHHHHHHhccceEEEecHH
Q 019348 268 GKFDIEMALRAIEKYRVTVWWVVPP 292 (342)
Q Consensus 268 ~~~~~~~~~~~i~~~~~t~~~~~P~ 292 (342)
+.+.++.+...+++.++.++++...
T Consensus 265 p~~~~~~l~~rl~~~~~k~lit~d~ 289 (728)
T PLN03052 265 DSFAPSEIATRLKISKAKAIFTQDV 289 (728)
T ss_pred CCCCHHHHHHHHHhcCceEEEEcCc
Confidence 5678999999999999999988764
No 192
>PLN02246 4-coumarate--CoA ligase
Probab=55.91 E-value=1.3e+02 Score=28.36 Aligned_cols=98 Identities=11% Similarity=0.054 Sum_probs=65.2
Q ss_pred CCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhh-ccccCCCeEEEEccchhHHHHHHHHHHHHhhcCCeEEEcc
Q 019348 190 KQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQ-ELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMG 268 (342)
Q Consensus 190 ~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~-~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~ 268 (342)
.++.++++... +| ..+|+..+...+..+.... ..+..++|++....+-.. .+...++.++..|+..+..+
T Consensus 36 ~~~~~a~~~~~---~~----~~~ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~~~~--~~~~~~la~~~~G~~~v~l~ 106 (537)
T PLN02246 36 FSDRPCLIDGA---TG----RVYTYADVELLSRRVAAGLHKLGIRQGDVVMLLLPNCP--EFVLAFLGASRRGAVTTTAN 106 (537)
T ss_pred CCCCeEEEecC---CC----ceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCh--HHHHHHHHHHHcCEEEecCC
Confidence 35666665321 12 2478888877655543221 234567888887765543 44467888999999888764
Q ss_pred -CCCHHHHHHHHHhccceEEEecHHHHHH
Q 019348 269 -KFDIEMALRAIEKYRVTVWWVVPPIILA 296 (342)
Q Consensus 269 -~~~~~~~~~~i~~~~~t~~~~~P~~l~~ 296 (342)
......+...++..++..++........
T Consensus 107 ~~~~~~~l~~~l~~~~~~~li~~~~~~~~ 135 (537)
T PLN02246 107 PFYTPAEIAKQAKASGAKLIITQSCYVDK 135 (537)
T ss_pred CCCCHHHHHHHHHhcCCcEEEEccchHHH
Confidence 4678889999999999988887655443
No 193
>TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB.
Probab=55.83 E-value=1.3e+02 Score=28.22 Aligned_cols=97 Identities=15% Similarity=0.167 Sum_probs=65.5
Q ss_pred CCCceEEEeCC---CC----cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHH---HHHHHHHhCCeEecc
Q 019348 40 YSSKLALIDAD---SD----ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPI---CFLGVIAIGAIASTA 109 (342)
Q Consensus 40 ~p~~~a~~~~~---~~----~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~---~~lA~~~~G~~~v~l 109 (342)
.++.++++-.. ++ -.+|.+.+...+.... ...++.++|++....|-...+-. ..++++..|+..+..
T Consensus 181 ~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~---~~~~~~~~d~~l~~~P~~h~~~~~~~~~~~~l~~G~~~v~~ 257 (527)
T TIGR02275 181 KSDEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSV---EICWLTQQTRYLCALPAAHNYPLSSPGALGVFYAGGCVVLA 257 (527)
T ss_pred CCCccEEEEeCCCCCCCCceeeeehHHHHHHHHHHH---hhcCCCcCCEEEECCChHhhhhhhHHHHHHHHhcCCeEEEC
Confidence 45667765332 22 4678887766555433 34577889988887776543332 367788888887654
Q ss_pred CCCCCHHHHHHHhhhcCceEEEEcccchhhh
Q 019348 110 NPVYTVSELSKQVKDSNPKLVITVPELWDKV 140 (342)
Q Consensus 110 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 140 (342)
+...+..+...+++.++.++...+.....+
T Consensus 258 -~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l 287 (527)
T TIGR02275 258 -PDPSPTDCFPLIERHKVTVTALVPPAVALW 287 (527)
T ss_pred -CCCCHHHHHHHHHHhCCeEEEecHHHHHHH
Confidence 445677788899999999999887766543
No 194
>PLN02556 cysteine synthase/L-3-cyanoalanine synthase
Probab=55.77 E-value=92 Score=27.92 Aligned_cols=60 Identities=22% Similarity=0.085 Sum_probs=46.8
Q ss_pred CCCCCCEEEEECCCCChHHHHHHHHHHhCCeEeccCCCCCHHHHHHHhhhcCceEEEEcc
Q 019348 75 GITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVP 134 (342)
Q Consensus 75 g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~ 134 (342)
-+++|....|....+-.-....++|...|.-+..+-|.....+....++..++++++++.
T Consensus 106 ~i~pG~~~vV~aSsGN~G~alA~~a~~~G~~~~ivvp~~~~~~k~~~lr~~GA~Vi~~~~ 165 (368)
T PLN02556 106 LITPGKTTLIEPTSGNMGISLAFMAAMKGYKMILTMPSYTSLERRVTMRAFGAELVLTDP 165 (368)
T ss_pred CcCCCCCEEEEeCCchHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECC
Confidence 357785555556677777788888899998777776766667778999999999999974
No 195
>KOG1176 consensus Acyl-CoA synthetase [Lipid transport and metabolism]
Probab=55.66 E-value=56 Score=30.99 Aligned_cols=91 Identities=11% Similarity=0.074 Sum_probs=69.3
Q ss_pred hhhHhHHHHHHHhhhhhhhhc---cccCCCeEEEEccchhHHHHHHHHHHHHhhcCCeEEEc-cCCCHHHHHHHHHhccc
Q 019348 209 GVILTHKNFIAASLMISAHQE---LVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSM-GKFDIEMALRAIEKYRV 284 (342)
Q Consensus 209 ~v~~t~~~l~~~~~~~~~~~~---~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~-~~~~~~~~~~~i~~~~~ 284 (342)
|..+|++.+...+..++.... .+..++|++....|-..-+. ...++++..|+.+.-. +.++...+...++.-++
T Consensus 43 g~~~T~~e~~~~~~r~A~~L~~~~~~i~~gDvV~i~~pNs~~~~--~~~la~~~~Ga~~~~~Np~~~~~ei~~~~~~s~~ 120 (537)
T KOG1176|consen 43 GRELTYSELHDRCRRLASALSELGLGIKKGDVVGILAPNTPEFV--ELALAVPMAGAVLNPLNPRLTASEIAKQLKDSKP 120 (537)
T ss_pred CcEEcHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEEcCCCHHHH--HHHHHHHHcCccccccCcccCHHHHHHHHHhcCC
Confidence 677888888877655443332 22567999999998866443 5678889999988776 45799999999999999
Q ss_pred eEEEecHHHHHHHHcCC
Q 019348 285 TVWWVVPPIILALAKNS 301 (342)
Q Consensus 285 t~~~~~P~~l~~l~~~~ 301 (342)
.++++....+..+.+..
T Consensus 121 kiif~d~~~~~~i~~~~ 137 (537)
T KOG1176|consen 121 KLIFVDEDFYDKISEAT 137 (537)
T ss_pred eEEEEcCchHHHHHHHH
Confidence 99999988887775443
No 196
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=55.00 E-value=1.3e+02 Score=26.14 Aligned_cols=62 Identities=13% Similarity=0.048 Sum_probs=48.2
Q ss_pred HHcC-CCCCCEEEEECCCCChHHHHHHHHHHhCCeEeccCCCCCHHHHHHHhhhcCceEEEEcc
Q 019348 72 RHLG-ITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVP 134 (342)
Q Consensus 72 ~~~g-~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~ 134 (342)
.+.| +++|+ ..|=...+-.-+...+.|...|.-++.+=|.....+...+|+.+++.+++++.
T Consensus 54 e~~G~l~pG~-tIVE~TSGNTGI~LA~vaa~~Gy~~iivmP~~~S~er~~~l~a~GAevi~t~~ 116 (300)
T COG0031 54 EKRGLLKPGG-TIVEATSGNTGIALAMVAAAKGYRLIIVMPETMSQERRKLLRALGAEVILTPG 116 (300)
T ss_pred HHcCCCCCCC-EEEEcCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEcCC
Confidence 3444 78888 45556666677777888888898777776766667789999999999999986
No 197
>PLN03013 cysteine synthase
Probab=54.49 E-value=1e+02 Score=28.28 Aligned_cols=81 Identities=17% Similarity=0.051 Sum_probs=55.0
Q ss_pred cceeHHHHHHHHHHHHHHHHHcC-CCCCCEEEEECCCCChHHHHHHHHHHhCCeEeccCCCCCHHHHHHHhhhcCceEEE
Q 019348 53 ESLSFSQFKSIVIKVSHSFRHLG-ITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVI 131 (342)
Q Consensus 53 ~~~Ty~~l~~~~~~la~~L~~~g-~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi 131 (342)
-+-|+++ +-+..+-..+.+.| +++|....|....+-.-+..-++|...|.-++.+=|...+.+....++..++++++
T Consensus 149 PtGSfKd--R~A~~~l~~a~~~G~l~pG~~~VVeaSSGN~G~ALA~~a~~~G~~~~VvvP~~~s~~K~~~ira~GAeVi~ 226 (429)
T PLN03013 149 PCCSVKD--RIGYSMVTDAEQKGFISPGKSVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMERRVLLKAFGAELVL 226 (429)
T ss_pred CccccHH--HHHHHHHHHHHHcCCcCCCCcEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHcCCEEEE
Confidence 3444544 22333333344455 47786556666777777788888888998766665666677788899999999999
Q ss_pred Eccc
Q 019348 132 TVPE 135 (342)
Q Consensus 132 ~~~~ 135 (342)
+++.
T Consensus 227 v~~~ 230 (429)
T PLN03013 227 TDPA 230 (429)
T ss_pred ECCC
Confidence 9754
No 198
>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional
Probab=54.29 E-value=72 Score=28.63 Aligned_cols=62 Identities=16% Similarity=0.221 Sum_probs=39.3
Q ss_pred HHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeEeccCCC-----CCHHHHHHHhhhcCceEEE
Q 019348 66 KVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPV-----YTVSELSKQVKDSNPKLVI 131 (342)
Q Consensus 66 ~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~-----~~~~~l~~~l~~~~~~~vi 131 (342)
.+...|...++++||.|++.. ..+.....++...|+.++.++.. ...+++...+.. +.++|+
T Consensus 60 al~lal~al~~~~Gd~Viv~~---~~~~~~~~~~~~~G~~~v~vd~~~~~~~~d~~~l~~~i~~-~tkav~ 126 (379)
T PRK11658 60 GMHITLMALGIGPGDEVITPS---LTWVSTLNMIVLLGATPVMVDVDRDTLMVTPEAIEAAITP-RTKAII 126 (379)
T ss_pred HHHHHHHHcCCCCCCEEEECC---CcHHHHHHHHHHcCCEEEEEecCCCcCCcCHHHHHHhccc-CCeEEE
Confidence 344455566788999877643 34555566777889888776532 355677776653 556665
No 199
>PRK05857 acyl-CoA synthetase; Validated
Probab=54.27 E-value=1.2e+02 Score=28.70 Aligned_cols=95 Identities=14% Similarity=0.001 Sum_probs=64.8
Q ss_pred CCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhh-ccccCCCeEEEEccchhHHHHHHHHHHHHhhcCCeEEEcc
Q 019348 190 KQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQ-ELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMG 268 (342)
Q Consensus 190 ~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~-~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~ 268 (342)
.++.++++... | ...+|+..+...+..+.... ..+..+++++....+-...+ +..+++++..|+..+..+
T Consensus 27 ~p~~~a~~~~~-~------~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~e~--~~~~lA~~~~G~v~v~l~ 97 (540)
T PRK05857 27 QPEAIALRRCD-G------TSALRYRELVAEVGGLAADLRAQSVSRGSRVLVISDNGPET--YLSVLACAKLGAIAVMAD 97 (540)
T ss_pred CCCcEEEeecC-C------CceeeHHHHHHHHHHHHHHHHHhCcCCCCEEEEEcCCCHHH--HHHHHHHHHcCeEEEecC
Confidence 45677665432 2 13478888877655543222 22356788888877665533 367899999999988774
Q ss_pred -CCCHHHHHHHHHhccceEEEecHHH
Q 019348 269 -KFDIEMALRAIEKYRVTVWWVVPPI 293 (342)
Q Consensus 269 -~~~~~~~~~~i~~~~~t~~~~~P~~ 293 (342)
.+..+.+...++..++..++..+..
T Consensus 98 ~~~~~~~l~~~~~~~~~~~ii~~~~~ 123 (540)
T PRK05857 98 GNLPIAAIERFCQITDPAAALVAPGS 123 (540)
T ss_pred ccCCHHHHHHHHHhcCCceEEEeccc
Confidence 4678888889998998888877653
No 200
>PLN03102 acyl-activating enzyme; Provisional
Probab=54.22 E-value=81 Score=30.12 Aligned_cols=83 Identities=11% Similarity=0.083 Sum_probs=60.3
Q ss_pred hHhHHHHHHHhhhhhhhh-ccccCCCeEEEEccchhHHHHHHHHHHHHhhcCCeEEEc-cCCCHHHHHHHHHhccceEEE
Q 019348 211 ILTHKNFIAASLMISAHQ-ELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSM-GKFDIEMALRAIEKYRVTVWW 288 (342)
Q Consensus 211 ~~t~~~l~~~~~~~~~~~-~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~-~~~~~~~~~~~i~~~~~t~~~ 288 (342)
.+|.+.+...+..+.... ..++.++|++....|-.- .+...+++++..|+.++.. +...++.+...++..++..++
T Consensus 39 ~~Ty~eL~~~~~~~a~~L~~~Gl~~gd~Vai~~~n~~--e~~~~~la~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii 116 (579)
T PLN03102 39 RFTWPQTYDRCCRLAASLISLNITKNDVVSVLAPNTP--AMYEMHFAVPMAGAVLNPINTRLDATSIAAILRHAKPKILF 116 (579)
T ss_pred EEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcH--HHHHHHHHHHhcCcEEeeccccCCHHHHHHHHhccCCeEEE
Confidence 478888777655433222 234678899888887544 4436688999999988876 456889999999999999999
Q ss_pred ecHHHHH
Q 019348 289 VVPPIIL 295 (342)
Q Consensus 289 ~~P~~l~ 295 (342)
+.+....
T Consensus 117 ~~~~~~~ 123 (579)
T PLN03102 117 VDRSFEP 123 (579)
T ss_pred EChhhHH
Confidence 8775543
No 201
>PRK07529 AMP-binding domain protein; Validated
Probab=53.97 E-value=1e+02 Score=29.82 Aligned_cols=98 Identities=12% Similarity=0.033 Sum_probs=63.7
Q ss_pred CCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhh-ccccCCCeEEEEccchhHHHHHHHHHHHHhhcCCeEEEcc
Q 019348 190 KQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQ-ELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMG 268 (342)
Q Consensus 190 ~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~-~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~ 268 (342)
.++.++++....+.. ..+...+|++.+...+..+.... ..+..++|++...+|-..- ++..++.++..|..+.+-+
T Consensus 38 ~p~~~Al~~~~~~~~-~~~~~~~Ty~eL~~~v~~~A~~L~~~Gi~~gd~V~i~~~n~~e--~~~~~lA~~~~Gi~~pi~~ 114 (632)
T PRK07529 38 HPDAPALSFLLDADP-LDRPETWTYAELLADVTRTANLLHSLGVGPGDVVAFLLPNLPE--THFALWGGEAAGIANPINP 114 (632)
T ss_pred CCCCceEEeecccCC-CCCCceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHH--HHHHHHHHHHhCEEEeCCC
Confidence 456666655432211 12345678888877655533221 2346688998888876543 3366788888885433335
Q ss_pred CCCHHHHHHHHHhccceEEEec
Q 019348 269 KFDIEMALRAIEKYRVTVWWVV 290 (342)
Q Consensus 269 ~~~~~~~~~~i~~~~~t~~~~~ 290 (342)
...++.+...+++.++..+++.
T Consensus 115 ~~~~~~i~~~l~~~~~~~li~~ 136 (632)
T PRK07529 115 LLEPEQIAELLRAAGAKVLVTL 136 (632)
T ss_pred cCCHHHHHHHHHhcCCcEEEEe
Confidence 6788999999999999998885
No 202
>PRK05677 long-chain-fatty-acid--CoA ligase; Validated
Probab=53.97 E-value=1.3e+02 Score=28.65 Aligned_cols=83 Identities=12% Similarity=0.075 Sum_probs=60.7
Q ss_pred hHhHHHHHHHhhhhhhhhc--cccCCCeEEEEccchhHHHHHHHHHHHHhhcCCeEEEcc-CCCHHHHHHHHHhccceEE
Q 019348 211 ILTHKNFIAASLMISAHQE--LVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMG-KFDIEMALRAIEKYRVTVW 287 (342)
Q Consensus 211 ~~t~~~l~~~~~~~~~~~~--~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~~ 287 (342)
.+|+..+...+..+..... .+...+|++...++-... +...++.++..|+..+..+ .+..+.+...+++.++..+
T Consensus 49 ~~Ty~el~~~~~~la~~L~~~~gi~~gd~Vai~~~n~~~--~~~~~la~~~~Ga~~v~l~~~~~~~~l~~~l~~~~~~~i 126 (562)
T PRK05677 49 TLTYGELYKLSGAFAAWLQQHTDLKPGDRIAVQLPNVLQ--YPVAVFGAMRAGLIVVNTNPLYTAREMEHQFNDSGAKAL 126 (562)
T ss_pred eeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHH--HHHHHHHHHHcCeEEeecCCCCCHHHHHHHHhccCceEE
Confidence 4788888877666543332 356788988888776543 3366889999999888764 4678899999999999998
Q ss_pred EecHHHHH
Q 019348 288 WVVPPIIL 295 (342)
Q Consensus 288 ~~~P~~l~ 295 (342)
+.......
T Consensus 127 i~~~~~~~ 134 (562)
T PRK05677 127 VCLANMAH 134 (562)
T ss_pred EEecchhh
Confidence 87665443
No 203
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=52.28 E-value=32 Score=24.58 Aligned_cols=40 Identities=20% Similarity=0.365 Sum_probs=30.9
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCC
Q 019348 65 IKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGA 104 (342)
Q Consensus 65 ~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~ 104 (342)
..+...+.+.|+.+++.|.++|..+.....+...+..+|.
T Consensus 64 ~~~~~~~~~~~~~~~~~iv~yc~~g~~s~~~~~~l~~~G~ 103 (118)
T cd01449 64 EELRALFAALGITPDKPVIVYCGSGVTACVLLLALELLGY 103 (118)
T ss_pred HHHHHHHHHcCCCCCCCEEEECCcHHHHHHHHHHHHHcCC
Confidence 3456667788888899999999888776777777777775
No 204
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=51.51 E-value=1.6e+02 Score=30.82 Aligned_cols=100 Identities=14% Similarity=0.029 Sum_probs=69.7
Q ss_pred CCCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHHHHHHHHhhcCCeEEEcc
Q 019348 189 VKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMG 268 (342)
Q Consensus 189 ~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~ 268 (342)
..++.++++.. .| -.+|++.+...+..+.....-...++|++....|-... ....++.++..|+..+..+
T Consensus 627 ~~p~~~a~~~~-~~-------~~~Ty~el~~~~~~~a~~L~~~~~~g~~V~i~~~n~~~--~~~~~la~~~~G~v~v~l~ 696 (1146)
T PRK08633 627 RNWSRLAVADS-TG-------GELSYGKALTGALALARLLKRELKDEENVGILLPPSVA--GALANLALLLAGKVPVNLN 696 (1146)
T ss_pred hcCCCcEEEcC-CC-------CcCcHHHHHHHHHHHHHHHHHhCCCCCeEEEECCCchH--HHHHHHHHHHcCCEEEEeC
Confidence 35677777532 12 14688887776555433322224678888887776553 3366889999999877664
Q ss_pred -CCCHHHHHHHHHhccceEEEecHHHHHHHH
Q 019348 269 -KFDIEMALRAIEKYRVTVWWVVPPIILALA 298 (342)
Q Consensus 269 -~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~ 298 (342)
...++++...+++.+++.+...+.....+.
T Consensus 697 ~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~ 727 (1146)
T PRK08633 697 YTASEAALKSAIEQAQIKTVITSRKFLEKLK 727 (1146)
T ss_pred CCcCHHHHHHHHHHcCCCEEEEcHHHHHHHh
Confidence 467899999999999999999988777664
No 205
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=51.34 E-value=39 Score=23.52 Aligned_cols=51 Identities=6% Similarity=0.108 Sum_probs=35.8
Q ss_pred ceeHHHHHHH----HHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCC
Q 019348 54 SLSFSQFKSI----VIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGA 104 (342)
Q Consensus 54 ~~Ty~~l~~~----~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~ 104 (342)
.+.+.++.+. ...+...+...+..+++.|.++|.++.....+...+...|.
T Consensus 37 ~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~c~~g~~s~~~~~~l~~~G~ 91 (106)
T cd01519 37 NIPLSSLPDALALSEEEFEKKYGFPKPSKDKELIFYCKAGVRSKAAAELARSLGY 91 (106)
T ss_pred EechHHhhhhhCCCHHHHHHHhcccCCCCCCeEEEECCCcHHHHHHHHHHHHcCC
Confidence 4455555432 23456666667777888999999998777777777777886
No 206
>PRK08751 putative long-chain fatty acyl CoA ligase; Provisional
Probab=50.98 E-value=96 Score=29.35 Aligned_cols=95 Identities=15% Similarity=0.071 Sum_probs=65.5
Q ss_pred CCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhh--ccccCCCeEEEEccchhHHHHHHHHHHHHhhcCCeEEEc
Q 019348 190 KQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQ--ELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSM 267 (342)
Q Consensus 190 ~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~--~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~ 267 (342)
.++.++++.. | -.+|+..+...+..+.... ..+...+|++....|-.. .+...++.++..|+..+..
T Consensus 38 ~~~~~a~~~~--~-------~~~Ty~el~~~~~~la~~L~~~~g~~~g~~V~i~~~~~~--~~~~~~lA~~~~G~~~v~l 106 (560)
T PRK08751 38 FADRPAYHSF--G-------KTITYREADQLVEQFAAYLLGELQLKKGDRVALMMPNCL--QYPIATFGVLRAGLTVVNV 106 (560)
T ss_pred CCCCceEEEC--C-------ceeeHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCH--HHHHHHHHHHHhCeEEecc
Confidence 3556676542 2 2468888877655544332 245667888887776654 3336688999999998866
Q ss_pred -cCCCHHHHHHHHHhccceEEEecHHHHH
Q 019348 268 -GKFDIEMALRAIEKYRVTVWWVVPPIIL 295 (342)
Q Consensus 268 -~~~~~~~~~~~i~~~~~t~~~~~P~~l~ 295 (342)
+.+.+..+...+++.+++.++.......
T Consensus 107 ~p~~~~~~~~~~l~~~~~~~vi~~~~~~~ 135 (560)
T PRK08751 107 NPLYTPRELKHQLIDSGASVLVVIDNFGT 135 (560)
T ss_pred CccCCHHHHHHHHHhcCCeEEEEcchhHH
Confidence 5567889999999999999888765543
No 207
>PRK05852 acyl-CoA synthetase; Validated
Probab=50.78 E-value=1.5e+02 Score=27.84 Aligned_cols=86 Identities=13% Similarity=0.203 Sum_probs=59.8
Q ss_pred cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCC--hHHHHHHHHHHhCCeEec-cCCCCCHHHHHHHhhhcCceE
Q 019348 53 ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSI--HFPICFLGVIAIGAIAST-ANPVYTVSELSKQVKDSNPKL 129 (342)
Q Consensus 53 ~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~--~~~~~~lA~~~~G~~~v~-l~~~~~~~~l~~~l~~~~~~~ 129 (342)
-.+|++.+...+..+...+ +++++|++....|-.. .+...+++++..|...+. -........+...+++.++..
T Consensus 194 v~~~~~~~~~~~~~~~~~~---~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~i~~~~~t~ 270 (534)
T PRK05852 194 VPWTHANIASSVRAIITGY---RLSPRDATVAVMPLYHGHGLIAALLATLASGGAVLLPARGRFSAHTFWDDIKAVGATW 270 (534)
T ss_pred EEecHHHHHHHHHHHHHHh---CCCCcceEEEecCcchhHHHHHHHHHHHhcCCeEEeCCCcCcCHHHHHHHHHHcCCcE
Confidence 4578888876666555444 6788998887776554 344567777777776443 233456778888899999999
Q ss_pred EEEcccchhhhh
Q 019348 130 VITVPELWDKVK 141 (342)
Q Consensus 130 vi~~~~~~~~~~ 141 (342)
++..+.....+.
T Consensus 271 ~~~~P~~~~~l~ 282 (534)
T PRK05852 271 YTAVPTIHQILL 282 (534)
T ss_pred EEcChHHHHHHH
Confidence 998877665553
No 208
>PLN02620 indole-3-acetic acid-amido synthetase
Probab=50.43 E-value=12 Score=35.68 Aligned_cols=31 Identities=23% Similarity=0.193 Sum_probs=25.9
Q ss_pred CCCCCeEEEEcCCCCCC-CchhhhHhHHHHHH
Q 019348 189 VKQTDAAALLYSSGTTG-VSKGVILTHKNFIA 219 (342)
Q Consensus 189 ~~~~~~~~i~~TSGtTG-~pK~v~~t~~~l~~ 219 (342)
..++.+.+...|||||| ++|.+.+|...+..
T Consensus 98 L~~~pi~~F~~SSGTT~g~~K~IP~t~e~l~~ 129 (612)
T PLN02620 98 LCSKPISEFLTSSGTSGGERKLMPTIEEELGR 129 (612)
T ss_pred cCCCChhhhhhcCCCCCCceeeeecCHHHHHH
Confidence 44667788899999997 69999999987766
No 209
>PRK13388 acyl-CoA synthetase; Provisional
Probab=50.37 E-value=2.1e+02 Score=27.06 Aligned_cols=94 Identities=14% Similarity=0.109 Sum_probs=60.7
Q ss_pred CCCceEEEeCCC---C----cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCh--HHHHHHHHHHhCCeEeccC
Q 019348 40 YSSKLALIDADS---D----ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIH--FPICFLGVIAIGAIASTAN 110 (342)
Q Consensus 40 ~p~~~a~~~~~~---~----~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~--~~~~~lA~~~~G~~~v~l~ 110 (342)
.++.++++...+ + -.+|.+.+...+..+.. ..+++++|++....+-... +...+++.+..|+..+. .
T Consensus 148 ~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~~~~~~~~~~l~~G~~~v~-~ 223 (540)
T PRK13388 148 DAMDPFMLIFTSGTTGAPKAVRCSHGRLAFAGRALTE---RFGLTRDDVCYVSMPLFHSNAVMAGWAPAVASGAAVAL-P 223 (540)
T ss_pred CCCCeEEEEECCCCCCCCCEEEecHHHHHHHHHHHHH---HhCCCCCCEEEEeeCchhhcchHHHHHHHHHcCcEEEE-C
Confidence 356777664322 2 46788877665554443 4478899998887765432 22334456777776654 4
Q ss_pred CCCCHHHHHHHhhhcCceEEEEcccch
Q 019348 111 PVYTVSELSKQVKDSNPKLVITVPELW 137 (342)
Q Consensus 111 ~~~~~~~l~~~l~~~~~~~vi~~~~~~ 137 (342)
+......+...+++.++.++...+...
T Consensus 224 ~~~~~~~~~~~i~~~~vt~~~~~p~~l 250 (540)
T PRK13388 224 AKFSASGFLDDVRRYGATYFNYVGKPL 250 (540)
T ss_pred CCCCHHHHHHHHHHhCCeEEEehHHHH
Confidence 556778889999999999987654433
No 210
>PRK07008 long-chain-fatty-acid--CoA ligase; Validated
Probab=50.21 E-value=1.1e+02 Score=28.76 Aligned_cols=86 Identities=15% Similarity=0.110 Sum_probs=57.1
Q ss_pred cceeHHHHHHHHHHHHHHH-HHcCCCCCCEEEEECCCCChH-HHHHHHHHHhCCeEeccCCCCCHHHHHHHhhhcCceEE
Q 019348 53 ESLSFSQFKSIVIKVSHSF-RHLGITKKDVVLIFAPNSIHF-PICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLV 130 (342)
Q Consensus 53 ~~~Ty~~l~~~~~~la~~L-~~~g~~~g~~V~i~~~n~~~~-~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~v 130 (342)
-.+|.+.+.... .+..+ ...++.++|++..+.|-...+ ....++++..|+..+...+....+.+...+++.++..+
T Consensus 194 v~~s~~~~~~~~--~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~l~~~~vt~~ 271 (539)
T PRK07008 194 ALYSHRSTVLHA--YGAALPDAMGLSARDAVLPVVPMFHVNAWGLPYSAPLTGAKLVLPGPDLDGKSLYELIEAERVTFS 271 (539)
T ss_pred EEEecHHHHHHH--HHhhcccccCCCCCceEEecCchHHhhhHHHHHHHHhcCceEEEecCCcCHHHHHHHHHHcCCEEE
Confidence 456666654322 22222 345778899888776643322 23346778899888776677788899999999999998
Q ss_pred EEcccchhhh
Q 019348 131 ITVPELWDKV 140 (342)
Q Consensus 131 i~~~~~~~~~ 140 (342)
...+.....+
T Consensus 272 ~~~P~~~~~l 281 (539)
T PRK07008 272 AGVPTVWLGL 281 (539)
T ss_pred EechHHHHHH
Confidence 8876655443
No 211
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=50.01 E-value=1e+02 Score=25.12 Aligned_cols=61 Identities=10% Similarity=0.017 Sum_probs=35.6
Q ss_pred EccCCCHHHHHHHHHhccceEEEecHHHHH---HHHcCCCCCccCCCCceEEEeecccCCHHHHHHHHHh
Q 019348 266 SMGKFDIEMALRAIEKYRVTVWWVVPPIIL---ALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKN 332 (342)
Q Consensus 266 ~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~---~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~ 332 (342)
+|.-.+|.+ .....+++.+.+-+.|.-.- ..++.. +..++.++++.+|| ++.+-+..|.+.
T Consensus 112 iPG~~TptE-i~~a~~~Ga~~vKlFPa~~~gg~~~lk~l---~~p~p~~~~~ptGG--V~~~ni~~~l~a 175 (212)
T PRK05718 112 IPGVSTPSE-LMLGMELGLRTFKFFPAEASGGVKMLKAL---AGPFPDVRFCPTGG--ISPANYRDYLAL 175 (212)
T ss_pred eCCCCCHHH-HHHHHHCCCCEEEEccchhccCHHHHHHH---hccCCCCeEEEeCC--CCHHHHHHHHhC
Confidence 344456666 33455566666666664311 111111 23467888888888 887888877775
No 212
>PLN00011 cysteine synthase
Probab=49.92 E-value=1.6e+02 Score=25.79 Aligned_cols=65 Identities=14% Similarity=-0.077 Sum_probs=46.6
Q ss_pred HHHHcC-CCCC-CEEEEECCCCChHHHHHHHHHHhCCeEeccCCCCCHHHHHHHhhhcCceEEEEccc
Q 019348 70 SFRHLG-ITKK-DVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPE 135 (342)
Q Consensus 70 ~L~~~g-~~~g-~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~ 135 (342)
...+.| +.+| +.|. ....+-.-...-++|..+|.-+..+=|...+......++..+++++++++.
T Consensus 58 ~a~~~g~~~~g~~~vv-~aSsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~i~~~GA~V~~~~~~ 124 (323)
T PLN00011 58 DAEDKGLITPGKSTLI-EATAGNTGIGLACIGAARGYKVILVMPSTMSLERRIILRALGAEVHLTDQS 124 (323)
T ss_pred HHHHcCCCCCCCcEEE-EeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEECCC
Confidence 334444 6677 4444 466666777778888899987666656555567888999999999998854
No 213
>TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase. This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.
Probab=49.44 E-value=1.1e+02 Score=27.28 Aligned_cols=65 Identities=17% Similarity=0.132 Sum_probs=41.5
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeEeccCC-----CCCHHHHHHHhhh---cCceEEEE
Q 019348 65 IKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANP-----VYTVSELSKQVKD---SNPKLVIT 132 (342)
Q Consensus 65 ~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~-----~~~~~~l~~~l~~---~~~~~vi~ 132 (342)
..+...+...++++||.|++-.+ .+....-++...|+.++.++. ....+++...++. -++++|+.
T Consensus 55 ~al~~~l~al~~~~Gd~Viv~~~---~~~~~~~~~~~~G~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~t~~v~~ 127 (380)
T TIGR03588 55 SALHIACLALGVGPGDRVWTTPI---TFVATANCALYCGAKVDFVDIDPDTGNIDEDALEKKLAAAKGKLPKAIVP 127 (380)
T ss_pred HHHHHHHHHcCCCCCCEEEeCCc---chHHHHHHHHHcCCEEEEEecCCCcCCcCHHHHHHHhhcccCCCceEEEE
Confidence 34444555567889998776543 345556677788987766544 2456778777763 35666663
No 214
>PRK09162 hypoxanthine-guanine phosphoribosyltransferase; Provisional
Probab=49.01 E-value=60 Score=25.67 Aligned_cols=50 Identities=6% Similarity=0.012 Sum_probs=34.9
Q ss_pred CcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhC
Q 019348 52 DESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIG 103 (342)
Q Consensus 52 ~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G 103 (342)
+.-+||+|+.+.+.++|..+.+. +.....+.+...++-..++..+|- .+|
T Consensus 14 ~~~~s~~~i~~~i~~la~~i~~~-~~~~~~viV~i~~gg~~~A~~La~-~l~ 63 (181)
T PRK09162 14 DCLVSAAEVEAAIDRMADEITAD-LADENPLVLCVMGGGLVFTGQLLP-RLD 63 (181)
T ss_pred cEeecHHHHHHHHHHHHHHHHHH-cCCCCeEEEEECCCcHHHHHHHHH-HcC
Confidence 56789999999999999999774 222233556667776666666664 334
No 215
>TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1. This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides.
Probab=48.92 E-value=2.1e+02 Score=26.44 Aligned_cols=84 Identities=13% Similarity=0.127 Sum_probs=59.5
Q ss_pred cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCh-HHHHHHHHHHhCCeEeccCCC--CCHHHHHHHhhhcCceE
Q 019348 53 ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIH-FPICFLGVIAIGAIASTANPV--YTVSELSKQVKDSNPKL 129 (342)
Q Consensus 53 ~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~-~~~~~lA~~~~G~~~v~l~~~--~~~~~l~~~l~~~~~~~ 129 (342)
-.+|++.+...+..+... .++..++++....|.+.. .+..+++++..|+..+..++. .....+.+.++..++..
T Consensus 159 v~~s~~~~~~~~~~~~~~---~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 235 (502)
T TIGR01734 159 VQISHDNLVSFTNWMLAD---FPLSEGKQFLNQAPFSFDLSVMDLYPCLASGGTLHCLDKDITNNFKLLFEELPKTGLNV 235 (502)
T ss_pred EEEecHHHHHHHHHHHHh---CCCCCCceEEeecCceechhHHHHHHHHHCCCEEEEcCHHHhcCHHHHHHHHHHcCCeE
Confidence 577888887665544433 577888887777665533 345577889999998877654 35567788888899988
Q ss_pred EEEcccchhh
Q 019348 130 VITVPELWDK 139 (342)
Q Consensus 130 vi~~~~~~~~ 139 (342)
+...+.....
T Consensus 236 ~~~~p~~~~~ 245 (502)
T TIGR01734 236 WVSTPSFVDM 245 (502)
T ss_pred EEEChhHHHH
Confidence 8887766543
No 216
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=48.91 E-value=1e+02 Score=22.39 Aligned_cols=84 Identities=18% Similarity=0.017 Sum_probs=50.1
Q ss_pred hHHHHHHHHHHHHhhcCCeEEEccC-CCHHHHHHHHHhccceEEEecHH------HHHHHHcCCCCCccCCCCceEEEee
Q 019348 245 FHVFGLSVILYDQLQKGNCVVSMGK-FDIEMALRAIEKYRVTVWWVVPP------IILALAKNSLVRKFDISSLKLVGSG 317 (342)
Q Consensus 245 ~~~~g~~~~~~~~l~~G~~~v~~~~-~~~~~~~~~i~~~~~t~~~~~P~------~l~~l~~~~~~~~~~l~~lr~~~~g 317 (342)
.|..|.......-=..|-.++.... ..++.+.+.+.+.++.++.+.-. .++.+++..... ....++ +++|
T Consensus 11 ~H~lG~~~~~~~l~~~G~~vi~lG~~vp~e~~~~~a~~~~~d~V~iS~~~~~~~~~~~~~~~~L~~~--~~~~i~-i~~G 87 (122)
T cd02071 11 GHDRGAKVIARALRDAGFEVIYTGLRQTPEEIVEAAIQEDVDVIGLSSLSGGHMTLFPEVIELLREL--GAGDIL-VVGG 87 (122)
T ss_pred hhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEcccchhhHHHHHHHHHHHHhc--CCCCCE-EEEE
Confidence 5777764444444556666666654 56799999999999998777621 222333222111 122343 5666
Q ss_pred cccCCHHHHHHHHHh
Q 019348 318 AAPLGKELMEDCQKN 332 (342)
Q Consensus 318 G~~l~~~~~~~~~~~ 332 (342)
|. .+++..+++++.
T Consensus 88 G~-~~~~~~~~~~~~ 101 (122)
T cd02071 88 GI-IPPEDYELLKEM 101 (122)
T ss_pred CC-CCHHHHHHHHHC
Confidence 64 456667777765
No 217
>TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase. This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501.
Probab=48.81 E-value=1.3e+02 Score=28.95 Aligned_cols=98 Identities=12% Similarity=0.087 Sum_probs=67.5
Q ss_pred CCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhh-ccccCCCeEEEEccchhHHHHHHHHHHHHhhcCCeEEEc-
Q 019348 190 KQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQ-ELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSM- 267 (342)
Q Consensus 190 ~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~-~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~- 267 (342)
.++.++++.... .+|. ...+|++.+...+..+.... ..+..++|++...+|..- .++..+++++..|+..+..
T Consensus 70 ~p~~~Al~~~~~-~~~~--~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~--e~~~~~lA~~~~Gav~v~i~ 144 (625)
T TIGR02188 70 RPDKVAIIWEGD-EPGE--VRKITYRELHREVCRFANVLKSLGVKKGDRVAIYMPMIP--EAAIAMLACARIGAIHSVVF 144 (625)
T ss_pred CCCCeEEEEEcC-CCCc--eEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCH--HHHHHHHHHHHhCCEEeccC
Confidence 456777764321 1222 23578888877655543222 234678899998887654 3336788999999987776
Q ss_pred cCCCHHHHHHHHHhccceEEEecHH
Q 019348 268 GKFDIEMALRAIEKYRVTVWWVVPP 292 (342)
Q Consensus 268 ~~~~~~~~~~~i~~~~~t~~~~~P~ 292 (342)
+.+.+..+...+++.++..+++...
T Consensus 145 ~~~~~~~l~~~l~~~~~~~li~~~~ 169 (625)
T TIGR02188 145 GGFSAEALADRINDAGAKLVITADE 169 (625)
T ss_pred CCCCHHHHHHHHHhcCCCEEEEcCc
Confidence 5678899999999999999988654
No 218
>PRK05605 long-chain-fatty-acid--CoA ligase; Validated
Probab=48.80 E-value=1.4e+02 Score=28.39 Aligned_cols=85 Identities=19% Similarity=0.061 Sum_probs=61.5
Q ss_pred hHhHHHHHHHhhhhhhhh-ccccCCCeEEEEccchhHHHHHHHHHHHHhhcCCeEEEc-cCCCHHHHHHHHHhccceEEE
Q 019348 211 ILTHKNFIAASLMISAHQ-ELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSM-GKFDIEMALRAIEKYRVTVWW 288 (342)
Q Consensus 211 ~~t~~~l~~~~~~~~~~~-~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~-~~~~~~~~~~~i~~~~~t~~~ 288 (342)
.+|+..+...+..+.... ..+..++|++....+-... ++..+++++..|+..+.. +.+..+.+...+++.++..++
T Consensus 57 ~~Ty~ql~~~~~~~A~~L~~~gi~~gd~V~l~~~n~~~--~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii 134 (573)
T PRK05605 57 TTTYAELGKQVRRAAAGLRALGVRPGDRVAIVLPNCPQ--HIVAFYAVLRLGAVVVEHNPLYTAHELEHPFEDHGARVAI 134 (573)
T ss_pred cccHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHH--HHHHHHHHHhcCcEEeecCcCCCHHHHHHHHhccCCcEEE
Confidence 468888877655433222 2235678888887776553 336788999999998876 457889999999999999999
Q ss_pred ecHHHHHHH
Q 019348 289 VVPPIILAL 297 (342)
Q Consensus 289 ~~P~~l~~l 297 (342)
+....+..+
T Consensus 135 ~~~~~~~~~ 143 (573)
T PRK05605 135 VWDKVAPTV 143 (573)
T ss_pred echhhHHHH
Confidence 877765544
No 219
>PLN02614 long-chain acyl-CoA synthetase
Probab=48.80 E-value=2.6e+02 Score=27.37 Aligned_cols=87 Identities=10% Similarity=-0.042 Sum_probs=63.0
Q ss_pred hHhHHHHHHHhhhhhhhh-ccccCCCeEEEEccchhHHHHHHHHHHHHhhcCCeEEEc-cCCCHHHHHHHHHhccceEEE
Q 019348 211 ILTHKNFIAASLMISAHQ-ELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSM-GKFDIEMALRAIEKYRVTVWW 288 (342)
Q Consensus 211 ~~t~~~l~~~~~~~~~~~-~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~-~~~~~~~~~~~i~~~~~t~~~ 288 (342)
.+|++.+...+..+.... ..+..++|++...++-.. .++...++++..|+..+-. +.+.+..+...++..++.+++
T Consensus 79 ~~Ty~el~~~v~~lA~~L~~~Gv~~Gd~Vai~~~n~~--e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~vi 156 (666)
T PLN02614 79 WQTYQEVYDIVIKLGNSLRSVGVKDEAKCGIYGANSP--EWIISMEACNAHGLYCVPLYDTLGAGAVEFIISHSEVSIVF 156 (666)
T ss_pred EeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCH--HHHHHHHHHHHcCCEEEEecCCCCHHHHHHHHhccCCCEEE
Confidence 357887777655543222 234668888888777654 3436788999999988766 457889999999999999999
Q ss_pred ecHHHHHHHHc
Q 019348 289 VVPPIILALAK 299 (342)
Q Consensus 289 ~~P~~l~~l~~ 299 (342)
+....+..+..
T Consensus 157 ~~~~~~~~~~~ 167 (666)
T PLN02614 157 VEEKKISELFK 167 (666)
T ss_pred ECHHHHHHHHH
Confidence 98876665543
No 220
>PRK00174 acetyl-CoA synthetase; Provisional
Probab=48.79 E-value=1.5e+02 Score=28.68 Aligned_cols=98 Identities=12% Similarity=0.078 Sum_probs=66.9
Q ss_pred CCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhh-ccccCCCeEEEEccchhHHHHHHHHHHHHhhcCCeEEEc-
Q 019348 190 KQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQ-ELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSM- 267 (342)
Q Consensus 190 ~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~-~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~- 267 (342)
.++.++++.... .. .....+|++.+...+..+.... ..+..++|++...+|-.-. ++..+++++..|+..+..
T Consensus 80 ~p~~~Al~~~~~-~~--~~~~~lTy~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e--~~~~~lA~~~~Gav~v~l~ 154 (637)
T PRK00174 80 RGDKVAIIWEGD-DP--GDSRKITYRELHREVCRFANALKSLGVKKGDRVAIYMPMIPE--AAVAMLACARIGAVHSVVF 154 (637)
T ss_pred CCCCeEEEEECC-CC--CceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHH--HHHHHHHHHHcCCEEEecC
Confidence 467777764221 10 1234578888887765543222 2345678888887776543 336788999999998876
Q ss_pred cCCCHHHHHHHHHhccceEEEecHH
Q 019348 268 GKFDIEMALRAIEKYRVTVWWVVPP 292 (342)
Q Consensus 268 ~~~~~~~~~~~i~~~~~t~~~~~P~ 292 (342)
+.+.+..+...+++.++..+++...
T Consensus 155 ~~~~~~~l~~~l~~~~~~~li~~~~ 179 (637)
T PRK00174 155 GGFSAEALADRIIDAGAKLVITADE 179 (637)
T ss_pred CCCCHHHHHHHHHhcCCcEEEEcCc
Confidence 4578899999999999999987653
No 221
>COG2236 Predicted phosphoribosyltransferases [General function prediction only]
Probab=48.27 E-value=34 Score=27.35 Aligned_cols=34 Identities=15% Similarity=0.243 Sum_probs=28.8
Q ss_pred CcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Q 019348 52 DESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIF 85 (342)
Q Consensus 52 ~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~ 85 (342)
..-+||.++++.+.++|..+++-|.++.-.|++.
T Consensus 4 ~~~vSw~~I~~~~~~lA~kI~~s~~~PDvIiaia 37 (192)
T COG2236 4 KLYVSWEEIHRLCRALAEKIRASGFKPDVIVAIA 37 (192)
T ss_pred eEEecHHHHHHHHHHHHHHHHHcCCCCCEEEEEc
Confidence 3568999999999999999999899887655553
No 222
>PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional
Probab=48.06 E-value=1e+02 Score=28.37 Aligned_cols=55 Identities=20% Similarity=0.250 Sum_probs=36.3
Q ss_pred CCCCCCEEEEECCCCChHHHHHHHHHHhCCeEeccCCC-----CCHHHHHHHhhhcCceEEEEc
Q 019348 75 GITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPV-----YTVSELSKQVKDSNPKLVITV 133 (342)
Q Consensus 75 g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~-----~~~~~l~~~l~~~~~~~vi~~ 133 (342)
++++||.|++-. ..+.....++...|+.+++++.. ...+.+...+.. +.++|++.
T Consensus 107 ~~~pGd~VIv~~---~t~~a~~~~v~~~G~~pv~vdvd~~~~~id~~~le~~i~~-~tkaVi~~ 166 (438)
T PRK15407 107 ALKPGDEVITVA---AGFPTTVNPIIQNGLVPVFVDVELPTYNIDASLLEAAVSP-KTKAIMIA 166 (438)
T ss_pred CCCCCCEEEECC---CCcHHHHHHHHHcCCEEEEEecCCCcCCcCHHHHHHHcCc-CCeEEEEe
Confidence 788999877653 34556667777889887766543 345667766643 56666654
No 223
>PLN02330 4-coumarate--CoA ligase-like 1
Probab=47.81 E-value=1.8e+02 Score=27.47 Aligned_cols=98 Identities=11% Similarity=0.014 Sum_probs=65.1
Q ss_pred CCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhh-ccccCCCeEEEEccchhHHHHHHHHHHHHhhcCCeEEEcc
Q 019348 190 KQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQ-ELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMG 268 (342)
Q Consensus 190 ~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~-~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~ 268 (342)
.++.++++.... | ..+|+.++...+..+.... ..+..++|++...++-.. .++..+++++..|+..+...
T Consensus 41 ~p~~~a~~~~~~---~----~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~~~~--~~~~~~lA~~~~G~~~vpl~ 111 (546)
T PLN02330 41 YADKVAFVEAVT---G----KAVTYGEVVRDTRRFAKALRSLGLRKGQVVVVVLPNVA--EYGIVALGIMAAGGVFSGAN 111 (546)
T ss_pred CCCccEEEecCC---C----CcccHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCch--HHHHHHHHHHHhCcEeccCC
Confidence 355666653221 2 3578888877755543222 223567788877766554 33366889999999887664
Q ss_pred -CCCHHHHHHHHHhccceEEEecHHHHHH
Q 019348 269 -KFDIEMALRAIEKYRVTVWWVVPPIILA 296 (342)
Q Consensus 269 -~~~~~~~~~~i~~~~~t~~~~~P~~l~~ 296 (342)
.....++...+++.++..+...+..+..
T Consensus 112 ~~~~~~~l~~~l~~~~~~~~i~~~~~~~~ 140 (546)
T PLN02330 112 PTALESEIKKQAEAAGAKLIVTNDTNYGK 140 (546)
T ss_pred ccCCHHHHHHHHHhcCCeEEEEccchhhh
Confidence 4567889999999999998877665543
No 224
>PRK10252 entF enterobactin synthase subunit F; Provisional
Probab=47.71 E-value=1.8e+02 Score=30.99 Aligned_cols=97 Identities=18% Similarity=0.146 Sum_probs=66.2
Q ss_pred CCCceEEEeCC---CC----cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHH-HHHHHHHHhCCeEeccCC
Q 019348 40 YSSKLALIDAD---SD----ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFP-ICFLGVIAIGAIASTANP 111 (342)
Q Consensus 40 ~p~~~a~~~~~---~~----~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~-~~~lA~~~~G~~~v~l~~ 111 (342)
.|+.+|++-.. +| -.+|.+.+...+.... ...++.++|+++...+-+.+.- .-+++.+..|+..+..++
T Consensus 596 ~~~~~a~i~~TSGSTG~PKgV~~~h~~l~~~~~~~~---~~~~~~~~d~~l~~~~~~fd~~~~~~~~~l~~G~~l~~~~~ 672 (1296)
T PRK10252 596 QPHHTAYIIFTSGSTGRPKGVMVGQTAIVNRLLWMQ---NHYPLTADDVVLQKTPCSFDVSVWEFFWPFIAGAKLVMAEP 672 (1296)
T ss_pred CCCCeEEEEECCCCCCCCCEEEeccHHHHHHHHHHH---HhcCCCCCCEEEEeCCcchhhhHHHHHHHHhCCCEEEECCh
Confidence 45667765332 22 4677777765544333 3458889999998887765443 346777888998887664
Q ss_pred --CCCHHHHHHHhhhcCceEEEEcccchhh
Q 019348 112 --VYTVSELSKQVKDSNPKLVITVPELWDK 139 (342)
Q Consensus 112 --~~~~~~l~~~l~~~~~~~vi~~~~~~~~ 139 (342)
...++.+.+.+++.++.++...+.....
T Consensus 673 ~~~~~~~~~~~~i~~~~vt~~~~~Ps~l~~ 702 (1296)
T PRK10252 673 EAHRDPLAMQQFFAEYGVTTTHFVPSMLAA 702 (1296)
T ss_pred hccCCHHHHHHHHHHcCCeEEEeCHHHHHH
Confidence 3467788999999999998877665543
No 225
>PRK07798 acyl-CoA synthetase; Validated
Probab=47.20 E-value=2.4e+02 Score=26.24 Aligned_cols=85 Identities=5% Similarity=-0.129 Sum_probs=58.6
Q ss_pred hHhHHHHHHHhhhhhhhh-ccccCCCeEEEEccchhHHHHHHHHHHHHhhcCCeEEEcc-CCCHHHHHHHHHhccceEEE
Q 019348 211 ILTHKNFIAASLMISAHQ-ELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMG-KFDIEMALRAIEKYRVTVWW 288 (342)
Q Consensus 211 ~~t~~~l~~~~~~~~~~~-~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~ 288 (342)
.+|+..+...+..+.... ..+...+|++....+-.- .+...+++++..|+..+..+ ......+...+++.++..++
T Consensus 28 ~~ty~el~~~~~~la~~L~~~g~~~~~~v~v~~~n~~--~~~~~~~a~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~ 105 (533)
T PRK07798 28 RLTYAELEERANRLAHYLIAQGLGPGDHVGIYARNRI--EYVEAMLGAFKARAVPVNVNYRYVEDELRYLLDDSDAVALV 105 (533)
T ss_pred eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCH--HHHHHHHHHHhcCeEEEecCcCCCHHHHHHHHhhcCCCEEE
Confidence 477777776655433222 223566787777665433 34367889999999888764 46788899999999999998
Q ss_pred ecHHHHHHH
Q 019348 289 VVPPIILAL 297 (342)
Q Consensus 289 ~~P~~l~~l 297 (342)
........+
T Consensus 106 ~~~~~~~~~ 114 (533)
T PRK07798 106 YEREFAPRV 114 (533)
T ss_pred EchhhHHHH
Confidence 887655444
No 226
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=47.14 E-value=1.2e+02 Score=22.71 Aligned_cols=54 Identities=7% Similarity=0.007 Sum_probs=40.6
Q ss_pred EEEEECCCCC----hHHHHHHHHHHhCCeEeccCCCCCHHHHHHHhhhcCceEEEEcc
Q 019348 81 VVLIFAPNSI----HFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVP 134 (342)
Q Consensus 81 ~V~i~~~n~~----~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~ 134 (342)
+|.+.+..+- -...+...+-..|.-++-+....+.+++.....+.+|++|..+.
T Consensus 5 ~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e~i~~~a~~~~~d~V~lS~ 62 (137)
T PRK02261 5 TVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQEEFIDAAIETDADAILVSS 62 (137)
T ss_pred EEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEcC
Confidence 4555544332 23344455667899999999999999999999999999998864
No 227
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=47.13 E-value=35 Score=29.15 Aligned_cols=53 Identities=6% Similarity=0.148 Sum_probs=42.5
Q ss_pred cceeHHHHHH-----HHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCe
Q 019348 53 ESLSFSQFKS-----IVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAI 105 (342)
Q Consensus 53 ~~~Ty~~l~~-----~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~ 105 (342)
..+.|.++.+ ....+...|.+.|+.+++.|.+.|.++...-.+++++..+|.-
T Consensus 200 ~~i~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~ii~yC~~G~~A~~~~~~l~~~G~~ 257 (281)
T PRK11493 200 LNVPWTELVREGELKTTDELDAIFFGRGVSFDRPIIASCGSGVTAAVVVLALATLDVP 257 (281)
T ss_pred CCCCHHHhcCCCCcCCHHHHHHHHHhcCCCCCCCEEEECCcHHHHHHHHHHHHHcCCC
Confidence 3566777663 2456777788889999999999999999999999998888874
No 228
>PRK07787 acyl-CoA synthetase; Validated
Probab=47.09 E-value=2.3e+02 Score=26.02 Aligned_cols=97 Identities=19% Similarity=0.189 Sum_probs=65.2
Q ss_pred CCCceEEEeCC---CC----cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCC--ChHHHHHHHHHHhCCeEeccC
Q 019348 40 YSSKLALIDAD---SD----ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNS--IHFPICFLGVIAIGAIASTAN 110 (342)
Q Consensus 40 ~p~~~a~~~~~---~~----~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~--~~~~~~~lA~~~~G~~~v~l~ 110 (342)
.++.++++-.. ++ -.+|++.+...+..+... .++.++|++....|-. ..++..+++.+..|+..+..+
T Consensus 126 ~~~~~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~---~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~ 202 (471)
T PRK07787 126 DPDAPALIVYTSGTTGPPKGVVLSRRAIAADLDALAEA---WQWTADDVLVHGLPLFHVHGLVLGVLGPLRIGNRFVHTG 202 (471)
T ss_pred CCCceEEEEECCCCCCCCCEEEEeHHHHHHHHHHHHHh---cCCCccceeEeccCCeeechhHHHHHHHHhcCCEEEecC
Confidence 34666665332 22 367888887766555544 4677888876665543 234566888999999888665
Q ss_pred CCCCHHHHHHHhhhcCceEEEEcccchhhhh
Q 019348 111 PVYTVSELSKQVKDSNPKLVITVPELWDKVK 141 (342)
Q Consensus 111 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 141 (342)
....+.+...++ .++..+...+.....+.
T Consensus 203 -~~~~~~~~~~i~-~~~t~~~~~P~~~~~l~ 231 (471)
T PRK07787 203 -RPTPEAYAQALS-EGGTLYFGVPTVWSRIA 231 (471)
T ss_pred -CCCHHHHHHHHh-hCceEEEcchHHHHHHH
Confidence 456778888888 89888887776655443
No 229
>PF06543 Lac_bphage_repr: Lactococcus bacteriophage repressor; InterPro: IPR009498 This entry represents the C terminus of various Lactococcus bacteriophage repressor proteins.
Probab=46.93 E-value=16 Score=21.36 Aligned_cols=22 Identities=23% Similarity=0.209 Sum_probs=19.9
Q ss_pred EEEeecccCCHHHHHHHHHhCC
Q 019348 313 LVGSGAAPLGKELMEDCQKNIP 334 (342)
Q Consensus 313 ~~~~gG~~l~~~~~~~~~~~~~ 334 (342)
.+-++|.|++.+.-+.++..|+
T Consensus 23 wvSf~GrPltdevK~a~k~i~~ 44 (49)
T PF06543_consen 23 WVSFDGRPLTDEVKEAMKLIFG 44 (49)
T ss_pred heeeCCeeCCHHHHHHHHHHHh
Confidence 5779999999999999999887
No 230
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=46.88 E-value=1.4e+02 Score=27.55 Aligned_cols=56 Identities=20% Similarity=0.214 Sum_probs=35.2
Q ss_pred CCCCCEEEEECCCCChHHHHH--HHHHHhCCeEeccCCCCCHHHHHHHhhhcCceEEEEc
Q 019348 76 ITKKDVVLIFAPNSIHFPICF--LGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITV 133 (342)
Q Consensus 76 ~~~g~~V~i~~~n~~~~~~~~--lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~ 133 (342)
+++||.|++ .++.......+ ..+.+.|+.+..++.....++++..++. +.++|+++
T Consensus 97 l~~GD~VI~-~~~~Y~~T~~~~~~~l~~~Gi~v~~vd~~~d~~~l~~~I~~-~Tk~I~~e 154 (432)
T PRK06702 97 CSSGDHLLC-SSTVYGGTFNLFGVSLRKLGIDVTFFNPNLTADEIVALAND-KTKLVYAE 154 (432)
T ss_pred cCCCCEEEE-CCCchHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHhCCc-CCeEEEEE
Confidence 578887655 34443322222 2356778888888776667777777764 56677765
No 231
>PLN02654 acetate-CoA ligase
Probab=46.68 E-value=1.2e+02 Score=29.76 Aligned_cols=80 Identities=15% Similarity=0.157 Sum_probs=60.5
Q ss_pred hHhHHHHHHHhhhhhhhh-ccccCCCeEEEEccchhHHHHHHHHHHHHhhcCCeEEEc-cCCCHHHHHHHHHhccceEEE
Q 019348 211 ILTHKNFIAASLMISAHQ-ELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSM-GKFDIEMALRAIEKYRVTVWW 288 (342)
Q Consensus 211 ~~t~~~l~~~~~~~~~~~-~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~-~~~~~~~~~~~i~~~~~t~~~ 288 (342)
.+|+..|...+..+.... ..+..++|++...+|..- .++..+++++..|+..+.. +.+.++.+...+++.++.+++
T Consensus 120 ~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrV~i~~pn~~--e~v~a~lA~~~~Gav~vpv~~~~~~~~l~~~l~~~~~~~li 197 (666)
T PLN02654 120 SLTYSELLDRVCQLANYLKDVGVKKGDAVVIYLPMLM--ELPIAMLACARIGAVHSVVFAGFSAESLAQRIVDCKPKVVI 197 (666)
T ss_pred EEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCH--HHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEE
Confidence 478888887755543222 334678899998887755 3336789999999987766 568899999999999999998
Q ss_pred ecHH
Q 019348 289 VVPP 292 (342)
Q Consensus 289 ~~P~ 292 (342)
+...
T Consensus 198 ~~~~ 201 (666)
T PLN02654 198 TCNA 201 (666)
T ss_pred EcCc
Confidence 8654
No 232
>PRK07769 long-chain-fatty-acid--CoA ligase; Validated
Probab=46.52 E-value=2.8e+02 Score=26.85 Aligned_cols=84 Identities=13% Similarity=0.116 Sum_probs=57.1
Q ss_pred hHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHHHHHHHHhhcCCeEEEc-cCCC---HHHHHHHHHhccceE
Q 019348 211 ILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSM-GKFD---IEMALRAIEKYRVTV 286 (342)
Q Consensus 211 ~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~-~~~~---~~~~~~~i~~~~~t~ 286 (342)
.+|++.+...+..+.....-...++|++...++-.. .++..+++++..|+.++-. .... +..+...++..++..
T Consensus 55 ~~Ty~el~~~v~~lA~~L~~~~~~gd~V~i~~~n~~--e~~~~~lA~~~~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~ 132 (631)
T PRK07769 55 DLTWSQFGARNRAVGARLQQVTKPGDRVAILAPQNL--DYLIAFFGALYAGRIAVPLFDPAEPGHVGRLHAVLDDCTPSA 132 (631)
T ss_pred EeeHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCCh--HHHHHHHHHHHcCCEEEeeCCCCccchHHHHHHHHHhCCCCE
Confidence 468888877655543322222467888888776654 3436788999999987754 3222 467888899999999
Q ss_pred EEecHHHHHH
Q 019348 287 WWVVPPIILA 296 (342)
Q Consensus 287 ~~~~P~~l~~ 296 (342)
+++.......
T Consensus 133 vi~~~~~~~~ 142 (631)
T PRK07769 133 ILTTTDSAEG 142 (631)
T ss_pred EEEChHHHHH
Confidence 9988765543
No 233
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=46.28 E-value=1.7e+02 Score=26.90 Aligned_cols=56 Identities=14% Similarity=0.075 Sum_probs=29.3
Q ss_pred CCCEEEEECCCCChHHHHHHHHHHhCCeEeccCCCCCHHH----HHHHhhhcCceEEEEcc
Q 019348 78 KKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSE----LSKQVKDSNPKLVITVP 134 (342)
Q Consensus 78 ~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~----l~~~l~~~~~~~vi~~~ 134 (342)
.|.+|+|..+....+-++-+-. .+|..++.+......++ +...+.....+.++++.
T Consensus 299 ~gkrv~v~g~~~~~~~l~~~L~-elG~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~v~~~ 358 (429)
T cd03466 299 FGRKAAIYGEPDFVVAITRFVL-ENGMVPVLIATGSESKKLKEKLEEDLKEYVEKCVILDG 358 (429)
T ss_pred CCCEEEEEcCHHHHHHHHHHHH-HCCCEEEEEEeCCCChHHHHHHHHHHHhcCCceEEEeC
Confidence 4778888876443332232222 67877655544443333 33334555566666654
No 234
>PLN02430 long-chain-fatty-acid-CoA ligase
Probab=46.23 E-value=2.6e+02 Score=27.36 Aligned_cols=101 Identities=14% Similarity=-0.033 Sum_probs=67.1
Q ss_pred HhHHHHHHHhhhhhhhh-ccccCCCeEEEEccchhHHHHHHHHHHHHhhcCCeEEEc-cCCCHHHHHHHHHhccceEEEe
Q 019348 212 LTHKNFIAASLMISAHQ-ELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSM-GKFDIEMALRAIEKYRVTVWWV 289 (342)
Q Consensus 212 ~t~~~l~~~~~~~~~~~-~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~-~~~~~~~~~~~i~~~~~t~~~~ 289 (342)
+|+..+...+..+.... ..+..++|++....+-.. .++...++++..|+..+-. +.+.++.+...+...+++.+++
T Consensus 77 ~Ty~el~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~--ew~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~v~~ 154 (660)
T PLN02430 77 KTYKEVYEEVLQIGSALRASGAEPGSRVGIYGSNCP--QWIVAMEACAAHSLICVPLYDTLGPGAVDYIVDHAEIDFVFV 154 (660)
T ss_pred EEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCH--HHHHHHHHHHHcCCeEEEeccCCCHHHHHHHHhccCCCEEEE
Confidence 57887777655543222 234667888877776644 3446678999999887765 5678899999999999999999
Q ss_pred cHHHHHHHHcCCCCCccCCCCceEEEee
Q 019348 290 VPPIILALAKNSLVRKFDISSLKLVGSG 317 (342)
Q Consensus 290 ~P~~l~~l~~~~~~~~~~l~~lr~~~~g 317 (342)
....+..++... ....+.++.+++-
T Consensus 155 ~~~~~~~~~~~~---~~~~~~l~~ii~~ 179 (660)
T PLN02430 155 QDKKIKELLEPD---CKSAKRLKAIVSF 179 (660)
T ss_pred CHHHHHHHHhhh---cccCCCceEEEEE
Confidence 876544444321 1123456665543
No 235
>COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=46.13 E-value=2.4e+02 Score=26.72 Aligned_cols=100 Identities=16% Similarity=0.181 Sum_probs=71.0
Q ss_pred CCCceEEEeCCCC-------cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCh--HHHHHHHHHHhCCeEeccC
Q 019348 40 YSSKLALIDADSD-------ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIH--FPICFLGVIAIGAIASTAN 110 (342)
Q Consensus 40 ~p~~~a~~~~~~~-------~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~--~~~~~lA~~~~G~~~v~l~ 110 (342)
.++.+|++...+| -.+|++.+...+..+...+... +++.|+++..+|-... +...+++.+..|+..+...
T Consensus 169 ~~~d~a~i~yTSGTTG~PKgv~~th~~~~~~~~~~~~~~~~~-~~~~d~~l~~lPl~H~~Gl~~~~~~~~~~G~~~v~~~ 247 (534)
T COG0318 169 DPDDLAFLLYTSGTTGLPKGVVLTHRNLLANAAGIAAALGGG-LTPDDVVLSWLPLFHIFGLIVGLLAPLLGGGTLVLLS 247 (534)
T ss_pred CCCCEEEEEeCCCCCCCCCEeEEecHhHHHHHHHHHHHhccc-CCCCceEEEecChHHHHHHHHHHHHHHHcCCEEEeCC
Confidence 3677777643222 5789999888877776666432 6788887777776643 4455677788888888777
Q ss_pred C-CCCHHHHHHHhhhcCceEEEEcccchhhh
Q 019348 111 P-VYTVSELSKQVKDSNPKLVITVPELWDKV 140 (342)
Q Consensus 111 ~-~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 140 (342)
+ ....+.+...++..++..+...+.+...+
T Consensus 248 ~~~f~~~~~~~~i~~~~~t~~~~vPt~~~~l 278 (534)
T COG0318 248 PEPFDPEEVLWLIEKYKVTVLSGVPTFLREL 278 (534)
T ss_pred CCCcCHHHHHHHHHHhcceEEecchHHHHHH
Confidence 5 67888888888888877777776666553
No 236
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=46.03 E-value=1e+02 Score=27.02 Aligned_cols=69 Identities=10% Similarity=0.055 Sum_probs=51.1
Q ss_pred HHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeEeccCCCCCHHHHHHHhhhcCceEEEEcccchhh
Q 019348 68 SHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDK 139 (342)
Q Consensus 68 a~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~ 139 (342)
-.-|++.|+.+|++|+|..--+.-.+...+|.++ |.-++.++... ..-++.++..++++.+...+..+.
T Consensus 171 YspLk~~g~~pG~~vgI~GlGGLGh~aVq~AKAM-G~rV~vis~~~--~kkeea~~~LGAd~fv~~~~d~d~ 239 (360)
T KOG0023|consen 171 YSPLKRSGLGPGKWVGIVGLGGLGHMAVQYAKAM-GMRVTVISTSS--KKKEEAIKSLGADVFVDSTEDPDI 239 (360)
T ss_pred eehhHHcCCCCCcEEEEecCcccchHHHHHHHHh-CcEEEEEeCCc--hhHHHHHHhcCcceeEEecCCHHH
Confidence 3457888999999999999999999999998765 55555565543 234567888899988876544333
No 237
>PRK12476 putative fatty-acid--CoA ligase; Provisional
Probab=45.74 E-value=1.5e+02 Score=28.46 Aligned_cols=85 Identities=15% Similarity=0.085 Sum_probs=59.4
Q ss_pred hHhHHHHHHHhhhhhhhhccccCCCeEEEEccchhHHHHHHHHHHHHhhcCCeEEEc-cC-CC--HHHHHHHHHhccceE
Q 019348 211 ILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSM-GK-FD--IEMALRAIEKYRVTV 286 (342)
Q Consensus 211 ~~t~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~-~~-~~--~~~~~~~i~~~~~t~ 286 (342)
.+|+..+...+..+.....-...++|++...++-.. .++..+++++..|+..+.. +. .. ++.+...++..++..
T Consensus 68 ~~Ty~el~~~~~~lA~~L~~~~~~gd~V~l~~~n~~--e~~~~~lA~~~aG~v~vpl~~~~~~~~~~~l~~~l~~~~~~~ 145 (612)
T PRK12476 68 ELTWTQLGVRLRAVGARLQQVAGPGDRVAILAPQGI--DYVAGFFAAIKAGTIAVPLFAPELPGHAERLDTALRDAEPTV 145 (612)
T ss_pred EEeHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCh--hHHHHHHHHHHcCceeEecCCCCcchhHHHHHHHHHhCCCCE
Confidence 468887777655543322222567888888887764 3446788999999987755 32 22 678889999999999
Q ss_pred EEecHHHHHHH
Q 019348 287 WWVVPPIILAL 297 (342)
Q Consensus 287 ~~~~P~~l~~l 297 (342)
+++.+..+..+
T Consensus 146 li~~~~~~~~~ 156 (612)
T PRK12476 146 VLTTTAAAEAV 156 (612)
T ss_pred EEEcHHHHHHH
Confidence 99887665443
No 238
>PF09269 DUF1967: Domain of unknown function (DUF1967); InterPro: IPR015349 The Obg family comprises a group of ancient P-loop small G proteins (GTPases) belonging to the TRAFAC (for translation factors) class and can be subdivided into several distinct protein subfamilies []. OBG GTPases have been found in both prokaryotes and eukaryotes []. The structure of the OBG GTPase from Thermus thermophilus has been determined []. This entry represents a C-terminal domain found in certain OBG GTPases. This domain contains a four-stranded beta sheet and three alpha helices flanked by an additional beta strand. It is predominantly found in the bacterial GTP-binding protein Obg, and is functionally uncharacterised. ; GO: 0000166 nucleotide binding; PDB: 1UDX_A.
Probab=45.64 E-value=22 Score=23.03 Aligned_cols=22 Identities=27% Similarity=0.379 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHcCCCCCCEEEE
Q 019348 63 IVIKVSHSFRHLGITKKDVVLI 84 (342)
Q Consensus 63 ~~~~la~~L~~~g~~~g~~V~i 84 (342)
+...+-..|++.|++.||.|-|
T Consensus 41 ~~~Gv~~~L~~~G~~~GD~V~I 62 (69)
T PF09269_consen 41 KKMGVEKALRKAGAKEGDTVRI 62 (69)
T ss_dssp HHTTHHHHHHTTT--TT-EEEE
T ss_pred HHCCHHHHHHHcCCCCCCEEEE
Confidence 3444677888899999999876
No 239
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=45.41 E-value=1.6e+02 Score=27.12 Aligned_cols=31 Identities=3% Similarity=0.078 Sum_probs=18.7
Q ss_pred CCCEEEEECCCCChHHHHHHHHHHhCCeEecc
Q 019348 78 KKDVVLIFAPNSIHFPICFLGVIAIGAIASTA 109 (342)
Q Consensus 78 ~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l 109 (342)
.|.+|+|.......+-++-+-. .+|..++.+
T Consensus 302 ~gkrv~i~g~~~~~~~la~~L~-elGm~v~~~ 332 (435)
T cd01974 302 HGKKFALYGDPDFLIGLTSFLL-ELGMEPVHV 332 (435)
T ss_pred CCCEEEEEcChHHHHHHHHHHH-HCCCEEEEE
Confidence 4778888876554443333333 788877443
No 240
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=45.35 E-value=1.3e+02 Score=22.55 Aligned_cols=85 Identities=14% Similarity=0.130 Sum_probs=53.1
Q ss_pred hHHHHHHHHHHHHhhcCCeEEEcc-CCCHHHHHHHHHhccceEEEecHH------HHHHHHcCCCCCccCCCCceEEEee
Q 019348 245 FHVFGLSVILYDQLQKGNCVVSMG-KFDIEMALRAIEKYRVTVWWVVPP------IILALAKNSLVRKFDISSLKLVGSG 317 (342)
Q Consensus 245 ~~~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~------~l~~l~~~~~~~~~~l~~lr~~~~g 317 (342)
.|..|........-..|..++... ...++++.+.+.++++.++.++-. .++.+.+... ...++.+ .+++|
T Consensus 15 ~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e~i~~~a~~~~~d~V~lS~~~~~~~~~~~~~~~~L~--~~~~~~~-~i~vG 91 (137)
T PRK02261 15 CHAVGNKILDRALTEAGFEVINLGVMTSQEEFIDAAIETDADAILVSSLYGHGEIDCRGLREKCI--EAGLGDI-LLYVG 91 (137)
T ss_pred hhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEcCccccCHHHHHHHHHHHH--hcCCCCC-eEEEE
Confidence 788887555555567888888775 457899999999999998776631 2233333321 1223345 46677
Q ss_pred cccC-----CHHHHHHHHHh
Q 019348 318 AAPL-----GKELMEDCQKN 332 (342)
Q Consensus 318 G~~l-----~~~~~~~~~~~ 332 (342)
|... +....+++++.
T Consensus 92 G~~~~~~~~~~~~~~~l~~~ 111 (137)
T PRK02261 92 GNLVVGKHDFEEVEKKFKEM 111 (137)
T ss_pred CCCCCCccChHHHHHHHHHc
Confidence 7553 34455566664
No 241
>PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional
Probab=45.32 E-value=2e+02 Score=27.18 Aligned_cols=97 Identities=14% Similarity=0.066 Sum_probs=65.1
Q ss_pred CCCceEEEeCC---CC----cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChH-HHHHHHHHHhCCeEeccCC
Q 019348 40 YSSKLALIDAD---SD----ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHF-PICFLGVIAIGAIASTANP 111 (342)
Q Consensus 40 ~p~~~a~~~~~---~~----~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~-~~~~lA~~~~G~~~v~l~~ 111 (342)
.++.++++-.. ++ -.+|.+.+....... ....++++++++...+|-...+ +..+++.+..|+..++.+
T Consensus 178 ~~~~~a~il~TSGTTG~PK~V~~t~~~~~~~~~~~---~~~~~~~~~~~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~- 253 (542)
T PRK06155 178 QPGDTAAILYTSGTTGPSKGVCCPHAQFYWWGRNS---AEDLEIGADDVLYTTLPLFHTNALNAFFQALLAGATYVLEP- 253 (542)
T ss_pred CCCCeEEEEECCCCCCCCcEEEEEHHHHHHHHHHH---HHhcCCCCCCEEEEecCHHHHHHHHHHHHHHHcCceEEeeC-
Confidence 35667766332 22 356787776544333 3445788899988877754332 234578888898877654
Q ss_pred CCCHHHHHHHhhhcCceEEEEcccchhhh
Q 019348 112 VYTVSELSKQVKDSNPKLVITVPELWDKV 140 (342)
Q Consensus 112 ~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 140 (342)
....+.+...+++.++..+...+.....+
T Consensus 254 ~~~~~~~~~~l~~~~~t~~~~~p~~~~~l 282 (542)
T PRK06155 254 RFSASGFWPAVRRHGATVTYLLGAMVSIL 282 (542)
T ss_pred CCCHHHHHHHHHHhCCcEEEchHHHHHHH
Confidence 56788899999999999998876655443
No 242
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=45.26 E-value=1.6e+02 Score=23.64 Aligned_cols=83 Identities=12% Similarity=0.055 Sum_probs=54.3
Q ss_pred CcceeHHHHHHHHHHHHHHHH-------HcCCCCCCEEEEECCCC--ChH--HHHHHHHHHhCCeEeccCCCCCHHHHHH
Q 019348 52 DESLSFSQFKSIVIKVSHSFR-------HLGITKKDVVLIFAPNS--IHF--PICFLGVIAIGAIASTANPVYTVSELSK 120 (342)
Q Consensus 52 ~~~~Ty~~l~~~~~~la~~L~-------~~g~~~g~~V~i~~~n~--~~~--~~~~lA~~~~G~~~v~l~~~~~~~~l~~ 120 (342)
...++..|.+-.+..+...+. ..+...+.+|.+.+..+ .+. ..+-..+-..|.-++-+..+.+.+++..
T Consensus 48 ~~~i~va~e~~as~~~~~~l~~l~~~~~~~~~~~~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~~p~~~l~~ 127 (201)
T cd02070 48 EGEIFVPELLMAADAMKAGLDLLKPLLGKSKSAKKGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRDVPPEEFVE 127 (201)
T ss_pred cCCeeHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHH
Confidence 357777777666555444332 22222244666666554 232 2333334467888888999999999999
Q ss_pred HhhhcCceEEEEcc
Q 019348 121 QVKDSNPKLVITVP 134 (342)
Q Consensus 121 ~l~~~~~~~vi~~~ 134 (342)
.+++.+|++|..+.
T Consensus 128 ~~~~~~~d~v~lS~ 141 (201)
T cd02070 128 AVKEHKPDILGLSA 141 (201)
T ss_pred HHHHcCCCEEEEec
Confidence 99999999998763
No 243
>TIGR01136 cysKM cysteine synthases. This model discriminates cysteine synthases (EC 2.5.1.47) (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblamnce to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded from the seed and score below the trusted cutoff.
Probab=44.80 E-value=2e+02 Score=24.72 Aligned_cols=90 Identities=17% Similarity=0.090 Sum_probs=57.3
Q ss_pred ceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCC-CCCCEEEEECCCCChHHHHHHHHHHhCCeEeccCCCCCHHHHHHH
Q 019348 43 KLALIDADSDESLSFSQFKSIVIKVSHSFRHLGI-TKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQ 121 (342)
Q Consensus 43 ~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~-~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~ 121 (342)
++.+...+.+.+-||+. +-+..+...+.+.|. .+|+.| +....+-.-..+-++|...|.-+..+-|...+......
T Consensus 23 ~i~~K~E~~~ptGS~K~--R~a~~~~~~a~~~g~~~~g~~v-v~aSsGN~g~alA~~a~~~G~~~~i~vp~~~~~~k~~~ 99 (299)
T TIGR01136 23 RVLAKLEGRNPSGSVKD--RIALSMIEDAEKRGLLKPGDTI-IEATSGNTGIALAMVAAAKGYKLILTMPETMSLERRKL 99 (299)
T ss_pred eEEEEEcccCCCCCccH--HHHHHHHHHHHHcCCCCCCCEE-EEeCCChHHHHHHHHHHHcCCcEEEEECCCCCHHHHHH
Confidence 55555553344445554 223333333444453 677765 45566666777777888899877666666655667788
Q ss_pred hhhcCceEEEEccc
Q 019348 122 VKDSNPKLVITVPE 135 (342)
Q Consensus 122 l~~~~~~~vi~~~~ 135 (342)
++..++++++++.+
T Consensus 100 ~~~~GA~v~~~~~~ 113 (299)
T TIGR01136 100 LRAYGAELILTPAE 113 (299)
T ss_pred HHHcCCEEEEeCCC
Confidence 99999999998764
No 244
>PTZ00237 acetyl-CoA synthetase; Provisional
Probab=44.69 E-value=1.2e+02 Score=29.53 Aligned_cols=80 Identities=11% Similarity=0.035 Sum_probs=60.5
Q ss_pred hhHhHHHHHHHhhhhhhhh-ccccCCCeEEEEccchhHHHHHHHHHHHHhhcCCeEEEc-cCCCHHHHHHHHHhccceEE
Q 019348 210 VILTHKNFIAASLMISAHQ-ELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSM-GKFDIEMALRAIEKYRVTVW 287 (342)
Q Consensus 210 v~~t~~~l~~~~~~~~~~~-~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~-~~~~~~~~~~~i~~~~~t~~ 287 (342)
..+|++.+...+..+.... ..+..++|++...+|..--+ +..+++++..|+..+.. +.+.++.+...+++.++.++
T Consensus 91 ~~~Ty~eL~~~v~~lA~~L~~~Gv~~GDrV~i~~~n~~e~--~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~l 168 (647)
T PTZ00237 91 IKLTYYQLYEKVCEFSRVLLNLNISKNDNVLIYMANTLEP--LIAMLSCARIGATHCVLFDGYSVKSLIDRIETITPKLI 168 (647)
T ss_pred EEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHH--HHHHHHHHHhCcEEEeeCCCCCHHHHHHHHHhcCCCEE
Confidence 3578888877655543222 33567899999988886533 36789999999987666 56889999999999999999
Q ss_pred EecH
Q 019348 288 WVVP 291 (342)
Q Consensus 288 ~~~P 291 (342)
++..
T Consensus 169 i~~~ 172 (647)
T PTZ00237 169 ITTN 172 (647)
T ss_pred EEcc
Confidence 8864
No 245
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=44.68 E-value=1.2e+02 Score=21.81 Aligned_cols=45 Identities=7% Similarity=-0.042 Sum_probs=34.0
Q ss_pred ChHHHHHHHHH--HhCCeEeccCCCCCHHHHHHHhhhcCceEEEEcc
Q 019348 90 IHFPICFLGVI--AIGAIASTANPVYTVSELSKQVKDSNPKLVITVP 134 (342)
Q Consensus 90 ~~~~~~~lA~~--~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~ 134 (342)
.++-..+++.+ ..|.-++-+.+..+.+++...+.+.+|++|..+.
T Consensus 12 H~lG~~~~~~~l~~~G~~V~~lg~~~~~~~l~~~~~~~~pdvV~iS~ 58 (119)
T cd02067 12 HDIGKNIVARALRDAGFEVIDLGVDVPPEEIVEAAKEEDADAIGLSG 58 (119)
T ss_pred hhHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEec
Confidence 33333344433 4788888889999999999999999999988763
No 246
>PRK07867 acyl-CoA synthetase; Validated
Probab=44.54 E-value=1.5e+02 Score=27.99 Aligned_cols=84 Identities=13% Similarity=-0.041 Sum_probs=57.7
Q ss_pred hHhHHHHHHHhhhhhhhhcc--ccCCCeEEEEccchhHHHHHHHHHHHHhhcCCeEEEc-cCCCHHHHHHHHHhccceEE
Q 019348 211 ILTHKNFIAASLMISAHQEL--VGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSM-GKFDIEMALRAIEKYRVTVW 287 (342)
Q Consensus 211 ~~t~~~l~~~~~~~~~~~~~--~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~-~~~~~~~~~~~i~~~~~t~~ 287 (342)
.+|+..+...+..+.....- ...+++++....+-. ..++..++.++..|+.++.. +...++.+...+++.++..+
T Consensus 28 ~~Ty~el~~~v~~lA~~L~~~~~~~~~~~V~i~~~n~--~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~l 105 (529)
T PRK07867 28 FTSWREHIRGSAARAAALRARLDPTRPPHVGVLLDNT--PEFSLLLGAAALSGIVPVGLNPTRRGAALARDIAHADCQLV 105 (529)
T ss_pred EEeHHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCC--HHHHHHHHHHHhcCCEEEEecCCCChHHHHHHHHhCCCeEE
Confidence 36777777665554332222 234566666655543 23436788999999998866 45678999999999999999
Q ss_pred EecHHHHHH
Q 019348 288 WVVPPIILA 296 (342)
Q Consensus 288 ~~~P~~l~~ 296 (342)
++.......
T Consensus 106 i~~~~~~~~ 114 (529)
T PRK07867 106 LTESAHAEL 114 (529)
T ss_pred EECHhHHHH
Confidence 998866553
No 247
>TIGR03595 Obg_CgtA_exten Obg family GTPase CgtA, C-terminal extension. CgtA (see model TIGR02729) is a broadly conserved member of the obg family of GTPases associated with ribosome maturation. This model represents a unique C-terminal domain found in some but not all sequences of CgtA. This region is preceded, and may be followed, by a region of low-complexity sequence.
Probab=44.40 E-value=30 Score=22.38 Aligned_cols=19 Identities=32% Similarity=0.373 Sum_probs=15.5
Q ss_pred HHHHHHHcCCCCCCEEEEE
Q 019348 67 VSHSFRHLGITKKDVVLIF 85 (342)
Q Consensus 67 la~~L~~~g~~~g~~V~i~ 85 (342)
+-..|++.|++.||.|-|.
T Consensus 45 v~~~L~~~G~~~GD~V~Ig 63 (69)
T TIGR03595 45 VEDALRKAGAKDGDTVRIG 63 (69)
T ss_pred HHHHHHHcCCCCCCEEEEc
Confidence 5667788899999999874
No 248
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=43.72 E-value=44 Score=29.24 Aligned_cols=52 Identities=17% Similarity=0.278 Sum_probs=41.1
Q ss_pred ceeHHHHHHH------HHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCe
Q 019348 54 SLSFSQFKSI------VIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAI 105 (342)
Q Consensus 54 ~~Ty~~l~~~------~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~ 105 (342)
.+.|.++.+. ...+...+.+.|+.+++.|.+.|..+.....+++++-.+|..
T Consensus 238 nip~~~~~~~~~~~~~~~el~~~~~~~gi~~~~~iv~yC~sG~~A~~~~~~L~~~G~~ 295 (320)
T PLN02723 238 CVPFPQMLDSSQTLLPAEELKKRFEQEGISLDSPIVASCGTGVTACILALGLHRLGKT 295 (320)
T ss_pred ccCHHHhcCCCCCCCCHHHHHHHHHhcCCCCCCCEEEECCcHHHHHHHHHHHHHcCCC
Confidence 4556665432 456777788889999999999999998888888888888864
No 249
>PRK12406 long-chain-fatty-acid--CoA ligase; Provisional
Probab=43.56 E-value=2.5e+02 Score=26.16 Aligned_cols=68 Identities=15% Similarity=0.157 Sum_probs=47.3
Q ss_pred HHcCCCCCCEEEEECCCCChH-HHHHHHHHHhCCeEeccCCCCCHHHHHHHhhhcCceEEEEcccchhhh
Q 019348 72 RHLGITKKDVVLIFAPNSIHF-PICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKV 140 (342)
Q Consensus 72 ~~~g~~~g~~V~i~~~n~~~~-~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 140 (342)
...++.+++++....+-.... ....+..+..|+..+.. +....+++...+++.++.++...+.....+
T Consensus 189 ~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l 257 (509)
T PRK12406 189 LIYGLKPGIRALLTGPLYHSAPNAYGLRAGRLGGVLVLQ-PRFDPEELLQLIERHRITHMHMVPTMFIRL 257 (509)
T ss_pred hhcCCCCCceEEEEeCCcccchHHHHHHHHhhheEEEEc-cCCCHHHHHHHHHHcCCeEEEccHHHHHHH
Confidence 345788899888776644322 23334456677776654 456788999999999999999887765544
No 250
>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase. Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.
Probab=43.40 E-value=1.7e+02 Score=31.68 Aligned_cols=100 Identities=14% Similarity=0.004 Sum_probs=65.2
Q ss_pred CCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhh-ccccCCCeEEEEccchhHHHHHHHHHHHHhhcCCeEEEcc
Q 019348 190 KQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQ-ELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMG 268 (342)
Q Consensus 190 ~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~-~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~ 268 (342)
.++.++++...+...+......+|++.+...+..+.... ..+..+++++...++-.. .++..+++++..|+..+..+
T Consensus 249 ~pd~~A~~~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~gv~~g~~V~i~~~~~~--~~i~~~lA~l~~G~~~vpld 326 (1389)
T TIGR03443 249 HPDRTCVVETPSFLDPSSKTRSFTYKQINEASNILAHYLLKTGIKRGDVVMIYAYRGV--DLVVAVMGVLKAGATFSVID 326 (1389)
T ss_pred CCCCeEEEeccccccccCCCceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEecCCH--HHHHHHHHHHhhCcEEeccC
Confidence 466777765322111111234579998888766543222 223567888888777654 33367899999999988775
Q ss_pred C-CCHHHHHHHHHhccceEEEecH
Q 019348 269 K-FDIEMALRAIEKYRVTVWWVVP 291 (342)
Q Consensus 269 ~-~~~~~~~~~i~~~~~t~~~~~P 291 (342)
+ ..+.++...++..++..+++..
T Consensus 327 p~~p~~~~~~~l~~~~~~~li~~~ 350 (1389)
T TIGR03443 327 PAYPPARQTIYLSVAKPRALIVIE 350 (1389)
T ss_pred CCCcHHHHHHHHHhcCCCEEEEec
Confidence 4 5677788888888888777643
No 251
>TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase. Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris.
Probab=43.25 E-value=2.9e+02 Score=25.98 Aligned_cols=96 Identities=9% Similarity=0.166 Sum_probs=63.5
Q ss_pred CCCceEEEeCC---CC----cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCh--HHHHHHHHHHhCCeEeccC
Q 019348 40 YSSKLALIDAD---SD----ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIH--FPICFLGVIAIGAIASTAN 110 (342)
Q Consensus 40 ~p~~~a~~~~~---~~----~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~--~~~~~lA~~~~G~~~v~l~ 110 (342)
.++.+|++-.. ++ -.+|.+.+...+..... ..+++.+|++....|-... ++...+..+..|...+. .
T Consensus 193 ~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~---~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~g~~~~~-~ 268 (538)
T TIGR03208 193 SPDDVTQLIYTSGTTGEPKGVMHTANTLFSNIHPYAE---RLELGGGDVILMASPMAHQTGFMYGLMMPLILNATAVL-Q 268 (538)
T ss_pred CCCCeEEEEECCCCCCCCcEEEeehHHHHHHHHHHHh---hcCCCCCCeEEEeCCchhHHHHHHHHHHHHHcCCEEEe-c
Confidence 45667765332 22 46677777665554443 3467888988888776542 34556777778887654 4
Q ss_pred CCCCHHHHHHHhhhcCceEEEEcccchhh
Q 019348 111 PVYTVSELSKQVKDSNPKLVITVPELWDK 139 (342)
Q Consensus 111 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~~ 139 (342)
+......+...+++.++.++...+.....
T Consensus 269 ~~~~~~~~~~~l~~~~vt~~~~~p~~~~~ 297 (538)
T TIGR03208 269 DIWNPARAAELIRETGVTFTMASTPFLTD 297 (538)
T ss_pred CccCHHHHHHHHHHhCCeEEecCHHHHHH
Confidence 46678888999999999998876655443
No 252
>PRK13383 acyl-CoA synthetase; Provisional
Probab=42.67 E-value=1.8e+02 Score=27.10 Aligned_cols=85 Identities=11% Similarity=0.033 Sum_probs=58.6
Q ss_pred hHhHHHHHHHhhhhhhhh-ccccCCCeEEEEccchhHHHHHHHHHHHHhhcCCeEEEcc-CCCHHHHHHHHHhccceEEE
Q 019348 211 ILTHKNFIAASLMISAHQ-ELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMG-KFDIEMALRAIEKYRVTVWW 288 (342)
Q Consensus 211 ~~t~~~l~~~~~~~~~~~-~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~ 288 (342)
.+|...+...+..+.... ..+..++|++....+-.- .++..++.++..|+..+..+ .+..+.+...+++.++..++
T Consensus 60 ~lTy~el~~~~~~la~~L~~~gi~~g~~V~i~~~~~~--~~~~~~la~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii 137 (516)
T PRK13383 60 ALSYRELQRATESLARRLTRDGVAPGRAVGVMCRNGR--GFVTAVFAVGLLGADVVPISTEFRSDALAAALRAHHISTVV 137 (516)
T ss_pred cEeHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCH--HHHHHHHHHHHhCeEEEEcCccCCHHHHHHHHhcCCCCEEE
Confidence 356666665544432222 223567788777776433 33366788999999988774 46789999999999999999
Q ss_pred ecHHHHHHH
Q 019348 289 VVPPIILAL 297 (342)
Q Consensus 289 ~~P~~l~~l 297 (342)
..+...+.+
T Consensus 138 ~~~~~~~~~ 146 (516)
T PRK13383 138 ADNEFAERI 146 (516)
T ss_pred EchhHHHHH
Confidence 988766554
No 253
>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]
Probab=42.60 E-value=1e+02 Score=26.55 Aligned_cols=65 Identities=28% Similarity=0.201 Sum_probs=50.0
Q ss_pred CCCCCCEEEEECCCCChHHHHHHHHHHhCCeEecc-CCCCCHHHHHHHhhhcCceEEEEcccchhh
Q 019348 75 GITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTA-NPVYTVSELSKQVKDSNPKLVITVPELWDK 139 (342)
Q Consensus 75 g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l-~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~ 139 (342)
.+++||.|+=-..||.---+.+--|-..|.-.+.+ .-.-..+++...|+..+++-||++++....
T Consensus 157 ~L~~GD~vIQNganS~VG~~ViQlaka~GiktinvVRdR~~ieel~~~Lk~lGA~~ViTeeel~~~ 222 (354)
T KOG0025|consen 157 QLNKGDSVIQNGANSGVGQAVIQLAKALGIKTINVVRDRPNIEELKKQLKSLGATEVITEEELRDR 222 (354)
T ss_pred hcCCCCeeeecCcccHHHHHHHHHHHHhCcceEEEeecCccHHHHHHHHHHcCCceEecHHHhcch
Confidence 56889988888888876667777777778755444 444566889999999999999999876543
No 254
>PRK07514 malonyl-CoA synthase; Validated
Probab=42.45 E-value=1.9e+02 Score=26.83 Aligned_cols=85 Identities=13% Similarity=0.019 Sum_probs=59.8
Q ss_pred hHhHHHHHHHhhhhhhhh-ccccCCCeEEEEccchhHHHHHHHHHHHHhhcCCeEEEcc-CCCHHHHHHHHHhccceEEE
Q 019348 211 ILTHKNFIAASLMISAHQ-ELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMG-KFDIEMALRAIEKYRVTVWW 288 (342)
Q Consensus 211 ~~t~~~l~~~~~~~~~~~-~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~ 288 (342)
.+|+..+...+..+.... ..+..++|++....+-.. .+...+++++..|+..+... ...+..+...+++.+++.+.
T Consensus 28 ~~Ty~eL~~~~~~la~~L~~~g~~~gd~v~i~~~~~~--e~~v~~la~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii 105 (504)
T PRK07514 28 RYTYGDLDAASARLANLLVALGVKPGDRVAVQVEKSP--EALALYLATLRAGAVFLPLNTAYTLAELDYFIGDAEPALVV 105 (504)
T ss_pred EEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCH--HHHHHHHHHHHcCcEEEECCCCCCHHHHHHHHHhCCCcEEE
Confidence 567777766544433221 224567888877776653 44467889999999888664 56788999999999999998
Q ss_pred ecHHHHHHH
Q 019348 289 VVPPIILAL 297 (342)
Q Consensus 289 ~~P~~l~~l 297 (342)
..+.....+
T Consensus 106 ~~~~~~~~~ 114 (504)
T PRK07514 106 CDPANFAWL 114 (504)
T ss_pred EccchhHHH
Confidence 887766543
No 255
>PF08967 DUF1884: Domain of unknown function (DUF1884); InterPro: IPR014418 This group represents an uncharacterised conserved protein.; PDB: 2PK8_A.
Probab=42.41 E-value=69 Score=21.42 Aligned_cols=68 Identities=9% Similarity=0.236 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeEeccCCCCCHHHHHHHhhhcCceEEEEcccchh
Q 019348 59 QFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWD 138 (342)
Q Consensus 59 ~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~ 138 (342)
++.+.++.-++.|+.-|+.|. |.++++.-.+++.. -.+..-.. -.+.++..+.++|++|+....
T Consensus 9 ~il~~ie~~inELk~dG~ePD--ivL~G~ef~e~~~~--~~l~~~~l------------kvy~i~ELg~DAVvaDSk~LG 72 (85)
T PF08967_consen 9 RILELIEEKINELKEDGFEPD--IVLVGPEFYEFLSE--EVLEVSGL------------KVYVIEELGSDAVVADSKYLG 72 (85)
T ss_dssp HHHHHHHHHHHHHHHTT------EEEE-HHHHHHHHH-----EETTE------------EEEE-GGGTTEEEEE-TTTTT
T ss_pred HHHHHHHHHHHHHHhcCCCCC--EEEEcHHHHHHHHH--HHHHhhCc------------eEEEHHhcCCceEEEchHHhc
Confidence 456778888999999999875 77776655554433 00111010 113478889999999988877
Q ss_pred hhhc
Q 019348 139 KVKD 142 (342)
Q Consensus 139 ~~~~ 142 (342)
..+.
T Consensus 73 ~~~~ 76 (85)
T PF08967_consen 73 QLKK 76 (85)
T ss_dssp TSTT
T ss_pred cccc
Confidence 6553
No 256
>PF09664 DUF2399: Protein of unknown function C-terminus (DUF2399); InterPro: IPR024465 This domain is found in archaeal, bacterial and eukaryotic proteins. Its function is unknown.
Probab=42.31 E-value=1.6e+02 Score=22.62 Aligned_cols=76 Identities=25% Similarity=0.300 Sum_probs=54.0
Q ss_pred hhcCCeEEEccCCCHHHH---HHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCCHHHHHHHHHhCC
Q 019348 258 LQKGNCVVSMGKFDIEMA---LRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIP 334 (342)
Q Consensus 258 l~~G~~~v~~~~~~~~~~---~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~ 334 (342)
...|+++....+||+..+ -+++++++.+.+-+.+.-|.............+. +.. - .+..+.+.+.+++.
T Consensus 63 ~~~g~~l~y~GDfDp~Gl~IA~~l~~r~~~~~Wrm~~~dY~~~~~~~~~~~~~l~-l~~---v-~p~~~~L~~~m~~~-- 135 (152)
T PF09664_consen 63 AAAGARLYYSGDFDPEGLRIANRLIQRYGARPWRMDAEDYLAALSAEPLSGRRLK-LPN---V-APWLPELAEAMRER-- 135 (152)
T ss_pred HhCCCEEEEecCCCHHHHHHHHHHHHHhCCccccCCHHHHHHhccccCCCCCcCC-ccc---C-ChhcHHHHHHHHHh--
Confidence 356888888899998554 3446778888899999998777666544444444 333 2 68889999999887
Q ss_pred CCcccc
Q 019348 335 GATIFQ 340 (342)
Q Consensus 335 ~~~l~~ 340 (342)
+..++|
T Consensus 136 ~~a~~Q 141 (152)
T PF09664_consen 136 GRAVYQ 141 (152)
T ss_pred CceeeH
Confidence 566554
No 257
>TIGR02316 propion_prpE propionate--CoA ligase. This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate.
Probab=41.98 E-value=1.5e+02 Score=28.76 Aligned_cols=97 Identities=15% Similarity=0.096 Sum_probs=65.8
Q ss_pred CCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhh-ccccCCCeEEEEccchhHHHHHHHHHHHHhhcCCeEEEc-
Q 019348 190 KQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQ-ELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSM- 267 (342)
Q Consensus 190 ~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~-~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~- 267 (342)
.++.++++.. +..+|. .-.+|++.|...+..+.... ..+..++|++...+|..- ..+..+++++..|+..+..
T Consensus 65 ~p~~~Al~~~-~~~~~~--~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~n~~--e~v~~~lA~~~~Gav~vpl~ 139 (628)
T TIGR02316 65 RGEQLALVTV-SSETGQ--ERTLTYRQLHREVNVFASALRALGVGRGDRVLIYMPMIA--EAVFAMLACARIGAIHSVVF 139 (628)
T ss_pred CCCCeEEEEE-cCCCCc--eEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCH--HHHHHHHHHHHhCCEEEecC
Confidence 3456666542 222222 12468888877655543222 235678999998888754 3336788999999987766
Q ss_pred cCCCHHHHHHHHHhccceEEEecH
Q 019348 268 GKFDIEMALRAIEKYRVTVWWVVP 291 (342)
Q Consensus 268 ~~~~~~~~~~~i~~~~~t~~~~~P 291 (342)
+.+.+..+...++..++.++++..
T Consensus 140 ~~~~~~~l~~~l~~~~~~~li~~~ 163 (628)
T TIGR02316 140 GGFASHSLALRIDDATPKLIVSAD 163 (628)
T ss_pred CCCCHHHHHHHHHhcCceEEEECC
Confidence 567889999999999999988764
No 258
>PF04122 CW_binding_2: Putative cell wall binding repeat 2; InterPro: IPR007253 This repeat is found in multiple tandem copies in proteins including amidase enhancers [] and adhesins [].
Probab=41.73 E-value=1.1e+02 Score=20.76 Aligned_cols=70 Identities=21% Similarity=-0.008 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCEEEEEC-CCCChHHHHHHHHHHhCCeEeccCCCCCHHHHHHHhhhcCceEEE
Q 019348 59 QFKSIVIKVSHSFRHLGITKKDVVLIFA-PNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVI 131 (342)
Q Consensus 59 ~l~~~~~~la~~L~~~g~~~g~~V~i~~-~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi 131 (342)
+=++-+..++..+...+ .-+.|.|.. .+-++.+.+---+.+.++..++.+ +.-++.....++..+++-++
T Consensus 7 dRyeTs~~va~~~~~~~--~~~~v~ia~g~~~~Dalsa~~~a~~~~~PIll~~-~~l~~~~~~~l~~~~~~~v~ 77 (92)
T PF04122_consen 7 DRYETSAKVAKKFYPDN--KSDKVYIASGDNFADALSASPLAAKNNAPILLVN-NSLPSSVKAFLKSLNIKKVY 77 (92)
T ss_pred CHHHHHHHHHHHhcccC--CCCEEEEEeCcchhhhhhhHHHHHhcCCeEEEEC-CCCCHHHHHHHHHcCCCEEE
Confidence 33455666666654422 334455543 333444444444444577777777 54446777777776554443
No 259
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=41.53 E-value=2.9e+02 Score=29.10 Aligned_cols=98 Identities=11% Similarity=0.053 Sum_probs=65.4
Q ss_pred CCCceEEEeCC---CC----cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCh--HHHHHHHHHHhCCeEeccC
Q 019348 40 YSSKLALIDAD---SD----ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIH--FPICFLGVIAIGAIASTAN 110 (342)
Q Consensus 40 ~p~~~a~~~~~---~~----~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~--~~~~~lA~~~~G~~~v~l~ 110 (342)
.+|.++.+-.. ++ -.+|.+.+...+...... .+++++|++...+|-... +...++..+..|...+..+
T Consensus 791 ~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~---~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~ 867 (1140)
T PRK06814 791 DPDDPAVILFTSGSEGTPKGVVLSHRNLLANRAQVAAR---IDFSPEDKVFNALPVFHSFGLTGGLVLPLLSGVKVFLYP 867 (1140)
T ss_pred CCCCcEEEEECCCccCCCcEEEecHHHHHHHHHHHHHh---hCCCCcCEEEEecchHHHHHHHHHHHHHHHcCCEEEEec
Confidence 45667765332 22 467888887666655543 467889998888775433 2345667778888877666
Q ss_pred CCCCHHHHHHHhhhcCceEEEEcccchhhh
Q 019348 111 PVYTVSELSKQVKDSNPKLVITVPELWDKV 140 (342)
Q Consensus 111 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 140 (342)
.....+.+.+.+++.++.++...+.....+
T Consensus 868 ~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l 897 (1140)
T PRK06814 868 SPLHYRIIPELIYDTNATILFGTDTFLNGY 897 (1140)
T ss_pred CcccHHHHHHHHHhcCCEEEEecHHHHHHH
Confidence 555556677888899999988776555443
No 260
>PLN02861 long-chain-fatty-acid-CoA ligase
Probab=41.38 E-value=2.3e+02 Score=27.75 Aligned_cols=87 Identities=13% Similarity=0.010 Sum_probs=63.2
Q ss_pred hHhHHHHHHHhhhhhhhh-ccccCCCeEEEEccchhHHHHHHHHHHHHhhcCCeEEEc-cCCCHHHHHHHHHhccceEEE
Q 019348 211 ILTHKNFIAASLMISAHQ-ELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSM-GKFDIEMALRAIEKYRVTVWW 288 (342)
Q Consensus 211 ~~t~~~l~~~~~~~~~~~-~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~-~~~~~~~~~~~i~~~~~t~~~ 288 (342)
.+|++.+...+..+.... ..+..++|++...++-.. .++...++++..|+..+-. +.+.++.+...+++.++.+++
T Consensus 77 ~~Ty~el~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~--e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~v~ 154 (660)
T PLN02861 77 WLTYKEVYDAAIRIGSAIRSRGVNPGDRCGIYGSNCP--EWIIAMEACNSQGITYVPLYDTLGANAVEFIINHAEVSIAF 154 (660)
T ss_pred EEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCH--HHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHcCCCCEEE
Confidence 468888887765543322 234678888888777654 3436788999999987766 556789999999999999999
Q ss_pred ecHHHHHHHHc
Q 019348 289 VVPPIILALAK 299 (342)
Q Consensus 289 ~~P~~l~~l~~ 299 (342)
+....+..+..
T Consensus 155 ~~~~~~~~~~~ 165 (660)
T PLN02861 155 VQESKISSILS 165 (660)
T ss_pred ECHHHHHHHHH
Confidence 88776655543
No 261
>PLN02238 hypoxanthine phosphoribosyltransferase
Probab=41.20 E-value=85 Score=25.04 Aligned_cols=45 Identities=9% Similarity=-0.006 Sum_probs=29.8
Q ss_pred cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHH
Q 019348 53 ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLG 98 (342)
Q Consensus 53 ~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA 98 (342)
.-+||.|+.+++.++|..+.+. .+....+.+...++--.++..++
T Consensus 10 ~lis~~~I~~~i~~lA~~I~~~-~~~~~~vivgi~~Gg~~fa~~L~ 54 (189)
T PLN02238 10 VLWTAEDISARVAELAAQIASD-YAGKSPVVLGVATGAFMFLADLV 54 (189)
T ss_pred EEcCHHHHHHHHHHHHHHHHHH-cCCCCcEEEEEccCCHHHHHHHH
Confidence 3689999999999999999774 22122344555555544444444
No 262
>PRK08162 acyl-CoA synthetase; Validated
Probab=41.04 E-value=1.5e+02 Score=27.84 Aligned_cols=85 Identities=11% Similarity=0.017 Sum_probs=61.4
Q ss_pred hHhHHHHHHHhhhhhhhh-ccccCCCeEEEEccchhHHHHHHHHHHHHhhcCCeEEEcc-CCCHHHHHHHHHhccceEEE
Q 019348 211 ILTHKNFIAASLMISAHQ-ELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMG-KFDIEMALRAIEKYRVTVWW 288 (342)
Q Consensus 211 ~~t~~~l~~~~~~~~~~~-~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~ 288 (342)
.+|...+...+..+.... ..+...+|++....+-.. .++..++.++..|+..+..+ ......+...+++.+++.++
T Consensus 43 ~~ty~~L~~~~~~~a~~L~~~g~~~g~~v~i~~~~~~--~~~~~~lA~~~~G~~~vpl~~~~~~~~~~~~l~~~~~~~i~ 120 (545)
T PRK08162 43 RRTWAETYARCRRLASALARRGIGRGDTVAVLLPNIP--AMVEAHFGVPMAGAVLNTLNTRLDAASIAFMLRHGEAKVLI 120 (545)
T ss_pred EEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCch--HHHHHHHHHHHhCcEEeccccccChHHHHHHHHhCCCeEEE
Confidence 478888877655543222 223567888888777655 34367889999998877764 56789999999999999999
Q ss_pred ecHHHHHHH
Q 019348 289 VVPPIILAL 297 (342)
Q Consensus 289 ~~P~~l~~l 297 (342)
..+.....+
T Consensus 121 ~~~~~~~~~ 129 (545)
T PRK08162 121 VDTEFAEVA 129 (545)
T ss_pred EccchhhHH
Confidence 888665443
No 263
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=40.58 E-value=82 Score=27.80 Aligned_cols=62 Identities=10% Similarity=0.013 Sum_probs=45.5
Q ss_pred HHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeEeccCCCCCHHHHHHHhhhcCceEEEEcc
Q 019348 69 HSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVP 134 (342)
Q Consensus 69 ~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~ 134 (342)
+.|++.++++|++|+|..--+.-.++..+|-..- +-++.++.+. +-.+..++..++.++...
T Consensus 157 ~alk~~~~~pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~---~K~e~a~~lGAd~~i~~~ 218 (339)
T COG1064 157 RALKKANVKPGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSE---EKLELAKKLGADHVINSS 218 (339)
T ss_pred eehhhcCCCCCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCCh---HHHHHHHHhCCcEEEEcC
Confidence 4556789999999999997788888888877554 7777665433 345556677888887753
No 264
>TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway.
Probab=40.43 E-value=1.5e+02 Score=28.84 Aligned_cols=80 Identities=15% Similarity=0.068 Sum_probs=59.1
Q ss_pred hHhHHHHHHHhhhhhhhh-ccccCCCeEEEEccchhHHHHHHHHHHHHhhcCCeEEEc-cCCCHHHHHHHHHhccceEEE
Q 019348 211 ILTHKNFIAASLMISAHQ-ELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSM-GKFDIEMALRAIEKYRVTVWW 288 (342)
Q Consensus 211 ~~t~~~l~~~~~~~~~~~-~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~-~~~~~~~~~~~i~~~~~t~~~ 288 (342)
.+|++.+...+..+.... ..+..++|++...+|..--+ +..+++++..|+..+.. +.+.++.+...+++.++..++
T Consensus 114 ~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrV~i~~~n~~e~--~~~~lA~~~~Gav~vp~~~~~~~~~l~~~l~~~~~k~li 191 (652)
T TIGR01217 114 PVTWAELRRQVASLAAALRALGVRPGDRVSGYLPNIPQA--VVAMLATASVGAIWSSCSPDFGARGVLDRFQQIEPKLLF 191 (652)
T ss_pred EEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHH--HHHHHHHHHhCeEEEecCCCCCHHHHHHHHHhcCCcEEE
Confidence 468888877655543222 23467899999988886533 36688999999887766 557889999999999999988
Q ss_pred ecHH
Q 019348 289 VVPP 292 (342)
Q Consensus 289 ~~P~ 292 (342)
+...
T Consensus 192 ~~~~ 195 (652)
T TIGR01217 192 TVDG 195 (652)
T ss_pred Eccc
Confidence 7653
No 265
>KOG0257 consensus Kynurenine aminotransferase, glutamine transaminase K [Amino acid transport and metabolism]
Probab=40.28 E-value=2.9e+02 Score=25.14 Aligned_cols=91 Identities=14% Similarity=0.171 Sum_probs=56.2
Q ss_pred CCHHHHHhhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeE
Q 019348 27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA 106 (342)
Q Consensus 27 ~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~ 106 (342)
...++.+.+.+++..+.+.+... .+.+-.-||.+...+.-+.+-..-+.+.+-|.|-..-...+..+++|..-.|--+
T Consensus 43 ~~~P~fv~ea~~~~~~~~~~~qY--t~~~G~p~L~~aL~k~~se~~~~~~~~~~eVlVT~GA~~ai~~~~~~l~~~GDeV 120 (420)
T KOG0257|consen 43 FPPPKFVTEAAKNAAKEPSTNQY--TRGYGLPQLRKALAKAYSEFYGGLLDPDDEVLVTAGANEAISSALLGLLNPGDEV 120 (420)
T ss_pred CCCcHHHHHHHHHHhccchhccc--cccCCchHHHHHHHHHHHHHhccccCCcccEEEecCchHHHHHHHHHHcCCCCEE
Confidence 34556666666655555544433 3444455555544333333322333455567777777777788999999999999
Q ss_pred eccCCCCCHHHHH
Q 019348 107 STANPVYTVSELS 119 (342)
Q Consensus 107 v~l~~~~~~~~l~ 119 (342)
+.+.|.+..-.-.
T Consensus 121 ii~eP~fd~Y~~~ 133 (420)
T KOG0257|consen 121 IVFEPFFDCYIPQ 133 (420)
T ss_pred EEecCcchhhhhH
Confidence 9999988665433
No 266
>cd07100 ALDH_SSADH1_GabD1 Mycobacterium tuberculosis succinate-semialdehyde dehydrogenase 1-like. Succinate-semialdehyde dehydrogenase 1 (SSADH1, GabD1, EC=1.2.1.16) catalyzes the NADP(+)-dependent oxidation of succinate semialdehyde (SSA) to succinate. SSADH activity in Mycobacterium tuberculosis (Mtb) is encoded by both gabD1 (Rv0234c) and gabD2 (Rv1731). The Mtb GabD1 SSADH1 reportedly is an enzyme of the gamma-aminobutyrate shunt, which forms a functional link between two TCA half-cycles by converting alpha-ketoglutarate to succinate.
Probab=40.18 E-value=1.6e+02 Score=26.97 Aligned_cols=79 Identities=14% Similarity=0.015 Sum_probs=47.8
Q ss_pred CCeEEEEccchhHHHHHH-HHHHHHhhcCCeEEEccC-C---CHHHHHHHHHhcc-----ceEEEecHHHHHHHHcCCCC
Q 019348 234 LDHVVLCVLPMFHVFGLS-VILYDQLQKGNCVVSMGK-F---DIEMALRAIEKYR-----VTVWWVVPPIILALAKNSLV 303 (342)
Q Consensus 234 ~~d~~~~~~p~~~~~g~~-~~~~~~l~~G~~~v~~~~-~---~~~~~~~~i~~~~-----~t~~~~~P~~l~~l~~~~~~ 303 (342)
+-.+++...|+.+..... ..+..+|.+|.++++-+. . ....+.+++.+.+ ++++.........|+.++
T Consensus 96 P~GvV~~I~P~N~Pl~~~~~~~~~ALaaGN~VV~Kps~~~p~~~~~l~~~l~~aglP~gvv~~v~g~~~~~~~l~~~~-- 173 (429)
T cd07100 96 PLGVVLGIMPWNFPFWQVFRFAAPNLMAGNTVLLKHASNVPGCALAIEELFREAGFPEGVFQNLLIDSDQVEAIIADP-- 173 (429)
T ss_pred eeeEEEEEcCCchHHHHHHHHHHHHHHcCCEEEEECCCcchHHHHHHHHHHHHcCCCcCcEEEEeCCchhHHHHhcCC--
Confidence 445677778887765432 357899999999988643 3 3355666666642 234433344455565543
Q ss_pred CccCCCCceEEEeeccc
Q 019348 304 RKFDISSLKLVGSGAAP 320 (342)
Q Consensus 304 ~~~~l~~lr~~~~gG~~ 320 (342)
.++.+.+.|+.
T Consensus 174 ------~i~~v~fTGs~ 184 (429)
T cd07100 174 ------RVRGVTLTGSE 184 (429)
T ss_pred ------CCCEEEEECcH
Confidence 35666666644
No 267
>PRK15400 lysine decarboxylase CadA; Provisional
Probab=40.10 E-value=1e+02 Score=30.37 Aligned_cols=57 Identities=19% Similarity=0.163 Sum_probs=41.2
Q ss_pred CCCCCEEEEECCCCChHHHHHHHHHHhCCeEeccCCCC---------C-----HHHHHHHhhhc-Cce----EEEEccc
Q 019348 76 ITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVY---------T-----VSELSKQVKDS-NPK----LVITVPE 135 (342)
Q Consensus 76 ~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~---------~-----~~~l~~~l~~~-~~~----~vi~~~~ 135 (342)
+++||.|+ +-.|+...+.. |+..+|+.++-+.|.. + ++.++..++.. +++ ++|+.+.
T Consensus 232 ~~~Gd~VL-vdRN~HKSv~h--aLilsga~PVYl~P~rn~~Gi~g~I~~~~~~~e~i~~~i~~~p~ak~p~~~vit~pT 307 (714)
T PRK15400 232 APAGSTVL-IDRNCHKSLTH--LMMMSDVTPIYFRPTRNAYGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNST 307 (714)
T ss_pred cCCCCEEE-eecccHHHHHH--HHHHcCCeEEEecccccccCCccCCCccccCHHHHHHHHHhCccccCccEEEEECCC
Confidence 47899766 56888888665 9999999999998764 3 57777777654 223 6666544
No 268
>PF07994 NAD_binding_5: Myo-inositol-1-phosphate synthase; InterPro: IPR002587 1L-myo-Inositol-1-phosphate synthase (5.5.1.4 from EC) catalyzes the conversion of D-glucose 6-phosphate to 1L-myo-inositol-1-phosphate, the first committed step in the production of all inositol-containing compounds, including phospholipids, either directly or by salvage. The enzyme exists in a cytoplasmic form in a wide range of plants, animals, and fungi. It has also been detected in several bacteria and a chloroplast form is observed in alga and higher plants. Inositol phosphates play an important role in signal transduction. In Saccharomyces cerevisiae (Baker's yeast), the transcriptional regulation of the INO1 gene has been studied in detail [] and its expression is sensitive to the availability of phospholipid precursors as well as growth phase. The regulation of the structural gene encoding 1L-myo-inositol-1-phosphate synthase has also been analyzed at the transcriptional level in the aquatic angiosperm, Spirodela polyrrhiza (Giant duckweed) and the halophyte, Mesembryanthemum crystallinum (Common ice plant) [].; GO: 0004512 inositol-3-phosphate synthase activity, 0006021 inositol biosynthetic process, 0008654 phospholipid biosynthetic process; PDB: 1GR0_A 1P1K_B 1LA2_B 1RM0_B 1P1I_B 1JKF_A 1P1F_A 1P1J_B 1JKI_B 1P1H_A ....
Probab=39.33 E-value=2.6e+02 Score=24.27 Aligned_cols=70 Identities=11% Similarity=0.127 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCh----------------------------HHHHHHHHHHhCCeEec
Q 019348 57 FSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIH----------------------------FPICFLGVIAIGAIAST 108 (342)
Q Consensus 57 y~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~----------------------------~~~~~lA~~~~G~~~v~ 108 (342)
..++.+....+..+++++|+. ..|.|.+-+... ..+..+|++..|+.++.
T Consensus 128 ~~~~e~~~~DI~~f~~~~~~d--~vVvvn~asTE~~~~~~~~~~~t~~~l~~al~~~~~~~~aS~~YA~AAl~~g~~fvN 205 (295)
T PF07994_consen 128 REQVEQIREDIRDFKKENGLD--RVVVVNVASTERYIPVIPGVHDTLEALEKALDENDPEISASMLYAYAALEAGVPFVN 205 (295)
T ss_dssp HHHHHHHHHHHHHHHHHTT-S--CEEEEE-SSCC-S---CCCCCSSHHHHHHHHHTT-TTHHHHHHHHHHHHHTTEEEEE
T ss_pred HHHHHHHHHHHHHHHHHhCCC--cEEEEECCCCCCCCCCCccccCCHHHHHHHhhcCCCcCChHHHHHHHHHHCCCCeEe
Confidence 444555566688888888764 355555544433 34667889999999999
Q ss_pred cCCCCCH--HHHHHHhhhcCce
Q 019348 109 ANPVYTV--SELSKQVKDSNPK 128 (342)
Q Consensus 109 l~~~~~~--~~l~~~l~~~~~~ 128 (342)
.-|.... ..+.++.++.+.-
T Consensus 206 ~tP~~~a~~P~l~ela~~~gvp 227 (295)
T PF07994_consen 206 GTPSNIADDPALVELAEEKGVP 227 (295)
T ss_dssp -SSSTTTTSHHHHHHHHHHTEE
T ss_pred ccCccccCCHHHHHHHHHcCCC
Confidence 8888766 6788888877644
No 269
>PRK05939 hypothetical protein; Provisional
Probab=39.25 E-value=1.9e+02 Score=26.22 Aligned_cols=56 Identities=11% Similarity=0.115 Sum_probs=33.6
Q ss_pred CCCCCEEEEECCCCChHHHHHHHHHHhCCeEeccCCCCCHHHHHHHhhhcCceEEEEc
Q 019348 76 ITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITV 133 (342)
Q Consensus 76 ~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~ 133 (342)
+++||.|++.-+.-......+-++.+.|+.+..++.. ..+++...++. ++++|+++
T Consensus 83 l~~Gd~Vv~~~~~y~~t~~~~~~l~~~G~~v~~v~~~-d~e~l~~~l~~-~tklV~ve 138 (397)
T PRK05939 83 LRAGDHLVSSQFLFGNTNSLFGTLRGLGVEVTMVDAT-DVQNVAAAIRP-NTRMVFVE 138 (397)
T ss_pred cCCCCEEEECCCccccHHHHHHHHHhcCCEEEEECCC-CHHHHHHhCCC-CCeEEEEE
Confidence 5788987774332222223334456678887777653 45667776643 56777664
No 270
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=39.06 E-value=1.1e+02 Score=21.94 Aligned_cols=40 Identities=15% Similarity=0.309 Sum_probs=29.6
Q ss_pred HHHHHHHHcCCCCCCEEEEECCC-CChHHHHHHHHHHhCCe
Q 019348 66 KVSHSFRHLGITKKDVVLIFAPN-SIHFPICFLGVIAIGAI 105 (342)
Q Consensus 66 ~la~~L~~~g~~~g~~V~i~~~n-~~~~~~~~lA~~~~G~~ 105 (342)
.+.+.+.+.|+.+++.|.++|.. +.....+...+...|..
T Consensus 66 ~~~~~~~~~~~~~~~~vv~~c~~g~~~a~~~~~~l~~~G~~ 106 (122)
T cd01448 66 EFAELLGSLGISNDDTVVVYDDGGGFFAARAWWTLRYFGHE 106 (122)
T ss_pred HHHHHHHHcCCCCCCEEEEECCCCCccHHHHHHHHHHcCCC
Confidence 44555667788889999999988 46666667777777853
No 271
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=38.86 E-value=2.4e+02 Score=26.00 Aligned_cols=89 Identities=15% Similarity=-0.025 Sum_probs=56.5
Q ss_pred ceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCC-CCCCEEEEECCCCChHHHHHHHHHHhCCeEeccCCCCCHHHHHHH
Q 019348 43 KLALIDADSDESLSFSQFKSIVIKVSHSFRHLGI-TKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQ 121 (342)
Q Consensus 43 ~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~-~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~ 121 (342)
++.+-..+.+-+=|++.= .+..+.....+.|. .+|+.| +....+-.-...-++|...|.-+..+=|...+.+....
T Consensus 27 ~i~~K~E~~nptGS~K~R--~a~~~l~~a~~~g~~~~g~~v-v~~ssGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~ 103 (454)
T TIGR01137 27 ELLAKCEFFNPGGSVKDR--IALRMIEDAEASGRLKPGDTI-IEPTSGNTGIGLALVAAIKGYKCIIVLPEKMSNEKVDV 103 (454)
T ss_pred eEEEEEhhcCCCcchHHH--HHHHHHHHHHHcCCCCCCCEE-EEeCCcHHHHHHHHHHHHcCCeEEEEeCCCcCHHHHHH
Confidence 566665543444444332 12233333334454 677665 44566667778888899999877666665555667888
Q ss_pred hhhcCceEEEEcc
Q 019348 122 VKDSNPKLVITVP 134 (342)
Q Consensus 122 l~~~~~~~vi~~~ 134 (342)
++..++++++++.
T Consensus 104 ~~~~GA~v~~~~~ 116 (454)
T TIGR01137 104 LKALGAEIVRTPT 116 (454)
T ss_pred HHHCCCEEEEcCC
Confidence 8999999999875
No 272
>cd01561 CBS_like CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase. CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine.
Probab=38.82 E-value=2.5e+02 Score=24.02 Aligned_cols=92 Identities=9% Similarity=-0.059 Sum_probs=56.4
Q ss_pred CceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCC-CCCCEEEEECCCCChHHHHHHHHHHhCCeEeccCCCCCHHHHHH
Q 019348 42 SKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGI-TKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSK 120 (342)
Q Consensus 42 ~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~-~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~ 120 (342)
.++.+-+.+.+.+=|++.-- +..+...+.+.|. .+|+.|+ ....+-.-...-++|.+.|..++.+-|.........
T Consensus 17 ~~i~~K~E~~~ptgS~K~R~--a~~~l~~a~~~g~~~~~~~vv-~~SsGN~g~alA~~a~~~G~~~~i~vp~~~~~~k~~ 93 (291)
T cd01561 17 AEIYAKLEFFNPGGSVKDRI--ALYMIEDAEKRGLLKPGTTII-EPTSGNTGIGLAMVAAAKGYRFIIVMPETMSEEKRK 93 (291)
T ss_pred CeEEEEecccCCCCcchHHH--HHHHHHHHHHcCCCCCCCEEE-EeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHH
Confidence 35555555333333333221 2222233344453 3456554 456666777778888899987766666665566778
Q ss_pred HhhhcCceEEEEcccc
Q 019348 121 QVKDSNPKLVITVPEL 136 (342)
Q Consensus 121 ~l~~~~~~~vi~~~~~ 136 (342)
.++..++++++++...
T Consensus 94 ~~~~~Ga~v~~~~~~~ 109 (291)
T cd01561 94 LLRALGAEVILTPEAE 109 (291)
T ss_pred HHHHcCCEEEEeCCCC
Confidence 8999999999998754
No 273
>PRK09088 acyl-CoA synthetase; Validated
Probab=38.62 E-value=3.1e+02 Score=25.29 Aligned_cols=94 Identities=10% Similarity=-0.062 Sum_probs=61.9
Q ss_pred CCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhh-ccccCCCeEEEEccchhHHHHHHHHHHHHhhcCCeEEEcc
Q 019348 190 KQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQ-ELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMG 268 (342)
Q Consensus 190 ~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~-~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~ 268 (342)
.++.++++....| ..+|+..+...+..+.... ..+...+|++....+-... ++..++.++..|+..+...
T Consensus 8 ~p~~~a~~~~~~~-------~~~ty~~l~~~v~~~a~~l~~~g~~~~~~v~i~~~~~~~--~~~~~la~~~~G~~~v~~~ 78 (488)
T PRK09088 8 QPQRLAAVDLALG-------RRWTYAELDALVGRLAAVLRRRGCVDGERLAVLARNSVW--LVALHFACARVGAIYVPLN 78 (488)
T ss_pred CCCceEEEecCCC-------cEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHH--HHHHHHHHHHcCeEEEeeC
Confidence 3556665443333 2467887776654432211 2235677888877766553 3366789999998888764
Q ss_pred -CCCHHHHHHHHHhccceEEEecHH
Q 019348 269 -KFDIEMALRAIEKYRVTVWWVVPP 292 (342)
Q Consensus 269 -~~~~~~~~~~i~~~~~t~~~~~P~ 292 (342)
...++.+...+++.+++.++....
T Consensus 79 ~~~~~~~~~~~~~~~~~~~ii~~~~ 103 (488)
T PRK09088 79 WRLSASELDALLQDAEPRLLLGDDA 103 (488)
T ss_pred ccCCHHHHHHHHHhCCCCEEEEcch
Confidence 567888999999999999877653
No 274
>PRK08974 long-chain-fatty-acid--CoA ligase; Validated
Probab=38.40 E-value=1.8e+02 Score=27.47 Aligned_cols=81 Identities=15% Similarity=0.196 Sum_probs=57.8
Q ss_pred hHhHHHHHHHhhhhhhhhc--cccCCCeEEEEccchhHHHHHHHHHHHHhhcCCeEEEcc-CCCHHHHHHHHHhccceEE
Q 019348 211 ILTHKNFIAASLMISAHQE--LVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMG-KFDIEMALRAIEKYRVTVW 287 (342)
Q Consensus 211 ~~t~~~l~~~~~~~~~~~~--~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~~ 287 (342)
.+|...+...+..+..... .+...++++....+-. ..+...++.++..|+..+..+ ...+..+...+++.+++.+
T Consensus 48 ~lTy~~l~~~~~~la~~L~~~~g~~~g~~V~i~~~~~--~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~i 125 (560)
T PRK08974 48 VMTFRKLEERSRAFAAYLQNGLGLKKGDRVALMMPNL--LQYPIALFGILRAGMIVVNVNPLYTPRELEHQLNDSGAKAI 125 (560)
T ss_pred cccHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCC--HHHHHHHHHHHHcCcEEeccCccCCHHHHHHHHHhcCceEE
Confidence 5688888776555443332 3456778877776554 334367789999999988764 4678889999999999998
Q ss_pred EecHHH
Q 019348 288 WVVPPI 293 (342)
Q Consensus 288 ~~~P~~ 293 (342)
.+.+..
T Consensus 126 i~~~~~ 131 (560)
T PRK08974 126 VIVSNF 131 (560)
T ss_pred EEeccc
Confidence 876643
No 275
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=38.18 E-value=83 Score=26.55 Aligned_cols=72 Identities=8% Similarity=0.057 Sum_probs=50.1
Q ss_pred CCEEEEECCCCChHHHHHHHHHHhCC---eEeccCCCCCHHHHHHHhhhcCceEEEEccc--------chhhhhccCCCe
Q 019348 79 KDVVLIFAPNSIHFPICFLGVIAIGA---IASTANPVYTVSELSKQVKDSNPKLVITVPE--------LWDKVKDLNLPA 147 (342)
Q Consensus 79 g~~V~i~~~n~~~~~~~~lA~~~~G~---~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~--------~~~~~~~~~~~~ 147 (342)
+.++.+-.-+..+.+. .|..+|. -.+.+.+..+.+.-..++++.+++++++=+. ......+++.++
T Consensus 150 ~~~~~~RvLP~~~~l~---~~~~~G~~~~~iia~~gPfs~e~n~al~~~~~i~~lVtK~SG~~Gg~~eKi~AA~~lgi~v 226 (256)
T TIGR00715 150 EAVVFVRVLPYPQALA---QALKLGFPSDRIIAMRGPFSEELEKALLREYRIDAVVTKASGEQGGELEKVKAAEALGINV 226 (256)
T ss_pred CceEEEEECCCchhhH---HHHHcCCChhcEEEEeCCCCHHHHHHHHHHcCCCEEEEcCCCCccchHHHHHHHHHcCCcE
Confidence 4455554444555555 5666665 3778888899998899999999999998432 233455667888
Q ss_pred EEecCC
Q 019348 148 VLLGSK 153 (342)
Q Consensus 148 ~~~~~~ 153 (342)
+.+...
T Consensus 227 ivI~RP 232 (256)
T TIGR00715 227 IRIARP 232 (256)
T ss_pred EEEeCC
Confidence 888755
No 276
>PRK07476 eutB threonine dehydratase; Provisional
Probab=38.08 E-value=2.1e+02 Score=25.07 Aligned_cols=53 Identities=11% Similarity=0.033 Sum_probs=39.6
Q ss_pred EECCCCChHHHHHHHHHHhCCeEeccCCCCCHHHHHHHhhhcCceEEEEcccc
Q 019348 84 IFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPEL 136 (342)
Q Consensus 84 i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~ 136 (342)
+....+-.-..+-++|...|.-++.+-|...+......++..++++++++...
T Consensus 71 v~aSsGN~g~alA~~a~~~G~~~~i~vp~~~~~~k~~~~~~~GA~V~~~~~~~ 123 (322)
T PRK07476 71 VTASTGNHGRALAYAARALGIRATICMSRLVPANKVDAIRALGAEVRIVGRSQ 123 (322)
T ss_pred EEECCChHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHcCCEEEEECCCH
Confidence 33455666777778888999876666666666667788899999999998643
No 277
>PRK06087 short chain acyl-CoA synthetase; Reviewed
Probab=38.05 E-value=3.5e+02 Score=25.46 Aligned_cols=90 Identities=17% Similarity=0.135 Sum_probs=59.1
Q ss_pred CCCceEEEeCCC---C----cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCh--HHHHHHHHHHhCCeEeccC
Q 019348 40 YSSKLALIDADS---D----ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIH--FPICFLGVIAIGAIASTAN 110 (342)
Q Consensus 40 ~p~~~a~~~~~~---~----~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~--~~~~~lA~~~~G~~~v~l~ 110 (342)
.++.++++...+ + -.+|.+.+...+.. .....++.++|++....|-... ++..+++.+..|+..+...
T Consensus 185 ~~~d~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~---~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~g~~~~~~~ 261 (547)
T PRK06087 185 HGDELAAVLFTSGTEGLPKGVMLTHNNILASERA---YCARLNLTWQDVFMMPAPLGHATGFLHGVTAPFLIGARSVLLD 261 (547)
T ss_pred CCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHH---HHHhcCCCCCCeEEEecchHHHHHHHHHHHHHHhcCCEEEecC
Confidence 345666654322 2 35677777655443 2334577889988777665533 3456677788888877765
Q ss_pred CCCCHHHHHHHhhhcCceEEEEc
Q 019348 111 PVYTVSELSKQVKDSNPKLVITV 133 (342)
Q Consensus 111 ~~~~~~~l~~~l~~~~~~~vi~~ 133 (342)
....+.+...+++.++.+++..
T Consensus 262 -~~~~~~~~~~i~~~~~t~~~~~ 283 (547)
T PRK06087 262 -IFTPDACLALLEQQRCTCMLGA 283 (547)
T ss_pred -CCCHHHHHHHHHHcCCCEEecc
Confidence 4567778888999999988754
No 278
>PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates []. One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D.
Probab=38.00 E-value=81 Score=28.80 Aligned_cols=59 Identities=24% Similarity=0.331 Sum_probs=39.0
Q ss_pred CCCCCEEEEECCCCChHHHHHHHHHHhCCeEeccCCC---------CCH-----HHHHHHhhhcCc-e----EEEEcccc
Q 019348 76 ITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPV---------YTV-----SELSKQVKDSNP-K----LVITVPEL 136 (342)
Q Consensus 76 ~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~---------~~~-----~~l~~~l~~~~~-~----~vi~~~~~ 136 (342)
+++||.|++ -.|+...+.. |+..+|+.++-|+|. .+. +.+.+.++.... + ++|+.+..
T Consensus 103 ~~~gd~VLv-~RN~HkSv~~--alil~ga~Pvyi~p~~~~~gi~~~i~~~~~~~~~i~~~l~~~p~~k~~~~vvlt~PTY 179 (417)
T PF01276_consen 103 CRPGDKVLV-DRNCHKSVYN--ALILSGAIPVYIPPEDNEYGIIGGISPDEFNEEDIEEALKEHPDAKAPRLVVLTSPTY 179 (417)
T ss_dssp TTTTCEEEE-ETT--HHHHH--HHHHHTEEEEEEEEEE-TTS-BEEB-GGGGSHHHHHHHHHHCTTCHCESEEEEESS-T
T ss_pred cCCCCEEEE-cCCcHHHHHH--HHHHcCCeEEEecCCccccCCccCCChhhhhHHHHHHHHHhCccccCceEEEEeCCCC
Confidence 368998665 5888887776 999999999988774 233 778888876532 2 45665544
Q ss_pred h
Q 019348 137 W 137 (342)
Q Consensus 137 ~ 137 (342)
.
T Consensus 180 ~ 180 (417)
T PF01276_consen 180 Y 180 (417)
T ss_dssp T
T ss_pred C
Confidence 3
No 279
>cd07147 ALDH_F21_RNP123 Aldehyde dehydrogenase family 21A1-like. Aldehyde dehydrogenase ALDH21A1 (gene name RNP123) was first described in the moss Tortula ruralis and is believed to play an important role in the detoxification of aldehydes generated in response to desiccation- and salinity-stress, and ALDH21A1 expression represents a unique stress tolerance mechanism. So far, of plants, only the bryophyte sequence has been observed, but similar protein sequences from bacteria and archaea are also present in this CD.
Probab=37.57 E-value=1.4e+02 Score=27.52 Aligned_cols=79 Identities=13% Similarity=0.026 Sum_probs=45.3
Q ss_pred CCeEEEEccchhHHHHHHH-HHHHHhhcCCeEEEccC-C---CHHHHHHHHHhcc-----ceEEEecHHHHHHHHcCCCC
Q 019348 234 LDHVVLCVLPMFHVFGLSV-ILYDQLQKGNCVVSMGK-F---DIEMALRAIEKYR-----VTVWWVVPPIILALAKNSLV 303 (342)
Q Consensus 234 ~~d~~~~~~p~~~~~g~~~-~~~~~l~~G~~~v~~~~-~---~~~~~~~~i~~~~-----~t~~~~~P~~l~~l~~~~~~ 303 (342)
+-.+++...|+.+...+.. .+..+|.+|.++++-+. . ....+.+++++.+ ++++.........|+.++
T Consensus 123 P~Gvv~~I~p~N~P~~~~~~~~~~ALaaGN~VIlKps~~~p~~~~~l~~~l~~ag~P~g~v~~v~g~~~~~~~l~~~~-- 200 (452)
T cd07147 123 PIGPVSAITPFNFPLNLVAHKVAPAIAAGCPFVLKPASRTPLSALILGEVLAETGLPKGAFSVLPCSRDDADLLVTDE-- 200 (452)
T ss_pred ceeEEEEEcCCCcHHHHHHHHHHHHHHcCCEEEEECCCCCcHHHHHHHHHHHHcCCCcCcEEEEeCCccchhHHhcCC--
Confidence 3456666677766654422 37889999999888643 3 3455666666652 233333233444555443
Q ss_pred CccCCCCceEEEeeccc
Q 019348 304 RKFDISSLKLVGSGAAP 320 (342)
Q Consensus 304 ~~~~l~~lr~~~~gG~~ 320 (342)
.++.+.++|+.
T Consensus 201 ------~v~~v~fTGs~ 211 (452)
T cd07147 201 ------RIKLLSFTGSP 211 (452)
T ss_pred ------CCCEEEEECCH
Confidence 36667666643
No 280
>cd07050 BMC_EutL_repeat2 ethanolamine utilization protein S (EutS), Bacterial Micro-Compartment (BMC) domain repeat 2. EutL proteins are homologs of the carboxysome shell protein. They are encoded within the eut operon and might be required for the formation of the outer shell of the bacterial eut polyhedral organelles which are involved in the cobalamin-dependent degradation of ethanolamine. Although it has been suggested that EutL might form hexamers and further assemble into the flat facets of the polyhedral outer shell of eut organelles at present no experimental evidence directly supports this view. EutL proteins contain two tandem BMC domains. This CD includes domain 2 (the second BMC domain of EutL).
Probab=37.49 E-value=55 Score=21.79 Aligned_cols=40 Identities=5% Similarity=0.100 Sum_probs=32.9
Q ss_pred HHHHHH-cCCCCCCEEEEECCCCChHHHHHHHHHHhCCeEe
Q 019348 68 SHSFRH-LGITKKDVVLIFAPNSIHFPICFLGVIAIGAIAS 107 (342)
Q Consensus 68 a~~L~~-~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v 107 (342)
..+|.+ .|++.|+.++.+..+..|.+..+=|++++.-+-+
T Consensus 3 GsYls~~agi~eGe~lAYLIapPlEa~y~lDaALKAAdV~~ 43 (87)
T cd07050 3 GSYLSKTAGIAEGEALAYLIAPPLEAMYGLDAALKAADVEL 43 (87)
T ss_pred chhhHHhcCCCCCCeeeeeecCcHHHHHHHHHHHHhhceee
Confidence 456754 4999999999999999999999999999876543
No 281
>PRK08276 long-chain-fatty-acid--CoA ligase; Validated
Probab=37.37 E-value=2.8e+02 Score=25.69 Aligned_cols=84 Identities=13% Similarity=0.056 Sum_probs=57.6
Q ss_pred HhHHHHHHHhhhhhhh-hccccCCCeEEEEccchhHHHHHHHHHHHHhhcCCeEEEcc-CCCHHHHHHHHHhccceEEEe
Q 019348 212 LTHKNFIAASLMISAH-QELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMG-KFDIEMALRAIEKYRVTVWWV 289 (342)
Q Consensus 212 ~t~~~l~~~~~~~~~~-~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~ 289 (342)
+|..++...+..+... ...+...+|++....+-.... +..++.++..|+..+..+ .+....+...+++.++..++.
T Consensus 12 ~ty~el~~~v~~~a~~L~~~g~~~~~~V~i~~~~~~~~--~~~~la~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~ii~ 89 (502)
T PRK08276 12 VTYGELEARSNRLAHGLRALGLREGDVVAILLENNPEF--FEVYWAARRSGLYYTPINWHLTAAEIAYIVDDSGAKVLIV 89 (502)
T ss_pred EEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHH--HHHHHHHHhcCcEEEecccccCHHHHHHHHhcCCCCEEEE
Confidence 5666665554433221 122356788888877665432 267899999999888764 467788889999999999988
Q ss_pred cHHHHHHH
Q 019348 290 VPPIILAL 297 (342)
Q Consensus 290 ~P~~l~~l 297 (342)
.+.....+
T Consensus 90 ~~~~~~~~ 97 (502)
T PRK08276 90 SAALADTA 97 (502)
T ss_pred ccchhhHH
Confidence 87666544
No 282
>PRK10595 SOS cell division inhibitor; Provisional
Probab=37.36 E-value=1.4e+02 Score=23.18 Aligned_cols=38 Identities=11% Similarity=0.103 Sum_probs=22.8
Q ss_pred HHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCe
Q 019348 68 SHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAI 105 (342)
Q Consensus 68 a~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~ 105 (342)
+.+|.+.|+..+..+.|--.+..+.+-++-=|+++|..
T Consensus 70 ~~~L~~~Gl~l~rvl~v~~~~~~d~Lwa~EqaLrsG~~ 107 (164)
T PRK10595 70 REWLQASGLPLTKVMQLSQLSPCHTVEAMERALRTGNY 107 (164)
T ss_pred HHHHHHcCCCcccEEEEecCCcHHHHHHHHHHHhhCCC
Confidence 45566667765555545445555666666666666653
No 283
>PRK03584 acetoacetyl-CoA synthetase; Provisional
Probab=37.36 E-value=1.8e+02 Score=28.30 Aligned_cols=68 Identities=10% Similarity=0.044 Sum_probs=48.7
Q ss_pred HcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeEeccCC---CCCHHHHHHHhhhcCceEEEEcccchhhh
Q 019348 73 HLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANP---VYTVSELSKQVKDSNPKLVITVPELWDKV 140 (342)
Q Consensus 73 ~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~---~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 140 (342)
..++.++|++....+.+......+++.+..|+..+..+. ....+.+.+++++.++..+.+.+.....+
T Consensus 299 ~~~~~~~d~~~~~~~~~~~~~~~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l 369 (655)
T PRK03584 299 HCDLGPGDRFFWYTTCGWMMWNWLVSGLLVGATLVLYDGSPFYPDPNVLWDLAAEEGVTVFGTSAKYLDAC 369 (655)
T ss_pred hcCCCCCCEEEEcCCchHHhHHHHHHHHHcCCEEEEeCCCCCCCCHHHHHHHHHHHCCEEEEcCHHHHHHH
Confidence 347788998876666554444456788999998877653 23567888999999999988776655544
No 284
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=37.25 E-value=3e+02 Score=26.07 Aligned_cols=46 Identities=7% Similarity=0.048 Sum_probs=26.7
Q ss_pred CCCEEEEECCCCChHHHHHHHHHHhCCeEeccCCCCC----HHHHHHHhhh
Q 019348 78 KKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYT----VSELSKQVKD 124 (342)
Q Consensus 78 ~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~----~~~l~~~l~~ 124 (342)
.|.+++|..+....+-++-+-. .+|..++.+-.... .+++..+++.
T Consensus 362 ~GKrvaI~gdpd~~~~l~~fL~-ElGmepv~v~~~~~~~~~~~~l~~ll~~ 411 (515)
T TIGR01286 362 HGKRFAIYGDPDFVMGLVRFVL-ELGCEPVHILCTNGTKRWKAEMKALLAA 411 (515)
T ss_pred cCceEEEECCHHHHHHHHHHHH-HCCCEEEEEEeCCCCHHHHHHHHHHHhc
Confidence 5788999886654444333433 78887665543333 3445555554
No 285
>cd00615 Orn_deC_like Ornithine decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.
Probab=36.98 E-value=1.8e+02 Score=24.89 Aligned_cols=55 Identities=18% Similarity=0.247 Sum_probs=35.2
Q ss_pred CCCCCEEEEECCCCChHHHHHHHHHHhCCeEeccCCC----------CCHHHHHHHhhh-cCceEEEEc
Q 019348 76 ITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPV----------YTVSELSKQVKD-SNPKLVITV 133 (342)
Q Consensus 76 ~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~----------~~~~~l~~~l~~-~~~~~vi~~ 133 (342)
+++||.|.+.- ++ +...+-++...|+.++.+++. .+.+++.+.++. -++++++..
T Consensus 96 ~~~gd~Vlv~~-~~--h~s~~~~~~~~g~~~~~v~~~~~~~~~~~~~i~~~~l~~~l~~~~~~k~v~l~ 161 (294)
T cd00615 96 CGPGDKILIDR-NC--HKSVINGLVLSGAVPVYLKPERNPYYGIAGGIPPETFKKALIEHPDAKAAVIT 161 (294)
T ss_pred CCCCCEEEEeC-Cc--hHHHHHHHHHCCCEEEEecCccCcccCcCCCCCHHHHHHHHHhCCCceEEEEE
Confidence 46899887763 33 333455666788877766543 456778888764 456766554
No 286
>PRK06381 threonine synthase; Validated
Probab=36.93 E-value=1.2e+02 Score=26.36 Aligned_cols=88 Identities=10% Similarity=-0.042 Sum_probs=56.2
Q ss_pred ceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeEeccCCCCCHHHHHHHh
Q 019348 43 KLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQV 122 (342)
Q Consensus 43 ~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l 122 (342)
++.+-..+.+-+=||++ +.+..+...+++.|. +.| +....+-.-..+-++|...|.-++.+=|...+......+
T Consensus 32 ~i~~K~E~~nptGS~K~--R~a~~~l~~a~~~g~---~~l-v~aSsGN~g~alA~~aa~~G~~~~ivvp~~~~~~~~~~l 105 (319)
T PRK06381 32 KIYLKFEGANPTGTQKD--RIAEAHVRRAMRLGY---SGI-TVGTCGNYGASIAYFARLYGLKAVIFIPRSYSNSRVKEM 105 (319)
T ss_pred eEEEEecCCCCccCcHH--HHHHHHHHHHHHcCC---CEE-EEeCCcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHH
Confidence 56666664444455554 222333333445452 334 445667777788888889998766655555555667789
Q ss_pred hhcCceEEEEcccc
Q 019348 123 KDSNPKLVITVPEL 136 (342)
Q Consensus 123 ~~~~~~~vi~~~~~ 136 (342)
+..++++++++.+.
T Consensus 106 ~~~GA~V~~~~~~~ 119 (319)
T PRK06381 106 EKYGAEIIYVDGKY 119 (319)
T ss_pred HHcCCEEEEcCCCH
Confidence 99999999998654
No 287
>KOG1179 consensus Very long-chain acyl-CoA synthetase/fatty acid transporter [Lipid transport and metabolism]
Probab=36.91 E-value=1.6e+02 Score=28.02 Aligned_cols=75 Identities=16% Similarity=0.248 Sum_probs=55.5
Q ss_pred ceeHHHHHHHHHHHHH-HHHHcCCCCCCEEEEECC--CCChHHHHHHHHHHhCCeEeccCCCCCHHHHHHHhhhcCceEE
Q 019348 54 SLSFSQFKSIVIKVSH-SFRHLGITKKDVVLIFAP--NSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLV 130 (342)
Q Consensus 54 ~~Ty~~l~~~~~~la~-~L~~~g~~~g~~V~i~~~--n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~v 130 (342)
.+|.... -+.+. ...-.|+.+.|+|-+.+| .+.-.++-+-+|+..|+.+| |..+.+++.+=.-+.+.++.++
T Consensus 261 vith~r~----~~~a~g~~~~~g~~~~DvvY~~lPLYHsaa~ilGi~~~l~~GaT~V-lrkKFSAS~FW~DC~k~~~Tv~ 335 (649)
T KOG1179|consen 261 VITHLRY----LQGAAGFYYVFGMTADDVVYTTLPLYHSAAGILGIGGCLLHGATVV-LRKKFSASNFWDDCRKYNVTVI 335 (649)
T ss_pred HHHHHHH----HHHHHHHHHHhCCCccceEEEcchhHHHHHHHHHHHHHHhcCceEE-EecccchhhhHHHHHHhCCeee
Confidence 4555444 44444 335559999999999987 45677788889999999876 7789999888777888887777
Q ss_pred EEc
Q 019348 131 ITV 133 (342)
Q Consensus 131 i~~ 133 (342)
-.-
T Consensus 336 QYI 338 (649)
T KOG1179|consen 336 QYI 338 (649)
T ss_pred ehH
Confidence 543
No 288
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=36.87 E-value=52 Score=22.16 Aligned_cols=42 Identities=14% Similarity=0.165 Sum_probs=29.7
Q ss_pred ceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCC------CCCCEEEEEC
Q 019348 43 KLALIDADSDESLSFSQFKSIVIKVSHSFRHLGI------TKKDVVLIFA 86 (342)
Q Consensus 43 ~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~------~~g~~V~i~~ 86 (342)
.+.+..- +..+||.+|.++++.+.+..+.+.+ ..||.+.+-.
T Consensus 10 di~it~~--d~~~s~e~L~~~v~~~c~~~~~q~ft~kw~DEEGDp~tiSS 57 (83)
T cd06404 10 DIMITSI--DPSISLEELCNEVRDMCRFHNDQPFTLKWIDEEGDPCTISS 57 (83)
T ss_pred cEEEEEc--CCCcCHHHHHHHHHHHhCCCCCCcEEEEEECCCCCceeecC
Confidence 3444444 5589999999999999998876543 2577776643
No 289
>PTZ00216 acyl-CoA synthetase; Provisional
Probab=36.83 E-value=3.8e+02 Score=26.41 Aligned_cols=90 Identities=8% Similarity=-0.057 Sum_probs=65.0
Q ss_pred hhhHhHHHHHHHhhhhhhhh-ccccCCCeEEEEccchhHHHHHHHHHHHHhhcCCeEEEc-cCCCHHHHHHHHHhccceE
Q 019348 209 GVILTHKNFIAASLMISAHQ-ELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSM-GKFDIEMALRAIEKYRVTV 286 (342)
Q Consensus 209 ~v~~t~~~l~~~~~~~~~~~-~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~-~~~~~~~~~~~i~~~~~t~ 286 (342)
...+|++.+...+..+.... ..+..++|++...++-.. .++...++++..|+..+-. ..+.++.+...+++.++..
T Consensus 119 ~~~lTy~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~--e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~ 196 (700)
T PTZ00216 119 TRYITYAELWERIVNFGRGLAELGLTKGSNVAIYEETRW--EWLASIYGIWSQSMVAATVYANLGEDALAYALRETECKA 196 (700)
T ss_pred ceEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCH--HHHHHHHHHHHcCCeEEeeCCCCCHHHHHhhhhccCccE
Confidence 45678888887766543222 234568888888777643 4446788999999876654 5678899999999999999
Q ss_pred EEecHHHHHHHHcC
Q 019348 287 WWVVPPIILALAKN 300 (342)
Q Consensus 287 ~~~~P~~l~~l~~~ 300 (342)
+++....+..+...
T Consensus 197 lv~~~~~~~~l~~~ 210 (700)
T PTZ00216 197 IVCNGKNVPNLLRL 210 (700)
T ss_pred EEECHHHHHHHHHh
Confidence 99988776665543
No 290
>KOG1250 consensus Threonine/serine dehydratases [Amino acid transport and metabolism]
Probab=36.75 E-value=2.3e+02 Score=25.69 Aligned_cols=54 Identities=13% Similarity=0.105 Sum_probs=45.2
Q ss_pred EECCCCChHHHHHHHHHHhCCeEeccCCCCCHHHHHHHhhhcCceEEEEcccch
Q 019348 84 IFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELW 137 (342)
Q Consensus 84 i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~ 137 (342)
+++.-+-....+.+++.++|..+..+=|..++...-+.++..++.+++......
T Consensus 118 iasSaGNha~a~Ayaa~~LgipaTIVmP~~tp~~kiq~~~nlGA~Vil~G~~~d 171 (457)
T KOG1250|consen 118 IASSAGNHAQAAAYAARKLGIPATIVMPVATPLMKIQRCRNLGATVILSGEDWD 171 (457)
T ss_pred EEecCccHHHHHHHHHHhcCCceEEEecCCChHHHHHHHhccCCEEEEecccHH
Confidence 455556677888899999999988888999999999999999999999865543
No 291
>PLN02419 methylmalonate-semialdehyde dehydrogenase [acylating]
Probab=36.68 E-value=2.2e+02 Score=27.61 Aligned_cols=79 Identities=9% Similarity=-0.001 Sum_probs=50.2
Q ss_pred CCeEEEEccchhHHHHHHHH-HHHHhhcCCeEEEccC-CC---HHHHHHHHHhcc-----ceEEEecHHHHHHHHcCCCC
Q 019348 234 LDHVVLCVLPMFHVFGLSVI-LYDQLQKGNCVVSMGK-FD---IEMALRAIEKYR-----VTVWWVVPPIILALAKNSLV 303 (342)
Q Consensus 234 ~~d~~~~~~p~~~~~g~~~~-~~~~l~~G~~~v~~~~-~~---~~~~~~~i~~~~-----~t~~~~~P~~l~~l~~~~~~ 303 (342)
+-.+++...|+.+...+... +..+|.+|.++++=+. .. ...+.+++.+.+ ++++.+....-..|+.++
T Consensus 249 P~GVV~~I~PwNfPl~l~~~~iapALaAGNtVVlKPSe~tp~ta~~l~~l~~eAGlP~GvvnvV~G~~~~~~~L~~~~-- 326 (604)
T PLN02419 249 PLGVCAGICPFNFPAMIPLWMFPVAVTCGNTFILKPSEKDPGASVILAELAMEAGLPDGVLNIVHGTNDTVNAICDDE-- 326 (604)
T ss_pred CccEEEEECCCccHHHHHHHHHHHHHHcCCEEEEeCCCCCcHHHHHHHHHHHHhCcCcceEEEEeCChHHHHHHHhCC--
Confidence 45678888998887766443 6679999999998643 33 345566666653 344444344556666554
Q ss_pred CccCCCCceEEEeeccc
Q 019348 304 RKFDISSLKLVGSGAAP 320 (342)
Q Consensus 304 ~~~~l~~lr~~~~gG~~ 320 (342)
.++.+.++|+.
T Consensus 327 ------~Vd~V~FTGSt 337 (604)
T PLN02419 327 ------DIRAVSFVGSN 337 (604)
T ss_pred ------CCCEEEEeCCh
Confidence 45666766644
No 292
>PF00455 DeoRC: DeoR C terminal sensor domain; InterPro: IPR014036 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism. This family of prokaryotic regulators is named after Escherichia coli deoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerization domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].
Probab=36.66 E-value=1.2e+02 Score=23.40 Aligned_cols=57 Identities=14% Similarity=0.123 Sum_probs=40.4
Q ss_pred hhcCCeEEEccCCCHHHHHHHHHhc-cceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCC
Q 019348 258 LQKGNCVVSMGKFDIEMALRAIEKY-RVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLG 322 (342)
Q Consensus 258 l~~G~~~v~~~~~~~~~~~~~i~~~-~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~ 322 (342)
+--|.++.+-.......+.+.|.+. ++|++--...+...|.+.+ ..+.++.||..-+
T Consensus 17 I~~~~~Ifld~GtT~~~la~~L~~~~~ltVvTnsl~ia~~l~~~~--------~~~vi~~GG~~~~ 74 (161)
T PF00455_consen 17 IEDGDTIFLDSGTTTLELAKYLPDKKNLTVVTNSLPIANELSENP--------NIEVILLGGEVNP 74 (161)
T ss_pred CCCCCEEEEECchHHHHHHHHhhcCCceEEEECCHHHHHHHHhcC--------ceEEEEeCCEEEc
Confidence 4455566655666778888888877 7888877778888887654 5777778885543
No 293
>PRK07788 acyl-CoA synthetase; Validated
Probab=36.58 E-value=1.5e+02 Score=28.04 Aligned_cols=84 Identities=8% Similarity=0.077 Sum_probs=57.0
Q ss_pred cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChH-HHHHHHHHHhCCeEeccCCCCCHHHHHHHhhhcCceEEE
Q 019348 53 ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHF-PICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVI 131 (342)
Q Consensus 53 ~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~-~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi 131 (342)
-.+|.+.+...+. ......++.++|++....|-...+ +..+++++..|+..+.. ....++++...+++.++..+.
T Consensus 225 v~~s~~~~~~~~~---~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~-~~~~~~~~~~~i~~~~vt~~~ 300 (549)
T PRK07788 225 APRPEPSPLAPLA---GLLSRVPFRAGETTLLPAPMFHATGWAHLTLAMALGSTVVLR-RRFDPEATLEDIAKHKATALV 300 (549)
T ss_pred EeccCccHHHHHH---HHHhhCCCCcCCeEEEccchHHHHHHHHHHHHHHhCCEEEEC-CCCCHHHHHHHHHHhCCcEEE
Confidence 3456665554433 334455788899887776654333 23356677888877665 556778899999999999999
Q ss_pred Ecccchhhh
Q 019348 132 TVPELWDKV 140 (342)
Q Consensus 132 ~~~~~~~~~ 140 (342)
..+.....+
T Consensus 301 ~~P~~~~~l 309 (549)
T PRK07788 301 VVPVMLSRI 309 (549)
T ss_pred EHHHHHHHH
Confidence 987766554
No 294
>cd07085 ALDH_F6_MMSDH Methylmalonate semialdehyde dehydrogenase and ALDH family members 6A1 and 6B2. Methylmalonate semialdehyde dehydrogenase (MMSDH, EC=1.2.1.27) [acylating] from Bacillus subtilis is involved in valine metabolism and catalyses the NAD+- and CoA-dependent oxidation of methylmalonate semialdehyde into propionyl-CoA. Mitochondrial human MMSDH ALDH6A1 and Arabidopsis MMSDH ALDH6B2 are also present in this CD.
Probab=36.33 E-value=2.2e+02 Score=26.59 Aligned_cols=79 Identities=14% Similarity=0.004 Sum_probs=48.9
Q ss_pred CCeEEEEccchhHHHHHH-HHHHHHhhcCCeEEEccC-C---CHHHHHHHHHhcc-----ceEEEecHHHHHHHHcCCCC
Q 019348 234 LDHVVLCVLPMFHVFGLS-VILYDQLQKGNCVVSMGK-F---DIEMALRAIEKYR-----VTVWWVVPPIILALAKNSLV 303 (342)
Q Consensus 234 ~~d~~~~~~p~~~~~g~~-~~~~~~l~~G~~~v~~~~-~---~~~~~~~~i~~~~-----~t~~~~~P~~l~~l~~~~~~ 303 (342)
+--++....|+.+..... ..+..+|.+|.++++-+. . ....+.+++.+.+ ++++.........|++++
T Consensus 136 P~GVv~~I~p~N~P~~~~~~~i~~ALaaGN~VvlKps~~tp~~~~~l~~~l~~aGlP~gvv~~v~g~~~~~~~L~~~~-- 213 (478)
T cd07085 136 PLGVVAGITPFNFPAMIPLWMFPMAIACGNTFVLKPSERVPGAAMRLAELLQEAGLPDGVLNVVHGGKEAVNALLDHP-- 213 (478)
T ss_pred cceEEEEECCCChHHHHHHHHHHHHHhcCCEEEEECCCcCcHHHHHHHHHHHHhCCCCCcEEEEecCHHHHHHHhcCC--
Confidence 335777888877665442 347789999999888643 2 3456667776642 334443344556666654
Q ss_pred CccCCCCceEEEeeccc
Q 019348 304 RKFDISSLKLVGSGAAP 320 (342)
Q Consensus 304 ~~~~l~~lr~~~~gG~~ 320 (342)
.++.+.++|+.
T Consensus 214 ------~v~~V~fTGs~ 224 (478)
T cd07085 214 ------DIKAVSFVGST 224 (478)
T ss_pred ------CcCEEEEECCH
Confidence 35666666644
No 295
>TIGR01138 cysM cysteine synthase B. Alternate name: O-acetylserine (thiol)-lyase
Probab=36.32 E-value=2.8e+02 Score=23.83 Aligned_cols=89 Identities=12% Similarity=0.036 Sum_probs=55.6
Q ss_pred ceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcC-CCCCCEEEEECCCCChHHHHHHHHHHhCCeEeccCCCCCHHHHHHH
Q 019348 43 KLALIDADSDESLSFSQFKSIVIKVSHSFRHLG-ITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQ 121 (342)
Q Consensus 43 ~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g-~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~ 121 (342)
++.+-..+.+-+=|+++ +-+..+.....+.| +.+|+.|.- ...+-.-...-++|...|.-+..+-|...+......
T Consensus 24 ~i~~K~E~~nptGS~K~--R~a~~~v~~a~~~g~~~~g~~vv~-aSsGN~g~alA~~a~~~G~~~~i~~p~~~~~~k~~~ 100 (290)
T TIGR01138 24 EVWLKLEGNNPAGSVKD--RPALSMIVEAEKRGEIKPGDVLIE-ATSGNTGIALAMIAALKGYRMKLLMPDNMSQERKAA 100 (290)
T ss_pred eEEEEEccCCCCccHHH--HHHHHHHHHHHHcCCCCCCCEEEE-ECCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHH
Confidence 55555553333333433 12222223333444 366776544 566667777778888899877666666656667788
Q ss_pred hhhcCceEEEEcc
Q 019348 122 VKDSNPKLVITVP 134 (342)
Q Consensus 122 l~~~~~~~vi~~~ 134 (342)
++..++++++++.
T Consensus 101 ~~~~GA~v~~v~~ 113 (290)
T TIGR01138 101 MRAYGAELILVTK 113 (290)
T ss_pred HHHcCCEEEEeCC
Confidence 9999999999875
No 296
>TIGR03240 arg_catab_astD succinylglutamic semialdehyde dehydrogenase. Members of this protein family are succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71), the fourth enzyme in the arginine succinyltransferase (AST) pathway for arginine catabolism.
Probab=36.14 E-value=2.2e+02 Score=26.59 Aligned_cols=79 Identities=19% Similarity=0.036 Sum_probs=48.0
Q ss_pred CCeEEEEccchhHHHHHH-HHHHHHhhcCCeEEEccC-C---CHHHHHHHHHhcc-----ceEEEecHHHHHHHHcCCCC
Q 019348 234 LDHVVLCVLPMFHVFGLS-VILYDQLQKGNCVVSMGK-F---DIEMALRAIEKYR-----VTVWWVVPPIILALAKNSLV 303 (342)
Q Consensus 234 ~~d~~~~~~p~~~~~g~~-~~~~~~l~~G~~~v~~~~-~---~~~~~~~~i~~~~-----~t~~~~~P~~l~~l~~~~~~ 303 (342)
+--++....|+.+...+. ..+..+|.+|.++++-+. . ....+.+++.+.+ ++++......-..|..++
T Consensus 132 P~GVv~~I~PwN~P~~~~~~~i~~ALaaGN~VVlKPs~~tp~t~~~l~~~~~~aGlP~gvv~~v~g~~~~~~~L~~~~-- 209 (484)
T TIGR03240 132 PHGVVAVFGPYNFPGHLPNGHIVPALLAGNTVVFKPSELTPWVAEETVKLWEKAGLPAGVLNLVQGARETGVALAAHP-- 209 (484)
T ss_pred cccEEEEECCCchHHHHHHHHHHHHHHcCCEEEEECCccccHHHHHHHHHHHHhCcCcccEEEEeCCHHHHHHHhcCC--
Confidence 456778888887765442 347889999999998653 2 3456666666653 233333233445555543
Q ss_pred CccCCCCceEEEeeccc
Q 019348 304 RKFDISSLKLVGSGAAP 320 (342)
Q Consensus 304 ~~~~l~~lr~~~~gG~~ 320 (342)
.++.+.+.|+.
T Consensus 210 ------~vd~V~fTGS~ 220 (484)
T TIGR03240 210 ------DIDGLLFTGSS 220 (484)
T ss_pred ------CCCEEEEECCH
Confidence 46666666643
No 297
>TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family. Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names.
Probab=35.94 E-value=3.3e+02 Score=24.56 Aligned_cols=109 Identities=13% Similarity=0.148 Sum_probs=64.6
Q ss_pred CCHHHHHhhhcccCCCceEEEeCC---C----CcceeHHHHHHHHHHHHHHHHHcCCC--CCCEEEEECCCCCh--HHHH
Q 019348 27 FSMVHFLFRNSASYSSKLALIDAD---S----DESLSFSQFKSIVIKVSHSFRHLGIT--KKDVVLIFAPNSIH--FPIC 95 (342)
Q Consensus 27 ~~l~~~l~~~~~~~p~~~a~~~~~---~----~~~~Ty~~l~~~~~~la~~L~~~g~~--~g~~V~i~~~n~~~--~~~~ 95 (342)
.++.++++=..+.+-+..+++... + +-.+|++.+...+..++..+ ++. ..|++..+.|-... +...
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~---~~~~~~~dr~l~~~Pl~h~~g~~~~ 156 (386)
T TIGR02372 80 RRIGEWVDLIAHHSTPTARFTFATSGSTGTPKPVTHSWAALLSEAQAIAKIL---GERPPPVRRVISCVPAHHLYGFLFS 156 (386)
T ss_pred ccHHHHHHHHHhcCCCCceEEEECCCCCCCCceeEeeHHHHHHHHHHHHHHh---CcCCCCCCeEEEeCCcHHHHHHHHH
Confidence 466677665555444455554332 2 25789999988887777765 443 33567777676532 3344
Q ss_pred HHHHHHhCCeEeccCCCCCHHHHHHHhhhcCceEEEEcccchhhhh
Q 019348 96 FLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVK 141 (342)
Q Consensus 96 ~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 141 (342)
++..+..|+..+... ..++..+...++.. ++++..+.++..+.
T Consensus 157 ~l~~l~~G~~vv~~~-~~~~~~~l~~i~~~--t~~~~~P~~l~~l~ 199 (386)
T TIGR02372 157 CLLPSRRGLEAKQLA-AAPASGIMRHARPG--DLIVGTPFIWEQLA 199 (386)
T ss_pred HHHHHHCCCeEEecC-CCChHHHHHhhccC--CEEEECcHHHHHHH
Confidence 566677888877665 34555444444432 56666666665543
No 298
>TIGR01796 CM_mono_aroH monofunctional chorismate mutase, gram positive type, clade 1. This model represents a family of monofunctional (non-fused) chorismate mutases from gram positive bacteria (Firmicutes) and cyanobacteria. Trusted members of the family are found in operons with other enzymes of the chorismate pathways, both up- and downstream of CM (Listeria, Bacillus, Oceanobacillus) or are the sole CM in the genome where the other members of the chorismate pathways are found elsewhere in the genome (Nostoc, Thermosynechococcus).
Probab=35.69 E-value=46 Score=24.06 Aligned_cols=54 Identities=9% Similarity=0.122 Sum_probs=40.2
Q ss_pred eHHHHHHHHHHHHHHH-HHcCCCCCCEEEEECCCCChHHHHH--HHHHHh-CCeEecc
Q 019348 56 SFSQFKSIVIKVSHSF-RHLGITKKDVVLIFAPNSIHFPICF--LGVIAI-GAIASTA 109 (342)
Q Consensus 56 Ty~~l~~~~~~la~~L-~~~g~~~g~~V~i~~~n~~~~~~~~--lA~~~~-G~~~v~l 109 (342)
|-.++.+.+..+-..+ +++++.+.|.|-+++.-..++-.+| .|+-.. |...||+
T Consensus 14 t~e~I~~at~eLl~~ii~~N~l~~edivSv~FT~T~DL~a~FPA~aaR~~~Gw~~Vpl 71 (117)
T TIGR01796 14 EAEEIGEAVAELLTELMERNELTPEDLISVIFTVTEDLHADFPAAAARGLPGWTDVPV 71 (117)
T ss_pred CHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEecCcccccChHHHHHhccCCCCcce
Confidence 5678888888877666 6779999999888887776655544 556666 7777766
No 299
>PRK10524 prpE propionyl-CoA synthetase; Provisional
Probab=35.67 E-value=2e+02 Score=27.72 Aligned_cols=97 Identities=14% Similarity=0.093 Sum_probs=65.1
Q ss_pred CCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhh-ccccCCCeEEEEccchhHHHHHHHHHHHHhhcCCeEEEc-
Q 019348 190 KQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQ-ELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSM- 267 (342)
Q Consensus 190 ~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~-~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~- 267 (342)
.++.++++. .+..+|. .-.+|.+.+...+..+.... ..+..++|++...+|..-- .+..+++++..|+..+..
T Consensus 66 ~p~~~A~~~-~~~~~~~--~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e--~~~~~lA~~~~Gav~v~~~ 140 (629)
T PRK10524 66 RPEQLALIA-VSTETDE--ERTYTFRQLHDEVNRMAAMLRSLGVQRGDRVLIYMPMIAE--AAFAMLACARIGAIHSVVF 140 (629)
T ss_pred CCCCeEEEE-EcCCCCc--eEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHH--HHHHHHHHHHhCcEEEeeC
Confidence 356666654 2222222 22468888877654433222 2346788999988877543 336788999999987766
Q ss_pred cCCCHHHHHHHHHhccceEEEecH
Q 019348 268 GKFDIEMALRAIEKYRVTVWWVVP 291 (342)
Q Consensus 268 ~~~~~~~~~~~i~~~~~t~~~~~P 291 (342)
+.+.+..+...+++.++..+++..
T Consensus 141 ~~~~~~~l~~~l~~~~~~~li~~~ 164 (629)
T PRK10524 141 GGFASHSLAARIDDAKPVLIVSAD 164 (629)
T ss_pred CCCCHHHHHHHHHhcCCcEEEEcc
Confidence 557889999999999999988764
No 300
>cd07109 ALDH_AAS00426 Uncharacterized Saccharopolyspora spinosa aldehyde dehydrogenase (AAS00426)-like. Uncharacterized aldehyde dehydrogenase of Saccharopolyspora spinosa (AAS00426) and other similar sequences, are present in this CD.
Probab=35.50 E-value=2.4e+02 Score=26.12 Aligned_cols=79 Identities=14% Similarity=-0.003 Sum_probs=49.3
Q ss_pred CCeEEEEccchhHHHHHH-HHHHHHhhcCCeEEEccC-C---CHHHHHHHHHhcc-----ceEEEe-cHHHHHHHHcCCC
Q 019348 234 LDHVVLCVLPMFHVFGLS-VILYDQLQKGNCVVSMGK-F---DIEMALRAIEKYR-----VTVWWV-VPPIILALAKNSL 302 (342)
Q Consensus 234 ~~d~~~~~~p~~~~~g~~-~~~~~~l~~G~~~v~~~~-~---~~~~~~~~i~~~~-----~t~~~~-~P~~l~~l~~~~~ 302 (342)
+--++++..|+.+...+. ..+..+|.+|.++++-+. . ....+.+++++.+ ++++.. ....-..|+.++
T Consensus 117 P~GVv~~I~P~N~P~~~~~~~~~~ALaaGN~VvlKps~~~p~~~~~l~~~~~~aGlP~gv~~~v~g~~~~~~~~L~~~~- 195 (454)
T cd07109 117 PHGVTGHIIPWNYPLQITGRSVAPALAAGNAVVVKPAEDAPLTALRLAELAEEAGLPAGALNVVTGLGAEAGAALVAHP- 195 (454)
T ss_pred eeeEEEEECCCchHHHHHHHHHHHHHHcCCEEEEECCCCChHHHHHHHHHHHHcCcCccceEEEecCchHHHHHHhcCC-
Confidence 345778888887775542 357899999999998643 3 3455667777643 334433 224556666554
Q ss_pred CCccCCCCceEEEeeccc
Q 019348 303 VRKFDISSLKLVGSGAAP 320 (342)
Q Consensus 303 ~~~~~l~~lr~~~~gG~~ 320 (342)
.++.+.++|+.
T Consensus 196 -------~v~~v~ftGs~ 206 (454)
T cd07109 196 -------GVDHISFTGSV 206 (454)
T ss_pred -------CCCEEEEECCH
Confidence 36667776643
No 301
>PRK07059 Long-chain-fatty-acid--CoA ligase; Validated
Probab=35.28 E-value=2.7e+02 Score=26.32 Aligned_cols=84 Identities=13% Similarity=0.046 Sum_probs=59.1
Q ss_pred hHhHHHHHHHhhhhhhhh-ccccCCCeEEEEccchhHHHHHHHHHHHHhhcCCeEEEc-cCCCHHHHHHHHHhccceEEE
Q 019348 211 ILTHKNFIAASLMISAHQ-ELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSM-GKFDIEMALRAIEKYRVTVWW 288 (342)
Q Consensus 211 ~~t~~~l~~~~~~~~~~~-~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~-~~~~~~~~~~~i~~~~~t~~~ 288 (342)
.+|+.++...+..+.... ..+..++|++....+-... +...++.++..|+..+.. +......+...+++.+++.++
T Consensus 48 ~lTy~~l~~~~~~~a~~L~~~gi~~gd~V~i~~~n~~~--~~~~~la~~~~G~~~v~v~~~~~~~~~~~~~~~~~~~~vi 125 (557)
T PRK07059 48 AITYGELDELSRALAAWLQSRGLAKGARVAIMMPNVLQ--YPVAIAAVLRAGYVVVNVNPLYTPRELEHQLKDSGAEAIV 125 (557)
T ss_pred eeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHH--HHHHHHHHHhcCeEEeccCcccCHHHHHHHHHccCceEEE
Confidence 578888877655433221 2245677888777665443 225679999999998866 446789999999999999988
Q ss_pred ecHHHHHH
Q 019348 289 VVPPIILA 296 (342)
Q Consensus 289 ~~P~~l~~ 296 (342)
........
T Consensus 126 ~~~~~~~~ 133 (557)
T PRK07059 126 VLENFATT 133 (557)
T ss_pred EchhhHHH
Confidence 87765443
No 302
>cd07083 ALDH_P5CDH ALDH subfamily NAD+-dependent delta(1)-pyrroline-5-carboxylate dehydrogenase-like. ALDH subfamily of the NAD+-dependent, delta(1)-pyrroline-5-carboxylate dehydrogenases (P5CDH, EC=1.5.1.12). The proline catabolic enzymes, proline dehydrogenase and P5CDH catalyze the two-step oxidation of proline to glutamate. P5CDH catalyzes the oxidation of glutamate semialdehyde, utilizing NAD+ as the electron acceptor. In some bacteria, the two enzymes are fused into the bifunctional flavoenzyme, proline utilization A (PutA). These enzymes play important roles in cellular redox control, superoxide generation, and apoptosis. In certain prokaryotes such as Escherichia coli, PutA is also a transcriptional repressor of the proline utilization genes. Monofunctional enzyme sequences such as those seen in the Bacillus RocA P5CDH are also present in this subfamily as well as the human ALDH4A1 P5CDH and the Drosophila Aldh17 P5CDH.
Probab=35.14 E-value=2e+02 Score=27.08 Aligned_cols=90 Identities=10% Similarity=0.003 Sum_probs=53.7
Q ss_pred CCeEEEEccchhHHHHHH-HHHHHHhhcCCeEEEccC-C---CHHHHHHHHHhcc-----ceEEEec-HHHHHHHHcCCC
Q 019348 234 LDHVVLCVLPMFHVFGLS-VILYDQLQKGNCVVSMGK-F---DIEMALRAIEKYR-----VTVWWVV-PPIILALAKNSL 302 (342)
Q Consensus 234 ~~d~~~~~~p~~~~~g~~-~~~~~~l~~G~~~v~~~~-~---~~~~~~~~i~~~~-----~t~~~~~-P~~l~~l~~~~~ 302 (342)
+-.++++..|+.+...+. ..+..+|.+|.++++-+. . ....+.+++.+.+ ++++... ...-..|..++
T Consensus 154 P~GVv~~I~P~N~P~~~~~~~~~~ALaaGN~VVlKPs~~tp~~~~~l~~~~~eaGlP~gvv~~v~g~~~~~~~~L~~~~- 232 (500)
T cd07083 154 GLGAGVVISPWNFPVAIFTGMIVAPVAVGNTVIAKPAEDAVVVGYKVFEIFHEAGFPPGVVQFLPGVGEEVGAYLTEHE- 232 (500)
T ss_pred ccceEEEEcCCccHHHHHHHHHHHHHHcCCeEEEeCCCcchHHHHHHHHHHHHcCCCCCceEEEeCCCchhHHHHhcCC-
Confidence 446788888988876553 357889999999998643 2 3355666666652 2333332 33455565544
Q ss_pred CCccCCCCceEEEeecccCC-HHHHHHHHH
Q 019348 303 VRKFDISSLKLVGSGAAPLG-KELMEDCQK 331 (342)
Q Consensus 303 ~~~~~l~~lr~~~~gG~~l~-~~~~~~~~~ 331 (342)
.++.+.++|+.-. ..+.+...+
T Consensus 233 -------~v~~v~ftGs~~~g~~v~~~aa~ 255 (500)
T cd07083 233 -------RIRGINFTGSLETGKKIYEAAAR 255 (500)
T ss_pred -------CcCEEEEECcHHHHHHHHHHHhh
Confidence 4666776665443 334444433
No 303
>cd06448 L-Ser-dehyd Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- , D-serine, or L-threonine to pyruvate/ketobutyrate and ammonia.
Probab=34.84 E-value=1.3e+02 Score=26.32 Aligned_cols=91 Identities=12% Similarity=0.046 Sum_probs=57.3
Q ss_pred CceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeEeccCCCCCHHHHHHH
Q 019348 42 SKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQ 121 (342)
Q Consensus 42 ~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~ 121 (342)
.++.+-....+-.=|+++- .+..+-..+.+.|..+++.|... ..+-.-....++|...|.-++.+-|...+......
T Consensus 16 ~~i~~K~E~~nptGS~K~R--~a~~~l~~a~~~g~~~~~~vv~a-SsGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~ 92 (316)
T cd06448 16 CNVFLKLENLQPSGSFKIR--GIGHLCQKSAKQGLNECVHVVCS-SGGNAGLAAAYAARKLGVPCTIVVPESTKPRVVEK 92 (316)
T ss_pred CeEEEEeccCCCcCChHHH--HHHHHHHHHHHhhcccCCeEEEe-CCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHH
Confidence 3566655543444455542 12222223333343445555444 45666677778888999877777676666778889
Q ss_pred hhhcCceEEEEccc
Q 019348 122 VKDSNPKLVITVPE 135 (342)
Q Consensus 122 l~~~~~~~vi~~~~ 135 (342)
++..++++++++..
T Consensus 93 l~~~GA~v~~~~~~ 106 (316)
T cd06448 93 LRDEGATVVVHGKV 106 (316)
T ss_pred HHHcCCEEEEECCc
Confidence 99999999998765
No 304
>PRK06178 acyl-CoA synthetase; Validated
Probab=34.46 E-value=2.8e+02 Score=26.29 Aligned_cols=86 Identities=13% Similarity=0.097 Sum_probs=60.9
Q ss_pred hHhHHHHHHHhhhhhhhh-ccccCCCeEEEEccchhHHHHHHHHHHHHhhcCCeEEEc-cCCCHHHHHHHHHhccceEEE
Q 019348 211 ILTHKNFIAASLMISAHQ-ELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSM-GKFDIEMALRAIEKYRVTVWW 288 (342)
Q Consensus 211 ~~t~~~l~~~~~~~~~~~-~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~-~~~~~~~~~~~i~~~~~t~~~ 288 (342)
.+|+..+...+..+.... ..+..+++++....+-... ++..++.++..|+..+.. +......+...+++.++..++
T Consensus 58 ~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~--~~~~~lA~~~~G~~~v~l~p~~~~~~~~~~l~~~~~~~ii 135 (567)
T PRK06178 58 VITYAELDELSDRFAALLRQRGVGAGDRVAVFLPNCPQ--FHIVFFGILKLGAVHVPVSPLFREHELSYELNDAGAEVLL 135 (567)
T ss_pred eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCcH--HHHHHHHHHHhCeEEeecCCCCCHHHHHHHHHhcCCcEEE
Confidence 478888877655433222 2235577887777666553 336688999999987765 456788999999999999999
Q ss_pred ecHHHHHHHH
Q 019348 289 VVPPIILALA 298 (342)
Q Consensus 289 ~~P~~l~~l~ 298 (342)
+.+..+..+.
T Consensus 136 ~~~~~~~~l~ 145 (567)
T PRK06178 136 ALDQLAPVVE 145 (567)
T ss_pred EccchHHHHH
Confidence 9887765543
No 305
>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.
Probab=34.46 E-value=2.3e+02 Score=25.56 Aligned_cols=18 Identities=28% Similarity=0.464 Sum_probs=8.2
Q ss_pred CHHHHHHHhhhcCceEEEE
Q 019348 114 TVSELSKQVKDSNPKLVIT 132 (342)
Q Consensus 114 ~~~~l~~~l~~~~~~~vi~ 132 (342)
..+++...++. ++++|++
T Consensus 125 d~~~l~~ai~~-~tklV~l 142 (382)
T TIGR02080 125 DEQALRAALAQ-KPKLVLI 142 (382)
T ss_pred CHHHHHHhcCc-CceEEEE
Confidence 34445554432 3455544
No 306
>PRK06145 acyl-CoA synthetase; Validated
Probab=34.44 E-value=3.8e+02 Score=24.77 Aligned_cols=97 Identities=13% Similarity=0.155 Sum_probs=63.1
Q ss_pred CCCceEEEeCC---CC----cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChH--HHHHHHHHHhCCeEeccC
Q 019348 40 YSSKLALIDAD---SD----ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHF--PICFLGVIAIGAIASTAN 110 (342)
Q Consensus 40 ~p~~~a~~~~~---~~----~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~--~~~~lA~~~~G~~~v~l~ 110 (342)
.++.++++... ++ -.+|++.+...+. ......++..+|++....|-...+ ....++++..|+..+..
T Consensus 147 ~~~~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~---~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~g~~~~~~- 222 (497)
T PRK06145 147 APTDLVRLMYTSGTTDRPKGVMHSYGNLHWKSI---DHVIALGLTASERLLVVGPLYHVGAFDLPGIAVLWVGGTLRIH- 222 (497)
T ss_pred CccceEEEEeCCCCCCCCcEEEEecHHHHHHHH---HHHHhhCCCCCcEEEEecCchhHhHHHHHHHHHHhccCEEEEC-
Confidence 45666655322 22 5678888765443 233455888999988877654322 22345667777776554
Q ss_pred CCCCHHHHHHHhhhcCceEEEEcccchhhh
Q 019348 111 PVYTVSELSKQVKDSNPKLVITVPELWDKV 140 (342)
Q Consensus 111 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 140 (342)
+.....++...+++.++.++...+.....+
T Consensus 223 ~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l 252 (497)
T PRK06145 223 REFDPEAVLAAIERHRLTCAWMAPVMLSRV 252 (497)
T ss_pred CcCCHHHHHHHHHHhCCeEEEehHHHHHHH
Confidence 456788888999999999988877665544
No 307
>PRK13252 betaine aldehyde dehydrogenase; Provisional
Probab=34.34 E-value=2.4e+02 Score=26.45 Aligned_cols=79 Identities=9% Similarity=-0.107 Sum_probs=47.3
Q ss_pred CCeEEEEccchhHHHHHHH-HHHHHhhcCCeEEEccC-C---CHHHHHHHHHhcc-----ceEEEecHHHHHHHHcCCCC
Q 019348 234 LDHVVLCVLPMFHVFGLSV-ILYDQLQKGNCVVSMGK-F---DIEMALRAIEKYR-----VTVWWVVPPIILALAKNSLV 303 (342)
Q Consensus 234 ~~d~~~~~~p~~~~~g~~~-~~~~~l~~G~~~v~~~~-~---~~~~~~~~i~~~~-----~t~~~~~P~~l~~l~~~~~~ 303 (342)
+--++....|+.+...+.. .+..+|.+|.++++=+. . ....+.+++++.+ ++++......-..|..++
T Consensus 142 PlGVv~~I~p~N~P~~~~~~~~~~ALaaGN~Vv~Kps~~~p~t~~~l~~~~~~aglP~g~v~~v~g~~~~~~~L~~~~-- 219 (488)
T PRK13252 142 PLGVCAGIGAWNYPIQIACWKSAPALAAGNAMIFKPSEVTPLTALKLAEIYTEAGLPDGVFNVVQGDGRVGAWLTEHP-- 219 (488)
T ss_pred eeeEEEEECCCchHHHHHHHHHHHHHhcCCeEEEeCCccCcHHHHHHHHHHHHcCcCcccEEEEecCcHHHHHHhcCC--
Confidence 3456677778877655533 46789999999888543 2 3456677777652 233333233555565554
Q ss_pred CccCCCCceEEEeeccc
Q 019348 304 RKFDISSLKLVGSGAAP 320 (342)
Q Consensus 304 ~~~~l~~lr~~~~gG~~ 320 (342)
.++.+.+.|+.
T Consensus 220 ------~vd~V~fTGS~ 230 (488)
T PRK13252 220 ------DIAKVSFTGGV 230 (488)
T ss_pred ------CCCEEEEECcH
Confidence 35566665533
No 308
>COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]
Probab=34.34 E-value=2.5e+02 Score=26.65 Aligned_cols=99 Identities=11% Similarity=-0.035 Sum_probs=68.3
Q ss_pred CCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhh--ccccCCCeEEEEccchhHHHHHHHHHHHHhhcCCeEEEc-c
Q 019348 192 TDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQ--ELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSM-G 268 (342)
Q Consensus 192 ~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~--~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~-~ 268 (342)
+..+ |+|-+-.++. -.+|++.|...+..+.... .... ++|++...+|+.--.- ..++++...|+--... +
T Consensus 25 ~~~a-ii~~~e~~~~---~~~Ty~~L~~~v~r~A~~L~~~~gv-kGDrV~iymp~~pe~~--~a~LA~~riGAI~~~vf~ 97 (528)
T COG0365 25 DDTA-IIFDGEDGLF---RELTYGDLRREVARLANALKDLGGV-KGDRVAIYMPNSPEAV--IALLATARIGAIPAVVSP 97 (528)
T ss_pred CceE-EEEEcCCCCc---eEEEHHHHHHHHHHHHHHHHHhCCC-CCCEEEEEcCCCHHHH--HHHHHHHHcCCEEeeccc
Confidence 3444 4444433333 4567777776654433222 2334 8999999999976543 6788889999865544 6
Q ss_pred CCCHHHHHHHHHhccceEEEecHHHHHHH
Q 019348 269 KFDIEMALRAIEKYRVTVWWVVPPIILAL 297 (342)
Q Consensus 269 ~~~~~~~~~~i~~~~~t~~~~~P~~l~~l 297 (342)
.|.++.+...+.+-++.++++....++..
T Consensus 98 ~f~~~al~~Ri~d~~~k~vit~d~~~~~g 126 (528)
T COG0365 98 GLSAEAVADRIADLGPKVLIADDGTFRNG 126 (528)
T ss_pred CCCHHHHHHHHHccCCCEEEEeccccccc
Confidence 78999999999999999999887766544
No 309
>TIGR01780 SSADH succinate-semialdehyde dehydrogenase. SSADH enzyme belongs to the aldehyde dehydrogenase family (pfam00171), sharing a common evolutionary origin and enzymatic mechanism with lactaldehyde dehydrogenase. Like in lactaldehyde dehydrogenase and succinate semialdehyde dehydrogenase, the mammalian catalytic glutamic acid and cysteine residues are conserved in all the enzymes of this family (PS00687, PS00070).
Probab=34.33 E-value=2.2e+02 Score=26.30 Aligned_cols=79 Identities=13% Similarity=-0.023 Sum_probs=49.3
Q ss_pred CCeEEEEccchhHHHHHH-HHHHHHhhcCCeEEEccC-C---CHHHHHHHHHhcc-----ceEEEec--HHHHHHHHcCC
Q 019348 234 LDHVVLCVLPMFHVFGLS-VILYDQLQKGNCVVSMGK-F---DIEMALRAIEKYR-----VTVWWVV--PPIILALAKNS 301 (342)
Q Consensus 234 ~~d~~~~~~p~~~~~g~~-~~~~~~l~~G~~~v~~~~-~---~~~~~~~~i~~~~-----~t~~~~~--P~~l~~l~~~~ 301 (342)
+--++....|+.+..... ..+..+|.+|.++++-+. . ....+.+++++.+ ++++... ......|+.++
T Consensus 117 P~Gvv~~I~p~N~P~~~~~~~~~~ALaaGN~VvlKps~~~p~~~~~l~~~~~~aGlP~gvv~~v~g~~~~~~~~~l~~~~ 196 (448)
T TIGR01780 117 PVGVCAAITPWNFPAAMITRKAGAALAAGCTVVVKPAEQTPLSALALARLAEQAGIPKGVLNVITGSRAKEVGKVLCTSP 196 (448)
T ss_pred eeeEEEEEcCCChHHHHHHHHHHHHHHcCCeEeeECCccchHHHHHHHHHHHHcCCCccceEEEeCCCchHHHHHHhcCC
Confidence 335778888877765553 358899999999988643 3 3355666666653 2344433 34556676654
Q ss_pred CCCccCCCCceEEEeeccc
Q 019348 302 LVRKFDISSLKLVGSGAAP 320 (342)
Q Consensus 302 ~~~~~~l~~lr~~~~gG~~ 320 (342)
.++.+.++|+.
T Consensus 197 --------~i~~v~ftGs~ 207 (448)
T TIGR01780 197 --------LVRKISFTGST 207 (448)
T ss_pred --------CCCEEEEECcH
Confidence 35566666644
No 310
>PRK08574 cystathionine gamma-synthase; Provisional
Probab=34.26 E-value=2.2e+02 Score=25.70 Aligned_cols=56 Identities=16% Similarity=0.154 Sum_probs=24.8
Q ss_pred CCCCCEEEEECCCCChHHHHHHHHHHhCCeEeccCCCCCHHHHHHHhhhcCceEEEEc
Q 019348 76 ITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITV 133 (342)
Q Consensus 76 ~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~ 133 (342)
+++||.|++..+........+-.+...|+.+...++. .+++.+.++..++++|+++
T Consensus 89 l~~GD~Vlv~~~~y~~~~~~~~~~~~~g~~v~~~~~d--~~~l~~~i~~~~tklV~ie 144 (385)
T PRK08574 89 LKAGDRVVLPMEAYGTTLRLLKSLEKFGVKVVLAYPS--TEDIIEAIKEGRTKLVFIE 144 (385)
T ss_pred hCCCCEEEEcCCCchhHHHHHHHhhccCcEEEEECCC--HHHHHHhcCccCceEEEEE
Confidence 4566666554333222222221223445544443332 4455555544345556553
No 311
>PRK12582 acyl-CoA synthetase; Provisional
Probab=33.91 E-value=1.9e+02 Score=27.93 Aligned_cols=79 Identities=9% Similarity=-0.001 Sum_probs=55.4
Q ss_pred hHhHHHHHHHhhhhhhhh-ccccCCCeEEEEccchhHHHHHHHHHHHHhhcCCeEEEccC-CC-----HHHHHHHHHhcc
Q 019348 211 ILTHKNFIAASLMISAHQ-ELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGK-FD-----IEMALRAIEKYR 283 (342)
Q Consensus 211 ~~t~~~l~~~~~~~~~~~-~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~-~~-----~~~~~~~i~~~~ 283 (342)
.+|++.+...+..+.... ..+..++|++....+-.. .++..++.++..|+..+.... +. ...+...++..+
T Consensus 80 ~~Ty~el~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~--e~~~~~lA~~~~G~v~vpl~p~~~~~~~~~~~l~~~l~~~~ 157 (624)
T PRK12582 80 KVTYGEAKRAVDALAQALLDLGLDPGRPVMILSGNSI--EHALMTLAAMQAGVPAAPVSPAYSLMSHDHAKLKHLFDLVK 157 (624)
T ss_pred EeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCH--HHHHHHHHHHHcCCeEeeccCccccccCCHHHHHHHHHhcC
Confidence 578888877755543222 234567888888877433 444678899999999887754 33 378888899999
Q ss_pred ceEEEecH
Q 019348 284 VTVWWVVP 291 (342)
Q Consensus 284 ~t~~~~~P 291 (342)
+..+++..
T Consensus 158 ~~~vi~~~ 165 (624)
T PRK12582 158 PRVVFAQS 165 (624)
T ss_pred CcEEEecC
Confidence 98887754
No 312
>cd07131 ALDH_AldH-CAJ73105 Uncharacterized Candidatus kuenenia aldehyde dehydrogenase AldH (CAJ73105)-like. Uncharacterized aldehyde dehydrogenase of Candidatus kuenenia AldH (locus CAJ73105) and similar sequences with similarity to alpha-aminoadipic semialdehyde dehydrogenase (AASADH, human ALDH7A1, EC=1.2.1.31), Arabidopsis ALDH7B4, and Streptomyces clavuligerus delta-1-piperideine-6-carboxylate dehydrogenase (P6CDH) are included in this CD.
Probab=33.85 E-value=1.8e+02 Score=27.05 Aligned_cols=80 Identities=16% Similarity=0.040 Sum_probs=49.1
Q ss_pred CCeEEEEccchhHHHHHHH-HHHHHhhcCCeEEEccC-C---CHHHHHHHHHhcc-----ceEEEecHH-HHHHHHcCCC
Q 019348 234 LDHVVLCVLPMFHVFGLSV-ILYDQLQKGNCVVSMGK-F---DIEMALRAIEKYR-----VTVWWVVPP-IILALAKNSL 302 (342)
Q Consensus 234 ~~d~~~~~~p~~~~~g~~~-~~~~~l~~G~~~v~~~~-~---~~~~~~~~i~~~~-----~t~~~~~P~-~l~~l~~~~~ 302 (342)
+--++.+..|+.+...+.. .+..+|.+|.++++-+. . ....+.+++.+.+ ++++..... .-..|..++
T Consensus 135 P~GVv~~I~p~N~P~~~~~~~~~~ALaaGN~VvlKps~~~p~~~~~l~~~l~~aGlP~gvv~~v~g~~~~~~~~L~~~~- 213 (478)
T cd07131 135 PIGVVALITPWNFPVAIPSWKIFPALVCGNTVVFKPAEDTPACALKLVELFAEAGLPPGVVNVVHGRGEEVGEALVEHP- 213 (478)
T ss_pred ceeEEEEECCcCcHHHHHHHHHHHHHHcCCEEEEECCCcCcHHHHHHHHHHHhcCcCCCcEEEEecCchHHHHHHhcCC-
Confidence 3457888888877665533 46889999999888643 2 3455666666643 334433222 445555543
Q ss_pred CCccCCCCceEEEeecccC
Q 019348 303 VRKFDISSLKLVGSGAAPL 321 (342)
Q Consensus 303 ~~~~~l~~lr~~~~gG~~l 321 (342)
.++.+.++|++-
T Consensus 214 -------~vd~V~ftGs~~ 225 (478)
T cd07131 214 -------DVDVVSFTGSTE 225 (478)
T ss_pred -------CCCEEEEECcHH
Confidence 466677777543
No 313
>cd07095 ALDH_SGSD_AstD N-succinylglutamate 5-semialdehyde dehydrogenase, AstD-like. N-succinylglutamate 5-semialdehyde dehydrogenase or succinylglutamic semialdehyde dehydrogenase (SGSD, E. coli AstD, EC=1.2.1.71) involved in L-arginine degradation via the arginine succinyltransferase (AST) pathway and catalyzes the NAD+-dependent reduction of succinylglutamate semialdehyde into succinylglutamate.
Probab=33.66 E-value=2.7e+02 Score=25.57 Aligned_cols=79 Identities=16% Similarity=-0.003 Sum_probs=47.9
Q ss_pred CCeEEEEccchhHHHHHH-HHHHHHhhcCCeEEEccC-C---CHHHHHHHHHhcc-----ceEEEecHHHHHHHHcCCCC
Q 019348 234 LDHVVLCVLPMFHVFGLS-VILYDQLQKGNCVVSMGK-F---DIEMALRAIEKYR-----VTVWWVVPPIILALAKNSLV 303 (342)
Q Consensus 234 ~~d~~~~~~p~~~~~g~~-~~~~~~l~~G~~~v~~~~-~---~~~~~~~~i~~~~-----~t~~~~~P~~l~~l~~~~~~ 303 (342)
+-.++++..|+.+...+. ..+..+|.+|.++++-+. . ....+.+.+.+.+ ++++......-..|++++
T Consensus 97 P~GVv~~I~PwN~P~~~~~~~~~~ALaaGN~VI~Kps~~~~~~~~~l~~~~~~ag~P~g~~~~v~g~~~~~~~l~~~~-- 174 (431)
T cd07095 97 PHGVMAVFGPFNFPGHLPNGHIVPALLAGNTVVFKPSELTPAVAELMVELWEEAGLPPGVLNLVQGGRETGEALAAHE-- 174 (431)
T ss_pred cceEEEEECCCchHHHHHHHHHHHHHhcCCEEEeeCCCCCcHHHHHHHHHHHHhCcChhHheEEeCcHHHHHHHhcCC--
Confidence 556788888887766542 357788999999888643 2 3345556665542 334433333445555554
Q ss_pred CccCCCCceEEEeeccc
Q 019348 304 RKFDISSLKLVGSGAAP 320 (342)
Q Consensus 304 ~~~~l~~lr~~~~gG~~ 320 (342)
.++.+.++|+.
T Consensus 175 ------~v~~v~ftGs~ 185 (431)
T cd07095 175 ------GIDGLLFTGSA 185 (431)
T ss_pred ------CCCEEEEECcH
Confidence 45666666644
No 314
>cd07148 ALDH_RL0313 Uncharacterized ALDH ( RL0313) with similarity to Tortula ruralis aldehyde dehydrogenase ALDH21A1. Uncharacterized aldehyde dehydrogenase (locus RL0313) with sequence similarity to the moss Tortula ruralis aldehyde dehydrogenase ALDH21A1 (RNP123) believed to play an important role in the detoxification of aldehydes generated in response to desiccation- and salinity-stress, and similar sequences are included in this CD.
Probab=33.60 E-value=2.3e+02 Score=26.24 Aligned_cols=79 Identities=9% Similarity=-0.014 Sum_probs=46.8
Q ss_pred CCeEEEEccchhHHHHHH-HHHHHHhhcCCeEEEccC-C---CHHHHHHHHHhcc--c---eEEEecHHHHHHHHcCCCC
Q 019348 234 LDHVVLCVLPMFHVFGLS-VILYDQLQKGNCVVSMGK-F---DIEMALRAIEKYR--V---TVWWVVPPIILALAKNSLV 303 (342)
Q Consensus 234 ~~d~~~~~~p~~~~~g~~-~~~~~~l~~G~~~v~~~~-~---~~~~~~~~i~~~~--~---t~~~~~P~~l~~l~~~~~~ 303 (342)
+--++....|+.+...+. ..+..+|.+|.++++=+. . ....+.+++++.+ . +++......-..|..++
T Consensus 124 P~Gvv~~I~p~N~P~~~~~~~~~~ALaaGN~VvlKps~~~p~~~~~l~~~~~~aGlP~gvv~~v~g~~~~~~~L~~~~-- 201 (455)
T cd07148 124 PIGVVVAISAFNHPLNLIVHQVAPAIAAGCPVIVKPALATPLSCLAFVDLLHEAGLPEGWCQAVPCENAVAEKLVTDP-- 201 (455)
T ss_pred cceEEEEECCCCcHHHHHHHHHHHHHHcCCEEEeeCCCcccHHHHHHHHHHHHcCCCcCcEEEEeCChHHHHHHhcCC--
Confidence 445667777776665542 347888999999988643 2 3456667777642 2 33333334445555544
Q ss_pred CccCCCCceEEEeeccc
Q 019348 304 RKFDISSLKLVGSGAAP 320 (342)
Q Consensus 304 ~~~~l~~lr~~~~gG~~ 320 (342)
.++.+.+.|+.
T Consensus 202 ------~v~~v~fTGs~ 212 (455)
T cd07148 202 ------RVAFFSFIGSA 212 (455)
T ss_pred ------CCCEEEEECCH
Confidence 35566666643
No 315
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
Probab=33.56 E-value=4e+02 Score=24.77 Aligned_cols=59 Identities=17% Similarity=0.184 Sum_probs=36.3
Q ss_pred CCCCEEEEECCCCChHHHHHHHHHHhCCeEeccCC-CCCHHHHHHHhhhcCceEEEEcccc
Q 019348 77 TKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANP-VYTVSELSKQVKDSNPKLVITVPEL 136 (342)
Q Consensus 77 ~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~-~~~~~~l~~~l~~~~~~~vi~~~~~ 136 (342)
.+||+|++= .++.......+-..-.-.+.||++. ....+.+.+.++..+|+++.+.+.+
T Consensus 177 ~pGd~v~vE-~PtY~~~~~~~~~~g~~~~~vp~d~~G~~~e~le~~~~~~~~k~~y~~P~~ 236 (459)
T COG1167 177 DPGDTVLVE-DPTYPGALQALEALGARVIPVPVDEDGIDPEALEEALAQWKPKAVYVTPTF 236 (459)
T ss_pred CCCCEEEEc-CCCcHHHHHHHHHcCCcEEecCCCCCCCCHHHHHHHHhhcCCcEEEECCCC
Confidence 467877664 2344444444444333344444442 4577889999998899999987643
No 316
>PLN02467 betaine aldehyde dehydrogenase
Probab=33.50 E-value=2.9e+02 Score=26.02 Aligned_cols=80 Identities=13% Similarity=-0.018 Sum_probs=49.7
Q ss_pred CCCeEEEEccchhHHHHHHH-HHHHHhhcCCeEEEccC-C---CHHHHHHHHHhcc-----ceEEEec-HHHHHHHHcCC
Q 019348 233 ELDHVVLCVLPMFHVFGLSV-ILYDQLQKGNCVVSMGK-F---DIEMALRAIEKYR-----VTVWWVV-PPIILALAKNS 301 (342)
Q Consensus 233 ~~~d~~~~~~p~~~~~g~~~-~~~~~l~~G~~~v~~~~-~---~~~~~~~~i~~~~-----~t~~~~~-P~~l~~l~~~~ 301 (342)
.+--+++...|+.+...+.. .+..+|.+|.++++=+. . ....+.+++.+.+ ++++... ...-..|..++
T Consensus 150 ~P~GVv~~I~PwN~P~~~~~~~i~~ALaaGN~Vv~Kps~~tp~~~~~l~~~~~eag~P~gvv~~v~g~~~~~~~~L~~~~ 229 (503)
T PLN02467 150 EPLGVVGLITPWNYPLLMATWKVAPALAAGCTAVLKPSELASVTCLELADICREVGLPPGVLNVVTGLGTEAGAPLASHP 229 (503)
T ss_pred ecCceEEEECCCChHHHHHHHHHHHHHHcCCEEEEECCCcCcHHHHHHHHHHHHcCcCcCeEEEEeCCchhHHHHHhcCC
Confidence 34567888888877766533 37789999999998643 2 3455666666643 4444442 23456666554
Q ss_pred CCCccCCCCceEEEeeccc
Q 019348 302 LVRKFDISSLKLVGSGAAP 320 (342)
Q Consensus 302 ~~~~~~l~~lr~~~~gG~~ 320 (342)
.++.+.++|+.
T Consensus 230 --------~v~~v~fTGs~ 240 (503)
T PLN02467 230 --------GVDKIAFTGST 240 (503)
T ss_pred --------CCCEEEEECCH
Confidence 35566666643
No 317
>PRK13968 putative succinate semialdehyde dehydrogenase; Provisional
Probab=33.47 E-value=3.2e+02 Score=25.43 Aligned_cols=78 Identities=9% Similarity=-0.019 Sum_probs=45.5
Q ss_pred CCeEEEEccchhHHHHHHH-HHHHHhhcCCeEEEc-cCCCH---HHHHHHHHhcc--c---eEEEecHHHHHHHHcCCCC
Q 019348 234 LDHVVLCVLPMFHVFGLSV-ILYDQLQKGNCVVSM-GKFDI---EMALRAIEKYR--V---TVWWVVPPIILALAKNSLV 303 (342)
Q Consensus 234 ~~d~~~~~~p~~~~~g~~~-~~~~~l~~G~~~v~~-~~~~~---~~~~~~i~~~~--~---t~~~~~P~~l~~l~~~~~~ 303 (342)
+--++....|+.+...+.. .+..+|.+|.++++= ++..| ..+.+++.+.+ . +++.........++.++
T Consensus 126 P~GvV~~I~PwN~P~~~~~~~~~~ALaaGN~vv~KPs~~tp~~~~~l~~~~~~aGlP~gv~~~v~g~~~~~~~l~~~~-- 203 (462)
T PRK13968 126 PLGTILAIMPWNFPLWQVMRGAVPILLAGNGYLLKHAPNVMGCAQLIAQVFKDAGIPQGVYGWLNADNDGVSQMINDS-- 203 (462)
T ss_pred ccceEEEEcCCchHHHHHHHHHHHHHHcCCEEEEECCCcChHHHHHHHHHHHHcCcCcCcEEEEecCchhhHHHhcCC--
Confidence 4467777888877655433 478899999999984 44433 44555555542 2 33332222233344433
Q ss_pred CccCCCCceEEEeecc
Q 019348 304 RKFDISSLKLVGSGAA 319 (342)
Q Consensus 304 ~~~~l~~lr~~~~gG~ 319 (342)
.++.+.+.|+
T Consensus 204 ------~v~~V~fTGs 213 (462)
T PRK13968 204 ------RIAAVTVTGS 213 (462)
T ss_pred ------CCCEEEEECC
Confidence 4667777776
No 318
>PRK13237 tyrosine phenol-lyase; Provisional
Probab=33.31 E-value=3.7e+02 Score=25.00 Aligned_cols=69 Identities=13% Similarity=0.129 Sum_probs=43.7
Q ss_pred cceeHHHHHHHHHHH--------------HHH-HHHcCCCCCCEEEEECCCCChHHHHHHH-HHHhCCeEecc-------
Q 019348 53 ESLSFSQFKSIVIKV--------------SHS-FRHLGITKKDVVLIFAPNSIHFPICFLG-VIAIGAIASTA------- 109 (342)
Q Consensus 53 ~~~Ty~~l~~~~~~l--------------a~~-L~~~g~~~g~~V~i~~~n~~~~~~~~lA-~~~~G~~~v~l------- 109 (342)
..-||.+|.+.+..+ |.. +...++++||.| + +..++...-| +...|++++=+
T Consensus 76 gd~s~~~LE~~vAe~lG~e~aV~v~sGTaAl~ll~~l~v~pGd~V----p-~n~~f~Tt~ahI~~~Ga~fvDi~~d~a~~ 150 (460)
T PRK13237 76 GSRNFYHLEETVQEYYGFKHVVPTHQGRGAENLLSRIAIKPGQYV----P-GNMYFTTTRYHQELNGGIFVDIIIDEAHD 150 (460)
T ss_pred CCCcHHHHHHHHHHHHCCCeEEEeCCHHHHHHHHHHhCCCCcCEE----C-CccchHhhHHHHHhCCcEEEeeecccccc
Confidence 455777887776544 222 245689999964 3 3344555545 78888877633
Q ss_pred -------CCCCCHHHHHHHhhhcC
Q 019348 110 -------NPVYTVSELSKQVKDSN 126 (342)
Q Consensus 110 -------~~~~~~~~l~~~l~~~~ 126 (342)
.-+...+.+...++...
T Consensus 151 ~~~~~p~tgnlD~d~Le~~I~~~~ 174 (460)
T PRK13237 151 AQSDHPFKGNVDLDKLQALIDEVG 174 (460)
T ss_pred cccCCCCCCCcCHHHHHHHhcccc
Confidence 33467788888887543
No 319
>cd07113 ALDH_PADH_NahF Escherichia coli NAD+-dependent phenylacetaldehyde dehydrogenase PadA-like. NAD+-dependent, homodimeric, phenylacetaldehyde dehydrogenase (PADH, EC=1.2.1.39) PadA of Escherichia coli involved in the catabolism of 2-phenylethylamine, and other related sequences, are present in this CD. Also included is the Pseudomonas fluorescens ST StyD PADH involved in styrene catabolism, the Sphingomonas sp. LB126 FldD protein involved in fluorene degradation, and the Novosphingobium aromaticivorans NahF salicylaldehyde dehydrogenase involved in the NAD+-dependent conversion of salicylaldehyde to salicylate.
Probab=33.24 E-value=2.4e+02 Score=26.35 Aligned_cols=79 Identities=14% Similarity=0.049 Sum_probs=48.3
Q ss_pred CCeEEEEccchhHHHHHHH-HHHHHhhcCCeEEEccC-C---CHHHHHHHHHhcc-----ceEEEecHHHHHHHHcCCCC
Q 019348 234 LDHVVLCVLPMFHVFGLSV-ILYDQLQKGNCVVSMGK-F---DIEMALRAIEKYR-----VTVWWVVPPIILALAKNSLV 303 (342)
Q Consensus 234 ~~d~~~~~~p~~~~~g~~~-~~~~~l~~G~~~v~~~~-~---~~~~~~~~i~~~~-----~t~~~~~P~~l~~l~~~~~~ 303 (342)
+--++....|+.+...+.. .+..+|.+|.++++=+. . ....+.+++++.+ ++++......-..|++++
T Consensus 142 P~GVv~~I~p~N~P~~~~~~~i~~ALaaGN~VvlKPs~~tp~~~~~l~~~~~~aglP~gvv~~v~g~~~~~~~L~~~~-- 219 (477)
T cd07113 142 PVGVVAGIVPWNFSVMIAVWKIGAALATGCTIVIKPSEFTPLTLLRVAELAKEAGIPDGVLNVVNGKGAVGAQLISHP-- 219 (477)
T ss_pred ecceEEEEcCCChHHHHHHHHHHHHHHcCCEEEEECCCCCcHHHHHHHHHHHHcCcCCCcEEEEecCchHHHHHhcCC--
Confidence 4456777778877766533 36789999999998543 3 3355666666642 333333223455666654
Q ss_pred CccCCCCceEEEeeccc
Q 019348 304 RKFDISSLKLVGSGAAP 320 (342)
Q Consensus 304 ~~~~l~~lr~~~~gG~~ 320 (342)
.++.+.++|+.
T Consensus 220 ------~v~~V~fTGS~ 230 (477)
T cd07113 220 ------DVAKVSFTGSV 230 (477)
T ss_pred ------CCCEEEEECcH
Confidence 46667777754
No 320
>PLN02766 coniferyl-aldehyde dehydrogenase
Probab=33.20 E-value=2.5e+02 Score=26.43 Aligned_cols=80 Identities=14% Similarity=-0.027 Sum_probs=50.0
Q ss_pred CCeEEEEccchhHHHHHHH-HHHHHhhcCCeEEEccC-CCH---HHHHHHHHhcc-----ceEEEec-HHHHHHHHcCCC
Q 019348 234 LDHVVLCVLPMFHVFGLSV-ILYDQLQKGNCVVSMGK-FDI---EMALRAIEKYR-----VTVWWVV-PPIILALAKNSL 302 (342)
Q Consensus 234 ~~d~~~~~~p~~~~~g~~~-~~~~~l~~G~~~v~~~~-~~~---~~~~~~i~~~~-----~t~~~~~-P~~l~~l~~~~~ 302 (342)
+--+++...|+.+...+.. .+..+|.+|.++++=+. ..| ..+.+++++.+ ++++... ...-..|..++
T Consensus 158 P~GVV~~I~PwN~P~~~~~~~~~~ALaaGN~VVlKPs~~tp~~~~~l~~~~~~aGlP~gvv~~v~g~~~~~~~~L~~~p- 236 (501)
T PLN02766 158 PIGVVGHIIPWNFPSTMFFMKVAPALAAGCTMVVKPAEQTPLSALFYAHLAKLAGVPDGVINVVTGFGPTAGAAIASHM- 236 (501)
T ss_pred cceEEEEECCCCChHHHHHHHHHHHHHcCCEEEEeCCCCchHHHHHHHHHHHhcCCCcCcEEEEecCchHHHHHHhcCC-
Confidence 5567888888877766533 47889999999998643 333 45666666652 4444442 23455666654
Q ss_pred CCccCCCCceEEEeecccC
Q 019348 303 VRKFDISSLKLVGSGAAPL 321 (342)
Q Consensus 303 ~~~~~l~~lr~~~~gG~~l 321 (342)
.++.+.++|+.-
T Consensus 237 -------~v~~V~FTGS~~ 248 (501)
T PLN02766 237 -------DVDKVSFTGSTE 248 (501)
T ss_pred -------CCCEEEEECcHH
Confidence 466676666443
No 321
>PRK10090 aldehyde dehydrogenase A; Provisional
Probab=33.16 E-value=2.8e+02 Score=25.30 Aligned_cols=79 Identities=18% Similarity=0.123 Sum_probs=48.3
Q ss_pred CCeEEEEccchhHHHHHH-HHHHHHhhcCCeEEEccC-C---CHHHHHHHHHhcc-----ceEEEe-cHHHHHHHHcCCC
Q 019348 234 LDHVVLCVLPMFHVFGLS-VILYDQLQKGNCVVSMGK-F---DIEMALRAIEKYR-----VTVWWV-VPPIILALAKNSL 302 (342)
Q Consensus 234 ~~d~~~~~~p~~~~~g~~-~~~~~~l~~G~~~v~~~~-~---~~~~~~~~i~~~~-----~t~~~~-~P~~l~~l~~~~~ 302 (342)
+--+++...|+.+...+. ..+..+|.+|.++++-+. . ....+.+++++.+ ++++.. .+..-..|++++
T Consensus 71 P~Gvv~~i~p~N~P~~~~~~~~~~ALaaGN~VvlKps~~~p~~~~~l~~~~~~aglP~gv~~~v~g~~~~~~~~l~~~~- 149 (409)
T PRK10090 71 ALGVTTGILPWNFPFFLIARKMAPALLTGNTIVIKPSEFTPNNAIAFAKIVDEIGLPKGVFNLVLGRGETVGQELAGNP- 149 (409)
T ss_pred cccEEEEECCCchHHHHHHHHHHHHHHcCCEEEEECCCcChHHHHHHHHHHHHcCCCcccEEEEeCCChhHHHHHhcCC-
Confidence 446788888888765543 347889999999998654 2 3455666666642 233333 233455666554
Q ss_pred CCccCCCCceEEEeeccc
Q 019348 303 VRKFDISSLKLVGSGAAP 320 (342)
Q Consensus 303 ~~~~~l~~lr~~~~gG~~ 320 (342)
.++.+.+.|++
T Consensus 150 -------~v~~V~ftGs~ 160 (409)
T PRK10090 150 -------KVAMVSMTGSV 160 (409)
T ss_pred -------CcCEEEEECCH
Confidence 45566666633
No 322
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=33.06 E-value=1.5e+02 Score=21.09 Aligned_cols=46 Identities=26% Similarity=0.258 Sum_probs=32.5
Q ss_pred hhHHHHHHHHHHHHhhc-CCeEEEcc-CCCHHHHHHHHHhccceEEEec
Q 019348 244 MFHVFGLSVILYDQLQK-GNCVVSMG-KFDIEMALRAIEKYRVTVWWVV 290 (342)
Q Consensus 244 ~~~~~g~~~~~~~~l~~-G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~ 290 (342)
..|..|+ ..+...+.. |..+.+.+ ..+.+.+.+.++++++.++..+
T Consensus 11 ~~~~lGl-~~la~~l~~~G~~v~~~d~~~~~~~l~~~~~~~~pd~V~iS 58 (121)
T PF02310_consen 11 EVHPLGL-LYLAAYLRKAGHEVDILDANVPPEELVEALRAERPDVVGIS 58 (121)
T ss_dssp SSTSHHH-HHHHHHHHHTTBEEEEEESSB-HHHHHHHHHHTTCSEEEEE
T ss_pred cchhHHH-HHHHHHHHHCCCeEEEECCCCCHHHHHHHHhcCCCcEEEEE
Confidence 3556676 555555555 88887774 4467999999999998887664
No 323
>COG1611 Predicted Rossmann fold nucleotide-binding protein [General function prediction only]
Probab=33.01 E-value=2.7e+02 Score=22.62 Aligned_cols=71 Identities=8% Similarity=0.161 Sum_probs=47.7
Q ss_pred CCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeEeccCCCCCHHH
Q 019348 41 SSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSE 117 (342)
Q Consensus 41 p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~ 117 (342)
-.++++++.. .+...-.+.++.++++++.|.++| .+.+.....=-.=++.=++...|..++-+.|....++
T Consensus 14 ~~~i~V~~gs-~~~~~~~~~~~~a~~lg~~la~~g-----~~V~tGG~~GiMea~~~gA~~~gg~~vGi~p~~~~~~ 84 (205)
T COG1611 14 IRQIVVICGS-ARGIEPEEYYELARELGRELAKRG-----LLVITGGGPGVMEAVARGALEAGGLVVGILPGLLHEQ 84 (205)
T ss_pred cceEEEEEeC-CCCCCCHHHHHHHHHHHHHHHhCC-----cEEEeCCchhhhhHHHHHHHHcCCeEEEecCCCchhh
Confidence 3456677762 222333448999999999998876 3444444333444666778899999999998776553
No 324
>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional
Probab=32.90 E-value=2.7e+02 Score=24.95 Aligned_cols=55 Identities=13% Similarity=0.149 Sum_probs=35.2
Q ss_pred CCCCCEEEEECCCCChHHHHHHHHHHhCCeEeccCC--C----CCHHHHHHHhhhc------CceEEEEc
Q 019348 76 ITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANP--V----YTVSELSKQVKDS------NPKLVITV 133 (342)
Q Consensus 76 ~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~--~----~~~~~l~~~l~~~------~~~~vi~~ 133 (342)
+++||.|++. .+ .+...+.++...|+.++.++. . ...+.+...++.. ++++|+++
T Consensus 99 ~~~gd~Vlv~-~~--~h~s~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lV~l~ 165 (387)
T PRK09331 99 CKKGDYVVLD-GL--AHYTSYVAAERAGLNVREVPKTGYPEYKITPEAYAEKIEEVKEETGKPPALALLT 165 (387)
T ss_pred cCCCCEEEEC-CC--chHHHHHHHHHcCCEEEEEeCccCcCCCcCHHHHHHHHHHhhhccCCCCEEEEEE
Confidence 3678887664 22 334445567788988777765 2 3567777777643 57777665
No 325
>PLN02356 phosphateglycerate kinase
Probab=32.89 E-value=3e+02 Score=25.33 Aligned_cols=88 Identities=11% Similarity=-0.069 Sum_probs=53.5
Q ss_pred ceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCC-CCCCEEEEECCCCChHHHHHHHHHHhCCeEeccCCCCCHHHHHHH
Q 019348 43 KLALIDADSDESLSFSQFKSIVIKVSHSFRHLGI-TKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQ 121 (342)
Q Consensus 43 ~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~-~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~ 121 (342)
++.+-....+-+=|+++ +-+..+...+.+.|. ++|..|. ....+-.-+..-++|...|.-++.+=|...+.+....
T Consensus 69 ~v~~KlE~~nPtGS~Kd--R~A~~~i~~a~~~g~~~~~g~Vv-eaSSGN~g~alA~~aa~~G~~~~ivvP~~~s~~K~~~ 145 (423)
T PLN02356 69 EILGKCEFLNPGGSVKD--RVAVKIIEEALESGQLFPGGVVT-EGSAGSTAISLATVAPAYGCKCHVVIPDDVAIEKSQI 145 (423)
T ss_pred EEEEEeccCCCCCCHHH--HHHHHHHHHHHhCCccCCCCEEE-EeCCHHHHHHHHHHHHHcCCcEEEEECCCCcHHHHHH
Confidence 34444443334444432 222333333444443 3666554 3444555778888888999877666666666667889
Q ss_pred hhhcCceEEEEc
Q 019348 122 VKDSNPKLVITV 133 (342)
Q Consensus 122 l~~~~~~~vi~~ 133 (342)
++..+++++.++
T Consensus 146 ir~~GAeVi~v~ 157 (423)
T PLN02356 146 LEALGATVERVR 157 (423)
T ss_pred HHHcCCEEEEEC
Confidence 999999999985
No 326
>PRK12492 long-chain-fatty-acid--CoA ligase; Provisional
Probab=32.81 E-value=2.1e+02 Score=27.10 Aligned_cols=81 Identities=10% Similarity=0.047 Sum_probs=57.8
Q ss_pred hHhHHHHHHHhhhhhhhhc--cccCCCeEEEEccchhHHHHHHHHHHHHhhcCCeEEEc-cCCCHHHHHHHHHhccceEE
Q 019348 211 ILTHKNFIAASLMISAHQE--LVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSM-GKFDIEMALRAIEKYRVTVW 287 (342)
Q Consensus 211 ~~t~~~l~~~~~~~~~~~~--~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~-~~~~~~~~~~~i~~~~~t~~ 287 (342)
.+|...+...+..+..... .+..++|++....+-.. .+...++.++..|+..+.. +.+....+...+++-++..+
T Consensus 49 ~~Ty~~l~~~~~~~a~~L~~~~gi~~gd~V~i~~~n~~--e~~~~~la~~~~G~v~v~~~~~~~~~~l~~~l~~~~~~~~ 126 (562)
T PRK12492 49 TLSYAELERHSAAFAAYLQQHTDLVPGDRIAVQMPNVL--QYPIAVFGALRAGLIVVNTNPLYTAREMRHQFKDSGARAL 126 (562)
T ss_pred eeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCH--HHHHHHHHHHHcCeEEeccCccCCHHHHHHHHhccCceEE
Confidence 5688887766555433332 24567888888766654 3436788999999888866 45678999999999999998
Q ss_pred EecHHH
Q 019348 288 WVVPPI 293 (342)
Q Consensus 288 ~~~P~~ 293 (342)
...+..
T Consensus 127 i~~~~~ 132 (562)
T PRK12492 127 VYLNMF 132 (562)
T ss_pred Eecccc
Confidence 876543
No 327
>cd07110 ALDH_F10_BADH Arabidopsis betaine aldehyde dehydrogenase 1 and 2, ALDH family 10A8 and 10A9-like. Present in this CD are the Arabidopsis betaine aldehyde dehydrogenase (BADH) 1 (chloroplast) and 2 (mitochondria), also known as, aldehyde dehydrogenase family 10 member A8 and aldehyde dehydrogenase family 10 member A9, respectively, and are putative dehydration- and salt-inducible BADHs (EC 1.2.1.8) that catalyze the oxidation of betaine aldehyde to the compatible solute glycine betaine.
Probab=32.80 E-value=2.6e+02 Score=25.87 Aligned_cols=78 Identities=13% Similarity=-0.029 Sum_probs=48.8
Q ss_pred CCeEEEEccchhHHHHHHH-HHHHHhhcCCeEEEccC-C---CHHHHHHHHHhcc-----ceEEEecH-HHHHHHHcCCC
Q 019348 234 LDHVVLCVLPMFHVFGLSV-ILYDQLQKGNCVVSMGK-F---DIEMALRAIEKYR-----VTVWWVVP-PIILALAKNSL 302 (342)
Q Consensus 234 ~~d~~~~~~p~~~~~g~~~-~~~~~l~~G~~~v~~~~-~---~~~~~~~~i~~~~-----~t~~~~~P-~~l~~l~~~~~ 302 (342)
+--++++..|+.+...... .+..+|.+|.++++-+. . ....+.+++++.+ ++++.... ..-..|..++
T Consensus 120 P~GVV~~I~p~N~P~~~~~~~~~~ALaaGN~VV~Kps~~~p~~~~~l~~~~~~aGlP~gvv~~v~g~~~~~~~~L~~~~- 198 (456)
T cd07110 120 PVGVVGLITPWNFPLLMAAWKVAPALAAGCTVVLKPSELTSLTELELAEIAAEAGLPPGVLNVVTGTGDEAGAPLAAHP- 198 (456)
T ss_pred cceeEEEECCCChHHHHHHHHHHHHHHcCCEEEEECcccchHHHHHHHHHHHHcCCCCCcEEEEecCchHHHHHHhcCC-
Confidence 4458888888877665533 47789999999998643 2 3355666666653 33444432 3455666554
Q ss_pred CCccCCCCceEEEeecc
Q 019348 303 VRKFDISSLKLVGSGAA 319 (342)
Q Consensus 303 ~~~~~l~~lr~~~~gG~ 319 (342)
.++.+.++|+
T Consensus 199 -------~v~~V~fTGs 208 (456)
T cd07110 199 -------GIDKISFTGS 208 (456)
T ss_pred -------CCCEEEEECC
Confidence 4566666664
No 328
>PRK06060 acyl-CoA synthetase; Validated
Probab=32.72 E-value=3.2e+02 Score=26.93 Aligned_cols=98 Identities=16% Similarity=0.123 Sum_probs=61.4
Q ss_pred CCceEEEeCC---CC----cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCC--hHHHHHHHHHHhCCeEeccCC
Q 019348 41 SSKLALIDAD---SD----ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSI--HFPICFLGVIAIGAIASTANP 111 (342)
Q Consensus 41 p~~~a~~~~~---~~----~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~--~~~~~~lA~~~~G~~~v~l~~ 111 (342)
++.+|++-.. ++ -.+|.+.+...+..+.. ...++.++|++....+-.. .+...++..+..|+..+..+.
T Consensus 144 ~~~~a~il~TSGSTG~PKgV~~sh~~~~~~~~~~~~--~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~l~~G~~~v~~~~ 221 (705)
T PRK06060 144 GDALAYATYTSGTTGPPKAAIHRHADPLTFVDAMCR--KALRLTPEDTGLCSARMYFAYGLGNSVWFPLATGGSAVINSA 221 (705)
T ss_pred CCCeEEEEECCCCCCCCcEEEEccccHHHHHHHHHH--HhhCCCCcceeEEeccchhhcchhHHHHHHHhcCCEEEEeCC
Confidence 4666665332 22 45677777655544322 2346778887766655332 223345667788888776665
Q ss_pred CCCHHHHHHHhhhcCceEEEEcccchhhh
Q 019348 112 VYTVSELSKQVKDSNPKLVITVPELWDKV 140 (342)
Q Consensus 112 ~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 140 (342)
......+...+++.++.++...+.....+
T Consensus 222 ~~~~~~~~~~i~~~~~t~~~~~P~~l~~l 250 (705)
T PRK06060 222 PVTPEAAAILSARFGPSVLYGVPNFFARV 250 (705)
T ss_pred CCCHHHHHHHHHhcCCeEEeeHHHHHHHH
Confidence 66677778888999999988776655443
No 329
>PF00156 Pribosyltran: Phosphoribosyl transferase domain; InterPro: IPR000836 The name PRT comes from phosphoribosyltransferase (PRTase) enzymes, which carry out phosphoryl transfer reactions on 5-phosphoribosyl-alpha1-pyrophosphate PRPP, an activated form of ribose-5-phosphate. Members of Phosphoribosyltransferase (PRT) are catalytic and are regulatory proteins involved in nucleotide synthesis and salvage []. This includes a range of diverse phosphoribosyl transferase enzymes including adenine phosphoribosyltransferase (2.4.2.7 from EC); hypoxanthine-guanine-xanthine phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase (2.4.2.8 from EC); ribose-phosphate pyrophosphokinase (2.7.6.1 from EC); amidophosphoribosyltransferase (2.4.2.14 from EC); orotate phosphoribosyltransferase (2.4.2.10 from EC);uracil phosphoribosyltransferase (2.4.2.9 from EC); and xanthine-guanine phosphoribosyltransferase (2.4.2.22 from EC). Not all PRT proteins are enzymes. For example, in some bacteria PRT proteins regulate the expression of purine and pyrimidine synthetic genes. Members of PRT are defined by the protein fold and by a short 13-residue sequence motif, The motif consists of four hydrophobic amino acids, two acidic amino acids and seven amino acids of variable character, usually including glycine and threonine. The motif has been predicted to be a PRPP-binding site in advance of structural information [, ]. Apart of this motif, different PRT proteins have a low level of sequence identity, less than 15%. The PRT sequence motif is only found in PRTases from the nucleotide synthesis and salvage pathways. Other PRTases, from the tryptophan, histidine and nicotinamide synthetic and salvage pathways, lack the PRT sequence motif and appear to be unrelated to each other and unrelated to the PRT family.; GO: 0009116 nucleoside metabolic process; PDB: 2JBH_A 1Y0B_D 2FXV_B 1GPH_1 1AO0_D 1ORO_B 1VCH_C 2WNS_A 2PRZ_B 2PS1_A ....
Probab=32.67 E-value=1.5e+02 Score=21.17 Aligned_cols=48 Identities=17% Similarity=0.256 Sum_probs=30.4
Q ss_pred ceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCC
Q 019348 54 SLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGA 104 (342)
Q Consensus 54 ~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~ 104 (342)
.++|+++.+.++.+|..|.+.+..... .+..+.+ -+..+...+..++.
T Consensus 4 ~~~~~~~~~~~~~la~~i~~~~~~~~~--ivgi~~~-G~~~a~~la~~l~~ 51 (125)
T PF00156_consen 4 ILSPEQIEALAERLAEQIKESGFDFDV--IVGIPRG-GIPLAAALARALGI 51 (125)
T ss_dssp EEBHHHHHHHHHHHHHHHHHHTTTSSE--EEEETTT-THHHHHHHHHHHTH
T ss_pred EEcHHHHHHHHHHHHHHHHHhCCCCCE--EEeehhc-cHHHHHHHHHHhCC
Confidence 478999999999999999988755433 2322333 33444444444443
No 330
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=32.52 E-value=85 Score=16.76 Aligned_cols=25 Identities=12% Similarity=0.282 Sum_probs=21.6
Q ss_pred CcceeHHHHHHHHHHHHHHHHHcCC
Q 019348 52 DESLSFSQFKSIVIKVSHSFRHLGI 76 (342)
Q Consensus 52 ~~~~Ty~~l~~~~~~la~~L~~~g~ 76 (342)
..++|+.|+.+.+.++-.+..+.|-
T Consensus 2 ~~~i~~~~~~d~a~rv~~f~~~ngR 26 (33)
T PF09373_consen 2 SGTISKEEYLDMASRVNNFYESNGR 26 (33)
T ss_pred CceecHHHHHHHHHHHHHHHHHcCC
Confidence 4689999999999999999987764
No 331
>TIGR01722 MMSDH methylmalonic acid semialdehyde dehydrogenase. In Bacillus, a highly homologous protein to methylmalonic acid semialdehyde dehydrogenase, groups out from the main MMSDH clade with Listeria and Sulfolobus. This Bacillus protein has been suggested to be located in an iol operon and/or involved in myo-inositol catabolism, converting malonic semialdehyde to acetyl CoA ad CO2. The preceeding enzymes responsible for valine catabolism are present in Bacillus, Listeria, and Sulfolobus.
Probab=32.51 E-value=2.6e+02 Score=26.05 Aligned_cols=81 Identities=11% Similarity=-0.052 Sum_probs=50.1
Q ss_pred CCeEEEEccchhHHHHHHH-HHHHHhhcCCeEEEccC-C---CHHHHHHHHHhcc-----ceEEEecHHHHHHHHcCCCC
Q 019348 234 LDHVVLCVLPMFHVFGLSV-ILYDQLQKGNCVVSMGK-F---DIEMALRAIEKYR-----VTVWWVVPPIILALAKNSLV 303 (342)
Q Consensus 234 ~~d~~~~~~p~~~~~g~~~-~~~~~l~~G~~~v~~~~-~---~~~~~~~~i~~~~-----~t~~~~~P~~l~~l~~~~~~ 303 (342)
+--++.+..|+.+...+.. .+..+|.+|.++++-+. . ....+.+++++.+ ++++.........|++++
T Consensus 136 P~Gvv~~I~p~N~P~~~~~~~~~~ALaaGN~VilKps~~~p~~~~~l~~~l~~aglP~g~~~~v~g~~~~~~~L~~~~-- 213 (477)
T TIGR01722 136 PLGVCAGITPFNFPAMIPLWMFPIAIACGNTFVLKPSEKVPSAAVKLAELFSEAGAPDGVLNVVHGDKEAVDRLLEHP-- 213 (477)
T ss_pred ccceEEEEccCChHHHHHHHHHHHHHhcCCEEEeeCcccChHHHHHHHHHHHHhCcCCCeEEEEeCCHHHHHHHHcCC--
Confidence 3357778888777655432 35588999999988643 3 3455666666653 344444445666776654
Q ss_pred CccCCCCceEEEeecccCC
Q 019348 304 RKFDISSLKLVGSGAAPLG 322 (342)
Q Consensus 304 ~~~~l~~lr~~~~gG~~l~ 322 (342)
.++.+.++|+.-.
T Consensus 214 ------~v~~V~ftGS~~~ 226 (477)
T TIGR01722 214 ------DVKAVSFVGSTPI 226 (477)
T ss_pred ------CcCEEEEECCHHH
Confidence 3566777765433
No 332
>cd07124 ALDH_PutA-P5CDH-RocA Delta(1)-pyrroline-5-carboxylate dehydrogenase, RocA. Delta(1)-pyrroline-5-carboxylate dehydrogenase (EC=1.5.1.12 ), RocA: a proline catabolic enzyme of the aldehyde dehydrogenase (ALDH) protein superfamily. The proline catabolic enzymes, proline dehydrogenase and Delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH), catalyze the two-step oxidation of proline to glutamate; P5CDH catalyzes the oxidation of glutamate semialdehyde, utilizing NAD+ as the electron acceptor. In some bacteria, the two enzymes are fused into the bifunctional flavoenzyme, proline utilization A (PutA). In this CD, monofunctional enzyme sequences such as seen in the Bacillus subtilis RocA P5CDH are also present. These enzymes play important roles in cellular redox control, superoxide generation, and apoptosis.
Probab=32.48 E-value=2.1e+02 Score=26.97 Aligned_cols=80 Identities=14% Similarity=0.034 Sum_probs=49.5
Q ss_pred CCeEEEEccchhHHHHHH-HHHHHHhhcCCeEEEccC-C---CHHHHHHHHHhcc--ceEEEecH----HHHHHHHcCCC
Q 019348 234 LDHVVLCVLPMFHVFGLS-VILYDQLQKGNCVVSMGK-F---DIEMALRAIEKYR--VTVWWVVP----PIILALAKNSL 302 (342)
Q Consensus 234 ~~d~~~~~~p~~~~~g~~-~~~~~~l~~G~~~v~~~~-~---~~~~~~~~i~~~~--~t~~~~~P----~~l~~l~~~~~ 302 (342)
+--++++..|+.+...+. ..+..+|.+|.++++-+. . ....+.+++.+.+ ...+.+++ ..-..|..++
T Consensus 166 P~GVv~~I~pwN~P~~~~~~~i~~ALaaGN~VVlKPs~~tp~~~~~l~~~~~~aGlP~gvv~vv~g~~~~~~~~L~~~~- 244 (512)
T cd07124 166 PLGVGAVISPWNFPLAILAGMTTAALVTGNTVVLKPAEDTPVIAAKLVEILEEAGLPPGVVNFLPGPGEEVGDYLVEHP- 244 (512)
T ss_pred cceEEEEECCCChHHHHHHHHHHHHHHcCCEEEEECCccccHHHHHHHHHHHHhCcCCCceEEeccCchHHHHHHhcCC-
Confidence 345788888887765542 458899999999998643 2 3455666666642 23333332 3446666554
Q ss_pred CCccCCCCceEEEeecccC
Q 019348 303 VRKFDISSLKLVGSGAAPL 321 (342)
Q Consensus 303 ~~~~~l~~lr~~~~gG~~l 321 (342)
.++.+.++|+.-
T Consensus 245 -------~v~~V~fTGs~~ 256 (512)
T cd07124 245 -------DVRFIAFTGSRE 256 (512)
T ss_pred -------CCCEEEEeCchH
Confidence 456666666543
No 333
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=32.47 E-value=1.8e+02 Score=27.42 Aligned_cols=34 Identities=9% Similarity=0.075 Sum_probs=21.3
Q ss_pred CCCEEEEECCCCChHHHHHHHHHHhCCeEeccCC
Q 019348 78 KKDVVLIFAPNSIHFPICFLGVIAIGAIASTANP 111 (342)
Q Consensus 78 ~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~ 111 (342)
.|.+|+|..+....+-++-+..-.+|..++....
T Consensus 294 ~Gkrv~I~gd~~~a~~l~~~L~~ElG~~vv~~gt 327 (511)
T TIGR01278 294 TGKRAFVFGDATHAVGMTKILARELGIHIVGAGT 327 (511)
T ss_pred cCCeEEEEcCcHHHHHHHHHHHHhCCCEEEecCC
Confidence 4778988887554444444444468887766543
No 334
>cd07111 ALDH_F16 Aldehyde dehydrogenase family 16A1-like. Uncharacterized aldehyde dehydrogenase family 16 member A1 (ALDH16A1) and other related sequences are present in this CD. The active site cysteine and glutamate residues are not conserved in the human ALDH16A1 protein sequence.
Probab=32.31 E-value=2.5e+02 Score=26.29 Aligned_cols=80 Identities=15% Similarity=0.028 Sum_probs=48.9
Q ss_pred CCeEEEEccchhHHHHHHH-HHHHHhhcCCeEEEccC-C---CHHHHHHHHHhcc-----ceEEEecHHHHHHHHcCCCC
Q 019348 234 LDHVVLCVLPMFHVFGLSV-ILYDQLQKGNCVVSMGK-F---DIEMALRAIEKYR-----VTVWWVVPPIILALAKNSLV 303 (342)
Q Consensus 234 ~~d~~~~~~p~~~~~g~~~-~~~~~l~~G~~~v~~~~-~---~~~~~~~~i~~~~-----~t~~~~~P~~l~~l~~~~~~ 303 (342)
+--+++...|+.+...+.. .+..+|.+|.++++-+. . ....+.+++++.+ ++++......-..|++++
T Consensus 147 P~GVV~~I~PwN~P~~~~~~~i~~ALaaGN~VVlKps~~tp~~~~~l~~~~~~aGlP~gvv~~v~g~~~~~~~l~~~~-- 224 (480)
T cd07111 147 PVGVVGQIVPWNFPLLMLAWKICPALAMGNTVVLKPAEYTPLTALLFAEICAEAGLPPGVLNIVTGNGSFGSALANHP-- 224 (480)
T ss_pred ecceEEEECCCccHHHHHHHHHHHHHHcCCEEEEECCCCChHHHHHHHHHHHhcCCCcccEEEEeCCchHHHHHhcCC--
Confidence 3457888888888766533 37789999999998654 3 3355666666653 233333234445555544
Q ss_pred CccCCCCceEEEeecccC
Q 019348 304 RKFDISSLKLVGSGAAPL 321 (342)
Q Consensus 304 ~~~~l~~lr~~~~gG~~l 321 (342)
.++.+.++|+.-
T Consensus 225 ------~v~~v~ftGs~~ 236 (480)
T cd07111 225 ------GVDKVAFTGSTE 236 (480)
T ss_pred ------CcCEEEEECCHH
Confidence 355666666443
No 335
>TIGR01203 HGPRTase hypoxanthine phosphoribosyltransferase. Sequence differences as small as a single residue can affect whether members of this family act on hypoxanthine and guanine or hypoxanthine only. The designation of this model as equivalog reflects hypoxanthine specificity and does not reflect whether or not guanine can replace hypoxanthine.
Probab=32.27 E-value=1.6e+02 Score=22.83 Aligned_cols=20 Identities=10% Similarity=0.160 Sum_probs=18.4
Q ss_pred eeHHHHHHHHHHHHHHHHHc
Q 019348 55 LSFSQFKSIVIKVSHSFRHL 74 (342)
Q Consensus 55 ~Ty~~l~~~~~~la~~L~~~ 74 (342)
+||.|+.+.+.++|..+.+.
T Consensus 3 is~~~i~~~i~~lA~~I~~~ 22 (166)
T TIGR01203 3 IPEEQIKARIAELAKQITED 22 (166)
T ss_pred cCHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999764
No 336
>PRK14807 histidinol-phosphate aminotransferase; Provisional
Probab=32.26 E-value=3.5e+02 Score=23.79 Aligned_cols=55 Identities=29% Similarity=0.396 Sum_probs=31.7
Q ss_pred CCCCCEEEEECCCCChHHHHHHHHHHhCCeEeccCCC----CCHHHHHHHhhhcCceEEEEc
Q 019348 76 ITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPV----YTVSELSKQVKDSNPKLVITV 133 (342)
Q Consensus 76 ~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~----~~~~~l~~~l~~~~~~~vi~~ 133 (342)
+++||.|++--| .+.....++...|+..+.++.. ...+++...+...++++++..
T Consensus 97 ~~~gd~Vlv~~p---~y~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~~~~~k~v~l~ 155 (351)
T PRK14807 97 INKGDVVIYPHP---SFAMYSVYSKIAGAVEIPVKLKEDYTYDVGSFIKVIEKYQPKLVFLC 155 (351)
T ss_pred cCCCCEEEEeCC---ChHHHHHHHHHcCCeEEEeecCCCCCCCHHHHHHHhhccCCCEEEEe
Confidence 467888877533 2333444556677765555432 345666666655566766643
No 337
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=32.13 E-value=2e+02 Score=20.85 Aligned_cols=38 Identities=8% Similarity=-0.038 Sum_probs=31.2
Q ss_pred HHHHHhCCeEeccCCCCCHHHHHHHhhhcCceEEEEcc
Q 019348 97 LGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVP 134 (342)
Q Consensus 97 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~ 134 (342)
...-..|.-++.+.+..+.+++.....+.+|++|..+.
T Consensus 21 ~~l~~~G~~vi~lG~~vp~e~~~~~a~~~~~d~V~iS~ 58 (122)
T cd02071 21 RALRDAGFEVIYTGLRQTPEEIVEAAIQEDVDVIGLSS 58 (122)
T ss_pred HHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEcc
Confidence 33456778888888999999999999999999988764
No 338
>PRK09457 astD succinylglutamic semialdehyde dehydrogenase; Reviewed
Probab=32.12 E-value=3.2e+02 Score=25.64 Aligned_cols=79 Identities=16% Similarity=-0.004 Sum_probs=48.3
Q ss_pred CCeEEEEccchhHHHHHH-HHHHHHhhcCCeEEEccC-C---CHHHHHHHHHhcc--ce---EEEecHHHHHHHHcCCCC
Q 019348 234 LDHVVLCVLPMFHVFGLS-VILYDQLQKGNCVVSMGK-F---DIEMALRAIEKYR--VT---VWWVVPPIILALAKNSLV 303 (342)
Q Consensus 234 ~~d~~~~~~p~~~~~g~~-~~~~~~l~~G~~~v~~~~-~---~~~~~~~~i~~~~--~t---~~~~~P~~l~~l~~~~~~ 303 (342)
+--+++...|+.+...+. ..+..+|.+|.++++=+. . ....+.+++.+.+ .. ++......-..|..++
T Consensus 134 P~GVv~~I~PwN~P~~~~~~~~~~ALaaGN~VvlKPs~~tp~t~~~l~~l~~~aGlP~gvv~~v~g~~~~~~~L~~~~-- 211 (487)
T PRK09457 134 PHGVVAVFGPYNFPGHLPNGHIVPALLAGNTVVFKPSELTPWVAELTVKLWQQAGLPAGVLNLVQGGRETGKALAAHP-- 211 (487)
T ss_pred ccEEEEEECCCchHHHHHHHHHHHHHHcCCEEEEECCCCCcHHHHHHHHHHHHhCcCcCeEEEEeCCHHHHHHHhcCC--
Confidence 446788888887765432 347789999999998643 2 3355666676653 23 3333234455565554
Q ss_pred CccCCCCceEEEeeccc
Q 019348 304 RKFDISSLKLVGSGAAP 320 (342)
Q Consensus 304 ~~~~l~~lr~~~~gG~~ 320 (342)
.++.+.+.|+.
T Consensus 212 ------~v~~V~fTGS~ 222 (487)
T PRK09457 212 ------DIDGLLFTGSA 222 (487)
T ss_pred ------CcCEEEEECCH
Confidence 46677666643
No 339
>PRK13391 acyl-CoA synthetase; Provisional
Probab=31.87 E-value=4.2e+02 Score=24.60 Aligned_cols=98 Identities=9% Similarity=0.015 Sum_probs=64.7
Q ss_pred CCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhh-ccccCCCeEEEEccchhHHHHHHHHHHHHhhcCCeEEEcc
Q 019348 190 KQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQ-ELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMG 268 (342)
Q Consensus 190 ~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~-~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~ 268 (342)
.++.++++...+| ..+|...+...+..+.... ..+..+++++....+-... ++..++.++..|+..+..+
T Consensus 10 ~p~~~a~~~~~~~-------~~~ty~~l~~~~~~la~~L~~~g~~~~~~V~v~~~~~~~--~~~~~~a~~~~G~~~~~l~ 80 (511)
T PRK13391 10 TPDKPAVIMASTG-------EVVTYRELDERSNRLAHLFRSLGLKRGDHVAIFMENNLR--YLEVCWAAERSGLYYTCVN 80 (511)
T ss_pred CCCceEEEecCCC-------CEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHH--HHHHHHHHHHhccEEeccc
Confidence 4556666554332 1367777766544432221 2235567887777666543 3366889999999988774
Q ss_pred -CCCHHHHHHHHHhccceEEEecHHHHHH
Q 019348 269 -KFDIEMALRAIEKYRVTVWWVVPPIILA 296 (342)
Q Consensus 269 -~~~~~~~~~~i~~~~~t~~~~~P~~l~~ 296 (342)
......+...+++.++..+.+.+.....
T Consensus 81 ~~~~~~~l~~~l~~~~~~~li~~~~~~~~ 109 (511)
T PRK13391 81 SHLTPAEAAYIVDDSGARALITSAAKLDV 109 (511)
T ss_pred cccCHHHHHHHHhccCCcEEEEchhhHHH
Confidence 4678899999999999999888765543
No 340
>PRK07768 long-chain-fatty-acid--CoA ligase; Validated
Probab=31.87 E-value=4.1e+02 Score=24.94 Aligned_cols=92 Identities=11% Similarity=0.046 Sum_probs=58.5
Q ss_pred CCCceEEEeCCCC-------cceeHHHHHHHHHHHHHHHHHcCCCCC-CEEEEECCCCC--hHHHHHHHHHHhCCeEecc
Q 019348 40 YSSKLALIDADSD-------ESLSFSQFKSIVIKVSHSFRHLGITKK-DVVLIFAPNSI--HFPICFLGVIAIGAIASTA 109 (342)
Q Consensus 40 ~p~~~a~~~~~~~-------~~~Ty~~l~~~~~~la~~L~~~g~~~g-~~V~i~~~n~~--~~~~~~lA~~~~G~~~v~l 109 (342)
.++.++++...++ -.+|.+.+...+..+.. ..++.++ |++...+|-.. .++..+++.+..|+..+.+
T Consensus 150 ~~~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~---~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~v~~ 226 (545)
T PRK07768 150 GEDDLALMQLTSGSTGSPKAVQITHGNLYANAEAMFV---AAEFDVETDVMVSWLPLFHDMGMVGFLTVPMYFGAELVKV 226 (545)
T ss_pred CCCCEEEEEeCCCCCCCCceEEEcHHHHHHHHHHHHH---hcCCCCCCceeEEeCCCccchHHHHHHHHHHHCCceEEEe
Confidence 3466776644322 46888888665544433 3466665 77777766543 3444566778889887776
Q ss_pred CCCC---CHHHHHHHhhhcCceEEEEcc
Q 019348 110 NPVY---TVSELSKQVKDSNPKLVITVP 134 (342)
Q Consensus 110 ~~~~---~~~~l~~~l~~~~~~~vi~~~ 134 (342)
.+.. .+.....++++.++.++.+..
T Consensus 227 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 254 (545)
T PRK07768 227 TPMDFLRDPLLWAELISKYRGTMTAAPN 254 (545)
T ss_pred CHHHHHHhHHHHHHHHHHhCCEEEECch
Confidence 5532 455677889999998875543
No 341
>cd07105 ALDH_SaliADH Salicylaldehyde dehydrogenase, DoxF-like. Salicylaldehyde dehydrogenase (DoxF, SaliADH, EC=1.2.1.65) involved in the upper naphthalene catabolic pathway of Pseudomonas strain C18 and other similar sequences are present in this CD.
Probab=31.65 E-value=2.4e+02 Score=25.91 Aligned_cols=79 Identities=22% Similarity=0.138 Sum_probs=47.9
Q ss_pred CCeEEEEccchhHHHHHH-HHHHHHhhcCCeEEEccC-C---CHHHHHHHHHhcc--ceEEEecH-------HHHHHHHc
Q 019348 234 LDHVVLCVLPMFHVFGLS-VILYDQLQKGNCVVSMGK-F---DIEMALRAIEKYR--VTVWWVVP-------PIILALAK 299 (342)
Q Consensus 234 ~~d~~~~~~p~~~~~g~~-~~~~~~l~~G~~~v~~~~-~---~~~~~~~~i~~~~--~t~~~~~P-------~~l~~l~~ 299 (342)
+--+++...|+.+..... ..+..+|..|.++++-++ . ....+.+++.+.+ ..++..++ .+...|..
T Consensus 98 P~GVV~~I~p~N~P~~~~~~~~~~ALaaGN~VVlKps~~~p~~~~~l~~~~~~aGlP~gv~~~v~g~~~~~~~~~~~l~~ 177 (432)
T cd07105 98 PVGVVLGIAPWNAPVILGTRAIAYPLAAGNTVVLKASELSPRTHWLIGRVFHEAGLPKGVLNVVTHSPEDAPEVVEALIA 177 (432)
T ss_pred cceEEEEECCcCcHHHHHHHHHHHHHhcCCEEEEECCccChHHHHHHHHHHHHcCcCCCcEEEEeCCCCchHHHHHHHhc
Confidence 445677777777765542 347899999999998643 2 3455666666642 23333332 35566766
Q ss_pred CCCCCccCCCCceEEEeeccc
Q 019348 300 NSLVRKFDISSLKLVGSGAAP 320 (342)
Q Consensus 300 ~~~~~~~~l~~lr~~~~gG~~ 320 (342)
++ .++.+.++|+.
T Consensus 178 ~~--------~v~~v~ftGs~ 190 (432)
T cd07105 178 HP--------AVRKVNFTGST 190 (432)
T ss_pred CC--------CCCEEEEECCH
Confidence 54 35666666643
No 342
>PF08479 POTRA_2: POTRA domain, ShlB-type; InterPro: IPR013686 The POTRA domain (for polypeptide-transport-associated domain) is found towards the N terminus of ShlB family proteins (IPR005565 from INTERPRO). ShlB is important in the secretion and activation of the haemolysin ShlA. It has been postulated that the POTRA domain has a chaperone-like function over ShlA; it may fold back into the C-terminal beta-barrel channel []. ; PDB: 2X8X_X 2QDZ_A 3NJT_A 3MC8_A 3MC9_B.
Probab=31.40 E-value=82 Score=20.52 Aligned_cols=26 Identities=12% Similarity=0.367 Sum_probs=22.5
Q ss_pred CcceeHHHHHHHHHHHHHHHHHcCCC
Q 019348 52 DESLSFSQFKSIVIKVSHSFRHLGIT 77 (342)
Q Consensus 52 ~~~~Ty~~l~~~~~~la~~L~~~g~~ 77 (342)
++.+|.+++.+.++++..++++.|.-
T Consensus 28 g~~l~~~~l~~~~~~l~~~y~~~GY~ 53 (76)
T PF08479_consen 28 GRCLTLADLQQLADALTNYYREKGYI 53 (76)
T ss_dssp TSBB-HHHHHHHHHHHHHHHHHTT-T
T ss_pred CCCcCHHHHHHHHHHHHHHHHHcCce
Confidence 78999999999999999999999874
No 343
>PTZ00271 hypoxanthine-guanine phosphoribosyltransferase; Provisional
Probab=31.21 E-value=1.4e+02 Score=24.31 Aligned_cols=47 Identities=9% Similarity=-0.033 Sum_probs=31.7
Q ss_pred ceeHHHHHHHHHHHHHHHHHcCCC----CC-CEEEEECCCCChHHHHHHHHH
Q 019348 54 SLSFSQFKSIVIKVSHSFRHLGIT----KK-DVVLIFAPNSIHFPICFLGVI 100 (342)
Q Consensus 54 ~~Ty~~l~~~~~~la~~L~~~g~~----~g-~~V~i~~~n~~~~~~~~lA~~ 100 (342)
-+|++|+.+++.++|..+.+..-. .+ ..|.+..-++--.+++.|+=.
T Consensus 27 lis~e~I~~~i~~LA~~I~~~~~~~~~~~~~~~vivgVlkGg~~fa~dL~r~ 78 (211)
T PTZ00271 27 LVTQEQVWAATAKCAKKIAEDYRSFKLTTENPLYLLCVLKGSFIFTADLARF 78 (211)
T ss_pred ecCHHHHHHHHHHHHHHHHHHhhhccccCCCCeEEEEEcCCCHHHHHHHHHH
Confidence 589999999999999999764211 12 345666667755555555433
No 344
>PLN02278 succinic semialdehyde dehydrogenase
Probab=31.16 E-value=2.3e+02 Score=26.65 Aligned_cols=79 Identities=18% Similarity=0.026 Sum_probs=48.0
Q ss_pred CCeEEEEccchhHHHHHHH-HHHHHhhcCCeEEEccC-CC---HHHHHHHHHhc--cceEEEecH----HHHHHHHcCCC
Q 019348 234 LDHVVLCVLPMFHVFGLSV-ILYDQLQKGNCVVSMGK-FD---IEMALRAIEKY--RVTVWWVVP----PIILALAKNSL 302 (342)
Q Consensus 234 ~~d~~~~~~p~~~~~g~~~-~~~~~l~~G~~~v~~~~-~~---~~~~~~~i~~~--~~t~~~~~P----~~l~~l~~~~~ 302 (342)
+--++++..|+.+...+.. .+..+|.+|.++++-+. .. ...+.+++.+. ....+.+++ ..-..|+.++
T Consensus 160 P~GvV~~I~PwN~P~~~~~~~i~~ALaaGN~VVlKps~~tp~~~~~l~~~l~eaglP~gvv~~v~g~~~~~~~~L~~~~- 238 (498)
T PLN02278 160 PVGVVGAITPWNFPLAMITRKVGPALAAGCTVVVKPSELTPLTALAAAELALQAGIPPGVLNVVMGDAPEIGDALLASP- 238 (498)
T ss_pred cccEEEEECCCccHHHHHHHHHHHHHHcCCEEEEECCCCChHHHHHHHHHHHHcCCCcccEEEEecCChhhHHHHhcCC-
Confidence 4457888888888765533 58899999999998643 33 34455556553 223333322 3456666654
Q ss_pred CCccCCCCceEEEeeccc
Q 019348 303 VRKFDISSLKLVGSGAAP 320 (342)
Q Consensus 303 ~~~~~l~~lr~~~~gG~~ 320 (342)
.++.+.++|+.
T Consensus 239 -------~v~~V~fTGS~ 249 (498)
T PLN02278 239 -------KVRKITFTGST 249 (498)
T ss_pred -------CcCEEEEECcH
Confidence 45666666643
No 345
>PRK11761 cysM cysteine synthase B; Provisional
Probab=31.06 E-value=3.5e+02 Score=23.34 Aligned_cols=89 Identities=10% Similarity=0.012 Sum_probs=59.2
Q ss_pred ceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcC-CCCCCEEEEECCCCChHHHHHHHHHHhCCeEeccCCCCCHHHHHHH
Q 019348 43 KLALIDADSDESLSFSQFKSIVIKVSHSFRHLG-ITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQ 121 (342)
Q Consensus 43 ~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g-~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~ 121 (342)
++.+.....+-+=|+++ +-+..+...+.+.| +.+|+.|.. ...+-.-..+-++|...|.-+..+-|...+......
T Consensus 28 ~i~~K~E~~nptGS~K~--R~a~~~~~~a~~~g~~~~g~~vv~-aSsGN~g~alA~~a~~~G~~~~i~~p~~~~~~k~~~ 104 (296)
T PRK11761 28 TILAKLEGNNPAGSVKD--RPALSMIVQAEKRGEIKPGDTLIE-ATSGNTGIALAMIAAIKGYRMKLIMPENMSQERRAA 104 (296)
T ss_pred EEEEEEcccCCCCCchh--HHHHHHHHHHHHcCCCCCCCEEEE-eCCChHHHHHHHHHHHcCCCEEEEECCCCCHHHHHH
Confidence 56666554445556655 23333444444555 467776544 455666777778888899877666666666678889
Q ss_pred hhhcCceEEEEcc
Q 019348 122 VKDSNPKLVITVP 134 (342)
Q Consensus 122 l~~~~~~~vi~~~ 134 (342)
++..++++++++.
T Consensus 105 ~~~~GA~v~~~~~ 117 (296)
T PRK11761 105 MRAYGAELILVPK 117 (296)
T ss_pred HHHcCCEEEEeCC
Confidence 9999999999986
No 346
>PRK09406 gabD1 succinic semialdehyde dehydrogenase; Reviewed
Probab=30.92 E-value=2.5e+02 Score=26.02 Aligned_cols=82 Identities=12% Similarity=0.007 Sum_probs=49.3
Q ss_pred CCCeEEEEccchhHHHHHHH-HHHHHhhcCCeEEEccC-C---CHHHHHHHHHhcc--ceEEEe---cHHHHHHHHcCCC
Q 019348 233 ELDHVVLCVLPMFHVFGLSV-ILYDQLQKGNCVVSMGK-F---DIEMALRAIEKYR--VTVWWV---VPPIILALAKNSL 302 (342)
Q Consensus 233 ~~~d~~~~~~p~~~~~g~~~-~~~~~l~~G~~~v~~~~-~---~~~~~~~~i~~~~--~t~~~~---~P~~l~~l~~~~~ 302 (342)
.+--+++...|+.+...+.. .+..+|..|.++++=++ . ....+.+++++.+ ..++.+ -......++.++
T Consensus 122 ~P~GvV~~I~PwN~Pl~~~~~~~~~ALaaGN~VV~Kps~~~p~~~~~l~~l~~~aGlP~gvv~~v~~g~~~~~~l~~~~- 200 (457)
T PRK09406 122 QPLGVVLAVMPWNFPLWQVVRFAAPALMAGNVGLLKHASNVPQTALYLADLFRRAGFPDGCFQTLLVGSGAVEAILRDP- 200 (457)
T ss_pred ecceeEEEECCccchHHHHHHHHHHHHHcCCEEEEECCCcCcHHHHHHHHHHHHhCCCcCcEEEEcCCchhHHHHhcCC-
Confidence 34467777788877655433 47889999999988643 2 3356667777653 223222 234455565544
Q ss_pred CCccCCCCceEEEeecccCC
Q 019348 303 VRKFDISSLKLVGSGAAPLG 322 (342)
Q Consensus 303 ~~~~~l~~lr~~~~gG~~l~ 322 (342)
.++.+.+.|+.-.
T Consensus 201 -------~i~~V~fTGs~~~ 213 (457)
T PRK09406 201 -------RVAAATLTGSEPA 213 (457)
T ss_pred -------CcCEEEEECcHHH
Confidence 4666776665443
No 347
>PRK05205 bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase; Provisional
Probab=30.84 E-value=1.8e+02 Score=22.77 Aligned_cols=47 Identities=15% Similarity=0.166 Sum_probs=30.1
Q ss_pred cceeHHHHHHHHHHHHHHHHHc--CCCCCCEEEEECCCCChHHHHHHHHHH
Q 019348 53 ESLSFSQFKSIVIKVSHSFRHL--GITKKDVVLIFAPNSIHFPICFLGVIA 101 (342)
Q Consensus 53 ~~~Ty~~l~~~~~~la~~L~~~--g~~~g~~V~i~~~n~~~~~~~~lA~~~ 101 (342)
.-+|+.|+.+++.++|..+.+. |.+ ..+.+...++-..++..++-..
T Consensus 5 ~l~s~~~i~~~i~~la~~i~~~~~~~~--~~viv~il~gG~~~a~~La~~L 53 (176)
T PRK05205 5 EILDAEALRRALTRIAHEIIERNKGLD--NLVLVGIKTRGVWLAERLAERL 53 (176)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHcCCCC--CeEEEEEccCCHHHHHHHHHHH
Confidence 3589999999999999999774 322 2344444555444444444433
No 348
>PRK15423 hypoxanthine phosphoribosyltransferase; Provisional
Probab=30.81 E-value=1.6e+02 Score=23.27 Aligned_cols=45 Identities=11% Similarity=0.056 Sum_probs=29.4
Q ss_pred ceeHHHHHHHHHHHHHHHHHcCCCCC-CEEEEECCCCChHHHHHHH
Q 019348 54 SLSFSQFKSIVIKVSHSFRHLGITKK-DVVLIFAPNSIHFPICFLG 98 (342)
Q Consensus 54 ~~Ty~~l~~~~~~la~~L~~~g~~~g-~~V~i~~~n~~~~~~~~lA 98 (342)
-+|.+|+.+++.++|..+.+.--..| +.+.+...++-..++..++
T Consensus 8 l~~~~~i~~~i~~lA~~I~~~~~~~~~~~vvvgI~~Gg~~fa~~L~ 53 (178)
T PRK15423 8 MIPEAEIKARIAELGRQITERYKDSGSDMVLVGLLRGSFMFMADLC 53 (178)
T ss_pred ecCHHHHHHHHHHHHHHHHHHhcccCCCeEEEEEecCChHHHHHHH
Confidence 47899999999999999976421112 3455555555554444444
No 349
>cd04910 ACT_AK-Ectoine_1 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinase
Probab=30.69 E-value=1.5e+02 Score=19.35 Aligned_cols=51 Identities=20% Similarity=0.290 Sum_probs=37.5
Q ss_pred HHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCCHHHHHHHHHhCCCCcc
Q 019348 273 EMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATI 338 (342)
Q Consensus 273 ~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l 338 (342)
..+++.+.+++++++.- ..+-.++-..+.+....-..+.+.++++||+..+
T Consensus 19 ~~i~~~l~~~~v~ii~K---------------~~nANtit~yl~~~~k~~~r~~~~Le~~~p~a~i 69 (71)
T cd04910 19 LEILELLQRFKVSIIAK---------------DTNANTITHYLAGSLKTIKRLTEDLENRFPNAEI 69 (71)
T ss_pred HHHHHHHHHcCCeEEEE---------------ecCCCeEEEEEEcCHHHHHHHHHHHHHhCccCcc
Confidence 67888899999998754 1233456666666666778999999999986654
No 350
>cd06534 ALDH-SF NAD(P)+-dependent aldehyde dehydrogenase superfamily. The aldehyde dehydrogenase superfamily (ALDH-SF) of NAD(P)+-dependent enzymes, in general, oxidize a wide range of endogenous and exogenous aliphatic and aromatic aldehydes to their corresponding carboxylic acids and play an important role in detoxification. Besides aldehyde detoxification, many ALDH isozymes possess multiple additional catalytic and non-catalytic functions such as participating in metabolic pathways, or as binding proteins, or osmoregulants, to mention a few. The enzyme has three domains, a NAD(P)+ cofactor-binding domain, a catalytic domain, and a bridging domain; and the active enzyme is generally either homodimeric or homotetrameric. The catalytic mechanism is proposed to involve cofactor binding, resulting in a conformational change and activation of an invariant catalytic cysteine nucleophile. The cysteine and aldehyde substrate form an oxyanion thiohemiacetal intermediate resulting in hydri
Probab=30.52 E-value=3.9e+02 Score=23.73 Aligned_cols=78 Identities=17% Similarity=0.003 Sum_probs=46.6
Q ss_pred CCeEEEEccchhHHHH-HHHHHHHHhhcCCeEEEccC-C---CHHHHHHHHHhcc-----ceEEEecHH-HHHHHHcCCC
Q 019348 234 LDHVVLCVLPMFHVFG-LSVILYDQLQKGNCVVSMGK-F---DIEMALRAIEKYR-----VTVWWVVPP-IILALAKNSL 302 (342)
Q Consensus 234 ~~d~~~~~~p~~~~~g-~~~~~~~~l~~G~~~v~~~~-~---~~~~~~~~i~~~~-----~t~~~~~P~-~l~~l~~~~~ 302 (342)
+-.++++..|..+... .+..++.+|..|.++++-+. . ....+.+.+.+.. ++++..... ..+.|+.++
T Consensus 92 p~Gvv~~i~p~n~p~~~~~~~~~~aL~~GN~vilk~s~~~~~~~~~l~~~l~~ag~p~~~v~~~~~~~~~~~~~l~~~~- 170 (367)
T cd06534 92 PLGVVGVITPWNFPLLLAAWKLAPALAAGNTVVLKPSELTPLTALALAELLQEAGLPPGVVNVVPGGGDEVGAALLSHP- 170 (367)
T ss_pred eeeEEEEECCCchHHHHHHHHHHHHHHcCCEEEEECCCcchHHHHHHHHHHHhcCCCcCeEEEEEcCchhHHHHHhcCC-
Confidence 3456677777766544 33567899999999887643 2 3456666666654 333333332 556666554
Q ss_pred CCccCCCCceEEEeecc
Q 019348 303 VRKFDISSLKLVGSGAA 319 (342)
Q Consensus 303 ~~~~~l~~lr~~~~gG~ 319 (342)
.++.+.+.|+
T Consensus 171 -------~vd~v~~tGs 180 (367)
T cd06534 171 -------RVDKISFTGS 180 (367)
T ss_pred -------CcCEEEEECC
Confidence 3556666663
No 351
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=30.20 E-value=2e+02 Score=20.27 Aligned_cols=48 Identities=10% Similarity=0.059 Sum_probs=32.5
Q ss_pred cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeEe
Q 019348 53 ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIAS 107 (342)
Q Consensus 53 ~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v 107 (342)
..+.+.++.+ .+.+.+..+++.|.++|.++.....+...+...|..-+
T Consensus 41 iniP~~~l~~-------~l~~l~~~~~~~IVlyC~~G~rS~~aa~~L~~~G~~~v 88 (104)
T PRK10287 41 INIPLKEVKE-------RIATAVPDKNDTVKLYCNAGRQSGQAKEILSEMGYTHA 88 (104)
T ss_pred EECCHHHHHH-------HHHhcCCCCCCeEEEEeCCChHHHHHHHHHHHcCCCeE
Confidence 3456655433 34445555667899999988877777777778886544
No 352
>PRK03137 1-pyrroline-5-carboxylate dehydrogenase; Provisional
Probab=30.18 E-value=3.4e+02 Score=25.61 Aligned_cols=79 Identities=10% Similarity=-0.016 Sum_probs=48.8
Q ss_pred CCeEEEEccchhHHHHHH-HHHHHHhhcCCeEEEccC-C---CHHHHHHHHHhcc--ce---EEEec-HHHHHHHHcCCC
Q 019348 234 LDHVVLCVLPMFHVFGLS-VILYDQLQKGNCVVSMGK-F---DIEMALRAIEKYR--VT---VWWVV-PPIILALAKNSL 302 (342)
Q Consensus 234 ~~d~~~~~~p~~~~~g~~-~~~~~~l~~G~~~v~~~~-~---~~~~~~~~i~~~~--~t---~~~~~-P~~l~~l~~~~~ 302 (342)
+--++++..|+.+...+. ..+..+|..|.++++-+. . ....+.+++.+.+ .. ++... ...-..|..++
T Consensus 171 P~GVv~~I~PwN~P~~~~~~~i~~ALaaGN~VVlKPs~~tp~~a~~l~~~l~~aGlP~gvv~vv~g~~~~~~~~L~~~~- 249 (514)
T PRK03137 171 PLGVGVVISPWNFPFAIMAGMTLAAIVAGNTVLLKPASDTPVIAAKFVEVLEEAGLPAGVVNFVPGSGSEVGDYLVDHP- 249 (514)
T ss_pred cCcEEEEECCCccHHHHHHHHHHHHHHcCCEEEEECCCCCcHHHHHHHHHHHHhCCCCCcEEEeecCchHHHHHHhcCC-
Confidence 345888888888765543 357899999999998643 2 3455666666653 33 33332 23445566554
Q ss_pred CCccCCCCceEEEeeccc
Q 019348 303 VRKFDISSLKLVGSGAAP 320 (342)
Q Consensus 303 ~~~~~l~~lr~~~~gG~~ 320 (342)
.++.+.++|+.
T Consensus 250 -------~v~~V~fTGs~ 260 (514)
T PRK03137 250 -------KTRFITFTGSR 260 (514)
T ss_pred -------CcCEEEEECCc
Confidence 46667666644
No 353
>PF14552 Tautomerase_2: Tautomerase enzyme; PDB: 2AAG_C 2AAL_A 2AAJ_A 1MWW_C.
Probab=30.15 E-value=79 Score=21.25 Aligned_cols=52 Identities=23% Similarity=0.341 Sum_probs=29.6
Q ss_pred CCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCCCh
Q 019348 40 YSSKLALIDADSDESLSFSQFKSIVIKVSHSFRH-LGITKKDVVLIFAPNSIH 91 (342)
Q Consensus 40 ~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~-~g~~~g~~V~i~~~n~~~ 91 (342)
+.++..++.......-|-++=.+.-+.++..|.+ .|+.+.|...++..|..+
T Consensus 25 Rs~~~v~I~It~~~gRs~e~K~~ly~~l~~~L~~~~gi~p~Dv~I~l~e~~~e 77 (82)
T PF14552_consen 25 RSDDFVIIQITSGAGRSTEQKKALYRALAERLAEKLGIRPEDVMIVLVENPRE 77 (82)
T ss_dssp S-TT-EEEEEEECS---HHHHHHHHHHHHHHHHHHH---GGGEEEEEEEE-GG
T ss_pred CCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEECCcc
Confidence 3455555443324456667777778888899965 799999988888777654
No 354
>COG4009 Uncharacterized protein conserved in archaea [Function unknown]
Probab=30.12 E-value=1.7e+02 Score=19.46 Aligned_cols=66 Identities=9% Similarity=0.186 Sum_probs=50.4
Q ss_pred cceeHHHHHHHHHHHHH---HHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeEeccCCCCCHHHHHHHhhhcCceE
Q 019348 53 ESLSFSQFKSIVIKVSH---SFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKL 129 (342)
Q Consensus 53 ~~~Ty~~l~~~~~~la~---~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ 129 (342)
...||.+|.+.-+.+++ .|....+...|.++|+-=++... .-++.++...+.+++.+.+++.++..
T Consensus 8 gi~t~keL~eE~~~Fv~~kA~l~k~~L~dDde~aIfnI~gT~S-----------y~V~Fl~~~~s~eev~~ele~mga~i 76 (88)
T COG4009 8 GIATYKELDEELKDFVRLKAHLAKVDLNDDDELAIFNIEGTSS-----------YYVVFLEEVESEEEVERELEDMGAEI 76 (88)
T ss_pred hheeHHhhhHHHHHHHHHHHHhcccccCCCCcEEEEEecCcee-----------EEEEEEeccCCHHHHHHHHHHhCchh
Confidence 46899998888776554 45556788899999997766432 45677888889999999998887654
No 355
>PF07722 Peptidase_C26: Peptidase C26; InterPro: IPR011697 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. These peptidases have gamma-glutamyl hydrolase activity; that is they catalyse the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to IPR000991 from INTERPRO, but contain extensions in four loops and at the C terminus []. They belong to MEROPS peptidase family C26 (gamma-glutamyl hydrolase family), clan PC. The majority of the sequences are classified as unassigned peptidases. ; GO: 0016787 hydrolase activity, 0006541 glutamine metabolic process; PDB: 1L9X_A 3FIJ_D.
Probab=30.08 E-value=59 Score=26.58 Aligned_cols=32 Identities=13% Similarity=0.019 Sum_probs=23.6
Q ss_pred HHHHHHHhCCeEeccCCCCCHHHHHHHhhhcC
Q 019348 95 CFLGVIAIGAIASTANPVYTVSELSKQVKDSN 126 (342)
Q Consensus 95 ~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~ 126 (342)
..=++..+|+.+++|++..+.+.+.++++..+
T Consensus 29 Yv~~i~~aG~~pv~ip~~~~~~~~~~~l~~id 60 (217)
T PF07722_consen 29 YVKAIEAAGGRPVPIPYDADDEELDELLDRID 60 (217)
T ss_dssp HHHHHHHTT-EEEEE-SS--HHHHHHHHHCSS
T ss_pred HHHHHHHcCCEEEEEccCCCHHHHHHHHhhcC
Confidence 44567889999999999999999999998654
No 356
>cd07102 ALDH_EDX86601 Uncharacterized aldehyde dehydrogenase of Synechococcus sp. PCC 7335 (EDX86601). Uncharacterized aldehyde dehydrogenase of Synechococcus sp. PCC 7335 (locus EDX86601) and other similar sequences, are present in this CD.
Probab=30.07 E-value=2.9e+02 Score=25.52 Aligned_cols=79 Identities=18% Similarity=0.053 Sum_probs=46.8
Q ss_pred CCeEEEEccchhHHHHH-HHHHHHHhhcCCeEEEccC-CC---HHHHHHHHHhcc-----ceEEEecHHHHHHHHcCCCC
Q 019348 234 LDHVVLCVLPMFHVFGL-SVILYDQLQKGNCVVSMGK-FD---IEMALRAIEKYR-----VTVWWVVPPIILALAKNSLV 303 (342)
Q Consensus 234 ~~d~~~~~~p~~~~~g~-~~~~~~~l~~G~~~v~~~~-~~---~~~~~~~i~~~~-----~t~~~~~P~~l~~l~~~~~~ 303 (342)
+-.+++...|+.+...+ +..+..+|.+|.++++-+. .. ...+.+.+++.+ ++++.........|+.++
T Consensus 116 P~GVv~~i~p~N~P~~~~~~~l~~ALaaGN~VVlKps~~~~~~~~~l~~~l~~aGlP~g~~~~v~g~~~~~~~L~~~~-- 193 (452)
T cd07102 116 PLGVVLIIAPWNYPYLTAVNAVIPALLAGNAVILKHSPQTPLCGERFAAAFAEAGLPEGVFQVLHLSHETSAALIADP-- 193 (452)
T ss_pred eccEEEEEcCCchHHHHHHHHHHHHHHcCCEEEEECCCCCcHHHHHHHHHHHhcCCCcCcEEEEeCCchhHHHHhcCC--
Confidence 34577777776665422 2457899999999888643 32 355666666653 333443334556666654
Q ss_pred CccCCCCceEEEeeccc
Q 019348 304 RKFDISSLKLVGSGAAP 320 (342)
Q Consensus 304 ~~~~l~~lr~~~~gG~~ 320 (342)
.++.+.+.|+.
T Consensus 194 ------~v~~V~fTGs~ 204 (452)
T cd07102 194 ------RIDHVSFTGSV 204 (452)
T ss_pred ------CCCEEEEECcH
Confidence 35566666643
No 357
>COG4126 Hydantoin racemase [Amino acid transport and metabolism]
Probab=29.91 E-value=2e+02 Score=23.63 Aligned_cols=88 Identities=13% Similarity=0.099 Sum_probs=53.8
Q ss_pred HHHHHHhhcCCeEEEcc--CCCHHHHHHHHHhccceEEEe--------------cHHHHHHHHcCCCCCccCCCCceEEE
Q 019348 252 VILYDQLQKGNCVVSMG--KFDIEMALRAIEKYRVTVWWV--------------VPPIILALAKNSLVRKFDISSLKLVG 315 (342)
Q Consensus 252 ~~~~~~l~~G~~~v~~~--~~~~~~~~~~i~~~~~t~~~~--------------~P~~l~~l~~~~~~~~~~l~~lr~~~ 315 (342)
..+..++.-|-.+-+.. +....-+-+.++.+.++.-.. .|.-.+.++.+...+..+...-..++
T Consensus 100 Asv~~A~~vgrrfsViTtt~rs~~il~~lv~~~g~s~~~~~vrstdl~vL~l~~~~~~~~~~l~~~~~~a~~edgAeaIi 179 (230)
T COG4126 100 ASVLAALFVGRRFSVITTTERSRPILEELVRSYGLSRHCRSVRSTDLPVLALEGPPEEAEALLVIEAAEALKEDGAEAII 179 (230)
T ss_pred HHHHHHHHhcceEEEEecCcccHHHHHHHHHhcCccccccceeeCCCCcccccCChHHHHHHHHHHHHHHhhhcCCCEEE
Confidence 34677888888877763 234455555666665443322 24444444443333333334566788
Q ss_pred eecccCCHHHHHHHHHhCCCCccccc
Q 019348 316 SGAAPLGKELMEDCQKNIPGATIFQK 341 (342)
Q Consensus 316 ~gG~~l~~~~~~~~~~~~~~~~l~~~ 341 (342)
.|++.++. +.+++++.|| ++++.+
T Consensus 180 LGCAGms~-la~~Lq~~~g-vPVIDg 203 (230)
T COG4126 180 LGCAGMSD-LADQLQKAFG-VPVIDG 203 (230)
T ss_pred EcCccHHH-HHHHHHHHhC-CCcccc
Confidence 99988864 4889999998 888764
No 358
>cd07078 ALDH NAD(P)+ dependent aldehyde dehydrogenase family. The aldehyde dehydrogenase family (ALDH) of NAD(P)+ dependent enzymes, in general, oxidize a wide range of endogenous and exogenous aliphatic and aromatic aldehydes to their corresponding carboxylic acids and play an important role in detoxification. Besides aldehyde detoxification, many ALDH isozymes possess multiple additional catalytic and non-catalytic functions such as participating in metabolic pathways, or as binding proteins, or as osmoregulants, to mention a few. The enzyme has three domains, a NAD(P)+ cofactor-binding domain, a catalytic domain, and a bridging domain; and the active enzyme is generally either homodimeric or homotetrameric. The catalytic mechanism is proposed to involve cofactor binding, resulting in a conformational change and activation of an invariant catalytic cysteine nucleophile. The cysteine and aldehyde substrate form an oxyanion thiohemiacetal intermediate resulting in hydride transfer
Probab=29.90 E-value=2.7e+02 Score=25.41 Aligned_cols=49 Identities=18% Similarity=0.060 Sum_probs=32.1
Q ss_pred CeEEEEccchhHHH-HHHHHHHHHhhcCCeEEEccC-C---CHHHHHHHHHhcc
Q 019348 235 DHVVLCVLPMFHVF-GLSVILYDQLQKGNCVVSMGK-F---DIEMALRAIEKYR 283 (342)
Q Consensus 235 ~d~~~~~~p~~~~~-g~~~~~~~~l~~G~~~v~~~~-~---~~~~~~~~i~~~~ 283 (342)
..++++..|..+.. ..+..+..+|.+|.++++-++ . ....+.+.+++..
T Consensus 97 ~Gvv~~i~p~N~P~~~~~~~~~~AL~aGN~vilkps~~~~~~~~~l~~~l~~ag 150 (432)
T cd07078 97 LGVVGAITPWNFPLLLAAWKLAPALAAGNTVVLKPSELTPLTALLLAELLAEAG 150 (432)
T ss_pred cceEEEECCCccHHHHHHHHHHHHHHcCCEEEEECCCCChHHHHHHHHHHHHcC
Confidence 34666777766553 233567899999998887643 2 3466777777654
No 359
>PF08845 SymE_toxin: Toxin SymE, type I toxin-antitoxin system; InterPro: IPR014944 This entry represents a SOS-induced gene whose product shows homology to the antitoxin MazE (SymE), the coding region contains a cis-encoded antisense RNA. The small antisense RNA and the gene have the all the hallmarks of a toxin-antitoxin module. The synthesis of the SymE is tightly repressed at multiple levels; at the transcriptional level by the LexA repressor, at the level of mRNA stability and translation by the SymR RNA and at the level of protein stability by the Lon protease. SymE co-purifies with ribosomes and overproduction of the protein leads to cell growth inhibition, decreased protein synthesis and increased RNA degradation. These properties are shared with several RNA endonuclease toxins of toxin-antitoxin modules. It seems probable that the SymE protein represents an evolutionary derivative of a toxin containing the AbrB fold, whose representatives are typically antitoxins. The SymE promoted cleavage of RNA cleavage may be important for the recycling of RNAs damaged under SOS-inducing conditions []. ; GO: 0003723 RNA binding, 0016788 hydrolase activity, acting on ester bonds, 0016070 RNA metabolic process, 0005737 cytoplasm
Probab=29.63 E-value=60 Score=20.08 Aligned_cols=22 Identities=18% Similarity=0.116 Sum_probs=18.2
Q ss_pred HHHHHHcCCCCCCEEEEECCCC
Q 019348 68 SHSFRHLGITKKDVVLIFAPNS 89 (342)
Q Consensus 68 a~~L~~~g~~~g~~V~i~~~n~ 89 (342)
..+|.+.|+..|+.|-|-..++
T Consensus 30 G~WL~~aGF~~G~~v~V~v~~g 51 (57)
T PF08845_consen 30 GKWLEEAGFTIGDPVKVRVMPG 51 (57)
T ss_pred hhhhHHhCCCCCCEEEEEEECC
Confidence 5789999999999988876554
No 360
>cd07139 ALDH_AldA-Rv0768 Mycobacterium tuberculosis aldehyde dehydrogenase AldA-like. The Mycobacterium tuberculosis NAD+-dependent, aldehyde dehydrogenase PDB structure, 3B4W, and the Mycobacterium tuberculosis H37Rv aldehyde dehydrogenase AldA (locus Rv0768) sequence, as well as the Rhodococcus rhodochrous ALDH involved in haloalkane catabolism, and other similar sequences, are included in this CD.
Probab=29.59 E-value=3.4e+02 Score=25.22 Aligned_cols=80 Identities=19% Similarity=0.062 Sum_probs=47.4
Q ss_pred CCeEEEEccchhHHHHHHH-HHHHHhhcCCeEEEccC-C---CHHHHHHHHHhcc-----ceEEEecHHHHHHHHcCCCC
Q 019348 234 LDHVVLCVLPMFHVFGLSV-ILYDQLQKGNCVVSMGK-F---DIEMALRAIEKYR-----VTVWWVVPPIILALAKNSLV 303 (342)
Q Consensus 234 ~~d~~~~~~p~~~~~g~~~-~~~~~l~~G~~~v~~~~-~---~~~~~~~~i~~~~-----~t~~~~~P~~l~~l~~~~~~ 303 (342)
+--+++...|+.+...+.. .+..+|.+|.++++-+. . ....+.+++++.+ ++++...+..-..|..++
T Consensus 137 P~Gvv~~I~p~N~P~~~~~~~i~~ALaaGN~VvlKps~~~p~~~~~l~~~~~~aglP~gv~~~v~g~~~~~~~l~~~~-- 214 (471)
T cd07139 137 PVGVVAAIVPWNAPLFLAALKIAPALAAGCTVVLKPSPETPLDAYLLAEAAEEAGLPPGVVNVVPADREVGEYLVRHP-- 214 (471)
T ss_pred eccEEEEEcCCchHHHHHHHHHHHHHhcCCEEEEECCCcCCHHHHHHHHHHHHcCCCCCcEEEEeCCHHHHHHHhcCC--
Confidence 3456677778777666533 37889999999998643 2 3455666666642 333333334445555544
Q ss_pred CccCCCCceEEEeecccC
Q 019348 304 RKFDISSLKLVGSGAAPL 321 (342)
Q Consensus 304 ~~~~l~~lr~~~~gG~~l 321 (342)
.++.+.++|+.-
T Consensus 215 ------~i~~v~ftGs~~ 226 (471)
T cd07139 215 ------GVDKVSFTGSTA 226 (471)
T ss_pred ------CCCEEEEECcHH
Confidence 356667666443
No 361
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=29.53 E-value=1.7e+02 Score=19.36 Aligned_cols=40 Identities=13% Similarity=0.218 Sum_probs=27.7
Q ss_pred HHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCe
Q 019348 66 KVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAI 105 (342)
Q Consensus 66 ~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~ 105 (342)
.+...+...+..+++.|.++|..+.....+...+...|..
T Consensus 43 ~~~~~~~~~~~~~~~~iv~~c~~g~~a~~~~~~l~~~G~~ 82 (100)
T smart00450 43 EFEELLKRLGLDKDKPVVVYCRSGNRSAKAAWLLRELGFK 82 (100)
T ss_pred HHHHHHHHcCCCCCCeEEEEeCCCcHHHHHHHHHHHcCCC
Confidence 3445555667788888888887777776666666666654
No 362
>PRK07786 long-chain-fatty-acid--CoA ligase; Validated
Probab=29.39 E-value=4.8e+02 Score=24.50 Aligned_cols=86 Identities=15% Similarity=0.155 Sum_probs=54.7
Q ss_pred cceeHHHHHHHHHHHHHHHHHcCC-CCCCEEEEECCCCC-hHHHHHHHHHHhCCeEeccC-CCCCHHHHHHHhhhcCceE
Q 019348 53 ESLSFSQFKSIVIKVSHSFRHLGI-TKKDVVLIFAPNSI-HFPICFLGVIAIGAIASTAN-PVYTVSELSKQVKDSNPKL 129 (342)
Q Consensus 53 ~~~Ty~~l~~~~~~la~~L~~~g~-~~g~~V~i~~~n~~-~~~~~~lA~~~~G~~~v~l~-~~~~~~~l~~~l~~~~~~~ 129 (342)
-.+|++.+...+..+.. ..++ ..++++....+... -.+..+++.+..|+..+..+ ....++++...++..++.+
T Consensus 192 v~~s~~~l~~~~~~~~~---~~~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~~t~ 268 (542)
T PRK07786 192 AVLTHANLTGQAMTCLR---TNGADINSDVGFVGVPLFHIAGIGSMLPGLLLGAPTVIYPLGAFDPGQLLDVLEAEKVTG 268 (542)
T ss_pred hhhhHHHHHHHHHHHHH---hcCCCCCCceEEEecchHHHHHHHHHHHHHHccCEEEEccCCCcCHHHHHHHHHHcCCeE
Confidence 35677777655544333 3355 44555555444322 12355677888888776543 2457788999999999999
Q ss_pred EEEcccchhhhh
Q 019348 130 VITVPELWDKVK 141 (342)
Q Consensus 130 vi~~~~~~~~~~ 141 (342)
+...+.....+.
T Consensus 269 ~~~~P~~l~~l~ 280 (542)
T PRK07786 269 IFLVPAQWQAVC 280 (542)
T ss_pred EEehHHHHHHHH
Confidence 998877665543
No 363
>cd07089 ALDH_CddD-AldA-like Rhodococcus ruber 6-oxolauric acid dehydrogenase-like and related proteins. The 6-oxolauric acid dehydrogenase (CddD) from Rhodococcus ruber SC1 which converts 6-oxolauric acid to dodecanedioic acid; and the aldehyde dehydrogenase (locus SSP0762) from Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 and also, the Mycobacterium tuberculosis H37Rv ALDH AldA (locus Rv0768) sequence; and other similar sequences, are included in this CD.
Probab=29.36 E-value=3.2e+02 Score=25.35 Aligned_cols=79 Identities=22% Similarity=0.090 Sum_probs=47.4
Q ss_pred CCeEEEEccchhHHHHH-HHHHHHHhhcCCeEEEccC-C---CHHHHHHHHHhcc-----ceEEEecH-HHHHHHHcCCC
Q 019348 234 LDHVVLCVLPMFHVFGL-SVILYDQLQKGNCVVSMGK-F---DIEMALRAIEKYR-----VTVWWVVP-PIILALAKNSL 302 (342)
Q Consensus 234 ~~d~~~~~~p~~~~~g~-~~~~~~~l~~G~~~v~~~~-~---~~~~~~~~i~~~~-----~t~~~~~P-~~l~~l~~~~~ 302 (342)
+--+++...|+.+.... +..+..+|.+|.++++-+. . ....+.+++.+.+ ++++.... ..-..|..++
T Consensus 123 P~GVV~~I~P~N~P~~~~~~~~~~AL~aGN~vvlKps~~~p~~~~~l~~~~~~aglP~g~~~~v~g~~~~~~~~l~~~~- 201 (459)
T cd07089 123 PVGVVAAITPWNFPFFLNLAKLAPALAAGNTVVLKPAPDTPLSALLLGEIIAETDLPAGVVNVVTGSDNAVGEALTTDP- 201 (459)
T ss_pred eccEEEEEcCCchHHHHHHHHHHHHHHcCCEEEEECCCCChHHHHHHHHHHHHcCCCccceEEEecCcHHHHHHHhcCC-
Confidence 34577777887666443 2457899999999988643 3 2355666666642 33333322 2455565554
Q ss_pred CCccCCCCceEEEeeccc
Q 019348 303 VRKFDISSLKLVGSGAAP 320 (342)
Q Consensus 303 ~~~~~l~~lr~~~~gG~~ 320 (342)
.++.+.++|+.
T Consensus 202 -------~~~~v~ftGs~ 212 (459)
T cd07089 202 -------RVDMVSFTGST 212 (459)
T ss_pred -------CCCEEEEECcH
Confidence 46667666644
No 364
>PRK06382 threonine dehydratase; Provisional
Probab=29.25 E-value=3.2e+02 Score=24.88 Aligned_cols=89 Identities=16% Similarity=0.143 Sum_probs=52.2
Q ss_pred ceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeEeccCCCCCHHHHHHHh
Q 019348 43 KLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQV 122 (342)
Q Consensus 43 ~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l 122 (342)
++.+-..+.+.+=||++=-. ...+ ..+.+.+..+| .+....+-.-..+.++|...|.-+..+=|...+......+
T Consensus 41 ~v~~K~E~~nptGSfK~Rga-~~~i-~~~~~~~~~~g---vv~aSsGN~g~a~A~aa~~~G~~~~ivmp~~~~~~k~~~~ 115 (406)
T PRK06382 41 DIYFKLENFQKTGSFKSRGA-VFKF-SKLSEDELRNG---VITASAGNHAQGVAYAASINGIDAKIVMPEYTIPQKVNAV 115 (406)
T ss_pred EEEEEecCCCCCCCCHHHHH-HHHH-HhcchhccCCe---EEEECCCHHHHHHHHHHHHcCCCEEEEEcCCCHHHHHHHH
Confidence 55665554344444433111 1112 22333333444 3344555566667788889998666666665556667779
Q ss_pred hhcCceEEEEcccc
Q 019348 123 KDSNPKLVITVPEL 136 (342)
Q Consensus 123 ~~~~~~~vi~~~~~ 136 (342)
+..+++++++....
T Consensus 116 ~~~GA~Vv~~~~~~ 129 (406)
T PRK06382 116 EAYGAHVILTGRDY 129 (406)
T ss_pred HHcCCEEEEECCCH
Confidence 99999999988653
No 365
>PRK15399 lysine decarboxylase LdcC; Provisional
Probab=29.20 E-value=2e+02 Score=28.40 Aligned_cols=47 Identities=9% Similarity=0.065 Sum_probs=36.0
Q ss_pred CCCCCEEEEECCCCChHHHHHHHHHHhCCeEeccCCCC---------CH-----HHHHHHhhhc
Q 019348 76 ITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVY---------TV-----SELSKQVKDS 125 (342)
Q Consensus 76 ~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~---------~~-----~~l~~~l~~~ 125 (342)
+++||.|+ +..|+...+.- |+..+|+.+|-+.|.. +. +.+++.++..
T Consensus 232 ~~~Gd~VL-vdRN~HKSv~~--aLilsga~PVYl~P~~n~~Gi~g~I~~~~~~~e~I~~~i~~~ 292 (713)
T PRK15399 232 APAGSTLL-IDRNCHKSLAH--LLMMSDVVPIWLKPTRNALGILGGIPRREFTRDSIEEKVAAT 292 (713)
T ss_pred cCCCCEEE-eecccHHHHHH--HHHHcCCeeEEecccccccCCcCCCChhhccHHHHHHHHHhC
Confidence 47899766 56888888665 9999999999998764 23 6677777654
No 366
>TIGR01279 DPOR_bchN light-independent protochlorophyllide reductase, N subunit. This enzyme describes the N subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme involved in bacteriochlorophyll biosynthesis. This subunit shows homology to the nitrogenase molybdenum-iron protein NifN.
Probab=28.65 E-value=4.3e+02 Score=24.10 Aligned_cols=105 Identities=11% Similarity=0.074 Sum_probs=0.0
Q ss_pred HHHHHhhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeEec
Q 019348 29 MVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIAST 108 (342)
Q Consensus 29 l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~ 108 (342)
+.+.+.........+.+++..+. ..+..++++|.+.|..+ ..+.....+.++..-.+..+..+ +.
T Consensus 261 ~~~~l~~~~~~l~Gkrv~i~gd~----------~~~~~l~~~L~elGm~~--v~~~t~~~~~~~~~~~~~~l~~~---~~ 325 (407)
T TIGR01279 261 AWRALEPHTQLLRGKKIFFFGDN----------LLELPLARFLKRCGMEV--VECGTPYIHRRFHAAELALLEGG---VR 325 (407)
T ss_pred HHHHHHHHHHhcCCCEEEEECCc----------hHHHHHHHHHHHCCCEE--EEecCCCCChHHHHHHHhhcCCC---Ce
Q ss_pred cCCCCCHHHHHHHhhhcCceEEEEcccchhhhhccCCCeE
Q 019348 109 ANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAV 148 (342)
Q Consensus 109 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~ 148 (342)
+-......++.+.++..+|+++|......--+...+.+..
T Consensus 326 v~~~~d~~~l~~~i~~~~pDllig~~~~~~pl~r~GfP~~ 365 (407)
T TIGR01279 326 IVEQPDFHRQLQRIRATRPDLVVTGLGTANPLEAQGFTTK 365 (407)
T ss_pred EEeCCCHHHHHHHHHhcCCCEEecCccCCCcHhhCCccee
No 367
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=28.58 E-value=3.1e+02 Score=21.97 Aligned_cols=83 Identities=11% Similarity=0.029 Sum_probs=52.7
Q ss_pred CcceeHHHHHHHHHHHHHHH---HH-cC----CCCCCEEEEECCCCC--hH--HHHHHHHHHhCCeEeccCCCCCHHHHH
Q 019348 52 DESLSFSQFKSIVIKVSHSF---RH-LG----ITKKDVVLIFAPNSI--HF--PICFLGVIAIGAIASTANPVYTVSELS 119 (342)
Q Consensus 52 ~~~~Ty~~l~~~~~~la~~L---~~-~g----~~~g~~V~i~~~n~~--~~--~~~~lA~~~~G~~~v~l~~~~~~~~l~ 119 (342)
...++-.|.+-.++.+-..+ .. .. -+...+|.+.+..+- +. ..+-...-..|.-++.+.++.|.+++.
T Consensus 49 ~gei~va~~~~a~~~~~~~l~~l~~~~~~~~~~~~~~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~vp~e~~v 128 (197)
T TIGR02370 49 DGELFLPHVMMSADAMLAGIKVLTPEMEKAVETEVLGKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDVPIDTVV 128 (197)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCCCHHHHH
Confidence 35677666655444443332 11 11 122346666665542 22 233334455789999999999999999
Q ss_pred HHhhhcCceEEEEcc
Q 019348 120 KQVKDSNPKLVITVP 134 (342)
Q Consensus 120 ~~l~~~~~~~vi~~~ 134 (342)
..+++.+|++|..+-
T Consensus 129 ~~~~~~~pd~v~lS~ 143 (197)
T TIGR02370 129 EKVKKEKPLMLTGSA 143 (197)
T ss_pred HHHHHcCCCEEEEcc
Confidence 999999999998763
No 368
>cd07138 ALDH_CddD_SSP0762 Rhodococcus ruber 6-oxolauric acid dehydrogenase-like. The 6-oxolauric acid dehydrogenase (CddD) from Rhodococcus ruber SC1 which converts 6-oxolauric acid to dodecanedioic acid, and the aldehyde dehydrogenase (locus SSP0762) from Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 and other similar sequences, are included in this CD.
Probab=28.52 E-value=3.3e+02 Score=25.25 Aligned_cols=79 Identities=11% Similarity=-0.002 Sum_probs=48.1
Q ss_pred CCeEEEEccchhHHHHH-HHHHHHHhhcCCeEEEccC-C---CHHHHHHHHHhcc-----ceEEEecH-HHHHHHHcCCC
Q 019348 234 LDHVVLCVLPMFHVFGL-SVILYDQLQKGNCVVSMGK-F---DIEMALRAIEKYR-----VTVWWVVP-PIILALAKNSL 302 (342)
Q Consensus 234 ~~d~~~~~~p~~~~~g~-~~~~~~~l~~G~~~v~~~~-~---~~~~~~~~i~~~~-----~t~~~~~P-~~l~~l~~~~~ 302 (342)
+--++....|+.+...+ +..+..+|.+|.++++=+. . ....+.+++++.+ ++++.... ..-..|.+++
T Consensus 130 P~GVv~~I~p~N~P~~~~~~~~~~ALaaGN~Vv~Kps~~~p~~~~~l~~~~~~aGlP~g~v~~v~g~~~~~~~~l~~~~- 208 (466)
T cd07138 130 PIGVCGLITPWNWPLNQIVLKVAPALAAGCTVVLKPSEVAPLSAIILAEILDEAGLPAGVFNLVNGDGPVVGEALSAHP- 208 (466)
T ss_pred ecceEEEECCCccHHHHHHHHHHHHHhcCCEEEEECCCcCcHHHHHHHHHHHHcCCCCCcEEEEeCCchhHHHHHhcCC-
Confidence 34577778887666443 2358899999999998643 2 3456666666653 33444322 3456666554
Q ss_pred CCccCCCCceEEEeeccc
Q 019348 303 VRKFDISSLKLVGSGAAP 320 (342)
Q Consensus 303 ~~~~~l~~lr~~~~gG~~ 320 (342)
.++.+.++|++
T Consensus 209 -------~v~~v~fTGs~ 219 (466)
T cd07138 209 -------DVDMVSFTGST 219 (466)
T ss_pred -------CCCEEEEECcH
Confidence 46667666643
No 369
>PF00171 Aldedh: Aldehyde dehydrogenase family; InterPro: IPR015590 Aldehyde dehydrogenases (1.2.1.3 from EC and 1.2.1.5 from EC) are enzymes that oxidize a wide variety of aliphatic and aromatic aldehydes using NADP as a cofactor. In mammals at least four different forms of the enzyme are known []: class-1 (or Ald C) a tetrameric cytosolic enzyme, class-2 (or Ald M) a tetrameric mitochondrial enzyme, class- 3 (or Ald D) a dimeric cytosolic enzyme, and class IV a microsomal enzyme. Aldehyde dehydrogenases have also been sequenced from fungal and bacterial species. A number of enzymes are known to be evolutionary related to aldehyde dehydrogenases. A glutamic acid and a cysteine residue have been implicated in the catalytic activity of mammalian aldehyde dehydrogenase. These residues are conserved in all the enzymes of this entry. Some of the proteins in this entry are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Alt a 10 and Cla h 3.; GO: 0016491 oxidoreductase activity, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 3R31_A 3HAZ_A 1UXQ_A 1UXP_A 1UXR_A 1UXU_A 1UXN_A 1KY8_A 1UXT_A 1UXV_A ....
Probab=28.49 E-value=2.6e+02 Score=25.87 Aligned_cols=77 Identities=22% Similarity=0.127 Sum_probs=45.9
Q ss_pred eEEEEccchhHHHHH-HHHHHHHhhcCCeEEEc-cCCC---HHHHHHHHHhc--c---ceEEEe-cHHHHHHHHcCCCCC
Q 019348 236 HVVLCVLPMFHVFGL-SVILYDQLQKGNCVVSM-GKFD---IEMALRAIEKY--R---VTVWWV-VPPIILALAKNSLVR 304 (342)
Q Consensus 236 d~~~~~~p~~~~~g~-~~~~~~~l~~G~~~v~~-~~~~---~~~~~~~i~~~--~---~t~~~~-~P~~l~~l~~~~~~~ 304 (342)
-+++...|+.+.... +..+..+|..|.++++- ++.. ...+.+++++- . ++++.. .......|..++
T Consensus 128 GVv~~i~p~n~P~~~~~~~~~~ALaaGN~VVlkps~~~~~~~~~l~~~~~~AglP~gvv~vv~g~~~~~~~~l~~~~--- 204 (462)
T PF00171_consen 128 GVVLIITPWNFPLYLAVWKIAPALAAGNTVVLKPSEQAPLTALLLAELLEEAGLPPGVVNVVPGDGSEVGEALVSHP--- 204 (462)
T ss_dssp SEEEEEE-SSSCTHHHHHHHHHHHHTT-EEEEEEBTTSHHHHHHHHHHHHHHTSTTTSEEEECSSTHHHHHHHHHTT---
T ss_pred cceeecccccccccccccchhhhhcccccceeeeccccccccccchhhccccccccccccccccccccccceeeecc---
Confidence 356666666554443 24478899999999994 4433 35666666662 2 444545 345677777665
Q ss_pred ccCCCCceEEEeeccc
Q 019348 305 KFDISSLKLVGSGAAP 320 (342)
Q Consensus 305 ~~~l~~lr~~~~gG~~ 320 (342)
.++.+.+.|+.
T Consensus 205 -----~v~~v~ftGs~ 215 (462)
T PF00171_consen 205 -----DVDLVSFTGST 215 (462)
T ss_dssp -----TEEEEEEESEH
T ss_pred -----ccceeeecchh
Confidence 46677766643
No 370
>TIGR00067 glut_race glutamate racemase. The most closely related proteins differing in function are aspartate racemases.
Probab=28.46 E-value=2.4e+02 Score=23.68 Aligned_cols=54 Identities=9% Similarity=0.082 Sum_probs=37.9
Q ss_pred hhhcccCCCceEEEeCCCC----cceeHHHHHHHHHHHHHHHH-HcCCCCCCEEEEECCCCCh
Q 019348 34 FRNSASYSSKLALIDADSD----ESLSFSQFKSIVIKVSHSFR-HLGITKKDVVLIFAPNSIH 91 (342)
Q Consensus 34 ~~~~~~~p~~~a~~~~~~~----~~~Ty~~l~~~~~~la~~L~-~~g~~~g~~V~i~~~n~~~ 91 (342)
.+-.+..|+...+...|+. ..-|-.++.+++.+.+..|. +.|+ |.+++-| |+..
T Consensus 15 ~~l~~~~p~~~~iy~~D~~~~PYG~ks~~~i~~~~~~~~~~L~~~~g~---d~ivIaC-NTA~ 73 (251)
T TIGR00067 15 KEIRKQLPKEHYIYVGDTKRFPYGEKSPEFILEYVLELLTFLKERHNI---KLLVVAC-NTAS 73 (251)
T ss_pred HHHHHHCCCCCEEEEecCCCCCCCCCCHHHHHHHHHHHHHHHHHhCCC---CEEEEeC-chHH
Confidence 3334456777777776644 67788999999999999998 8776 3454444 4544
No 371
>PLN02479 acetate-CoA ligase
Probab=28.43 E-value=5e+02 Score=24.65 Aligned_cols=82 Identities=10% Similarity=0.034 Sum_probs=58.6
Q ss_pred hHhHHHHHHHhhhhhhhh-ccccCCCeEEEEccchhHHHHHHHHHHHHhhcCCeEEEcc-CCCHHHHHHHHHhccceEEE
Q 019348 211 ILTHKNFIAASLMISAHQ-ELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMG-KFDIEMALRAIEKYRVTVWW 288 (342)
Q Consensus 211 ~~t~~~l~~~~~~~~~~~-~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~ 288 (342)
.+|...+...+..+.... ..+..++|++....+-.- .++..+++++..|+..+..+ .+....+...+++.++..++
T Consensus 45 ~~ty~eL~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~--~~~~~~la~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~ii 122 (567)
T PLN02479 45 RYTWAQTYQRCRRLASALAKRSIGPGSTVAVIAPNIP--AMYEAHFGVPMAGAVVNCVNIRLNAPTIAFLLEHSKSEVVM 122 (567)
T ss_pred eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcH--HHHHHHHHHHhCCcEEEEeccccCHHHHHHHHhhcCceEEE
Confidence 467777777655543222 224568888887777544 33356789999998887764 46789999999999999999
Q ss_pred ecHHHH
Q 019348 289 VVPPII 294 (342)
Q Consensus 289 ~~P~~l 294 (342)
..+..+
T Consensus 123 ~~~~~~ 128 (567)
T PLN02479 123 VDQEFF 128 (567)
T ss_pred Echhhh
Confidence 877654
No 372
>cd07119 ALDH_BADH-GbsA Bacillus subtilis NAD+-dependent betaine aldehyde dehydrogenase-like. Included in this CD is the NAD+-dependent, betaine aldehyde dehydrogenase (BADH, GbsA, EC=1.2.1.8) of Bacillus subtilis involved in the synthesis of the osmoprotectant glycine betaine from choline or glycine betaine aldehyde.
Probab=28.40 E-value=2.7e+02 Score=26.01 Aligned_cols=79 Identities=20% Similarity=0.080 Sum_probs=46.8
Q ss_pred CCeEEEEccchhHHHHHH-HHHHHHhhcCCeEEEccC-C---CHHHHHHHHHhc--cceEEEecH----HHHHHHHcCCC
Q 019348 234 LDHVVLCVLPMFHVFGLS-VILYDQLQKGNCVVSMGK-F---DIEMALRAIEKY--RVTVWWVVP----PIILALAKNSL 302 (342)
Q Consensus 234 ~~d~~~~~~p~~~~~g~~-~~~~~~l~~G~~~v~~~~-~---~~~~~~~~i~~~--~~t~~~~~P----~~l~~l~~~~~ 302 (342)
+--+++...|+.+..... ..+..+|.+|.++++-+. . ....+.+++.+. ....+.+++ ..-..|.+++
T Consensus 134 P~GvV~~I~p~N~P~~~~~~~~~~ALaaGN~VilKps~~~p~~~~~l~~~~~~aGlP~gv~~~v~g~~~~~~~~l~~~~- 212 (482)
T cd07119 134 PVGVCGLITPWNYPLLQAAWKLAPALAAGNTVVIKPSEVTPLTTIALFELIEEAGLPAGVVNLVTGSGATVGAELAESP- 212 (482)
T ss_pred eeeeEEEEcCCchHHHHHHHHHHHHHhcCCEEEEECCccccHHHHHHHHHHHHcCCCcCcEEEEecCcHHHHHHHhcCC-
Confidence 335777777876655442 237789999999888653 2 345666677664 223333332 2455666554
Q ss_pred CCccCCCCceEEEeeccc
Q 019348 303 VRKFDISSLKLVGSGAAP 320 (342)
Q Consensus 303 ~~~~~l~~lr~~~~gG~~ 320 (342)
.++.+.+.|++
T Consensus 213 -------~v~~V~fTGs~ 223 (482)
T cd07119 213 -------DVDLVSFTGGT 223 (482)
T ss_pred -------CCCEEEEECcH
Confidence 46667766644
No 373
>PRK07503 methionine gamma-lyase; Provisional
Probab=28.26 E-value=3.3e+02 Score=24.69 Aligned_cols=55 Identities=15% Similarity=0.194 Sum_probs=28.1
Q ss_pred CCCCCEEEEECCCCC-hHHHHHHHHHHhCCeEeccCCCCCHHHHHHHhhhcCceEEEE
Q 019348 76 ITKKDVVLIFAPNSI-HFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVIT 132 (342)
Q Consensus 76 ~~~g~~V~i~~~n~~-~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~ 132 (342)
+++||.|++..+.-. .+.....++...|+.+..++.. ..+++...+.. ++++|++
T Consensus 101 l~~Gd~Viv~~~~y~~t~~~~~~~~~~~G~~v~~vd~~-d~~~l~~~i~~-~tklV~l 156 (403)
T PRK07503 101 LRPGDEVIVDQTLYGCTFAFLHHGLGEFGVTVRHVDLT-DPAALKAAISD-KTRMVYF 156 (403)
T ss_pred cCCCCEEEEccCccchHHHHHHHHHhhCCEEEEEeCCC-CHHHHHHhcCc-cCcEEEE
Confidence 567777666432111 1111222344567776666553 34556655543 5566665
No 374
>PLN02190 cellulose synthase-like protein
Probab=28.10 E-value=98 Score=30.50 Aligned_cols=68 Identities=15% Similarity=0.204 Sum_probs=47.7
Q ss_pred ceeecCCCCCCCCCCCCCCHHHHHhhhcccCC-CceEE-EeCCCCcceeHHHHHHHHHHHHHHH---HHcCCCCC
Q 019348 10 GIYRSLRPPLVLPSDPSFSMVHFLFRNSASYS-SKLAL-IDADSDESLSFSQFKSIVIKVSHSF---RHLGITKK 79 (342)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~p-~~~a~-~~~~~~~~~Ty~~l~~~~~~la~~L---~~~g~~~g 79 (342)
+++.....|...|.- .+....+.-.+-++| +|.+. +.+|.++.+||..|.+.++--..++ +++++++.
T Consensus 96 DvFV~TaDP~kEPpl--~v~nTvLSilA~dYP~eklscYvSDDG~s~LT~~al~EAa~FA~~WvPFCrK~~IepR 168 (756)
T PLN02190 96 DMFVPTADPVREPPI--IVVNTVLSLLAVNYPANKLACYVSDDGCSPLTYFSLKEASKFAKIWVPFCKKYNVRVR 168 (756)
T ss_pred eEEEecCCCCcCCHH--HHHHHHHHHHhccCCccccceEEecCCCcHhHHHHHHHHHHHHhhhcccccccCCCcC
Confidence 455666666666665 677777888888888 55443 3445579999999998877666666 77787754
No 375
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=28.03 E-value=3.8e+02 Score=23.76 Aligned_cols=112 Identities=11% Similarity=0.031 Sum_probs=66.8
Q ss_pred CCHHHHHhhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeE
Q 019348 27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA 106 (342)
Q Consensus 27 ~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~ 106 (342)
..++..+.+-..- +.-......+ . .=.-.++......++..|.+. +-|.|.+ ..+..+.+++.+|+...+..+
T Consensus 22 ~~~g~~~~~~f~i-~~~~~~l~~~-~-~~~~~~~~~~~~~~~~~~~~~---~Pd~Vlv-~GD~~~~la~alaA~~~~ipv 94 (346)
T PF02350_consen 22 PEMGDTFFEGFGI-PKPDYLLDSD-S-QSMAKSTGLAIIELADVLERE---KPDAVLV-LGDRNEALAAALAAFYLNIPV 94 (346)
T ss_dssp CHHHHHHHHHTT---SEEEE--ST-T-S-HHHHHHHHHHHHHHHHHHH---T-SEEEE-ETTSHHHHHHHHHHHHTT-EE
T ss_pred HHHHHHHHhhCCC-CCCCcccccc-c-chHHHHHHHHHHHHHHHHHhc---CCCEEEE-EcCCchHHHHHHHHHHhCCCE
Confidence 3455556653333 2222233332 2 223367777788888888775 3455655 466789999999999999998
Q ss_pred eccCCC---------CCHHHHHHHhhhcCceEEEEcccchhhhhccCC
Q 019348 107 STANPV---------YTVSELSKQVKDSNPKLVITVPELWDKVKDLNL 145 (342)
Q Consensus 107 v~l~~~---------~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~ 145 (342)
+=+.-. .+++..++.+.+..--.+...+....++...+.
T Consensus 95 ~HieaGlRs~d~~~g~~de~~R~~i~~la~lhf~~t~~~~~~L~~~G~ 142 (346)
T PF02350_consen 95 AHIEAGLRSGDRTEGMPDEINRHAIDKLAHLHFAPTEEARERLLQEGE 142 (346)
T ss_dssp EEES-----S-TTSSTTHHHHHHHHHHH-SEEEESSHHHHHHHHHTT-
T ss_pred EEecCCCCccccCCCCchhhhhhhhhhhhhhhccCCHHHHHHHHhcCC
Confidence 887655 677778888877765555555555666666553
No 376
>PRK10717 cysteine synthase A; Provisional
Probab=27.91 E-value=4.2e+02 Score=23.24 Aligned_cols=90 Identities=10% Similarity=-0.011 Sum_probs=55.5
Q ss_pred ceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcC-CCCCCEEEEECCCCChHHHHHHHHHHhCCeEeccCCCCCHHHHHHH
Q 019348 43 KLALIDADSDESLSFSQFKSIVIKVSHSFRHLG-ITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQ 121 (342)
Q Consensus 43 ~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g-~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~ 121 (342)
++.+-....+.+=|++. +-+..+...+.+.| +++|+.|. ....+-.-..+-++|...|.-+..+-|...++.....
T Consensus 29 ~i~~K~E~~nptGS~K~--Rga~~~v~~a~~~g~~~~g~~vv-~aSsGN~g~alA~~a~~~G~~~~vv~p~~~~~~k~~~ 105 (330)
T PRK10717 29 EILGKAEFLNPGGSVKD--RAALNIIWDAEKRGLLKPGGTIV-EGTAGNTGIGLALVAAARGYKTVIVMPETQSQEKKDL 105 (330)
T ss_pred eEEEEeeccCCCCCchH--HHHHHHHHHHHHcCCCCCCCEEE-EeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHH
Confidence 45555543334444433 11222222333445 46676654 4566667777778888899866666565556677889
Q ss_pred hhhcCceEEEEccc
Q 019348 122 VKDSNPKLVITVPE 135 (342)
Q Consensus 122 l~~~~~~~vi~~~~ 135 (342)
++..++++++++..
T Consensus 106 ~~~~GA~V~~~~~~ 119 (330)
T PRK10717 106 LRALGAELVLVPAA 119 (330)
T ss_pred HHHcCCEEEEeCCc
Confidence 99999999999853
No 377
>cd02185 AroH Chorismate mutase (AroH) is one of at least five chorismate-utilizing enzymes present in microorganisms that catalyze the rearrangement of chorismate to prephenic acid, the first committed step in the biosynthesis of aromatic amino acids. In prokaryotes, chorismate mutase may be fused to prephenate dehydratase, prephenate dehydrogenase, or 3-deoxy-D-arabino-heptulosonat-7-phosphate (DAHP) as part of a bifunctional enzyme. The AroH domain forms a homotrimer with three-fold symmetry.
Probab=27.88 E-value=73 Score=23.06 Aligned_cols=54 Identities=7% Similarity=0.115 Sum_probs=38.2
Q ss_pred eHHHHHHHHHHHHHHH-HHcCCCCCCEEEEECCCCChHHHHH--HHHHHhCCe-Eecc
Q 019348 56 SFSQFKSIVIKVSHSF-RHLGITKKDVVLIFAPNSIHFPICF--LGVIAIGAI-ASTA 109 (342)
Q Consensus 56 Ty~~l~~~~~~la~~L-~~~g~~~g~~V~i~~~n~~~~~~~~--lA~~~~G~~-~v~l 109 (342)
|-.++.+.+..+-..+ +++++.+.|.|-+++.-..++-.+| .|+-..|.. .||+
T Consensus 14 t~e~I~~at~eLl~~i~~~N~l~~edivSv~FT~T~DL~a~FPA~aaR~~~~~~~Vpl 71 (117)
T cd02185 14 TAEEILEATRELLEEIIERNNIKPEDIISVIFTVTPDLDAAFPAKAARELGGWKYVPL 71 (117)
T ss_pred CHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEeCCcccccChHHHHHhcCCCCCcce
Confidence 5678888888877666 6779999999988887776655544 555555433 5544
No 378
>cd07090 ALDH_F9_TMBADH NAD+-dependent 4-trimethylaminobutyraldehyde dehydrogenase, ALDH family 9A1. NAD+-dependent, 4-trimethylaminobutyraldehyde dehydrogenase (TMABADH, EC=1.2.1.47), also known as aldehyde dehydrogenase family 9 member A1 (ALDH9A1) in humans, is a cytosolic tetramer which catalyzes the oxidation of gamma-aminobutyraldehyde involved in 4-aminobutyric acid (GABA) biosynthesis and also oxidizes betaine aldehyde (gamma-trimethylaminobutyraldehyde) which is involved in carnitine biosynthesis.
Probab=27.77 E-value=3.2e+02 Score=25.28 Aligned_cols=90 Identities=14% Similarity=0.009 Sum_probs=50.5
Q ss_pred CCeEEEEccchhHHHHHH-HHHHHHhhcCCeEEEccC-C---CHHHHHHHHHhcc-----ceEEEecHHHHHHHHcCCCC
Q 019348 234 LDHVVLCVLPMFHVFGLS-VILYDQLQKGNCVVSMGK-F---DIEMALRAIEKYR-----VTVWWVVPPIILALAKNSLV 303 (342)
Q Consensus 234 ~~d~~~~~~p~~~~~g~~-~~~~~~l~~G~~~v~~~~-~---~~~~~~~~i~~~~-----~t~~~~~P~~l~~l~~~~~~ 303 (342)
+--++++..|+.+..... ..+..+|.+|.++++-+. . ....+.+++.+.+ ++++......-..|..++
T Consensus 116 P~GVV~~I~p~N~P~~~~~~~~~~ALaaGN~Vv~Kps~~~~~~~~~l~~~~~~aGlP~g~~~~v~g~~~~~~~l~~~~-- 193 (457)
T cd07090 116 PLGVCAGIGAWNYPIQIASWKSAPALACGNAMVYKPSPFTPLTALLLAEILTEAGLPDGVFNVVQGGGETGQLLCEHP-- 193 (457)
T ss_pred ecceEEEECCCccHHHHHHHHHHHHHhcCCeeeecCCCcCcHHHHHHHHHHHHcCCCcccEEEEeCChhhHHHHhcCC--
Confidence 345677777877765442 346789999999888643 2 3456666666652 233333334445555543
Q ss_pred CccCCCCceEEEeeccc-CCHHHHHHHHH
Q 019348 304 RKFDISSLKLVGSGAAP-LGKELMEDCQK 331 (342)
Q Consensus 304 ~~~~l~~lr~~~~gG~~-l~~~~~~~~~~ 331 (342)
.++.+.+.|+. .-..+.+...+
T Consensus 194 ------~v~~v~fTGs~~~g~~i~~~aa~ 216 (457)
T cd07090 194 ------DVAKVSFTGSVPTGKKVMSAAAK 216 (457)
T ss_pred ------CCCEEEEECcHHHHHHHHHHHhc
Confidence 35666655533 22344444443
No 379
>PRK09177 xanthine-guanine phosphoribosyltransferase; Validated
Probab=27.68 E-value=2e+02 Score=22.12 Aligned_cols=44 Identities=14% Similarity=0.101 Sum_probs=28.5
Q ss_pred cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHH
Q 019348 53 ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGV 99 (342)
Q Consensus 53 ~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~ 99 (342)
.-+||.|+.+.++++|..+.+.| + -+.| +...++--.+...++-
T Consensus 8 ~~is~~~i~~~i~~la~~I~~~~-~-~d~v-vgv~~GG~~fa~~L~~ 51 (156)
T PRK09177 8 FPVSWDQLHRDARALAWRLLPAG-Q-WKGI-IAVTRGGLVPAAILAR 51 (156)
T ss_pred EEcCHHHHHHHHHHHHHHHHhhC-C-CCEE-EEEecCCeehHHHHHH
Confidence 35899999999999999997754 2 3444 3334443434444433
No 380
>cd07097 ALDH_KGSADH-YcbD Bacillus subtilis NADP+-dependent alpha-ketoglutaric semialdehyde dehydrogenase ycbD-like. Kinetic studies of the Bacillus subtilis ALDH-like ycbD protein, which is involved in d-glucarate/d-galactarate utilization, reveal that it is a NADP+-dependent, alpha-ketoglutaric semialdehyde dehydrogenase (KGSADH). KGSADHs (EC 1.2.1.26) catalyze the NAD(P)+-dependent conversion of KGSA to alpha-ketoglutarate. Interestingly, the NADP+-dependent, tetrameric, 2,5-dioxopentanoate dehydrogenase (EC=1.2.1.26), an enzyme involved in the catabolic pathway for D-arabinose in Sulfolobus solfataricus, also clusters in this group. This CD shows a distant phylogenetic relationship to the Azospirillum brasilense KGSADH-II (-III) group.
Probab=27.68 E-value=2.9e+02 Score=25.75 Aligned_cols=79 Identities=18% Similarity=0.120 Sum_probs=47.4
Q ss_pred CeEEEEccchhHHHHHHH-HHHHHhhcCCeEEEccC-C---CHHHHHHHHHhc--cceEEEecH----HHHHHHHcCCCC
Q 019348 235 DHVVLCVLPMFHVFGLSV-ILYDQLQKGNCVVSMGK-F---DIEMALRAIEKY--RVTVWWVVP----PIILALAKNSLV 303 (342)
Q Consensus 235 ~d~~~~~~p~~~~~g~~~-~~~~~l~~G~~~v~~~~-~---~~~~~~~~i~~~--~~t~~~~~P----~~l~~l~~~~~~ 303 (342)
--+++...|+.+...+.. .+..+|.+|.++++-+. . ....+.+++.+. ....+..++ .+-..|..++
T Consensus 136 ~GVv~~I~P~N~Pl~~~~~~i~~ALaaGN~VIlKps~~~p~~~~~l~~~~~~aGlP~gvv~vv~g~~~~~~~~l~~~~-- 213 (473)
T cd07097 136 LGVVGLITPWNFPIAIPAWKIAPALAYGNTVVFKPAELTPASAWALVEILEEAGLPAGVFNLVMGSGSEVGQALVEHP-- 213 (473)
T ss_pred eeeEEEEcccChHHHHHHHHHHHHHHcCCEEEEeCCCCCcHHHHHHHHHHHHcCCCCcceEEeccCchHHHHHHhcCC--
Confidence 457777888877665532 47789999999888643 3 345566666664 223333332 2455566554
Q ss_pred CccCCCCceEEEeecccC
Q 019348 304 RKFDISSLKLVGSGAAPL 321 (342)
Q Consensus 304 ~~~~l~~lr~~~~gG~~l 321 (342)
.++.+.++|+.-
T Consensus 214 ------~v~~v~fTGs~~ 225 (473)
T cd07097 214 ------DVDAVSFTGSTA 225 (473)
T ss_pred ------CCCEEEEECcHH
Confidence 466666666443
No 381
>TIGR02299 HpaE 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase. This model represents the dehydrogenase responsible for the conversion of 5-carboxymethyl-2-hydroxymuconate semialdehyde to 5-carboxymethyl-2-hydroxymuconate (a tricarboxylic acid). This is the step in the degradation of 4-hydroxyphenylacetic acid via homoprotocatechuate following the oxidative opening of the aromatic ring.
Probab=27.42 E-value=3.4e+02 Score=25.38 Aligned_cols=79 Identities=18% Similarity=0.019 Sum_probs=46.8
Q ss_pred CCeEEEEccchhHHHHHHH-HHHHHhhcCCeEEEccC-C---CHHHHHHHHHhcc-----ceEEEe-cHHHHHHHHcCCC
Q 019348 234 LDHVVLCVLPMFHVFGLSV-ILYDQLQKGNCVVSMGK-F---DIEMALRAIEKYR-----VTVWWV-VPPIILALAKNSL 302 (342)
Q Consensus 234 ~~d~~~~~~p~~~~~g~~~-~~~~~l~~G~~~v~~~~-~---~~~~~~~~i~~~~-----~t~~~~-~P~~l~~l~~~~~ 302 (342)
+--+++...|+.+...+.. .+..+|.+|.++++=+. . ....+.+++.+.+ ++++.. .+...+.|..++
T Consensus 135 P~Gvv~~I~p~N~P~~~~~~~~~~ALaaGN~VIlKps~~~p~~~~~l~~~~~~aGlP~gvv~~v~g~~~~~~~~l~~~~- 213 (488)
T TIGR02299 135 PVGPVGLITPWNAPFMLSTWKIAPALAFGNTVVLKPAEWSPLTAARLAEIAKEAGLPDGVFNLVHGFGEEAGKALVAHP- 213 (488)
T ss_pred ecceEEEECCCccHHHHHHHHHHHHHHcCCEEEEECchhchHHHHHHHHHHHHcCcChhheeEEeCCchHHHHHHhcCC-
Confidence 3345666677776655422 46789999999988643 2 2345666666653 334433 223456666554
Q ss_pred CCccCCCCceEEEeeccc
Q 019348 303 VRKFDISSLKLVGSGAAP 320 (342)
Q Consensus 303 ~~~~~l~~lr~~~~gG~~ 320 (342)
.++.+.++|+.
T Consensus 214 -------~v~~V~fTGS~ 224 (488)
T TIGR02299 214 -------DVKAVSFTGET 224 (488)
T ss_pred -------CcCEEEEECcH
Confidence 45667766644
No 382
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=27.32 E-value=3.8e+02 Score=25.39 Aligned_cols=33 Identities=12% Similarity=0.115 Sum_probs=23.5
Q ss_pred CCCEEEEECCCCChHHHHHHHHHHhCCeEeccC
Q 019348 78 KKDVVLIFAPNSIHFPICFLGVIAIGAIASTAN 110 (342)
Q Consensus 78 ~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~ 110 (342)
.|.+|+|+.+...-+-++-+..-.+|..++...
T Consensus 304 ~Gkrv~I~gd~~~a~~l~~~L~~ELGm~vv~~g 336 (513)
T CHL00076 304 TGKKAVVFGDATHAASMTKILAREMGIRVSCAG 336 (513)
T ss_pred CCCEEEEEcCchHHHHHHHHHHHhCCCEEEEec
Confidence 577899988766666556566678898877543
No 383
>PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated
Probab=27.32 E-value=5.2e+02 Score=24.19 Aligned_cols=90 Identities=18% Similarity=0.122 Sum_probs=58.6
Q ss_pred CCCceEEEeCCCC-------cceeHHHHHHHHHHHHHHHHHcCCC-CCCEEEEECCCCChH-HHHHHHHHHhCCeEeccC
Q 019348 40 YSSKLALIDADSD-------ESLSFSQFKSIVIKVSHSFRHLGIT-KKDVVLIFAPNSIHF-PICFLGVIAIGAIASTAN 110 (342)
Q Consensus 40 ~p~~~a~~~~~~~-------~~~Ty~~l~~~~~~la~~L~~~g~~-~g~~V~i~~~n~~~~-~~~~lA~~~~G~~~v~l~ 110 (342)
.++.++++...+| -.+|++.+...+..+... .++. .+|++....|-...+ +..+++.+..|+..+..+
T Consensus 150 ~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~---~~~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~~~~~~~ 226 (525)
T PRK05851 150 DSGGPAVLQGTAGSTGTPRTAILSPGAVLSNLRGLNAR---VGLDAATDVGCSWLPLYHDMGLAFLLTAALAGAPLWLAP 226 (525)
T ss_pred CCCCeEEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHH---hCCCCCCCeEEEcCCCccCccHHHHHHHHHcCCeEEEcC
Confidence 3566776643322 468888887776665544 3666 788888877765432 234667788888877654
Q ss_pred C-CC--CHHHHHHHhhhcCceEEEE
Q 019348 111 P-VY--TVSELSKQVKDSNPKLVIT 132 (342)
Q Consensus 111 ~-~~--~~~~l~~~l~~~~~~~vi~ 132 (342)
+ .. .+..+...+++.++.++.+
T Consensus 227 ~~~~~~~~~~~~~~i~~~~~t~~~~ 251 (525)
T PRK05851 227 TTAFSASPFRWLSWLSDSRATLTAA 251 (525)
T ss_pred HHHHHHCHHHHHHHHHHhCCeEEeC
Confidence 3 12 3556778888888886644
No 384
>TIGR03250 PhnAcAld_DH putative phosphonoacetaldehyde dehydrogenase. It seems reasonably certain then, that this enzyme catalyzes the NAD-dependent oxidation of phosphonoacetaldehyde to phosphonoacetate, bridging the metabolic gap between PhnW and PhnA. We propose the name phosphonoacetaldehyde dehydrogenase and the gene symbol PhnY for this enzyme.
Probab=27.30 E-value=3.8e+02 Score=24.95 Aligned_cols=77 Identities=14% Similarity=0.037 Sum_probs=47.4
Q ss_pred eEEEEccchhHHHHHHH-HHHHHhhcCCeEEEccC-CC---HHHHHHHHHhcc-----ceEEEec-HHHHHHHHcCCCCC
Q 019348 236 HVVLCVLPMFHVFGLSV-ILYDQLQKGNCVVSMGK-FD---IEMALRAIEKYR-----VTVWWVV-PPIILALAKNSLVR 304 (342)
Q Consensus 236 d~~~~~~p~~~~~g~~~-~~~~~l~~G~~~v~~~~-~~---~~~~~~~i~~~~-----~t~~~~~-P~~l~~l~~~~~~~ 304 (342)
-+++...|+.+...+.. .+..+|.+|.++++-+. .. ...+.+++++.+ ++++... ...-..|+.++
T Consensus 141 Gvv~~I~P~N~P~~~~~~~~~~ALaaGN~VvlKps~~~p~~~~~l~~~~~~aGlP~gvv~~v~g~~~~~~~~l~~~~--- 217 (472)
T TIGR03250 141 GVISAITPFNHPMNQVAHKIAPAIATNNRMVVKPSEKTPLSALYLADILYEAGLPPQMLQVVTGDPREIADELITNP--- 217 (472)
T ss_pred CEEEEEcCCcHHHHHHHHHHHHHHHcCCEEEEECCCcchHHHHHHHHHHHHcCCCcccEEEEecCchHHHHHHhcCC---
Confidence 67778888877764433 47889999999998643 33 345666677653 2333332 23455666554
Q ss_pred ccCCCCceEEEeeccc
Q 019348 305 KFDISSLKLVGSGAAP 320 (342)
Q Consensus 305 ~~~l~~lr~~~~gG~~ 320 (342)
.++.+.++|+.
T Consensus 218 -----~v~~v~fTGs~ 228 (472)
T TIGR03250 218 -----HVDLVTFTGGV 228 (472)
T ss_pred -----CCCEEEEECcH
Confidence 46666666643
No 385
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=27.28 E-value=2.9e+02 Score=26.14 Aligned_cols=56 Identities=13% Similarity=0.055 Sum_probs=32.0
Q ss_pred CCCEEEEECCCCChHHHHHHHHHHhCCeEeccCCC--CCHHHHHHHhhhcCceEEEEc
Q 019348 78 KKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPV--YTVSELSKQVKDSNPKLVITV 133 (342)
Q Consensus 78 ~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~--~~~~~l~~~l~~~~~~~vi~~ 133 (342)
.|.+|+|..+....+-++-+..-.+|..++.+... ...+.+...++.....+++.+
T Consensus 292 ~Gkrv~I~gd~~~a~~l~~~L~~ElGm~vv~~gt~~~~~~~~~~~~~~~~~~~~~i~~ 349 (519)
T PRK02910 292 TGKRVFVFGDATHAVAAARILSDELGFEVVGAGTYLREDARWVRAAAKEYGDEALITD 349 (519)
T ss_pred cCCEEEEEcCcHHHHHHHHHHHHhcCCeEEEEecCCcchhHHHHHHHHhcCCCeEEec
Confidence 46788888875544444444444688877655332 223445555555555555544
No 386
>TIGR01804 BADH glycine betaine aldehyde dehydrogenase. Betaine aldehyde dehydrogenase is a member of the aldehyde dehydrogenase family (pfam00171).
Probab=27.23 E-value=3.9e+02 Score=24.84 Aligned_cols=89 Identities=12% Similarity=0.030 Sum_probs=49.9
Q ss_pred CeEEEEccchhHHHHHHH-HHHHHhhcCCeEEEccC-C---CHHHHHHHHHhcc-----ceEEEec-HHHHHHHHcCCCC
Q 019348 235 DHVVLCVLPMFHVFGLSV-ILYDQLQKGNCVVSMGK-F---DIEMALRAIEKYR-----VTVWWVV-PPIILALAKNSLV 303 (342)
Q Consensus 235 ~d~~~~~~p~~~~~g~~~-~~~~~l~~G~~~v~~~~-~---~~~~~~~~i~~~~-----~t~~~~~-P~~l~~l~~~~~~ 303 (342)
--++++..|+.+...+.. .+..+|.+|.++++=+. . ....+.+++.+.+ ++++... ..+-..|..++
T Consensus 134 ~Gvv~~I~p~N~P~~~~~~~~~~ALaaGN~VvlKps~~tp~~~~~l~~~~~~aglP~gv~~~v~g~~~~~~~~L~~~~-- 211 (467)
T TIGR01804 134 LGVCVGIGAWNYPLQIASWKIAPALAAGNAMVFKPSEITPLTALKVAELMEEAGLPDGVFNVVLGKGAEVGEPLVNHK-- 211 (467)
T ss_pred eeEEEEECCCchHHHHHHHHHHHHHhcCCEEEeeCCccCcHHHHHHHHHHHHcCcCcCcEEEEeCCcHHHHHHHhcCC--
Confidence 456666777776655433 46788999999888643 2 3455666666642 2333332 34455565554
Q ss_pred CccCCCCceEEEeecccCC-HHHHHHHHH
Q 019348 304 RKFDISSLKLVGSGAAPLG-KELMEDCQK 331 (342)
Q Consensus 304 ~~~~l~~lr~~~~gG~~l~-~~~~~~~~~ 331 (342)
.++.+.+.|+.-- ..+.+...+
T Consensus 212 ------~v~~V~fTGs~~~g~~v~~~a~~ 234 (467)
T TIGR01804 212 ------DVAKVSFTGGVPTGKKIMAAAAD 234 (467)
T ss_pred ------CCCEEEEECcHHHHHHHHHHHHh
Confidence 3556666664322 344444433
No 387
>PF00148 Oxidored_nitro: Nitrogenase component 1 type Oxidoreductase; InterPro: IPR000510 Enzymes belonging to this family include cofactor-requiring nitrogenases and protochlorophyllide reductase. The key enzymatic reactions in nitrogen fixation are catalysed by the nitrogenase complex, which has two components, the iron protein (component 2), and a component (component 1) which is either a molybdenum-iron, vanadium-iron or iron-iron protein. The enzyme (1.18.6.1 from EC) forms a hexamer of two alpha, two beta and two delta chains. Protochlorophyllide reductase (1.3.1.33 from EC) is involved in the light-dependent accumulation of chlorophyll, probably at the step of reduction of protochlorophyllide to chlorophyllide.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QH1_C 1QH8_A 1H1L_C 1QGU_A 3AEK_C 3AET_C 3AER_C 3AEU_A 3AES_C 3AEQ_C ....
Probab=27.19 E-value=2.6e+02 Score=25.16 Aligned_cols=30 Identities=10% Similarity=0.079 Sum_probs=13.0
Q ss_pred CCEEEEECCCCChHHHHHHHHHHhCCeEecc
Q 019348 79 KDVVLIFAPNSIHFPICFLGVIAIGAIASTA 109 (342)
Q Consensus 79 g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l 109 (342)
|.+|+|.......+-++-+-. .+|..++-+
T Consensus 271 g~~v~i~~~~~~~~~l~~~L~-elG~~v~~v 300 (398)
T PF00148_consen 271 GKRVAIYGDPDRALGLARFLE-ELGMEVVAV 300 (398)
T ss_dssp T-EEEEESSHHHHHHHHHHHH-HTT-EEEEE
T ss_pred CceEEEEcCchhHHHHHHHHH-HcCCeEEEE
Confidence 556777666533222222222 566644433
No 388
>PRK09224 threonine dehydratase; Reviewed
Probab=27.06 E-value=5.3e+02 Score=24.36 Aligned_cols=91 Identities=18% Similarity=0.154 Sum_probs=54.6
Q ss_pred CceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeEeccCCCCCHHHHHHH
Q 019348 42 SKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQ 121 (342)
Q Consensus 42 ~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~ 121 (342)
.++.+-..+.+.+-||+. .-....++ .|.+....+| .|.+..+-....+.++|..+|.-++.+=|...+......
T Consensus 35 ~~i~lK~E~lqptgSfK~-RgA~n~i~-~l~~~~~~~g---vV~aSaGNha~avA~aa~~lGi~~~IvmP~~tp~~K~~~ 109 (504)
T PRK09224 35 NQVLLKREDLQPVFSFKL-RGAYNKMA-QLTEEQLARG---VITASAGNHAQGVALSAARLGIKAVIVMPVTTPDIKVDA 109 (504)
T ss_pred CEEEEEecCCCCCCCChH-HHHHHHHH-hhhHHhcCCE---EEEECcCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHH
Confidence 356666655455556655 11122232 2332111222 344556666777788899999876655565555666678
Q ss_pred hhhcCceEEEEcccch
Q 019348 122 VKDSNPKLVITVPELW 137 (342)
Q Consensus 122 l~~~~~~~vi~~~~~~ 137 (342)
++..+++++++.+...
T Consensus 110 ~r~~GA~Vi~~g~~~~ 125 (504)
T PRK09224 110 VRAFGGEVVLHGDSFD 125 (504)
T ss_pred HHhCCCEEEEECCCHH
Confidence 8999999999976543
No 389
>cd07091 ALDH_F1-2_Ald2-like ALDH subfamily: ALDH families 1and 2, including 10-formyltetrahydrofolate dehydrogenase, NAD+-dependent retinal dehydrogenase 1 and related proteins. ALDH subfamily which includes the NAD+-dependent retinal dehydrogenase 1 (RALDH 1, ALDH1, EC=1.2.1.36), also known as aldehyde dehydrogenase family 1 member A1 (ALDH1A1), in humans, a homotetrameric, cytosolic enzyme that catalyzes the oxidation of retinaldehyde to retinoic acid. Human ALDH1B1 and ALDH2 are also in this cluster; both are mitochrondrial homotetramers which play important roles in acetaldehyde oxidation; ALDH1B1 in response to UV light exposure and ALDH2 during ethanol metabolism. 10-formyltetrahydrofolate dehydrogenase (FTHFDH, EC=1.5.1.6), also known as aldehyde dehydrogenase family 1 member L1 (ALDH1L1), in humans, a multi-domain homotetramer with an N-terminal formyl transferase domain and a C-terminal ALDH domain. FTHFDH catalyzes an NADP+-dependent dehydrogenase reaction resulting in the co
Probab=27.04 E-value=2.5e+02 Score=26.20 Aligned_cols=79 Identities=16% Similarity=0.054 Sum_probs=46.5
Q ss_pred CCeEEEEccchhHHHHHHH-HHHHHhhcCCeEEEccC-CC---HHHHHHHHHhcc--ceEEEecH----HHHHHHHcCCC
Q 019348 234 LDHVVLCVLPMFHVFGLSV-ILYDQLQKGNCVVSMGK-FD---IEMALRAIEKYR--VTVWWVVP----PIILALAKNSL 302 (342)
Q Consensus 234 ~~d~~~~~~p~~~~~g~~~-~~~~~l~~G~~~v~~~~-~~---~~~~~~~i~~~~--~t~~~~~P----~~l~~l~~~~~ 302 (342)
+--+++...|+.+...+.. .+..+|.+|.++++-+. .. ...+.+++.+.+ ...+.+++ ..-..|..++
T Consensus 141 P~GVv~~I~p~N~P~~~~~~~~~~AL~aGN~VvlKps~~~p~~~~~l~~~~~~aglP~g~~~~v~g~~~~~~~~L~~~~- 219 (476)
T cd07091 141 PIGVCGQIIPWNFPLLMLAWKLAPALAAGNTVVLKPAEQTPLSALYLAELIKEAGFPPGVVNIVPGFGPTAGAAISSHM- 219 (476)
T ss_pred ceeEEEEECCCcCHHHHHHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHcCcCCCcEEEEeCCChhHHHHHhcCC-
Confidence 3356777788877655433 46789999999888643 32 356666666642 22333322 2445555543
Q ss_pred CCccCCCCceEEEeeccc
Q 019348 303 VRKFDISSLKLVGSGAAP 320 (342)
Q Consensus 303 ~~~~~l~~lr~~~~gG~~ 320 (342)
.++.+.++|+.
T Consensus 220 -------~vd~V~fTGs~ 230 (476)
T cd07091 220 -------DVDKIAFTGST 230 (476)
T ss_pred -------CcCEEEEECcH
Confidence 46667766643
No 390
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy
Probab=27.01 E-value=3.6e+02 Score=22.22 Aligned_cols=91 Identities=13% Similarity=0.046 Sum_probs=55.3
Q ss_pred CceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeEeccCCCCCHHHHHHH
Q 019348 42 SKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQ 121 (342)
Q Consensus 42 ~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~ 121 (342)
.++.+-..+.+-+-|+++-. +..+...+.+.|..+++.| +....+-.-..+.++|...|.-++.+-|..........
T Consensus 15 ~~l~~K~e~~~ptgS~K~R~--a~~~l~~a~~~g~~~~~~v-v~~ssGN~g~alA~~a~~~g~~~~v~~p~~~~~~~~~~ 91 (244)
T cd00640 15 ANIYLKLEFLNPTGSFKDRG--ALNLILLAEEEGKLPKGVI-IESTGGNTGIALAAAAARLGLKCTIVMPEGASPEKVAQ 91 (244)
T ss_pred CEEEEEecccCCcCCcHHHH--HHHHHHHHHHcCCCCCCEE-EEeCCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHH
Confidence 45555555433344443322 2223333444443234544 44444666677777888899877666666667777888
Q ss_pred hhhcCceEEEEccc
Q 019348 122 VKDSNPKLVITVPE 135 (342)
Q Consensus 122 l~~~~~~~vi~~~~ 135 (342)
++..+.+++.++..
T Consensus 92 ~~~~Ga~v~~~~~~ 105 (244)
T cd00640 92 MRALGAEVVLVPGD 105 (244)
T ss_pred HHHCCCEEEEECCC
Confidence 89999999998866
No 391
>PRK13578 ornithine decarboxylase; Provisional
Probab=26.95 E-value=2.2e+02 Score=28.25 Aligned_cols=48 Identities=23% Similarity=0.247 Sum_probs=34.6
Q ss_pred CCCCCEEEEECCCCChHHHHHHHHHHhCCeEeccCCCC---------CHHH-----HHHHhhhc
Q 019348 76 ITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVY---------TVSE-----LSKQVKDS 125 (342)
Q Consensus 76 ~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~---------~~~~-----l~~~l~~~ 125 (342)
+++||.|+ +-.|+...+.-- |+..+|+.+|-|.|.. +.++ +++.++..
T Consensus 211 ~~~Gd~VL-vdRN~HKSv~hg-aLiLsGa~PVYl~P~~n~~Gi~g~I~~~~~~~~~i~~~i~~~ 272 (720)
T PRK13578 211 LTPGDLVL-FDRNNHKSNHHG-ALIQAGATPVYLETARNPFGFIGGIDAHCFDEEYLREQIREV 272 (720)
T ss_pred cCCCCEEE-eecccHHHHHHH-HHHHcCCeEEEeeccccccCCcCCCChHHccHHHHHHHHHhc
Confidence 46899766 468887775432 6899999999988764 4333 77777765
No 392
>PRK13509 transcriptional repressor UlaR; Provisional
Probab=26.95 E-value=1.6e+02 Score=24.71 Aligned_cols=51 Identities=14% Similarity=-0.036 Sum_probs=23.9
Q ss_pred CeEEEccCCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeeccc
Q 019348 262 NCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAP 320 (342)
Q Consensus 262 ~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~ 320 (342)
.++.+-++.....+.+.|...++|++.-...+...|.+.+ +++.+++||..
T Consensus 95 ~~Ifld~GsT~~~la~~L~~~~ltVvTnsl~ia~~l~~~~--------~~~v~l~GG~~ 145 (251)
T PRK13509 95 ESVVINCGSTAFLLGRELCGKPVQIITNYLPLANYLIDQE--------HDSVIIMGGQY 145 (251)
T ss_pred CEEEECCcHHHHHHHHHhCCCCeEEEeCCHHHHHHHHhCC--------CCEEEEECCeE
Confidence 3333333333444555554444555555555555554432 34455555543
No 393
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=26.94 E-value=3.1e+02 Score=23.79 Aligned_cols=65 Identities=12% Similarity=0.108 Sum_probs=38.6
Q ss_pred HHHHhhhcccCCCceEEEeCCCCcceeHHHHHHHHHH-----------------HHHHHHHcCCCCCCEEEEECCCCChH
Q 019348 30 VHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIK-----------------VSHSFRHLGITKKDVVLIFAPNSIHF 92 (342)
Q Consensus 30 ~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~-----------------la~~L~~~g~~~g~~V~i~~~n~~~~ 92 (342)
.+.+.. .+..++++.|+.. +.+-|.+|..++.++ +|.+|++.. ..+++|.++...+..-
T Consensus 44 ~e~l~~-L~~~gK~i~fvTN--NStksr~~y~kK~~~lG~~~v~e~~i~ssa~~~a~ylk~~~-~~~k~Vyvig~~gi~~ 119 (306)
T KOG2882|consen 44 PEALNL-LKSLGKQIIFVTN--NSTKSREQYMKKFAKLGFNSVKEENIFSSAYAIADYLKKRK-PFGKKVYVIGEEGIRE 119 (306)
T ss_pred HHHHHH-HHHcCCcEEEEeC--CCcchHHHHHHHHHHhCccccCcccccChHHHHHHHHHHhC-cCCCeEEEecchhhhH
Confidence 444443 3445678888876 778888887776444 455565544 3456677766665544
Q ss_pred HHHHHH
Q 019348 93 PICFLG 98 (342)
Q Consensus 93 ~~~~lA 98 (342)
-.-..+
T Consensus 120 eL~~aG 125 (306)
T KOG2882|consen 120 ELDEAG 125 (306)
T ss_pred HHHHcC
Confidence 443333
No 394
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon. The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO.
Probab=26.92 E-value=5.3e+02 Score=24.10 Aligned_cols=61 Identities=10% Similarity=0.192 Sum_probs=43.2
Q ss_pred CHHHHHhhhccc-----CCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCC
Q 019348 28 SMVHFLFRNSAS-----YSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSI 90 (342)
Q Consensus 28 ~l~~~l~~~~~~-----~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~ 90 (342)
.+.+.+.+.... .-+..|+.... ....+|+++.+.++.++..+.+. +.++..+.|++.+..
T Consensus 354 ~l~~~i~~~l~~~~~~~~~~~~Alal~g-~~~~~f~~iq~lA~~i~~~~~~~-~~~~~Plivv~e~D~ 419 (473)
T PF06277_consen 354 ELAEAIREALEWFDLEGEDQPVALALPG-KPNPSFAEIQELAEAIAEGMAEL-INPDQPLIVVVEQDM 419 (473)
T ss_pred HHHHHHHHHHHhhcccCCCCcEEEEeCC-CCCCCHHHHHHHHHHHHHHHHhh-ccCCCCEEEEECchH
Confidence 555666655443 23456666542 56899999999999999999875 566777777777663
No 395
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=26.77 E-value=1.8e+02 Score=24.84 Aligned_cols=43 Identities=12% Similarity=0.294 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHcCCCCCCEEEEECCCCCh-HHHHHHHHHHhCCe
Q 019348 63 IVIKVSHSFRHLGITKKDVVLIFAPNSIH-FPICFLGVIAIGAI 105 (342)
Q Consensus 63 ~~~~la~~L~~~g~~~g~~V~i~~~n~~~-~~~~~lA~~~~G~~ 105 (342)
....+...|++.|+.+++.|.++|..+.. ...+++.+...|.-
T Consensus 71 ~~~~~~~~~~~~Gi~~d~~VVvyc~~~~~~a~~~~~~l~~~G~~ 114 (281)
T PRK11493 71 RPETFAVAMRELGVNQDKHLVVYDEGNLFSAPRAWWMLRTFGVE 114 (281)
T ss_pred CHHHHHHHHHHcCCCCCCEEEEECCCCCchHHHHHHHHHHhcCC
Confidence 35678888999999999999999976643 33455666777854
No 396
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional
Probab=26.67 E-value=5.3e+02 Score=24.08 Aligned_cols=47 Identities=11% Similarity=0.193 Sum_probs=35.1
Q ss_pred CceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCC
Q 019348 42 SKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSI 90 (342)
Q Consensus 42 ~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~ 90 (342)
+..|+... .....+|+++.+.++.++..+.+. .+++..+.|++.+..
T Consensus 374 ~~~alal~-g~~~~~y~~iq~la~~i~~~~~~~-~~~~~Pliiv~e~D~ 420 (475)
T PRK10719 374 DAYALALP-GSLPPSYAAIQTLAKALVDGVARF-PNKPHPLIVVAEQDM 420 (475)
T ss_pred CcEEEEcC-CCCCCCHHHHHHHHHHHHHHHHhh-ccCCCCEEEEEcccH
Confidence 44555544 368999999999999999999774 345667777777663
No 397
>cd07141 ALDH_F1AB_F2_RALDH1 NAD+-dependent retinal dehydrogenase 1, ALDH families 1A, 1B, and 2-like. NAD+-dependent retinal dehydrogenase 1 (RALDH 1, ALDH1, EC=1.2.1.36) also known as aldehyde dehydrogenase family 1 member A1 (ALDH1A1) in humans, is a homotetrameric, cytosolic enzyme that catalyzes the oxidation of retinaldehyde to retinoic acid. Human ALDH1B1 and ALDH2 are also in this cluster; both are mitochrondrial homotetramers which play important roles in acetaldehyde oxidation; ALDH1B1 in response to UV light exposure and ALDH2 during ethanol metabolism.
Probab=26.66 E-value=3.6e+02 Score=25.22 Aligned_cols=80 Identities=18% Similarity=0.025 Sum_probs=47.5
Q ss_pred CCeEEEEccchhHHHHHH-HHHHHHhhcCCeEEEccC-C---CHHHHHHHHHhcc-----ceEEEec-HHHHHHHHcCCC
Q 019348 234 LDHVVLCVLPMFHVFGLS-VILYDQLQKGNCVVSMGK-F---DIEMALRAIEKYR-----VTVWWVV-PPIILALAKNSL 302 (342)
Q Consensus 234 ~~d~~~~~~p~~~~~g~~-~~~~~~l~~G~~~v~~~~-~---~~~~~~~~i~~~~-----~t~~~~~-P~~l~~l~~~~~ 302 (342)
+--++....|+.+...+. ..+..+|.+|.++++-+. . ....+.+++.+.+ ++++... ...-..|..++
T Consensus 145 P~GVv~~I~p~N~P~~~~~~~~~~ALaaGN~VVlKps~~~p~~~~~l~~~l~~aGlP~gvv~~v~g~~~~~~~~L~~~~- 223 (481)
T cd07141 145 PVGVCGQIIPWNFPLLMAAWKLAPALACGNTVVLKPAEQTPLTALYLASLIKEAGFPPGVVNVVPGYGPTAGAAISSHP- 223 (481)
T ss_pred ceeEEEEEccChhHHHHHHHHHHHHHHcCCEEEEeCCCCCcHHHHHHHHHHHHcCcCccceEEEecCchHHHHHHhcCC-
Confidence 345777788887766552 347789999999888643 2 3355566666542 2333332 23445565544
Q ss_pred CCccCCCCceEEEeecccC
Q 019348 303 VRKFDISSLKLVGSGAAPL 321 (342)
Q Consensus 303 ~~~~~l~~lr~~~~gG~~l 321 (342)
.++.+.++|+.-
T Consensus 224 -------~vd~V~ftGs~~ 235 (481)
T cd07141 224 -------DIDKVAFTGSTE 235 (481)
T ss_pred -------CCCEEEEECcHH
Confidence 466677766443
No 398
>PRK13382 acyl-CoA synthetase; Provisional
Probab=26.64 E-value=3.9e+02 Score=25.17 Aligned_cols=84 Identities=10% Similarity=0.044 Sum_probs=56.3
Q ss_pred ceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChH-HHHHHHHHHhCCeEeccCCCCCHHHHHHHhhhcCceEEEE
Q 019348 54 SLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHF-PICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVIT 132 (342)
Q Consensus 54 ~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~-~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~ 132 (342)
.+|...+..... ..+...++.+++++....|-...+ +...++.+..|+..+.. +....+++...+++.++.++..
T Consensus 215 ~~s~~~~~~~~~---~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~g~~~~~~-~~~~~~~~~~~i~~~~vt~~~~ 290 (537)
T PRK13382 215 RRSGPGGIGTLK---AILDRTPWRAEEPTVIVAPMFHAWGFSQLVLAASLACTIVTR-RRFDPEATLDLIDRHRATGLAV 290 (537)
T ss_pred EeccchHHHHHH---HHHHhhCCCCCCeEEEecChHhhhHHHHHHHHHhcCcEEEEC-CCcCHHHHHHHHHHhCCEEEEe
Confidence 455544443333 333445677888887766654332 23456777788877654 5677888999999999999999
Q ss_pred cccchhhhh
Q 019348 133 VPELWDKVK 141 (342)
Q Consensus 133 ~~~~~~~~~ 141 (342)
.+.....+.
T Consensus 291 ~P~~~~~l~ 299 (537)
T PRK13382 291 VPVMFDRIM 299 (537)
T ss_pred hHHHHHHHH
Confidence 887766543
No 399
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=26.59 E-value=3.3e+02 Score=21.70 Aligned_cols=66 Identities=9% Similarity=0.003 Sum_probs=37.6
Q ss_pred HHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeEeccCCCC-C-----HHHHHHHhhhcCceEEEEcc
Q 019348 66 KVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVY-T-----VSELSKQVKDSNPKLVITVP 134 (342)
Q Consensus 66 ~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~-~-----~~~l~~~l~~~~~~~vi~~~ 134 (342)
.+...+.+.++. .+ |+++.+|..+..+.-+ +...|..+..+++.. . .+++...++..+++++++..
T Consensus 16 ~ll~~~~~~~l~-~~-I~~vi~~~~~~~~~~~-A~~~gip~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~iv~~~ 87 (190)
T TIGR00639 16 AIIDACKEGKIP-AS-VVLVISNKPDAYGLER-AAQAGIPTFVLSLKDFPSREAFDQAIIEELRAHEVDLVVLAG 87 (190)
T ss_pred HHHHHHHcCCCC-ce-EEEEEECCccchHHHH-HHHcCCCEEEECccccCchhhhhHHHHHHHHhcCCCEEEEeC
Confidence 344445443332 23 5555555555433322 356677665444322 1 45788899999999998753
No 400
>COG2885 OmpA Outer membrane protein and related peptidoglycan-associated (lipo)proteins [Cell envelope biogenesis, outer membrane]
Probab=26.57 E-value=2.3e+02 Score=22.41 Aligned_cols=58 Identities=12% Similarity=0.143 Sum_probs=39.3
Q ss_pred CHHHHHhhhcccCCCceEEEeCCCC--cceeHHH-H-HHHHHHHHHHHHHcCCCCCCEEEEEC
Q 019348 28 SMVHFLFRNSASYSSKLALIDADSD--ESLSFSQ-F-KSIVIKVSHSFRHLGITKKDVVLIFA 86 (342)
Q Consensus 28 ~l~~~l~~~~~~~p~~~a~~~~~~~--~~~Ty~~-l-~~~~~~la~~L~~~g~~~g~~V~i~~ 86 (342)
...+-+.+..+++|.....+.+-++ .+-.|.+ | .+|+..++.+|.+.|+..+ +|.+..
T Consensus 100 ~~L~~~a~~L~~~p~~~i~V~GHTD~~Gs~~yN~~LS~rRA~aV~~~L~~~Gv~~~-~i~~~G 161 (190)
T COG2885 100 ATLDELAKYLKKNPITRILVEGHTDSTGSDEYNQALSERRAEAVADYLVSQGVVAD-RISTVG 161 (190)
T ss_pred HHHHHHHHHHHhCCCcEEEEEecCCCCCCHHHhHHHHHHHHHHHHHHHHHcCCCcc-cEEEEE
Confidence 3455666777888877777755322 3444443 3 5679999999999998877 666653
No 401
>PLN02409 serine--glyoxylate aminotransaminase
Probab=26.51 E-value=4e+02 Score=24.11 Aligned_cols=33 Identities=9% Similarity=-0.122 Sum_probs=14.3
Q ss_pred HhCCeEeccCCCCCHHHHHHHhhhcCceEEEEc
Q 019348 101 AIGAIASTANPVYTVSELSKQVKDSNPKLVITV 133 (342)
Q Consensus 101 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~ 133 (342)
.-|--++..++.........+++..+.+++.+.
T Consensus 82 ~~Gd~Vlv~~~~~~~~~~~~~~~~~g~~v~~v~ 114 (401)
T PLN02409 82 SPGDKVVSFRIGQFSLLWIDQMQRLNFDVDVVE 114 (401)
T ss_pred CCCCEEEEeCCCchhHHHHHHHHHcCCceEEEE
Confidence 344433333433333333444555555555443
No 402
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=26.49 E-value=1.7e+02 Score=25.58 Aligned_cols=41 Identities=20% Similarity=0.249 Sum_probs=31.5
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCCChH-HHHHHHHHHhCCe
Q 019348 65 IKVSHSFRHLGITKKDVVLIFAPNSIHF-PICFLGVIAIGAI 105 (342)
Q Consensus 65 ~~la~~L~~~g~~~g~~V~i~~~n~~~~-~~~~lA~~~~G~~ 105 (342)
..++..|.+.|+.++++|.+++.++..+ ..+++.+..+|.-
T Consensus 89 ~~~~~~l~~~Gi~~~~~VVvY~~~g~~~a~r~~~~L~~~G~~ 130 (320)
T PLN02723 89 EAFAAAVSALGIENKDGVVVYDGKGIFSAARVWWMFRVFGHE 130 (320)
T ss_pred HHHHHHHHHcCCCCCCEEEEEcCCCcchHHHHHHHHHHcCCC
Confidence 5678889999999999999998777544 3445667778863
No 403
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=26.43 E-value=2.1e+02 Score=19.33 Aligned_cols=48 Identities=8% Similarity=0.070 Sum_probs=27.4
Q ss_pred ceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCC
Q 019348 54 SLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGA 104 (342)
Q Consensus 54 ~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~ 104 (342)
.+.+.++......+.. +.. ..+++.|.++|..+.....+...+...|.
T Consensus 34 ~ip~~~~~~~~~~~~~-~~~--~~~~~~ivv~c~~g~~s~~~~~~l~~~G~ 81 (96)
T cd01529 34 SIPGAALVLRSQELQA-LEA--PGRATRYVLTCDGSLLARFAAQELLALGG 81 (96)
T ss_pred eCCHHHhcCCHHHHHH-hhc--CCCCCCEEEEeCChHHHHHHHHHHHHcCC
Confidence 4455555443333332 222 35677788888877666666555666665
No 404
>PLN02527 aspartate carbamoyltransferase
Probab=26.11 E-value=4.4e+02 Score=22.95 Aligned_cols=55 Identities=11% Similarity=0.038 Sum_probs=38.5
Q ss_pred CCCEEEEEC-CCC-ChHHHHHHHHHHhCCeEeccCCC---------CCHHHHHHHhhhcCceEEEEc
Q 019348 78 KKDVVLIFA-PNS-IHFPICFLGVIAIGAIASTANPV---------YTVSELSKQVKDSNPKLVITV 133 (342)
Q Consensus 78 ~g~~V~i~~-~n~-~~~~~~~lA~~~~G~~~v~l~~~---------~~~~~l~~~l~~~~~~~vi~~ 133 (342)
+|..|++++ .+| ..-+..-.|+.++|+.++.+++. .+..+...++... +++|++-
T Consensus 38 ~gk~v~llF~epStRTR~SFe~A~~~LGg~~i~l~~~~~~s~~~kgEs~~Dta~vls~y-~D~iviR 103 (306)
T PLN02527 38 KGYLMATLFYEPSTRTRLSFESAMKRLGGEVLTTENAGEFSSAAKGETLEDTIRTVEGY-SDIIVLR 103 (306)
T ss_pred CCCEEEEEEcCCCchhHHHHHHHHHHcCCCEEEeCCCCCccccCCCcCHHHHHHHHHHh-CcEEEEE
Confidence 466666554 444 56778889999999999988773 2345566777777 6776653
No 405
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=26.09 E-value=3.8e+02 Score=22.49 Aligned_cols=79 Identities=18% Similarity=0.191 Sum_probs=53.2
Q ss_pred hhhcccCCCceEEEeC-C--CCcceeHHHHHHHHHHHHHHHHHcC-CCCCCEEEEECCCCChHHHHHHHHHHhCCeEecc
Q 019348 34 FRNSASYSSKLALIDA-D--SDESLSFSQFKSIVIKVSHSFRHLG-ITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTA 109 (342)
Q Consensus 34 ~~~~~~~p~~~a~~~~-~--~~~~~Ty~~l~~~~~~la~~L~~~g-~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l 109 (342)
.+.+-++++.+.+.-. + ..++..++++...-..+++.|.+.+ ..+.+.|.+-+|.++. ...--++..+-.+.+.+
T Consensus 69 ~~~~~~~~~g~~~LPfG~l~~~~~~~~~~l~~~~~~l~~~l~~l~~~~~~~~iliD~P~g~~-~~~~~al~~aD~vL~V~ 147 (243)
T PF06564_consen 69 QQAAYRYSDGVDFLPFGQLTEAEREAFEQLAQDPQWLARALAALKALGPYDWILIDTPPGPS-PYTRQALAAADLVLVVV 147 (243)
T ss_pred HHHhhccCCCCEEEcCCCCCHHHHHHHHHhhcCHHHHHHHHHHHhccCCCCEEEEeCCCCCc-HHHHHHHHhCCeEEEEe
Confidence 4444566777777733 2 1256667777777888899998887 6778899999988743 33334566666677777
Q ss_pred CCCC
Q 019348 110 NPVY 113 (342)
Q Consensus 110 ~~~~ 113 (342)
.|..
T Consensus 148 ~~Da 151 (243)
T PF06564_consen 148 NPDA 151 (243)
T ss_pred CCCH
Confidence 6654
No 406
>TIGR03374 ABALDH 1-pyrroline dehydrogenase. Members of this protein family are 1-pyrroline dehydrogenase (1.5.1.35), also called gamma-aminobutyraldehyde dehydrogenase. This enzyme can follow putrescine transaminase (EC 2.6.1.82) for a two-step conversion of putrescine to gamma-aminobutyric acid (GABA). The member from Escherichia coli is characterized as a homotetramer that binds one NADH per momomer. This enzyme belongs to the medium-chain aldehyde dehydrogenases, and is quite similar in sequence to the betaine aldehyde dehydrogenase (EC 1.2.1.8) family.
Probab=25.96 E-value=3.5e+02 Score=25.25 Aligned_cols=80 Identities=16% Similarity=0.151 Sum_probs=46.3
Q ss_pred CCeEEEEccchhHHHHHHHH-HHHHhhcCCeEEEccC-CC---HHHHHHHHHh-cc---ceEEEec-HHHHHHHHcCCCC
Q 019348 234 LDHVVLCVLPMFHVFGLSVI-LYDQLQKGNCVVSMGK-FD---IEMALRAIEK-YR---VTVWWVV-PPIILALAKNSLV 303 (342)
Q Consensus 234 ~~d~~~~~~p~~~~~g~~~~-~~~~l~~G~~~v~~~~-~~---~~~~~~~i~~-~~---~t~~~~~-P~~l~~l~~~~~~ 303 (342)
+--++....|+.+...+... +..+|.+|.++++=+. .. ...+.+++.+ .. ++++... ..+-..|..++
T Consensus 137 P~GVV~~I~PwN~P~~~~~~~~~~ALaaGN~VV~KPs~~tp~~~~~l~~l~~~~lP~gv~~~v~g~~~~~~~~L~~~~-- 214 (472)
T TIGR03374 137 PLGVVASIAPWNYPLMMAAWKLAPALAAGNCVVLKPSEITPLTALKLAELAKDIFPAGVVNILFGRGKTVGDPLTGHE-- 214 (472)
T ss_pred cceEEEEECCCCchHHHHHHHHHHHHhcCCEEEecCCCCCCHHHHHHHHHHHHhCCcCeEEEEecCchhHHHHHhcCC--
Confidence 44678888888777655333 6788999999988543 33 3444455443 22 2333331 23445565554
Q ss_pred CccCCCCceEEEeecccC
Q 019348 304 RKFDISSLKLVGSGAAPL 321 (342)
Q Consensus 304 ~~~~l~~lr~~~~gG~~l 321 (342)
.++.+.+.|+.-
T Consensus 215 ------~v~~V~fTGS~~ 226 (472)
T TIGR03374 215 ------KVRMVSLTGSIA 226 (472)
T ss_pred ------CcCEEEEECCHH
Confidence 466677766443
No 407
>PRK15029 arginine decarboxylase; Provisional
Probab=25.95 E-value=2.2e+02 Score=28.38 Aligned_cols=47 Identities=28% Similarity=0.289 Sum_probs=36.0
Q ss_pred CCCCCEEEEECCCCChHHHHHHHHHHhCCeEeccCCCC---------C-----HHHHHHHhhhc
Q 019348 76 ITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVY---------T-----VSELSKQVKDS 125 (342)
Q Consensus 76 ~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~---------~-----~~~l~~~l~~~ 125 (342)
+++||+|+ +..|+...+.. |+..+|+.++-+.|.. + ++.+.+.++..
T Consensus 242 ~~~gd~Vl-v~RN~HKSv~~--al~L~ga~Pvyl~P~~~~~Gi~~~i~~~~~~~e~i~~~l~~~ 302 (755)
T PRK15029 242 MTDNDVVV-VDRNCHKSIEQ--GLILTGAKPVYMVPSRNRYGIIGPIYPQEMQPETLQKKISES 302 (755)
T ss_pred cCCCCEEE-eecccHHHHHH--HHHHcCCeEEEecccccccCCccCCCccccCHHHHHHHHHhC
Confidence 37888766 56888887776 9999999999998764 3 66777777553
No 408
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=25.88 E-value=3.4e+02 Score=21.58 Aligned_cols=84 Identities=13% Similarity=0.011 Sum_probs=45.3
Q ss_pred HHHHhhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeEecc
Q 019348 30 VHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTA 109 (342)
Q Consensus 30 ~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l 109 (342)
...+.+...++.-..-+.+. +-..+..+..+...++..... .+.++++ ..|.--+.+.+-..+.|...|.+
T Consensus 17 a~~l~~~~~~~~~~~~~~~p--~l~~~p~~a~~~l~~~i~~~~------~~~~~li-GSSlGG~~A~~La~~~~~~avLi 87 (187)
T PF05728_consen 17 AQALKQYFAEHGPDIQYPCP--DLPPFPEEAIAQLEQLIEELK------PENVVLI-GSSLGGFYATYLAERYGLPAVLI 87 (187)
T ss_pred HHHHHHHHHHhCCCceEECC--CCCcCHHHHHHHHHHHHHhCC------CCCeEEE-EEChHHHHHHHHHHHhCCCEEEE
Confidence 45555555544333334444 444555555544444333331 1225555 45655555555556779999999
Q ss_pred CCCCCHHH-HHHHh
Q 019348 110 NPVYTVSE-LSKQV 122 (342)
Q Consensus 110 ~~~~~~~~-l~~~l 122 (342)
||...+.+ +...+
T Consensus 88 NPav~p~~~l~~~i 101 (187)
T PF05728_consen 88 NPAVRPYELLQDYI 101 (187)
T ss_pred cCCCCHHHHHHHhh
Confidence 99987654 44443
No 409
>TIGR01237 D1pyr5carbox2 delta-1-pyrroline-5-carboxylate dehydrogenase, group 2, putative. This enzyme is the second of two in the degradation of proline to glutamate. This model represents one of several related branches of delta-1-pyrroline-5-carboxylate dehydrogenase. Members of this branch may be associated with proline dehydrogenase (the other enzyme of the pathway from proline to glutamate) but have not been demonstrated experimentally. The branches are not as closely related to each other as some distinct aldehyde dehydrogenases are to some; separate models were built to let each model describe a set of equivalogs.
Probab=25.82 E-value=3.1e+02 Score=25.93 Aligned_cols=79 Identities=15% Similarity=0.156 Sum_probs=47.5
Q ss_pred CCeEEEEccchhHHHHHH-HHHHHHhhcCCeEEEccC-C---CHHHHHHHHHhc--cceEEEecH----HHHHHHHcCCC
Q 019348 234 LDHVVLCVLPMFHVFGLS-VILYDQLQKGNCVVSMGK-F---DIEMALRAIEKY--RVTVWWVVP----PIILALAKNSL 302 (342)
Q Consensus 234 ~~d~~~~~~p~~~~~g~~-~~~~~~l~~G~~~v~~~~-~---~~~~~~~~i~~~--~~t~~~~~P----~~l~~l~~~~~ 302 (342)
+--++.+..|+.+...+. ..+..+|.+|.++++-+. . ....+.+++.+. ...++.+++ ..-+.|..++
T Consensus 167 P~GVV~~I~P~N~P~~~~~~~i~~ALaaGN~VVlKPs~~tp~~~~~l~~~~~~aGlP~gvv~vv~g~~~~~~~~L~~~~- 245 (511)
T TIGR01237 167 PRGVAVVISPWNFPMAIAVGMTVAPIVTGNCVVLKPAETSTVIAAKIVEILIEAGLPPGVFQFVPGKGSEVGSYLVNHP- 245 (511)
T ss_pred cceeEEEECCCCcHHHHHHHHHHHHHHcCCEEEEECCCCCcHHHHHHHHHHHHhCCCCCcEEEccCCCchhHHHHhcCC-
Confidence 345777888887765442 458899999999998643 3 335556666653 233333332 2345555543
Q ss_pred CCccCCCCceEEEeeccc
Q 019348 303 VRKFDISSLKLVGSGAAP 320 (342)
Q Consensus 303 ~~~~~l~~lr~~~~gG~~ 320 (342)
.++.+.++|+.
T Consensus 246 -------~v~~V~fTGs~ 256 (511)
T TIGR01237 246 -------KTHLITFTGSR 256 (511)
T ss_pred -------CCCeEEEECch
Confidence 46667666644
No 410
>COG5012 Predicted cobalamin binding protein [General function prediction only]
Probab=25.73 E-value=3.8e+02 Score=22.09 Aligned_cols=82 Identities=11% Similarity=0.142 Sum_probs=47.2
Q ss_pred hhHHHHHHHHHHHHhhc--CCeEEEc-cCCCHHHHHHHHHhccceEEEecHHHH------HHHHcCCCCCccCCCCceEE
Q 019348 244 MFHVFGLSVILYDQLQK--GNCVVSM-GKFDIEMALRAIEKYRVTVWWVVPPII------LALAKNSLVRKFDISSLKLV 314 (342)
Q Consensus 244 ~~~~~g~~~~~~~~l~~--G~~~v~~-~~~~~~~~~~~i~~~~~t~~~~~P~~l------~~l~~~~~~~~~~l~~lr~~ 314 (342)
=.|..|- .+..+++. |--++=. ....++.+.+..+++|+.++.++-.+= +.+.+..+.... -.++ .+
T Consensus 115 DvHdIGk--~iV~~ml~~aGfevidLG~dvP~e~fve~a~e~k~d~v~~SalMTttm~~~~~viE~L~eeGi-Rd~v-~v 190 (227)
T COG5012 115 DVHDIGK--NIVATMLEAAGFEVIDLGRDVPVEEFVEKAKELKPDLVSMSALMTTTMIGMKDVIELLKEEGI-RDKV-IV 190 (227)
T ss_pred cHHHHHH--HHHHHHHHhCCcEEEecCCCCCHHHHHHHHHHcCCcEEechHHHHHHHHHHHHHHHHHHHcCC-ccCe-EE
Confidence 3666664 33444433 4443333 456789999999999999887764322 222222211111 1112 46
Q ss_pred EeecccCCHHHHHHH
Q 019348 315 GSGAAPLGKELMEDC 329 (342)
Q Consensus 315 ~~gG~~l~~~~~~~~ 329 (342)
.+||+|++.+..++.
T Consensus 191 ~vGGApvtq~~a~~i 205 (227)
T COG5012 191 MVGGAPVTQDWADKI 205 (227)
T ss_pred eecCccccHHHHHHh
Confidence 679999998777654
No 411
>cd07120 ALDH_PsfA-ACA09737 Pseudomonas putida aldehyde dehydrogenase PsfA (ACA09737)-like. Included in this CD is the aldehyde dehydrogenase (PsfA, locus ACA09737) of Pseudomonas putida involved in furoic acid metabolism. Transcription of psfA was induced in response to 2-furoic acid, furfuryl alcohol, and furfural.
Probab=25.73 E-value=3.6e+02 Score=25.02 Aligned_cols=79 Identities=15% Similarity=0.064 Sum_probs=47.1
Q ss_pred CCeEEEEccchhHHHHHHH-HHHHHhhcCCeEEEccC-C---CHHHHHHHHHh---cc---ceEEEec-HHHHHHHHcCC
Q 019348 234 LDHVVLCVLPMFHVFGLSV-ILYDQLQKGNCVVSMGK-F---DIEMALRAIEK---YR---VTVWWVV-PPIILALAKNS 301 (342)
Q Consensus 234 ~~d~~~~~~p~~~~~g~~~-~~~~~l~~G~~~v~~~~-~---~~~~~~~~i~~---~~---~t~~~~~-P~~l~~l~~~~ 301 (342)
+--++....|+.+...+.. .+..+|.+|.++++-+. . ....+.+++++ .. ++++... +..-..|.+++
T Consensus 117 P~Gvv~~I~P~N~P~~~~~~~~~~AL~aGN~vvlKps~~~~~~~~~l~~~~~~aag~P~g~~~~v~g~~~~~~~~l~~~~ 196 (455)
T cd07120 117 PMGVAGIIVPWNSPVVLLVRSLAPALAAGCTVVVKPAGQTAQINAAIIRILAEIPSLPAGVVNLFTESGSEGAAHLVASP 196 (455)
T ss_pred cceeEEEECCCchHHHHHHHHHHHHHHcCCEEEeECCCCChHHHHHHHHHHHHhcCCCccceEEEecCchhHHHHHhcCC
Confidence 4467777888877655433 47789999999888643 3 23556666666 22 3333332 23556666654
Q ss_pred CCCccCCCCceEEEeeccc
Q 019348 302 LVRKFDISSLKLVGSGAAP 320 (342)
Q Consensus 302 ~~~~~~l~~lr~~~~gG~~ 320 (342)
.++.+.++|+.
T Consensus 197 --------~v~~v~fTGs~ 207 (455)
T cd07120 197 --------DVDVISFTGST 207 (455)
T ss_pred --------CCCEEEEECCH
Confidence 35556665533
No 412
>cd07103 ALDH_F5_SSADH_GabD Mitochondrial succinate-semialdehyde dehydrogenase and ALDH family members 5A1 and 5F1-like. Succinate-semialdehyde dehydrogenase, mitochondrial (SSADH, GabD, EC=1.2.1.24) catalyzes the NAD+-dependent oxidation of succinate semialdehyde (SSA) to succinate. This group includes the human aldehyde dehydrogenase family 5 member A1 (ALDH5A1) which is a mitochondrial homotetramer that converts SSA to succinate in the last step of 4-aminobutyric acid (GABA) catabolism. This CD also includes the Arabidopsis SSADH gene product ALDH5F1. Mutations in this gene result in the accumulation of H2O2, suggesting a role in plant defense against the environmental stress of elevated reactive oxygen species.
Probab=25.67 E-value=4.3e+02 Score=24.36 Aligned_cols=77 Identities=16% Similarity=0.025 Sum_probs=45.2
Q ss_pred CeEEEEccchhHHHHH-HHHHHHHhhcCCeEEEccC-C---CHHHHHHHHHhcc-----ceEEEec-HHHHHHHHcCCCC
Q 019348 235 DHVVLCVLPMFHVFGL-SVILYDQLQKGNCVVSMGK-F---DIEMALRAIEKYR-----VTVWWVV-PPIILALAKNSLV 303 (342)
Q Consensus 235 ~d~~~~~~p~~~~~g~-~~~~~~~l~~G~~~v~~~~-~---~~~~~~~~i~~~~-----~t~~~~~-P~~l~~l~~~~~~ 303 (342)
--++++..|+.+.... ...+..+|.+|.++++-+. . ....+.+++++.+ ++++... ....+.|..++
T Consensus 118 ~Gvv~~i~p~N~P~~~~~~~~~~AL~aGN~VIlKps~~~~~~~~~l~~~l~~aglP~g~v~~v~~~~~~~~~~l~~~~-- 195 (451)
T cd07103 118 VGVVAAITPWNFPAAMITRKIAPALAAGCTVVLKPAEETPLSALALAELAEEAGLPAGVLNVVTGSPAEIGEALCASP-- 195 (451)
T ss_pred ceEEEEECCCchHHHHHHHHHHHHHHcCCEEEEECCccCcHHHHHHHHHHHHcCCCcccEEEEecCchhHHHHHhcCC--
Confidence 3567777787665443 2357899999999888643 2 2356666676642 2333332 23445555543
Q ss_pred CccCCCCceEEEeecc
Q 019348 304 RKFDISSLKLVGSGAA 319 (342)
Q Consensus 304 ~~~~l~~lr~~~~gG~ 319 (342)
.++.+.++|+
T Consensus 196 ------~vd~V~ftGs 205 (451)
T cd07103 196 ------RVRKISFTGS 205 (451)
T ss_pred ------CCCEEEEECC
Confidence 4566666664
No 413
>KOG1252 consensus Cystathionine beta-synthase and related enzymes [Amino acid transport and metabolism]
Probab=25.63 E-value=4.3e+02 Score=23.41 Aligned_cols=64 Identities=14% Similarity=-0.013 Sum_probs=50.9
Q ss_pred HHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeEeccCCCCCHHHHHHHhhhcCceEEEEccc
Q 019348 72 RHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPE 135 (342)
Q Consensus 72 ~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~ 135 (342)
++--+.+|..+++--..+---+...+.|..-|.-++..=|..-..|-...|+..+..+|.++.+
T Consensus 96 ~~G~i~pg~stliEpTSGNtGigLA~~~a~~Gyk~i~tmP~~ms~Ek~~~l~a~Gaeii~tp~a 159 (362)
T KOG1252|consen 96 KKGLITPGKSTLIEPTSGNTGIGLAYMAALRGYKCIITMPEKMSKEKRILLRALGAEIILTPPA 159 (362)
T ss_pred HcCCccCCceEEEecCCCchHHHHHHHHHHcCceEEEEechhhhHHHHHHHHHcCCEEEecChH
Confidence 3435688888888777777778888888888987777767766677888999999999999854
No 414
>PRK13390 acyl-CoA synthetase; Provisional
Probab=25.56 E-value=5.4e+02 Score=23.78 Aligned_cols=94 Identities=13% Similarity=0.077 Sum_probs=61.9
Q ss_pred CCCCeEEEEcCCCCCCCchhhhHhHHHHHHHhhhhhhhh-ccccCCCeEEEEccchhHHHHHHHHHHHHhhcCCeEEEc-
Q 019348 190 KQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQ-ELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSM- 267 (342)
Q Consensus 190 ~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~-~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~- 267 (342)
.++.++++... +| ..+|+..+...+..+.... ..+..++|++....+-.. .++..++.++..|+..+..
T Consensus 10 ~p~~~a~~~~~---~~----~~lTy~el~~~~~~la~~L~~~gv~~gd~V~i~~~n~~--~~~~~~la~~~~Ga~~~~l~ 80 (501)
T PRK13390 10 APDRPAVIVAE---TG----EQVSYRQLDDDSAALARVLYDAGLRTGDVVALLSDNSP--EALVVLWAALRSGLYITAIN 80 (501)
T ss_pred CCCCcEEEecC---CC----eEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCH--HHHHHHHHHHHhCCEEeccc
Confidence 45666665422 22 2478888877655543222 223567888888776655 3336789999999988766
Q ss_pred cCCCHHHHHHHHHhccceEEEecHH
Q 019348 268 GKFDIEMALRAIEKYRVTVWWVVPP 292 (342)
Q Consensus 268 ~~~~~~~~~~~i~~~~~t~~~~~P~ 292 (342)
+...+..+...++..++..+.....
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~i~~~~ 105 (501)
T PRK13390 81 HHLTAPEADYIVGDSGARVLVASAA 105 (501)
T ss_pred cCCCHHHHHHHHHhcCCcEEEEcch
Confidence 4467788888888888888776543
No 415
>PRK11904 bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed
Probab=25.55 E-value=2.7e+02 Score=29.10 Aligned_cols=79 Identities=16% Similarity=0.185 Sum_probs=48.9
Q ss_pred CCeEEEEccchhHHHHH-HHHHHHHhhcCCeEEEccC-CC---HHHHHHHHHhc--cceEEEecHH----HHHHHHcCCC
Q 019348 234 LDHVVLCVLPMFHVFGL-SVILYDQLQKGNCVVSMGK-FD---IEMALRAIEKY--RVTVWWVVPP----IILALAKNSL 302 (342)
Q Consensus 234 ~~d~~~~~~p~~~~~g~-~~~~~~~l~~G~~~v~~~~-~~---~~~~~~~i~~~--~~t~~~~~P~----~l~~l~~~~~ 302 (342)
+-.++++..|+.+...+ ...+..+|.+|.++++-+. .. ...+.+++.+. ...++.++|. +-..|+.++
T Consensus 684 P~GVv~~IsPwNfPlai~~~~i~aALaaGNtVIlKPse~tpl~a~~l~~ll~eAGlP~gvl~lv~G~g~~vg~~Lv~~p- 762 (1038)
T PRK11904 684 GRGVFVCISPWNFPLAIFLGQVAAALAAGNTVIAKPAEQTPLIAAEAVKLLHEAGIPKDVLQLLPGDGATVGAALTADP- 762 (1038)
T ss_pred cceEEEEECCCccHHHHHHHHHHHHHHcCCEEEeeCCCcCHHHHHHHHHHHHHhCcCcceEEEeeCCchHHHHHHhcCC-
Confidence 34578888998775544 2458899999999888643 22 34556666664 3344444442 455666554
Q ss_pred CCccCCCCceEEEeeccc
Q 019348 303 VRKFDISSLKLVGSGAAP 320 (342)
Q Consensus 303 ~~~~~l~~lr~~~~gG~~ 320 (342)
.++.+.++|+.
T Consensus 763 -------~v~~V~FTGS~ 773 (1038)
T PRK11904 763 -------RIAGVAFTGST 773 (1038)
T ss_pred -------CcCeEEEECCH
Confidence 45667766644
No 416
>PRK06234 methionine gamma-lyase; Provisional
Probab=25.53 E-value=4.5e+02 Score=23.80 Aligned_cols=55 Identities=16% Similarity=0.100 Sum_probs=23.5
Q ss_pred CCCCCEEEEECCCCChHHH-HHHHHHHhCCeEeccCCCCCHHHHHHHhhhcCceEEEE
Q 019348 76 ITKKDVVLIFAPNSIHFPI-CFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVIT 132 (342)
Q Consensus 76 ~~~g~~V~i~~~n~~~~~~-~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~ 132 (342)
+++||.|++..+....... ...++-..|+.++.++.. ..+++...++. +.++|++
T Consensus 100 l~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~vd~~-d~e~l~~~i~~-~tklI~i 155 (400)
T PRK06234 100 LKAGDHVVASDTLYGCTFALLNHGLTRYGVEVTFVDTS-NLEEVRNALKA-NTKVVYL 155 (400)
T ss_pred hCCCCEEEEecCccchHHHHHHHHHhhCCeEEEEECCC-CHHHHHHHhcc-CCeEEEE
Confidence 3556665544332221111 122344556655555443 33444444432 3445543
No 417
>PRK06018 putative acyl-CoA synthetase; Provisional
Probab=25.49 E-value=3.2e+02 Score=25.72 Aligned_cols=84 Identities=12% Similarity=-0.072 Sum_probs=56.7
Q ss_pred hHhHHHHHHHhhhhhhhh-ccccCCCeEEEEccchhHHHHHHHHHHHHhhcCCeEEEcc-CCCHHHHHHHHHhccceEEE
Q 019348 211 ILTHKNFIAASLMISAHQ-ELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMG-KFDIEMALRAIEKYRVTVWW 288 (342)
Q Consensus 211 ~~t~~~l~~~~~~~~~~~-~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~ 288 (342)
.+|+..+...+..+.... ..+...+|++....+-... .+..++.++..|+..+... ...++.+...+++.++..++
T Consensus 39 ~~Ty~el~~~v~~la~~L~~~g~~~gd~v~i~~~~~~~--~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~ 116 (542)
T PRK06018 39 RTTYAQIHDRALKVSQALDRDGIKLGDRVATIAWNTWR--HLEAWYGIMGIGAICHTVNPRLFPEQIAWIINHAEDRVVI 116 (542)
T ss_pred EEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchH--HHHHHHHHHhcCeEeeccccccCHHHHHHHHhccCCCEEE
Confidence 457777776654433222 2345677887777665443 2256788888999887764 46789999999999999988
Q ss_pred ecHHHHHH
Q 019348 289 VVPPIILA 296 (342)
Q Consensus 289 ~~P~~l~~ 296 (342)
........
T Consensus 117 ~~~~~~~~ 124 (542)
T PRK06018 117 TDLTFVPI 124 (542)
T ss_pred EccccHHH
Confidence 87654433
No 418
>cd07112 ALDH_GABALDH-PuuC Escherichia coli NADP+-dependent gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase PuuC-like. NADP+-dependent, gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase (GABALDH) PuuC of Escherichia coli which catalyzes the conversion of putrescine to 4-aminobutanoate and other similar sequences are present in this CD.
Probab=25.43 E-value=3.8e+02 Score=24.90 Aligned_cols=78 Identities=15% Similarity=-0.020 Sum_probs=46.4
Q ss_pred CeEEEEccchhHHHHHHH-HHHHHhhcCCeEEEccC-CC---HHHHHHHHHhcc-----ceEEEec-HHHHHHHHcCCCC
Q 019348 235 DHVVLCVLPMFHVFGLSV-ILYDQLQKGNCVVSMGK-FD---IEMALRAIEKYR-----VTVWWVV-PPIILALAKNSLV 303 (342)
Q Consensus 235 ~d~~~~~~p~~~~~g~~~-~~~~~l~~G~~~v~~~~-~~---~~~~~~~i~~~~-----~t~~~~~-P~~l~~l~~~~~~ 303 (342)
--++.+..|+.+...+.. .+..+|..|.++++-+. .. ...+.+++.+.+ ++++... ...-..|..++
T Consensus 125 ~GvV~~i~p~N~P~~~~~~~~~~ALaaGN~Vv~Kps~~~p~~~~~l~~~~~~aGlP~g~v~~v~g~~~~~~~~l~~~~-- 202 (462)
T cd07112 125 LGVVGAVVPWNFPLLMAAWKIAPALAAGNSVVLKPAEQSPLTALRLAELALEAGLPAGVLNVVPGFGHTAGEALGLHM-- 202 (462)
T ss_pred eeeEEEECCCchHHHHHHHHHHHHHHcCCeeeeeCCCCCCHHHHHHHHHHHhcCCCCCcEEEEeCCCchHHHHHhcCC--
Confidence 347777888877665533 46789999999988643 33 355666666642 3333331 23445555443
Q ss_pred CccCCCCceEEEeeccc
Q 019348 304 RKFDISSLKLVGSGAAP 320 (342)
Q Consensus 304 ~~~~l~~lr~~~~gG~~ 320 (342)
.++.+.++|+.
T Consensus 203 ------~v~~V~fTGs~ 213 (462)
T cd07112 203 ------DVDALAFTGST 213 (462)
T ss_pred ------CcCEEEEECCH
Confidence 46666666643
No 419
>cd07142 ALDH_F2BC Arabidosis aldehyde dehydrogenase family 2 B4, B7, C4-like. Included in this CD is the Arabidosis aldehyde dehydrogenase family 2 members B4 and B7 (EC=1.2.1.3), which are mitochondrial homotetramers that oxidize acetaldehyde and glycolaldehyde, but not L-lactaldehyde. Also in this group, is the Arabidosis cytosolic, homotetramer ALDH2C4 (EC=1.2.1.3), an enzyme involved in the oxidation of sinapalehyde and coniferaldehyde.
Probab=25.41 E-value=3.9e+02 Score=24.93 Aligned_cols=81 Identities=14% Similarity=-0.038 Sum_probs=48.6
Q ss_pred CCeEEEEccchhHHHHHH-HHHHHHhhcCCeEEEccC-CC---HHHHHHHHHhcc-----ceEEEecH-HHHHHHHcCCC
Q 019348 234 LDHVVLCVLPMFHVFGLS-VILYDQLQKGNCVVSMGK-FD---IEMALRAIEKYR-----VTVWWVVP-PIILALAKNSL 302 (342)
Q Consensus 234 ~~d~~~~~~p~~~~~g~~-~~~~~~l~~G~~~v~~~~-~~---~~~~~~~i~~~~-----~t~~~~~P-~~l~~l~~~~~ 302 (342)
+--+++...|+.+...+. ..+..+|..|.++++-+. .. ...+.+++.+.+ ++++.... ..-..|..++
T Consensus 141 P~GVv~~I~pwN~P~~~~~~~i~~ALaaGN~VV~KPs~~tp~~~~~l~~~~~~aGlP~gvv~~v~g~~~~~~~~L~~~~- 219 (476)
T cd07142 141 PIGVVGQIIPWNFPLLMFAWKVGPALACGNTIVLKPAEQTPLSALLAAKLAAEAGLPDGVLNIVTGFGPTAGAAIASHM- 219 (476)
T ss_pred ceeeEEEECCCccHHHHHHHHHHHHHHcCCEEEEECCCcccHHHHHHHHHHHHcCcCcccEEEEeCCchhHHHHHhcCC-
Confidence 445777888877766553 347789999999998643 32 355666666652 33333322 2445565554
Q ss_pred CCccCCCCceEEEeecccCC
Q 019348 303 VRKFDISSLKLVGSGAAPLG 322 (342)
Q Consensus 303 ~~~~~l~~lr~~~~gG~~l~ 322 (342)
.++.+.++|+.-.
T Consensus 220 -------~v~~v~fTGs~~~ 232 (476)
T cd07142 220 -------DVDKVAFTGSTEV 232 (476)
T ss_pred -------CCCEEEEECcHHH
Confidence 3666777775443
No 420
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=25.35 E-value=2.3e+02 Score=19.40 Aligned_cols=66 Identities=17% Similarity=0.202 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHcCCC---------CCCEEEEEC-CCCChHHHHHHHHHHhCCeEeccCCCCCHHHHHHHh
Q 019348 57 FSQFKSIVIKVSHSFRHLGIT---------KKDVVLIFA-PNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQV 122 (342)
Q Consensus 57 y~~l~~~~~~la~~L~~~g~~---------~g~~V~i~~-~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l 122 (342)
..+..+|..++...+.+.|.+ +=|.|.|+- |+......+.+++...|.+-.-.-+..+.+++.+++
T Consensus 15 ~~~~~~R~~a~~~~~e~~Gg~l~~~y~t~G~yD~v~i~eaPD~~~a~~~~l~i~~~G~v~~et~~a~~~~e~~~~~ 90 (91)
T PF08734_consen 15 IKDSPDRAEAVRALIEALGGKLKSFYWTLGEYDFVVIVEAPDDETAAAASLAIRSSGNVRTETLRAFPWDEFDEIV 90 (91)
T ss_pred HhhcHHHHHHHHHHHHHcCCEEEEEEEecCCCCEEEEEEcCCHHHHHHHHHHHHcCCceEEEEEecCCHHHHHHHh
Confidence 334455556666666665543 335565554 666667778899999997766666777888877665
No 421
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=25.23 E-value=1.7e+02 Score=20.75 Aligned_cols=33 Identities=15% Similarity=0.169 Sum_probs=26.3
Q ss_pred hCCeEeccCCCCCHHHHHHHhhhcCceEEEEcc
Q 019348 102 IGAIASTANPVYTVSELSKQVKDSNPKLVITVP 134 (342)
Q Consensus 102 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~ 134 (342)
.|.-+..++.+.+.+++.+.+.+.+|++|..+-
T Consensus 27 ~G~~v~~~d~~~~~~~l~~~~~~~~pd~V~iS~ 59 (121)
T PF02310_consen 27 AGHEVDILDANVPPEELVEALRAERPDVVGISV 59 (121)
T ss_dssp TTBEEEEEESSB-HHHHHHHHHHTTCSEEEEEE
T ss_pred CCCeEEEECCCCCHHHHHHHHhcCCCcEEEEEc
Confidence 377777788888888999999999999988764
No 422
>TIGR00623 sula cell division inhibitor SulA. All proteins in this family for which the functions are known are cell division inhibitors. In E. coli, SulA is one of the SOS regulated genes.
Probab=25.23 E-value=2.5e+02 Score=21.99 Aligned_cols=16 Identities=19% Similarity=0.366 Sum_probs=8.4
Q ss_pred HHHHHhhhcCceEEEE
Q 019348 117 ELSKQVKDSNPKLVIT 132 (342)
Q Consensus 117 ~l~~~l~~~~~~~vi~ 132 (342)
..++.|+.-.+.+|++
T Consensus 101 a~EQaLrSG~c~aVL~ 116 (168)
T TIGR00623 101 SMIRALRTGNYSVVIG 116 (168)
T ss_pred HHHHHHHhCCCcEEEe
Confidence 3444555555555555
No 423
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=25.14 E-value=3.8e+02 Score=21.85 Aligned_cols=83 Identities=5% Similarity=-0.018 Sum_probs=55.0
Q ss_pred CcceeHHHHHHHHHHHHHHH-------HHcC-C-CCCCEEEEECCCCC--h--HHHHHHHHHHhCCeEeccCCCCCHHHH
Q 019348 52 DESLSFSQFKSIVIKVSHSF-------RHLG-I-TKKDVVLIFAPNSI--H--FPICFLGVIAIGAIASTANPVYTVSEL 118 (342)
Q Consensus 52 ~~~~Ty~~l~~~~~~la~~L-------~~~g-~-~~g~~V~i~~~n~~--~--~~~~~lA~~~~G~~~v~l~~~~~~~~l 118 (342)
...+|-.|.+-.++.+...| .+.. . ....+|.+.+..+- + ...+-...-..|.-++-+..+.+.+++
T Consensus 52 ~gei~vaqe~~as~~~~~~l~~l~~~l~~~~~~~~~~~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~~ 131 (213)
T cd02069 52 AGKMFLPQVLKSARVMKAAVAYLEPYMEKEKGENSSKGKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMVPIEKI 131 (213)
T ss_pred cCCCcHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCCCHHHH
Confidence 35677777666555444433 2222 1 12346667666553 2 223344455689999999999999999
Q ss_pred HHHhhhcCceEEEEcc
Q 019348 119 SKQVKDSNPKLVITVP 134 (342)
Q Consensus 119 ~~~l~~~~~~~vi~~~ 134 (342)
...+++.+|++|..+.
T Consensus 132 v~~~~~~~~~~V~lS~ 147 (213)
T cd02069 132 LEAAKEHKADIIGLSG 147 (213)
T ss_pred HHHHHHcCCCEEEEcc
Confidence 9999999999998763
No 424
>PLN02466 aldehyde dehydrogenase family 2 member
Probab=25.09 E-value=4.3e+02 Score=25.23 Aligned_cols=81 Identities=15% Similarity=0.010 Sum_probs=48.9
Q ss_pred CCeEEEEccchhHHHHHHH-HHHHHhhcCCeEEEccC-C---CHHHHHHHHHhcc-----ceEEEec-HHHHHHHHcCCC
Q 019348 234 LDHVVLCVLPMFHVFGLSV-ILYDQLQKGNCVVSMGK-F---DIEMALRAIEKYR-----VTVWWVV-PPIILALAKNSL 302 (342)
Q Consensus 234 ~~d~~~~~~p~~~~~g~~~-~~~~~l~~G~~~v~~~~-~---~~~~~~~~i~~~~-----~t~~~~~-P~~l~~l~~~~~ 302 (342)
+--++....|+.+...+.. .+..+|.+|.++++=+. . ....+.+++++.+ ++++... +..-..|..++
T Consensus 195 P~GVV~~I~PwN~P~~l~~~~i~pALaaGN~VVlKPs~~tp~~~~~l~~ll~eaGlP~gvv~vv~g~~~~~~~~L~~~~- 273 (538)
T PLN02466 195 PIGVAGQIIPWNFPLLMFAWKVGPALACGNTIVLKTAEQTPLSALYAAKLLHEAGLPPGVLNVVSGFGPTAGAALASHM- 273 (538)
T ss_pred cceEEEEECCCchHHHHHHHHHhHHHHcCCEEEeECCCCCcHHHHHHHHHHHhcCCCcccEEEEecCchhHHHHHhcCC-
Confidence 4467777888887766533 36789999999998643 3 3355566666642 3444432 23445565554
Q ss_pred CCccCCCCceEEEeecccCC
Q 019348 303 VRKFDISSLKLVGSGAAPLG 322 (342)
Q Consensus 303 ~~~~~l~~lr~~~~gG~~l~ 322 (342)
.++.+.++|++--
T Consensus 274 -------~vd~V~FTGS~~~ 286 (538)
T PLN02466 274 -------DVDKLAFTGSTDT 286 (538)
T ss_pred -------CcCEEEEECCHHH
Confidence 3666777665433
No 425
>cd01563 Thr-synth_1 Threonine synthase is a pyridoxal phosphate (PLP) dependent enzyme that catalyses the last reaction in the synthesis of threonine from aspartate. It proceeds by converting O-phospho-L-homoserine (OPH) into threonine and inorganic phosphate. In plants, OPH is an intermediate between the methionine and threonine/isoleucine pathways. Thus threonine synthase competes for OPH with cystathionine-gamma-synthase, the first enzyme in the methionine pathway. These enzymes are in general dimers. Members of this CD, Thr-synth_1, are widely distributed in bacteria, archaea and higher plants.
Probab=25.06 E-value=2.5e+02 Score=24.44 Aligned_cols=90 Identities=11% Similarity=-0.045 Sum_probs=54.1
Q ss_pred CceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeEeccCCCCCHHHHHHH
Q 019348 42 SKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQ 121 (342)
Q Consensus 42 ~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~ 121 (342)
.++.+-..+.+-+-|+++- .+..+...+.+.| ++.|... ..+-.-....++|...|.-+..+-|...+......
T Consensus 38 ~~i~~K~E~~nptGS~K~R--~a~~~l~~a~~~g---~~~vv~~-SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~ 111 (324)
T cd01563 38 KNLYVKDEGLNPTGSFKDR--GMTVAVSKAKELG---VKAVACA-STGNTSASLAAYAARAGIKCVVFLPAGKALGKLAQ 111 (324)
T ss_pred CceEEEecCCCCcccHHHh--hHHHHHHHHHHcC---CCEEEEe-CCCHHHHHHHHHHHHcCCceEEEEeCCCCHHHHHH
Confidence 3566666544445555432 2333333444444 4455444 34445555567888899866665555555667888
Q ss_pred hhhcCceEEEEcccch
Q 019348 122 VKDSNPKLVITVPELW 137 (342)
Q Consensus 122 l~~~~~~~vi~~~~~~ 137 (342)
++..++++++++....
T Consensus 112 l~~~GA~Vi~~~~~~~ 127 (324)
T cd01563 112 ALAYGATVLAVEGNFD 127 (324)
T ss_pred HHHcCCEEEEECCcHH
Confidence 8999999999986543
No 426
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=25.01 E-value=2.6e+02 Score=19.90 Aligned_cols=42 Identities=12% Similarity=0.039 Sum_probs=34.2
Q ss_pred HHHHHHHHhCCeEeccCCCCCHHHHHHHhhhcCceEEEEccc
Q 019348 94 ICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPE 135 (342)
Q Consensus 94 ~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~ 135 (342)
.....+-..|...+.+.+..+.+++...+...+|++|..+-.
T Consensus 18 ~~~~~l~~~G~~v~~l~~~~~~~~~~~~i~~~~pdiV~iS~~ 59 (125)
T cd02065 18 IVAIALRDNGFEVIDLGVDVPPEEIVEAAKEEDADVVGLSAL 59 (125)
T ss_pred HHHHHHHHCCCEEEEcCCCCCHHHHHHHHHHcCCCEEEEecc
Confidence 344456778888898999999999999999999999987643
No 427
>cd07093 ALDH_F8_HMSADH Human aldehyde dehydrogenase family 8 member A1-like. In humans, the aldehyde dehydrogenase family 8 member A1 (ALDH8A1) protein functions to convert 9-cis-retinal to 9-cis-retinoic acid and has a preference for NAD+. Also included in this CD is the 2-hydroxymuconic semialdehyde dehydrogenase (HMSADH) which catalyzes the conversion of 2-hydroxymuconic semialdehyde to 4-oxalocrotonate, a step in the meta cleavage pathway of aromatic hydrocarbons in bacteria. Such HMSADHs seen here are: XylG of the TOL plasmid pWW0 of Pseudomonas putida, TomC of Burkholderia cepacia G4, and AphC of Comamonas testosterone.
Probab=24.98 E-value=4.6e+02 Score=24.22 Aligned_cols=78 Identities=18% Similarity=0.070 Sum_probs=46.1
Q ss_pred CCeEEEEccchhHHHHH-HHHHHHHhhcCCeEEEccC-C---CHHHHHHHHHhcc-----ceEEEec-HHHHHHHHcCCC
Q 019348 234 LDHVVLCVLPMFHVFGL-SVILYDQLQKGNCVVSMGK-F---DIEMALRAIEKYR-----VTVWWVV-PPIILALAKNSL 302 (342)
Q Consensus 234 ~~d~~~~~~p~~~~~g~-~~~~~~~l~~G~~~v~~~~-~---~~~~~~~~i~~~~-----~t~~~~~-P~~l~~l~~~~~ 302 (342)
+--+++...|+.+.... +..+..+|.+|.++++-+. . ....+.+.+.+.+ ++++... ......|..++
T Consensus 117 P~GVv~~i~p~N~P~~~~~~~~~~AL~aGN~VIlkps~~~p~~~~~l~~~l~~aglP~g~v~~v~g~~~~~~~~L~~~~- 195 (455)
T cd07093 117 PVGVAGLITPWNLPLMLLTWKIAPALAFGNTVVLKPSEWTPLTAWLLAELANEAGLPPGVVNVVHGFGPEAGAALVAHP- 195 (455)
T ss_pred eeeEEEEECCCChHHHHHHHHHHHHHhcCCEEEeECCCcCcHHHHHHHHHHHhcCCCccceEEEecCchHHHHHHhcCC-
Confidence 33466777777665443 2357789999999888643 2 3355667776653 3344332 23445565543
Q ss_pred CCccCCCCceEEEeecc
Q 019348 303 VRKFDISSLKLVGSGAA 319 (342)
Q Consensus 303 ~~~~~l~~lr~~~~gG~ 319 (342)
.++.+.++|+
T Consensus 196 -------~i~~V~ftGs 205 (455)
T cd07093 196 -------DVDLISFTGE 205 (455)
T ss_pred -------CccEEEEECC
Confidence 3566666664
No 428
>TIGR02618 tyr_phenol_ly tyrosine phenol-lyase. This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212)
Probab=24.90 E-value=4e+02 Score=24.72 Aligned_cols=69 Identities=16% Similarity=0.159 Sum_probs=45.7
Q ss_pred CcceeHHHHHHHHHHH--------------H-HHHHHcCCCCCCEEEEECCCCChHHHHHHH-HHHhCCeEecc--C---
Q 019348 52 DESLSFSQFKSIVIKV--------------S-HSFRHLGITKKDVVLIFAPNSIHFPICFLG-VIAIGAIASTA--N--- 110 (342)
Q Consensus 52 ~~~~Ty~~l~~~~~~l--------------a-~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA-~~~~G~~~v~l--~--- 110 (342)
+..-||.+|.+.+..+ | +.+...++++||.| + +..++...-+ +...|++++=+ +
T Consensus 68 ag~~s~~~lE~~va~~~G~~~av~v~sGT~Al~ll~~l~l~pGDeV----p-sn~~f~Tt~ahIe~~Gav~vDi~~dea~ 142 (450)
T TIGR02618 68 AGSRNFYHLERTVRELYGFKYVVPTHQGRGAENLLSQIAIKPGDYV----P-GNMYFTTTRYHQEKNGATFVDIIIDEAH 142 (450)
T ss_pred cCCCcHHHHHHHHHHHHCCCeEEEcCCHHHHHHHHHHhCCCCcCEE----C-CceeHHHHHHHHHhCCeEEEeeeccccc
Confidence 3456888888876544 3 23446689999976 3 3566666666 68888876666 2
Q ss_pred ---------CCCCHHHHHHHhhhc
Q 019348 111 ---------PVYTVSELSKQVKDS 125 (342)
Q Consensus 111 ---------~~~~~~~l~~~l~~~ 125 (342)
-+...+.+...++..
T Consensus 143 ~~~~~~p~~GniD~~~Le~aI~~~ 166 (450)
T TIGR02618 143 DAQLNIPFKGNVDLKKLQKLIDEV 166 (450)
T ss_pred ccccCCCCCCCcCHHHHHHHhccc
Confidence 123678888888753
No 429
>KOG0633 consensus Histidinol phosphate aminotransferase [Amino acid transport and metabolism]
Probab=24.82 E-value=70 Score=26.95 Aligned_cols=70 Identities=9% Similarity=0.076 Sum_probs=52.4
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeEeccCCCCC--HHHHHHHhhh-cCceEEEEcc
Q 019348 65 IKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYT--VSELSKQVKD-SNPKLVITVP 134 (342)
Q Consensus 65 ~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~--~~~l~~~l~~-~~~~~vi~~~ 134 (342)
+.+-..+.+.-.-+|.-=.+.||++....+..-++.-++.+=+|++|..+ .+++.++++. +.++++|..+
T Consensus 96 DE~ID~iiR~~c~PGkeKIl~cPPtysMY~v~A~iNd~eVvkvpl~pdF~lnvdai~evl~~ds~iK~~F~tS 168 (375)
T KOG0633|consen 96 DELIDLIIRCVCDPGKEKILDCPPTYSMYVVDAAINDAEVVKVPLNPDFSLNVDAIAEVLELDSKIKCIFLTS 168 (375)
T ss_pred HHHHHHHHhheecCCccceeecCCcceeEEEEeecCCceEEEecCCCCccccHHHHHHHHhccccceEEEEcC
Confidence 33444555555667844556789999999999999999999999999764 4677777765 4888888754
No 430
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=24.71 E-value=3.3e+02 Score=24.66 Aligned_cols=99 Identities=14% Similarity=0.177 Sum_probs=49.4
Q ss_pred eHHHHHHHHHH-HHHHHHHcC----CCCCCEEEEECCCCC--hHHHHHHHHHHh------CCe--EeccCCC--CCHHHH
Q 019348 56 SFSQFKSIVIK-VSHSFRHLG----ITKKDVVLIFAPNSI--HFPICFLGVIAI------GAI--ASTANPV--YTVSEL 118 (342)
Q Consensus 56 Ty~~l~~~~~~-la~~L~~~g----~~~g~~V~i~~~n~~--~~~~~~lA~~~~------G~~--~v~l~~~--~~~~~l 118 (342)
++.++.+.+.. +...+...+ ...+..|+++++++. .-.++-+|.... |.- .+.+|+. ...+++
T Consensus 146 ~~~~v~~~l~~~l~~~i~~~~~~~~~~~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL 225 (388)
T PRK12723 146 DYDKVRDSVIIYIAKTIKCSGSIIDNLKKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQI 225 (388)
T ss_pred CHHHHHHHHHHHHHHHhhccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHH
Confidence 45555555333 444443211 122457888889886 334444554332 333 3444442 234557
Q ss_pred HHHhhhcCceEEEEcc--cchhhhhcc-CCCeEEecCCC
Q 019348 119 SKQVKDSNPKLVITVP--ELWDKVKDL-NLPAVLLGSKD 154 (342)
Q Consensus 119 ~~~l~~~~~~~vi~~~--~~~~~~~~~-~~~~~~~~~~~ 154 (342)
..+.+..+..+..... +....+... ....+++|+.+
T Consensus 226 ~~~a~~lgvpv~~~~~~~~l~~~L~~~~~~DlVLIDTaG 264 (388)
T PRK12723 226 QTYGDIMGIPVKAIESFKDLKEEITQSKDFDLVLVDTIG 264 (388)
T ss_pred HHHhhcCCcceEeeCcHHHHHHHHHHhCCCCEEEEcCCC
Confidence 7777777766554432 122222222 35678888764
No 431
>cd01562 Thr-dehyd Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen. Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly converted into NH4+. The direct deamination is catalyzed by threonine dehydratase, in which pyridoxal phosphate (PLP) is the prosthetic group. Threonine dehydratase is widely distributed in all three major phylogenetic divisions.
Probab=24.70 E-value=3.2e+02 Score=23.44 Aligned_cols=90 Identities=12% Similarity=0.057 Sum_probs=53.3
Q ss_pred CceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeEeccCCCCCHHHHHHH
Q 019348 42 SKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQ 121 (342)
Q Consensus 42 ~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~ 121 (342)
.++.+...+.+-+-|+++-.. ......+.+.| +++.|.. ...+-.-..+.++|...|.-++.+-|...+.+....
T Consensus 32 ~~i~~K~E~~nptgS~Kdr~a--~~~l~~~~~~~--~~~~iv~-~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~ 106 (304)
T cd01562 32 AEVYLKCENLQKTGSFKIRGA--YNKLLSLSEEE--RAKGVVA-ASAGNHAQGVAYAAKLLGIPATIVMPETAPAAKVDA 106 (304)
T ss_pred CeEEEEeccCCCcCCcHHHhH--HHHHHhcCHhh--cCCcEEE-ECCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHH
Confidence 356666554333445443221 11112222323 2334443 455667777778888899866555555556667888
Q ss_pred hhhcCceEEEEcccc
Q 019348 122 VKDSNPKLVITVPEL 136 (342)
Q Consensus 122 l~~~~~~~vi~~~~~ 136 (342)
++..+++++.++.+.
T Consensus 107 l~~~Ga~vi~~~~~~ 121 (304)
T cd01562 107 TRAYGAEVVLYGEDF 121 (304)
T ss_pred HHHcCCEEEEeCCCH
Confidence 999999999998753
No 432
>cd07121 ALDH_EutE Ethanolamine utilization protein EutE-like. Coenzyme A acylating aldehyde dehydrogenase (ACDH), an NAD+ and CoA-dependent acetaldehyde dehydrogenase, acetylating (EC=1.2.1.10), converts acetaldehyde into acetyl-CoA. This CD is limited to such monofunctional enzymes as the Ethanolamine utilization protein, EutE, in Salmonella typhimurium. Mutations in eutE abolish the ability to utilize ethanolamine as a carbon source.
Probab=24.54 E-value=3.6e+02 Score=24.83 Aligned_cols=79 Identities=16% Similarity=0.053 Sum_probs=45.5
Q ss_pred CCeEEEEccchhHHHHHHH-HHHHHhhcCCeEEEccC-CCH---HHHHHHHH----hc--cceEEEec----HHHHHHHH
Q 019348 234 LDHVVLCVLPMFHVFGLSV-ILYDQLQKGNCVVSMGK-FDI---EMALRAIE----KY--RVTVWWVV----PPIILALA 298 (342)
Q Consensus 234 ~~d~~~~~~p~~~~~g~~~-~~~~~l~~G~~~v~~~~-~~~---~~~~~~i~----~~--~~t~~~~~----P~~l~~l~ 298 (342)
+--++....|+.+...... .+..+|.+|.++++=+. ..| ..+.++++ +. ...++..+ ...-+.|+
T Consensus 97 PlGVV~~I~PwN~P~~~~~~~~~~ALaaGN~VVlKpse~tp~t~~~l~~l~~~~~~~aGlP~gvv~~v~g~~~~~~~~L~ 176 (429)
T cd07121 97 PFGVIGAITPSTNPTETIINNSISMLAAGNAVVFNPHPGAKKVSAYAVELINKAIAEAGGPDNLVVTVEEPTIETTNELM 176 (429)
T ss_pred ccceEEEEccCCCchhHHHHHHHHHHHcCCCEEEECCccchhHHHHHHHHHHHHHHHcCCCcceEEEecCCChHHHHHHH
Confidence 4567777788766544433 46789999999998643 332 34444443 22 22333322 23556676
Q ss_pred cCCCCCccCCCCceEEEeeccc
Q 019348 299 KNSLVRKFDISSLKLVGSGAAP 320 (342)
Q Consensus 299 ~~~~~~~~~l~~lr~~~~gG~~ 320 (342)
+++ .++.+.+.|++
T Consensus 177 ~~~--------~v~~I~fTGs~ 190 (429)
T cd07121 177 AHP--------DINLLVVTGGP 190 (429)
T ss_pred cCC--------CccEEEeeCCH
Confidence 654 36667766643
No 433
>cd07145 ALDH_LactADH_F420-Bios Methanocaldococcus jannaschii NAD+-dependent lactaldehyde dehydrogenase-like. NAD+-dependent, lactaldehyde dehydrogenase (EC=1.2.1.22) involved the biosynthesis of coenzyme F(420) in Methanocaldococcus jannaschii through the oxidation of lactaldehyde to lactate and generation of NAPH, and similar sequences are included in this CD.
Probab=24.53 E-value=3.2e+02 Score=25.30 Aligned_cols=80 Identities=14% Similarity=0.043 Sum_probs=47.0
Q ss_pred CCeEEEEccchhHHHHHH-HHHHHHhhcCCeEEEccC-C---CHHHHHHHHHhc--c---ceEEEec-HHHHHHHHcCCC
Q 019348 234 LDHVVLCVLPMFHVFGLS-VILYDQLQKGNCVVSMGK-F---DIEMALRAIEKY--R---VTVWWVV-PPIILALAKNSL 302 (342)
Q Consensus 234 ~~d~~~~~~p~~~~~g~~-~~~~~~l~~G~~~v~~~~-~---~~~~~~~~i~~~--~---~t~~~~~-P~~l~~l~~~~~ 302 (342)
+--+++...|+.+...+. ..+..+|.+|.++++-+. . ....+.+++++. . ++++... ...-+.|++++
T Consensus 123 P~GVv~~I~p~N~P~~~~~~~~~~ALaaGN~VV~Kps~~~p~~~~~l~~~~~~ag~p~g~~~~v~g~~~~~~~~l~~~~- 201 (456)
T cd07145 123 PIGVVGAITPFNFPANLFAHKIAPAIAVGNSVVVKPSSNTPLTAIELAKILEEAGLPPGVINVVTGYGSEVGDEIVTNP- 201 (456)
T ss_pred cceeEEEECCCChHHHHHHHHHHHHHHcCCEEEEECCccchHHHHHHHHHHHHcCCCcccEEEEeCCCchHHHHHhcCC-
Confidence 345777777777765442 357889999999888643 2 335566666664 2 3333332 23445565554
Q ss_pred CCccCCCCceEEEeecccC
Q 019348 303 VRKFDISSLKLVGSGAAPL 321 (342)
Q Consensus 303 ~~~~~l~~lr~~~~gG~~l 321 (342)
.++.+.++|++-
T Consensus 202 -------~v~~V~fTGs~~ 213 (456)
T cd07145 202 -------KVNMISFTGSTA 213 (456)
T ss_pred -------CCCEEEEECCHH
Confidence 466666666443
No 434
>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.
Probab=24.46 E-value=4e+02 Score=23.31 Aligned_cols=12 Identities=17% Similarity=0.185 Sum_probs=5.5
Q ss_pred hhhHhHHHHHHH
Q 019348 209 GVILTHKNFIAA 220 (342)
Q Consensus 209 ~v~~t~~~l~~~ 220 (342)
|.++..+.+...
T Consensus 195 G~l~~~~~~~~~ 206 (356)
T cd06451 195 GPIAFSERALER 206 (356)
T ss_pred ceeEECHHHHHH
Confidence 444444444433
No 435
>PRK11241 gabD succinate-semialdehyde dehydrogenase I; Provisional
Probab=24.45 E-value=3.8e+02 Score=25.07 Aligned_cols=90 Identities=14% Similarity=0.006 Sum_probs=52.2
Q ss_pred CCeEEEEccchhHHHHHHH-HHHHHhhcCCeEEEccC-CCH---HHHHHHHHhcc-----ceEEEec-HHHHHHHHcCCC
Q 019348 234 LDHVVLCVLPMFHVFGLSV-ILYDQLQKGNCVVSMGK-FDI---EMALRAIEKYR-----VTVWWVV-PPIILALAKNSL 302 (342)
Q Consensus 234 ~~d~~~~~~p~~~~~g~~~-~~~~~l~~G~~~v~~~~-~~~---~~~~~~i~~~~-----~t~~~~~-P~~l~~l~~~~~ 302 (342)
+--++....|+.+...+.. .+..+|.+|.++++=+. ..| ..+.+++.+.+ ++++... ...-..|+.++
T Consensus 146 P~GVv~~I~PwN~P~~~~~~~~~~ALaaGN~VVlKPs~~tp~~~~~l~~~~~~aglP~gvv~vv~g~~~~~~~~l~~~~- 224 (482)
T PRK11241 146 PIGVTAAITPWNFPAAMITRKAGPALAAGCTMVLKPASQTPFSALALAELAIRAGIPAGVFNVVTGSAGAVGGELTSNP- 224 (482)
T ss_pred eceEEEEECCCcChHHHHHHHHHHHHHhCCEEEEECCCCChHHHHHHHHHHHHcCCCcccEEEEecCCchhHHHHhcCC-
Confidence 3457888888888766633 37788999999888643 333 44556665542 3333332 23456666654
Q ss_pred CCccCCCCceEEEeecccCC-HHHHHHHHH
Q 019348 303 VRKFDISSLKLVGSGAAPLG-KELMEDCQK 331 (342)
Q Consensus 303 ~~~~~l~~lr~~~~gG~~l~-~~~~~~~~~ 331 (342)
.++.+.++|+.-. ..+.+...+
T Consensus 225 -------~v~~v~FTGS~~~G~~i~~~aa~ 247 (482)
T PRK11241 225 -------LVRKLSFTGSTEIGRQLMEQCAK 247 (482)
T ss_pred -------CCCEEEEECcHHHHHHHHHHHHh
Confidence 3556666664332 333444433
No 436
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=24.45 E-value=85 Score=16.10 Aligned_cols=18 Identities=33% Similarity=0.676 Sum_probs=13.6
Q ss_pred CCCCcceeHHHHHHHHHH
Q 019348 49 ADSDESLSFSQFKSIVIK 66 (342)
Q Consensus 49 ~~~~~~~Ty~~l~~~~~~ 66 (342)
.+.+..+++.|+.+...+
T Consensus 11 ~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 11 KDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp TTSSSEEEHHHHHHHHHH
T ss_pred CCCCCcCCHHHHHHHHHh
Confidence 344689999999887654
No 437
>PF12646 DUF3783: Domain of unknown function (DUF3783); InterPro: IPR016621 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=24.43 E-value=1.8e+02 Score=17.91 Aligned_cols=33 Identities=18% Similarity=0.297 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHH
Q 019348 63 IVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICF 96 (342)
Q Consensus 63 ~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~ 96 (342)
+..++-..+++.|+ +...-|++-|++..|-+..
T Consensus 13 el~~~l~~~r~~~~-~~~~kAvlT~tN~~Wt~~~ 45 (58)
T PF12646_consen 13 ELDKFLDALRKAGI-PIPLKAVLTPTNINWTLKD 45 (58)
T ss_pred HHHHHHHHHHHcCC-CcceEEEECCCcccCcHHH
Confidence 44555566677777 6666777777777665543
No 438
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=24.43 E-value=89 Score=24.63 Aligned_cols=38 Identities=24% Similarity=0.315 Sum_probs=22.7
Q ss_pred cceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCCHH
Q 019348 283 RVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKE 324 (342)
Q Consensus 283 ~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~ 324 (342)
++-.+...|.+++.+.+.. ....+.++.+... .+.+++
T Consensus 50 ~vfllG~~~~v~~~~~~~l---~~~yP~l~i~g~~-g~f~~~ 87 (177)
T TIGR00696 50 PIFLYGGKPDVLQQLKVKL---IKEYPKLKIVGAF-GPLEPE 87 (177)
T ss_pred eEEEECCCHHHHHHHHHHH---HHHCCCCEEEEEC-CCCChH
Confidence 5666777788877776654 2235667766553 344443
No 439
>cd07088 ALDH_LactADH-AldA Escherichia coli lactaldehyde dehydrogenase AldA-like. Lactaldehyde dehydrogenase from Escherichia coli (AldA, LactADH, EC=1.2.1.22), an NAD(+)-dependent enzyme involved in the metabolism of L-fucose and L-rhamnose, and other similar sequences are present in this CD.
Probab=24.40 E-value=4.2e+02 Score=24.58 Aligned_cols=90 Identities=17% Similarity=0.098 Sum_probs=50.9
Q ss_pred CCeEEEEccchhHHHHH-HHHHHHHhhcCCeEEEccC-C---CHHHHHHHHHhcc-----ceEEEecH-HHHHHHHcCCC
Q 019348 234 LDHVVLCVLPMFHVFGL-SVILYDQLQKGNCVVSMGK-F---DIEMALRAIEKYR-----VTVWWVVP-PIILALAKNSL 302 (342)
Q Consensus 234 ~~d~~~~~~p~~~~~g~-~~~~~~~l~~G~~~v~~~~-~---~~~~~~~~i~~~~-----~t~~~~~P-~~l~~l~~~~~ 302 (342)
+--++++..|..+.... +..+..+|.+|.++++-+. . ....+.+++++.+ ++++.... ..-..|..++
T Consensus 133 P~Gvv~~I~p~N~P~~~~~~~~~~AL~aGN~VVlKps~~~p~~~~~l~~~~~~aglP~gvv~~v~g~~~~~~~~l~~~~- 211 (468)
T cd07088 133 PIGVVAGILPWNFPFFLIARKLAPALVTGNTIVIKPSEETPLNALEFAELVDEAGLPAGVLNIVTGRGSVVGDALVAHP- 211 (468)
T ss_pred cceeEEEEccCchHHHHHHHHHHHHHHcCCEEEEECCCcchHHHHHHHHHHHHcCcCccceEEEecCchHHHHHHhcCC-
Confidence 34577777887766544 2468899999999998643 2 3355666666642 23333322 2345555443
Q ss_pred CCccCCCCceEEEeecccCC-HHHHHHHHH
Q 019348 303 VRKFDISSLKLVGSGAAPLG-KELMEDCQK 331 (342)
Q Consensus 303 ~~~~~l~~lr~~~~gG~~l~-~~~~~~~~~ 331 (342)
.++.+.+.|+.-- ..+.+...+
T Consensus 212 -------~v~~V~ftGs~~~g~~i~~~aa~ 234 (468)
T cd07088 212 -------KVGMISLTGSTEAGQKIMEAAAE 234 (468)
T ss_pred -------CCCEEEEECcHHHHHHHHHHHHh
Confidence 4666666664322 344444433
No 440
>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=24.37 E-value=1.9e+02 Score=26.17 Aligned_cols=53 Identities=21% Similarity=0.227 Sum_probs=29.8
Q ss_pred CCCCEEEEECCCCChHHHHHHHHHHhCCeEeccCC-------CCCHHHHHHHhhhcCceEEEEc
Q 019348 77 TKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANP-------VYTVSELSKQVKDSNPKLVITV 133 (342)
Q Consensus 77 ~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~-------~~~~~~l~~~l~~~~~~~vi~~ 133 (342)
.+||.|++..|. |....-.+..+|+.+++++. ....+++...+.. +.++++..
T Consensus 111 ~pGDeVlip~P~---Y~~y~~~~~~~gg~~v~v~l~~~~~~f~~d~~~l~~~i~~-ktk~i~ln 170 (393)
T COG0436 111 NPGDEVLIPDPG---YPSYEAAVKLAGGKPVPVPLDEEENGFKPDLEDLEAAITP-KTKAIILN 170 (393)
T ss_pred CCCCEEEEeCCC---CcCHHHHHHhcCCEEEEEeCCcCccCCcCCHHHHHhhcCc-cceEEEEe
Confidence 567776665443 33333445566666555542 1235667676666 67777664
No 441
>PLN02893 Cellulose synthase-like protein
Probab=24.26 E-value=1.9e+02 Score=28.68 Aligned_cols=77 Identities=16% Similarity=0.155 Sum_probs=52.8
Q ss_pred CceeecCCCCCCCCCCCCCCHHHHHhhhcccCC-CceEEE-eCCCCcceeHHHHHHHHHHHHHHH---HHcCCCCCCEEE
Q 019348 9 DGIYRSLRPPLVLPSDPSFSMVHFLFRNSASYS-SKLALI-DADSDESLSFSQFKSIVIKVSHSF---RHLGITKKDVVL 83 (342)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~p-~~~a~~-~~~~~~~~Ty~~l~~~~~~la~~L---~~~g~~~g~~V~ 83 (342)
-+++...-.|...|.- .++...+.--|-++| ||.+.. .+|.+..+||..|.+.++--..++ +++++++...-+
T Consensus 103 vDvfv~TaDP~~Epp~--~~~ntvLSilA~dyp~~kls~YvSDDGgs~lt~~al~Eaa~FA~~WvPFCrk~~ie~R~P~~ 180 (734)
T PLN02893 103 LDVFICTADPYKEPPM--GVVNTALSVMAYDYPTEKLSVYVSDDGGSKLTLFAFMEAAKFATHWLPFCKKNKIVERCPEA 180 (734)
T ss_pred ceeeeccCCcccCchH--HHHHHHHHHHhhccCccceEEEEecCCccHHHHHHHHHHHHHHHhhcccccccCCCcCCHHH
Confidence 3455555555666654 566677777777888 777754 445579999999998877666666 788887665444
Q ss_pred EECC
Q 019348 84 IFAP 87 (342)
Q Consensus 84 i~~~ 87 (342)
....
T Consensus 181 YF~~ 184 (734)
T PLN02893 181 YFSS 184 (734)
T ss_pred Hhcc
Confidence 4433
No 442
>PRK11121 nrdG anaerobic ribonucleotide reductase-activating protein; Provisional
Probab=24.26 E-value=82 Score=24.12 Aligned_cols=10 Identities=50% Similarity=0.594 Sum_probs=7.5
Q ss_pred EEEeecccCC
Q 019348 313 LVGSGAAPLG 322 (342)
Q Consensus 313 ~~~~gG~~l~ 322 (342)
..++||||+-
T Consensus 69 vt~sGGEPl~ 78 (154)
T PRK11121 69 LSLSGGDPLH 78 (154)
T ss_pred EEEECCCccc
Confidence 4668888885
No 443
>PRK07050 cystathionine beta-lyase; Provisional
Probab=24.23 E-value=4.8e+02 Score=23.62 Aligned_cols=9 Identities=44% Similarity=0.298 Sum_probs=4.5
Q ss_pred CCCCEEEEE
Q 019348 77 TKKDVVLIF 85 (342)
Q Consensus 77 ~~g~~V~i~ 85 (342)
++||.|++.
T Consensus 102 ~~GD~Vl~~ 110 (394)
T PRK07050 102 KAGDDVLIP 110 (394)
T ss_pred CCCCEEEEe
Confidence 455555443
No 444
>cd07118 ALDH_SNDH Gluconobacter oxydans L-sorbosone dehydrogenase-like. Included in this CD is the L-sorbosone dehydrogenase (SNDH) from Gluconobacter oxydans UV10. In G. oxydans, D-sorbitol is converted to 2-keto-L-gulonate (a precursor of L-ascorbic acid) in sequential oxidation steps catalyzed by a FAD-dependent, L-sorbose dehydrogenase and an NAD(P)+-dependent, L-sorbosone dehydrogenase.
Probab=24.23 E-value=3.8e+02 Score=24.82 Aligned_cols=78 Identities=19% Similarity=0.097 Sum_probs=47.0
Q ss_pred CCeEEEEccchhHHHHHH-HHHHHHhhcCCeEEEccC-C---CHHHHHHHHHhcc--ceEEEecH----HHHHHHHcCCC
Q 019348 234 LDHVVLCVLPMFHVFGLS-VILYDQLQKGNCVVSMGK-F---DIEMALRAIEKYR--VTVWWVVP----PIILALAKNSL 302 (342)
Q Consensus 234 ~~d~~~~~~p~~~~~g~~-~~~~~~l~~G~~~v~~~~-~---~~~~~~~~i~~~~--~t~~~~~P----~~l~~l~~~~~ 302 (342)
+--++....|+.+...+. ..+..+|.+|.++++-+. . ....+.+++++.+ ...+.+++ ..-..|..++
T Consensus 119 P~GvV~~I~p~N~P~~~~~~~i~~ALaaGN~Vi~Kps~~~p~~~~~l~~~~~~aG~P~g~~~~v~g~~~~~~~~L~~~~- 197 (454)
T cd07118 119 PIGVVGIITPWNFPFLILSQKLPFALAAGCTVVVKPSEFTSGTTLMLAELLIEAGLPAGVVNIVTGYGATVGQAMTEHP- 197 (454)
T ss_pred cceEEEEECCCCcHHHHHHHHHHHHHhcCCEEEEECCCCCcHHHHHHHHHHHhcCCCccceEEEecCCchHHHHHhcCC-
Confidence 445788888887766553 357799999999988643 2 3455666677653 22233322 2445565554
Q ss_pred CCccCCCCceEEEeecc
Q 019348 303 VRKFDISSLKLVGSGAA 319 (342)
Q Consensus 303 ~~~~~l~~lr~~~~gG~ 319 (342)
.++.+.++|+
T Consensus 198 -------~v~~v~ftGs 207 (454)
T cd07118 198 -------DVDMVSFTGS 207 (454)
T ss_pred -------CCCEEEEECc
Confidence 3556666663
No 445
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=24.16 E-value=4.7e+02 Score=22.64 Aligned_cols=76 Identities=13% Similarity=0.017 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHc-CCCCCCEEEEECCCCChHH-HH---HHHHHHhCCeE--eccCCCCCHHHHHHHhhhc----C
Q 019348 58 SQFKSIVIKVSHSFRHL-GITKKDVVLIFAPNSIHFP-IC---FLGVIAIGAIA--STANPVYTVSELSKQVKDS----N 126 (342)
Q Consensus 58 ~~l~~~~~~la~~L~~~-g~~~g~~V~i~~~n~~~~~-~~---~lA~~~~G~~~--v~l~~~~~~~~l~~~l~~~----~ 126 (342)
+++.+..++-...|++. |..++ -+.|...+.+... +. .=+|-..|..+ .-++...+.+++...++.. .
T Consensus 11 ~~i~~~l~~~v~~l~~~~g~~P~-LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~ 89 (293)
T PRK14185 11 AQIKQEIAAEVAEIVAKGGKRPH-LAAILVGHDGGSETYVANKVKACEECGFKSSLIRYESDVTEEELLAKVRELNQDDD 89 (293)
T ss_pred HHHHHHHHHHHHHHHhccCCCCe-EEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCC
Confidence 44555555555556555 77664 3344444444333 22 34888999888 5566777788888777666 3
Q ss_pred ceEEEEcc
Q 019348 127 PKLVITVP 134 (342)
Q Consensus 127 ~~~vi~~~ 134 (342)
.+-+++.-
T Consensus 90 V~GIlvql 97 (293)
T PRK14185 90 VDGFIVQL 97 (293)
T ss_pred CCeEEEec
Confidence 44566543
No 446
>cd07143 ALDH_AldA_AN0554 Aspergillus nidulans aldehyde dehydrogenase, AldA (AN0554)-like. NAD(P)+-dependent aldehyde dehydrogenase (AldA) of Aspergillus nidulans (locus AN0554), and other similar sequences, are present in this CD.
Probab=24.11 E-value=4.2e+02 Score=24.81 Aligned_cols=80 Identities=14% Similarity=0.038 Sum_probs=48.6
Q ss_pred CCeEEEEccchhHHHHH-HHHHHHHhhcCCeEEEccC-C---CHHHHHHHHHhcc-----ceEEEec-HHHHHHHHcCCC
Q 019348 234 LDHVVLCVLPMFHVFGL-SVILYDQLQKGNCVVSMGK-F---DIEMALRAIEKYR-----VTVWWVV-PPIILALAKNSL 302 (342)
Q Consensus 234 ~~d~~~~~~p~~~~~g~-~~~~~~~l~~G~~~v~~~~-~---~~~~~~~~i~~~~-----~t~~~~~-P~~l~~l~~~~~ 302 (342)
+--++....|+.+...+ +..+..+|.+|.++++=+. . ....+.+++.+.+ ++++... ...-..|..++
T Consensus 144 P~GVv~~I~P~N~P~~~~~~~~~~ALaaGN~VvlKps~~~p~~~~~l~~~l~~aGlP~g~v~~v~g~~~~~~~~L~~~~- 222 (481)
T cd07143 144 PIGVCGQIIPWNFPLLMCAWKIAPALAAGNTIVLKPSELTPLSALYMTKLIPEAGFPPGVINVVSGYGRTCGNAISSHM- 222 (481)
T ss_pred cceeEEEECCCcChHHHHHHHHHHHHHcCCEEEEeCCCCCcHHHHHHHHHHHhcCcCcccEEEEeCCchhHHHHHhcCC-
Confidence 44577777888776555 2357889999999988643 2 3355666666642 3333332 23455666554
Q ss_pred CCccCCCCceEEEeecccC
Q 019348 303 VRKFDISSLKLVGSGAAPL 321 (342)
Q Consensus 303 ~~~~~l~~lr~~~~gG~~l 321 (342)
.++.+.++|+.-
T Consensus 223 -------~vd~V~fTGs~~ 234 (481)
T cd07143 223 -------DIDKVAFTGSTL 234 (481)
T ss_pred -------CCCEEEEECchH
Confidence 466677777543
No 447
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=24.07 E-value=2e+02 Score=23.20 Aligned_cols=77 Identities=12% Similarity=0.173 Sum_probs=42.2
Q ss_pred HHHHHhhcCCeEEEccCCCHHHHHHHHHhccceEE--EecHHHHHHHHcCCCC------------------CccCCCCce
Q 019348 253 ILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVW--WVVPPIILALAKNSLV------------------RKFDISSLK 312 (342)
Q Consensus 253 ~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~--~~~P~~l~~l~~~~~~------------------~~~~l~~lr 312 (342)
..-.++..|+..++.+.++ .++++..+++++-.+ .+||+-.....+.... -...++.++
T Consensus 72 ~a~~a~~aGA~FivSP~~~-~~v~~~~~~~~i~~iPG~~TptEi~~A~~~G~~~vK~FPA~~~GG~~~ik~l~~p~p~~~ 150 (196)
T PF01081_consen 72 QAEAAIAAGAQFIVSPGFD-PEVIEYAREYGIPYIPGVMTPTEIMQALEAGADIVKLFPAGALGGPSYIKALRGPFPDLP 150 (196)
T ss_dssp HHHHHHHHT-SEEEESS---HHHHHHHHHHTSEEEEEESSHHHHHHHHHTT-SEEEETTTTTTTHHHHHHHHHTTTTT-E
T ss_pred HHHHHHHcCCCEEECCCCC-HHHHHHHHHcCCcccCCcCCHHHHHHHHHCCCCEEEEecchhcCcHHHHHHHhccCCCCe
Confidence 3456677788877777665 445566666666665 3556655544443310 012367788
Q ss_pred EEEeecccCCHHHHHHHHHh
Q 019348 313 LVGSGAAPLGKELMEDCQKN 332 (342)
Q Consensus 313 ~~~~gG~~l~~~~~~~~~~~ 332 (342)
++-+|| ++.+-+..|.+.
T Consensus 151 ~~ptGG--V~~~N~~~~l~a 168 (196)
T PF01081_consen 151 FMPTGG--VNPDNLAEYLKA 168 (196)
T ss_dssp EEEBSS----TTTHHHHHTS
T ss_pred EEEcCC--CCHHHHHHHHhC
Confidence 887887 666666666654
No 448
>PRK11809 putA trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed
Probab=24.07 E-value=2.9e+02 Score=29.73 Aligned_cols=81 Identities=17% Similarity=0.138 Sum_probs=52.4
Q ss_pred CCeEEEEccchhHHHHHHH-HHHHHhhcCCeEEEccC-CCH---HHHHHHHHhc--cceEEEecH----HHHHHHHcCCC
Q 019348 234 LDHVVLCVLPMFHVFGLSV-ILYDQLQKGNCVVSMGK-FDI---EMALRAIEKY--RVTVWWVVP----PIILALAKNSL 302 (342)
Q Consensus 234 ~~d~~~~~~p~~~~~g~~~-~~~~~l~~G~~~v~~~~-~~~---~~~~~~i~~~--~~t~~~~~P----~~l~~l~~~~~ 302 (342)
+-.++++..|+.+...+.. .+..+|.+|.++++=+. ..| ..+.+++.+. ...++.++| .+-..|..++
T Consensus 768 PlGVV~~IsPWNFPlai~~g~iaaALaAGN~VV~KPseqTpl~a~~lv~ll~eAGlP~gvlqlv~G~g~~vg~~Lv~~p- 846 (1318)
T PRK11809 768 PLGPVVCISPWNFPLAIFTGQVAAALAAGNSVLAKPAEQTPLIAAQAVRILLEAGVPAGVVQLLPGRGETVGAALVADA- 846 (1318)
T ss_pred cccEEEEECCCccHHHHHHHHHHHHHHcCCeEEEeCCCCcHHHHHHHHHHHHHhCcCcCeEEEeeCCcHHHHHHHhcCC-
Confidence 5578999999988766644 47799999999988643 333 4556666664 334455554 2456666655
Q ss_pred CCccCCCCceEEEeecccCC
Q 019348 303 VRKFDISSLKLVGSGAAPLG 322 (342)
Q Consensus 303 ~~~~~l~~lr~~~~gG~~l~ 322 (342)
.++.+.+.|+.-.
T Consensus 847 -------~V~~V~FTGSt~t 859 (1318)
T PRK11809 847 -------RVRGVMFTGSTEV 859 (1318)
T ss_pred -------CcCEEEEeCCHHH
Confidence 4666777664443
No 449
>PRK09192 acyl-CoA synthetase; Validated
Probab=24.05 E-value=6e+02 Score=24.20 Aligned_cols=87 Identities=8% Similarity=-0.071 Sum_probs=58.6
Q ss_pred hhHhHHHHHHHhhhhhhhh-ccccCCCeEEEEccchhHHHHHHHHHHHHhhcCCeEEEccC-C-------CHHHHHHHHH
Q 019348 210 VILTHKNFIAASLMISAHQ-ELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGK-F-------DIEMALRAIE 280 (342)
Q Consensus 210 v~~t~~~l~~~~~~~~~~~-~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~-~-------~~~~~~~~i~ 280 (342)
-.+|...+...+..+.... ..+..++|++....+..- .++..++.++..|+..+..+. + ..+++...++
T Consensus 48 ~~~Ty~eL~~~~~~~a~~L~~~gi~~gd~V~l~~~n~~--~~~~~~lA~~~~G~~~v~i~~~~~~~~~~~~~~~l~~~i~ 125 (579)
T PRK09192 48 EALPYQTLRARAEAGARRLLALGLKPGDRVALIAETDG--DFVEAFFACQYAGLVPVPLPLPMGFGGRESYIAQLRGMLA 125 (579)
T ss_pred EEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCch--hHHHHHHHHHHcCCeeEeccCCcccccchHHHHHHHHHHH
Confidence 3467777766544432221 234567888888777744 333678899999998887742 1 1578889999
Q ss_pred hccceEEEecHHHHHHHH
Q 019348 281 KYRVTVWWVVPPIILALA 298 (342)
Q Consensus 281 ~~~~t~~~~~P~~l~~l~ 298 (342)
+.++..++........+.
T Consensus 126 ~~~~~~il~~~~~~~~~~ 143 (579)
T PRK09192 126 SAQPAAIITPDELLPWVN 143 (579)
T ss_pred hcCCCEEEeChHHHHHHH
Confidence 999999988876554433
No 450
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=23.95 E-value=2.6e+02 Score=19.52 Aligned_cols=48 Identities=10% Similarity=0.103 Sum_probs=33.1
Q ss_pred cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeEe
Q 019348 53 ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIAS 107 (342)
Q Consensus 53 ~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v 107 (342)
..+.+.++.+. +.+.+..++..|.++|.++.....+...+...|..-+
T Consensus 39 inip~~~l~~~-------l~~~~~~~~~~vvlyC~~G~rS~~aa~~L~~~G~~~v 86 (101)
T TIGR02981 39 INIPLKEIKEH-------IATAVPDKNDTVKLYCNAGRQSGMAKDILLDMGYTHA 86 (101)
T ss_pred EECCHHHHHHH-------HHHhCCCCCCeEEEEeCCCHHHHHHHHHHHHcCCCeE
Confidence 45666665442 3333344567898999999888888888888887543
No 451
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=23.88 E-value=1.6e+02 Score=28.49 Aligned_cols=41 Identities=22% Similarity=0.272 Sum_probs=35.6
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCe
Q 019348 65 IKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAI 105 (342)
Q Consensus 65 ~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~ 105 (342)
..+...+.+.|+.+++.|.+.|..+...-.+++++-.+|.-
T Consensus 209 ~el~~~~~~~Gi~~~~~VVvYC~sG~rAa~~~~~L~~lG~~ 249 (610)
T PRK09629 209 QDMPEILRDLGITPDKEVITHCQTHHRSGFTYLVAKALGYP 249 (610)
T ss_pred HHHHHHHHHcCCCCCCCEEEECCCChHHHHHHHHHHHcCCC
Confidence 45777788889999999999999998888889999999975
No 452
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=23.86 E-value=4.9e+02 Score=22.66 Aligned_cols=76 Identities=9% Similarity=0.078 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHc---CCCCCCEEEEEC-CCC-ChHHHHHHHHHHhCCeEeccCCCCC-------HHHHHHHhhh
Q 019348 57 FSQFKSIVIKVSHSFRHL---GITKKDVVLIFA-PNS-IHFPICFLGVIAIGAIASTANPVYT-------VSELSKQVKD 124 (342)
Q Consensus 57 y~~l~~~~~~la~~L~~~---g~~~g~~V~i~~-~n~-~~~~~~~lA~~~~G~~~v~l~~~~~-------~~~l~~~l~~ 124 (342)
...+.+.+..+-....+. ..-.|..|+.++ .+| ..-.....|+.++|+.++.+++..+ ..+....+..
T Consensus 18 l~~ll~~A~~~k~~~~~~~~~~~L~gk~v~~lF~e~STRTR~SFe~A~~~LGg~~i~l~~~~ss~~kgEsl~Dt~~~l~~ 97 (304)
T PRK00779 18 LEELLDLAAELKKKRKAGEPHPPLKGKTLAMIFEKPSTRTRVSFEVGMAQLGGHAIFLSPRDTQLGRGEPIEDTARVLSR 97 (304)
T ss_pred HHHHHHHHHHHHhHhhcCCccccCCCCEEEEEecCCCchHHHHHHHHHHHcCCcEEEECcccccCCCCcCHHHHHHHHHH
Confidence 344445555554433221 123466666544 444 5667788999999999999987653 4556667777
Q ss_pred cCceEEEEc
Q 019348 125 SNPKLVITV 133 (342)
Q Consensus 125 ~~~~~vi~~ 133 (342)
. ++++++-
T Consensus 98 ~-~D~iv~R 105 (304)
T PRK00779 98 Y-VDAIMIR 105 (304)
T ss_pred h-CCEEEEc
Confidence 7 7887764
No 453
>cd07126 ALDH_F12_P5CDH Delta(1)-pyrroline-5-carboxylate dehydrogenase, ALDH family 12. Delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH, EC=1.5.1.12), family 12: a proline catabolic enzyme of the aldehyde dehydrogenase (ALDH) protein superfamily. P5CDH is a mitochondrial enzyme involved in proline degradation and catalyzes the NAD + -dependent conversion of P5C to glutamate. The P5CDH, ALDH12A1 gene, in Arabidopsis, has been identified as an osmotic-stress-inducible ALDH gene. This CD contains both Viridiplantae and Alveolata P5CDH sequences.
Probab=23.64 E-value=4.3e+02 Score=24.83 Aligned_cols=49 Identities=18% Similarity=0.110 Sum_probs=33.9
Q ss_pred CCeEEEEccchhHHHHHHHH-HHHHhhcCCeEEEccC-CC---HHHHHHHHHhc
Q 019348 234 LDHVVLCVLPMFHVFGLSVI-LYDQLQKGNCVVSMGK-FD---IEMALRAIEKY 282 (342)
Q Consensus 234 ~~d~~~~~~p~~~~~g~~~~-~~~~l~~G~~~v~~~~-~~---~~~~~~~i~~~ 282 (342)
+--+++...|+.+...+... +..+|.+|.++++=++ .. ...+.+.+.+.
T Consensus 142 P~GVV~~I~PwNfP~~l~~~~ia~ALaaGN~VVlKPSe~tp~~~~~l~~~~~~a 195 (489)
T cd07126 142 PYGPVAIITPFNFPLEIPALQLMGALFMGNKPLLKVDSKVSVVMEQFLRLLHLC 195 (489)
T ss_pred cceEEEEECCCchHHHHHHHHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 45677888888887765444 7789999999998543 33 34555666554
No 454
>cd07114 ALDH_DhaS Uncharacterized Candidatus pelagibacter aldehyde dehydrogenase, DhaS-like. Uncharacterized aldehyde dehydrogenase from Candidatus pelagibacter (DhaS) and other related sequences are present in this CD.
Probab=23.59 E-value=3.2e+02 Score=25.27 Aligned_cols=76 Identities=21% Similarity=0.047 Sum_probs=44.0
Q ss_pred CeEEEEccchhHHHHHH-HHHHHHhhcCCeEEEccC-C---CHHHHHHHHHhcc--ceEEEecH----HHHHHHHcCCCC
Q 019348 235 DHVVLCVLPMFHVFGLS-VILYDQLQKGNCVVSMGK-F---DIEMALRAIEKYR--VTVWWVVP----PIILALAKNSLV 303 (342)
Q Consensus 235 ~d~~~~~~p~~~~~g~~-~~~~~~l~~G~~~v~~~~-~---~~~~~~~~i~~~~--~t~~~~~P----~~l~~l~~~~~~ 303 (342)
-.+++...|+.+..... ..+..+|.+|.++++-+. . ....+.+++.+.+ ...+.+++ .....|..++
T Consensus 120 ~Gvv~~I~p~N~P~~~~~~~~~~AL~aGN~Vilkps~~~p~~~~~l~~~l~~aglP~~vv~~v~g~~~~~~~~l~~~~-- 197 (457)
T cd07114 120 LGVVAAITPWNSPLLLLAKKLAPALAAGNTVVLKPSEHTPASTLELAKLAEEAGFPPGVVNVVTGFGPETGEALVEHP-- 197 (457)
T ss_pred ceEEEEECCCccHHHHHHHHHHHHHhcCCeEEeECCccchHHHHHHHHHHHHcCcCCCcEEEEeCCCchHHHHHhcCC--
Confidence 35677777776655442 347789999999888643 3 2355566666542 23333332 2455565554
Q ss_pred CccCCCCceEEEeec
Q 019348 304 RKFDISSLKLVGSGA 318 (342)
Q Consensus 304 ~~~~l~~lr~~~~gG 318 (342)
.++.+.+.|
T Consensus 198 ------~i~~V~ftG 206 (457)
T cd07114 198 ------LVAKIAFTG 206 (457)
T ss_pred ------CCCEEEEEC
Confidence 355566555
No 455
>PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional
Probab=23.58 E-value=5.4e+02 Score=23.46 Aligned_cols=79 Identities=13% Similarity=-0.016 Sum_probs=54.8
Q ss_pred hHhHHHHHHHhhhhhhhh-ccccCCCeEEEEccchhHHHHHHHHHHHHhhcCCeEEEcc-CCCHHHHHHHHHhccceEEE
Q 019348 211 ILTHKNFIAASLMISAHQ-ELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMG-KFDIEMALRAIEKYRVTVWW 288 (342)
Q Consensus 211 ~~t~~~l~~~~~~~~~~~-~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~ 288 (342)
.+|+..+...+..+.... ..+..++|++....+-... +...++.++..|+..+... ...++.+-..+++.++..+.
T Consensus 28 ~~ty~el~~~~~~~a~~L~~~g~~~~~~v~l~~~~~~~--~~~~~la~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~i 105 (458)
T PRK09029 28 VLTWQQLCARIDQLAAGFAQQGVVEGSGVALRGKNSPE--TLLAYLALLQCGARVLPLNPQLPQPLLEELLPSLTLDFAL 105 (458)
T ss_pred ceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHH--HHHHHHHHHHcCCEEeecCCCCCHHHHHHHHHhcCCCEEE
Confidence 468888877655543222 2235677888777665443 2266789999999988874 45678888888998988887
Q ss_pred ecH
Q 019348 289 VVP 291 (342)
Q Consensus 289 ~~P 291 (342)
...
T Consensus 106 ~~~ 108 (458)
T PRK09029 106 VLE 108 (458)
T ss_pred EcC
Confidence 654
No 456
>PF02073 Peptidase_M29: Thermophilic metalloprotease (M29); InterPro: IPR000787 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M29 (aminopeptidase T family, clan M-). The protein fold of the peptidase domain and the active site residues are not known for any members of the thermophilic metallo-aminopeptidases family.; GO: 0004177 aminopeptidase activity, 0006508 proteolysis; PDB: 2AYI_D 1ZJC_A.
Probab=23.58 E-value=1.6e+02 Score=26.82 Aligned_cols=50 Identities=18% Similarity=0.136 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHc--CCCCCCEEEEECCCCC-hHH-HHHHHHHHhCCeEecc
Q 019348 60 FKSIVIKVSHSFRHL--GITKKDVVLIFAPNSI-HFP-ICFLGVIAIGAIASTA 109 (342)
Q Consensus 60 l~~~~~~la~~L~~~--g~~~g~~V~i~~~n~~-~~~-~~~lA~~~~G~~~v~l 109 (342)
+..+.+++|..|.+. ++++|+.|.|-.+... +++ .+.-.+.++|+-.+.+
T Consensus 3 ~~~~l~kyA~llV~~glnvq~Gq~v~I~~~~~~~~l~r~l~~~ay~aGA~~v~v 56 (398)
T PF02073_consen 3 FDERLEKYAELLVKYGLNVQPGQKVLIRAPVEAAPLARALVEEAYEAGAKYVIV 56 (398)
T ss_dssp HHHHHHHHHHHHHHTTT---TT-EEEEEEETT-HHHHHHHHHHHHHTT-SCEEE
T ss_pred chHHHHHHHHHHHHhccCCCCCCEEEEEecccHHHHHHHHHHHHHHcCCCceEE
Confidence 467888999999765 6789999999987553 333 4455677888833333
No 457
>cd07122 ALDH_F20_ACDH Coenzyme A acylating aldehyde dehydrogenase (ACDH), ALDH family 20-like. Coenzyme A acylating aldehyde dehydrogenase (ACDH, EC=1.2.1.10), an NAD+ and CoA-dependent acetaldehyde dehydrogenase, functions as a single enzyme (such as the Ethanolamine utilization protein, EutE, in Salmonella typhimurium) or as part of a multifunctional enzyme to convert acetaldehyde into acetyl-CoA . The E. coli aldehyde-alcohol dehydrogenase includes the functional domains, alcohol dehydrogenase (ADH), ACDH, and pyruvate-formate-lyase deactivase; and the Entamoeba histolytica aldehyde-alcohol dehydrogenase 2 (ALDH20A1) includes the functional domains ADH and ACDH and may be critical enzymes in the fermentative pathway.
Probab=23.55 E-value=4e+02 Score=24.59 Aligned_cols=78 Identities=10% Similarity=0.028 Sum_probs=46.3
Q ss_pred CCeEEEEccchhHHHHHHH-HHHHHhhcCCeEEEccC-CCH---HHHHHHHH----hc--c---ceEEEec-HHHHHHHH
Q 019348 234 LDHVVLCVLPMFHVFGLSV-ILYDQLQKGNCVVSMGK-FDI---EMALRAIE----KY--R---VTVWWVV-PPIILALA 298 (342)
Q Consensus 234 ~~d~~~~~~p~~~~~g~~~-~~~~~l~~G~~~v~~~~-~~~---~~~~~~i~----~~--~---~t~~~~~-P~~l~~l~ 298 (342)
+--+++...|+.+...... .+..+|.+|.++++-+. ..| ..+.++++ +. . ++++... ...-..|+
T Consensus 95 P~GVv~~I~pwN~P~~~~~~~~~~ALaaGN~VVlKps~~tp~~~~~~~~~~~~~l~eaG~P~g~v~~v~g~~~~~~~~l~ 174 (436)
T cd07122 95 PVGVIAALIPSTNPTSTAIFKALIALKTRNAIIFSPHPRAKKCSIEAAKIMREAAVAAGAPEGLIQWIEEPSIELTQELM 174 (436)
T ss_pred cccEEEEEeCCCCchHHHHHHHHHHHHcCCcEEEECCcchhhHHHHHHHHHHHHHHHcCCCchhEEEecCCChHHHHHHH
Confidence 3457777788877665534 37899999999988653 332 33444443 22 2 4444432 34566777
Q ss_pred cCCCCCccCCCCceEEEeecc
Q 019348 299 KNSLVRKFDISSLKLVGSGAA 319 (342)
Q Consensus 299 ~~~~~~~~~l~~lr~~~~gG~ 319 (342)
+++ .++.+.+.|+
T Consensus 175 ~~~--------~v~~v~ftGs 187 (436)
T cd07122 175 KHP--------DVDLILATGG 187 (436)
T ss_pred cCC--------CcCEEEEcCC
Confidence 665 3556666663
No 458
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=23.49 E-value=1.8e+02 Score=24.48 Aligned_cols=53 Identities=21% Similarity=0.241 Sum_probs=42.7
Q ss_pred cCCCHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCCH
Q 019348 268 GKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGK 323 (342)
Q Consensus 268 ~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~ 323 (342)
..+-.++-.+.+++.++.+..+||.=+..|++.. .-.+..++.+++-.+.++.
T Consensus 162 KH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~~---~L~l~~l~~ivlD~s~~D~ 214 (252)
T PF14617_consen 162 KHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLENG---ALSLSNLKRIVLDWSYLDQ 214 (252)
T ss_pred hhccHHHHHHHHHhCCceEEEeChHHHHHHHHcC---CCCcccCeEEEEcCCcccc
Confidence 3356788888999999999999999999998654 4457889999998876553
No 459
>cd07152 ALDH_BenzADH NAD-dependent benzaldehyde dehydrogenase II-like. NAD-dependent, benzaldehyde dehydrogenase II (XylC, BenzADH, EC=1.2.1.28) is involved in the oxidation of benzyl alcohol to benzoate. In Acinetobacter calcoaceticus, this process is carried out by the chromosomally encoded, benzyl alcohol dehydrogenase (xylB) and benzaldehyde dehydrogenase II (xylC) enzymes; whereas in Pseudomonas putida they are encoded by TOL plasmids.
Probab=23.45 E-value=5.7e+02 Score=23.49 Aligned_cols=79 Identities=19% Similarity=0.106 Sum_probs=45.6
Q ss_pred CCeEEEEccchhHHHHHH-HHHHHHhhcCCeEEEccC-CCH----HHHHHHHHhcc--ceEEEec---HHHHHHHHcCCC
Q 019348 234 LDHVVLCVLPMFHVFGLS-VILYDQLQKGNCVVSMGK-FDI----EMALRAIEKYR--VTVWWVV---PPIILALAKNSL 302 (342)
Q Consensus 234 ~~d~~~~~~p~~~~~g~~-~~~~~~l~~G~~~v~~~~-~~~----~~~~~~i~~~~--~t~~~~~---P~~l~~l~~~~~ 302 (342)
+--++....|+.+..... ..+..+|.+|.++++-+. ..| ..+.+.+++.+ ...+.++ ...-..|..++
T Consensus 110 P~Gvv~~i~p~N~P~~~~~~~~~~ALaaGN~VvlKps~~~p~~~~~~l~~~~~~ag~P~gvv~~v~g~~~~~~~l~~~~- 188 (443)
T cd07152 110 PLGVVGVISPFNFPLILAMRSVAPALALGNAVVLKPDPRTPVSGGVVIARLFEEAGLPAGVLHVLPGGADAGEALVEDP- 188 (443)
T ss_pred cceEEEEECCCCcHHHHHHHHHHHHHHcCCEEEEECCcccchhHHHHHHHHHHHhCcCcCcEEEecCChHHHHHHhcCC-
Confidence 345677777777765542 347899999999998643 333 24446666642 2333333 23444555443
Q ss_pred CCccCCCCceEEEeeccc
Q 019348 303 VRKFDISSLKLVGSGAAP 320 (342)
Q Consensus 303 ~~~~~l~~lr~~~~gG~~ 320 (342)
.++.+.++|+.
T Consensus 189 -------~v~~V~fTGs~ 199 (443)
T cd07152 189 -------NVAMISFTGST 199 (443)
T ss_pred -------CCCEEEEECCH
Confidence 46667666643
No 460
>cd07092 ALDH_ABALDH-YdcW Escherichia coli NAD+-dependent gamma-aminobutyraldehyde dehydrogenase YdcW-like. NAD+-dependent, tetrameric, gamma-aminobutyraldehyde dehydrogenase (ABALDH), YdcW of Escherichia coli K12, catalyzes the oxidation of gamma-aminobutyraldehyde to gamma-aminobutyric acid. ABALDH can also oxidize n-alkyl medium-chain aldehydes, but with a lower catalytic efficiency.
Probab=23.38 E-value=4.1e+02 Score=24.51 Aligned_cols=79 Identities=16% Similarity=0.018 Sum_probs=44.4
Q ss_pred CCeEEEEccchhHHHHH-HHHHHHHhhcCCeEEEccC-C---CHHHHHHHHHhc-c---ceEEEecHH-HHHHHHcCCCC
Q 019348 234 LDHVVLCVLPMFHVFGL-SVILYDQLQKGNCVVSMGK-F---DIEMALRAIEKY-R---VTVWWVVPP-IILALAKNSLV 303 (342)
Q Consensus 234 ~~d~~~~~~p~~~~~g~-~~~~~~~l~~G~~~v~~~~-~---~~~~~~~~i~~~-~---~t~~~~~P~-~l~~l~~~~~~ 303 (342)
+-.++++..|+.+.... +..+..+|.+|.++++-+. . ....+.+++++. . ++++..... ....|..++
T Consensus 118 P~Gvv~~I~P~N~P~~~~~~~~~~AL~aGN~VIlKps~~~~~~~~~l~~~~~~glP~g~~~~v~g~~~~~~~~l~~~~-- 195 (450)
T cd07092 118 PIGVVAQIAPWNYPLMMAAWKIAPALAAGNTVVLKPSETTPLTTLLLAELAAEVLPPGVVNVVCGGGASAGDALVAHP-- 195 (450)
T ss_pred ccceEEEECCCCcHHHHHHHHHHHHHHcCCEEEEECCccchHHHHHHHHHHHhcCCcccEEEeecCchHHHHHHhcCC--
Confidence 34567777787665444 2457889999999888643 2 334555555541 1 222322222 445555443
Q ss_pred CccCCCCceEEEeeccc
Q 019348 304 RKFDISSLKLVGSGAAP 320 (342)
Q Consensus 304 ~~~~l~~lr~~~~gG~~ 320 (342)
.++.+.+.|+.
T Consensus 196 ------~v~~V~fTGs~ 206 (450)
T cd07092 196 ------RVRMVSLTGSV 206 (450)
T ss_pred ------CCCEEEEECcH
Confidence 46667766643
No 461
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=23.35 E-value=4.3e+02 Score=21.82 Aligned_cols=35 Identities=6% Similarity=-0.172 Sum_probs=24.7
Q ss_pred CCCEEEEECCCCChHHHHHHHHHHhCCeEeccCCCC
Q 019348 78 KKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVY 113 (342)
Q Consensus 78 ~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~ 113 (342)
.-|.|.|-+|.+.. ....-|+..+-.+.+|+.|..
T Consensus 83 ~yD~iiID~pp~~~-~~~~~al~~aD~vliP~~ps~ 117 (231)
T PRK13849 83 GFDYALADTHGGSS-ELNNTIIASSNLLLIPTMLTP 117 (231)
T ss_pred CCCEEEEeCCCCcc-HHHHHHHHHCCEEEEeccCcH
Confidence 45788888888765 334556777778888887754
No 462
>TIGR03772 anch_rpt_subst anchored repeat ABC transporter, substrate-binding protein. Members of this protein family are ABC transporter permease subunits as identified by pfam00950, but additionally contain the Actinobacterial insert domain described by TIGR03769. Some homologs (lacking the insert) have been described as transporters of manganese or of chelated iron. Members of this family typically are found along with an ATP-binding cassette protein, a permease, and an LPXTG-anchored protein with two or three copies of the TIGR03769 insert that occurs just once in this protein family.
Probab=23.30 E-value=6.3e+02 Score=23.74 Aligned_cols=56 Identities=20% Similarity=0.269 Sum_probs=37.2
Q ss_pred CEEEEECCCCChHHHHHHHHHHhCCeEeccCCCC--CH---HHHHHHhhhcCceEEEEcccch
Q 019348 80 DVVLIFAPNSIHFPICFLGVIAIGAIASTANPVY--TV---SELSKQVKDSNPKLVITVPELW 137 (342)
Q Consensus 80 ~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~--~~---~~l~~~l~~~~~~~vi~~~~~~ 137 (342)
.+..+...+...++.--+++-..|.+ -+++.. ++ .++.+.++..++++||+++...
T Consensus 371 ~r~vvt~H~af~YLa~~YGL~~~~~~--~~~~~~ePS~~~L~~Li~~IK~~~V~~IF~Epq~~ 431 (479)
T TIGR03772 371 RRHLITTHDAYSYLGQAYGLNIAGFV--TPNPAVEPSLADRRRLTRTIENLKVPAVFLEPNLA 431 (479)
T ss_pred CCEEEEECCcHHHHHHHCCCeEEeee--ccCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 35667777788888877777666532 233332 33 3466677888999999987653
No 463
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=23.21 E-value=5.2e+02 Score=22.76 Aligned_cols=51 Identities=14% Similarity=0.181 Sum_probs=34.4
Q ss_pred HHhCCeEeccCCCCCHHHHHHHhhhcCceEEEEcccchhhhhccCCCeEEecC
Q 019348 100 IAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGS 152 (342)
Q Consensus 100 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ 152 (342)
.+.+ ++|.+.++ ..+.....++...+++||.|+.+.+.-..-+...+.++.
T Consensus 104 ~~~~-~~V~V~~d-R~~~~~~~~~~~~~dviilDDGfQh~~L~rDl~Ivl~D~ 154 (326)
T PF02606_consen 104 RKLP-VPVIVGPD-RVAAARAALKEFPADVIILDDGFQHRRLKRDLDIVLVDA 154 (326)
T ss_pred HhcC-CcEEEeCc-HHHHHHHHHHHCCCCEEEEcCCcccccccCCcEEEEEeC
Confidence 3444 55555543 344566677777799999999888876656666777764
No 464
>PLN03026 histidinol-phosphate aminotransferase; Provisional
Probab=23.19 E-value=5.4e+02 Score=22.98 Aligned_cols=54 Identities=19% Similarity=0.296 Sum_probs=26.6
Q ss_pred CCCCEEEEECCCCChHHHHHHHHHHhCCeEeccCC----CCCHHHHHHHhhhcCceEEEEc
Q 019348 77 TKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANP----VYTVSELSKQVKDSNPKLVITV 133 (342)
Q Consensus 77 ~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~----~~~~~~l~~~l~~~~~~~vi~~ 133 (342)
++||.|++..|. +......+...|+.++.++. ....+++...++..++++++..
T Consensus 125 ~~gd~Vlv~~P~---y~~y~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~~~~~~~v~l~ 182 (380)
T PLN03026 125 DPGDKIIDCPPT---FGMYVFDAAVNGAEVIKVPRTPDFSLDVPRIVEAVETHKPKLLFLT 182 (380)
T ss_pred CCCCEEEEcCCC---hHHHHHHHHHcCCEEEEeecCCCCCcCHHHHHHHHhccCCcEEEEe
Confidence 467776665443 22223334456665544432 1234555555544456666543
No 465
>PRK07868 acyl-CoA synthetase; Validated
Probab=22.94 E-value=4.2e+02 Score=27.55 Aligned_cols=68 Identities=12% Similarity=0.176 Sum_probs=47.7
Q ss_pred HcCCCCCCEEEEECCCCChHH--HHHHHHHHhCCeEeccCCCCCHHHHHHHhhhcCceEEEEcccchhhhh
Q 019348 73 HLGITKKDVVLIFAPNSIHFP--ICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVK 141 (342)
Q Consensus 73 ~~g~~~g~~V~i~~~n~~~~~--~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 141 (342)
..++.++|++...+|-+..+- ..+++++ .|+..+.+.+...++.+.+.+++.++.++...+.....+.
T Consensus 640 ~~~l~~~d~~L~~~Pl~h~~gl~~~l~~~l-~gG~~vvl~~~~~~~~~~~~I~~~~vT~~~~~Ps~l~~L~ 709 (994)
T PRK07868 640 AAALDRRDTVYCLTPLHHESGLLVSLGGAV-VGGSRIALSRGLDPDRFVQEVRQYGVTVVSYTWAMLREVV 709 (994)
T ss_pred hcCCCCCCeEEEecChHHHhHHHHHHHHHh-ccceEEEecCCCCHHHHHHHHHHhCCcEEEeHHHHHHHHH
Confidence 347788999888877654433 2334444 4444455566788999999999999999998777665543
No 466
>PLN02550 threonine dehydratase
Probab=22.89 E-value=7.1e+02 Score=24.18 Aligned_cols=90 Identities=19% Similarity=0.131 Sum_probs=52.9
Q ss_pred ceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeEeccCCCCCHHHHHHHh
Q 019348 43 KLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQV 122 (342)
Q Consensus 43 ~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l 122 (342)
++.+-..+.+.+-||+. .-..+.+. .|.+....+| .|. ...+-....+.++|.++|.-+..+=|...+......+
T Consensus 125 ~IylK~E~lqptGSFK~-RGA~n~I~-~L~~e~~~~G-VV~--aSaGNhAqgvA~aA~~lGika~IvmP~~tp~~Kv~~~ 199 (591)
T PLN02550 125 KVLLKREDLQPVFSFKL-RGAYNMMA-KLPKEQLDKG-VIC--SSAGNHAQGVALSAQRLGCDAVIAMPVTTPEIKWQSV 199 (591)
T ss_pred EEEEEEcCCCCCCcHHH-HHHHHHHH-HHHHhcCCCC-EEE--ECCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHH
Confidence 45555443344445654 11122222 2322234555 333 4555566667778999998666655655556667778
Q ss_pred hhcCceEEEEcccch
Q 019348 123 KDSNPKLVITVPELW 137 (342)
Q Consensus 123 ~~~~~~~vi~~~~~~ 137 (342)
+..+++++++.....
T Consensus 200 r~~GAeVvl~g~~~d 214 (591)
T PLN02550 200 ERLGATVVLVGDSYD 214 (591)
T ss_pred HHcCCEEEEeCCCHH
Confidence 999999999986543
No 467
>PRK15398 aldehyde dehydrogenase EutE; Provisional
Probab=22.88 E-value=4.1e+02 Score=24.79 Aligned_cols=80 Identities=18% Similarity=0.057 Sum_probs=46.6
Q ss_pred CCCeEEEEccchhHHHHHHH-HHHHHhhcCCeEEEccC-CCH---HHHHHHHHh----c--cceEEEec----HHHHHHH
Q 019348 233 ELDHVVLCVLPMFHVFGLSV-ILYDQLQKGNCVVSMGK-FDI---EMALRAIEK----Y--RVTVWWVV----PPIILAL 297 (342)
Q Consensus 233 ~~~d~~~~~~p~~~~~g~~~-~~~~~l~~G~~~v~~~~-~~~---~~~~~~i~~----~--~~t~~~~~----P~~l~~l 297 (342)
.+--+++...|+.+...... .+..+|.+|.++++=+. ..| ..+.+++++ . ....+.++ ...-..|
T Consensus 128 ~P~GVV~~I~PwN~P~~~~~~~ia~ALaaGN~VVlKps~~tp~t~~~l~~ll~~~l~eaGlP~gvv~vv~g~~~~~~~~L 207 (465)
T PRK15398 128 APFGVIGAVTPSTNPTETIINNAISMLAAGNSVVFSPHPGAKKVSLRAIELLNEAIVAAGGPENLVVTVAEPTIETAQRL 207 (465)
T ss_pred cccEEEEEeeCCCCchHHHHHHHHHHHHhCCcEEEECCccchHHHHHHHHHHHHHHHHcCCCCCeEEEecCCCHHHHHHH
Confidence 45677888888866554433 46789999999998654 332 344455543 1 22333333 2345566
Q ss_pred HcCCCCCccCCCCceEEEeeccc
Q 019348 298 AKNSLVRKFDISSLKLVGSGAAP 320 (342)
Q Consensus 298 ~~~~~~~~~~l~~lr~~~~gG~~ 320 (342)
++++ .++.+.+.|+.
T Consensus 208 ~~~~--------~vd~I~fTGS~ 222 (465)
T PRK15398 208 MKHP--------GIALLVVTGGP 222 (465)
T ss_pred HcCC--------CccEEEeeCCH
Confidence 6554 36667766643
No 468
>TIGR02288 PaaN_2 phenylacetic acid degradation protein paaN. This family includes sequences from Burkholderia, Bordetella, Streptomyces. Other PaaN enzymes are represented by a separate model, TIGR02278.
Probab=22.85 E-value=5.2e+02 Score=24.77 Aligned_cols=79 Identities=15% Similarity=0.041 Sum_probs=45.4
Q ss_pred CCeEEEEccchhHHHHHH-HHHHHHhhcCCeEEEccC-CCHH-------HHHHHHHhcc-----ceEEEec--HHHHHHH
Q 019348 234 LDHVVLCVLPMFHVFGLS-VILYDQLQKGNCVVSMGK-FDIE-------MALRAIEKYR-----VTVWWVV--PPIILAL 297 (342)
Q Consensus 234 ~~d~~~~~~p~~~~~g~~-~~~~~~l~~G~~~v~~~~-~~~~-------~~~~~i~~~~-----~t~~~~~--P~~l~~l 297 (342)
+--+++...|+.+..... ..+..+|..|.++++=+. ..|. .+.+++.+.+ ++++... ..+-+.|
T Consensus 193 P~GVv~vI~PwNfP~~~~~~~l~~ALaaGN~VVlKPs~~tpl~~~~~~~~l~e~l~eAGlP~gvv~lv~g~~g~~~~~~L 272 (551)
T TIGR02288 193 PRGIALVIGCSTFPTWNTYPGLFASLATGNPVLVKPHPGAILPLALTVQVAREVLGEAGFDPNLVTLAAFDPGHEAAQRL 272 (551)
T ss_pred ecCeEEEEcCcccHHHHHHHHHHHHHHcCCeEEEECCcccchhHHHHHHHHHHHHHHcCcChhHEEEecCCCcHHHHHHH
Confidence 455666777776655442 357899999999998543 3332 2335555542 3333332 2345667
Q ss_pred HcCCCCCccCCCCceEEEeeccc
Q 019348 298 AKNSLVRKFDISSLKLVGSGAAP 320 (342)
Q Consensus 298 ~~~~~~~~~~l~~lr~~~~gG~~ 320 (342)
..++ .++.+.++|+.
T Consensus 273 ~~~p--------~v~~I~FTGSt 287 (551)
T TIGR02288 273 ATDP--------AVRIIDFTGSN 287 (551)
T ss_pred HhCC--------CccEEEEECCH
Confidence 6665 46667666643
No 469
>cd07133 ALDH_CALDH_CalB Coniferyl aldehyde dehydrogenase-like. Coniferyl aldehyde dehydrogenase (CALDH, EC=1.2.1.68) of Pseudomonas sp. strain HR199 (CalB) which catalyzes the NAD+-dependent oxidation of coniferyl aldehyde to ferulic acid, and similar sequences, are present in this CD.
Probab=22.84 E-value=5.7e+02 Score=23.48 Aligned_cols=79 Identities=18% Similarity=0.069 Sum_probs=43.8
Q ss_pred CCeEEEEccchhHHHHH-HHHHHHHhhcCCeEEEccC-CCH---HHHHHHHHhc----cceEEEecHHHHHHHHcCCCCC
Q 019348 234 LDHVVLCVLPMFHVFGL-SVILYDQLQKGNCVVSMGK-FDI---EMALRAIEKY----RVTVWWVVPPIILALAKNSLVR 304 (342)
Q Consensus 234 ~~d~~~~~~p~~~~~g~-~~~~~~~l~~G~~~v~~~~-~~~---~~~~~~i~~~----~~t~~~~~P~~l~~l~~~~~~~ 304 (342)
+-.+++...|+.+...+ ...+..+|.+|.++++-+. ..| ..+.+++++. -++++..-+..-..|..+
T Consensus 101 P~Gvv~~I~pwN~P~~~~~~~~~~ALaaGN~vvlKps~~~p~~~~~l~~l~~~alP~g~~~~v~g~~~~~~~l~~~---- 176 (434)
T cd07133 101 PLGVVGIIVPWNYPLYLALGPLIAALAAGNRVMIKPSEFTPRTSALLAELLAEYFDEDEVAVVTGGADVAAAFSSL---- 176 (434)
T ss_pred cccEEEEEcCCchHHHHHHHHHHHHHHcCCEEEEECCCcChHHHHHHHHHHHHhCCcCeEEEEeCChHHHHHHHhC----
Confidence 33577777887766443 2347789999999888643 333 4444444442 234444333444444422
Q ss_pred ccCCCCceEEEeecccC
Q 019348 305 KFDISSLKLVGSGAAPL 321 (342)
Q Consensus 305 ~~~l~~lr~~~~gG~~l 321 (342)
.++.+.++|+.-
T Consensus 177 -----~v~~V~ftGs~~ 188 (434)
T cd07133 177 -----PFDHLLFTGSTA 188 (434)
T ss_pred -----CCCEEEEeCchH
Confidence 255666666443
No 470
>cd07140 ALDH_F1L_FTFDH 10-formyltetrahydrofolate dehydrogenase, ALDH family 1L. 10-formyltetrahydrofolate dehydrogenase (FTHFDH, EC=1.5.1.6), also known as aldehyde dehydrogenase family 1 member L1 (ALDH1L1) in humans, is a multi-domain homotetramer with an N-terminal formyl transferase domain and a C-terminal ALDH domain. FTHFDH catalyzes an NADP+-dependent dehydrogenase reaction resulting in the conversion of 10-formyltetrahydrofolate to tetrahydrofolate and CO2. The ALDH domain is also capable of the oxidation of short chain aldehydes to their corresponding acids.
Probab=22.79 E-value=4.9e+02 Score=24.40 Aligned_cols=80 Identities=14% Similarity=-0.020 Sum_probs=47.3
Q ss_pred CCeEEEEccchhHHHHHH-HHHHHHhhcCCeEEEccC-C---CHHHHHHHHHhcc-----ceEEEecH-HHHHHHHcCCC
Q 019348 234 LDHVVLCVLPMFHVFGLS-VILYDQLQKGNCVVSMGK-F---DIEMALRAIEKYR-----VTVWWVVP-PIILALAKNSL 302 (342)
Q Consensus 234 ~~d~~~~~~p~~~~~g~~-~~~~~~l~~G~~~v~~~~-~---~~~~~~~~i~~~~-----~t~~~~~P-~~l~~l~~~~~ 302 (342)
+--++....|+.+...+. ..+..+|.+|.++++=++ . ....+.+++.+.+ ++++.... .+-..|..++
T Consensus 147 P~GVv~~I~PwN~P~~~~~~~i~~ALaaGN~VVlKPs~~tp~~~~~l~~~~~~aglP~gv~~~v~g~~~~~~~~L~~~~- 225 (486)
T cd07140 147 PIGVCGIVIPWNYPLMMLAWKMAACLAAGNTVVLKPAQVTPLTALKFAELTVKAGFPKGVINILPGSGSLVGQRLSDHP- 225 (486)
T ss_pred ccceEEEEcCCchHHHHHHHHHHHHHHhCCEEEEECCccCcHHHHHHHHHHHHcCcCCCcEEEEecCchHHHHHHhcCC-
Confidence 446777778877765532 347788999999988643 3 2345556665542 23444322 3445666554
Q ss_pred CCccCCCCceEEEeecccC
Q 019348 303 VRKFDISSLKLVGSGAAPL 321 (342)
Q Consensus 303 ~~~~~l~~lr~~~~gG~~l 321 (342)
.++.+.++|+.-
T Consensus 226 -------~v~~v~ftGs~~ 237 (486)
T cd07140 226 -------DVRKLGFTGSTP 237 (486)
T ss_pred -------CCCEEEEECcHH
Confidence 356666666443
No 471
>cd07150 ALDH_VaniDH_like Pseudomonas putida vanillin dehydrogenase-like. Vanillin dehydrogenase (Vdh, VaniDH) involved in the metabolism of ferulic acid and other related sequences are included in this CD. The E. coli vanillin dehydrogenase (LigV) preferred NAD+ to NADP+ and exhibited a broad substrate preference, including vanillin, benzaldehyde, protocatechualdehyde, m-anisaldehyde, and p-hydroxybenzaldehyde.
Probab=22.75 E-value=3.7e+02 Score=24.79 Aligned_cols=79 Identities=19% Similarity=0.044 Sum_probs=46.3
Q ss_pred CCeEEEEccchhHHHHHH-HHHHHHhhcCCeEEEccC-C---CHHHHHHHHHhcc--ceEEEecH----HHHHHHHcCCC
Q 019348 234 LDHVVLCVLPMFHVFGLS-VILYDQLQKGNCVVSMGK-F---DIEMALRAIEKYR--VTVWWVVP----PIILALAKNSL 302 (342)
Q Consensus 234 ~~d~~~~~~p~~~~~g~~-~~~~~~l~~G~~~v~~~~-~---~~~~~~~~i~~~~--~t~~~~~P----~~l~~l~~~~~ 302 (342)
+--+++...|+.+..... ..+..+|.+|.++++-+. . ....+.+++.+.+ ...+.+++ ..-..|..++
T Consensus 119 P~GVv~~I~P~N~P~~~~~~~~~~ALaaGN~VilKps~~~p~t~~~l~~~~~~ag~P~g~v~~v~g~~~~~~~~l~~~~- 197 (451)
T cd07150 119 PLGVVAGITPFNYPLILATKKVAFALAAGNTVVLKPSEETPVIGLKIAEIMEEAGLPKGVFNVVTGGGAEVGDELVDDP- 197 (451)
T ss_pred cccEEEEECCCccHHHHHHHHHHHHHhcCCeEEEECCccCcHHHHHHHHHHHHhCCCcCcEEEeeCCCcHHHHHHhcCC-
Confidence 345777777877765432 357899999999988653 2 3355666666642 22333322 3445555554
Q ss_pred CCccCCCCceEEEeeccc
Q 019348 303 VRKFDISSLKLVGSGAAP 320 (342)
Q Consensus 303 ~~~~~l~~lr~~~~gG~~ 320 (342)
.++.+.++|+.
T Consensus 198 -------~v~~V~ftGs~ 208 (451)
T cd07150 198 -------RVRMVTFTGST 208 (451)
T ss_pred -------CCCEEEEECcH
Confidence 35566666643
No 472
>TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA.
Probab=22.73 E-value=3.4e+02 Score=24.16 Aligned_cols=54 Identities=9% Similarity=0.116 Sum_probs=33.0
Q ss_pred CCCCEEEEECCCCChHHHHHHHHHHhCCeEeccCCC------CCHHHHHHHhhh------cCceEEEEc
Q 019348 77 TKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPV------YTVSELSKQVKD------SNPKLVITV 133 (342)
Q Consensus 77 ~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~------~~~~~l~~~l~~------~~~~~vi~~ 133 (342)
++||.|++..++. ...+.++...|+.+..++.+ ...+++...++. -++++|+++
T Consensus 88 ~~gd~Vl~~~~~h---~s~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~~~ 153 (370)
T TIGR02539 88 KEGDWVVLDGLAH---YTSYVAAERAGLNVKEVPHTGHPEYKVDPEGYGEVIEEVEDESGKPPVLALLT 153 (370)
T ss_pred CCCCEEEECCccc---HHHHHHHHHcCCEEEEEecCCcccCCcCHHHHHHHHHHhhhccCCCcEEEEEE
Confidence 5788877643333 22335677888877766654 256777777753 256666653
No 473
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=22.58 E-value=4.9e+02 Score=23.83 Aligned_cols=33 Identities=9% Similarity=0.016 Sum_probs=19.9
Q ss_pred CCCEEEEECCCCChHHHHHHHHHHhCCeEeccC
Q 019348 78 KKDVVLIFAPNSIHFPICFLGVIAIGAIASTAN 110 (342)
Q Consensus 78 ~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~ 110 (342)
.|.+|+|.......+-++-+.+-.+|..++.+-
T Consensus 300 ~gkrv~i~g~~~~~~~l~~~L~~elG~~vv~~~ 332 (430)
T cd01981 300 TGKRAFVFGDATHVAAATRILAREMGFRVVGAG 332 (430)
T ss_pred cCCeEEEEcChHHHHHHHHHHHHHcCCEEEecc
Confidence 367888888755444444444446787766544
No 474
>PRK10411 DNA-binding transcriptional activator FucR; Provisional
Probab=22.56 E-value=2e+02 Score=23.92 Aligned_cols=42 Identities=21% Similarity=0.299 Sum_probs=21.7
Q ss_pred CHHHHHHHHHhccceEEEecHHHHHHHHcCCCCCccCCCCceEEEeeccc
Q 019348 271 DIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAP 320 (342)
Q Consensus 271 ~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~ 320 (342)
....+.+.+...++|++.-.+.+...|...+ +++.+++||..
T Consensus 104 T~~~l~~~L~~~~ltVvTNs~~ia~~l~~~~--------~~~vil~GG~~ 145 (240)
T PRK10411 104 TCWYLARQLPDINIQVFTNSHPICQELGKRE--------RIQLISSGGTL 145 (240)
T ss_pred HHHHHHHhhCCCCeEEEeCCHHHHHHHhcCC--------CCEEEEECCEE
Confidence 3444455554434555555566565554332 35556666643
No 475
>cd07559 ALDH_ACDHII_AcoD-like Ralstonia eutrophus NAD+-dependent acetaldehyde dehydrogenase II and Staphylococcus aureus AldA1 (SACOL0154)-like. Included in this CD is the NAD+-dependent, acetaldehyde dehydrogenase II (AcDHII, AcoD, EC=1.2.1.3) from Ralstonia (Alcaligenes) eutrophus H16 involved in the catabolism of acetoin and ethanol, and similar proteins, such as, the dimeric dihydrolipoamide dehydrogenase of the acetoin dehydrogenase enzyme system of Klebsiella pneumonia. Also included are sequences similar to the NAD+-dependent chloroacetaldehyde dehydrogenases (AldA and AldB) of Xanthobacter autotrophicus GJ10 which are involved in the degradation of 1,2-dichloroethane, as well as, the uncharacterized aldehyde dehydrogenase from Staphylococcus aureus (AldA1, locus SACOL0154) and other similar sequences.
Probab=22.51 E-value=5.2e+02 Score=24.15 Aligned_cols=79 Identities=19% Similarity=0.077 Sum_probs=46.0
Q ss_pred CCeEEEEccchhHHHHHHH-HHHHHhhcCCeEEEccC-CC---HHHHHHHHHhc-c---ceEEEec-HHHHHHHHcCCCC
Q 019348 234 LDHVVLCVLPMFHVFGLSV-ILYDQLQKGNCVVSMGK-FD---IEMALRAIEKY-R---VTVWWVV-PPIILALAKNSLV 303 (342)
Q Consensus 234 ~~d~~~~~~p~~~~~g~~~-~~~~~l~~G~~~v~~~~-~~---~~~~~~~i~~~-~---~t~~~~~-P~~l~~l~~~~~~ 303 (342)
+-.++....|+.+...+.. .+..+|.+|.++++-+. .. ...+.+++++. . ++++... ...-..|..++
T Consensus 136 P~GVV~~I~PwN~P~~~~~~~i~~ALaaGN~VV~KPs~~tp~~~~~l~~l~~~~lP~gvv~~v~g~~~~~~~~L~~~~-- 213 (480)
T cd07559 136 PLGVVGQIIPWNFPLLMAAWKLAPALAAGNTVVLKPASQTPLSILVLMELIGDLLPKGVVNVVTGFGSEAGKPLASHP-- 213 (480)
T ss_pred ccceEEEECCCchHHHHHHHHHHHHHHcCCEEEEECchhhhHHHHHHHHHHHHhCCcCeEEEEecCchHHHHHHhcCC--
Confidence 4457777888877666533 46789999999888653 22 23455555442 2 2333332 23445565554
Q ss_pred CccCCCCceEEEeeccc
Q 019348 304 RKFDISSLKLVGSGAAP 320 (342)
Q Consensus 304 ~~~~l~~lr~~~~gG~~ 320 (342)
.++.+.++|++
T Consensus 214 ------~v~~V~fTGs~ 224 (480)
T cd07559 214 ------RIAKLAFTGST 224 (480)
T ss_pred ------CCCEEEEECcH
Confidence 46666666643
No 476
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=22.50 E-value=2.9e+02 Score=19.63 Aligned_cols=47 Identities=13% Similarity=0.044 Sum_probs=33.3
Q ss_pred hHHHHHHHHHHHHhhcCCeEEEc-cCCCHHHHHHHHHhccceEEEecH
Q 019348 245 FHVFGLSVILYDQLQKGNCVVSM-GKFDIEMALRAIEKYRVTVWWVVP 291 (342)
Q Consensus 245 ~~~~g~~~~~~~~l~~G~~~v~~-~~~~~~~~~~~i~~~~~t~~~~~P 291 (342)
.|..|........-..|-.++.. ....++++.+.+.+.++.++.++-
T Consensus 11 ~H~lG~~~~~~~l~~~G~~V~~lg~~~~~~~l~~~~~~~~pdvV~iS~ 58 (119)
T cd02067 11 GHDIGKNIVARALRDAGFEVIDLGVDVPPEEIVEAAKEEDADAIGLSG 58 (119)
T ss_pred hhhHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEec
Confidence 67788733333333478777665 456789999999999998877664
No 477
>PRK06710 long-chain-fatty-acid--CoA ligase; Validated
Probab=22.47 E-value=4.1e+02 Score=25.14 Aligned_cols=82 Identities=16% Similarity=0.077 Sum_probs=56.2
Q ss_pred hHhHHHHHHHhhhhhhhh-ccccCCCeEEEEccchhHHHHHHHHHHHHhhcCCeEEEc-cCCCHHHHHHHHHhccceEEE
Q 019348 211 ILTHKNFIAASLMISAHQ-ELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSM-GKFDIEMALRAIEKYRVTVWW 288 (342)
Q Consensus 211 ~~t~~~l~~~~~~~~~~~-~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~-~~~~~~~~~~~i~~~~~t~~~ 288 (342)
.+|...+...+..+.... ..+...+|++...++-..- ++..++.++..|+..+.. +.+....+...+++.+++.++
T Consensus 49 ~~ty~eL~~~~~~la~~L~~~gv~~gd~V~i~~~~~~~--~~~~~lA~~~~G~~~vpi~p~~~~~~l~~~l~~~~~~~ii 126 (563)
T PRK06710 49 DITFSVFHDKVKRFANYLQKLGVEKGDRVAIMLPNCPQ--AVIGYYGTLLAGGIVVQTNPLYTERELEYQLHDSGAKVIL 126 (563)
T ss_pred eecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChH--HHHHHHHHHHcCeEEeccCcccCHHHHHHHHhccCCeEEE
Confidence 367777776655433222 2234567888877766543 336688899999877766 446778898999999999988
Q ss_pred ecHHHH
Q 019348 289 VVPPII 294 (342)
Q Consensus 289 ~~P~~l 294 (342)
..+...
T Consensus 127 ~~~~~~ 132 (563)
T PRK06710 127 CLDLVF 132 (563)
T ss_pred Eeccch
Confidence 876543
No 478
>PRK03958 tRNA 2'-O-methylase; Reviewed
Probab=22.46 E-value=3.9e+02 Score=21.08 Aligned_cols=89 Identities=11% Similarity=-0.033 Sum_probs=53.7
Q ss_pred CCeEEEEccchhHHHHHHHHHHHHhhcCCeEEEccCCCHHHHHHHHHhc-cceEEEecH----HHHHHHHcCCCCCccCC
Q 019348 234 LDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKY-RVTVWWVVP----PIILALAKNSLVRKFDI 308 (342)
Q Consensus 234 ~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~-~~t~~~~~P----~~l~~l~~~~~~~~~~l 308 (342)
.-+.++...|.-....++.-+..-+ |+..-+--..+.+..++.+++. ++-++.++- ..+..+-+....
T Consensus 30 Ga~~~yiv~~~~~q~~~v~~I~~~W--Gg~fnv~~~~s~~~~i~~~k~~G~vvhLtmyga~~~~~~~~ir~~~~~----- 102 (176)
T PRK03958 30 GADKIILASNDEHVKESVEDIVERW--GGPFEVEVTKSWKKEIREWKDGGIVVHLTMYGENIQDVEPEIREAHRK----- 102 (176)
T ss_pred CCceEEEecCcHHHHHHHHHHHHhc--CCceEEEEcCCHHHHHHHHHhCCcEEEEEEecCCccchHHHHHHhhcc-----
Confidence 3456666677777777655666666 8776555445678888888754 333333332 244444332111
Q ss_pred CCceEEEeecccCCHHHHHHH
Q 019348 309 SSLKLVGSGAAPLGKELMEDC 329 (342)
Q Consensus 309 ~~lr~~~~gG~~l~~~~~~~~ 329 (342)
..--.+++||+.+|.++++.+
T Consensus 103 ~~p~LIvvGg~gvp~evye~a 123 (176)
T PRK03958 103 GEPLLIVVGAEKVPREVYELA 123 (176)
T ss_pred CCcEEEEEcCCCCCHHHHhhC
Confidence 112368889999999988764
No 479
>PRK08180 feruloyl-CoA synthase; Reviewed
Probab=22.40 E-value=4.2e+02 Score=25.54 Aligned_cols=80 Identities=6% Similarity=-0.027 Sum_probs=56.6
Q ss_pred hhHhHHHHHHHhhhhhhhh-ccccCCCeEEEEccchhHHHHHHHHHHHHhhcCCeEEEccC-CC-----HHHHHHHHHhc
Q 019348 210 VILTHKNFIAASLMISAHQ-ELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGK-FD-----IEMALRAIEKY 282 (342)
Q Consensus 210 v~~t~~~l~~~~~~~~~~~-~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~-~~-----~~~~~~~i~~~ 282 (342)
..+|+..+...+..+.... ..+..++|++...++-.. .++..++.++..|+.++..+. +. +..+...+++.
T Consensus 68 ~~~Ty~el~~~v~~~A~~L~~~Gv~~gd~Vai~~~n~~--e~~~~~lA~~~~Gav~vpl~~~~~~~~~~~~~l~~~l~~~ 145 (614)
T PRK08180 68 RRLTYAEALERVRAIAQALLDRGLSAERPLMILSGNSI--EHALLALAAMYAGVPYAPVSPAYSLVSQDFGKLRHVLELL 145 (614)
T ss_pred eEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCH--HHHHHHHHHHHcCCeEeeeccccccccCCHHHHHHHHhcC
Confidence 3568888877765543222 234567888888776654 333678899999999887754 33 58888899999
Q ss_pred cceEEEecH
Q 019348 283 RVTVWWVVP 291 (342)
Q Consensus 283 ~~t~~~~~P 291 (342)
++..+++..
T Consensus 146 ~~~~li~~~ 154 (614)
T PRK08180 146 TPGLVFADD 154 (614)
T ss_pred CCcEEEEcC
Confidence 999888764
No 480
>PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional
Probab=22.37 E-value=6.1e+02 Score=23.29 Aligned_cols=84 Identities=13% Similarity=0.129 Sum_probs=57.8
Q ss_pred cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChH-HHHHHHHHHhCCeEeccCCC--CCHHHHHHHhhhcCceE
Q 019348 53 ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHF-PICFLGVIAIGAIASTANPV--YTVSELSKQVKDSNPKL 129 (342)
Q Consensus 53 ~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~-~~~~lA~~~~G~~~v~l~~~--~~~~~l~~~l~~~~~~~ 129 (342)
-.+|++.+...+..+... .++..++++....+-+... +...++.+..|+..+..+.. .....+.+.++..++..
T Consensus 161 v~~t~~~~~~~~~~~~~~---~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~g~~~v~~~~~~~~~~~~~~~~~~~~~~t~ 237 (503)
T PRK04813 161 VQISHDNLVSFTNWMLED---FALPEGPQFLNQAPYSFDLSVMDLYPTLASGGTLVALPKDMTANFKQLFETLPQLPINV 237 (503)
T ss_pred EEeehHHHHHHHHHHHHH---cCCCcCceeeecCCcchhHhHHHHHHHHhcCCEEEEcChhhhcCHHHHHHHHHHcCCeE
Confidence 577888887766655544 4677888877776655432 34456778889887766643 35667788888899988
Q ss_pred EEEcccchhh
Q 019348 130 VITVPELWDK 139 (342)
Q Consensus 130 vi~~~~~~~~ 139 (342)
+...+.....
T Consensus 238 ~~~~p~~~~~ 247 (503)
T PRK04813 238 WVSTPSFADM 247 (503)
T ss_pred EEeChHHHHH
Confidence 8877665443
No 481
>PRK11905 bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed
Probab=22.32 E-value=3.1e+02 Score=29.19 Aligned_cols=81 Identities=16% Similarity=0.116 Sum_probs=50.6
Q ss_pred CCeEEEEccchhHHHHHH-HHHHHHhhcCCeEEEccC-CC---HHHHHHHHHhcc--ceEEEecH----HHHHHHHcCCC
Q 019348 234 LDHVVLCVLPMFHVFGLS-VILYDQLQKGNCVVSMGK-FD---IEMALRAIEKYR--VTVWWVVP----PIILALAKNSL 302 (342)
Q Consensus 234 ~~d~~~~~~p~~~~~g~~-~~~~~~l~~G~~~v~~~~-~~---~~~~~~~i~~~~--~t~~~~~P----~~l~~l~~~~~ 302 (342)
+..++++..|+.+...+. ..+..+|.+|.++++=+. .. ...+.+++.+.+ ..++.++| .+-..|+.++
T Consensus 676 P~GVv~~IsPwNfPlai~~g~i~aALaaGN~VV~KPse~tpl~a~~l~~ll~eAGlP~gvl~lV~G~g~~vg~~Lv~~p- 754 (1208)
T PRK11905 676 PLGPVVCISPWNFPLAIFTGQIAAALVAGNTVLAKPAEQTPLIAARAVRLLHEAGVPKDALQLLPGDGRTVGAALVADP- 754 (1208)
T ss_pred CccEEEEEcCCcCHHHHHHHHHHHHHHcCCEEEEeCCcccHHHHHHHHHHHHHcCCCcccEEEeeCCchHHHHHHHcCC-
Confidence 456888999998765442 357899999999888643 33 355566666643 33444443 2556676665
Q ss_pred CCccCCCCceEEEeecccCC
Q 019348 303 VRKFDISSLKLVGSGAAPLG 322 (342)
Q Consensus 303 ~~~~~l~~lr~~~~gG~~l~ 322 (342)
.++.+.++|+.-.
T Consensus 755 -------~v~~V~FTGSt~v 767 (1208)
T PRK11905 755 -------RIAGVMFTGSTEV 767 (1208)
T ss_pred -------CcCEEEEeCCHHH
Confidence 4556666664433
No 482
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=22.27 E-value=2.1e+02 Score=24.61 Aligned_cols=55 Identities=9% Similarity=0.326 Sum_probs=44.2
Q ss_pred cceeHHHHHHH-----HH-HHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeEe
Q 019348 53 ESLSFSQFKSI-----VI-KVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIAS 107 (342)
Q Consensus 53 ~~~Ty~~l~~~-----~~-~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v 107 (342)
..+.|.++.+. +. .+...+...|+.+++.|.+.|..+...-..++|+-.+|....
T Consensus 202 iNipw~~~~~~~~~~~~~~~~~~l~~~~gi~~~~~vI~yCgsG~~As~~~~al~~lg~~~~ 262 (285)
T COG2897 202 INIPWTDLVDDGGLFKSPEEIARLYADAGIDPDKEVIVYCGSGVRASVTWLALAELGGPNN 262 (285)
T ss_pred cCcCHHHHhcCCCccCcHHHHHHHHHhcCCCCCCCEEEEcCCchHHHHHHHHHHHhCCCCc
Confidence 57888888882 22 334444578999999999999999999999999999997655
No 483
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=22.21 E-value=3e+02 Score=21.46 Aligned_cols=80 Identities=11% Similarity=0.121 Sum_probs=46.4
Q ss_pred HHHHHcCCCCCCEEEEECCCC-ChHHHHHHHHHHhCCeEeccCCCCCHHHHHHHhhh---cCceEEEEcccchhhhhccC
Q 019348 69 HSFRHLGITKKDVVLIFAPNS-IHFPICFLGVIAIGAIASTANPVYTVSELSKQVKD---SNPKLVITVPELWDKVKDLN 144 (342)
Q Consensus 69 ~~L~~~g~~~g~~V~i~~~n~-~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~---~~~~~vi~~~~~~~~~~~~~ 144 (342)
..|.+.. +.+.+|+++...+ ...+..+--++-......+. .+.+++...+++ .++++++.+..........+
T Consensus 68 ~al~~a~-~~~~~Iavv~~~~~~~~~~~~~~ll~~~i~~~~~---~~~~e~~~~i~~~~~~G~~viVGg~~~~~~A~~~g 143 (176)
T PF06506_consen 68 RALAKAK-KYGPKIAVVGYPNIIPGLESIEELLGVDIKIYPY---DSEEEIEAAIKQAKAEGVDVIVGGGVVCRLARKLG 143 (176)
T ss_dssp HHHHHCC-CCTSEEEEEEESS-SCCHHHHHHHHT-EEEEEEE---SSHHHHHHHHHHHHHTT--EEEESHHHHHHHHHTT
T ss_pred HHHHHHH-hcCCcEEEEecccccHHHHHHHHHhCCceEEEEE---CCHHHHHHHHHHHHHcCCcEEECCHHHHHHHHHcC
Confidence 3444433 4567888887544 33344444444333333333 346666666655 58999999887777778888
Q ss_pred CCeEEecC
Q 019348 145 LPAVLLGS 152 (342)
Q Consensus 145 ~~~~~~~~ 152 (342)
.+.+.+..
T Consensus 144 l~~v~i~s 151 (176)
T PF06506_consen 144 LPGVLIES 151 (176)
T ss_dssp SEEEESS-
T ss_pred CcEEEEEe
Confidence 87777764
No 484
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=22.20 E-value=5.9e+02 Score=23.02 Aligned_cols=34 Identities=15% Similarity=0.212 Sum_probs=24.0
Q ss_pred CCCCEEEEECCCCChHHHHHHHHHHhCCeEeccCC
Q 019348 77 TKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANP 111 (342)
Q Consensus 77 ~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~ 111 (342)
-.|.+|+|.......+..+ ..+..+|..++.+-.
T Consensus 284 l~gkrv~I~~~~~~~~~~~-~~l~elG~~v~~~~~ 317 (406)
T cd01967 284 LKGKKVIIYTGGARSWHVI-AALRELGMEVVAAGY 317 (406)
T ss_pred ccCCEEEEEccCcchHHHH-HHHHHcCCEEEEEEE
Confidence 3578899987766666665 577789988665533
No 485
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=22.02 E-value=3.8e+02 Score=23.31 Aligned_cols=58 Identities=5% Similarity=-0.057 Sum_probs=35.1
Q ss_pred HHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeEeccCCCCCHHHHHHHhhhcCceEEEE
Q 019348 71 FRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVIT 132 (342)
Q Consensus 71 L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~ 132 (342)
+...++++|++|+|...-+.- ..+...+...|+..+.+... ++ -..++++.+++.++.
T Consensus 158 ~~~~~~~~g~~VlV~G~g~iG-~~a~~~a~~~G~~vi~~~~~--~~-~~~~a~~~Ga~~vi~ 215 (329)
T TIGR02822 158 LLRASLPPGGRLGLYGFGGSA-HLTAQVALAQGATVHVMTRG--AA-ARRLALALGAASAGG 215 (329)
T ss_pred HHhcCCCCCCEEEEEcCCHHH-HHHHHHHHHCCCeEEEEeCC--hH-HHHHHHHhCCceecc
Confidence 345678999999999863333 33334445567754444332 22 345677788777653
No 486
>cd07116 ALDH_ACDHII-AcoD Ralstonia eutrophus NAD+-dependent acetaldehyde dehydrogenase II-like. Included in this CD is the NAD+-dependent, acetaldehyde dehydrogenase II (AcDHII, AcoD, EC=1.2.1.3) from Ralstonia (Alcaligenes) eutrophus H16 involved in the catabolism of acetoin and ethanol, and similar proteins, such as, the dimeric dihydrolipoamide dehydrogenase of the acetoin dehydrogenase enzyme system of Klebsiella pneumonia. Also included are sequences similar to the NAD+-dependent chloroacetaldehyde dehydrogenases (AldA and AldB) of Xanthobacter autotrophicus GJ10 which are involved in the degradation of 1,2-dichloroethane. These proteins apparently require RpoN factors for expression.
Probab=21.93 E-value=6.5e+02 Score=23.50 Aligned_cols=79 Identities=20% Similarity=0.076 Sum_probs=44.9
Q ss_pred CCeEEEEccchhHHHHHH-HHHHHHhhcCCeEEEccC-CCH---HHHHHHHHh-cc---ceEEEec-HHHHHHHHcCCCC
Q 019348 234 LDHVVLCVLPMFHVFGLS-VILYDQLQKGNCVVSMGK-FDI---EMALRAIEK-YR---VTVWWVV-PPIILALAKNSLV 303 (342)
Q Consensus 234 ~~d~~~~~~p~~~~~g~~-~~~~~~l~~G~~~v~~~~-~~~---~~~~~~i~~-~~---~t~~~~~-P~~l~~l~~~~~~ 303 (342)
+--++....|+.+...+. ..+..+|.+|.++++-+. ..| ..+.+++++ .. ++++... ...-..|+.++
T Consensus 136 P~GVv~~I~PwN~P~~~~~~~~~~ALaaGN~VV~KPs~~tp~~~~~l~~l~~~alP~gvv~~v~g~~~~~~~~L~~~~-- 213 (479)
T cd07116 136 PLGVVGQIIPWNFPLLMATWKLAPALAAGNCVVLKPAEQTPASILVLMELIGDLLPPGVVNVVNGFGLEAGKPLASSK-- 213 (479)
T ss_pred ccceEEEECCCchHHHHHHHHHHHHHHcCCEEEEECCCCChHHHHHHHHHHHHHCCcCcEEEEecCchhHHHHHhcCC--
Confidence 446777778887766553 347789999999888643 333 334444443 22 3333332 23445566554
Q ss_pred CccCCCCceEEEeeccc
Q 019348 304 RKFDISSLKLVGSGAAP 320 (342)
Q Consensus 304 ~~~~l~~lr~~~~gG~~ 320 (342)
.++.+.++|++
T Consensus 214 ------~v~~V~fTGS~ 224 (479)
T cd07116 214 ------RIAKVAFTGET 224 (479)
T ss_pred ------CcCEEEEECCH
Confidence 34556666644
No 487
>cd07144 ALDH_ALD2-YMR170C Saccharomyces cerevisiae aldehyde dehydrogenase 2 (YMR170c)-like. NAD(P)+-dependent Saccharomyces cerevisiae aldehyde dehydrogenase 2 (YMR170c, ALD5, EC=1.2.1.5) and other similar sequences, are present in this CD.
Probab=21.90 E-value=4.6e+02 Score=24.52 Aligned_cols=79 Identities=15% Similarity=0.028 Sum_probs=46.5
Q ss_pred CCeEEEEccchhHHHHHH-HHHHHHhhcCCeEEEccC-CC---HHHHHHHHHhcc-----ceEEEe-cHHHHHHHHcCCC
Q 019348 234 LDHVVLCVLPMFHVFGLS-VILYDQLQKGNCVVSMGK-FD---IEMALRAIEKYR-----VTVWWV-VPPIILALAKNSL 302 (342)
Q Consensus 234 ~~d~~~~~~p~~~~~g~~-~~~~~~l~~G~~~v~~~~-~~---~~~~~~~i~~~~-----~t~~~~-~P~~l~~l~~~~~ 302 (342)
+--++....|+.+...+. ..+..+|.+|.++++-+. .. ...+.+++.+.+ ++++.. ....-..|..++
T Consensus 144 P~GvV~~I~p~N~P~~~~~~~~~~ALaaGN~VV~Kps~~~p~~~~~l~~~~~~aglP~gv~~~v~g~~~~~~~~L~~~~- 222 (484)
T cd07144 144 PYGVCGQIIPWNYPLAMAAWKLAPALAAGNTVVIKPAENTPLSLLYFANLVKEAGFPPGVVNIIPGYGAVAGSALAEHP- 222 (484)
T ss_pred cceEEEEECcCCCHHHHHHHHHHHHHHcCCEEEEECCccchHHHHHHHHHHHHhCcCCCcEEEEecCCchHHHHHhcCC-
Confidence 345777888877665432 347799999999988643 32 355666666653 333333 123455565554
Q ss_pred CCccCCCCceEEEeeccc
Q 019348 303 VRKFDISSLKLVGSGAAP 320 (342)
Q Consensus 303 ~~~~~l~~lr~~~~gG~~ 320 (342)
.++.+.++|+.
T Consensus 223 -------~vd~V~fTGS~ 233 (484)
T cd07144 223 -------DVDKIAFTGST 233 (484)
T ss_pred -------CcCEEEEECcH
Confidence 35566666643
No 488
>TIGR02803 ExbD_1 TonB system transport protein ExbD, group 1. Members of this family are Gram-negative bacterial inner membrane proteins, generally designated ExbD, related to the TolR family modeled by TIGRFAMs TIGR02801. Members always are encoded next to a protein designated ExbB (TIGR02797), related to the TolQ family modeled by TIGRFAMs TIGR02796. ExbD and ExbB together form a proton channel through which they can harness the proton-motive force to energize TonB, which in turn energizes TonB-dependent receptors in the outer membrane. TonB-dependent receptors with known specificity tend to import siderophores or vitamin B12. A TonB system and Tol-Pal system often will co-exist in a single bacterial genome.
Probab=21.78 E-value=2.5e+02 Score=20.35 Aligned_cols=26 Identities=8% Similarity=0.071 Sum_probs=12.4
Q ss_pred CCEEEEECCCCCh---HHHHHHHHHHhCC
Q 019348 79 KDVVLIFAPNSIH---FPICFLGVIAIGA 104 (342)
Q Consensus 79 g~~V~i~~~n~~~---~~~~~lA~~~~G~ 104 (342)
...|.|..+.... .+-.+=.|-.+|.
T Consensus 85 ~~~v~I~aD~~~~~~~vv~v~d~~~~aG~ 113 (122)
T TIGR02803 85 DTTIFFRADKTVDYGDLMKVMNLLRQAGY 113 (122)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHcCC
Confidence 3456666655532 2333344444554
No 489
>PTZ00381 aldehyde dehydrogenase family protein; Provisional
Probab=21.76 E-value=5.1e+02 Score=24.35 Aligned_cols=77 Identities=19% Similarity=0.137 Sum_probs=42.7
Q ss_pred CCeEEEEccchhHHHHHH-HHHHHHhhcCCeEEEccC-CCH---HHHHHHHHhc-c---ceEEEecHHHHHHHHcCCCCC
Q 019348 234 LDHVVLCVLPMFHVFGLS-VILYDQLQKGNCVVSMGK-FDI---EMALRAIEKY-R---VTVWWVVPPIILALAKNSLVR 304 (342)
Q Consensus 234 ~~d~~~~~~p~~~~~g~~-~~~~~~l~~G~~~v~~~~-~~~---~~~~~~i~~~-~---~t~~~~~P~~l~~l~~~~~~~ 304 (342)
+--+++...|+.+...+. ..+..+|.+|.++++=++ ..| ..+.+++.+. . ++++..-+.....|++++
T Consensus 109 PlGVV~iI~PwN~Pl~l~~~~l~~ALaaGN~VIlKPse~tp~t~~~l~~ll~~~lp~~~v~vv~g~~~~~~~l~~~~--- 185 (493)
T PTZ00381 109 PLGVVLVIGAWNYPLNLTLIPLAGAIAAGNTVVLKPSELSPHTSKLMAKLLTKYLDPSYVRVIEGGVEVTTELLKEP--- 185 (493)
T ss_pred cCcEEEEECCCchHHHHHHHHHHHHHHcCCEEEEECCccCHHHHHHHHHHHHHhCCcCEEEEecCCHHHHHHHHhCC---
Confidence 445777778876654442 347888999999888643 332 3344444432 2 233333334455555432
Q ss_pred ccCCCCceEEEeecc
Q 019348 305 KFDISSLKLVGSGAA 319 (342)
Q Consensus 305 ~~~l~~lr~~~~gG~ 319 (342)
++.+.+.|+
T Consensus 186 ------~d~i~FTGS 194 (493)
T PTZ00381 186 ------FDHIFFTGS 194 (493)
T ss_pred ------CCEEEEECC
Confidence 455666663
No 490
>COG1240 ChlD Mg-chelatase subunit ChlD [Coenzyme metabolism]
Probab=21.72 E-value=3.5e+02 Score=22.86 Aligned_cols=62 Identities=11% Similarity=0.048 Sum_probs=47.3
Q ss_pred CcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeEeccCCCCCHHHHHHHhhhcC
Q 019348 52 DESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSN 126 (342)
Q Consensus 52 ~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~ 126 (342)
..++.-..=.+.++..+..|.+--+++.|+|+++.-++.+. -+.++|+.+.+.+...|+...
T Consensus 88 SgSM~~~~Rm~aaKG~~~~lL~dAYq~RdkvavI~F~G~~A-------------~lll~pT~sv~~~~~~L~~l~ 149 (261)
T COG1240 88 SGSMAARRRMAAAKGAALSLLRDAYQRRDKVAVIAFRGEKA-------------ELLLPPTSSVELAERALERLP 149 (261)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHccceEEEEEecCCcc-------------eEEeCCcccHHHHHHHHHhCC
Confidence 55666555566777777777665678899999999887543 357889999999998888875
No 491
>cd07094 ALDH_F21_LactADH-like ALDH subfamily: NAD+-dependent, lactaldehyde dehydrogenase, ALDH family 21 A1, and related proteins. ALDH subfamily which includes Tortula ruralis aldehyde dehydrogenase ALDH21A1 (RNP123), and NAD+-dependent, lactaldehyde dehydrogenase (EC=1.2.1.22) and like sequences.
Probab=21.72 E-value=3.8e+02 Score=24.71 Aligned_cols=78 Identities=18% Similarity=0.078 Sum_probs=45.5
Q ss_pred CCeEEEEccchhHHHHHH-HHHHHHhhcCCeEEEccC-C---CHHHHHHHHHhc--cceEEEecH----HHHHHHHcCCC
Q 019348 234 LDHVVLCVLPMFHVFGLS-VILYDQLQKGNCVVSMGK-F---DIEMALRAIEKY--RVTVWWVVP----PIILALAKNSL 302 (342)
Q Consensus 234 ~~d~~~~~~p~~~~~g~~-~~~~~~l~~G~~~v~~~~-~---~~~~~~~~i~~~--~~t~~~~~P----~~l~~l~~~~~ 302 (342)
+-.+++...|..+...+. ..+..+|.+|.++++-++ . ....+.+++.+. ....+..++ .+-..|++++
T Consensus 123 P~Gvv~~I~p~N~P~~~~~~~~~~AL~aGN~VI~Kps~~~p~~~~~l~~~l~~ag~P~g~~~~v~g~~~~~~~~l~~~~- 201 (453)
T cd07094 123 PVGVVLAITPFNFPLNLVAHKLAPAIATGCPVVLKPASKTPLSALELAKILVEAGVPEGVLQVVTGEREVLGDAFAADE- 201 (453)
T ss_pred ccceEEEECCCccHHHHHHHHHHHHHHcCCEEEEECCCcchHHHHHHHHHHHHcCCCcCcEEEEeCCCchHHHHHhcCC-
Confidence 445667777776664432 357899999999888643 3 335666667664 223333332 3355565553
Q ss_pred CCccCCCCceEEEeecc
Q 019348 303 VRKFDISSLKLVGSGAA 319 (342)
Q Consensus 303 ~~~~~l~~lr~~~~gG~ 319 (342)
.++.+.+.|+
T Consensus 202 -------~v~~V~fTGs 211 (453)
T cd07094 202 -------RVAMLSFTGS 211 (453)
T ss_pred -------CCCEEEEECc
Confidence 3556666663
No 492
>PLN02195 cellulose synthase A
Probab=21.62 E-value=2.2e+02 Score=29.19 Aligned_cols=72 Identities=17% Similarity=0.177 Sum_probs=52.2
Q ss_pred CCCceeecCCCCCCCCCCCCCCHHHHHhhhcccCC-CceEEE-eCCCCcceeHHHHHHHHHHHHHHH---HHcCCCCCC
Q 019348 7 GRDGIYRSLRPPLVLPSDPSFSMVHFLFRNSASYS-SKLALI-DADSDESLSFSQFKSIVIKVSHSF---RHLGITKKD 80 (342)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~p-~~~a~~-~~~~~~~~Ty~~l~~~~~~la~~L---~~~g~~~g~ 80 (342)
|--+++...-.|...|+- .++-..+---|-.+| +|.+.. .+|.+..+||..|.+.++--..++ +++++++..
T Consensus 252 P~vDvFV~TADP~kEPPl--~t~NTVLSiLA~DYP~eKlscYvSDDGgS~LTf~AL~EAa~FA~~WvPFCkK~~IepRa 328 (977)
T PLN02195 252 AAVDFFVSTVDPLKEPPL--ITANTVLSILAVDYPVDKVSCYVSDDGAAMLSFESLVETAEFARKWVPFCKKYSIEPRA 328 (977)
T ss_pred CceeeEeccCCcccCcch--HHHHHHHHHHhhcccccceEEEEecCCchHHHHHHHHHHHHHHHhhcccccccCCCcCC
Confidence 334566777777777765 677777777788898 777764 555579999999998877666666 788887543
No 493
>PRK05638 threonine synthase; Validated
Probab=21.52 E-value=3.2e+02 Score=25.23 Aligned_cols=91 Identities=13% Similarity=0.005 Sum_probs=52.9
Q ss_pred ceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCChHHHHHHHHHHhCCeEeccCCCCCHHHHHHHh
Q 019348 43 KLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQV 122 (342)
Q Consensus 43 ~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l 122 (342)
++.+-....+-+-||++=- ....+...+ +.| .+.| +....+-.-..+...+..+|.-+..+=|...+......+
T Consensus 81 ~l~~K~E~~nPtGSfKdR~-a~~~i~~a~-~~g---~~~v-v~aSsGN~g~alA~~aa~~G~~~~i~vp~~~~~~k~~~~ 154 (442)
T PRK05638 81 NVYIKDETRNPTGSFRDRL-ATVAVSYGL-PYA---ANGF-IVASDGNAAASVAAYSARAGKEAFVVVPRKVDKGKLIQM 154 (442)
T ss_pred eEEEEeCCCCCCCChHHHH-HHHHHHHHH-HcC---CCEE-EEeCCChHHHHHHHHHHHcCCCEEEEEeCCCCHHHHHHH
Confidence 5666655445666666621 112222233 333 2344 335555566666667778887555544544455667788
Q ss_pred hhcCceEEEEcccchhh
Q 019348 123 KDSNPKLVITVPELWDK 139 (342)
Q Consensus 123 ~~~~~~~vi~~~~~~~~ 139 (342)
+..+++++.++....+.
T Consensus 155 ~~~GA~vi~v~~~~~~~ 171 (442)
T PRK05638 155 IAFGAKIIRYGESVDEA 171 (442)
T ss_pred HhcCcEEEEECCCHHHH
Confidence 99999999997654433
No 494
>COG2062 SixA Phosphohistidine phosphatase SixA [Signal transduction mechanisms]
Probab=21.45 E-value=4e+02 Score=20.75 Aligned_cols=90 Identities=13% Similarity=0.082 Sum_probs=51.0
Q ss_pred HhhhcccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCC--ChHHHHHHHHHHhC--CeEec
Q 019348 33 LFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNS--IHFPICFLGVIAIG--AIAST 108 (342)
Q Consensus 33 l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~--~~~~~~~lA~~~~G--~~~v~ 108 (342)
+.++++..++.+.+.|. ++.+|=+-. +.+.++|++|+++|+.+ |+|+. .|-- .+-.-.+...+-.. .++--
T Consensus 6 LmRHgkA~~~~~~~~D~--dR~Lt~~G~-~ea~~~a~~L~~~~~~~-D~VL~-Spa~Ra~QTae~v~~~~~~~~~~~~~~ 80 (163)
T COG2062 6 LMRHGKAEWAAPGIADF--DRPLTERGR-KEAELVAAWLAGQGVEP-DLVLV-SPAVRARQTAEIVAEHLGEKKVEVFEE 80 (163)
T ss_pred EeecccccccCCCCCCc--cCcCCHHHH-HHHHHHHHHHHhcCCCC-CEEEe-ChhHHHHHHHHHHHHhhCcccceeccc
Confidence 34556666655555555 778887665 46889999999999843 44433 2221 12222222222222 33444
Q ss_pred cCCCCCHHHHHHHhhhcCc
Q 019348 109 ANPVYTVSELSKQVKDSNP 127 (342)
Q Consensus 109 l~~~~~~~~l~~~l~~~~~ 127 (342)
+.|...+..+...++....
T Consensus 81 l~p~~d~~~~l~~l~~~~d 99 (163)
T COG2062 81 LLPNGDPGTVLDYLEALGD 99 (163)
T ss_pred cCCCCCHHHHHHHHHHhcc
Confidence 5566677777776666553
No 495
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=21.38 E-value=6e+02 Score=23.38 Aligned_cols=69 Identities=19% Similarity=0.156 Sum_probs=39.2
Q ss_pred CCCEEEEECCCCChHHHHHHHHHHhCCeEeccCCCC----------------CHHHHHHHhhhcCceEEEEcccchhhhh
Q 019348 78 KKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVY----------------TVSELSKQVKDSNPKLVITVPELWDKVK 141 (342)
Q Consensus 78 ~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~----------------~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 141 (342)
.|.+|+|......-+-++-+ +..+|..++.+-... ...++...+++.++++++....-.....
T Consensus 310 ~Gkrvai~~~~~~~~~l~~~-l~elGm~v~~~~~~~~~~~~~~~~~~~~~~~D~~~l~~~i~~~~~dliig~s~~k~~A~ 388 (432)
T TIGR01285 310 GGKKVAIAAEPDLLAAWATF-FTSMGAQIVAAVTTTGSPLLQKLPVETVVIGDLEDLEDLACAAGADLLITNSHGRALAQ 388 (432)
T ss_pred CCCEEEEEcCHHHHHHHHHH-HHHCCCEEEEEEeCCCCHHHHhCCcCcEEeCCHHHHHHHHhhcCCCEEEECcchHHHHH
Confidence 37889998866554444444 568888765554332 2245556666666666666544444444
Q ss_pred ccCCCe
Q 019348 142 DLNLPA 147 (342)
Q Consensus 142 ~~~~~~ 147 (342)
.++.+.
T Consensus 389 ~l~ip~ 394 (432)
T TIGR01285 389 RLALPL 394 (432)
T ss_pred HcCCCE
Confidence 444443
No 496
>PRK09847 gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase; Provisional
Probab=21.30 E-value=5.2e+02 Score=24.27 Aligned_cols=78 Identities=14% Similarity=0.050 Sum_probs=46.1
Q ss_pred CCeEEEEccchhHHHHHHH-HHHHHhhcCCeEEEccC-CC---HHHHHHHHHhcc-----ceEEEec-HHHHHHHHcCCC
Q 019348 234 LDHVVLCVLPMFHVFGLSV-ILYDQLQKGNCVVSMGK-FD---IEMALRAIEKYR-----VTVWWVV-PPIILALAKNSL 302 (342)
Q Consensus 234 ~~d~~~~~~p~~~~~g~~~-~~~~~l~~G~~~v~~~~-~~---~~~~~~~i~~~~-----~t~~~~~-P~~l~~l~~~~~ 302 (342)
+--++....|+.+...+.. .+..+|.+|.++++-+. .. ...+.+++.+.+ ++++... ...-..|..++
T Consensus 157 P~GVv~~I~PwN~P~~~~~~~~~~ALaaGN~VvlKps~~~p~~~~~l~~~~~~aGlP~g~v~~v~g~~~~~~~~L~~~~- 235 (494)
T PRK09847 157 PVGVIAAIVPWNFPLLLTCWKLGPALAAGNSVILKPSEKSPLSAIRLAGLAKEAGLPDGVLNVVTGFGHEAGQALSRHN- 235 (494)
T ss_pred ceeEEEEECCCccHHHHHHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHcCcCcCcEEEEeCCChhHHHHHhcCC-
Confidence 4457888888877665433 36679999999888643 32 345556666542 3344332 23445565543
Q ss_pred CCccCCCCceEEEeecc
Q 019348 303 VRKFDISSLKLVGSGAA 319 (342)
Q Consensus 303 ~~~~~l~~lr~~~~gG~ 319 (342)
.++.+.++|+
T Consensus 236 -------~vd~v~fTGs 245 (494)
T PRK09847 236 -------DIDAIAFTGS 245 (494)
T ss_pred -------CCCEEEEECC
Confidence 3556666664
No 497
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=21.30 E-value=2.5e+02 Score=22.77 Aligned_cols=57 Identities=16% Similarity=0.072 Sum_probs=37.9
Q ss_pred cceEEEecHHHHHHHHcCCCCCccCCCCceEEEeecccCCHHHHHHHHHhCCCCcccc
Q 019348 283 RVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQ 340 (342)
Q Consensus 283 ~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~ 340 (342)
.-.++..+-.+++.+.+--...-.+-+.-..+++||+-+-+...+.|++.|+ .+++.
T Consensus 200 ~~Eif~~v~PV~eKMAeIv~~hie~~~i~dl~lvGGac~~~g~e~~Fe~~l~-l~v~~ 256 (277)
T COG4820 200 GEEIFPVVKPVYEKMAEIVARHIEGQGITDLWLVGGACMQPGVEELFEKQLA-LQVHL 256 (277)
T ss_pred chhcccchhHHHHHHHHHHHHHhccCCCcceEEecccccCccHHHHHHHHhc-ccccc
Confidence 3445555666676666543222223334457889999999999999999986 66654
No 498
>TIGR01238 D1pyr5carbox3 delta-1-pyrroline-5-carboxylate dehydrogenase (PutA C-terminal domain). This model represents one of several related branches of delta-1-pyrroline-5-carboxylate dehydrogenase. Members of this branch are the C-terminal domain of the PutA bifunctional proline dehydrogenase / delta-1-pyrroline-5-carboxylate dehydrogenase.
Probab=21.26 E-value=5e+02 Score=24.47 Aligned_cols=80 Identities=16% Similarity=0.184 Sum_probs=48.0
Q ss_pred CCCeEEEEccchhHHHHHH-HHHHHHhhcCCeEEEccC-CC---HHHHHHHHHhcc--ceEEEecH----HHHHHHHcCC
Q 019348 233 ELDHVVLCVLPMFHVFGLS-VILYDQLQKGNCVVSMGK-FD---IEMALRAIEKYR--VTVWWVVP----PIILALAKNS 301 (342)
Q Consensus 233 ~~~d~~~~~~p~~~~~g~~-~~~~~~l~~G~~~v~~~~-~~---~~~~~~~i~~~~--~t~~~~~P----~~l~~l~~~~ 301 (342)
.+--++....|+.+...+. ..+..+|.+|.++++-+. .. ...+.+++.+.+ ...+.+++ ..-..|+.++
T Consensus 159 ~P~GVV~~I~pwN~P~~~~~~~i~~ALaaGN~VVlKps~~tp~~~~~l~~~~~~aGlP~gvv~~v~g~~~~~~~~l~~~~ 238 (500)
T TIGR01238 159 ESRGVFVCISPWNFPLAIFTGQISAALAAGNTVIAKPAEQTSLIAYRAVELMQEAGFPAGTIQLLPGRGADVGAALTSDP 238 (500)
T ss_pred cCcceEEEECCCchHHHHHHHHHHHHHHcCCEEEEeCCCCccHHHHHHHHHHHHcCCCCCceEEEecCcchHHHHHhcCC
Confidence 3556788888887766552 357899999999888654 32 344555566542 23333332 4455666554
Q ss_pred CCCccCCCCceEEEeeccc
Q 019348 302 LVRKFDISSLKLVGSGAAP 320 (342)
Q Consensus 302 ~~~~~~l~~lr~~~~gG~~ 320 (342)
.++.+.+.|+.
T Consensus 239 --------~v~~V~ftGs~ 249 (500)
T TIGR01238 239 --------RIAGVAFTGST 249 (500)
T ss_pred --------CcCeEEEECCH
Confidence 35556655543
No 499
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=21.08 E-value=6.3e+02 Score=22.95 Aligned_cols=53 Identities=8% Similarity=0.056 Sum_probs=27.7
Q ss_pred CCEEEEECCCCChHHHHHHHHHHhCCeEeccC-CCCCHHHHHHHhhhcCceEEEE
Q 019348 79 KDVVLIFAPNSIHFPICFLGVIAIGAIASTAN-PVYTVSELSKQVKDSNPKLVIT 132 (342)
Q Consensus 79 g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~-~~~~~~~l~~~l~~~~~~~vi~ 132 (342)
|.+|+|..+....+-.+- .+..+|..++.+. +....++...+.+..+...+++
T Consensus 287 gkrv~i~~~~~~~~~la~-~l~elGm~v~~~~~~~~~~~~~~~~~~~~~~~~~v~ 340 (410)
T cd01968 287 GKKAALYTGGVKSWSLVS-ALQDLGMEVVATGTQKGTKEDYERIKELLGEGTVIV 340 (410)
T ss_pred CCEEEEEcCCchHHHHHH-HHHHCCCEEEEEecccCCHHHHHHHHHHhCCCcEEE
Confidence 677887776554444443 4467887766653 2333344444444444343333
No 500
>cd07104 ALDH_BenzADH-like ALDH subfamily: NAD(P)+-dependent benzaldehyde dehydrogenase II, vanillin dehydrogenase, p-hydroxybenzaldehyde dehydrogenase and related proteins. ALDH subfamily which includes the NAD(P)+-dependent, benzaldehyde dehydrogenase II (XylC, BenzADH, EC=1.2.1.28) involved in the oxidation of benzyl alcohol to benzoate; p-hydroxybenzaldehyde dehydrogenase (PchA, HBenzADH) which catalyzes the oxidation of p-hydroxybenzaldehyde to p-hydroxybenzoic acid; vanillin dehydrogenase (Vdh, VaniDH) involved in the metabolism of ferulic acid as seen in Pseudomonas putida KT2440; and other related sequences.
Probab=21.07 E-value=5.9e+02 Score=23.24 Aligned_cols=79 Identities=22% Similarity=0.122 Sum_probs=44.9
Q ss_pred CCeEEEEccchhHHHHH-HHHHHHHhhcCCeEEEccC-CCH----HHHHHHHHhcc--ceEEEecH---H-HHHHHHcCC
Q 019348 234 LDHVVLCVLPMFHVFGL-SVILYDQLQKGNCVVSMGK-FDI----EMALRAIEKYR--VTVWWVVP---P-IILALAKNS 301 (342)
Q Consensus 234 ~~d~~~~~~p~~~~~g~-~~~~~~~l~~G~~~v~~~~-~~~----~~~~~~i~~~~--~t~~~~~P---~-~l~~l~~~~ 301 (342)
+--+++...|..+.... +..+..+|.+|.++++-+. ..| ..+.+++.+.+ ...+..++ . .-..|..++
T Consensus 98 P~GVv~~i~p~N~P~~~~~~~~~~ALaaGN~Vi~Kps~~~p~~~~~~l~~~l~~aGlP~gvv~~v~g~~~~~~~~L~~~~ 177 (431)
T cd07104 98 PLGVVGVISPFNFPLILAMRSVAPALALGNAVVLKPDSRTPVTGGLLIAEIFEEAGLPKGVLNVVPGGGSEIGDALVEHP 177 (431)
T ss_pred eeeeEEEECCCCcHHHHHHHHHHHHHHcCCeEEeeCCCCChHHHHHHHHHHHHHcCCCcccEEEeeCCchhHHHHHhcCC
Confidence 44567777777665443 2357899999999888654 323 23556666642 23333332 2 345555544
Q ss_pred CCCccCCCCceEEEeeccc
Q 019348 302 LVRKFDISSLKLVGSGAAP 320 (342)
Q Consensus 302 ~~~~~~l~~lr~~~~gG~~ 320 (342)
.++.+.++|+.
T Consensus 178 --------~i~~V~ftGs~ 188 (431)
T cd07104 178 --------RVRMISFTGST 188 (431)
T ss_pred --------CCCEEEEECCH
Confidence 35566665533
Done!