BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019349
(342 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4AV8|A Chain A, Kluyveromyces Lactis Hsv2 Complete Loop 6cd
pdb|4AV9|A Chain A, Kluyveromyces Lactis Hsv2
pdb|4EXV|A Chain A, Structure Of Kluyveromyces Lactis Hsv2p
Length = 339
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 55/257 (21%), Positives = 101/257 (39%), Gaps = 26/257 (10%)
Query: 7 SYPVFFVSFNQDNSGFALSTKDGFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGA 66
S P+ FNQD S +ST F I++ + + + + ML+ ++ +A V
Sbjct: 14 SNPIVDYEFNQDQSCLIVSTPKSFDIYNVHPLKRIMSQEMPDAGTIRMLHRTNYIAFVST 73
Query: 67 GEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKRLVIVLREKTYIYDANTLAIL 126
++ L +++ + + ++ + L+++ +V+ + I+
Sbjct: 74 KKE------LLHIWDDVKKQDITRVKLDAAVKDLFLSREFIVVSQGDVISIFKFGNPWNK 127
Query: 127 DTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCE--------IDAH 178
T D G+C F+ L L G + +V L + E + AH
Sbjct: 128 ITEDI--KFGGVCEFANGL----LVYSNEFNLGQI---HVTRLQTDAEQVVGKGVLVKAH 178
Query: 179 QAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQF 238
P+ + L+ G +AT S+ GT+IRVF FRRG ++I + +
Sbjct: 179 ANPVKMVRLNRKGDMVATCSQDGTLIRVFQTDNGVLVREFRRGLDRTSIIDMRWSPDGS- 237
Query: 239 QDILVATSSSGSLHVFS 255
L S +LHVF
Sbjct: 238 --KLAVVSDKWTLHVFE 252
>pdb|3VU4|A Chain A, Crystal Structure Of Kluyvelomyces Marxianus Hsv2
pdb|3VU4|B Chain B, Crystal Structure Of Kluyvelomyces Marxianus Hsv2
Length = 355
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 60/263 (22%), Positives = 100/263 (38%), Gaps = 27/263 (10%)
Query: 7 SYPVFFVSFNQDNSGFALSTKDGFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGA 66
S PV FNQD S LST F+I++ + + S V ML+ ++ +A V
Sbjct: 19 SNPVTDYEFNQDQSCLILSTLKSFEIYNVHPVAHIMSQEMRHLSKVRMLHRTNYVAFVTG 78
Query: 67 GEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKRLVIVLREKTYIYD-ANTLA- 124
++ + +++ + + + + L+++ +V+ + ++ N
Sbjct: 79 VKEV------VHIWDDVKKQDVSRIKVDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKR 132
Query: 125 ILDTIDTVPNLKGLCAFSPSL------------NACFLAVPASTTKGSVLVYNVMELHSH 172
I D I G+C FS L + L S T V L
Sbjct: 133 ITDDI----RFGGVCEFSNGLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKG 188
Query: 173 CEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSF 232
I AH P+ + L+ +AT S+ GTIIRVF + FRRG + + + +
Sbjct: 189 VLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKW 248
Query: 233 GQSMQFQDILVATSSSGSLHVFS 255
L S +LHVF
Sbjct: 249 STD---GSKLAVVSDKWTLHVFE 268
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/98 (21%), Positives = 45/98 (45%), Gaps = 7/98 (7%)
Query: 158 KGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYS 217
KG++ VY + E ++ H P++ + + + +AS+ GT +R++
Sbjct: 226 KGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGT-LRIWHGGNGNSQNC 284
Query: 218 FRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFS 255
F + +I S S+ D +++ S GS+ ++S
Sbjct: 285 FY--GHSQSIVSASW----VGDDKVISCSMDGSVRLWS 316
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 180 APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFR 219
+P +A+ LS N Y+A E+G I+VF +S+ S+ +
Sbjct: 447 SPGSAVSLSQN--YVAVGLEEGNTIQVFKLSDLEVSFDLK 484
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 180 APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFR 219
+P +A+ LS N Y+A E+G I+VF +S+ S+ +
Sbjct: 447 SPGSAVSLSQN--YVAVGLEEGNTIQVFKLSDLEVSFDLK 484
>pdb|3MHZ|A Chain A, 1.7a Structure Of 2-Fluorohistidine Labeled Protective
Antigen
pdb|3Q8F|A Chain A, Crystal Structure Of 2-Fluorohistine Labeled Protective
Antigen (Ph 5.8)
Length = 735
Score = 27.7 bits (60), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 88 LRELNFLTSILAVRLNKKRLVIVLREKTYIYDANTLAI 125
L N T + ++LN K + I++R+K + YD N +A+
Sbjct: 569 LNATNIYTVLDKIKLNAK-MNILIRDKRFXYDRNNIAV 605
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.133 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,067,677
Number of Sequences: 62578
Number of extensions: 340744
Number of successful extensions: 721
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 716
Number of HSP's gapped (non-prelim): 12
length of query: 342
length of database: 14,973,337
effective HSP length: 100
effective length of query: 242
effective length of database: 8,715,537
effective search space: 2109159954
effective search space used: 2109159954
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)