Query 019349
Match_columns 342
No_of_seqs 335 out of 2776
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 08:44:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019349.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019349hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2111 Uncharacterized conser 100.0 1.7E-50 3.7E-55 334.6 33.0 316 7-326 5-328 (346)
2 KOG2110 Uncharacterized conser 100.0 8.8E-49 1.9E-53 330.2 36.2 325 5-339 3-347 (391)
3 KOG0271 Notchless-like WD40 re 100.0 1.8E-37 3.9E-42 262.6 22.9 278 5-318 155-479 (480)
4 KOG0272 U4/U6 small nuclear ri 100.0 1.9E-37 4.2E-42 265.4 21.2 277 4-318 172-458 (459)
5 KOG0271 Notchless-like WD40 re 100.0 1.4E-36 3.1E-41 257.2 25.3 281 4-323 112-442 (480)
6 KOG0286 G-protein beta subunit 100.0 1.2E-32 2.6E-37 226.1 30.5 280 3-318 51-343 (343)
7 KOG0279 G protein beta subunit 100.0 2.8E-32 6E-37 222.6 31.4 286 3-320 11-313 (315)
8 KOG0273 Beta-transducin family 100.0 1.3E-32 2.8E-37 238.8 29.6 276 5-319 233-522 (524)
9 KOG0315 G-protein beta subunit 100.0 2.7E-32 5.8E-37 219.4 26.4 243 5-263 38-294 (311)
10 KOG0291 WD40-repeat-containing 100.0 7.4E-32 1.6E-36 245.7 31.0 298 6-321 306-613 (893)
11 KOG0263 Transcription initiati 100.0 9.9E-33 2.1E-37 253.1 24.1 239 6-261 377-653 (707)
12 KOG0272 U4/U6 small nuclear ri 100.0 3.3E-33 7.2E-38 239.5 18.2 235 4-255 214-458 (459)
13 KOG0284 Polyadenylation factor 100.0 9.3E-33 2E-37 235.8 16.4 278 6-319 95-379 (464)
14 KOG0265 U5 snRNP-specific prot 100.0 1.2E-30 2.5E-35 215.1 26.3 279 1-316 41-334 (338)
15 cd00200 WD40 WD40 domain, foun 100.0 6.2E-29 1.4E-33 216.3 34.6 277 4-318 6-289 (289)
16 KOG0285 Pleiotropic regulator 100.0 1E-29 2.2E-34 214.1 26.2 287 4-322 148-441 (460)
17 PLN00181 protein SPA1-RELATED; 100.0 1.7E-28 3.6E-33 244.2 38.0 286 6-319 482-792 (793)
18 KOG0266 WD40 repeat-containing 100.0 7.5E-29 1.6E-33 230.9 32.6 279 6-320 158-454 (456)
19 KOG0273 Beta-transducin family 100.0 9.8E-30 2.1E-34 220.9 23.9 279 6-321 177-483 (524)
20 KOG0279 G protein beta subunit 100.0 7.8E-29 1.7E-33 202.5 26.9 237 4-258 60-314 (315)
21 KOG0315 G-protein beta subunit 100.0 8.3E-29 1.8E-33 199.4 26.3 267 20-323 11-291 (311)
22 KOG0316 Conserved WD40 repeat- 100.0 9.6E-29 2.1E-33 197.5 24.5 275 5-318 15-298 (307)
23 KOG0295 WD40 repeat-containing 100.0 1.9E-29 4.2E-34 212.8 21.7 277 4-318 105-404 (406)
24 KOG0291 WD40-repeat-containing 100.0 3.8E-28 8.2E-33 221.7 31.7 278 8-321 266-551 (893)
25 KOG0295 WD40 repeat-containing 100.0 3.6E-29 7.8E-34 211.2 23.2 238 4-256 147-405 (406)
26 KOG0318 WD40 repeat stress pro 100.0 8.7E-28 1.9E-32 211.4 32.7 283 3-320 186-560 (603)
27 KOG1407 WD40 repeat protein [F 100.0 2.9E-28 6.2E-33 197.5 23.8 259 4-288 17-284 (313)
28 KOG0276 Vesicle coat complex C 100.0 1.6E-28 3.5E-33 219.9 24.3 243 5-263 11-263 (794)
29 KOG0286 G-protein beta subunit 100.0 2E-27 4.4E-32 195.4 28.6 243 40-319 49-302 (343)
30 KOG0319 WD40-repeat-containing 100.0 3.3E-28 7.1E-33 221.7 24.4 281 7-323 323-622 (775)
31 KOG0643 Translation initiation 100.0 2.1E-27 4.5E-32 193.1 26.1 294 3-322 6-319 (327)
32 KOG0281 Beta-TrCP (transducin 100.0 1.6E-29 3.5E-34 212.2 14.3 280 6-324 196-481 (499)
33 KOG0284 Polyadenylation factor 100.0 4.8E-29 1E-33 213.2 15.3 242 3-260 134-383 (464)
34 KOG1446 Histone H3 (Lys4) meth 100.0 1.1E-25 2.4E-30 187.3 34.4 244 5-263 12-268 (311)
35 KOG0285 Pleiotropic regulator 100.0 7.4E-28 1.6E-32 202.9 21.6 239 45-323 150-392 (460)
36 KOG0263 Transcription initiati 100.0 9.6E-28 2.1E-32 220.4 23.6 203 92-325 449-654 (707)
37 KOG0645 WD40 repeat protein [G 100.0 9.7E-26 2.1E-30 183.8 31.4 282 3-320 10-311 (312)
38 KOG0266 WD40 repeat-containing 100.0 1E-26 2.2E-31 216.6 29.1 242 47-321 160-410 (456)
39 KOG0276 Vesicle coat complex C 100.0 9.6E-27 2.1E-31 208.6 27.4 241 6-262 54-303 (794)
40 KOG0772 Uncharacterized conser 100.0 1.2E-27 2.6E-32 210.1 21.2 291 5-330 165-496 (641)
41 KOG0306 WD40-repeat-containing 100.0 1.4E-26 3.1E-31 211.4 26.4 282 4-321 370-665 (888)
42 KOG0318 WD40 repeat stress pro 100.0 2.3E-25 5E-30 196.2 32.2 286 4-325 56-355 (603)
43 KOG0282 mRNA splicing factor [ 100.0 7E-28 1.5E-32 210.1 15.3 281 3-318 210-503 (503)
44 cd00200 WD40 WD40 domain, foun 100.0 6.5E-25 1.4E-29 190.9 31.8 234 5-255 49-289 (289)
45 KOG0293 WD40 repeat-containing 100.0 2.6E-26 5.6E-31 196.8 21.2 283 4-322 221-515 (519)
46 KOG0281 Beta-TrCP (transducin 99.9 2.8E-27 6E-32 198.9 13.7 235 3-260 233-480 (499)
47 KOG0319 WD40-repeat-containing 99.9 6.9E-26 1.5E-30 206.6 23.6 289 10-335 284-599 (775)
48 KOG0274 Cdc4 and related F-box 99.9 1.8E-25 4E-30 208.4 26.9 275 6-326 207-488 (537)
49 KOG0278 Serine/threonine kinas 99.9 1.3E-26 2.7E-31 187.0 16.3 281 5-325 12-302 (334)
50 KOG0292 Vesicle coat complex C 99.9 5.1E-25 1.1E-29 204.4 28.8 241 5-261 49-325 (1202)
51 KOG0292 Vesicle coat complex C 99.9 1.8E-25 3.8E-30 207.4 25.7 244 4-264 6-287 (1202)
52 KOG0275 Conserved WD40 repeat- 99.9 9.6E-27 2.1E-31 194.1 15.3 254 5-323 211-470 (508)
53 KOG0316 Conserved WD40 repeat- 99.9 2.4E-25 5.1E-30 178.2 22.4 237 45-321 16-258 (307)
54 KOG0283 WD40 repeat-containing 99.9 1.3E-25 2.9E-30 207.9 23.6 240 5-260 265-579 (712)
55 KOG0265 U5 snRNP-specific prot 99.9 2.9E-25 6.2E-30 183.4 22.9 248 42-320 43-296 (338)
56 KOG0288 WD40 repeat protein Ti 99.9 5.3E-26 1.1E-30 194.9 18.8 235 4-254 216-458 (459)
57 KOG0296 Angio-associated migra 99.9 1.7E-24 3.7E-29 183.1 27.6 281 3-321 60-357 (399)
58 KOG0278 Serine/threonine kinas 99.9 5.4E-26 1.2E-30 183.3 16.0 197 5-214 98-301 (334)
59 KOG0293 WD40 repeat-containing 99.9 1.5E-25 3.3E-30 192.1 18.9 238 4-259 266-515 (519)
60 PLN00181 protein SPA1-RELATED; 99.9 1.2E-23 2.6E-28 209.5 35.0 234 7-256 532-792 (793)
61 KOG0289 mRNA splicing factor [ 99.9 2.9E-24 6.3E-29 185.3 25.9 282 7-319 219-505 (506)
62 KOG0288 WD40 repeat protein Ti 99.9 7.7E-26 1.7E-30 193.9 15.5 277 4-318 172-459 (459)
63 KOG0277 Peroxisomal targeting 99.9 1.6E-24 3.5E-29 175.2 22.1 277 8-318 9-307 (311)
64 KOG0282 mRNA splicing factor [ 99.9 6.1E-26 1.3E-30 198.1 14.2 262 44-337 212-485 (503)
65 PTZ00420 coronin; Provisional 99.9 1.8E-23 4E-28 195.8 31.3 223 73-322 52-295 (568)
66 KOG0305 Anaphase promoting com 99.9 5.5E-24 1.2E-28 192.2 26.7 273 11-322 181-463 (484)
67 KOG0310 Conserved WD40 repeat- 99.9 4.6E-24 1E-28 186.6 22.7 272 6-317 25-306 (487)
68 KOG0274 Cdc4 and related F-box 99.9 1.5E-23 3.2E-28 195.7 27.1 240 3-263 245-488 (537)
69 PTZ00421 coronin; Provisional 99.9 1.2E-22 2.5E-27 189.3 32.1 240 7-261 20-294 (493)
70 PTZ00421 coronin; Provisional 99.9 8.7E-23 1.9E-27 190.1 30.2 203 93-323 74-293 (493)
71 KOG0310 Conserved WD40 repeat- 99.9 3.7E-23 8.1E-28 180.9 25.1 235 7-260 68-312 (487)
72 KOG0640 mRNA cleavage stimulat 99.9 2.4E-24 5.2E-29 178.8 16.3 224 4-263 109-341 (430)
73 KOG0647 mRNA export protein (c 99.9 3E-23 6.6E-28 171.6 22.4 230 3-246 68-312 (347)
74 KOG0296 Angio-associated migra 99.9 7.6E-23 1.7E-27 173.2 25.3 278 3-319 102-397 (399)
75 KOG1407 WD40 repeat protein [F 99.9 1.5E-22 3.3E-27 164.4 24.9 235 4-256 61-310 (313)
76 KOG0645 WD40 repeat protein [G 99.9 6.6E-22 1.4E-26 161.5 28.3 232 45-320 13-261 (312)
77 KOG0305 Anaphase promoting com 99.9 4.7E-23 1E-27 186.2 23.8 236 7-259 217-463 (484)
78 KOG0268 Sof1-like rRNA process 99.9 3.6E-24 7.8E-29 181.0 15.4 278 3-321 62-346 (433)
79 KOG0973 Histone transcription 99.9 5.6E-23 1.2E-27 195.2 25.2 244 4-259 66-357 (942)
80 KOG0313 Microtubule binding pr 99.9 1E-22 2.2E-27 173.2 23.6 275 6-320 104-418 (423)
81 KOG2096 WD40 repeat protein [G 99.9 2.3E-22 5E-27 167.6 25.1 282 3-321 82-403 (420)
82 KOG0641 WD40 repeat protein [G 99.9 3E-21 6.6E-26 153.9 30.3 280 6-320 31-349 (350)
83 PTZ00420 coronin; Provisional 99.9 1.3E-21 2.9E-26 183.4 30.9 225 4-236 71-318 (568)
84 KOG0647 mRNA export protein (c 99.9 1.2E-21 2.6E-26 162.2 26.9 239 4-262 24-286 (347)
85 KOG0641 WD40 repeat protein [G 99.9 3E-21 6.5E-26 154.0 27.7 239 6-257 88-349 (350)
86 KOG1273 WD40 repeat protein [G 99.9 5.2E-22 1.1E-26 165.3 23.6 280 10-324 26-326 (405)
87 KOG0306 WD40-repeat-containing 99.9 1.4E-22 3E-27 185.5 22.2 234 8-258 413-665 (888)
88 KOG0308 Conserved WD40 repeat- 99.9 6E-23 1.3E-27 185.2 18.3 233 12-259 29-287 (735)
89 KOG1036 Mitotic spindle checkp 99.9 1.9E-21 4.1E-26 161.6 25.5 243 4-264 10-269 (323)
90 KOG0313 Microtubule binding pr 99.9 1.2E-21 2.7E-26 166.6 23.2 234 4-256 141-417 (423)
91 KOG0269 WD40 repeat-containing 99.9 1.7E-22 3.6E-27 185.6 18.2 240 7-262 39-301 (839)
92 KOG0301 Phospholipase A2-activ 99.9 9.8E-22 2.1E-26 178.6 22.7 271 3-321 10-289 (745)
93 KOG0277 Peroxisomal targeting 99.9 5.2E-22 1.1E-26 160.7 18.1 237 6-256 59-308 (311)
94 KOG1036 Mitotic spindle checkp 99.9 3.5E-21 7.6E-26 160.0 22.7 227 5-247 52-294 (323)
95 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 7.8E-20 1.7E-24 161.6 32.6 237 8-261 31-283 (300)
96 KOG0973 Histone transcription 99.9 1.6E-20 3.5E-25 178.6 28.4 286 7-326 13-361 (942)
97 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 2.3E-19 5.1E-24 158.5 33.7 267 20-323 2-282 (300)
98 KOG0283 WD40 repeat-containing 99.9 8E-21 1.7E-25 176.4 24.7 246 44-324 265-580 (712)
99 KOG0299 U3 snoRNP-associated p 99.9 1.1E-20 2.4E-25 164.5 23.4 240 5-261 140-414 (479)
100 KOG2055 WD40 repeat protein [G 99.9 3.8E-21 8.2E-26 167.4 20.2 237 7-257 257-512 (514)
101 KOG0264 Nucleosome remodeling 99.9 5.9E-21 1.3E-25 166.0 21.4 227 73-320 145-404 (422)
102 KOG0268 Sof1-like rRNA process 99.9 1.5E-21 3.2E-26 165.3 16.0 237 4-261 106-349 (433)
103 KOG1446 Histone H3 (Lys4) meth 99.9 2.7E-19 5.9E-24 149.3 29.0 241 46-321 14-263 (311)
104 KOG0289 mRNA splicing factor [ 99.9 2.4E-20 5.2E-25 161.3 23.4 235 47-318 220-460 (506)
105 KOG1274 WD40 repeat protein [G 99.9 6.8E-20 1.5E-24 171.4 28.2 240 5-259 11-264 (933)
106 KOG4283 Transcription-coupled 99.9 4.6E-20 1E-24 152.5 22.2 200 4-213 40-279 (397)
107 KOG0264 Nucleosome remodeling 99.9 2.7E-20 5.8E-25 161.9 21.6 241 5-258 122-405 (422)
108 KOG0643 Translation initiation 99.9 8.4E-20 1.8E-24 149.0 22.6 241 5-257 50-317 (327)
109 KOG0646 WD40 repeat protein [G 99.9 3.2E-20 6.9E-25 161.9 20.7 270 30-324 20-311 (476)
110 KOG0275 Conserved WD40 repeat- 99.9 8.9E-22 1.9E-26 164.6 10.2 161 95-263 214-384 (508)
111 KOG0650 WD40 repeat nucleolar 99.9 4.7E-20 1E-24 165.3 20.4 290 4-318 397-733 (733)
112 KOG2919 Guanine nucleotide-bin 99.9 2.4E-19 5.2E-24 150.0 23.1 239 9-260 51-330 (406)
113 KOG2048 WD40 repeat protein [G 99.9 1.2E-18 2.5E-23 158.4 29.2 239 6-261 24-279 (691)
114 KOG1274 WD40 repeat protein [G 99.9 3.5E-19 7.7E-24 166.7 26.6 242 44-320 11-262 (933)
115 KOG0639 Transducin-like enhanc 99.9 4.7E-20 1E-24 162.2 19.6 274 5-319 417-703 (705)
116 KOG1539 WD repeat protein [Gen 99.9 2.6E-18 5.7E-23 159.4 31.9 281 4-318 199-646 (910)
117 KOG0308 Conserved WD40 repeat- 99.9 8.5E-21 1.8E-25 171.4 15.1 232 73-337 45-300 (735)
118 KOG0294 WD40 repeat-containing 99.9 3.6E-19 7.7E-24 148.5 23.2 237 3-262 39-286 (362)
119 KOG4283 Transcription-coupled 99.9 2.8E-19 6.2E-24 147.8 22.1 208 42-261 39-280 (397)
120 KOG1332 Vesicle coat complex C 99.9 4.8E-20 1E-24 148.6 16.7 239 4-257 8-286 (299)
121 KOG2106 Uncharacterized conser 99.8 5.4E-18 1.2E-22 149.4 29.8 272 8-326 247-525 (626)
122 KOG0646 WD40 repeat protein [G 99.8 1.1E-19 2.3E-24 158.6 18.4 235 7-258 81-351 (476)
123 KOG2055 WD40 repeat protein [G 99.8 2.2E-18 4.8E-23 150.3 24.7 283 2-320 208-512 (514)
124 KOG0294 WD40 repeat-containing 99.8 1.2E-18 2.5E-23 145.4 21.5 216 73-322 61-283 (362)
125 KOG0300 WD40 repeat-containing 99.8 1.5E-18 3.3E-23 145.0 22.2 286 4-323 145-479 (481)
126 KOG0267 Microtubule severing p 99.8 8.2E-21 1.8E-25 173.3 8.7 211 30-261 16-230 (825)
127 KOG0772 Uncharacterized conser 99.8 7.8E-19 1.7E-23 155.0 20.6 238 4-255 211-485 (641)
128 KOG0640 mRNA cleavage stimulat 99.8 1.1E-18 2.3E-23 145.4 17.8 239 5-256 170-425 (430)
129 KOG0302 Ribosome Assembly prot 99.8 3E-18 6.4E-23 146.1 20.8 181 73-261 173-382 (440)
130 KOG1408 WD40 repeat protein [F 99.8 1E-17 2.2E-22 153.2 25.5 277 9-321 326-714 (1080)
131 KOG2048 WD40 repeat protein [G 99.8 3.7E-17 8.1E-22 148.7 28.9 242 46-324 25-279 (691)
132 KOG0270 WD40 repeat-containing 99.8 2.2E-18 4.8E-23 149.7 19.6 234 18-263 191-455 (463)
133 KOG0299 U3 snoRNP-associated p 99.8 5.3E-18 1.1E-22 147.9 22.0 221 5-245 200-443 (479)
134 KOG1408 WD40 repeat protein [F 99.8 1.3E-18 2.9E-23 158.9 19.1 240 5-258 457-714 (1080)
135 KOG2445 Nuclear pore complex c 99.8 4.6E-17 1E-21 135.6 26.1 241 5-259 11-320 (361)
136 KOG2106 Uncharacterized conser 99.8 3E-17 6.5E-22 144.7 25.8 300 5-322 102-479 (626)
137 KOG0639 Transducin-like enhanc 99.8 3.6E-19 7.8E-24 156.7 13.4 215 74-319 439-662 (705)
138 KOG1332 Vesicle coat complex C 99.8 1.9E-18 4E-23 139.5 15.8 240 52-321 17-287 (299)
139 KOG4328 WD40 protein [Function 99.8 1.2E-17 2.5E-22 145.7 21.8 257 45-331 185-458 (498)
140 KOG1539 WD repeat protein [Gen 99.8 2.2E-16 4.8E-21 146.8 30.6 274 13-325 39-323 (910)
141 KOG0302 Ribosome Assembly prot 99.8 2.8E-18 6.2E-23 146.2 15.9 188 112-324 174-382 (440)
142 KOG0307 Vesicle coat complex C 99.8 1.1E-18 2.4E-23 167.1 14.6 245 5-260 62-330 (1049)
143 KOG0321 WD40 repeat-containing 99.8 2.7E-17 5.9E-22 148.7 21.9 280 11-321 53-392 (720)
144 KOG0300 WD40 repeat-containing 99.8 1.2E-17 2.6E-22 139.7 17.7 179 73-260 168-389 (481)
145 KOG4378 Nuclear protein COP1 [ 99.8 1.5E-17 3.4E-22 146.3 18.9 240 6-262 33-285 (673)
146 KOG0267 Microtubule severing p 99.8 7.4E-19 1.6E-23 160.7 11.0 226 6-248 27-259 (825)
147 KOG1034 Transcriptional repres 99.8 8.7E-17 1.9E-21 135.0 21.2 286 3-319 34-382 (385)
148 KOG4328 WD40 protein [Function 99.8 6.8E-17 1.5E-21 141.0 20.7 241 6-260 185-453 (498)
149 KOG1272 WD40-repeat-containing 99.8 1.5E-18 3.3E-23 151.5 10.3 226 8-255 130-360 (545)
150 KOG0269 WD40 repeat-containing 99.8 1.3E-17 2.8E-22 153.8 16.3 197 97-320 90-296 (839)
151 KOG0301 Phospholipase A2-activ 99.8 1.7E-16 3.6E-21 144.9 22.1 221 13-259 64-290 (745)
152 KOG0307 Vesicle coat complex C 99.8 5.8E-18 1.3E-22 162.2 12.6 223 73-320 88-327 (1049)
153 KOG1188 WD40 repeat protein [G 99.7 1.6E-16 3.4E-21 134.1 18.7 188 73-263 48-248 (376)
154 KOG4378 Nuclear protein COP1 [ 99.7 1.7E-16 3.6E-21 139.9 19.1 267 20-323 4-283 (673)
155 KOG1063 RNA polymerase II elon 99.7 5.5E-15 1.2E-19 135.1 27.2 117 138-259 528-650 (764)
156 KOG2096 WD40 repeat protein [G 99.7 1.7E-15 3.7E-20 126.9 22.0 199 44-259 84-310 (420)
157 PRK11028 6-phosphogluconolacto 99.7 2.4E-14 5.3E-19 128.8 30.9 273 23-325 7-309 (330)
158 KOG0321 WD40 repeat-containing 99.7 6.9E-16 1.5E-20 139.7 20.2 244 5-261 98-395 (720)
159 PRK11028 6-phosphogluconolacto 99.7 2.8E-14 6E-19 128.4 29.5 237 8-258 35-305 (330)
160 KOG1517 Guanine nucleotide bin 99.7 3.6E-15 7.7E-20 142.0 23.6 283 9-320 1066-1381(1387)
161 COG2319 FOG: WD40 repeat [Gene 99.7 4.2E-13 9.2E-18 122.7 35.1 243 4-261 62-318 (466)
162 KOG0290 Conserved WD40 repeat- 99.7 4.5E-15 9.8E-20 122.9 19.4 232 3-248 92-357 (364)
163 KOG0270 WD40 repeat-containing 99.7 1.6E-14 3.4E-19 125.9 23.7 277 11-323 129-452 (463)
164 KOG1963 WD40 repeat protein [G 99.7 2.1E-14 4.6E-19 134.6 25.8 284 13-322 22-377 (792)
165 KOG1538 Uncharacterized conser 99.7 4.2E-15 9E-20 135.4 20.4 268 9-320 14-293 (1081)
166 KOG1063 RNA polymerase II elon 99.7 3.8E-14 8.3E-19 129.7 26.4 286 3-319 50-390 (764)
167 KOG0322 G-protein beta subunit 99.7 4.2E-16 9.1E-21 127.4 12.3 283 2-319 9-322 (323)
168 KOG0303 Actin-binding protein 99.7 1.2E-14 2.7E-19 124.9 20.8 200 93-323 80-297 (472)
169 KOG2445 Nuclear pore complex c 99.7 7.8E-14 1.7E-18 116.5 24.5 259 49-323 16-321 (361)
170 KOG1007 WD repeat protein TSSC 99.7 2.2E-14 4.8E-19 118.8 20.1 241 4-258 60-362 (370)
171 KOG0649 WD40 repeat protein [G 99.7 6.8E-14 1.5E-18 113.3 21.3 162 91-261 59-239 (325)
172 KOG1034 Transcriptional repres 99.7 1.7E-14 3.6E-19 121.4 18.3 161 94-260 38-214 (385)
173 KOG1188 WD40 repeat protein [G 99.6 1.1E-14 2.3E-19 123.2 16.6 185 112-322 49-244 (376)
174 KOG1273 WD40 repeat protein [G 99.6 6.5E-15 1.4E-19 123.3 14.8 162 138-324 26-187 (405)
175 KOG1445 Tumor-specific antigen 99.6 7.6E-15 1.6E-19 133.1 16.2 161 94-262 581-755 (1012)
176 KOG4227 WD40 repeat protein [G 99.6 6.8E-14 1.5E-18 120.4 20.4 298 5-319 54-386 (609)
177 KOG0650 WD40 repeat nucleolar 99.6 7.8E-14 1.7E-18 125.8 20.9 245 40-318 394-678 (733)
178 KOG1517 Guanine nucleotide bin 99.6 6.3E-14 1.4E-18 133.7 21.3 239 6-259 1108-1383(1387)
179 KOG1963 WD40 repeat protein [G 99.6 1.1E-12 2.5E-17 123.2 29.4 288 9-321 207-539 (792)
180 KOG2110 Uncharacterized conser 99.6 1.2E-12 2.6E-17 112.0 24.9 215 76-323 27-251 (391)
181 KOG1524 WD40 repeat-containing 99.6 8.3E-14 1.8E-18 124.2 17.9 262 4-320 11-287 (737)
182 COG2319 FOG: WD40 repeat [Gene 99.6 5.9E-12 1.3E-16 115.1 31.2 236 46-319 65-313 (466)
183 KOG1007 WD repeat protein TSSC 99.6 6.8E-13 1.5E-17 110.1 21.8 176 75-258 93-290 (370)
184 KOG1587 Cytoplasmic dynein int 99.6 1.6E-12 3.4E-17 121.5 25.0 261 30-321 224-517 (555)
185 KOG0771 Prolactin regulatory e 99.6 1.7E-13 3.8E-18 118.9 16.5 199 50-261 148-358 (398)
186 KOG0644 Uncharacterized conser 99.6 1.3E-14 2.8E-19 135.2 10.1 246 5-263 188-474 (1113)
187 KOG2321 WD40 repeat protein [G 99.6 2E-12 4.2E-17 116.4 23.1 276 6-320 50-343 (703)
188 KOG1009 Chromatin assembly com 99.6 4.5E-14 9.8E-19 121.9 12.3 156 137-320 15-195 (434)
189 KOG0303 Actin-binding protein 99.5 1.4E-12 3E-17 112.4 20.4 222 5-236 79-321 (472)
190 KOG0642 Cell-cycle nuclear pro 99.5 1.7E-13 3.6E-18 122.9 14.8 242 3-259 290-563 (577)
191 KOG0771 Prolactin regulatory e 99.5 2.7E-13 5.8E-18 117.8 15.4 190 11-211 148-355 (398)
192 KOG1587 Cytoplasmic dynein int 99.5 1.9E-12 4.1E-17 120.9 22.1 237 6-259 241-518 (555)
193 KOG0649 WD40 repeat protein [G 99.5 1.6E-11 3.6E-16 99.7 23.8 229 3-255 58-314 (325)
194 KOG1240 Protein kinase contain 99.5 1.6E-11 3.5E-16 119.2 26.6 245 6-262 1047-1339(1431)
195 PRK01742 tolB translocation pr 99.5 2.3E-12 4.9E-17 119.9 20.5 212 5-235 201-426 (429)
196 KOG2919 Guanine nucleotide-bin 99.5 7.9E-13 1.7E-17 111.3 15.4 188 10-210 161-367 (406)
197 KOG2394 WD40 protein DMR-N9 [G 99.5 1.7E-12 3.7E-17 116.0 18.3 183 73-260 193-455 (636)
198 KOG4497 Uncharacterized conser 99.5 6.6E-12 1.4E-16 106.1 19.9 185 12-207 13-237 (447)
199 PF08662 eIF2A: Eukaryotic tra 99.5 4.9E-12 1.1E-16 104.3 18.8 111 137-259 61-181 (194)
200 KOG1009 Chromatin assembly com 99.5 6.1E-12 1.3E-16 108.9 19.7 245 3-260 61-375 (434)
201 PRK01742 tolB translocation pr 99.5 6.3E-12 1.4E-16 117.0 21.6 213 74-324 183-405 (429)
202 KOG1272 WD40-repeat-containing 99.5 2.4E-13 5.3E-18 119.3 10.1 193 52-263 135-329 (545)
203 KOG3881 Uncharacterized conser 99.5 8.7E-12 1.9E-16 107.5 18.8 213 9-237 107-344 (412)
204 KOG0290 Conserved WD40 repeat- 99.5 5.8E-12 1.2E-16 104.7 16.9 224 74-322 72-320 (364)
205 KOG2139 WD40 repeat protein [G 99.4 6.8E-12 1.5E-16 107.2 16.9 195 96-321 100-312 (445)
206 KOG1538 Uncharacterized conser 99.4 2E-11 4.2E-16 111.9 19.0 234 4-258 50-294 (1081)
207 KOG1523 Actin-related protein 99.4 4E-11 8.7E-16 101.0 19.3 201 7-260 10-239 (361)
208 KOG3881 Uncharacterized conser 99.4 4.9E-11 1.1E-15 103.0 20.3 242 6-261 54-324 (412)
209 KOG1445 Tumor-specific antigen 99.4 3.5E-12 7.7E-17 116.0 13.5 178 74-260 602-801 (1012)
210 KOG0322 G-protein beta subunit 99.4 1.5E-12 3.3E-17 106.7 10.0 135 72-209 172-322 (323)
211 PRK03629 tolB translocation pr 99.4 2.4E-10 5.1E-15 106.3 25.9 214 30-259 181-408 (429)
212 KOG0974 WD-repeat protein WDR6 99.4 2E-11 4.2E-16 116.9 18.7 188 104-321 99-289 (967)
213 PRK03629 tolB translocation pr 99.4 9.4E-10 2E-14 102.3 29.5 177 74-260 178-366 (429)
214 PF02239 Cytochrom_D1: Cytochr 99.4 6.9E-10 1.5E-14 100.6 27.3 238 11-263 40-353 (369)
215 KOG1524 WD40 repeat-containing 99.4 1.8E-11 3.9E-16 109.5 16.0 199 21-252 77-281 (737)
216 KOG4547 WD40 repeat-containing 99.4 4.8E-10 1.1E-14 101.6 25.3 188 58-261 5-224 (541)
217 KOG0642 Cell-cycle nuclear pro 99.4 8.3E-12 1.8E-16 112.2 12.7 205 3-218 340-569 (577)
218 TIGR02658 TTQ_MADH_Hv methylam 99.4 6.3E-09 1.4E-13 92.6 30.4 235 15-263 53-336 (352)
219 KOG2139 WD40 repeat protein [G 99.3 1.6E-09 3.5E-14 92.9 24.4 285 7-322 98-433 (445)
220 PF08662 eIF2A: Eukaryotic tra 99.3 1.6E-10 3.5E-15 95.3 17.9 130 159-320 37-179 (194)
221 PF02239 Cytochrom_D1: Cytochr 99.3 4.8E-09 1E-13 95.1 29.0 186 24-218 11-210 (369)
222 KOG1240 Protein kinase contain 99.3 2.5E-10 5.4E-15 111.2 21.3 238 73-322 1069-1336(1431)
223 PRK04922 tolB translocation pr 99.3 1.2E-09 2.5E-14 102.0 25.4 177 74-260 183-371 (433)
224 PRK04922 tolB translocation pr 99.3 2.1E-09 4.6E-14 100.3 26.5 214 30-259 186-413 (433)
225 KOG1310 WD40 repeat protein [G 99.3 8.2E-12 1.8E-16 112.0 9.8 139 171-323 42-181 (758)
226 KOG1310 WD40 repeat protein [G 99.3 5.6E-11 1.2E-15 106.7 15.0 223 93-324 49-307 (758)
227 KOG1334 WD40 repeat protein [G 99.3 6.5E-11 1.4E-15 104.9 15.2 285 3-319 138-465 (559)
228 PF10282 Lactonase: Lactonase, 99.3 2.5E-08 5.3E-13 90.2 32.4 238 8-258 37-323 (345)
229 KOG2394 WD40 protein DMR-N9 [G 99.3 1.7E-11 3.8E-16 109.6 11.5 155 112-273 194-378 (636)
230 PRK02889 tolB translocation pr 99.3 2.3E-09 4.9E-14 99.8 25.7 175 74-260 175-363 (427)
231 KOG2111 Uncharacterized conser 99.3 4.9E-09 1.1E-13 88.6 24.7 154 7-168 94-257 (346)
232 KOG2315 Predicted translation 99.3 7.2E-09 1.6E-13 93.6 27.3 276 8-320 35-390 (566)
233 KOG1354 Serine/threonine prote 99.3 4.4E-10 9.6E-15 95.7 18.5 240 8-260 26-362 (433)
234 KOG4227 WD40 repeat protein [G 99.3 4.5E-10 9.7E-15 97.2 18.7 163 93-261 55-229 (609)
235 KOG1523 Actin-related protein 99.3 1.2E-10 2.5E-15 98.3 14.2 157 136-322 11-178 (361)
236 PRK05137 tolB translocation pr 99.3 9E-09 1.9E-13 96.1 27.7 176 74-259 181-368 (435)
237 TIGR03300 assembly_YfgL outer 99.3 4E-09 8.6E-14 96.7 24.9 259 18-318 104-377 (377)
238 KOG2314 Translation initiation 99.2 6.3E-09 1.4E-13 93.9 23.8 238 11-258 214-526 (698)
239 PRK05137 tolB translocation pr 99.2 9.9E-09 2.2E-13 95.8 26.5 216 30-260 184-415 (435)
240 PF10282 Lactonase: Lactonase, 99.2 1.2E-07 2.6E-12 85.7 32.7 273 28-325 13-327 (345)
241 KOG0974 WD-repeat protein WDR6 99.2 5E-10 1.1E-14 107.5 17.4 235 5-260 5-291 (967)
242 TIGR03300 assembly_YfgL outer 99.2 2.8E-08 6E-13 91.2 28.2 258 19-319 65-337 (377)
243 PRK02889 tolB translocation pr 99.2 2.3E-08 5E-13 93.1 27.5 212 30-257 178-403 (427)
244 KOG4547 WD40 repeat-containing 99.2 1.6E-08 3.5E-13 91.9 23.8 184 16-211 2-221 (541)
245 KOG0644 Uncharacterized conser 99.2 1.2E-10 2.7E-15 109.2 9.5 236 48-325 192-473 (1113)
246 TIGR02800 propeller_TolB tol-p 99.1 3.4E-08 7.4E-13 91.8 25.3 176 74-259 169-356 (417)
247 PLN02919 haloacid dehalogenase 99.1 2.2E-07 4.8E-12 95.0 32.6 236 11-260 571-891 (1057)
248 KOG4497 Uncharacterized conser 99.1 2E-09 4.3E-14 91.3 14.3 187 51-255 13-238 (447)
249 PF13360 PQQ_2: PQQ-like domai 99.1 1.7E-07 3.6E-12 80.1 25.8 211 30-261 5-234 (238)
250 KOG1064 RAVE (regulator of V-A 99.1 1.5E-09 3.2E-14 109.5 14.3 168 73-263 2228-2404(2439)
251 PRK04792 tolB translocation pr 99.1 2.7E-08 5.8E-13 93.1 22.0 216 6-234 216-446 (448)
252 COG2706 3-carboxymuconate cycl 99.1 1.2E-06 2.7E-11 75.7 29.7 244 6-259 38-323 (346)
253 PRK00178 tolB translocation pr 99.1 7.5E-08 1.6E-12 89.9 24.2 217 5-234 196-427 (430)
254 PRK00178 tolB translocation pr 99.1 3.2E-07 7E-12 85.7 27.8 175 76-260 180-366 (430)
255 TIGR02800 propeller_TolB tol-p 99.1 1.4E-07 3.1E-12 87.6 25.2 212 30-257 172-397 (417)
256 KOG2321 WD40 repeat protein [G 99.1 9.8E-09 2.1E-13 93.0 16.3 177 74-260 154-346 (703)
257 TIGR02658 TTQ_MADH_Hv methylam 99.0 2E-06 4.3E-11 76.8 29.2 256 28-321 27-331 (352)
258 PRK01029 tolB translocation pr 99.0 3.2E-07 7E-12 85.2 24.0 178 75-261 165-363 (428)
259 COG5354 Uncharacterized protei 99.0 4.1E-07 8.9E-12 81.7 23.1 245 6-259 31-308 (561)
260 KOG2315 Predicted translation 99.0 8.7E-07 1.9E-11 80.5 24.8 232 11-259 129-392 (566)
261 PRK04792 tolB translocation pr 99.0 8.8E-07 1.9E-11 82.9 25.9 212 31-258 201-426 (448)
262 KOG3914 WD repeat protein WDR4 98.9 4.4E-08 9.5E-13 85.3 15.2 101 157-264 130-230 (390)
263 KOG1354 Serine/threonine prote 98.9 4.5E-08 9.7E-13 83.7 14.1 245 47-321 26-360 (433)
264 PF00400 WD40: WD domain, G-be 98.9 4.7E-09 1E-13 62.4 5.9 39 169-208 1-39 (39)
265 PRK01029 tolB translocation pr 98.9 9.4E-07 2E-11 82.1 24.0 198 52-261 190-407 (428)
266 PRK11138 outer membrane biogen 98.9 1.4E-06 3.1E-11 80.3 24.8 222 19-261 69-316 (394)
267 PF13360 PQQ_2: PQQ-like domai 98.9 3.8E-06 8.3E-11 71.6 25.4 211 74-321 2-231 (238)
268 PRK11138 outer membrane biogen 98.9 1.3E-06 2.9E-11 80.5 23.9 259 19-319 120-393 (394)
269 COG2706 3-carboxymuconate cycl 98.9 1.6E-05 3.4E-10 69.0 27.6 220 6-233 87-345 (346)
270 KOG4532 WD40-like repeat conta 98.8 1.1E-06 2.5E-11 72.9 19.7 216 12-237 72-315 (344)
271 PF04762 IKI3: IKI3 family; I 98.8 5.6E-06 1.2E-10 83.5 28.6 279 5-320 73-379 (928)
272 KOG0309 Conserved WD40 repeat- 98.8 7E-08 1.5E-12 90.1 13.7 299 6-322 23-341 (1081)
273 COG4946 Uncharacterized protei 98.8 5.8E-06 1.3E-10 74.0 24.1 206 15-237 274-501 (668)
274 KOG4190 Uncharacterized conser 98.8 1.9E-08 4.1E-13 91.0 8.6 177 73-258 755-949 (1034)
275 KOG1064 RAVE (regulator of V-A 98.8 4.8E-08 1E-12 99.0 11.8 187 95-322 2209-2400(2439)
276 KOG1334 WD40 repeat protein [G 98.8 2.4E-07 5.2E-12 82.7 14.0 252 45-320 141-424 (559)
277 KOG1409 Uncharacterized conser 98.8 5.9E-07 1.3E-11 77.0 15.8 193 7-212 68-272 (404)
278 COG5170 CDC55 Serine/threonine 98.7 5.2E-07 1.1E-11 76.4 14.8 282 6-322 25-369 (460)
279 KOG4714 Nucleoporin [Nuclear s 98.7 4E-07 8.7E-12 75.2 13.5 96 112-211 158-255 (319)
280 PLN02919 haloacid dehalogenase 98.7 3.4E-05 7.4E-10 79.3 29.3 234 73-323 588-891 (1057)
281 PF08450 SGL: SMP-30/Gluconola 98.7 0.00014 3E-09 62.5 28.9 214 12-246 4-244 (246)
282 PF04762 IKI3: IKI3 family; I 98.7 3.3E-05 7.1E-10 78.1 27.5 300 6-323 119-459 (928)
283 KOG2314 Translation initiation 98.7 5.9E-06 1.3E-10 75.2 19.6 235 8-258 250-574 (698)
284 COG5354 Uncharacterized protei 98.6 2.7E-05 6E-10 70.3 23.1 233 7-260 71-351 (561)
285 KOG4532 WD40-like repeat conta 98.6 1.5E-05 3.3E-10 66.4 19.8 184 73-263 92-288 (344)
286 KOG0280 Uncharacterized conser 98.6 6.9E-06 1.5E-10 69.2 17.8 142 112-259 94-243 (339)
287 COG4946 Uncharacterized protei 98.6 5.2E-05 1.1E-09 68.0 23.1 116 5-127 357-483 (668)
288 PRK04043 tolB translocation pr 98.6 5.5E-05 1.2E-09 70.1 24.4 191 9-210 189-400 (419)
289 KOG1275 PAB-dependent poly(A) 98.5 1.4E-06 3E-11 83.5 12.5 195 100-325 143-346 (1118)
290 PF00400 WD40: WD domain, G-be 98.5 6.2E-07 1.3E-11 53.1 6.0 39 212-255 1-39 (39)
291 KOG2041 WD40 repeat protein [G 98.5 2.8E-05 6.1E-10 73.0 19.4 223 6-248 13-279 (1189)
292 PF15492 Nbas_N: Neuroblastoma 98.5 0.00013 2.8E-09 61.6 21.6 199 13-220 3-269 (282)
293 KOG2695 WD40 repeat protein [G 98.5 5.3E-07 1.1E-11 77.4 7.3 143 108-261 229-380 (425)
294 KOG0280 Uncharacterized conser 98.5 2.7E-05 5.9E-10 65.7 17.1 179 74-261 94-288 (339)
295 KOG4190 Uncharacterized conser 98.4 8.5E-07 1.9E-11 80.5 8.7 231 5-255 733-986 (1034)
296 KOG2695 WD40 repeat protein [G 98.4 1.5E-06 3.2E-11 74.7 9.3 150 19-177 225-386 (425)
297 PRK04043 tolB translocation pr 98.4 0.0008 1.7E-08 62.4 28.2 194 49-259 190-402 (419)
298 KOG1832 HIV-1 Vpr-binding prot 98.4 2.2E-07 4.8E-12 88.5 4.4 207 5-237 1099-1314(1516)
299 KOG1409 Uncharacterized conser 98.4 1.6E-05 3.4E-10 68.5 14.9 187 106-322 38-272 (404)
300 PF11768 DUF3312: Protein of u 98.4 2E-05 4.4E-10 72.7 16.7 75 177-259 257-331 (545)
301 KOG2041 WD40 repeat protein [G 98.4 1.9E-06 4.1E-11 80.5 9.3 122 133-260 12-148 (1189)
302 cd00216 PQQ_DH Dehydrogenases 98.4 0.00069 1.5E-08 64.3 26.6 191 21-219 63-328 (488)
303 KOG1920 IkappaB kinase complex 98.3 0.00041 8.9E-09 69.1 24.6 275 7-320 68-365 (1265)
304 PF06433 Me-amine-dh_H: Methyl 98.3 0.00057 1.2E-08 60.1 22.6 222 29-263 18-326 (342)
305 PF07433 DUF1513: Protein of u 98.3 0.0019 4.2E-08 56.1 27.6 231 7-250 4-278 (305)
306 KOG0882 Cyclophilin-related pe 98.3 1.2E-05 2.5E-10 71.6 11.2 185 73-262 28-236 (558)
307 KOG3914 WD repeat protein WDR4 98.3 1.6E-05 3.6E-10 69.6 11.9 80 136-219 152-232 (390)
308 PF03178 CPSF_A: CPSF A subuni 98.2 0.0012 2.5E-08 59.2 24.2 173 75-258 2-203 (321)
309 PF08450 SGL: SMP-30/Gluconola 98.2 0.0025 5.5E-08 54.6 28.5 184 58-257 11-213 (246)
310 PF04053 Coatomer_WDAD: Coatom 98.2 0.00093 2E-08 62.0 23.0 219 7-258 32-263 (443)
311 PF03178 CPSF_A: CPSF A subuni 98.2 0.002 4.4E-08 57.7 24.6 174 75-254 62-262 (321)
312 PF07433 DUF1513: Protein of u 98.2 0.0016 3.4E-08 56.7 22.5 184 12-202 55-278 (305)
313 KOG1275 PAB-dependent poly(A) 98.2 6.3E-05 1.4E-09 72.5 15.0 175 23-209 152-341 (1118)
314 cd00216 PQQ_DH Dehydrogenases 98.2 0.0046 1E-07 58.7 27.4 229 20-261 111-428 (488)
315 KOG1912 WD40 repeat protein [G 98.2 0.00028 6E-09 67.1 18.4 237 7-258 15-305 (1062)
316 KOG1912 WD40 repeat protein [G 98.2 3.8E-05 8.2E-10 72.8 12.7 124 129-261 9-147 (1062)
317 PF00780 CNH: CNH domain; Int 98.1 0.0028 6.1E-08 55.3 24.0 215 17-261 5-259 (275)
318 KOG4714 Nucleoporin [Nuclear s 98.1 3.3E-05 7.3E-10 64.1 10.5 144 149-320 103-254 (319)
319 KOG0309 Conserved WD40 repeat- 98.1 2.6E-05 5.7E-10 73.4 11.0 199 47-262 25-237 (1081)
320 PF06433 Me-amine-dh_H: Methyl 98.1 0.0042 9.1E-08 54.8 23.1 59 159-219 269-329 (342)
321 PF15492 Nbas_N: Neuroblastoma 98.1 0.0054 1.2E-07 52.1 24.5 159 96-261 45-263 (282)
322 KOG4649 PQQ (pyrrolo-quinoline 98.0 0.0053 1.2E-07 51.5 23.9 103 19-129 23-131 (354)
323 KOG2066 Vacuolar assembly/sort 98.0 0.00021 4.5E-09 68.2 15.5 144 96-261 41-191 (846)
324 PRK02888 nitrous-oxide reducta 98.0 0.0085 1.8E-07 57.1 25.9 220 14-247 199-451 (635)
325 KOG2395 Protein involved in va 98.0 0.00022 4.7E-09 65.2 14.4 144 56-210 343-500 (644)
326 KOG2114 Vacuolar assembly/sort 98.0 0.002 4.4E-08 62.2 21.3 201 14-221 30-254 (933)
327 PF08553 VID27: VID27 cytoplas 98.0 0.00095 2.1E-08 65.5 19.7 133 112-257 503-647 (794)
328 PF08553 VID27: VID27 cytoplas 98.0 0.0018 3.9E-08 63.7 20.7 132 73-209 502-646 (794)
329 KOG1645 RING-finger-containing 97.9 3.5E-05 7.6E-10 67.7 7.7 96 161-262 175-271 (463)
330 PRK02888 nitrous-oxide reducta 97.9 0.0071 1.5E-07 57.6 23.0 168 74-258 214-405 (635)
331 PF02897 Peptidase_S9_N: Proly 97.9 0.02 4.3E-07 53.3 28.4 245 10-260 126-407 (414)
332 PF05096 Glu_cyclase_2: Glutam 97.9 0.012 2.7E-07 50.1 22.1 179 11-198 48-249 (264)
333 smart00320 WD40 WD40 repeats. 97.9 5.2E-05 1.1E-09 43.4 5.5 38 170-208 3-40 (40)
334 COG5170 CDC55 Serine/threonine 97.8 0.00021 4.4E-09 61.0 10.0 155 94-255 172-365 (460)
335 PF05096 Glu_cyclase_2: Glutam 97.8 0.018 3.8E-07 49.2 23.3 162 73-246 66-249 (264)
336 PF11768 DUF3312: Protein of u 97.8 0.0013 2.8E-08 61.1 15.4 93 115-212 238-331 (545)
337 KOG1920 IkappaB kinase complex 97.7 0.0041 8.9E-08 62.3 19.1 198 6-212 108-324 (1265)
338 PF04841 Vps16_N: Vps16, N-ter 97.7 0.039 8.5E-07 51.1 24.6 217 12-255 33-285 (410)
339 PF04053 Coatomer_WDAD: Coatom 97.7 0.0023 5.1E-08 59.4 16.3 212 51-323 37-265 (443)
340 KOG0882 Cyclophilin-related pe 97.6 0.0019 4.1E-08 58.0 13.4 235 7-254 53-369 (558)
341 KOG2066 Vacuolar assembly/sort 97.6 0.012 2.7E-07 56.5 19.2 178 10-211 42-234 (846)
342 KOG1832 HIV-1 Vpr-binding prot 97.6 0.00021 4.5E-09 69.0 7.5 167 136-315 1102-1316(1516)
343 PF00780 CNH: CNH domain; Int 97.5 0.052 1.1E-06 47.3 24.0 193 9-219 37-264 (275)
344 KOG4640 Anaphase-promoting com 97.5 0.0007 1.5E-08 63.1 9.3 93 137-234 22-115 (665)
345 COG3386 Gluconolactonase [Carb 97.4 0.082 1.8E-06 46.8 21.9 180 73-257 45-243 (307)
346 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.4 0.15 3.2E-06 49.0 28.9 188 20-215 70-338 (527)
347 KOG1645 RING-finger-containing 97.3 0.035 7.5E-07 49.5 17.6 240 5-257 191-461 (463)
348 COG0823 TolB Periplasmic compo 97.3 0.027 5.8E-07 52.3 17.0 155 75-237 218-382 (425)
349 KOG2114 Vacuolar assembly/sort 97.2 0.15 3.3E-06 49.9 22.0 191 50-259 27-245 (933)
350 KOG3617 WD40 and TPR repeat-co 97.2 0.0021 4.6E-08 62.1 9.2 92 112-210 40-131 (1416)
351 KOG2079 Vacuolar assembly/sort 97.2 0.0018 3.8E-08 64.1 8.9 102 148-257 100-203 (1206)
352 PF04841 Vps16_N: Vps16, N-ter 97.2 0.21 4.5E-06 46.4 23.6 168 76-259 62-248 (410)
353 smart00320 WD40 WD40 repeats. 97.1 0.0017 3.7E-08 36.6 5.4 29 224-255 12-40 (40)
354 KOG4640 Anaphase-promoting com 97.1 0.0039 8.4E-08 58.4 9.4 77 180-263 21-98 (665)
355 KOG3621 WD40 repeat-containing 97.1 0.0048 1E-07 58.5 10.1 115 136-258 36-155 (726)
356 COG3391 Uncharacterized conser 97.0 0.26 5.6E-06 45.3 26.2 222 10-237 76-311 (381)
357 COG3391 Uncharacterized conser 97.0 0.26 5.7E-06 45.2 28.8 178 73-261 94-287 (381)
358 KOG4649 PQQ (pyrrolo-quinoline 97.0 0.085 1.8E-06 44.5 15.8 139 56-204 20-160 (354)
359 PF08596 Lgl_C: Lethal giant l 96.9 0.13 2.8E-06 47.3 18.0 185 7-200 86-327 (395)
360 PF06977 SdiA-regulated: SdiA- 96.9 0.23 4.9E-06 42.5 21.1 156 95-257 22-201 (248)
361 COG3490 Uncharacterized protei 96.7 0.17 3.8E-06 43.3 15.6 153 83-237 56-238 (366)
362 PF12894 Apc4_WD40: Anaphase-p 96.7 0.008 1.7E-07 36.8 5.6 31 224-257 11-41 (47)
363 COG0823 TolB Periplasmic compo 96.7 0.25 5.4E-06 45.9 17.9 172 75-258 173-359 (425)
364 PF12894 Apc4_WD40: Anaphase-p 96.6 0.0067 1.5E-07 37.1 5.0 35 179-215 11-45 (47)
365 KOG1008 Uncharacterized conser 96.6 0.00092 2E-08 62.5 1.5 197 47-258 57-276 (783)
366 PF06977 SdiA-regulated: SdiA- 96.6 0.39 8.6E-06 41.1 25.8 193 47-254 22-247 (248)
367 COG3386 Gluconolactonase [Carb 96.6 0.49 1.1E-05 41.9 24.6 217 14-248 31-276 (307)
368 COG3823 Glutamine cyclotransfe 96.5 0.12 2.5E-06 42.3 12.5 94 30-129 70-166 (262)
369 KOG1897 Damage-specific DNA bi 96.5 1.1 2.5E-05 44.8 26.6 173 75-258 750-943 (1096)
370 KOG2395 Protein involved in va 96.4 0.26 5.7E-06 45.8 16.0 135 113-257 356-500 (644)
371 PF08596 Lgl_C: Lethal giant l 96.4 0.064 1.4E-06 49.3 12.5 85 171-257 78-173 (395)
372 TIGR03075 PQQ_enz_alc_DH PQQ-d 96.4 0.95 2.1E-05 43.5 27.6 230 21-261 122-494 (527)
373 PF14870 PSII_BNR: Photosynthe 96.4 0.63 1.4E-05 41.1 27.5 228 5-251 14-255 (302)
374 KOG1008 Uncharacterized conser 96.4 0.00048 1E-08 64.3 -1.7 155 4-167 99-275 (783)
375 KOG3621 WD40 repeat-containing 96.3 0.019 4.1E-07 54.6 8.4 124 178-321 32-155 (726)
376 PRK13616 lipoprotein LpqB; Pro 96.3 0.73 1.6E-05 44.8 19.3 111 139-256 353-475 (591)
377 PF14783 BBS2_Mid: Ciliary BBS 96.2 0.31 6.7E-06 35.8 14.5 101 138-252 5-109 (111)
378 PF14783 BBS2_Mid: Ciliary BBS 96.0 0.38 8.3E-06 35.3 14.6 96 56-162 12-109 (111)
379 PRK10115 protease 2; Provision 96.0 1.9 4.1E-05 43.0 29.7 243 9-259 128-396 (686)
380 COG3490 Uncharacterized protei 96.0 0.93 2E-05 39.1 16.7 69 179-256 279-347 (366)
381 PF10168 Nup88: Nuclear pore c 96.0 1 2.2E-05 44.8 18.6 80 181-262 86-184 (717)
382 KOG3617 WD40 and TPR repeat-co 95.9 0.027 5.8E-07 54.8 7.1 107 142-258 22-132 (1416)
383 KOG2444 WD40 repeat protein [G 95.7 0.035 7.5E-07 45.9 6.4 100 108-211 75-178 (238)
384 KOG1897 Damage-specific DNA bi 95.6 2.9 6.4E-05 42.1 28.7 229 72-327 379-620 (1096)
385 PF08728 CRT10: CRT10; InterP 95.6 1.5 3.2E-05 43.1 17.7 159 93-256 39-245 (717)
386 PF10313 DUF2415: Uncharacteri 95.4 0.059 1.3E-06 32.0 4.9 34 226-259 2-35 (43)
387 PF00930 DPPIV_N: Dipeptidyl p 95.3 0.089 1.9E-06 47.8 8.4 93 158-256 22-130 (353)
388 COG5167 VID27 Protein involved 95.2 0.8 1.7E-05 42.6 13.8 142 57-210 478-632 (776)
389 KOG2079 Vacuolar assembly/sort 94.9 0.079 1.7E-06 53.0 7.0 70 189-263 97-166 (1206)
390 KOG2444 WD40 repeat protein [G 94.9 0.14 3.1E-06 42.3 7.4 106 149-261 72-181 (238)
391 KOG1916 Nuclear protein, conta 94.8 0.047 1E-06 53.6 5.0 160 93-257 131-323 (1283)
392 PF00930 DPPIV_N: Dipeptidyl p 94.8 3.1 6.8E-05 37.7 24.6 232 7-246 42-346 (353)
393 PRK13616 lipoprotein LpqB; Pro 94.6 1.3 2.8E-05 43.1 14.4 110 138-257 399-525 (591)
394 PF05694 SBP56: 56kDa selenium 94.4 4.2 9E-05 37.5 26.4 196 59-263 88-348 (461)
395 COG3823 Glutamine cyclotransfe 94.2 2.7 5.9E-05 34.6 14.1 156 73-237 66-241 (262)
396 PF12234 Rav1p_C: RAVE protein 94.1 3 6.6E-05 40.6 15.6 72 180-256 30-103 (631)
397 PF15390 DUF4613: Domain of un 93.8 4 8.7E-05 38.9 15.1 144 95-257 20-186 (671)
398 PHA03098 kelch-like protein; P 93.8 6.7 0.00015 37.8 19.5 190 59-259 295-513 (534)
399 PHA02713 hypothetical protein; 93.8 7 0.00015 38.0 21.3 189 58-259 303-535 (557)
400 TIGR03074 PQQ_membr_DH membran 93.2 11 0.00023 38.2 23.6 145 73-218 268-485 (764)
401 PF12234 Rav1p_C: RAVE protein 93.0 5.2 0.00011 39.0 15.1 94 157-256 49-155 (631)
402 PF02333 Phytase: Phytase; In 92.9 7.2 0.00016 35.6 23.6 180 73-259 76-292 (381)
403 TIGR03074 PQQ_membr_DH membran 92.8 12 0.00026 37.8 22.9 113 104-220 194-354 (764)
404 PF05694 SBP56: 56kDa selenium 92.7 8.2 0.00018 35.7 23.6 192 18-212 86-344 (461)
405 PF14583 Pectate_lyase22: Olig 92.6 8 0.00017 35.3 26.4 242 12-258 85-382 (386)
406 PF03022 MRJP: Major royal jel 92.6 6.9 0.00015 34.4 16.0 72 182-260 130-218 (287)
407 PF10313 DUF2415: Uncharacteri 92.5 0.55 1.2E-05 27.9 4.9 31 180-211 1-34 (43)
408 PHA02713 hypothetical protein; 92.4 11 0.00025 36.6 18.6 123 75-201 272-409 (557)
409 PF07569 Hira: TUP1-like enhan 92.0 1 2.2E-05 37.9 8.1 30 54-90 18-47 (219)
410 TIGR02276 beta_rpt_yvtn 40-res 91.8 1.4 3E-05 25.6 6.5 33 189-221 1-33 (42)
411 COG5276 Uncharacterized conser 91.4 9.2 0.0002 33.4 19.8 157 86-260 78-244 (370)
412 PF14727 PHTB1_N: PTHB1 N-term 90.8 14 0.0003 34.4 24.3 130 73-208 45-202 (418)
413 KOG4441 Proteins containing BT 90.5 18 0.00039 35.3 17.9 186 59-259 285-501 (571)
414 PF10647 Gmad1: Lipoprotein Lp 90.5 11 0.00023 32.5 14.6 115 138-260 26-147 (253)
415 KOG4460 Nuclear pore complex, 90.5 6.6 0.00014 37.0 12.1 79 181-261 105-202 (741)
416 PF14761 HPS3_N: Hermansky-Pud 90.4 1.9 4.1E-05 35.7 7.9 42 158-200 37-80 (215)
417 smart00036 CNH Domain found in 90.4 12 0.00027 33.1 23.4 62 16-83 10-73 (302)
418 KOG2280 Vacuolar assembly/sort 90.3 20 0.00044 35.4 16.4 159 50-220 85-256 (829)
419 PF14870 PSII_BNR: Photosynthe 89.9 13 0.00029 32.8 21.6 145 96-255 63-213 (302)
420 PF08728 CRT10: CRT10; InterP 89.7 23 0.0005 35.2 16.3 72 181-259 102-197 (717)
421 PF14655 RAB3GAP2_N: Rab3 GTPa 89.4 4.1 8.8E-05 37.7 10.1 80 138-220 310-408 (415)
422 TIGR02276 beta_rpt_yvtn 40-res 89.1 2.4 5.2E-05 24.6 5.9 40 146-187 2-41 (42)
423 PF14655 RAB3GAP2_N: Rab3 GTPa 88.8 4.9 0.00011 37.2 10.2 42 177-219 305-346 (415)
424 PF14781 BBS2_N: Ciliary BBSom 88.8 8.9 0.00019 29.2 13.8 97 74-172 19-130 (136)
425 KOG1900 Nuclear pore complex, 88.7 9.3 0.0002 39.9 12.7 132 74-211 98-273 (1311)
426 PF07569 Hira: TUP1-like enhan 88.7 3.6 7.7E-05 34.6 8.6 67 187-258 18-96 (219)
427 PF14781 BBS2_N: Ciliary BBSom 88.4 9.4 0.0002 29.1 12.6 120 185-333 4-135 (136)
428 PHA03098 kelch-like protein; P 88.4 25 0.00054 33.9 17.7 150 59-213 343-514 (534)
429 KOG1898 Splicing factor 3b, su 88.3 33 0.00072 35.3 16.1 137 114-259 854-1006(1205)
430 KOG1898 Splicing factor 3b, su 88.0 35 0.00076 35.2 18.9 172 76-259 854-1050(1205)
431 KOG2109 WD40 repeat protein [G 87.9 0.44 9.5E-06 45.5 2.8 85 161-250 297-391 (788)
432 PRK13684 Ycf48-like protein; P 87.6 21 0.00045 32.2 18.5 148 96-255 174-329 (334)
433 TIGR02604 Piru_Ver_Nterm putat 87.0 24 0.00052 32.2 14.6 61 179-246 123-202 (367)
434 KOG4499 Ca2+-binding protein R 87.0 18 0.00038 30.6 15.3 44 144-189 220-263 (310)
435 PF10214 Rrn6: RNA polymerase 86.8 39 0.00084 34.4 18.1 109 6-122 144-277 (765)
436 PF11715 Nup160: Nucleoporin N 86.2 4.1 9E-05 39.4 8.8 32 227-261 217-252 (547)
437 PF02897 Peptidase_S9_N: Proly 86.1 28 0.00061 32.2 25.2 197 52-257 129-357 (414)
438 KOG3630 Nuclear pore complex, 85.5 17 0.00037 37.6 12.3 84 157-246 176-262 (1405)
439 PF03022 MRJP: Major royal jel 85.4 25 0.00054 30.9 20.8 159 74-237 33-248 (287)
440 KOG1900 Nuclear pore complex, 85.2 55 0.0012 34.7 16.0 146 106-259 92-274 (1311)
441 PF02333 Phytase: Phytase; In 84.4 20 0.00044 32.8 11.5 134 189-338 66-207 (381)
442 PF08801 Nucleoporin_N: Nup133 84.0 36 0.00078 31.7 13.6 29 227-258 192-220 (422)
443 KOG3611 Semaphorins [Signal tr 84.0 13 0.00029 37.1 11.0 72 179-253 407-489 (737)
444 PF12657 TFIIIC_delta: Transcr 83.2 7.6 0.00017 31.2 7.7 29 227-260 7-35 (173)
445 PF07676 PD40: WD40-like Beta 82.6 4.9 0.00011 22.9 4.8 22 179-200 8-29 (39)
446 COG3204 Uncharacterized protei 81.8 35 0.00076 29.9 18.3 159 95-259 86-265 (316)
447 PF14761 HPS3_N: Hermansky-Pud 81.4 30 0.00065 28.8 16.8 151 96-257 19-214 (215)
448 PF14157 YmzC: YmzC-like prote 81.3 6.3 0.00014 25.4 5.0 31 303-336 30-60 (63)
449 PF03088 Str_synth: Strictosid 80.8 9.6 0.00021 26.9 6.5 50 157-207 35-85 (89)
450 PF11715 Nup160: Nucleoporin N 80.5 7.8 0.00017 37.5 8.1 37 181-218 216-256 (547)
451 KOG2247 WD40 repeat-containing 79.5 0.26 5.7E-06 45.4 -2.2 120 74-200 55-179 (615)
452 PF07995 GSDH: Glucose / Sorbo 79.1 48 0.001 29.8 13.1 103 139-249 5-135 (331)
453 PF10214 Rrn6: RNA polymerase 78.8 80 0.0017 32.2 22.7 161 92-260 77-279 (765)
454 KOG4441 Proteins containing BT 78.2 71 0.0015 31.2 21.0 229 18-258 284-547 (571)
455 KOG1916 Nuclear protein, conta 78.0 1.5 3.3E-05 43.7 2.2 94 158-257 152-265 (1283)
456 PF10168 Nup88: Nuclear pore c 77.9 82 0.0018 31.8 14.8 73 137-213 86-182 (717)
457 KOG2377 Uncharacterized conser 76.8 66 0.0014 30.1 12.4 115 94-212 66-187 (657)
458 PF14583 Pectate_lyase22: Olig 76.7 62 0.0013 29.7 18.1 199 34-237 16-250 (386)
459 PF05935 Arylsulfotrans: Aryls 76.2 73 0.0016 30.3 13.9 133 114-260 129-304 (477)
460 COG5167 VID27 Protein involved 75.7 75 0.0016 30.2 14.6 102 145-255 477-589 (776)
461 PF10395 Utp8: Utp8 family; I 75.2 90 0.002 30.9 17.5 159 7-172 129-310 (670)
462 KOG4499 Ca2+-binding protein R 75.1 51 0.0011 28.0 21.2 101 140-246 162-273 (310)
463 COG3204 Uncharacterized protei 74.9 58 0.0013 28.6 20.5 192 48-254 87-309 (316)
464 COG4257 Vgb Streptogramin lyas 74.7 57 0.0012 28.4 12.6 114 138-259 64-188 (353)
465 PF12657 TFIIIC_delta: Transcr 74.3 33 0.00072 27.5 8.9 33 226-258 87-122 (173)
466 PF09826 Beta_propel: Beta pro 73.7 89 0.0019 30.2 28.2 101 17-118 20-144 (521)
467 PF12341 DUF3639: Protein of u 73.3 9.8 0.00021 20.1 3.6 25 226-255 3-27 (27)
468 PLN00033 photosystem II stabil 72.8 80 0.0017 29.3 29.6 105 140-255 243-354 (398)
469 KOG2377 Uncharacterized conser 72.4 41 0.0009 31.4 9.6 93 159-257 43-140 (657)
470 PF07995 GSDH: Glucose / Sorbo 72.2 74 0.0016 28.6 16.6 104 96-200 3-134 (331)
471 PF03088 Str_synth: Strictosid 71.0 34 0.00073 24.1 8.5 47 200-253 36-83 (89)
472 KOG2109 WD40 repeat protein [G 70.2 5.2 0.00011 38.6 3.6 83 171-256 484-575 (788)
473 COG1520 FOG: WD40-like repeat 68.2 95 0.0021 28.2 17.5 180 113-326 33-221 (370)
474 KOG1983 Tomosyn and related SN 66.7 1.8E+02 0.0038 30.8 19.9 74 176-261 195-268 (993)
475 KOG4659 Uncharacterized conser 66.1 2E+02 0.0043 31.1 23.5 37 183-219 596-632 (1899)
476 KOG1896 mRNA cleavage and poly 65.9 1.9E+02 0.0041 30.8 19.1 177 76-259 1005-1215(1366)
477 PF01436 NHL: NHL repeat; Int 65.8 18 0.00039 19.0 4.2 25 227-254 4-28 (28)
478 TIGR03606 non_repeat_PQQ dehyd 65.8 1.2E+02 0.0027 28.6 13.8 56 180-236 30-90 (454)
479 smart00564 PQQ beta-propeller 65.6 18 0.00039 19.4 4.0 25 193-218 8-32 (33)
480 smart00284 OLF Olfactomedin-li 65.5 89 0.0019 26.9 15.0 142 112-257 93-252 (255)
481 PF02191 OLF: Olfactomedin-lik 65.1 90 0.002 26.8 16.3 141 112-257 88-247 (250)
482 KOG4460 Nuclear pore complex, 63.8 1.4E+02 0.0031 28.6 15.3 75 140-218 108-206 (741)
483 PF08801 Nucleoporin_N: Nup133 63.8 54 0.0012 30.5 9.1 23 299-321 198-220 (422)
484 COG5276 Uncharacterized conser 63.7 1.1E+02 0.0023 27.1 23.3 183 56-260 94-288 (370)
485 PF15390 DUF4613: Domain of un 63.4 1.5E+02 0.0033 28.8 12.8 114 96-212 58-188 (671)
486 TIGR02604 Piru_Ver_Nterm putat 62.9 1.2E+02 0.0026 27.6 17.3 130 76-206 48-210 (367)
487 COG1770 PtrB Protease II [Amin 62.0 1.7E+02 0.0037 28.9 23.4 201 9-214 130-352 (682)
488 TIGR03606 non_repeat_PQQ dehyd 61.8 1.5E+02 0.0032 28.1 13.6 52 138-191 32-90 (454)
489 PF14727 PHTB1_N: PTHB1 N-term 61.4 1.4E+02 0.0031 27.9 33.0 269 18-325 36-365 (418)
490 PF01731 Arylesterase: Arylest 61.2 54 0.0012 22.9 7.2 49 159-210 36-84 (86)
491 KOG3630 Nuclear pore complex, 61.0 55 0.0012 34.2 8.8 95 157-258 122-229 (1405)
492 COG5308 NUP170 Nuclear pore co 59.7 2.2E+02 0.0047 29.4 12.7 132 73-210 100-275 (1263)
493 PRK13684 Ycf48-like protein; P 59.2 1.4E+02 0.0029 26.9 29.5 106 137-252 174-283 (334)
494 PF11725 AvrE: Pathogenicity f 56.9 68 0.0015 35.1 8.9 159 140-334 367-530 (1774)
495 PHA02790 Kelch-like protein; P 56.1 1.9E+02 0.0041 27.6 20.1 185 59-259 272-472 (480)
496 KOG0783 Uncharacterized conser 56.0 2.4E+02 0.0053 28.9 11.8 29 95-123 229-258 (1267)
497 PF13570 PQQ_3: PQQ-like domai 54.8 39 0.00084 19.3 5.1 23 100-122 17-40 (40)
498 PF01011 PQQ: PQQ enzyme repea 54.1 39 0.00084 19.1 4.2 27 194-221 3-29 (38)
499 COG3292 Predicted periplasmic 51.6 2.4E+02 0.0052 27.5 18.7 36 5-41 162-197 (671)
500 TIGR03032 conserved hypothetic 49.4 1.9E+02 0.0042 25.8 13.5 38 74-111 222-259 (335)
No 1
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=100.00 E-value=1.7e-50 Score=334.58 Aligned_cols=316 Identities=31% Similarity=0.508 Sum_probs=280.5
Q ss_pred CCCeEEEEEcCCCCEEEEEcCCcEEEEeCCCCcEEEE--EeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCC
Q 019349 7 SYPVFFVSFNQDNSGFALSTKDGFKIFDSSTGRLCYE--RAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTT 84 (342)
Q Consensus 7 ~~~V~~l~fs~d~~~la~g~~~g~~v~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~ 84 (342)
+....+++|++|..++++|.+.|+|||++++.+...+ ...+++.+++|++.+|+++++|||.+|.+..++|.|||...
T Consensus 5 ~~~~lsvs~NQD~ScFava~~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k 84 (346)
T KOG2111|consen 5 EPKTLSVSFNQDHSCFAVATDTGFRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLK 84 (346)
T ss_pred cCceeEEEEccCCceEEEEecCceEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEeccc
Confidence 4566779999999999999999999999999765433 33456889999999999999999999999999999999999
Q ss_pred CcEEEEEecCCceEEEEEcCCeEEEEECCeEEEEECC-CCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEE
Q 019349 85 GTALRELNFLTSILAVRLNKKRLVIVLREKTYIYDAN-TLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLV 163 (342)
Q Consensus 85 ~~~~~~~~~~~~v~~i~~~~~~~~~~~d~~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~i 163 (342)
.+++.++.+.++|+++.+.+++++++..++|++|.+. +.+.++.+++..+|.++|++++..+..+||++|. .-|.|+|
T Consensus 85 ~~~i~el~f~~~I~~V~l~r~riVvvl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~-k~GqvQi 163 (346)
T KOG2111|consen 85 ERCIIELSFNSEIKAVKLRRDRIVVVLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGF-KTGQVQI 163 (346)
T ss_pred CcEEEEEEeccceeeEEEcCCeEEEEecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCC-ccceEEE
Confidence 9999999999999999999999999999999999998 7899999999999999999999999999999998 6799999
Q ss_pred EEccCCce--eEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccE
Q 019349 164 YNVMELHS--HCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDI 241 (342)
Q Consensus 164 wd~~~~~~--~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~ 241 (342)
-|+...+. ...+++|.+.|.||+++-+|.+|||||..||+|||||..+|+++.++++|..++.|++|+||||.. +
T Consensus 164 ~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s---~ 240 (346)
T KOG2111|consen 164 VDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSS---W 240 (346)
T ss_pred EEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCcc---E
Confidence 99987665 477899999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred EEEEeCCCcEEEEecCCCCCCCCCCCcccccccccccccccccccccccee---eeccCCCccccEEEEEEeCCcEEEEE
Q 019349 242 LVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVL---RNAFPAGVKRASVSVITYNGYFVEYI 318 (342)
Q Consensus 242 l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~dg~v~~~~ 318 (342)
||++|+.||+|||.++.....+....+......++|.++...|+.....+. ...++|+.+.+.++++|.||.++.+.
T Consensus 241 LavsSdKgTlHiF~l~~~~~~~~~~SSl~~~~~~lpky~~S~wS~~~f~l~~~~~~~~~fg~~~nsvi~i~~Dgsy~k~~ 320 (346)
T KOG2111|consen 241 LAVSSDKGTLHIFSLRDTENTEDESSSLSFKRLVLPKYFSSEWSFAKFQLPQGTQCIIAFGSETNTVIAICADGSYYKFK 320 (346)
T ss_pred EEEEcCCCeEEEEEeecCCCCccccccccccccccchhcccceeEEEEEccCCCcEEEEecCCCCeEEEEEeCCcEEEEE
Confidence 999999999999999876544432222222334788888888988765543 34567787779999999999999999
Q ss_pred EecCCCCe
Q 019349 319 FSINNCCE 326 (342)
Q Consensus 319 ~~~~~~~~ 326 (342)
++++++++
T Consensus 321 f~~~~~g~ 328 (346)
T KOG2111|consen 321 FDPKNGGE 328 (346)
T ss_pred eccccccc
Confidence 99998776
No 2
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=100.00 E-value=8.8e-49 Score=330.21 Aligned_cols=325 Identities=41% Similarity=0.644 Sum_probs=284.7
Q ss_pred CCCCCeEEEEEcCCCCEEEEEcCCcEEEEeCCCCcEEEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCC
Q 019349 5 SSSYPVFFVSFNQDNSGFALSTKDGFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTT 84 (342)
Q Consensus 5 ~~~~~V~~l~fs~d~~~la~g~~~g~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~ 84 (342)
+.+..++.+.|++|...|.+|+.+|+++|++++....+....+++.+++|++++..+++++.+ ..+.+++.+.++
T Consensus 3 ~~~~ti~~~~~Nqd~~~lsvGs~~Gyk~~~~~~~~k~~~~~~~~~~IvEmLFSSSLvaiV~~~-----qpr~Lkv~~~Kk 77 (391)
T KOG2110|consen 3 GKKPTINFIGFNQDSTLLSVGSKDGYKIFSCSPFEKCFSKDTEGVSIVEMLFSSSLVAIVSIK-----QPRKLKVVHFKK 77 (391)
T ss_pred CCCcceeeeeeccceeEEEccCCCceeEEecCchHHhhcccCCCeEEEEeecccceeEEEecC-----CCceEEEEEccc
Confidence 456788999999999999999999999999999877777777899999999999999999984 358999999999
Q ss_pred CcEEEEEecCCceEEEEEcCCeEEEEECCeEEEEECCCCceeeEEeCC-CCCceEEEEeeCCCccEEEEeCCCCccEEEE
Q 019349 85 GTALRELNFLTSILAVRLNKKRLVIVLREKTYIYDANTLAILDTIDTV-PNLKGLCAFSPSLNACFLAVPASTTKGSVLV 163 (342)
Q Consensus 85 ~~~~~~~~~~~~v~~i~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~i 163 (342)
+..+.++.++.+|.++.+++++++++..+.|+|||++++++++++.+- +++.++++++++.++.++|++++...|.|.+
T Consensus 78 ~~~ICe~~fpt~IL~VrmNr~RLvV~Lee~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l 157 (391)
T KOG2110|consen 78 KTTICEIFFPTSILAVRMNRKRLVVCLEESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVL 157 (391)
T ss_pred CceEEEEecCCceEEEEEccceEEEEEcccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEE
Confidence 999999999999999999999999999999999999999999999765 7889999999999999999999888999999
Q ss_pred EEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEE
Q 019349 164 YNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILV 243 (342)
Q Consensus 164 wd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~ 243 (342)
||+.+.+++..+.+|++++-|++|+++|.+|||||+.|++||||++.+|+++++|++|.....|++++|+||++ +|+
T Consensus 158 ~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~---~L~ 234 (391)
T KOG2110|consen 158 FDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQ---FLA 234 (391)
T ss_pred EEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCC---eEE
Confidence 99999999999999999999999999999999999999999999999999999999999888899999999999 999
Q ss_pred EEeCCCcEEEEecCCCCCCCCC--CCcc-------ccccccccccccccccccccceee--------eccCCC--ccccE
Q 019349 244 ATSSSGSLHVFSPGFAINQRRG--GRTS-------SILGSILPESVNEVLDPADHHVLR--------NAFPAG--VKRAS 304 (342)
Q Consensus 244 ~~s~dg~i~vwd~~~~~~~~~~--~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~--~~~~~ 304 (342)
+.|+.+|||||.++.....+.. .... ....+++|.++..+|+.....+-+ ..+.+. .+.++
T Consensus 235 ~sS~TeTVHiFKL~~~~~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~~R~FAt~~l~~s~~~~~~~l~~~~~~~~ 314 (391)
T KOG2110|consen 235 ASSNTETVHIFKLEKVSNNPPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQSRKFATAKLPESGRKNICSLSSIQKIPR 314 (391)
T ss_pred EecCCCeEEEEEecccccCCCCCCCCCCcccchhhhhhhhhcchhhhhhhhhccceeEEEccCCCccceEEeeccCCCCE
Confidence 9999999999999876532211 1111 122347788888888876533211 111112 34689
Q ss_pred EEEEEeCCcEEEEEEecCCCCeeeeEEEeeeeccc
Q 019349 305 VSVITYNGYFVEYIFSINNCCESTWTLDREFNLLT 339 (342)
Q Consensus 305 l~~~~~dg~v~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (342)
+.+++.||.++.|.++++++++ |.+.++|.+..
T Consensus 315 v~vas~dG~~y~y~l~~~~gGe--c~lik~h~~~~ 347 (391)
T KOG2110|consen 315 VLVASYDGHLYSYRLPPKEGGE--CALIKRHFLDG 347 (391)
T ss_pred EEEEEcCCeEEEEEcCCCCCce--eEEEEeeccCC
Confidence 9999999999999999998876 99999998754
No 3
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.8e-37 Score=262.62 Aligned_cols=278 Identities=17% Similarity=0.207 Sum_probs=220.5
Q ss_pred CCCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcEE---EEEeeCCEEEEEEcC-----CCCeEEEEcCCCCCCCCCC
Q 019349 5 SSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLC---YERAVGAFSIVEMLY-----SSSLLAIVGAGEQPSLSPR 75 (342)
Q Consensus 5 ~~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~~---~~~~~~~~~~~~~~~-----~~~~~~~~~~g~~~~~~d~ 75 (342)
.|..-|.|++|+|||+.||+|+.+| +++||..+++.+ +..|...|..++|.+ .+..++..+ .|+
T Consensus 155 gH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~s-------kDg 227 (480)
T KOG0271|consen 155 GHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSS-------KDG 227 (480)
T ss_pred CCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceeccc-------CCC
Confidence 5677899999999999999999888 699999999765 334556666666543 234454443 599
Q ss_pred eEEEEECCCCcEEEEEe-cCCceEEEEEcCCeEEEEE--CCeEEEEECCCCceeeEEeCCCCCceEEEEe---------e
Q 019349 76 RLCLFNTTTGTALRELN-FLTSILAVRLNKKRLVIVL--REKTYIYDANTLAILDTIDTVPNLKGLCAFS---------P 143 (342)
Q Consensus 76 ~i~iwd~~~~~~~~~~~-~~~~v~~i~~~~~~~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~---------~ 143 (342)
+++|||+..++++..+. +..+|+++.+..+.++..+ |++|++|+..++++.+.+..|.+-....+++ +
T Consensus 228 ~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf 307 (480)
T KOG0271|consen 228 SVRIWDTKLGTCVRTLSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAF 307 (480)
T ss_pred CEEEEEccCceEEEEeccCccceEEEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhcccc
Confidence 99999999999998876 4569999999988776655 8899999999999999998887755544444 1
Q ss_pred CCC-------------------------ccEEEEeCCCCccEEEEEEccC-CceeEEEecccCCeeEEEECCCCCEEEEE
Q 019349 144 SLN-------------------------ACFLAVPASTTKGSVLVYNVME-LHSHCEIDAHQAPLAAIVLSSNGMYIATA 197 (342)
Q Consensus 144 ~~~-------------------------~~~l~~~~~~~~g~i~iwd~~~-~~~~~~~~~h~~~v~~i~~s~dg~~lat~ 197 (342)
++. +..|++++ .|+++.+|+-.. .+++..+.+|..-|+.+.||||++++|+|
T Consensus 308 ~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgs--Dd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASa 385 (480)
T KOG0271|consen 308 DHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGS--DDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASA 385 (480)
T ss_pred ccccccCCChHHHHHHHHHHHHHhhccCcceeEEec--CCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEe
Confidence 111 12477666 699999999754 45788889999999999999999999999
Q ss_pred eCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCcccccccccc
Q 019349 198 SEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILP 277 (342)
Q Consensus 198 s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 277 (342)
|-|.. ||+||-++|+.+..|+.+ -+.|+.++|+.|.+ +|+++|.|.|++|||+++.+...- +-++-.
T Consensus 386 SFDkS-VkLW~g~tGk~lasfRGH--v~~VYqvawsaDsR---LlVS~SkDsTLKvw~V~tkKl~~D-------LpGh~D 452 (480)
T KOG0271|consen 386 SFDKS-VKLWDGRTGKFLASFRGH--VAAVYQVAWSADSR---LLVSGSKDSTLKVWDVRTKKLKQD-------LPGHAD 452 (480)
T ss_pred ecccc-eeeeeCCCcchhhhhhhc--cceeEEEEeccCcc---EEEEcCCCceEEEEEeeeeeeccc-------CCCCCc
Confidence 99987 599999999999999754 56799999999999 999999999999999998764221 222233
Q ss_pred ccccccccccccceeeeccCCCccccEEEEEEeCCcEEEEE
Q 019349 278 ESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYI 318 (342)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~ 318 (342)
+.+..-|+|++ .++++++.|.-+++|.
T Consensus 453 EVf~vDwspDG--------------~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 453 EVFAVDWSPDG--------------QRVASGGKDKVLRLWR 479 (480)
T ss_pred eEEEEEecCCC--------------ceeecCCCceEEEeec
Confidence 44455677765 7899999999999884
No 4
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.9e-37 Score=265.41 Aligned_cols=277 Identities=14% Similarity=0.159 Sum_probs=226.1
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEcCCcE-EEEeCCCCcEE--EEEeeCCEEEEEEcCCCC--eEEEEcCCCCCCCCCCeEE
Q 019349 4 QSSSYPVFFVSFNQDNSGFALSTKDGF-KIFDSSTGRLC--YERAVGAFSIVEMLYSSS--LLAIVGAGEQPSLSPRRLC 78 (342)
Q Consensus 4 ~~~~~~V~~l~fs~d~~~la~g~~~g~-~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~d~~i~ 78 (342)
-..+.||..+.|+.|++.||+|+-+|. +||+..+...+ +..|...+..+.+.+..+ .++.++ .|++++
T Consensus 172 ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s-------~Dgtvk 244 (459)
T KOG0272|consen 172 VGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATAS-------ADGTVK 244 (459)
T ss_pred ccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeec-------cCCcee
Confidence 356789999999999999999999996 99998887554 444556677777777632 444444 599999
Q ss_pred EEECCCCcEEEEEecC-CceEEEEEcCCeEEEEE---CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeC
Q 019349 79 LFNTTTGTALRELNFL-TSILAVRLNKKRLVIVL---REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPA 154 (342)
Q Consensus 79 iwd~~~~~~~~~~~~~-~~v~~i~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 154 (342)
+|++.+..++..++.+ ..|..++|+|++.++++ |.+-++||+++++.+...+.| ..++..+++.+||.+++++|
T Consensus 245 lw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGH--s~~v~~iaf~~DGSL~~tGG 322 (459)
T KOG0272|consen 245 LWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGH--SKGVFSIAFQPDGSLAATGG 322 (459)
T ss_pred eeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhccc--ccccceeEecCCCceeeccC
Confidence 9999998899888754 48999999999877766 889999999998766555544 45788888899999999888
Q ss_pred CCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEec
Q 019349 155 STTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQ 234 (342)
Q Consensus 155 ~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~ 234 (342)
.|..-+|||++++.++..+.+|..+|.+|+|+|+|..|||||.|++ +||||++....++.+..+ ...|..+.|+|
T Consensus 323 --lD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt-~kVWDLR~r~~ly~ipAH--~nlVS~Vk~~p 397 (459)
T KOG0272|consen 323 --LDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNT-CKVWDLRMRSELYTIPAH--SNLVSQVKYSP 397 (459)
T ss_pred --ccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCc-EEEeeecccccceecccc--cchhhheEecc
Confidence 6899999999999999999999999999999999999999999998 599999999888888654 45699999999
Q ss_pred -CCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEEEEEEeCCc
Q 019349 235 -SMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGY 313 (342)
Q Consensus 235 -d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~ 313 (342)
.|. +|+++|.|++++||.-++..+.++ +.++-.+.+..-. .+++..|++++.|.+
T Consensus 398 ~~g~---fL~TasyD~t~kiWs~~~~~~~ks-------LaGHe~kV~s~Di--------------s~d~~~i~t~s~DRT 453 (459)
T KOG0272|consen 398 QEGY---FLVTASYDNTVKIWSTRTWSPLKS-------LAGHEGKVISLDI--------------SPDSQAIATSSFDRT 453 (459)
T ss_pred cCCe---EEEEcccCcceeeecCCCcccchh-------hcCCccceEEEEe--------------ccCCceEEEeccCce
Confidence 556 999999999999999877766553 3333333222222 334478999999999
Q ss_pred EEEEE
Q 019349 314 FVEYI 318 (342)
Q Consensus 314 v~~~~ 318 (342)
++.|.
T Consensus 454 ~KLW~ 458 (459)
T KOG0272|consen 454 IKLWR 458 (459)
T ss_pred eeecc
Confidence 99994
No 5
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.4e-36 Score=257.23 Aligned_cols=281 Identities=12% Similarity=0.107 Sum_probs=221.9
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcEEEE--EeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEE
Q 019349 4 QSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYE--RAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLF 80 (342)
Q Consensus 4 ~~~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iw 80 (342)
+.|.++|.|++|+|+|..||+|+.|. +|+||+++-...+. .|.+-+.++++.+++..++..+ .|++|++|
T Consensus 112 ~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~-------~dg~I~lw 184 (480)
T KOG0271|consen 112 AGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGS-------KDGSIRLW 184 (480)
T ss_pred CCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccc-------cCCeEEEe
Confidence 57899999999999999999998886 69999988766554 4556778888888888877654 59999999
Q ss_pred ECCCCcEEEE-Ee-cCCceEEEEEcCC------e-EEEEE-CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEE
Q 019349 81 NTTTGTALRE-LN-FLTSILAVRLNKK------R-LVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFL 150 (342)
Q Consensus 81 d~~~~~~~~~-~~-~~~~v~~i~~~~~------~-~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 150 (342)
|.++|+++.. +. +...|.+++|.|- + ++.++ ||.++|||+..++++..+..|.+ .+.|+.+.+++ ++
T Consensus 185 dpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~--~VTCvrwGG~g-li 261 (480)
T KOG0271|consen 185 DPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTA--SVTCVRWGGEG-LI 261 (480)
T ss_pred cCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCcc--ceEEEEEcCCc-eE
Confidence 9999998864 33 4558999999663 2 22233 99999999999999999887766 57788887654 45
Q ss_pred EEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEEC-----------CCC-------------------------CEE
Q 019349 151 AVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLS-----------SNG-------------------------MYI 194 (342)
Q Consensus 151 ~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s-----------~dg-------------------------~~l 194 (342)
++ |+ .|++|++|+...|.+.+.+++|...|+.|++| |.| ..|
T Consensus 262 yS-gS-~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erl 339 (480)
T KOG0271|consen 262 YS-GS-QDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERL 339 (480)
T ss_pred Ee-cC-CCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCccee
Confidence 54 44 79999999999999999999999999999987 223 359
Q ss_pred EEEeCCCcEEEEEEcCCCe-eEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCcccccc
Q 019349 195 ATASEQGTIIRVFLVSEAT-KSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILG 273 (342)
Q Consensus 195 at~s~dg~~irlwd~~~~~-~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~ 273 (342)
++||+|.+++ +|+-...+ .+.++. .|...|+.+.||||++ ++|++|-|.+|++||-++++-..+ +.
T Consensus 340 VSgsDd~tlf-lW~p~~~kkpi~rmt--gHq~lVn~V~fSPd~r---~IASaSFDkSVkLW~g~tGk~las-------fR 406 (480)
T KOG0271|consen 340 VSGSDDFTLF-LWNPFKSKKPITRMT--GHQALVNHVSFSPDGR---YIASASFDKSVKLWDGRTGKFLAS-------FR 406 (480)
T ss_pred EEecCCceEE-Eecccccccchhhhh--chhhheeeEEECCCcc---EEEEeecccceeeeeCCCcchhhh-------hh
Confidence 9999999976 99976543 555543 3456799999999999 999999999999999887764332 22
Q ss_pred ccccccccccccccccceeeeccCCCccccEEEEEEeCCcEEEEEEecCC
Q 019349 274 SILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSINN 323 (342)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~~~~~~ 323 (342)
++........|+.+. ..|+++|.|-++++|++..++
T Consensus 407 GHv~~VYqvawsaDs--------------RLlVS~SkDsTLKvw~V~tkK 442 (480)
T KOG0271|consen 407 GHVAAVYQVAWSADS--------------RLLVSGSKDSTLKVWDVRTKK 442 (480)
T ss_pred hccceeEEEEeccCc--------------cEEEEcCCCceEEEEEeeeee
Confidence 333444455676654 679999999999999987654
No 6
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.2e-32 Score=226.12 Aligned_cols=280 Identities=13% Similarity=0.148 Sum_probs=218.3
Q ss_pred CCCCCCCeEEEEEcCCCCEEEEEcCCcE-EEEeCCCCcEEEEEeeC--CEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEE
Q 019349 3 NQSSSYPVFFVSFNQDNSGFALSTKDGF-KIFDSSTGRLCYERAVG--AFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCL 79 (342)
Q Consensus 3 ~~~~~~~V~~l~fs~d~~~la~g~~~g~-~v~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~i 79 (342)
+..|...|+++.|++|.++|++++.||. .|||.-+.......... -+-..++.+++++++..| -|+..-|
T Consensus 51 LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGG-------LdN~Csi 123 (343)
T KOG0286|consen 51 LKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGG-------LDNKCSI 123 (343)
T ss_pred ecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecC-------cCceeEE
Confidence 4568889999999999999999999995 99998776554443333 344455666667766544 4899999
Q ss_pred EECCCC--c----EEEEEe-cCCceEEEEEcCCeEEEEE--CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCC-CccE
Q 019349 80 FNTTTG--T----ALRELN-FLTSILAVRLNKKRLVIVL--REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSL-NACF 149 (342)
Q Consensus 80 wd~~~~--~----~~~~~~-~~~~v~~i~~~~~~~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 149 (342)
|++.+. + ...++. +.+.+.++.|-++..++.+ |.+..+||+++++.+..+..|.. .+.+++..| +.+.
T Consensus 124 y~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~g--DV~slsl~p~~~nt 201 (343)
T KOG0286|consen 124 YPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHGHTG--DVMSLSLSPSDGNT 201 (343)
T ss_pred EecccccccccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEecCCcc--cEEEEecCCCCCCe
Confidence 999854 2 122232 4557888888777666654 77999999999999999976655 466666666 7778
Q ss_pred EEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEE
Q 019349 150 LAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFS 229 (342)
Q Consensus 150 l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~ 229 (342)
+++++ -|+..++||++.+.++++|.+|++.|++|+|.|+|.-++|||+|++ .|+||++..+.+..+........|++
T Consensus 202 FvSg~--cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~t-cRlyDlRaD~~~a~ys~~~~~~gitS 278 (343)
T KOG0286|consen 202 FVSGG--CDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDAT-CRLYDLRADQELAVYSHDSIICGITS 278 (343)
T ss_pred EEecc--cccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCce-eEEEeecCCcEEeeeccCcccCCcee
Confidence 88888 4899999999999999999999999999999999999999999998 59999999999888865444566999
Q ss_pred EEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEEEEEE
Q 019349 230 LSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVIT 309 (342)
Q Consensus 230 l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 309 (342)
++||..|+ +|.+|..|.++.+||.-..+... .+.+ |.-.+.-+...|++-.+.++|
T Consensus 279 v~FS~SGR---lLfagy~d~~c~vWDtlk~e~vg-------~L~G--------------HeNRvScl~~s~DG~av~TgS 334 (343)
T KOG0286|consen 279 VAFSKSGR---LLFAGYDDFTCNVWDTLKGERVG-------VLAG--------------HENRVSCLGVSPDGMAVATGS 334 (343)
T ss_pred EEEccccc---EEEeeecCCceeEeeccccceEE-------Eeec--------------cCCeeEEEEECCCCcEEEecc
Confidence 99999999 99999999999999965544311 1222 222223334456667899999
Q ss_pred eCCcEEEEE
Q 019349 310 YNGYFVEYI 318 (342)
Q Consensus 310 ~dg~v~~~~ 318 (342)
-|-++++|.
T Consensus 335 WDs~lriW~ 343 (343)
T KOG0286|consen 335 WDSTLRIWA 343 (343)
T ss_pred hhHheeecC
Confidence 999999994
No 7
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=2.8e-32 Score=222.62 Aligned_cols=286 Identities=13% Similarity=0.092 Sum_probs=211.0
Q ss_pred CCCCCCCeEEEEEcCCCC-EEEEEcCCc-EEEEeCCCC-----cE--EEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCC
Q 019349 3 NQSSSYPVFFVSFNQDNS-GFALSTKDG-FKIFDSSTG-----RL--CYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLS 73 (342)
Q Consensus 3 ~~~~~~~V~~l~fs~d~~-~la~g~~~g-~~v~d~~~~-----~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 73 (342)
...++..|..++..+.+. .|+.++.|. +.+|++... .. .+..|.+-+.-+.+.+++++.+.++ .
T Consensus 11 l~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~s-------w 83 (315)
T KOG0279|consen 11 LEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSAS-------W 83 (315)
T ss_pred ecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEecc-------c
Confidence 357889999999999864 466666665 689987544 22 2444555666677777777776665 4
Q ss_pred CCeEEEEECCCCcEEEEEec-CCceEEEEEcCCeEEEEE---CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCC--c
Q 019349 74 PRRLCLFNTTTGTALRELNF-LTSILAVRLNKKRLVIVL---REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLN--A 147 (342)
Q Consensus 74 d~~i~iwd~~~~~~~~~~~~-~~~v~~i~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 147 (342)
|+++++||+.+++....+.. ...|.+++++++...+++ |++|++||+-.. +..++....+..=+.++.++|+ +
T Consensus 84 D~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~-ck~t~~~~~~~~WVscvrfsP~~~~ 162 (315)
T KOG0279|consen 84 DGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGV-CKYTIHEDSHREWVSCVRFSPNESN 162 (315)
T ss_pred cceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeeccc-EEEEEecCCCcCcEEEEEEcCCCCC
Confidence 99999999999988877754 458999999998665555 899999998654 3344433332333445555554 7
Q ss_pred cEEEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeE
Q 019349 148 CFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTI 227 (342)
Q Consensus 148 ~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v 227 (342)
..|+.++ .|++|++||+++.+...++.+|.+-++.+++||||.++++|+.||.+ .+||++.++.++.+. +...|
T Consensus 163 p~Ivs~s--~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~-~LwdL~~~k~lysl~---a~~~v 236 (315)
T KOG0279|consen 163 PIIVSAS--WDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEA-MLWDLNEGKNLYSLE---AFDIV 236 (315)
T ss_pred cEEEEcc--CCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceE-EEEEccCCceeEecc---CCCeE
Confidence 7888887 79999999999999999999999999999999999999999999986 699999999998884 34579
Q ss_pred EEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCccc-c-ccccccccccccccccccceeeeccCCCccccEE
Q 019349 228 FSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSS-I-LGSILPESVNEVLDPADHHVLRNAFPAGVKRASV 305 (342)
Q Consensus 228 ~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 305 (342)
.+++|+|+.. +|+.+. +..|+|||++............. . ...-.|.-....|+.+ +..|
T Consensus 237 ~sl~fspnry---wL~~at-~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~d--------------G~tL 298 (315)
T KOG0279|consen 237 NSLCFSPNRY---WLCAAT-ATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSAD--------------GQTL 298 (315)
T ss_pred eeEEecCCce---eEeecc-CCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCC--------------CcEE
Confidence 9999999986 666555 44699999988765432111000 0 0001122223445544 4899
Q ss_pred EEEEeCCcEEEEEEe
Q 019349 306 SVITYNGYFVEYIFS 320 (342)
Q Consensus 306 ~~~~~dg~v~~~~~~ 320 (342)
+++-.|+.|++|++.
T Consensus 299 f~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 299 FAGYTDNVIRVWQVA 313 (315)
T ss_pred EeeecCCcEEEEEee
Confidence 999999999999874
No 8
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.3e-32 Score=238.78 Aligned_cols=276 Identities=16% Similarity=0.207 Sum_probs=229.8
Q ss_pred CCCCCeEEEEEcCCCCEEEEEcCCcE-EEEeCCCCcE-EEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEEC
Q 019349 5 SSSYPVFFVSFNQDNSGFALSTKDGF-KIFDSSTGRL-CYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNT 82 (342)
Q Consensus 5 ~~~~~V~~l~fs~d~~~la~g~~~g~-~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~ 82 (342)
.....|++++||.+|+.||+|+.+|. |+|+...... .+..|.+++..+.|...+++++..+. |+++.+||.
T Consensus 233 ~~nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~v-------D~ttilwd~ 305 (524)
T KOG0273|consen 233 PSNKDVTSLDWNNDGTLLATGSEDGEARIWNKDGNLISTLGQHKGPIFSLKWNKKGTYILSGGV-------DGTTILWDA 305 (524)
T ss_pred CccCCcceEEecCCCCeEEEeecCcEEEEEecCchhhhhhhccCCceEEEEEcCCCCEEEeccC-------CccEEEEec
Confidence 45678999999999999999999996 9999765432 35557788888888888888876654 999999999
Q ss_pred CCCcEEEEEecCCce-EEEEEcCCe-EEEEE-CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCcc
Q 019349 83 TTGTALRELNFLTSI-LAVRLNKKR-LVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKG 159 (342)
Q Consensus 83 ~~~~~~~~~~~~~~v-~~i~~~~~~-~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g 159 (342)
.+|+....+.+++.. .++.|-.+. ++..+ |+.|+++.+....++.++..|.+ .+.++-++|.+.+|++++ .|+
T Consensus 306 ~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g--~V~alk~n~tg~LLaS~S--dD~ 381 (524)
T KOG0273|consen 306 HTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHG--EVNALKWNPTGSLLASCS--DDG 381 (524)
T ss_pred cCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccC--ceEEEEECCCCceEEEec--CCC
Confidence 999999999888755 888885554 44444 88999999998888989887655 578889999999999998 699
Q ss_pred EEEEEEccCCceeEEEecccCCeeEEEECCCC---------CEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEE
Q 019349 160 SVLVYNVMELHSHCEIDAHQAPLAAIVLSSNG---------MYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSL 230 (342)
Q Consensus 160 ~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg---------~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l 230 (342)
+++||.+........+.+|...|..+.|+|+| ..|++++.|++ +++||+..|.+++.|.++ ..+|+++
T Consensus 382 TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dst-V~lwdv~~gv~i~~f~kH--~~pVysv 458 (524)
T KOG0273|consen 382 TLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDST-VKLWDVESGVPIHTLMKH--QEPVYSV 458 (524)
T ss_pred eeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCe-EEEEEccCCceeEeeccC--CCceEEE
Confidence 99999999988999999999999999999875 57999999997 599999999999999755 5679999
Q ss_pred EEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEEEEEEe
Q 019349 231 SFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITY 310 (342)
Q Consensus 231 ~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 310 (342)
+|||+++ +||+|+.||.|++|+++..+..+...... ..+...|+.++ ++|.++-+
T Consensus 459 afS~~g~---ylAsGs~dg~V~iws~~~~~l~~s~~~~~--------~Ifel~Wn~~G--------------~kl~~~~s 513 (524)
T KOG0273|consen 459 AFSPNGR---YLASGSLDGCVHIWSTKTGKLVKSYQGTG--------GIFELCWNAAG--------------DKLGACAS 513 (524)
T ss_pred EecCCCc---EEEecCCCCeeEeccccchheeEeecCCC--------eEEEEEEcCCC--------------CEEEEEec
Confidence 9999999 99999999999999999887644311111 12445787766 78999999
Q ss_pred CCcEEEEEE
Q 019349 311 NGYFVEYIF 319 (342)
Q Consensus 311 dg~v~~~~~ 319 (342)
||.+.+.++
T Consensus 514 d~~vcvldl 522 (524)
T KOG0273|consen 514 DGSVCVLDL 522 (524)
T ss_pred CCCceEEEe
Confidence 999988776
No 9
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=2.7e-32 Score=219.41 Aligned_cols=243 Identities=13% Similarity=0.197 Sum_probs=200.5
Q ss_pred CCCCCeEEEEEcCCCCEEEEEcCCcEEEEeCCCCc----EEEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEE
Q 019349 5 SSSYPVFFVSFNQDNSGFALSTKDGFKIFDSSTGR----LCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLF 80 (342)
Q Consensus 5 ~~~~~V~~l~fs~d~~~la~g~~~g~~v~d~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iw 80 (342)
-+++.|+.+..+||++.||+|+..-+|+||++++. ..++.+.+.+..+.+..++..+...+ .|++++||
T Consensus 38 h~dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgs-------eDgt~kIW 110 (311)
T KOG0315|consen 38 HPDSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGS-------EDGTVKIW 110 (311)
T ss_pred cCccceeeEEEcCCcchhhhccCCeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecC-------CCceEEEE
Confidence 45778999999999999999999999999998874 34666667888888888877776554 49999999
Q ss_pred ECCCCcEEEEEecCCceEEEEEcCCe--EEEEE-CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCC
Q 019349 81 NTTTGTALRELNFLTSILAVRLNKKR--LVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTT 157 (342)
Q Consensus 81 d~~~~~~~~~~~~~~~v~~i~~~~~~--~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 157 (342)
|++...+.+.+++.++|.++.++|+. ++++. ++.|++||+....+.+.+. ++....+..++..+++.+++.+. .
T Consensus 111 dlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~li-Pe~~~~i~sl~v~~dgsml~a~n--n 187 (311)
T KOG0315|consen 111 DLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELI-PEDDTSIQSLTVMPDGSMLAAAN--N 187 (311)
T ss_pred eccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccC-CCCCcceeeEEEcCCCcEEEEec--C
Confidence 99998888899999999999999875 33333 6799999998876665553 33345677888889999999887 5
Q ss_pred ccEEEEEEccCC------ceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCC-eeEEEeccCcCceeEEEE
Q 019349 158 KGSVLVYNVMEL------HSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEA-TKSYSFRRGTYPSTIFSL 230 (342)
Q Consensus 158 ~g~i~iwd~~~~------~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~-~~~~~~~~~~~~~~v~~l 230 (342)
.|...+|++.+. +++..+++|.+-+..+.+|||+++|||+|.|.+ ++||++.+. +....+. .+..-+...
T Consensus 188 kG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdkt-v~iwn~~~~~kle~~l~--gh~rWvWdc 264 (311)
T KOG0315|consen 188 KGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKT-VKIWNTDDFFKLELVLT--GHQRWVWDC 264 (311)
T ss_pred CccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCce-EEEEecCCceeeEEEee--cCCceEEee
Confidence 899999998654 356778899999999999999999999999988 589999877 2222332 334569999
Q ss_pred EEecCCCcccEEEEEeCCCcEEEEecCCCCCCC
Q 019349 231 SFGQSMQFQDILVATSSSGSLHVFSPGFAINQR 263 (342)
Q Consensus 231 ~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~ 263 (342)
+||.|++ ||++|+.|+++++|+++.+++.+
T Consensus 265 ~FS~dg~---YlvTassd~~~rlW~~~~~k~v~ 294 (311)
T KOG0315|consen 265 AFSADGE---YLVTASSDHTARLWDLSAGKEVR 294 (311)
T ss_pred eeccCcc---EEEecCCCCceeecccccCceee
Confidence 9999999 99999999999999999988755
No 10
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=7.4e-32 Score=245.74 Aligned_cols=298 Identities=12% Similarity=0.163 Sum_probs=221.7
Q ss_pred CCCCeEEEEEcCCCCEEEEEcCC--cEEEEeCCCCcEEEEEeeC--CEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEE
Q 019349 6 SSYPVFFVSFNQDNSGFALSTKD--GFKIFDSSTGRLCYERAVG--AFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFN 81 (342)
Q Consensus 6 ~~~~V~~l~fs~d~~~la~g~~~--g~~v~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd 81 (342)
...+|..++||..|..||.|+.+ -+-||++++-..++..+.+ .+..++..++++.+++.+ .|++|+|||
T Consensus 306 s~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~-------eDgKVKvWn 378 (893)
T KOG0291|consen 306 SDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGA-------EDGKVKVWN 378 (893)
T ss_pred ccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEecc-------CCCcEEEEe
Confidence 45789999999999999999887 3699999887777666544 444455555555655443 599999999
Q ss_pred CCCCcEEEEEec-CCceEEEEEcCCeEEEE--E-CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCC
Q 019349 82 TTTGTALRELNF-LTSILAVRLNKKRLVIV--L-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTT 157 (342)
Q Consensus 82 ~~~~~~~~~~~~-~~~v~~i~~~~~~~~~~--~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 157 (342)
..+|-|+.++.. .+.|+.+.|+..+.++. + ||+|+.||+...+..+++.. +.+....+++.+|.+..++.++. .
T Consensus 379 ~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~-P~p~QfscvavD~sGelV~AG~~-d 456 (893)
T KOG0291|consen 379 TQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTS-PEPIQFSCVAVDPSGELVCAGAQ-D 456 (893)
T ss_pred ccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecC-CCceeeeEEEEcCCCCEEEeecc-c
Confidence 999999998864 56899999977654443 3 99999999999999999865 56677778888887777766664 4
Q ss_pred ccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCe-eEEEeccCcCceeEEEEEEecCC
Q 019349 158 KGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEAT-KSYSFRRGTYPSTIFSLSFGQSM 236 (342)
Q Consensus 158 ~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~-~~~~~~~~~~~~~v~~l~fs~d~ 236 (342)
.=.|.+|++++|+.+-.+.+|++||.+++|+|+|+.||++|.|.+ ||+||+-... ...+++ ....+..++|+|||
T Consensus 457 ~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkT-VRiW~if~s~~~vEtl~---i~sdvl~vsfrPdG 532 (893)
T KOG0291|consen 457 SFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKT-VRIWDIFSSSGTVETLE---IRSDVLAVSFRPDG 532 (893)
T ss_pred eEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccce-EEEEEeeccCceeeeEe---eccceeEEEEcCCC
Confidence 567999999999999999999999999999999999999999988 5999996542 333442 23458999999999
Q ss_pred CcccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccc-cccccccccccccccceeeeccCCCccccEEEEEEeCCcEE
Q 019349 237 QFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGS-ILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFV 315 (342)
Q Consensus 237 ~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~ 315 (342)
+ .||+++.||.|.+||++......+.+...-..++ ...+.+..--+.. ....+.+...++++.|++|+....|.
T Consensus 533 ~---elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~--~K~Ftti~ySaDG~~IlAgG~sn~iC 607 (893)
T KOG0291|consen 533 K---ELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAK--GKTFTTICYSADGKCILAGGESNSIC 607 (893)
T ss_pred C---eEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhccc--CCceEEEEEcCCCCEEEecCCcccEE
Confidence 9 9999999999999999876654221111010111 0011110000000 01123445567789999999999999
Q ss_pred EEEEec
Q 019349 316 EYIFSI 321 (342)
Q Consensus 316 ~~~~~~ 321 (342)
+|++..
T Consensus 608 iY~v~~ 613 (893)
T KOG0291|consen 608 IYDVPE 613 (893)
T ss_pred EEECch
Confidence 998865
No 11
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=9.9e-33 Score=253.06 Aligned_cols=239 Identities=16% Similarity=0.226 Sum_probs=203.6
Q ss_pred CCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcE---------------------------------EEEEeeCCEEE
Q 019349 6 SSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRL---------------------------------CYERAVGAFSI 51 (342)
Q Consensus 6 ~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~---------------------------------~~~~~~~~~~~ 51 (342)
....++|..|++|++.||+|..+. +++|.+.+.++ ....|.+++.-
T Consensus 377 t~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg 456 (707)
T KOG0263|consen 377 TYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYG 456 (707)
T ss_pred cCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceee
Confidence 456799999999999999998887 69998774210 12234567777
Q ss_pred EEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEEEEEecC-CceEEEEEcCCeEEEEE---CCeEEEEECCCCceee
Q 019349 52 VEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFL-TSILAVRLNKKRLVIVL---REKTYIYDANTLAILD 127 (342)
Q Consensus 52 ~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~~~~~-~~v~~i~~~~~~~~~~~---d~~i~i~d~~~~~~~~ 127 (342)
+.+.++.++++.++. |.++|+|.+.+..++-.+..+ .+|.++.|+|.+.+.++ |++.++|.....++++
T Consensus 457 ~sFsPd~rfLlScSE-------D~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlR 529 (707)
T KOG0263|consen 457 CSFSPDRRFLLSCSE-------DSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLR 529 (707)
T ss_pred eeecccccceeeccC-------CcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchh
Confidence 888888888877764 899999999999988877654 49999999998777766 8899999999888888
Q ss_pred EEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEE
Q 019349 128 TIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVF 207 (342)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlw 207 (342)
.+..|-+... |+.++|+..++|+++ .|.+|++||+.+|..++.|.+|.++|.+++|||+|++||+|++||. |++|
T Consensus 530 ifaghlsDV~--cv~FHPNs~Y~aTGS--sD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~-I~iW 604 (707)
T KOG0263|consen 530 IFAGHLSDVD--CVSFHPNSNYVATGS--SDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGL-IKIW 604 (707)
T ss_pred hhcccccccc--eEEECCcccccccCC--CCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCc-EEEE
Confidence 8877766544 556677788999987 6899999999999999999999999999999999999999999997 5899
Q ss_pred EcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCC
Q 019349 208 LVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAIN 261 (342)
Q Consensus 208 d~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~ 261 (342)
|+.+|..+.++..+ .+.|++|.||.||. .||+|+.|++|++||+.....
T Consensus 605 Dl~~~~~v~~l~~H--t~ti~SlsFS~dg~---vLasgg~DnsV~lWD~~~~~~ 653 (707)
T KOG0263|consen 605 DLANGSLVKQLKGH--TGTIYSLSFSRDGN---VLASGGADNSVRLWDLTKVIE 653 (707)
T ss_pred EcCCCcchhhhhcc--cCceeEEEEecCCC---EEEecCCCCeEEEEEchhhcc
Confidence 99999999998755 66799999999999 999999999999999977654
No 12
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=3.3e-33 Score=239.46 Aligned_cols=235 Identities=16% Similarity=0.176 Sum_probs=205.5
Q ss_pred CCCCCCeEEEEEcCC--CCEEEEEcCCc-EEEEeCCCCcEE--EEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEE
Q 019349 4 QSSSYPVFFVSFNQD--NSGFALSTKDG-FKIFDSSTGRLC--YERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLC 78 (342)
Q Consensus 4 ~~~~~~V~~l~fs~d--~~~la~g~~~g-~~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~ 78 (342)
.+|.+.|.++.|+|. +..||+++.|| +++|++++...+ ++.|...+..+.+.+++.++++.+ .|.+-+
T Consensus 214 ~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~Tas-------fD~tWR 286 (459)
T KOG0272|consen 214 RGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTAS-------FDSTWR 286 (459)
T ss_pred eccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecc-------cccchh
Confidence 468889999999997 56799999888 599999886655 344556777888888888887776 499999
Q ss_pred EEECCCCcEEEEEec-CCceEEEEEcCCeEEEEE---CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeC
Q 019349 79 LFNTTTGTALRELNF-LTSILAVRLNKKRLVIVL---REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPA 154 (342)
Q Consensus 79 iwd~~~~~~~~~~~~-~~~v~~i~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 154 (342)
+||+.++..+...+. ...|.+++|++++-++++ |..-+|||+++++++-.+..|. ..+..++++|+|..||+++
T Consensus 287 lWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~--k~I~~V~fsPNGy~lATgs 364 (459)
T KOG0272|consen 287 LWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHI--KEILSVAFSPNGYHLATGS 364 (459)
T ss_pred hcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEecccc--cceeeEeECCCceEEeecC
Confidence 999999987765554 458999999999988877 6789999999999998887754 4688899999999999998
Q ss_pred CCCccEEEEEEccCCceeEEEecccCCeeEEEECC-CCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEe
Q 019349 155 STTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSS-NGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFG 233 (342)
Q Consensus 155 ~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~-dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs 233 (342)
.|++++|||++..+++.++++|.+-|+.|.|+| .|.+|+|+|.|++ +++|...+.++++.+.. |..+|.++.++
T Consensus 365 --~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t-~kiWs~~~~~~~ksLaG--He~kV~s~Dis 439 (459)
T KOG0272|consen 365 --SDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNT-VKIWSTRTWSPLKSLAG--HEGKVISLDIS 439 (459)
T ss_pred --CCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcc-eeeecCCCcccchhhcC--CccceEEEEec
Confidence 689999999999999999999999999999998 8899999999998 59999999999999864 46789999999
Q ss_pred cCCCcccEEEEEeCCCcEEEEe
Q 019349 234 QSMQFQDILVATSSSGSLHVFS 255 (342)
Q Consensus 234 ~d~~~~~~l~~~s~dg~i~vwd 255 (342)
+|+. ++++++.|.++++|.
T Consensus 440 ~d~~---~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 440 PDSQ---AIATSSFDRTIKLWR 458 (459)
T ss_pred cCCc---eEEEeccCceeeecc
Confidence 9999 999999999999995
No 13
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=9.3e-33 Score=235.81 Aligned_cols=278 Identities=12% Similarity=0.149 Sum_probs=220.3
Q ss_pred CCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCC--cEEEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEEC
Q 019349 6 SSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTG--RLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNT 82 (342)
Q Consensus 6 ~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~ 82 (342)
..-+|..+.|.|+|+.|++|++.| +.+|+..+. +.+...|...+..+.+.+++..++... .++.|++|+.
T Consensus 95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD-------~gG~iKyWqp 167 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGD-------KGGMIKYWQP 167 (464)
T ss_pred cccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcC-------CCceEEeccc
Confidence 456899999999999999999888 799998654 444555667777778877776654433 4899999997
Q ss_pred CCCcEEEEEecC-CceEEEEEcCCe--EEEEE-CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCc
Q 019349 83 TTGTALRELNFL-TSILAVRLNKKR--LVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTK 158 (342)
Q Consensus 83 ~~~~~~~~~~~~-~~v~~i~~~~~~--~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 158 (342)
.-........++ ..|++++|+++. ++.++ |++|+|||+...+....+..|. -.+.++.++|....+|++| .|
T Consensus 168 nmnnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHg--wdVksvdWHP~kgLiasgs--kD 243 (464)
T KOG0284|consen 168 NMNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHG--WDVKSVDWHPTKGLIASGS--KD 243 (464)
T ss_pred chhhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCC--CCcceeccCCccceeEEcc--CC
Confidence 654433333344 689999998753 44455 7899999999887777775443 3567888999888999888 57
Q ss_pred cEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCc
Q 019349 159 GSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQF 238 (342)
Q Consensus 159 g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~ 238 (342)
..|++||.+++.++.++.+|+..|..+.|+|++++|+|+|.|.. ++++|+++.+.+..++.+ ...|++++|+|-..
T Consensus 244 nlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~-~kv~DiR~mkEl~~~r~H--kkdv~~~~WhP~~~- 319 (464)
T KOG0284|consen 244 NLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQS-CKVFDIRTMKELFTYRGH--KKDVTSLTWHPLNE- 319 (464)
T ss_pred ceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCce-EEEEehhHhHHHHHhhcc--hhhheeeccccccc-
Confidence 89999999999999999999999999999999999999999986 699999988888888643 55699999999887
Q ss_pred ccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEEEEEEeCCcEEEEE
Q 019349 239 QDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYI 318 (342)
Q Consensus 239 ~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~ 318 (342)
++|.+|+.||.|..|.+...++ +....+.+..++|+.+-|+ -+.-|++++-|.+++.|.
T Consensus 320 -~lftsgg~Dgsvvh~~v~~~~p----------~~~i~~AHd~~iwsl~~hP----------lGhil~tgsnd~t~rfw~ 378 (464)
T KOG0284|consen 320 -SLFTSGGSDGSVVHWVVGLEEP----------LGEIPPAHDGEIWSLAYHP----------LGHILATGSNDRTVRFWT 378 (464)
T ss_pred -cceeeccCCCceEEEecccccc----------ccCCCcccccceeeeeccc----------cceeEeecCCCcceeeec
Confidence 5999999999999999985554 2333444556778776643 335688888899999996
Q ss_pred E
Q 019349 319 F 319 (342)
Q Consensus 319 ~ 319 (342)
-
T Consensus 379 r 379 (464)
T KOG0284|consen 379 R 379 (464)
T ss_pred c
Confidence 4
No 14
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=1.2e-30 Score=215.13 Aligned_cols=279 Identities=14% Similarity=0.139 Sum_probs=214.1
Q ss_pred CCCCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCc---EEEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCe
Q 019349 1 MSNQSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGR---LCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRR 76 (342)
Q Consensus 1 ~~~~~~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~ 76 (342)
|..+.+++.|+.+.|+|+|.+||+|+.|- +.+|+..... .....|.+.+.-+.+..+++.++.+|. |++
T Consensus 41 m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gt-------Dk~ 113 (338)
T KOG0265|consen 41 MLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGT-------DKT 113 (338)
T ss_pred hhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecC-------Cce
Confidence 45678999999999999999999987665 7999854331 223345566666677778888877775 999
Q ss_pred EEEEECCCCcEEEEEecCCc-eEEEEEcCCe-EEEEE---CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEE
Q 019349 77 LCLFNTTTGTALRELNFLTS-ILAVRLNKKR-LVIVL---REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLA 151 (342)
Q Consensus 77 i~iwd~~~~~~~~~~~~~~~-v~~i~~~~~~-~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 151 (342)
|+.||+++|+++..++.+.. |..+...+-+ .++++ |+++++||++....++++ .+...+.++.+..++..+.
T Consensus 114 v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~---~~kyqltAv~f~d~s~qv~ 190 (338)
T KOG0265|consen 114 VRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTF---ENKYQLTAVGFKDTSDQVI 190 (338)
T ss_pred EEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhcc---ccceeEEEEEeccccccee
Confidence 99999999999998876654 4555544333 33333 789999999988766655 3456688889888888888
Q ss_pred EeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCC----eeEEEeccCcCc--e
Q 019349 152 VPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEA----TKSYSFRRGTYP--S 225 (342)
Q Consensus 152 ~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~----~~~~~~~~~~~~--~ 225 (342)
+++ -|+.|++||++..+...++.+|.++|+.|..+|+|.++.+-+-|.+ +|+||++.- .++..+..+.+. .
T Consensus 191 sgg--Idn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~t-vrvwd~rp~~p~~R~v~if~g~~hnfek 267 (338)
T KOG0265|consen 191 SGG--IDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNT-VRVWDVRPFAPSQRCVKIFQGHIHNFEK 267 (338)
T ss_pred ecc--ccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccce-EEEEEecccCCCCceEEEeecchhhhhh
Confidence 888 6899999999999999999999999999999999999999999987 599999743 235666544432 2
Q ss_pred eEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEE
Q 019349 226 TIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASV 305 (342)
Q Consensus 226 ~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 305 (342)
+....+|+|+++ ++.+|+.|..+++||.....- --.+| +|...+..+.|.|..+-|
T Consensus 268 nlL~cswsp~~~---~i~ags~dr~vyvwd~~~r~~-----------lyklp----------Gh~gsvn~~~Fhp~e~ii 323 (338)
T KOG0265|consen 268 NLLKCSWSPNGT---KITAGSADRFVYVWDTTSRRI-----------LYKLP----------GHYGSVNEVDFHPTEPII 323 (338)
T ss_pred hcceeeccCCCC---ccccccccceEEEeecccccE-----------EEEcC----------CcceeEEEeeecCCCcEE
Confidence 356789999999 999999999999999654321 11122 233344455566666889
Q ss_pred EEEEeCCcEEE
Q 019349 306 SVITYNGYFVE 316 (342)
Q Consensus 306 ~~~~~dg~v~~ 316 (342)
.++++|.+++.
T Consensus 324 ls~~sdk~i~l 334 (338)
T KOG0265|consen 324 LSCSSDKTIYL 334 (338)
T ss_pred EEeccCceeEe
Confidence 99999998875
No 15
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.98 E-value=6.2e-29 Score=216.31 Aligned_cols=277 Identities=17% Similarity=0.229 Sum_probs=211.8
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcEEEEE--eeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEE
Q 019349 4 QSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYER--AVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLF 80 (342)
Q Consensus 4 ~~~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iw 80 (342)
..+..+|.+++|+|++++|++++.++ +++|++.+++..... +...+..+.+.++.+.+++++. ++.|++|
T Consensus 6 ~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-------~~~i~i~ 78 (289)
T cd00200 6 KGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSS-------DKTIRLW 78 (289)
T ss_pred cccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcC-------CCeEEEE
Confidence 46789999999999999999998766 699999887654433 3344545666666666666653 8999999
Q ss_pred ECCCCcEEEEEecC-CceEEEEEcCCe--EEEEE-CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCC
Q 019349 81 NTTTGTALRELNFL-TSILAVRLNKKR--LVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPAST 156 (342)
Q Consensus 81 d~~~~~~~~~~~~~-~~v~~i~~~~~~--~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 156 (342)
|..+++.+..+..+ ..+.++.++++. ++.+. ++.+++||+.+++....+..+. ..+.++.+++++.++++++
T Consensus 79 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~-- 154 (289)
T cd00200 79 DLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHT--DWVNSVAFSPDGTFVASSS-- 154 (289)
T ss_pred EcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCC--CcEEEEEEcCcCCEEEEEc--
Confidence 99988777776644 489999998863 33334 7899999999888877776433 3567777777777777765
Q ss_pred CccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCC
Q 019349 157 TKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSM 236 (342)
Q Consensus 157 ~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~ 236 (342)
.+|.|++||+++++.+..+..|..+|.+++|+|+++.|++++.||. +++||+++++.+..+.. +...+.+++|+|++
T Consensus 155 ~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~-i~i~d~~~~~~~~~~~~--~~~~i~~~~~~~~~ 231 (289)
T cd00200 155 QDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGT-IKLWDLSTGKCLGTLRG--HENGVNSVAFSPDG 231 (289)
T ss_pred CCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCc-EEEEECCCCceecchhh--cCCceEEEEEcCCC
Confidence 5899999999999988899999999999999999999999999997 58999999888777643 24469999999998
Q ss_pred CcccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEEEEEEeCCcEEE
Q 019349 237 QFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVE 316 (342)
Q Consensus 237 ~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~ 316 (342)
. ++++++.||.|++|++.......... ..........|++ +++.|++++.||.+++
T Consensus 232 ~---~~~~~~~~~~i~i~~~~~~~~~~~~~-------~~~~~i~~~~~~~--------------~~~~l~~~~~d~~i~i 287 (289)
T cd00200 232 Y---LLASGSEDGTIRVWDLRTGECVQTLS-------GHTNSVTSLAWSP--------------DGKRLASGSADGTIRI 287 (289)
T ss_pred c---EEEEEcCCCcEEEEEcCCceeEEEcc-------ccCCcEEEEEECC--------------CCCEEEEecCCCeEEe
Confidence 7 88888889999999998654322111 1111111123333 3478999999999999
Q ss_pred EE
Q 019349 317 YI 318 (342)
Q Consensus 317 ~~ 318 (342)
|+
T Consensus 288 w~ 289 (289)
T cd00200 288 WD 289 (289)
T ss_pred cC
Confidence 84
No 16
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.98 E-value=1e-29 Score=214.11 Aligned_cols=287 Identities=16% Similarity=0.143 Sum_probs=221.9
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcEEEEEee--CCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEE
Q 019349 4 QSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAV--GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLF 80 (342)
Q Consensus 4 ~~~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iw 80 (342)
..|.+-|+|+++.|.+++|++|+.|+ ++|||+.++++...... ..+.-+.+..-.-+++.++ .|+.|+.|
T Consensus 148 ~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~g-------edk~VKCw 220 (460)
T KOG0285|consen 148 SGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAG-------EDKQVKCW 220 (460)
T ss_pred hhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEec-------CCCeeEEE
Confidence 45677899999999999999999887 59999999988877643 4444455555556666655 48999999
Q ss_pred ECCCCcEEEEEe-cCCceEEEEEcCCeEEEEE---CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCC
Q 019349 81 NTTTGTALRELN-FLTSILAVRLNKKRLVIVL---REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPAST 156 (342)
Q Consensus 81 d~~~~~~~~~~~-~~~~v~~i~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 156 (342)
|++..+.|+.+. +-+.|++++++|...++++ |.++++||+++...+..+..|.++..-+.+. +-...+++++
T Consensus 221 DLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~--~~dpqvit~S-- 296 (460)
T KOG0285|consen 221 DLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQ--PTDPQVITGS-- 296 (460)
T ss_pred echhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEee--cCCCceEEec--
Confidence 999999988764 4468999999987655554 7799999999999999998887765443333 3233566666
Q ss_pred CccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCC
Q 019349 157 TKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSM 236 (342)
Q Consensus 157 ~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~ 236 (342)
.|++|++||++.++...++..|+..|.+++.+|....+|++|.|. |+-|++..|..+..+.. +.+.|++|+.+.|+
T Consensus 297 ~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dn--ik~w~~p~g~f~~nlsg--h~~iintl~~nsD~ 372 (460)
T KOG0285|consen 297 HDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDN--IKQWKLPEGEFLQNLSG--HNAIINTLSVNSDG 372 (460)
T ss_pred CCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCcc--ceeccCCccchhhcccc--ccceeeeeeeccCc
Confidence 699999999999999999999999999999999999999999995 68999999998888643 46779999999998
Q ss_pred CcccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEEEEEEeCCcEEE
Q 019349 237 QFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVE 316 (342)
Q Consensus 237 ~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~ 316 (342)
++++|+++|.+.+||-+.+..-++.+ .-..|... -+ ...+++..|...+.+|+++..|.+|++
T Consensus 373 ----v~~~G~dng~~~fwdwksg~nyQ~~~------t~vqpGSl---~s----EagI~as~fDktg~rlit~eadKtIk~ 435 (460)
T KOG0285|consen 373 ----VLVSGGDNGSIMFWDWKSGHNYQRGQ------TIVQPGSL---ES----EAGIFASCFDKTGSRLITGEADKTIKM 435 (460)
T ss_pred ----eEEEcCCceEEEEEecCcCccccccc------ccccCCcc---cc----ccceeEEeecccCceEEeccCCcceEE
Confidence 69999999999999998765432100 01111111 00 011233344555689999999999999
Q ss_pred EEEecC
Q 019349 317 YIFSIN 322 (342)
Q Consensus 317 ~~~~~~ 322 (342)
|.-|..
T Consensus 436 ~keDe~ 441 (460)
T KOG0285|consen 436 YKEDEH 441 (460)
T ss_pred Eecccc
Confidence 987654
No 17
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=1.7e-28 Score=244.15 Aligned_cols=286 Identities=14% Similarity=0.147 Sum_probs=201.9
Q ss_pred CCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCC----cE----EEEE-eeCCEEEEEEcCC-CCeEEEEcCCCCCCCCC
Q 019349 6 SSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTG----RL----CYER-AVGAFSIVEMLYS-SSLLAIVGAGEQPSLSP 74 (342)
Q Consensus 6 ~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~----~~----~~~~-~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~d 74 (342)
+...|.+++|+|+|++||+|+.++ ++|||+... .. .... ....+..+.+... .+.++.++ .|
T Consensus 482 ~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~-------~D 554 (793)
T PLN00181 482 SSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSN-------FE 554 (793)
T ss_pred CCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEe-------CC
Confidence 677899999999999999998877 699997542 10 1111 1233444555433 34555444 48
Q ss_pred CeEEEEECCCCcEEEEEe-cCCceEEEEEcC-C--eEEEEE-CCeEEEEECCCCceeeEEeCCCCCceEEEEee-CCCcc
Q 019349 75 RRLCLFNTTTGTALRELN-FLTSILAVRLNK-K--RLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSP-SLNAC 148 (342)
Q Consensus 75 ~~i~iwd~~~~~~~~~~~-~~~~v~~i~~~~-~--~~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 148 (342)
++|++||+.+++.+..+. +...|.+++|++ + .++.++ |+.|++||+.+++.+..+..+ ..++++.+ .+++.
T Consensus 555 g~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~---~~v~~v~~~~~~g~ 631 (793)
T PLN00181 555 GVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK---ANICCVQFPSESGR 631 (793)
T ss_pred CeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC---CCeEEEEEeCCCCC
Confidence 999999999998888775 455899999985 3 333444 889999999999888887643 23556655 35677
Q ss_pred EEEEeCCCCccEEEEEEccCCc-eeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCC------eeEEEeccC
Q 019349 149 FLAVPASTTKGSVLVYNVMELH-SHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEA------TKSYSFRRG 221 (342)
Q Consensus 149 ~l~~~~~~~~g~i~iwd~~~~~-~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~------~~~~~~~~~ 221 (342)
.+++++ .||.|++||+++.+ ++..+.+|...|+++.|. ++.+|+++|.|++ |++||+..+ +.+..+..
T Consensus 632 ~latgs--~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~-ikiWd~~~~~~~~~~~~l~~~~g- 706 (793)
T PLN00181 632 SLAFGS--ADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNT-LKLWDLSMSISGINETPLHSFMG- 706 (793)
T ss_pred EEEEEe--CCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCE-EEEEeCCCCccccCCcceEEEcC-
Confidence 888887 68999999998765 567788999999999997 7889999999998 589999743 45666643
Q ss_pred cCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCc-cccccccccccccccccccccceeeeccCCCc
Q 019349 222 TYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRT-SSILGSILPESVNEVLDPADHHVLRNAFPAGV 300 (342)
Q Consensus 222 ~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (342)
+...+.+++|+|++. +|++|+.|++|++|+.....+....... .....+. ....+...+..+.+.+
T Consensus 707 -h~~~i~~v~~s~~~~---~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~---------~~~~~~~~V~~v~ws~ 773 (793)
T PLN00181 707 -HTNVKNFVGLSVSDG---YIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGL---------EVDDASQFISSVCWRG 773 (793)
T ss_pred -CCCCeeEEEEcCCCC---EEEEEeCCCEEEEEECCCCCceEEEecccCCccccc---------ccCCCCcEEEEEEEcC
Confidence 345588999999998 9999999999999997655432110000 0000000 0001111222333344
Q ss_pred cccEEEEEEeCCcEEEEEE
Q 019349 301 KRASVSVITYNGYFVEYIF 319 (342)
Q Consensus 301 ~~~~l~~~~~dg~v~~~~~ 319 (342)
++..|++++.||.|++|++
T Consensus 774 ~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 774 QSSTLVAANSTGNIKILEM 792 (793)
T ss_pred CCCeEEEecCCCcEEEEec
Confidence 4589999999999999986
No 18
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=7.5e-29 Score=230.88 Aligned_cols=279 Identities=16% Similarity=0.232 Sum_probs=216.6
Q ss_pred CCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCc--EEEEE--eeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEE
Q 019349 6 SSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGR--LCYER--AVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLF 80 (342)
Q Consensus 6 ~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iw 80 (342)
+...|.++.|+++|+.|++++.++ +++|+....+ +.... +...+..+.+.+++.+++.++ .|.+|+||
T Consensus 158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s-------~D~tiriw 230 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGS-------DDKTLRIW 230 (456)
T ss_pred ccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEec-------CCceEEEe
Confidence 367899999999999999987777 5999997666 44443 445666677777777665554 59999999
Q ss_pred EC-CCCcEEEEEe-cCCceEEEEEcCCeEEEEE---CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCC
Q 019349 81 NT-TTGTALRELN-FLTSILAVRLNKKRLVIVL---REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPAS 155 (342)
Q Consensus 81 d~-~~~~~~~~~~-~~~~v~~i~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 155 (342)
|+ ..+.++.++. |...|.+++|+++...+++ |++|+|||+++++++..+..|.. .+.++++++++.++++++
T Consensus 231 d~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~--~is~~~f~~d~~~l~s~s- 307 (456)
T KOG0266|consen 231 DLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSD--GISGLAFSPDGNLLVSAS- 307 (456)
T ss_pred eccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCC--ceEEEEECCCCCEEEEcC-
Confidence 99 5557777775 5568999999998744433 88999999999999999987766 577778888899999886
Q ss_pred CCccEEEEEEccCCc--eeEEEecccCC--eeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCc-eeEEEE
Q 019349 156 TTKGSVLVYNVMELH--SHCEIDAHQAP--LAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYP-STIFSL 230 (342)
Q Consensus 156 ~~~g~i~iwd~~~~~--~~~~~~~h~~~--v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~-~~v~~l 230 (342)
.||.|++||+.++. ++..+..+..+ ++++.|+|+|.+|++++.|++ +++||+..+..+..+..+... ..+.+.
T Consensus 308 -~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~-~~~w~l~~~~~~~~~~~~~~~~~~~~~~ 385 (456)
T KOG0266|consen 308 -YDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRT-LKLWDLRSGKSVGTYTGHSNLVRCIFSP 385 (456)
T ss_pred -CCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCe-EEEEEccCCcceeeecccCCcceeEecc
Confidence 59999999999998 56777777665 999999999999999999987 599999999988887654332 245666
Q ss_pred EEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCcccccccc-ccccccccccccccceeeeccCCCccccEEEEEE
Q 019349 231 SFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSI-LPESVNEVLDPADHHVLRNAFPAGVKRASVSVIT 309 (342)
Q Consensus 231 ~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 309 (342)
.+++.++ ++.+|+.|+.|++|++......... .++ .+......|++.. +.+++.+
T Consensus 386 ~~~~~~~---~i~sg~~d~~v~~~~~~s~~~~~~l-------~~h~~~~~~~~~~~~~~--------------~~~~s~s 441 (456)
T KOG0266|consen 386 TLSTGGK---LIYSGSEDGSVYVWDSSSGGILQRL-------EGHSKAAVSDLSSHPTE--------------NLIASSS 441 (456)
T ss_pred cccCCCC---eEEEEeCCceEEEEeCCccchhhhh-------cCCCCCceeccccCCCc--------------CeeeecC
Confidence 6788999 9999999999999999876544321 112 2222334555544 6777777
Q ss_pred --eCCcEEEEEEe
Q 019349 310 --YNGYFVEYIFS 320 (342)
Q Consensus 310 --~dg~v~~~~~~ 320 (342)
.|+.+++|..+
T Consensus 442 ~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 442 FEGDGLIRLWKYD 454 (456)
T ss_pred cCCCceEEEecCC
Confidence 68999999653
No 19
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.97 E-value=9.8e-30 Score=220.93 Aligned_cols=279 Identities=14% Similarity=0.194 Sum_probs=218.1
Q ss_pred CCCCeEEEEEcCCCC-EEEEEcCCc-EEEEeCCC--C----cEEEE------E----eeCCEEEEEEcCCCCeEEEEcCC
Q 019349 6 SSYPVFFVSFNQDNS-GFALSTKDG-FKIFDSST--G----RLCYE------R----AVGAFSIVEMLYSSSLLAIVGAG 67 (342)
Q Consensus 6 ~~~~V~~l~fs~d~~-~la~g~~~g-~~v~d~~~--~----~~~~~------~----~~~~~~~~~~~~~~~~~~~~~~g 67 (342)
++.+|.+.+|+|-.. .|++|+.+. .|+|++.. . ++.+. . ....+..++|..+++.+++..
T Consensus 177 ~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~-- 254 (524)
T KOG0273|consen 177 HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGS-- 254 (524)
T ss_pred CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEee--
Confidence 788999999999776 788887775 59999863 1 11111 0 125677788888888888765
Q ss_pred CCCCCCCCeEEEEECCCCcEEEEEe-cCCceEEEEEcCCeEEEEE---CCeEEEEECCCCceeeEEeCCCCCceEEEEee
Q 019349 68 EQPSLSPRRLCLFNTTTGTALRELN-FLTSILAVRLNKKRLVIVL---REKTYIYDANTLAILDTIDTVPNLKGLCAFSP 143 (342)
Q Consensus 68 ~~~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~i~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 143 (342)
.++.+++|+.. |..+.++. +.++|.++.|++++.++++ |+++.+||..++...+.+..+..+. ..+.+
T Consensus 255 -----~~G~~riw~~~-G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~--lDVdW 326 (524)
T KOG0273|consen 255 -----EDGEARIWNKD-GNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPA--LDVDW 326 (524)
T ss_pred -----cCcEEEEEecC-chhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCc--cceEE
Confidence 48999999964 55565554 5679999999998755544 8999999999998888887766652 12222
Q ss_pred CCCccEEEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcC
Q 019349 144 SLNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTY 223 (342)
Q Consensus 144 ~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~ 223 (342)
-. ..-+++++ .||.|+|+.+....++.++.+|.++|++|.|+|.|.+|+|+|.|+++ |||..........++.+
T Consensus 327 ~~-~~~F~ts~--td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~Tl-kiWs~~~~~~~~~l~~H-- 400 (524)
T KOG0273|consen 327 QS-NDEFATSS--TDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTL-KIWSMGQSNSVHDLQAH-- 400 (524)
T ss_pred ec-CceEeecC--CCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCee-EeeecCCCcchhhhhhh--
Confidence 22 22566666 69999999999999999999999999999999999999999999985 99999888877777543
Q ss_pred ceeEEEEEEecCCC------cccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccC
Q 019349 224 PSTIFSLSFGQSMQ------FQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFP 297 (342)
Q Consensus 224 ~~~v~~l~fs~d~~------~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (342)
..+|+.+.|+|++. .+..|++++.|++|++||+..+.+.. .+..|...++.++
T Consensus 401 skei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~---------------------~f~kH~~pVysva 459 (524)
T KOG0273|consen 401 SKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIH---------------------TLMKHQEPVYSVA 459 (524)
T ss_pred ccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeE---------------------eeccCCCceEEEE
Confidence 55699999998642 11389999999999999999876632 2345666778888
Q ss_pred CCccccEEEEEEeCCcEEEEEEec
Q 019349 298 AGVKRASVSVITYNGYFVEYIFSI 321 (342)
Q Consensus 298 ~~~~~~~l~~~~~dg~v~~~~~~~ 321 (342)
|.+.+.++++|+.||.|++|+...
T Consensus 460 fS~~g~ylAsGs~dg~V~iws~~~ 483 (524)
T KOG0273|consen 460 FSPNGRYLASGSLDGCVHIWSTKT 483 (524)
T ss_pred ecCCCcEEEecCCCCeeEeccccc
Confidence 899899999999999999998654
No 20
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.97 E-value=7.8e-29 Score=202.53 Aligned_cols=237 Identities=14% Similarity=0.166 Sum_probs=183.9
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcEE--EEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEE
Q 019349 4 QSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLC--YERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLF 80 (342)
Q Consensus 4 ~~~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iw 80 (342)
..|...|..+..++||++.++++.|+ +|+||+.+++.. +..|...+..+++..+...+ +++ +.|++|++|
T Consensus 60 ~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qi--vSG-----SrDkTiklw 132 (315)
T KOG0279|consen 60 TGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQI--VSG-----SRDKTIKLW 132 (315)
T ss_pred eccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCcee--ecC-----CCcceeeee
Confidence 45778899999999999999998887 599999998544 45555566666665554444 444 369999999
Q ss_pred ECCCCcEEEEEe-c--CCceEEEEEcCC--eEEEEE---CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEE
Q 019349 81 NTTTGTALRELN-F--LTSILAVRLNKK--RLVIVL---REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAV 152 (342)
Q Consensus 81 d~~~~~~~~~~~-~--~~~v~~i~~~~~--~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 152 (342)
|...+ +..++. . ..-|.++.|+|+ ..++++ |+++++||+++.+....+..+.+ .+..+..+|||..+++
T Consensus 133 nt~g~-ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~--~v~t~~vSpDGslcas 209 (315)
T KOG0279|consen 133 NTLGV-CKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSG--YVNTVTVSPDGSLCAS 209 (315)
T ss_pred eeccc-EEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccc--cEEEEEECCCCCEEec
Confidence 98754 444443 2 447999999987 444444 89999999999888877766555 4556666788889998
Q ss_pred eCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCc-------Cce
Q 019349 153 PASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGT-------YPS 225 (342)
Q Consensus 153 ~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~-------~~~ 225 (342)
+| .||.+.+||++.++.+.++. |..+|++++|+|+.-.|+.+-..+ |||||+.++..+.+++... ...
T Consensus 210 Gg--kdg~~~LwdL~~~k~lysl~-a~~~v~sl~fspnrywL~~at~~s--IkIwdl~~~~~v~~l~~d~~g~s~~~~~~ 284 (315)
T KOG0279|consen 210 GG--KDGEAMLWDLNEGKNLYSLE-AFDIVNSLCFSPNRYWLCAATATS--IKIWDLESKAVVEELKLDGIGPSSKAGDP 284 (315)
T ss_pred CC--CCceEEEEEccCCceeEecc-CCCeEeeEEecCCceeEeeccCCc--eEEEeccchhhhhhccccccccccccCCc
Confidence 88 69999999999999987764 788999999999977777776543 6899999998887765321 122
Q ss_pred eEEEEEEecCCCcccEEEEEeCCCcEEEEecCC
Q 019349 226 TIFSLSFGQSMQFQDILVATSSSGSLHVFSPGF 258 (342)
Q Consensus 226 ~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~ 258 (342)
...+++|++||. .|.+|-.|+.|++|.+..
T Consensus 285 ~clslaws~dG~---tLf~g~td~~irv~qv~~ 314 (315)
T KOG0279|consen 285 ICLSLAWSADGQ---TLFAGYTDNVIRVWQVAK 314 (315)
T ss_pred EEEEEEEcCCCc---EEEeeecCCcEEEEEeec
Confidence 367899999999 999999999999998753
No 21
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.97 E-value=8.3e-29 Score=199.36 Aligned_cols=267 Identities=12% Similarity=0.128 Sum_probs=202.2
Q ss_pred CEEEEEc-CCcEEEEeCCCCcEEEEEe--eCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCc--EEEEEecC
Q 019349 20 SGFALST-KDGFKIFDSSTGRLCYERA--VGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGT--ALRELNFL 94 (342)
Q Consensus 20 ~~la~g~-~~g~~v~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~--~~~~~~~~ 94 (342)
-+|++++ +.++|+|...+|...+..+ ...+..+++.++...++.++ ...||+||+.++. ++.+++.+
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~--------~qhvRlyD~~S~np~Pv~t~e~h 82 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAG--------NQHVRLYDLNSNNPNPVATFEGH 82 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhcc--------CCeeEEEEccCCCCCceeEEecc
Confidence 3566654 5578999999998876654 36677788888887777665 4699999998765 57777765
Q ss_pred -CceEEEEEcCCeEEEEE---CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCc
Q 019349 95 -TSILAVRLNKKRLVIVL---REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELH 170 (342)
Q Consensus 95 -~~v~~i~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~ 170 (342)
..|.++.|..++....+ |++++|||++...+.+.++.. ..+..+.++|+..-|+++. .+|.|++||+.+..
T Consensus 83 ~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~---spVn~vvlhpnQteLis~d--qsg~irvWDl~~~~ 157 (311)
T KOG0315|consen 83 TKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHN---SPVNTVVLHPNQTELISGD--QSGNIRVWDLGENS 157 (311)
T ss_pred CCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccCC---CCcceEEecCCcceEEeec--CCCcEEEEEccCCc
Confidence 68999999888766655 889999999998877777543 3455666677777888776 78999999999876
Q ss_pred eeEEE-ecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEecc----CcCceeEEEEEEecCCCcccEEEEE
Q 019349 171 SHCEI-DAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRR----GTYPSTIFSLSFGQSMQFQDILVAT 245 (342)
Q Consensus 171 ~~~~~-~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~----~~~~~~v~~l~fs~d~~~~~~l~~~ 245 (342)
+...+ +....+|.++...|||.+|+.+-..|+. .+|++.+++....+.. ..+...+..+.||||++ +||++
T Consensus 158 c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~c-yvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k---~lat~ 233 (311)
T KOG0315|consen 158 CTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNC-YVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVK---YLATC 233 (311)
T ss_pred cccccCCCCCcceeeEEEcCCCcEEEEecCCccE-EEEEccCCCccccceEhhheecccceEEEEEECCCCc---EEEee
Confidence 65443 4556789999999999999999999997 5999987653322211 13455688999999999 99999
Q ss_pred eCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEEEEEEeCCcEEEEEEecCC
Q 019349 246 SSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSINN 323 (342)
Q Consensus 246 s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~~~~~~ 323 (342)
|.|.+++||+.+..-+. ...+......+|+.+ |..++.+|+++++|+.+++|++...+
T Consensus 234 ssdktv~iwn~~~~~kl----------e~~l~gh~rWvWdc~----------FS~dg~YlvTassd~~~rlW~~~~~k 291 (311)
T KOG0315|consen 234 SSDKTVKIWNTDDFFKL----------ELVLTGHQRWVWDCA----------FSADGEYLVTASSDHTARLWDLSAGK 291 (311)
T ss_pred cCCceEEEEecCCceee----------EEEeecCCceEEeee----------eccCccEEEecCCCCceeecccccCc
Confidence 99999999998876211 111112223456554 36677999999999999999876543
No 22
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=9.6e-29 Score=197.55 Aligned_cols=275 Identities=14% Similarity=0.175 Sum_probs=201.6
Q ss_pred CCCCCeEEEEEcCCCCE-EEEEcCCcEEEEeCCCCcEEEEEeeCCEEE--EEEcCCCCeEEEEcCCCCCCCCCCeEEEEE
Q 019349 5 SSSYPVFFVSFNQDNSG-FALSTKDGFKIFDSSTGRLCYERAVGAFSI--VEMLYSSSLLAIVGAGEQPSLSPRRLCLFN 81 (342)
Q Consensus 5 ~~~~~V~~l~fs~d~~~-la~g~~~g~~v~d~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd 81 (342)
-..++|+.+.||-||++ |++|++..+|+||+..+.++.+...++-.+ +...++...++.+|+ |+.+.+||
T Consensus 15 ~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~Gg-------Dk~v~vwD 87 (307)
T KOG0316|consen 15 CAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGG-------DKAVQVWD 87 (307)
T ss_pred ccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCC-------CceEEEEE
Confidence 35678999999999998 556677789999999998876655544444 445555666666655 89999999
Q ss_pred CCCCcEEEEEecC-CceEEEEEcCCeEEEEE---CCeEEEEECCCC--ceeeEEeCCCCCceEEEEeeCCCccEEEEeCC
Q 019349 82 TTTGTALRELNFL-TSILAVRLNKKRLVIVL---REKTYIYDANTL--AILDTIDTVPNLKGLCAFSPSLNACFLAVPAS 155 (342)
Q Consensus 82 ~~~~~~~~~~~~~-~~v~~i~~~~~~~~~~~---d~~i~i~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 155 (342)
..+|+.++.+..+ ..|..+.|+.+.-++++ |.++++||.++. ++++.+.... .++.++.... ..|+. |+
T Consensus 88 V~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~--D~V~Si~v~~--heIva-GS 162 (307)
T KOG0316|consen 88 VNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAK--DGVSSIDVAE--HEIVA-GS 162 (307)
T ss_pred cccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhc--CceeEEEecc--cEEEe-ec
Confidence 9999999998754 59999999998877766 889999999764 5666665433 3455544432 24444 44
Q ss_pred CCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecC
Q 019349 156 TTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQS 235 (342)
Q Consensus 156 ~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d 235 (342)
.||+++.||++.+....-.- ..||+|+.|++||+.++.++-|++ +|+.|-.+|+++..+..+....--...+|+..
T Consensus 163 -~DGtvRtydiR~G~l~sDy~--g~pit~vs~s~d~nc~La~~l~st-lrLlDk~tGklL~sYkGhkn~eykldc~l~qs 238 (307)
T KOG0316|consen 163 -VDGTVRTYDIRKGTLSSDYF--GHPITSVSFSKDGNCSLASSLDST-LRLLDKETGKLLKSYKGHKNMEYKLDCCLNQS 238 (307)
T ss_pred -cCCcEEEEEeecceeehhhc--CCcceeEEecCCCCEEEEeeccce-eeecccchhHHHHHhcccccceeeeeeeeccc
Confidence 79999999999998665443 458999999999999999999987 59999999999988865543333455678887
Q ss_pred CCcccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEEEEEEeCCcEE
Q 019349 236 MQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFV 315 (342)
Q Consensus 236 ~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~ 315 (342)
.. .+++||+||.|++||+.......+.... ..+.+..+.+.|....++++...+.+-
T Consensus 239 dt---hV~sgSEDG~Vy~wdLvd~~~~sk~~~~--------------------~~v~v~dl~~hp~~~~f~~A~~~~~~~ 295 (307)
T KOG0316|consen 239 DT---HVFSGSEDGKVYFWDLVDETQISKLSVV--------------------STVIVTDLSCHPTMDDFITATGHGDLF 295 (307)
T ss_pred ce---eEEeccCCceEEEEEeccceeeeeeccC--------------------CceeEEeeecccCccceeEecCCceec
Confidence 77 8999999999999999766532211100 011223344455557777777766555
Q ss_pred EEE
Q 019349 316 EYI 318 (342)
Q Consensus 316 ~~~ 318 (342)
.+.
T Consensus 296 ~~~ 298 (307)
T KOG0316|consen 296 WYQ 298 (307)
T ss_pred eee
Confidence 443
No 23
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.9e-29 Score=212.77 Aligned_cols=277 Identities=13% Similarity=0.135 Sum_probs=214.6
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcEEEEEee--CCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEE
Q 019349 4 QSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAV--GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLF 80 (342)
Q Consensus 4 ~~~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iw 80 (342)
..+..+|..+-|.|+-..++++++++ +++||..++++...... ..+..+.+...+.+++.++. |=.+++|
T Consensus 105 ~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSs-------Dl~~~LW 177 (406)
T KOG0295|consen 105 AGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSS-------DLSAKLW 177 (406)
T ss_pred hccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCC-------ccchhhe
Confidence 35677899999999999999998887 69999999988655444 34444555555666666654 5669999
Q ss_pred ECCC-CcEEEEE-ecCCceEEEEEcCC--eEEEEE-CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCC
Q 019349 81 NTTT-GTALREL-NFLTSILAVRLNKK--RLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPAS 155 (342)
Q Consensus 81 d~~~-~~~~~~~-~~~~~v~~i~~~~~--~~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 155 (342)
|..+ .+++... .+...|.++++-|. .++.++ |++|+.|++.++-+++++..+.. -+-.+.++.|+..+|+++
T Consensus 178 d~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~e--wvr~v~v~~DGti~As~s- 254 (406)
T KOG0295|consen 178 DFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSE--WVRMVRVNQDGTIIASCS- 254 (406)
T ss_pred eHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchH--hEEEEEecCCeeEEEecC-
Confidence 9876 4444433 44557888888654 445555 89999999999999999977655 344566778888999888
Q ss_pred CCccEEEEEEccCCceeEEEecccCCeeEEEECCC---------------CCEEEEEeCCCcEEEEEEcCCCeeEEEecc
Q 019349 156 TTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSN---------------GMYIATASEQGTIIRVFLVSEATKSYSFRR 220 (342)
Q Consensus 156 ~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~d---------------g~~lat~s~dg~~irlwd~~~~~~~~~~~~ 220 (342)
.|.+|++|-+.++++...+..|+.+|.|++|-|. |.++.++|.|++ ||+||+.+|.++.++..
T Consensus 255 -~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDkt-Ik~wdv~tg~cL~tL~g 332 (406)
T KOG0295|consen 255 -NDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKT-IKIWDVSTGMCLFTLVG 332 (406)
T ss_pred -CCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccce-EEEEeccCCeEEEEEec
Confidence 6899999999999999999999999999999654 358999999997 69999999999999864
Q ss_pred CcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCc
Q 019349 221 GTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGV 300 (342)
Q Consensus 221 ~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (342)
+ ..-|..++|+|-|+ ||+++.+|+++++||++.....+...-+.. | +..+.|..
T Consensus 333 h--dnwVr~~af~p~Gk---yi~ScaDDktlrvwdl~~~~cmk~~~ah~h---------f------------vt~lDfh~ 386 (406)
T KOG0295|consen 333 H--DNWVRGVAFSPGGK---YILSCADDKTLRVWDLKNLQCMKTLEAHEH---------F------------VTSLDFHK 386 (406)
T ss_pred c--cceeeeeEEcCCCe---EEEEEecCCcEEEEEeccceeeeccCCCcc---------e------------eEEEecCC
Confidence 3 45699999999999 999999999999999998776543221111 1 11222233
Q ss_pred cccEEEEEEeCCcEEEEE
Q 019349 301 KRASVSVITYNGYFVEYI 318 (342)
Q Consensus 301 ~~~~l~~~~~dg~v~~~~ 318 (342)
...++++|+-|-.+++|.
T Consensus 387 ~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 387 TAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred CCceEEeccccceeeeee
Confidence 346999999999999985
No 24
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=3.8e-28 Score=221.70 Aligned_cols=278 Identities=10% Similarity=0.113 Sum_probs=224.2
Q ss_pred CCeEEEEEcCCCCEEEEEcCCcE-EEEeCCCCcEEEEEeeC--CEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCC
Q 019349 8 YPVFFVSFNQDNSGFALSTKDGF-KIFDSSTGRLCYERAVG--AFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTT 84 (342)
Q Consensus 8 ~~V~~l~fs~d~~~la~g~~~g~-~v~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~ 84 (342)
..|++.+|++.-..||+|-..|. .+|++....+++.+..+ .+..+.+...++.+++.+. .-+.+-+|+.++
T Consensus 266 ~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~------klgQLlVweWqs 339 (893)
T KOG0291|consen 266 SKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCS------KLGQLLVWEWQS 339 (893)
T ss_pred cceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCC------ccceEEEEEeec
Confidence 78999999999999999999885 89999999998887664 4555555555889988776 367999999998
Q ss_pred CcEEEEEec-CCceEEEEEcCCeEEEEE---CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccE
Q 019349 85 GTALRELNF-LTSILAVRLNKKRLVIVL---REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGS 160 (342)
Q Consensus 85 ~~~~~~~~~-~~~v~~i~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~ 160 (342)
...+...+. -..+.+++.+||+..+++ |++|+|||..++-++.++..|.. ++.++.+...+..+.+++ -||+
T Consensus 340 EsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts--~Vt~v~f~~~g~~llssS--LDGt 415 (893)
T KOG0291|consen 340 ESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTS--GVTAVQFTARGNVLLSSS--LDGT 415 (893)
T ss_pred cceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCC--ceEEEEEEecCCEEEEee--cCCe
Confidence 888777664 458999999999777666 88999999999999999976655 566677767777888877 6999
Q ss_pred EEEEEccCCceeEEEeccc-CCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcc
Q 019349 161 VLVYNVMELHSHCEIDAHQ-APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQ 239 (342)
Q Consensus 161 i~iwd~~~~~~~~~~~~h~-~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~ 239 (342)
|+.||+......+++.... -...|++..|.|..+..|+.|.--|.+|++++|+++..+.. |.++|.+++|+|++.
T Consensus 416 VRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsG--HEgPVs~l~f~~~~~-- 491 (893)
T KOG0291|consen 416 VRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSG--HEGPVSGLSFSPDGS-- 491 (893)
T ss_pred EEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcC--CCCcceeeEEccccC--
Confidence 9999999999999987643 35789999999999999999987789999999999988854 467899999999999
Q ss_pred cEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEEEEEEeCCcEEEEEE
Q 019349 240 DILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIF 319 (342)
Q Consensus 240 ~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~~ 319 (342)
.|+++|.|.||++||+=...... ..+ + + +--+..+.|.|++..|++++.||.+.+|+.
T Consensus 492 -~LaS~SWDkTVRiW~if~s~~~v---------Etl-~-----i------~sdvl~vsfrPdG~elaVaTldgqItf~d~ 549 (893)
T KOG0291|consen 492 -LLASGSWDKTVRIWDIFSSSGTV---------ETL-E-----I------RSDVLAVSFRPDGKELAVATLDGQITFFDI 549 (893)
T ss_pred -eEEeccccceEEEEEeeccCcee---------eeE-e-----e------ccceeEEEEcCCCCeEEEEEecceEEEEEh
Confidence 99999999999999975332100 000 0 0 001234556777799999999999999976
Q ss_pred ec
Q 019349 320 SI 321 (342)
Q Consensus 320 ~~ 321 (342)
..
T Consensus 550 ~~ 551 (893)
T KOG0291|consen 550 KE 551 (893)
T ss_pred hh
Confidence 43
No 25
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=3.6e-29 Score=211.18 Aligned_cols=238 Identities=16% Similarity=0.189 Sum_probs=203.3
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCC-cE--EEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEE
Q 019349 4 QSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTG-RL--CYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCL 79 (342)
Q Consensus 4 ~~~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~i 79 (342)
.++...|..++|+..|++|++++.|- +++||.++. +. ....+.+.+..+.+.+.+++++.++. |++|+.
T Consensus 147 rGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~sr-------D~tik~ 219 (406)
T KOG0295|consen 147 RGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSR-------DNTIKA 219 (406)
T ss_pred hccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeeccc-------ccceeE
Confidence 46778899999999999999999887 799998774 22 23345678888999999988887765 999999
Q ss_pred EECCCCcEEEEEecCC-ceEEEEEcCCeEEEEE---CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCC----------
Q 019349 80 FNTTTGTALRELNFLT-SILAVRLNKKRLVIVL---REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSL---------- 145 (342)
Q Consensus 80 wd~~~~~~~~~~~~~~-~v~~i~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 145 (342)
|+..+|.++.++..+. -|+.+..+.|+.++++ |.++++|-+.++++...+..|.++....++++..
T Consensus 220 We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~ 299 (406)
T KOG0295|consen 220 WECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATG 299 (406)
T ss_pred EecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccC
Confidence 9999999999987654 7899999999998888 7799999999998777787788876666555421
Q ss_pred --C-ccEEEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCc
Q 019349 146 --N-ACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGT 222 (342)
Q Consensus 146 --~-~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~ 222 (342)
+ +.+++.++ .|++|++||+.++.++.++.+|.+.|..++|+|.|+||+++.+|++ +|+||++++++++.+..
T Consensus 300 ~~~~~~~l~s~S--rDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDkt-lrvwdl~~~~cmk~~~a-- 374 (406)
T KOG0295|consen 300 STNGGQVLGSGS--RDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKT-LRVWDLKNLQCMKTLEA-- 374 (406)
T ss_pred CCCCccEEEeec--ccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCc-EEEEEeccceeeeccCC--
Confidence 1 24566555 6999999999999999999999999999999999999999999998 59999999999998864
Q ss_pred CceeEEEEEEecCCCcccEEEEEeCCCcEEEEec
Q 019349 223 YPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSP 256 (342)
Q Consensus 223 ~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~ 256 (342)
++.-++++.|+.+.. ++++|+-|.++++|..
T Consensus 375 h~hfvt~lDfh~~~p---~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 375 HEHFVTSLDFHKTAP---YVVTGSVDQTVKVWEC 405 (406)
T ss_pred CcceeEEEecCCCCc---eEEeccccceeeeeec
Confidence 355699999999988 9999999999999974
No 26
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.97 E-value=8.7e-28 Score=211.41 Aligned_cols=283 Identities=16% Similarity=0.171 Sum_probs=219.2
Q ss_pred CCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcEEEEE-----eeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCe
Q 019349 3 NQSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYER-----AVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRR 76 (342)
Q Consensus 3 ~~~~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~ 76 (342)
...|..-|+|++|+|||+++|+.+.|+ +.+||-.+++.+... |.+.+..+.|.+++..++++++ |.+
T Consensus 186 ~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~Sa-------Dkt 258 (603)
T KOG0318|consen 186 FREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSA-------DKT 258 (603)
T ss_pred ccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecC-------Cce
Confidence 345666799999999999999877776 799999999887654 4588999999999999999987 899
Q ss_pred EEEEECCCCcEEEEEecCCc----eEEEEEcCCeEEEEE-CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEE
Q 019349 77 LCLFNTTTGTALRELNFLTS----ILAVRLNKKRLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLA 151 (342)
Q Consensus 77 i~iwd~~~~~~~~~~~~~~~----v~~i~~~~~~~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 151 (342)
++|||+.+++++.++..... -.++-|.++.++..+ +|.|.+++..++..++.+..|. ..+.+++.++++.+|.
T Consensus 259 ~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHn--K~ITaLtv~~d~~~i~ 336 (603)
T KOG0318|consen 259 IKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHN--KSITALTVSPDGKTIY 336 (603)
T ss_pred EEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccc--cceeEEEEcCCCCEEE
Confidence 99999999999999887654 345566788877777 9999999999998888876654 4688888888898998
Q ss_pred EeCCCCccEEEEEEccCCcee-----------EEEeccc-----------------------------------------
Q 019349 152 VPASTTKGSVLVYNVMELHSH-----------CEIDAHQ----------------------------------------- 179 (342)
Q Consensus 152 ~~~~~~~g~i~iwd~~~~~~~-----------~~~~~h~----------------------------------------- 179 (342)
+++ .||.|.-||..++..- ..+..++
T Consensus 337 Sgs--yDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~ 414 (603)
T KOG0318|consen 337 SGS--YDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVL 414 (603)
T ss_pred eec--cCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEc
Confidence 887 5899999998654311 1010000
Q ss_pred -----------------------------CCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEE
Q 019349 180 -----------------------------APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSL 230 (342)
Q Consensus 180 -----------------------------~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l 230 (342)
-...+++++|+++.+|.|++||. ++|+.+..++...+-....+.++|+++
T Consensus 415 ~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgk-vhvysl~g~~l~ee~~~~~h~a~iT~v 493 (603)
T KOG0318|consen 415 SDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGK-VHVYSLSGDELKEEAKLLEHRAAITDV 493 (603)
T ss_pred CCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccce-EEEEEecCCcccceeeeecccCCceEE
Confidence 01346889999999999999998 589999876644433333457889999
Q ss_pred EEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEEEEEEe
Q 019349 231 SFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITY 310 (342)
Q Consensus 231 ~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 310 (342)
+||||+. |||++...+.|-+||+...+.... . ..-+........|+|.. ..+++||.
T Consensus 494 aySpd~~---yla~~Da~rkvv~yd~~s~~~~~~---~---w~FHtakI~~~aWsP~n--------------~~vATGSl 550 (603)
T KOG0318|consen 494 AYSPDGA---YLAAGDASRKVVLYDVASREVKTN---R---WAFHTAKINCVAWSPNN--------------KLVATGSL 550 (603)
T ss_pred EECCCCc---EEEEeccCCcEEEEEcccCceecc---e---eeeeeeeEEEEEeCCCc--------------eEEEeccc
Confidence 9999999 999999999999999987665211 1 11112222234677766 78999999
Q ss_pred CCcEEEEEEe
Q 019349 311 NGYFVEYIFS 320 (342)
Q Consensus 311 dg~v~~~~~~ 320 (342)
|-.|++|+++
T Consensus 551 Dt~Viiysv~ 560 (603)
T KOG0318|consen 551 DTNVIIYSVK 560 (603)
T ss_pred cceEEEEEcc
Confidence 9999999875
No 27
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=2.9e-28 Score=197.51 Aligned_cols=259 Identities=15% Similarity=0.176 Sum_probs=195.4
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcEEEEE----eeCCEEEEEEcC-CCCeEEEEcCCCCCCCCCCeE
Q 019349 4 QSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYER----AVGAFSIVEMLY-SSSLLAIVGAGEQPSLSPRRL 77 (342)
Q Consensus 4 ~~~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~~~~~----~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~d~~i 77 (342)
+.+.++|.+++|+.+|+.|++|+.++ +++|+++..++..+. +...+.-+.+.+ .++.++.+++ |++|
T Consensus 17 ~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~-------dk~i 89 (313)
T KOG1407|consen 17 QGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASG-------DKTI 89 (313)
T ss_pred hhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecC-------CceE
Confidence 35677899999999999999998776 599999887655433 223344444443 4567777776 8999
Q ss_pred EEEECCCCcEEEEEecCCceEEEEEcCCeEEEEE---CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeC
Q 019349 78 CLFNTTTGTALRELNFLTSILAVRLNKKRLVIVL---REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPA 154 (342)
Q Consensus 78 ~iwd~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 154 (342)
++||.++++++..+.....-.-+.++|+.-.++. |+.|.+.|.++.+.....+...... -++.. .++..++++.|
T Consensus 90 r~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~n-e~~w~-~~nd~Fflt~G 167 (313)
T KOG1407|consen 90 RIWDIRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVN-EISWN-NSNDLFFLTNG 167 (313)
T ss_pred EEEEeccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceee-eeeec-CCCCEEEEecC
Confidence 9999999999999987776666777776544433 7799999998877665554322211 22333 33444455554
Q ss_pred CCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEec
Q 019349 155 STTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQ 234 (342)
Q Consensus 155 ~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~ 234 (342)
.|+|.|......+++.++++|.....||.|+|+|+++|+||.|.. +-|||+...-++..+.+. .-+|..|+||.
T Consensus 168 ---lG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAl-vSLWD~~ELiC~R~isRl--dwpVRTlSFS~ 241 (313)
T KOG1407|consen 168 ---LGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADAL-VSLWDVDELICERCISRL--DWPVRTLSFSH 241 (313)
T ss_pred ---CceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccce-eeccChhHhhhheeeccc--cCceEEEEecc
Confidence 599999999999999999999999999999999999999999975 689999988777777654 34599999999
Q ss_pred CCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccc
Q 019349 235 SMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPAD 288 (342)
Q Consensus 235 d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (342)
||+ +||++|+|..|-|=+++++...-.. ..-.+.+...|+|..
T Consensus 242 dg~---~lASaSEDh~IDIA~vetGd~~~eI--------~~~~~t~tVAWHPk~ 284 (313)
T KOG1407|consen 242 DGR---MLASASEDHFIDIAEVETGDRVWEI--------PCEGPTFTVAWHPKR 284 (313)
T ss_pred Ccc---eeeccCccceEEeEecccCCeEEEe--------eccCCceeEEecCCC
Confidence 999 9999999999999999888753210 112234566888865
No 28
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.6e-28 Score=219.95 Aligned_cols=243 Identities=14% Similarity=0.215 Sum_probs=195.7
Q ss_pred CCCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcEEEEEeeCCEE--EEEEcCCCCeEEEEcCCCCCCCCCCeEEEEE
Q 019349 5 SSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAVGAFS--IVEMLYSSSLLAIVGAGEQPSLSPRRLCLFN 81 (342)
Q Consensus 5 ~~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd 81 (342)
.....|.++.|+|....+.++--+| +.|||.++..+..+.+...+. ...+....+.+++.+ +|..|++++
T Consensus 11 ~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~Gs-------DD~~IrVfn 83 (794)
T KOG0276|consen 11 SRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGS-------DDMQIRVFN 83 (794)
T ss_pred ccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEec-------CCceEEEEe
Confidence 4678999999999999988887666 799999998887666554333 344444445554443 599999999
Q ss_pred CCCCcEEEEEec-CCceEEEEEcCCeEEEEE--C-CeEEEEECCCC-ceeeEEeCCCCCceEEEEeeCCCccEEEEeCCC
Q 019349 82 TTTGTALRELNF-LTSILAVRLNKKRLVIVL--R-EKTYIYDANTL-AILDTIDTVPNLKGLCAFSPSLNACFLAVPAST 156 (342)
Q Consensus 82 ~~~~~~~~~~~~-~~~v~~i~~~~~~~~~~~--d-~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 156 (342)
..+++.+..++. +..|++|+.+|....+.+ | -.|++||.+.. .+.++++.|.+..-.+++.|. |...+|+++
T Consensus 84 ynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPk-D~ntFaS~s-- 160 (794)
T KOG0276|consen 84 YNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPK-DPNTFASAS-- 160 (794)
T ss_pred cccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCC-Cccceeeee--
Confidence 999999999875 458999999998766654 4 49999999876 667788888775444455443 345667766
Q ss_pred CccEEEEEEccCCceeEEEecccCCeeEEEECCCC--CEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEec
Q 019349 157 TKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNG--MYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQ 234 (342)
Q Consensus 157 ~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg--~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~ 234 (342)
-|++|+||.+.+..+..++++|...|+||.|-+-| .+|+||++|.+ +||||.++.+++.++..+ ..+|..+.|+|
T Consensus 161 LDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~t-iKvWDyQtk~CV~TLeGH--t~Nvs~v~fhp 237 (794)
T KOG0276|consen 161 LDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLT-IKVWDYQTKSCVQTLEGH--TNNVSFVFFHP 237 (794)
T ss_pred ccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCce-EEEeecchHHHHHHhhcc--cccceEEEecC
Confidence 68999999999999999999999999999998755 69999999976 699999999999998654 44699999999
Q ss_pred CCCcccEEEEEeCCCcEEEEecCCCCCCC
Q 019349 235 SMQFQDILVATSSSGSLHVFSPGFAINQR 263 (342)
Q Consensus 235 d~~~~~~l~~~s~dg~i~vwd~~~~~~~~ 263 (342)
.-. ++++||+|||++||.-.+-+.++
T Consensus 238 ~lp---iiisgsEDGTvriWhs~Ty~lE~ 263 (794)
T KOG0276|consen 238 ELP---IIISGSEDGTVRIWNSKTYKLEK 263 (794)
T ss_pred CCc---EEEEecCCccEEEecCcceehhh
Confidence 998 99999999999999987765443
No 29
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.97 E-value=2e-27 Score=195.42 Aligned_cols=243 Identities=8% Similarity=0.028 Sum_probs=191.3
Q ss_pred EEEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEEEEEecCC-ceEEEEEcCCeEEEEE---CCeE
Q 019349 40 LCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLT-SILAVRLNKKRLVIVL---REKT 115 (342)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~~~~~~-~v~~i~~~~~~~~~~~---d~~i 115 (342)
.+...|.+.+..+.|..+++.++..+. |+++.|||.-+...+..++.+. -|...+++|...+++. |+..
T Consensus 49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSq-------DGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~C 121 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDWSTDSRRIVSASQ-------DGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKC 121 (343)
T ss_pred EEecccccceeeeEecCCcCeEEeecc-------CCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCcee
Confidence 345556678888888888888877764 9999999999888888888876 6899999998877766 8899
Q ss_pred EEEECCCC------ceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECC
Q 019349 116 YIYDANTL------AILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSS 189 (342)
Q Consensus 116 ~i~d~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~ 189 (342)
.||++.+. +..+.+..|.. .+.+..+-+|+ .|++++ .|.+.-+||+++++.+..|.+|.+.|.+++++|
T Consensus 122 siy~ls~~d~~g~~~v~r~l~gHtg--ylScC~f~dD~-~ilT~S--GD~TCalWDie~g~~~~~f~GH~gDV~slsl~p 196 (343)
T KOG0286|consen 122 SIYPLSTRDAEGNVRVSRELAGHTG--YLSCCRFLDDN-HILTGS--GDMTCALWDIETGQQTQVFHGHTGDVMSLSLSP 196 (343)
T ss_pred EEEecccccccccceeeeeecCccc--eeEEEEEcCCC-ceEecC--CCceEEEEEcccceEEEEecCCcccEEEEecCC
Confidence 99999754 33445555544 34344443444 555655 489999999999999999999999999999999
Q ss_pred -CCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCc
Q 019349 190 -NGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRT 268 (342)
Q Consensus 190 -dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~ 268 (342)
+++.+++|+.|+.. +|||++.+.....|..+ ...|++++|.|+|. -+++||+|++.++||++...+.....
T Consensus 197 ~~~ntFvSg~cD~~a-klWD~R~~~c~qtF~gh--esDINsv~ffP~G~---afatGSDD~tcRlyDlRaD~~~a~ys-- 268 (343)
T KOG0286|consen 197 SDGNTFVSGGCDKSA-KLWDVRSGQCVQTFEGH--ESDINSVRFFPSGD---AFATGSDDATCRLYDLRADQELAVYS-- 268 (343)
T ss_pred CCCCeEEecccccce-eeeeccCcceeEeeccc--ccccceEEEccCCC---eeeecCCCceeEEEeecCCcEEeeec--
Confidence 99999999999975 89999999999999643 56699999999998 89999999999999999876643211
Q ss_pred cccccccccccccccccccccceeeeccCCCccccEEEEEEeCCcEEEEEE
Q 019349 269 SSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIF 319 (342)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~~ 319 (342)
+ +.....++.++|...+..|++|..|..+++|+.
T Consensus 269 --------~---------~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDt 302 (343)
T KOG0286|consen 269 --------H---------DSIICGITSVAFSKSGRLLFAGYDDFTCNVWDT 302 (343)
T ss_pred --------c---------CcccCCceeEEEcccccEEEeeecCCceeEeec
Confidence 1 111111233444555588999999999999974
No 30
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=3.3e-28 Score=221.68 Aligned_cols=281 Identities=14% Similarity=0.137 Sum_probs=208.5
Q ss_pred CCCeEEEEE-cCCCCEEEEEcCCc-EEEEeCCCCcE-EEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECC
Q 019349 7 SYPVFFVSF-NQDNSGFALSTKDG-FKIFDSSTGRL-CYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTT 83 (342)
Q Consensus 7 ~~~V~~l~f-s~d~~~la~g~~~g-~~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~ 83 (342)
.++|..++| .|+.++||++++.+ +|+|++.+... ++..|...+..+....++.+++.++ .|+++++|.+.
T Consensus 323 ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~s-------KD~svilWr~~ 395 (775)
T KOG0319|consen 323 NDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGS-------KDKSVILWRLN 395 (775)
T ss_pred chhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEec-------CCceEEEEEec
Confidence 457888877 47888999998876 79999877643 3444444444444223333444443 69999999874
Q ss_pred CCcE----EEEE-ecCCceEEEEEcCC---eEEEEE-CCeEEEEECCCCce---eeEE----eCCCCCceEEEEeeCCCc
Q 019349 84 TGTA----LREL-NFLTSILAVRLNKK---RLVIVL-REKTYIYDANTLAI---LDTI----DTVPNLKGLCAFSPSLNA 147 (342)
Q Consensus 84 ~~~~----~~~~-~~~~~v~~i~~~~~---~~~~~~-d~~i~i~d~~~~~~---~~~~----~~~~~~~~~~~~~~~~~~ 147 (342)
++.. +... .+.+.|.+++++.. .++.++ |.++++|++...+. ...+ ....+...+.+++.+|+.
T Consensus 396 ~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~nd 475 (775)
T KOG0319|consen 396 NNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPND 475 (775)
T ss_pred CCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCC
Confidence 4432 2222 24568888888653 444444 88999999976111 1111 222344567777888888
Q ss_pred cEEEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeE
Q 019349 148 CFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTI 227 (342)
Q Consensus 148 ~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v 227 (342)
.++|+++ .|.+.+||++.......++.+|+..|.|+.|+|..+.|||+|.|++ ||||.+.+..++++|..+ .+.|
T Consensus 476 kLiAT~S--qDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~T-vKIW~is~fSClkT~eGH--~~aV 550 (775)
T KOG0319|consen 476 KLIATGS--QDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKT-VKIWSISTFSCLKTFEGH--TSAV 550 (775)
T ss_pred ceEEecc--cccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCce-EEEEEeccceeeeeecCc--ccee
Confidence 8999988 7999999999999999999999999999999999999999999998 599999999999999643 5679
Q ss_pred EEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEEEE
Q 019349 228 FSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSV 307 (342)
Q Consensus 228 ~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 307 (342)
..+.|-.+++ .|++++.||-|++|++++....++ .+.|...++++...+..+.+++
T Consensus 551 lra~F~~~~~---qliS~~adGliKlWnikt~eC~~t---------------------lD~H~DrvWaL~~~~~~~~~~t 606 (775)
T KOG0319|consen 551 LRASFIRNGK---QLISAGADGLIKLWNIKTNECEMT---------------------LDAHNDRVWALSVSPLLDMFVT 606 (775)
T ss_pred EeeeeeeCCc---EEEeccCCCcEEEEeccchhhhhh---------------------hhhccceeEEEeecCccceeEe
Confidence 9999999999 999999999999999998875442 2333333444444677789999
Q ss_pred EEeCCcEEEEEEecCC
Q 019349 308 ITYNGYFVEYIFSINN 323 (342)
Q Consensus 308 ~~~dg~v~~~~~~~~~ 323 (342)
|+.||.+..|.=.+++
T Consensus 607 gg~Dg~i~~wkD~Te~ 622 (775)
T KOG0319|consen 607 GGGDGRIIFWKDVTEE 622 (775)
T ss_pred cCCCeEEEEeecCcHH
Confidence 9999999999754443
No 31
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.96 E-value=2.1e-27 Score=193.11 Aligned_cols=294 Identities=14% Similarity=0.111 Sum_probs=219.6
Q ss_pred CCCCCCCeEEEEEcCCCCEEEEEcCCcE-EEEeCCCCcEE--EEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEE
Q 019349 3 NQSSSYPVFFVSFNQDNSGFALSTKDGF-KIFDSSTGRLC--YERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCL 79 (342)
Q Consensus 3 ~~~~~~~V~~l~fs~d~~~la~g~~~g~-~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~i 79 (342)
.+.|+.|++.+.||.+|.+|.+++.|.. .||-..+|+.+ |..|.+.+-++++..++..++..++ |+++++
T Consensus 6 l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSA-------D~t~kL 78 (327)
T KOG0643|consen 6 LQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSA-------DQTAKL 78 (327)
T ss_pred cccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccc-------cceeEE
Confidence 4679999999999999999998888775 99988788776 5556677888888888888876654 999999
Q ss_pred EECCCCcEEEEEecCCceEEEEEcCCeE--EEEEC------CeEEEEECCC-------CceeeEEeCCCCCceEEEEeeC
Q 019349 80 FNTTTGTALRELNFLTSILAVRLNKKRL--VIVLR------EKTYIYDANT-------LAILDTIDTVPNLKGLCAFSPS 144 (342)
Q Consensus 80 wd~~~~~~~~~~~~~~~v~~i~~~~~~~--~~~~d------~~i~i~d~~~-------~~~~~~~~~~~~~~~~~~~~~~ 144 (342)
||.++|+++..++.+.+|+.+.|+.+.. ++++| +.|.++|++. ..++..+.++. ..+...-+.
T Consensus 79 WDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~--skit~a~Wg 156 (327)
T KOG0643|consen 79 WDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPD--SKITSALWG 156 (327)
T ss_pred EEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCc--cceeeeeec
Confidence 9999999999999999999999987643 33333 4789999973 34466666554 345555667
Q ss_pred CCccEEEEeCCCCccEEEEEEccCCc-eeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcC
Q 019349 145 LNACFLAVPASTTKGSVLVYNVMELH-SHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTY 223 (342)
Q Consensus 145 ~~~~~l~~~~~~~~g~i~iwd~~~~~-~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~ 223 (342)
|-+.+|+++. .+|.|.+||+++++ .+...+.|...|+.|+++||..+++|+|.|.+. ++||+.+-+.++++..
T Consensus 157 ~l~~~ii~Gh--e~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dtta-kl~D~~tl~v~Kty~t--- 230 (327)
T KOG0643|consen 157 PLGETIIAGH--EDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTA-KLVDVRTLEVLKTYTT--- 230 (327)
T ss_pred ccCCEEEEec--CCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccc-eeeeccceeeEEEeee---
Confidence 7777888877 69999999999985 456667899999999999999999999999885 8999999999998853
Q ss_pred ceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccc-cccccccccceeeeccCCCccc
Q 019349 224 PSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESV-NEVLDPADHHVLRNAFPAGVKR 302 (342)
Q Consensus 224 ~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 302 (342)
..+|++.+++|-.. +++.|+.-.. -|+.+... +..++-+.+.-..+ .++-...+|.-..+.+++.|++
T Consensus 231 e~PvN~aaisP~~d---~VilgGGqeA---~dVTTT~~-----r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdG 299 (327)
T KOG0643|consen 231 ERPVNTAAISPLLD---HVILGGGQEA---MDVTTTST-----RAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDG 299 (327)
T ss_pred cccccceecccccc---eEEecCCcee---eeeeeecc-----cccchhhhHHHHHHHHHhccccccccCcceeEECCCC
Confidence 45699999999877 5665553322 12222111 01111111111111 1222233444455678888888
Q ss_pred cEEEEEEeCCcEEEEEEecC
Q 019349 303 ASVSVITYNGYFVEYIFSIN 322 (342)
Q Consensus 303 ~~l~~~~~dg~v~~~~~~~~ 322 (342)
....+|++||.|++..++..
T Consensus 300 ksYsSGGEDG~VR~h~Fd~~ 319 (327)
T KOG0643|consen 300 KSYSSGGEDGYVRLHHFDSN 319 (327)
T ss_pred cccccCCCCceEEEEEeccc
Confidence 99999999999999988753
No 32
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.96 E-value=1.6e-29 Score=212.25 Aligned_cols=280 Identities=13% Similarity=0.154 Sum_probs=203.3
Q ss_pred CCCCeEEEEEcCCCCEEEEEcCC-cEEEEeCCCCcEEEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCC
Q 019349 6 SSYPVFFVSFNQDNSGFALSTKD-GFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTT 84 (342)
Q Consensus 6 ~~~~V~~l~fs~d~~~la~g~~~-g~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~ 84 (342)
....|+|+.+.. ..+++|..| +++|||.++...++.+..+.-.+++..++.. + +++| ++|.+|++||..+
T Consensus 196 ~skgVYClQYDD--~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~r-v-iisG-----SSDsTvrvWDv~t 266 (499)
T KOG0281|consen 196 NSKGVYCLQYDD--EKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDER-V-IVSG-----SSDSTVRVWDVNT 266 (499)
T ss_pred cCCceEEEEecc--hhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccce-E-EEec-----CCCceEEEEeccC
Confidence 456799999863 347888765 5799998887665544443333444445544 3 3444 3699999999999
Q ss_pred CcEEEEEec-CCceEEEEEcCCeEEEEE-CCeEEEEECCCCce---eeEEeCCCCCceEEEEeeCCCccEEEEeCCCCcc
Q 019349 85 GTALRELNF-LTSILAVRLNKKRLVIVL-REKTYIYDANTLAI---LDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKG 159 (342)
Q Consensus 85 ~~~~~~~~~-~~~v~~i~~~~~~~~~~~-d~~i~i~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g 159 (342)
|+++.++-+ ...|..+.|+...++.++ |.+|.+||+....- .+.+..|... +..+.++ ..++++++ .|.
T Consensus 267 ge~l~tlihHceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAa--VNvVdfd--~kyIVsAS--gDR 340 (499)
T KOG0281|consen 267 GEPLNTLIHHCEAVLHLRFSNGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAA--VNVVDFD--DKYIVSAS--GDR 340 (499)
T ss_pred CchhhHHhhhcceeEEEEEeCCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhh--eeeeccc--cceEEEec--CCc
Confidence 999987654 568999999999888888 88999999977532 2233333333 3334443 34888887 589
Q ss_pred EEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcc
Q 019349 160 SVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQ 239 (342)
Q Consensus 160 ~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~ 239 (342)
+|++|++.+++.++++.+|...|.|+.+ .|+++++||.|.+ ||+||+..|.++..+..+ ..-|.++.|. .+
T Consensus 341 TikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDnt-IRlwdi~~G~cLRvLeGH--EeLvRciRFd--~k-- 411 (499)
T KOG0281|consen 341 TIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNT-IRLWDIECGACLRVLEGH--EELVRCIRFD--NK-- 411 (499)
T ss_pred eEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCce-EEEEeccccHHHHHHhch--HHhhhheeec--Cc--
Confidence 9999999999999999999999999987 5799999999987 699999999998777533 4459999995 44
Q ss_pred cEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEEEEEEeCCcEEEEEE
Q 019349 240 DILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIF 319 (342)
Q Consensus 240 ~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~~ 319 (342)
.+++|.-||+|+|||+.++..++.+ ...-|+-+...|.-.++.+.|. .-+|++.+.|.+|-+|++
T Consensus 412 -rIVSGaYDGkikvWdl~aaldpra~------------~~~~Cl~~lv~hsgRVFrLQFD--~fqIvsssHddtILiWdF 476 (499)
T KOG0281|consen 412 -RIVSGAYDGKIKVWDLQAALDPRAP------------ASTLCLRTLVEHSGRVFRLQFD--EFQIISSSHDDTILIWDF 476 (499)
T ss_pred -eeeeccccceEEEEecccccCCccc------------ccchHHHhhhhccceeEEEeec--ceEEEeccCCCeEEEEEc
Confidence 6999999999999999887665421 1111222222222222233332 258999999999999999
Q ss_pred ecCCC
Q 019349 320 SINNC 324 (342)
Q Consensus 320 ~~~~~ 324 (342)
....+
T Consensus 477 l~~~~ 481 (499)
T KOG0281|consen 477 LNGPP 481 (499)
T ss_pred CCCCc
Confidence 75443
No 33
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.96 E-value=4.8e-29 Score=213.19 Aligned_cols=242 Identities=13% Similarity=0.166 Sum_probs=199.2
Q ss_pred CCCCCCCeEEEEEcCCCCEEEEEcCCcE-EEEeCCCC--cEEEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEE
Q 019349 3 NQSSSYPVFFVSFNQDNSGFALSTKDGF-KIFDSSTG--RLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCL 79 (342)
Q Consensus 3 ~~~~~~~V~~l~fs~d~~~la~g~~~g~-~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~i 79 (342)
.+.|+++|+++.|+++|.++++|+.+|. ++|+.+-. +.....+...|..+++.+..+.++.++. |++|+|
T Consensus 134 lQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~~ahh~eaIRdlafSpnDskF~t~Sd-------Dg~iki 206 (464)
T KOG0284|consen 134 LQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSD-------DGTIKI 206 (464)
T ss_pred hhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHHhhHhhhhhhheeccCCCCceeEEecC-------CCeEEE
Confidence 4679999999999999999999999985 99987543 2223333355666666666677777765 999999
Q ss_pred EECCCCcEEEEEecCC-ceEEEEEcCCeEEEEE---CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCC
Q 019349 80 FNTTTGTALRELNFLT-SILAVRLNKKRLVIVL---REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPAS 155 (342)
Q Consensus 80 wd~~~~~~~~~~~~~~-~v~~i~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 155 (342)
||....+....+..++ .|+++.|+|..-.+++ |+.|++||.++++++.++..|.+ .+.++.+++++.+|++++
T Consensus 207 Wdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKn--tVl~~~f~~n~N~Llt~s- 283 (464)
T KOG0284|consen 207 WDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKN--TVLAVKFNPNGNWLLTGS- 283 (464)
T ss_pred EeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccc--eEEEEEEcCCCCeeEEcc-
Confidence 9998888777776655 8999999997655544 78999999999999988866554 678888888899999998
Q ss_pred CCccEEEEEEccCCceeEEEecccCCeeEEEECC-CCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEec
Q 019349 156 TTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSS-NGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQ 234 (342)
Q Consensus 156 ~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~-dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~ 234 (342)
.|..++++|+++.+.++++++|+..|+++.|+| ...+|.+|+.||.+ ..|.+...+.+.++.. .+...|++|+|+|
T Consensus 284 -kD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsv-vh~~v~~~~p~~~i~~-AHd~~iwsl~~hP 360 (464)
T KOG0284|consen 284 -KDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSV-VHWVVGLEEPLGEIPP-AHDGEIWSLAYHP 360 (464)
T ss_pred -CCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCce-EEEeccccccccCCCc-ccccceeeeeccc
Confidence 689999999999999999999999999999999 56789999999996 5999986666666643 3456799999999
Q ss_pred CCCcccEEEEEeCCCcEEEEecCCCC
Q 019349 235 SMQFQDILVATSSSGSLHVFSPGFAI 260 (342)
Q Consensus 235 d~~~~~~l~~~s~dg~i~vwd~~~~~ 260 (342)
-|. +||+|+.|.++++|.-..+-
T Consensus 361 lGh---il~tgsnd~t~rfw~r~rp~ 383 (464)
T KOG0284|consen 361 LGH---ILATGSNDRTVRFWTRNRPG 383 (464)
T ss_pred cce---eEeecCCCcceeeeccCCCC
Confidence 998 99999999999999865543
No 34
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.1e-25 Score=187.33 Aligned_cols=244 Identities=11% Similarity=0.161 Sum_probs=190.6
Q ss_pred CCCCCeEEEEEcCCCCEEEEEcCC-cEEEEeCCCCcEEEEEeeC--CEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEE
Q 019349 5 SSSYPVFFVSFNQDNSGFALSTKD-GFKIFDSSTGRLCYERAVG--AFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFN 81 (342)
Q Consensus 5 ~~~~~V~~l~fs~d~~~la~g~~~-g~~v~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd 81 (342)
.....|+++.|+++|.+|++++++ .+++||..+++........ ++..+.+.+..+.+...+.. .|.+||..+
T Consensus 12 ~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk-----~d~tIryLs 86 (311)
T KOG1446|consen 12 ETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTK-----EDDTIRYLS 86 (311)
T ss_pred cCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCC-----CCCceEEEE
Confidence 346789999999999999887665 7899999999877665543 67778888888777766653 589999999
Q ss_pred CCCCcEEEEEecC-CceEEEEEcCCe--EEEEE-CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCC
Q 019349 82 TTTGTALRELNFL-TSILAVRLNKKR--LVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTT 157 (342)
Q Consensus 82 ~~~~~~~~~~~~~-~~v~~i~~~~~~--~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 157 (342)
+.+++.++-+..+ ..|.+++.+|.. ++.++ |++|++||++..+++.-+..... .+++ ++|+|.++|++..
T Consensus 87 l~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~--pi~A--fDp~GLifA~~~~-- 160 (311)
T KOG1446|consen 87 LHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR--PIAA--FDPEGLIFALANG-- 160 (311)
T ss_pred eecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCC--ccee--ECCCCcEEEEecC--
Confidence 9999999988754 489999998753 33333 89999999998888777755433 3544 4566778887763
Q ss_pred ccEEEEEEccCC--ceeEEEe---cccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCcee-EEEEE
Q 019349 158 KGSVLVYNVMEL--HSHCEID---AHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPST-IFSLS 231 (342)
Q Consensus 158 ~g~i~iwd~~~~--~~~~~~~---~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~-v~~l~ 231 (342)
.+.|++||++.. .+..++. +-....+.|.|||||++|+.+...+. +.+.|.-+|..+..+........ -.+.+
T Consensus 161 ~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~-~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ 239 (311)
T KOG1446|consen 161 SELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASF-IYLLDAFDGTVKSTFSGYPNAGNLPLSAT 239 (311)
T ss_pred CCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCc-EEEEEccCCcEeeeEeeccCCCCcceeEE
Confidence 458999999865 2455554 33667899999999999999988875 68999999998888865433322 24678
Q ss_pred EecCCCcccEEEEEeCCCcEEEEecCCCCCCC
Q 019349 232 FGQSMQFQDILVATSSSGSLHVFSPGFAINQR 263 (342)
Q Consensus 232 fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~ 263 (342)
|+||++ ++++|+.||+|++|+++++.+..
T Consensus 240 ftPds~---Fvl~gs~dg~i~vw~~~tg~~v~ 268 (311)
T KOG1446|consen 240 FTPDSK---FVLSGSDDGTIHVWNLETGKKVA 268 (311)
T ss_pred ECCCCc---EEEEecCCCcEEEEEcCCCcEee
Confidence 999999 99999999999999998887654
No 35
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.96 E-value=7.4e-28 Score=202.90 Aligned_cols=239 Identities=12% Similarity=0.177 Sum_probs=189.8
Q ss_pred eeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEEEEEe-cCCceEEEEEcCCeEEEE--E-CCeEEEEEC
Q 019349 45 AVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELN-FLTSILAVRLNKKRLVIV--L-REKTYIYDA 120 (342)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~i~~~~~~~~~~--~-d~~i~i~d~ 120 (342)
|.+-+.++++.+...+++..+ .|++++|||+.+|+...++. +-..|..+++++.+.++. + |+.|+.||+
T Consensus 150 HlgWVr~vavdP~n~wf~tgs-------~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDL 222 (460)
T KOG0285|consen 150 HLGWVRSVAVDPGNEWFATGS-------ADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDL 222 (460)
T ss_pred ccceEEEEeeCCCceeEEecC-------CCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEec
Confidence 445667777777666665554 49999999999999999887 556899999988755444 3 789999999
Q ss_pred CCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCC
Q 019349 121 NTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQ 200 (342)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~d 200 (342)
+..+.++.+..| -.++.+++.+|.-..|+++| .|.+++|||+++...+..+.+|..+|..+.+.|-...++|||.|
T Consensus 223 e~nkvIR~YhGH--lS~V~~L~lhPTldvl~t~g--rDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D 298 (460)
T KOG0285|consen 223 EYNKVIRHYHGH--LSGVYCLDLHPTLDVLVTGG--RDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHD 298 (460)
T ss_pred hhhhhHHHhccc--cceeEEEeccccceeEEecC--CcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCC
Confidence 999988887554 45788888888888999998 58999999999999999999999999999999988889999999
Q ss_pred CcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccc
Q 019349 201 GTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESV 280 (342)
Q Consensus 201 g~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (342)
++ ||+||++.|+-...+. ++...|.+++.+|... .+|++|.| .|+-|++..+.-...
T Consensus 299 ~t-vrlWDl~agkt~~tlt--~hkksvral~lhP~e~---~fASas~d-nik~w~~p~g~f~~n---------------- 355 (460)
T KOG0285|consen 299 ST-VRLWDLRAGKTMITLT--HHKKSVRALCLHPKEN---LFASASPD-NIKQWKLPEGEFLQN---------------- 355 (460)
T ss_pred ce-EEEeeeccCceeEeee--cccceeeEEecCCchh---hhhccCCc-cceeccCCccchhhc----------------
Confidence 98 5999999999888774 3355699999999997 78887776 689999876653221
Q ss_pred cccccccccceeeeccCCCccccEEEEEEeCCcEEEEEEecCC
Q 019349 281 NEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSINN 323 (342)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~~~~~~ 323 (342)
..++..+...+... .++++++|+.+|.+..|++....
T Consensus 356 -----lsgh~~iintl~~n-sD~v~~~G~dng~~~fwdwksg~ 392 (460)
T KOG0285|consen 356 -----LSGHNAIINTLSVN-SDGVLVSGGDNGSIMFWDWKSGH 392 (460)
T ss_pred -----cccccceeeeeeec-cCceEEEcCCceEEEEEecCcCc
Confidence 12222222333222 23789999999999999987654
No 36
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.96 E-value=9.6e-28 Score=220.42 Aligned_cols=203 Identities=9% Similarity=0.069 Sum_probs=168.4
Q ss_pred ecCCceEEEEEcCCeEEEEE---CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccC
Q 019349 92 NFLTSILAVRLNKKRLVIVL---REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVME 168 (342)
Q Consensus 92 ~~~~~v~~i~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~ 168 (342)
.+.++|.+..|+|+..++.+ |.++++|.+.+...+-.+..|..|... +.++|.|.++|+++ .|++.++|....
T Consensus 449 GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwd--V~F~P~GyYFatas--~D~tArLWs~d~ 524 (707)
T KOG0263|consen 449 GHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWD--VQFAPRGYYFATAS--HDQTARLWSTDH 524 (707)
T ss_pred cCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceee--EEecCCceEEEecC--CCceeeeeeccc
Confidence 34669999999998655544 789999999999888888877666444 44557789999997 689999999999
Q ss_pred CceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCC
Q 019349 169 LHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSS 248 (342)
Q Consensus 169 ~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~d 248 (342)
.++++.+.+|-+.|.|+.|+|+.+|+||||.|.+ +|+||+.+|..+..|.. |.++|.+|+|||+|+ +||+|++|
T Consensus 525 ~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~t-VRlWDv~~G~~VRiF~G--H~~~V~al~~Sp~Gr---~LaSg~ed 598 (707)
T KOG0263|consen 525 NKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRT-VRLWDVSTGNSVRIFTG--HKGPVTALAFSPCGR---YLASGDED 598 (707)
T ss_pred CCchhhhcccccccceEEECCcccccccCCCCce-EEEEEcCCCcEEEEecC--CCCceEEEEEcCCCc---eEeecccC
Confidence 9999999999999999999999999999999987 59999999999988854 467899999999999 99999999
Q ss_pred CcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEEEEEEeCCcEEEEEEecCCCC
Q 019349 249 GSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSINNCC 325 (342)
Q Consensus 249 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~~~~~~~~ 325 (342)
|.|++||+..++.......+ +-.++.+.|..+++.|++++.|.+|++|++....+.
T Consensus 599 ~~I~iWDl~~~~~v~~l~~H---------------------t~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~ 654 (707)
T KOG0263|consen 599 GLIKIWDLANGSLVKQLKGH---------------------TGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIEL 654 (707)
T ss_pred CcEEEEEcCCCcchhhhhcc---------------------cCceeEEEEecCCCEEEecCCCCeEEEEEchhhccc
Confidence 99999999988765432211 112234455667799999999999999998755443
No 37
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=9.7e-26 Score=183.77 Aligned_cols=282 Identities=10% Similarity=0.147 Sum_probs=203.7
Q ss_pred CCCCCCCeEEEEEcCC-CCEEEEEcCCc-EEEEeCCCCc---EEE---EEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCC
Q 019349 3 NQSSSYPVFFVSFNQD-NSGFALSTKDG-FKIFDSSTGR---LCY---ERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSP 74 (342)
Q Consensus 3 ~~~~~~~V~~l~fs~d-~~~la~g~~~g-~~v~d~~~~~---~~~---~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d 74 (342)
.+.+.+.|..++|+|- |..||+++.+. +|+|+...+. ... ..+...+..+++.+.+++++.++ .|
T Consensus 10 ~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aS-------FD 82 (312)
T KOG0645|consen 10 LSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASAS-------FD 82 (312)
T ss_pred ecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEee-------cc
Confidence 3567789999999998 88899887665 7999987532 221 22556788888888889887765 59
Q ss_pred CeEEEEECCCC--cEEEEEec-CCceEEEEEcCCeEEEEE---CCeEEEEECCCC---ceeeEEeCCCCCceEEEEeeCC
Q 019349 75 RRLCLFNTTTG--TALRELNF-LTSILAVRLNKKRLVIVL---REKTYIYDANTL---AILDTIDTVPNLKGLCAFSPSL 145 (342)
Q Consensus 75 ~~i~iwd~~~~--~~~~~~~~-~~~v~~i~~~~~~~~~~~---d~~i~i~d~~~~---~~~~~~~~~~~~~~~~~~~~~~ 145 (342)
.++.||.-..+ +++..++. .++|++++|++++.++|+ |+.|-||.+... .+...++.|.+....+.. +|
T Consensus 83 ~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~W--HP 160 (312)
T KOG0645|consen 83 ATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIW--HP 160 (312)
T ss_pred ceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEE--cC
Confidence 99999986644 46667764 459999999887666655 889999999743 455566666665555544 55
Q ss_pred CccEEEEeCCCCccEEEEEEccC---CceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCc
Q 019349 146 NACFLAVPASTTKGSVLVYNVME---LHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGT 222 (342)
Q Consensus 146 ~~~~l~~~~~~~~g~i~iwd~~~---~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~ 222 (342)
...+|++++ .|.+|++|+-.. -++++++.+|.+.|.+++|++.|..|+++++|++ ++||-..+. + .+.
T Consensus 161 t~dlL~S~S--YDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~t-v~Iw~~~~~-----~-~~~ 231 (312)
T KOG0645|consen 161 TEDLLFSCS--YDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGT-VSIWRLYTD-----L-SGM 231 (312)
T ss_pred CcceeEEec--cCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcc-eEeeeeccC-----c-chh
Confidence 555999988 589999998662 3578999999999999999999999999999998 589997632 2 123
Q ss_pred CceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccc
Q 019349 223 YPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKR 302 (342)
Q Consensus 223 ~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (342)
+..+++.++|. ++ .||+++.|+.|++|........+....-.+....+..+.-...|.|.. .
T Consensus 232 ~sr~~Y~v~W~-~~----~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~-------------~ 293 (312)
T KOG0645|consen 232 HSRALYDVPWD-NG----VIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKV-------------S 293 (312)
T ss_pred cccceEeeeec-cc----ceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCC-------------C
Confidence 44569999998 55 699999999999998663221111000000001111122234566632 2
Q ss_pred cEEEEEEeCCcEEEEEEe
Q 019349 303 ASVSVITYNGYFVEYIFS 320 (342)
Q Consensus 303 ~~l~~~~~dg~v~~~~~~ 320 (342)
++|++++.||.+++|.+.
T Consensus 294 ~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 294 NRLASGGDDGIVNFWELE 311 (312)
T ss_pred CceeecCCCceEEEEEec
Confidence 789999999999999873
No 38
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.96 E-value=1e-26 Score=216.59 Aligned_cols=242 Identities=16% Similarity=0.172 Sum_probs=187.5
Q ss_pred CCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCc--EEEEE-ecCCceEEEEEcCCeEEEEE---CCeEEEEEC
Q 019349 47 GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGT--ALREL-NFLTSILAVRLNKKRLVIVL---REKTYIYDA 120 (342)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~--~~~~~-~~~~~v~~i~~~~~~~~~~~---d~~i~i~d~ 120 (342)
..+..+.+.++++.++..+ .++.+++|+..+.+ ...++ .+...|.+++|+++..++++ |.+++|||+
T Consensus 160 ~sv~~~~fs~~g~~l~~~~-------~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~ 232 (456)
T KOG0266|consen 160 PSVTCVDFSPDGRALAAAS-------SDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDL 232 (456)
T ss_pred CceEEEEEcCCCCeEEEcc-------CCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeec
Confidence 5566677777777765554 48999999997776 44444 34558999999998755544 789999999
Q ss_pred -CCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeC
Q 019349 121 -NTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASE 199 (342)
Q Consensus 121 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~ 199 (342)
..+..++++..|.. .+.+++++|++..+++++ .|++|+|||+++++++..+++|.++|++++|+++|++|++++.
T Consensus 233 ~~~~~~~~~l~gH~~--~v~~~~f~p~g~~i~Sgs--~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~ 308 (456)
T KOG0266|consen 233 KDDGRNLKTLKGHST--YVTSVAFSPDGNLLVSGS--DDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASY 308 (456)
T ss_pred cCCCeEEEEecCCCC--ceEEEEecCCCCEEEEec--CCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCC
Confidence 55588899987666 457777778887888777 6999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEEcCCCe--eEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCcccccccccc
Q 019349 200 QGTIIRVFLVSEAT--KSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILP 277 (342)
Q Consensus 200 dg~~irlwd~~~~~--~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 277 (342)
||. |++||+.+++ ++..+........++++.|+|++. +|++++.|+++++||+..............
T Consensus 309 d~~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~---~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~------- 377 (456)
T KOG0266|consen 309 DGT-IRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGK---YLLSASLDRTLKLWDLRSGKSVGTYTGHSN------- 377 (456)
T ss_pred Ccc-EEEEECCCCceeeeecccCCCCCCceeEEEECCCCc---EEEEecCCCeEEEEEccCCcceeeecccCC-------
Confidence 997 5899999998 456665443222689999999999 999999999999999998765442111111
Q ss_pred ccccccccccccceeeeccCCCccccEEEEEEeCCcEEEEEEec
Q 019349 278 ESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSI 321 (342)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~~~~ 321 (342)
. ..+..++. ..+.+..+++++.|+.|++|++..
T Consensus 378 ~-~~~~~~~~----------~~~~~~~i~sg~~d~~v~~~~~~s 410 (456)
T KOG0266|consen 378 L-VRCIFSPT----------LSTGGKLIYSGSEDGSVYVWDSSS 410 (456)
T ss_pred c-ceeEeccc----------ccCCCCeEEEEeCCceEEEEeCCc
Confidence 0 01222221 133447899999999999998765
No 39
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=9.6e-27 Score=208.61 Aligned_cols=241 Identities=11% Similarity=0.122 Sum_probs=193.4
Q ss_pred CCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcEEEEEeeCC--EEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEEC
Q 019349 6 SSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAVGA--FSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNT 82 (342)
Q Consensus 6 ~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~ 82 (342)
.+-||++..|-+.-+.+++|++|+ +||||.++++.+...+.++ +..+...+.--+++..+ +|-+|++||.
T Consensus 54 ~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsS-------DDm~iKlW~w 126 (794)
T KOG0276|consen 54 SEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSS-------DDMTIKLWDW 126 (794)
T ss_pred cccchhhheeeeccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecC-------CccEEEEeec
Confidence 456899999999999999999998 6999999998776555444 44555555445555444 5999999999
Q ss_pred CCC-cEEEEEec-CCceEEEEEcCC---eEEEEE-CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCC
Q 019349 83 TTG-TALRELNF-LTSILAVRLNKK---RLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPAST 156 (342)
Q Consensus 83 ~~~-~~~~~~~~-~~~v~~i~~~~~---~~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 156 (342)
+.+ .+.++++. ...|.+++|+|+ .++.++ |++|++|.+.+..+..+++.|......+.+-+.+|..+|++++
T Consensus 127 e~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsga-- 204 (794)
T KOG0276|consen 127 ENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGA-- 204 (794)
T ss_pred cCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecC--
Confidence 765 34455554 348999999875 455555 9999999999999999998877766666676777888999887
Q ss_pred CccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCC
Q 019349 157 TKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSM 236 (342)
Q Consensus 157 ~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~ 236 (342)
.|.+|+|||.++..|++++++|.+.|+++.|+|.-..++|||+||++ |||+..+-++...+.-+ -..++|++-.+.+
T Consensus 205 DD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTv-riWhs~Ty~lE~tLn~g--leRvW~I~~~k~~ 281 (794)
T KOG0276|consen 205 DDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTV-RIWNSKTYKLEKTLNYG--LERVWCIAAHKGD 281 (794)
T ss_pred CCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccE-EEecCcceehhhhhhcC--CceEEEEeecCCC
Confidence 69999999999999999999999999999999999999999999995 99999988777766544 4569999988888
Q ss_pred CcccEEEEEeCCCcEEEEecCCCCCC
Q 019349 237 QFQDILVATSSSGSLHVFSPGFAINQ 262 (342)
Q Consensus 237 ~~~~~l~~~s~dg~i~vwd~~~~~~~ 262 (342)
. .++.|.+.|.|. ..+....+.
T Consensus 282 ~---~i~vG~Deg~i~-v~lgreeP~ 303 (794)
T KOG0276|consen 282 G---KIAVGFDEGSVT-VKLGREEPA 303 (794)
T ss_pred C---eEEEeccCCcEE-EEccCCCCc
Confidence 7 788888877764 455555443
No 40
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.96 E-value=1.2e-27 Score=210.07 Aligned_cols=291 Identities=13% Similarity=0.100 Sum_probs=203.6
Q ss_pred CCCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCC-------cEEEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCe
Q 019349 5 SSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTG-------RLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRR 76 (342)
Q Consensus 5 ~~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~ 76 (342)
.+...|.++++.|.|..|++|+-|. +++||.+.. +.+.--+.+.+..+.+...++-++++++ ...
T Consensus 165 hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg-------~aq 237 (641)
T KOG0772|consen 165 HGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSG-------SAQ 237 (641)
T ss_pred CCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEec-------Ccc
Confidence 4556799999999999999998775 799998654 2222223477788888888888888877 457
Q ss_pred EEEEECCCCcEEEEEec-------------CCceEEEEEcCC---eEEEEE-CCeEEEEECCCCcee-eEEeCC---CCC
Q 019349 77 LCLFNTTTGTALRELNF-------------LTSILAVRLNKK---RLVIVL-REKTYIYDANTLAIL-DTIDTV---PNL 135 (342)
Q Consensus 77 i~iwd~~~~~~~~~~~~-------------~~~v~~i~~~~~---~~~~~~-d~~i~i~d~~~~~~~-~~~~~~---~~~ 135 (342)
.+|+|-...+....... ...+++.+|+|. .++.++ |++++|||+.+.+.. ..+.+. ...
T Consensus 238 akl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~R 317 (641)
T KOG0772|consen 238 AKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKR 317 (641)
T ss_pred eeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcc
Confidence 78888543333322221 225677788775 344455 899999999876433 333322 222
Q ss_pred ceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCc--e-eEEEecccC--CeeEEEECCCCCEEEEEeCCCcEEEEEEcC
Q 019349 136 KGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELH--S-HCEIDAHQA--PLAAIVLSSNGMYIATASEQGTIIRVFLVS 210 (342)
Q Consensus 136 ~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~--~-~~~~~~h~~--~v~~i~~s~dg~~lat~s~dg~~irlwd~~ 210 (342)
..+...++++++..+|++. .||.|++|+..+.. + ...-.+|.. .|+||+||+||++|++-|.|+++ |+||++
T Consensus 318 v~~tsC~~nrdg~~iAagc--~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tL-KvWDLr 394 (641)
T KOG0772|consen 318 VPVTSCAWNRDGKLIAAGC--LDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTL-KVWDLR 394 (641)
T ss_pred cCceeeecCCCcchhhhcc--cCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCce-eeeecc
Confidence 3455667788888888766 69999999975432 2 233458887 99999999999999999999985 999998
Q ss_pred CCee-EEEeccCcCceeEEEEEEecCCCcccEEEEEeC------CCcEEEEecCCCCCCCCCCCcccccccccccccccc
Q 019349 211 EATK-SYSFRRGTYPSTIFSLSFGQSMQFQDILVATSS------SGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEV 283 (342)
Q Consensus 211 ~~~~-~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (342)
+.++ +..+..-...-.-+.++||||.+ +|++|+. .|++.+||-.+-....+...+ -...+.++
T Consensus 395 q~kkpL~~~tgL~t~~~~tdc~FSPd~k---li~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~-------~aSvv~~~ 464 (641)
T KOG0772|consen 395 QFKKPLNVRTGLPTPFPGTDCCFSPDDK---LILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDIS-------TASVVRCL 464 (641)
T ss_pred ccccchhhhcCCCccCCCCccccCCCce---EEEecccccCCCCCceEEEEeccceeeEEEecCC-------CceEEEEe
Confidence 7653 33332111222356789999999 8888865 367999997765543321111 11234678
Q ss_pred ccccccceeeeccCCCccccEEEEEEeCCcEEEEEEecCCCCeeeeE
Q 019349 284 LDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSINNCCESTWT 330 (342)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~~~~~~~~~~~~~ 330 (342)
|+|.- |+|+++++||.+++| +++.++++++|.
T Consensus 465 WhpkL--------------NQi~~gsgdG~~~vy-Ydp~~S~RGak~ 496 (641)
T KOG0772|consen 465 WHPKL--------------NQIFAGSGDGTAHVY-YDPNESIRGAKL 496 (641)
T ss_pred ecchh--------------hheeeecCCCceEEE-ECccccccchhh
Confidence 88854 899999999999999 899998888763
No 41
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.96 E-value=1.4e-26 Score=211.39 Aligned_cols=282 Identities=13% Similarity=0.131 Sum_probs=225.4
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEcCCcEEEEeCCCCcEEEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECC
Q 019349 4 QSSSYPVFFVSFNQDNSGFALSTKDGFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTT 83 (342)
Q Consensus 4 ~~~~~~V~~l~fs~d~~~la~g~~~g~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~ 83 (342)
..|...|++++||.|...+++|..+.+++|+..+.+.+++...+-+-...+.+..+++++.. ..+.+.++|+.
T Consensus 370 ~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~-------k~Gel~vfdla 442 (888)
T KOG0306|consen 370 GGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGT-------KNGELQVFDLA 442 (888)
T ss_pred ccchhheeEEEeecCceeeeecCCCcEEEEEccCcceeEEeccccEEEEEecCCCceEEEec-------cCCceEEEEee
Confidence 46778899999999999999999999999999999999888777666667777766665543 48999999999
Q ss_pred CCcEEEEEe-cCCceEEEEEcCCe--EEEEE-CCeEEEEECCC-----CceeeEEeC-----CCCCceEEEEeeCCCccE
Q 019349 84 TGTALRELN-FLTSILAVRLNKKR--LVIVL-REKTYIYDANT-----LAILDTIDT-----VPNLKGLCAFSPSLNACF 149 (342)
Q Consensus 84 ~~~~~~~~~-~~~~v~~i~~~~~~--~~~~~-d~~i~i~d~~~-----~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ 149 (342)
....+.+++ |.+.|.+++..|++ ++.++ |++|++||+.- +...+.+.. -.-+..+.|++.+||+.+
T Consensus 443 S~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~ 522 (888)
T KOG0306|consen 443 SASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKL 522 (888)
T ss_pred hhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcE
Confidence 888777765 56689999998774 44555 89999999842 111111111 111346889999999999
Q ss_pred EEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEE
Q 019349 150 LAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFS 229 (342)
Q Consensus 150 l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~ 229 (342)
||.+- -|.+|+||-+.+.+...++.+|+-||.||.+|||+++++|||.|.+ +++|-+.-|.+-+.+-.+ ...|.+
T Consensus 523 LaVsL--LdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKn-VKiWGLdFGDCHKS~fAH--dDSvm~ 597 (888)
T KOG0306|consen 523 LAVSL--LDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKN-VKIWGLDFGDCHKSFFAH--DDSVMS 597 (888)
T ss_pred EEEEe--ccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCc-eEEeccccchhhhhhhcc--cCceeE
Confidence 99887 5899999999999999999999999999999999999999999988 599999999988877543 556999
Q ss_pred EEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEEEEEE
Q 019349 230 LSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVIT 309 (342)
Q Consensus 230 l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 309 (342)
+.|-|+.. ++.+++.|+.|+-||-+....... ++.+...+|-.+- .+.+.+++++|
T Consensus 598 V~F~P~~~---~FFt~gKD~kvKqWDg~kFe~iq~-----------L~~H~~ev~cLav----------~~~G~~vvs~s 653 (888)
T KOG0306|consen 598 VQFLPKTH---LFFTCGKDGKVKQWDGEKFEEIQK-----------LDGHHSEVWCLAV----------SPNGSFVVSSS 653 (888)
T ss_pred EEEcccce---eEEEecCcceEEeechhhhhhhee-----------eccchheeeeeEE----------cCCCCeEEecc
Confidence 99999988 899999999999999776655432 2333344554433 56668999999
Q ss_pred eCCcEEEEEEec
Q 019349 310 YNGYFVEYIFSI 321 (342)
Q Consensus 310 ~dg~v~~~~~~~ 321 (342)
.|..+++|..+.
T Consensus 654 hD~sIRlwE~td 665 (888)
T KOG0306|consen 654 HDKSIRLWERTD 665 (888)
T ss_pred CCceeEeeeccC
Confidence 999999998654
No 42
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.96 E-value=2.3e-25 Score=196.24 Aligned_cols=286 Identities=15% Similarity=0.207 Sum_probs=220.6
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcEEEEE----eeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEE
Q 019349 4 QSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYER----AVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLC 78 (342)
Q Consensus 4 ~~~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~ 78 (342)
+.|..+++-..|+|.|-++|+|...| +||||....+.+... -.+++.-+.|.+++..++.+|.|+.. -+.+.
T Consensus 56 tEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrer---fg~~F 132 (603)
T KOG0318|consen 56 TEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRER---FGHVF 132 (603)
T ss_pred ccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccc---eeEEE
Confidence 45778899999999999999998887 799998765433322 23788889999999999999887431 34566
Q ss_pred EEECCCCcEEEEEecCC-ceEEEEEcCCe---EEEEE-CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEe
Q 019349 79 LFNTTTGTALRELNFLT-SILAVRLNKKR---LVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVP 153 (342)
Q Consensus 79 iwd~~~~~~~~~~~~~~-~v~~i~~~~~~---~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 153 (342)
+|| +|..+.++..++ .|.++.|-|.+ ++.++ |+.|.+|+=...+...+++.|.+ -+.++-++||+.++|++
T Consensus 133 ~~D--SG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~Hsk--FV~~VRysPDG~~Fat~ 208 (603)
T KOG0318|consen 133 LWD--SGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSK--FVNCVRYSPDGSRFATA 208 (603)
T ss_pred Eec--CCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeeccccccc--ceeeEEECCCCCeEEEe
Confidence 676 667778887655 78888886654 33344 78999999776666666655544 67788888999999999
Q ss_pred CCCCccEEEEEEccCCceeEEEe---cccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCc-eeEEE
Q 019349 154 ASTTKGSVLVYNVMELHSHCEID---AHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYP-STIFS 229 (342)
Q Consensus 154 ~~~~~g~i~iwd~~~~~~~~~~~---~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~-~~v~~ 229 (342)
| .||+|.+||-.+++.+..+. +|++.|.+++|+||++.++|+|.|.+ +||||+.+.+++.++..+..- .....
T Consensus 209 g--sDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt-~KIWdVs~~slv~t~~~~~~v~dqqvG 285 (603)
T KOG0318|consen 209 G--SDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKT-IKIWDVSTNSLVSTWPMGSTVEDQQVG 285 (603)
T ss_pred c--CCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCce-EEEEEeeccceEEEeecCCchhceEEE
Confidence 9 58999999999999999998 89999999999999999999999987 699999999999998655331 12334
Q ss_pred EEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEEEEEE
Q 019349 230 LSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVIT 309 (342)
Q Consensus 230 l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 309 (342)
+-|- . . .|++-|.+|+|.+++...++.++.. .+|...++++...+++.+|++++
T Consensus 286 ~lWq-k-d---~lItVSl~G~in~ln~~d~~~~~~i---------------------~GHnK~ITaLtv~~d~~~i~Sgs 339 (603)
T KOG0318|consen 286 CLWQ-K-D---HLITVSLSGTINYLNPSDPSVLKVI---------------------SGHNKSITALTVSPDGKTIYSGS 339 (603)
T ss_pred EEEe-C-C---eEEEEEcCcEEEEecccCCChhhee---------------------cccccceeEEEEcCCCCEEEeec
Confidence 4565 3 3 6999999999999999887754421 12222233444456668999999
Q ss_pred eCCcEEEEEEecCCCC
Q 019349 310 YNGYFVEYIFSINNCC 325 (342)
Q Consensus 310 ~dg~v~~~~~~~~~~~ 325 (342)
.||.|..|+....+..
T Consensus 340 yDG~I~~W~~~~g~~~ 355 (603)
T KOG0318|consen 340 YDGHINSWDSGSGTSD 355 (603)
T ss_pred cCceEEEEecCCcccc
Confidence 9999999988765544
No 43
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.95 E-value=7e-28 Score=210.10 Aligned_cols=281 Identities=12% Similarity=0.120 Sum_probs=212.7
Q ss_pred CCCCCCCeEEEEEcC-CCCEEEEEcCCc-EEEEeCCC-CcEEEE--EeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeE
Q 019349 3 NQSSSYPVFFVSFNQ-DNSGFALSTKDG-FKIFDSST-GRLCYE--RAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRL 77 (342)
Q Consensus 3 ~~~~~~~V~~l~fs~-d~~~la~g~~~g-~~v~d~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i 77 (342)
.+.|...|.++.|.| .+.+|++|+.|+ ++|||+-. ++++.. .|..++..+.+...+..++.++ .|+.|
T Consensus 210 ~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~s-------fD~~l 282 (503)
T KOG0282|consen 210 LSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSAS-------FDRFL 282 (503)
T ss_pred ccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeee-------cceee
Confidence 467888999999999 778888888887 59999765 555544 3444555555555555555444 59999
Q ss_pred EEEECCCCcEEEEEecCCceEEEEEcCCe--EEEEE--CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEe
Q 019349 78 CLFNTTTGTALRELNFLTSILAVRLNKKR--LVIVL--REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVP 153 (342)
Q Consensus 78 ~iwd~~~~~~~~~~~~~~~v~~i~~~~~~--~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 153 (342)
++||+++|+++..+.....+.++.++|+. +++++ |++|+-||+++++.++++..+-. .+..+.+-+++..++++
T Consensus 283 KlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg--~i~~i~F~~~g~rFiss 360 (503)
T KOG0282|consen 283 KLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLG--AILDITFVDEGRRFISS 360 (503)
T ss_pred eeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhh--heeeeEEccCCceEeee
Confidence 99999999999999999999999998864 44444 89999999999999888865444 46667777888888888
Q ss_pred CCCCccEEEEEEccCCceeEEEe-cccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCee---EEEeccCcCceeEEE
Q 019349 154 ASTTKGSVLVYNVMELHSHCEID-AHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATK---SYSFRRGTYPSTIFS 229 (342)
Q Consensus 154 ~~~~~g~i~iwd~~~~~~~~~~~-~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~---~~~~~~~~~~~~v~~ 229 (342)
+ .+++++||+.+.+-++..+. .+.....||..+|++.+++.-|.|..+ -+|.+...-. .+.|.++.-.+--..
T Consensus 361 S--Ddks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i-~ifs~~~~~r~nkkK~feGh~vaGys~~ 437 (503)
T KOG0282|consen 361 S--DDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYI-AIFSTVPPFRLNKKKRFEGHSVAGYSCQ 437 (503)
T ss_pred c--cCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceE-EEEecccccccCHhhhhcceeccCceee
Confidence 7 68999999998887665543 234567889999999999999999874 5888754322 233433332333567
Q ss_pred EEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEEEEEE
Q 019349 230 LSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVIT 309 (342)
Q Consensus 230 l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 309 (342)
+.|||||. +|++|+.||.+.+||-++.+.....+ .+-..-+...|+|... ..+++++
T Consensus 438 v~fSpDG~---~l~SGdsdG~v~~wdwkt~kl~~~lk-------ah~~~ci~v~wHP~e~-------------Skvat~~ 494 (503)
T KOG0282|consen 438 VDFSPDGR---TLCSGDSDGKVNFWDWKTTKLVSKLK-------AHDQPCIGVDWHPVEP-------------SKVATCG 494 (503)
T ss_pred EEEcCCCC---eEEeecCCccEEEeechhhhhhhccc-------cCCcceEEEEecCCCc-------------ceeEecc
Confidence 89999999 99999999999999998877654322 2212234567888652 6799999
Q ss_pred eCCcEEEEE
Q 019349 310 YNGYFVEYI 318 (342)
Q Consensus 310 ~dg~v~~~~ 318 (342)
-||.|++|+
T Consensus 495 w~G~Ikiwd 503 (503)
T KOG0282|consen 495 WDGLIKIWD 503 (503)
T ss_pred cCceeEecC
Confidence 999999994
No 44
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.95 E-value=6.5e-25 Score=190.91 Aligned_cols=234 Identities=17% Similarity=0.255 Sum_probs=187.8
Q ss_pred CCCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcEEEEEe--eCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEE
Q 019349 5 SSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERA--VGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFN 81 (342)
Q Consensus 5 ~~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd 81 (342)
.+...+..+.|+|++++|++++.++ +++||+.+++...... ...+..+.+..+...++..+ .++.|++||
T Consensus 49 ~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-------~~~~i~~~~ 121 (289)
T cd00200 49 GHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSS-------RDKTIKVWD 121 (289)
T ss_pred cCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEec-------CCCeEEEEE
Confidence 4567888999999999999888776 6999998865544433 33566666666544444433 378999999
Q ss_pred CCCCcEEEEEe-cCCceEEEEEcCCe-EEE-EE-CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCC
Q 019349 82 TTTGTALRELN-FLTSILAVRLNKKR-LVI-VL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTT 157 (342)
Q Consensus 82 ~~~~~~~~~~~-~~~~v~~i~~~~~~-~~~-~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 157 (342)
+.+++.+..+. +...+.++.++++. +++ +. ++.+++||+++++.+..+..+. ..+.++.+++++..+++++ .
T Consensus 122 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~--~ 197 (289)
T cd00200 122 VETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHT--GEVNSVAFSPDGEKLLSSS--S 197 (289)
T ss_pred CCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCc--cccceEEECCCcCEEEEec--C
Confidence 99888887776 45589999999843 333 33 7899999999888887776443 3566777788887888877 4
Q ss_pred ccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCC
Q 019349 158 KGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQ 237 (342)
Q Consensus 158 ~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~ 237 (342)
+|.|++||+.+++.+..+..|..++.+++|+|++.++++++.||. +++||+.+++.+..+.. +...+.+++|+|++.
T Consensus 198 ~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-i~i~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~ 274 (289)
T cd00200 198 DGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGT-IRVWDLRTGECVQTLSG--HTNSVTSLAWSPDGK 274 (289)
T ss_pred CCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCc-EEEEEcCCceeEEEccc--cCCcEEEEEECCCCC
Confidence 899999999999888888889999999999999999999988998 58999999888888763 345699999999988
Q ss_pred cccEEEEEeCCCcEEEEe
Q 019349 238 FQDILVATSSSGSLHVFS 255 (342)
Q Consensus 238 ~~~~l~~~s~dg~i~vwd 255 (342)
+|++++.||.|++|+
T Consensus 275 ---~l~~~~~d~~i~iw~ 289 (289)
T cd00200 275 ---RLASGSADGTIRIWD 289 (289)
T ss_pred ---EEEEecCCCeEEecC
Confidence 999999999999996
No 45
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.6e-26 Score=196.84 Aligned_cols=283 Identities=14% Similarity=0.136 Sum_probs=209.9
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEcCCcE-EEEeCCCC---cEEEE--EeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeE
Q 019349 4 QSSSYPVFFVSFNQDNSGFALSTKDGF-KIFDSSTG---RLCYE--RAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRL 77 (342)
Q Consensus 4 ~~~~~~V~~l~fs~d~~~la~g~~~g~-~v~d~~~~---~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i 77 (342)
+.+..+|..+.||++|++||+|+.|.. .+|.+... ++..+ .+..++..+.|.++.++++.++. +..+
T Consensus 221 ~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~-------~e~~ 293 (519)
T KOG0293|consen 221 QDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGF-------DEVL 293 (519)
T ss_pred hhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCc-------hHhe
Confidence 467889999999999999999998874 77875433 33333 34567888899999999988875 6779
Q ss_pred EEEECCCCcEEEEEecC--CceEEEEEcCCeEEEEE---CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEE
Q 019349 78 CLFNTTTGTALRELNFL--TSILAVRLNKKRLVIVL---REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAV 152 (342)
Q Consensus 78 ~iwd~~~~~~~~~~~~~--~~v~~i~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 152 (342)
.+||+.+|.....+... ..+.+.+|.||.+-++. |+++..||+.. ..+...+... ...+..++..+|+.++..
T Consensus 294 ~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDg-n~~~~W~gvr-~~~v~dlait~Dgk~vl~ 371 (519)
T KOG0293|consen 294 SLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDG-NILGNWEGVR-DPKVHDLAITYDGKYVLL 371 (519)
T ss_pred eeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCc-chhhcccccc-cceeEEEEEcCCCcEEEE
Confidence 99999999998887655 58899999998654433 88999999864 3343443222 235777888888888888
Q ss_pred eCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEE
Q 019349 153 PASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSF 232 (342)
Q Consensus 153 ~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~f 232 (342)
.+ .|..|++++.++......+.. ..+|+++++|.||+++++.=.+.. +++||++..+.+..+..+....-+..-+|
T Consensus 372 v~--~d~~i~l~~~e~~~dr~lise-~~~its~~iS~d~k~~LvnL~~qe-i~LWDl~e~~lv~kY~Ghkq~~fiIrSCF 447 (519)
T KOG0293|consen 372 VT--VDKKIRLYNREARVDRGLISE-EQPITSFSISKDGKLALVNLQDQE-IHLWDLEENKLVRKYFGHKQGHFIIRSCF 447 (519)
T ss_pred Ee--cccceeeechhhhhhhccccc-cCceeEEEEcCCCcEEEEEcccCe-eEEeecchhhHHHHhhcccccceEEEecc
Confidence 77 689999999887665544443 578999999999999999888877 58999998777777654332223444567
Q ss_pred ec-CCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEEEEEEeC
Q 019349 233 GQ-SMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYN 311 (342)
Q Consensus 233 s~-d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 311 (342)
-- +.. ++|+||+|+.|+||+...++.... +.++....-...|+|... .+++++|.|
T Consensus 448 gg~~~~---fiaSGSED~kvyIWhr~sgkll~~-------LsGHs~~vNcVswNP~~p-------------~m~ASasDD 504 (519)
T KOG0293|consen 448 GGGNDK---FIASGSEDSKVYIWHRISGKLLAV-------LSGHSKTVNCVSWNPADP-------------EMFASASDD 504 (519)
T ss_pred CCCCcc---eEEecCCCceEEEEEccCCceeEe-------ecCCcceeeEEecCCCCH-------------HHhhccCCC
Confidence 53 345 999999999999999888776442 222221112236888652 578999999
Q ss_pred CcEEEEEEecC
Q 019349 312 GYFVEYIFSIN 322 (342)
Q Consensus 312 g~v~~~~~~~~ 322 (342)
|+|+||..++.
T Consensus 505 gtIRIWg~~~~ 515 (519)
T KOG0293|consen 505 GTIRIWGPSDN 515 (519)
T ss_pred CeEEEecCCcc
Confidence 99999987654
No 46
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.95 E-value=2.8e-27 Score=198.86 Aligned_cols=235 Identities=11% Similarity=0.207 Sum_probs=185.7
Q ss_pred CCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcEEEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEE
Q 019349 3 NQSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFN 81 (342)
Q Consensus 3 ~~~~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd 81 (342)
..+|.+.|.|+.|.. +.+++|+.|. ++|||+++++.+...-.+..+++...++.++++.++- |+++.+||
T Consensus 233 L~GHtGSVLCLqyd~--rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~ng~mvtcSk-------DrsiaVWd 303 (499)
T KOG0281|consen 233 LTGHTGSVLCLQYDE--RVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSNGYMVTCSK-------DRSIAVWD 303 (499)
T ss_pred hhcCCCcEEeeeccc--eEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEeCCEEEEecC-------CceeEEEe
Confidence 467899999999975 4788898776 6999999998876655555666777788888888874 99999999
Q ss_pred CCCCcEEEE----EecCCceEEEEEcCCeEEEEE-CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCC
Q 019349 82 TTTGTALRE----LNFLTSILAVRLNKKRLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPAST 156 (342)
Q Consensus 82 ~~~~~~~~~----~~~~~~v~~i~~~~~~~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 156 (342)
+.....+.. ..+...|..+.|+...++.|+ |.+|++|++.+...++++..| ..++.|+... +.++++++
T Consensus 304 m~sps~it~rrVLvGHrAaVNvVdfd~kyIVsASgDRTikvW~~st~efvRtl~gH--kRGIAClQYr--~rlvVSGS-- 377 (499)
T KOG0281|consen 304 MASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWSTSTCEFVRTLNGH--KRGIACLQYR--DRLVVSGS-- 377 (499)
T ss_pred ccCchHHHHHHHHhhhhhheeeeccccceEEEecCCceEEEEeccceeeehhhhcc--cccceehhcc--CeEEEecC--
Confidence 976653321 124568999999988888777 889999999999999998654 4578777765 34555544
Q ss_pred CccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEe-------ccCcCceeEEE
Q 019349 157 TKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSF-------RRGTYPSTIFS 229 (342)
Q Consensus 157 ~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~-------~~~~~~~~v~~ 229 (342)
.|.+|++||+..|.+++.+++|+.-|.||.|+ .+.+++|+-||+ ||+||+..+...... ....+.+.|..
T Consensus 378 SDntIRlwdi~~G~cLRvLeGHEeLvRciRFd--~krIVSGaYDGk-ikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFr 454 (499)
T KOG0281|consen 378 SDNTIRLWDIECGACLRVLEGHEELVRCIRFD--NKRIVSGAYDGK-IKVWDLQAALDPRAPASTLCLRTLVEHSGRVFR 454 (499)
T ss_pred CCceEEEEeccccHHHHHHhchHHhhhheeec--Cceeeeccccce-EEEEecccccCCcccccchHHHhhhhccceeEE
Confidence 68999999999999999999999999999995 578999999998 699999877532111 01123457999
Q ss_pred EEEecCCCcccEEEEEeCCCcEEEEecCCCC
Q 019349 230 LSFGQSMQFQDILVATSSSGSLHVFSPGFAI 260 (342)
Q Consensus 230 l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~ 260 (342)
+.|. .. .+++++.|.+|-|||...+.
T Consensus 455 LQFD--~f---qIvsssHddtILiWdFl~~~ 480 (499)
T KOG0281|consen 455 LQFD--EF---QIISSSHDDTILIWDFLNGP 480 (499)
T ss_pred Eeec--ce---EEEeccCCCeEEEEEcCCCC
Confidence 9885 44 79999999999999986654
No 47
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.95 E-value=6.9e-26 Score=206.60 Aligned_cols=289 Identities=13% Similarity=0.150 Sum_probs=208.4
Q ss_pred eEEE-EEcCCCCEEEEEcCCcEEEEeCCCCcEEEEEeeCCEEEEEEcCC---CCeEEEEcCCCCCCCCCCeEEEEECCCC
Q 019349 10 VFFV-SFNQDNSGFALSTKDGFKIFDSSTGRLCYERAVGAFSIVEMLYS---SSLLAIVGAGEQPSLSPRRLCLFNTTTG 85 (342)
Q Consensus 10 V~~l-~fs~d~~~la~g~~~g~~v~d~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~g~~~~~~d~~i~iwd~~~~ 85 (342)
+..+ .....+..|++..+..+.+||.++.++......-.-.+.+|.+- .+++++++. ...+|+++..+.
T Consensus 284 ~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATN-------s~~lr~y~~~~~ 356 (775)
T KOG0319|consen 284 IDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATN-------SPELRLYTLPTS 356 (775)
T ss_pred hhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeC-------CCceEEEecCCC
Confidence 4444 34445666777778889999988887665443333333444443 378888875 689999999988
Q ss_pred cEEEEEecCCceEEEEEcCCe--EEEEE-CCeEEEEECCCC----ceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCc
Q 019349 86 TALRELNFLTSILAVRLNKKR--LVIVL-REKTYIYDANTL----AILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTK 158 (342)
Q Consensus 86 ~~~~~~~~~~~v~~i~~~~~~--~~~~~-d~~i~i~d~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 158 (342)
.+..-..|...|.++....++ ++.++ |+++++|.+++. -++.....|.+..+.++++.. ...++++++ .|
T Consensus 357 ~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~-~asffvsvS--~D 433 (775)
T KOG0319|consen 357 YCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKL-GASFFVSVS--QD 433 (775)
T ss_pred ceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeeccc-CccEEEEec--CC
Confidence 887444566688998844444 33444 899999988443 234445667776666666433 345677776 69
Q ss_pred cEEEEEEccCCce-----e----EEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEE
Q 019349 159 GSVLVYNVMELHS-----H----CEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFS 229 (342)
Q Consensus 159 g~i~iwd~~~~~~-----~----~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~ 229 (342)
+++++|++...+. + .+..+|...|+|++++|+.+++||||.|.+. +||+++.+..+..+..| ...|.+
T Consensus 434 ~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDkta-KiW~le~~~l~~vLsGH--~RGvw~ 510 (775)
T KOG0319|consen 434 CTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTA-KIWDLEQLRLLGVLSGH--TRGVWC 510 (775)
T ss_pred ceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccce-eeecccCceEEEEeeCC--ccceEE
Confidence 9999999976221 1 1234799999999999999999999999884 99999999999988644 345999
Q ss_pred EEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEEEEEE
Q 019349 230 LSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVIT 309 (342)
Q Consensus 230 l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 309 (342)
+.|+|..+ .+|++|.|.||+||.+.+.+..++ .++|+-.+..+.|-..+.+|++++
T Consensus 511 V~Fs~~dq---~laT~SgD~TvKIW~is~fSClkT---------------------~eGH~~aVlra~F~~~~~qliS~~ 566 (775)
T KOG0319|consen 511 VSFSKNDQ---LLATCSGDKTVKIWSISTFSCLKT---------------------FEGHTSAVLRASFIRNGKQLISAG 566 (775)
T ss_pred EEeccccc---eeEeccCCceEEEEEeccceeeee---------------------ecCccceeEeeeeeeCCcEEEecc
Confidence 99999999 999999999999999988765443 233343444455556678999999
Q ss_pred eCCcEEEEEEecCCCC-------eeeeEEEeee
Q 019349 310 YNGYFVEYIFSINNCC-------ESTWTLDREF 335 (342)
Q Consensus 310 ~dg~v~~~~~~~~~~~-------~~~~~~~~~~ 335 (342)
+||.+++|+++..+|. +.+|.+...+
T Consensus 567 adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~ 599 (775)
T KOG0319|consen 567 ADGLIKLWNIKTNECEMTLDAHNDRVWALSVSP 599 (775)
T ss_pred CCCcEEEEeccchhhhhhhhhccceeEEEeecC
Confidence 9999999999877653 4455554443
No 48
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.95 E-value=1.8e-25 Score=208.43 Aligned_cols=275 Identities=15% Similarity=0.177 Sum_probs=211.5
Q ss_pred CCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcEEEE---EeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEE
Q 019349 6 SSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYE---RAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFN 81 (342)
Q Consensus 6 ~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd 81 (342)
+...+.+..|. ..++.+++.+. +++|+..++..+.. .|.+.+..+++....++++..+. |.++++||
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~-------D~t~rvWd 277 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGST-------DKTERVWD 277 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEec-------CCcEEeEe
Confidence 46678888988 44577777766 58999999977655 45567777777665667666654 99999999
Q ss_pred CCCCcEEEEEe-cCCceEEEEEcCCeEEEEE-CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCcc
Q 019349 82 TTTGTALRELN-FLTSILAVRLNKKRLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKG 159 (342)
Q Consensus 82 ~~~~~~~~~~~-~~~~v~~i~~~~~~~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g 159 (342)
..+|+|+..+. +.+.|.++...+..++.++ |.+|++|++.+++.++.+..|.. .+.++..+ +.++++++ .||
T Consensus 278 ~~sg~C~~~l~gh~stv~~~~~~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~--~V~~v~~~--~~~lvsgs--~d~ 351 (537)
T KOG0274|consen 278 CSTGECTHSLQGHTSSVRCLTIDPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTG--PVNCVQLD--EPLLVSGS--YDG 351 (537)
T ss_pred cCCCcEEEEecCCCceEEEEEccCceEeeccCCceEEEEeccCcceEEEeccccc--cEEEEEec--CCEEEEEe--cCc
Confidence 99999999988 4568888888887777755 99999999999999999876544 45566655 34777766 589
Q ss_pred EEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCC-eeEEEeccCcCceeEEEEEEecCCCc
Q 019349 160 SVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEA-TKSYSFRRGTYPSTIFSLSFGQSMQF 238 (342)
Q Consensus 160 ~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~-~~~~~~~~~~~~~~v~~l~fs~d~~~ 238 (342)
+|++||..+++++.++.+|...|.++.+.+. ..+++||.|++ ||+||+.++ +++..+.. +.+-+.++.+ .++
T Consensus 352 ~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~-IkvWdl~~~~~c~~tl~~--h~~~v~~l~~--~~~- 424 (537)
T KOG0274|consen 352 TVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTT-IKVWDLRTKRKCIHTLQG--HTSLVSSLLL--RDN- 424 (537)
T ss_pred eEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccc-eEeecCCchhhhhhhhcC--Cccccccccc--ccc-
Confidence 9999999999999999999999999988776 89999999987 699999999 88888753 3444655554 355
Q ss_pred ccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEEEEEEeCCcEEEEE
Q 019349 239 QDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYI 318 (342)
Q Consensus 239 ~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~ 318 (342)
+|++++.|++|++||.+.....+..+.+ ....++ .+..+ ...+++.+.||.+++|+
T Consensus 425 --~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~----------~~~~v~----------~l~~~--~~~il~s~~~~~~~l~d 480 (537)
T KOG0274|consen 425 --FLVSSSADGTIKLWDAEEGECLRTLEGR----------HVGGVS----------ALALG--KEEILCSSDDGSVKLWD 480 (537)
T ss_pred --eeEeccccccEEEeecccCceeeeeccC----------CcccEE----------EeecC--cceEEEEecCCeeEEEe
Confidence 8999999999999999888765532211 000011 11111 36799999999999999
Q ss_pred EecCCCCe
Q 019349 319 FSINNCCE 326 (342)
Q Consensus 319 ~~~~~~~~ 326 (342)
+......+
T Consensus 481 l~~~~~~~ 488 (537)
T KOG0274|consen 481 LRSGTLIR 488 (537)
T ss_pred cccCchhh
Confidence 87766544
No 49
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.95 E-value=1.3e-26 Score=186.96 Aligned_cols=281 Identities=12% Similarity=0.106 Sum_probs=208.5
Q ss_pred CCCCCeEEEEEcC---CCCEEEEEcCCcE-EEEeCCCCcEE--EEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEE
Q 019349 5 SSSYPVFFVSFNQ---DNSGFALSTKDGF-KIFDSSTGRLC--YERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLC 78 (342)
Q Consensus 5 ~~~~~V~~l~fs~---d~~~la~g~~~g~-~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~ 78 (342)
.+..||..++||| +|-+|++++.|+- .+-+-++|..+ ++.|.+.+-...+. .+-...+++ +.|=+-+
T Consensus 12 ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~--~na~~aasa-----aadftak 84 (334)
T KOG0278|consen 12 GHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLN--KNATRAASA-----AADFTAK 84 (334)
T ss_pred CCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecC--chhhhhhhh-----cccchhh
Confidence 5778999999985 8888999999985 67777888665 44444444333332 222222222 2578899
Q ss_pred EEECCCCcEEEEEecCCceEEEEEcCCeEEEEE---CCeEEEEECCCCc-eeeEEeCCCCCceEEEEeeCCCccEEEEeC
Q 019349 79 LFNTTTGTALRELNFLTSILAVRLNKKRLVIVL---REKTYIYDANTLA-ILDTIDTVPNLKGLCAFSPSLNACFLAVPA 154 (342)
Q Consensus 79 iwd~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~---d~~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 154 (342)
+||.-+|..+.++++..-|++++|+.+...+.+ +.-++|||++..+ ...++..+.....-+-++. .+. .+.++.
T Consensus 85 vw~a~tgdelhsf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~-eD~-~iLSSa 162 (334)
T KOG0278|consen 85 VWDAVTGDELHSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCH-EDK-CILSSA 162 (334)
T ss_pred hhhhhhhhhhhhhhhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEec-cCc-eEEeec
Confidence 999999999999999999999999988655544 5578999998764 3455555554433333443 344 444444
Q ss_pred CCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEec
Q 019349 155 STTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQ 234 (342)
Q Consensus 155 ~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~ 234 (342)
.|++|++||.++++.++++.- ..+|+++.+++||++|.++... -|++||..+-.+++.+. -+++|.+.+++|
T Consensus 163 --dd~tVRLWD~rTgt~v~sL~~-~s~VtSlEvs~dG~ilTia~gs--sV~Fwdaksf~~lKs~k---~P~nV~SASL~P 234 (334)
T KOG0278|consen 163 --DDKTVRLWDHRTGTEVQSLEF-NSPVTSLEVSQDGRILTIAYGS--SVKFWDAKSFGLLKSYK---MPCNVESASLHP 234 (334)
T ss_pred --cCCceEEEEeccCcEEEEEec-CCCCcceeeccCCCEEEEecCc--eeEEeccccccceeecc---CccccccccccC
Confidence 689999999999999988864 6789999999999998887543 36799999988888774 367899999999
Q ss_pred CCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEEEEEEeCCcE
Q 019349 235 SMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYF 314 (342)
Q Consensus 235 d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v 314 (342)
+.. ++++|++|..++.||..++.+... +..++ +-.+..+.|.|++...++||.||+|
T Consensus 235 ~k~---~fVaGged~~~~kfDy~TgeEi~~------~nkgh--------------~gpVhcVrFSPdGE~yAsGSEDGTi 291 (334)
T KOG0278|consen 235 KKE---FFVAGGEDFKVYKFDYNTGEEIGS------YNKGH--------------FGPVHCVRFSPDGELYASGSEDGTI 291 (334)
T ss_pred CCc---eEEecCcceEEEEEeccCCceeee------cccCC--------------CCceEEEEECCCCceeeccCCCceE
Confidence 998 999999999999999999887442 11111 1222344566777899999999999
Q ss_pred EEEEEecCCCC
Q 019349 315 VEYIFSINNCC 325 (342)
Q Consensus 315 ~~~~~~~~~~~ 325 (342)
++|+..+.+.-
T Consensus 292 rlWQt~~~~~~ 302 (334)
T KOG0278|consen 292 RLWQTTPGKTY 302 (334)
T ss_pred EEEEecCCCch
Confidence 99999887643
No 50
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=5.1e-25 Score=204.43 Aligned_cols=241 Identities=15% Similarity=0.153 Sum_probs=187.5
Q ss_pred CCCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcEEEEEeeCC--EEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEE
Q 019349 5 SSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAVGA--FSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFN 81 (342)
Q Consensus 5 ~~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd 81 (342)
.|++||+.++|+|++.++++|++|. ++||+..+.+.++++-.+- +..+.+.+.--.++.++ +|.+|+|||
T Consensus 49 eHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSAS-------DDQTIrIWN 121 (1202)
T KOG0292|consen 49 EHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSAS-------DDQTIRIWN 121 (1202)
T ss_pred ccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEcc-------CCCeEEEEe
Confidence 5899999999999999999999987 6999999999888765443 33444444444444443 599999999
Q ss_pred CCCCcEEEEEecC-CceEEEEEcCCe--EEEEE-CCeEEEEECCCCce---------------------------eeEEe
Q 019349 82 TTTGTALRELNFL-TSILAVRLNKKR--LVIVL-REKTYIYDANTLAI---------------------------LDTID 130 (342)
Q Consensus 82 ~~~~~~~~~~~~~-~~v~~i~~~~~~--~~~~~-d~~i~i~d~~~~~~---------------------------~~~~~ 130 (342)
..+++++..++.+ ..|.+..|+|.. ++.++ |.+|++||+...+. +-..-
T Consensus 122 wqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~V 201 (1202)
T KOG0292|consen 122 WQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHV 201 (1202)
T ss_pred ccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeee
Confidence 9999999998754 589999999843 33344 99999999963211 00111
Q ss_pred CCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCc--eeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEE
Q 019349 131 TVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELH--SHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFL 208 (342)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~--~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd 208 (342)
...+..++...+++|....+++++ .|..|++|.+...+ .+.+..+|.+.|+++-|+|.-+++++.|+|++ |||||
T Consensus 202 LEGHDRGVNwaAfhpTlpliVSG~--DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDks-irVwD 278 (1202)
T KOG0292|consen 202 LEGHDRGVNWAAFHPTLPLIVSGA--DDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKS-IRVWD 278 (1202)
T ss_pred ecccccccceEEecCCcceEEecC--CcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCcc-EEEEe
Confidence 123345667777888777887776 69999999987665 45677899999999999999999999999997 69999
Q ss_pred cCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCC
Q 019349 209 VSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAIN 261 (342)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~ 261 (342)
+...+.+.+|++. ....+.++-+|..+ |.+++.|+-+-||.++...+
T Consensus 279 m~kRt~v~tfrre--ndRFW~laahP~lN----LfAAgHDsGm~VFkleRErp 325 (1202)
T KOG0292|consen 279 MTKRTSVQTFRRE--NDRFWILAAHPELN----LFAAGHDSGMIVFKLERERP 325 (1202)
T ss_pred cccccceeeeecc--CCeEEEEEecCCcc----eeeeecCCceEEEEEcccCc
Confidence 9999999999765 45688999999998 55667777888998876543
No 51
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1.8e-25 Score=207.44 Aligned_cols=244 Identities=14% Similarity=0.188 Sum_probs=192.0
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcEE--EEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEE
Q 019349 4 QSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLC--YERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLF 80 (342)
Q Consensus 4 ~~~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iw 80 (342)
++....|..++|+|..-.+.++--.| +++||..=+.++ |..|.+++..+.+.+...++ ++|| +|-+|++|
T Consensus 6 EskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplF--VSGG-----DDykIkVW 78 (1202)
T KOG0292|consen 6 ESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLF--VSGG-----DDYKIKVW 78 (1202)
T ss_pred hcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeE--EecC-----CccEEEEE
Confidence 34567899999999999999998777 599998777665 55677888877776554443 3333 58999999
Q ss_pred ECCCCcEEEEEec-CCceEEEEEcCCeEEEEE---CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCC
Q 019349 81 NTTTGTALRELNF-LTSILAVRLNKKRLVIVL---REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPAST 156 (342)
Q Consensus 81 d~~~~~~~~~~~~-~~~v~~i~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 156 (342)
+.++.+++.++.. -..|+.+.|++....+.+ |.+|+|||..+.+++..+..|.+ .+.|..++|....+++++
T Consensus 79 nYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnH--YVMcAqFhptEDlIVSaS-- 154 (1202)
T KOG0292|consen 79 NYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNH--YVMCAQFHPTEDLIVSAS-- 154 (1202)
T ss_pred ecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCce--EEEeeccCCccceEEEec--
Confidence 9999999988754 458999999999866654 66999999999999999987766 456666777666888887
Q ss_pred CccEEEEEEccCCc-----------------------------eeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEE
Q 019349 157 TKGSVLVYNVMELH-----------------------------SHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVF 207 (342)
Q Consensus 157 ~~g~i~iwd~~~~~-----------------------------~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlw 207 (342)
-|.+|+|||+...+ ..+.+++|...|+-++|+|.-.++++|++|.. ||+|
T Consensus 155 LDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRq-VKlW 233 (1202)
T KOG0292|consen 155 LDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQ-VKLW 233 (1202)
T ss_pred ccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcce-eeEE
Confidence 68999999973110 11356799999999999999999999999975 6999
Q ss_pred EcCCCee--EEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCC
Q 019349 208 LVSEATK--SYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRR 264 (342)
Q Consensus 208 d~~~~~~--~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~ 264 (342)
.+..-+. +.+.+. |..+|.++-|+|... ++++.|+|++|+|||+........
T Consensus 234 rmnetKaWEvDtcrg--H~nnVssvlfhp~q~---lIlSnsEDksirVwDm~kRt~v~t 287 (1202)
T KOG0292|consen 234 RMNETKAWEVDTCRG--HYNNVSSVLFHPHQD---LILSNSEDKSIRVWDMTKRTSVQT 287 (1202)
T ss_pred Eeccccceeehhhhc--ccCCcceEEecCccc---eeEecCCCccEEEEecccccceee
Confidence 9865432 233332 345699999999887 999999999999999987765543
No 52
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.95 E-value=9.6e-27 Score=194.10 Aligned_cols=254 Identities=15% Similarity=0.180 Sum_probs=198.2
Q ss_pred CCCCCeEEEEEcCCCCEEEEEcCCcE-EEEeCCCCcEEEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECC
Q 019349 5 SSSYPVFFVSFNQDNSGFALSTKDGF-KIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTT 83 (342)
Q Consensus 5 ~~~~~V~~l~fs~d~~~la~g~~~g~-~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~ 83 (342)
+..+-+.|..|||||++|++|+-||+ .|||..+|++........ .|+
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQA------------------------qd~-------- 258 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQA------------------------QDN-------- 258 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhh------------------------hcc--------
Confidence 45567889999999999999999997 999999887643322100 011
Q ss_pred CCcEEEEEecCCceEEEEEcCCeEEEEE---CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccE
Q 019349 84 TGTALRELNFLTSILAVRLNKKRLVIVL---REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGS 160 (342)
Q Consensus 84 ~~~~~~~~~~~~~v~~i~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~ 160 (342)
.+-...+|.++.|+++.-++++ ||+|++|.+.++++++.++. .+..++++++++.|+..+.+++ .|.+
T Consensus 259 ------fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdr-AHtkGvt~l~FSrD~SqiLS~s--fD~t 329 (508)
T KOG0275|consen 259 ------FMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDR-AHTKGVTCLSFSRDNSQILSAS--FDQT 329 (508)
T ss_pred ------eeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhh-hhccCeeEEEEccCcchhhccc--ccce
Confidence 0112357888899888777665 88999999999999988863 3456899999999999998888 5899
Q ss_pred EEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCccc
Q 019349 161 VLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQD 240 (342)
Q Consensus 161 i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~ 240 (342)
++|.-+.+|+++..+.+|.+-|+...|++||+.++++|.||+ +|+|+.++++++.+|+......+|+++-.-|.+. +
T Consensus 330 vRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgt-vkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnp--e 406 (508)
T KOG0275|consen 330 VRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGT-VKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNP--E 406 (508)
T ss_pred EEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCcc-EEEecCcchhhhhhccCCCCcccceeEEEcCCCC--c
Confidence 999999999999999999999999999999999999999998 5999999999999998766666788888888776 4
Q ss_pred EEEEEeCCCcEEEEecCCCCCCCCCCCccccccc-c-ccccccccccccccceeeeccCCCccccEEEEEEeCCcEEEEE
Q 019349 241 ILVATSSSGSLHVFSPGFAINQRRGGRTSSILGS-I-LPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYI 318 (342)
Q Consensus 241 ~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~ 318 (342)
.++++...++|+|-++..... ++ +.++ . -++-+.+.- .|++..+.++++|+.+|.|.
T Consensus 407 h~iVCNrsntv~imn~qGQvV-rs------fsSGkREgGdFi~~~l--------------SpkGewiYcigED~vlYCF~ 465 (508)
T KOG0275|consen 407 HFIVCNRSNTVYIMNMQGQVV-RS------FSSGKREGGDFINAIL--------------SPKGEWIYCIGEDGVLYCFS 465 (508)
T ss_pred eEEEEcCCCeEEEEeccceEE-ee------eccCCccCCceEEEEe--------------cCCCcEEEEEccCcEEEEEE
Confidence 899999999999999875432 11 0000 0 001112222 45568999999999999998
Q ss_pred EecCC
Q 019349 319 FSINN 323 (342)
Q Consensus 319 ~~~~~ 323 (342)
.-..+
T Consensus 466 ~~sG~ 470 (508)
T KOG0275|consen 466 VLSGK 470 (508)
T ss_pred eecCc
Confidence 76543
No 53
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.4e-25 Score=178.19 Aligned_cols=237 Identities=15% Similarity=0.123 Sum_probs=185.5
Q ss_pred eeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEEEEEecCC-ceEEEEEcCCeEEEEE---CCeEEEEEC
Q 019349 45 AVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLT-SILAVRLNKKRLVIVL---REKTYIYDA 120 (342)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~~~~~~-~v~~i~~~~~~~~~~~---d~~i~i~d~ 120 (342)
+.+.+..+.+.-++++.+.+|. |++|++||...|.++.++..++ +|.+++.+.+.--+++ |..+.+||+
T Consensus 16 ~qgaV~avryN~dGnY~ltcGs-------drtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV 88 (307)
T KOG0316|consen 16 AQGAVRAVRYNVDGNYCLTCGS-------DRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDV 88 (307)
T ss_pred cccceEEEEEccCCCEEEEcCC-------CceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEc
Confidence 4477788888888899888875 9999999999999999997655 8999988766544444 789999999
Q ss_pred CCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccC--CceeEEEecccCCeeEEEECCCCCEEEEEe
Q 019349 121 NTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVME--LHSHCEIDAHQAPLAAIVLSSNGMYIATAS 198 (342)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~--~~~~~~~~~h~~~v~~i~~s~dg~~lat~s 198 (342)
++++.++.+..|.. .+.++.++.+...+++++ -|.++++||-++ .++++.+......|.+|.++ +..|++||
T Consensus 89 ~TGkv~Rr~rgH~a--qVNtV~fNeesSVv~Sgs--fD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS 162 (307)
T KOG0316|consen 89 NTGKVDRRFRGHLA--QVNTVRFNEESSVVASGS--FDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGS 162 (307)
T ss_pred ccCeeeeecccccc--eeeEEEecCcceEEEecc--ccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeec
Confidence 99999999988766 455667777777777776 689999999865 46888888888999999985 57899999
Q ss_pred CCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccc
Q 019349 199 EQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPE 278 (342)
Q Consensus 199 ~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 278 (342)
.||+ +|.||++.|+...... ..+|++++|++|++ .+++++.|+++++-|-++++..+. +.+.
T Consensus 163 ~DGt-vRtydiR~G~l~sDy~----g~pit~vs~s~d~n---c~La~~l~stlrLlDk~tGklL~s----------YkGh 224 (307)
T KOG0316|consen 163 VDGT-VRTYDIRKGTLSSDYF----GHPITSVSFSKDGN---CSLASSLDSTLRLLDKETGKLLKS----------YKGH 224 (307)
T ss_pred cCCc-EEEEEeecceeehhhc----CCcceeEEecCCCC---EEEEeeccceeeecccchhHHHHH----------hccc
Confidence 9999 4999999998765542 34699999999999 899999999999999877765332 2111
Q ss_pred cccccccccccceeeeccCCCccccEEEEEEeCCcEEEEEEec
Q 019349 279 SVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSI 321 (342)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~~~~ 321 (342)
.-. .....+.+......+++|++||.|+.|++-.
T Consensus 225 kn~---------eykldc~l~qsdthV~sgSEDG~Vy~wdLvd 258 (307)
T KOG0316|consen 225 KNM---------EYKLDCCLNQSDTHVFSGSEDGKVYFWDLVD 258 (307)
T ss_pred ccc---------eeeeeeeecccceeEEeccCCceEEEEEecc
Confidence 100 0001112233336899999999999999854
No 54
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.3e-25 Score=207.90 Aligned_cols=240 Identities=13% Similarity=0.164 Sum_probs=182.2
Q ss_pred CCCCCeEEEEEcCCCCEEEEEcCCcE-EEEeCCCC-----------------------------c-EE------------
Q 019349 5 SSSYPVFFVSFNQDNSGFALSTKDGF-KIFDSSTG-----------------------------R-LC------------ 41 (342)
Q Consensus 5 ~~~~~V~~l~fs~d~~~la~g~~~g~-~v~d~~~~-----------------------------~-~~------------ 41 (342)
.+.+.|.++.||+||+|||+|++|++ |||.+... . .+
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 68899999999999999999999996 99975440 0 00
Q ss_pred ------------E------EEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEEEEEecCCceEEEEEc
Q 019349 42 ------------Y------ERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRLN 103 (342)
Q Consensus 42 ------------~------~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~i~~~ 103 (342)
+ ....+.-.++++.++.+.+++.+. .|+|||||++...+|+..+.|...|++|+|+
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSS------MDKTVRLWh~~~~~CL~~F~HndfVTcVaFn 418 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSS------MDKTVRLWHPGRKECLKVFSHNDFVTCVAFN 418 (712)
T ss_pred CccccCCCccccccccchhhhhccchhheecccccCCeeEecc------ccccEEeecCCCcceeeEEecCCeeEEEEec
Confidence 0 000122234555566555555543 5999999999999999999999999999998
Q ss_pred CC--eEEE-EE-CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCceeEEEe---
Q 019349 104 KK--RLVI-VL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEID--- 176 (342)
Q Consensus 104 ~~--~~~~-~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~--- 176 (342)
|. +.++ .+ |++++||++.+.+.+...+.+ .-+.++++.|+|.+.+.+. .+|..++|+....+....+.
T Consensus 419 PvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~---~lITAvcy~PdGk~avIGt--~~G~C~fY~t~~lk~~~~~~I~~ 493 (712)
T KOG0283|consen 419 PVDDRYFISGSLDGKVRLWSISDKKVVDWNDLR---DLITAVCYSPDGKGAVIGT--FNGYCRFYDTEGLKLVSDFHIRL 493 (712)
T ss_pred ccCCCcEeecccccceEEeecCcCeeEeehhhh---hhheeEEeccCCceEEEEE--eccEEEEEEccCCeEEEeeeEee
Confidence 73 3344 33 999999999988777655443 4577888888888888877 58999999998887665443
Q ss_pred ------cccCCeeEEEECCCC-CEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCC
Q 019349 177 ------AHQAPLAAIVLSSNG-MYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSG 249 (342)
Q Consensus 177 ------~h~~~v~~i~~s~dg-~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg 249 (342)
.|. .|+.+.|.|.. ..|+..|.|.+ |||+|.++.+++..|+.......-....|+.||+ +|+++++|.
T Consensus 494 ~~~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSr-IRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk---~IVs~seDs 568 (712)
T KOG0283|consen 494 HNKKKKQGK-RITGLQFFPGDPDEVLVTSNDSR-IRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGK---HIVSASEDS 568 (712)
T ss_pred ccCccccCc-eeeeeEecCCCCCeEEEecCCCc-eEEEeccchhhhhhhcccccCCcceeeeEccCCC---EEEEeecCc
Confidence 233 79999998743 34666677877 6999999888888886544333456789999999 999999999
Q ss_pred cEEEEecCCCC
Q 019349 250 SLHVFSPGFAI 260 (342)
Q Consensus 250 ~i~vwd~~~~~ 260 (342)
.|+||+++...
T Consensus 569 ~VYiW~~~~~~ 579 (712)
T KOG0283|consen 569 WVYIWKNDSFN 579 (712)
T ss_pred eEEEEeCCCCc
Confidence 99999985443
No 55
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.95 E-value=2.9e-25 Score=183.41 Aligned_cols=248 Identities=13% Similarity=0.150 Sum_probs=186.0
Q ss_pred EEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCC-cEEEEEe-cCCceEEEEEcCCeEEE--EE-CCeEE
Q 019349 42 YERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTG-TALRELN-FLTSILAVRLNKKRLVI--VL-REKTY 116 (342)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~-~~~~~~~-~~~~v~~i~~~~~~~~~--~~-d~~i~ 116 (342)
...+.+.+..+.+.+++.+++..| .|+.|.+|+.... +....++ +.+.|..+.+.++.-.+ ++ |.+++
T Consensus 43 l~gh~geI~~~~F~P~gs~~aSgG-------~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~ 115 (338)
T KOG0265|consen 43 LPGHKGEIYTIKFHPDGSCFASGG-------SDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVR 115 (338)
T ss_pred cCCCcceEEEEEECCCCCeEeecC-------CcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEE
Confidence 444567777788888666665544 5999999996432 2333444 34589999998775444 33 88999
Q ss_pred EEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEE
Q 019349 117 IYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIAT 196 (342)
Q Consensus 117 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat 196 (342)
.||.++++.++.++.+... +.++.+..-+..++++++ .||++++||+++.+.+++++. +.+++++.|..++..+.+
T Consensus 116 ~wD~~tG~~~rk~k~h~~~--vNs~~p~rrg~~lv~Sgs-dD~t~kl~D~R~k~~~~t~~~-kyqltAv~f~d~s~qv~s 191 (338)
T KOG0265|consen 116 GWDAETGKRIRKHKGHTSF--VNSLDPSRRGPQLVCSGS-DDGTLKLWDIRKKEAIKTFEN-KYQLTAVGFKDTSDQVIS 191 (338)
T ss_pred EEecccceeeehhccccce--eeecCccccCCeEEEecC-CCceEEEEeecccchhhcccc-ceeEEEEEecccccceee
Confidence 9999999999998877664 444556666777877777 699999999999888877753 567999999999999999
Q ss_pred EeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCC-CCCcccccccc
Q 019349 197 ASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRR-GGRTSSILGSI 275 (342)
Q Consensus 197 ~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~-~~~~~~~~~~~ 275 (342)
|+-|+. |++||++....++.+..+ ..+|+.|..+|+|. ++.+-+.|+++++||++.-.+..+ .....+..-.+
T Consensus 192 ggIdn~-ikvWd~r~~d~~~~lsGh--~DtIt~lsls~~gs---~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnf 265 (338)
T KOG0265|consen 192 GGIDND-IKVWDLRKNDGLYTLSGH--ADTITGLSLSRYGS---FLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNF 265 (338)
T ss_pred ccccCc-eeeeccccCcceEEeecc--cCceeeEEeccCCC---ccccccccceEEEEEecccCCCCceEEEeecchhhh
Confidence 999987 699999999999988644 55799999999999 999999999999999986544332 11111111111
Q ss_pred ccccccccccccccceeeeccCCCccccEEEEEEeCCcEEEEEEe
Q 019349 276 LPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFS 320 (342)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~~~ 320 (342)
.-....+.|+|.. ..+-+++.|..+|+|+..
T Consensus 266 eknlL~cswsp~~--------------~~i~ags~dr~vyvwd~~ 296 (338)
T KOG0265|consen 266 EKNLLKCSWSPNG--------------TKITAGSADRFVYVWDTT 296 (338)
T ss_pred hhhcceeeccCCC--------------CccccccccceEEEeecc
Confidence 1122457788866 678889999999999754
No 56
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.94 E-value=5.3e-26 Score=194.90 Aligned_cols=235 Identities=14% Similarity=0.174 Sum_probs=187.0
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcEEEEEeeC--CEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEE
Q 019349 4 QSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAVG--AFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLF 80 (342)
Q Consensus 4 ~~~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iw 80 (342)
.+..++|+++.|.+++.++.+++.|+ .++||++..++..++..+ .+..+.+...... ++++ +.|++|++|
T Consensus 216 aGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~--vVsg-----s~DRtiK~W 288 (459)
T KOG0288|consen 216 AGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSR--VVSG-----SADRTIKLW 288 (459)
T ss_pred hccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccc--eeec-----cccchhhhh
Confidence 35667899999999999876666655 799999998776554444 4444444333333 4454 369999999
Q ss_pred ECCCCcEEEEEecCCceEEEEEcCCeEEEEE-CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCcc
Q 019349 81 NTTTGTALRELNFLTSILAVRLNKKRLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKG 159 (342)
Q Consensus 81 d~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g 159 (342)
|+.+..|..++-..+.+.+|..++..++... |++|++||.++..+..++..+. .+.++..+.++..+.+++ .|.
T Consensus 289 Dl~k~~C~kt~l~~S~cnDI~~~~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg---~vtSl~ls~~g~~lLsss--RDd 363 (459)
T KOG0288|consen 289 DLQKAYCSKTVLPGSQCNDIVCSISDVISGHFDKKVRFWDIRSADKTRSVPLGG---RVTSLDLSMDGLELLSSS--RDD 363 (459)
T ss_pred hhhhhheeccccccccccceEecceeeeecccccceEEEeccCCceeeEeecCc---ceeeEeeccCCeEEeeec--CCC
Confidence 9999999999888888888888744333333 8899999999999888887654 477788888888888877 589
Q ss_pred EEEEEEccCCceeEEEecc----cCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecC
Q 019349 160 SVLVYNVMELHSHCEIDAH----QAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQS 235 (342)
Q Consensus 160 ~i~iwd~~~~~~~~~~~~h----~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d 235 (342)
++.+.|+++.+...++.+. ....+.+.|||++.|+|+||.||.+ +||++.++++...+.....++.|++++|+|.
T Consensus 364 tl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv-~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~s 442 (459)
T KOG0288|consen 364 TLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSV-YIWSVFTGKLEKVLSLSTSNAAITSLSWNPS 442 (459)
T ss_pred ceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcE-EEEEccCceEEEEeccCCCCcceEEEEEcCC
Confidence 9999999998877776532 2458899999999999999999995 7999999998888765544446999999999
Q ss_pred CCcccEEEEEeCCCcEEEE
Q 019349 236 MQFQDILVATSSSGSLHVF 254 (342)
Q Consensus 236 ~~~~~~l~~~s~dg~i~vw 254 (342)
|. .|++++.++.+.+|
T Consensus 443 G~---~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 443 GS---GLLSADKQKAVTLW 458 (459)
T ss_pred Cc---hhhcccCCcceEec
Confidence 99 89999999999999
No 57
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.94 E-value=1.7e-24 Score=183.07 Aligned_cols=281 Identities=12% Similarity=0.105 Sum_probs=211.2
Q ss_pred CCCCCCCeEEEEEcCCCCEEEEEcCCcE-EEEeCCCCcEEEEEeeC--CEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEE
Q 019349 3 NQSSSYPVFFVSFNQDNSGFALSTKDGF-KIFDSSTGRLCYERAVG--AFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCL 79 (342)
Q Consensus 3 ~~~~~~~V~~l~fs~d~~~la~g~~~g~-~v~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~i 79 (342)
...|..+|++++.+|+.+++|+|+.|-. .+|++.++...++...+ .+..+.+.+++.++++.+ -++.|+|
T Consensus 60 F~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGd-------msG~v~v 132 (399)
T KOG0296|consen 60 FDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGD-------MSGKVLV 132 (399)
T ss_pred hhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecC-------CCccEEE
Confidence 3568899999999999999999988876 99999999887776554 455555555666665554 4899999
Q ss_pred EECCCCcEEEEEe-cCCceEEEEEcCCeEEE-EE--CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCC
Q 019349 80 FNTTTGTALRELN-FLTSILAVRLNKKRLVI-VL--REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPAS 155 (342)
Q Consensus 80 wd~~~~~~~~~~~-~~~~v~~i~~~~~~~~~-~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 155 (342)
|+..++.....+. .-..+.-+.|+|...++ +. |+.+.+|.+.+....+.+..+..+ ..+=.+.|+++.++++.
T Consensus 133 ~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~--ct~G~f~pdGKr~~tgy- 209 (399)
T KOG0296|consen 133 FKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSP--CTCGEFIPDGKRILTGY- 209 (399)
T ss_pred EEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCC--cccccccCCCceEEEEe-
Confidence 9999999888876 34578889999975444 33 899999999998777777765444 33334456688888776
Q ss_pred CCccEEEEEEccCCceeEEEec-ccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEecc-C-----cCce---
Q 019349 156 TTKGSVLVYNVMELHSHCEIDA-HQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRR-G-----TYPS--- 225 (342)
Q Consensus 156 ~~~g~i~iwd~~~~~~~~~~~~-h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~-~-----~~~~--- 225 (342)
.||+|++||..+++++..+.. -..+..++.++.++..+.+|+.++.. ++-...+|+.+..... . .+..
T Consensus 210 -~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~-~~~~~~sgKVv~~~n~~~~~l~~~~e~~~e 287 (399)
T KOG0296|consen 210 -DDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVA-CGVNNGSGKVVNCNNGTVPELKPSQEELDE 287 (399)
T ss_pred -cCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccE-EEEccccceEEEecCCCCccccccchhhhh
Confidence 699999999999999988863 34568899999999999999999975 6888888888776652 1 1111
Q ss_pred eEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEE
Q 019349 226 TIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASV 305 (342)
Q Consensus 226 ~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 305 (342)
.|-++.|+..-. +.|+|+-||+|-|||+.......... +....+...|.+ . .+|
T Consensus 288 sve~~~~ss~lp---L~A~G~vdG~i~iyD~a~~~~R~~c~--------he~~V~~l~w~~-t--------------~~l 341 (399)
T KOG0296|consen 288 SVESIPSSSKLP---LAACGSVDGTIAIYDLAASTLRHICE--------HEDGVTKLKWLN-T--------------DYL 341 (399)
T ss_pred hhhhcccccccc---hhhcccccceEEEEecccchhheecc--------CCCceEEEEEcC-c--------------chh
Confidence 255566666667 89999999999999998765433211 111123446665 3 689
Q ss_pred EEEEeCCcEEEEEEec
Q 019349 306 SVITYNGYFVEYIFSI 321 (342)
Q Consensus 306 ~~~~~dg~v~~~~~~~ 321 (342)
+++|.||.|++|+...
T Consensus 342 ~t~c~~g~v~~wDaRt 357 (399)
T KOG0296|consen 342 LTACANGKVRQWDART 357 (399)
T ss_pred eeeccCceEEeeeccc
Confidence 9999999999997544
No 58
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.94 E-value=5.4e-26 Score=183.35 Aligned_cols=197 Identities=17% Similarity=0.260 Sum_probs=164.8
Q ss_pred CCCCCeEEEEEcCCCCEEEEEcCCcE-EEEeCCCCc---EEEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEE
Q 019349 5 SSSYPVFFVSFNQDNSGFALSTKDGF-KIFDSSTGR---LCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLF 80 (342)
Q Consensus 5 ~~~~~V~~l~fs~d~~~la~g~~~g~-~v~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iw 80 (342)
.+..-|.+++|+.|.++|++|+.+.+ ||||++.-+ ..+..+.+++..+.|+...+.++..+ .|++||+|
T Consensus 98 ~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSa-------dd~tVRLW 170 (334)
T KOG0278|consen 98 EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSA-------DDKTVRLW 170 (334)
T ss_pred hhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeec-------cCCceEEE
Confidence 35567999999999999999988775 999987653 23555668888888888777766553 49999999
Q ss_pred ECCCCcEEEEEecCCceEEEEEcCCeEEEEE--CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCc
Q 019349 81 NTTTGTALRELNFLTSILAVRLNKKRLVIVL--REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTK 158 (342)
Q Consensus 81 d~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 158 (342)
|.++++.+.+++++++|.++.+++++.++.. .+.|.+||..+..+++.++.+.+ +.+.+.+|+...++++| .|
T Consensus 171 D~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~P~n---V~SASL~P~k~~fVaGg--ed 245 (334)
T KOG0278|consen 171 DHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKMPCN---VESASLHPKKEFFVAGG--ED 245 (334)
T ss_pred EeccCcEEEEEecCCCCcceeeccCCCEEEEecCceeEEeccccccceeeccCccc---cccccccCCCceEEecC--cc
Confidence 9999999999999999999999887655543 66999999999999988876544 56666677776777666 79
Q ss_pred cEEEEEEccCCceeEEE-ecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCee
Q 019349 159 GSVLVYNVMELHSHCEI-DAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATK 214 (342)
Q Consensus 159 g~i~iwd~~~~~~~~~~-~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~ 214 (342)
..++.||..+++.+..+ ++|-+||.|+.|+|||...|+||+||+ ||||.+..++.
T Consensus 246 ~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGT-irlWQt~~~~~ 301 (334)
T KOG0278|consen 246 FKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGT-IRLWQTTPGKT 301 (334)
T ss_pred eEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCce-EEEEEecCCCc
Confidence 99999999999988775 899999999999999999999999998 58999976654
No 59
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.5e-25 Score=192.09 Aligned_cols=238 Identities=13% Similarity=0.190 Sum_probs=178.0
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEeCCCCcEEEEEee---CCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEE
Q 019349 4 QSSSYPVFFVSFNQDNSGFALST-KDGFKIFDSSTGRLCYERAV---GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCL 79 (342)
Q Consensus 4 ~~~~~~V~~l~fs~d~~~la~g~-~~g~~v~d~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~i 79 (342)
.++..+|..+.||||.++|++++ ++.+++||..+|........ -.+..++|.+++..+++ |+ .|+++..
T Consensus 266 vgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~-Gs------~dr~i~~ 338 (519)
T KOG0293|consen 266 VGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVT-GS------PDRTIIM 338 (519)
T ss_pred ecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEe-cC------CCCcEEE
Confidence 46788999999999999976554 45579999999976543322 34556677777766443 32 5899999
Q ss_pred EECCCCcEEEEEec--CCceEEEEEcCCeEEE--E-ECCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeC
Q 019349 80 FNTTTGTALRELNF--LTSILAVRLNKKRLVI--V-LREKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPA 154 (342)
Q Consensus 80 wd~~~~~~~~~~~~--~~~v~~i~~~~~~~~~--~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 154 (342)
||+... .+...+. ...|.++++.+|+-.+ . .|..|++|+.++......+.. ...+..++.+.++.++.+.-
T Consensus 339 wdlDgn-~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise---~~~its~~iS~d~k~~LvnL 414 (519)
T KOG0293|consen 339 WDLDGN-ILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISE---EQPITSFSISKDGKLALVNL 414 (519)
T ss_pred ecCCcc-hhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccc---cCceeEEEEcCCCcEEEEEc
Confidence 998643 3443332 2368889987765333 2 388999999987644433332 23577788888888877766
Q ss_pred CCCccEEEEEEccCCceeEEEecccCC--eeEEEECC-CCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEE
Q 019349 155 STTKGSVLVYNVMELHSHCEIDAHQAP--LAAIVLSS-NGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLS 231 (342)
Q Consensus 155 ~~~~g~i~iwd~~~~~~~~~~~~h~~~--v~~i~~s~-dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~ 231 (342)
.+..|++||++..+.++.+.+|+.. |-.-+|-. +..++|+||+|+. |++|+..+|+++.++..+ ...|++++
T Consensus 415 --~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~k-vyIWhr~sgkll~~LsGH--s~~vNcVs 489 (519)
T KOG0293|consen 415 --QDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSK-VYIWHRISGKLLAVLSGH--SKTVNCVS 489 (519)
T ss_pred --ccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCce-EEEEEccCCceeEeecCC--cceeeEEe
Confidence 5789999999988888888898864 22224544 5589999999998 589999999999999654 45699999
Q ss_pred EecCCCcccEEEEEeCCCcEEEEecCCC
Q 019349 232 FGQSMQFQDILVATSSSGSLHVFSPGFA 259 (342)
Q Consensus 232 fs~d~~~~~~l~~~s~dg~i~vwd~~~~ 259 (342)
|+|... .++|++|+||+|+||.....
T Consensus 490 wNP~~p--~m~ASasDDgtIRIWg~~~~ 515 (519)
T KOG0293|consen 490 WNPADP--EMFASASDDGTIRIWGPSDN 515 (519)
T ss_pred cCCCCH--HHhhccCCCCeEEEecCCcc
Confidence 999886 49999999999999987655
No 60
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.94 E-value=1.2e-23 Score=209.46 Aligned_cols=234 Identities=18% Similarity=0.202 Sum_probs=178.9
Q ss_pred CCCeEEEEEcCC-CCEEEEEcCCc-EEEEeCCCCcEEEEE--eeCCEEEEEEcC-CCCeEEEEcCCCCCCCCCCeEEEEE
Q 019349 7 SYPVFFVSFNQD-NSGFALSTKDG-FKIFDSSTGRLCYER--AVGAFSIVEMLY-SSSLLAIVGAGEQPSLSPRRLCLFN 81 (342)
Q Consensus 7 ~~~V~~l~fs~d-~~~la~g~~~g-~~v~d~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~d~~i~iwd 81 (342)
...|.+++|+|. +.+|++|+.++ +++||+.+++.+... |.+.+..+.+.+ +++.++.++ .|++|++||
T Consensus 532 ~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs-------~Dg~v~iWd 604 (793)
T PLN00181 532 RSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGS-------DDGSVKLWS 604 (793)
T ss_pred cCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEc-------CCCEEEEEE
Confidence 357889999874 67899888877 599999988766544 445666677764 345555554 489999999
Q ss_pred CCCCcEEEEEecCCceEEEEEcC---CeEEEEE-CCeEEEEECCCCc-eeeEEeCCCCCceEEEEeeCCCccEEEEeCCC
Q 019349 82 TTTGTALRELNFLTSILAVRLNK---KRLVIVL-REKTYIYDANTLA-ILDTIDTVPNLKGLCAFSPSLNACFLAVPAST 156 (342)
Q Consensus 82 ~~~~~~~~~~~~~~~v~~i~~~~---~~~~~~~-d~~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 156 (342)
+.++..+..+.....+.++.|++ ..+++++ |+.|++||+++.+ .+..+..|.. .+.++.+. ++..+++++
T Consensus 605 ~~~~~~~~~~~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~--~V~~v~f~-~~~~lvs~s-- 679 (793)
T PLN00181 605 INQGVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSK--TVSYVRFV-DSSTLVSSS-- 679 (793)
T ss_pred CCCCcEEEEEecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCC--CEEEEEEe-CCCEEEEEE--
Confidence 99999998888777899999853 2444444 8899999998765 3455544443 45555554 456787777
Q ss_pred CccEEEEEEccCC------ceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEecc----------
Q 019349 157 TKGSVLVYNVMEL------HSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRR---------- 220 (342)
Q Consensus 157 ~~g~i~iwd~~~~------~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~---------- 220 (342)
.|++|++||+... +++..+.+|...+++++|+|++.+||+|+.||++ ++|+......+..+..
T Consensus 680 ~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v-~iw~~~~~~~~~s~~~~~~~~~~~~~ 758 (793)
T PLN00181 680 TDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEV-FVYHKAFPMPVLSYKFKTIDPVSGLE 758 (793)
T ss_pred CCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEE-EEEECCCCCceEEEecccCCcccccc
Confidence 6899999999743 5678899999999999999999999999999985 7999876654433211
Q ss_pred -CcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEec
Q 019349 221 -GTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSP 256 (342)
Q Consensus 221 -~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~ 256 (342)
..+...|.+++|+|++. +|++|+.||+|+||++
T Consensus 759 ~~~~~~~V~~v~ws~~~~---~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 759 VDDASQFISSVCWRGQSS---TLVAANSTGNIKILEM 792 (793)
T ss_pred cCCCCcEEEEEEEcCCCC---eEEEecCCCcEEEEec
Confidence 11223599999999999 9999999999999986
No 61
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.94 E-value=2.9e-24 Score=185.34 Aligned_cols=282 Identities=14% Similarity=0.167 Sum_probs=210.5
Q ss_pred CCCeEEEEEcCCCCEEEEEcCC-cEEEEeCCCCcEEEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCC
Q 019349 7 SYPVFFVSFNQDNSGFALSTKD-GFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTG 85 (342)
Q Consensus 7 ~~~V~~l~fs~d~~~la~g~~~-g~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~ 85 (342)
...|.++...|....+++|+.| ...+||..+.+++....++...+....+......+..+ +.|..|++|.....
T Consensus 219 ~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~a-----Sad~~i~vws~~~~ 293 (506)
T KOG0289|consen 219 TPGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITA-----SADEIIRVWSVPLS 293 (506)
T ss_pred CCCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeec-----CCcceEEeeccccc
Confidence 3578888888887788899888 68999999888776666666666665555544333333 25899999998766
Q ss_pred cEEEEE-ecCCceEEEEEcCC--eEEEEE-CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEE
Q 019349 86 TALREL-NFLTSILAVRLNKK--RLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSV 161 (342)
Q Consensus 86 ~~~~~~-~~~~~v~~i~~~~~--~~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i 161 (342)
.+.... .+..+|+.+..++. +++.++ |+...+.|++++..+.......+.....+..++||+..++++. .||.|
T Consensus 294 s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt--~d~~v 371 (506)
T KOG0289|consen 294 SEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGT--PDGVV 371 (506)
T ss_pred cCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccC--CCceE
Confidence 555443 45668999888765 555555 7799999999998887765545556788888999998877766 69999
Q ss_pred EEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccE
Q 019349 162 LVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDI 241 (342)
Q Consensus 162 ~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~ 241 (342)
+|||+.++..+..|.+|.++|..|+|+.+|-+||++++|+. |++||++.-+..+++..... .++.++.|.+.|+ +
T Consensus 372 kiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~-V~lwDLRKl~n~kt~~l~~~-~~v~s~~fD~SGt---~ 446 (506)
T KOG0289|consen 372 KIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGS-VKLWDLRKLKNFKTIQLDEK-KEVNSLSFDQSGT---Y 446 (506)
T ss_pred EEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCe-EEEEEehhhcccceeecccc-ccceeEEEcCCCC---e
Confidence 99999999999999999999999999999999999999997 58999998887777754332 2599999999999 9
Q ss_pred EEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEEEEEEeCCcEEEEEE
Q 019349 242 LVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIF 319 (342)
Q Consensus 242 l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~~ 319 (342)
|+.++.|=+|++++-.+.. +.++-....+.-....+.|+....+++++|.|..+++|.+
T Consensus 447 L~~~g~~l~Vy~~~k~~k~-------------------W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 447 LGIAGSDLQVYICKKKTKS-------------------WTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred EEeecceeEEEEEeccccc-------------------ceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 9999877666666522211 0001111111112234455655678999999999998865
No 62
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.94 E-value=7.7e-26 Score=193.92 Aligned_cols=277 Identities=12% Similarity=0.129 Sum_probs=207.6
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcE--EEEE--eeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEE
Q 019349 4 QSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRL--CYER--AVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLC 78 (342)
Q Consensus 4 ~~~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~ 78 (342)
.-|.+.|..+.|-++...|++|+.|. +++|+....+. .-.+ ..+++..+.+..+...+ ++++ .|+.++
T Consensus 172 d~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~-iAas------~d~~~r 244 (459)
T KOG0288|consen 172 DAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHV-IAAS------NDKNLR 244 (459)
T ss_pred hccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceE-Eeec------CCCcee
Confidence 35778999999999988899887776 59999877652 2222 23456555555444444 3443 589999
Q ss_pred EEECCCCcEEEEEec-CCceEEEEEcCCeE-EEEE--CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeC
Q 019349 79 LFNTTTGTALRELNF-LTSILAVRLNKKRL-VIVL--REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPA 154 (342)
Q Consensus 79 iwd~~~~~~~~~~~~-~~~v~~i~~~~~~~-~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 154 (342)
+||+...+...++.. ...|+++.|..... ++.. |.+|++||+....+.+++-.......+++- ...+++|
T Consensus 245 ~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~------~~~~~Sg 318 (459)
T KOG0288|consen 245 LWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCS------ISDVISG 318 (459)
T ss_pred eeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccccccccceEec------ceeeeec
Confidence 999999988877764 45899999877665 3333 789999999998777776443333334331 2455667
Q ss_pred CCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcC--ceeEEEEEE
Q 019349 155 STTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTY--PSTIFSLSF 232 (342)
Q Consensus 155 ~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~--~~~v~~l~f 232 (342)
. .|+.|+.||.++..+....+.|. .|+++..+++|..|.+++.|.+ ++++|+++.+....+..... .+.++.+.|
T Consensus 319 H-~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdt-l~viDlRt~eI~~~~sA~g~k~asDwtrvvf 395 (459)
T KOG0288|consen 319 H-FDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDT-LKVIDLRTKEIRQTFSAEGFKCASDWTRVVF 395 (459)
T ss_pred c-cccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCc-eeeeecccccEEEEeeccccccccccceeEE
Confidence 6 79999999999999999998876 8999999999999999999987 58999999887777754321 223888999
Q ss_pred ecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEEEEEEeCC
Q 019349 233 GQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNG 312 (342)
Q Consensus 233 s~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg 312 (342)
||++. |+|+||.||.|+||++.+++.++....+.. .+......|+|.+ ..+++++.++
T Consensus 396 Spd~~---YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s-----~~aI~s~~W~~sG--------------~~Llsadk~~ 453 (459)
T KOG0288|consen 396 SPDGS---YVAAGSADGSVYIWSVFTGKLEKVLSLSTS-----NAAITSLSWNPSG--------------SGLLSADKQK 453 (459)
T ss_pred CCCCc---eeeeccCCCcEEEEEccCceEEEEeccCCC-----CcceEEEEEcCCC--------------chhhcccCCc
Confidence 99999 999999999999999999876553221111 1134556888877 6799999999
Q ss_pred cEEEEE
Q 019349 313 YFVEYI 318 (342)
Q Consensus 313 ~v~~~~ 318 (342)
.+.+|.
T Consensus 454 ~v~lW~ 459 (459)
T KOG0288|consen 454 AVTLWT 459 (459)
T ss_pred ceEecC
Confidence 999883
No 63
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=1.6e-24 Score=175.17 Aligned_cols=277 Identities=14% Similarity=0.185 Sum_probs=187.8
Q ss_pred CCeEEEEEcCC-CCEEEEEc--CCc------EEEEeCC-CCcEEE--EEe-eCCEEEEEEcCCCCeEEEEcCCCCCCCCC
Q 019349 8 YPVFFVSFNQD-NSGFALST--KDG------FKIFDSS-TGRLCY--ERA-VGAFSIVEMLYSSSLLAIVGAGEQPSLSP 74 (342)
Q Consensus 8 ~~V~~l~fs~d-~~~la~g~--~~g------~~v~d~~-~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~d 74 (342)
-.=+++.|||= .++||++. .-| +.|-++. ...+.. ... .....-+.+..+...++++..| |
T Consensus 9 f~GysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~G------D 82 (311)
T KOG0277|consen 9 FHGYSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASG------D 82 (311)
T ss_pred cccceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEec------C
Confidence 34578999992 23344432 212 4555664 222221 111 2445556666665444444433 9
Q ss_pred CeEEEEECCC-CcEEEEEe-cCCceEEEEEcCC---eEEEEE-CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCcc
Q 019349 75 RRLCLFNTTT-GTALRELN-FLTSILAVRLNKK---RLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNAC 148 (342)
Q Consensus 75 ~~i~iwd~~~-~~~~~~~~-~~~~v~~i~~~~~---~~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (342)
++++|||+.. ..++..++ +..+|.++.+++. .++..+ |++|++|+...++.+.++..+........++|+- ..
T Consensus 83 GSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~-~n 161 (311)
T KOG0277|consen 83 GSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHI-PN 161 (311)
T ss_pred ceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCC-CC
Confidence 9999999643 34666654 4458999999753 333334 9999999999999999987755543334444432 34
Q ss_pred EEEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECC-CCCEEEEEeCCCcEEEEEEcCCC-eeEEEeccCcCcee
Q 019349 149 FLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSS-NGMYIATASEQGTIIRVFLVSEA-TKSYSFRRGTYPST 226 (342)
Q Consensus 149 ~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~-dg~~lat~s~dg~~irlwd~~~~-~~~~~~~~~~~~~~ 226 (342)
.+++++ .||++++||++.......+++|...|.|+.|+. +.+.|+||+.|+. ||.||+++- ..+.++.. +.-.
T Consensus 162 lfas~S--gd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~-vr~wDir~~r~pl~eL~g--h~~A 236 (311)
T KOG0277|consen 162 LFASAS--GDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNL-VRGWDIRNLRTPLFELNG--HGLA 236 (311)
T ss_pred eEEEcc--CCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCce-EEEEehhhccccceeecC--CceE
Confidence 666666 589999999987655556999999999999997 7789999999986 699999875 45666643 3456
Q ss_pred EEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCC-CCCCCCccccccccccccccccccccccceeeeccCCCccccEE
Q 019349 227 IFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAIN-QRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASV 305 (342)
Q Consensus 227 v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 305 (342)
|..+.|||-.. ++||++|-|-|++|||.+.+.. ..+..+++.|.-+ .-|++-. ..++
T Consensus 237 VRkvk~Sph~~--~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g-------~Dws~~~-------------~~~v 294 (311)
T KOG0277|consen 237 VRKVKFSPHHA--SLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCG-------LDWSLFD-------------PGQV 294 (311)
T ss_pred EEEEecCcchh--hHhhhccccceEEecccccchhhhhhhhccceEEec-------ccccccc-------------Ccee
Confidence 99999999876 5999999999999999875542 2222333333221 2344421 2689
Q ss_pred EEEEeCCcEEEEE
Q 019349 306 SVITYNGYFVEYI 318 (342)
Q Consensus 306 ~~~~~dg~v~~~~ 318 (342)
+.++-|+.+++|+
T Consensus 295 As~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 295 ASTGWDELLYVWN 307 (311)
T ss_pred eecccccceeeec
Confidence 9999999999996
No 64
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.94 E-value=6.1e-26 Score=198.07 Aligned_cols=262 Identities=10% Similarity=0.054 Sum_probs=195.8
Q ss_pred EeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCC-CcEEEEEecC-CceEEEEEcCCeE--EEEE-CCeEEEE
Q 019349 44 RAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTT-GTALRELNFL-TSILAVRLNKKRL--VIVL-REKTYIY 118 (342)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~-~~~~~~~~~~-~~v~~i~~~~~~~--~~~~-d~~i~i~ 118 (342)
.|..++..+.+.+....|++.++ .|++|+|||+.. +++++++..+ .+|++++|+++.. +.++ |..+++|
T Consensus 212 gH~kgvsai~~fp~~~hLlLS~g------mD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlw 285 (503)
T KOG0282|consen 212 GHTKGVSAIQWFPKKGHLLLSGG------MDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLW 285 (503)
T ss_pred CCccccchhhhccceeeEEEecC------CCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeee
Confidence 34456666667665666666665 699999999876 8889888755 4899999988753 3344 9999999
Q ss_pred ECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEe
Q 019349 119 DANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATAS 198 (342)
Q Consensus 119 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s 198 (342)
|+++|+++..+.... ...++.+.|++..++.+|. .|+.|+.||+++++.++.+..|-++|+.|.|-++|++++++|
T Consensus 286 DtETG~~~~~f~~~~---~~~cvkf~pd~~n~fl~G~-sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissS 361 (503)
T KOG0282|consen 286 DTETGQVLSRFHLDK---VPTCVKFHPDNQNIFLVGG-SDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSS 361 (503)
T ss_pred ccccceEEEEEecCC---CceeeecCCCCCcEEEEec-CCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeec
Confidence 999999999987643 3556677777744444443 689999999999999999999999999999999999999999
Q ss_pred CCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCccccc-ccccc
Q 019349 199 EQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSIL-GSILP 277 (342)
Q Consensus 199 ~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~-~~~~~ 277 (342)
+|+++ |+|+.+.+-.+...... ......+|..+|++. ++++-+.|+.|.+|.+...-+....++..++. .++
T Consensus 362 Ddks~-riWe~~~~v~ik~i~~~-~~hsmP~~~~~P~~~---~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGy-- 434 (503)
T KOG0282|consen 362 DDKSV-RIWENRIPVPIKNIADP-EMHTMPCLTLHPNGK---WFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGY-- 434 (503)
T ss_pred cCccE-EEEEcCCCccchhhcch-hhccCcceecCCCCC---eehhhccCceEEEEecccccccCHhhhhcceeccCc--
Confidence 99985 79999988776554332 233477899999999 99999999999999976554433322222211 111
Q ss_pred ccccccccccccceeeeccCCCccccEEEEEEeCCcEEEEEEecCC------CCeeeeEEEeeeec
Q 019349 278 ESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSINN------CCESTWTLDREFNL 337 (342)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~~~~~~------~~~~~~~~~~~~~~ 337 (342)
...+.|.|++.+|++|.+||.+++|++.+-+ .-++.|..+-=|++
T Consensus 435 ---------------s~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~ 485 (503)
T KOG0282|consen 435 ---------------SCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPV 485 (503)
T ss_pred ---------------eeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCC
Confidence 1234456777999999999999999987543 22345665555554
No 65
>PTZ00420 coronin; Provisional
Probab=99.94 E-value=1.8e-23 Score=195.77 Aligned_cols=223 Identities=11% Similarity=0.059 Sum_probs=156.5
Q ss_pred CCCeEEEEECCCCcEEEEEec-CCceEEEEEcCC---eEEEEE-CCeEEEEECCCCc--------eeeEEeCCCCCceEE
Q 019349 73 SPRRLCLFNTTTGTALRELNF-LTSILAVRLNKK---RLVIVL-REKTYIYDANTLA--------ILDTIDTVPNLKGLC 139 (342)
Q Consensus 73 ~d~~i~iwd~~~~~~~~~~~~-~~~v~~i~~~~~---~~~~~~-d~~i~i~d~~~~~--------~~~~~~~~~~~~~~~ 139 (342)
.++.|++|+..+...+..+.. ...|.+++|+|+ .++.++ |++|+|||+.++. .+..+..| ...+.
T Consensus 52 ~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH--~~~V~ 129 (568)
T PTZ00420 52 LIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGH--KKKIS 129 (568)
T ss_pred ceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecC--CCcEE
Confidence 578999999887777777654 458999999975 333444 8899999997642 12234433 34577
Q ss_pred EEeeCCCccEE-EEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEe
Q 019349 140 AFSPSLNACFL-AVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSF 218 (342)
Q Consensus 140 ~~~~~~~~~~l-~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~ 218 (342)
+++++|++..+ ++++ .||+|+|||+++++.+..+. |...|.+++|+|+|++|++++.|++ |+|||+++++.+.++
T Consensus 130 sVaf~P~g~~iLaSgS--~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~-IrIwD~Rsg~~i~tl 205 (568)
T PTZ00420 130 IIDWNPMNYYIMCSSG--FDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKH-MHIIDPRKQEIASSF 205 (568)
T ss_pred EEEECCCCCeEEEEEe--CCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCE-EEEEECCCCcEEEEE
Confidence 77788877655 5666 58999999999998777775 6678999999999999999999987 589999999998888
Q ss_pred ccCcCc---eeEEEEEEecCCCcccEEEEEeCCC----cEEEEecCCCCCCCCCCCccccccccccccccccccccccce
Q 019349 219 RRGTYP---STIFSLSFGQSMQFQDILVATSSSG----SLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHV 291 (342)
Q Consensus 219 ~~~~~~---~~v~~l~fs~d~~~~~~l~~~s~dg----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (342)
..+... ..+....|++++. +|++++.|+ +|+|||++....+.... . +.. .+..+...|+++.
T Consensus 206 ~gH~g~~~s~~v~~~~fs~d~~---~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~---~-ld~-~~~~L~p~~D~~t--- 274 (568)
T PTZ00420 206 HIHDGGKNTKNIWIDGLGGDDN---YILSTGFSKNNMREMKLWDLKNTTSALVTM---S-IDN-ASAPLIPHYDEST--- 274 (568)
T ss_pred ecccCCceeEEEEeeeEcCCCC---EEEEEEcCCCCccEEEEEECCCCCCceEEE---E-ecC-CccceEEeeeCCC---
Confidence 644321 1134445778988 888888774 79999998643322100 0 000 0001111333322
Q ss_pred eeeccCCCccccEEEEEEeCCcEEEEEEecC
Q 019349 292 LRNAFPAGVKRASVSVITYNGYFVEYIFSIN 322 (342)
Q Consensus 292 ~~~~~~~~~~~~~l~~~~~dg~v~~~~~~~~ 322 (342)
+..+++|++|+.+++|++..+
T Consensus 275 ----------g~l~lsGkGD~tIr~~e~~~~ 295 (568)
T PTZ00420 275 ----------GLIYLIGKGDGNCRYYQHSLG 295 (568)
T ss_pred ----------CCEEEEEECCCeEEEEEccCC
Confidence 256888999999999998654
No 66
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=5.5e-24 Score=192.23 Aligned_cols=273 Identities=12% Similarity=0.099 Sum_probs=213.9
Q ss_pred EEEEEcCCCCEEEEEcCCcEEEEeCCCCcEEE--EEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEE
Q 019349 11 FFVSFNQDNSGFALSTKDGFKIFDSSTGRLCY--ERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTAL 88 (342)
Q Consensus 11 ~~l~fs~d~~~la~g~~~g~~v~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~ 88 (342)
+-+.|+ ..+.||+|....+.+|+-.+++... ......+..+.+..++.++++... ++.|.|||..+.+.+
T Consensus 181 nlldWs-s~n~laValg~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~-------~g~v~iwD~~~~k~~ 252 (484)
T KOG0305|consen 181 NLLDWS-SANVLAVALGQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTS-------DGTVQIWDVKEQKKT 252 (484)
T ss_pred hHhhcc-cCCeEEEEecceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeec-------CCeEEEEehhhcccc
Confidence 446788 4557999999999999998887543 333467888899999999987764 899999999998888
Q ss_pred EEEec--CCceEEEEEcCCeEEEEE-CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEE
Q 019349 89 RELNF--LTSILAVRLNKKRLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYN 165 (342)
Q Consensus 89 ~~~~~--~~~v~~i~~~~~~~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd 165 (342)
..+.. ...|-+++|+...+.... ++.|..+|++..+.... ....+...+|.+.+++++.++|++| .|+.+.|||
T Consensus 253 ~~~~~~h~~rvg~laW~~~~lssGsr~~~I~~~dvR~~~~~~~-~~~~H~qeVCgLkws~d~~~lASGg--nDN~~~Iwd 329 (484)
T KOG0305|consen 253 RTLRGSHASRVGSLAWNSSVLSSGSRDGKILNHDVRISQHVVS-TLQGHRQEVCGLKWSPDGNQLASGG--NDNVVFIWD 329 (484)
T ss_pred ccccCCcCceeEEEeccCceEEEecCCCcEEEEEEecchhhhh-hhhcccceeeeeEECCCCCeeccCC--CccceEecc
Confidence 88776 558999999976666666 88999999988765544 2344566899999999999999988 689999999
Q ss_pred ccCCceeEEEecccCCeeEEEECC-CCCEEEEEe--CCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEE
Q 019349 166 VMELHSHCEIDAHQAPLAAIVLSS-NGMYIATAS--EQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDIL 242 (342)
Q Consensus 166 ~~~~~~~~~~~~h~~~v~~i~~s~-dg~~lat~s--~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l 242 (342)
....+++..+..|..+|.+++|+| ....||+|+ .|+. |++||+.+|+.+.....+ ..|.+|.|++..+ -|
T Consensus 330 ~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~-i~fwn~~~g~~i~~vdtg---sQVcsL~Wsk~~k---Ei 402 (484)
T KOG0305|consen 330 GLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRC-IKFWNTNTGARIDSVDTG---SQVCSLIWSKKYK---EL 402 (484)
T ss_pred CCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccE-EEEEEcCCCcEecccccC---CceeeEEEcCCCC---EE
Confidence 988889999999999999999999 678899975 5765 799999999998877543 4599999999986 45
Q ss_pred EEE--eCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEEEEEEeCCcEEEEEEe
Q 019349 243 VAT--SSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFS 320 (342)
Q Consensus 243 ~~~--s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~~~ 320 (342)
+++ ..++.|.||+..+.+.... +.++ ...+..++..|++..|++++.|.+++.|++-
T Consensus 403 ~sthG~s~n~i~lw~~ps~~~~~~-------l~gH--------------~~RVl~la~SPdg~~i~t~a~DETlrfw~~f 461 (484)
T KOG0305|consen 403 LSTHGYSENQITLWKYPSMKLVAE-------LLGH--------------TSRVLYLALSPDGETIVTGAADETLRFWNLF 461 (484)
T ss_pred EEecCCCCCcEEEEeccccceeee-------ecCC--------------cceeEEEEECCCCCEEEEecccCcEEecccc
Confidence 444 3567899999887544221 1122 2222233334445899999999999999987
Q ss_pred cC
Q 019349 321 IN 322 (342)
Q Consensus 321 ~~ 322 (342)
..
T Consensus 462 ~~ 463 (484)
T KOG0305|consen 462 DE 463 (484)
T ss_pred CC
Confidence 64
No 67
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=4.6e-24 Score=186.60 Aligned_cols=272 Identities=15% Similarity=0.181 Sum_probs=193.5
Q ss_pred CCCCeEEEEEcCCCCE-EEEEcCCcEEEEeCCCCcEE--EEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEEC
Q 019349 6 SSYPVFFVSFNQDNSG-FALSTKDGFKIFDSSTGRLC--YERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNT 82 (342)
Q Consensus 6 ~~~~V~~l~fs~d~~~-la~g~~~g~~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~ 82 (342)
..++|.+++|||..-+ +|+.+.-.+.+|+..+.... +..-...+..+++..++..++... ..+.|+++|.
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD-------~sG~V~vfD~ 97 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGD-------ESGHVKVFDM 97 (487)
T ss_pred ccCcceeEecCCCCCCceEEecccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccC-------CcCcEEEecc
Confidence 3468999999997755 88888889999998765332 333346677788887777765443 4799999997
Q ss_pred CCCcEEEEEe-cCCceEEEEEcCCe--EEE-EE-CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCC
Q 019349 83 TTGTALRELN-FLTSILAVRLNKKR--LVI-VL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTT 157 (342)
Q Consensus 83 ~~~~~~~~~~-~~~~v~~i~~~~~~--~~~-~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 157 (342)
++...+..+. +..++..+.|+++. +++ ++ |..+++||+.+...+..+..|.+ .+-+.+..|.+..++..|+ .
T Consensus 98 k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htD--YVR~g~~~~~~~hivvtGs-Y 174 (487)
T KOG0310|consen 98 KSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTD--YVRCGDISPANDHIVVTGS-Y 174 (487)
T ss_pred ccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcc--eeEeeccccCCCeEEEecC-C
Confidence 6644444443 45688888887753 222 33 45899999999876556666555 4555566555444444444 6
Q ss_pred ccEEEEEEccCC-ceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCe-eEEEeccCcCceeEEEEEEecC
Q 019349 158 KGSVLVYNVMEL-HSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEAT-KSYSFRRGTYPSTIFSLSFGQS 235 (342)
Q Consensus 158 ~g~i~iwd~~~~-~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~-~~~~~~~~~~~~~v~~l~fs~d 235 (342)
||.|++||++.. ..+..+ .|..||..|.+-|.|..+|+|+ |..+|+||+.+|. .+..+.. |...|+||++..+
T Consensus 175 Dg~vrl~DtR~~~~~v~el-nhg~pVe~vl~lpsgs~iasAg--Gn~vkVWDl~~G~qll~~~~~--H~KtVTcL~l~s~ 249 (487)
T KOG0310|consen 175 DGKVRLWDTRSLTSRVVEL-NHGCPVESVLALPSGSLIASAG--GNSVKVWDLTTGGQLLTSMFN--HNKTVTCLRLASD 249 (487)
T ss_pred CceEEEEEeccCCceeEEe-cCCCceeeEEEcCCCCEEEEcC--CCeEEEEEecCCceehhhhhc--ccceEEEEEeecC
Confidence 999999999887 455555 5899999999999999999998 4568999999654 4444432 4557999999999
Q ss_pred CCcccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEEEEEEeCCcEE
Q 019349 236 MQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFV 315 (342)
Q Consensus 236 ~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~ 315 (342)
+. .|++++-|+.|++||+..-+... -|...+ .+..++..+++..+++|-+||.+-
T Consensus 250 ~~---rLlS~sLD~~VKVfd~t~~Kvv~-------------------s~~~~~---pvLsiavs~dd~t~viGmsnGlv~ 304 (487)
T KOG0310|consen 250 ST---RLLSGSLDRHVKVFDTTNYKVVH-------------------SWKYPG---PVLSIAVSPDDQTVVIGMSNGLVS 304 (487)
T ss_pred Cc---eEeecccccceEEEEccceEEEE-------------------eeeccc---ceeeEEecCCCceEEEecccceee
Confidence 98 99999999999999976554322 122221 111222344557899999999877
Q ss_pred EE
Q 019349 316 EY 317 (342)
Q Consensus 316 ~~ 317 (342)
+=
T Consensus 305 ~r 306 (487)
T KOG0310|consen 305 IR 306 (487)
T ss_pred ee
Confidence 55
No 68
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.93 E-value=1.5e-23 Score=195.75 Aligned_cols=240 Identities=15% Similarity=0.202 Sum_probs=192.7
Q ss_pred CCCCCCCeEEEEEcCCCCEEEEEcCC-cEEEEeCCCCcEEEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEE
Q 019349 3 NQSSSYPVFFVSFNQDNSGFALSTKD-GFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFN 81 (342)
Q Consensus 3 ~~~~~~~V~~l~fs~d~~~la~g~~~-g~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd 81 (342)
...|.+.|.+++|..-+..|++|+.| .++|||+.+++.......+.-.+..+... ....+ +| +.|++|++||
T Consensus 245 l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~-~~~~~-sg-----s~D~tVkVW~ 317 (537)
T KOG0274|consen 245 LVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTID-PFLLV-SG-----SRDNTVKVWD 317 (537)
T ss_pred ccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEcc-CceEe-ec-----cCCceEEEEe
Confidence 45788999999999978889999855 58999999998877766444333333322 23322 32 2599999999
Q ss_pred CCCCcEEEEEe-cCCceEEEEEcCCeEEEEE-CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCcc
Q 019349 82 TTTGTALRELN-FLTSILAVRLNKKRLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKG 159 (342)
Q Consensus 82 ~~~~~~~~~~~-~~~~v~~i~~~~~~~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g 159 (342)
+.++.++..+. +..+|+++..+.+.++..+ |++|++||..++++++++..|.+ .+.++...+. ..++.++ .|+
T Consensus 318 v~n~~~l~l~~~h~~~V~~v~~~~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~--~V~sl~~~~~-~~~~Sgs--~D~ 392 (537)
T KOG0274|consen 318 VTNGACLNLLRGHTGPVNCVQLDEPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTG--RVYSLIVDSE-NRLLSGS--LDT 392 (537)
T ss_pred ccCcceEEEeccccccEEEEEecCCEEEEEecCceEEEEEhhhceeeeeecCCcc--eEEEEEecCc-ceEEeee--ecc
Confidence 99999999988 7789999999987777777 88999999999999999988655 4566655543 4666665 689
Q ss_pred EEEEEEccCC-ceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCc
Q 019349 160 SVLVYNVMEL-HSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQF 238 (342)
Q Consensus 160 ~i~iwd~~~~-~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~ 238 (342)
+|++||+.+. +++.++.+|..-+..+.+ .+++|++++.||+ ||+||..+++++..+... +...|.++++. ..
T Consensus 393 ~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~-Ik~WD~~~~~~~~~~~~~-~~~~v~~l~~~--~~- 465 (537)
T KOG0274|consen 393 TIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSSADGT-IKLWDAEEGECLRTLEGR-HVGGVSALALG--KE- 465 (537)
T ss_pred ceEeecCCchhhhhhhhcCCccccccccc--ccceeEecccccc-EEEeecccCceeeeeccC-CcccEEEeecC--cc-
Confidence 9999999999 999999999999877765 5689999999997 699999999999988643 34568888876 23
Q ss_pred ccEEEEEeCCCcEEEEecCCCCCCC
Q 019349 239 QDILVATSSSGSLHVFSPGFAINQR 263 (342)
Q Consensus 239 ~~~l~~~s~dg~i~vwd~~~~~~~~ 263 (342)
.+++++.||++++||++.....+
T Consensus 466 --~il~s~~~~~~~l~dl~~~~~~~ 488 (537)
T KOG0274|consen 466 --EILCSSDDGSVKLWDLRSGTLIR 488 (537)
T ss_pred --eEEEEecCCeeEEEecccCchhh
Confidence 79999999999999999887644
No 69
>PTZ00421 coronin; Provisional
Probab=99.93 E-value=1.2e-22 Score=189.27 Aligned_cols=240 Identities=12% Similarity=0.069 Sum_probs=173.7
Q ss_pred CCCeEEEEEcCCCCEEEEEcCCcE-EEEeCCCCcEE---------------EEEeeCCEEEEEEcC-CCCeEEEEcCCCC
Q 019349 7 SYPVFFVSFNQDNSGFALSTKDGF-KIFDSSTGRLC---------------YERAVGAFSIVEMLY-SSSLLAIVGAGEQ 69 (342)
Q Consensus 7 ~~~V~~l~fs~d~~~la~g~~~g~-~v~d~~~~~~~---------------~~~~~~~~~~~~~~~-~~~~~~~~~~g~~ 69 (342)
-..|+...+++|+..+++++.+.+ ..|+...+..+ +..|.+.+..+.+.+ +.+.++.++
T Consensus 20 ~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS---- 95 (493)
T PTZ00421 20 FLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTAS---- 95 (493)
T ss_pred eeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEe----
Confidence 345777778888777777777775 77875444222 233445677777776 556666555
Q ss_pred CCCCCCeEEEEECCCCc-------EEEEEe-cCCceEEEEEcCCe---EEEEE-CCeEEEEECCCCceeeEEeCCCCCce
Q 019349 70 PSLSPRRLCLFNTTTGT-------ALRELN-FLTSILAVRLNKKR---LVIVL-REKTYIYDANTLAILDTIDTVPNLKG 137 (342)
Q Consensus 70 ~~~~d~~i~iwd~~~~~-------~~~~~~-~~~~v~~i~~~~~~---~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~ 137 (342)
.|++|++||+.++. ++..+. +...|.+++|+|+. ++.++ |++|+|||+.+++.+..+..+.. .
T Consensus 96 ---~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~--~ 170 (493)
T PTZ00421 96 ---EDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSD--Q 170 (493)
T ss_pred ---CCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCC--c
Confidence 49999999997652 344444 44589999999852 33344 88999999999988877765544 5
Q ss_pred EEEEeeCCCccEEEEeCCCCccEEEEEEccCCceeEEEecccCC-eeEEEECCCCCEEEEEe----CCCcEEEEEEcCCC
Q 019349 138 LCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAP-LAAIVLSSNGMYIATAS----EQGTIIRVFLVSEA 212 (342)
Q Consensus 138 ~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~-v~~i~~s~dg~~lat~s----~dg~~irlwd~~~~ 212 (342)
+.++++++++.+|++++ .||.|++||+++++.+..+.+|.+. +..+.|.+++..|++++ .|++ |++||+++.
T Consensus 171 V~sla~spdG~lLatgs--~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~-VklWDlr~~ 247 (493)
T PTZ00421 171 ITSLEWNLDGSLLCTTS--KDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQ-IMLWDTRKM 247 (493)
T ss_pred eEEEEEECCCCEEEEec--CCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCe-EEEEeCCCC
Confidence 77788888888999888 6899999999999999999999875 44678899888888765 3666 689999876
Q ss_pred eeEEEeccCcCceeEEEEEEecCCCcccEEEEEe-CCCcEEEEecCCCCC
Q 019349 213 TKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATS-SSGSLHVFSPGFAIN 261 (342)
Q Consensus 213 ~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s-~dg~i~vwd~~~~~~ 261 (342)
..............+....|++|+. +|++++ .|++|++||+..+..
T Consensus 248 ~~p~~~~~~d~~~~~~~~~~d~d~~---~L~lggkgDg~Iriwdl~~~~~ 294 (493)
T PTZ00421 248 ASPYSTVDLDQSSALFIPFFDEDTN---LLYIGSKGEGNIRCFELMNERL 294 (493)
T ss_pred CCceeEeccCCCCceEEEEEcCCCC---EEEEEEeCCCeEEEEEeeCCce
Confidence 5332221111223356677899998 888877 599999999987653
No 70
>PTZ00421 coronin; Provisional
Probab=99.93 E-value=8.7e-23 Score=190.11 Aligned_cols=203 Identities=10% Similarity=0.068 Sum_probs=144.8
Q ss_pred cCCceEEEEEcC-C--eEEEEE-CCeEEEEECCCCc-------eeeEEeCCCCCceEEEEeeCCCc-cEEEEeCCCCccE
Q 019349 93 FLTSILAVRLNK-K--RLVIVL-REKTYIYDANTLA-------ILDTIDTVPNLKGLCAFSPSLNA-CFLAVPASTTKGS 160 (342)
Q Consensus 93 ~~~~v~~i~~~~-~--~~~~~~-d~~i~i~d~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~g~ 160 (342)
+.+.|.+++|+| + .++.++ |++|++||+.+.. .+..+..|.. .+.+++++|++ .+|++++ .|++
T Consensus 74 H~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~--~V~~l~f~P~~~~iLaSgs--~Dgt 149 (493)
T PTZ00421 74 QEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTK--KVGIVSFHPSAMNVLASAG--ADMV 149 (493)
T ss_pred CCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCC--cEEEEEeCcCCCCEEEEEe--CCCE
Confidence 456899999987 4 344444 8899999997642 3445554443 46666677654 5788777 6899
Q ss_pred EEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCccc
Q 019349 161 VLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQD 240 (342)
Q Consensus 161 i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~ 240 (342)
|+|||+.+++.+..+.+|...|.+++|+|+|++|++++.|++ |++||+++++.+.++..+. ...+..+.|.+++.
T Consensus 150 VrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~-IrIwD~rsg~~v~tl~~H~-~~~~~~~~w~~~~~--- 224 (493)
T PTZ00421 150 VNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKK-LNIIDPRDGTIVSSVEAHA-SAKSQRCLWAKRKD--- 224 (493)
T ss_pred EEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCE-EEEEECCCCcEEEEEecCC-CCcceEEEEcCCCC---
Confidence 999999999999999999999999999999999999999997 5999999999888875432 23345678888877
Q ss_pred EEEEEe----CCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEEEEEE-eCCcEE
Q 019349 241 ILVATS----SSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVIT-YNGYFV 315 (342)
Q Consensus 241 ~l~~~s----~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~v~ 315 (342)
.|++++ .|++|++||++....+..... +. ..+......|+ ++.+.|++++ .||.|+
T Consensus 225 ~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~----~d-~~~~~~~~~~d--------------~d~~~L~lggkgDg~Ir 285 (493)
T PTZ00421 225 LIITLGCSKSQQRQIMLWDTRKMASPYSTVD----LD-QSSALFIPFFD--------------EDTNLLYIGSKGEGNIR 285 (493)
T ss_pred eEEEEecCCCCCCeEEEEeCCCCCCceeEec----cC-CCCceEEEEEc--------------CCCCEEEEEEeCCCeEE
Confidence 666654 478999999986543221000 00 00000011233 3347788877 599999
Q ss_pred EEEEecCC
Q 019349 316 EYIFSINN 323 (342)
Q Consensus 316 ~~~~~~~~ 323 (342)
+|++..++
T Consensus 286 iwdl~~~~ 293 (493)
T PTZ00421 286 CFELMNER 293 (493)
T ss_pred EEEeeCCc
Confidence 99987543
No 71
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=3.7e-23 Score=180.93 Aligned_cols=235 Identities=15% Similarity=0.220 Sum_probs=182.0
Q ss_pred CCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcE--EEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECC
Q 019349 7 SYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRL--CYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTT 83 (342)
Q Consensus 7 ~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~ 83 (342)
...|+++.|-+||++||+|.+.| ++|||..+... .+..+..++-.+.+.+..+.++..++ +|+.+++||+.
T Consensus 68 k~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~s------Dd~v~k~~d~s 141 (487)
T KOG0310|consen 68 KDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGS------DDKVVKYWDLS 141 (487)
T ss_pred ccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecC------CCceEEEEEcC
Confidence 45799999999999999999999 49999665322 23445677777888777777766655 58999999999
Q ss_pred CCcEEEEEe-cCCceEEEEEcCC--eEEEEE--CCeEEEEECCCC-ceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCC
Q 019349 84 TGTALRELN-FLTSILAVRLNKK--RLVIVL--REKTYIYDANTL-AILDTIDTVPNLKGLCAFSPSLNACFLAVPASTT 157 (342)
Q Consensus 84 ~~~~~~~~~-~~~~v~~i~~~~~--~~~~~~--d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 157 (342)
+.....++. +...|++.++++. ++++.+ |++|++||++.. ..+.++.. ..| +-.+.+-|.+..+|++|.
T Consensus 142 ~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnh-g~p--Ve~vl~lpsgs~iasAgG-- 216 (487)
T KOG0310|consen 142 TAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNH-GCP--VESVLALPSGSLIASAGG-- 216 (487)
T ss_pred CcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecC-CCc--eeeEEEcCCCCEEEEcCC--
Confidence 888654554 4458999999774 445444 999999999876 56666653 333 333333455679998873
Q ss_pred ccEEEEEEccCCc-eeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCC
Q 019349 158 KGSVLVYNVMELH-SHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSM 236 (342)
Q Consensus 158 ~g~i~iwd~~~~~-~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~ 236 (342)
..|+|||+.+|. .+.....|...|+|+++..+++.|++||-|+.+ |+||+.+-+.++.+. .+++|.+|+.+||+
T Consensus 217 -n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~V-KVfd~t~~Kvv~s~~---~~~pvLsiavs~dd 291 (487)
T KOG0310|consen 217 -NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHV-KVFDTTNYKVVHSWK---YPGPVLSIAVSPDD 291 (487)
T ss_pred -CeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccce-EEEEccceEEEEeee---cccceeeEEecCCC
Confidence 689999998655 444455599999999999999999999999984 999998888888874 46789999999999
Q ss_pred CcccEEEEEeCCCcEEEEecCCCC
Q 019349 237 QFQDILVATSSSGSLHVFSPGFAI 260 (342)
Q Consensus 237 ~~~~~l~~~s~dg~i~vwd~~~~~ 260 (342)
+ .++.|-.+|.+.+=+....+
T Consensus 292 ~---t~viGmsnGlv~~rr~~~k~ 312 (487)
T KOG0310|consen 292 Q---TVVIGMSNGLVSIRRREVKK 312 (487)
T ss_pred c---eEEEecccceeeeehhhccc
Confidence 8 99999999998877544433
No 72
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.92 E-value=2.4e-24 Score=178.81 Aligned_cols=224 Identities=15% Similarity=0.230 Sum_probs=172.8
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcEEEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEEC
Q 019349 4 QSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNT 82 (342)
Q Consensus 4 ~~~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~ 82 (342)
++|.+++++.+|||||.++|+|+.|. ++|.|++.. +.... + .+| ..++ .
T Consensus 109 t~HK~~cR~aafs~DG~lvATGsaD~SIKildverm--laks~--~---~em---------~~~~--------------~ 158 (430)
T KOG0640|consen 109 TSHKSPCRAAAFSPDGSLVATGSADASIKILDVERM--LAKSK--P---KEM---------ISGD--------------T 158 (430)
T ss_pred eecccceeeeeeCCCCcEEEccCCcceEEEeehhhh--hhhcc--h---hhh---------ccCC--------------c
Confidence 56888999999999999999999886 699997532 11000 0 011 1111 1
Q ss_pred CCC-cEEEE-EecCCceEEEEEcCCeEEEEE---CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCC
Q 019349 83 TTG-TALRE-LNFLTSILAVRLNKKRLVIVL---REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTT 157 (342)
Q Consensus 83 ~~~-~~~~~-~~~~~~v~~i~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 157 (342)
..+ -.+++ +.+..+|.++.|+|...++++ |++|++||+......+-++.......+.+++++|.|.+|+.+. .
T Consensus 159 qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgT--d 236 (430)
T KOG0640|consen 159 QARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGT--D 236 (430)
T ss_pred ccCCceEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEec--C
Confidence 111 22333 356679999999998766655 8999999997654333333334445677888888888998876 5
Q ss_pred ccEEEEEEccCCceeEEE---ecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEec
Q 019349 158 KGSVLVYNVMELHSHCEI---DAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQ 234 (342)
Q Consensus 158 ~g~i~iwd~~~~~~~~~~---~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~ 234 (342)
..++++||+.+.++...- ..|++.|+++.+|+.|++.+|||.||. ||+||--+++++.++...+..++|.+..|+.
T Consensus 237 Hp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~-IklwDGVS~rCv~t~~~AH~gsevcSa~Ftk 315 (430)
T KOG0640|consen 237 HPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGA-IKLWDGVSNRCVRTIGNAHGGSEVCSAVFTK 315 (430)
T ss_pred CCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCc-EEeeccccHHHHHHHHhhcCCceeeeEEEcc
Confidence 789999999999876443 479999999999999999999999997 6999999999999988777778899999999
Q ss_pred CCCcccEEEEEeCCCcEEEEecCCCCCCC
Q 019349 235 SMQFQDILVATSSSGSLHVFSPGFAINQR 263 (342)
Q Consensus 235 d~~~~~~l~~~s~dg~i~vwd~~~~~~~~ 263 (342)
+++ |+++.+.|.++++|++.++...+
T Consensus 316 n~k---yiLsSG~DS~vkLWEi~t~R~l~ 341 (430)
T KOG0640|consen 316 NGK---YILSSGKDSTVKLWEISTGRMLK 341 (430)
T ss_pred CCe---EEeecCCcceeeeeeecCCceEE
Confidence 999 99999999999999999887654
No 73
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.92 E-value=3e-23 Score=171.63 Aligned_cols=230 Identities=15% Similarity=0.168 Sum_probs=178.6
Q ss_pred CCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcEE-EEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEE
Q 019349 3 NQSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLC-YERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLF 80 (342)
Q Consensus 3 ~~~~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iw 80 (342)
+..++++|.+++|+.||+.+++|+-|+ +++||+.+++.. ...|.+++..+.|....++-.++.| +.|++|+.|
T Consensus 68 ~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TG-----SWDKTlKfW 142 (347)
T KOG0647|consen 68 QQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTG-----SWDKTLKFW 142 (347)
T ss_pred hhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCeeeeeecccceeEEEEecCCCcceeEec-----ccccceeec
Confidence 456889999999999999988876665 799999999654 5567788988888887776666666 479999999
Q ss_pred ECCCCcEEEEEecCCceEEEEEcCCeEEEEE-CCeEEEEECCCCcee-eEEeCCCCCceEEEEeeCCCccEEEEeCCCCc
Q 019349 81 NTTTGTALRELNFLTSILAVRLNKKRLVIVL-REKTYIYDANTLAIL-DTIDTVPNLKGLCAFSPSLNACFLAVPASTTK 158 (342)
Q Consensus 81 d~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~-d~~i~i~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 158 (342)
|.+...++.+++++..++++.+-..-++++. ++.|.+|+++++... +.++.+-+ -.+-+++...++...|.++ ..
T Consensus 143 D~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk-~Q~R~va~f~d~~~~alGs--iE 219 (347)
T KOG0647|consen 143 DTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLK-WQTRCVACFQDKDGFALGS--IE 219 (347)
T ss_pred ccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCccc-ceeeEEEEEecCCceEeee--ec
Confidence 9999999999999999999999888777777 889999999776432 23322211 2233333333333445555 68
Q ss_pred cEEEEEEccCC--ceeEEEecccC---------CeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeE
Q 019349 159 GSVLVYNVMEL--HSHCEIDAHQA---------PLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTI 227 (342)
Q Consensus 159 g~i~iwd~~~~--~~~~~~~~h~~---------~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v 227 (342)
|.+.|..+..+ +.-.+|+.|.. +|++|+|+|.-..|+|++.||+. .+||-....++++... ++.+|
T Consensus 220 Grv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf-~FWDkdar~kLk~s~~--~~qpI 296 (347)
T KOG0647|consen 220 GRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTF-SFWDKDARTKLKTSET--HPQPI 296 (347)
T ss_pred ceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceE-EEecchhhhhhhccCc--CCCcc
Confidence 99999988776 44567788873 58999999999999999999985 6999988888877653 46679
Q ss_pred EEEEEecCCCcccEEEEEe
Q 019349 228 FSLSFGQSMQFQDILVATS 246 (342)
Q Consensus 228 ~~l~fs~d~~~~~~l~~~s 246 (342)
++.+|+.+|. ++|-+.
T Consensus 297 tcc~fn~~G~---ifaYA~ 312 (347)
T KOG0647|consen 297 TCCSFNRNGS---IFAYAL 312 (347)
T ss_pred ceeEecCCCC---EEEEEe
Confidence 9999999998 666543
No 74
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.92 E-value=7.6e-23 Score=173.16 Aligned_cols=278 Identities=13% Similarity=0.104 Sum_probs=197.9
Q ss_pred CCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcEEEEE--eeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEE
Q 019349 3 NQSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYER--AVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCL 79 (342)
Q Consensus 3 ~~~~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~i 79 (342)
.+.|...|.++.||.||.+||+|.-+| ++||...++...... ....+..+.|.+....+ ++|. .|+.+-+
T Consensus 102 ltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~il-lAG~------~DGsvWm 174 (399)
T KOG0296|consen 102 LTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHIL-LAGS------TDGSVWM 174 (399)
T ss_pred ecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEE-Eeec------CCCcEEE
Confidence 568899999999999999999998888 599999999766555 44667777777644444 4443 5999999
Q ss_pred EECCCCcEEEEEe-cCCceEEEEEcCCe--EEEEE-CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCC
Q 019349 80 FNTTTGTALRELN-FLTSILAVRLNKKR--LVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPAS 155 (342)
Q Consensus 80 wd~~~~~~~~~~~-~~~~v~~i~~~~~~--~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 155 (342)
|.+.++.....+. +..++.+=.|.|++ ++.+. |++|++||..+++++..+.... .....+++.+..+..+..+.
T Consensus 175 w~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e-~~~~~~~~~~~~~~~~~~g~- 252 (399)
T KOG0296|consen 175 WQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAE-GLELPCISLNLAGSTLTKGN- 252 (399)
T ss_pred EECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccc-cCcCCccccccccceeEecc-
Confidence 9998865444444 44577777777764 33333 8899999999999998885332 22233445555555555544
Q ss_pred CCccEEEEEEccCCceeEEEe--------cccCCeeEEEEC---CCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCc
Q 019349 156 TTKGSVLVYNVMELHSHCEID--------AHQAPLAAIVLS---SNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYP 224 (342)
Q Consensus 156 ~~~g~i~iwd~~~~~~~~~~~--------~h~~~v~~i~~s---~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~ 224 (342)
.++.+.+-...+++.+.... .|...+.||.+. ..-.+.|+|+-||++ -|||+...+..+.+. ++
T Consensus 253 -~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i-~iyD~a~~~~R~~c~---he 327 (399)
T KOG0296|consen 253 -SEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTI-AIYDLAASTLRHICE---HE 327 (399)
T ss_pred -CCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceE-EEEecccchhheecc---CC
Confidence 57778887777777665443 455555565554 455789999999996 599998776555442 34
Q ss_pred eeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccE
Q 019349 225 STIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRAS 304 (342)
Q Consensus 225 ~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (342)
..|..+-|-+ .. +|++++.+|.|+.||.+++...- ...+|...+..++..++.+.
T Consensus 328 ~~V~~l~w~~-t~---~l~t~c~~g~v~~wDaRtG~l~~---------------------~y~GH~~~Il~f~ls~~~~~ 382 (399)
T KOG0296|consen 328 DGVTKLKWLN-TD---YLLTACANGKVRQWDARTGQLKF---------------------TYTGHQMGILDFALSPQKRL 382 (399)
T ss_pred CceEEEEEcC-cc---hheeeccCceEEeeeccccceEE---------------------EEecCchheeEEEEcCCCcE
Confidence 4599999988 44 89999999999999999876522 11122222233334556689
Q ss_pred EEEEEeCCcEEEEEE
Q 019349 305 VSVITYNGYFVEYIF 319 (342)
Q Consensus 305 l~~~~~dg~v~~~~~ 319 (342)
++++|.|+..++|..
T Consensus 383 vvT~s~D~~a~VF~v 397 (399)
T KOG0296|consen 383 VVTVSDDNTALVFEV 397 (399)
T ss_pred EEEecCCCeEEEEec
Confidence 999999999999964
No 75
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.92 E-value=1.5e-22 Score=164.39 Aligned_cols=235 Identities=16% Similarity=0.239 Sum_probs=191.9
Q ss_pred CCCCCCeEEEEEcCCC-CEEEEE-cCCcEEEEeCCCCcEEEEEee-CCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEE
Q 019349 4 QSSSYPVFFVSFNQDN-SGFALS-TKDGFKIFDSSTGRLCYERAV-GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLF 80 (342)
Q Consensus 4 ~~~~~~V~~l~fs~d~-~~la~g-~~~g~~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iw 80 (342)
.++.+.|-.++|+|.. .+|+++ +++.+++||..+++.+..... +.--.+.+.++++++++.+. |..|...
T Consensus 61 ~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~k-------dD~it~i 133 (313)
T KOG1407|consen 61 RGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGENINITWSPDGEYIAVGNK-------DDRITFI 133 (313)
T ss_pred cCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcceEEEEcCCCCEEEEecC-------cccEEEE
Confidence 4567788889999855 456655 455689999999987765543 33345677788888877664 8899999
Q ss_pred ECCCCcEEEEEecCCceEEEEEcCC-eEEEEE--CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCC
Q 019349 81 NTTTGTALRELNFLTSILAVRLNKK-RLVIVL--REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTT 157 (342)
Q Consensus 81 d~~~~~~~~~~~~~~~v~~i~~~~~-~~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 157 (342)
|.++.+...+.++...+..+.|+.+ .+++.. -|.|.|......+.+.+++.|+ ....|+.++|+++++|+++ .
T Consensus 134 d~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~--snCicI~f~p~GryfA~Gs--A 209 (313)
T KOG1407|consen 134 DARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHP--SNCICIEFDPDGRYFATGS--A 209 (313)
T ss_pred EecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCC--cceEEEEECCCCceEeecc--c
Confidence 9999999888888888888888543 344444 4799999999999999998765 5788999999999999988 6
Q ss_pred ccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCC
Q 019349 158 KGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQ 237 (342)
Q Consensus 158 ~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~ 237 (342)
|-.+.+||+...-+++.+..|.-||..|.||.||++||+||+|- .|-|=++++|..+.+++ ..++.+.++|+|...
T Consensus 210 DAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh-~IDIA~vetGd~~~eI~---~~~~t~tVAWHPk~~ 285 (313)
T KOG1407|consen 210 DALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDH-FIDIAEVETGDRVWEIP---CEGPTFTVAWHPKRP 285 (313)
T ss_pred cceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccc-eEEeEecccCCeEEEee---ccCCceeEEecCCCc
Confidence 89999999999999999999999999999999999999999996 47899999999999884 356689999999998
Q ss_pred cccEEEEEeCC---------CcEEEEec
Q 019349 238 FQDILVATSSS---------GSLHVFSP 256 (342)
Q Consensus 238 ~~~~l~~~s~d---------g~i~vwd~ 256 (342)
+||-+++| |+|++|-+
T Consensus 286 ---LLAyA~ddk~~d~~reag~vKiFG~ 310 (313)
T KOG1407|consen 286 ---LLAYACDDKDGDSNREAGTVKIFGL 310 (313)
T ss_pred ---eeeEEecCCCCccccccceeEEecC
Confidence 88888765 45666654
No 76
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=6.6e-22 Score=161.48 Aligned_cols=232 Identities=14% Similarity=0.137 Sum_probs=172.6
Q ss_pred eeCCEEEEEEcCC-CCeEEEEcCCCCCCCCCCeEEEEECCCCcE---EEEE--ecCCceEEEEEcCCeEEEEE---CCeE
Q 019349 45 AVGAFSIVEMLYS-SSLLAIVGAGEQPSLSPRRLCLFNTTTGTA---LREL--NFLTSILAVRLNKKRLVIVL---REKT 115 (342)
Q Consensus 45 ~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~---~~~~--~~~~~v~~i~~~~~~~~~~~---d~~i 115 (342)
+.+.+-.+++.+. +..++.+|+ |+.|++|+...+.. ...+ .+...|++++++|.+.++++ |.++
T Consensus 13 h~~r~W~~awhp~~g~ilAscg~-------Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~ 85 (312)
T KOG0645|consen 13 HKDRVWSVAWHPGKGVILASCGT-------DKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATV 85 (312)
T ss_pred CCCcEEEEEeccCCceEEEeecC-------CceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceE
Confidence 3345666677665 445666654 99999999885332 2222 24458999999887665554 8999
Q ss_pred EEEECCCC--ceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCC---ceeEEEecccCCeeEEEECCC
Q 019349 116 YIYDANTL--AILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMEL---HSHCEIDAHQAPLAAIVLSSN 190 (342)
Q Consensus 116 ~i~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~---~~~~~~~~h~~~v~~i~~s~d 190 (342)
.||.-.++ +++..++.|.+. +-++++++++.+||+++ .|..|-||.+... ++...++.|...|..+.|+|.
T Consensus 86 ~Iw~k~~~efecv~~lEGHEnE--VK~Vaws~sG~~LATCS--RDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt 161 (312)
T KOG0645|consen 86 VIWKKEDGEFECVATLEGHENE--VKCVAWSASGNYLATCS--RDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPT 161 (312)
T ss_pred EEeecCCCceeEEeeeeccccc--eeEEEEcCCCCEEEEee--CCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCC
Confidence 99987654 677888887775 55666777788999999 5899999998744 467889999999999999999
Q ss_pred CCEEEEEeCCCcEEEEEEcCC---CeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCC
Q 019349 191 GMYIATASEQGTIIRVFLVSE---ATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGR 267 (342)
Q Consensus 191 g~~lat~s~dg~~irlwd~~~---~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~ 267 (342)
..+|+++|-|.+ ||+|+-.. -++..++.. +...|.+++|+|.|. .|+++++|++|+||.....-+..
T Consensus 162 ~dlL~S~SYDnT-Ik~~~~~~dddW~c~~tl~g--~~~TVW~~~F~~~G~---rl~s~sdD~tv~Iw~~~~~~~~~---- 231 (312)
T KOG0645|consen 162 EDLLFSCSYDNT-IKVYRDEDDDDWECVQTLDG--HENTVWSLAFDNIGS---RLVSCSDDGTVSIWRLYTDLSGM---- 231 (312)
T ss_pred cceeEEeccCCe-EEEEeecCCCCeeEEEEecC--ccceEEEEEecCCCc---eEEEecCCcceEeeeeccCcchh----
Confidence 999999999998 69998762 246667643 344799999999998 99999999999999855322100
Q ss_pred ccccccccccccccccccccccceeeeccCCCccccEEEEEEeCCcEEEEEEe
Q 019349 268 TSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFS 320 (342)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~~~ 320 (342)
+..+.....|. +..|+++++|+.|++|.-+
T Consensus 232 -------~sr~~Y~v~W~----------------~~~IaS~ggD~~i~lf~~s 261 (312)
T KOG0645|consen 232 -------HSRALYDVPWD----------------NGVIASGGGDDAIRLFKES 261 (312)
T ss_pred -------cccceEeeeec----------------ccceEeccCCCEEEEEEec
Confidence 00111112343 1579999999999999865
No 77
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=4.7e-23 Score=186.24 Aligned_cols=236 Identities=12% Similarity=0.121 Sum_probs=187.9
Q ss_pred CCCeEEEEEcCCCCEEEEEcCCcE-EEEeCCCCcEEEEEee---CCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEEC
Q 019349 7 SYPVFFVSFNQDNSGFALSTKDGF-KIFDSSTGRLCYERAV---GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNT 82 (342)
Q Consensus 7 ~~~V~~l~fs~d~~~la~g~~~g~-~v~d~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~ 82 (342)
+..|+++.|+++|++||+|..+|. .|||....+.+..... ..+..+++ + ..++..|. .++.|..+|+
T Consensus 217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW--~-~~~lssGs------r~~~I~~~dv 287 (484)
T KOG0305|consen 217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAW--N-SSVLSSGS------RDGKILNHDV 287 (484)
T ss_pred CCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEec--c-CceEEEec------CCCcEEEEEE
Confidence 678999999999999999999985 9999887765544433 34444444 3 34444444 4899999999
Q ss_pred CCCcEEEE-Ee-cCCceEEEEEcCCeEEEEE---CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCC
Q 019349 83 TTGTALRE-LN-FLTSILAVRLNKKRLVIVL---REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTT 157 (342)
Q Consensus 83 ~~~~~~~~-~~-~~~~v~~i~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 157 (342)
+..+.... +. +...|..++|+++....++ |+.+.|||.........+..|.......+++|.. ...||++|...
T Consensus 288 R~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q-~~lLAsGGGs~ 366 (484)
T KOG0305|consen 288 RISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQ-SGLLATGGGSA 366 (484)
T ss_pred ecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCc-cCceEEcCCCc
Confidence 98876655 44 4569999999999888877 8899999998888888887777765566666654 45888888889
Q ss_pred ccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEe--CCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecC
Q 019349 158 KGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATAS--EQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQS 235 (342)
Q Consensus 158 ~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s--~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d 235 (342)
|++|++||..+++.+..+.. .+.|.+|.|++..+.|+++- .++. |.||+..+.+++..+.. |...|..+++|||
T Consensus 367 D~~i~fwn~~~g~~i~~vdt-gsQVcsL~Wsk~~kEi~sthG~s~n~-i~lw~~ps~~~~~~l~g--H~~RVl~la~SPd 442 (484)
T KOG0305|consen 367 DRCIKFWNTNTGARIDSVDT-GSQVCSLIWSKKYKELLSTHGYSENQ-ITLWKYPSMKLVAELLG--HTSRVLYLALSPD 442 (484)
T ss_pred ccEEEEEEcCCCcEeccccc-CCceeeEEEcCCCCEEEEecCCCCCc-EEEEeccccceeeeecC--CcceeEEEEECCC
Confidence 99999999999999887764 46799999999987777753 3444 57999999888888754 3566999999999
Q ss_pred CCcccEEEEEeCCCcEEEEecCCC
Q 019349 236 MQFQDILVATSSSGSLHVFSPGFA 259 (342)
Q Consensus 236 ~~~~~~l~~~s~dg~i~vwd~~~~ 259 (342)
+. .+++|+.|.++++|++-..
T Consensus 443 g~---~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 443 GE---TIVTGAADETLRFWNLFDE 463 (484)
T ss_pred CC---EEEEecccCcEEeccccCC
Confidence 99 9999999999999998664
No 78
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.92 E-value=3.6e-24 Score=181.03 Aligned_cols=278 Identities=12% Similarity=0.122 Sum_probs=205.3
Q ss_pred CCCCCCCeEEEEEcCCC-CEEEEEcCCc-EEEEeCCCCcEE--EEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEE
Q 019349 3 NQSSSYPVFFVSFNQDN-SGFALSTKDG-FKIFDSSTGRLC--YERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLC 78 (342)
Q Consensus 3 ~~~~~~~V~~l~fs~d~-~~la~g~~~g-~~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~ 78 (342)
+..|...|.|++=+|.. ..+++|+-|| +++||+.+...+ +..|.+-+.-+.+.. ..++.+|. |++|+
T Consensus 62 L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgd-------DKtvK 132 (433)
T KOG0268|consen 62 LDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGD-------DKTVK 132 (433)
T ss_pred ccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecC-------Cccee
Confidence 45788899999999987 6789998888 699999886554 344445565555544 55666664 89999
Q ss_pred EEECCCCcEEEEEecCCceEEEEEcCCeEEEEE-CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCcc-EEEEeCCC
Q 019349 79 LFNTTTGTALRELNFLTSILAVRLNKKRLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNAC-FLAVPAST 156 (342)
Q Consensus 79 iwd~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~ 156 (342)
.|.+.- .++.++-..+.+.+|..+...-..++ ...|.|||.+...++.++..... .+.++.++|... .|++++
T Consensus 133 ~wk~~~-~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~D--ti~svkfNpvETsILas~~-- 207 (433)
T KOG0268|consen 133 QWKIDG-PPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGAD--SISSVKFNPVETSILASCA-- 207 (433)
T ss_pred eeeccC-CcceeeeccccccccccccccccccccCceeeecccccCCccceeecCCC--ceeEEecCCCcchheeeec--
Confidence 999765 57778877788888888776666666 55999999988888888876554 466666666544 555555
Q ss_pred CccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCee-EEEeccCcCceeEEEEEEecC
Q 019349 157 TKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATK-SYSFRRGTYPSTIFSLSFGQS 235 (342)
Q Consensus 157 ~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~-~~~~~~~~~~~~v~~l~fs~d 235 (342)
.|+.|.+||+++..+++.+.- .-.-+.|+|+|++--+++|++|..+ ..+|++..+. +..+.. +...|.++.|||.
T Consensus 208 sDrsIvLyD~R~~~Pl~KVi~-~mRTN~IswnPeafnF~~a~ED~nl-Y~~DmR~l~~p~~v~~d--hvsAV~dVdfspt 283 (433)
T KOG0268|consen 208 SDRSIVLYDLRQASPLKKVIL-TMRTNTICWNPEAFNFVAANEDHNL-YTYDMRNLSRPLNVHKD--HVSAVMDVDFSPT 283 (433)
T ss_pred cCCceEEEecccCCccceeee-eccccceecCccccceeeccccccc-eehhhhhhcccchhhcc--cceeEEEeccCCC
Confidence 589999999999998766542 2345789999998889999999875 6999987653 333322 3456999999999
Q ss_pred CCcccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEEEEEEeCCcEE
Q 019349 236 MQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFV 315 (342)
Q Consensus 236 ~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~ 315 (342)
|+ -+++||-|.+|+||.++...... -+...-....+...|+.+. .+|++||.||.|+
T Consensus 284 G~---EfvsgsyDksIRIf~~~~~~SRd------iYhtkRMq~V~~Vk~S~Ds--------------kyi~SGSdd~nvR 340 (433)
T KOG0268|consen 284 GQ---EFVSGSYDKSIRIFPVNHGHSRD------IYHTKRMQHVFCVKYSMDS--------------KYIISGSDDGNVR 340 (433)
T ss_pred cc---hhccccccceEEEeecCCCcchh------hhhHhhhheeeEEEEeccc--------------cEEEecCCCccee
Confidence 99 89999999999999987654211 1111122233444566654 8999999999999
Q ss_pred EEEEec
Q 019349 316 EYIFSI 321 (342)
Q Consensus 316 ~~~~~~ 321 (342)
+|.-..
T Consensus 341 lWka~A 346 (433)
T KOG0268|consen 341 LWKAKA 346 (433)
T ss_pred eeecch
Confidence 997543
No 79
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.92 E-value=5.6e-23 Score=195.20 Aligned_cols=244 Identities=16% Similarity=0.172 Sum_probs=193.2
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEcCCcE-EEEeCCC----------C--------c--EEEEEeeCCEEEEEEcCCCCeEE
Q 019349 4 QSSSYPVFFVSFNQDNSGFALSTKDGF-KIFDSST----------G--------R--LCYERAVGAFSIVEMLYSSSLLA 62 (342)
Q Consensus 4 ~~~~~~V~~l~fs~d~~~la~g~~~g~-~v~d~~~----------~--------~--~~~~~~~~~~~~~~~~~~~~~~~ 62 (342)
..|.+.|+|+.|+|||++||+|++|.+ .||.... | + .++..|...+.-+.|.++..+++
T Consensus 66 ~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lv 145 (942)
T KOG0973|consen 66 DDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLV 145 (942)
T ss_pred ccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEE
Confidence 368899999999999999999999996 9998762 0 1 12334556677777777777777
Q ss_pred EEcCCCCCCCCCCeEEEEECCCCcEEEEEe-cCCceEEEEEcCCeEEEEE---CCeEEEEECCCCceeeEEeCCCCC---
Q 019349 63 IVGAGEQPSLSPRRLCLFNTTTGTALRELN-FLTSILAVRLNKKRLVIVL---REKTYIYDANTLAILDTIDTVPNL--- 135 (342)
Q Consensus 63 ~~~~g~~~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~i~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~--- 135 (342)
.++. |++|.|||.++.+.+..+. +.+.|.++.|+|-+.++|+ |++|+||++.+..+.+.+..+...
T Consensus 146 S~s~-------DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~ 218 (942)
T KOG0973|consen 146 SVSL-------DNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPL 218 (942)
T ss_pred Eecc-------cceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCC
Confidence 7765 9999999999998888776 5569999999998877777 779999999888777777655442
Q ss_pred -ceEEEEeeCCCccEEEEeCCC--CccEEEEEEccCCceeEEEecccCCeeEEEECCC-----CC------------EEE
Q 019349 136 -KGLCAFSPSLNACFLAVPAST--TKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSN-----GM------------YIA 195 (342)
Q Consensus 136 -~~~~~~~~~~~~~~l~~~~~~--~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~d-----g~------------~la 195 (342)
....-++++|||.+|+++... ...++.|.+-.+-+.-..|-+|..++.+++|+|. .. .+|
T Consensus 219 ~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~A 298 (942)
T KOG0973|consen 219 TTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAA 298 (942)
T ss_pred cceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEE
Confidence 235578899999999987532 2357888888777777889999999999999862 11 689
Q ss_pred EEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCC
Q 019349 196 TASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFA 259 (342)
Q Consensus 196 t~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~ 259 (342)
+||.|+++ -||.....+++..... .....|.+|+|+|||. .|.++|.||+|.++.++..
T Consensus 299 vgSqDrSl-SVW~T~~~RPl~vi~~-lf~~SI~DmsWspdG~---~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 299 VGSQDRSL-SVWNTALPRPLFVIHN-LFNKSIVDMSWSPDGF---SLFACSLDGTVALIHFEEK 357 (942)
T ss_pred EecCCccE-EEEecCCCCchhhhhh-hhcCceeeeeEcCCCC---eEEEEecCCeEEEEEcchH
Confidence 99999985 7999977776654421 2244699999999998 8999999999999998653
No 80
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.92 E-value=1e-22 Score=173.15 Aligned_cols=275 Identities=14% Similarity=0.066 Sum_probs=184.8
Q ss_pred CCCCeEEEEEcCCCCEEEEEcCCcE-EEEeCCCC-cEEEEEeeCCEEEEEEcC-CCC-eEEEEcCCCCCCCCCCeEEEEE
Q 019349 6 SSYPVFFVSFNQDNSGFALSTKDGF-KIFDSSTG-RLCYERAVGAFSIVEMLY-SSS-LLAIVGAGEQPSLSPRRLCLFN 81 (342)
Q Consensus 6 ~~~~V~~l~fs~d~~~la~g~~~g~-~v~d~~~~-~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~g~~~~~~d~~i~iwd 81 (342)
++.-|.++.-. +..+.+|+-||. |+||.... ..+...+.+.+..+.+.. +.. ..++.++ .|+++++|.
T Consensus 104 hdDWVSsv~~~--~~~IltgsYDg~~riWd~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas------~Dqtl~Lw~ 175 (423)
T KOG0313|consen 104 HDDWVSSVKGA--SKWILTGSYDGTSRIWDLKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSAS------MDQTLRLWK 175 (423)
T ss_pred chhhhhhhccc--CceEEEeecCCeeEEEecCCceEEEEecCCcceeeeEEEecCCccceEEEec------CCceEEEEE
Confidence 44445666555 678999998886 99997543 234455556666444432 222 2222222 599999999
Q ss_pred CCCCcEEEEE-----ecCCceEEEEEcCCeEEEEE---CCeEEEEECCC-------------------------CceeeE
Q 019349 82 TTTGTALREL-----NFLTSILAVRLNKKRLVIVL---REKTYIYDANT-------------------------LAILDT 128 (342)
Q Consensus 82 ~~~~~~~~~~-----~~~~~v~~i~~~~~~~~~~~---d~~i~i~d~~~-------------------------~~~~~~ 128 (342)
...++..... .|...|-++...++...+++ |..++||+..+ ..++-.
T Consensus 176 ~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vt 255 (423)
T KOG0313|consen 176 WNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVT 255 (423)
T ss_pred ecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEE
Confidence 9877644321 34568999998877665554 99999999421 112222
Q ss_pred EeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEE
Q 019349 129 IDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFL 208 (342)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd 208 (342)
+..|.. .+.++-+.+ ...+.+++ .|.+|+.||+.++..+.++.+ ..+++||.++|..++||+||.|.. |||||
T Consensus 256 l~GHt~--~Vs~V~w~d-~~v~yS~S--wDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~-irl~D 328 (423)
T KOG0313|consen 256 LEGHTE--PVSSVVWSD-ATVIYSVS--WDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRH-IRLWD 328 (423)
T ss_pred eccccc--ceeeEEEcC-CCceEeec--ccceEEEEEeecccceeeeec-CcceeEeecccccceeeecCCCCc-eeecC
Confidence 333333 344444444 33444554 899999999999999888876 467999999999999999999975 79999
Q ss_pred cCCCe--e-EEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCcccccccccccccccccc
Q 019349 209 VSEAT--K-SYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLD 285 (342)
Q Consensus 209 ~~~~~--~-~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (342)
.+++. . ...|. .|..-|.++.|+|.+.+ +|+++|.||++++||++..+.+.. -+.++-...+..-|.
T Consensus 329 PR~~~gs~v~~s~~--gH~nwVssvkwsp~~~~--~~~S~S~D~t~klWDvRS~k~ply------dI~~h~DKvl~vdW~ 398 (423)
T KOG0313|consen 329 PRTGDGSVVSQSLI--GHKNWVSSVKWSPTNEF--QLVSGSYDNTVKLWDVRSTKAPLY------DIAGHNDKVLSVDWN 398 (423)
T ss_pred CCCCCCceeEEeee--cchhhhhheecCCCCce--EEEEEecCCeEEEEEeccCCCcce------eeccCCceEEEEecc
Confidence 98764 2 23332 23456999999999884 999999999999999998763210 011111122222333
Q ss_pred ccccceeeeccCCCccccEEEEEEeCCcEEEEEEe
Q 019349 286 PADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFS 320 (342)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~~~ 320 (342)
- +..|++|+.|.++++|.-.
T Consensus 399 ~---------------~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 399 E---------------GGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred C---------------CceEEeccCcceEEEeccc
Confidence 2 2579999999999999643
No 81
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=2.3e-22 Score=167.62 Aligned_cols=282 Identities=16% Similarity=0.127 Sum_probs=185.7
Q ss_pred CCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcEE------EEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCC
Q 019349 3 NQSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLC------YERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPR 75 (342)
Q Consensus 3 ~~~~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~ 75 (342)
+-+|...|++++|+.||++||+.++|+ +|+|++..+... ...+.++-..+.+.++..-+++.-. ..+
T Consensus 82 LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~------~g~ 155 (420)
T KOG2096|consen 82 LKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVK------RGN 155 (420)
T ss_pred hhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEc------cCC
Confidence 346888999999999999999998887 599999876332 1122345566777777755443332 257
Q ss_pred eEEEEECCCCcE---EE------EEec----CCceEEEEEcCC--eEEEEE-CCeEEEEECCCCceeeEEeCCCCCceEE
Q 019349 76 RLCLFNTTTGTA---LR------ELNF----LTSILAVRLNKK--RLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLC 139 (342)
Q Consensus 76 ~i~iwd~~~~~~---~~------~~~~----~~~v~~i~~~~~--~~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~ 139 (342)
++++|.+.+.+. .. ...+ .-.+.++-.... .++.++ |.+|.+|++. |+.+..+++.......+
T Consensus 156 ~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~a 234 (420)
T KOG2096|consen 156 KLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDA 234 (420)
T ss_pred EEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeeccccccccce
Confidence 899998754321 10 0111 124444444443 445555 7799999999 89999987765555555
Q ss_pred EEeeCCCccEEEEeCCCCccEEEEEEcc---CC-----ceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCC
Q 019349 140 AFSPSLNACFLAVPASTTKGSVLVYNVM---EL-----HSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSE 211 (342)
Q Consensus 140 ~~~~~~~~~~l~~~~~~~~g~i~iwd~~---~~-----~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~ 211 (342)
+++ |+++++|++|.+ --|++|+.- .| ..+..+++|.+.|...+||++.+.++|.|.||+ +||||+.-
T Consensus 235 avS--P~GRFia~~gFT--pDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~-wriwdtdV 309 (420)
T KOG2096|consen 235 AVS--PDGRFIAVSGFT--PDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGK-WRIWDTDV 309 (420)
T ss_pred eeC--CCCcEEEEecCC--CCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCc-EEEeeccc
Confidence 554 678899999964 569999862 22 346778999999999999999999999999998 69999852
Q ss_pred C----e---eEEEeccC--cCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccc
Q 019349 212 A----T---KSYSFRRG--TYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNE 282 (342)
Q Consensus 212 ~----~---~~~~~~~~--~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (342)
. + .+++.... ...++-..|+++|+++ .|| .+...++++|..++++.....+.- +.......
T Consensus 310 rY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~---~lA-~s~gs~l~~~~se~g~~~~~~e~~------h~~~Is~i 379 (420)
T KOG2096|consen 310 RYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGD---SLA-VSFGSDLKVFASEDGKDYPELEDI------HSTTISSI 379 (420)
T ss_pred eEecCCCchHhhcCCcchhhcCCCceEEEeCCCCc---EEE-eecCCceEEEEcccCccchhHHHh------hcCceeeE
Confidence 2 2 22222111 1112344799999998 555 555668999999887654321110 00111122
Q ss_pred cccccccceeeeccCCCccccEEEEEEeCCcEEEEEEec
Q 019349 283 VLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSI 321 (342)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~~~~ 321 (342)
.|++++ . .++.|+|..++++.=.+
T Consensus 380 s~~~~g--------------~-~~atcGdr~vrv~~ntp 403 (420)
T KOG2096|consen 380 SYSSDG--------------K-YIATCGDRYVRVIRNTP 403 (420)
T ss_pred EecCCC--------------c-EEeeecceeeeeecCCC
Confidence 455544 4 44567788899886444
No 82
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=3e-21 Score=153.95 Aligned_cols=280 Identities=12% Similarity=0.143 Sum_probs=202.8
Q ss_pred CCCCeEEEEEcCCCCEEEEEcCC-cEEEEeC------CCC--------cEEEE---EeeCCEEEEEEcCCCCeEEEEcCC
Q 019349 6 SSYPVFFVSFNQDNSGFALSTKD-GFKIFDS------STG--------RLCYE---RAVGAFSIVEMLYSSSLLAIVGAG 67 (342)
Q Consensus 6 ~~~~V~~l~fs~d~~~la~g~~~-g~~v~d~------~~~--------~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g 67 (342)
..+.|++++|.|.|.+-|+|++. .+||.-. ..+ .++.. .+.+.+.+++|.+.+..+++.+
T Consensus 31 dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgs-- 108 (350)
T KOG0641|consen 31 DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGS-- 108 (350)
T ss_pred chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecC--
Confidence 35679999999999999999875 4788732 111 12222 2347888999988888887665
Q ss_pred CCCCCCCCeEEEEECCCC--cEE---EEE-ecCCceEEEEEcCC----eEEEEE----CCeEEEEECCCCceeeEEeCCC
Q 019349 68 EQPSLSPRRLCLFNTTTG--TAL---REL-NFLTSILAVRLNKK----RLVIVL----REKTYIYDANTLAILDTIDTVP 133 (342)
Q Consensus 68 ~~~~~~d~~i~iwd~~~~--~~~---~~~-~~~~~v~~i~~~~~----~~~~~~----d~~i~i~d~~~~~~~~~~~~~~ 133 (342)
+|++|++.-.... +.. .++ -+.+.|++++|-.+ ..++++ |.+|++-|...++.++.+..|.
T Consensus 109 -----ndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sght 183 (350)
T KOG0641|consen 109 -----NDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHT 183 (350)
T ss_pred -----CCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCc
Confidence 4899998655432 222 122 24568999998432 333333 6689999999998888886655
Q ss_pred CCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCceeEEEec--c-----cCCeeEEEECCCCCEEEEEeCCCcEEEE
Q 019349 134 NLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDA--H-----QAPLAAIVLSSNGMYIATASEQGTIIRV 206 (342)
Q Consensus 134 ~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~--h-----~~~v~~i~~s~dg~~lat~s~dg~~irl 206 (342)
.. .+.-++++ +.++++++ +|.+|+.||++-..++.++.. | .+.|.++++.|.|++|++|-.|... .+
T Consensus 184 gh-ilalyswn--~~m~~sgs--qdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc-~l 257 (350)
T KOG0641|consen 184 GH-ILALYSWN--GAMFASGS--QDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSC-ML 257 (350)
T ss_pred cc-EEEEEEec--CcEEEccC--CCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCce-EE
Confidence 42 22334454 44666554 799999999998888877642 2 3679999999999999999999886 59
Q ss_pred EEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccc
Q 019349 207 FLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDP 286 (342)
Q Consensus 207 wd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (342)
+|++.+..+..|.. +.+.|.|+.|||... ||+++|-|..|++-|+...-... -+.-.++.+..+.+.+.|+|
T Consensus 258 ydirg~r~iq~f~p--hsadir~vrfsp~a~---yllt~syd~~ikltdlqgdla~e---l~~~vv~ehkdk~i~~rwh~ 329 (350)
T KOG0641|consen 258 YDIRGGRMIQRFHP--HSADIRCVRFSPGAH---YLLTCSYDMKIKLTDLQGDLAHE---LPIMVVAEHKDKAIQCRWHP 329 (350)
T ss_pred EEeeCCceeeeeCC--CccceeEEEeCCCce---EEEEecccceEEEeecccchhhc---CceEEEEeccCceEEEEecC
Confidence 99999999998854 467799999999998 99999999999999997653211 11112233444566789999
Q ss_pred cccceeeeccCCCccccEEEEEEeCCcEEEEEEe
Q 019349 287 ADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFS 320 (342)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~~~ 320 (342)
.. -..++.+.|.++..|.++
T Consensus 330 ~d--------------~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 330 QD--------------FSFISSSADKTATLWALN 349 (350)
T ss_pred cc--------------ceeeeccCcceEEEeccC
Confidence 76 357788889999999764
No 83
>PTZ00420 coronin; Provisional
Probab=99.91 E-value=1.3e-21 Score=183.36 Aligned_cols=225 Identities=11% Similarity=0.098 Sum_probs=162.9
Q ss_pred CCCCCCeEEEEEcCC-CCEEEEEcCCc-EEEEeCCCCcE----------EEEEeeCCEEEEEEcCCCCeEEEEcCCCCCC
Q 019349 4 QSSSYPVFFVSFNQD-NSGFALSTKDG-FKIFDSSTGRL----------CYERAVGAFSIVEMLYSSSLLAIVGAGEQPS 71 (342)
Q Consensus 4 ~~~~~~V~~l~fs~d-~~~la~g~~~g-~~v~d~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 71 (342)
..|..+|.+++|+|+ +.+||+|+.|+ ++|||+.++.. .+..|...+..+.+.+....+++.++
T Consensus 71 ~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS----- 145 (568)
T PTZ00420 71 KGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSG----- 145 (568)
T ss_pred cCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEe-----
Confidence 467889999999997 78999999887 59999875421 22334567777888777665544433
Q ss_pred CCCCeEEEEECCCCcEEEEEecCCceEEEEEcCCeEEEEE---CCeEEEEECCCCceeeEEeCCCCCceEEEE---eeCC
Q 019349 72 LSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKRLVIVL---REKTYIYDANTLAILDTIDTVPNLKGLCAF---SPSL 145 (342)
Q Consensus 72 ~~d~~i~iwd~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~---~~~~ 145 (342)
.|++|++||+++++.+..+.++..|.++.|++++..+++ |+.|+|||+++++.+.++..|.......++ .+++
T Consensus 146 -~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~ 224 (568)
T PTZ00420 146 -FDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGG 224 (568)
T ss_pred -CCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcC
Confidence 489999999999998888877788999999887644433 789999999999998888877654333222 2346
Q ss_pred CccEEEEeCCCC--ccEEEEEEccC-CceeEEEe--cccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEecc
Q 019349 146 NACFLAVPASTT--KGSVLVYNVME-LHSHCEID--AHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRR 220 (342)
Q Consensus 146 ~~~~l~~~~~~~--~g~i~iwd~~~-~~~~~~~~--~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~ 220 (342)
++.+++++|.+. +++|+|||+++ .+++..+. .+.+.+...-..++|.++++|+.|++ ||+|++..+. +..+..
T Consensus 225 d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~t-Ir~~e~~~~~-~~~l~~ 302 (568)
T PTZ00420 225 DDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGN-CRYYQHSLGS-IRKVNE 302 (568)
T ss_pred CCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCe-EEEEEccCCc-EEeecc
Confidence 777888877421 24899999985 45555543 33344444444567999999999997 6999998764 344433
Q ss_pred CcCceeEEEEEEecCC
Q 019349 221 GTYPSTIFSLSFGQSM 236 (342)
Q Consensus 221 ~~~~~~v~~l~fs~d~ 236 (342)
.....++.+++|.|..
T Consensus 303 ~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 303 YKSCSPFRSFGFLPKQ 318 (568)
T ss_pred cccCCCccceEEcccc
Confidence 3334568889999975
No 84
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.91 E-value=1.2e-21 Score=162.20 Aligned_cols=239 Identities=13% Similarity=0.164 Sum_probs=175.0
Q ss_pred CCCCCCeEEEEEcC-CCCEEEEEcCCc-EEEEeCCC-CcEEEE---EeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeE
Q 019349 4 QSSSYPVFFVSFNQ-DNSGFALSTKDG-FKIFDSST-GRLCYE---RAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRL 77 (342)
Q Consensus 4 ~~~~~~V~~l~fs~-d~~~la~g~~~g-~~v~d~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i 77 (342)
++++..|.+|+||| ...+|++|+.|+ +|+|+++. +...-. .+.+++..++|..+++.+++.+. |+.+
T Consensus 24 ~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~-------Dk~~ 96 (347)
T KOG0647|consen 24 NPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGC-------DKQA 96 (347)
T ss_pred CCcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeecc-------CCce
Confidence 46778899999999 455566888887 79999876 343321 24478888889888877766654 9999
Q ss_pred EEEECCCCcEEEEEecCCceEEEEEcCCeE--EEEE---CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEE
Q 019349 78 CLFNTTTGTALRELNFLTSILAVRLNKKRL--VIVL---REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAV 152 (342)
Q Consensus 78 ~iwd~~~~~~~~~~~~~~~v~~i~~~~~~~--~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 152 (342)
++||+.+++....-.|..+|+.+.|-+... .+++ |+++++||.+....+.+++.+. .+.++..-.. +++.
T Consensus 97 k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPe---RvYa~Dv~~p--m~vV 171 (347)
T KOG0647|consen 97 KLWDLASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPE---RVYAADVLYP--MAVV 171 (347)
T ss_pred EEEEccCCCeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccc---eeeehhccCc--eeEE
Confidence 999999998777777888999999865433 3333 9999999999998888887643 3555544322 4444
Q ss_pred eCCCCccEEEEEEccCCceeEEEecc----cCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCC--eeEEEeccCcC---
Q 019349 153 PASTTKGSVLVYNVMELHSHCEIDAH----QAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEA--TKSYSFRRGTY--- 223 (342)
Q Consensus 153 ~~~~~~g~i~iwd~~~~~~~~~~~~h----~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~--~~~~~~~~~~~--- 223 (342)
+. .+..|.+|+++++... ++.+ +-.++||+.-+|....|.||-.|++ -+..+..+ +.-..|+-|..
T Consensus 172 at--a~r~i~vynL~n~~te--~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv-~iq~id~~~~~~nFtFkCHR~~~~ 246 (347)
T KOG0647|consen 172 AT--AERHIAVYNLENPPTE--FKRIESPLKWQTRCVACFQDKDGFALGSIEGRV-AIQYIDDPNPKDNFTFKCHRSTNS 246 (347)
T ss_pred Ee--cCCcEEEEEcCCCcch--hhhhcCcccceeeEEEEEecCCceEeeeecceE-EEEecCCCCccCceeEEEeccCCC
Confidence 43 3677999999876432 2223 3458899999998888999999986 58888776 33334432221
Q ss_pred ----ceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCC
Q 019349 224 ----PSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQ 262 (342)
Q Consensus 224 ----~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~ 262 (342)
--.|++|+|+|... .|++++.||++.+||-+...+.
T Consensus 247 ~~~~VYaVNsi~FhP~hg---tlvTaGsDGtf~FWDkdar~kL 286 (347)
T KOG0647|consen 247 VNDDVYAVNSIAFHPVHG---TLVTAGSDGTFSFWDKDARTKL 286 (347)
T ss_pred CCCceEEecceEeecccc---eEEEecCCceEEEecchhhhhh
Confidence 12488999999887 9999999999999997655443
No 85
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=3e-21 Score=153.97 Aligned_cols=239 Identities=14% Similarity=0.180 Sum_probs=181.8
Q ss_pred CCCCeEEEEEcCCCCEEEEEcCCc-EEEE--eCCCC-----cEEEEEeeCCEEEEEEcCCC----CeEEEEcCCCCCCCC
Q 019349 6 SSYPVFFVSFNQDNSGFALSTKDG-FKIF--DSSTG-----RLCYERAVGAFSIVEMLYSS----SLLAIVGAGEQPSLS 73 (342)
Q Consensus 6 ~~~~V~~l~fs~d~~~la~g~~~g-~~v~--d~~~~-----~~~~~~~~~~~~~~~~~~~~----~~~~~~~~g~~~~~~ 73 (342)
+.+.|+|.+|+|+|.+||+|++|. +++. |.++. .+.+..+.+.+.-++++-++ ..++..+. -
T Consensus 88 hkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~ga------g 161 (350)
T KOG0641|consen 88 HKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGA------G 161 (350)
T ss_pred cCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCC------C
Confidence 567899999999999999999876 5554 44332 45677777888777776443 23444444 3
Q ss_pred CCeEEEEECCCCcEEEEEec-CCceEEEE-EcCCeEEEEE-CCeEEEEECCCCceeeEEeCCCCC-----ceEEEEeeCC
Q 019349 74 PRRLCLFNTTTGTALRELNF-LTSILAVR-LNKKRLVIVL-REKTYIYDANTLAILDTIDTVPNL-----KGLCAFSPSL 145 (342)
Q Consensus 74 d~~i~iwd~~~~~~~~~~~~-~~~v~~i~-~~~~~~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~-----~~~~~~~~~~ 145 (342)
|-+|.+-|..+|+....+.. .+.|.++- |+.--++..+ |.+|++||++-..+++.+....+. ..+.+++.+|
T Consensus 162 dc~iy~tdc~~g~~~~a~sghtghilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdp 241 (350)
T KOG0641|consen 162 DCKIYITDCGRGQGFHALSGHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDP 241 (350)
T ss_pred cceEEEeecCCCCcceeecCCcccEEEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECC
Confidence 88899999999998887764 45777764 4443333333 789999999988888887544332 3467788888
Q ss_pred CccEEEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEe---ccCc
Q 019349 146 NACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSF---RRGT 222 (342)
Q Consensus 146 ~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~---~~~~ 222 (342)
.+.+|+++- .|....+||++.+.+++.+..|...|.|+.|||...+|+|+|-|.. ||+=|++ |.+.+++ .-+.
T Consensus 242 sgrll~sg~--~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~-ikltdlq-gdla~el~~~vv~e 317 (350)
T KOG0641|consen 242 SGRLLASGH--ADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMK-IKLTDLQ-GDLAHELPIMVVAE 317 (350)
T ss_pred Ccceeeecc--CCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccce-EEEeecc-cchhhcCceEEEEe
Confidence 898888765 6889999999999999999999999999999999999999999987 6999986 3332222 1223
Q ss_pred CceeEEEEEEecCCCcccEEEEEeCCCcEEEEecC
Q 019349 223 YPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPG 257 (342)
Q Consensus 223 ~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~ 257 (342)
+..++..+.|+|..- -+++.|.|.++.+|-+.
T Consensus 318 hkdk~i~~rwh~~d~---sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 318 HKDKAIQCRWHPQDF---SFISSSADKTATLWALN 349 (350)
T ss_pred ccCceEEEEecCccc---eeeeccCcceEEEeccC
Confidence 445577789999886 78899999999999764
No 86
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=5.2e-22 Score=165.31 Aligned_cols=280 Identities=13% Similarity=0.155 Sum_probs=201.1
Q ss_pred eEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcE--EEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCc
Q 019349 10 VFFVSFNQDNSGFALSTKDG-FKIFDSSTGRL--CYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGT 86 (342)
Q Consensus 10 V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~ 86 (342)
-.|+.||+-|.+||+|+.+| +.+||..+... .+..|..++..++|..++..+++.+. |+.|++||+..|.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~-------D~si~lwDl~~gs 98 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSR-------DWSIKLWDLLKGS 98 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecC-------CceeEEEeccCCC
Confidence 67999999999999999998 69999998854 35567788999999999999988876 9999999999999
Q ss_pred EEEEEecCCceEEEEEcCC--eEEEEE--CCeEEEEECCCCceeeEEeCCCCC-ceE--EEEeeCCCccEEEEeCCCCcc
Q 019349 87 ALRELNFLTSILAVRLNKK--RLVIVL--REKTYIYDANTLAILDTIDTVPNL-KGL--CAFSPSLNACFLAVPASTTKG 159 (342)
Q Consensus 87 ~~~~~~~~~~v~~i~~~~~--~~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~l~~~~~~~~g 159 (342)
++..+.++++|....++|. ..++++ +..-.+-++.+++. ..+...... ... ....+++.+.++.++. ..|
T Consensus 99 ~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h-~~Lp~d~d~dln~sas~~~fdr~g~yIitGt--sKG 175 (405)
T KOG1273|consen 99 PLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKH-SVLPKDDDGDLNSSASHGVFDRRGKYIITGT--SKG 175 (405)
T ss_pred ceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCce-eeccCCCccccccccccccccCCCCEEEEec--Ccc
Confidence 9999999999999999874 344444 66677777766321 122111111 011 1113456677888877 589
Q ss_pred EEEEEEccCCceeEEEeccc-CCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCe---------eEEEeccCcCceeEEE
Q 019349 160 SVLVYNVMELHSHCEIDAHQ-APLAAIVLSSNGMYIATASEQGTIIRVFLVSEAT---------KSYSFRRGTYPSTIFS 229 (342)
Q Consensus 160 ~i~iwd~~~~~~~~~~~~h~-~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~---------~~~~~~~~~~~~~v~~ 229 (342)
.+.++|..+.+++..++--. ..|..|.|+..|++|+..+.|. +||.++++.-- ..++++.-.......+
T Consensus 176 kllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDR-vIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ 254 (405)
T KOG1273|consen 176 KLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDR-VIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKK 254 (405)
T ss_pred eEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCc-eEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhh
Confidence 99999999999998887655 7899999999999999999996 68999986211 1122222122334678
Q ss_pred EEEecCCCcccEEEEEeCC-CcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEEEEE
Q 019349 230 LSFGQSMQFQDILVATSSS-GSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVI 308 (342)
Q Consensus 230 l~fs~d~~~~~~l~~~s~d-g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 308 (342)
++||.||. |+++++.. ..++||.-..+...+...... -......-|+|-. ..|++.
T Consensus 255 ccfs~dge---Yv~a~s~~aHaLYIWE~~~GsLVKILhG~k------gE~l~DV~whp~r--------------p~i~si 311 (405)
T KOG1273|consen 255 CCFSGDGE---YVCAGSARAHALYIWEKSIGSLVKILHGTK------GEELLDVNWHPVR--------------PIIASI 311 (405)
T ss_pred eeecCCcc---EEEeccccceeEEEEecCCcceeeeecCCc------hhheeecccccce--------------eeeeec
Confidence 89999999 88887754 469999877665544211100 0112233588765 345555
Q ss_pred EeCCcEEEEEEecCCC
Q 019349 309 TYNGYFVEYIFSINNC 324 (342)
Q Consensus 309 ~~dg~v~~~~~~~~~~ 324 (342)
..|.+++|.....+.
T Consensus 312 -~sg~v~iw~~~~~en 326 (405)
T KOG1273|consen 312 -ASGVVYIWAVVQVEN 326 (405)
T ss_pred -cCCceEEEEeecccc
Confidence 889999998765443
No 87
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.91 E-value=1.4e-22 Score=185.48 Aligned_cols=234 Identities=14% Similarity=0.190 Sum_probs=198.1
Q ss_pred CCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcEEEE--EeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCC
Q 019349 8 YPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYE--RAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTT 84 (342)
Q Consensus 8 ~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~ 84 (342)
..+.+..|-|.++++++|...| +.+||+.+..++.. .|.+.+-.++..++...++++++ |++|++||.+-
T Consensus 413 ~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~sa-------DktVkfWdf~l 485 (888)
T KOG0306|consen 413 GYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSA-------DKTVKFWDFKL 485 (888)
T ss_pred ccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecC-------CcEEEEEeEEE
Confidence 3688999999999999999998 79999988866533 45677888888888888888876 99999999641
Q ss_pred -----CcE--------EEEEecCCceEEEEEcCCeEEEEE---CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCcc
Q 019349 85 -----GTA--------LRELNFLTSILAVRLNKKRLVIVL---REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNAC 148 (342)
Q Consensus 85 -----~~~--------~~~~~~~~~v~~i~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (342)
|.. ..+++++..|.++.++|+.-+++. |++++||=+.+.+..-++-.|.- .+.++..+||..
T Consensus 486 ~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkL--PV~smDIS~DSk 563 (888)
T KOG0306|consen 486 VVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKL--PVLSMDISPDSK 563 (888)
T ss_pred EeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeeccccc--ceeEEeccCCcC
Confidence 111 145567789999999988655443 99999999999988777765544 577888888899
Q ss_pred EEEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEE
Q 019349 149 FLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIF 228 (342)
Q Consensus 149 ~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~ 228 (342)
.+++++ .|.+|+||-+.=|.|-.++-+|.+.|.++.|-|+..++.|+|.|+. +|-||-..-+++..+..+ ..+|+
T Consensus 564 livTgS--ADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~k-vKqWDg~kFe~iq~L~~H--~~ev~ 638 (888)
T KOG0306|consen 564 LIVTGS--ADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGK-VKQWDGEKFEEIQKLDGH--HSEVW 638 (888)
T ss_pred eEEecc--CCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcce-EEeechhhhhhheeeccc--hheee
Confidence 999988 6899999999999999999999999999999999999999999997 699999888888888654 56799
Q ss_pred EEEEecCCCcccEEEEEeCCCcEEEEecCC
Q 019349 229 SLSFGQSMQFQDILVATSSSGSLHVFSPGF 258 (342)
Q Consensus 229 ~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~ 258 (342)
|++.+|+|. +++++|.|.+|++|.-..
T Consensus 639 cLav~~~G~---~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 639 CLAVSPNGS---FVVSSSHDKSIRLWERTD 665 (888)
T ss_pred eeEEcCCCC---eEEeccCCceeEeeeccC
Confidence 999999999 999999999999998654
No 88
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=6e-23 Score=185.20 Aligned_cols=233 Identities=10% Similarity=0.173 Sum_probs=175.5
Q ss_pred EEEEc-CCCCEEEEEcCCcE-EEEeCCCCcEEE--------EEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEE
Q 019349 12 FVSFN-QDNSGFALSTKDGF-KIFDSSTGRLCY--------ERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFN 81 (342)
Q Consensus 12 ~l~fs-~d~~~la~g~~~g~-~v~d~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd 81 (342)
.+..+ |.+++|.+|+.||+ ++|+.....-.. +.|..-+.-+.....++.++.++ .|-+|++|+
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~S-------sDtTVK~W~ 101 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISAS-------SDTTVKVWN 101 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEec-------CCceEEEee
Confidence 34444 45667999999985 999875432211 11111122222233445555554 489999999
Q ss_pred CCCC--cEEEEEe-cCCceEEEEE-cCCeEEEEE---CCeEEEEECCCC--ceeeEEeC------C-CCCceEEEEeeCC
Q 019349 82 TTTG--TALRELN-FLTSILAVRL-NKKRLVIVL---REKTYIYDANTL--AILDTIDT------V-PNLKGLCAFSPSL 145 (342)
Q Consensus 82 ~~~~--~~~~~~~-~~~~v~~i~~-~~~~~~~~~---d~~i~i~d~~~~--~~~~~~~~------~-~~~~~~~~~~~~~ 145 (342)
...+ -++.++. |...|.+++. .++...+++ |+.|++||++++ +++.++.. . .....+.+++-++
T Consensus 102 ~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~ 181 (735)
T KOG0308|consen 102 AHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQ 181 (735)
T ss_pred cccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCC
Confidence 9776 3555554 4568999998 666666655 889999999987 34433321 1 2345688888888
Q ss_pred CccEEEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCce
Q 019349 146 NACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPS 225 (342)
Q Consensus 146 ~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~ 225 (342)
.+..++.+| ..+.+++||.++.+.+..+.+|...|.++..++||+.++++|.||+ ||+||+....++.++..+ ..
T Consensus 182 t~t~ivsGg--tek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgt-IrlWdLgqQrCl~T~~vH--~e 256 (735)
T KOG0308|consen 182 TGTIIVSGG--TEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGT-IRLWDLGQQRCLATYIVH--KE 256 (735)
T ss_pred cceEEEecC--cccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCce-EEeeeccccceeeeEEec--cC
Confidence 887777666 6899999999999999999999999999999999999999999997 699999999999998654 33
Q ss_pred eEEEEEEecCCCcccEEEEEeCCCcEEEEecCCC
Q 019349 226 TIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFA 259 (342)
Q Consensus 226 ~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~ 259 (342)
.|+++.-+|+-. .+.+|+.||.|..=|++.+
T Consensus 257 ~VWaL~~~~sf~---~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 257 GVWALQSSPSFT---HVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred ceEEEeeCCCcc---eEEecCCCCcEEecccCCc
Confidence 499999999988 9999999999999999875
No 89
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=1.9e-21 Score=161.55 Aligned_cols=243 Identities=15% Similarity=0.215 Sum_probs=176.1
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcEEEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEEC
Q 019349 4 QSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNT 82 (342)
Q Consensus 4 ~~~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~ 82 (342)
.++...|.++.|+|.++.|++++.|| +++|+.....+..... +..+++.+.|....-+++|+ .|+.|+.+|+
T Consensus 10 npP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d~~~~~~G~------~dg~vr~~Dl 82 (323)
T KOG1036|consen 10 NPPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFADESTIVTGG------LDGQVRRYDL 82 (323)
T ss_pred CCChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccCCceEEEec------cCceEEEEEe
Confidence 35678899999999999999999988 6999998775543332 23334455555545555555 5999999999
Q ss_pred CCCcEEEEEecCCceEEEEEcC--CeEEEEE-CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCcc
Q 019349 83 TTGTALRELNFLTSILAVRLNK--KRLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKG 159 (342)
Q Consensus 83 ~~~~~~~~~~~~~~v~~i~~~~--~~~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g 159 (342)
.++....--.+...|++|...+ +.++.++ |++|++||.+.......+.. +..+.+++..++ .|+++. .+.
T Consensus 83 n~~~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~---~kkVy~~~v~g~--~LvVg~--~~r 155 (323)
T KOG1036|consen 83 NTGNEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ---GKKVYCMDVSGN--RLVVGT--SDR 155 (323)
T ss_pred cCCcceeeccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccccccc---CceEEEEeccCC--EEEEee--cCc
Confidence 9988777777888999999874 3344444 99999999987655555543 346778877655 555555 478
Q ss_pred EEEEEEccCCceeEEE--ecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCC----eeEEEeccCcC-------cee
Q 019349 160 SVLVYNVMELHSHCEI--DAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEA----TKSYSFRRGTY-------PST 226 (342)
Q Consensus 160 ~i~iwd~~~~~~~~~~--~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~----~~~~~~~~~~~-------~~~ 226 (342)
.|.+||+++.....+. ..-+-.+.||++-|++.=.|.+|-||++ -+=.+... .+.+.|+-|.. -.+
T Consensus 156 ~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRV-avE~~d~s~~~~skkyaFkCHr~~~~~~~~~yP 234 (323)
T KOG1036|consen 156 KVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRV-AVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYP 234 (323)
T ss_pred eEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceE-EEEccCCchHHhhhceeEEeeecccCCceEEEE
Confidence 8999999987644322 2345678999999988889999999985 34444333 23344543211 125
Q ss_pred EEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCC
Q 019349 227 IFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRR 264 (342)
Q Consensus 227 v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~ 264 (342)
|++|+|+|-.. .||+|+.||.|.+||+...+..+.
T Consensus 235 VNai~Fhp~~~---tfaTgGsDG~V~~Wd~~~rKrl~q 269 (323)
T KOG1036|consen 235 VNAIAFHPIHG---TFATGGSDGIVNIWDLFNRKRLKQ 269 (323)
T ss_pred eceeEeccccc---eEEecCCCceEEEccCcchhhhhh
Confidence 99999999987 899999999999999987766543
No 90
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.90 E-value=1.2e-21 Score=166.64 Aligned_cols=234 Identities=15% Similarity=0.191 Sum_probs=176.3
Q ss_pred CCCCCCeEEEEEcCCC---CEEEEEcCC-cEEEEeCCCCcEE------EEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCC
Q 019349 4 QSSSYPVFFVSFNQDN---SGFALSTKD-GFKIFDSSTGRLC------YERAVGAFSIVEMLYSSSLLAIVGAGEQPSLS 73 (342)
Q Consensus 4 ~~~~~~V~~l~fs~d~---~~la~g~~~-g~~v~d~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 73 (342)
..+.++|.++++--.. ..|++++.| .+++|-++.++.. ...|...+..+....++..++..+ .
T Consensus 141 ~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS-------~ 213 (423)
T KOG0313|consen 141 VGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGS-------W 213 (423)
T ss_pred ecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeec-------c
Confidence 4678899977775322 247777666 4799988877432 225667777777777776665554 5
Q ss_pred CCeEEEEECCCC-------------------------cEEEEEe-cCCceEEEEEcCCeEEE-EE-CCeEEEEECCCCce
Q 019349 74 PRRLCLFNTTTG-------------------------TALRELN-FLTSILAVRLNKKRLVI-VL-REKTYIYDANTLAI 125 (342)
Q Consensus 74 d~~i~iwd~~~~-------------------------~~~~~~~-~~~~v~~i~~~~~~~~~-~~-d~~i~i~d~~~~~~ 125 (342)
|++|++|+..+. .++..+. |..+|.++.|.+...+. ++ |.+|+.||+.+++.
T Consensus 214 D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~ 293 (423)
T KOG0313|consen 214 DTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETGGL 293 (423)
T ss_pred cceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcCCCceEeecccceEEEEEeecccc
Confidence 999999993211 1222222 34578889887754433 44 99999999999988
Q ss_pred eeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCc---eeEEEecccCCeeEEEECCCC-CEEEEEeCCC
Q 019349 126 LDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELH---SHCEIDAHQAPLAAIVLSSNG-MYIATASEQG 201 (342)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~---~~~~~~~h~~~v~~i~~s~dg-~~lat~s~dg 201 (342)
.-++.+ +..+.+++..|...+||+++ .|..|++||.+++. ..+++.+|++.|.++.|+|.. .+|++||.|+
T Consensus 294 ~~~~~~---~ksl~~i~~~~~~~Ll~~gs--sdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~ 368 (423)
T KOG0313|consen 294 KSTLTT---NKSLNCISYSPLSKLLASGS--SDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDN 368 (423)
T ss_pred eeeeec---CcceeEeecccccceeeecC--CCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCC
Confidence 877754 34577888888888888777 58999999998764 457788999999999999954 6699999999
Q ss_pred cEEEEEEcCCCe-eEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEec
Q 019349 202 TIIRVFLVSEAT-KSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSP 256 (342)
Q Consensus 202 ~~irlwd~~~~~-~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~ 256 (342)
+ +|+||+++.+ .++.+.++ ..+|.++.|+..+ ++++|+.|++|+|+.-
T Consensus 369 t-~klWDvRS~k~plydI~~h--~DKvl~vdW~~~~----~IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 369 T-VKLWDVRSTKAPLYDIAGH--NDKVLSVDWNEGG----LIVSGGADNKLRIFKG 417 (423)
T ss_pred e-EEEEEeccCCCcceeeccC--CceEEEEeccCCc----eEEeccCcceEEEecc
Confidence 8 5999999887 88888654 6679999998654 7999999999999964
No 91
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=1.7e-22 Score=185.56 Aligned_cols=240 Identities=13% Similarity=0.164 Sum_probs=171.6
Q ss_pred CCCeEEEEEcCCCCEEEEEcCCcEEEEeCCCCc----EEEE-Eee--CCEEE--EEE-cCCCCeEEEEcCCCCCCCCCCe
Q 019349 7 SYPVFFVSFNQDNSGFALSTKDGFKIFDSSTGR----LCYE-RAV--GAFSI--VEM-LYSSSLLAIVGAGEQPSLSPRR 76 (342)
Q Consensus 7 ~~~V~~l~fs~d~~~la~g~~~g~~v~d~~~~~----~~~~-~~~--~~~~~--~~~-~~~~~~~~~~~~g~~~~~~d~~ 76 (342)
+...+.|+.+++-..+++++..-++||-+++.. +... ... ....+ |.| ....+++++++. .+.
T Consensus 39 k~~~nAIs~nr~~~qiv~AGrs~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~-------nG~ 111 (839)
T KOG0269|consen 39 KAKANAISVNRDINQIVVAGRSLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCST-------NGV 111 (839)
T ss_pred ccccceEeecCCcceeEEecccceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecC-------CCc
Confidence 346778899999999999988888999776541 1111 100 11111 222 234577888875 789
Q ss_pred EEEEECCC---CcEEEEEe-cCCceEEEEEcC---CeEEEEE-CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCcc
Q 019349 77 LCLFNTTT---GTALRELN-FLTSILAVRLNK---KRLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNAC 148 (342)
Q Consensus 77 i~iwd~~~---~~~~~~~~-~~~~v~~i~~~~---~~~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (342)
|.+||+.. .+.+..+. +.-.+..+.|+. +.++.++ |+.|++||++..+...++........-+.+++.++.
T Consensus 112 i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~- 190 (839)
T KOG0269|consen 112 ISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGN- 190 (839)
T ss_pred EEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCc-
Confidence 99999976 44444444 344889999865 3444444 899999999988777666553344445667776643
Q ss_pred EEEEeCCCCccEEEEEEccCCc-eeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCee--EEEeccCcCce
Q 019349 149 FLAVPASTTKGSVLVYNVMELH-SHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATK--SYSFRRGTYPS 225 (342)
Q Consensus 149 ~l~~~~~~~~g~i~iwd~~~~~-~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~--~~~~~~~~~~~ 225 (342)
.+++.. ..|.+++||++... +...+.+|.++|.|+.|+|++.+|||||.|++ |||||+.+.+. +.++. ..+
T Consensus 191 ~F~s~~--dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~-vkiWd~t~~~~~~~~tIn---Tia 264 (839)
T KOG0269|consen 191 KFASIH--DSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKM-VKIWDMTDSRAKPKHTIN---TIA 264 (839)
T ss_pred eEEEec--CCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCcc-EEEEeccCCCccceeEEe---ecc
Confidence 444443 58999999998764 57788899999999999999999999999987 69999976543 33332 246
Q ss_pred eEEEEEEecCCCcccEEEEEeC--CCcEEEEecCCCCCC
Q 019349 226 TIFSLSFGQSMQFQDILVATSS--SGSLHVFSPGFAINQ 262 (342)
Q Consensus 226 ~v~~l~fs~d~~~~~~l~~~s~--dg~i~vwd~~~~~~~ 262 (342)
+|.++.|-|+.. +.||+++. |-.|+|||++.+--+
T Consensus 265 pv~rVkWRP~~~--~hLAtcsmv~dtsV~VWDvrRPYIP 301 (839)
T KOG0269|consen 265 PVGRVKWRPARS--YHLATCSMVVDTSVHVWDVRRPYIP 301 (839)
T ss_pred eeeeeeeccCcc--chhhhhhccccceEEEEeecccccc
Confidence 799999999987 47887765 567999999987654
No 92
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.90 E-value=9.8e-22 Score=178.58 Aligned_cols=271 Identities=10% Similarity=0.167 Sum_probs=193.2
Q ss_pred CCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcEEE----EEeeCCEEE-EEEcCCCCeEEEEcCCCCCCCCCCe
Q 019349 3 NQSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCY----ERAVGAFSI-VEMLYSSSLLAIVGAGEQPSLSPRR 76 (342)
Q Consensus 3 ~~~~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~~~----~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~d~~ 76 (342)
...|.+.|..+++.+.. ++++++.|+ +++|+-...+.+. ..+.+-+.. ++.....+...++++ .|.+
T Consensus 10 l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~------~D~~ 82 (745)
T KOG0301|consen 10 LEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGG------MDTT 82 (745)
T ss_pred eccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeec------ccce
Confidence 34688889999988665 677777665 7999965443332 112222222 233332333344444 6999
Q ss_pred EEEEECCCCcEEEEEe-cCCceEEEEEcCCeEEEEE--CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEe
Q 019349 77 LCLFNTTTGTALRELN-FLTSILAVRLNKKRLVIVL--REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVP 153 (342)
Q Consensus 77 i~iwd~~~~~~~~~~~-~~~~v~~i~~~~~~~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 153 (342)
+.+|...+..++..+. |.+.|.++....+..++.+ |.++++|-... +...++. |...+.++..-|++ .++++
T Consensus 83 i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~~~~--l~~~l~g--H~asVWAv~~l~e~-~~vTg 157 (745)
T KOG0301|consen 83 IIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGTLISGSWDSTAKVWRIGE--LVYSLQG--HTASVWAVASLPEN-TYVTG 157 (745)
T ss_pred EEEEecCCCCchhhhhccccceeeeecCCcCceEecccccceEEecchh--hhcccCC--cchheeeeeecCCC-cEEec
Confidence 9999999999998875 5569999998777665544 99999998754 3334444 44467777777776 45555
Q ss_pred CCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEe
Q 019349 154 ASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFG 233 (342)
Q Consensus 154 ~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs 233 (342)
+ .|.+|++|.- ++.+++|.+|.+-|+.+++-+++ .+++++.||. ||+|++ +|+.+.++.. |...|++++..
T Consensus 158 s--aDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~-Ir~w~~-~ge~l~~~~g--htn~vYsis~~ 228 (745)
T KOG0301|consen 158 S--ADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGS-IRLWDL-DGEVLLEMHG--HTNFVYSISMA 228 (745)
T ss_pred c--CcceeeeccC--CchhhhhccchhheeeeEEecCC-CeEeecCCce-EEEEec-cCceeeeeec--cceEEEEEEec
Confidence 5 6899999986 66889999999999999998875 5889999996 699999 7888888753 45679999966
Q ss_pred cCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEEEEEEeCCc
Q 019349 234 QSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGY 313 (342)
Q Consensus 234 ~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~ 313 (342)
+++. .++++++|++++||+...-.. .+.....++|+... -.+.-|++||+||.
T Consensus 229 ~~~~---~Ivs~gEDrtlriW~~~e~~q-------------~I~lPttsiWsa~~-----------L~NgDIvvg~SDG~ 281 (745)
T KOG0301|consen 229 LSDG---LIVSTGEDRTLRIWKKDECVQ-------------VITLPTTSIWSAKV-----------LLNGDIVVGGSDGR 281 (745)
T ss_pred CCCC---eEEEecCCceEEEeecCceEE-------------EEecCccceEEEEE-----------eeCCCEEEeccCce
Confidence 6666 899999999999999762111 11112235777643 11246999999999
Q ss_pred EEEEEEec
Q 019349 314 FVEYIFSI 321 (342)
Q Consensus 314 v~~~~~~~ 321 (342)
||+|..+.
T Consensus 282 VrVfT~~k 289 (745)
T KOG0301|consen 282 VRVFTVDK 289 (745)
T ss_pred EEEEEecc
Confidence 99998763
No 93
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=5.2e-22 Score=160.74 Aligned_cols=237 Identities=13% Similarity=0.173 Sum_probs=171.4
Q ss_pred CCCCeEEEEEcCCCC-EEEEEcCCc-EEEEeCCCC-cE--EEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEE
Q 019349 6 SSYPVFFVSFNQDNS-GFALSTKDG-FKIFDSSTG-RL--CYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLF 80 (342)
Q Consensus 6 ~~~~V~~l~fs~d~~-~la~g~~~g-~~v~d~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iw 80 (342)
....+..++|++... .+++++.|| +++||+... .. .++.|...+..+.+....+...+.+. .|++||+|
T Consensus 59 ~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsS------WD~TiKLW 132 (311)
T KOG0277|consen 59 TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSS------WDGTIKLW 132 (311)
T ss_pred cccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeec------cCCceEee
Confidence 346788999998664 455565565 799995432 22 24445567777777665555555553 69999999
Q ss_pred ECCCCcEEEEEecC-CceEEEEEcCC---eEEEEE-CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCC-CccEEEEeC
Q 019349 81 NTTTGTALRELNFL-TSILAVRLNKK---RLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSL-NACFLAVPA 154 (342)
Q Consensus 81 d~~~~~~~~~~~~~-~~v~~i~~~~~---~~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~ 154 (342)
+...++.+.++..+ .-|....|+|. .+..++ |+.+++||++.......+..|.. .+.+..++. +...+++++
T Consensus 133 ~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~--Eil~cdw~ky~~~vl~Tg~ 210 (311)
T KOG0277|consen 133 DPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNS--EILCCDWSKYNHNVLATGG 210 (311)
T ss_pred cCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccc--eeEeecccccCCcEEEecC
Confidence 99999989887654 47889999774 344444 88999999986533334666553 344444443 445777776
Q ss_pred CCCccEEEEEEccCCc-eeEEEecccCCeeEEEECCC-CCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEE
Q 019349 155 STTKGSVLVYNVMELH-SHCEIDAHQAPLAAIVLSSN-GMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSF 232 (342)
Q Consensus 155 ~~~~g~i~iwd~~~~~-~~~~~~~h~~~v~~i~~s~d-g~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~f 232 (342)
.|+.|++||+++.+ ++..+.+|.-+|..|+|||- ...||++|-|-+ +|+||...+.-..+-.. +|..-+..+.|
T Consensus 211 --vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT-~riw~~~~~ds~~e~~~-~HtEFv~g~Dw 286 (311)
T KOG0277|consen 211 --VDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMT-VRIWDPERQDSAIETVD-HHTEFVCGLDW 286 (311)
T ss_pred --CCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccce-EEecccccchhhhhhhh-ccceEEecccc
Confidence 69999999998765 67888999999999999994 478999999987 59999985543322222 23445888999
Q ss_pred ecCCCcccEEEEEeCCCcEEEEec
Q 019349 233 GQSMQFQDILVATSSSGSLHVFSP 256 (342)
Q Consensus 233 s~d~~~~~~l~~~s~dg~i~vwd~ 256 (342)
|+-.. .++|+++.|+.++||+-
T Consensus 287 s~~~~--~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 287 SLFDP--GQVASTGWDELLYVWNP 308 (311)
T ss_pred ccccC--ceeeecccccceeeecc
Confidence 98654 29999999999999983
No 94
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.89 E-value=3.5e-21 Score=159.96 Aligned_cols=227 Identities=16% Similarity=0.184 Sum_probs=172.7
Q ss_pred CCCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcEE-EEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEEC
Q 019349 5 SSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLC-YERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNT 82 (342)
Q Consensus 5 ~~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~ 82 (342)
.+..++++++|.++.+ +++|+-+| ++++|++++... ...|..++.++...+..+.++..+ .|++|++||.
T Consensus 52 ~~~~plL~c~F~d~~~-~~~G~~dg~vr~~Dln~~~~~~igth~~~i~ci~~~~~~~~vIsgs-------WD~~ik~wD~ 123 (323)
T KOG1036|consen 52 KHGAPLLDCAFADEST-IVTGGLDGQVRRYDLNTGNEDQIGTHDEGIRCIEYSYEVGCVISGS-------WDKTIKFWDP 123 (323)
T ss_pred ecCCceeeeeccCCce-EEEeccCceEEEEEecCCcceeeccCCCceEEEEeeccCCeEEEcc-------cCccEEEEec
Confidence 4678999999998655 66666666 699999988543 334557777777766566654443 6999999999
Q ss_pred CCCcEEEEEecCCceEEEEEcCCeEEEEE-CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEE
Q 019349 83 TTGTALRELNFLTSILAVRLNKKRLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSV 161 (342)
Q Consensus 83 ~~~~~~~~~~~~~~v~~i~~~~~~~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i 161 (342)
++...+..+.....|.++....+.++++. +..+.+||+++.....+.....-...+-+++..|++.-.++++ .+|.|
T Consensus 124 R~~~~~~~~d~~kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sS--ieGRV 201 (323)
T KOG1036|consen 124 RNKVVVGTFDQGKKVYCMDVSGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSS--IEGRV 201 (323)
T ss_pred cccccccccccCceEEEEeccCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEe--ecceE
Confidence 98777888887889999999999999966 8899999999875544333222223344555555555555555 68999
Q ss_pred EEEEccCC----ceeEEEeccc---------CCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEE
Q 019349 162 LVYNVMEL----HSHCEIDAHQ---------APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIF 228 (342)
Q Consensus 162 ~iwd~~~~----~~~~~~~~h~---------~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~ 228 (342)
.+=.+... +....|++|. -||++|+|+|--..||||+.||.+ .+||+.+.+.+.++.+- +..|.
T Consensus 202 avE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V-~~Wd~~~rKrl~q~~~~--~~SI~ 278 (323)
T KOG1036|consen 202 AVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIV-NIWDLFNRKRLKQLAKY--ETSIS 278 (323)
T ss_pred EEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceE-EEccCcchhhhhhccCC--CCceE
Confidence 98766554 3345677775 379999999998999999999965 69999999998888532 45699
Q ss_pred EEEEecCCCcccEEEEEeC
Q 019349 229 SLSFGQSMQFQDILVATSS 247 (342)
Q Consensus 229 ~l~fs~d~~~~~~l~~~s~ 247 (342)
+++|+.||. .||.++.
T Consensus 279 slsfs~dG~---~LAia~s 294 (323)
T KOG1036|consen 279 SLSFSMDGS---LLAIASS 294 (323)
T ss_pred EEEeccCCC---eEEEEec
Confidence 999999999 9999875
No 95
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.89 E-value=7.8e-20 Score=161.61 Aligned_cols=237 Identities=14% Similarity=0.112 Sum_probs=168.5
Q ss_pred CCeEEEEEcCCCCEE-EEEcCCc-EEEEeCCCCcEEEEEee-CCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCC
Q 019349 8 YPVFFVSFNQDNSGF-ALSTKDG-FKIFDSSTGRLCYERAV-GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTT 84 (342)
Q Consensus 8 ~~V~~l~fs~d~~~l-a~g~~~g-~~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~ 84 (342)
..+.+++|+|+++.+ +++..++ +++||..+++....... .....+.+.++.+.+++.+. .++.|++||+++
T Consensus 31 ~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~------~~~~l~~~d~~~ 104 (300)
T TIGR03866 31 QRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPELFALHPNGKILYIANE------DDNLVTVIDIET 104 (300)
T ss_pred CCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCccEEEECCCCCEEEEEcC------CCCeEEEEECCC
Confidence 346789999999976 4555554 79999998876654332 23445566666676665554 478999999999
Q ss_pred CcEEEEEecCCceEEEEEcCCeEEEE--E-C-CeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccE
Q 019349 85 GTALRELNFLTSILAVRLNKKRLVIV--L-R-EKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGS 160 (342)
Q Consensus 85 ~~~~~~~~~~~~v~~i~~~~~~~~~~--~-d-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~ 160 (342)
++.+..+.....+.++.++++...++ . + ..+.+||..+++....+..... ...+++++++..+++++. .+|.
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~---~~~~~~s~dg~~l~~~~~-~~~~ 180 (300)
T TIGR03866 105 RKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQR---PRFAEFTADGKELWVSSE-IGGT 180 (300)
T ss_pred CeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCCC---ccEEEECCCCCEEEEEcC-CCCE
Confidence 88888777666678899988754333 3 3 3578889988877655543322 234566777777766553 5899
Q ss_pred EEEEEccCCceeEEEeccc-----C--CeeEEEECCCCCEEEEE-eCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEE
Q 019349 161 VLVYNVMELHSHCEIDAHQ-----A--PLAAIVLSSNGMYIATA-SEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSF 232 (342)
Q Consensus 161 i~iwd~~~~~~~~~~~~h~-----~--~v~~i~~s~dg~~lat~-s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~f 232 (342)
|.+||+.+++.+..+..+. . ....++|+|+|++++.+ +.+++ +.+||+++++.+..+..+ ..+.+++|
T Consensus 181 v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~-i~v~d~~~~~~~~~~~~~---~~~~~~~~ 256 (300)
T TIGR03866 181 VSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANR-VAVVDAKTYEVLDYLLVG---QRVWQLAF 256 (300)
T ss_pred EEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCe-EEEEECCCCcEEEEEEeC---CCcceEEE
Confidence 9999999988776664321 1 23468899999986554 44555 579999988877655322 34889999
Q ss_pred ecCCCcccEEEEE-eCCCcEEEEecCCCCC
Q 019349 233 GQSMQFQDILVAT-SSSGSLHVFSPGFAIN 261 (342)
Q Consensus 233 s~d~~~~~~l~~~-s~dg~i~vwd~~~~~~ 261 (342)
+|+++ +|+++ +.+|+|++||+++.+.
T Consensus 257 ~~~g~---~l~~~~~~~~~i~v~d~~~~~~ 283 (300)
T TIGR03866 257 TPDEK---YLLTTNGVSNDVSVIDVAALKV 283 (300)
T ss_pred CCCCC---EEEEEcCCCCeEEEEECCCCcE
Confidence 99999 88876 4689999999988764
No 96
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.89 E-value=1.6e-20 Score=178.62 Aligned_cols=286 Identities=15% Similarity=0.160 Sum_probs=208.6
Q ss_pred CCCeEEEEEcCCCCEEEEEc--CC-cEEEEeCCCCc------------E--EEEEeeCCEEEEEEcCCCCeEEEEcCCCC
Q 019349 7 SYPVFFVSFNQDNSGFALST--KD-GFKIFDSSTGR------------L--CYERAVGAFSIVEMLYSSSLLAIVGAGEQ 69 (342)
Q Consensus 7 ~~~V~~l~fs~d~~~la~g~--~~-g~~v~d~~~~~------------~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 69 (342)
+..|.+++.+|||..+|+|+ .| ++++|+.+.-- . ....|.+.+.++.|.+++.++|..+.
T Consensus 13 ~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSD--- 89 (942)
T KOG0973|consen 13 EKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSD--- 89 (942)
T ss_pred CeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccC---
Confidence 34699999999999999998 44 46899865431 1 12235578888999999999887664
Q ss_pred CCCCCCeEEEEECCC----------C--------cEEEEE-ecCCceEEEEEcCCeEEEEE---CCeEEEEECCCCceee
Q 019349 70 PSLSPRRLCLFNTTT----------G--------TALREL-NFLTSILAVRLNKKRLVIVL---REKTYIYDANTLAILD 127 (342)
Q Consensus 70 ~~~~d~~i~iwd~~~----------~--------~~~~~~-~~~~~v~~i~~~~~~~~~~~---d~~i~i~d~~~~~~~~ 127 (342)
|+.|.||+... | +++..+ .+.+.|.+++|+|+..++++ |++|.|||..+.+.+.
T Consensus 90 ----D~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~ 165 (942)
T KOG0973|consen 90 ----DRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLK 165 (942)
T ss_pred ----cceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeee
Confidence 89999999772 1 122223 24669999999998777666 9999999999998888
Q ss_pred EEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCceeEEEeccc------CCeeEEEECCCCCEEEEEeCC-
Q 019349 128 TIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQ------APLAAIVLSSNGMYIATASEQ- 200 (342)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~------~~v~~i~~s~dg~~lat~s~d- 200 (342)
.++.|.. .+-.++++|-|+++|+-+ .|++|+||++.+-...+.+.++- .-+.-+.|||||++|++.-.=
T Consensus 166 vl~~H~s--~VKGvs~DP~Gky~ASqs--dDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n 241 (942)
T KOG0973|consen 166 VLRGHQS--LVKGVSWDPIGKYFASQS--DDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVN 241 (942)
T ss_pred eeecccc--cccceEECCccCeeeeec--CCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhcc
Confidence 8887765 355677888899999998 69999999987766666665543 346789999999999997321
Q ss_pred --CcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecC------C--C-ccc-----EEEEEeCCCcEEEEecCCCCCCCC
Q 019349 201 --GTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQS------M--Q-FQD-----ILVATSSSGSLHVFSPGFAINQRR 264 (342)
Q Consensus 201 --g~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d------~--~-~~~-----~l~~~s~dg~i~vwd~~~~~~~~~ 264 (342)
+..+.|.+-.+.+.-..|-.| .+++.+++|+|. . . .++ .+|+||.|++|.||....+++.-.
T Consensus 242 ~~~~~~~IieR~tWk~~~~LvGH--~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~v 319 (942)
T KOG0973|consen 242 GGKSTIAIIERGTWKVDKDLVGH--SAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFV 319 (942)
T ss_pred CCcceeEEEecCCceeeeeeecC--CCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhh
Confidence 234567776666655666433 557999999982 1 1 001 689999999999999866655321
Q ss_pred CCCcccccccccccc-ccccccccccceeeeccCCCccccEEEEEEeCCcEEEEEEecCCCCe
Q 019349 265 GGRTSSILGSILPES-VNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSINNCCE 326 (342)
Q Consensus 265 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~~~~~~~~~ 326 (342)
. -.+.... ....|+|++ -.|+++|.||+|..+.+.+++-++
T Consensus 320 i-------~~lf~~SI~DmsWspdG--------------~~LfacS~DGtV~~i~Fee~ElG~ 361 (942)
T KOG0973|consen 320 I-------HNLFNKSIVDMSWSPDG--------------FSLFACSLDGTVALIHFEEKELGV 361 (942)
T ss_pred h-------hhhhcCceeeeeEcCCC--------------CeEEEEecCCeEEEEEcchHHhCc
Confidence 0 0011112 234788877 679999999999999998776553
No 97
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.89 E-value=2.3e-19 Score=158.53 Aligned_cols=267 Identities=10% Similarity=0.023 Sum_probs=177.5
Q ss_pred CEEEEEcCCc-EEEEeCCCCcEEEEEee-CCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEEEEEecCCce
Q 019349 20 SGFALSTKDG-FKIFDSSTGRLCYERAV-GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSI 97 (342)
Q Consensus 20 ~~la~g~~~g-~~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v 97 (342)
..+++++.++ +++||+.+++....... .....+.+.++...+++++. .++.|++||..+++.+..+.....+
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~~~~l~~~~dg~~l~~~~~------~~~~v~~~d~~~~~~~~~~~~~~~~ 75 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQRPRGITLSKDGKLLYVCAS------DSDTIQVIDLATGEVIGTLPSGPDP 75 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEECCCCCCceEECCCCCEEEEEEC------CCCeEEEEECCCCcEEEeccCCCCc
Confidence 4577777666 69999998876554432 22344566666666655554 4789999999999888777655556
Q ss_pred EEEEEcCCe--EEEEE--CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCceeE
Q 019349 98 LAVRLNKKR--LVIVL--REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHC 173 (342)
Q Consensus 98 ~~i~~~~~~--~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~ 173 (342)
..+.++++. ++++. ++.+++||+.+.+.+..+..... ...++++|++..++++.. ....+.+||..+++.+.
T Consensus 76 ~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~---~~~~~~~~dg~~l~~~~~-~~~~~~~~d~~~~~~~~ 151 (300)
T TIGR03866 76 ELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVE---PEGMAVSPDGKIVVNTSE-TTNMAHFIDTKTYEIVD 151 (300)
T ss_pred cEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCC---cceEEECCCCCEEEEEec-CCCeEEEEeCCCCeEEE
Confidence 778887764 33433 67999999998887777754322 344566778888887763 23467888998887765
Q ss_pred EEecccCCeeEEEECCCCCEEEEEe-CCCcEEEEEEcCCCeeEEEeccCc---C--ceeEEEEEEecCCCcccEEEE-Ee
Q 019349 174 EIDAHQAPLAAIVLSSNGMYIATAS-EQGTIIRVFLVSEATKSYSFRRGT---Y--PSTIFSLSFGQSMQFQDILVA-TS 246 (342)
Q Consensus 174 ~~~~h~~~v~~i~~s~dg~~lat~s-~dg~~irlwd~~~~~~~~~~~~~~---~--~~~v~~l~fs~d~~~~~~l~~-~s 246 (342)
.+... ..+.+++|+|+|++|+.++ .+|. +++||+.+++.+..+.... . ......++|+|+++ ++++ .+
T Consensus 152 ~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~-v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~---~~~~~~~ 226 (300)
T TIGR03866 152 NVLVD-QRPRFAEFTADGKELWVSSEIGGT-VSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGK---TAFVALG 226 (300)
T ss_pred EEEcC-CCccEEEECCCCCEEEEEcCCCCE-EEEEEcCcceeeeeeeecccccccccCCccceEECCCCC---EEEEEcC
Confidence 55433 3457899999999886554 5776 5899999998776653211 0 11245689999998 6544 45
Q ss_pred CCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEEEEEE-eCCcEEEEEEecCC
Q 019349 247 SSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVIT-YNGYFVEYIFSINN 323 (342)
Q Consensus 247 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~v~~~~~~~~~ 323 (342)
.+++|++||+++.+...... .+ .......| .+++..|++++ .+|.|++|++...+
T Consensus 227 ~~~~i~v~d~~~~~~~~~~~-----~~---~~~~~~~~--------------~~~g~~l~~~~~~~~~i~v~d~~~~~ 282 (300)
T TIGR03866 227 PANRVAVVDAKTYEVLDYLL-----VG---QRVWQLAF--------------TPDEKYLLTTNGVSNDVSVIDVAALK 282 (300)
T ss_pred CCCeEEEEECCCCcEEEEEE-----eC---CCcceEEE--------------CCCCCEEEEEcCCCCeEEEEECCCCc
Confidence 67789999987654321100 00 00111233 34447788764 59999999877633
No 98
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=8e-21 Score=176.41 Aligned_cols=246 Identities=11% Similarity=0.100 Sum_probs=177.4
Q ss_pred EeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCC--------------------------------Cc-----
Q 019349 44 RAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTT--------------------------------GT----- 86 (342)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~--------------------------------~~----- 86 (342)
.+.+.|-.+.+.+++.++|.+|- |+.|+||.+.. ..
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGe-------D~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s 337 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGE-------DGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTS 337 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCC-------CceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccc
Confidence 45677888888899999987764 99999999765 00
Q ss_pred -----------------------EEEEE-ecCCceEEEEEcCCeEEEEE--CCeEEEEECCCCceeeEEeCCCCCceEEE
Q 019349 87 -----------------------ALREL-NFLTSILAVRLNKKRLVIVL--REKTYIYDANTLAILDTIDTVPNLKGLCA 140 (342)
Q Consensus 87 -----------------------~~~~~-~~~~~v~~i~~~~~~~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~ 140 (342)
++..+ .|...|+++.|+++++++.+ |++|++|++....+++.|. ++..+.|
T Consensus 338 ~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~---HndfVTc 414 (712)
T KOG0283|consen 338 SSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFS---HNDFVTC 414 (712)
T ss_pred ccccccCCccccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCcceeeEEe---cCCeeEE
Confidence 00000 01236899999998877766 9999999999999998884 3456777
Q ss_pred EeeCC-CccEEEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEec
Q 019349 141 FSPSL-NACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFR 219 (342)
Q Consensus 141 ~~~~~-~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~ 219 (342)
++++| |..++++++ -||.|+||++...+.+.-...| .-|++++|.|||+..+.|+-+|.+ +++++...+....+.
T Consensus 415 VaFnPvDDryFiSGS--LD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~~G~C-~fY~t~~lk~~~~~~ 490 (712)
T KOG0283|consen 415 VAFNPVDDRYFISGS--LDGKVRLWSISDKKVVDWNDLR-DLITAVCYSPDGKGAVIGTFNGYC-RFYDTEGLKLVSDFH 490 (712)
T ss_pred EEecccCCCcEeecc--cccceEEeecCcCeeEeehhhh-hhheeEEeccCCceEEEEEeccEE-EEEEccCCeEEEeee
Confidence 77776 445666655 6999999999887765544444 779999999999999999999985 799998777655442
Q ss_pred cCcC------ceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceee
Q 019349 220 RGTY------PSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLR 293 (342)
Q Consensus 220 ~~~~------~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (342)
-..+ ..+|+.+.|.|... +.++++++|..|+|||.++.....+.+..... ..+....
T Consensus 491 I~~~~~Kk~~~~rITG~Q~~p~~~--~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~-----~SQ~~As---------- 553 (712)
T KOG0283|consen 491 IRLHNKKKKQGKRITGLQFFPGDP--DEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNT-----SSQISAS---------- 553 (712)
T ss_pred EeeccCccccCceeeeeEecCCCC--CeEEEecCCCceEEEeccchhhhhhhcccccC-----Ccceeee----------
Confidence 1111 22699999998665 36999999999999999766544332111110 0011111
Q ss_pred eccCCCccccEEEEEEeCCcEEEEEEecCCC
Q 019349 294 NAFPAGVKRASVSVITYNGYFVEYIFSINNC 324 (342)
Q Consensus 294 ~~~~~~~~~~~l~~~~~dg~v~~~~~~~~~~ 324 (342)
|..++++|+++|.|..||+|.++....
T Consensus 554 ----fs~Dgk~IVs~seDs~VYiW~~~~~~~ 580 (712)
T KOG0283|consen 554 ----FSSDGKHIVSASEDSWVYIWKNDSFNS 580 (712)
T ss_pred ----EccCCCEEEEeecCceEEEEeCCCCcc
Confidence 233558999999999999999866543
No 99
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.88 E-value=1.1e-20 Score=164.50 Aligned_cols=240 Identities=15% Similarity=0.223 Sum_probs=182.8
Q ss_pred CCCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcEE-E---E----------------EeeCCEEEEEEcCCCCeEEE
Q 019349 5 SSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLC-Y---E----------------RAVGAFSIVEMLYSSSLLAI 63 (342)
Q Consensus 5 ~~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~~-~---~----------------~~~~~~~~~~~~~~~~~~~~ 63 (342)
.|.-+|.|++++||+++..+++.++ +.-|++.+++.. + . .|...+..+++..++.++++
T Consensus 140 ~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylat 219 (479)
T KOG0299|consen 140 KHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLAT 219 (479)
T ss_pred cccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEe
Confidence 4566899999999999999998887 477988777522 1 0 12234555666777777776
Q ss_pred EcCCCCCCCCCCeEEEEECCCCcEEEEEe-cCCceEEEEEc--CCeEEEEE-CCeEEEEECCCCceeeEEeCCCCCceEE
Q 019349 64 VGAGEQPSLSPRRLCLFNTTTGTALRELN-FLTSILAVRLN--KKRLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLC 139 (342)
Q Consensus 64 ~~~g~~~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~i~~~--~~~~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~ 139 (342)
.+. |+.|.|||..+.+.+..+. +...|.+++|. ++.++.++ |..+++|++.....+.++-.| +..+.
T Consensus 220 gg~-------d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGH--qd~v~ 290 (479)
T KOG0299|consen 220 GGR-------DRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGH--QDGVL 290 (479)
T ss_pred cCC-------CceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCC--cccee
Confidence 664 8999999999999998865 45689999984 45666666 999999999988777776544 44677
Q ss_pred EEeeCCCccEEEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEec
Q 019349 140 AFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFR 219 (342)
Q Consensus 140 ~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~ 219 (342)
++....-++.+.+++ .|.++++|++.. +....+.+|.+.+-|++|-.+ ..++|||.+|. |.||++...+.+...+
T Consensus 291 ~IdaL~reR~vtVGg--rDrT~rlwKi~e-esqlifrg~~~sidcv~~In~-~HfvsGSdnG~-IaLWs~~KKkplf~~~ 365 (479)
T KOG0299|consen 291 GIDALSRERCVTVGG--RDRTVRLWKIPE-ESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGS-IALWSLLKKKPLFTSR 365 (479)
T ss_pred eechhcccceEEecc--ccceeEEEeccc-cceeeeeCCCCCeeeEEEecc-cceeeccCCce-EEEeeecccCceeEee
Confidence 666655555555555 589999999943 334457789999999999765 67999999998 5799999998887765
Q ss_pred cCcC--ce--------eEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCC
Q 019349 220 RGTY--PS--------TIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAIN 261 (342)
Q Consensus 220 ~~~~--~~--------~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~ 261 (342)
..+. +. -|++|+..|... ++|+||.+|.|++|.++.+..
T Consensus 366 ~AHgv~~~~~~~~~~~Witsla~i~~sd---L~asGS~~G~vrLW~i~~g~r 414 (479)
T KOG0299|consen 366 LAHGVIPELDPVNGNFWITSLAVIPGSD---LLASGSWSGCVRLWKIEDGLR 414 (479)
T ss_pred ccccccCCccccccccceeeeEecccCc---eEEecCCCCceEEEEecCCcc
Confidence 3321 11 488999999887 999999999999999987743
No 100
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=3.8e-21 Score=167.41 Aligned_cols=237 Identities=15% Similarity=0.239 Sum_probs=188.7
Q ss_pred CCCeEEEEEcCCCC-EEEEEcCCcE-EEEeCCCCcEEE-----EEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEE
Q 019349 7 SYPVFFVSFNQDNS-GFALSTKDGF-KIFDSSTGRLCY-----ERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCL 79 (342)
Q Consensus 7 ~~~V~~l~fs~d~~-~la~g~~~g~-~v~d~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~i 79 (342)
..||.+.+|.|+|. .+++++-.-+ ..||+.+.++.. ......+...++.+.++++++.|. .+.|.+
T Consensus 257 ~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~-------~G~I~l 329 (514)
T KOG2055|consen 257 KFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGN-------NGHIHL 329 (514)
T ss_pred cCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEccc-------CceEEe
Confidence 46899999999999 6777776654 999998886542 222244556677889999998875 799999
Q ss_pred EECCCCcEEEEEecCCceEEEEEcCCe-EEEEE--CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCC
Q 019349 80 FNTTTGTALRELNFLTSILAVRLNKKR-LVIVL--REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPAST 156 (342)
Q Consensus 80 wd~~~~~~~~~~~~~~~v~~i~~~~~~-~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 156 (342)
.-.++++.+.++..++.|.+++|+.+. .+++. +|.|++||++...+++.+..... ..-..++++.++.++|+++
T Consensus 330 LhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~-v~gts~~~S~ng~ylA~GS-- 406 (514)
T KOG2055|consen 330 LHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGS-VHGTSLCISLNGSYLATGS-- 406 (514)
T ss_pred ehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCc-cceeeeeecCCCceEEecc--
Confidence 999999999999999999999997653 22333 88999999999999988865433 3445667777888999887
Q ss_pred CccEEEEEEcc------CCceeEEEecccCCeeEEEECCCCCEEEEEeC--CCcEEEEEEcCCCeeEEEeccCc-CceeE
Q 019349 157 TKGSVLVYNVM------ELHSHCEIDAHQAPLAAIVLSSNGMYIATASE--QGTIIRVFLVSEATKSYSFRRGT-YPSTI 227 (342)
Q Consensus 157 ~~g~i~iwd~~------~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~--dg~~irlwd~~~~~~~~~~~~~~-~~~~v 227 (342)
..|.|.|||.. +.+++.++..-...|++|+|+||++.||.+|. +.. +|+-.+.+......|+... .-+.|
T Consensus 407 ~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~kna-lrLVHvPS~TVFsNfP~~n~~vg~v 485 (514)
T KOG2055|consen 407 DSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNA-LRLVHVPSCTVFSNFPTSNTKVGHV 485 (514)
T ss_pred CcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccc-eEEEeccceeeeccCCCCCCcccce
Confidence 68999999964 34567777667788999999999999999885 344 5899999888777775432 22459
Q ss_pred EEEEEecCCCcccEEEEEeCCCcEEEEecC
Q 019349 228 FSLSFGQSMQFQDILVATSSSGSLHVFSPG 257 (342)
Q Consensus 228 ~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~ 257 (342)
+||+|||.+. +||.|..+|.|++|.+.
T Consensus 486 tc~aFSP~sG---~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 486 TCMAFSPNSG---YLAVGNEAGRVHLFKLH 512 (514)
T ss_pred EEEEecCCCc---eEEeecCCCceeeEeec
Confidence 9999999998 99999999999999875
No 101
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.88 E-value=5.9e-21 Score=165.96 Aligned_cols=227 Identities=11% Similarity=0.203 Sum_probs=153.4
Q ss_pred CCCeEEEEECCCCcEEE----------EEe-cCCceEEEEEcCC---eEEEEE-CCeEEEEECCCCc-------eeeEEe
Q 019349 73 SPRRLCLFNTTTGTALR----------ELN-FLTSILAVRLNKK---RLVIVL-REKTYIYDANTLA-------ILDTID 130 (342)
Q Consensus 73 ~d~~i~iwd~~~~~~~~----------~~~-~~~~v~~i~~~~~---~~~~~~-d~~i~i~d~~~~~-------~~~~~~ 130 (342)
..+.+.|||..+..... .+. +...-.+++|++. .++.++ |++|.+||+.... ....+.
T Consensus 145 ~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~ 224 (422)
T KOG0264|consen 145 SSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFS 224 (422)
T ss_pred CCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEee
Confidence 47899999986532211 222 2234667888764 233333 7799999996432 123344
Q ss_pred CCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEcc--CCceeEEEecccCCeeEEEECC-CCCEEEEEeCCCcEEEEE
Q 019349 131 TVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVM--ELHSHCEIDAHQAPLAAIVLSS-NGMYIATASEQGTIIRVF 207 (342)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~--~~~~~~~~~~h~~~v~~i~~s~-dg~~lat~s~dg~~irlw 207 (342)
.|.....-+++.+.. ...+++++ .|+.+.|||++ +.++....++|.++|+|++|+| ++..|||||.|+++ +||
T Consensus 225 ~h~~~VeDV~~h~~h-~~lF~sv~--dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV-~Lw 300 (422)
T KOG0264|consen 225 GHEDVVEDVAWHPLH-EDLFGSVG--DDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTV-ALW 300 (422)
T ss_pred cCCcceehhhccccc-hhhheeec--CCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcE-EEe
Confidence 444444444555433 34566666 68999999999 5667778899999999999999 67889999999985 899
Q ss_pred EcCCCe-eEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCC----Cccc--c-cccccccc
Q 019349 208 LVSEAT-KSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGG----RTSS--I-LGSILPES 279 (342)
Q Consensus 208 d~~~~~-~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~----~~~~--~-~~~~~~~~ 279 (342)
|+++.. +++.+.. +...|.+|.|||... ..||+++.|+.+.|||+..-.+..+.+ .+-. | .+++....
T Consensus 301 DlRnL~~~lh~~e~--H~dev~~V~WSPh~e--tvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV 376 (422)
T KOG0264|consen 301 DLRNLNKPLHTFEG--HEDEVFQVEWSPHNE--TVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKV 376 (422)
T ss_pred echhcccCceeccC--CCcceEEEEeCCCCC--ceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCccccc
Confidence 999864 5666643 456799999999876 499999999999999997654332210 0001 0 12222222
Q ss_pred ccccccccccceeeeccCCCccccEEEEEEeCCcEEEEEEe
Q 019349 280 VNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFS 320 (342)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~~~ 320 (342)
..-.|+|... -.|+++..|+.++||++.
T Consensus 377 ~DfsWnp~eP-------------W~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 377 SDFSWNPNEP-------------WTIASVAEDNILQIWQMA 404 (422)
T ss_pred ccccCCCCCC-------------eEEEEecCCceEEEeecc
Confidence 2234555442 368899999999999986
No 102
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.88 E-value=1.5e-21 Score=165.30 Aligned_cols=237 Identities=14% Similarity=0.196 Sum_probs=176.3
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEcCCcEEEEeCCCCcEEEEEee-CCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEEC
Q 019349 4 QSSSYPVFFVSFNQDNSGFALSTKDGFKIFDSSTGRLCYERAV-GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNT 82 (342)
Q Consensus 4 ~~~~~~V~~l~fs~d~~~la~g~~~g~~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~ 82 (342)
..+.+.|..|+++. +..+.+|.++.++.|-++.. ....... ..+.-++.....+.++++| ..|.|||.
T Consensus 106 ~AH~G~V~Gi~v~~-~~~~tvgdDKtvK~wk~~~~-p~~tilg~s~~~gIdh~~~~~~FaTcG---------e~i~IWD~ 174 (433)
T KOG0268|consen 106 KAHEGLVRGICVTQ-TSFFTVGDDKTVKQWKIDGP-PLHTILGKSVYLGIDHHRKNSVFATCG---------EQIDIWDE 174 (433)
T ss_pred ecccCceeeEEecc-cceEEecCCcceeeeeccCC-cceeeeccccccccccccccccccccC---------ceeeeccc
Confidence 35778999999998 77788888889999987653 2222222 2222344444455565554 38999999
Q ss_pred CCCcEEEEEecCC-ceEEEEEcCCe---EEEE-ECCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCC
Q 019349 83 TTGTALRELNFLT-SILAVRLNKKR---LVIV-LREKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTT 157 (342)
Q Consensus 83 ~~~~~~~~~~~~~-~v~~i~~~~~~---~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 157 (342)
....++.++.... .|.++.++|.. +..+ +|+.|.+||++..++++.+...... ..++++|+. +.++++. .
T Consensus 175 ~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRT---N~IswnPea-fnF~~a~-E 249 (433)
T KOG0268|consen 175 QRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRT---NTICWNPEA-FNFVAAN-E 249 (433)
T ss_pred ccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeeccc---cceecCccc-cceeecc-c
Confidence 9999999888654 79999999864 2233 3899999999999888777543332 245677744 4444444 7
Q ss_pred ccEEEEEEccCCc-eeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCC
Q 019349 158 KGSVLVYNVMELH-SHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSM 236 (342)
Q Consensus 158 ~g~i~iwd~~~~~-~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~ 236 (342)
|..+..||++..+ ++....+|.++|..++|||.|+-+++||-|.+ ||||.++.+.--..+.. ..-..|.|+.||-|.
T Consensus 250 D~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDks-IRIf~~~~~~SRdiYht-kRMq~V~~Vk~S~Ds 327 (433)
T KOG0268|consen 250 DHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKS-IRIFPVNHGHSRDIYHT-KRMQHVFCVKYSMDS 327 (433)
T ss_pred cccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccce-EEEeecCCCcchhhhhH-hhhheeeEEEEeccc
Confidence 9999999998765 67778899999999999999999999999987 69999987753221111 112359999999999
Q ss_pred CcccEEEEEeCCCcEEEEecCCCCC
Q 019349 237 QFQDILVATSSSGSLHVFSPGFAIN 261 (342)
Q Consensus 237 ~~~~~l~~~s~dg~i~vwd~~~~~~ 261 (342)
+ |+++||+|+.|++|.....+.
T Consensus 328 k---yi~SGSdd~nvRlWka~Asek 349 (433)
T KOG0268|consen 328 K---YIISGSDDGNVRLWKAKASEK 349 (433)
T ss_pred c---EEEecCCCcceeeeecchhhh
Confidence 9 999999999999998766543
No 103
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=2.7e-19 Score=149.34 Aligned_cols=241 Identities=10% Similarity=0.089 Sum_probs=171.3
Q ss_pred eCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEEEEEecCC-ceEEEEE-cCCeEEEE-E---CCeEEEEE
Q 019349 46 VGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLT-SILAVRL-NKKRLVIV-L---REKTYIYD 119 (342)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~~~~~~-~v~~i~~-~~~~~~~~-~---d~~i~i~d 119 (342)
.+.+..+++..++..++.++ .|.+++|||..+++++.++.... .+..++| +.+..++. + |.+|+..+
T Consensus 14 ~~~i~sl~fs~~G~~litss-------~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLs 86 (311)
T KOG1446|consen 14 NGKINSLDFSDDGLLLITSS-------EDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLS 86 (311)
T ss_pred CCceeEEEecCCCCEEEEec-------CCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEE
Confidence 45677778777777877765 38899999999999999987654 4544555 33333333 3 77999999
Q ss_pred CCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeC
Q 019349 120 ANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASE 199 (342)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~ 199 (342)
+.+.+.++-+..|.....-.+++| -+..+.+++ .|++|++||++..++...+..-.. ..++|+|+|-.+|++..
T Consensus 87 l~dNkylRYF~GH~~~V~sL~~sP--~~d~FlS~S--~D~tvrLWDlR~~~cqg~l~~~~~--pi~AfDp~GLifA~~~~ 160 (311)
T KOG1446|consen 87 LHDNKYLRYFPGHKKRVNSLSVSP--KDDTFLSSS--LDKTVRLWDLRVKKCQGLLNLSGR--PIAAFDPEGLIFALANG 160 (311)
T ss_pred eecCceEEEcCCCCceEEEEEecC--CCCeEEecc--cCCeEEeeEecCCCCceEEecCCC--cceeECCCCcEEEEecC
Confidence 999999999988777544445554 444666666 689999999998888766654334 44899999999999987
Q ss_pred CCcEEEEEEcCCC--eeEEEeccC-cCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccc
Q 019349 200 QGTIIRVFLVSEA--TKSYSFRRG-TYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSIL 276 (342)
Q Consensus 200 dg~~irlwd~~~~--~~~~~~~~~-~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 276 (342)
.. .|+++|++.- .+...|... ....+...|.|||||+ +|+.++..+.+++.|.-++....+..... ...-+
T Consensus 161 ~~-~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK---~iLlsT~~s~~~~lDAf~G~~~~tfs~~~--~~~~~ 234 (311)
T KOG1446|consen 161 SE-LIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGK---SILLSTNASFIYLLDAFDGTVKSTFSGYP--NAGNL 234 (311)
T ss_pred CC-eEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCC---EEEEEeCCCcEEEEEccCCcEeeeEeecc--CCCCc
Confidence 76 5799999864 233444322 2345699999999999 99999999999999976665322100000 00001
Q ss_pred cccccccccccccceeeeccCCCccccEEEEEEeCCcEEEEEEec
Q 019349 277 PESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSI 321 (342)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~~~~ 321 (342)
| ..+. |.|+++.|++++.||++++|++..
T Consensus 235 ~--~~a~--------------ftPds~Fvl~gs~dg~i~vw~~~t 263 (311)
T KOG1446|consen 235 P--LSAT--------------FTPDSKFVLSGSDDGTIHVWNLET 263 (311)
T ss_pred c--eeEE--------------ECCCCcEEEEecCCCcEEEEEcCC
Confidence 1 1223 345558999999999999999843
No 104
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.88 E-value=2.4e-20 Score=161.33 Aligned_cols=235 Identities=12% Similarity=0.153 Sum_probs=177.4
Q ss_pred CCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEEEEEecCC-ceEEEEEcCCeEEEEE---CCeEEEEECCC
Q 019349 47 GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLT-SILAVRLNKKRLVIVL---REKTYIYDANT 122 (342)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~~~~~~-~v~~i~~~~~~~~~~~---d~~i~i~d~~~ 122 (342)
.++..+...+..+..+ .|| .|.++.++|...++.+..++.+. .|+++.++++...+.. |..|+||....
T Consensus 220 pgi~ald~~~s~~~il-TGG------~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~ 292 (506)
T KOG0289|consen 220 PGITALDIIPSSSKIL-TGG------EDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPL 292 (506)
T ss_pred CCeeEEeecCCCCcce-ecC------CCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeecccc
Confidence 4556666666644443 444 48899999999988888887554 8999999998766554 77999999877
Q ss_pred CceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCceeEEEec--ccCCeeEEEECCCCCEEEEEeCC
Q 019349 123 LAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDA--HQAPLAAIVLSSNGMYIATASEQ 200 (342)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~--h~~~v~~i~~s~dg~~lat~s~d 200 (342)
.........|.. .+..++.+|.+.|+..++ .||+.-..|++++..+..... ..-.+++.+|+|||..+++|..|
T Consensus 293 ~s~~~~~~~h~~--~V~~ls~h~tgeYllsAs--~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d 368 (506)
T KOG0289|consen 293 SSEPTSSRPHEE--PVTGLSLHPTGEYLLSAS--NDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPD 368 (506)
T ss_pred ccCccccccccc--cceeeeeccCCcEEEEec--CCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCC
Confidence 655555554444 466677777888999888 689999999999987755543 22358999999999999999999
Q ss_pred CcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccc
Q 019349 201 GTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESV 280 (342)
Q Consensus 201 g~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (342)
|. +++||+.++..+..|.. |.++|..++|+.+|. |||++++|+.|++||++..+..++..-...
T Consensus 369 ~~-vkiwdlks~~~~a~Fpg--ht~~vk~i~FsENGY---~Lat~add~~V~lwDLRKl~n~kt~~l~~~---------- 432 (506)
T KOG0289|consen 369 GV-VKIWDLKSQTNVAKFPG--HTGPVKAISFSENGY---WLATAADDGSVKLWDLRKLKNFKTIQLDEK---------- 432 (506)
T ss_pred ce-EEEEEcCCccccccCCC--CCCceeEEEeccCce---EEEEEecCCeEEEEEehhhcccceeecccc----------
Confidence 96 69999999999888864 577899999999999 999999999999999998776443111111
Q ss_pred cccccccccceeeeccCCCccccEEEEEEeCCcEEEEE
Q 019349 281 NEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYI 318 (342)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~ 318 (342)
..+..+.|.+-+.+|+.++.|=+||+|.
T Consensus 433 ----------~~v~s~~fD~SGt~L~~~g~~l~Vy~~~ 460 (506)
T KOG0289|consen 433 ----------KEVNSLSFDQSGTYLGIAGSDLQVYICK 460 (506)
T ss_pred ----------ccceeEEEcCCCCeEEeecceeEEEEEe
Confidence 0112233344557898888887777765
No 105
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=6.8e-20 Score=171.44 Aligned_cols=240 Identities=10% Similarity=0.134 Sum_probs=183.7
Q ss_pred CCCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCc-EEEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEEC
Q 019349 5 SSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGR-LCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNT 82 (342)
Q Consensus 5 ~~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~ 82 (342)
.|...-+.|+|.|+|..|++++.++ +++|+..+.. .-......+..+..+...++.++..+. +++|.++..
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~~f~~~s~-------~~tv~~y~f 83 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSNHFLTGSE-------QNTVLRYKF 83 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecccceEEeec-------cceEEEeeC
Confidence 3556788999999999998887777 6999876552 211122134445556666677766654 899999999
Q ss_pred CCCcEEEEE-ecCCceEEEEEcCCe--EEEEE-CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCc
Q 019349 83 TTGTALREL-NFLTSILAVRLNKKR--LVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTK 158 (342)
Q Consensus 83 ~~~~~~~~~-~~~~~v~~i~~~~~~--~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 158 (342)
..++.-.-+ .+.-+++.++++.++ ++.++ |-.|++-++.+......+..+.. .+.+++++|++.+||+.. .|
T Consensus 84 ps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~a--pVl~l~~~p~~~fLAvss--~d 159 (933)
T KOG1274|consen 84 PSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDA--PVLQLSYDPKGNFLAVSS--CD 159 (933)
T ss_pred CCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCC--ceeeeeEcCCCCEEEEEe--cC
Confidence 877654322 344567777777664 44444 44899999998877777776655 477888899999999988 58
Q ss_pred cEEEEEEccCCceeEEEec--------ccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEE
Q 019349 159 GSVLVYNVMELHSHCEIDA--------HQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSL 230 (342)
Q Consensus 159 g~i~iwd~~~~~~~~~~~~--------h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l 230 (342)
|.|++||+.++....++.+ ....+..++|+|+|..||..+.|+. |++++..+.+....++.......+..+
T Consensus 160 G~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~-Vkvy~r~~we~~f~Lr~~~~ss~~~~~ 238 (933)
T KOG1274|consen 160 GKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNT-VKVYSRKGWELQFKLRDKLSSSKFSDL 238 (933)
T ss_pred ceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCe-EEEEccCCceeheeecccccccceEEE
Confidence 9999999999877665542 1356778999999888888888887 589999999999998776656669999
Q ss_pred EEecCCCcccEEEEEeCCCcEEEEecCCC
Q 019349 231 SFGQSMQFQDILVATSSSGSLHVFSPGFA 259 (342)
Q Consensus 231 ~fs~d~~~~~~l~~~s~dg~i~vwd~~~~ 259 (342)
.|+|+|+ |||+++.||.|-|||+++.
T Consensus 239 ~wsPnG~---YiAAs~~~g~I~vWnv~t~ 264 (933)
T KOG1274|consen 239 QWSPNGK---YIAASTLDGQILVWNVDTH 264 (933)
T ss_pred EEcCCCc---EEeeeccCCcEEEEecccc
Confidence 9999999 9999999999999999973
No 106
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.87 E-value=4.6e-20 Score=152.48 Aligned_cols=200 Identities=14% Similarity=0.158 Sum_probs=150.7
Q ss_pred CCCCCCeEEEEEcC-CCCEEEEEcCCc-EEEEeCCCCc------EEE-------EE----eeCCEEEEEEcCCCCeEEEE
Q 019349 4 QSSSYPVFFVSFNQ-DNSGFALSTKDG-FKIFDSSTGR------LCY-------ER----AVGAFSIVEMLYSSSLLAIV 64 (342)
Q Consensus 4 ~~~~~~V~~l~fs~-d~~~la~g~~~g-~~v~d~~~~~------~~~-------~~----~~~~~~~~~~~~~~~~~~~~ 64 (342)
.+|.+.|+++...+ .|+++++|..|| +.|||++... ++. .. |.-.+..+.|.+-...+.+.
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 46888999999987 778899999888 5999987542 110 00 11123334444444555555
Q ss_pred cCCCCCCCCCCeEEEEECCCCcEEEEEecCCceEEEEEcCC----eEEEEE--CCeEEEEECCCCceeeEEeCCCCCceE
Q 019349 65 GAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRLNKK----RLVIVL--REKTYIYDANTLAILDTIDTVPNLKGL 138 (342)
Q Consensus 65 ~~g~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~i~~~~~----~~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~ 138 (342)
+. .|.++++||..+-+..-.+++++.|.+-+++|- -++.+. +-+|++-|+.++..-+.+..|. .++
T Consensus 120 sS------FDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr--~~v 191 (397)
T KOG4283|consen 120 SS------FDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHR--DGV 191 (397)
T ss_pred cc------ccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeecccc--Cce
Confidence 53 799999999999999999999999988877663 233333 5599999999999988887654 478
Q ss_pred EEEeeCCCccEEEEeCCCCccEEEEEEccCC-ceeE--------------EEecccCCeeEEEECCCCCEEEEEeCCCcE
Q 019349 139 CAFSPSLNACFLAVPASTTKGSVLVYNVMEL-HSHC--------------EIDAHQAPLAAIVLSSNGMYIATASEQGTI 203 (342)
Q Consensus 139 ~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~-~~~~--------------~~~~h~~~v~~i~~s~dg~~lat~s~dg~~ 203 (342)
.++.++|...++.+.|+ .||.|++||++.. .+.. +-.+|.+.|+.++|+.||.++++++.|.+
T Consensus 192 laV~Wsp~~e~vLatgs-aDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r- 269 (397)
T KOG4283|consen 192 LAVEWSPSSEWVLATGS-ADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDR- 269 (397)
T ss_pred EEEEeccCceeEEEecC-CCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccc-
Confidence 88888887777666665 7999999999754 2222 23468889999999999999999999988
Q ss_pred EEEEEcCCCe
Q 019349 204 IRVFLVSEAT 213 (342)
Q Consensus 204 irlwd~~~~~ 213 (342)
+|+|+..+|+
T Consensus 270 ~r~wn~~~G~ 279 (397)
T KOG4283|consen 270 IRVWNMESGR 279 (397)
T ss_pred eEEeecccCc
Confidence 5999998886
No 107
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.87 E-value=2.7e-20 Score=161.88 Aligned_cols=241 Identities=12% Similarity=0.148 Sum_probs=164.6
Q ss_pred CCCCCeEEEEEcCCCCEE-EEEcCCc-EEEEeCCCCc------------EEEEEeeCCEEEEEEcCCCCeEEEEcCCCCC
Q 019349 5 SSSYPVFFVSFNQDNSGF-ALSTKDG-FKIFDSSTGR------------LCYERAVGAFSIVEMLYSSSLLAIVGAGEQP 70 (342)
Q Consensus 5 ~~~~~V~~l~fs~d~~~l-a~g~~~g-~~v~d~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 70 (342)
.+++.|+.++.-|....+ |+++..+ +.|||..... +....|.+.-..+.|.......++.++
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~---- 197 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGS---- 197 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeecc----
Confidence 467889999999988665 5556555 7999965431 122233332222444444444444444
Q ss_pred CCCCCeEEEEECCCCcE-------EEEEe-cCCceEEEEEcCC---eEEEEE-CCeEEEEECCC--CceeeEEeCCCCCc
Q 019349 71 SLSPRRLCLFNTTTGTA-------LRELN-FLTSILAVRLNKK---RLVIVL-REKTYIYDANT--LAILDTIDTVPNLK 136 (342)
Q Consensus 71 ~~~d~~i~iwd~~~~~~-------~~~~~-~~~~v~~i~~~~~---~~~~~~-d~~i~i~d~~~--~~~~~~~~~~~~~~ 136 (342)
.|.+|++||+..... ...+. +...|.+++|++. .+..++ |+.+.|||+++ .+..+....|..+
T Consensus 198 --~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~- 274 (422)
T KOG0264|consen 198 --DDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAE- 274 (422)
T ss_pred --CCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCc-
Confidence 699999999864322 12222 3457888998653 344444 77999999995 4444555555554
Q ss_pred eEEEEeeCCC-ccEEEEeCCCCccEEEEEEccCCc-eeEEEecccCCeeEEEECCC-CCEEEEEeCCCcEEEEEEcCCCe
Q 019349 137 GLCAFSPSLN-ACFLAVPASTTKGSVLVYNVMELH-SHCEIDAHQAPLAAIVLSSN-GMYIATASEQGTIIRVFLVSEAT 213 (342)
Q Consensus 137 ~~~~~~~~~~-~~~l~~~~~~~~g~i~iwd~~~~~-~~~~~~~h~~~v~~i~~s~d-g~~lat~s~dg~~irlwd~~~~~ 213 (342)
+.+++++|- +..||+++ .|++|.+||+++.. ++.++.+|...|.+|.|||. ...||+++.|+++ .+||+..-.
T Consensus 275 -vn~~~fnp~~~~ilAT~S--~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl-~vWDls~ig 350 (422)
T KOG0264|consen 275 -VNCVAFNPFNEFILATGS--ADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRL-NVWDLSRIG 350 (422)
T ss_pred -eeEEEeCCCCCceEEecc--CCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcE-EEEeccccc
Confidence 555555553 44566665 69999999999864 67899999999999999995 4789999999996 699996432
Q ss_pred eEE------------EeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCC
Q 019349 214 KSY------------SFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGF 258 (342)
Q Consensus 214 ~~~------------~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~ 258 (342)
... -|.-+.|.+.|..+.|+|+..- .+++.++|+.++||+...
T Consensus 351 ~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW--~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 351 EEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPW--TIASVAEDNILQIWQMAE 405 (422)
T ss_pred cccChhhhccCCcceeEEecCcccccccccCCCCCCe--EEEEecCCceEEEeeccc
Confidence 211 1333445677999999999973 677889999999999763
No 108
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.87 E-value=8.4e-20 Score=149.00 Aligned_cols=241 Identities=12% Similarity=0.101 Sum_probs=179.4
Q ss_pred CCCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcEEEEEee-CCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEEC
Q 019349 5 SSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAV-GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNT 82 (342)
Q Consensus 5 ~~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~ 82 (342)
.|.+.|.|+..+.+.++|++|+.|. +++||+++|+.+..... ..+..+.+.+.+++.+.+....-+ ....|.++|+
T Consensus 50 GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg--~~~~v~~fdi 127 (327)
T KOG0643|consen 50 GHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMG--YTCFVSVFDI 127 (327)
T ss_pred CCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcC--cceEEEEEEc
Confidence 6788999999999999999998876 69999999999988765 567778898888888777642211 2567999998
Q ss_pred C-------CCcEEEEEecC-CceEEEEEcCCeE-EEEE--CCeEEEEECCCCcee-eEEeCCCCCceEEEEeeCCCccEE
Q 019349 83 T-------TGTALRELNFL-TSILAVRLNKKRL-VIVL--REKTYIYDANTLAIL-DTIDTVPNLKGLCAFSPSLNACFL 150 (342)
Q Consensus 83 ~-------~~~~~~~~~~~-~~v~~i~~~~~~~-~~~~--d~~i~i~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l 150 (342)
+ ..++...+..+ +.++.+-|.+-.- +++. ++.|.+||.++++.+ ...+.|. ..+..+.++++..++
T Consensus 128 ~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~--~~Ind~q~s~d~T~F 205 (327)
T KOG0643|consen 128 RDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHS--SKINDLQFSRDRTYF 205 (327)
T ss_pred cCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhc--cccccccccCCcceE
Confidence 7 34456666544 4788888877543 3333 789999999998544 4434333 367888889999999
Q ss_pred EEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEe-CCCcEEEEEEcCCCee------------EEE
Q 019349 151 AVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATAS-EQGTIIRVFLVSEATK------------SYS 217 (342)
Q Consensus 151 ~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s-~dg~~irlwd~~~~~~------------~~~ 217 (342)
++++ .|.+-++||+.+.+.+.++.. ..||++.+++|.-.+++-|+ .+..-+.-=+.+.|+. +..
T Consensus 206 iT~s--~Dttakl~D~~tl~v~Kty~t-e~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigr 282 (327)
T KOG0643|consen 206 ITGS--KDTTAKLVDVRTLEVLKTYTT-ERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGR 282 (327)
T ss_pred Eecc--cCccceeeeccceeeEEEeee-cccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhcc
Confidence 9887 689999999999999888864 67999999999766666554 4432222222233332 222
Q ss_pred eccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecC
Q 019349 218 FRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPG 257 (342)
Q Consensus 218 ~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~ 257 (342)
.+ .|-++|++++|+|+|+ ..++|++||.|++.-.+
T Consensus 283 vk--GHFGPINsvAfhPdGk---sYsSGGEDG~VR~h~Fd 317 (327)
T KOG0643|consen 283 VK--GHFGPINSVAFHPDGK---SYSSGGEDGYVRLHHFD 317 (327)
T ss_pred cc--ccccCcceeEECCCCc---ccccCCCCceEEEEEec
Confidence 22 2356799999999999 89999999999988654
No 109
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=3.2e-20 Score=161.90 Aligned_cols=270 Identities=11% Similarity=0.152 Sum_probs=192.7
Q ss_pred EEEEeCCCCcEEEEEeeCCEE---EEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEEE-EEecCCceEEEEEcCC
Q 019349 30 FKIFDSSTGRLCYERAVGAFS---IVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALR-ELNFLTSILAVRLNKK 105 (342)
Q Consensus 30 ~~v~d~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~-~~~~~~~v~~i~~~~~ 105 (342)
+.+||+.+|..+.....+... ...+ -...+++...- ....|.+|.+.+..... .+-.+++|.++.-++.
T Consensus 20 ~~~~dl~TGt~~~~ykg~~~a~~~sl~~-l~~~yllsaq~------~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~ 92 (476)
T KOG0646|consen 20 CIVWDLRTGTSLLQYKGSYLAQAASLTA-LNNEYLLSAQL------KRPLLHVWEILKKDQVVQYIVLPGPVHALASSNL 92 (476)
T ss_pred eeEEecCCCceeEEecCcccccchhhhh-hchhheeeecc------cCccccccccCchhhhhhhcccccceeeeecCCC
Confidence 699999999766554433111 1111 12244444332 35689999987655544 5557889999999988
Q ss_pred eEEEEE---CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEcc---------CCceeE
Q 019349 106 RLVIVL---REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVM---------ELHSHC 173 (342)
Q Consensus 106 ~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~---------~~~~~~ 173 (342)
+.+++. .+.+++|.+.+|.++..+.. +...+.++-++.|+.+++++| .||.|.+|++. +.++.+
T Consensus 93 G~~l~ag~i~g~lYlWelssG~LL~v~~a--HYQ~ITcL~fs~dgs~iiTgs--kDg~V~vW~l~~lv~a~~~~~~~p~~ 168 (476)
T KOG0646|consen 93 GYFLLAGTISGNLYLWELSSGILLNVLSA--HYQSITCLKFSDDGSHIITGS--KDGAVLVWLLTDLVSADNDHSVKPLH 168 (476)
T ss_pred ceEEEeecccCcEEEEEeccccHHHHHHh--hccceeEEEEeCCCcEEEecC--CCccEEEEEEEeecccccCCCcccee
Confidence 766654 68999999999999988854 455788889999999999998 79999999872 446788
Q ss_pred EEecccCCeeEEEECCCC--CEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcE
Q 019349 174 EIDAHQAPLAAIVLSSNG--MYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSL 251 (342)
Q Consensus 174 ~~~~h~~~v~~i~~s~dg--~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i 251 (342)
.+..|+-+|+.+...+.| .+|+|+|.|.+ +|+||+..|.++.++. .+..+.+++..|-++ .+.+|+++|.|
T Consensus 169 ~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t-~k~wdlS~g~LLlti~---fp~si~av~lDpae~---~~yiGt~~G~I 241 (476)
T KOG0646|consen 169 IFSDHTLSITDLQIGSGGTNARLYTASEDRT-IKLWDLSLGVLLLTIT---FPSSIKAVALDPAER---VVYIGTEEGKI 241 (476)
T ss_pred eeccCcceeEEEEecCCCccceEEEecCCce-EEEEEeccceeeEEEe---cCCcceeEEEccccc---EEEecCCcceE
Confidence 899999999999887753 68999999987 6999999999988773 456799999999999 99999999999
Q ss_pred EEEecCCCCCCCC--CCCccccccccccccccccccccccce--eeeccCCCccccEEEEEEeCCcEEEEEEecCCC
Q 019349 252 HVFSPGFAINQRR--GGRTSSILGSILPESVNEVLDPADHHV--LRNAFPAGVKRASVSVITYNGYFVEYIFSINNC 324 (342)
Q Consensus 252 ~vwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~dg~v~~~~~~~~~~ 324 (342)
.+.++........ ..+... . ....+ -...+|.- .++.++...++..|++|+.||.|.+|+.....+
T Consensus 242 ~~~~~~~~~~~~~~v~~k~~~-~---~~t~~---~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~ 311 (476)
T KOG0646|consen 242 FQNLLFKLSGQSAGVNQKGRH-E---ENTQI---NVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQC 311 (476)
T ss_pred EeeehhcCCcccccccccccc-c---cccee---eeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHH
Confidence 9999876542110 000000 0 00000 00011111 223334455678999999999999999876543
No 110
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.86 E-value=8.9e-22 Score=164.55 Aligned_cols=161 Identities=16% Similarity=0.169 Sum_probs=138.6
Q ss_pred CceEEEEEcCCeEEEEE---CCeEEEEECCCCceeeEEeCC------CCCceEEEEeeCCCccEEEEeCCCCccEEEEEE
Q 019349 95 TSILAVRLNKKRLVIVL---REKTYIYDANTLAILDTIDTV------PNLKGLCAFSPSLNACFLAVPASTTKGSVLVYN 165 (342)
Q Consensus 95 ~~v~~i~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd 165 (342)
+.+.+..|+|+..++++ ||-|.+||+-++++-+.++-. .....+.|++++.|...+|+++ .||.|++|.
T Consensus 214 Sh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGs--qDGkIKvWr 291 (508)
T KOG0275|consen 214 SHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGS--QDGKIKVWR 291 (508)
T ss_pred cchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccC--cCCcEEEEE
Confidence 46788899999877766 899999999998776555321 1234678889998888999877 799999999
Q ss_pred ccCCceeEEEe-cccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEE
Q 019349 166 VMELHSHCEID-AHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVA 244 (342)
Q Consensus 166 ~~~~~~~~~~~-~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~ 244 (342)
+++|.+++.|. +|...|+|+.||.|+..++++|.|.+ +|+.-+++|+++++|+.+ ..-|+...|++||. .+++
T Consensus 292 i~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~t-vRiHGlKSGK~LKEfrGH--sSyvn~a~ft~dG~---~iis 365 (508)
T KOG0275|consen 292 IETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQT-VRIHGLKSGKCLKEFRGH--SSYVNEATFTDDGH---HIIS 365 (508)
T ss_pred EecchHHHHhhhhhccCeeEEEEccCcchhhcccccce-EEEeccccchhHHHhcCc--cccccceEEcCCCC---eEEE
Confidence 99999999987 89999999999999999999999986 699999999999999754 55699999999999 9999
Q ss_pred EeCCCcEEEEecCCCCCCC
Q 019349 245 TSSSGSLHVFSPGFAINQR 263 (342)
Q Consensus 245 ~s~dg~i~vwd~~~~~~~~ 263 (342)
+|.||+|+||+.++.+...
T Consensus 366 aSsDgtvkvW~~KtteC~~ 384 (508)
T KOG0275|consen 366 ASSDGTVKVWHGKTTECLS 384 (508)
T ss_pred ecCCccEEEecCcchhhhh
Confidence 9999999999998876543
No 111
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.86 E-value=4.7e-20 Score=165.26 Aligned_cols=290 Identities=14% Similarity=0.115 Sum_probs=198.6
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcEEEEEee-CCEEEEEEcCCCCe--EEEEcCCC-----------
Q 019349 4 QSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAV-GAFSIVEMLYSSSL--LAIVGAGE----------- 68 (342)
Q Consensus 4 ~~~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~g~----------- 68 (342)
..|.+.|+||+..|.|.+||+|+++| +|||.+.+|+.++.... +.|..+.|.+.++. ++++-+..
T Consensus 397 rGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~~ 476 (733)
T KOG0650|consen 397 RGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGDR 476 (733)
T ss_pred eccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCceEEeCccccch
Confidence 35788999999999999999999998 59999999998876554 56667777766542 22211110
Q ss_pred --------------CCCCCCCeEEEEECCCCc-----EEEEEecCCceEEEEEcCCeEEEEE------CCeEEEEECCCC
Q 019349 69 --------------QPSLSPRRLCLFNTTTGT-----ALRELNFLTSILAVRLNKKRLVIVL------REKTYIYDANTL 123 (342)
Q Consensus 69 --------------~~~~~d~~i~iwd~~~~~-----~~~~~~~~~~v~~i~~~~~~~~~~~------d~~i~i~d~~~~ 123 (342)
+....+..+..|.-...+ .-..+.+..+|+.+.|++++-++++ ...|.|+++...
T Consensus 477 ~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~ 556 (733)
T KOG0650|consen 477 LEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKR 556 (733)
T ss_pred hhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEecccc
Confidence 112345677888754211 1235677889999999987655554 248999999876
Q ss_pred ceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcE
Q 019349 124 AILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTI 203 (342)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~ 203 (342)
+.+.-+.... ..+.++.++|...+++++. ...|+|||+.....+..+......|..++++|.|..|+.|+.|+++
T Consensus 557 ~sQ~PF~ksk--G~vq~v~FHPs~p~lfVaT---q~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~ 631 (733)
T KOG0650|consen 557 KSQSPFRKSK--GLVQRVKFHPSKPYLFVAT---QRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKM 631 (733)
T ss_pred cccCchhhcC--CceeEEEecCCCceEEEEe---ccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCee
Confidence 5554443222 2355666677666777664 5789999999887777777667789999999999999999999986
Q ss_pred EEEEEcCCCeeEE-EeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCC--CCCCCccccccccc----
Q 019349 204 IRVFLVSEATKSY-SFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQ--RRGGRTSSILGSIL---- 276 (342)
Q Consensus 204 irlwd~~~~~~~~-~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~--~~~~~~~~~~~~~~---- 276 (342)
+ .||+.-..+.+ +++ .|...+++++|++.-. ++|+|+.||++.||--.--... +..-.+-+.+.++.
T Consensus 632 ~-WfDldlsskPyk~lr--~H~~avr~Va~H~ryP---Lfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~ 705 (733)
T KOG0650|consen 632 C-WFDLDLSSKPYKTLR--LHEKAVRSVAFHKRYP---LFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTND 705 (733)
T ss_pred E-EEEcccCcchhHHhh--hhhhhhhhhhhccccc---eeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecc
Confidence 4 88997664433 333 2355699999999988 9999999999999953211110 00000000011110
Q ss_pred cccccccccccccceeeeccCCCccccEEEEEEeCCcEEEEE
Q 019349 277 PESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYI 318 (342)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~ 318 (342)
-....+.|+|.. ..|++++.||++++|.
T Consensus 706 ~gVLd~~wHP~q--------------pWLfsAGAd~tirlfT 733 (733)
T KOG0650|consen 706 LGVLDTIWHPRQ--------------PWLFSAGADGTIRLFT 733 (733)
T ss_pred cceEeecccCCC--------------ceEEecCCCceEEeeC
Confidence 011234566654 7899999999999983
No 112
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.86 E-value=2.4e-19 Score=149.98 Aligned_cols=239 Identities=14% Similarity=0.118 Sum_probs=166.1
Q ss_pred CeEEEEEcCCCCEEEEEcCC-cEEEEeCCCC--------cE------EEEEe-eCCEEEEEEc-------CCCCeEEEEc
Q 019349 9 PVFFVSFNQDNSGFALSTKD-GFKIFDSSTG--------RL------CYERA-VGAFSIVEML-------YSSSLLAIVG 65 (342)
Q Consensus 9 ~V~~l~fs~d~~~la~g~~~-g~~v~d~~~~--------~~------~~~~~-~~~~~~~~~~-------~~~~~~~~~~ 65 (342)
-...+.|+|||++|++-+++ ++++|++... .+ .+... ...+....+- ++.++++..+
T Consensus 51 f~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ss 130 (406)
T KOG2919|consen 51 FLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSS 130 (406)
T ss_pred hhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecc
Confidence 35578999999998887765 5699986321 11 11111 1233333332 3445555554
Q ss_pred CCCCCCCCCCeEEEEECCCCcEEEEEec---C---CceEEEEEcCCeEEE-EE-CCeEEEEEC-CCCceeeEEeCCCC--
Q 019349 66 AGEQPSLSPRRLCLFNTTTGTALRELNF---L---TSILAVRLNKKRLVI-VL-REKTYIYDA-NTLAILDTIDTVPN-- 134 (342)
Q Consensus 66 ~g~~~~~~d~~i~iwd~~~~~~~~~~~~---~---~~v~~i~~~~~~~~~-~~-d~~i~i~d~-~~~~~~~~~~~~~~-- 134 (342)
.++-|++||.-+|+...++.. . ....+++|++++-.+ +. .+.|++||+ +.++......+..+
T Consensus 131 -------r~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k 203 (406)
T KOG2919|consen 131 -------RDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGK 203 (406)
T ss_pred -------ccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhccc
Confidence 488999999999998877643 2 245789999986544 44 569999999 55543333322221
Q ss_pred ---CceEEEEeeCCCcc-EEEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcC
Q 019349 135 ---LKGLCAFSPSLNAC-FLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVS 210 (342)
Q Consensus 135 ---~~~~~~~~~~~~~~-~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~ 210 (342)
...+.+++++|... .+|.++ ....+-||.-..+.++..+-+|.+.|+.++|.+||+.|.+|+.....|-.||++
T Consensus 204 ~gq~giisc~a~sP~~~~~~a~gs--Y~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR 281 (406)
T KOG2919|consen 204 FGQKGIISCFAFSPMDSKTLAVGS--YGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIR 281 (406)
T ss_pred ccccceeeeeeccCCCCcceeeec--ccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeeh
Confidence 23455777777554 677776 467788888888889999999999999999999999999998755556799998
Q ss_pred C-CeeEEEeccCcCce--eEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCC
Q 019349 211 E-ATKSYSFRRGTYPS--TIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAI 260 (342)
Q Consensus 211 ~-~~~~~~~~~~~~~~--~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~ 260 (342)
. +..++++.++.... .|. ....|+++ +|++|+.||.|++||+++.-
T Consensus 282 ~~~~pv~~L~rhv~~TNQRI~-FDld~~~~---~LasG~tdG~V~vwdlk~~g 330 (406)
T KOG2919|consen 282 YSRDPVYALERHVGDTNQRIL-FDLDPKGE---ILASGDTDGSVRVWDLKDLG 330 (406)
T ss_pred hccchhhhhhhhccCccceEE-EecCCCCc---eeeccCCCccEEEEecCCCC
Confidence 5 45677776654311 232 34468888 99999999999999998743
No 113
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=1.2e-18 Score=158.44 Aligned_cols=239 Identities=12% Similarity=0.119 Sum_probs=184.5
Q ss_pred CCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcE---E-EEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEE
Q 019349 6 SSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRL---C-YERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLF 80 (342)
Q Consensus 6 ~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iw 80 (342)
.+.+|.++||+.+.+.||+|-.+| +.+||+.+.-. . +-...+.+..++|. .+..+..++. ++.|.-|
T Consensus 24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~-------sg~i~Ew 95 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGL-------SGSITEW 95 (691)
T ss_pred eccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecC-------CceEEEE
Confidence 357899999999999999997777 69999988732 1 22233567777776 4455555554 7999999
Q ss_pred ECCCCcEEEEEecC-CceEEEEEcCCe--EEEEE-CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCC
Q 019349 81 NTTTGTALRELNFL-TSILAVRLNKKR--LVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPAST 156 (342)
Q Consensus 81 d~~~~~~~~~~~~~-~~v~~i~~~~~~--~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 156 (342)
|+.+++++..++.. +.|.+++.++.. +.+.. ||.++.++...++.............+.+++++|++..++.++
T Consensus 96 Dl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs-- 173 (691)
T KOG2048|consen 96 DLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGS-- 173 (691)
T ss_pred ecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecc--
Confidence 99999999888764 489999998754 44443 7788888888877665544434446788999999998888776
Q ss_pred CccEEEEEEccCCceeEEEe-----c---ccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEE
Q 019349 157 TKGSVLVYNVMELHSHCEID-----A---HQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIF 228 (342)
Q Consensus 157 ~~g~i~iwd~~~~~~~~~~~-----~---h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~ 228 (342)
.||.|++||..++..++... . -.--|+++.|-.++ .||+|...|+ +++||...|.++..+.. +.+.|.
T Consensus 174 ~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~-V~FWd~~~gTLiqS~~~--h~adVl 249 (691)
T KOG2048|consen 174 IDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGT-VTFWDSIFGTLIQSHSC--HDADVL 249 (691)
T ss_pred cCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCce-EEEEcccCcchhhhhhh--hhccee
Confidence 68999999999988765221 1 22347888887664 6999999998 58999999999888764 366799
Q ss_pred EEEEecCCCcccEEEEEeCCCcEEEEecCCCCC
Q 019349 229 SLSFGQSMQFQDILVATSSSGSLHVFSPGFAIN 261 (342)
Q Consensus 229 ~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~ 261 (342)
+|+-++++. ++.+++.|+.|--|...+...
T Consensus 250 ~Lav~~~~d---~vfsaGvd~~ii~~~~~~~~~ 279 (691)
T KOG2048|consen 250 ALAVADNED---RVFSAGVDPKIIQYSLTTNKS 279 (691)
T ss_pred EEEEcCCCC---eEEEccCCCceEEEEecCCcc
Confidence 999999987 999999999998888776643
No 114
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=3.5e-19 Score=166.71 Aligned_cols=242 Identities=10% Similarity=0.118 Sum_probs=182.7
Q ss_pred EeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCC-cEEEEEe-cCCceEEEEEcCCeEEEEE-CCeEEEEEC
Q 019349 44 RAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTG-TALRELN-FLTSILAVRLNKKRLVIVL-REKTYIYDA 120 (342)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~-~~~~~~~-~~~~v~~i~~~~~~~~~~~-d~~i~i~d~ 120 (342)
.|..+...+++.++++++.+++. |+.|++|+.... +...++. ....|.+++....+++.++ +++|.+|.+
T Consensus 11 aht~G~t~i~~d~~gefi~tcgs-------dg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~~f~~~s~~~tv~~y~f 83 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGS-------DGDIRKWKTNSDEEEPETIDISGELVSSIACYSNHFLTGSEQNTVLRYKF 83 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecC-------CCceEEeecCCcccCCchhhccCceeEEEeecccceEEeeccceEEEeeC
Confidence 35566777888888898777764 899999997655 4444454 5668999999888888888 789999999
Q ss_pred CCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCC
Q 019349 121 NTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQ 200 (342)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~d 200 (342)
.+++.-.-+....-+ +-.++.++++.++|.++ .|-.|++-++........+.+|+.+|.++.|+|++++||+.+-|
T Consensus 84 ps~~~~~iL~Rftlp--~r~~~v~g~g~~iaags--dD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~d 159 (933)
T KOG1274|consen 84 PSGEEDTILARFTLP--IRDLAVSGSGKMIAAGS--DDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCD 159 (933)
T ss_pred CCCCccceeeeeecc--ceEEEEecCCcEEEeec--CceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecC
Confidence 887543222221223 33445566778998887 58899999999998999999999999999999999999999999
Q ss_pred CcEEEEEEcCCCeeEEEeccCc-----C-ceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccc
Q 019349 201 GTIIRVFLVSEATKSYSFRRGT-----Y-PSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGS 274 (342)
Q Consensus 201 g~~irlwd~~~~~~~~~~~~~~-----~-~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 274 (342)
|++ ++||+.++.+...+..-. . ...+..++|+|++. .||+.+.|++|++|+.+.-.+.... ...
T Consensus 160 G~v-~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g---~la~~~~d~~Vkvy~r~~we~~f~L------r~~ 229 (933)
T KOG1274|consen 160 GKV-QIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGG---TLAVPPVDNTVKVYSRKGWELQFKL------RDK 229 (933)
T ss_pred ceE-EEEEcccchhhhhcccCCccccccccceeeeeeecCCCC---eEEeeccCCeEEEEccCCceeheee------ccc
Confidence 985 899999998766653211 1 22367899999987 8999999999999998776553321 111
Q ss_pred cccc-cccccccccccceeeeccCCCccccEEEEEEeCCcEEEEEEe
Q 019349 275 ILPE-SVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFS 320 (342)
Q Consensus 275 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~~~ 320 (342)
.... .....|+|.+ .||++++.||.|-+|+++
T Consensus 230 ~~ss~~~~~~wsPnG--------------~YiAAs~~~g~I~vWnv~ 262 (933)
T KOG1274|consen 230 LSSSKFSDLQWSPNG--------------KYIAASTLDGQILVWNVD 262 (933)
T ss_pred ccccceEEEEEcCCC--------------cEEeeeccCCcEEEEecc
Confidence 1111 1234577755 899999999999999987
No 115
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.86 E-value=4.7e-20 Score=162.19 Aligned_cols=274 Identities=14% Similarity=0.159 Sum_probs=195.1
Q ss_pred CCCCCeEEEEEcCCCCEEEEEcCCcEEEEeCCCC-cE-----EEEEe-eCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeE
Q 019349 5 SSSYPVFFVSFNQDNSGFALSTKDGFKIFDSSTG-RL-----CYERA-VGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRL 77 (342)
Q Consensus 5 ~~~~~V~~l~fs~d~~~la~g~~~g~~v~d~~~~-~~-----~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i 77 (342)
.|..-|..+..|...+++.+|+..+++|||+... .. +-.+. ..-+..+.++.+++.+ ++|| .-.++
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgGkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtL-ivGG------eastl 489 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGGKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTL-IVGG------EASTL 489 (705)
T ss_pred ccCcEEEEEEecCCcceeEecCCCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceE-Eecc------cccee
Confidence 3566788999999999999999999999998543 11 11111 1233444555555555 4454 26799
Q ss_pred EEEECCCCcEEEEEecCC---ceEEEEEcCCeEEE---EECCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEE
Q 019349 78 CLFNTTTGTALRELNFLT---SILAVRLNKKRLVI---VLREKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLA 151 (342)
Q Consensus 78 ~iwd~~~~~~~~~~~~~~---~v~~i~~~~~~~~~---~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 151 (342)
-|||+.........+.+. ...+++.++|--+. ++||.|.|||+.+..+++.++.+.+ +..|+..++++..|=
T Consensus 490 siWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtD--GascIdis~dGtklW 567 (705)
T KOG0639|consen 490 SIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTD--GASCIDISKDGTKLW 567 (705)
T ss_pred eeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCC--CceeEEecCCCceee
Confidence 999998766544444433 56677788875433 3399999999999999999987655 677777788888998
Q ss_pred EeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEE
Q 019349 152 VPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLS 231 (342)
Q Consensus 152 ~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~ 231 (342)
++| -|.+|+.||++++..+.... ..+.|.++-++|.+.+||.|-+.+.+ .|-..... ..+.+ +.+..-|.++.
T Consensus 568 TGG--lDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMens~v-evlh~skp-~kyql--hlheScVLSlK 640 (705)
T KOG0639|consen 568 TGG--LDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSNV-EVLHTSKP-EKYQL--HLHESCVLSLK 640 (705)
T ss_pred cCC--Cccceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecccCcE-EEEecCCc-cceee--cccccEEEEEE
Confidence 888 68999999999987654322 35789999999999999999998864 45555433 22333 44566799999
Q ss_pred EecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEEEEEEeC
Q 019349 232 FGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYN 311 (342)
Q Consensus 232 fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 311 (342)
|.+.|+ ++++.+.|+-+..|....+...-+.++.+. ...|-. ..++.+|++|++|
T Consensus 641 Fa~cGk---wfvStGkDnlLnawrtPyGasiFqskE~Ss--------VlsCDI--------------S~ddkyIVTGSGd 695 (705)
T KOG0639|consen 641 FAYCGK---WFVSTGKDNLLNAWRTPYGASIFQSKESSS--------VLSCDI--------------SFDDKYIVTGSGD 695 (705)
T ss_pred ecccCc---eeeecCchhhhhhccCccccceeeccccCc--------ceeeee--------------ccCceEEEecCCC
Confidence 999999 999999999999998766543221111111 111222 2234799999999
Q ss_pred CcEEEEEE
Q 019349 312 GYFVEYIF 319 (342)
Q Consensus 312 g~v~~~~~ 319 (342)
....+|.+
T Consensus 696 kkATVYeV 703 (705)
T KOG0639|consen 696 KKATVYEV 703 (705)
T ss_pred cceEEEEE
Confidence 99998876
No 116
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.86 E-value=2.6e-18 Score=159.37 Aligned_cols=281 Identities=12% Similarity=0.167 Sum_probs=193.1
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcEEEEEee--CCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEE
Q 019349 4 QSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAV--GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLF 80 (342)
Q Consensus 4 ~~~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iw 80 (342)
+.....|+++.=+|-=..+|+|..+| +.++|+..++.+.+... +.+..+++..+++.+..++. ..+.+.+|
T Consensus 199 ~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~------~~G~m~~w 272 (910)
T KOG1539|consen 199 QEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGR------SNGDMAFW 272 (910)
T ss_pred cccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEecc------CCceEEEE
Confidence 45568899999999999999999998 69999999988876544 77888888888888877766 47899999
Q ss_pred ECCCCcEEEEEe--cCCceEEEEEcCCeEEEEE---CCeEEEEECC--CC--ceeeE-----------------------
Q 019349 81 NTTTGTALRELN--FLTSILAVRLNKKRLVIVL---REKTYIYDAN--TL--AILDT----------------------- 128 (342)
Q Consensus 81 d~~~~~~~~~~~--~~~~v~~i~~~~~~~~~~~---d~~i~i~d~~--~~--~~~~~----------------------- 128 (342)
|+...+.+.... +.+.|....+-+...++.+ |+..++|-+. ++ +.++.
T Consensus 273 DLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ils 352 (910)
T KOG1539|consen 273 DLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILS 352 (910)
T ss_pred EcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEe
Confidence 998877665443 2234444444333332222 4433333221 11 11111
Q ss_pred --------------------------------------------------------------------------------
Q 019349 129 -------------------------------------------------------------------------------- 128 (342)
Q Consensus 129 -------------------------------------------------------------------------------- 128 (342)
T Consensus 353 a~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~ 432 (910)
T KOG1539|consen 353 AKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNK 432 (910)
T ss_pred cccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCc
Confidence
Q ss_pred ------EeCC---CCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCceeEEE---ecccCCeeEEEECCCCCEEEE
Q 019349 129 ------IDTV---PNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEI---DAHQAPLAAIVLSSNGMYIAT 196 (342)
Q Consensus 129 ------~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~---~~h~~~v~~i~~s~dg~~lat 196 (342)
++.. .....+.+++.++.|++.+.+. ..|.|-+|++++|-...++ ++|..+|+.++...-++.+++
T Consensus 433 ~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~--S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vs 510 (910)
T KOG1539|consen 433 TSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGY--SKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVS 510 (910)
T ss_pred ccccEEecCccccccCcceEEEEEeccCceEEEec--cCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEE
Confidence 0000 0001133444455555555444 5799999999999877777 689999999999999999999
Q ss_pred EeCCCcEEEEEEcCCCeeEEEeccC---------------------------------------cCceeEEEEEEecCCC
Q 019349 197 ASEQGTIIRVFLVSEATKSYSFRRG---------------------------------------TYPSTIFSLSFGQSMQ 237 (342)
Q Consensus 197 ~s~dg~~irlwd~~~~~~~~~~~~~---------------------------------------~~~~~v~~l~fs~d~~ 237 (342)
++.+|. +++||..++..+..++-+ .+..+|++++|||||+
T Consensus 511 a~~~Gi-lkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~Dgr 589 (910)
T KOG1539|consen 511 AGADGI-LKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGR 589 (910)
T ss_pred ccCcce-EEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCc
Confidence 999996 689999887754443210 1345699999999999
Q ss_pred cccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEEEEEEeC-CcEEE
Q 019349 238 FQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYN-GYFVE 316 (342)
Q Consensus 238 ~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-g~v~~ 316 (342)
+|++++.|++|++||+.+... +..++-+ +| ...+.+.|.+++|++.+.| .-||+
T Consensus 590 ---WlisasmD~tIr~wDlpt~~l----------ID~~~vd------~~------~~sls~SPngD~LAT~Hvd~~gIyl 644 (910)
T KOG1539|consen 590 ---WLISASMDSTIRTWDLPTGTL----------IDGLLVD------SP------CTSLSFSPNGDFLATVHVDQNGIYL 644 (910)
T ss_pred ---EEEEeecCCcEEEEeccCcce----------eeeEecC------Cc------ceeeEECCCCCEEEEEEecCceEEE
Confidence 999999999999999987653 2222111 01 1233445666899999999 45888
Q ss_pred EE
Q 019349 317 YI 318 (342)
Q Consensus 317 ~~ 318 (342)
|.
T Consensus 645 Ws 646 (910)
T KOG1539|consen 645 WS 646 (910)
T ss_pred EE
Confidence 85
No 117
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=8.5e-21 Score=171.43 Aligned_cols=232 Identities=12% Similarity=0.135 Sum_probs=167.9
Q ss_pred CCCeEEEEECCCCc------EEEEEecCC-ceEEEEE--cCCeEEEEE-CCeEEEEECCCC--ceeeEEeCCCCCceEEE
Q 019349 73 SPRRLCLFNTTTGT------ALRELNFLT-SILAVRL--NKKRLVIVL-REKTYIYDANTL--AILDTIDTVPNLKGLCA 140 (342)
Q Consensus 73 ~d~~i~iwd~~~~~------~~~~~~~~~-~v~~i~~--~~~~~~~~~-d~~i~i~d~~~~--~~~~~~~~~~~~~~~~~ 140 (342)
.|+.|++|+..... .+.+++.+. -|.++.+ +.+.++.++ |-+|++|+.... -++.++.+|.. .+.|
T Consensus 45 RDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~D--YVkc 122 (735)
T KOG0308|consen 45 RDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKD--YVKC 122 (735)
T ss_pred CCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccc--hhee
Confidence 59999999986533 244555443 4566554 344566666 789999999766 45666666655 4556
Q ss_pred Eee-CCCccEEEEeCCCCccEEEEEEccCCc--ee--------EEEe-cccCCeeEEEECCCCCEEEEEeCCCcEEEEEE
Q 019349 141 FSP-SLNACFLAVPASTTKGSVLVYNVMELH--SH--------CEID-AHQAPLAAIVLSSNGMYIATASEQGTIIRVFL 208 (342)
Q Consensus 141 ~~~-~~~~~~l~~~~~~~~g~i~iwd~~~~~--~~--------~~~~-~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd 208 (342)
+++ .++...+|++| -|+.|.+||+.++. .+ ..+. +|..+|.+++-++.|..+++|+..+. +|+||
T Consensus 123 la~~ak~~~lvaSgG--LD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~-lr~wD 199 (735)
T KOG0308|consen 123 LAYIAKNNELVASGG--LDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKD-LRLWD 199 (735)
T ss_pred eeecccCceeEEecC--CCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccc-eEEec
Confidence 666 56667777777 68999999998762 22 2233 88999999999999999999999985 69999
Q ss_pred cCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccc
Q 019349 209 VSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPAD 288 (342)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (342)
-++++++..++. |...|..+..++||+ .++++|+||+|++||+.......+ +.-+ ...+|....
T Consensus 200 prt~~kimkLrG--HTdNVr~ll~~dDGt---~~ls~sSDgtIrlWdLgqQrCl~T----------~~vH-~e~VWaL~~ 263 (735)
T KOG0308|consen 200 PRTCKKIMKLRG--HTDNVRVLLVNDDGT---RLLSASSDGTIRLWDLGQQRCLAT----------YIVH-KEGVWALQS 263 (735)
T ss_pred cccccceeeeec--cccceEEEEEcCCCC---eEeecCCCceEEeeeccccceeee----------EEec-cCceEEEee
Confidence 999999999974 356799999999999 999999999999999987765332 2111 122565543
Q ss_pred cceeeeccCCCccccEEEEEEeCCcEEEEEEecCCCCeeeeEEEeeeec
Q 019349 289 HHVLRNAFPAGVKRASVSVITYNGYFVEYIFSINNCCESTWTLDREFNL 337 (342)
Q Consensus 289 ~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~~~~~~~~~~~~~~~~~~~~ 337 (342)
.+.-.++.+|+.||.|+.=++... .+....-.+++++
T Consensus 264 ----------~~sf~~vYsG~rd~~i~~Tdl~n~--~~~tlick~daPv 300 (735)
T KOG0308|consen 264 ----------SPSFTHVYSGGRDGNIYRTDLRNP--AKSTLICKEDAPV 300 (735)
T ss_pred ----------CCCcceEEecCCCCcEEecccCCc--hhheEeecCCCch
Confidence 223378999999999987766543 4434444555555
No 118
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=3.6e-19 Score=148.47 Aligned_cols=237 Identities=11% Similarity=0.110 Sum_probs=172.2
Q ss_pred CCCCCCCeEEEEEcCCCCEEEEEcCC-cEEEEeCCCCcEEEE--EeeCCEEEEEEcCCCC--eEEEEcCCCCCCCCCCeE
Q 019349 3 NQSSSYPVFFVSFNQDNSGFALSTKD-GFKIFDSSTGRLCYE--RAVGAFSIVEMLYSSS--LLAIVGAGEQPSLSPRRL 77 (342)
Q Consensus 3 ~~~~~~~V~~l~fs~d~~~la~g~~~-g~~v~d~~~~~~~~~--~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~d~~i 77 (342)
-+.|.++|++++.+ +.++|+|+.| .++|||......+-. .|.+.+..+.+.+... .++.++ .|+.|
T Consensus 39 ~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~s-------dDG~i 109 (362)
T KOG0294|consen 39 FSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGS-------DDGHI 109 (362)
T ss_pred ccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeec-------CCCcE
Confidence 45788999999975 6889998765 589999877644322 2446666666554433 333332 59999
Q ss_pred EEEECCCCcEEEEEec-CCceEEEEEcCCeEEEEE---CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEe
Q 019349 78 CLFNTTTGTALRELNF-LTSILAVRLNKKRLVIVL---REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVP 153 (342)
Q Consensus 78 ~iwd~~~~~~~~~~~~-~~~v~~i~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 153 (342)
.+|+...=+++.++.. .+.|+.++++|..-+..+ |+.++.||+-.++.-........+. . +.++|.+.+++..
T Consensus 110 ~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at-~--v~w~~~Gd~F~v~ 186 (362)
T KOG0294|consen 110 IIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKAT-L--VSWSPQGDHFVVS 186 (362)
T ss_pred EEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcce-e--eEEcCCCCEEEEE
Confidence 9999988888887764 458999999997543332 8899999998887555544433322 2 4555667777776
Q ss_pred CCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEE-
Q 019349 154 ASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSF- 232 (342)
Q Consensus 154 ~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~f- 232 (342)
++ ..|-||.+.+.+....+.- ...+.|+.|. ++..|++|++|+. |++||..++....+|..+ ..+|-++.+
T Consensus 187 ~~---~~i~i~q~d~A~v~~~i~~-~~r~l~~~~l-~~~~L~vG~d~~~-i~~~D~ds~~~~~~~~AH--~~RVK~i~~~ 258 (362)
T KOG0294|consen 187 GR---NKIDIYQLDNASVFREIEN-PKRILCATFL-DGSELLVGGDNEW-ISLKDTDSDTPLTEFLAH--ENRVKDIASY 258 (362)
T ss_pred ec---cEEEEEecccHhHhhhhhc-cccceeeeec-CCceEEEecCCce-EEEeccCCCccceeeecc--hhheeeeEEE
Confidence 63 5699999988776555443 2457777775 5678999999986 689999998888888643 667888874
Q ss_pred -ecCCCcccEEEEEeCCCcEEEEecCCCCCC
Q 019349 233 -GQSMQFQDILVATSSSGSLHVFSPGFAINQ 262 (342)
Q Consensus 233 -s~d~~~~~~l~~~s~dg~i~vwd~~~~~~~ 262 (342)
.|++. +|+++|+||.|+|||++...+.
T Consensus 259 ~~~~~~---~lvTaSSDG~I~vWd~~~~~k~ 286 (362)
T KOG0294|consen 259 TNPEHE---YLVTASSDGFIKVWDIDMETKK 286 (362)
T ss_pred ecCCce---EEEEeccCceEEEEEccccccC
Confidence 46677 9999999999999999877543
No 119
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.85 E-value=2.8e-19 Score=147.84 Aligned_cols=208 Identities=13% Similarity=0.152 Sum_probs=148.4
Q ss_pred EEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCc------------EEEEEecC----CceEEEEEcC-
Q 019349 42 YERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGT------------ALRELNFL----TSILAVRLNK- 104 (342)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~------------~~~~~~~~----~~v~~i~~~~- 104 (342)
...|.+.+..+.+........+.|+ .|+.|.+||+++.. ++-..+++ -.|.++.|.|
T Consensus 39 ~r~HgGsvNsL~id~tegrymlSGg------adgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~ 112 (397)
T KOG4283|consen 39 VRPHGGSVNSLQIDLTEGRYMLSGG------ADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPI 112 (397)
T ss_pred eccCCCccceeeeccccceEEeecC------CCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeee
Confidence 3445677777777666555556665 69999999997643 11111121 1567777755
Q ss_pred -CeEEEEE--CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCceeEEEecccCC
Q 019349 105 -KRLVIVL--REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAP 181 (342)
Q Consensus 105 -~~~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~ 181 (342)
.+++..+ |.++++||.++.+....+..+.. ..-.+++|-.....|+.+|. .+-.|++.|+.+|...+++.+|.+.
T Consensus 113 DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me~~-VYshamSp~a~sHcLiA~gt-r~~~VrLCDi~SGs~sH~LsGHr~~ 190 (397)
T KOG4283|consen 113 DTGMFTSSSFDHTLKVWDTNTLQEAVDFKMEGK-VYSHAMSPMAMSHCLIAAGT-RDVQVRLCDIASGSFSHTLSGHRDG 190 (397)
T ss_pred cCceeecccccceEEEeecccceeeEEeecCce-eehhhcChhhhcceEEEEec-CCCcEEEEeccCCcceeeeccccCc
Confidence 3555544 99999999999887777765432 12223443323233444443 5789999999999999999999999
Q ss_pred eeEEEECCCCCE-EEEEeCCCcEEEEEEcCCC-eeEEEec------------cCcCceeEEEEEEecCCCcccEEEEEeC
Q 019349 182 LAAIVLSSNGMY-IATASEQGTIIRVFLVSEA-TKSYSFR------------RGTYPSTIFSLSFGQSMQFQDILVATSS 247 (342)
Q Consensus 182 v~~i~~s~dg~~-lat~s~dg~~irlwd~~~~-~~~~~~~------------~~~~~~~v~~l~fs~d~~~~~~l~~~s~ 247 (342)
|.++.|+|...+ |||||.||+ ||+||++.. -++..+. ...+.+++++++|+.|+. +|++.+.
T Consensus 191 vlaV~Wsp~~e~vLatgsaDg~-irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~---~l~~~gt 266 (397)
T KOG4283|consen 191 VLAVEWSPSSEWVLATGSADGA-IRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDAR---YLASCGT 266 (397)
T ss_pred eEEEEeccCceeEEEecCCCce-EEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccch---hhhhccC
Confidence 999999997765 899999998 599999754 2322222 223445799999999999 9999999
Q ss_pred CCcEEEEecCCCCC
Q 019349 248 SGSLHVFSPGFAIN 261 (342)
Q Consensus 248 dg~i~vwd~~~~~~ 261 (342)
|..+++|+...++.
T Consensus 267 d~r~r~wn~~~G~n 280 (397)
T KOG4283|consen 267 DDRIRVWNMESGRN 280 (397)
T ss_pred ccceEEeecccCcc
Confidence 99999999987754
No 120
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=4.8e-20 Score=148.63 Aligned_cols=239 Identities=15% Similarity=0.207 Sum_probs=170.2
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCC---cEEEE--EeeCCEEEEEEcCC--CCeEEEEcCCCCCCCCCC
Q 019349 4 QSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTG---RLCYE--RAVGAFSIVEMLYS--SSLLAIVGAGEQPSLSPR 75 (342)
Q Consensus 4 ~~~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~---~~~~~--~~~~~~~~~~~~~~--~~~~~~~~~g~~~~~~d~ 75 (342)
+.|+.-|..+..+=-|++||+++.|+ ++||...+. +++.+ .|.+++--+.+++. +++++.++ .|+
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScs-------YDg 80 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCS-------YDG 80 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEee-------cCc
Confidence 45666677777777889999887776 699987654 33333 45578888888874 46666665 499
Q ss_pred eEEEEECCCCcEEEEEe---cCCceEEEEEcCC--eEEE--EE-CCeEEEEECCCC-c-eeeEEeCCCCCceEEEEeeCC
Q 019349 76 RLCLFNTTTGTALRELN---FLTSILAVRLNKK--RLVI--VL-REKTYIYDANTL-A-ILDTIDTVPNLKGLCAFSPSL 145 (342)
Q Consensus 76 ~i~iwd~~~~~~~~~~~---~~~~v~~i~~~~~--~~~~--~~-d~~i~i~d~~~~-~-~~~~~~~~~~~~~~~~~~~~~ 145 (342)
+|+||.-.+|+-..... +...|++|++.|. ++++ ++ ||.|.|.++.+. . ....+ ...++.++.++++.|
T Consensus 81 kVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki-~~aH~~GvnsVswap 159 (299)
T KOG1332|consen 81 KVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKI-VFAHEIGVNSVSWAP 159 (299)
T ss_pred eEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhh-hhccccccceeeecC
Confidence 99999998886544333 3568999999775 3333 33 999999988653 1 11122 123445565666554
Q ss_pred C---c-----------cEEEEeCCCCccEEEEEEccCCc--eeEEEecccCCeeEEEECCCC----CEEEEEeCCCcEEE
Q 019349 146 N---A-----------CFLAVPASTTKGSVLVYNVMELH--SHCEIDAHQAPLAAIVLSSNG----MYIATASEQGTIIR 205 (342)
Q Consensus 146 ~---~-----------~~l~~~~~~~~g~i~iwd~~~~~--~~~~~~~h~~~v~~i~~s~dg----~~lat~s~dg~~ir 205 (342)
. + ..|+++| .|..|+||+..+++ ...++.+|.+.|+.+++.|.- .+||++|+||++|
T Consensus 160 a~~~g~~~~~~~~~~~krlvSgG--cDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~vi- 236 (299)
T KOG1332|consen 160 ASAPGSLVDQGPAAKVKRLVSGG--CDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVI- 236 (299)
T ss_pred cCCCccccccCcccccceeeccC--CccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEE-
Confidence 3 2 4588888 58999999988763 345689999999999999964 5799999999987
Q ss_pred EEEcCCCee--EEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecC
Q 019349 206 VFLVSEATK--SYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPG 257 (342)
Q Consensus 206 lwd~~~~~~--~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~ 257 (342)
||-...... ..++. +..+..++.++||+.|. +|++++.|+.|.+|.-.
T Consensus 237 Iwt~~~e~e~wk~tll-~~f~~~~w~vSWS~sGn---~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 237 IWTKDEEYEPWKKTLL-EEFPDVVWRVSWSLSGN---ILAVSGGDNKVTLWKEN 286 (299)
T ss_pred EEEecCccCccccccc-ccCCcceEEEEEecccc---EEEEecCCcEEEEEEeC
Confidence 998763211 11111 12355699999999998 99999999999999643
No 121
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.85 E-value=5.4e-18 Score=149.41 Aligned_cols=272 Identities=14% Similarity=0.139 Sum_probs=194.2
Q ss_pred CCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcEEEE--EeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCC
Q 019349 8 YPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYE--RAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTT 84 (342)
Q Consensus 8 ~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~ 84 (342)
.-|.|++|.++|. +++|..+| +.||+..+.+.... .|.+++..+.++.++..+- |+ .|++|..|| ..
T Consensus 247 k~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllS--Gg------KDRki~~Wd-~~ 316 (626)
T KOG2106|consen 247 KFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLS--GG------KDRKIILWD-DN 316 (626)
T ss_pred eEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEee--cC------ccceEEecc-cc
Confidence 6799999999998 55777777 59999876654433 5668888888887765543 44 699999999 44
Q ss_pred CcEEEEEecC---CceEEEEEcCCeEEEEE-CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccE
Q 019349 85 GTALRELNFL---TSILAVRLNKKRLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGS 160 (342)
Q Consensus 85 ~~~~~~~~~~---~~v~~i~~~~~~~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~ 160 (342)
-+.++.++.+ +.|+.|+-.+..+++.+ .+.|..=+++++-.+..+ . +......++.+|....+++++ .|+.
T Consensus 317 y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~-g--h~delwgla~hps~~q~~T~g--qdk~ 391 (626)
T KOG2106|consen 317 YRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQ-G--HGDELWGLATHPSKNQLLTCG--QDKH 391 (626)
T ss_pred ccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEE-e--cccceeeEEcCCChhheeecc--Ccce
Confidence 4555555554 47888888776677766 567776677766333222 2 233678888888888999998 7999
Q ss_pred EEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCccc
Q 019349 161 VLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQD 240 (342)
Q Consensus 161 i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~ 240 (342)
+++|+ ..+++-+.. -..+..|+.|+|.| .||.|...|.-+ +.|.++...+..- ...+++.+|+|+|+|.
T Consensus 392 v~lW~--~~k~~wt~~-~~d~~~~~~fhpsg-~va~Gt~~G~w~-V~d~e~~~lv~~~---~d~~~ls~v~ysp~G~--- 460 (626)
T KOG2106|consen 392 VRLWN--DHKLEWTKI-IEDPAECADFHPSG-VVAVGTATGRWF-VLDTETQDLVTIH---TDNEQLSVVRYSPDGA--- 460 (626)
T ss_pred EEEcc--CCceeEEEE-ecCceeEeeccCcc-eEEEeeccceEE-EEecccceeEEEE---ecCCceEEEEEcCCCC---
Confidence 99999 334443332 35788999999999 999999999865 9999885554433 2256799999999999
Q ss_pred EEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEEEEEEeCCcEEEEEEe
Q 019349 241 ILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFS 320 (342)
Q Consensus 241 ~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~~~ 320 (342)
+||.||.|+.|+||.+......-+ +-..+.++ ....--|+++. ++|.+-+.|-.+-.| .
T Consensus 461 ~lAvgs~d~~iyiy~Vs~~g~~y~--r~~k~~gs---~ithLDwS~Ds--------------~~~~~~S~d~eiLyW--~ 519 (626)
T KOG2106|consen 461 FLAVGSHDNHIYIYRVSANGRKYS--RVGKCSGS---PITHLDWSSDS--------------QFLVSNSGDYEILYW--K 519 (626)
T ss_pred EEEEecCCCeEEEEEECCCCcEEE--EeeeecCc---eeEEeeecCCC--------------ceEEeccCceEEEEE--c
Confidence 999999999999999987643211 11111111 11122455544 889999999888888 5
Q ss_pred cCCCCe
Q 019349 321 INNCCE 326 (342)
Q Consensus 321 ~~~~~~ 326 (342)
+.++.+
T Consensus 520 ~~~~~~ 525 (626)
T KOG2106|consen 520 PSECKQ 525 (626)
T ss_pred cccCcc
Confidence 555543
No 122
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=1.1e-19 Score=158.62 Aligned_cols=235 Identities=14% Similarity=0.128 Sum_probs=170.5
Q ss_pred CCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcEEEEE--eeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECC
Q 019349 7 SYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYER--AVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTT 83 (342)
Q Consensus 7 ~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~ 83 (342)
+++|.+++-+|+|.+|+.|+..+ +.+|.+.+|.++... |...+.++.+.-++..++..| .|+.|.+|++.
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgs-------kDg~V~vW~l~ 153 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGS-------KDGAVLVWLLT 153 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecC-------CCccEEEEEEE
Confidence 57899999999999999997776 799999999887544 445666666655555554433 69999999964
Q ss_pred C---------CcEEEEEecCC-ceEEEEEcCC----eEEEEE-CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCcc
Q 019349 84 T---------GTALRELNFLT-SILAVRLNKK----RLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNAC 148 (342)
Q Consensus 84 ~---------~~~~~~~~~~~-~v~~i~~~~~----~~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (342)
. -+++..+..+. +|+++..... +++.++ |.++++||+..+.++.++..+ ..+.++..+|.++
T Consensus 154 ~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp---~si~av~lDpae~ 230 (476)
T KOG0646|consen 154 DLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFP---SSIKAVALDPAER 230 (476)
T ss_pred eecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecC---CcceeEEEccccc
Confidence 2 23444444333 8888887543 455555 889999999999999888653 3466667777777
Q ss_pred EEEEeCCCCccEEEEEEccCC----------------ceeEEEecccC--CeeEEEECCCCCEEEEEeCCCcEEEEEEcC
Q 019349 149 FLAVPASTTKGSVLVYNVMEL----------------HSHCEIDAHQA--PLAAIVLSSNGMYIATASEQGTIIRVFLVS 210 (342)
Q Consensus 149 ~l~~~~~~~~g~i~iwd~~~~----------------~~~~~~~~h~~--~v~~i~~s~dg~~lat~s~dg~~irlwd~~ 210 (342)
.+.+++ .+|.|.+.++.+. ..+..+.+|.+ +|+|++++-||++|++|+.||++ +|||+.
T Consensus 231 ~~yiGt--~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~V-cvWdi~ 307 (476)
T KOG0646|consen 231 VVYIGT--EEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKV-CVWDIY 307 (476)
T ss_pred EEEecC--CcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCE-EEEecc
Confidence 776665 6899999886432 23456778988 99999999999999999999985 799999
Q ss_pred CCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCC
Q 019349 211 EATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGF 258 (342)
Q Consensus 211 ~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~ 258 (342)
+.+++.++.. ..++|+.+.+.|=.+. .+..-...-.+-.|+++.
T Consensus 308 S~Q~iRtl~~--~kgpVtnL~i~~~~~~--~~l~~~~~ps~~~~~lkr 351 (476)
T KOG0646|consen 308 SKQCIRTLQT--SKGPVTNLQINPLERG--IILFEHKQPSLPNPHLKR 351 (476)
T ss_pred hHHHHHHHhh--hccccceeEeeccccc--eecccccCccCCchHhhc
Confidence 9999887742 3567888888665430 222223333455555543
No 123
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=2.2e-18 Score=150.29 Aligned_cols=283 Identities=14% Similarity=0.160 Sum_probs=193.0
Q ss_pred CCCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCC--cEEEEEee--CCEEEEEEcCCCCeEEEEcCCCCCCCCCCe
Q 019349 2 SNQSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTG--RLCYERAV--GAFSIVEMLYSSSLLAIVGAGEQPSLSPRR 76 (342)
Q Consensus 2 ~~~~~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~--~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~ 76 (342)
...+..++|+++.|+|....|.+++-++ +++|-++.. .++...+. -++....+.+.+.-.++.++ ....
T Consensus 208 a~~ps~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~------rrky 281 (514)
T KOG2055|consen 208 AAHPSHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSG------RRKY 281 (514)
T ss_pred cCCcCcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecc------cceE
Confidence 4556788999999999999877766655 799987543 33434333 45666677777664555554 3678
Q ss_pred EEEEECCCCcEEEEEec----CCceEEEEEcCCeEEEEE---CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccE
Q 019349 77 LCLFNTTTGTALRELNF----LTSILAVRLNKKRLVIVL---REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACF 149 (342)
Q Consensus 77 i~iwd~~~~~~~~~~~~----~~~v~~i~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (342)
+..||+.+.+...--.. ...+....++++..+++. .|.|++....+++.+.++.... .+..+.++.++..
T Consensus 282 ~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG---~v~~~~fsSdsk~ 358 (514)
T KOG2055|consen 282 LYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEG---VVSDFTFSSDSKE 358 (514)
T ss_pred EEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeecc---EEeeEEEecCCcE
Confidence 99999988764432211 124555666666544444 6789999989998888886543 3556666677777
Q ss_pred EEEeCCCCccEEEEEEccCCceeEEEecccC-CeeEEEECCCCCEEEEEeCCCcEEEEEEcCCC------eeEEEeccCc
Q 019349 150 LAVPASTTKGSVLVYNVMELHSHCEIDAHQA-PLAAIVLSSNGMYIATASEQGTIIRVFLVSEA------TKSYSFRRGT 222 (342)
Q Consensus 150 l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~-~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~------~~~~~~~~~~ 222 (342)
|..++ .+|.|.+||++...+++.+....+ .=++++.|++|.+||+||..|- +.|||..+. +++..+..
T Consensus 359 l~~~~--~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~Gi-VNIYd~~s~~~s~~PkPik~~dN-- 433 (514)
T KOG2055|consen 359 LLASG--GTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGI-VNIYDGNSCFASTNPKPIKTVDN-- 433 (514)
T ss_pred EEEEc--CCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcce-EEEeccchhhccCCCCchhhhhh--
Confidence 77777 479999999999998888763211 2367888999999999999984 699996542 23333321
Q ss_pred CceeEEEEEEecCCCcccEEEEEeC--CCcEEEEecCCCCCCCCCCCccccccccccccccccccccccce-eeeccCCC
Q 019349 223 YPSTIFSLSFGQSMQFQDILVATSS--SGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHV-LRNAFPAG 299 (342)
Q Consensus 223 ~~~~v~~l~fs~d~~~~~~l~~~s~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 299 (342)
-...|++|.|+||.+ +||.+|. ++.+++--+..... +. =|-+...++ .+..++|.
T Consensus 434 Ltt~Itsl~Fn~d~q---iLAiaS~~~knalrLVHvPS~TV----------Fs---------NfP~~n~~vg~vtc~aFS 491 (514)
T KOG2055|consen 434 LTTAITSLQFNHDAQ---ILAIASRVKKNALRLVHVPSCTV----------FS---------NFPTSNTKVGHVTCMAFS 491 (514)
T ss_pred hheeeeeeeeCcchh---hhhhhhhccccceEEEeccceee----------ec---------cCCCCCCcccceEEEEec
Confidence 123599999999999 8988875 56677776543321 11 111111111 12345677
Q ss_pred ccccEEEEEEeCCcEEEEEEe
Q 019349 300 VKRASVSVITYNGYFVEYIFS 320 (342)
Q Consensus 300 ~~~~~l~~~~~dg~v~~~~~~ 320 (342)
|.+.++++|..+|.+.+|.+.
T Consensus 492 P~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 492 PNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred CCCceEEeecCCCceeeEeec
Confidence 877999999999999999874
No 124
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=1.2e-18 Score=145.43 Aligned_cols=216 Identities=11% Similarity=0.140 Sum_probs=156.3
Q ss_pred CCCeEEEEECCCCcEEEEE-ecCCceEEEEEcCCe----EEEEE-CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCC
Q 019349 73 SPRRLCLFNTTTGTALREL-NFLTSILAVRLNKKR----LVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLN 146 (342)
Q Consensus 73 ~d~~i~iwd~~~~~~~~~~-~~~~~v~~i~~~~~~----~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (342)
.|.+|+|||+++...+..+ .+.+.|+++.|.+.. ++.++ ||.|.+|+..+..++.+++.|... +..++.+|.
T Consensus 61 sDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~--Vt~lsiHPS 138 (362)
T KOG0294|consen 61 SDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQ--VTDLSIHPS 138 (362)
T ss_pred CCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccc--cceeEecCC
Confidence 6999999999998888765 456689999997754 55555 889999999999999999888775 556666666
Q ss_pred ccEEEEeCCCCccEEEEEEccCCceeEEEe-cccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCce
Q 019349 147 ACFLAVPASTTKGSVLVYNVMELHSHCEID-AHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPS 225 (342)
Q Consensus 147 ~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~-~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~ 225 (342)
+.+-.+.| .|+.+++||+.+++.-..+. .|.. +.|.|+|.|.+++.++.++ |-+|.+.+.....++. .+.
T Consensus 139 ~KLALsVg--~D~~lr~WNLV~Gr~a~v~~L~~~a--t~v~w~~~Gd~F~v~~~~~--i~i~q~d~A~v~~~i~---~~~ 209 (362)
T KOG0294|consen 139 GKLALSVG--GDQVLRTWNLVRGRVAFVLNLKNKA--TLVSWSPQGDHFVVSGRNK--IDIYQLDNASVFREIE---NPK 209 (362)
T ss_pred CceEEEEc--CCceeeeehhhcCccceeeccCCcc--eeeEEcCCCCEEEEEeccE--EEEEecccHhHhhhhh---ccc
Confidence 66655666 58999999999887644443 2333 3499999999999999885 4699998876655543 234
Q ss_pred eEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEE
Q 019349 226 TIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASV 305 (342)
Q Consensus 226 ~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 305 (342)
++.++-|-..+ .|++|.+|+.|.+||-+...+... ++ .++. ++.....-..+...+|
T Consensus 210 r~l~~~~l~~~----~L~vG~d~~~i~~~D~ds~~~~~~----------~~-------AH~~--RVK~i~~~~~~~~~~l 266 (362)
T KOG0294|consen 210 RILCATFLDGS----ELLVGGDNEWISLKDTDSDTPLTE----------FL-------AHEN--RVKDIASYTNPEHEYL 266 (362)
T ss_pred cceeeeecCCc----eEEEecCCceEEEeccCCCcccee----------ee-------cchh--heeeeEEEecCCceEE
Confidence 57777775444 799999999999999876443211 11 1111 1111111123344799
Q ss_pred EEEEeCCcEEEEEEecC
Q 019349 306 SVITYNGYFVEYIFSIN 322 (342)
Q Consensus 306 ~~~~~dg~v~~~~~~~~ 322 (342)
+++|+||.|++|+++.+
T Consensus 267 vTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 267 VTASSDGFIKVWDIDME 283 (362)
T ss_pred EEeccCceEEEEEcccc
Confidence 99999999999999887
No 125
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=1.5e-18 Score=144.97 Aligned_cols=286 Identities=10% Similarity=0.147 Sum_probs=197.0
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcEE--EEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEE
Q 019349 4 QSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLC--YERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLF 80 (342)
Q Consensus 4 ~~~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iw 80 (342)
..+...|..++-......+.+++.|- .+||.+++++.+ |..|.+.+..+.+..+..+++..+| |.+-+||
T Consensus 145 ~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSG-------D~taHIW 217 (481)
T KOG0300|consen 145 EGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASG-------DETAHIW 217 (481)
T ss_pred cccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccC-------CcchHHH
Confidence 35777888888877777777777765 599999999776 5556688888888887777777776 7888888
Q ss_pred ECC------CC--------c--------------------------EEEEEe-cCCceEEEEE--cCCeEEEEE-CCeEE
Q 019349 81 NTT------TG--------T--------------------------ALRELN-FLTSILAVRL--NKKRLVIVL-REKTY 116 (342)
Q Consensus 81 d~~------~~--------~--------------------------~~~~~~-~~~~v~~i~~--~~~~~~~~~-d~~i~ 116 (342)
... +. + ++..+. +...|.+..| ..+.++.++ |.+..
T Consensus 218 ~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAn 297 (481)
T KOG0300|consen 218 KAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTAN 297 (481)
T ss_pred HHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccce
Confidence 721 10 0 001111 0112222233 234445555 89999
Q ss_pred EEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCC-ceeEEEecccCCeeEEEECCCCCEEE
Q 019349 117 IYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMEL-HSHCEIDAHQAPLAAIVLSSNGMYIA 195 (342)
Q Consensus 117 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~-~~~~~~~~h~~~v~~i~~s~dg~~la 195 (342)
+||++++.+++.+..|...-.- .+.+|...++++++ .|-+.++||.+.. ..+..|++|...|+++.|..| ..++
T Consensus 298 lwDVEtge~v~~LtGHd~ELtH--cstHptQrLVvTsS--rDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~d-d~vV 372 (481)
T KOG0300|consen 298 LWDVETGEVVNILTGHDSELTH--CSTHPTQRLVVTSS--RDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTD-DRVV 372 (481)
T ss_pred eeeeccCceeccccCcchhccc--cccCCcceEEEEec--cCceeEeccchhhcceeeeecccccceeEEEEecC-Ccee
Confidence 9999999999998877664333 44566666777766 5899999999743 457789999999999999886 4599
Q ss_pred EEeCCCcEEEEEEcCCCe-eEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccc
Q 019349 196 TASEQGTIIRVFLVSEAT-KSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGS 274 (342)
Q Consensus 196 t~s~dg~~irlwd~~~~~-~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 274 (342)
+||+|.+ ||+||+++.. .+.+++. ..+++.++.+..+. .+|.--++..|++||+......+-+. .+.. +
T Consensus 373 SgSDDrT-vKvWdLrNMRsplATIRt---dS~~NRvavs~g~~---iIAiPhDNRqvRlfDlnG~RlaRlPr-tsRq--g 442 (481)
T KOG0300|consen 373 SGSDDRT-VKVWDLRNMRSPLATIRT---DSPANRVAVSKGHP---IIAIPHDNRQVRLFDLNGNRLARLPR-TSRQ--G 442 (481)
T ss_pred ecCCCce-EEEeeeccccCcceeeec---CCccceeEeecCCc---eEEeccCCceEEEEecCCCccccCCc-cccc--c
Confidence 9999987 6999998764 5666643 34588899998887 77777777889999998765433211 1100 0
Q ss_pred cccccccccccccccceeeeccCCCccccEEEEEEeCCcEEEEEEecCC
Q 019349 275 ILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSINN 323 (342)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~~~~~~ 323 (342)
+---...+.|..+- ....|++++.|..+.-|.++...
T Consensus 443 HrRMV~c~AW~eeh------------p~cnLftcGFDR~v~gW~in~p~ 479 (481)
T KOG0300|consen 443 HRRMVTCCAWLEEH------------PACNLFTCGFDRMVAGWKINTPT 479 (481)
T ss_pred cceeeeeeeccccC------------cccccccccccceeeeeEecccC
Confidence 00000123454321 12679999999999999887643
No 126
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.83 E-value=8.2e-21 Score=173.34 Aligned_cols=211 Identities=14% Similarity=0.217 Sum_probs=165.3
Q ss_pred EEEEeCCCCcEEEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEEEEEec-CCceEEEEEcCCeEE
Q 019349 30 FKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNF-LTSILAVRLNKKRLV 108 (342)
Q Consensus 30 ~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~~~~-~~~v~~i~~~~~~~~ 108 (342)
+++|+.... ..|...+....+ ..+....+.|| .+..+-+|......++..+.. ..+|.++.|+....+
T Consensus 16 Lr~~~~~~~----~~hsaav~~lk~-~~s~r~~~~Gg------~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~L 84 (825)
T KOG0267|consen 16 LRVWDTREF----VAHSAAVGCLKI-RKSSRSLVTGG------EDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERL 84 (825)
T ss_pred cccccchhh----hhhhhhhceeee-eccceeeccCC------CceeeccccccCCchhheeeccCCcceeeecCcchhh
Confidence 577775432 112223333444 23334444554 478888999988878877654 559999999887655
Q ss_pred EEE---CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCceeEEEecccCCeeEE
Q 019349 109 IVL---REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAI 185 (342)
Q Consensus 109 ~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i 185 (342)
++. +++|++||++..+.++++..+.. .++.+.++|-+.+.|.++ .|..+.+||.+...+.+.+.+|...|.++
T Consensus 85 laagsasgtiK~wDleeAk~vrtLtgh~~--~~~sv~f~P~~~~~a~gS--tdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l 160 (825)
T KOG0267|consen 85 LAAGSASGTIKVWDLEEAKIVRTLTGHLL--NITSVDFHPYGEFFASGS--TDTDLKIWDIRKKGCSHTYKSHTRVVDVL 160 (825)
T ss_pred hcccccCCceeeeehhhhhhhhhhhcccc--CcceeeeccceEEecccc--ccccceehhhhccCceeeecCCcceeEEE
Confidence 544 88999999999998888866544 456666777777876554 68999999999888999999999999999
Q ss_pred EECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCC
Q 019349 186 VLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAIN 261 (342)
Q Consensus 186 ~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~ 261 (342)
+|+|+|+++++|++|.+ +++||...|+.+.+|.. +.+.+.++.|+|.+- +|+.||.|++|++||+++...
T Consensus 161 ~lsP~Gr~v~~g~ed~t-vki~d~~agk~~~ef~~--~e~~v~sle~hp~e~---Lla~Gs~d~tv~f~dletfe~ 230 (825)
T KOG0267|consen 161 RLSPDGRWVASGGEDNT-VKIWDLTAGKLSKEFKS--HEGKVQSLEFHPLEV---LLAPGSSDRTVRFWDLETFEV 230 (825)
T ss_pred eecCCCceeeccCCcce-eeeeccccccccccccc--ccccccccccCchhh---hhccCCCCceeeeeccceeEE
Confidence 99999999999999986 69999999999999964 356789999999998 899999999999999996543
No 127
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.83 E-value=7.8e-19 Score=155.00 Aligned_cols=238 Identities=11% Similarity=0.141 Sum_probs=168.4
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcEEEEE-----------eeCCEE---EEEEcCCCCeEEEEcCCC
Q 019349 4 QSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYER-----------AVGAFS---IVEMLYSSSLLAIVGAGE 68 (342)
Q Consensus 4 ~~~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~~~~~-----------~~~~~~---~~~~~~~~~~~~~~~~g~ 68 (342)
+.....|++++|++.|..|++.+... .+|+|-+..++.... ..++++ +.+|.+...-.++..+
T Consensus 211 P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s-- 288 (641)
T KOG0772|consen 211 PCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCS-- 288 (641)
T ss_pred cccccccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEec--
Confidence 34456899999999998876665555 599997655443211 123333 3345554433333333
Q ss_pred CCCCCCCeEEEEECCCCc-EEEEEec------CCceEEEEEcCCeEEEEE---CCeEEEEECCCCce--eeEE-eCCCCC
Q 019349 69 QPSLSPRRLCLFNTTTGT-ALRELNF------LTSILAVRLNKKRLVIVL---REKTYIYDANTLAI--LDTI-DTVPNL 135 (342)
Q Consensus 69 ~~~~~d~~i~iwd~~~~~-~~~~~~~------~~~v~~i~~~~~~~~~~~---d~~i~i~d~~~~~~--~~~~-~~~~~~ 135 (342)
.|++++|||+.+.+ ....+.. .-++..++|+++...+|. ||.|.+|+..+... ...+ +.|...
T Consensus 289 ----~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g 364 (641)
T KOG0772|consen 289 ----YDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPG 364 (641)
T ss_pred ----CCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCC
Confidence 59999999986543 3333332 126789999998766654 99999999865422 2222 445555
Q ss_pred ceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCc-eeEEEecc--cCCeeEEEECCCCCEEEEEeC------CCcEEEE
Q 019349 136 KGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELH-SHCEIDAH--QAPLAAIVLSSNGMYIATASE------QGTIIRV 206 (342)
Q Consensus 136 ~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~-~~~~~~~h--~~~v~~i~~s~dg~~lat~s~------dg~~irl 206 (342)
..+.+++++.++++|++-| .|+++++||+++.+ ++....+- .-+-+.++|||+.++|+||.. .|++ .+
T Consensus 365 ~~Itsi~FS~dg~~LlSRg--~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L-~f 441 (641)
T KOG0772|consen 365 QDITSISFSYDGNYLLSRG--FDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTL-FF 441 (641)
T ss_pred CceeEEEeccccchhhhcc--CCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceE-EE
Confidence 6899999999999999888 68999999998765 45444332 235577889999999999864 3654 69
Q ss_pred EEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEe
Q 019349 207 FLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFS 255 (342)
Q Consensus 207 wd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd 255 (342)
||..+-+.++++.- ..+.|..+.|+|.-+ .|.+|+.||++|||=
T Consensus 442 ~d~~t~d~v~ki~i--~~aSvv~~~WhpkLN---Qi~~gsgdG~~~vyY 485 (641)
T KOG0772|consen 442 FDRMTLDTVYKIDI--STASVVRCLWHPKLN---QIFAGSGDGTAHVYY 485 (641)
T ss_pred EeccceeeEEEecC--CCceEEEEeecchhh---heeeecCCCceEEEE
Confidence 99999888888753 356688999999876 899999999999984
No 128
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.82 E-value=1.1e-18 Score=145.40 Aligned_cols=239 Identities=13% Similarity=0.109 Sum_probs=187.3
Q ss_pred CCCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcEE----EEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEE
Q 019349 5 SSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLC----YERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCL 79 (342)
Q Consensus 5 ~~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~i 79 (342)
.|..+|+++.|+|....|++|+.|+ +++||....... +-.+...+..+.+.+++.++++... -.++++
T Consensus 170 DH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTd-------Hp~~rl 242 (430)
T KOG0640|consen 170 DHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTD-------HPTLRL 242 (430)
T ss_pred hccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecC-------CCceeE
Confidence 4667899999999999999999887 699998654211 1123366778888888888876553 679999
Q ss_pred EECCCCcEEEEEe----cCCceEEEEEcCCeEEEEE---CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEE
Q 019349 80 FNTTTGTALRELN----FLTSILAVRLNKKRLVIVL---REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAV 152 (342)
Q Consensus 80 wd~~~~~~~~~~~----~~~~v~~i~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 152 (342)
||+.+-+|..... +...|.++..++...+.++ ||.|++||--+.++++++........+|+.-+..++.++.+
T Consensus 243 Ydv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLs 322 (430)
T KOG0640|consen 243 YDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILS 322 (430)
T ss_pred EeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEee
Confidence 9999998876553 3458999999887544433 99999999999999999876666677888888889999999
Q ss_pred eCCCCccEEEEEEccCCceeEEEeccc-----CCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeE
Q 019349 153 PASTTKGSVLVYNVMELHSHCEIDAHQ-----APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTI 227 (342)
Q Consensus 153 ~~~~~~g~i~iwd~~~~~~~~~~~~h~-----~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v 227 (342)
+| .|..|++|++.++.++..+.+.. .--+...|+....+++.-.+...-+.-||.+++..+..+..+ |.+.+
T Consensus 323 SG--~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slg-Hn~a~ 399 (430)
T KOG0640|consen 323 SG--KDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLG-HNGAV 399 (430)
T ss_pred cC--CcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccC-CCCCc
Confidence 98 68999999999999988876431 112334588888888876655444568999999877666555 45678
Q ss_pred EEEEEecCCCcccEEEEEeCCCcEEEEec
Q 019349 228 FSLSFGQSMQFQDILVATSSSGSLHVFSP 256 (342)
Q Consensus 228 ~~l~fs~d~~~~~~l~~~s~dg~i~vwd~ 256 (342)
..+.-||.+. -+.++|.|..+++|--
T Consensus 400 R~i~HSP~~p---~FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 400 RWIVHSPVEP---AFMTCSDDFRARFWYR 425 (430)
T ss_pred eEEEeCCCCC---ceeeecccceeeeeee
Confidence 9999999998 8999999999999963
No 129
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.82 E-value=3e-18 Score=146.11 Aligned_cols=181 Identities=11% Similarity=0.167 Sum_probs=128.4
Q ss_pred CCCeEEEEECCCC----------------cEEEEEec-CCceEEEEEcCC--eEEEEEC--CeEEEEECCCCce-eeEEe
Q 019349 73 SPRRLCLFNTTTG----------------TALRELNF-LTSILAVRLNKK--RLVIVLR--EKTYIYDANTLAI-LDTID 130 (342)
Q Consensus 73 ~d~~i~iwd~~~~----------------~~~~~~~~-~~~v~~i~~~~~--~~~~~~d--~~i~i~d~~~~~~-~~~~~ 130 (342)
..+.|+|||+... +++.++.. ...=++++|+|- +.++.+| +.|++|...++.= +....
T Consensus 173 e~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~P 252 (440)
T KOG0302|consen 173 ENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRP 252 (440)
T ss_pred ccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccCccccceEeeeeccCceeecCcc
Confidence 4789999998532 22333332 224577888873 2233333 5899999877531 11111
Q ss_pred CCCCCceEEEEeeCCCc-cEEEEeCCCCccEEEEEEccCCc---eeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEE
Q 019349 131 TVPNLKGLCAFSPSLNA-CFLAVPASTTKGSVLVYNVMELH---SHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRV 206 (342)
Q Consensus 131 ~~~~~~~~~~~~~~~~~-~~l~~~~~~~~g~i~iwd~~~~~---~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irl 206 (342)
.-.+...+-.+.++|.. ..+|+++ -||+|+|||++.+. ++ ..++|.+.|+.|.|+.+-.+||+|++||+ ++|
T Consensus 253 f~gH~~SVEDLqWSptE~~vfaScS--~DgsIrIWDiRs~~~~~~~-~~kAh~sDVNVISWnr~~~lLasG~DdGt-~~i 328 (440)
T KOG0302|consen 253 FTGHTKSVEDLQWSPTEDGVFASCS--CDGSIRIWDIRSGPKKAAV-STKAHNSDVNVISWNRREPLLASGGDDGT-LSI 328 (440)
T ss_pred ccccccchhhhccCCccCceEEeee--cCceEEEEEecCCCcccee-EeeccCCceeeEEccCCcceeeecCCCce-EEE
Confidence 12233455566666643 3566666 58999999999883 33 34899999999999999889999999998 599
Q ss_pred EEcCC---CeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCC
Q 019349 207 FLVSE---ATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAIN 261 (342)
Q Consensus 207 wd~~~---~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~ 261 (342)
||+++ ++.+..|.. |.++|+++.|+|... ..|++++.|+.|.|||+.....
T Consensus 329 wDLR~~~~~~pVA~fk~--Hk~pItsieW~p~e~--s~iaasg~D~QitiWDlsvE~D 382 (440)
T KOG0302|consen 329 WDLRQFKSGQPVATFKY--HKAPITSIEWHPHED--SVIAASGEDNQITIWDLSVEAD 382 (440)
T ss_pred EEhhhccCCCcceeEEe--ccCCeeEEEeccccC--ceEEeccCCCcEEEEEeeccCC
Confidence 99975 567778864 467799999999765 3899999999999999976543
No 130
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.82 E-value=1e-17 Score=153.16 Aligned_cols=277 Identities=12% Similarity=0.136 Sum_probs=190.1
Q ss_pred CeEEEEEcCCCCEEEEEcCC-cEEEEeCCCCcEE---EE--EeeCCEEEEEEcC-----------CCCeEEEEcCCCCCC
Q 019349 9 PVFFVSFNQDNSGFALSTKD-GFKIFDSSTGRLC---YE--RAVGAFSIVEMLY-----------SSSLLAIVGAGEQPS 71 (342)
Q Consensus 9 ~V~~l~fs~d~~~la~g~~~-g~~v~d~~~~~~~---~~--~~~~~~~~~~~~~-----------~~~~~~~~~~g~~~~ 71 (342)
.-.++.|++....|.+-.+| .+.|||+..-... +. .|...+--++..+ ....+.+++
T Consensus 326 D~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCS------ 399 (1080)
T KOG1408|consen 326 DAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCS------ 399 (1080)
T ss_pred ceeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEec------
Confidence 34578999988888776554 6899998654221 11 1111111122111 112344555
Q ss_pred CCCCeEEEEECCCCc--EE-----EE-----E--------------------------ecCCceEEEEEcCCeEEEEE--
Q 019349 72 LSPRRLCLFNTTTGT--AL-----RE-----L--------------------------NFLTSILAVRLNKKRLVIVL-- 111 (342)
Q Consensus 72 ~~d~~i~iwd~~~~~--~~-----~~-----~--------------------------~~~~~v~~i~~~~~~~~~~~-- 111 (342)
.|++|++||+..+. .+ .+ + .....+++++++|++..+++
T Consensus 400 -sD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGD 478 (1080)
T KOG1408|consen 400 -SDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGD 478 (1080)
T ss_pred -CCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccC
Confidence 49999999987521 01 00 0 00125789999999888877
Q ss_pred -CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCC---CccEEEEeCCCCccEEEEEEccCC-ceeEEEecccCCeeE--
Q 019349 112 -REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSL---NACFLAVPASTTKGSVLVYNVMEL-HSHCEIDAHQAPLAA-- 184 (342)
Q Consensus 112 -d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~g~i~iwd~~~~-~~~~~~~~h~~~v~~-- 184 (342)
.|.++||++...+....++.|.. .+.|+.++- ...+||+++ .|.-|+|||+... .+++++.+|.+.|++
T Consensus 479 r~GnlrVy~Lq~l~~~~~~eAHes--EilcLeyS~p~~~~kLLASas--rdRlIHV~Dv~rny~l~qtld~HSssITsvK 554 (1080)
T KOG1408|consen 479 RGGNLRVYDLQELEYTCFMEAHES--EILCLEYSFPVLTNKLLASAS--RDRLIHVYDVKRNYDLVQTLDGHSSSITSVK 554 (1080)
T ss_pred ccCceEEEEehhhhhhhheecccc--eeEEEeecCchhhhHhhhhcc--CCceEEEEecccccchhhhhcccccceeEEE
Confidence 46999999999888777776655 456665542 346788777 5899999998543 345556666665555
Q ss_pred -----------------------------------------------EEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEE
Q 019349 185 -----------------------------------------------IVLSSNGMYIATASEQGTIIRVFLVSEATKSYS 217 (342)
Q Consensus 185 -----------------------------------------------i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~ 217 (342)
|++.|..+++++++.|.. |||||+.+|+..+.
T Consensus 555 Fa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrn-irif~i~sgKq~k~ 633 (1080)
T KOG1408|consen 555 FACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRN-IRIFDIESGKQVKS 633 (1080)
T ss_pred EeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccc-eEEEeccccceeee
Confidence 555666778888888876 69999999999999
Q ss_pred eccCcC-ceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeecc
Q 019349 218 FRRGTY-PSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAF 296 (342)
Q Consensus 218 ~~~~~~-~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (342)
|+.... .+...-+...|.+- |||+.+.|.++.++|.-.++...+ ..+|..+++.+
T Consensus 634 FKgs~~~eG~lIKv~lDPSgi---Y~atScsdktl~~~Df~sgEcvA~---------------------m~GHsE~VTG~ 689 (1080)
T KOG1408|consen 634 FKGSRDHEGDLIKVILDPSGI---YLATSCSDKTLCFVDFVSGECVAQ---------------------MTGHSEAVTGV 689 (1080)
T ss_pred ecccccCCCceEEEEECCCcc---EEEEeecCCceEEEEeccchhhhh---------------------hcCcchheeee
Confidence 975432 24566788999998 999999999999999877765332 22334445555
Q ss_pred CCCccccEEEEEEeCCcEEEEEEec
Q 019349 297 PAGVKRASVSVITYNGYFVEYIFSI 321 (342)
Q Consensus 297 ~~~~~~~~l~~~~~dg~v~~~~~~~ 321 (342)
.|.++-+.|+++++||-|.+|.+..
T Consensus 690 kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 690 KFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred eecccchhheeecCCceEEEEECch
Confidence 6666778999999999999999853
No 131
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=3.7e-17 Score=148.73 Aligned_cols=242 Identities=15% Similarity=0.158 Sum_probs=176.1
Q ss_pred eCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEEE-EEec--CCceEEEEEcCC-eEEEEE-CCeEEEEEC
Q 019349 46 VGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALR-ELNF--LTSILAVRLNKK-RLVIVL-REKTYIYDA 120 (342)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~-~~~~--~~~v~~i~~~~~-~~~~~~-d~~i~i~d~ 120 (342)
..++..+++...++.+|+.- .++.|.+|++..+=... .+.. ...|.+++|.+. +++.+. ++.|.-||+
T Consensus 25 Ps~I~slA~s~kS~~lAvsR-------t~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl 97 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAVSR-------TDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDL 97 (691)
T ss_pred ccceEEEEEeccCCceeeec-------cCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCCeEEeecCCceEEEEec
Confidence 35666677777778877664 48999999998764332 2332 348999999854 455555 889999999
Q ss_pred CCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCcee--EEEecccCCeeEEEECCCCCEEEEEe
Q 019349 121 NTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSH--CEIDAHQAPLAAIVLSSNGMYIATAS 198 (342)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~--~~~~~h~~~v~~i~~s~dg~~lat~s 198 (342)
.+++....++. +...+.+++.+|.+..++.+. .||.+..++...++.. ..+...++.|.+++|+|++..||+||
T Consensus 98 ~~lk~~~~~d~--~gg~IWsiai~p~~~~l~Igc--ddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs 173 (691)
T KOG2048|consen 98 HTLKQKYNIDS--NGGAIWSIAINPENTILAIGC--DDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGS 173 (691)
T ss_pred ccCceeEEecC--CCcceeEEEeCCccceEEeec--CCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecc
Confidence 99988877754 344688888888887887775 5897777777766543 34555678999999999999999999
Q ss_pred CCCcEEEEEEcCCCeeEEEeccC-----c-CceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCccccc
Q 019349 199 EQGTIIRVFLVSEATKSYSFRRG-----T-YPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSIL 272 (342)
Q Consensus 199 ~dg~~irlwd~~~~~~~~~~~~~-----~-~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~ 272 (342)
.||. ||+||+.+++.++....+ . .+.-|+++.|-.|+. |++|.+.|+|++||...+...++
T Consensus 174 ~Dg~-Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~t----I~sgDS~G~V~FWd~~~gTLiqS-------- 240 (691)
T KOG2048|consen 174 IDGV-IRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDST----IASGDSAGTVTFWDSIFGTLIQS-------- 240 (691)
T ss_pred cCce-EEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCc----EEEecCCceEEEEcccCcchhhh--------
Confidence 9995 799999999877632211 1 234489999988885 99999999999999877654331
Q ss_pred cccccccccccccccccceeeeccCCCccccEEEEEEeCCcEEEEEEecCCC
Q 019349 273 GSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSINNC 324 (342)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~~~~~~~ 324 (342)
+.. |..-+..++...+.+++++++.|+.+..|.....+.
T Consensus 241 --~~~-----------h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~ 279 (691)
T KOG2048|consen 241 --HSC-----------HDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKS 279 (691)
T ss_pred --hhh-----------hhcceeEEEEcCCCCeEEEccCCCceEEEEecCCcc
Confidence 100 001112223344458999999999999999877654
No 132
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.82 E-value=2.2e-18 Score=149.65 Aligned_cols=234 Identities=10% Similarity=0.112 Sum_probs=156.3
Q ss_pred CCCEEEEEcCCc-EEEEeCCCCc---EEEEE------------------eeCCEEEEEEcCCCC-eEEEEcCCCCCCCCC
Q 019349 18 DNSGFALSTKDG-FKIFDSSTGR---LCYER------------------AVGAFSIVEMLYSSS-LLAIVGAGEQPSLSP 74 (342)
Q Consensus 18 d~~~la~g~~~g-~~v~d~~~~~---~~~~~------------------~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~d 74 (342)
-|+++|+|+-+. +.|||++-.. ..+.+ ..+.-++..+.++.. .-++++++ .|
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgs-----aD 265 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGS-----AD 265 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecC-----CC
Confidence 467999998876 6999975321 00110 011111222333221 12344442 69
Q ss_pred CeEEEEECCCCcEEEEEec-CCceEEEEEcCCe---EEEEE-CCeEEEEECCCCc-eeeEEeCCCCCceEEEEeeCCCcc
Q 019349 75 RRLCLFNTTTGTALRELNF-LTSILAVRLNKKR---LVIVL-REKTYIYDANTLA-ILDTIDTVPNLKGLCAFSPSLNAC 148 (342)
Q Consensus 75 ~~i~iwd~~~~~~~~~~~~-~~~v~~i~~~~~~---~~~~~-d~~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 148 (342)
++|++||+.++++..++.+ ..+|.++.|++.. ++..+ |+++.++|.+... .-..+..... +--+.+++...
T Consensus 266 ~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~---VEkv~w~~~se 342 (463)
T KOG0270|consen 266 KTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGE---VEKVAWDPHSE 342 (463)
T ss_pred ceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccc---eEEEEecCCCc
Confidence 9999999999999999985 4599999998763 33333 8999999998532 2222322222 33344444444
Q ss_pred EEEEeCCCCccEEEEEEccCC-ceeEEEecccCCeeEEEECCC-CCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCcee
Q 019349 149 FLAVPASTTKGSVLVYNVMEL-HSHCEIDAHQAPLAAIVLSSN-GMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPST 226 (342)
Q Consensus 149 ~l~~~~~~~~g~i~iwd~~~~-~~~~~~~~h~~~v~~i~~s~d-g~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~ 226 (342)
..+.++. .||+|+-+|+++. +++.++++|.++|.+|++++. -.+|+|+|.|+. +++|++..-..-....+...-+.
T Consensus 343 ~~f~~~t-ddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~-Vklw~~~~~~~~~v~~~~~~~~r 420 (463)
T KOG0270|consen 343 NSFFVST-DDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKV-VKLWKFDVDSPKSVKEHSFKLGR 420 (463)
T ss_pred eeEEEec-CCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccce-EEEEeecCCCCcccccccccccc
Confidence 4444444 6999999999876 899999999999999999874 468999999986 59999864332111111112234
Q ss_pred EEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCC
Q 019349 227 IFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQR 263 (342)
Q Consensus 227 v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~ 263 (342)
..|.++.|+-.+ +||.|+..+.++|||+.+..+.+
T Consensus 421 l~c~~~~~~~a~--~la~GG~k~~~~vwd~~~~~~V~ 455 (463)
T KOG0270|consen 421 LHCFALDPDVAF--TLAFGGEKAVLRVWDIFTNSPVR 455 (463)
T ss_pred eeecccCCCcce--EEEecCccceEEEeecccChhHH
Confidence 788899998875 88999999999999998776544
No 133
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.82 E-value=5.3e-18 Score=147.90 Aligned_cols=221 Identities=16% Similarity=0.198 Sum_probs=162.1
Q ss_pred CCCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcEEEE--EeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEE
Q 019349 5 SSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYE--RAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFN 81 (342)
Q Consensus 5 ~~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd 81 (342)
.|...|.+++.|+||++||+|..+- +.||++++.+.+.. .|-+.+..+++....+-+..++. |++|++|+
T Consensus 200 ~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~-------Drsvkvw~ 272 (479)
T KOG0299|consen 200 GHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASA-------DRSVKVWS 272 (479)
T ss_pred cccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeec-------CCceEEEe
Confidence 4667899999999999999998877 58999999865543 45566777777777776666654 99999999
Q ss_pred CCCCcEEEE-EecCCceEEEEE-cCCeEEEEE--CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCC
Q 019349 82 TTTGTALRE-LNFLTSILAVRL-NKKRLVIVL--REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTT 157 (342)
Q Consensus 82 ~~~~~~~~~-~~~~~~v~~i~~-~~~~~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 157 (342)
+.....+.+ +.++..|.+|.. +..+.+.+. |.++++|++.....+ .+..+......++|- .+ ..+++++ .
T Consensus 273 ~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesql-ifrg~~~sidcv~~I--n~-~HfvsGS--d 346 (479)
T KOG0299|consen 273 IDQLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQL-IFRGGEGSIDCVAFI--ND-EHFVSGS--D 346 (479)
T ss_pred hhHhHHHHHHhCCccceeeechhcccceEEeccccceeEEEecccccee-eeeCCCCCeeeEEEe--cc-cceeecc--C
Confidence 987766655 456778888876 445555554 889999999544222 233333222333332 22 3566666 6
Q ss_pred ccEEEEEEccCCceeEEEe-ccc-----------CCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCC----eeEEEeccC
Q 019349 158 KGSVLVYNVMELHSHCEID-AHQ-----------APLAAIVLSSNGMYIATASEQGTIIRVFLVSEA----TKSYSFRRG 221 (342)
Q Consensus 158 ~g~i~iwd~~~~~~~~~~~-~h~-----------~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~----~~~~~~~~~ 221 (342)
+|.|.+|++.+.+++.+.. +|. ..|++++..|..+++|+||.+|. +|||-+.++ ++++.+.
T Consensus 347 nG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~-vrLW~i~~g~r~i~~l~~ls-- 423 (479)
T KOG0299|consen 347 NGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGC-VRLWKIEDGLRAINLLYSLS-- 423 (479)
T ss_pred CceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCc-eEEEEecCCccccceeeecc--
Confidence 9999999999988876653 232 27899999999999999999997 599999887 3445543
Q ss_pred cCceeEEEEEEecCCCcccEEEEE
Q 019349 222 TYPSTIFSLSFGQSMQFQDILVAT 245 (342)
Q Consensus 222 ~~~~~v~~l~fs~d~~~~~~l~~~ 245 (342)
-.+-|++|+|+++++ +|++|
T Consensus 424 -~~GfVNsl~f~~sgk---~ivag 443 (479)
T KOG0299|consen 424 -LVGFVNSLAFSNSGK---RIVAG 443 (479)
T ss_pred -cccEEEEEEEccCCC---EEEEe
Confidence 245699999999998 77776
No 134
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.81 E-value=1.3e-18 Score=158.88 Aligned_cols=240 Identities=12% Similarity=0.199 Sum_probs=176.0
Q ss_pred CCCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcEEE--EEeeCCEEEEEEcCCC-CeEEEEcCCCCCCCCCCeEEEE
Q 019349 5 SSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCY--ERAVGAFSIVEMLYSS-SLLAIVGAGEQPSLSPRRLCLF 80 (342)
Q Consensus 5 ~~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~d~~i~iw 80 (342)
.+.-.+++++.+|+|++||+|.-.| +|||++...+... +.|...+.+++..+.. ..-++++++ .|+-|+++
T Consensus 457 d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASas-----rdRlIHV~ 531 (1080)
T KOG1408|consen 457 DSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASAS-----RDRLIHVY 531 (1080)
T ss_pred CcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhcc-----CCceEEEE
Confidence 3445799999999999999998777 7999998876543 3444555555554432 111233332 58999999
Q ss_pred ECCCCc-EEEEEec-CCceEEEEEcCCe----EEEEE-CCeEEEEECCC-CceeeEEeCCC---CCceEEEEeeCCCccE
Q 019349 81 NTTTGT-ALRELNF-LTSILAVRLNKKR----LVIVL-REKTYIYDANT-LAILDTIDTVP---NLKGLCAFSPSLNACF 149 (342)
Q Consensus 81 d~~~~~-~~~~~~~-~~~v~~i~~~~~~----~~~~~-d~~i~i~d~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 149 (342)
|+...- .+.++.. .+.|+++.|-... ++.++ |..|. |+... ......+..+. ....+..+..+|...+
T Consensus 532 Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksim-Fr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~ 610 (1080)
T KOG1408|consen 532 DVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIM-FRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKL 610 (1080)
T ss_pred ecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhh-eehhccccCceeccccccccccceEEEeeeCCCcce
Confidence 987653 4455654 5589999985432 33333 44444 44322 11111222222 1245778888888889
Q ss_pred EEEeCCCCccEEEEEEccCCceeEEEec---ccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCcee
Q 019349 150 LAVPASTTKGSVLVYNVMELHSHCEIDA---HQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPST 226 (342)
Q Consensus 150 l~~~~~~~~g~i~iwd~~~~~~~~~~~~---h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~ 226 (342)
+++++ +|..|+|||+.+++.++.|++ |++....+...|.|.||||.+.|.++ .++|..+|+++.++..+ ...
T Consensus 611 v~t~c--QDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl-~~~Df~sgEcvA~m~GH--sE~ 685 (1080)
T KOG1408|consen 611 VVTVC--QDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTL-CFVDFVSGECVAQMTGH--SEA 685 (1080)
T ss_pred EEEEe--cccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCce-EEEEeccchhhhhhcCc--chh
Confidence 99888 799999999999999999975 77788889999999999999999885 79999999999888543 445
Q ss_pred EEEEEEecCCCcccEEEEEeCCCcEEEEecCC
Q 019349 227 IFSLSFGQSMQFQDILVATSSSGSLHVFSPGF 258 (342)
Q Consensus 227 v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~ 258 (342)
|+.|.|.+|-+ .|++.+.||.|.||.+..
T Consensus 686 VTG~kF~nDCk---HlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 686 VTGVKFLNDCK---HLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred eeeeeecccch---hheeecCCceEEEEECch
Confidence 99999999999 999999999999999754
No 135
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.81 E-value=4.6e-17 Score=135.55 Aligned_cols=241 Identities=20% Similarity=0.266 Sum_probs=164.8
Q ss_pred CCCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCc----EE--EEEeeCCEEEEEEcCCC--CeEEEEcCCCCCCCCCC
Q 019349 5 SSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGR----LC--YERAVGAFSIVEMLYSS--SLLAIVGAGEQPSLSPR 75 (342)
Q Consensus 5 ~~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~----~~--~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~d~ 75 (342)
.+..-|.++.|++-|+.+|+++.|+ ++|||..... .. ...+.+.+-.+.+++.. +.+|.++ .|+
T Consensus 11 ~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS-------~Dr 83 (361)
T KOG2445|consen 11 GHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCS-------YDR 83 (361)
T ss_pred CCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEe-------cCC
Confidence 4556699999999999999998776 7999964432 21 23355677777777764 5666666 499
Q ss_pred eEEEEECCCC-------cEEE--EE-ecCCceEEEEEcCCe--EEEEE---CCeEEEEECCCCc------eeeEEe----
Q 019349 76 RLCLFNTTTG-------TALR--EL-NFLTSILAVRLNKKR--LVIVL---REKTYIYDANTLA------ILDTID---- 130 (342)
Q Consensus 76 ~i~iwd~~~~-------~~~~--~~-~~~~~v~~i~~~~~~--~~~~~---d~~i~i~d~~~~~------~~~~~~---- 130 (342)
++.||.-... +.+. ++ .-.+.|++|+|.|.+ +.++. ||.++||+.-+.- ++++++
T Consensus 84 tv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~ 163 (361)
T KOG2445|consen 84 TVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVID 163 (361)
T ss_pred ceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccC
Confidence 9999985211 1122 11 235689999998864 33333 9999999886542 333332
Q ss_pred CC-CCCceEEEEeeCCC---ccEEEEeCCC---CccEEEEEEccCCc----eeEEEecccCCeeEEEECCCC----CEEE
Q 019349 131 TV-PNLKGLCAFSPSLN---ACFLAVPAST---TKGSVLVYNVMELH----SHCEIDAHQAPLAAIVLSSNG----MYIA 195 (342)
Q Consensus 131 ~~-~~~~~~~~~~~~~~---~~~l~~~~~~---~~g~i~iwd~~~~~----~~~~~~~h~~~v~~i~~s~dg----~~la 195 (342)
.+ .+.....|+++++. ..+||.+... .-+.+.||...... .+..+..|..+|+.|+|.|+- .+||
T Consensus 164 pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lA 243 (361)
T KOG2445|consen 164 PPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLA 243 (361)
T ss_pred CcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEE
Confidence 11 12233456666653 3466666421 12478999764432 456678999999999999963 5799
Q ss_pred EEeCCCcEEEEEEcCCC--------------------eeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEe
Q 019349 196 TASEQGTIIRVFLVSEA--------------------TKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFS 255 (342)
Q Consensus 196 t~s~dg~~irlwd~~~~--------------------~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd 255 (342)
+|+.|| ||||.+... +++.++. .|.++|..+.|+-.|. .|++++.||.|++|.
T Consensus 244 vA~kDg--v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~--~H~~~VWrv~wNmtGt---iLsStGdDG~VRLWk 316 (361)
T KOG2445|consen 244 VATKDG--VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELD--DHNGEVWRVRWNMTGT---ILSSTGDDGCVRLWK 316 (361)
T ss_pred EeecCc--EEEEEEeeccchhhhhcccCCCCccccceEEeeecc--CCCCceEEEEEeeeee---EEeecCCCceeeehh
Confidence 999999 599998731 1233332 3467899999999999 999999999999997
Q ss_pred cCCC
Q 019349 256 PGFA 259 (342)
Q Consensus 256 ~~~~ 259 (342)
....
T Consensus 317 any~ 320 (361)
T KOG2445|consen 317 ANYN 320 (361)
T ss_pred hhhh
Confidence 6543
No 136
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.81 E-value=3e-17 Score=144.75 Aligned_cols=300 Identities=12% Similarity=0.130 Sum_probs=199.0
Q ss_pred CCCCCeEEEEEcCCCCEEEEEcCCc---------EEEEeCCCCcEEEEEe--eCCEEEEEEcCC--CCeEEEEcCCCCCC
Q 019349 5 SSSYPVFFVSFNQDNSGFALSTKDG---------FKIFDSSTGRLCYERA--VGAFSIVEMLYS--SSLLAIVGAGEQPS 71 (342)
Q Consensus 5 ~~~~~V~~l~fs~d~~~la~g~~~g---------~~v~d~~~~~~~~~~~--~~~~~~~~~~~~--~~~~~~~~~g~~~~ 71 (342)
.|...|.|++.+||--.+++|-..+ +|+||..+-.-++... ..++.++++... ++.++.+..+
T Consensus 102 GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s---- 177 (626)
T KOG2106|consen 102 GHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVDDS---- 177 (626)
T ss_pred CCCCceEEEeecCCceeeccCcccccCCCcCCCeeeecccccceeeeeeccccccceeeeecccCCCceEEEecCC----
Confidence 5778899999999988888663322 6999976654443332 356666666543 3566666553
Q ss_pred CCCCeEEEEECCCCcEEEEEecC-CceEEEEEcCC---eEEEEECCeEEEEECCCCceeeEE---eCCCCCceEEEEeeC
Q 019349 72 LSPRRLCLFNTTTGTALRELNFL-TSILAVRLNKK---RLVIVLREKTYIYDANTLAILDTI---DTVPNLKGLCAFSPS 144 (342)
Q Consensus 72 ~~d~~i~iwd~~~~~~~~~~~~~-~~v~~i~~~~~---~~~~~~d~~i~i~d~~~~~~~~~~---~~~~~~~~~~~~~~~ 144 (342)
.+..+-+||...+......... ..|....|+|. .++....+.+++|+.+.+.+.+.. +.+.. ..+.++++.
T Consensus 178 -~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ek-k~Vl~v~F~ 255 (626)
T KOG2106|consen 178 -NPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREK-KFVLCVTFL 255 (626)
T ss_pred -CccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccc-eEEEEEEEc
Confidence 5778999999988877766644 46677888774 333444779999999988666543 33333 677888888
Q ss_pred CCccEEEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEec-----
Q 019349 145 LNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFR----- 219 (342)
Q Consensus 145 ~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~----- 219 (342)
+++..+ ++. .+|.|.||+..+.+..+...+|.+.|.+++.-.+|.+| +|+.|..++ .||- .-+++.+..
T Consensus 256 engdvi-TgD--S~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gtll-SGgKDRki~-~Wd~-~y~k~r~~elPe~~ 329 (626)
T KOG2106|consen 256 ENGDVI-TGD--SGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLL-SGGKDRKII-LWDD-NYRKLRETELPEQF 329 (626)
T ss_pred CCCCEE-eec--CCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEe-ecCccceEE-eccc-cccccccccCchhc
Confidence 887655 455 58999999998888777777999999999999998755 599998765 9983 222211110
Q ss_pred ----------------------------cC------cCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCC--C
Q 019349 220 ----------------------------RG------TYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQ--R 263 (342)
Q Consensus 220 ----------------------------~~------~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~--~ 263 (342)
.+ .+..+...++.+|+.. .|++++.|+.+++|+ + .+.+ +
T Consensus 330 G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~---q~~T~gqdk~v~lW~-~-~k~~wt~ 404 (626)
T KOG2106|consen 330 GPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKN---QLLTCGQDKHVRLWN-D-HKLEWTK 404 (626)
T ss_pred CCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChh---heeeccCcceEEEcc-C-CceeEEE
Confidence 00 1122467899999988 999999999999999 2 1111 0
Q ss_pred CCCCccccccccccccc------cccccc---cc--------cceeeeccCCCccccEEEEEEeCCcEEEEEEecC
Q 019349 264 RGGRTSSILGSILPESV------NEVLDP---AD--------HHVLRNAFPAGVKRASVSVITYNGYFVEYIFSIN 322 (342)
Q Consensus 264 ~~~~~~~~~~~~~~~~~------~~~~~~---~~--------~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~~~~~ 322 (342)
....+.. -..+.|..+ ...|-. .. .......+.+.|++..|++++.|+.||+|.++..
T Consensus 405 ~~~d~~~-~~~fhpsg~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~ 479 (626)
T KOG2106|consen 405 IIEDPAE-CADFHPSGVVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSAN 479 (626)
T ss_pred EecCcee-EeeccCcceEEEeeccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCC
Confidence 0011111 011111111 111111 11 0112345677888999999999999999998753
No 137
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.81 E-value=3.6e-19 Score=156.69 Aligned_cols=215 Identities=13% Similarity=0.124 Sum_probs=156.6
Q ss_pred CCeEEEEECCCC---cEEEEEec---CCceEEEEEcCCeEEEEE---CCeEEEEECCCCceeeEEeCCCCCceEEEEeeC
Q 019349 74 PRRLCLFNTTTG---TALRELNF---LTSILAVRLNKKRLVIVL---REKTYIYDANTLAILDTIDTVPNLKGLCAFSPS 144 (342)
Q Consensus 74 d~~i~iwd~~~~---~~~~~~~~---~~~v~~i~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (342)
.+-|+|||+... .++..+.. ...|+++.+.++...+.. -.++.|||+......-..+.........+++.+
T Consensus 439 kgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~s 518 (705)
T KOG0639|consen 439 KGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAIS 518 (705)
T ss_pred CCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcC
Confidence 679999998643 23444332 457889998887644433 348999999876443333333333456678888
Q ss_pred CCccEEEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCc
Q 019349 145 LNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYP 224 (342)
Q Consensus 145 ~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~ 224 (342)
||....+++. .||.|.|||+.+...++.|++|.+.+.||.+++||..|-||+-|.+ +|-||++++..+.+. ...
T Consensus 519 pDakvcFscc--sdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDnt-vRcWDlregrqlqqh---dF~ 592 (705)
T KOG0639|consen 519 PDAKVCFSCC--SDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNT-VRCWDLREGRQLQQH---DFS 592 (705)
T ss_pred Cccceeeeec--cCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccc-eeehhhhhhhhhhhh---hhh
Confidence 8887776666 5899999999999999999999999999999999999999999998 599999999876543 334
Q ss_pred eeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccE
Q 019349 225 STIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRAS 304 (342)
Q Consensus 225 ~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (342)
..|.+|..+|.+. +||+|-+++.+.|-....+.+-.- ..+..|+-+ +.|..-+..
T Consensus 593 SQIfSLg~cP~~d---WlavGMens~vevlh~skp~kyql------------hlheScVLS----------lKFa~cGkw 647 (705)
T KOG0639|consen 593 SQIFSLGYCPTGD---WLAVGMENSNVEVLHTSKPEKYQL------------HLHESCVLS----------LKFAYCGKW 647 (705)
T ss_pred hhheecccCCCcc---ceeeecccCcEEEEecCCccceee------------cccccEEEE----------EEecccCce
Confidence 5699999999998 999999999998887665543211 011112222 222333467
Q ss_pred EEEEEeCCcEEEEEE
Q 019349 305 VSVITYNGYFVEYIF 319 (342)
Q Consensus 305 l~~~~~dg~v~~~~~ 319 (342)
.++.+.|..+..|..
T Consensus 648 fvStGkDnlLnawrt 662 (705)
T KOG0639|consen 648 FVSTGKDNLLNAWRT 662 (705)
T ss_pred eeecCchhhhhhccC
Confidence 777888888887764
No 138
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=1.9e-18 Score=139.53 Aligned_cols=240 Identities=11% Similarity=0.122 Sum_probs=168.2
Q ss_pred EEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCc---EEEEEe-cCCceEEEEEcC-C-e--EEEEE-CCeEEEEECCC
Q 019349 52 VEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGT---ALRELN-FLTSILAVRLNK-K-R--LVIVL-REKTYIYDANT 122 (342)
Q Consensus 52 ~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~---~~~~~~-~~~~v~~i~~~~-~-~--~~~~~-d~~i~i~d~~~ 122 (342)
+.+.+-+..+++++. |++|+|+..+.+. .+.++. +.++|..+.|.. . + ++.++ |++|.||.-.+
T Consensus 17 a~lDyygkrlATcsS-------D~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~ 89 (299)
T KOG1332|consen 17 AQLDYYGKRLATCSS-------DGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEEN 89 (299)
T ss_pred hhhhhhcceeeeecC-------CccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCC
Confidence 445566788888875 9999999997654 345554 456999999843 2 3 33344 99999999988
Q ss_pred Ccee--eEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCC-c--eeEEEecccCCeeEEEECCC---C---
Q 019349 123 LAIL--DTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMEL-H--SHCEIDAHQAPLAAIVLSSN---G--- 191 (342)
Q Consensus 123 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~-~--~~~~~~~h~~~v~~i~~s~d---g--- 191 (342)
++-. .....|......++++|+.-+..||+++ .||.|.|.+.++. . ......+|.-.|+++++.|- |
T Consensus 90 g~w~k~~e~~~h~~SVNsV~wapheygl~Lacas--SDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~ 167 (299)
T KOG1332|consen 90 GRWTKAYEHAAHSASVNSVAWAPHEYGLLLACAS--SDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLV 167 (299)
T ss_pred CchhhhhhhhhhcccceeecccccccceEEEEee--CCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCcccc
Confidence 7432 3334445555667777877788888887 5899999988654 2 23345689999999999986 5
Q ss_pred --------CEEEEEeCCCcEEEEEEcCCCeeEE--EeccCcCceeEEEEEEecCC-CcccEEEEEeCCCcEEEEecCCCC
Q 019349 192 --------MYIATASEQGTIIRVFLVSEATKSY--SFRRGTYPSTIFSLSFGQSM-QFQDILVATSSSGSLHVFSPGFAI 260 (342)
Q Consensus 192 --------~~lat~s~dg~~irlwd~~~~~~~~--~~~~~~~~~~v~~l~fs~d~-~~~~~l~~~s~dg~i~vwd~~~~~ 260 (342)
+.|++|+.|.. ++||+..+++-+. .++ .|..-|+.+||.|.- -.+.+||++|.||+|-||-.+...
T Consensus 168 ~~~~~~~~krlvSgGcDn~-VkiW~~~~~~w~~e~~l~--~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~ 244 (299)
T KOG1332|consen 168 DQGPAAKVKRLVSGGCDNL-VKIWKFDSDSWKLERTLE--GHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEY 244 (299)
T ss_pred ccCcccccceeeccCCccc-eeeeecCCcchhhhhhhh--hcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCcc
Confidence 67999999986 6999998874222 232 234569999999974 112389999999999999877332
Q ss_pred CCCCCCCccccccccccccccccccccccceeeeccCCCccccEEEEEEeCCcEEEEEEec
Q 019349 261 NQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSI 321 (342)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~~~~ 321 (342)
++- ....+..+........|++.+ +.|++.+.|..|.+|.-+.
T Consensus 245 e~w----k~tll~~f~~~~w~vSWS~sG--------------n~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 245 EPW----KKTLLEEFPDVVWRVSWSLSG--------------NILAVSGGDNKVTLWKENV 287 (299)
T ss_pred Ccc----cccccccCCcceEEEEEeccc--------------cEEEEecCCcEEEEEEeCC
Confidence 211 111122222233445666665 8899999999999996543
No 139
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.80 E-value=1.2e-17 Score=145.68 Aligned_cols=257 Identities=13% Similarity=0.085 Sum_probs=167.9
Q ss_pred eeCCEEEEEEcCCCC-eEEEEcCCCCCCCCCCeEEEEECCCCcEE----EEE-ecCCceEEEEEcCC---eEEEEE-CCe
Q 019349 45 AVGAFSIVEMLYSSS-LLAIVGAGEQPSLSPRRLCLFNTTTGTAL----REL-NFLTSILAVRLNKK---RLVIVL-REK 114 (342)
Q Consensus 45 ~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~d~~i~iwd~~~~~~~----~~~-~~~~~v~~i~~~~~---~~~~~~-d~~ 114 (342)
..+.+..+.+.+..+ .++.+|. ..++|-+||+.+.+.. .-+ .+..+|.++.|+|. .++.++ ||+
T Consensus 185 ~~~Rit~l~fHPt~~~~lva~Gd------K~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGt 258 (498)
T KOG4328|consen 185 TDRRITSLAFHPTENRKLVAVGD------KGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGT 258 (498)
T ss_pred cccceEEEEecccCcceEEEEcc------CCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCce
Confidence 457788888888877 4555554 5799999999633321 112 23458999999874 445554 999
Q ss_pred EEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCce-eEEEecccCCeeEEEECCC-CC
Q 019349 115 TYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHS-HCEIDAHQAPLAAIVLSSN-GM 192 (342)
Q Consensus 115 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~-~~~~~~h~~~v~~i~~s~d-g~ 192 (342)
|++-|++....-..+........++.+.++.+...+.+++ .=|...+||+++... ...+.-|+..|++|+++|- -.
T Consensus 259 iR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~--~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~ 336 (498)
T KOG4328|consen 259 IRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGD--NVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPW 336 (498)
T ss_pred eeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEee--cccceEEEEeecCCccchhhhhhhcccceeecCCCCch
Confidence 9999998764322222222334455555555555555555 357899999998765 5667789999999999994 56
Q ss_pred EEEEEeCCCcEEEEEEcCCCeeEEE--eccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecC---CCCCCCCCCC
Q 019349 193 YIATASEQGTIIRVFLVSEATKSYS--FRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPG---FAINQRRGGR 267 (342)
Q Consensus 193 ~lat~s~dg~~irlwd~~~~~~~~~--~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~---~~~~~~~~~~ 267 (342)
+|||||.|++. +|||++.-....+ +..-.|...|.+..|||++. .|++.+.|++|+|||.. ...++...-+
T Consensus 337 ~laT~s~D~T~-kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~g---tl~TT~~D~~IRv~dss~~sa~~~p~~~I~ 412 (498)
T KOG4328|consen 337 FLATASLDQTA-KIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGG---TLLTTCQDNEIRVFDSSCISAKDEPLGTIP 412 (498)
T ss_pred heeecccCcce-eeeehhhhcCCCCcceecccccceeeeeEEcCCCC---ceEeeccCCceEEeecccccccCCccceee
Confidence 79999999985 8999986433221 22223455699999999998 79999999999999984 2222221111
Q ss_pred ccccccccccccccccccccccceeeeccCCCccccEEEEEEeCCcEEEEEEecCCCCeeeeEE
Q 019349 268 TSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSINNCCESTWTL 331 (342)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~~~~~~~~~~~~~~ 331 (342)
+....+-++ ..+-.+|+|.. +.|+++-.-..|-+|+ .++++-+|.+
T Consensus 413 Hn~~t~Rwl-T~fKA~W~P~~--------------~li~vg~~~r~IDv~~---~~~~q~v~el 458 (498)
T KOG4328|consen 413 HNNRTGRWL-TPFKAAWDPDY--------------NLIVVGRYPRPIDVFD---GNGGQMVCEL 458 (498)
T ss_pred ccCcccccc-cchhheeCCCc--------------cEEEEeccCcceeEEc---CCCCEEeeec
Confidence 111111122 23456888855 6677776666666663 3445444543
No 140
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.80 E-value=2.2e-16 Score=146.77 Aligned_cols=274 Identities=15% Similarity=0.145 Sum_probs=189.2
Q ss_pred EEEcCCCC--EEEEEcCCcEEEEeCCCCcEEEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEEEE
Q 019349 13 VSFNQDNS--GFALSTKDGFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRE 90 (342)
Q Consensus 13 l~fs~d~~--~la~g~~~g~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~ 90 (342)
.+|..-++ ++.++-++.+.+||.+...+++.....+-.+.++.....++..+.+ +.|.+|- .|+.+..
T Consensus 39 ~~~~~~~~~~~vtt~vgksfqvYd~~kl~ll~vs~~lp~~I~alas~~~~vy~A~g--------~~i~~~~--rgk~i~~ 108 (910)
T KOG1539|consen 39 FRVVALGSTFYVTTCVGKSFQVYDVNKLNLLFVSKPLPDKITALASDKDYVYVASG--------NKIYAYA--RGKHIRH 108 (910)
T ss_pred eeeeecCceEEEEEecCceEEEEeccceEEEEecCCCCCceEEEEecCceEEEecC--------cEEEEEE--ccceEEE
Confidence 44444444 3455667778999999988887765545555566555566555543 5676664 4544433
Q ss_pred -Eec-CCceEEEEEcCCeEEEEE-CCeEEEEECCCCc-ee---eEEeCCCCCceEEEEee-CCCccEEEEeCCCCccEEE
Q 019349 91 -LNF-LTSILAVRLNKKRLVIVL-REKTYIYDANTLA-IL---DTIDTVPNLKGLCAFSP-SLNACFLAVPASTTKGSVL 162 (342)
Q Consensus 91 -~~~-~~~v~~i~~~~~~~~~~~-d~~i~i~d~~~~~-~~---~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~g~i~ 162 (342)
+.. ...|.-+..-++.++.+. ++.++||+..+++ .+ -.+....+ ..+.++.. +.--+.++.+. .+|.++
T Consensus 109 ~~~~~~a~v~~l~~fGe~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~-~~Ital~HP~TYLNKIvvGs--~~G~lq 185 (910)
T KOG1539|consen 109 TTLLHGAKVHLLLPFGEHLIAVDISNILFVWKTSSIQEELYLQSTFLKVEG-DFITALLHPSTYLNKIVVGS--SQGRLQ 185 (910)
T ss_pred EeccccceEEEEeeecceEEEEEccCcEEEEEeccccccccccceeeeccC-CceeeEecchhheeeEEEee--cCCcEE
Confidence 322 236777777777766666 8899999998741 11 11111112 22555443 22222344544 589999
Q ss_pred EEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEE
Q 019349 163 VYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDIL 242 (342)
Q Consensus 163 iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l 242 (342)
+|++++++.+.+++++.+.|+++.=+|--..+|.|..+|++| +++++.++.+.+|+. ..+.|++++|..||. +.|
T Consensus 186 l~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~Vi-ifNlK~dkil~sFk~--d~g~VtslSFrtDG~--p~l 260 (910)
T KOG1539|consen 186 LWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVI-IFNLKFDKILMSFKQ--DWGRVTSLSFRTDGN--PLL 260 (910)
T ss_pred EEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEE-EEEcccCcEEEEEEc--cccceeEEEeccCCC--eeE
Confidence 999999999999999999999999999889999999999975 999999999999963 247799999999998 588
Q ss_pred EEEeCCCcEEEEecCCCCCCCCCC-CccccccccccccccccccccccceeeeccCCCccccEEEEEEeCCcEEEEEEec
Q 019349 243 VATSSSGSLHVFSPGFAINQRRGG-RTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSI 321 (342)
Q Consensus 243 ~~~s~dg~i~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~~~~ 321 (342)
|+|+..|.+-+||++..+...... .+ .++ + ....|.+..+.+++.+.|..+++|-+|.
T Consensus 261 as~~~~G~m~~wDLe~kkl~~v~~nah---~~s--------v----------~~~~fl~~epVl~ta~~DnSlk~~vfD~ 319 (910)
T KOG1539|consen 261 ASGRSNGDMAFWDLEKKKLINVTRNAH---YGS--------V----------TGATFLPGEPVLVTAGADNSLKVWVFDS 319 (910)
T ss_pred EeccCCceEEEEEcCCCeeeeeeeccc---cCC--------c----------ccceecCCCceEeeccCCCceeEEEeeC
Confidence 888889999999998765432110 00 000 0 0111233346899999999999999996
Q ss_pred CCCC
Q 019349 322 NNCC 325 (342)
Q Consensus 322 ~~~~ 325 (342)
..+.
T Consensus 320 ~dg~ 323 (910)
T KOG1539|consen 320 GDGV 323 (910)
T ss_pred CCCc
Confidence 5553
No 141
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.79 E-value=2.8e-18 Score=146.21 Aligned_cols=188 Identities=11% Similarity=0.094 Sum_probs=131.0
Q ss_pred CCeEEEEECCC----------------CceeeEEeCCCCCceEEEEeeCCCcc-EEEEeCCCCccEEEEEEccCCce---
Q 019349 112 REKTYIYDANT----------------LAILDTIDTVPNLKGLCAFSPSLNAC-FLAVPASTTKGSVLVYNVMELHS--- 171 (342)
Q Consensus 112 d~~i~i~d~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~g~i~iwd~~~~~~--- 171 (342)
.|.|+||++.. .+.+.++..|.. .-++++++|-.. .|+++. -.+.|++|...++.=
T Consensus 174 ~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~--EGy~LdWSp~~~g~LlsGD--c~~~I~lw~~~~g~W~vd 249 (440)
T KOG0302|consen 174 NGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKG--EGYGLDWSPIKTGRLLSGD--CVKGIHLWEPSTGSWKVD 249 (440)
T ss_pred cCcEEEEEchhhhhhhcCccccccccccCceEEecccCc--cceeeecccccccccccCc--cccceEeeeeccCceeec
Confidence 67999999953 123444444433 234555555211 345544 357799999888652
Q ss_pred eEEEecccCCeeEEEECCC-CCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCc
Q 019349 172 HCEIDAHQAPLAAIVLSSN-GMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGS 250 (342)
Q Consensus 172 ~~~~~~h~~~v~~i~~s~d-g~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~ 250 (342)
...+.+|+..|..++|||. ...|||||.||+ |||||++.+.+...+....+.+.|+-|+|+.+.. +||+|++||+
T Consensus 250 ~~Pf~gH~~SVEDLqWSptE~~vfaScS~Dgs-IrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~---lLasG~DdGt 325 (440)
T KOG0302|consen 250 QRPFTGHTKSVEDLQWSPTEDGVFASCSCDGS-IRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREP---LLASGGDDGT 325 (440)
T ss_pred CccccccccchhhhccCCccCceEEeeecCce-EEEEEecCCCccceeEeeccCCceeeEEccCCcc---eeeecCCCce
Confidence 2456689999999999994 578999999998 6999999985443333345566799999999988 9999999999
Q ss_pred EEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEEEEEEeCCcEEEEEEecCCC
Q 019349 251 LHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSINNC 324 (342)
Q Consensus 251 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~~~~~~~ 324 (342)
++|||++..+.... -..+..+..+.....|+|.. ...|++++.|.++.+|++..+..
T Consensus 326 ~~iwDLR~~~~~~p----VA~fk~Hk~pItsieW~p~e-------------~s~iaasg~D~QitiWDlsvE~D 382 (440)
T KOG0302|consen 326 LSIWDLRQFKSGQP----VATFKYHKAPITSIEWHPHE-------------DSVIAASGEDNQITIWDLSVEAD 382 (440)
T ss_pred EEEEEhhhccCCCc----ceeEEeccCCeeEEEecccc-------------CceEEeccCCCcEEEEEeeccCC
Confidence 99999987654211 01111122233345677754 25789999999999999986654
No 142
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=1.1e-18 Score=167.08 Aligned_cols=245 Identities=10% Similarity=0.117 Sum_probs=182.8
Q ss_pred CCCCCeEEEEEcCCCCE----EEEEcCCc-EEEEeCCCC------cE--EEEEeeCCEEEEEEcCCCCeEEEEcCCCCCC
Q 019349 5 SSSYPVFFVSFNQDNSG----FALSTKDG-FKIFDSSTG------RL--CYERAVGAFSIVEMLYSSSLLAIVGAGEQPS 71 (342)
Q Consensus 5 ~~~~~V~~l~fs~d~~~----la~g~~~g-~~v~d~~~~------~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 71 (342)
+....-+.|+|.+.|.. ||.|.+|| +.+||.... .+ .+..|.+.+..+++......++ ++|+
T Consensus 62 ~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlL-ASGa---- 136 (1049)
T KOG0307|consen 62 QSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLL-ASGA---- 136 (1049)
T ss_pred cccccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCcee-eccC----
Confidence 44567889999998776 78888888 799997652 11 1344567777777665544333 3332
Q ss_pred CCCCeEEEEECCCCcEEEEE---ecCCceEEEEEcCCe--EEE-EE-CCeEEEEECCCCceeeEEeCCCCCceEEEEeeC
Q 019349 72 LSPRRLCLFNTTTGTALREL---NFLTSILAVRLNKKR--LVI-VL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPS 144 (342)
Q Consensus 72 ~~d~~i~iwd~~~~~~~~~~---~~~~~v~~i~~~~~~--~~~-~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (342)
+++.|.|||+.+-+.-... ...+.|.+++|++.. ++. ++ ++++-|||++..+.+-.+..+.....+..+.++
T Consensus 137 -~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~Wh 215 (1049)
T KOG0307|consen 137 -DDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWH 215 (1049)
T ss_pred -CCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeC
Confidence 5899999999875433332 346689999998863 222 22 679999999988777676655554445677788
Q ss_pred CCcc--EEEEeCCCCccEEEEEEccCC-ceeEEEecccCCeeEEEECCCC-CEEEEEeCCCcEEEEEEcCCCeeEEEecc
Q 019349 145 LNAC--FLAVPASTTKGSVLVYNVMEL-HSHCEIDAHQAPLAAIVLSSNG-MYIATASEQGTIIRVFLVSEATKSYSFRR 220 (342)
Q Consensus 145 ~~~~--~l~~~~~~~~g~i~iwd~~~~-~~~~~~~~h~~~v~~i~~s~dg-~~lat~s~dg~~irlwd~~~~~~~~~~~~ 220 (342)
|+.. .+++.+.+..-.|.+||++.. .+++.+++|...|.+|.|++.+ ++|+|++.|+++| +|+.++|+.+.++..
T Consensus 216 P~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii-~wN~~tgEvl~~~p~ 294 (1049)
T KOG0307|consen 216 PDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRII-CWNPNTGEVLGELPA 294 (1049)
T ss_pred CCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCee-EecCCCceEeeecCC
Confidence 7653 344444445578999999865 4677889999999999999966 8999999999976 999999999999965
Q ss_pred CcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCC
Q 019349 221 GTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAI 260 (342)
Q Consensus 221 ~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~ 260 (342)
. ..-+..+.|+|... +.+++++-||.|.||.+....
T Consensus 295 ~--~nW~fdv~w~pr~P--~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 295 Q--GNWCFDVQWCPRNP--SVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred C--CcceeeeeecCCCc--chhhhheeccceeeeeeecCC
Confidence 3 34588999999887 489999999999999997655
No 143
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.79 E-value=2.7e-17 Score=148.68 Aligned_cols=280 Identities=13% Similarity=0.115 Sum_probs=179.4
Q ss_pred EEEEEcCCC---CEEEEEcCCc-EEEEeCCCCcEE--------EEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEE
Q 019349 11 FFVSFNQDN---SGFALSTKDG-FKIFDSSTGRLC--------YERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLC 78 (342)
Q Consensus 11 ~~l~fs~d~---~~la~g~~~g-~~v~d~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~ 78 (342)
.+..|++-- ..||++.++| +.+||....... ...|...+--+.+.+....++.++| |.+++
T Consensus 53 f~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasG-------DsT~r 125 (720)
T KOG0321|consen 53 FADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASG-------DSTIR 125 (720)
T ss_pred ccccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccC-------Cceee
Confidence 667887633 3588999988 699997655322 1123344555566664445555555 89999
Q ss_pred EEECCCCcEEEE---EecCCceEEEEEcCCeEEE---EE-CCeEEEEECCCCc--eeeE--------EeC---CCC----
Q 019349 79 LFNTTTGTALRE---LNFLTSILAVRLNKKRLVI---VL-REKTYIYDANTLA--ILDT--------IDT---VPN---- 134 (342)
Q Consensus 79 iwd~~~~~~~~~---~~~~~~v~~i~~~~~~~~~---~~-d~~i~i~d~~~~~--~~~~--------~~~---~~~---- 134 (342)
+||+++++++.. +.+...|.+++|.+....+ .+ |+.|.|||++-.. .+.. ..+ +..
T Consensus 126 ~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~k 205 (720)
T KOG0321|consen 126 PWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKK 205 (720)
T ss_pred eeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhc
Confidence 999999988865 4566789999997754322 22 8999999995321 0000 011 100
Q ss_pred --------CceEEE---EeeCCCccEEEEeCCCCccEEEEEEccCCceeE--------EEecc---cCCeeEEEECCCCC
Q 019349 135 --------LKGLCA---FSPSLNACFLAVPASTTKGSVLVYNVMELHSHC--------EIDAH---QAPLAAIVLSSNGM 192 (342)
Q Consensus 135 --------~~~~~~---~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~--------~~~~h---~~~v~~i~~s~dg~ 192 (342)
...+.. +-...|...||++|. .|+.|+|||++...... .+.-| .-.+.++.....|.
T Consensus 206 r~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga-~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt 284 (720)
T KOG0321|consen 206 RIRKWKAASNTIFSSVTVVLFKDESTLASAGA-ADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGT 284 (720)
T ss_pred cccccccccCceeeeeEEEEEeccceeeeccC-CCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCC
Confidence 011111 223346678999986 69999999998765322 12223 33688888888899
Q ss_pred EEEEEeCCCcEEEEEEcCCCe--eEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCccc
Q 019349 193 YIATASEQGTIIRVFLVSEAT--KSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSS 270 (342)
Q Consensus 193 ~lat~s~dg~~irlwd~~~~~--~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~ 270 (342)
+|...+.|+++ ..|++.+-. .+..+.......--..-..+||+. +|++|+.|...++|.+.....+. .
T Consensus 285 ~L~AsCtD~sI-y~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~---~l~SgSsd~~ayiw~vs~~e~~~------~ 354 (720)
T KOG0321|consen 285 YLFASCTDNSI-YFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDC---SLLSGSSDEQAYIWVVSSPEAPP------A 354 (720)
T ss_pred eEEEEecCCcE-EEEeccccCcCchhhccCcccceeeeeeecCCCCc---eEeccCCCcceeeeeecCccCCh------h
Confidence 98888889985 599997643 223332111111111224689999 99999999999999998876543 1
Q ss_pred cccccccccccccccccccceeeeccCCCccccEEEEEEeCCcEEEEEEec
Q 019349 271 ILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSI 321 (342)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~~~~ 321 (342)
.+.++.-+.+...|.|... ..+++++.|-.+++|++..
T Consensus 355 ~l~Ght~eVt~V~w~pS~~-------------t~v~TcSdD~~~kiW~l~~ 392 (720)
T KOG0321|consen 355 LLLGHTREVTTVRWLPSAT-------------TPVATCSDDFRVKIWRLSN 392 (720)
T ss_pred hhhCcceEEEEEeeccccC-------------CCceeeccCcceEEEeccC
Confidence 1223333344556777542 4588889999999999843
No 144
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.79 E-value=1.2e-17 Score=139.65 Aligned_cols=179 Identities=13% Similarity=0.145 Sum_probs=134.7
Q ss_pred CCCeEEEEECCCCcEEEEEec-CCceEEEEEcCCeEEEEE---CCeEEEEEC----CCCcee--------eEEeC---C-
Q 019349 73 SPRRLCLFNTTTGTALRELNF-LTSILAVRLNKKRLVIVL---REKTYIYDA----NTLAIL--------DTIDT---V- 132 (342)
Q Consensus 73 ~d~~i~iwd~~~~~~~~~~~~-~~~v~~i~~~~~~~~~~~---d~~i~i~d~----~~~~~~--------~~~~~---~- 132 (342)
.|.+.+||.+++|.|+.++.. .+.|.+|+|++.++++.. |++..||.. +.++.. .+.+. +
T Consensus 168 ADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~ 247 (481)
T KOG0300|consen 168 ADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHN 247 (481)
T ss_pred cccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccc
Confidence 599999999999999999874 569999999998777655 789999972 111100 00000 0
Q ss_pred ----------------------CCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCC
Q 019349 133 ----------------------PNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSN 190 (342)
Q Consensus 133 ----------------------~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~d 190 (342)
.+...+.+..+-..+..+++++ .|.+..+||+++++++..+.+|....+.++-+|.
T Consensus 248 ~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaS--WDRTAnlwDVEtge~v~~LtGHd~ELtHcstHpt 325 (481)
T KOG0300|consen 248 RDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTAS--WDRTANLWDVETGEVVNILTGHDSELTHCSTHPT 325 (481)
T ss_pred cccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeee--ccccceeeeeccCceeccccCcchhccccccCCc
Confidence 0001122222323455666666 7899999999999999999999999999999999
Q ss_pred CCEEEEEeCCCcEEEEEEcCCC-eeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCC
Q 019349 191 GMYIATASEQGTIIRVFLVSEA-TKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAI 260 (342)
Q Consensus 191 g~~lat~s~dg~~irlwd~~~~-~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~ 260 (342)
-++++|+|.|.+ .|+||.+.. .-+..|+. +...|+++.|.-|.+ +++||+|.+|+|||++...
T Consensus 326 QrLVvTsSrDtT-FRLWDFReaI~sV~VFQG--HtdtVTS~vF~~dd~----vVSgSDDrTvKvWdLrNMR 389 (481)
T KOG0300|consen 326 QRLVVTSSRDTT-FRLWDFREAIQSVAVFQG--HTDTVTSVVFNTDDR----VVSGSDDRTVKVWDLRNMR 389 (481)
T ss_pred ceEEEEeccCce-eEeccchhhcceeeeecc--cccceeEEEEecCCc----eeecCCCceEEEeeecccc
Confidence 999999999976 699999853 33455653 355699999999886 9999999999999998654
No 145
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.78 E-value=1.5e-17 Score=146.30 Aligned_cols=240 Identities=17% Similarity=0.211 Sum_probs=163.1
Q ss_pred CCCCeEEEEEcCCCCEEEEEcCCc---EEEEeCC--CCcEEEEEee--CCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEE
Q 019349 6 SSYPVFFVSFNQDNSGFALSTKDG---FKIFDSS--TGRLCYERAV--GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLC 78 (342)
Q Consensus 6 ~~~~V~~l~fs~d~~~la~g~~~g---~~v~d~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~ 78 (342)
++..+.++.|+.... |++++..| +++|.-+ ++++...... ....++.+..-+ +..+++| ..+.|+
T Consensus 33 ~~pg~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s~S--~y~~sgG-----~~~~Vk 104 (673)
T KOG4378|consen 33 AEPGDFSFNWQRRNF-LVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACASQS--LYEISGG-----QSGCVK 104 (673)
T ss_pred CCCcceeeeccccce-EEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhhhcc--eeeeccC-----cCceee
Confidence 445599999998776 55444333 4788532 2222222111 111222222222 3445554 578999
Q ss_pred EEECCCCcEEEEEe-cCCceEEEEEcCCe--EEEEE-CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeC
Q 019349 79 LFNTTTGTALRELN-FLTSILAVRLNKKR--LVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPA 154 (342)
Q Consensus 79 iwd~~~~~~~~~~~-~~~~v~~i~~~~~~--~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 154 (342)
|||++...+...+. +.+.|+++..+... ++.+. .|.|.|..+.++..-..+....+ ..+--+.+++..+++....
T Consensus 105 iwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sg-qsvRll~ys~skr~lL~~a 183 (673)
T KOG4378|consen 105 IWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSG-QSVRLLRYSPSKRFLLSIA 183 (673)
T ss_pred ehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCC-CeEEEeecccccceeeEee
Confidence 99999766666654 45689999886544 43344 56999999998876666654323 2333344444444444333
Q ss_pred CCCccEEEEEEccCCceeEEE-ecccCCeeEEEECCC-CCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEE
Q 019349 155 STTKGSVLVYNVMELHSHCEI-DAHQAPLAAIVLSSN-GMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSF 232 (342)
Q Consensus 155 ~~~~g~i~iwd~~~~~~~~~~-~~h~~~v~~i~~s~d-g~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~f 232 (342)
+ .+|.|.+||+....++..+ +.|..|...|+|+|. ..+|++-+-|.++ .+||+...+....+. ...+..+++|
T Consensus 184 s-d~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki-~~yD~~s~~s~~~l~---y~~Plstvaf 258 (673)
T KOG4378|consen 184 S-DKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKI-NIYDIRSQASTDRLT---YSHPLSTVAF 258 (673)
T ss_pred c-cCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceE-EEeecccccccceee---ecCCcceeee
Confidence 3 6999999999888777664 579999999999994 5678899999885 599998776666553 2456899999
Q ss_pred ecCCCcccEEEEEeCCCcEEEEecCCCCCC
Q 019349 233 GQSMQFQDILVATSSSGSLHVFSPGFAINQ 262 (342)
Q Consensus 233 s~d~~~~~~l~~~s~dg~i~vwd~~~~~~~ 262 (342)
+++|. +|++|+..|.|..||++..+.+
T Consensus 259 ~~~G~---~L~aG~s~G~~i~YD~R~~k~P 285 (673)
T KOG4378|consen 259 SECGT---YLCAGNSKGELIAYDMRSTKAP 285 (673)
T ss_pred cCCce---EEEeecCCceEEEEecccCCCC
Confidence 99999 9999999999999999876543
No 146
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.78 E-value=7.4e-19 Score=160.72 Aligned_cols=226 Identities=13% Similarity=0.132 Sum_probs=178.4
Q ss_pred CCCCeEEEEEcCCCCEEEEEcCCcE-EEEeCCCCcE--EEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEEC
Q 019349 6 SSYPVFFVSFNQDNSGFALSTKDGF-KIFDSSTGRL--CYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNT 82 (342)
Q Consensus 6 ~~~~V~~l~fs~d~~~la~g~~~g~-~v~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~ 82 (342)
|...|.|+..-..++.+++|+++-. .+|.+....- -+..|..+|..+.+.++...++..+ .+++|++||+
T Consensus 27 hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~Llaags-------asgtiK~wDl 99 (825)
T KOG0267|consen 27 HSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGS-------ASGTIKVWDL 99 (825)
T ss_pred hhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccc-------cCCceeeeeh
Confidence 3456777777667788889988774 6898755422 2455667787777766555544333 5899999999
Q ss_pred CCCcEEEEEec-CCceEEEEEcCCeEEEEE---CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCc
Q 019349 83 TTGTALRELNF-LTSILAVRLNKKRLVIVL---REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTK 158 (342)
Q Consensus 83 ~~~~~~~~~~~-~~~v~~i~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 158 (342)
+.++.++++.. ..++..+.|+|-.-+.++ |..+++||.+...+.+.+..+ ...+-++.+.|++.+++.++ .|
T Consensus 100 eeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~--~~vv~~l~lsP~Gr~v~~g~--ed 175 (825)
T KOG0267|consen 100 EEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSH--TRVVDVLRLSPDGRWVASGG--ED 175 (825)
T ss_pred hhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCC--cceeEEEeecCCCceeeccC--Cc
Confidence 99998887764 458999999998766644 889999999988888888764 34555666778899999888 58
Q ss_pred cEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCc
Q 019349 159 GSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQF 238 (342)
Q Consensus 159 g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~ 238 (342)
.+++|||+..++....|+.|+..+.++.|+|..-+|++||.|++ +++||+++-+.+..... ....|.+++|+|+++
T Consensus 176 ~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~t-v~f~dletfe~I~s~~~--~~~~v~~~~fn~~~~- 251 (825)
T KOG0267|consen 176 NTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRT-VRFWDLETFEVISSGKP--ETDGVRSLAFNPDGK- 251 (825)
T ss_pred ceeeeecccccccccccccccccccccccCchhhhhccCCCCce-eeeeccceeEEeeccCC--ccCCceeeeecCCce-
Confidence 99999999999999999999999999999999999999999987 59999998877766532 245699999999998
Q ss_pred ccEEEEEeCC
Q 019349 239 QDILVATSSS 248 (342)
Q Consensus 239 ~~~l~~~s~d 248 (342)
.+++|...
T Consensus 252 --~~~~G~q~ 259 (825)
T KOG0267|consen 252 --IVLSGEQI 259 (825)
T ss_pred --eeecCchh
Confidence 67666554
No 147
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.78 E-value=8.7e-17 Score=135.02 Aligned_cols=286 Identities=14% Similarity=0.140 Sum_probs=190.7
Q ss_pred CCCCCCCeEEEEEcC-----CCCEEEEEcCCcEEEEeCCCC---cEEEEE----eeCCEEEEEEcCCC---CeEEEEcCC
Q 019349 3 NQSSSYPVFFVSFNQ-----DNSGFALSTKDGFKIFDSSTG---RLCYER----AVGAFSIVEMLYSS---SLLAIVGAG 67 (342)
Q Consensus 3 ~~~~~~~V~~l~fs~-----d~~~la~g~~~g~~v~d~~~~---~~~~~~----~~~~~~~~~~~~~~---~~~~~~~~g 67 (342)
++++..+|..++|++ +-..+|+.+.+.+.+|++... +++... +......+++..+. +.+..++|
T Consensus 34 ~ed~~~~I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G- 112 (385)
T KOG1034|consen 34 KEDHNKPIFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGG- 112 (385)
T ss_pred hccCCCccceeeeehhcCCCCCceEEEeCCcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeec-
Confidence 456788999999995 334567777778899986533 222221 12334455665543 44544554
Q ss_pred CCCCCCCCeEEEEECCCCcEEEEEec-CCceEEEEEcCCe--EEE-EE-CCeEEEEECCCCceeeEEeC-CCCCceEEEE
Q 019349 68 EQPSLSPRRLCLFNTTTGTALRELNF-LTSILAVRLNKKR--LVI-VL-REKTYIYDANTLAILDTIDT-VPNLKGLCAF 141 (342)
Q Consensus 68 ~~~~~~d~~i~iwd~~~~~~~~~~~~-~~~v~~i~~~~~~--~~~-~~-d~~i~i~d~~~~~~~~~~~~-~~~~~~~~~~ 141 (342)
.-+.|+|.|+.++++...+.. ...|..|.++|.. +++ ++ |..|++||+++..++..+.. ..+...+.++
T Consensus 113 -----~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSv 187 (385)
T KOG1034|consen 113 -----YLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSV 187 (385)
T ss_pred -----ceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEE
Confidence 378999999999999887764 4589999998875 444 33 88999999999999888743 3345678889
Q ss_pred eeCCCccEEEEeCCCCccEEEEEEccCCc------ee----------------E------EEecccCCeeEEEECCCCCE
Q 019349 142 SPSLNACFLAVPASTTKGSVLVYNVMELH------SH----------------C------EIDAHQAPLAAIVLSSNGMY 193 (342)
Q Consensus 142 ~~~~~~~~l~~~~~~~~g~i~iwd~~~~~------~~----------------~------~~~~h~~~v~~i~~s~dg~~ 193 (342)
.+++++.+++++| .|-++++|++...+ .. . +-.-|...|-|+.|- |++
T Consensus 188 D~~~~gd~i~ScG--mDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ 263 (385)
T KOG1034|consen 188 DFSLDGDRIASCG--MDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDF 263 (385)
T ss_pred EEcCCCCeeeccC--CcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhh
Confidence 9999999999999 69999999997321 00 0 123477888888885 579
Q ss_pred EEEEeCCCcEEEEEEc-CCCeeEEEeccC-----------cCceeEEEEEE--ecCCCcccEEEEEeCCCcEEEEecCCC
Q 019349 194 IATASEQGTIIRVFLV-SEATKSYSFRRG-----------TYPSTIFSLSF--GQSMQFQDILVATSSSGSLHVFSPGFA 259 (342)
Q Consensus 194 lat~s~dg~~irlwd~-~~~~~~~~~~~~-----------~~~~~v~~l~f--s~d~~~~~~l~~~s~dg~i~vwd~~~~ 259 (342)
+++=|-++.+ ..|-. +-++.+.+..+. ...+.++-|.| .|-++ +||.|...|.|.+||++..
T Consensus 264 ilSkscenaI-~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~---~la~gnq~g~v~vwdL~~~ 339 (385)
T KOG1034|consen 264 ILSKSCENAI-VCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQK---MLALGNQSGKVYVWDLDNN 339 (385)
T ss_pred eeecccCceE-EEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHH---HHhhccCCCcEEEEECCCC
Confidence 9998888875 58977 222222222111 11234555555 55567 9999999999999999987
Q ss_pred CCCCCCCCccccccccccccccccccccccceeeeccCCCccccEEEEEEeCCcEEEEEE
Q 019349 260 INQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIF 319 (342)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~~ 319 (342)
.++........ .... ++. ..+|..++..|+..|.||+|..|+.
T Consensus 340 ep~~~ttl~~s----~~~~-----------tVR--Q~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 340 EPPKCTTLTHS----KSGS-----------TVR--QTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred CCccCceEEec----cccc-----------eee--eeeecccCcEEEEEeCCCcEEEEEe
Confidence 76431110000 0000 011 1123445578999999999999975
No 148
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.77 E-value=6.8e-17 Score=140.97 Aligned_cols=241 Identities=13% Similarity=0.154 Sum_probs=160.8
Q ss_pred CCCCeEEEEEcCCCC--EEEEEcCCc-EEEEeCCCC------cEEEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCe
Q 019349 6 SSYPVFFVSFNQDNS--GFALSTKDG-FKIFDSSTG------RLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRR 76 (342)
Q Consensus 6 ~~~~V~~l~fs~d~~--~la~g~~~g-~~v~d~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~ 76 (342)
++.+|++++|+|..+ .+|+|...| +-+||+.+. -.++..+.+++..+.+.+...-.++.+. .|++
T Consensus 185 ~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssS------yDGt 258 (498)
T KOG4328|consen 185 TDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSS------YDGT 258 (498)
T ss_pred cccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeec------cCce
Confidence 567899999999776 466676666 799999422 2344455566766666654433333332 4999
Q ss_pred EEEEECCCCcEEEEEec--CC-ceEEEEEcCC-eEEEEEC--CeEEEEECCCCce-eeEEeCCCCCceEEEEeeCCCc-c
Q 019349 77 LCLFNTTTGTALRELNF--LT-SILAVRLNKK-RLVIVLR--EKTYIYDANTLAI-LDTIDTVPNLKGLCAFSPSLNA-C 148 (342)
Q Consensus 77 i~iwd~~~~~~~~~~~~--~~-~v~~i~~~~~-~~~~~~d--~~i~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~ 148 (342)
|++-|++++..-..+.. .. -..++.++.+ ..++..+ |...+||++.++. ...+..+.. .++.++.+|.. .
T Consensus 259 iR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~k--KI~sv~~NP~~p~ 336 (498)
T KOG4328|consen 259 IRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKK--KITSVALNPVCPW 336 (498)
T ss_pred eeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhc--ccceeecCCCCch
Confidence 99999987653332322 11 3445555443 3344443 4789999987654 444444444 56667776644 4
Q ss_pred EEEEeCCCCccEEEEEEccCCce----eEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcC----CCeeEEEecc
Q 019349 149 FLAVPASTTKGSVLVYNVMELHS----HCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVS----EATKSYSFRR 220 (342)
Q Consensus 149 ~l~~~~~~~~g~i~iwd~~~~~~----~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~----~~~~~~~~~~ 220 (342)
++|+++ .|++++|||+++... +.....|...|++..|||+|-.|+|-+.|.+ |||||.. .-.....++.
T Consensus 337 ~laT~s--~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~-IRv~dss~~sa~~~p~~~I~H 413 (498)
T KOG4328|consen 337 FLATAS--LDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNE-IRVFDSSCISAKDEPLGTIPH 413 (498)
T ss_pred heeecc--cCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCc-eEEeecccccccCCccceeec
Confidence 667776 699999999976432 3344579999999999998888999999987 6999983 2333333321
Q ss_pred CcCc---eeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCC
Q 019349 221 GTYP---STIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAI 260 (342)
Q Consensus 221 ~~~~---~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~ 260 (342)
.... -...-.+|.||.. ++++|-.-..|-|||-+.++
T Consensus 414 n~~t~RwlT~fKA~W~P~~~---li~vg~~~r~IDv~~~~~~q 453 (498)
T KOG4328|consen 414 NNRTGRWLTPFKAAWDPDYN---LIVVGRYPRPIDVFDGNGGQ 453 (498)
T ss_pred cCcccccccchhheeCCCcc---EEEEeccCcceeEEcCCCCE
Confidence 1111 1245578999988 99999998999999976655
No 149
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.77 E-value=1.5e-18 Score=151.48 Aligned_cols=226 Identities=16% Similarity=0.291 Sum_probs=185.8
Q ss_pred CCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcEEEEEee-CCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCC
Q 019349 8 YPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAV-GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTG 85 (342)
Q Consensus 8 ~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~ 85 (342)
-.-+.+.++.+|++|+.|+.+| +--+|+.++++.++.+. ..+.-+.++++.+++|++ ..+.+.||| ..|
T Consensus 130 FGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVA--------QK~y~yvYD-~~G 200 (545)
T KOG1272|consen 130 FGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVA--------QKKYVYVYD-NNG 200 (545)
T ss_pred cCCeeeeecCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhh--------hhceEEEec-CCC
Confidence 3457889999999999999988 68999999999888765 556677888888888765 468899999 468
Q ss_pred cEEEEEecCCceEEEEEcCCeEEEEE---CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEE
Q 019349 86 TALRELNFLTSILAVRLNKKRLVIVL---REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVL 162 (342)
Q Consensus 86 ~~~~~~~~~~~v~~i~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~ 162 (342)
..+..+.....|..+.|-|.++++++ .|.++.-|+.+|+++..+.+.... +-.++.+|-+..+-++. .+|+|.
T Consensus 201 tElHClk~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~--~~vm~qNP~NaVih~Gh--snGtVS 276 (545)
T KOG1272|consen 201 TELHCLKRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGR--TDVMKQNPYNAVIHLGH--SNGTVS 276 (545)
T ss_pred cEEeehhhcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCc--cchhhcCCccceEEEcC--CCceEE
Confidence 88888888889999999998877766 568999999999999998776553 44566777777776665 589999
Q ss_pred EEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEE
Q 019349 163 VYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDIL 242 (342)
Q Consensus 163 iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l 242 (342)
+|.....+++..+..|.++|.+|++.++|+|+||++.|.. ++|||+++-..+.++.. +.+...++||..| +|
T Consensus 277 lWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~-~kIWDlR~~~ql~t~~t---p~~a~~ls~Sqkg----lL 348 (545)
T KOG1272|consen 277 LWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRK-VKIWDLRNFYQLHTYRT---PHPASNLSLSQKG----LL 348 (545)
T ss_pred ecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccc-eeEeeeccccccceeec---CCCcccccccccc----ce
Confidence 9999999999999999999999999999999999999987 59999998877776643 3446778999877 35
Q ss_pred EEEeCCCcEEEEe
Q 019349 243 VATSSSGSLHVFS 255 (342)
Q Consensus 243 ~~~s~dg~i~vwd 255 (342)
|.+ ....|.||.
T Consensus 349 A~~-~G~~v~iw~ 360 (545)
T KOG1272|consen 349 ALS-YGDHVQIWK 360 (545)
T ss_pred eee-cCCeeeeeh
Confidence 544 445799995
No 150
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.77 E-value=1.3e-17 Score=153.77 Aligned_cols=197 Identities=9% Similarity=0.150 Sum_probs=138.1
Q ss_pred eEEEEEc---CCeEEEEE-CCeEEEEECCC---CceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCC
Q 019349 97 ILAVRLN---KKRLVIVL-REKTYIYDANT---LAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMEL 169 (342)
Q Consensus 97 v~~i~~~---~~~~~~~~-d~~i~i~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~ 169 (342)
+.++.|+ .+.++.+. .|.|.+||+.. .+++..+..| ...+..+.+++-...++.+|+ +||+|++||++..
T Consensus 90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH--~Rs~~~ldfh~tep~iliSGS-QDg~vK~~DlR~~ 166 (839)
T KOG0269|consen 90 AADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEH--ERSANKLDFHSTEPNILISGS-QDGTVKCWDLRSK 166 (839)
T ss_pred hhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhh--ccceeeeeeccCCccEEEecC-CCceEEEEeeecc
Confidence 4445554 34555555 78999999976 3444445443 335556666665555555665 7999999999999
Q ss_pred ceeEEEecccCCeeEEEECC-CCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCC
Q 019349 170 HSHCEIDAHQAPLAAIVLSS-NGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSS 248 (342)
Q Consensus 170 ~~~~~~~~h~~~v~~i~~s~-dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~d 248 (342)
+...++.+....|..|.|+| .+.+++++.+.|. +++||++.... ..++...|.++|.|+.|+|++. +||+|+.|
T Consensus 167 ~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~-lqlWDlRqp~r-~~~k~~AH~GpV~c~nwhPnr~---~lATGGRD 241 (839)
T KOG0269|consen 167 KSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGY-LQLWDLRQPDR-CEKKLTAHNGPVLCLNWHPNRE---WLATGGRD 241 (839)
T ss_pred cccccccccchhhhceeeccCCCceEEEecCCce-EEEeeccCchh-HHHHhhcccCceEEEeecCCCc---eeeecCCC
Confidence 98888888888999999999 6788999998886 58999987543 2222335678899999999888 99999999
Q ss_pred CcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEEEEEEe--CCcEEEEEEe
Q 019349 249 GSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITY--NGYFVEYIFS 320 (342)
Q Consensus 249 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--dg~v~~~~~~ 320 (342)
+.|+|||+..+..... ..+...-| .-...|-|+.. ..|+++++ |-.|++|++.
T Consensus 242 K~vkiWd~t~~~~~~~-----~tInTiap-v~rVkWRP~~~-------------~hLAtcsmv~dtsV~VWDvr 296 (839)
T KOG0269|consen 242 KMVKIWDMTDSRAKPK-----HTINTIAP-VGRVKWRPARS-------------YHLATCSMVVDTSVHVWDVR 296 (839)
T ss_pred ccEEEEeccCCCccce-----eEEeecce-eeeeeeccCcc-------------chhhhhhccccceEEEEeec
Confidence 9999999987553221 11111111 11235777652 34555554 7778999874
No 151
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.76 E-value=1.7e-16 Score=144.92 Aligned_cols=221 Identities=13% Similarity=0.189 Sum_probs=160.3
Q ss_pred EEEcC-CCCEEEEEcCCc-EEEEeCCCCcEEEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEEEE
Q 019349 13 VSFNQ-DNSGFALSTKDG-FKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRE 90 (342)
Q Consensus 13 l~fs~-d~~~la~g~~~g-~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~ 90 (342)
+++-+ |+-.|++|+.|+ +.+|.+.+...++.+..|.-.+++........ ++++ +.|.++++|-. +++...
T Consensus 64 i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSg-----SWD~TakvW~~--~~l~~~ 135 (745)
T KOG0301|consen 64 ICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISG-----SWDSTAKVWRI--GELVYS 135 (745)
T ss_pred ceeccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEec-----ccccceEEecc--hhhhcc
Confidence 55554 444578888777 48999988876665544333333332222222 4454 47999999975 445544
Q ss_pred Ee-cCCceEEEEEcCCeEEEEE--CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEcc
Q 019349 91 LN-FLTSILAVRLNKKRLVIVL--REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVM 167 (342)
Q Consensus 91 ~~-~~~~v~~i~~~~~~~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~ 167 (342)
.. |+..|.++..-++..++.+ |.+|++|.- +++++++..|.+. +-.++.-++. .+++++ .||.|+.|++
T Consensus 136 l~gH~asVWAv~~l~e~~~vTgsaDKtIklWk~--~~~l~tf~gHtD~--VRgL~vl~~~-~flScs--NDg~Ir~w~~- 207 (745)
T KOG0301|consen 136 LQGHTASVWAVASLPENTYVTGSADKTIKLWKG--GTLLKTFSGHTDC--VRGLAVLDDS-HFLSCS--NDGSIRLWDL- 207 (745)
T ss_pred cCCcchheeeeeecCCCcEEeccCcceeeeccC--Cchhhhhccchhh--eeeeEEecCC-CeEeec--CCceEEEEec-
Confidence 44 5568999888777666544 899999985 6778888776654 3334433333 455666 6999999999
Q ss_pred CCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCce-eEEEEEEecCCCcccEEEEEe
Q 019349 168 ELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPS-TIFSLSFGQSMQFQDILVATS 246 (342)
Q Consensus 168 ~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~-~v~~l~fs~d~~~~~~l~~~s 246 (342)
+++++....+|++-|.+++..+++..++++++|++ +|+|+.. ++...+. +++ .|+++.+-++|. +++|+
T Consensus 208 ~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrt-lriW~~~--e~~q~I~---lPttsiWsa~~L~NgD----Ivvg~ 277 (745)
T KOG0301|consen 208 DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRT-LRIWKKD--ECVQVIT---LPTTSIWSAKVLLNGD----IVVGG 277 (745)
T ss_pred cCceeeeeeccceEEEEEEecCCCCeEEEecCCce-EEEeecC--ceEEEEe---cCccceEEEEEeeCCC----EEEec
Confidence 78899999999999999998888899999999998 5999986 5555553 233 589999988997 99999
Q ss_pred CCCcEEEEecCCC
Q 019349 247 SSGSLHVFSPGFA 259 (342)
Q Consensus 247 ~dg~i~vwd~~~~ 259 (342)
+||.||||..+..
T Consensus 278 SDG~VrVfT~~k~ 290 (745)
T KOG0301|consen 278 SDGRVRVFTVDKD 290 (745)
T ss_pred cCceEEEEEeccc
Confidence 9999999987743
No 152
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.76 E-value=5.8e-18 Score=162.16 Aligned_cols=223 Identities=11% Similarity=0.165 Sum_probs=154.5
Q ss_pred CCCeEEEEECCC---CcEE---EE-EecCCceEEEEEcCCeE-EEEE---CCeEEEEECCCCceeeEEeCCCCCceEEEE
Q 019349 73 SPRRLCLFNTTT---GTAL---RE-LNFLTSILAVRLNKKRL-VIVL---REKTYIYDANTLAILDTIDTVPNLKGLCAF 141 (342)
Q Consensus 73 ~d~~i~iwd~~~---~~~~---~~-~~~~~~v~~i~~~~~~~-~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 141 (342)
.||.|.+||... +... .+ -.+.+.|+++.|++..- ++++ ++.|.|||+.+.+.-........+..+.++
T Consensus 88 edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~l 167 (1049)
T KOG0307|consen 88 EDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCL 167 (1049)
T ss_pred cCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEe
Confidence 699999999764 3222 22 24677999999988643 4444 779999999876544444333345678889
Q ss_pred eeCCCccEEEEeCCCCccEEEEEEccCCceeEEEecccC--CeeEEEECCCC-CEEEEEeCCCc--EEEEEEcCCCe-eE
Q 019349 142 SPSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQA--PLAAIVLSSNG-MYIATASEQGT--IIRVFLVSEAT-KS 215 (342)
Q Consensus 142 ~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~--~v~~i~~s~dg-~~lat~s~dg~--~irlwd~~~~~-~~ 215 (342)
+++-....+.++++ .+|.+.|||++..+++..+.-|.. .+..++|+|++ ..|+++++|.. +|++||++.-. .+
T Consensus 168 sWNrkvqhILAS~s-~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~ 246 (1049)
T KOG0307|consen 168 SWNRKVSHILASGS-PSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPL 246 (1049)
T ss_pred ccchhhhHHhhccC-CCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCch
Confidence 98876555555554 689999999999888877765554 47889999976 56778877653 58899988643 34
Q ss_pred EEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeec
Q 019349 216 YSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNA 295 (342)
Q Consensus 216 ~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (342)
++++ + |...|.+|.|++.+. ++|++++.|+.|.+|+.++++..........+ .+..-|.|..
T Consensus 247 k~~~-~-H~~GilslsWc~~D~--~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW-------~fdv~w~pr~------- 308 (1049)
T KOG0307|consen 247 KILE-G-HQRGILSLSWCPQDP--RLLLSSGKDNRIICWNPNTGEVLGELPAQGNW-------CFDVQWCPRN------- 308 (1049)
T ss_pred hhhc-c-cccceeeeccCCCCc--hhhhcccCCCCeeEecCCCceEeeecCCCCcc-------eeeeeecCCC-------
Confidence 4443 2 344599999998773 29999999999999999886542211100000 1222344433
Q ss_pred cCCCccccEEEEEEeCCcEEEEEEe
Q 019349 296 FPAGVKRASVSVITYNGYFVEYIFS 320 (342)
Q Consensus 296 ~~~~~~~~~l~~~~~dg~v~~~~~~ 320 (342)
+ ..+.+.+.||.|.||.+-
T Consensus 309 ----P--~~~A~asfdgkI~I~sl~ 327 (1049)
T KOG0307|consen 309 ----P--SVMAAASFDGKISIYSLQ 327 (1049)
T ss_pred ----c--chhhhheeccceeeeeee
Confidence 1 368888889999999984
No 153
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=1.6e-16 Score=134.14 Aligned_cols=188 Identities=11% Similarity=0.167 Sum_probs=136.9
Q ss_pred CCCeEEEEECCCCcEEEEEecCC-ceEEEEE----cCCeEEEEE-CCeEEEEECCCCceeeEEeCCCCC-ceEEEEeeCC
Q 019349 73 SPRRLCLFNTTTGTALRELNFLT-SILAVRL----NKKRLVIVL-REKTYIYDANTLAILDTIDTVPNL-KGLCAFSPSL 145 (342)
Q Consensus 73 ~d~~i~iwd~~~~~~~~~~~~~~-~v~~i~~----~~~~~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~-~~~~~~~~~~ 145 (342)
+.+.|+++|..+++.+..+..+. .+..+.| +++.+..++ ||+|++||++.......+....++ ....+++.+-
T Consensus 48 Sngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nc 127 (376)
T KOG1188|consen 48 SNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNC 127 (376)
T ss_pred cCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccC
Confidence 47899999999999988887543 5666666 355666666 999999999987655555444443 4556677655
Q ss_pred CccEEEEeCC--CCccEEEEEEccCCce-eEE-EecccCCeeEEEECC-CCCEEEEEeCCCcEEEEEEcCCCeeEEEecc
Q 019349 146 NACFLAVPAS--TTKGSVLVYNVMELHS-HCE-IDAHQAPLAAIVLSS-NGMYIATASEQGTIIRVFLVSEATKSYSFRR 220 (342)
Q Consensus 146 ~~~~l~~~~~--~~~g~i~iwd~~~~~~-~~~-~~~h~~~v~~i~~s~-dg~~lat~s~dg~~irlwd~~~~~~~~~~~~ 220 (342)
+...++++.- ..+-.|.+||++..+. +.. ...|...|++++|.| +-++|+|||.|| ++.|||++....-..+..
T Consensus 128 k~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDG-LvnlfD~~~d~EeDaL~~ 206 (376)
T KOG1188|consen 128 KKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDG-LVNLFDTKKDNEEDALLH 206 (376)
T ss_pred cCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccc-eEEeeecCCCcchhhHHH
Confidence 5666665531 1467899999998776 544 467999999999999 568999999999 578999976532211111
Q ss_pred C-cCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCC
Q 019349 221 G-TYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQR 263 (342)
Q Consensus 221 ~-~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~ 263 (342)
. .+.+.|.++.|..++. ..|.+-+...+..+|+++.+++.-
T Consensus 207 viN~~sSI~~igw~~~~y--krI~clTH~Etf~~~ele~~~~~~ 248 (376)
T KOG1188|consen 207 VINHGSSIHLIGWLSKKY--KRIMCLTHMETFAIYELEDGSEET 248 (376)
T ss_pred hhcccceeeeeeeecCCc--ceEEEEEccCceeEEEccCCChhh
Confidence 0 1234599999998883 258888999999999999877543
No 154
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.75 E-value=1.7e-16 Score=139.88 Aligned_cols=267 Identities=11% Similarity=0.082 Sum_probs=181.1
Q ss_pred CEEEEEcCCcEEEEeCCCCcE--EEEEe--eCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCc----EEEEE
Q 019349 20 SGFALSTKDGFKIFDSSTGRL--CYERA--VGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGT----ALREL 91 (342)
Q Consensus 20 ~~la~g~~~g~~v~d~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~----~~~~~ 91 (342)
+++++++.|.+++||....+. .+..+ .+++..+.|..... +.+.+.+ .|+.+++|.-. |+ ++...
T Consensus 4 Nl~~aS~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~-lvvas~~-----gdk~~~~~~K~-g~~~~Vp~~~k 76 (673)
T KOG4378|consen 4 NLHVASTGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNF-LVVASMA-----GDKVMRIKEKD-GKTPEVPRVRK 76 (673)
T ss_pred ceeeeccCCceEEeecccccCccccccCCCCCcceeeeccccce-EEEeecC-----CceeEEEeccc-CCCCccceeec
Confidence 466777788899999865432 22222 24455555544433 5555443 48899999732 32 11111
Q ss_pred ecCCceEEEEEcCCeEEEEE---CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccC
Q 019349 92 NFLTSILAVRLNKKRLVIVL---REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVME 168 (342)
Q Consensus 92 ~~~~~v~~i~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~ 168 (342)
.....-.|+......++.++ .+.|+|||++...+.+.+..|. ..+.++.++-...+||... ..|.|.|..+.+
T Consensus 77 ~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~--stvt~v~YN~~DeyiAsvs--~gGdiiih~~~t 152 (673)
T KOG4378|consen 77 LTGDNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQ--STVTYVDYNNTDEYIASVS--DGGDIIIHGTKT 152 (673)
T ss_pred cccchHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCc--ceeEEEEecCCcceeEEec--cCCcEEEEeccc
Confidence 11123344444444444444 6799999999665566666554 5677888887788999887 579999999999
Q ss_pred CceeEEEecc-cCCeeEEEECCCCC-EEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEe
Q 019349 169 LHSHCEIDAH-QAPLAAIVLSSNGM-YIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATS 246 (342)
Q Consensus 169 ~~~~~~~~~h-~~~v~~i~~s~dg~-~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s 246 (342)
+....+|... ...|.-+.|+|.-+ +|.++|.+|. +.+||+....++..+.. .|.++...++|+|.+.. +|++.+
T Consensus 153 ~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~-VtlwDv~g~sp~~~~~~-~HsAP~~gicfspsne~--l~vsVG 228 (673)
T KOG4378|consen 153 KQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGA-VTLWDVQGMSPIFHASE-AHSAPCRGICFSPSNEA--LLVSVG 228 (673)
T ss_pred CccccceecCCCCeEEEeecccccceeeEeeccCCe-EEEEeccCCCcccchhh-hccCCcCcceecCCccc--eEEEec
Confidence 8877777644 44567999999665 5778888887 57999987777776643 45778889999998762 888899
Q ss_pred CCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEEEEEEeCCcEEEEEEecCC
Q 019349 247 SSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSINN 323 (342)
Q Consensus 247 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~~~~~~ 323 (342)
.|..|.+||+....... .+..- +| ...++|++.+.+|++|++.|.++.|++...+
T Consensus 229 ~Dkki~~yD~~s~~s~~-------~l~y~---------~P------lstvaf~~~G~~L~aG~s~G~~i~YD~R~~k 283 (673)
T KOG4378|consen 229 YDKKINIYDIRSQASTD-------RLTYS---------HP------LSTVAFSECGTYLCAGNSKGELIAYDMRSTK 283 (673)
T ss_pred ccceEEEeecccccccc-------eeeec---------CC------cceeeecCCceEEEeecCCceEEEEecccCC
Confidence 99999999988443211 11110 11 1355677778999999999999999986543
No 155
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.73 E-value=5.5e-15 Score=135.10 Aligned_cols=117 Identities=17% Similarity=0.291 Sum_probs=96.0
Q ss_pred EEEEeeCCCccEEEEeCCC---CccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCee
Q 019349 138 LCAFSPSLNACFLAVPAST---TKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATK 214 (342)
Q Consensus 138 ~~~~~~~~~~~~l~~~~~~---~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~ 214 (342)
+.+++.+|++.++|++... ....|++|+..+-..++.+++|.-.|+.|+|||||++|++.|.|.+ ..+|.......
T Consensus 528 v~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt-~sl~~~~~~~~ 606 (764)
T KOG1063|consen 528 VYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRT-VSLYEVQEDIK 606 (764)
T ss_pred EEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCce-EEeeeeecccc
Confidence 6788888889999987632 2357999999998888899999999999999999999999999987 58999855432
Q ss_pred EEEec---cCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCC
Q 019349 215 SYSFR---RGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFA 259 (342)
Q Consensus 215 ~~~~~---~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~ 259 (342)
.+++ ...|..-|.+..|+|++. +||++|.|.+|+||.....
T Consensus 607 -~e~~fa~~k~HtRIIWdcsW~pde~---~FaTaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 607 -DEFRFACLKAHTRIIWDCSWSPDEK---YFATASRDKKVKVWEEPDL 650 (764)
T ss_pred -hhhhhccccccceEEEEcccCcccc---eeEEecCCceEEEEeccCc
Confidence 1221 123445599999999999 9999999999999998765
No 156
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=1.7e-15 Score=126.87 Aligned_cols=199 Identities=15% Similarity=0.208 Sum_probs=141.6
Q ss_pred EeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCc-----EEE-EEecCCceEEEEEcCCe--EEEEE--CC
Q 019349 44 RAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGT-----ALR-ELNFLTSILAVRLNKKR--LVIVL--RE 113 (342)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~-----~~~-~~~~~~~v~~i~~~~~~--~~~~~--d~ 113 (342)
.|.+.+..+++..++..++++++ |++|++|+++.-. +++ .++. ...+.+.|.||- +++.. .+
T Consensus 84 gH~~~vt~~~FsSdGK~lat~~~-------Dr~Ir~w~~~DF~~~eHr~~R~nve~-dhpT~V~FapDc~s~vv~~~~g~ 155 (420)
T KOG2096|consen 84 GHKKEVTDVAFSSDGKKLATISG-------DRSIRLWDVRDFENKEHRCIRQNVEY-DHPTRVVFAPDCKSVVVSVKRGN 155 (420)
T ss_pred ccCCceeeeEEcCCCceeEEEeC-------CceEEEEecchhhhhhhhHhhccccC-CCceEEEECCCcceEEEEEccCC
Confidence 35567888888888899999987 9999999987532 111 1222 255778888874 33333 67
Q ss_pred eEEEEECCC---CceeeEE---e---C-CCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCceeEEEecccCCee
Q 019349 114 KTYIYDANT---LAILDTI---D---T-VPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLA 183 (342)
Q Consensus 114 ~i~i~d~~~---~~~~~~~---~---~-~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~ 183 (342)
++++|.+.. |.....+ + . ..+...+..+-..+++.+|++++ .|..|.+|+++ |+.+.++......-.
T Consensus 156 ~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas--~dt~i~lw~lk-Gq~L~~idtnq~~n~ 232 (420)
T KOG2096|consen 156 KLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSAS--LDTKICLWDLK-GQLLQSIDTNQSSNY 232 (420)
T ss_pred EEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEec--CCCcEEEEecC-Cceeeeecccccccc
Confidence 999998732 2221111 0 0 01123344555566778998888 57889999999 888888887777778
Q ss_pred EEEECCCCCEEEEEeCCCcEEEEEEcC---CCe-----eEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEe
Q 019349 184 AIVLSSNGMYIATASEQGTIIRVFLVS---EAT-----KSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFS 255 (342)
Q Consensus 184 ~i~~s~dg~~lat~s~dg~~irlwd~~---~~~-----~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd 255 (342)
..++||+|++||+++---. +++|.+- .|+ .+.++. .|.+.|..++||++.+ .+++.|.||+++|||
T Consensus 233 ~aavSP~GRFia~~gFTpD-VkVwE~~f~kdG~fqev~rvf~Lk--GH~saV~~~aFsn~S~---r~vtvSkDG~wriwd 306 (420)
T KOG2096|consen 233 DAAVSPDGRFIAVSGFTPD-VKVWEPIFTKDGTFQEVKRVFSLK--GHQSAVLAAAFSNSST---RAVTVSKDGKWRIWD 306 (420)
T ss_pred ceeeCCCCcEEEEecCCCC-ceEEEEEeccCcchhhhhhhheec--cchhheeeeeeCCCcc---eeEEEecCCcEEEee
Confidence 8899999999999987665 5899863 332 233343 3456699999999999 999999999999999
Q ss_pred cCCC
Q 019349 256 PGFA 259 (342)
Q Consensus 256 ~~~~ 259 (342)
.+-.
T Consensus 307 tdVr 310 (420)
T KOG2096|consen 307 TDVR 310 (420)
T ss_pred ccce
Confidence 8654
No 157
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.73 E-value=2.4e-14 Score=128.76 Aligned_cols=273 Identities=12% Similarity=0.076 Sum_probs=163.7
Q ss_pred EEEcCCcEEEEeCCC-CcEE--EEEe-eCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECC-CCcE--EEEEecCC
Q 019349 23 ALSTKDGFKIFDSST-GRLC--YERA-VGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTT-TGTA--LRELNFLT 95 (342)
Q Consensus 23 a~g~~~g~~v~d~~~-~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~-~~~~--~~~~~~~~ 95 (342)
+.+.++++++|++.+ +++. .... .+....+.+.++.+.+.+++. .++.|.+|++. +++. +.......
T Consensus 7 ~~~~~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~------~~~~i~~~~~~~~g~l~~~~~~~~~~ 80 (330)
T PRK11028 7 ASPESQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVR------PEFRVLSYRIADDGALTFAAESPLPG 80 (330)
T ss_pred EcCCCCCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEEC------CCCcEEEEEECCCCceEEeeeecCCC
Confidence 334556789999964 4432 2221 234445666777777766554 37889999986 3432 33344444
Q ss_pred ceEEEEEcCCe--EEEEE--CCeEEEEECCC-CceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCc
Q 019349 96 SILAVRLNKKR--LVIVL--REKTYIYDANT-LAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELH 170 (342)
Q Consensus 96 ~v~~i~~~~~~--~~~~~--d~~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~ 170 (342)
....+.+++++ ++++. ++.|.+|++.. +.................+..+|++.++++++. .++.|.+||+.+..
T Consensus 81 ~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~-~~~~v~v~d~~~~g 159 (330)
T PRK11028 81 SPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCL-KEDRIRLFTLSDDG 159 (330)
T ss_pred CceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeC-CCCEEEEEEECCCC
Confidence 66788888764 55554 78999999964 322111211111112334456777878876665 57999999997633
Q ss_pred eeE-------EEecccCCeeEEEECCCCCEEEEEeC-CCcEEEEEEcCC--Ce--eEEEeccCc----CceeEEEEEEec
Q 019349 171 SHC-------EIDAHQAPLAAIVLSSNGMYIATASE-QGTIIRVFLVSE--AT--KSYSFRRGT----YPSTIFSLSFGQ 234 (342)
Q Consensus 171 ~~~-------~~~~h~~~v~~i~~s~dg~~lat~s~-dg~~irlwd~~~--~~--~~~~~~~~~----~~~~v~~l~fs~ 234 (342)
.+. .+.. ......++|+|||++|+++.+ +++ |.+||+.. ++ .+.++.... .+.....+.|+|
T Consensus 160 ~l~~~~~~~~~~~~-g~~p~~~~~~pdg~~lyv~~~~~~~-v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~p 237 (330)
T PRK11028 160 HLVAQEPAEVTTVE-GAGPRHMVFHPNQQYAYCVNELNSS-VDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITP 237 (330)
T ss_pred cccccCCCceecCC-CCCCceEEECCCCCEEEEEecCCCE-EEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECC
Confidence 221 1111 234678999999999988887 555 67999973 32 233332110 111234688999
Q ss_pred CCCcccEEEEEe-CCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEEEEEEe-CC
Q 019349 235 SMQFQDILVATS-SSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITY-NG 312 (342)
Q Consensus 235 d~~~~~~l~~~s-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg 312 (342)
|++ +|+++. .+++|.+|+++...... ...+ ..+. -+.|. .+.+.+++++|++++. ++
T Consensus 238 dg~---~lyv~~~~~~~I~v~~i~~~~~~~------~~~~-~~~~----~~~p~-------~~~~~~dg~~l~va~~~~~ 296 (330)
T PRK11028 238 DGR---HLYACDRTASLISVFSVSEDGSVL------SFEG-HQPT----ETQPR-------GFNIDHSGKYLIAAGQKSH 296 (330)
T ss_pred CCC---EEEEecCCCCeEEEEEEeCCCCeE------EEeE-EEec----cccCC-------ceEECCCCCEEEEEEccCC
Confidence 999 888875 47899999996543211 0011 1000 01111 1233556688988886 99
Q ss_pred cEEEEEEecCCCC
Q 019349 313 YFVEYIFSINNCC 325 (342)
Q Consensus 313 ~v~~~~~~~~~~~ 325 (342)
.|.+|.++.+.+.
T Consensus 297 ~v~v~~~~~~~g~ 309 (330)
T PRK11028 297 HISVYEIDGETGL 309 (330)
T ss_pred cEEEEEEcCCCCc
Confidence 9999999865543
No 158
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.72 E-value=6.9e-16 Score=139.73 Aligned_cols=244 Identities=13% Similarity=0.161 Sum_probs=159.1
Q ss_pred CCCCCeEEEEEcCCCCEEEEEcCC-cEEEEeCCCCcEE----EEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEE
Q 019349 5 SSSYPVFFVSFNQDNSGFALSTKD-GFKIFDSSTGRLC----YERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCL 79 (342)
Q Consensus 5 ~~~~~V~~l~fs~d~~~la~g~~~-g~~v~d~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~i 79 (342)
-|...|..+.|-|...+|++++.| .+++||+.+.++. +-.|.+.+..+++......++ +.|| .|+.|.|
T Consensus 98 aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF-~tGg-----RDg~ill 171 (720)
T KOG0321|consen 98 AHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVF-CTGG-----RDGEILL 171 (720)
T ss_pred cccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcce-eecc-----CCCcEEE
Confidence 467889999999966678777665 4799999988664 334555666566555444443 3333 6999999
Q ss_pred EECCCCcE---------EE-EEe----------------------cCCceEEEEEcCC-eEEEEE--CCeEEEEECCCCc
Q 019349 80 FNTTTGTA---------LR-ELN----------------------FLTSILAVRLNKK-RLVIVL--REKTYIYDANTLA 124 (342)
Q Consensus 80 wd~~~~~~---------~~-~~~----------------------~~~~v~~i~~~~~-~~~~~~--d~~i~i~d~~~~~ 124 (342)
||++-... +. ..+ ..+.|+.+.|..+ .++.++ |+.|++||++...
T Consensus 172 WD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~ 251 (720)
T KOG0321|consen 172 WDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNY 251 (720)
T ss_pred EEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccc
Confidence 99863220 00 000 0123445555443 333344 8899999998643
Q ss_pred eeeE------EeCCCC---CceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCc--eeEEEecccC---CeeEEEECCC
Q 019349 125 ILDT------IDTVPN---LKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELH--SHCEIDAHQA---PLAAIVLSSN 190 (342)
Q Consensus 125 ~~~~------~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~--~~~~~~~h~~---~v~~i~~s~d 190 (342)
.... ...+.+ ..+++++..+..|.+|.+.. .|+.|..|++.+.. ++..+.+|.. .|.+ ..+||
T Consensus 252 ~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsC--tD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks-~lSpd 328 (720)
T KOG0321|consen 252 TAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASC--TDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKS-ELSPD 328 (720)
T ss_pred cccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEe--cCCcEEEEeccccCcCchhhccCcccceeeeee-ecCCC
Confidence 2211 112222 34677888777777877665 58999999997653 3444444322 1222 37899
Q ss_pred CCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCC
Q 019349 191 GMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAIN 261 (342)
Q Consensus 191 g~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~ 261 (342)
+.+|++|+.|... .+|.+.+.+.-..+..+ +.-+|++++|.|.... -++++++|.+++||++..+-+
T Consensus 329 ~~~l~SgSsd~~a-yiw~vs~~e~~~~~l~G-ht~eVt~V~w~pS~~t--~v~TcSdD~~~kiW~l~~~l~ 395 (720)
T KOG0321|consen 329 DCSLLSGSSDEQA-YIWVVSSPEAPPALLLG-HTREVTTVRWLPSATT--PVATCSDDFRVKIWRLSNGLE 395 (720)
T ss_pred CceEeccCCCcce-eeeeecCccCChhhhhC-cceEEEEEeeccccCC--CceeeccCcceEEEeccCchh
Confidence 9999999999986 69999887654444444 3456999999775421 477889999999999966543
No 159
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.71 E-value=2.8e-14 Score=128.42 Aligned_cols=237 Identities=14% Similarity=0.115 Sum_probs=150.6
Q ss_pred CCeEEEEEcCCCCEEEEEcC--CcEEEEeCC-CCcEEEEEe---eCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEE
Q 019349 8 YPVFFVSFNQDNSGFALSTK--DGFKIFDSS-TGRLCYERA---VGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFN 81 (342)
Q Consensus 8 ~~V~~l~fs~d~~~la~g~~--~g~~v~d~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd 81 (342)
.....++|+||+++|++++. +++.+|+++ ++++..... .+....+.+.++.+.+.++.. .++.|.+||
T Consensus 35 ~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~~------~~~~v~v~~ 108 (330)
T PRK11028 35 GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTHISTDHQGRFLFSASY------NANCVSVSP 108 (330)
T ss_pred CCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceEEEECCCCCEEEEEEc------CCCeEEEEE
Confidence 45678999999999877643 457889886 444432211 123345667777777777664 478999999
Q ss_pred CCC-C---cEEEEEecCCceEEEEEcCCe--EEEEE--CCeEEEEECCCCceee-----EEeCCCCCceEEEEeeCCCcc
Q 019349 82 TTT-G---TALRELNFLTSILAVRLNKKR--LVIVL--REKTYIYDANTLAILD-----TIDTVPNLKGLCAFSPSLNAC 148 (342)
Q Consensus 82 ~~~-~---~~~~~~~~~~~v~~i~~~~~~--~~~~~--d~~i~i~d~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 148 (342)
+.+ + +.+..+........+.++++. ++++. ++.|.+||+.+...+. ...... ..+...+.++|++.
T Consensus 109 ~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~-g~~p~~~~~~pdg~ 187 (330)
T PRK11028 109 LDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVE-GAGPRHMVFHPNQQ 187 (330)
T ss_pred ECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCC-CCCCceEEECCCCC
Confidence 864 3 223333333356677788763 44444 6899999997643221 111111 12233456678888
Q ss_pred EEEEeCCCCccEEEEEEccC--C--ceeEEEecc------cCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCe----e
Q 019349 149 FLAVPASTTKGSVLVYNVME--L--HSHCEIDAH------QAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEAT----K 214 (342)
Q Consensus 149 ~l~~~~~~~~g~i~iwd~~~--~--~~~~~~~~h------~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~----~ 214 (342)
+++++.. .+++|.+||+.. + +.+..+..+ ......+.|+|||++|+++......|.+|++.+.. .
T Consensus 188 ~lyv~~~-~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~ 266 (330)
T PRK11028 188 YAYCVNE-LNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSF 266 (330)
T ss_pred EEEEEec-CCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEE
Confidence 8877664 489999999973 2 233444322 11234689999999999986644457899986432 2
Q ss_pred EEEeccCcCceeEEEEEEecCCCcccEEEEEeC-CCcEEEEecCC
Q 019349 215 SYSFRRGTYPSTIFSLSFGQSMQFQDILVATSS-SGSLHVFSPGF 258 (342)
Q Consensus 215 ~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~-dg~i~vwd~~~ 258 (342)
+.....+ .....++|+||++ +|+++.. +++|.+|+++.
T Consensus 267 ~~~~~~~---~~p~~~~~~~dg~---~l~va~~~~~~v~v~~~~~ 305 (330)
T PRK11028 267 EGHQPTE---TQPRGFNIDHSGK---YLIAAGQKSHHISVYEIDG 305 (330)
T ss_pred eEEEecc---ccCCceEECCCCC---EEEEEEccCCcEEEEEEcC
Confidence 2222211 1245789999999 7887765 89999999864
No 160
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.71 E-value=3.6e-15 Score=142.01 Aligned_cols=283 Identities=16% Similarity=0.175 Sum_probs=180.3
Q ss_pred CeEEEEEcCCCCEEEEEcCC-cEEEEeCCCCcEEEEEee-----CCEEEEEEcCCC--CeEEEEcCCCCCCCCCCeEEEE
Q 019349 9 PVFFVSFNQDNSGFALSTKD-GFKIFDSSTGRLCYERAV-----GAFSIVEMLYSS--SLLAIVGAGEQPSLSPRRLCLF 80 (342)
Q Consensus 9 ~V~~l~fs~d~~~la~g~~~-g~~v~d~~~~~~~~~~~~-----~~~~~~~~~~~~--~~~~~~~~g~~~~~~d~~i~iw 80 (342)
+-..+.|+|=..+++++.++ .++|||.+.++.+...+. ..+..+.+...- ..+++++ .|+.|+||
T Consensus 1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas-------~dGvIRIw 1138 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTAS-------SDGVIRIW 1138 (1387)
T ss_pred CCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeec-------cCceEEEe
Confidence 45678899988899988854 579999998887644332 234444444333 3333333 59999999
Q ss_pred ECCC-----CcEEEEEec-----C---CceEEEEEcC--CeEEEEEC-CeEEEEECCCCceeeEEeCCCCCceEEEEeeC
Q 019349 81 NTTT-----GTALRELNF-----L---TSILAVRLNK--KRLVIVLR-EKTYIYDANTLAILDTIDTVPNLKGLCAFSPS 144 (342)
Q Consensus 81 d~~~-----~~~~~~~~~-----~---~~v~~i~~~~--~~~~~~~d-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (342)
+-.. .+.+..... + +.-.-+.|.. ..+++.+| ..|+|||....+++..+....+ ..+.+++.+
T Consensus 1139 k~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~-t~vTaLS~~ 1217 (1387)
T KOG1517|consen 1139 KDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSS-TLVTALSAD 1217 (1387)
T ss_pred cccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCC-ccceeeccc
Confidence 9532 233332221 0 0012233432 34444443 4899999999888888865433 456677765
Q ss_pred CCccEEEEeCCCCccEEEEEEccCCc---eeEEEecccCC--eeEEEECCCCC-EEEEEeCCCcEEEEEEcCCCeeEEE-
Q 019349 145 LNACFLAVPASTTKGSVLVYNVMELH---SHCEIDAHQAP--LAAIVLSSNGM-YIATASEQGTIIRVFLVSEATKSYS- 217 (342)
Q Consensus 145 ~~~~~l~~~~~~~~g~i~iwd~~~~~---~~~~~~~h~~~--v~~i~~s~dg~-~lat~s~dg~~irlwd~~~~~~~~~- 217 (342)
-....++.+|. .||.|++||.+... .+...+.|... |..+.+.+.|- .|++||.||. |++||++.......
T Consensus 1218 ~~~gn~i~AGf-aDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~-I~~~DlR~~~~e~~~ 1295 (1387)
T KOG1517|consen 1218 LVHGNIIAAGF-ADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGD-IQLLDLRMSSKETFL 1295 (1387)
T ss_pred ccCCceEEEee-cCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCe-EEEEecccCcccccc
Confidence 54433444555 69999999987654 46777889887 99999999775 4999999998 58999987422111
Q ss_pred -eccCcC-ceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeec
Q 019349 218 -FRRGTY-PSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNA 295 (342)
Q Consensus 218 -~~~~~~-~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (342)
...+.. .+.+++|..++... .+|+|+. +.|+||++....... .+...++++ ...... ..
T Consensus 1296 ~iv~~~~yGs~lTal~VH~hap---iiAsGs~-q~ikIy~~~G~~l~~-~k~n~~F~~----q~~gs~----------sc 1356 (1387)
T KOG1517|consen 1296 TIVAHWEYGSALTALTVHEHAP---IIASGSA-QLIKIYSLSGEQLNI-IKYNPGFMG----QRIGSV----------SC 1356 (1387)
T ss_pred eeeeccccCccceeeeeccCCC---eeeecCc-ceEEEEecChhhhcc-cccCccccc----CcCCCc----------ce
Confidence 111111 12489999999998 9999998 999999987654221 112223222 221111 12
Q ss_pred cCCCccccEEEEEEeCCcEEEEEEe
Q 019349 296 FPAGVKRASVSVITYNGYFVEYIFS 320 (342)
Q Consensus 296 ~~~~~~~~~l~~~~~dg~v~~~~~~ 320 (342)
++|.|-.-.+++|..|.+|-+|.-.
T Consensus 1357 L~FHP~~~llAaG~~Ds~V~iYs~~ 1381 (1387)
T KOG1517|consen 1357 LAFHPHRLLLAAGSADSTVSIYSCE 1381 (1387)
T ss_pred eeecchhHhhhhccCCceEEEeecC
Confidence 2334443578888889999999653
No 161
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.69 E-value=4.2e-13 Score=122.71 Aligned_cols=243 Identities=16% Similarity=0.243 Sum_probs=174.1
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEcCC-cEEEEeCCCCc-EEEEEee-C--CEEEEEE-cCCCCeEEEEcCCCCCCCCCCeE
Q 019349 4 QSSSYPVFFVSFNQDNSGFALSTKD-GFKIFDSSTGR-LCYERAV-G--AFSIVEM-LYSSSLLAIVGAGEQPSLSPRRL 77 (342)
Q Consensus 4 ~~~~~~V~~l~fs~d~~~la~g~~~-g~~v~d~~~~~-~~~~~~~-~--~~~~~~~-~~~~~~~~~~~~g~~~~~~d~~i 77 (342)
..+...|.++.|.+.+..++.++.+ .+.+|+..... ....... . .+..... ..+....+.... ..++.+
T Consensus 62 ~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~d~~~ 136 (466)
T COG2319 62 RGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASS-----SLDGTV 136 (466)
T ss_pred eeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccC-----CCCccE
Confidence 3567889999999999998888755 47999988775 3333322 1 3444444 334442333322 148899
Q ss_pred EEEECCC-CcEEEEEe-cCCceEEEEEcCCeE--EEEE--CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEE
Q 019349 78 CLFNTTT-GTALRELN-FLTSILAVRLNKKRL--VIVL--REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLA 151 (342)
Q Consensus 78 ~iwd~~~-~~~~~~~~-~~~~v~~i~~~~~~~--~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 151 (342)
.+||... ......+. +...|..+.++++.. +... ++.+++|+...++.+..+..+.. .+.++.+.|++..++
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~ 214 (466)
T COG2319 137 KLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTD--PVSSLAFSPDGGLLI 214 (466)
T ss_pred EEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCC--ceEEEEEcCCcceEE
Confidence 9999987 55555554 456888999988763 2232 67999999998777777765333 455666667776344
Q ss_pred EeCCCCccEEEEEEccCCceeE-EEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCee-EEEeccCcCceeEEE
Q 019349 152 VPASTTKGSVLVYNVMELHSHC-EIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATK-SYSFRRGTYPSTIFS 229 (342)
Q Consensus 152 ~~~~~~~g~i~iwd~~~~~~~~-~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~-~~~~~~~~~~~~v~~ 229 (342)
.+.. .|+.|++||...+.... .+..|.... ...|+|++.++++++.|+. +++||+..... +..+ . .+...+.+
T Consensus 215 ~~~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~-~~~~~~~~~~~~~~~~-~-~~~~~v~~ 289 (466)
T COG2319 215 ASGS-SDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGT-IRLWDLRSSSSLLRTL-S-GHSSSVLS 289 (466)
T ss_pred EEec-CCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCc-EEEeeecCCCcEEEEE-e-cCCccEEE
Confidence 4422 68999999998887777 688888875 4489999999999999997 58999987665 4444 2 23456999
Q ss_pred EEEecCCCcccEEEEEeCCCcEEEEecCCCCC
Q 019349 230 LSFGQSMQFQDILVATSSSGSLHVFSPGFAIN 261 (342)
Q Consensus 230 l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~ 261 (342)
+.|+|++. .+++++.|+.+++|++.....
T Consensus 290 ~~~~~~~~---~~~~~~~d~~~~~~~~~~~~~ 318 (466)
T COG2319 290 VAFSPDGK---LLASGSSDGTVRLWDLETGKL 318 (466)
T ss_pred EEECCCCC---EEEEeeCCCcEEEEEcCCCce
Confidence 99999887 788899999999998876654
No 162
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.69 E-value=4.5e-15 Score=122.94 Aligned_cols=232 Identities=13% Similarity=0.190 Sum_probs=158.0
Q ss_pred CCCCCCCeEEEEEcCCCC----EEEEEcCCcEEEEeCCC--CcEEEE----E-----eeCCEEEEEEcC-CCCeEEEEcC
Q 019349 3 NQSSSYPVFFVSFNQDNS----GFALSTKDGFKIFDSST--GRLCYE----R-----AVGAFSIVEMLY-SSSLLAIVGA 66 (342)
Q Consensus 3 ~~~~~~~V~~l~fs~d~~----~la~g~~~g~~v~d~~~--~~~~~~----~-----~~~~~~~~~~~~-~~~~~~~~~~ 66 (342)
...++.|++-+.|.|+.. .|.+.++|.+|+|.+.. .+.... . ...++....|.. +++++.+.+-
T Consensus 92 ~fd~~YP~tK~~wiPd~~g~~pdlLATs~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSi 171 (364)
T KOG0290|consen 92 NFDHPYPVTKLMWIPDSKGVYPDLLATSSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSI 171 (364)
T ss_pred CCCCCCCccceEecCCccccCcchhhcccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecc
Confidence 347889999999999874 25556678899998763 322211 1 112333333322 3456655554
Q ss_pred CCCCCCCCCeEEEEECCCCcE----EEEEecCCceEEEEEcCC---eEEEEE-CCeEEEEECCCCceeeEEeCCCC-Cce
Q 019349 67 GEQPSLSPRRLCLFNTTTGTA----LRELNFLTSILAVRLNKK---RLVIVL-REKTYIYDANTLAILDTIDTVPN-LKG 137 (342)
Q Consensus 67 g~~~~~~d~~i~iwd~~~~~~----~~~~~~~~~v~~i~~~~~---~~~~~~-d~~i~i~d~~~~~~~~~~~~~~~-~~~ 137 (342)
|-+..|||++++.. .+-+.+..+|.+|+|.+. .++.++ ||.+++||++...--..+-..+. ...
T Consensus 172 -------DTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~p 244 (364)
T KOG0290|consen 172 -------DTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTP 244 (364)
T ss_pred -------cCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCc
Confidence 89999999998733 344678889999999874 233333 99999999988643333322222 345
Q ss_pred EEEEeeCC-CccEEEEeCCCCccEEEEEEccCCc-eeEEEecccCCeeEEEECC-CCCEEEEEeCCCcEEEEEEcCCCee
Q 019349 138 LCAFSPSL-NACFLAVPASTTKGSVLVYNVMELH-SHCEIDAHQAPLAAIVLSS-NGMYIATASEQGTIIRVFLVSEATK 214 (342)
Q Consensus 138 ~~~~~~~~-~~~~l~~~~~~~~g~i~iwd~~~~~-~~~~~~~h~~~v~~i~~s~-dg~~lat~s~dg~~irlwd~~~~~~ 214 (342)
+.-+++++ |-.++|+-.. ....|.|.|++... ++..+.+|.+.|+.|+|.| ....|+||++|... -+||+.+.-.
T Consensus 245 LlRLswnkqDpnymATf~~-dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qa-liWDl~q~~~ 322 (364)
T KOG0290|consen 245 LLRLSWNKQDPNYMATFAM-DSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQA-LIWDLQQMPR 322 (364)
T ss_pred ceeeccCcCCchHHhhhhc-CCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceE-EEEecccccc
Confidence 66666654 3346666554 46789999998764 6788999999999999999 56789999999876 5999975422
Q ss_pred ------EEEeccCcCceeEEEEEEecCCCcccEEEEEeCC
Q 019349 215 ------SYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSS 248 (342)
Q Consensus 215 ------~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~d 248 (342)
+..+. ..++|+.+.|++... ++++.+...
T Consensus 323 ~~~~dPilay~---a~~EVNqi~Ws~~~~--Dwiai~~~k 357 (364)
T KOG0290|consen 323 ENGEDPILAYT---AGGEVNQIQWSSSQP--DWIAICFGK 357 (364)
T ss_pred cCCCCchhhhh---ccceeeeeeecccCC--CEEEEEecC
Confidence 11121 245799999997765 588877654
No 163
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.69 E-value=1.6e-14 Score=125.93 Aligned_cols=277 Identities=12% Similarity=0.122 Sum_probs=171.3
Q ss_pred EEEEEcCCCCEEEEE-cCCc---E--EEEeCCCCcEEEEEee---CCE-EEEEEcC-------CCCeEEEEcCCCCCCCC
Q 019349 11 FFVSFNQDNSGFALS-TKDG---F--KIFDSSTGRLCYERAV---GAF-SIVEMLY-------SSSLLAIVGAGEQPSLS 73 (342)
Q Consensus 11 ~~l~fs~d~~~la~g-~~~g---~--~v~d~~~~~~~~~~~~---~~~-~~~~~~~-------~~~~~~~~~~g~~~~~~ 73 (342)
-.+..-|+.++++++ .++. + .||+-.. .-.|..|. ... .+++++. .+|++|+...
T Consensus 129 de~~V~psDnlIl~ar~eddvs~LEvYVyn~~e-~nlYvHHD~ilpafPLC~ewld~~~~~~~~gNyvAiGtm------- 200 (463)
T KOG0270|consen 129 DEEQVKPSDNLILCARNEDDVSYLEVYVYNEEE-ENLYVHHDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTM------- 200 (463)
T ss_pred ccceeccCCcEEEEeeccCCceEEEEEEEcCCC-cceeEecceeccCcchhhhhhhcCCCCCCCcceEEEecc-------
Confidence 345566777777766 3443 3 4455332 22343332 111 2233332 2367776654
Q ss_pred CCeEEEEECCCCcEE---EEE-------------------ecCCceEEEEEcCCe-EEEEE---CCeEEEEECCCCceee
Q 019349 74 PRRLCLFNTTTGTAL---REL-------------------NFLTSILAVRLNKKR-LVIVL---REKTYIYDANTLAILD 127 (342)
Q Consensus 74 d~~i~iwd~~~~~~~---~~~-------------------~~~~~v~~i~~~~~~-~~~~~---d~~i~i~d~~~~~~~~ 127 (342)
+..|.|||+.--..+ ..+ .+...|..+.+++.. -++++ |.+|++||+.++++..
T Consensus 201 dp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~ 280 (463)
T KOG0270|consen 201 DPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKS 280 (463)
T ss_pred CceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcce
Confidence 779999998521111 111 022245667776642 23333 8899999999999988
Q ss_pred EEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCcee-EEEecccCCeeEEEECCCC-CEEEEEeCCCcEEE
Q 019349 128 TIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSH-CEIDAHQAPLAAIVLSSNG-MYIATASEQGTIIR 205 (342)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~-~~~~~h~~~v~~i~~s~dg-~~lat~s~dg~~ir 205 (342)
++..+.. .+.++.+++....+...|+ .|++|.+.|.+..... ..++ -.+.|..++|.|.. ..+..+..||+ +|
T Consensus 281 s~~~~~k--~Vq~l~wh~~~p~~LLsGs-~D~~V~l~D~R~~~~s~~~wk-~~g~VEkv~w~~~se~~f~~~tddG~-v~ 355 (463)
T KOG0270|consen 281 SITHHGK--KVQTLEWHPYEPSVLLSGS-YDGTVALKDCRDPSNSGKEWK-FDGEVEKVAWDPHSENSFFVSTDDGT-VY 355 (463)
T ss_pred ehhhcCC--ceeEEEecCCCceEEEecc-ccceEEeeeccCccccCceEE-eccceEEEEecCCCceeEEEecCCce-EE
Confidence 8874444 5666777665544444444 6999999999853322 2232 35679999999855 45666778887 58
Q ss_pred EEEcCCC-eeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccc
Q 019349 206 VFLVSEA-TKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVL 284 (342)
Q Consensus 206 lwd~~~~-~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (342)
-+|+++. +++.++.. |..+|.+|++++... ++|++++.|++|++|++....+.....+... ++- .+.+
T Consensus 356 ~~D~R~~~~~vwt~~A--Hd~~ISgl~~n~~~p--~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~-~~r------l~c~ 424 (463)
T KOG0270|consen 356 YFDIRNPGKPVWTLKA--HDDEISGLSVNIQTP--GLLSTASTDKVVKLWKFDVDSPKSVKEHSFK-LGR------LHCF 424 (463)
T ss_pred eeecCCCCCceeEEEe--ccCCcceEEecCCCC--cceeeccccceEEEEeecCCCCccccccccc-ccc------eeec
Confidence 9999875 77887764 466799999998876 4999999999999999986654322111111 110 0111
Q ss_pred cccccceeeeccCCCcc-ccEEEEEEeCCcEEEEEEecCC
Q 019349 285 DPADHHVLRNAFPAGVK-RASVSVITYNGYFVEYIFSINN 323 (342)
Q Consensus 285 ~~~~~~~~~~~~~~~~~-~~~l~~~~~dg~v~~~~~~~~~ 323 (342)
.+ .++ .-.++.|+..+.+++|++-...
T Consensus 425 ~~------------~~~~a~~la~GG~k~~~~vwd~~~~~ 452 (463)
T KOG0270|consen 425 AL------------DPDVAFTLAFGGEKAVLRVWDIFTNS 452 (463)
T ss_pred cc------------CCCcceEEEecCccceEEEeecccCh
Confidence 11 111 1357778888889999876543
No 164
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=2.1e-14 Score=134.63 Aligned_cols=284 Identities=16% Similarity=0.199 Sum_probs=181.6
Q ss_pred EEEcCCCCEEEEEcCCcEEEEeCCCCcEEEEEee--CCEEEEEEcCCCC---eEEEEcCCCCCCCCCCeEEEEECCCCcE
Q 019349 13 VSFNQDNSGFALSTKDGFKIFDSSTGRLCYERAV--GAFSIVEMLYSSS---LLAIVGAGEQPSLSPRRLCLFNTTTGTA 87 (342)
Q Consensus 13 l~fs~d~~~la~g~~~g~~v~d~~~~~~~~~~~~--~~~~~~~~~~~~~---~~~~~~~g~~~~~~d~~i~iwd~~~~~~ 87 (342)
-.||+|++++.....+.+.||...++..+...+. .++..+...++.. ++.+++ .+|+|++||...+..
T Consensus 22 avfSnD~k~l~~~~~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~s-------l~G~I~vwd~~~~~L 94 (792)
T KOG1963|consen 22 AVFSNDAKFLFLCTGNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCS-------LDGTIRVWDWSDGEL 94 (792)
T ss_pred cccccCCcEEEEeeCCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEe-------cCccEEEecCCCcEE
Confidence 4799999999999999999999999977655443 3333344444432 334444 489999999999888
Q ss_pred EEEEecCCceEEEEEc-----------------------------------------------------------C--Ce
Q 019349 88 LRELNFLTSILAVRLN-----------------------------------------------------------K--KR 106 (342)
Q Consensus 88 ~~~~~~~~~v~~i~~~-----------------------------------------------------------~--~~ 106 (342)
+.++....++..+.+. + ..
T Consensus 95 lkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~ 174 (792)
T KOG1963|consen 95 LKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEF 174 (792)
T ss_pred EEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceE
Confidence 7766543322221110 0 01
Q ss_pred EEEEECCeEEEEECCCCceee--EEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccC--C--ceeEEEecccC
Q 019349 107 LVIVLREKTYIYDANTLAILD--TIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVME--L--HSHCEIDAHQA 180 (342)
Q Consensus 107 ~~~~~d~~i~i~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~--~--~~~~~~~~h~~ 180 (342)
..++.+..+++|+...+.... .-....+...+.+++.+|++.++|++. .||.|.+|.--. . .....+.-|..
T Consensus 175 ~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d--~dGrI~vw~d~~~~~~~~t~t~lHWH~~ 252 (792)
T KOG1963|consen 175 KGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGD--SDGRILVWRDFGSSDDSETCTLLHWHHD 252 (792)
T ss_pred EEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEec--cCCcEEEEeccccccccccceEEEeccc
Confidence 122234566777776543110 001112223356777888888999887 589999996322 2 23456778999
Q ss_pred CeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCC
Q 019349 181 PLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAI 260 (342)
Q Consensus 181 ~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~ 260 (342)
+|++++|++||.+|.||+..|-++ +|.+.++++. -+++ -.++|..+.+|||+. +.+...+|+.|++-......
T Consensus 253 ~V~~L~fS~~G~~LlSGG~E~VLv-~Wq~~T~~kq-fLPR--Lgs~I~~i~vS~ds~---~~sl~~~DNqI~li~~~dl~ 325 (792)
T KOG1963|consen 253 EVNSLSFSSDGAYLLSGGREGVLV-LWQLETGKKQ-FLPR--LGSPILHIVVSPDSD---LYSLVLEDNQIHLIKASDLE 325 (792)
T ss_pred ccceeEEecCCceEeecccceEEE-EEeecCCCcc-cccc--cCCeeEEEEEcCCCC---eEEEEecCceEEEEeccchh
Confidence 999999999999999999999765 9999998732 2222 246799999999998 89999999999999875443
Q ss_pred CCCCCCCccccccccccccccccccccccceeeeccCCCccccEEEEEEeCCcEEEEEEecC
Q 019349 261 NQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSIN 322 (342)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~~~~~ 322 (342)
...+ +.++.|..-. . .....-+...+...|..+.++-.+..|.|+.|++...
T Consensus 326 ~k~t-------Isgi~~~~~~-~--k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td 377 (792)
T KOG1963|consen 326 IKST-------ISGIKPPTPS-T--KTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTD 377 (792)
T ss_pred hhhh-------ccCccCCCcc-c--cccccccceeEEEcCCCCceeecCCCceEEEEecccc
Confidence 2211 2222211000 0 0000011122333455577888888899999987543
No 165
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.69 E-value=4.2e-15 Score=135.44 Aligned_cols=268 Identities=13% Similarity=0.134 Sum_probs=188.6
Q ss_pred CeEEEEEcCCCCEEEEEcCCcEEEEeCCCCcEEEE--EeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCc
Q 019349 9 PVFFVSFNQDNSGFALSTKDGFKIFDSSTGRLCYE--RAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGT 86 (342)
Q Consensus 9 ~V~~l~fs~d~~~la~g~~~g~~v~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~ 86 (342)
-|+.++|-|||+.|+.+.++.+-+||.+.|.++.. .|...+.++++..++..++..+ .|+.|.+|.-+ -+
T Consensus 14 ci~d~afkPDGsqL~lAAg~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~-------aDK~VI~W~~k-lE 85 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGS-------ADKSVIIWTSK-LE 85 (1081)
T ss_pred chheeEECCCCceEEEecCCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCC-------CceeEEEeccc-cc
Confidence 68899999999999999989999999999977644 4556788888888887776443 59999999853 34
Q ss_pred EEEEEecCCceEEEEEcCCeE--EEEECCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEE
Q 019349 87 ALRELNFLTSILAVRLNKKRL--VIVLREKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVY 164 (342)
Q Consensus 87 ~~~~~~~~~~v~~i~~~~~~~--~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iw 164 (342)
-+..+.+...|.++.|+|-.. +.++-+..-+|........ .+.....+++.++..||++++.+- .+|+|.|=
T Consensus 86 G~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~----K~kss~R~~~CsWtnDGqylalG~--~nGTIsiR 159 (1081)
T KOG1538|consen 86 GILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVS----KHKSSSRIICCSWTNDGQYLALGM--FNGTISIR 159 (1081)
T ss_pred ceeeeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHH----hhhhheeEEEeeecCCCcEEEEec--cCceEEee
Confidence 556777888999999998643 3344556677876554322 222335678889999999999876 58999997
Q ss_pred EccCCceeEEEe---cccCCeeEEEECCCC-----CEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCC
Q 019349 165 NVMELHSHCEID---AHQAPLAAIVLSSNG-----MYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSM 236 (342)
Q Consensus 165 d~~~~~~~~~~~---~h~~~v~~i~~s~dg-----~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~ 236 (342)
+ .++++...+. +..++|.+|+|+|.. ..++......+ +.++.+ +|+.+..-+. -.-...|+.+-++|
T Consensus 160 N-k~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qT-LSFy~L-sG~~Igk~r~--L~FdP~CisYf~NG 234 (1081)
T KOG1538|consen 160 N-KNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQT-LSFYQL-SGKQIGKDRA--LNFDPCCISYFTNG 234 (1081)
T ss_pred c-CCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccce-eEEEEe-cceeeccccc--CCCCchhheeccCC
Confidence 6 3444444443 467899999999964 34566655554 334444 4555542211 11125788999999
Q ss_pred CcccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEEEEEEeCCcEEE
Q 019349 237 QFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVE 316 (342)
Q Consensus 237 ~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~ 316 (342)
. +++.|+.|+.+++|--+.- . ++ .+.+.-..+|+.+- .|.+.+++.||.||++-.
T Consensus 235 E---y~LiGGsdk~L~~fTR~Gv-r----------LG-Tvg~~D~WIWtV~~----------~PNsQ~v~~GCqDGTiAC 289 (1081)
T KOG1538|consen 235 E---YILLGGSDKQLSLFTRDGV-R----------LG-TVGEQDSWIWTVQA----------KPNSQYVVVGCQDGTIAC 289 (1081)
T ss_pred c---EEEEccCCCceEEEeecCe-E----------Ee-eccccceeEEEEEE----------ccCCceEEEEEccCeeeh
Confidence 9 9999999999999963311 1 22 22222345676543 455579999999999999
Q ss_pred EEEe
Q 019349 317 YIFS 320 (342)
Q Consensus 317 ~~~~ 320 (342)
|++-
T Consensus 290 yNl~ 293 (1081)
T KOG1538|consen 290 YNLI 293 (1081)
T ss_pred hhhH
Confidence 9863
No 166
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.69 E-value=3.8e-14 Score=129.67 Aligned_cols=286 Identities=12% Similarity=0.134 Sum_probs=179.2
Q ss_pred CCCCCCCeEEEEEcCCCC---EEEEEcCCc-EEEEeCCCCc--EEEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCe
Q 019349 3 NQSSSYPVFFVSFNQDNS---GFALSTKDG-FKIFDSSTGR--LCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRR 76 (342)
Q Consensus 3 ~~~~~~~V~~l~fs~d~~---~la~g~~~g-~~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~ 76 (342)
...|..+|+|+.|-|+.+ ++++|+.|+ +++|.+.... .++..+.+...++++.......... ..|++
T Consensus 50 l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~~~~~cv~a~~~~~~~~-------~ad~~ 122 (764)
T KOG1063|consen 50 LDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQGHCKECVCVVARSSVMTCK-------AADGT 122 (764)
T ss_pred ccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeecCcceeEEEEEeeeeEEEee-------ccCce
Confidence 357889999999999888 788888887 6999987332 2333333344444443222222221 25899
Q ss_pred EEEEECCCCc--EEEEEecCC-ce--EEEEE--cCCeEEEEE---CCeEEEEECCCC--ceeeEEeCCCCCceEEEEeeC
Q 019349 77 LCLFNTTTGT--ALRELNFLT-SI--LAVRL--NKKRLVIVL---REKTYIYDANTL--AILDTIDTVPNLKGLCAFSPS 144 (342)
Q Consensus 77 i~iwd~~~~~--~~~~~~~~~-~v--~~i~~--~~~~~~~~~---d~~i~i~d~~~~--~~~~~~~~~~~~~~~~~~~~~ 144 (342)
+.+||.+..+ +...+.+.. .+ .+++. +++.++++. +..|.+|.-... +.+.++..|.+-..-.+++..
T Consensus 123 v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~ 202 (764)
T KOG1063|consen 123 VSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARL 202 (764)
T ss_pred EEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhcc
Confidence 9999986555 223333322 22 22222 344455544 446777766544 445556666554333444433
Q ss_pred C-CccEEEEeCCCCccEEEEEEccCCc---------------------eeE----------EEecccCCeeEEEECCCCC
Q 019349 145 L-NACFLAVPASTTKGSVLVYNVMELH---------------------SHC----------EIDAHQAPLAAIVLSSNGM 192 (342)
Q Consensus 145 ~-~~~~l~~~~~~~~g~i~iwd~~~~~---------------------~~~----------~~~~h~~~v~~i~~s~dg~ 192 (342)
. +..+||+++ +|..|+||.+.-.. ... .+.+|++.|.++.|+|.+.
T Consensus 203 ~~~~~~laS~S--QD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~ 280 (764)
T KOG1063|consen 203 GGDDLLLASSS--QDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGL 280 (764)
T ss_pred CCCcEEEEecC--CceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchh
Confidence 3 244566555 89999999874221 111 1238999999999999999
Q ss_pred EEEEEeCCCcEEEEEEcCCC--eeEEEeccCcC---ceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCC
Q 019349 193 YIATASEQGTIIRVFLVSEA--TKSYSFRRGTY---PSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGR 267 (342)
Q Consensus 193 ~lat~s~dg~~irlwd~~~~--~~~~~~~~~~~---~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~ 267 (342)
.|+++|.|.++| +|--.+. --+...+-|.. ....++.-|+|++. .+++-+..|-.|+|.-+.... -.
T Consensus 281 ~LLSASaDksmi-iW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~---~ii~~g~~Gg~hlWkt~d~~~----w~ 352 (764)
T KOG1063|consen 281 DLLSASADKSMI-IWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSN---VIIAHGRTGGFHLWKTKDKTF----WT 352 (764)
T ss_pred hheecccCcceE-EEecCCccceEEEEEEeecccccccceeeEEEcCCCC---EEEEecccCcEEEEeccCccc----ee
Confidence 999999999987 9976543 33333332221 22367888999998 899999999999998222110 01
Q ss_pred ccccccccccccccccccccccceeeeccCCCccccEEEEEEeCCcEEEEEE
Q 019349 268 TSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIF 319 (342)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~~ 319 (342)
.....+++........|+|.+ .+|+++|.|-+-|+|.-
T Consensus 353 ~~~~iSGH~~~V~dv~W~psG--------------eflLsvs~DQTTRlFa~ 390 (764)
T KOG1063|consen 353 QEPVISGHVDGVKDVDWDPSG--------------EFLLSVSLDQTTRLFAR 390 (764)
T ss_pred eccccccccccceeeeecCCC--------------CEEEEeccccceeeecc
Confidence 112234444445566888877 78999999999988853
No 167
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.69 E-value=4.2e-16 Score=127.36 Aligned_cols=283 Identities=11% Similarity=0.090 Sum_probs=168.3
Q ss_pred CCCCCCCCeEEEEEcCCCCEEEEEcCCcE-EEEeCCCCcEEEEEe-eCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEE
Q 019349 2 SNQSSSYPVFFVSFNQDNSGFALSTKDGF-KIFDSSTGRLCYERA-VGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCL 79 (342)
Q Consensus 2 ~~~~~~~~V~~l~fs~d~~~la~g~~~g~-~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~i 79 (342)
+..++.+.|+++.|-.++. |.+|...|+ .+|++++.+-..... .+...+..+..-.+. .++..| .|.++.+
T Consensus 9 vLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d-~l~tqg-----Rd~~L~l 81 (323)
T KOG0322|consen 9 VLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPND-SLDTQG-----RDPLLIL 81 (323)
T ss_pred Eeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCCc-chhhcC-----CCceEEE
Confidence 4557788899999998876 788998886 999998875443333 233333333332322 222333 4889999
Q ss_pred EECCCCcEEEEEecCCceEEEEEcC-----C---e-EEEEE-C-C--eEEEEECCCCceeeEEeCCC--CCceEEEEee-
Q 019349 80 FNTTTGTALRELNFLTSILAVRLNK-----K---R-LVIVL-R-E--KTYIYDANTLAILDTIDTVP--NLKGLCAFSP- 143 (342)
Q Consensus 80 wd~~~~~~~~~~~~~~~v~~i~~~~-----~---~-~~~~~-d-~--~i~i~d~~~~~~~~~~~~~~--~~~~~~~~~~- 143 (342)
|++.-+..+..-.. .+.++-|-+ + . ..... + + .+.+-|......+...+... ....+.++..
T Consensus 82 w~ia~s~~i~i~Si--~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~ 159 (323)
T KOG0322|consen 82 WTIAYSAFISIHSI--VVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKD 159 (323)
T ss_pred EEccCcceEEEeee--eccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeecc
Confidence 99876544322110 111222211 1 0 01111 1 1 12222222221111111111 1112333331
Q ss_pred -CCCccEEEEeCCCCccEEEEEEccCCc----------eeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCC-
Q 019349 144 -SLNACFLAVPASTTKGSVLVYNVMELH----------SHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSE- 211 (342)
Q Consensus 144 -~~~~~~l~~~~~~~~g~i~iwd~~~~~----------~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~- 211 (342)
......++.+|. .+|.|.+||+.++. .......|+.+|.++.|.+.-..=++|+.+..++ .|.+..
T Consensus 160 ~~c~s~~lllaGy-Esghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~-~~Sl~~s 237 (323)
T KOG0322|consen 160 HACGSTFLLLAGY-ESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLV-MYSLNHS 237 (323)
T ss_pred ccccceEEEEEec-cCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccce-eeeeccc
Confidence 122346677787 79999999998873 3344557999999999987666667777777765 888753
Q ss_pred -CeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccc
Q 019349 212 -ATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHH 290 (342)
Q Consensus 212 -~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (342)
+.+.........+..|..+.+.||++ .||+++.|+.|+||.-++..+.... ..|+
T Consensus 238 ~gslq~~~e~~lknpGv~gvrIRpD~K---IlATAGWD~RiRVyswrtl~pLAVL---------------------kyHs 293 (323)
T KOG0322|consen 238 TGSLQIRKEITLKNPGVSGVRIRPDGK---ILATAGWDHRIRVYSWRTLNPLAVL---------------------KYHS 293 (323)
T ss_pred cCcccccceEEecCCCccceEEccCCc---EEeecccCCcEEEEEeccCCchhhh---------------------hhhh
Confidence 32211100111122377889999999 9999999999999999887764421 1223
Q ss_pred eeeeccCCCccccEEEEEEeCCcEEEEEE
Q 019349 291 VLRNAFPAGVKRASVSVITYNGYFVEYIF 319 (342)
Q Consensus 291 ~~~~~~~~~~~~~~l~~~~~dg~v~~~~~ 319 (342)
..+..++|.++.+.++++|.|++|-.|.+
T Consensus 294 agvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 294 AGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred cceeEEEeCCCCchhhhccCCceEEeeec
Confidence 33456667777789999999999999986
No 168
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.68 E-value=1.2e-14 Score=124.90 Aligned_cols=200 Identities=14% Similarity=0.141 Sum_probs=139.5
Q ss_pred cCCceEEEEEcCCe-EEEEE---CCeEEEEECCCC-------ceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEE
Q 019349 93 FLTSILAVRLNKKR-LVIVL---REKTYIYDANTL-------AILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSV 161 (342)
Q Consensus 93 ~~~~v~~i~~~~~~-~~~~~---d~~i~i~d~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i 161 (342)
+..+|.+++|.|.. ..+|+ |.+|.||++... +.+..+..|....++++..+... ..|+++| .|.+|
T Consensus 80 Ht~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~-NVLlsag--~Dn~v 156 (472)
T KOG0303|consen 80 HTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAP-NVLLSAG--SDNTV 156 (472)
T ss_pred ccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccch-hhHhhcc--CCceE
Confidence 35689999997743 33333 669999999654 23455666666667766666543 3666777 48999
Q ss_pred EEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccE
Q 019349 162 LVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDI 241 (342)
Q Consensus 162 ~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~ 241 (342)
.+||+.+++.+.++. |..-|.++.|+.||.+|+|.+.|.. |||||.++++.+.+-.. +..+.-..+-|-.++. +
T Consensus 157 ~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKk-vRv~dpr~~~~v~e~~~-heG~k~~Raifl~~g~---i 230 (472)
T KOG0303|consen 157 SIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKK-VRVIDPRRGTVVSEGVA-HEGAKPARAIFLASGK---I 230 (472)
T ss_pred EEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccce-eEEEcCCCCcEeeeccc-ccCCCcceeEEeccCc---e
Confidence 999999999888887 9999999999999999999999987 69999999999887643 3333445566777886 4
Q ss_pred EEEEe---CCCcEEEEecCCCCCCCC---CCCccccccccccccccccccccccceeeeccCCCccccEEE-EEEeCCcE
Q 019349 242 LVATS---SSGSLHVFSPGFAINQRR---GGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVS-VITYNGYF 314 (342)
Q Consensus 242 l~~~s---~dg~i~vwd~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~dg~v 314 (342)
+-+|- ++..+-+||-+.-+++.- ...+++. .+| .|+++. +.|. +|=+||.|
T Consensus 231 ~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGv---l~P-----FyD~dt--------------~ivYl~GKGD~~I 288 (472)
T KOG0303|consen 231 FTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGV---LLP-----FYDPDT--------------SIVYLCGKGDSSI 288 (472)
T ss_pred eeeccccccccceeccCcccccCcceeEEeccCCce---EEe-----eecCCC--------------CEEEEEecCCcce
Confidence 44442 356799999776655421 1111111 112 344443 4444 44459999
Q ss_pred EEEEEecCC
Q 019349 315 VEYIFSINN 323 (342)
Q Consensus 315 ~~~~~~~~~ 323 (342)
+.|.+..+.
T Consensus 289 RYyEit~d~ 297 (472)
T KOG0303|consen 289 RYFEITNEP 297 (472)
T ss_pred EEEEecCCC
Confidence 999987655
No 169
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.67 E-value=7.8e-14 Score=116.51 Aligned_cols=259 Identities=15% Similarity=0.190 Sum_probs=156.7
Q ss_pred EEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcE----EEEEe-cCCceEEEEEc-CC-eEEE--EE-CCeEEEE
Q 019349 49 FSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTA----LRELN-FLTSILAVRLN-KK-RLVI--VL-REKTYIY 118 (342)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~----~~~~~-~~~~v~~i~~~-~~-~~~~--~~-d~~i~i~ 118 (342)
+-.+.+.+.+..++.++. |.+|+|||.+.... ....+ +.+.|..|.|. |. +.++ ++ |+++.||
T Consensus 16 ihdVs~D~~GRRmAtCSs-------Dq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iW 88 (361)
T KOG2445|consen 16 IHDVSFDFYGRRMATCSS-------DQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIW 88 (361)
T ss_pred eeeeeecccCceeeeccC-------CCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeee
Confidence 455677888899998875 89999999754432 22333 45688888884 33 2333 34 9999999
Q ss_pred ECCCC---------ceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCcee------EEEe-------
Q 019349 119 DANTL---------AILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSH------CEID------- 176 (342)
Q Consensus 119 d~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~------~~~~------- 176 (342)
.=... ....++........-+.|+|..-+..||+++ .||.++||+....-.+ ..++
T Consensus 89 EE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~--aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~ 166 (361)
T KOG2445|consen 89 EEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAAS--ADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPG 166 (361)
T ss_pred eecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEec--cCcEEEEEecCCccccccchhhhhhhhccCCcc
Confidence 76211 1122232222223345667766788899888 6999999997543222 1222
Q ss_pred cccCCeeEEEECCC---CCEEEEEeCC-----CcEEEEEEcCCCe----eEEEeccCcCceeEEEEEEecCC-CcccEEE
Q 019349 177 AHQAPLAAIVLSSN---GMYIATASEQ-----GTIIRVFLVSEAT----KSYSFRRGTYPSTIFSLSFGQSM-QFQDILV 243 (342)
Q Consensus 177 ~h~~~v~~i~~s~d---g~~lat~s~d-----g~~irlwd~~~~~----~~~~~~~~~~~~~v~~l~fs~d~-~~~~~l~ 243 (342)
.|..+..|+.|+|. ..+||.|+.+ +.+ +||....+. .+.++. .+..+|++++|.|+- +--.+||
T Consensus 167 ~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~-~Iye~~e~~rKw~kva~L~--d~~dpI~di~wAPn~Gr~y~~lA 243 (361)
T KOG2445|consen 167 KNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKV-KIYEYNENGRKWLKVAELP--DHTDPIRDISWAPNIGRSYHLLA 243 (361)
T ss_pred cccCcceEEeeccccccCceEEEEcccCCccccce-EEEEecCCcceeeeehhcC--CCCCcceeeeeccccCCceeeEE
Confidence 47788899999974 3679998876 344 588765432 344554 346679999999973 1113899
Q ss_pred EEeCCCcEEEEecCCCCCCC-CCCCccc-cccccccccccccccccccceeeeccCCCccccEEEEEEeCCcEEEEEEec
Q 019349 244 ATSSSGSLHVFSPGFAINQR-RGGRTSS-ILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSI 321 (342)
Q Consensus 244 ~~s~dg~i~vwd~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~~~~ 321 (342)
+++.|| |+||.++....+- ..+.... .++. ++ +..+-..++|.-.+..+....-+..|.+.+.||.|+.|..+.
T Consensus 244 vA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~-l~--v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany 319 (361)
T KOG2445|consen 244 VATKDG-VRIFKVKVARSAIEEEEVLAPDLMTD-LP--VEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANY 319 (361)
T ss_pred EeecCc-EEEEEEeeccchhhhhcccCCCCccc-cc--eEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhh
Confidence 999999 9999998532111 0000000 0000 00 011111222222222222233346788899999999998655
Q ss_pred CC
Q 019349 322 NN 323 (342)
Q Consensus 322 ~~ 323 (342)
.+
T Consensus 320 ~n 321 (361)
T KOG2445|consen 320 NN 321 (361)
T ss_pred hh
Confidence 43
No 170
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.66 E-value=2.2e-14 Score=118.80 Aligned_cols=241 Identities=14% Similarity=0.148 Sum_probs=163.3
Q ss_pred CCCCCCeEEEEEcCCCC-EEEEEcCC--------cEEEEeCCCC---------cEEEE---EeeCCEEEEEEcCCCCeEE
Q 019349 4 QSSSYPVFFVSFNQDNS-GFALSTKD--------GFKIFDSSTG---------RLCYE---RAVGAFSIVEMLYSSSLLA 62 (342)
Q Consensus 4 ~~~~~~V~~l~fs~d~~-~la~g~~~--------g~~v~d~~~~---------~~~~~---~~~~~~~~~~~~~~~~~~~ 62 (342)
..+.++|..++=+|-.. .|++...+ +.-||.+... +.+-. .+.+.+.++.|.+++..++
T Consensus 60 ~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~kla 139 (370)
T KOG1007|consen 60 FHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLA 139 (370)
T ss_pred hcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeE
Confidence 34667888888888554 45655431 2468976432 11111 1236788999999888877
Q ss_pred EEcCCCCCCCCCCeEEEEECCCCcE-EEEEec------CCceEEEEEcC--Ce--EEEEECCeEEEEECCCCceeeEEeC
Q 019349 63 IVGAGEQPSLSPRRLCLFNTTTGTA-LRELNF------LTSILAVRLNK--KR--LVIVLREKTYIYDANTLAILDTIDT 131 (342)
Q Consensus 63 ~~~~g~~~~~~d~~i~iwd~~~~~~-~~~~~~------~~~v~~i~~~~--~~--~~~~~d~~i~i~d~~~~~~~~~~~~ 131 (342)
.+. ++.|.+|++..+.. +..+.. .....+-+|+| +. +....|+++..||+++.+....++.
T Consensus 140 sm~--------dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~sI~d 211 (370)
T KOG1007|consen 140 SMD--------DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKNNSIED 211 (370)
T ss_pred Eec--------cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeCCCcEEEEEccchhhhcchhh
Confidence 664 78999999987765 333321 22455566766 23 3334488999999999887777753
Q ss_pred CCCCceEEEEeeCCCccE-EEEeCCCCccEEEEEEccCCc-eeEEEecccCCeeEEEECCC-CCEEEEEeCCCcEEEEEE
Q 019349 132 VPNLKGLCAFSPSLNACF-LAVPASTTKGSVLVYNVMELH-SHCEIDAHQAPLAAIVLSSN-GMYIATASEQGTIIRVFL 208 (342)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~-l~~~~~~~~g~i~iwd~~~~~-~~~~~~~h~~~v~~i~~s~d-g~~lat~s~dg~~irlwd 208 (342)
.+...+..+.++|+.++ |+++| .||.|+|||.+..+ ++..+.+|...|.++.|+|. .++|+|||.|..++ +|.
T Consensus 212 -AHgq~vrdlDfNpnkq~~lvt~g--DdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~-Lsc 287 (370)
T KOG1007|consen 212 -AHGQRVRDLDFNPNKQHILVTCG--DDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVN-LSC 287 (370)
T ss_pred -hhcceeeeccCCCCceEEEEEcC--CCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeE-EEe
Confidence 23345667778887655 55555 69999999998654 78999999999999999994 47889999998865 886
Q ss_pred cCCCe---------------------eEEEecc------CcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCC
Q 019349 209 VSEAT---------------------KSYSFRR------GTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGF 258 (342)
Q Consensus 209 ~~~~~---------------------~~~~~~~------~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~ 258 (342)
..+-. +.+.++. ..+...|++++||.-..- ++|+-|-||.+-|=.+..
T Consensus 288 a~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPW--iFASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 288 ASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPW--IFASLSYDGRVIISSVPR 362 (370)
T ss_pred ccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCe--eEEEeccCceEEeecCCh
Confidence 53211 0001111 112345999999988772 566669999998876653
No 171
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.65 E-value=6.8e-14 Score=113.34 Aligned_cols=162 Identities=14% Similarity=0.077 Sum_probs=116.3
Q ss_pred EecCCceEEEEEcCCeEEEEECCeEEEEECCCC------ceeeEEeCCCC-----CceEEEEeeCCCccEEEEeCCCCcc
Q 019349 91 LNFLTSILAVRLNKKRLVIVLREKTYIYDANTL------AILDTIDTVPN-----LKGLCAFSPSLNACFLAVPASTTKG 159 (342)
Q Consensus 91 ~~~~~~v~~i~~~~~~~~~~~d~~i~i~d~~~~------~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~~~g 159 (342)
-.+..+|+.++|+.+.++.+.||.|+=|..+.. +.+.+...+.+ ...+.++..+|...-++++| .|+
T Consensus 59 qahdgpiy~~~f~d~~Lls~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~Ag--GD~ 136 (325)
T KOG0649|consen 59 QAHDGPIYYLAFHDDFLLSGGDGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAG--GDG 136 (325)
T ss_pred cccCCCeeeeeeehhheeeccCceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEec--CCe
Confidence 345679999999999999999999999977532 11111111111 12355666666555666666 489
Q ss_pred EEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCc--------eeEEEEE
Q 019349 160 SVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYP--------STIFSLS 231 (342)
Q Consensus 160 ~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~--------~~v~~l~ 231 (342)
.+.-||+++++..+++++|++-|.+++--.....+.||++||+ +|+||.++++.+..+..-.++ .-|-+++
T Consensus 137 ~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGt-vRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala 215 (325)
T KOG0649|consen 137 VIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGT-VRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALA 215 (325)
T ss_pred EEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCcc-EEEEeccccceeEEeccccChhhcCcccCceeEEEe
Confidence 9999999999999999999999999988455567999999998 599999999987766422111 1255555
Q ss_pred EecCCCcccEEEEEeCCCcEEEEecCCCCC
Q 019349 232 FGQSMQFQDILVATSSSGSLHVFSPGFAIN 261 (342)
Q Consensus 232 fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~ 261 (342)
- +.. +|++|+. ..+.+|.++..+.
T Consensus 216 ~--~ed---WlvCGgG-p~lslwhLrsse~ 239 (325)
T KOG0649|consen 216 V--NED---WLVCGGG-PKLSLWHLRSSES 239 (325)
T ss_pred c--cCc---eEEecCC-CceeEEeccCCCc
Confidence 4 444 7877664 4789999876543
No 172
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.65 E-value=1.7e-14 Score=121.43 Aligned_cols=161 Identities=17% Similarity=0.219 Sum_probs=124.0
Q ss_pred CCceEEEEEcC-----CeEEE--EECCeEEEEECCC-C--ceeeEEeCCCCCc--eEEEEeeCCC--ccEEEEeCCCCcc
Q 019349 94 LTSILAVRLNK-----KRLVI--VLREKTYIYDANT-L--AILDTIDTVPNLK--GLCAFSPSLN--ACFLAVPASTTKG 159 (342)
Q Consensus 94 ~~~v~~i~~~~-----~~~~~--~~d~~i~i~d~~~-~--~~~~~~~~~~~~~--~~~~~~~~~~--~~~l~~~~~~~~g 159 (342)
..+|.+++|+. +..++ ++.+.+.+|.... + +.++.+.....+. ..++.+.+.+ ..++|.+| .-|
T Consensus 38 ~~~I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G--~~G 115 (385)
T KOG1034|consen 38 NKPIFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGG--YLG 115 (385)
T ss_pred CCccceeeeehhcCCCCCceEEEeCCcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeec--cee
Confidence 34778888762 22333 3367899998853 3 4555554433333 3344444332 46888888 579
Q ss_pred EEEEEEccCCceeEEEecccCCeeEEEECCCC-CEEEEEeCCCcEEEEEEcCCCeeEEEecc-CcCceeEEEEEEecCCC
Q 019349 160 SVLVYNVMELHSHCEIDAHQAPLAAIVLSSNG-MYIATASEQGTIIRVFLVSEATKSYSFRR-GTYPSTIFSLSFGQSMQ 237 (342)
Q Consensus 160 ~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg-~~lat~s~dg~~irlwd~~~~~~~~~~~~-~~~~~~v~~l~fs~d~~ 237 (342)
.|+|.|+.+++....+.+|...|+.|.|.|+. ++|++||.|.+ ||+|++++..++..|-. ..|..+|.++.|++++.
T Consensus 116 vIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~s-vRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd 194 (385)
T KOG1034|consen 116 VIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHS-VRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGD 194 (385)
T ss_pred EEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCce-EEEEeccCCeEEEEecccccccCcEEEEEEcCCCC
Confidence 99999999999999999999999999999965 78999999976 69999999999988843 12456799999999999
Q ss_pred cccEEEEEeCCCcEEEEecCCCC
Q 019349 238 FQDILVATSSSGSLHVFSPGFAI 260 (342)
Q Consensus 238 ~~~~l~~~s~dg~i~vwd~~~~~ 260 (342)
+|++++.|.++++|++..++
T Consensus 195 ---~i~ScGmDhslk~W~l~~~~ 214 (385)
T KOG1034|consen 195 ---RIASCGMDHSLKLWRLNVKE 214 (385)
T ss_pred ---eeeccCCcceEEEEecChhH
Confidence 99999999999999998554
No 173
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.64 E-value=1.1e-14 Score=123.17 Aligned_cols=185 Identities=15% Similarity=0.185 Sum_probs=129.8
Q ss_pred CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCceeEE--Eeccc-CCeeEEEEC
Q 019349 112 REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCE--IDAHQ-APLAAIVLS 188 (342)
Q Consensus 112 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~--~~~h~-~~v~~i~~s 188 (342)
.+.|++||..+++.+..+..++.....+.+........+.+++ .||+|++||++....... +.+|. .+..|++.+
T Consensus 49 ngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~s--sDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~n 126 (376)
T KOG1188|consen 49 NGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCS--SDGTVRLWDIRSQAESARISWTQQSGTPFICLDLN 126 (376)
T ss_pred CCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEec--cCCeEEEEEeecchhhhheeccCCCCCcceEeecc
Confidence 7899999999999999998776655555555422223455555 689999999998765443 44565 578888888
Q ss_pred CCCCEEEEEeC----CCcEEEEEEcCCCee-EEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCC
Q 019349 189 SNGMYIATASE----QGTIIRVFLVSEATK-SYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQR 263 (342)
Q Consensus 189 ~dg~~lat~s~----dg~~irlwd~~~~~~-~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~ 263 (342)
-.++.++.|.+ |-. +.+||++..+. +..+.. .|...|+++.|+|... |+|++||.||-|.|||++...+..
T Consensus 127 ck~~ii~~GtE~~~s~A~-v~lwDvR~~qq~l~~~~e-SH~DDVT~lrFHP~~p--nlLlSGSvDGLvnlfD~~~d~EeD 202 (376)
T KOG1188|consen 127 CKKNIIACGTELTRSDAS-VVLWDVRSEQQLLRQLNE-SHNDDVTQLRFHPSDP--NLLLSGSVDGLVNLFDTKKDNEED 202 (376)
T ss_pred CcCCeEEeccccccCceE-EEEEEeccccchhhhhhh-hccCcceeEEecCCCC--CeEEeecccceEEeeecCCCcchh
Confidence 78899998864 333 46999998776 555533 3455699999999987 699999999999999998774422
Q ss_pred CCCCcccccccccc--ccc-cccccccccceeeeccCCCccccEEEEEEeCCcEEEEEEecC
Q 019349 264 RGGRTSSILGSILP--ESV-NEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSIN 322 (342)
Q Consensus 264 ~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~~~~~ 322 (342)
. +-.... ..+ .+-|.. ++-++|++.+..+.+.+|.+...
T Consensus 203 a-------L~~viN~~sSI~~igw~~-------------~~ykrI~clTH~Etf~~~ele~~ 244 (376)
T KOG1188|consen 203 A-------LLHVINHGSSIHLIGWLS-------------KKYKRIMCLTHMETFAIYELEDG 244 (376)
T ss_pred h-------HHHhhcccceeeeeeeec-------------CCcceEEEEEccCceeEEEccCC
Confidence 1 000000 000 011222 22257999999999999998643
No 174
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.64 E-value=6.5e-15 Score=123.30 Aligned_cols=162 Identities=19% Similarity=0.206 Sum_probs=119.1
Q ss_pred EEEEeeCCCccEEEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEE
Q 019349 138 LCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYS 217 (342)
Q Consensus 138 ~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~ 217 (342)
..++.+++.|.+||.+. .+|.|.|||+.+...-+.+.+|..||.+++||+||++|+|+|.|.. |++||+..|.++++
T Consensus 26 a~~~~Fs~~G~~lAvGc--~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~s-i~lwDl~~gs~l~r 102 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGC--ANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWS-IKLWDLLKGSPLKR 102 (405)
T ss_pred cceEEeccCcceeeeec--cCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCce-eEEEeccCCCceeE
Confidence 44556677788999887 6999999999999888889999999999999999999999999987 57999999999998
Q ss_pred eccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccC
Q 019349 218 FRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFP 297 (342)
Q Consensus 218 ~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (342)
++ .+++|+.+.|+|... |..++.-.+..-.+-++..++. . ++|..-..--+ .......
T Consensus 103 ir---f~spv~~~q~hp~k~--n~~va~~~~~sp~vi~~s~~~h--------~----~Lp~d~d~dln-----~sas~~~ 160 (405)
T KOG1273|consen 103 IR---FDSPVWGAQWHPRKR--NKCVATIMEESPVVIDFSDPKH--------S----VLPKDDDGDLN-----SSASHGV 160 (405)
T ss_pred EE---ccCccceeeeccccC--CeEEEEEecCCcEEEEecCCce--------e----eccCCCccccc-----ccccccc
Confidence 85 356799999999776 3555555555556666554322 1 11110000000 0001123
Q ss_pred CCccccEEEEEEeCCcEEEEEEecCCC
Q 019349 298 AGVKRASVSVITYNGYFVEYIFSINNC 324 (342)
Q Consensus 298 ~~~~~~~l~~~~~dg~v~~~~~~~~~~ 324 (342)
|.+++++|++|.+-|.+.+|+..+-++
T Consensus 161 fdr~g~yIitGtsKGkllv~~a~t~e~ 187 (405)
T KOG1273|consen 161 FDRRGKYIITGTSKGKLLVYDAETLEC 187 (405)
T ss_pred ccCCCCEEEEecCcceEEEEecchhee
Confidence 466779999999999999998876543
No 175
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.64 E-value=7.6e-15 Score=133.06 Aligned_cols=161 Identities=16% Similarity=0.182 Sum_probs=124.8
Q ss_pred CCceEEEEEcCCeEEEEE---CCeEEEEECCCC-cee-eEEeCCCCCceEEEEeeCC-CccEEEEeCCCCccEEEEEEcc
Q 019349 94 LTSILAVRLNKKRLVIVL---REKTYIYDANTL-AIL-DTIDTVPNLKGLCAFSPSL-NACFLAVPASTTKGSVLVYNVM 167 (342)
Q Consensus 94 ~~~v~~i~~~~~~~~~~~---d~~i~i~d~~~~-~~~-~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~g~i~iwd~~ 167 (342)
++...+++.+..+.++-. .|.|-||+++.. ++- ..+..-.|...+..+.++| |...||+++ .||.|++|.+.
T Consensus 581 PgEsnGfcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~--ddg~i~lWr~~ 658 (1012)
T KOG1445|consen 581 PGESNGFCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVAT--DDGQINLWRLT 658 (1012)
T ss_pred CCccCceeeccceEEEEecCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecc--cCceEEEEEec
Confidence 345556666666666543 679999999764 322 1233444556677888877 556788887 69999999985
Q ss_pred CC-------ceeEEEecccCCeeEEEECC-CCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcc
Q 019349 168 EL-------HSHCEIDAHQAPLAAIVLSS-NGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQ 239 (342)
Q Consensus 168 ~~-------~~~~~~~~h~~~v~~i~~s~-dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~ 239 (342)
.+ .+...+.+|...|.++.|+| -.+.||+++.|-+ |++||+++++....+..+ ...|.+++|||||+
T Consensus 659 a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~T-i~lWDl~~~~~~~~l~gH--tdqIf~~AWSpdGr-- 733 (1012)
T KOG1445|consen 659 ANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDST-IELWDLANAKLYSRLVGH--TDQIFGIAWSPDGR-- 733 (1012)
T ss_pred cCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccce-eeeeehhhhhhhheeccC--cCceeEEEECCCCc--
Confidence 43 34567889999999999999 4578999999987 699999999988888654 45699999999999
Q ss_pred cEEEEEeCCCcEEEEecCCCCCC
Q 019349 240 DILVATSSSGSLHVFSPGFAINQ 262 (342)
Q Consensus 240 ~~l~~~s~dg~i~vwd~~~~~~~ 262 (342)
.+|+.+.||+|+||+-+....+
T Consensus 734 -~~AtVcKDg~~rVy~Prs~e~p 755 (1012)
T KOG1445|consen 734 -RIATVCKDGTLRVYEPRSREQP 755 (1012)
T ss_pred -ceeeeecCceEEEeCCCCCCCc
Confidence 9999999999999998765543
No 176
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.63 E-value=6.8e-14 Score=120.35 Aligned_cols=298 Identities=10% Similarity=0.060 Sum_probs=183.4
Q ss_pred CCCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCC------c-EEEEEeeCCEEEEEEcCCC-CeEEEEcCCCCCCCCCC
Q 019349 5 SSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTG------R-LCYERAVGAFSIVEMLYSS-SLLAIVGAGEQPSLSPR 75 (342)
Q Consensus 5 ~~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~------~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~d~ 75 (342)
.|.+-|+++.|+.++++||+|+++. .++|+.+.. + +....+.+.-.+.++.++. +..++.|+ .++
T Consensus 54 ~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~------~~~ 127 (609)
T KOG4227|consen 54 EHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGE------RWG 127 (609)
T ss_pred hhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCC------Ccc
Confidence 4567799999999999999999987 599997532 1 1122222323334444443 44444444 689
Q ss_pred eEEEEECCCCcEEEEEecCC---ceEEEEEcCC--eEEEEE-CCeEEEEECCCCce-eeEEeCCCCCceEEEEeeCCCc-
Q 019349 76 RLCLFNTTTGTALRELNFLT---SILAVRLNKK--RLVIVL-REKTYIYDANTLAI-LDTIDTVPNLKGLCAFSPSLNA- 147 (342)
Q Consensus 76 ~i~iwd~~~~~~~~~~~~~~---~v~~i~~~~~--~~~~~~-d~~i~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~- 147 (342)
+|++.|+++.+.+..+.+.. .|+.+..+|. .+++.+ ++.|.+||.+..+. ..-+-....+......-++|..
T Consensus 128 ~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P 207 (609)
T KOG4227|consen 128 TVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETP 207 (609)
T ss_pred eeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCc
Confidence 99999999999888777654 8999888774 344444 78999999976542 1111111112233344445543
Q ss_pred cEEEEeCCCCccEEEEEEccCCce-eE------EEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCee-EEEec
Q 019349 148 CFLAVPASTTKGSVLVYNVMELHS-HC------EIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATK-SYSFR 219 (342)
Q Consensus 148 ~~l~~~~~~~~g~i~iwd~~~~~~-~~------~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~-~~~~~ 219 (342)
.+|++.. ..|-+.+||.+..+. +. .++.....-..+.|+|+|+.|.+--..---+ +||+.+..+ +..+.
T Consensus 208 ~Li~~~~--~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~-~~D~~S~R~~V~k~D 284 (609)
T KOG4227|consen 208 ALILVNS--ETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPL-YFDFISQRCFVLKSD 284 (609)
T ss_pred eeEEecc--ccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCE-EeeeecccceeEecc
Confidence 3455555 467799999876542 21 1222122336678999999888754332223 788876443 22332
Q ss_pred c---Cc-CceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccc---ccccc-c--ccccccccc
Q 019349 220 R---GT-YPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGS---ILPES-V--NEVLDPADH 289 (342)
Q Consensus 220 ~---~~-~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~---~~~~~-~--~~~~~~~~~ 289 (342)
. +. ....+.+++|-.|-. +++||.+-.|++|.+.......-.. .++- ..|.. + ..+.-..+|
T Consensus 285 ~N~~GY~N~~T~KS~~F~~D~~----v~tGSD~~~i~~WklP~~~ds~G~~----~IG~~~~~~~~~~~i~~~~~VLrGH 356 (609)
T KOG4227|consen 285 HNPNGYCNIKTIKSMTFIDDYT----VATGSDHWGIHIWKLPRANDSYGFT----QIGHDEEEMPSEIFIEKELTVLRGH 356 (609)
T ss_pred CCCCcceeeeeeeeeeeeccee----eeccCcccceEEEecCCCccccCcc----ccCcchhhCchhheecceeEEEecc
Confidence 1 10 123478899987764 9999999999999987654321100 0110 01110 0 112233455
Q ss_pred ceeeeccCCCccccEEEEEEeCCcEEEEEE
Q 019349 290 HVLRNAFPAGVKRASVSVITYNGYFVEYIF 319 (342)
Q Consensus 290 ~~~~~~~~~~~~~~~l~~~~~dg~v~~~~~ 319 (342)
+-....+.|.+..+.|++.+-...+++|.-
T Consensus 357 RSv~NQVRF~~H~~~l~SSGVE~~~KlWS~ 386 (609)
T KOG4227|consen 357 RSVPNQVRFSQHNNLLVSSGVENSFKLWSD 386 (609)
T ss_pred cccccceeecCCcceEeccchhhheecccc
Confidence 556667788888788888888999999963
No 177
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.63 E-value=7.8e-14 Score=125.78 Aligned_cols=245 Identities=16% Similarity=0.188 Sum_probs=168.9
Q ss_pred EEEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEEEEEecCCceEEEEEcCC----eEEEEECCeE
Q 019349 40 LCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRLNKK----RLVIVLREKT 115 (342)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~i~~~~~----~~~~~~d~~i 115 (342)
++|..|.+.+..+...+.+.+++..+ .|++|+||.+.+|+|+..+.+.+.|.+|+|+|. .++++.++.+
T Consensus 394 lvyrGHtg~Vr~iSvdp~G~wlasGs-------dDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~ 466 (733)
T KOG0650|consen 394 LVYRGHTGLVRSISVDPSGEWLASGS-------DDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECV 466 (733)
T ss_pred eeEeccCCeEEEEEecCCcceeeecC-------CCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCce
Confidence 34555666677777777666655433 599999999999999999999999999999875 2334445555
Q ss_pred EEEECCCC---------ceeeEE-------------eC-------------CCCCceEEEEeeCCCccEEEEeCC-CCcc
Q 019349 116 YIYDANTL---------AILDTI-------------DT-------------VPNLKGLCAFSPSLNACFLAVPAS-TTKG 159 (342)
Q Consensus 116 ~i~d~~~~---------~~~~~~-------------~~-------------~~~~~~~~~~~~~~~~~~l~~~~~-~~~g 159 (342)
.|-+-.-| .++... .. -.++..+..+.++..|.+|++... ....
T Consensus 467 ~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~ 546 (733)
T KOG0650|consen 467 LIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNK 546 (733)
T ss_pred EEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcc
Confidence 55443211 011000 00 011223446677778888887642 1346
Q ss_pred EEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcc
Q 019349 160 SVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQ 239 (342)
Q Consensus 160 ~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~ 239 (342)
.|.|+++...+....|.--.+.|.++.|+|.-.+|..++... +|+||+.....++++..+ ...|.+|+.+|.|.
T Consensus 547 ~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~--vRiYdL~kqelvKkL~tg--~kwiS~msihp~GD-- 620 (733)
T KOG0650|consen 547 SVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRS--VRIYDLSKQELVKKLLTG--SKWISSMSIHPNGD-- 620 (733)
T ss_pred eEEEEecccccccCchhhcCCceeEEEecCCCceEEEEeccc--eEEEehhHHHHHHHHhcC--CeeeeeeeecCCCC--
Confidence 799999987776666655567799999999999999998763 589999887777666544 34589999999987
Q ss_pred cEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEEEEEEeCCcEEEEE
Q 019349 240 DILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYI 318 (342)
Q Consensus 240 ~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~ 318 (342)
-|+.++.|+.+..||++-...+-+. +. + |...+..+++.++-+.+++++.||.+++|-
T Consensus 621 -nli~gs~d~k~~WfDldlsskPyk~------lr-~-------------H~~avr~Va~H~ryPLfas~sdDgtv~Vfh 678 (733)
T KOG0650|consen 621 -NLILGSYDKKMCWFDLDLSSKPYKT------LR-L-------------HEKAVRSVAFHKRYPLFASGSDDGTVIVFH 678 (733)
T ss_pred -eEEEecCCCeeEEEEcccCcchhHH------hh-h-------------hhhhhhhhhhccccceeeeecCCCcEEEEe
Confidence 7999999999999999876543210 00 0 111223445556667788888899999885
No 178
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.62 E-value=6.3e-14 Score=133.71 Aligned_cols=239 Identities=15% Similarity=0.228 Sum_probs=160.4
Q ss_pred CCCCeEEEEEcC--CCCEEEEEcCCcE-EEEeC-CCC----cEEEEE---e------eCCEEEEEEcCCCCeEEEEcCCC
Q 019349 6 SSYPVFFVSFNQ--DNSGFALSTKDGF-KIFDS-STG----RLCYER---A------VGAFSIVEMLYSSSLLAIVGAGE 68 (342)
Q Consensus 6 ~~~~V~~l~fs~--d~~~la~g~~~g~-~v~d~-~~~----~~~~~~---~------~~~~~~~~~~~~~~~~~~~~~g~ 68 (342)
....|+.+.+-. |..+|.+|+.||+ |||+- .+. +++-.. . .+.-.+++|...+..+.+.|+
T Consensus 1108 ~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd-- 1185 (1387)
T KOG1517|consen 1108 PDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGD-- 1185 (1387)
T ss_pred CCCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCC--
Confidence 456788888764 4456888988885 99963 222 222111 0 011245666666666655443
Q ss_pred CCCCCCCeEEEEECCCCcEEEEEecCC--ceEEEEEc--CCeEEEEE--CCeEEEEECCCC---ceeeEEeCCCCCceEE
Q 019349 69 QPSLSPRRLCLFNTTTGTALRELNFLT--SILAVRLN--KKRLVIVL--REKTYIYDANTL---AILDTIDTVPNLKGLC 139 (342)
Q Consensus 69 ~~~~~d~~i~iwd~~~~~~~~~~~~~~--~v~~i~~~--~~~~~~~~--d~~i~i~d~~~~---~~~~~~~~~~~~~~~~ 139 (342)
-+.|+|||+.+.+....+...+ -|+++.-+ ...+++++ ||.+++||.+.. ..+...+.|.....++
T Consensus 1186 -----~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv 1260 (1387)
T KOG1517|consen 1186 -----VRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIV 1260 (1387)
T ss_pred -----eeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccce
Confidence 6899999999888888876654 45555432 22455555 999999999753 2445555555554566
Q ss_pred EEeeCCCccE-EEEeCCCCccEEEEEEccCCce--eEEEeccc--C-CeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCe
Q 019349 140 AFSPSLNACF-LAVPASTTKGSVLVYNVMELHS--HCEIDAHQ--A-PLAAIVLSSNGMYIATASEQGTIIRVFLVSEAT 213 (342)
Q Consensus 140 ~~~~~~~~~~-l~~~~~~~~g~i~iwd~~~~~~--~~~~~~h~--~-~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~ 213 (342)
-++..+++.. |++++ .+|.|++||++.... ..++..|. + .++++..++....+|+|+. + .|+||++. |+
T Consensus 1261 ~~slq~~G~~elvSgs--~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q-~ikIy~~~-G~ 1335 (1387)
T KOG1517|consen 1261 HLSLQRQGLGELVSGS--QDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-Q-LIKIYSLS-GE 1335 (1387)
T ss_pred eEEeecCCCcceeeec--cCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-c-eEEEEecC-hh
Confidence 6665554433 65555 799999999987422 23333443 3 5999999999999999997 4 47999985 55
Q ss_pred eEEEecc-----CcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCC
Q 019349 214 KSYSFRR-----GTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFA 259 (342)
Q Consensus 214 ~~~~~~~-----~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~ 259 (342)
++..++. +.....+.||+|+|-.- +||+|+.|.+|.||....+
T Consensus 1336 ~l~~~k~n~~F~~q~~gs~scL~FHP~~~---llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1336 QLNIIKYNPGFMGQRIGSVSCLAFHPHRL---LLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred hhcccccCcccccCcCCCcceeeecchhH---hhhhccCCceEEEeecCCc
Confidence 5554432 12234589999999988 8999999999999987654
No 179
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.62 E-value=1.1e-12 Score=123.19 Aligned_cols=288 Identities=14% Similarity=0.152 Sum_probs=184.0
Q ss_pred CeEEEEEcCCCCEEEEEcCCc-EEEEe-CC-CC-c---EEEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEE
Q 019349 9 PVFFVSFNQDNSGFALSTKDG-FKIFD-SS-TG-R---LCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFN 81 (342)
Q Consensus 9 ~V~~l~fs~d~~~la~g~~~g-~~v~d-~~-~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd 81 (342)
.++|.+++|.++++|+|..+| +.+|. .. .. . .++..|...+....+..++.++...| ..+.+.+|.
T Consensus 207 ~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG-------~E~VLv~Wq 279 (792)
T KOG1963|consen 207 NITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGG-------REGVLVLWQ 279 (792)
T ss_pred cceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecc-------cceEEEEEe
Confidence 478999999999999998888 78885 33 11 1 12344555677677766666654433 478999999
Q ss_pred CCCCcEEEEEecCCceEEEEEcCCeEEEE---ECCeEEEEECCCCceeeEEeCCCCC--------c-eEEEEeeCCCccE
Q 019349 82 TTTGTALRELNFLTSILAVRLNKKRLVIV---LREKTYIYDANTLAILDTIDTVPNL--------K-GLCAFSPSLNACF 149 (342)
Q Consensus 82 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~--------~-~~~~~~~~~~~~~ 149 (342)
+.+++...--+..++|..+.++++.-..+ .|++|.+-...+.....++.....+ . -...++.+|.-..
T Consensus 280 ~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~ 359 (792)
T KOG1963|consen 280 LETGKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNS 359 (792)
T ss_pred ecCCCcccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCc
Confidence 99998544446678999999998854443 3999999988776555554322111 1 1234455554456
Q ss_pred EEEeCCCCccEEEEEEccCCceeEEEe-----------cccCCeeEEEECCCCCEEEEEeC--------CCc-EEEEEEc
Q 019349 150 LAVPASTTKGSVLVYNVMELHSHCEID-----------AHQAPLAAIVLSSNGMYIATASE--------QGT-IIRVFLV 209 (342)
Q Consensus 150 l~~~~~~~~g~i~iwd~~~~~~~~~~~-----------~h~~~v~~i~~s~dg~~lat~s~--------dg~-~irlwd~ 209 (342)
++..+ ..|.|++||+-+.+.+..+. .+.-.+++++.+..|++++|.-. ||. .+|+|-.
T Consensus 360 ~vln~--~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~ 437 (792)
T KOG1963|consen 360 LVLNG--HPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQY 437 (792)
T ss_pred eeecC--CCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEE
Confidence 77777 57999999998777665443 12345888999999999999732 332 2578876
Q ss_pred CCCeeE----EEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCcccc--cccccccccccc
Q 019349 210 SEATKS----YSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSI--LGSILPESVNEV 283 (342)
Q Consensus 210 ~~~~~~----~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 283 (342)
.....- .++...+..+.+..+.++|... +..++++.||.++||-+...++..+....+.+ ++.|
T Consensus 438 n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs--~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy-------- 507 (792)
T KOG1963|consen 438 NPNSKTFILNTKINNPHGNAFVATIFLNPTRS--VRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSY-------- 507 (792)
T ss_pred cCCcceeEEEEEEecCCCceeEEEEEecCccc--ceeEEeccCCeEEEEEEecccccCcCccceEEeeeecc--------
Confidence 544322 2222222233333333444333 37999999999999999776654432211111 1111
Q ss_pred ccccccceeeeccCCCccccEEEEEEeCCcEEEEEEec
Q 019349 284 LDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSI 321 (342)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~~~~ 321 (342)
++.......|..+ ..+++++.|+.|.+|+.+.
T Consensus 508 -----~k~~i~a~~fs~d-Gslla~s~~~~Itiwd~~~ 539 (792)
T KOG1963|consen 508 -----HKTPITALCFSQD-GSLLAVSFDDTITIWDYDT 539 (792)
T ss_pred -----ccCcccchhhcCC-CcEEEEecCCEEEEecCCC
Confidence 1111122233333 4899999999999998765
No 180
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.60 E-value=1.2e-12 Score=111.97 Aligned_cols=215 Identities=13% Similarity=0.127 Sum_probs=150.9
Q ss_pred eEEEEECCCCcEEEEEe-cCCceEEEEEcCCeEEEEE---CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEE
Q 019349 76 RLCLFNTTTGTALRELN-FLTSILAVRLNKKRLVIVL---REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLA 151 (342)
Q Consensus 76 ~i~iwd~~~~~~~~~~~-~~~~v~~i~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 151 (342)
.-+++............ ....|..+-|+...++++. .+.+++++++.+..+..+..+ ..+.++-.+-+ .|+
T Consensus 27 Gyk~~~~~~~~k~~~~~~~~~~IvEmLFSSSLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~fp---t~IL~VrmNr~--RLv 101 (391)
T KOG2110|consen 27 GYKIFSCSPFEKCFSKDTEGVSIVEMLFSSSLVAIVSIKQPRKLKVVHFKKKTTICEIFFP---TSILAVRMNRK--RLV 101 (391)
T ss_pred ceeEEecCchHHhhcccCCCeEEEEeecccceeEEEecCCCceEEEEEcccCceEEEEecC---CceEEEEEccc--eEE
Confidence 34666654433221111 2235677778888888877 237999999888777776543 34666665433 444
Q ss_pred EeCCCCccEEEEEEccCCceeEEEe---cccCCeeEEEECCCCCEEEEEeC--CCcEEEEEEcCCCeeEEEeccCcCcee
Q 019349 152 VPASTTKGSVLVYNVMELHSHCEID---AHQAPLAAIVLSSNGMYIATASE--QGTIIRVFLVSEATKSYSFRRGTYPST 226 (342)
Q Consensus 152 ~~~~~~~g~i~iwd~~~~~~~~~~~---~h~~~v~~i~~s~dg~~lat~s~--dg~~irlwd~~~~~~~~~~~~~~~~~~ 226 (342)
++- .+.|.|||+++.+.+.++. .|...+.++++++++.+||--+. -|.+ .|||+.+-+.+..+. .|.++
T Consensus 102 V~L---ee~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV-~l~d~~nl~~v~~I~--aH~~~ 175 (391)
T KOG2110|consen 102 VCL---EESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDV-VLFDTINLQPVNTIN--AHKGP 175 (391)
T ss_pred EEE---cccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceE-EEEEcccceeeeEEE--ecCCc
Confidence 443 3559999999999888775 45666777777778889987542 3665 699999999888886 35678
Q ss_pred EEEEEEecCCCcccEEEEEeCCCc-EEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEE
Q 019349 227 IFSLSFGQSMQFQDILVATSSSGS-LHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASV 305 (342)
Q Consensus 227 v~~l~fs~d~~~~~~l~~~s~dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 305 (342)
+-+|+|+|+|. +||++|+.|| ||||.+..+....... .+..+ ...+.++|.++...|
T Consensus 176 lAalafs~~G~---llATASeKGTVIRVf~v~~G~kl~eFR------RG~~~-------------~~IySL~Fs~ds~~L 233 (391)
T KOG2110|consen 176 LAALAFSPDGT---LLATASEKGTVIRVFSVPEGQKLYEFR------RGTYP-------------VSIYSLSFSPDSQFL 233 (391)
T ss_pred eeEEEECCCCC---EEEEeccCceEEEEEEcCCccEeeeee------CCcee-------------eEEEEEEECCCCCeE
Confidence 99999999999 9999999999 7999998776543211 11111 122344556666899
Q ss_pred EEEEeCCcEEEEEEecCC
Q 019349 306 SVITYNGYFVEYIFSINN 323 (342)
Q Consensus 306 ~~~~~dg~v~~~~~~~~~ 323 (342)
.+.|..++|++|.++...
T Consensus 234 ~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 234 AASSNTETVHIFKLEKVS 251 (391)
T ss_pred EEecCCCeEEEEEecccc
Confidence 999999999999997654
No 181
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.60 E-value=8.3e-14 Score=124.17 Aligned_cols=262 Identities=14% Similarity=0.134 Sum_probs=171.3
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEcCCcEEEE-eCCCCcEE-EEEeeCCEE---EEEEc-----CCCCeEEEEcCCCCCCCC
Q 019349 4 QSSSYPVFFVSFNQDNSGFALSTKDGFKIF-DSSTGRLC-YERAVGAFS---IVEML-----YSSSLLAIVGAGEQPSLS 73 (342)
Q Consensus 4 ~~~~~~V~~l~fs~d~~~la~g~~~g~~v~-d~~~~~~~-~~~~~~~~~---~~~~~-----~~~~~~~~~~~g~~~~~~ 73 (342)
+.+..-|.|+.|+.....+.+++++-+.+| |+.+.... ......-+. ...-. ..++.+++++ +
T Consensus 11 ~r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s-------~ 83 (737)
T KOG1524|consen 11 NRNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICS-------N 83 (737)
T ss_pred cccceeEEeecccccceEEEeccCceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEc-------C
Confidence 355667889999998888888888877554 55433211 111100011 00000 0123344554 4
Q ss_pred CCeEEEEECCCCcEEEEEe-cCCceEEEEEcCCeEEEEE---CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccE
Q 019349 74 PRRLCLFNTTTGTALRELN-FLTSILAVRLNKKRLVIVL---REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACF 149 (342)
Q Consensus 74 d~~i~iwd~~~~~~~~~~~-~~~~v~~i~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (342)
|+++.+.+ +.++....+. +.+.+.+-.|++++..+.+ ||.|++|.-..+ +++. ...+...+.|+++.|+...
T Consensus 84 DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGM--LRSt-l~Q~~~~v~c~~W~p~S~~ 159 (737)
T KOG1524|consen 84 DGRFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGM--LRST-VVQNEESIRCARWAPNSNS 159 (737)
T ss_pred CceEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccch--HHHH-HhhcCceeEEEEECCCCCc
Confidence 88888876 4455444444 4457888899998654443 899999985432 2221 1123456888888888777
Q ss_pred EEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEE
Q 019349 150 LAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFS 229 (342)
Q Consensus 150 l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~ 229 (342)
++++. .+.+.|=.+.....+..+++|.+-|.++.|++..+.+++|++|-+ .++||.. |+.++.-. .+..+|++
T Consensus 160 vl~c~---g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~k-fKvWD~~-G~~Lf~S~--~~ey~ITS 232 (737)
T KOG1524|consen 160 IVFCQ---GGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFR-FKIWDAQ-GANLFTSA--AEEYAITS 232 (737)
T ss_pred eEEec---CCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCcee-EEeeccc-CcccccCC--hhccceee
Confidence 77764 367888777777677789999999999999999999999999988 5999975 66655443 34556999
Q ss_pred EEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEEEEEE
Q 019349 230 LSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVIT 309 (342)
Q Consensus 230 l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 309 (342)
++|+|| + .++.+|. ++.+ ++.+ + .+ ..+.-.|++++ .++..++
T Consensus 233 va~npd-~---~~~v~S~-nt~R---~~~p---~--------~G----SifnlsWS~DG--------------TQ~a~gt 275 (737)
T KOG1524|consen 233 VAFNPE-K---DYLLWSY-NTAR---FSSP---R--------VG----SIFNLSWSADG--------------TQATCGT 275 (737)
T ss_pred eeeccc-c---ceeeeee-eeee---ecCC---C--------cc----ceEEEEEcCCC--------------ceeeccc
Confidence 999999 5 5666664 3555 2211 1 12 23455788877 7899999
Q ss_pred eCCcEE-EEEEe
Q 019349 310 YNGYFV-EYIFS 320 (342)
Q Consensus 310 ~dg~v~-~~~~~ 320 (342)
+.|.+. .|.++
T Consensus 276 ~~G~v~~A~~ie 287 (737)
T KOG1524|consen 276 STGQLIVAYAIE 287 (737)
T ss_pred cCceEEEeeeeh
Confidence 999854 34443
No 182
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.60 E-value=5.9e-12 Score=115.13 Aligned_cols=236 Identities=16% Similarity=0.238 Sum_probs=161.5
Q ss_pred eCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCc-EEEEEec-CC-ceEEEEE-cCCeE--EEEE---CCeEE
Q 019349 46 VGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGT-ALRELNF-LT-SILAVRL-NKKRL--VIVL---REKTY 116 (342)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~-~~~~~~~-~~-~v~~i~~-~~~~~--~~~~---d~~i~ 116 (342)
...+..+.+......+...+ .++.+.+|+...+. .+..+.. .. .+..+.. .++.. +... ++.++
T Consensus 65 ~~~i~~~~~~~~~~~~~~~~-------~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 137 (466)
T COG2319 65 EDSITSIAFSPDGELLLSGS-------SDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVK 137 (466)
T ss_pred cceEEEEEECCCCcEEEEec-------CCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEE
Confidence 34555555555555555554 38999999998886 5555554 22 5666665 44433 2221 67999
Q ss_pred EEECCC-CceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCC-EE
Q 019349 117 IYDANT-LAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGM-YI 194 (342)
Q Consensus 117 i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~-~l 194 (342)
+|++.. ......+..+.. .+.+++..+++..++.++. .++.+++|++..++.+..+..|...|.+++|+|++. .+
T Consensus 138 ~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 214 (466)
T COG2319 138 LWDLSTPGKLIRTLEGHSE--SVTSLAFSPDGKLLASGSS-LDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLI 214 (466)
T ss_pred EEEecCCCeEEEEEecCcc--cEEEEEECCCCCEEEecCC-CCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEE
Confidence 999988 666666666544 3446677777777777653 389999999999888899999999999999999998 66
Q ss_pred EEEeCCCcEEEEEEcCCCeeEE-EeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCC-CCCCCCccccc
Q 019349 195 ATASEQGTIIRVFLVSEATKSY-SFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAIN-QRRGGRTSSIL 272 (342)
Q Consensus 195 at~s~dg~~irlwd~~~~~~~~-~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~-~~~~~~~~~~~ 272 (342)
++++.|+.+ ++||...+..+. .+..+. ... ...|+|++. ++++++.|+.+++|++..... ... +
T Consensus 215 ~~~~~d~~i-~~wd~~~~~~~~~~~~~~~--~~~-~~~~~~~~~---~~~~~~~d~~~~~~~~~~~~~~~~~-------~ 280 (466)
T COG2319 215 ASGSSDGTI-RLWDLSTGKLLRSTLSGHS--DSV-VSSFSPDGS---LLASGSSDGTIRLWDLRSSSSLLRT-------L 280 (466)
T ss_pred EEecCCCcE-EEEECCCCcEEeeecCCCC--cce-eEeECCCCC---EEEEecCCCcEEEeeecCCCcEEEE-------E
Confidence 666899985 799998787776 454332 222 228999997 899999999999999886553 110 0
Q ss_pred cccccccccccccccccceeeeccCCCccccEEEEEEeCCcEEEEEE
Q 019349 273 GSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIF 319 (342)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~~ 319 (342)
...........|. +....+++++.|+.+.+|++
T Consensus 281 ~~~~~~v~~~~~~--------------~~~~~~~~~~~d~~~~~~~~ 313 (466)
T COG2319 281 SGHSSSVLSVAFS--------------PDGKLLASGSSDGTVRLWDL 313 (466)
T ss_pred ecCCccEEEEEEC--------------CCCCEEEEeeCCCcEEEEEc
Confidence 0000011111233 33367888888988999944
No 183
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.59 E-value=6.8e-13 Score=110.07 Aligned_cols=176 Identities=9% Similarity=0.211 Sum_probs=126.4
Q ss_pred CeEEEEECCCCc---------EEEEEe--cCCceEEEEEcCCeEEEEE--CCeEEEEECCCCce-eeEEeCCCCC---ce
Q 019349 75 RRLCLFNTTTGT---------ALRELN--FLTSILAVRLNKKRLVIVL--REKTYIYDANTLAI-LDTIDTVPNL---KG 137 (342)
Q Consensus 75 ~~i~iwd~~~~~---------~~~~~~--~~~~v~~i~~~~~~~~~~~--d~~i~i~d~~~~~~-~~~~~~~~~~---~~ 137 (342)
..+.||.+.... ++..+. ..+.|.++.|.|+..-+++ |+.|.+|++..... +..+...... ..
T Consensus 93 ~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ 172 (370)
T KOG1007|consen 93 TGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMDDNNIVLWSLDESSKIVAEVLSSESAEMRHS 172 (370)
T ss_pred eeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEeccCceEEEEcccCcchheeecccccccccce
Confidence 346799875432 222222 2347899999887654444 88999999987644 4444322211 12
Q ss_pred E--EEEeeCCCccEEEEeCCCCccEEEEEEccCCceeEEEe-cccCCeeEEEECCCCC-EEEEEeCCCcEEEEEEcCCCe
Q 019349 138 L--CAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEID-AHQAPLAAIVLSSNGM-YIATASEQGTIIRVFLVSEAT 213 (342)
Q Consensus 138 ~--~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~-~h~~~v~~i~~s~dg~-~lat~s~dg~~irlwd~~~~~ 213 (342)
. -..+|+.++..+++.+ +++++.||+++.++...+. +|...|..+.|+|+-+ +||||++||. +|+||.+.-+
T Consensus 173 ftsg~WspHHdgnqv~tt~---d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgy-vriWD~R~tk 248 (370)
T KOG1007|consen 173 FTSGAWSPHHDGNQVATTS---DSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGY-VRIWDTRKTK 248 (370)
T ss_pred ecccccCCCCccceEEEeC---CCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCcc-EEEEeccCCC
Confidence 2 2455666888888875 7999999999888776664 7999999999999764 5899999997 6999998654
Q ss_pred -eEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCC
Q 019349 214 -KSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGF 258 (342)
Q Consensus 214 -~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~ 258 (342)
.+.++.. +..-|+++.|+|... .++++++.|..|.+|....
T Consensus 249 ~pv~el~~--HsHWvW~VRfn~~hd--qLiLs~~SDs~V~Lsca~s 290 (370)
T KOG1007|consen 249 FPVQELPG--HSHWVWAVRFNPEHD--QLILSGGSDSAVNLSCASS 290 (370)
T ss_pred ccccccCC--CceEEEEEEecCccc--eEEEecCCCceeEEEeccc
Confidence 4555543 355699999999754 2899999999999998654
No 184
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.57 E-value=1.6e-12 Score=121.46 Aligned_cols=261 Identities=11% Similarity=0.094 Sum_probs=160.4
Q ss_pred EEEEeCCCC-cEEEEEe-eCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcE--E-----EEEecCCceEEE
Q 019349 30 FKIFDSSTG-RLCYERA-VGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTA--L-----RELNFLTSILAV 100 (342)
Q Consensus 30 ~~v~d~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~--~-----~~~~~~~~v~~i 100 (342)
+.||++... ...+... ...+.++.+.+....++++|. .+|.|.+||++.+.. . ....+..++..+
T Consensus 224 ~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~------y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~v 297 (555)
T KOG1587|consen 224 LLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGC------YNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAV 297 (555)
T ss_pred EEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeec------cCceEEEEEccCCCCCCCcccccccccCCcCeEEE
Confidence 578887654 2222222 245666666665555555554 589999999987654 2 223456688888
Q ss_pred EEcCC----eEEEEE-CCeEEEEECCCCce-eeEE--eCC-------CCCceEEEEeeCCCccEEEEeCCCCccEEEEEE
Q 019349 101 RLNKK----RLVIVL-REKTYIYDANTLAI-LDTI--DTV-------PNLKGLCAFSPSLNACFLAVPASTTKGSVLVYN 165 (342)
Q Consensus 101 ~~~~~----~~~~~~-d~~i~i~d~~~~~~-~~~~--~~~-------~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd 165 (342)
.|..+ .++.++ ||.|..|+++.... .... ... ....+..++.+.+........|. ..|.|.--+
T Consensus 298 vW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGT-e~G~v~~~~ 376 (555)
T KOG1587|consen 298 VWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGT-EEGKVYKGC 376 (555)
T ss_pred EEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEc-CCcEEEEEe
Confidence 87432 244444 99999998875432 1111 111 11234455555443322233333 578888744
Q ss_pred ccCCc--------eeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcC-CCeeEEEeccCcCceeEEEEEEecCC
Q 019349 166 VMELH--------SHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVS-EATKSYSFRRGTYPSTIFSLSFGQSM 236 (342)
Q Consensus 166 ~~~~~--------~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~-~~~~~~~~~~~~~~~~v~~l~fs~d~ 236 (342)
....+ ....+..|.++|+++.++|=+..+...+.|.+ +|||.-. ....+..+... ...|++++|||-.
T Consensus 377 r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~-vriWs~~~~~~Pl~~~~~~--~~~v~~vaWSptr 453 (555)
T KOG1587|consen 377 RKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWT-VRIWSEDVIASPLLSLDSS--PDYVTDVAWSPTR 453 (555)
T ss_pred ccCCcccccccccccccccccCcceEeeecCCCccceeeeeccce-eEeccccCCCCcchhhhhc--cceeeeeEEcCcC
Confidence 32221 23355678999999999997765554444777 5899987 55555555432 4459999999988
Q ss_pred CcccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEEEEEEeCCcEEE
Q 019349 237 QFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVE 316 (342)
Q Consensus 237 ~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~ 316 (342)
.. .|+++..||.|.|||+......+...+.-. ...+ ....|++.+ ..|++|...|.+++
T Consensus 454 pa--vF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~--~~~l---~~~~~s~~g--------------~~lavGd~~G~~~~ 512 (555)
T KOG1587|consen 454 PA--VFATVDGDGNLDIWDLLQDDEEPVLSQKVC--SPAL---TRVRWSPNG--------------KLLAVGDANGTTHI 512 (555)
T ss_pred ce--EEEEEcCCCceehhhhhccccCCccccccc--cccc---ceeecCCCC--------------cEEEEecCCCcEEE
Confidence 62 889999999999999976654332111111 1111 122444433 67999999999999
Q ss_pred EEEec
Q 019349 317 YIFSI 321 (342)
Q Consensus 317 ~~~~~ 321 (342)
|.+.+
T Consensus 513 ~~l~~ 517 (555)
T KOG1587|consen 513 LKLSE 517 (555)
T ss_pred EEcCc
Confidence 99853
No 185
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.56 E-value=1.7e-13 Score=118.91 Aligned_cols=199 Identities=14% Similarity=0.179 Sum_probs=138.7
Q ss_pred EEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEE-EEEecCCceEEEEEcCCeEEEEE--CCeEEEEECCCCcee
Q 019349 50 SIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTAL-RELNFLTSILAVRLNKKRLVIVL--REKTYIYDANTLAIL 126 (342)
Q Consensus 50 ~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~-~~~~~~~~v~~i~~~~~~~~~~~--d~~i~i~d~~~~~~~ 126 (342)
.++++..++..+++.+. |+++|+|+..+...+ .+..++.+|.++.|+++...+++ .+..+||+.+++-.+
T Consensus 148 k~vaf~~~gs~latgg~-------dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d~~~VW~~~~g~~~ 220 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGT-------DGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGADSARVWSVNTGAAL 220 (398)
T ss_pred eEEEEcCCCCEeeeccc-------cceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCCceEEEEeccCchh
Confidence 45566666666666654 999999996555544 45567789999999999866655 449999999998665
Q ss_pred eEEeCCCCCc--eEEEEeeCC--CccEEEEeCCCCccEEEEEEccCCc-----eeEEEecccCCeeEEEECCCCCEEEEE
Q 019349 127 DTIDTVPNLK--GLCAFSPSL--NACFLAVPASTTKGSVLVYNVMELH-----SHCEIDAHQAPLAAIVLSSNGMYIATA 197 (342)
Q Consensus 127 ~~~~~~~~~~--~~~~~~~~~--~~~~l~~~~~~~~g~i~iwd~~~~~-----~~~~~~~h~~~v~~i~~s~dg~~lat~ 197 (342)
........+. ..|-+..++ +..++|+.-. .-+.|+.||+..-+ +.+....-...|+++++|+||+++|.|
T Consensus 221 a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~-~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlG 299 (398)
T KOG0771|consen 221 ARKTPFSKDEMFSSCRFSVDNAQETLRLAASQF-PGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALG 299 (398)
T ss_pred hhcCCcccchhhhhceecccCCCceEEEEEecC-CCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEe
Confidence 5543222211 122233222 2234444333 45667777763221 111111223469999999999999999
Q ss_pred eCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCC
Q 019349 198 SEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAIN 261 (342)
Q Consensus 198 s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~ 261 (342)
+.||.+ -+++..+.+.++-.+. .|..-|+.+.|+||.+ ++++.+.+.+++|..+...+.
T Consensus 300 T~dGsV-ai~~~~~lq~~~~vk~-aH~~~VT~ltF~Pdsr---~~~svSs~~~~~v~~l~vd~~ 358 (398)
T KOG0771|consen 300 TMDGSV-AIYDAKSLQRLQYVKE-AHLGFVTGLTFSPDSR---YLASVSSDNEAAVTKLAVDKT 358 (398)
T ss_pred ccCCcE-EEEEeceeeeeEeehh-hheeeeeeEEEcCCcC---cccccccCCceeEEEEeeccc
Confidence 999986 6999999888876654 4566799999999999 999999999999999877543
No 186
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.56 E-value=1.3e-14 Score=135.20 Aligned_cols=246 Identities=15% Similarity=0.180 Sum_probs=173.4
Q ss_pred CCCCCeEEEEEcCCCCEEEEEcCCcE-EEEeCCCCcEEEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECC
Q 019349 5 SSSYPVFFVSFNQDNSGFALSTKDGF-KIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTT 83 (342)
Q Consensus 5 ~~~~~V~~l~fs~d~~~la~g~~~g~-~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~ 83 (342)
.|-..|+|+.|...|.++.+|+++-+ +||..++..++.....+.-.+..+.-+.+.+.++++ +.|..|++|-+.
T Consensus 188 gH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaa-----S~D~vIrvWrl~ 262 (1113)
T KOG0644|consen 188 GHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAA-----SNDKVIRVWRLP 262 (1113)
T ss_pred hhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhc-----ccCceEEEEecC
Confidence 35567999999999999999999986 999998887776655444444555555555555555 368899999999
Q ss_pred CCcEEEEEe-cCCceEEEEEcCCeEEEEECCeEEEEECC-CC-------------ceeeEEeCCCCC-------------
Q 019349 84 TGTALRELN-FLTSILAVRLNKKRLVIVLREKTYIYDAN-TL-------------AILDTIDTVPNL------------- 135 (342)
Q Consensus 84 ~~~~~~~~~-~~~~v~~i~~~~~~~~~~~d~~i~i~d~~-~~-------------~~~~~~~~~~~~------------- 135 (342)
.+.++..+. +.+.|++|+|+|-. ....||++++||.+ .. .++..+....+.
T Consensus 263 ~~~pvsvLrghtgavtaiafsP~~-sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~ 341 (1113)
T KOG0644|consen 263 DGAPVSVLRGHTGAVTAIAFSPRA-SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEAR 341 (1113)
T ss_pred CCchHHHHhccccceeeeccCccc-cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCcccc
Confidence 999887764 56799999999875 11228899999987 11 111111000000
Q ss_pred -ceEEEEeeCCCccEEEE----------eCCCCccEEEEEEccCCceeEEEecccCCeeEEEECC-CCCEEEEEeCCCcE
Q 019349 136 -KGLCAFSPSLNACFLAV----------PASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSS-NGMYIATASEQGTI 203 (342)
Q Consensus 136 -~~~~~~~~~~~~~~l~~----------~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~-dg~~lat~s~dg~~ 203 (342)
...-++++..+...+++ ... .+-.+.+|++.++...+.+.+|...+..+.++| +-....+++.||..
T Consensus 342 n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar-~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst 420 (1113)
T KOG0644|consen 342 NHEFEQLAWRSNLLIFVTRSSDLSSIVVTAR-NDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGST 420 (1113)
T ss_pred cchhhHhhhhccceEEEeccccccccceeee-eeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCce
Confidence 00001111111111111 111 356678899999999999999999999999999 44556789999997
Q ss_pred EEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCC
Q 019349 204 IRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQR 263 (342)
Q Consensus 204 irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~ 263 (342)
| |||+..|.+++.+..+ ..++..-.||+||+ .++....-|.++|......+..+
T Consensus 421 ~-iwdi~eg~pik~y~~g--h~kl~d~kFSqdgt---s~~lsd~hgql~i~g~gqs~s~k 474 (1113)
T KOG0644|consen 421 I-IWDIWEGIPIKHYFIG--HGKLVDGKFSQDGT---SIALSDDHGQLYILGTGQSKSQK 474 (1113)
T ss_pred E-eeecccCCcceeeecc--cceeeccccCCCCc---eEecCCCCCceEEeccCCCcccc
Confidence 6 9999999887776644 44577889999999 88888888999999876655443
No 187
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.56 E-value=2e-12 Score=116.43 Aligned_cols=276 Identities=16% Similarity=0.162 Sum_probs=179.8
Q ss_pred CCCCeEEEEEcCCCCEE-EEEcCCc-EEEEeCCCCcEEEEEeeCC-EEEEEEcC-CCCeEEEEcCCCCCCCCCCeEEEEE
Q 019349 6 SSYPVFFVSFNQDNSGF-ALSTKDG-FKIFDSSTGRLCYERAVGA-FSIVEMLY-SSSLLAIVGAGEQPSLSPRRLCLFN 81 (342)
Q Consensus 6 ~~~~V~~l~fs~d~~~l-a~g~~~g-~~v~d~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~g~~~~~~d~~i~iwd 81 (342)
.+..-+.|..+|||+|+ |+|.-+- +++||+.+..+.++.+... +.-+.++. +-...++.- .|++|.+..
T Consensus 50 ~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~-------~DR~IefHa 122 (703)
T KOG2321|consen 50 MPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQ-------NDRTIEFHA 122 (703)
T ss_pred CccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEee-------cCceeeehh
Confidence 34556789999999986 5665554 7999999988888876532 22222222 223333433 367766543
Q ss_pred CCCCcEEEEEecCCceEEEEEc---CCeEEEEECCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCc
Q 019349 82 TTTGTALRELNFLTSILAVRLN---KKRLVIVLREKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTK 158 (342)
Q Consensus 82 ~~~~~~~~~~~~~~~v~~i~~~---~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 158 (342)
. -| .-..+..|..-.+++.+ -+.+++++...|+-+|++.|+.+..+.+......+ +..++...+|++++ .+
T Consensus 123 k-~G-~hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~--v~in~~hgLla~Gt--~~ 196 (703)
T KOG2321|consen 123 K-YG-RHYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNV--VSINEEHGLLACGT--ED 196 (703)
T ss_pred h-cC-eeeeeecCcCCccccccCCCccEEEeecCcceEEEEcccccccccccccccccee--eeecCccceEEecc--cC
Confidence 2 22 12233334444556554 34555555779999999999999888776554444 44455556777766 69
Q ss_pred cEEEEEEccCCceeEEEec------ccC-----CeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeE
Q 019349 159 GSVLVYNVMELHSHCEIDA------HQA-----PLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTI 227 (342)
Q Consensus 159 g~i~iwd~~~~~~~~~~~~------h~~-----~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v 227 (342)
|.|..||.+....+.++.. |.. .|+++.|+.||-.++.|..+|.+ .|+|+++.+++..- .+...-+|
T Consensus 197 g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v-~iyDLRa~~pl~~k-dh~~e~pi 274 (703)
T KOG2321|consen 197 GVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSV-LIYDLRASKPLLVK-DHGYELPI 274 (703)
T ss_pred ceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcE-EEEEcccCCceeec-ccCCccce
Confidence 9999999988776655542 333 49999999999999999999986 59999998876543 34445578
Q ss_pred EEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEEEE
Q 019349 228 FSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSV 307 (342)
Q Consensus 228 ~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 307 (342)
..+.|.+.+. ++.++ ..+...++|||-.+++... .+-|.. . ...+.+-+....+++
T Consensus 275 ~~l~~~~~~~-q~~v~-S~Dk~~~kiWd~~~Gk~~a----------siEpt~--~----------lND~C~~p~sGm~f~ 330 (703)
T KOG2321|consen 275 KKLDWQDTDQ-QNKVV-SMDKRILKIWDECTGKPMA----------SIEPTS--D----------LNDFCFVPGSGMFFT 330 (703)
T ss_pred eeecccccCC-CceEE-ecchHHhhhcccccCCcee----------eccccC--C----------cCceeeecCCceEEE
Confidence 9999977632 12343 3445679999988776522 121110 0 112222344578889
Q ss_pred EEeCCcEEEEEEe
Q 019349 308 ITYNGYFVEYIFS 320 (342)
Q Consensus 308 ~~~dg~v~~~~~~ 320 (342)
+-.++.+..|-+.
T Consensus 331 Ane~~~m~~yyiP 343 (703)
T KOG2321|consen 331 ANESSKMHTYYIP 343 (703)
T ss_pred ecCCCcceeEEcc
Confidence 9999888888553
No 188
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.56 E-value=4.5e-14 Score=121.86 Aligned_cols=156 Identities=13% Similarity=0.150 Sum_probs=108.0
Q ss_pred eEEEEeeCCCcc-EEEEeCCCCccEEEEEEccCCc---------eeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEE
Q 019349 137 GLCAFSPSLNAC-FLAVPASTTKGSVLVYNVMELH---------SHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRV 206 (342)
Q Consensus 137 ~~~~~~~~~~~~-~l~~~~~~~~g~i~iwd~~~~~---------~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irl 206 (342)
.+..+.+.++.. .+|++| .|..|++|-+...+ .+..+..|...|++|.|+|+|+.||||+++|.+ -+
T Consensus 15 pv~s~dfq~n~~~~laT~G--~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v-~l 91 (434)
T KOG1009|consen 15 PVYSVDFQKNSLNKLATAG--GDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEV-FL 91 (434)
T ss_pred ceEEEEeccCcccceeccc--CccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceE-EE
Confidence 344444444443 889988 58899999885432 234567899999999999999999999999986 59
Q ss_pred EEcC--------C-----C--eeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCcccc
Q 019349 207 FLVS--------E-----A--TKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSI 271 (342)
Q Consensus 207 wd~~--------~-----~--~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~ 271 (342)
|-.. + . -.+....++ +...|+.++|+||+. ++++++.|+++++||+..+........+..+
T Consensus 92 Wk~~~~~~~~~d~e~~~~ke~w~v~k~lr~-h~~diydL~Ws~d~~---~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~y 167 (434)
T KOG1009|consen 92 WKQGDVRIFDADTEADLNKEKWVVKKVLRG-HRDDIYDLAWSPDSN---FLVSGSVDNSVRLWDVHAGQLLAILDDHEHY 167 (434)
T ss_pred EEecCcCCccccchhhhCccceEEEEEecc-cccchhhhhccCCCc---eeeeeeccceEEEEEeccceeEeeccccccc
Confidence 9765 2 1 011111122 456799999999999 9999999999999999988765543333333
Q ss_pred ccccccccccccccccccceeeeccCCCccccEEEEEEeCCcEEEEEEe
Q 019349 272 LGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFS 320 (342)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~~~ 320 (342)
.. ...|+|.. .++++-+.|...+.+.+.
T Consensus 168 vq-------gvawDpl~--------------qyv~s~s~dr~~~~~~~~ 195 (434)
T KOG1009|consen 168 VQ-------GVAWDPLN--------------QYVASKSSDRHPEGFSAK 195 (434)
T ss_pred cc-------eeecchhh--------------hhhhhhccCcccceeeee
Confidence 22 23677755 455555555555555443
No 189
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.55 E-value=1.4e-12 Score=112.44 Aligned_cols=222 Identities=11% Similarity=0.127 Sum_probs=152.5
Q ss_pred CCCCCeEEEEEcCCCC-EEEEEcCCc-EEEEeCCCCc---------EEEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCC
Q 019349 5 SSSYPVFFVSFNQDNS-GFALSTKDG-FKIFDSSTGR---------LCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLS 73 (342)
Q Consensus 5 ~~~~~V~~l~fs~d~~-~la~g~~~g-~~v~d~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 73 (342)
.|.++|..++|+|-+. .+|+|++|. +.||.+...- .....|...+..+.+.+....+++.++ .
T Consensus 79 GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag------~ 152 (472)
T KOG0303|consen 79 GHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAG------S 152 (472)
T ss_pred CccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhcc------C
Confidence 6788999999999665 478899987 6999875431 223445577888888877655555554 3
Q ss_pred CCeEEEEECCCCcEEEEEecCCceEEEEEcCCeEEEEE---CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEE
Q 019349 74 PRRLCLFNTTTGTALRELNFLTSILAVRLNKKRLVIVL---REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFL 150 (342)
Q Consensus 74 d~~i~iwd~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 150 (342)
|++|.+||+.+|+.+.++.++.-|.++.|+.++-.+++ |.+|+|||.++++.+.+-..|......-++-. .++. +
T Consensus 153 Dn~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl-~~g~-i 230 (472)
T KOG0303|consen 153 DNTVSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFL-ASGK-I 230 (472)
T ss_pred CceEEEEeccCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEe-ccCc-e
Confidence 99999999999999999999999999999988766655 88999999999998887755554433333322 2344 5
Q ss_pred EEeCC--CCccEEEEEEccCCce---eEEEecccCCeeEEEECCCCCEEEEEeC-CCcEEEEEEcCCCee-EEEeccCcC
Q 019349 151 AVPAS--TTKGSVLVYNVMELHS---HCEIDAHQAPLAAIVLSSNGMYIATASE-QGTIIRVFLVSEATK-SYSFRRGTY 223 (342)
Q Consensus 151 ~~~~~--~~~g~i~iwd~~~~~~---~~~~~~h~~~v~~i~~s~dg~~lat~s~-dg~~irlwd~~~~~~-~~~~~~~~~ 223 (342)
++.|. ..+.++-+||..+.+. +..+.. .+.|.-=-|.+|.+.+.-++. |+. ||.|.+.+... ++-+..-..
T Consensus 231 ~tTGfsr~seRq~aLwdp~nl~eP~~~~elDt-SnGvl~PFyD~dt~ivYl~GKGD~~-IRYyEit~d~P~~hyln~f~S 308 (472)
T KOG0303|consen 231 FTTGFSRMSERQIALWDPNNLEEPIALQELDT-SNGVLLPFYDPDTSIVYLCGKGDSS-IRYFEITNEPPFVHYLNTFSS 308 (472)
T ss_pred eeeccccccccceeccCcccccCcceeEEecc-CCceEEeeecCCCCEEEEEecCCcc-eEEEEecCCCceeEEeccccc
Confidence 55552 2467899999766543 233332 344555557888888877775 554 79999976652 222211111
Q ss_pred ceeEEEEEEecCC
Q 019349 224 PSTIFSLSFGQSM 236 (342)
Q Consensus 224 ~~~v~~l~fs~d~ 236 (342)
..+-..|.|-|..
T Consensus 309 ~epQRG~g~mPKR 321 (472)
T KOG0303|consen 309 KEPQRGMGFMPKR 321 (472)
T ss_pred CCccccccccccc
Confidence 2234567777654
No 190
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.54 E-value=1.7e-13 Score=122.94 Aligned_cols=242 Identities=12% Similarity=0.108 Sum_probs=161.8
Q ss_pred CCCCCCCeEEEEEcCCCCEEEEEcCCcE-EEEeCCCC--------cEE--EEEeeCCEEEEEEcCCCCeEEEEcCCCCCC
Q 019349 3 NQSSSYPVFFVSFNQDNSGFALSTKDGF-KIFDSSTG--------RLC--YERAVGAFSIVEMLYSSSLLAIVGAGEQPS 71 (342)
Q Consensus 3 ~~~~~~~V~~l~fs~d~~~la~g~~~g~-~v~d~~~~--------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 71 (342)
+.++.+-|+.++|.|-...|++++.+++ ++|+++.. +.+ +..|.+++.++.+..........|
T Consensus 290 l~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg------ 363 (577)
T KOG0642|consen 290 LRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGG------ 363 (577)
T ss_pred eecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeec------
Confidence 4567788999999999999999999996 99999322 223 334557777777766655554444
Q ss_pred CCCCeEEEEECCCCc---------EE-EEE-ecCCceEEEEEcC--CeEEEEE-CCeEEEEECCCCceeeEEeCCCCCce
Q 019349 72 LSPRRLCLFNTTTGT---------AL-REL-NFLTSILAVRLNK--KRLVIVL-REKTYIYDANTLAILDTIDTVPNLKG 137 (342)
Q Consensus 72 ~~d~~i~iwd~~~~~---------~~-~~~-~~~~~v~~i~~~~--~~~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~ 137 (342)
.|++|+.|++-... .+ ..+ .+...|..++++. ++++.++ |++++.|+...... .++........
T Consensus 364 -~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~ 441 (577)
T KOG0642|consen 364 -IDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGY 441 (577)
T ss_pred -cCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCC
Confidence 49999999654211 11 112 2345777888864 5666665 99999999876544 23322222222
Q ss_pred EEEEeeCCCccEEEEeCCCCccEEEEEEccCCceeEEEec-------ccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcC
Q 019349 138 LCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDA-------HQAPLAAIVLSSNGMYIATASEQGTIIRVFLVS 210 (342)
Q Consensus 138 ~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~-------h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~ 210 (342)
-..+........+.+++. ..+.-.++++.....+..+.. -...++-+...|.+....++-+|+. ||++|..
T Consensus 442 Plsvd~~ss~~a~~~~s~-~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~-Ir~~dn~ 519 (577)
T KOG0642|consen 442 PLSVDRTSSRPAHSLASF-RFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRS-IRFFDNK 519 (577)
T ss_pred cceEeeccchhHhhhhhc-ccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCc-eeccccc
Confidence 223333222212222221 234444455555544444432 1245788889999999999999987 6999999
Q ss_pred CCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCC
Q 019349 211 EATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFA 259 (342)
Q Consensus 211 ~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~ 259 (342)
+++.+.....+ ...++++++.|++. +|++++.|+.+++|.++..
T Consensus 520 ~~~~l~s~~a~--~~svtslai~~ng~---~l~s~s~d~sv~l~kld~k 563 (577)
T KOG0642|consen 520 TGKILHSMVAH--KDSVTSLAIDPNGP---YLMSGSHDGSVRLWKLDVK 563 (577)
T ss_pred ccccchheeec--cceecceeecCCCc---eEEeecCCceeehhhccch
Confidence 99998887643 55699999999999 9999999999999998654
No 191
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.54 E-value=2.7e-13 Score=117.77 Aligned_cols=190 Identities=19% Similarity=0.266 Sum_probs=139.5
Q ss_pred EEEEEcCCCCEEEEEcCCc-EEEEeCCCCcEEE--EEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcE
Q 019349 11 FFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCY--ERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTA 87 (342)
Q Consensus 11 ~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~ 87 (342)
.+++|++||+.|++|..|| +|||+..+...+. ..+.+.+..+.+.+++..++.+++ | ..+||+..+|-+
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~-------d-~~~VW~~~~g~~ 219 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGA-------D-SARVWSVNTGAA 219 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecC-------C-ceEEEEeccCch
Confidence 6899999999999999998 5999976654332 234577888888889999999987 5 899999999977
Q ss_pred EEEEec-C--CceEEEEEcCCe----EEEEE----CCeEEEEECCCC---ceeeEEeCCCCCceEEEEeeCCCccEEEEe
Q 019349 88 LRELNF-L--TSILAVRLNKKR----LVIVL----REKTYIYDANTL---AILDTIDTVPNLKGLCAFSPSLNACFLAVP 153 (342)
Q Consensus 88 ~~~~~~-~--~~v~~i~~~~~~----~~~~~----d~~i~i~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 153 (342)
+..... . .....+.|..+. +.++. .+.|+.|++... ..++..+.-.....+.+++-++++.++|.+
T Consensus 220 ~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlG 299 (398)
T KOG0771|consen 220 LARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALG 299 (398)
T ss_pred hhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEe
Confidence 766552 1 134555565443 33333 346666666321 111111111223468889999999999998
Q ss_pred CCCCccEEEEEEccCCceeEEEe-cccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCC
Q 019349 154 ASTTKGSVLVYNVMELHSHCEID-AHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSE 211 (342)
Q Consensus 154 ~~~~~g~i~iwd~~~~~~~~~~~-~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~ 211 (342)
+ .+|.|.|++..+.+.++..+ +|...|+.+.|+||.+++++-|.|.+ ++|..+.-
T Consensus 300 T--~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~-~~v~~l~v 355 (398)
T KOG0771|consen 300 T--MDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNE-AAVTKLAV 355 (398)
T ss_pred c--cCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCc-eeEEEEee
Confidence 8 68999999999998887664 79999999999999999999888876 46776643
No 192
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.54 E-value=1.9e-12 Score=120.92 Aligned_cols=237 Identities=12% Similarity=0.091 Sum_probs=153.2
Q ss_pred CCCCeEEEEEcCCC-CEEEEEcCCc-EEEEeCCCCcEE------EEEee--CCEEEEEEcCCCCe--EEEEcCCCCCCCC
Q 019349 6 SSYPVFFVSFNQDN-SGFALSTKDG-FKIFDSSTGRLC------YERAV--GAFSIVEMLYSSSL--LAIVGAGEQPSLS 73 (342)
Q Consensus 6 ~~~~V~~l~fs~d~-~~la~g~~~g-~~v~d~~~~~~~------~~~~~--~~~~~~~~~~~~~~--~~~~~~g~~~~~~ 73 (342)
...+|.|+.|+|.. .+||+|+.+| +-+||+..+... ...+. ..+..+.+..+... ++.++ .
T Consensus 241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~s-------s 313 (555)
T KOG1587|consen 241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLS-------S 313 (555)
T ss_pred cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEe-------c
Confidence 35689999999965 5677788888 799998776431 11122 33444444433322 33333 4
Q ss_pred CCeEEEEECCCCcEEE------EEe-------cCCceEEEEE---cCCeEEEEE-CCeEEEEECCCCce--------eeE
Q 019349 74 PRRLCLFNTTTGTALR------ELN-------FLTSILAVRL---NKKRLVIVL-REKTYIYDANTLAI--------LDT 128 (342)
Q Consensus 74 d~~i~iwd~~~~~~~~------~~~-------~~~~v~~i~~---~~~~~~~~~-d~~i~i~d~~~~~~--------~~~ 128 (342)
|++|..|+++.-.... ... ....++.++| .++.+++.+ +|.|+--+-...+. +..
T Consensus 314 DG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~ 393 (555)
T KOG1587|consen 314 DGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHST 393 (555)
T ss_pred CCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccccccccccc
Confidence 8999999976432211 111 1125677777 456777777 56776633322211 222
Q ss_pred EeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEcc-CCceeEEEecccCCeeEEEECCCC-CEEEEEeCCCcEEEE
Q 019349 129 IDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVM-ELHSHCEIDAHQAPLAAIVLSSNG-MYIATASEQGTIIRV 206 (342)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~-~~~~~~~~~~h~~~v~~i~~s~dg-~~lat~s~dg~~irl 206 (342)
+..+. ..+.++..+|=...++.++ .|-+|+||... ...++..+..+...|++++|||-- ..+|++..||. +.+
T Consensus 394 ~~~h~--g~v~~v~~nPF~~k~fls~--gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~-l~i 468 (555)
T KOG1587|consen 394 FITHI--GPVYAVSRNPFYPKNFLSV--GDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGN-LDI 468 (555)
T ss_pred ccccC--cceEeeecCCCccceeeee--ccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCc-eeh
Confidence 23333 3455666665444444444 27899999988 677888888888889999999965 57888888998 589
Q ss_pred EEcCCCee--EEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCC
Q 019349 207 FLVSEATK--SYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFA 259 (342)
Q Consensus 207 wd~~~~~~--~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~ 259 (342)
||+..... +.....+ ....+.+.|+++++ +|++|...|++++|++...
T Consensus 469 WDLl~~~~~Pv~s~~~~--~~~l~~~~~s~~g~---~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 469 WDLLQDDEEPVLSQKVC--SPALTRVRWSPNGK---LLAVGDANGTTHILKLSES 518 (555)
T ss_pred hhhhccccCCccccccc--ccccceeecCCCCc---EEEEecCCCcEEEEEcCch
Confidence 99975433 2222222 23467788999999 9999999999999999643
No 193
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.53 E-value=1.6e-11 Score=99.67 Aligned_cols=229 Identities=13% Similarity=0.167 Sum_probs=152.7
Q ss_pred CCCCCCCeEEEEEcCCCCEEEEEcCCcEEEEeCCCCc------EEEEE---------eeCCEEEEEEcCCCCeEEEEcCC
Q 019349 3 NQSSSYPVFFVSFNQDNSGFALSTKDGFKIFDSSTGR------LCYER---------AVGAFSIVEMLYSSSLLAIVGAG 67 (342)
Q Consensus 3 ~~~~~~~V~~l~fs~d~~~la~g~~~g~~v~d~~~~~------~~~~~---------~~~~~~~~~~~~~~~~~~~~~~g 67 (342)
.+.++.+|++++|. ..+|.+|.+.-++=|...... .+.+. +...+..+...+..+-+++++|
T Consensus 58 eqahdgpiy~~~f~--d~~Lls~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgG- 134 (325)
T KOG0649|consen 58 EQAHDGPIYYLAFH--DDFLLSGGDGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGG- 134 (325)
T ss_pred ccccCCCeeeeeee--hhheeeccCceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecC-
Confidence 46789999999999 345667776446777543221 11111 1234555566667778888876
Q ss_pred CCCCCCCCeEEEEECCCCcEEEEEecCC-ceEEEEE-cCCeEEEEE--CCeEEEEECCCCceeeEEeCCCCCc-------
Q 019349 68 EQPSLSPRRLCLFNTTTGTALRELNFLT-SILAVRL-NKKRLVIVL--REKTYIYDANTLAILDTIDTVPNLK------- 136 (342)
Q Consensus 68 ~~~~~~d~~i~iwd~~~~~~~~~~~~~~-~v~~i~~-~~~~~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~------- 136 (342)
|+.+..||+++|+...+++.+. .|.++.. +.+..++.. ||++++||+++.+.+..+....++.
T Consensus 135 ------D~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g 208 (325)
T KOG0649|consen 135 ------DGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWG 208 (325)
T ss_pred ------CeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccC
Confidence 8999999999999999887554 7777776 444444433 9999999999999988885544432
Q ss_pred -eEEEEeeCCCccEEEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeE
Q 019349 137 -GLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKS 215 (342)
Q Consensus 137 -~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~ 215 (342)
-+-|++-+ ...+++++ ...+.+|.+++.++...|+- ..++..+.|-. ..++++++-. .+.-|.+ +|...
T Consensus 209 ~wigala~~--edWlvCGg---Gp~lslwhLrsse~t~vfpi-pa~v~~v~F~~--d~vl~~G~g~-~v~~~~l-~Gvl~ 278 (325)
T KOG0649|consen 209 KWIGALAVN--EDWLVCGG---GPKLSLWHLRSSESTCVFPI-PARVHLVDFVD--DCVLIGGEGN-HVQSYTL-NGVLQ 278 (325)
T ss_pred ceeEEEecc--CceEEecC---CCceeEEeccCCCceEEEec-ccceeEeeeec--ceEEEecccc-ceeeeee-ccEEE
Confidence 13455544 44888776 36799999999988777653 34577788854 4677777544 4678887 46554
Q ss_pred EEeccCcCceeEEEEEEecC-CCcccEEEEEeCCCcEEEEe
Q 019349 216 YSFRRGTYPSTIFSLSFGQS-MQFQDILVATSSSGSLHVFS 255 (342)
Q Consensus 216 ~~~~~~~~~~~v~~l~fs~d-~~~~~~l~~~s~dg~i~vwd 255 (342)
...+.+.+ ..++..++.. -+ +|-.++..+.++|+.
T Consensus 279 a~ip~~s~--~c~s~s~~~~p~k---~~s~ag~s~~~~i~~ 314 (325)
T KOG0649|consen 279 ANIPVEST--ACYSASWQTSPIK---FISIAGFSNKLHILK 314 (325)
T ss_pred EeccCCcc--ceeeecccCCceE---EEEecccceeeeeee
Confidence 44433322 2455555422 24 677778888888874
No 194
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.51 E-value=1.6e-11 Score=119.24 Aligned_cols=245 Identities=11% Similarity=0.112 Sum_probs=165.2
Q ss_pred CCCCeEEEEEcCCC-CEEEEEcCCcE-EEEeCCCC---------cEEEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCC
Q 019349 6 SSYPVFFVSFNQDN-SGFALSTKDGF-KIFDSSTG---------RLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSP 74 (342)
Q Consensus 6 ~~~~V~~l~fs~d~-~~la~g~~~g~-~v~d~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d 74 (342)
+...|..++.+++. .++++|++||. ++||+... ++.+......+..+.+...++.+|+.+ .|
T Consensus 1047 hs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t-------~D 1119 (1431)
T KOG1240|consen 1047 HSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVST-------KD 1119 (1431)
T ss_pred ccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEc-------CC
Confidence 44566678777766 89999999995 99997432 334555567888899999999998885 49
Q ss_pred CeEEEEECCCC--c-----EEEEE--ecCCceEEEE-E---cCC-eEEEEE-CCeEEEEECCCCceeeEEeCCCCCceEE
Q 019349 75 RRLCLFNTTTG--T-----ALREL--NFLTSILAVR-L---NKK-RLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLC 139 (342)
Q Consensus 75 ~~i~iwd~~~~--~-----~~~~~--~~~~~v~~i~-~---~~~-~~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~ 139 (342)
|.|++.++... + +.... ...+.+.++. + ... .++.++ -+.|..||++.......++.......+.
T Consensus 1120 G~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vT 1199 (1431)
T KOG1240|consen 1120 GSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVT 1199 (1431)
T ss_pred CeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCcccccee
Confidence 99999998652 1 11111 1223444432 1 122 334444 4689999998776666665555555677
Q ss_pred EEeeCCCccEEEEeCCCCccEEEEEEccCCceeEEEe-cccCCeeEEEECC---CCCEEEEEeC-CCcEEEEEEcCCCee
Q 019349 140 AFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEID-AHQAPLAAIVLSS---NGMYIATASE-QGTIIRVFLVSEATK 214 (342)
Q Consensus 140 ~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~-~h~~~v~~i~~s~---dg~~lat~s~-dg~~irlwd~~~~~~ 214 (342)
.++.+|.+++++.+. ..|.+.+||++=+.++..+. .|..+|+.+...| .....++++. -.+-+-+|++.+|..
T Consensus 1200 Si~idp~~~WlviGt--s~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~ 1277 (1431)
T KOG1240|consen 1200 SIVIDPWCNWLVIGT--SRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLR 1277 (1431)
T ss_pred EEEecCCceEEEEec--CCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcc
Confidence 888888888998877 57999999999888887765 3457788887766 3356666655 333468999999876
Q ss_pred EEEeccCc-----------C----ce--eEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCC
Q 019349 215 SYSFRRGT-----------Y----PS--TIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQ 262 (342)
Q Consensus 215 ~~~~~~~~-----------~----~~--~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~ 262 (342)
-..+.... . +. .....++..-+. ++.+|+.|..|+.||...+...
T Consensus 1278 ~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~---~~ltggsd~kIR~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1278 QTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNG---FLLTGGSDMKIRKWDPTRPEIS 1339 (1431)
T ss_pred eEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCc---eeeecCCccceeeccCCCcccc
Confidence 55553320 0 11 122233433344 8999999999999998876543
No 195
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.51 E-value=2.3e-12 Score=119.92 Aligned_cols=212 Identities=12% Similarity=0.077 Sum_probs=136.1
Q ss_pred CCCCCeEEEEEcCCCCEEEEEcCC----cEEEEeCCCCcEE-EEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCe--E
Q 019349 5 SSSYPVFFVSFNQDNSGFALSTKD----GFKIFDSSTGRLC-YERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRR--L 77 (342)
Q Consensus 5 ~~~~~V~~l~fs~d~~~la~g~~~----g~~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~--i 77 (342)
.+...+.+.+|||||+.|+..+.+ .+.+||+.+++.. .....+......+.++++.++++.. .++. |
T Consensus 201 ~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~La~~~~------~~g~~~I 274 (429)
T PRK01742 201 RSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSRLAFASS------KDGVLNI 274 (429)
T ss_pred cCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECCCCCEEEEEEe------cCCcEEE
Confidence 456679999999999999876532 2789999887532 2212233345678888888887653 2444 5
Q ss_pred EEEECCCCcEEEEEecCCceEEEEEcCCe--EEEEE--CCeEEEEECCCC-ceeeEEeCCCCCceEEEEeeCCCccEEEE
Q 019349 78 CLFNTTTGTALRELNFLTSILAVRLNKKR--LVIVL--REKTYIYDANTL-AILDTIDTVPNLKGLCAFSPSLNACFLAV 152 (342)
Q Consensus 78 ~iwd~~~~~~~~~~~~~~~v~~i~~~~~~--~~~~~--d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 152 (342)
.+||+.+++..........+....|+++. ++.++ ++...||++... .....+ .+.. ....++|++..+++
T Consensus 275 y~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~----~~~~~SpDG~~ia~ 349 (429)
T PRK01742 275 YVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG----YSAQISADGKTLVM 349 (429)
T ss_pred EEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC----CCccCCCCCCEEEE
Confidence 55677766644333334467788898875 34444 456677765432 122222 2211 23457788889988
Q ss_pred eCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEc--CCCeeEEEeccCcCceeEEEE
Q 019349 153 PASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLV--SEATKSYSFRRGTYPSTIFSL 230 (342)
Q Consensus 153 ~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~--~~~~~~~~~~~~~~~~~v~~l 230 (342)
.+. ++ +.+||+.+++.......+ ....+.|+|||++|+.++.+|.. ++|++ .+|+.+.++.. +.+.+...
T Consensus 350 ~~~--~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~-~~l~~~~~~G~~~~~l~~--~~g~~~~p 421 (429)
T PRK01742 350 ING--DN-VVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLG-KVLQLVSADGRFKARLPG--SDGQVKFP 421 (429)
T ss_pred EcC--CC-EEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCc-eEEEEEECCCCceEEccC--CCCCCCCc
Confidence 763 44 666999888654322222 23567899999999999999874 67775 35777777743 24557788
Q ss_pred EEecC
Q 019349 231 SFGQS 235 (342)
Q Consensus 231 ~fs~d 235 (342)
+|||-
T Consensus 422 ~wsp~ 426 (429)
T PRK01742 422 AWSPY 426 (429)
T ss_pred ccCCC
Confidence 99874
No 196
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.51 E-value=7.9e-13 Score=111.30 Aligned_cols=188 Identities=19% Similarity=0.221 Sum_probs=133.0
Q ss_pred eEEEEEcCCCCEEEEEcCCcEEEEeC-CCCcEE------EEEeeC---CEEEEEEcCCCC-eEEEEcCCCCCCCCCCeEE
Q 019349 10 VFFVSFNQDNSGFALSTKDGFKIFDS-STGRLC------YERAVG---AFSIVEMLYSSS-LLAIVGAGEQPSLSPRRLC 78 (342)
Q Consensus 10 V~~l~fs~d~~~la~g~~~g~~v~d~-~~~~~~------~~~~~~---~~~~~~~~~~~~-~~~~~~~g~~~~~~d~~i~ 78 (342)
-.|++|+|||.+|.+|....+|+||+ .+|+.. .....+ -+..+++.+... .+++.+- -+.+-
T Consensus 161 AhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY-------~q~~g 233 (406)
T KOG2919|consen 161 AHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSY-------GQRVG 233 (406)
T ss_pred heeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecc-------cceee
Confidence 45899999999999999999999998 566432 111122 233344444333 3444333 46777
Q ss_pred EEECCCCcEEEEE-ecCCceEEEEEcCCe--EEEEE--CCeEEEEECCC-CceeeEEeCCCC-CceEEEEeeCCCccEEE
Q 019349 79 LFNTTTGTALREL-NFLTSILAVRLNKKR--LVIVL--REKTYIYDANT-LAILDTIDTVPN-LKGLCAFSPSLNACFLA 151 (342)
Q Consensus 79 iwd~~~~~~~~~~-~~~~~v~~i~~~~~~--~~~~~--d~~i~i~d~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~ 151 (342)
|+....+.++..+ .+.+.|+.++|.+++ +++.. +.+|..||++. ..++..+..+.. ...-+-|...|++.+||
T Consensus 234 iy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~La 313 (406)
T KOG2919|consen 234 IYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILA 313 (406)
T ss_pred eEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceee
Confidence 7776667766655 455689999997764 44444 78999999975 345555544333 23345567778888999
Q ss_pred EeCCCCccEEEEEEccC-CceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcC
Q 019349 152 VPASTTKGSVLVYNVME-LHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVS 210 (342)
Q Consensus 152 ~~~~~~~g~i~iwd~~~-~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~ 210 (342)
+++ .+|.|++||++. +..+..+..|...++.++++|--..+||+| |. |+|-..
T Consensus 314 sG~--tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatss--Gq--r~f~~~ 367 (406)
T KOG2919|consen 314 SGD--TDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSS--GQ--RIFKYP 367 (406)
T ss_pred ccC--CCccEEEEecCCCCCcccccccccccccceecCcccceeeecc--Cc--eeecCC
Confidence 877 799999999998 667888889999999999999988999988 43 455443
No 197
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.51 E-value=1.7e-12 Score=115.97 Aligned_cols=183 Identities=14% Similarity=0.174 Sum_probs=126.2
Q ss_pred CCCeEEEEECCCCcEEEEEe-----cCCceEEEEEcC--CeEEEEE--CCeEEEEECCC--------------CceeeEE
Q 019349 73 SPRRLCLFNTTTGTALRELN-----FLTSILAVRLNK--KRLVIVL--REKTYIYDANT--------------LAILDTI 129 (342)
Q Consensus 73 ~d~~i~iwd~~~~~~~~~~~-----~~~~v~~i~~~~--~~~~~~~--d~~i~i~d~~~--------------~~~~~~~ 129 (342)
..+.+.+.|....+...-+. ....|+++.|-+ +.++++. ++.+++||... +......
T Consensus 193 ~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~ 272 (636)
T KOG2394|consen 193 TTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAIL 272 (636)
T ss_pred ccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEe
Confidence 35677777765422111111 135788888843 3444444 88999997631 1111111
Q ss_pred ----eCCCCC--------ceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEE
Q 019349 130 ----DTVPNL--------KGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATA 197 (342)
Q Consensus 130 ----~~~~~~--------~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~ 197 (342)
....+| ..+..++++||+++||+.+ .||.++|+|..+.+.+..++..-+...|++|||||++|+||
T Consensus 273 t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VS--qDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtG 350 (636)
T KOG2394|consen 273 TSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVS--QDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTG 350 (636)
T ss_pred eeeccccCCccceeEeccccccceeEcCCCceEEEEe--cCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEec
Confidence 011122 2355677888999999999 79999999999988877777777889999999999999999
Q ss_pred eCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEec-------------------------------CCC---------
Q 019349 198 SEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQ-------------------------------SMQ--------- 237 (342)
Q Consensus 198 s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~-------------------------------d~~--------- 237 (342)
++|. ++.||.+..++.+..= +.|..-|..++|.| ++.
T Consensus 351 GEDD-LVtVwSf~erRVVARG--qGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~ 427 (636)
T KOG2394|consen 351 GEDD-LVTVWSFEERRVVARG--QGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSF 427 (636)
T ss_pred CCcc-eEEEEEeccceEEEec--cccccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCccccc
Confidence 9997 6789999998887753 33466688888872 000
Q ss_pred -----cccEEEEEeCCCcEEEEecCCCC
Q 019349 238 -----FQDILVATSSSGSLHVFSPGFAI 260 (342)
Q Consensus 238 -----~~~~l~~~s~dg~i~vwd~~~~~ 260 (342)
....|.+.+.|-.+.+||+....
T Consensus 428 ~~~~~v~YRfGSVGqDTqlcLWDlteD~ 455 (636)
T KOG2394|consen 428 NRINSVTYRFGSVGQDTQLCLWDLTEDV 455 (636)
T ss_pred ccccceEEEeecccccceEEEEecchhh
Confidence 00267888899999999986543
No 198
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.49 E-value=6.6e-12 Score=106.10 Aligned_cols=185 Identities=12% Similarity=0.073 Sum_probs=121.5
Q ss_pred EEEEcCCCCEEEEEcCCcEEEEeCCCCcEEEEE-eeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEEEE
Q 019349 12 FVSFNQDNSGFALSTKDGFKIFDSSTGRLCYER-AVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRE 90 (342)
Q Consensus 12 ~l~fs~d~~~la~g~~~g~~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~ 90 (342)
-.+|||+|+++|+.+.--+.|-|.++.++..-. -...+..+.+..++-+++ ++. +.+..|.+|++.+.+.-..
T Consensus 13 ~c~fSp~g~yiAs~~~yrlviRd~~tlq~~qlf~cldki~yieW~ads~~il-C~~-----yk~~~vqvwsl~Qpew~ck 86 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRYRLVIRDSETLQLHQLFLCLDKIVYIEWKADSCHIL-CVA-----YKDPKVQVWSLVQPEWYCK 86 (447)
T ss_pred ceeECCCCCeeeeeeeeEEEEeccchhhHHHHHHHHHHhhheeeeccceeee-eee-----eccceEEEEEeecceeEEE
Confidence 468999999999998877777787776432100 013455566665554443 333 3678999999999988888
Q ss_pred EecC-CceEEEEEcCCeE--EEEE--CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCC---------
Q 019349 91 LNFL-TSILAVRLNKKRL--VIVL--REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPAST--------- 156 (342)
Q Consensus 91 ~~~~-~~v~~i~~~~~~~--~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--------- 156 (342)
++.. ..+..++|+|++. +..+ +-+|.+|.+.+.+.... +-+. .++-.+++++++++.|...+.
T Consensus 87 Ideg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~-~~pK--~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~ 163 (447)
T KOG4497|consen 87 IDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLL-PHPK--TNVKGYAFHPDGQFCAILSRRDCKDYVQIS 163 (447)
T ss_pred eccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEe-cccc--cCceeEEECCCCceeeeeecccHHHHHHHH
Confidence 8764 4889999999873 2233 66999999988654422 1111 233455666777776665421
Q ss_pred -------------------------CccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEE
Q 019349 157 -------------------------TKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVF 207 (342)
Q Consensus 157 -------------------------~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlw 207 (342)
.+..+.+||---...+... .-.-.+..++|+|.+++||.|+.|+. +|+-
T Consensus 164 ~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aY-e~~lG~k~v~wsP~~qflavGsyD~~-lrvl 237 (447)
T KOG4497|consen 164 SCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAY-ERGLGLKFVEWSPCNQFLAVGSYDQM-LRVL 237 (447)
T ss_pred hhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeee-eeccceeEEEeccccceEEeeccchh-hhhh
Confidence 3455677774322222111 12346889999999999999999986 4654
No 199
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.49 E-value=4.9e-12 Score=104.32 Aligned_cols=111 Identities=17% Similarity=0.208 Sum_probs=87.5
Q ss_pred eEEEEeeCCCccEEEEe-CCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCC---CcEEEEEEcCCC
Q 019349 137 GLCAFSPSLNACFLAVP-ASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQ---GTIIRVFLVSEA 212 (342)
Q Consensus 137 ~~~~~~~~~~~~~l~~~-~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~d---g~~irlwd~~~~ 212 (342)
.+..++++|++..+|+. |. .++.|.+||++ ++.+..+. ..+++.|.|||+|++||+|+.+ |. +++||+++.
T Consensus 61 ~I~~~~WsP~g~~favi~g~-~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~-l~~wd~~~~ 135 (194)
T PF08662_consen 61 PIHDVAWSPNGNEFAVIYGS-MPAKVTLYDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGD-LEFWDVRKK 135 (194)
T ss_pred ceEEEEECcCCCEEEEEEcc-CCcccEEEcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcE-EEEEECCCC
Confidence 37888888888776544 43 56799999996 66666664 5678999999999999999754 44 589999999
Q ss_pred eeEEEeccCcCceeEEEEEEecCCCcccEEEEEeC------CCcEEEEecCCC
Q 019349 213 TKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSS------SGSLHVFSPGFA 259 (342)
Q Consensus 213 ~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~------dg~i~vwd~~~~ 259 (342)
+.+.++.. . .+..++|+|||+ +|++++. |+.++||+....
T Consensus 136 ~~i~~~~~---~-~~t~~~WsPdGr---~~~ta~t~~r~~~dng~~Iw~~~G~ 181 (194)
T PF08662_consen 136 KKISTFEH---S-DATDVEWSPDGR---YLATATTSPRLRVDNGFKIWSFQGR 181 (194)
T ss_pred EEeecccc---C-cEEEEEEcCCCC---EEEEEEeccceeccccEEEEEecCe
Confidence 88877642 2 378899999999 8888864 788999998643
No 200
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.49 E-value=6.1e-12 Score=108.89 Aligned_cols=245 Identities=13% Similarity=0.129 Sum_probs=158.1
Q ss_pred CCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCC--------C-----C---cE--EEEEeeCCEEEEEEcCCCCeEEE
Q 019349 3 NQSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSS--------T-----G---RL--CYERAVGAFSIVEMLYSSSLLAI 63 (342)
Q Consensus 3 ~~~~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~--------~-----~---~~--~~~~~~~~~~~~~~~~~~~~~~~ 63 (342)
++.|...|+++.|+|+|..||+|+++| +.+|-.. + . .. ....+...+.-++|.++++++..
T Consensus 61 Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s 140 (434)
T KOG1009|consen 61 LSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVS 140 (434)
T ss_pred ccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeee
Confidence 567889999999999999999999998 4889644 2 1 00 11112244555566666777766
Q ss_pred EcCCCCCCCCCCeEEEEECCCCcEEEEEe-cCCceEEEEEcCCeEEEEE---CCeEEEEECCCCceeeEEe-----C---
Q 019349 64 VGAGEQPSLSPRRLCLFNTTTGTALRELN-FLTSILAVRLNKKRLVIVL---REKTYIYDANTLAILDTID-----T--- 131 (342)
Q Consensus 64 ~~~g~~~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~i~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~-----~--- 131 (342)
.+. |+.+++||+..|+.+.... +...+..++|.+...++++ |...+.+.+...+.++... .
T Consensus 141 ~s~-------dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~ 213 (434)
T KOG1009|consen 141 GSV-------DNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAF 213 (434)
T ss_pred eec-------cceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeeccc
Confidence 655 8999999999999887765 4458899999887666554 5556666655433322221 0
Q ss_pred CCC-------------CceEEEEeeCCCccEEEEeCCC--Cc-----cEEEEEEccCC-ceeEEEecccCCeeEEEEC--
Q 019349 132 VPN-------------LKGLCAFSPSLNACFLAVPAST--TK-----GSVLVYNVMEL-HSHCEIDAHQAPLAAIVLS-- 188 (342)
Q Consensus 132 ~~~-------------~~~~~~~~~~~~~~~l~~~~~~--~~-----g~i~iwd~~~~-~~~~~~~~h~~~v~~i~~s-- 188 (342)
... +.-..-+++.|++.+++++..- .. ++..+++-... ++...+++...+...+.|+
T Consensus 214 ~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pV 293 (434)
T KOG1009|consen 214 NEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPV 293 (434)
T ss_pred CCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeee
Confidence 000 1111234556778787765410 11 22233433211 2344455555555555553
Q ss_pred ----------------CCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEE
Q 019349 189 ----------------SNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLH 252 (342)
Q Consensus 189 ----------------~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~ 252 (342)
|-+-.+|.|+.+. + .+||.++-+.+.... ..+-..|+.++|++||. .|+..|.||...
T Consensus 294 y~elrp~~~~~~~~~lpyrlvfaiAt~~s-v-yvydtq~~~P~~~v~-nihy~~iTDiaws~dg~---~l~vSS~DGyCS 367 (434)
T KOG1009|consen 294 YYELRPLSSEKFLFVLPYRLVFAIATKNS-V-YVYDTQTLEPLAVVD-NIHYSAITDIAWSDDGS---VLLVSSTDGFCS 367 (434)
T ss_pred EEEeccccccccccccccceEEEEeecce-E-EEeccccccceEEEe-eeeeeeecceeecCCCc---EEEEeccCCceE
Confidence 3344578888774 4 699999988877664 34566799999999999 999999999988
Q ss_pred EEecCCCC
Q 019349 253 VFSPGFAI 260 (342)
Q Consensus 253 vwd~~~~~ 260 (342)
+--++..+
T Consensus 368 ~vtfe~~e 375 (434)
T KOG1009|consen 368 LVTFEPWE 375 (434)
T ss_pred EEEEcchh
Confidence 87776544
No 201
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.49 E-value=6.3e-12 Score=116.96 Aligned_cols=213 Identities=11% Similarity=0.045 Sum_probs=132.6
Q ss_pred CCeEEEEECCCCcEEEEEecCCceEEEEEcCCeEEE--EE-C---CeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCc
Q 019349 74 PRRLCLFNTTTGTALRELNFLTSILAVRLNKKRLVI--VL-R---EKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNA 147 (342)
Q Consensus 74 d~~i~iwd~~~~~~~~~~~~~~~v~~i~~~~~~~~~--~~-d---~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (342)
+..|.+||........-......+....|+|+...+ ++ + ..|++||+.+++... +..... .....+++||+
T Consensus 183 ~~~i~i~d~dg~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~-l~~~~g--~~~~~~wSPDG 259 (429)
T PRK01742 183 PYEVRVADYDGFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV-VASFRG--HNGAPAFSPDG 259 (429)
T ss_pred eEEEEEECCCCCCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE-EecCCC--ccCceeECCCC
Confidence 578999998655432222334578999999886433 33 2 379999998875322 211111 12245777888
Q ss_pred cEEEEeCCCCccEEEEE--EccCCceeEEEecccCCeeEEEECCCCCEEEEEe-CCCcEEEEEEcCCC-eeEEEeccCcC
Q 019349 148 CFLAVPASTTKGSVLVY--NVMELHSHCEIDAHQAPLAAIVLSSNGMYIATAS-EQGTIIRVFLVSEA-TKSYSFRRGTY 223 (342)
Q Consensus 148 ~~l~~~~~~~~g~i~iw--d~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s-~dg~~irlwd~~~~-~~~~~~~~~~~ 223 (342)
..|+++.. .+|.+.|| |+.+++ ...+..|...+....|+|||+.|+..+ .+|. .+||++... .....+ .+
T Consensus 260 ~~La~~~~-~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~-~~I~~~~~~~~~~~~l-~~-- 333 (429)
T PRK01742 260 SRLAFASS-KDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGS-PQVYRMSASGGGASLV-GG-- 333 (429)
T ss_pred CEEEEEEe-cCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECCCCCEEEEEECCCCC-ceEEEEECCCCCeEEe-cC--
Confidence 88887653 46665555 665554 455666777788999999999888766 4566 478887532 222222 11
Q ss_pred ceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCcccc
Q 019349 224 PSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRA 303 (342)
Q Consensus 224 ~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (342)
.. .+.+|+||++ +|+.++.++ +.+||+.++..... .... ......|+|++ .
T Consensus 334 ~~--~~~~~SpDG~---~ia~~~~~~-i~~~Dl~~g~~~~l-------t~~~--~~~~~~~sPdG--------------~ 384 (429)
T PRK01742 334 RG--YSAQISADGK---TLVMINGDN-VVKQDLTSGSTEVL-------SSTF--LDESPSISPNG--------------I 384 (429)
T ss_pred CC--CCccCCCCCC---EEEEEcCCC-EEEEECCCCCeEEe-------cCCC--CCCCceECCCC--------------C
Confidence 11 4578999999 888887765 55699877643210 0000 00112355544 7
Q ss_pred EEEEEEeCCcEEEEEEecCCC
Q 019349 304 SVSVITYNGYFVEYIFSINNC 324 (342)
Q Consensus 304 ~l~~~~~dg~v~~~~~~~~~~ 324 (342)
.|+.++.+|...+|.+....+
T Consensus 385 ~i~~~s~~g~~~~l~~~~~~G 405 (429)
T PRK01742 385 MIIYSSTQGLGKVLQLVSADG 405 (429)
T ss_pred EEEEEEcCCCceEEEEEECCC
Confidence 899999999988887654333
No 202
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.47 E-value=2.4e-13 Score=119.29 Aligned_cols=193 Identities=11% Similarity=0.118 Sum_probs=153.4
Q ss_pred EEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEEEEEecCCceEEEEEcC--CeEEEEECCeEEEEECCCCceeeEE
Q 019349 52 VEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRLNK--KRLVIVLREKTYIYDANTLAILDTI 129 (342)
Q Consensus 52 ~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~i~~~~--~~~~~~~d~~i~i~d~~~~~~~~~~ 129 (342)
+....++..+++.+ ..+.|-.+|..+++...++.....|.++.|-. +.+++|..+.++|||- .|..++.+
T Consensus 135 ~~ytrnGrhlllgG-------rKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~-~GtElHCl 206 (545)
T KOG1272|consen 135 LDYTRNGRHLLLGG-------RKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQKKYVYVYDN-NGTELHCL 206 (545)
T ss_pred eeecCCccEEEecC-------CccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhhceEEEecC-CCcEEeeh
Confidence 34445556665544 37899999999999999999989999999843 4555566789999995 45556666
Q ss_pred eCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEc
Q 019349 130 DTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLV 209 (342)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~ 209 (342)
..+.. +..+.+-|.-.+|++++ ..|.++--|+.+|+.+..+..-.+++..|+-+|-...+-+|...|++ -+|..
T Consensus 207 k~~~~---v~rLeFLPyHfLL~~~~--~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtV-SlWSP 280 (545)
T KOG1272|consen 207 KRHIR---VARLEFLPYHFLLVAAS--EAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTV-SLWSP 280 (545)
T ss_pred hhcCc---hhhhcccchhheeeecc--cCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceE-EecCC
Confidence 54333 33444455555666666 68999999999999999888888899999999988999999999985 79999
Q ss_pred CCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCC
Q 019349 210 SEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQR 263 (342)
Q Consensus 210 ~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~ 263 (342)
...+.+..+.. +.++|.+|++.++|. |+|+++.|..++|||++...++.
T Consensus 281 ~skePLvKiLc--H~g~V~siAv~~~G~---YMaTtG~Dr~~kIWDlR~~~ql~ 329 (545)
T KOG1272|consen 281 NSKEPLVKILC--HRGPVSSIAVDRGGR---YMATTGLDRKVKIWDLRNFYQLH 329 (545)
T ss_pred CCcchHHHHHh--cCCCcceEEECCCCc---EEeecccccceeEeeeccccccc
Confidence 98888776653 467799999999999 99999999999999999877544
No 203
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.46 E-value=8.7e-12 Score=107.51 Aligned_cols=213 Identities=10% Similarity=0.122 Sum_probs=144.6
Q ss_pred CeEEEEEcCCCCEEEEEcCCc-EEEEeCCCC-----cEEEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCC--CeEEEE
Q 019349 9 PVFFVSFNQDNSGFALSTKDG-FKIFDSSTG-----RLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSP--RRLCLF 80 (342)
Q Consensus 9 ~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d--~~i~iw 80 (342)
+|..++.. ||.++ ++.++| +++|....+ +++.-....++..+.-......++..|| .. +.+++|
T Consensus 107 ~I~gl~~~-dg~Li-tc~~sG~l~~~~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GG------ke~~n~lkiw 178 (412)
T KOG3881|consen 107 SIKGLKLA-DGTLI-TCVSSGNLQVRHDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGG------KENINELKIW 178 (412)
T ss_pred cccchhhc-CCEEE-EEecCCcEEEEeccCCccccccceeeecCCceeeeccCCCCCceEecCc------hhcccceeee
Confidence 34444332 55544 444455 799987733 3333333355555554444444444444 34 789999
Q ss_pred ECCCCcEEEEEec----------CCceEEEEEcCC----eEEEEE-CCeEEEEECCCC-ceeeEEeCCCCCceEEEEeeC
Q 019349 81 NTTTGTALRELNF----------LTSILAVRLNKK----RLVIVL-REKTYIYDANTL-AILDTIDTVPNLKGLCAFSPS 144 (342)
Q Consensus 81 d~~~~~~~~~~~~----------~~~v~~i~~~~~----~~~~~~-d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~ 144 (342)
|+.+.+++.+... +--+.++.|-+. .++.++ -+++++||.+.+ +++.++....++ +.++...
T Consensus 179 dle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~--is~~~l~ 256 (412)
T KOG3881|consen 179 DLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENP--ISSTGLT 256 (412)
T ss_pred ecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCc--ceeeeec
Confidence 9999988876543 112456667443 333344 679999999865 577788776665 4445555
Q ss_pred CCccEEEEeCCCCccEEEEEEccCCceeEE-EecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcC
Q 019349 145 LNACFLAVPASTTKGSVLVYNVMELHSHCE-IDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTY 223 (342)
Q Consensus 145 ~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~-~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~ 223 (342)
|.+.++.++. ..|.+..+|++.++.... +++-.+.|++|..+|.+.+||++|-|. .+||+|+++.++++...-
T Consensus 257 p~gn~Iy~gn--~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDR-yvRIhD~ktrkll~kvYv--- 330 (412)
T KOG3881|consen 257 PSGNFIYTGN--TKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDR-YVRIHDIKTRKLLHKVYV--- 330 (412)
T ss_pred CCCcEEEEec--ccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccce-eEEEeecccchhhhhhhh---
Confidence 5666777776 579999999999987755 888999999999999999999999996 479999999777765533
Q ss_pred ceeEEEEEEecCCC
Q 019349 224 PSTIFSLSFGQSMQ 237 (342)
Q Consensus 224 ~~~v~~l~fs~d~~ 237 (342)
...++++-+.++-.
T Consensus 331 Ks~lt~il~~~~~n 344 (412)
T KOG3881|consen 331 KSRLTFILLRDDVN 344 (412)
T ss_pred hccccEEEecCCcc
Confidence 23467777766543
No 204
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.46 E-value=5.8e-12 Score=104.73 Aligned_cols=224 Identities=8% Similarity=0.113 Sum_probs=149.6
Q ss_pred CCeEEEEEC--CCCcEEEEE--ecCCceEEEEEcCCeE-----EEE-ECCeEEEEECCC--Ccee--eEEe---CCCCCc
Q 019349 74 PRRLCLFNT--TTGTALREL--NFLTSILAVRLNKKRL-----VIV-LREKTYIYDANT--LAIL--DTID---TVPNLK 136 (342)
Q Consensus 74 d~~i~iwd~--~~~~~~~~~--~~~~~v~~i~~~~~~~-----~~~-~d~~i~i~d~~~--~~~~--~~~~---~~~~~~ 136 (342)
.|+|.|..+ .+++.+..- .++-+++.+.|.|+.. .++ +++.+++|.+.. .+.. ..+. ......
T Consensus 72 ~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~D~LRlWri~~ee~~~~~~~~L~~~kns~~~a 151 (364)
T KOG0290|consen 72 NNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSSDFLRLWRIGDEESRVELQSVLNNNKNSEFCA 151 (364)
T ss_pred CCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhcccCeEEEEeccCcCCceehhhhhccCcccccCC
Confidence 467766554 455555444 4455889999987642 334 478999999873 2211 1121 222234
Q ss_pred eEEEEeeCCC-ccEEEEeCCCCccEEEEEEccCCce---eEEEecccCCeeEEEECCCC-CEEEEEeCCCcEEEEEEcCC
Q 019349 137 GLCAFSPSLN-ACFLAVPASTTKGSVLVYNVMELHS---HCEIDAHQAPLAAIVLSSNG-MYIATASEQGTIIRVFLVSE 211 (342)
Q Consensus 137 ~~~~~~~~~~-~~~l~~~~~~~~g~i~iwd~~~~~~---~~~~~~h~~~v~~i~~s~dg-~~lat~s~dg~~irlwd~~~ 211 (342)
.+.+|.++.- -.++.+++ -|-+-.|||++++.. ...+-+|..+|..|+|..++ +.+|+.|.||. +|+||++.
T Consensus 152 PlTSFDWne~dp~~igtSS--iDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGS-vRmFDLR~ 228 (364)
T KOG0290|consen 152 PLTSFDWNEVDPNLIGTSS--IDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGS-VRMFDLRS 228 (364)
T ss_pred cccccccccCCcceeEeec--ccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCc-EEEEEecc
Confidence 5667776543 34565555 689999999998743 45577999999999999865 67999999998 59999998
Q ss_pred CeeEEEeccCcC-ceeEEEEEEecCCCcccEEEEEeCCC-cEEEEecCCCCCC-CCCCCccccccccccccccccccccc
Q 019349 212 ATKSYSFRRGTY-PSTIFSLSFGQSMQFQDILVATSSSG-SLHVFSPGFAINQ-RRGGRTSSILGSILPESVNEVLDPAD 288 (342)
Q Consensus 212 ~~~~~~~~~~~~-~~~v~~l~fs~d~~~~~~l~~~s~dg-~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (342)
.+.-.-+..... ..+...++|++... +++|+-..|. .|.|-|++.+..+ .+ +..+....-...|.|..
T Consensus 229 leHSTIIYE~p~~~~pLlRLswnkqDp--nymATf~~dS~~V~iLDiR~P~tpva~-------L~~H~a~VNgIaWaPhS 299 (364)
T KOG0290|consen 229 LEHSTIIYEDPSPSTPLLRLSWNKQDP--NYMATFAMDSNKVVILDIRVPCTPVAR-------LRNHQASVNGIAWAPHS 299 (364)
T ss_pred cccceEEecCCCCCCcceeeccCcCCc--hHHhhhhcCCceEEEEEecCCCcceeh-------hhcCcccccceEecCCC
Confidence 754222222222 34588899998776 5888877665 5999999876432 22 22222222334677743
Q ss_pred cceeeeccCCCccccEEEEEEeCCcEEEEEEecC
Q 019349 289 HHVLRNAFPAGVKRASVSVITYNGYFVEYIFSIN 322 (342)
Q Consensus 289 ~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~~~~~ 322 (342)
...|.+++.|-++-+|++..-
T Consensus 300 -------------~~hictaGDD~qaliWDl~q~ 320 (364)
T KOG0290|consen 300 -------------SSHICTAGDDCQALIWDLQQM 320 (364)
T ss_pred -------------CceeeecCCcceEEEEecccc
Confidence 268999999999999998643
No 205
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.45 E-value=6.8e-12 Score=107.23 Aligned_cols=195 Identities=12% Similarity=0.167 Sum_probs=129.7
Q ss_pred ceEEEEEcCCeEEEEE---CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCcc-EEEEeCCCCccEEEEEEccCC--
Q 019349 96 SILAVRLNKKRLVIVL---REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNAC-FLAVPASTTKGSVLVYNVMEL-- 169 (342)
Q Consensus 96 ~v~~i~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~g~i~iwd~~~~-- 169 (342)
.++.++|++..+..+. |+.|++||-++ +....++ +.....+.++++.|... -++.+. .+.|-+|.....
T Consensus 100 dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lk-s~sQrnvtclawRPlsaselavgC---r~gIciW~~s~tln 174 (445)
T KOG2139|consen 100 DLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLK-SVSQRNVTCLAWRPLSASELAVGC---RAGICIWSDSRTLN 174 (445)
T ss_pred ceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceec-chhhcceeEEEeccCCcceeeeee---cceeEEEEcCcccc
Confidence 5778899887554433 88999999877 3333443 33445688888877543 444444 356999976321
Q ss_pred --c----------eeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCC
Q 019349 170 --H----------SHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQ 237 (342)
Q Consensus 170 --~----------~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~ 237 (342)
. .+..-++| .+|++|+|++||..|+++|-+..-|+|||..+++.+.-...+ .+.+.-+.||||+.
T Consensus 175 ~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~g--lgg~slLkwSPdgd 251 (445)
T KOG2139|consen 175 ANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKG--LGGFSLLKWSPDGD 251 (445)
T ss_pred cccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccC--CCceeeEEEcCCCC
Confidence 1 11222355 789999999999999999988777899999999876544332 34477899999998
Q ss_pred cccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEEEEEEeCCcEEEE
Q 019349 238 FQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEY 317 (342)
Q Consensus 238 ~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~ 317 (342)
+|.+++-|+..++|+........ ... +++ ......+|+|.+.+ .|++++..-.+|..
T Consensus 252 ---~lfaAt~davfrlw~e~q~wt~e----rw~-lgs--grvqtacWspcGsf-------------LLf~~sgsp~lysl 308 (445)
T KOG2139|consen 252 ---VLFAATCDAVFRLWQENQSWTKE----RWI-LGS--GRVQTACWSPCGSF-------------LLFACSGSPRLYSL 308 (445)
T ss_pred ---EEEEecccceeeeehhcccceec----cee-ccC--CceeeeeecCCCCE-------------EEEEEcCCceEEEE
Confidence 99999999999999754432111 001 111 12235699998843 35555555555555
Q ss_pred EEec
Q 019349 318 IFSI 321 (342)
Q Consensus 318 ~~~~ 321 (342)
.++.
T Consensus 309 ~f~~ 312 (445)
T KOG2139|consen 309 TFDG 312 (445)
T ss_pred eecC
Confidence 5543
No 206
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.42 E-value=2e-11 Score=111.90 Aligned_cols=234 Identities=16% Similarity=0.170 Sum_probs=153.8
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCC-CcEEEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEE
Q 019349 4 QSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSST-GRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFN 81 (342)
Q Consensus 4 ~~~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd 81 (342)
-.|...|+|++|+.||+.+|+|+.|. +.+|+..- |.+.|+ |...+.++.+.+-+..++.++- +..-+|.
T Consensus 50 KgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~LkYS-H~D~IQCMsFNP~~h~LasCsL--------sdFglWS 120 (1081)
T KOG1538|consen 50 KGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKYS-HNDAIQCMSFNPITHQLASCSL--------SDFGLWS 120 (1081)
T ss_pred ccccceEEEEEEccCCceeccCCCceeEEEecccccceeeec-cCCeeeEeecCchHHHhhhcch--------hhccccC
Confidence 46788999999999999999998776 59998653 344444 4455665555555566666654 4567887
Q ss_pred CCCCcEEEEEecCCceEEEEEcCCeEEEEE---CCeEEEEECCCCceeeEEeCC-CCCceEEEEeeCCCc-----cEEEE
Q 019349 82 TTTGTALRELNFLTSILAVRLNKKRLVIVL---REKTYIYDANTLAILDTIDTV-PNLKGLCAFSPSLNA-----CFLAV 152 (342)
Q Consensus 82 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-----~~l~~ 152 (342)
.... .+........+.+.+|+.++.+++. +|+|.|=+-. ++.-..++.+ .....+.+++++|.. ..+++
T Consensus 121 ~~qK-~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~-gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV 198 (1081)
T KOG1538|consen 121 PEQK-SVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKN-GEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAV 198 (1081)
T ss_pred hhhh-hHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCC-CCcceEEeCCCCCCCCceEEEecCCCCCCccceEEE
Confidence 6543 2333333457888899888766654 8898887643 3333334332 233456666666542 23333
Q ss_pred eCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEE
Q 019349 153 PASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSF 232 (342)
Q Consensus 153 ~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~f 232 (342)
.. ...++..+.+. |+.+..-+.-.-...|+.+-++|.++..|+.|+. +++|- +.|-.+.++. ....-|++++.
T Consensus 199 ~D--W~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~-L~~fT-R~GvrLGTvg--~~D~WIWtV~~ 271 (1081)
T KOG1538|consen 199 AD--WGQTLSFYQLS-GKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQ-LSLFT-RDGVRLGTVG--EQDSWIWTVQA 271 (1081)
T ss_pred Ee--ccceeEEEEec-ceeecccccCCCCchhheeccCCcEEEEccCCCc-eEEEe-ecCeEEeecc--ccceeEEEEEE
Confidence 33 33444444432 2222211122234578999999999999999986 46665 6777777663 23556999999
Q ss_pred ecCCCcccEEEEEeCCCcEEEEecCC
Q 019349 233 GQSMQFQDILVATSSSGSLHVFSPGF 258 (342)
Q Consensus 233 s~d~~~~~~l~~~s~dg~i~vwd~~~ 258 (342)
.|+++ ..+.|+.||||-.|++-.
T Consensus 272 ~PNsQ---~v~~GCqDGTiACyNl~f 294 (1081)
T KOG1538|consen 272 KPNSQ---YVVVGCQDGTIACYNLIF 294 (1081)
T ss_pred ccCCc---eEEEEEccCeeehhhhHH
Confidence 99999 999999999999998743
No 207
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.42 E-value=4e-11 Score=101.01 Aligned_cols=201 Identities=14% Similarity=0.094 Sum_probs=138.8
Q ss_pred CCCeEEEEEcCCCCEEEEEcCC-cEEEEeCCCCc---EE--EEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEE
Q 019349 7 SYPVFFVSFNQDNSGFALSTKD-GFKIFDSSTGR---LC--YERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLF 80 (342)
Q Consensus 7 ~~~V~~l~fs~d~~~la~g~~~-g~~v~d~~~~~---~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iw 80 (342)
..+|+|.+|++|++.+|++.+. .+.||...... .. +..|...+..+++.+..+.+..++. |+.-.+|
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~-------drnayVw 82 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSH-------DRNAYVW 82 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccC-------CCCcccc
Confidence 4789999999999999999776 57898765543 21 2234466677777777777777764 6666777
Q ss_pred EC-CCCcEEEEEecCCceEEEEEcCCeEEEEECCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCcc
Q 019349 81 NT-TTGTALRELNFLTSILAVRLNKKRLVIVLREKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKG 159 (342)
Q Consensus 81 d~-~~~~~~~~~~~~~~v~~i~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g 159 (342)
.. ..++...++. +..+ .....++.++|++..+|+++ ...
T Consensus 83 ~~~~~~~Wkptlv---------------------------------LlRi-----NrAAt~V~WsP~enkFAVgS--gar 122 (361)
T KOG1523|consen 83 TQPSGGTWKPTLV---------------------------------LLRI-----NRAATCVKWSPKENKFAVGS--GAR 122 (361)
T ss_pred ccCCCCeecccee---------------------------------EEEe-----ccceeeEeecCcCceEEecc--Ccc
Confidence 65 2222111110 0011 22455667777777888776 467
Q ss_pred EEEEEEccCCcee----EEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCC------------------CeeEEE
Q 019349 160 SVLVYNVMELHSH----CEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSE------------------ATKSYS 217 (342)
Q Consensus 160 ~i~iwd~~~~~~~----~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~------------------~~~~~~ 217 (342)
.|.||-.+....- +.-+.+.+.|++++|+|++-+||+||.|+.. |||...- |+++.+
T Consensus 123 ~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~-rVfSayIK~Vdekpap~pWgsk~PFG~lm~E 201 (361)
T KOG1523|consen 123 LISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKC-RVFSAYIKGVDEKPAPTPWGSKMPFGQLMSE 201 (361)
T ss_pred EEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcce-eEEEEeeeccccCCCCCCCccCCcHHHHHHh
Confidence 8888887654321 1223578899999999999999999999985 8987521 112223
Q ss_pred eccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCC
Q 019349 218 FRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAI 260 (342)
Q Consensus 218 ~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~ 260 (342)
+. ...+-+..+.|+|+|. .|+-.+.|.++.+=|...+.
T Consensus 202 ~~--~~ggwvh~v~fs~sG~---~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 202 AS--SSGGWVHGVLFSPSGN---RLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred hc--cCCCceeeeEeCCCCC---EeeEecCCCceEEeecCCCc
Confidence 31 1234589999999998 99999999999999987765
No 208
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.42 E-value=4.9e-11 Score=102.96 Aligned_cols=242 Identities=14% Similarity=0.123 Sum_probs=158.5
Q ss_pred CCCCeEEEEEcCCCCE-EEEEc--CCcEEEEeCCCCcEEEEE------eeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCe
Q 019349 6 SSYPVFFVSFNQDNSG-FALST--KDGFKIFDSSTGRLCYER------AVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRR 76 (342)
Q Consensus 6 ~~~~V~~l~fs~d~~~-la~g~--~~g~~v~d~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~ 76 (342)
....|.+++|.-|++. +..+. ++-+..+.+..+.+.... ..+.-.+..+......+.++-. ++.
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~dg~Litc~~-------sG~ 126 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLADGTLITCVS-------SGN 126 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhcCCEEEEEec-------CCc
Confidence 3456788888877753 33333 333555555444332221 1122233344444455555543 789
Q ss_pred EEEEECCCCc----EEEEEecCCceEEEEEcCCe-EEEE-E--C--CeEEEEECCCCceeeEEeCCCCC-------ceEE
Q 019349 77 LCLFNTTTGT----ALRELNFLTSILAVRLNKKR-LVIV-L--R--EKTYIYDANTLAILDTIDTVPNL-------KGLC 139 (342)
Q Consensus 77 i~iwd~~~~~----~~~~~~~~~~v~~i~~~~~~-~~~~-~--d--~~i~i~d~~~~~~~~~~~~~~~~-------~~~~ 139 (342)
+.+|..+.+. .+..+.....+..+.-.+.. -+++ + . +.++|||++..+.+.+-...++. .=+.
T Consensus 127 l~~~~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~t 206 (412)
T KOG3881|consen 127 LQVRHDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWIT 206 (412)
T ss_pred EEEEeccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeec
Confidence 9999988443 33344444555555554432 2233 2 3 57899999887555443322221 1111
Q ss_pred EEeeCCC--ccEEEEeCCCCccEEEEEEccCC-ceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEE
Q 019349 140 AFSPSLN--ACFLAVPASTTKGSVLVYNVMEL-HSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSY 216 (342)
Q Consensus 140 ~~~~~~~--~~~l~~~~~~~~g~i~iwd~~~~-~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~ 216 (342)
.+-+-+. ...+|++. .-++|++||.+.+ +++..+.--+.+|+++...|+|+++++|-.-|.+ ..||++.++.+.
T Consensus 207 di~Fl~g~~~~~fat~T--~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l-~~FD~r~~kl~g 283 (412)
T KOG3881|consen 207 DIRFLEGSPNYKFATIT--RYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQL-AKFDLRGGKLLG 283 (412)
T ss_pred cceecCCCCCceEEEEe--cceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchh-heecccCceeec
Confidence 2222222 45667666 4699999999765 4788888888999999999999999999999985 799999999887
Q ss_pred EeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCC
Q 019349 217 SFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAIN 261 (342)
Q Consensus 217 ~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~ 261 (342)
....+ ..+.|.++..+|..+ +||+++-|..|+|+|+++.+.
T Consensus 284 ~~~kg-~tGsirsih~hp~~~---~las~GLDRyvRIhD~ktrkl 324 (412)
T KOG3881|consen 284 CGLKG-ITGSIRSIHCHPTHP---VLASCGLDRYVRIHDIKTRKL 324 (412)
T ss_pred cccCC-ccCCcceEEEcCCCc---eEEeeccceeEEEeecccchh
Confidence 74433 245699999999999 999999999999999998554
No 209
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.41 E-value=3.5e-12 Score=116.04 Aligned_cols=178 Identities=12% Similarity=0.169 Sum_probs=127.9
Q ss_pred CCeEEEEECCCC-cE----EEEEecCCceEEEEEcC---CeEEEEE-CCeEEEEECCCCce-------eeEEeCCCCCce
Q 019349 74 PRRLCLFNTTTG-TA----LRELNFLTSILAVRLNK---KRLVIVL-REKTYIYDANTLAI-------LDTIDTVPNLKG 137 (342)
Q Consensus 74 d~~i~iwd~~~~-~~----~~~~~~~~~v~~i~~~~---~~~~~~~-d~~i~i~d~~~~~~-------~~~~~~~~~~~~ 137 (342)
-+.|-|+++... +. +-.+.....|.++.|+| .+++++. |+.|++|.+..+.. -..+..| ...
T Consensus 602 gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h--~eK 679 (1012)
T KOG1445|consen 602 GGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIH--GEK 679 (1012)
T ss_pred CceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecc--cce
Confidence 478999998653 32 22333345789998865 5788888 78999999965322 2223332 346
Q ss_pred EEEEeeCCCc-cEEEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCee-E
Q 019349 138 LCAFSPSLNA-CFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATK-S 215 (342)
Q Consensus 138 ~~~~~~~~~~-~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~-~ 215 (342)
++.+-++|-. ..|++++ .|-+|++||+++++....+.+|.+.|..++|||||+.+||-+.||+ +|++.-++++. +
T Consensus 680 I~slRfHPLAadvLa~as--yd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~-~rVy~Prs~e~pv 756 (1012)
T KOG1445|consen 680 ITSLRFHPLAADVLAVAS--YDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGT-LRVYEPRSREQPV 756 (1012)
T ss_pred EEEEEecchhhhHhhhhh--ccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCce-EEEeCCCCCCCcc
Confidence 7777777732 3566666 5899999999999998999999999999999999999999999998 59999988753 3
Q ss_pred EEeccCcCceeEEEEEEecCCCcccEEEEEeCCC----cEEEEecCCCC
Q 019349 216 YSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSG----SLHVFSPGFAI 260 (342)
Q Consensus 216 ~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg----~i~vwd~~~~~ 260 (342)
++= .+.....--.+.|--|++ ++++.+.|. .|.+||..+-.
T Consensus 757 ~Eg-~gpvgtRgARi~wacdgr---~viv~Gfdk~SeRQv~~Y~Aq~l~ 801 (1012)
T KOG1445|consen 757 YEG-KGPVGTRGARILWACDGR---IVIVVGFDKSSERQVQMYDAQTLD 801 (1012)
T ss_pred ccC-CCCccCcceeEEEEecCc---EEEEecccccchhhhhhhhhhhcc
Confidence 322 121112233467888998 888877664 58888876543
No 210
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.41 E-value=1.5e-12 Score=106.75 Aligned_cols=135 Identities=16% Similarity=0.218 Sum_probs=99.4
Q ss_pred CCCCeEEEEECCCCcEEEEE-----------ecCCceEEEEEcCCeE--EE-EECCeEEEEECCC--CceeeEEeCCCCC
Q 019349 72 LSPRRLCLFNTTTGTALREL-----------NFLTSILAVRLNKKRL--VI-VLREKTYIYDANT--LAILDTIDTVPNL 135 (342)
Q Consensus 72 ~~d~~i~iwd~~~~~~~~~~-----------~~~~~v~~i~~~~~~~--~~-~~d~~i~i~d~~~--~~~~~~~~~~~~~ 135 (342)
+.++.+.+||+.++..+..+ .+..+|.++.+.+... +. ..+..+..|++.. +.+.......-..
T Consensus 172 yEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lkn 251 (323)
T KOG0322|consen 172 YESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKN 251 (323)
T ss_pred ccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecC
Confidence 46899999999987444332 2345777777754321 11 2256788888753 3322111111112
Q ss_pred ceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEc
Q 019349 136 KGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLV 209 (342)
Q Consensus 136 ~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~ 209 (342)
-++..+..-||++.+|++| .|+.|+||..++..++..++-|...|++++|+|+...+|.||.|++ |-+|++
T Consensus 252 pGv~gvrIRpD~KIlATAG--WD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~r-ISLWkL 322 (323)
T KOG0322|consen 252 PGVSGVRIRPDGKILATAG--WDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDAR-ISLWKL 322 (323)
T ss_pred CCccceEEccCCcEEeecc--cCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCce-EEeeec
Confidence 3555667788999999999 7999999999999999999999999999999999999999999998 579986
No 211
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.41 E-value=2.4e-10 Score=106.31 Aligned_cols=214 Identities=15% Similarity=0.059 Sum_probs=137.0
Q ss_pred EEEEeCCCCcE-EEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEEEEEecCCceEEEEEcCCeE-
Q 019349 30 FKIFDSSTGRL-CYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKRL- 107 (342)
Q Consensus 30 ~~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~i~~~~~~~- 107 (342)
+.++|.+.... ........+....+.++++.+++++... .+..|.+||+.+++......++..+....|+|++.
T Consensus 181 l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~----g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~ 256 (429)
T PRK03629 181 LRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFES----GRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSK 256 (429)
T ss_pred EEEEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecC----CCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCE
Confidence 56677765432 2222334566678888888888876321 24679999998887554444555566788988864
Q ss_pred -EEEE--CC--eEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEE--EEccCCceeEEEecccC
Q 019349 108 -VIVL--RE--KTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLV--YNVMELHSHCEIDAHQA 180 (342)
Q Consensus 108 -~~~~--d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~i--wd~~~~~~~~~~~~h~~ 180 (342)
++.. ++ .|++||+.+++..+... . ........++|++..|++.+. .+|..+| +|+.+++. ..+..+..
T Consensus 257 La~~~~~~g~~~I~~~d~~tg~~~~lt~-~--~~~~~~~~wSPDG~~I~f~s~-~~g~~~Iy~~d~~~g~~-~~lt~~~~ 331 (429)
T PRK03629 257 LAFALSKTGSLNLYVMDLASGQIRQVTD-G--RSNNTEPTWFPDSQNLAYTSD-QAGRPQVYKVNINGGAP-QRITWEGS 331 (429)
T ss_pred EEEEEcCCCCcEEEEEECCCCCEEEccC-C--CCCcCceEECCCCCEEEEEeC-CCCCceEEEEECCCCCe-EEeecCCC
Confidence 3332 33 69999998876543322 2 223455677888888887663 3444444 46666543 34444444
Q ss_pred CeeEEEECCCCCEEEEEeCCC--cEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCc---EEEEe
Q 019349 181 PLAAIVLSSNGMYIATASEQG--TIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGS---LHVFS 255 (342)
Q Consensus 181 ~v~~i~~s~dg~~lat~s~dg--~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~---i~vwd 255 (342)
......|+|||++|+..+.++ ..|.+||+.+++. ..+... .......|+|||+ +|+.++.++. +.+++
T Consensus 332 ~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~-~~Lt~~---~~~~~p~~SpDG~---~i~~~s~~~~~~~l~~~~ 404 (429)
T PRK03629 332 QNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLTDT---FLDETPSIAPNGT---MVIYSSSQGMGSVLNLVS 404 (429)
T ss_pred CccCEEECCCCCEEEEEEccCCCceEEEEECCCCCe-EEeCCC---CCCCCceECCCCC---EEEEEEcCCCceEEEEEE
Confidence 566789999999998876543 2356899988764 333322 1234578999999 8999988765 67777
Q ss_pred cCCC
Q 019349 256 PGFA 259 (342)
Q Consensus 256 ~~~~ 259 (342)
++..
T Consensus 405 ~~G~ 408 (429)
T PRK03629 405 TDGR 408 (429)
T ss_pred CCCC
Confidence 7544
No 212
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.40 E-value=2e-11 Score=116.95 Aligned_cols=188 Identities=14% Similarity=0.160 Sum_probs=129.7
Q ss_pred CCeEEEEE-CCeEEEEECCCCceeeEEeCCCCCce--EEEEeeCCCccEEEEeCCCCccEEEEEEccCCceeEEEecccC
Q 019349 104 KKRLVIVL-REKTYIYDANTLAILDTIDTVPNLKG--LCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQA 180 (342)
Q Consensus 104 ~~~~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~ 180 (342)
...+++.. ++.+-+||.........+........ .+..-.+++..+++++. .-|.|.+|+....+.-..+.+|++
T Consensus 99 ~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gs--v~~~iivW~~~~dn~p~~l~GHeG 176 (967)
T KOG0974|consen 99 NKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGS--VFGEIIVWKPHEDNKPIRLKGHEG 176 (967)
T ss_pred cceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEecc--ccccEEEEeccccCCcceecccCC
Confidence 33445544 88999999988777666543322111 11222345666777766 579999999874333336889999
Q ss_pred CeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCC
Q 019349 181 PLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAI 260 (342)
Q Consensus 181 ~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~ 260 (342)
.|-++.++.||++++|.|+|.+ +|+|++.+.+....-- -.|.+.+..+.|.|+ + +++++.|-+.++|+.+...
T Consensus 177 ~iF~i~~s~dg~~i~s~SdDRs-iRlW~i~s~~~~~~~~-fgHsaRvw~~~~~~n-~----i~t~gedctcrvW~~~~~~ 249 (967)
T KOG0974|consen 177 SIFSIVTSLDGRYIASVSDDRS-IRLWPIDSREVLGCTG-FGHSARVWACCFLPN-R----IITVGEDCTCRVWGVNGTQ 249 (967)
T ss_pred ceEEEEEccCCcEEEEEecCcc-eeeeecccccccCccc-ccccceeEEEEeccc-e----eEEeccceEEEEEecccce
Confidence 9999999999999999999987 6999999987654211 135778999999987 4 9999999999999655432
Q ss_pred CCCCCCCccccccccccccccccccccccceeeeccCCCccccEEEEEEeCCcEEEEEEec
Q 019349 261 NQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSI 321 (342)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~~~~ 321 (342)
-. .+....-..+|..+- .+....+++++-||.+++|++.-
T Consensus 250 l~-----------~y~~h~g~~iw~~~~----------~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 250 LE-----------VYDEHSGKGIWKIAV----------PIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred eh-----------hhhhhhhcceeEEEE----------cCCceEEEeeccCcchhhhhhhc
Confidence 21 111111122443322 22335788999999999998753
No 213
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.40 E-value=9.4e-10 Score=102.30 Aligned_cols=177 Identities=12% Similarity=0.017 Sum_probs=113.3
Q ss_pred CCeEEEEECCCCcEEEEEecCCceEEEEEcCCeEEEE--E----CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCc
Q 019349 74 PRRLCLFNTTTGTALRELNFLTSILAVRLNKKRLVIV--L----REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNA 147 (342)
Q Consensus 74 d~~i~iwd~~~~~~~~~~~~~~~v~~i~~~~~~~~~~--~----d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (342)
...|.+||........-......+....|+|++..++ + +..+++|++.+++....... .. ......++||+
T Consensus 178 ~~~l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~-~~--~~~~~~~SPDG 254 (429)
T PRK03629 178 PYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASF-PR--HNGAPAFSPDG 254 (429)
T ss_pred ceeEEEEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCC-CC--CcCCeEECCCC
Confidence 4579999987654433334455788999999864333 2 24799999988754322211 11 12345678888
Q ss_pred cEEEEeCC-CCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEE--EcCCCeeEEEeccCcCc
Q 019349 148 CFLAVPAS-TTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVF--LVSEATKSYSFRRGTYP 224 (342)
Q Consensus 148 ~~l~~~~~-~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlw--d~~~~~~~~~~~~~~~~ 224 (342)
..|++... ..+..|.+||+.+++.. .+..+...+....|+|||+.|+..+.++...+|| |+.+++. ..+... .
T Consensus 255 ~~La~~~~~~g~~~I~~~d~~tg~~~-~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt~~--~ 330 (429)
T PRK03629 255 SKLAFALSKTGSLNLYVMDLASGQIR-QVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP-QRITWE--G 330 (429)
T ss_pred CEEEEEEcCCCCcEEEEEECCCCCEE-EccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe-EEeecC--C
Confidence 88887532 12236999999887654 3444455678899999999998888654223455 6666543 233211 2
Q ss_pred eeEEEEEEecCCCcccEEEEEeCC---CcEEEEecCCCC
Q 019349 225 STIFSLSFGQSMQFQDILVATSSS---GSLHVFSPGFAI 260 (342)
Q Consensus 225 ~~v~~l~fs~d~~~~~~l~~~s~d---g~i~vwd~~~~~ 260 (342)
......+|+||++ +|+..+.+ ..|.+||++++.
T Consensus 331 ~~~~~~~~SpDG~---~Ia~~~~~~g~~~I~~~dl~~g~ 366 (429)
T PRK03629 331 SQNQDADVSSDGK---FMVMVSSNGGQQHIAKQDLATGG 366 (429)
T ss_pred CCccCEEECCCCC---EEEEEEccCCCceEEEEECCCCC
Confidence 2345688999999 88776544 348888987664
No 214
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.39 E-value=6.9e-10 Score=100.57 Aligned_cols=238 Identities=12% Similarity=0.137 Sum_probs=143.4
Q ss_pred EEEEEcCCCCEEEEEcCCc-EEEEeCCCCcEEEEEeeCC-EEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEE
Q 019349 11 FFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAVGA-FSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTAL 88 (342)
Q Consensus 11 ~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~ 88 (342)
..+.|+|||+++.+++.++ +.++|+.+.+++.+...+. ...+.+..+++++++... .++++.++|.++.+.+
T Consensus 40 ~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~~s~DG~~~~v~n~------~~~~v~v~D~~tle~v 113 (369)
T PF02239_consen 40 AGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIAVSPDGKYVYVANY------EPGTVSVIDAETLEPV 113 (369)
T ss_dssp EEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEEE--TTTEEEEEEE------ETTEEEEEETTT--EE
T ss_pred eEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEEEcCCCCEEEEEec------CCCceeEeccccccce
Confidence 4578999999988777666 6999999999877765543 334677788888876654 5899999999999999
Q ss_pred EEEecC--------CceEEEEEcCC--eEEEEE--CCeEEEEECCCCcee--eEEeCCCCCceEEEEeeCCCccEEEEeC
Q 019349 89 RELNFL--------TSILAVRLNKK--RLVIVL--REKTYIYDANTLAIL--DTIDTVPNLKGLCAFSPSLNACFLAVPA 154 (342)
Q Consensus 89 ~~~~~~--------~~v~~i~~~~~--~~~~~~--d~~i~i~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 154 (342)
..+... +.+.+|..++. .+++.. .++|.+-|..+.+.+ ..+.... ......++|+++++..+.
T Consensus 114 ~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~---~~~D~~~dpdgry~~va~ 190 (369)
T PF02239_consen 114 KTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGR---FPHDGGFDPDGRYFLVAA 190 (369)
T ss_dssp EEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--T---TEEEEEE-TTSSEEEEEE
T ss_pred eecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccc---cccccccCcccceeeecc
Confidence 887642 24566655443 344444 368888888776533 3333322 233455667777665543
Q ss_pred CCCccEEEEEEccCCceeEEE-------------------------------------------------------eccc
Q 019349 155 STTKGSVLVYNVMELHSHCEI-------------------------------------------------------DAHQ 179 (342)
Q Consensus 155 ~~~~g~i~iwd~~~~~~~~~~-------------------------------------------------------~~h~ 179 (342)
. ..+.|-++|.++++.+..+ +...
T Consensus 191 ~-~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G 269 (369)
T PF02239_consen 191 N-GSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQG 269 (369)
T ss_dssp G-GGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SS
T ss_pred c-ccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCC
Confidence 3 4567777777665543322 1111
Q ss_pred CCeeEEEECCCCCEEEEE---eCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeC-CC-cEEEE
Q 019349 180 APLAAIVLSSNGMYIATA---SEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSS-SG-SLHVF 254 (342)
Q Consensus 180 ~~v~~i~~s~dg~~lat~---s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~-dg-~i~vw 254 (342)
.+ .-+..+|++++|... +.+...|.++|.++.+.+.++..+. ...+..+.|++||+ ++..+.. .+ .|.||
T Consensus 270 ~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~-~~~~~h~ef~~dG~---~v~vS~~~~~~~i~v~ 344 (369)
T PF02239_consen 270 GG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGP-GKRVVHMEFNPDGK---EVWVSVWDGNGAIVVY 344 (369)
T ss_dssp SS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHH-T--EEEEEE-TTSS---EEEEEEE--TTEEEEE
T ss_pred Cc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccC-CCcEeccEECCCCC---EEEEEEecCCCEEEEE
Confidence 12 236679999999998 4443346899999998887775332 22378899999998 5554443 33 79999
Q ss_pred ecCCCCCCC
Q 019349 255 SPGFAINQR 263 (342)
Q Consensus 255 d~~~~~~~~ 263 (342)
|.++.+..+
T Consensus 345 D~~Tl~~~~ 353 (369)
T PF02239_consen 345 DAKTLKEKK 353 (369)
T ss_dssp ETTTTEEEE
T ss_pred ECCCcEEEE
Confidence 998877544
No 215
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.38 E-value=1.8e-11 Score=109.49 Aligned_cols=199 Identities=15% Similarity=0.124 Sum_probs=136.8
Q ss_pred EEEEEcCCc-EEEEeCCCCcEEE--EEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEEEE-EecCCc
Q 019349 21 GFALSTKDG-FKIFDSSTGRLCY--ERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRE-LNFLTS 96 (342)
Q Consensus 21 ~la~g~~~g-~~v~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~-~~~~~~ 96 (342)
.|+.++.|| +.+-+ ..++... +.|.+.+..-.|.+++..++.+| .|+.|++|. ++|-...+ .+...+
T Consensus 77 ~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~G-------EDG~iKiWS-rsGMLRStl~Q~~~~ 147 (737)
T KOG1524|consen 77 TLLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAG-------EDGVIKIWS-RSGMLRSTVVQNEES 147 (737)
T ss_pred eEEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeec-------CCceEEEEe-ccchHHHHHhhcCce
Confidence 456666666 55554 3344332 23444455555666666666655 499999997 34433222 345679
Q ss_pred eEEEEEcCCe--EEEEECCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCceeEE
Q 019349 97 ILAVRLNKKR--LVIVLREKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCE 174 (342)
Q Consensus 97 v~~i~~~~~~--~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~ 174 (342)
|++++|.|+. ++.+..+.+.|=.+.-...+-..+.| ..-+.++++++....++++| .|-..+|||.. |..+.+
T Consensus 148 v~c~~W~p~S~~vl~c~g~h~~IKpL~~n~k~i~WkAH--DGiiL~~~W~~~s~lI~sgG--ED~kfKvWD~~-G~~Lf~ 222 (737)
T KOG1524|consen 148 IRCARWAPNSNSIVFCQGGHISIKPLAANSKIIRWRAH--DGLVLSLSWSTQSNIIASGG--EDFRFKIWDAQ-GANLFT 222 (737)
T ss_pred eEEEEECCCCCceEEecCCeEEEeecccccceeEEecc--CcEEEEeecCccccceeecC--CceeEEeeccc-Cccccc
Confidence 9999998864 44444778888777544333344444 44678899999988999988 68999999954 567777
Q ss_pred EecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEE
Q 019349 175 IDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLH 252 (342)
Q Consensus 175 ~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~ 252 (342)
-..|+.+|++++|+|| +.++.+|-. + .| |. ....+.|..++||+||. .+++|+..|.+-
T Consensus 223 S~~~ey~ITSva~npd-~~~~v~S~n-t-~R------------~~-~p~~GSifnlsWS~DGT---Q~a~gt~~G~v~ 281 (737)
T KOG1524|consen 223 SAAEEYAITSVAFNPE-KDYLLWSYN-T-AR------------FS-SPRVGSIFNLSWSADGT---QATCGTSTGQLI 281 (737)
T ss_pred CChhccceeeeeeccc-cceeeeeee-e-ee------------ec-CCCccceEEEEEcCCCc---eeeccccCceEE
Confidence 7889999999999999 777777754 3 35 11 12234599999999999 999999988753
No 216
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.38 E-value=4.8e-10 Score=101.64 Aligned_cols=188 Identities=14% Similarity=0.124 Sum_probs=143.8
Q ss_pred CCeEEEEcCCCCCCCCCCeEEEEECCCCcEEEEEec----CCceEEEEEc--------------------CCeEEEEE--
Q 019349 58 SSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNF----LTSILAVRLN--------------------KKRLVIVL-- 111 (342)
Q Consensus 58 ~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~~~~----~~~v~~i~~~--------------------~~~~~~~~-- 111 (342)
..++|+..+ |+.+++||..+++.-.++.. .+...+..|. .+..+++.
T Consensus 5 ~~~~A~~~~-------~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt 77 (541)
T KOG4547|consen 5 LDYFALSTG-------DGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGT 77 (541)
T ss_pred hheEeecCC-------CCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeec
Confidence 356677765 89999999999887766643 2233333321 12223322
Q ss_pred -CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCC
Q 019349 112 -REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSN 190 (342)
Q Consensus 112 -d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~d 190 (342)
.+.|.+|++..++....+.+..++..+.++..+.+...|-+++ .|+.+-.|+......++.+++-...+.+++++||
T Consensus 78 ~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~--ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D 155 (541)
T KOG4547|consen 78 PQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVG--ADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPD 155 (541)
T ss_pred CCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecC--CceeEEEEecccceeeeeeccCCCccceEEEcCC
Confidence 6799999999999999998877777777777666655666666 6899999999999999999998899999999999
Q ss_pred CCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecC-----CCcccEEEEEeCCCcEEEEecCCCCC
Q 019349 191 GMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQS-----MQFQDILVATSSSGSLHVFSPGFAIN 261 (342)
Q Consensus 191 g~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d-----~~~~~~l~~~s~dg~i~vwd~~~~~~ 261 (342)
|..|++|| ++ |++||+++++.+..|.. |.++|.+++|.-+ |. .+|.+...+.-+.+|-++...+
T Consensus 156 ~~~l~~as--~~-ik~~~~~~kevv~~ftg--h~s~v~t~~f~~~~~g~~G~--~vLssa~~~r~i~~w~v~~~~k 224 (541)
T KOG4547|consen 156 GKILLTAS--RQ-IKVLDIETKEVVITFTG--HGSPVRTLSFTTLIDGIIGK--YVLSSAAAERGITVWVVEKEDK 224 (541)
T ss_pred CCEEEecc--ce-EEEEEccCceEEEEecC--CCcceEEEEEEEeccccccc--eeeeccccccceeEEEEEcccc
Confidence 99999998 34 69999999999999964 4678999999877 55 2555556677789998776433
No 217
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.37 E-value=8.3e-12 Score=112.19 Aligned_cols=205 Identities=12% Similarity=0.106 Sum_probs=133.8
Q ss_pred CCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCC------------cEEEEEeeCCEEEEEEcCCCCeEEEEcCCCC
Q 019349 3 NQSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTG------------RLCYERAVGAFSIVEMLYSSSLLAIVGAGEQ 69 (342)
Q Consensus 3 ~~~~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 69 (342)
...|.+||.|++..+.+..+.+|+-|| ++.|++... .-.+..+...+-.+.+....+.++.++
T Consensus 340 fraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs---- 415 (577)
T KOG0642|consen 340 FRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCS---- 415 (577)
T ss_pred EecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeec----
Confidence 346889999999999999999998887 699965321 112333334444445544555666665
Q ss_pred CCCCCCeEEEEECCCCcEEEEEec---CCceEEEEEcCCeEEEE-ECCeEEEEECCCC---ceeeEEeCCC--CC---ce
Q 019349 70 PSLSPRRLCLFNTTTGTALRELNF---LTSILAVRLNKKRLVIV-LREKTYIYDANTL---AILDTIDTVP--NL---KG 137 (342)
Q Consensus 70 ~~~~d~~i~iwd~~~~~~~~~~~~---~~~v~~i~~~~~~~~~~-~d~~i~i~d~~~~---~~~~~~~~~~--~~---~~ 137 (342)
.|+++++|+...... .++.. .+....+.+-....... .+.....+++.+. +.+..+.... .+ ..
T Consensus 416 ---~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~ 491 (577)
T KOG0642|consen 416 ---SDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQ 491 (577)
T ss_pred ---CCceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCc
Confidence 499999999876665 22221 22345555544432222 2334444444333 2222222111 11 11
Q ss_pred EEEEeeCCCccEEEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEE
Q 019349 138 LCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYS 217 (342)
Q Consensus 138 ~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~ 217 (342)
+.-+-.+|+..+.+.+. .++.|+++|..+++.+....+|...++++++.|+|-+|++++.||. +++|.+....++.+
T Consensus 492 in~vVs~~~~~~~~~~h--ed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~s-v~l~kld~k~~~~e 568 (577)
T KOG0642|consen 492 INKVVSHPTADITFTAH--EDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGS-VRLWKLDVKTCVLE 568 (577)
T ss_pred cceEEecCCCCeeEecc--cCCceecccccccccchheeeccceecceeecCCCceEEeecCCce-eehhhccchheeec
Confidence 22233345555665555 6999999999999999999999999999999999999999999998 58999977766554
Q ss_pred e
Q 019349 218 F 218 (342)
Q Consensus 218 ~ 218 (342)
.
T Consensus 569 s 569 (577)
T KOG0642|consen 569 S 569 (577)
T ss_pred c
Confidence 4
No 218
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.36 E-value=6.3e-09 Score=92.59 Aligned_cols=235 Identities=11% Similarity=0.046 Sum_probs=148.7
Q ss_pred EcCCCCEEEEEcC-----------CcEEEEeCCCCcEEEEEeeCCE---------EEEEEcCCCCeEEEEcCCCCCCCCC
Q 019349 15 FNQDNSGFALSTK-----------DGFKIFDSSTGRLCYERAVGAF---------SIVEMLYSSSLLAIVGAGEQPSLSP 74 (342)
Q Consensus 15 fs~d~~~la~g~~-----------~g~~v~d~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~g~~~~~~d 74 (342)
+||||+.|+++.. +.+.+||+.+.+.+.+...+.- ..+.+.++++.+.+..-. .+
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~-----p~ 127 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFS-----PS 127 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCC-----CC
Confidence 9999999876654 4579999999988766553221 145566666666655431 37
Q ss_pred CeEEEEECCCCcEEEEEecCCceEEEEEcCCe-EEEEECCeEEEEECCC-Ccee-eEEeC-CC--CCceEE-EEeeCCCc
Q 019349 75 RRLCLFNTTTGTALRELNFLTSILAVRLNKKR-LVIVLREKTYIYDANT-LAIL-DTIDT-VP--NLKGLC-AFSPSLNA 147 (342)
Q Consensus 75 ~~i~iwd~~~~~~~~~~~~~~~v~~i~~~~~~-~~~~~d~~i~i~d~~~-~~~~-~~~~~-~~--~~~~~~-~~~~~~~~ 147 (342)
+.|-+.|+.+++.+.++..+....-...+++. .+.+.|+......+.+ ++.. ..... +. .+.... .+.+ .++
T Consensus 128 ~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~-~dg 206 (352)
T TIGR02658 128 PAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSN-KSG 206 (352)
T ss_pred CEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEc-CCC
Confidence 89999999999999999877644444444443 3444577666555533 2211 11111 00 000000 1222 255
Q ss_pred cEEEEeCCCCccEEEEEEccCC-----ceeEEEec-------ccCCeeEEEECCCCCEEEEEeCC---------CcEEEE
Q 019349 148 CFLAVPASTTKGSVLVYNVMEL-----HSHCEIDA-------HQAPLAAIVLSSNGMYIATASEQ---------GTIIRV 206 (342)
Q Consensus 148 ~~l~~~~~~~~g~i~iwd~~~~-----~~~~~~~~-------h~~~v~~i~~s~dg~~lat~s~d---------g~~irl 206 (342)
.++..+. .|+|.+.|+... +....+.. ....+.-++++++|+.|..+... ++-+-+
T Consensus 207 ~~~~vs~---eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~V 283 (352)
T TIGR02658 207 RLVWPTY---TGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFV 283 (352)
T ss_pred cEEEEec---CCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEE
Confidence 5665543 499999996433 33333221 22334459999999988885311 123579
Q ss_pred EEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEe-CCCcEEEEecCCCCCCC
Q 019349 207 FLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATS-SSGSLHVFSPGFAINQR 263 (342)
Q Consensus 207 wd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s-~dg~i~vwd~~~~~~~~ 263 (342)
+|..+++.+..+..+ ..+..|+|+||++ .+|.+.. .++.|.++|+.+.+..+
T Consensus 284 iD~~t~kvi~~i~vG---~~~~~iavS~Dgk--p~lyvtn~~s~~VsViD~~t~k~i~ 336 (352)
T TIGR02658 284 VDAKTGKRLRKIELG---HEIDSINVSQDAK--PLLYALSTGDKTLYIFDAETGKELS 336 (352)
T ss_pred EECCCCeEEEEEeCC---CceeeEEECCCCC--eEEEEeCCCCCcEEEEECcCCeEEe
Confidence 999999999988654 3578999999997 3555555 57899999998887654
No 219
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.34 E-value=1.6e-09 Score=92.94 Aligned_cols=285 Identities=14% Similarity=0.160 Sum_probs=171.5
Q ss_pred CCCeEEEEEcCCCCEEEEEcC-CcEEEEeCCCC--cEEEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECC
Q 019349 7 SYPVFFVSFNQDNSGFALSTK-DGFKIFDSSTG--RLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTT 83 (342)
Q Consensus 7 ~~~V~~l~fs~d~~~la~g~~-~g~~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~ 83 (342)
+-.++.++|+|--..+|++.. |.+|+||-... ..+.+.....+.++++.+.+...+.++. ..-|.+|...
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~ksst~pt~Lks~sQrnvtclawRPlsaselavgC-------r~gIciW~~s 170 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSSTCPTKLKSVSQRNVTCLAWRPLSASELAVGC-------RAGICIWSDS 170 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCCCCCceecchhhcceeEEEeccCCcceeeeee-------cceeEEEEcC
Confidence 346789999996666777765 45799986553 2223333467888888887765554543 5689999864
Q ss_pred CC----cEE--------EEEec--CCceEEEEEcCCeEEEEE----CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCC
Q 019349 84 TG----TAL--------RELNF--LTSILAVRLNKKRLVIVL----REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSL 145 (342)
Q Consensus 84 ~~----~~~--------~~~~~--~~~v~~i~~~~~~~~~~~----d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (342)
.- +.+ ..++. +.+|+++.++++...++. +..|.|||..++..+.-.. ....++.-+-++|
T Consensus 171 ~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~--~glgg~slLkwSP 248 (445)
T KOG2139|consen 171 RTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIP--KGLGGFSLLKWSP 248 (445)
T ss_pred cccccccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccc--cCCCceeeEEEcC
Confidence 21 111 11122 348999999999766654 6699999999886654432 2334566677888
Q ss_pred CccEEEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCee-----------
Q 019349 146 NACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATK----------- 214 (342)
Q Consensus 146 ~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~----------- 214 (342)
|+.++.++. -|+..++|+............-.+.|...+|+|+|++|+-++.... +++.+.-..+
T Consensus 249 dgd~lfaAt--~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp--~lysl~f~~~~~~~~~~~~~k 324 (445)
T KOG2139|consen 249 DGDVLFAAT--CDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSP--RLYSLTFDGEDSVFLRPQSIK 324 (445)
T ss_pred CCCEEEEec--ccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCCc--eEEEEeecCCCccccCcccce
Confidence 888888877 5899999965543322222223458999999999998777665433 3555432111
Q ss_pred ----EEEec-----cCc--CceeEEEEEEecCCCcccEEEEEeCCCc--------EEEEecCCCCCCCCCCCcccccccc
Q 019349 215 ----SYSFR-----RGT--YPSTIFSLSFGQSMQFQDILVATSSSGS--------LHVFSPGFAINQRRGGRTSSILGSI 275 (342)
Q Consensus 215 ----~~~~~-----~~~--~~~~v~~l~fs~d~~~~~~l~~~s~dg~--------i~vwd~~~~~~~~~~~~~~~~~~~~ 275 (342)
+..+. .+. -.+++.+|+|.|.|. +||+.-..+. |.+||.+...... -...++.++-
T Consensus 325 ~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGe---yLav~fKg~~~v~~~k~~i~~fdtr~sp~ve--ls~cg~i~ge 399 (445)
T KOG2139|consen 325 RVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGE---YLAVIFKGQSFVLLCKLHISRFDTRKSPPVE--LSYCGMIGGE 399 (445)
T ss_pred eeeeeccchhhhhhcCcccccCccceeeECCCCC---EEEEEEcCCchhhhhhhhhhhhcccccCceE--EEecccccCC
Confidence 11111 010 023578999999999 9998765433 5666654322111 0001111111
Q ss_pred ccccccccccccccceeeeccCCCccccEEEEEEeCCcEEEEEEecC
Q 019349 276 LPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSIN 322 (342)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~~~~~ 322 (342)
.|.. ..++| . ..++..|.++=+.|.+..|.++-+
T Consensus 400 ~P~~--IsF~p----------l-~n~g~lLsiaWsTGriq~ypl~f~ 433 (445)
T KOG2139|consen 400 YPAY--ISFGP----------L-KNEGRLLSIAWSTGRIQRYPLTFQ 433 (445)
T ss_pred CCce--EEeee----------c-ccCCcEEEEEeccCceEeeeeEEE
Confidence 1111 01111 1 133456666677999999998753
No 220
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.34 E-value=1.6e-10 Score=95.27 Aligned_cols=130 Identities=16% Similarity=0.214 Sum_probs=88.6
Q ss_pred cEEEEEEccC-CceeEEEec-ccCCeeEEEECCCCCEEEEEe--CCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEec
Q 019349 159 GSVLVYNVME-LHSHCEIDA-HQAPLAAIVLSSNGMYIATAS--EQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQ 234 (342)
Q Consensus 159 g~i~iwd~~~-~~~~~~~~~-h~~~v~~i~~s~dg~~lat~s--~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~ 234 (342)
|...+|.++. ..++..+.- ..++|.+++|+|+|+.+|... .+.. +.+||++ ++.+..+.. ..+..+.|||
T Consensus 37 ~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~-v~lyd~~-~~~i~~~~~----~~~n~i~wsP 110 (194)
T PF08662_consen 37 GEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAK-VTLYDVK-GKKIFSFGT----QPRNTISWSP 110 (194)
T ss_pred eeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcc-cEEEcCc-ccEeEeecC----CCceEEEECC
Confidence 4455665532 234444443 345799999999999876553 4555 6899996 777777742 3467899999
Q ss_pred CCCcccEEEEEeCC---CcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEEEEEEe-
Q 019349 235 SMQFQDILVATSSS---GSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITY- 310 (342)
Q Consensus 235 d~~~~~~l~~~s~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~- 310 (342)
+|+ +|++++.+ |.|.+||++..+.....+ .+......|+|++ .+++++..
T Consensus 111 ~G~---~l~~~g~~n~~G~l~~wd~~~~~~i~~~~---------~~~~t~~~WsPdG--------------r~~~ta~t~ 164 (194)
T PF08662_consen 111 DGR---FLVLAGFGNLNGDLEFWDVRKKKKISTFE---------HSDATDVEWSPDG--------------RYLATATTS 164 (194)
T ss_pred CCC---EEEEEEccCCCcEEEEEECCCCEEeeccc---------cCcEEEEEEcCCC--------------CEEEEEEec
Confidence 999 89988754 669999998655433211 1122345788877 66666654
Q ss_pred -----CCcEEEEEEe
Q 019349 311 -----NGYFVEYIFS 320 (342)
Q Consensus 311 -----dg~v~~~~~~ 320 (342)
|..+++|++.
T Consensus 165 ~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 165 PRLRVDNGFKIWSFQ 179 (194)
T ss_pred cceeccccEEEEEec
Confidence 7888899874
No 221
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.33 E-value=4.8e-09 Score=95.11 Aligned_cols=186 Identities=13% Similarity=0.114 Sum_probs=119.5
Q ss_pred EEcC-CcEEEEeCCCCcEEEEEeeC-CE-EEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEEEEEecCCceEEE
Q 019349 24 LSTK-DGFKIFDSSTGRLCYERAVG-AF-SIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAV 100 (342)
Q Consensus 24 ~g~~-~g~~v~d~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~i 100 (342)
+-.+ +.+.|.|..+.+.+.....+ .. ..+.+..+++++.+.+. |+.|.++|+.+++.+.++.......++
T Consensus 11 ~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~r-------dg~vsviD~~~~~~v~~i~~G~~~~~i 83 (369)
T PF02239_consen 11 VERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANR-------DGTVSVIDLATGKVVATIKVGGNPRGI 83 (369)
T ss_dssp EEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEET-------TSEEEEEETTSSSEEEEEE-SSEEEEE
T ss_pred EecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcC-------CCeEEEEECCcccEEEEEecCCCcceE
Confidence 3443 44799999998887766543 33 23445566777777654 789999999999999999988889999
Q ss_pred EEcCCe--EEEEE--CCeEEEEECCCCceeeEEeCCCCC-----ceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCce
Q 019349 101 RLNKKR--LVIVL--REKTYIYDANTLAILDTIDTVPNL-----KGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHS 171 (342)
Q Consensus 101 ~~~~~~--~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~ 171 (342)
++++++ ++++. .+.+.++|.++.+.++.+.+...+ ..+.++-.++....++++-. ..+.|.+.|....+.
T Consensus 84 ~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lk-d~~~I~vVdy~d~~~ 162 (369)
T PF02239_consen 84 AVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLK-DTGEIWVVDYSDPKN 162 (369)
T ss_dssp EE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEET-TTTEEEEEETTTSSC
T ss_pred EEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEc-cCCeEEEEEeccccc
Confidence 998764 44443 789999999999999988664322 23455554555554444433 468899989877654
Q ss_pred e--EEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEe
Q 019349 172 H--CEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSF 218 (342)
Q Consensus 172 ~--~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~ 218 (342)
+ ..+. .........|+|+|++++.+......+-++|.++++.+..+
T Consensus 163 ~~~~~i~-~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i 210 (369)
T PF02239_consen 163 LKVTTIK-VGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALI 210 (369)
T ss_dssp EEEEEEE---TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEE
T ss_pred cceeeec-ccccccccccCcccceeeecccccceeEEEeeccceEEEEe
Confidence 3 2333 34556778999999998776543334568999888776654
No 222
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.33 E-value=2.5e-10 Score=111.20 Aligned_cols=238 Identities=8% Similarity=0.078 Sum_probs=139.4
Q ss_pred CCCeEEEEECCCC-------cEEEEEe-cCCceEEEE--EcCCeEEEEE-CCeEEEEECCCC---ce----eeEEeCCCC
Q 019349 73 SPRRLCLFNTTTG-------TALRELN-FLTSILAVR--LNKKRLVIVL-REKTYIYDANTL---AI----LDTIDTVPN 134 (342)
Q Consensus 73 ~d~~i~iwd~~~~-------~~~~~~~-~~~~v~~i~--~~~~~~~~~~-d~~i~i~d~~~~---~~----~~~~~~~~~ 134 (342)
.|++|++||.+.- +...++. ..+.+..+. .+.+.+++++ ||.|++.++.-- +. .+....+ .
T Consensus 1069 ~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~-~ 1147 (1431)
T KOG1240|consen 1069 DDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLK-K 1147 (1431)
T ss_pred CCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeeccccc-C
Confidence 5999999998642 1223333 234555444 4666777777 899999988641 11 1111111 1
Q ss_pred CceEEE---EeeCCCccEEEEeCCCCccEEEEEEccCCceeEEEe--cccCCeeEEEECCCCCEEEEEeCCCcEEEEEEc
Q 019349 135 LKGLCA---FSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEID--AHQAPLAAIVLSSNGMYIATASEQGTIIRVFLV 209 (342)
Q Consensus 135 ~~~~~~---~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~--~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~ 209 (342)
...++. +........++++. ..+.|..||+++.....+++ ...+.|++++.+|.++++++|...|.++ +||+
T Consensus 1148 ~g~vv~m~a~~~~~~S~~lvy~T--~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~-lWDL 1224 (1431)
T KOG1240|consen 1148 DGVVVSMHAFTAIVQSHVLVYAT--DLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLV-LWDL 1224 (1431)
T ss_pred CCceEEeecccccccceeEEEEE--eccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCceEE-EEEe
Confidence 112222 22222222566655 56889999998876655443 2346799999999999999999999864 9999
Q ss_pred CCCeeEEEeccCcCceeEEEEEEecC---CCcccEEEEEe--CCCcEEEEecCCCCCCCCCCCc--cccccccccccccc
Q 019349 210 SEATKSYSFRRGTYPSTIFSLSFGQS---MQFQDILVATS--SSGSLHVFSPGFAINQRRGGRT--SSILGSILPESVNE 282 (342)
Q Consensus 210 ~~~~~~~~~~~~~~~~~v~~l~fs~d---~~~~~~l~~~s--~dg~i~vwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 282 (342)
+-+.++..+..+. .+.+..|..+|- +. ..++++ ..+.|.+|++.++........+ ...+...+|.- .
T Consensus 1225 RF~~~i~sw~~P~-~~~i~~v~~~~~~~~~S---~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~--~ 1298 (1431)
T KOG1240|consen 1225 RFRVPILSWEHPA-RAPIRHVWLCPTYPQES---VSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSN--D 1298 (1431)
T ss_pred ecCceeecccCcc-cCCcceEEeeccCCCCc---eEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccc--c
Confidence 9999888875433 355666666543 33 455544 4778999999887432211000 00011111110 0
Q ss_pred cccccccceeeeccCCCccccEEEEEEeCCcEEEEEEecC
Q 019349 283 VLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSIN 322 (342)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~~~~~ 322 (342)
.-.| +.+..-.+.+.-++..++++++|+.|+.|+....
T Consensus 1299 ~~kp--~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p 1336 (1431)
T KOG1240|consen 1299 ARKP--DSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRP 1336 (1431)
T ss_pred CCCC--CcccceeeecccCCceeeecCCccceeeccCCCc
Confidence 0001 1111112222334568999999999999976543
No 223
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.33 E-value=1.2e-09 Score=101.97 Aligned_cols=177 Identities=15% Similarity=0.041 Sum_probs=112.2
Q ss_pred CCeEEEEECCCCcEEEEEecCCceEEEEEcCCeE--EEEE----CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCc
Q 019349 74 PRRLCLFNTTTGTALRELNFLTSILAVRLNKKRL--VIVL----REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNA 147 (342)
Q Consensus 74 d~~i~iwd~~~~~~~~~~~~~~~v~~i~~~~~~~--~~~~----d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (342)
..+|.+||........-......+.+..|+|+.. +.+. ...|++||+.+++... +..... ...+..++|++
T Consensus 183 ~~~l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g--~~~~~~~SpDG 259 (433)
T PRK04922 183 RYALQVADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRG--INGAPSFSPDG 259 (433)
T ss_pred eEEEEEECCCCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCC--CccCceECCCC
Confidence 3579999986544433334455788889988753 3333 2379999998875432 222111 22355677888
Q ss_pred cEEEEeCC-CCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCC-Cc-EEEEEEcCCCeeEEEeccCcCc
Q 019349 148 CFLAVPAS-TTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQ-GT-IIRVFLVSEATKSYSFRRGTYP 224 (342)
Q Consensus 148 ~~l~~~~~-~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~d-g~-~irlwd~~~~~~~~~~~~~~~~ 224 (342)
..+++... +.+..|.+||+.+++. ..+..|.......+|+|||++|+..+.. |. -|.++|+.+++.. .+... .
T Consensus 260 ~~l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~-~lt~~--g 335 (433)
T PRK04922 260 RRLALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAE-RLTFQ--G 335 (433)
T ss_pred CEEEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeE-EeecC--C
Confidence 77765432 1234799999988764 3455565556788999999999988753 33 1345677666532 22211 1
Q ss_pred eeEEEEEEecCCCcccEEEEEeCCC---cEEEEecCCCC
Q 019349 225 STIFSLSFGQSMQFQDILVATSSSG---SLHVFSPGFAI 260 (342)
Q Consensus 225 ~~v~~l~fs~d~~~~~~l~~~s~dg---~i~vwd~~~~~ 260 (342)
......+||||++ +|+..+.++ .|.+||+.++.
T Consensus 336 ~~~~~~~~SpDG~---~Ia~~~~~~~~~~I~v~d~~~g~ 371 (433)
T PRK04922 336 NYNARASVSPDGK---KIAMVHGSGGQYRIAVMDLSTGS 371 (433)
T ss_pred CCccCEEECCCCC---EEEEEECCCCceeEEEEECCCCC
Confidence 2244689999999 888765443 59999987654
No 224
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.32 E-value=2.1e-09 Score=100.27 Aligned_cols=214 Identities=14% Similarity=0.072 Sum_probs=133.0
Q ss_pred EEEEeCCCCcEE-EEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEEEEEecCCceEEEEEcCCe--
Q 019349 30 FKIFDSSTGRLC-YERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKR-- 106 (342)
Q Consensus 30 ~~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~i~~~~~~-- 106 (342)
+.+||.+..... ...+...+....+.++++.+++++... ....|.+||+.+++......++.......|+++.
T Consensus 186 l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~----~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~ 261 (433)
T PRK04922 186 LQVADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFER----GRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRR 261 (433)
T ss_pred EEEECCCCCCceEeecCCCccccccCCCCCCEEEEEecCC----CCcEEEEEECCCCCEEEeccCCCCccCceECCCCCE
Confidence 577887654322 222233455567778888888876421 2457999999888765443444555577888875
Q ss_pred EEEEE--CC--eEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccE--EEEEEccCCceeEEEecccC
Q 019349 107 LVIVL--RE--KTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGS--VLVYNVMELHSHCEIDAHQA 180 (342)
Q Consensus 107 ~~~~~--d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~--i~iwd~~~~~~~~~~~~h~~ 180 (342)
+++.. ++ .|++||+.+++.. .+..+.. .....+++|++..+++.+. .+|. |.++|+.+++.. .+..+..
T Consensus 262 l~~~~s~~g~~~Iy~~d~~~g~~~-~lt~~~~--~~~~~~~spDG~~l~f~sd-~~g~~~iy~~dl~~g~~~-~lt~~g~ 336 (433)
T PRK04922 262 LALTLSRDGNPEIYVMDLGSRQLT-RLTNHFG--IDTEPTWAPDGKSIYFTSD-RGGRPQIYRVAASGGSAE-RLTFQGN 336 (433)
T ss_pred EEEEEeCCCCceEEEEECCCCCeE-ECccCCC--CccceEECCCCCEEEEEEC-CCCCceEEEEECCCCCeE-EeecCCC
Confidence 33332 33 7999999887643 3322211 2234567788888887653 3444 666677666533 2333334
Q ss_pred CeeEEEECCCCCEEEEEeCCCc--EEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCC---CcEEEEe
Q 019349 181 PLAAIVLSSNGMYIATASEQGT--IIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSS---GSLHVFS 255 (342)
Q Consensus 181 ~v~~i~~s~dg~~lat~s~dg~--~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~d---g~i~vwd 255 (342)
.....+|||||++|+..+.++. -|.+||+.+++.. .+..+. .....+|+||++ +|+..+.+ +.|++++
T Consensus 337 ~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~~~---~~~~p~~spdG~---~i~~~s~~~g~~~L~~~~ 409 (433)
T PRK04922 337 YNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLTPGS---LDESPSFAPNGS---MVLYATREGGRGVLAAVS 409 (433)
T ss_pred CccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECCCCC---CCCCceECCCCC---EEEEEEecCCceEEEEEE
Confidence 4557899999999988765431 3579999887654 343221 234578999999 77777653 3577777
Q ss_pred cCCC
Q 019349 256 PGFA 259 (342)
Q Consensus 256 ~~~~ 259 (342)
++..
T Consensus 410 ~~g~ 413 (433)
T PRK04922 410 TDGR 413 (433)
T ss_pred CCCC
Confidence 7543
No 225
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.32 E-value=8.2e-12 Score=111.96 Aligned_cols=139 Identities=14% Similarity=0.178 Sum_probs=100.5
Q ss_pred eeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCc
Q 019349 171 SHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGS 250 (342)
Q Consensus 171 ~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~ 250 (342)
....+.+|.+-|+|+.|+.||.+|++||+|-++| |||....+++..+..+ |.+.|.++.|-|-.. ..++++|+.|..
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~i-vWd~~~~KllhsI~Tg-HtaNIFsvKFvP~tn-nriv~sgAgDk~ 118 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLI-VWDPFEYKLLHSISTG-HTANIFSVKFVPYTN-NRIVLSGAGDKL 118 (758)
T ss_pred hhhhhccccceecceeecCCCCEEeecCCcceEE-eecchhcceeeeeecc-cccceeEEeeeccCC-CeEEEeccCcce
Confidence 3456789999999999999999999999998876 9999988998888765 567899999987421 128999999999
Q ss_pred EEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccc-cEEEEEEeCCcEEEEEEecCC
Q 019349 251 LHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKR-ASVSVITYNGYFVEYIFSINN 323 (342)
Q Consensus 251 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~v~~~~~~~~~ 323 (342)
|++||+...++..- ..+ +.....+|.-...++. .++..+.+ +.+.++++||.++-|++.+.+
T Consensus 119 i~lfdl~~~~~~~~---d~~------~~~~~~~~~cht~rVK--ria~~p~~PhtfwsasEDGtirQyDiREph 181 (758)
T KOG1310|consen 119 IKLFDLDSSKEGGM---DHG------MEETTRCWSCHTDRVK--RIATAPNGPHTFWSASEDGTIRQYDIREPH 181 (758)
T ss_pred EEEEeccccccccc---ccC------ccchhhhhhhhhhhhh--heecCCCCCceEEEecCCcceeeecccCCc
Confidence 99999986543110 000 1111234554333332 22222222 689999999999999987644
No 226
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.32 E-value=5.6e-11 Score=106.70 Aligned_cols=223 Identities=12% Similarity=0.096 Sum_probs=144.8
Q ss_pred cCCceEEEEEcCCeEEEEE---CCeEEEEECCCCceeeEEeCCCCCceEEEE--eeCCCccEEEEeCCCCccEEEEEEcc
Q 019349 93 FLTSILAVRLNKKRLVIVL---REKTYIYDANTLAILDTIDTVPNLKGLCAF--SPSLNACFLAVPASTTKGSVLVYNVM 167 (342)
Q Consensus 93 ~~~~v~~i~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~g~i~iwd~~ 167 (342)
+.+=|.++.|+.++.++++ |-.+.|||.-..|+++.+.+.. ...+.++ -|..+...++++. .|..|+++|+.
T Consensus 49 H~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgH-taNIFsvKFvP~tnnriv~sgA--gDk~i~lfdl~ 125 (758)
T KOG1310|consen 49 HTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGH-TANIFSVKFVPYTNNRIVLSGA--GDKLIKLFDLD 125 (758)
T ss_pred ccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeeccc-ccceeEEeeeccCCCeEEEecc--CcceEEEEecc
Confidence 3456899999988877766 4489999999889999987643 3345544 4444556666655 68999999997
Q ss_pred CC----------ceeEEEecccCCeeEEEECCCC-CEEEEEeCCCcEEEEEEcCCCee-------EEEecc-CcCceeEE
Q 019349 168 EL----------HSHCEIDAHQAPLAAIVLSSNG-MYIATASEQGTIIRVFLVSEATK-------SYSFRR-GTYPSTIF 228 (342)
Q Consensus 168 ~~----------~~~~~~~~h~~~v~~i~~s~dg-~~lat~s~dg~~irlwd~~~~~~-------~~~~~~-~~~~~~v~ 228 (342)
.. +....+..|...|..|+..|++ +.+-++|+||+ ||-+|++.... ...+.. ....-+..
T Consensus 126 ~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGt-irQyDiREph~c~p~~~~~~~l~ny~~~lielk 204 (758)
T KOG1310|consen 126 SSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGT-IRQYDIREPHVCNPDEDCPSILVNYNPQLIELK 204 (758)
T ss_pred cccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcc-eeeecccCCccCCccccccHHHHHhchhhheee
Confidence 42 2445567899999999999999 88999999998 59999986421 000000 00112478
Q ss_pred EEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCC--------CCCccccccccccccccccccccc----cceeeecc
Q 019349 229 SLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRR--------GGRTSSILGSILPESVNEVLDPAD----HHVLRNAF 296 (342)
Q Consensus 229 ~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 296 (342)
|+..+|... ++||+|+.|--.++||.+.-.+.-. +....+.+..+.|.+. -++.+ -....+.+
T Consensus 205 ~ltisp~rp--~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hl---kn~~gn~~~~~~~~t~v 279 (758)
T KOG1310|consen 205 CLTISPSRP--YYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHL---KNSQGNLDRYITCCTYV 279 (758)
T ss_pred eeeecCCCC--ceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccc---cCcccccccceeeeEEE
Confidence 899999887 4999999999999999654322110 0111112222333221 11111 11123566
Q ss_pred CCCccccEEEEEEeCCcEEEEEEecCCC
Q 019349 297 PAGVKRASVSVITYNGYFVEYIFSINNC 324 (342)
Q Consensus 297 ~~~~~~~~l~~~~~dg~v~~~~~~~~~~ 324 (342)
.|.|.+.-|++.=+--.||.|++...++
T Consensus 280 tfnpNGtElLvs~~gEhVYlfdvn~~~~ 307 (758)
T KOG1310|consen 280 TFNPNGTELLVSWGGEHVYLFDVNEDKS 307 (758)
T ss_pred EECCCCcEEEEeeCCeEEEEEeecCCCC
Confidence 7777666665555555788888765543
No 227
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.32 E-value=6.5e-11 Score=104.85 Aligned_cols=285 Identities=13% Similarity=0.078 Sum_probs=177.7
Q ss_pred CCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcEEEEEee---CCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEE
Q 019349 3 NQSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAV---GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLC 78 (342)
Q Consensus 3 ~~~~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~ 78 (342)
+..+.+-|+.|.|+..|+.|++|+++- +.+||+..++....... ..+.-..+.+.+...-+++.+ .|+.++
T Consensus 138 L~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s-----~dgqvr 212 (559)
T KOG1334|consen 138 LNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSS-----RDGQVR 212 (559)
T ss_pred ccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceecc-----ccCcee
Confidence 457889999999999999999999886 59999988866554433 333334555554333333322 488888
Q ss_pred EEEC-CCCcEEE---EEecCCceEEEEEcC---CeEEEEE-CCeEEEEECCCCceeeEEeCCC--C--CceEEEEeeCCC
Q 019349 79 LFNT-TTGTALR---ELNFLTSILAVRLNK---KRLVIVL-REKTYIYDANTLAILDTIDTVP--N--LKGLCAFSPSLN 146 (342)
Q Consensus 79 iwd~-~~~~~~~---~~~~~~~v~~i~~~~---~~~~~~~-d~~i~i~d~~~~~~~~~~~~~~--~--~~~~~~~~~~~~ 146 (342)
+=.+ .++.+.. ...+.++|..+++.| ..++.++ |+.+.-+|++....-..+.... . ...+..++.+|.
T Consensus 213 ~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~ 292 (559)
T KOG1334|consen 213 VSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPR 292 (559)
T ss_pred eeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCC
Confidence 7665 3444332 234566777777644 4555555 7788889998764333332211 1 246677777776
Q ss_pred cc-EEEEeCCCCccEEEEEEccCCce------eEEEe------cccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCC--
Q 019349 147 AC-FLAVPASTTKGSVLVYNVMELHS------HCEID------AHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSE-- 211 (342)
Q Consensus 147 ~~-~l~~~~~~~~g~i~iwd~~~~~~------~~~~~------~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~-- 211 (342)
+. .+|++| .|..+++||.+.... +..+- ...-.|+|++|+.++.-|.++-.|-. |.+|.-.-
T Consensus 293 nt~~faVgG--~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~-IYLF~~~~~~ 369 (559)
T KOG1334|consen 293 NTNEFAVGG--SDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDED-IYLFNKSMGD 369 (559)
T ss_pred CccccccCC--hhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccc-eEEecccccc
Confidence 65 566666 689999999864321 22221 12246999999987776666666654 56884322
Q ss_pred C----------eeEEE-eccCcCceeEEEEEE-ecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCcccccccccccc
Q 019349 212 A----------TKSYS-FRRGTYPSTIFSLSF-GQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPES 279 (342)
Q Consensus 212 ~----------~~~~~-~~~~~~~~~v~~l~f-s~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 279 (342)
| ..++. ++.+.....|..+-| -|... |+++||+=|.|.||+=.+.+..+- +..+
T Consensus 370 G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsE---yVvSGSDCGhIFiW~K~t~eii~~----------MegD- 435 (559)
T KOG1334|consen 370 GSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSE---YVVSGSDCGHIFIWDKKTGEIIRF----------MEGD- 435 (559)
T ss_pred CCCCCCCcchhhccchhhcccccccccceeeeccCccc---eEEecCccceEEEEecchhHHHHH----------hhcc-
Confidence 2 11222 333323344777876 46666 999999999999999655543221 1111
Q ss_pred ccccccccccceeeeccCCCccccEEEEEEeCCcEEEEEE
Q 019349 280 VNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIF 319 (342)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~~ 319 (342)
. ..+..+...|-.+.|++.+-|-.|+||.-
T Consensus 436 --------r--~VVNCLEpHP~~PvLAsSGid~DVKIWTP 465 (559)
T KOG1334|consen 436 --------R--HVVNCLEPHPHLPVLASSGIDHDVKIWTP 465 (559)
T ss_pred --------c--ceEeccCCCCCCchhhccCCccceeeecC
Confidence 1 11222222344567999999999999963
No 228
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.31 E-value=2.5e-08 Score=90.22 Aligned_cols=238 Identities=14% Similarity=0.180 Sum_probs=147.5
Q ss_pred CCeEEEEEcCCCCEEEEEcCC-----cEEEEeCCC--CcEEE--EEe--eCCEEEEEEcCCCCeEEEEcCCCCCCCCCCe
Q 019349 8 YPVFFVSFNQDNSGFALSTKD-----GFKIFDSST--GRLCY--ERA--VGAFSIVEMLYSSSLLAIVGAGEQPSLSPRR 76 (342)
Q Consensus 8 ~~V~~l~fs~d~~~la~g~~~-----g~~v~d~~~--~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~ 76 (342)
.....++++|++++|.+..+. ++..|.++. +++.. ... ...-..+.+..+..+++++.- ..+.
T Consensus 37 ~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany------~~g~ 110 (345)
T PF10282_consen 37 ENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANY------GGGS 110 (345)
T ss_dssp SSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEET------TTTE
T ss_pred CCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEc------cCCe
Confidence 345678999999999887653 366776654 44432 222 233345677777788877764 4789
Q ss_pred EEEEECCC-CcEEEE---Eec-----------CCceEEEEEcCCe--EEEEE--CCeEEEEECCCCc--e--eeEEeCCC
Q 019349 77 LCLFNTTT-GTALRE---LNF-----------LTSILAVRLNKKR--LVIVL--REKTYIYDANTLA--I--LDTIDTVP 133 (342)
Q Consensus 77 i~iwd~~~-~~~~~~---~~~-----------~~~v~~i~~~~~~--~~~~~--d~~i~i~d~~~~~--~--~~~~~~~~ 133 (342)
|.++++.. |..... +.+ .....++.++|+. ++++. .+.|++|++.... + ...+..+.
T Consensus 111 v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~ 190 (345)
T PF10282_consen 111 VSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPP 190 (345)
T ss_dssp EEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECST
T ss_pred EEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeecccccc
Confidence 99999976 333222 211 2356788898873 44444 5699999997654 3 23333322
Q ss_pred CCceEEEEeeCCCccEEEEeCCCCccEEEEEEcc--CCc--eeEEEecc------cCCeeEEEECCCCCEEEEEeCCCcE
Q 019349 134 NLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVM--ELH--SHCEIDAH------QAPLAAIVLSSNGMYIATASEQGTI 203 (342)
Q Consensus 134 ~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~--~~~--~~~~~~~h------~~~v~~i~~s~dg~~lat~s~dg~~ 203 (342)
..+-.-+.++|++.++.+... .+++|.++++. +++ .+..+... ......|+++|||++|.++......
T Consensus 191 -G~GPRh~~f~pdg~~~Yv~~e-~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~s 268 (345)
T PF10282_consen 191 -GSGPRHLAFSPDGKYAYVVNE-LSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNS 268 (345)
T ss_dssp -TSSEEEEEE-TTSSEEEEEET-TTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTE
T ss_pred -CCCCcEEEEcCCcCEEEEecC-CCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCE
Confidence 234445566677777766654 68999999988 432 22333211 1257889999999998887765555
Q ss_pred EEEEEcC--CCe--eEEEeccCcCceeEEEEEEecCCCcccEEEEEe-CCCcEEEEecCC
Q 019349 204 IRVFLVS--EAT--KSYSFRRGTYPSTIFSLSFGQSMQFQDILVATS-SSGSLHVFSPGF 258 (342)
Q Consensus 204 irlwd~~--~~~--~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s-~dg~i~vwd~~~ 258 (342)
|-+|++. +|+ .+..+..+ ....+.++|+|+++ +|+++. .+++|.+|+++.
T Consensus 269 I~vf~~d~~~g~l~~~~~~~~~--G~~Pr~~~~s~~g~---~l~Va~~~s~~v~vf~~d~ 323 (345)
T PF10282_consen 269 ISVFDLDPATGTLTLVQTVPTG--GKFPRHFAFSPDGR---YLYVANQDSNTVSVFDIDP 323 (345)
T ss_dssp EEEEEECTTTTTEEEEEEEEES--SSSEEEEEE-TTSS---EEEEEETTTTEEEEEEEET
T ss_pred EEEEEEecCCCceEEEEEEeCC--CCCccEEEEeCCCC---EEEEEecCCCeEEEEEEeC
Confidence 6799993 343 33333321 22368899999999 888776 567899998853
No 229
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.31 E-value=1.7e-11 Score=109.62 Aligned_cols=155 Identities=14% Similarity=0.201 Sum_probs=99.9
Q ss_pred CCeEEEEECCCCceeeEE--eCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCC--------------c-----
Q 019349 112 REKTYIYDANTLAILDTI--DTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMEL--------------H----- 170 (342)
Q Consensus 112 d~~i~i~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~--------------~----- 170 (342)
.+.+.+.|....+..+.+ ....+...+.++.+-+....++.... .+|.+.+||.... .
T Consensus 194 tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~-~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~ 272 (636)
T KOG2394|consen 194 TGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAH-ASGNLYLYDKEIVCGATAPSYQALKDGDQFAIL 272 (636)
T ss_pred cCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEE-ecCceEEeeccccccCCCCcccccCCCCeeEEe
Confidence 677777776442211111 12223345566665443322322333 4788888875211 0
Q ss_pred ---------eeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccE
Q 019349 171 ---------SHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDI 241 (342)
Q Consensus 171 ---------~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~ 241 (342)
++..+.--+..|+..+|||||++||+-|.||. +||||..+.+++..++. .-+-..|++||||++ |
T Consensus 273 t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGf-LRvF~fdt~eLlg~mkS--YFGGLLCvcWSPDGK---y 346 (636)
T KOG2394|consen 273 TSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGF-LRIFDFDTQELLGVMKS--YFGGLLCVCWSPDGK---Y 346 (636)
T ss_pred eeeccccCCccceeEeccccccceeEcCCCceEEEEecCce-EEEeeccHHHHHHHHHh--hccceEEEEEcCCcc---E
Confidence 11112222357889999999999999999997 59999988776654431 234589999999999 9
Q ss_pred EEEEeCCCcEEEEecCCCCCCCCCCCcccccc
Q 019349 242 LVATSSSGSLHVFSPGFAINQRRGGRTSSILG 273 (342)
Q Consensus 242 l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~ 273 (342)
|++|++|.-|.||.+...+...+.+.+.+++.
T Consensus 347 IvtGGEDDLVtVwSf~erRVVARGqGHkSWVs 378 (636)
T KOG2394|consen 347 IVTGGEDDLVTVWSFEERRVVARGQGHKSWVS 378 (636)
T ss_pred EEecCCcceEEEEEeccceEEEecccccccee
Confidence 99999999999999987766555444444443
No 230
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.30 E-value=2.3e-09 Score=99.78 Aligned_cols=175 Identities=17% Similarity=0.074 Sum_probs=109.0
Q ss_pred CCeEEEEECCCCcEEEEEecCCceEEEEEcCCeE--EEEE--C--CeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCc
Q 019349 74 PRRLCLFNTTTGTALRELNFLTSILAVRLNKKRL--VIVL--R--EKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNA 147 (342)
Q Consensus 74 d~~i~iwd~~~~~~~~~~~~~~~v~~i~~~~~~~--~~~~--d--~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (342)
...|.+||...............+.+.+|+|++. +..+ + ..|++||+.+++... +.... ....+..++||+
T Consensus 175 ~~~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~--g~~~~~~~SPDG 251 (427)
T PRK02889 175 RYQLQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFK--GSNSAPAWSPDG 251 (427)
T ss_pred ccEEEEECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCC--CCccceEECCCC
Confidence 3568888874433333334456788899998763 3333 2 369999998886543 22111 123456778888
Q ss_pred cEEEEeCCCCccEEEEEE--ccCCceeEEEecccCCeeEEEECCCCCEEEEEeCC-CcEEEEEEc--CCCeeEEEeccCc
Q 019349 148 CFLAVPASTTKGSVLVYN--VMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQ-GTIIRVFLV--SEATKSYSFRRGT 222 (342)
Q Consensus 148 ~~l~~~~~~~~g~i~iwd--~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~d-g~~irlwd~--~~~~~~~~~~~~~ 222 (342)
..|++... .+|...||. +..+. ...+..|........|+|||+.|+..+.. |. ..+|.+ .+++. ..+...
T Consensus 252 ~~la~~~~-~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~-~~Iy~~~~~~g~~-~~lt~~- 326 (427)
T PRK02889 252 RTLAVALS-RDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGA-PQIYRMPASGGAA-QRVTFT- 326 (427)
T ss_pred CEEEEEEc-cCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCC-cEEEEEECCCCce-EEEecC-
Confidence 88876543 466656654 44443 44555566566778999999999877754 44 356655 44432 222111
Q ss_pred CceeEEEEEEecCCCcccEEEEEeCCC---cEEEEecCCCC
Q 019349 223 YPSTIFSLSFGQSMQFQDILVATSSSG---SLHVFSPGFAI 260 (342)
Q Consensus 223 ~~~~v~~l~fs~d~~~~~~l~~~s~dg---~i~vwd~~~~~ 260 (342)
.......+|||||+ +|+..+.++ .|.+||+.++.
T Consensus 327 -g~~~~~~~~SpDG~---~Ia~~s~~~g~~~I~v~d~~~g~ 363 (427)
T PRK02889 327 -GSYNTSPRISPDGK---LLAYISRVGGAFKLYVQDLATGQ 363 (427)
T ss_pred -CCCcCceEECCCCC---EEEEEEccCCcEEEEEEECCCCC
Confidence 11234578999999 888777654 59999987764
No 231
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.30 E-value=4.9e-09 Score=88.56 Aligned_cols=154 Identities=12% Similarity=0.178 Sum_probs=117.6
Q ss_pred CCCeEEEEEcCCCCEEEEEcCCcEEEEeCCC-CcEEEEEee--CCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECC
Q 019349 7 SYPVFFVSFNQDNSGFALSTKDGFKIFDSST-GRLCYERAV--GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTT 83 (342)
Q Consensus 7 ~~~V~~l~fs~d~~~la~g~~~g~~v~d~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~ 83 (342)
..+|.++.+.+| .|++..++.+.||...+ -++++..+. .+-+..++.+..+..+++--| ...+.|+|-|+.
T Consensus 94 ~~~I~~V~l~r~--riVvvl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg----~k~GqvQi~dL~ 167 (346)
T KOG2111|consen 94 NSEIKAVKLRRD--RIVVVLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPG----FKTGQVQIVDLA 167 (346)
T ss_pred ccceeeEEEcCC--eEEEEecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCC----CccceEEEEEhh
Confidence 457788888765 58888999999999763 355444332 234455566655544444322 357999999987
Q ss_pred CCcE---EEEEecCCceEEEEEcCCeEEEEE---CC-eEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCC
Q 019349 84 TGTA---LRELNFLTSILAVRLNKKRLVIVL---RE-KTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPAST 156 (342)
Q Consensus 84 ~~~~---~~~~~~~~~v~~i~~~~~~~~~~~---d~-~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 156 (342)
..+. ..-..|.+.|.+++++.++..+|+ .| -|+|||..++.++.+++.......+++++++|+..+||+++
T Consensus 168 ~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsS-- 245 (346)
T KOG2111|consen 168 STKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSS-- 245 (346)
T ss_pred hcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEc--
Confidence 6554 444457789999999999888877 34 68999999999999999888888999999999999999988
Q ss_pred CccEEEEEEccC
Q 019349 157 TKGSVLVYNVME 168 (342)
Q Consensus 157 ~~g~i~iwd~~~ 168 (342)
..|+++|+.++.
T Consensus 246 dKgTlHiF~l~~ 257 (346)
T KOG2111|consen 246 DKGTLHIFSLRD 257 (346)
T ss_pred CCCeEEEEEeec
Confidence 689999998864
No 232
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.30 E-value=7.2e-09 Score=93.63 Aligned_cols=276 Identities=13% Similarity=0.151 Sum_probs=161.4
Q ss_pred CCeEEEEEcCCCCEEEEEcCCcEEEEeCCCCcEEEEEeeCCEEEEEEcCCCCeEEEE-----cCCCCCCCCCCeEEEEEC
Q 019349 8 YPVFFVSFNQDNSGFALSTKDGFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIV-----GAGEQPSLSPRRLCLFNT 82 (342)
Q Consensus 8 ~~V~~l~fs~d~~~la~g~~~g~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~g~~~~~~d~~i~iwd~ 82 (342)
-+.+..+++++|+++|.+.++-++|++..++..+.+........+.+.+-.+++.+- -...++ ..-.+++|+.
T Consensus 35 ~~~~v~~~S~~G~lfA~~~~~~v~i~~~~~~~~~lt~~~~~~~~L~fSP~g~yL~T~e~~~i~~~~~~--~~pn~~v~~v 112 (566)
T KOG2315|consen 35 RPCNVFAYSNNGRLFAYSDNQVVKVFEIATLKVVLCVELKKTYDLLFSPKGNYLLTWEPWAIYGPKNA--SNPNVLVYNV 112 (566)
T ss_pred CcceeEEEcCCCcEEEEEcCCeEEEEEccCCcEEEEeccceeeeeeecccccccccccccccccCCCC--CCCceeeeee
Confidence 347888999999999999999999999888865544433333334444444444311 111111 1245789999
Q ss_pred CCCcEEEEEecCC-ceEEEEEcCCeEEEEE--CCeEEEEECCCCcee-eEEeCCCCCceEEEEeeCCCccEEEEe--CCC
Q 019349 83 TTGTALRELNFLT-SILAVRLNKKRLVIVL--REKTYIYDANTLAIL-DTIDTVPNLKGLCAFSPSLNACFLAVP--AST 156 (342)
Q Consensus 83 ~~~~~~~~~~~~~-~v~~i~~~~~~~~~~~--d~~i~i~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~ 156 (342)
+++.....+.... .-....|+.+..+.+- .+.+++|++.+.+.+ +.+. ........+++.|....+|+= +..
T Consensus 113 et~~~~s~~q~k~Q~~W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~kl~--~~~i~~f~lSpgp~~~~vAvyvPe~k 190 (566)
T KOG2315|consen 113 ETGVQRSQIQKKMQNGWVPQFSIDESLAARLVSNEVQFYDLGSFKTIQHKLS--VSGITMLSLSPGPEPPFVAVYVPEKK 190 (566)
T ss_pred ccceehhheehhhhcCcccccccchhhhhhhhcceEEEEecCCccceeeeee--ccceeeEEecCCCCCceEEEEccCCC
Confidence 9966665555433 2256777777665554 788999988764322 2221 112233334443333333321 000
Q ss_pred -CccEEEEE---------------------------------------------------------EccCCceeEEEecc
Q 019349 157 -TKGSVLVY---------------------------------------------------------NVMELHSHCEIDAH 178 (342)
Q Consensus 157 -~~g~i~iw---------------------------------------------------------d~~~~~~~~~~~~h 178 (342)
.-+.|+|| ++....+...+ .-
T Consensus 191 GaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L-~k 269 (566)
T KOG2315|consen 191 GAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPL-LK 269 (566)
T ss_pred CCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEec-CC
Confidence 11223332 22211111111 12
Q ss_pred cCCeeEEEECCCCCEEEEEe--CCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCC---CcEEE
Q 019349 179 QAPLAAIVLSSNGMYIATAS--EQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSS---GSLHV 253 (342)
Q Consensus 179 ~~~v~~i~~s~dg~~lat~s--~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~d---g~i~v 253 (342)
.+||.++.|+|+|+.++..- .=.+ +-+||++ +..+..|..+ +=+++-|+|.|+ +|+.++-+ |.|-|
T Consensus 270 ~GPVhdv~W~~s~~EF~VvyGfMPAk-vtifnlr-~~~v~df~eg----pRN~~~fnp~g~---ii~lAGFGNL~G~mEv 340 (566)
T KOG2315|consen 270 EGPVHDVTWSPSGREFAVVYGFMPAK-VTIFNLR-GKPVFDFPEG----PRNTAFFNPHGN---IILLAGFGNLPGDMEV 340 (566)
T ss_pred CCCceEEEECCCCCEEEEEEecccce-EEEEcCC-CCEeEeCCCC----CccceEECCCCC---EEEEeecCCCCCceEE
Confidence 68999999999998776653 2233 4689985 7888888544 346788999998 88887765 78999
Q ss_pred EecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEEEEEEe------CCcEEEEEEe
Q 019349 254 FSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITY------NGYFVEYIFS 320 (342)
Q Consensus 254 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------dg~v~~~~~~ 320 (342)
||+...+...+. .-+....+-|+|++ .++++++. |..++||.++
T Consensus 341 wDv~n~K~i~~~---------~a~~tt~~eW~PdG--------------e~flTATTaPRlrvdNg~Kiwhyt 390 (566)
T KOG2315|consen 341 WDVPNRKLIAKF---------KAANTTVFEWSPDG--------------EYFLTATTAPRLRVDNGIKIWHYT 390 (566)
T ss_pred Eeccchhhcccc---------ccCCceEEEEcCCC--------------cEEEEEeccccEEecCCeEEEEec
Confidence 999875542211 11233456888887 44444432 6667777764
No 233
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.30 E-value=4.4e-10 Score=95.73 Aligned_cols=240 Identities=13% Similarity=0.221 Sum_probs=142.7
Q ss_pred CCeEEEEEcCCCCEEEEEcCCc-EEEEeCCC---CcEE----EEEee------------CCEEEEEEcCCCCe-EEEEcC
Q 019349 8 YPVFFVSFNQDNSGFALSTKDG-FKIFDSST---GRLC----YERAV------------GAFSIVEMLYSSSL-LAIVGA 66 (342)
Q Consensus 8 ~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~---~~~~----~~~~~------------~~~~~~~~~~~~~~-~~~~~~ 66 (342)
.-|.++.|+..|.+||+|..+| +.+|.-+. ++.. +..|. ..+..+.++...+. ..++++
T Consensus 26 diis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlst 105 (433)
T KOG1354|consen 26 DIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLST 105 (433)
T ss_pred cceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEec
Confidence 4588999999999999999988 56664222 2111 11111 13334555555443 234444
Q ss_pred CCCCCCCCCeEEEEECCCCcE-E--------------EEEe----------------------cCCceEEEEEcCCeEE-
Q 019349 67 GEQPSLSPRRLCLFNTTTGTA-L--------------RELN----------------------FLTSILAVRLNKKRLV- 108 (342)
Q Consensus 67 g~~~~~~d~~i~iwd~~~~~~-~--------------~~~~----------------------~~~~v~~i~~~~~~~~- 108 (342)
.|++|++|.+..... . .+++ ++-.|.+|.++.|.-.
T Consensus 106 ------NdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~ 179 (433)
T KOG1354|consen 106 ------NDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETF 179 (433)
T ss_pred ------CCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceE
Confidence 599999999753211 0 0000 0114677777766533
Q ss_pred EEECC-eEEEEECCCC-ceeeEEeCCCCC-----ceEEEEeeCCCc-cEEEEeCCCCccEEEEEEccCCce----eEEEe
Q 019349 109 IVLRE-KTYIYDANTL-AILDTIDTVPNL-----KGLCAFSPSLNA-CFLAVPASTTKGSVLVYNVMELHS----HCEID 176 (342)
Q Consensus 109 ~~~d~-~i~i~d~~~~-~~~~~~~~~~~~-----~~~~~~~~~~~~-~~l~~~~~~~~g~i~iwd~~~~~~----~~~~~ 176 (342)
+..|+ +|.+|+++-. +....++..+.. .-+.+.-++|.. ..+++++ ..|+|++.|++.... ...+.
T Consensus 180 lSADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSS--SKGtIrLcDmR~~aLCd~hsKlfE 257 (433)
T KOG1354|consen 180 LSADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSS--SKGTIRLCDMRQSALCDAHSKLFE 257 (433)
T ss_pred eeccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEec--CCCcEEEeechhhhhhcchhhhhc
Confidence 33344 9999999632 333333322221 112333344432 3556666 479999999984421 11111
Q ss_pred ------------cccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcC-CCeeEEEeccCcC----------cee---EEEE
Q 019349 177 ------------AHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVS-EATKSYSFRRGTY----------PST---IFSL 230 (342)
Q Consensus 177 ------------~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~-~~~~~~~~~~~~~----------~~~---v~~l 230 (342)
+--+.|..+.|+++|+++++-+-- + +++||+. ..+.+..++-+.. ... -..+
T Consensus 258 epedp~~rsffseiIsSISDvKFs~sGryilsRDyl-t-vk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec 335 (433)
T KOG1354|consen 258 EPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYL-T-VKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFEC 335 (433)
T ss_pred cccCCcchhhHHHHhhhhhceEEccCCcEEEEeccc-e-eEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEE
Confidence 112458889999999999987643 4 6999994 4555555432211 001 2457
Q ss_pred EEecCCCcccEEEEEeCCCcEEEEecCCCC
Q 019349 231 SFGQSMQFQDILVATSSSGSLHVFSPGFAI 260 (342)
Q Consensus 231 ~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~ 260 (342)
+|+-++. ++++||-.+-+++|++..+.
T Consensus 336 ~~sg~~~---~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 336 SWSGNDS---YVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred EEcCCcc---eEecccccceEEEecCCCCc
Confidence 8999998 99999999999999976554
No 234
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.29 E-value=4.5e-10 Score=97.18 Aligned_cols=163 Identities=9% Similarity=0.118 Sum_probs=123.5
Q ss_pred cCCceEEEEEcCCeEEEEE---CCeEEEEECCC------CceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEE
Q 019349 93 FLTSILAVRLNKKRLVIVL---REKTYIYDANT------LAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLV 163 (342)
Q Consensus 93 ~~~~v~~i~~~~~~~~~~~---d~~i~i~d~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~i 163 (342)
+.+-|.++.|+.+...+++ |..+++|++.. .+++.. ..+++...+.++.++..+.++.+++ .+|+|..
T Consensus 55 H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~-~~~~H~SNIF~L~F~~~N~~~~SG~--~~~~VI~ 131 (609)
T KOG4227|consen 55 HTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGV-MEHPHRSNIFSLEFDLENRFLYSGE--RWGTVIK 131 (609)
T ss_pred hccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCcee-ccCccccceEEEEEccCCeeEecCC--CcceeEe
Confidence 3456888999887776666 45899999953 345543 3455667899999988777777776 6899999
Q ss_pred EEccCCceeEEEec--ccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCe-eEEEeccCcCceeEEEEEEecCCCccc
Q 019349 164 YNVMELHSHCEIDA--HQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEAT-KSYSFRRGTYPSTIFSLSFGQSMQFQD 240 (342)
Q Consensus 164 wd~~~~~~~~~~~~--h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~-~~~~~~~~~~~~~v~~l~fs~d~~~~~ 240 (342)
.|+++.+.+..+.. ..+.|..+..+|-.+.|++.+.++.+ .+||.+..+ .+..+-....+...+++-|+|... .
T Consensus 132 HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V-~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P--~ 208 (609)
T KOG4227|consen 132 HDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLV-SFIDNRDRQNPISLVLPANSGKNFYTAEFHPETP--A 208 (609)
T ss_pred eecccceeeeeecccCcccceeecccCCCCceEEEEecCceE-EEEeccCCCCCCceeeecCCCccceeeeecCCCc--e
Confidence 99999887766642 23489999999999999999999975 699998765 322222222344578899999876 3
Q ss_pred EEEEEeCCCcEEEEecCCCCC
Q 019349 241 ILVATSSSGSLHVFSPGFAIN 261 (342)
Q Consensus 241 ~l~~~s~dg~i~vwd~~~~~~ 261 (342)
+|++.+..+-+-+||++.+..
T Consensus 209 Li~~~~~~~G~~~~D~R~~~~ 229 (609)
T KOG4227|consen 209 LILVNSETGGPNVFDRRMQAR 229 (609)
T ss_pred eEEeccccCCCCceeeccccc
Confidence 889999999999999987653
No 235
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.28 E-value=1.2e-10 Score=98.30 Aligned_cols=157 Identities=10% Similarity=0.097 Sum_probs=118.9
Q ss_pred ceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCc---eeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCC
Q 019349 136 KGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELH---SHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEA 212 (342)
Q Consensus 136 ~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~---~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~ 212 (342)
..+.+.++++|+..+|.+- ....|.||.....+ ..++++.|...|+.|+|+|..+.|+|++.|..- .||....+
T Consensus 11 ~pitchAwn~drt~iAv~~--~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drna-yVw~~~~~ 87 (361)
T KOG1523|consen 11 EPITCHAWNSDRTQIAVSP--NNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNA-YVWTQPSG 87 (361)
T ss_pred CceeeeeecCCCceEEecc--CCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCc-cccccCCC
Confidence 4578889999999999887 57789999987654 678899999999999999999999999999885 69998443
Q ss_pred -ee--EEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccc-----cccccc
Q 019349 213 -TK--SYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPE-----SVNEVL 284 (342)
Q Consensus 213 -~~--~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~ 284 (342)
+- .-.+.+ .....+++.|+|.+. .||+||.-..|.||-++.... .++..+... .....|
T Consensus 88 ~~WkptlvLlR--iNrAAt~V~WsP~en---kFAVgSgar~isVcy~E~ENd--------WWVsKhikkPirStv~sldW 154 (361)
T KOG1523|consen 88 GTWKPTLVLLR--INRAATCVKWSPKEN---KFAVGSGARLISVCYYEQEND--------WWVSKHIKKPIRSTVTSLDW 154 (361)
T ss_pred CeeccceeEEE--eccceeeEeecCcCc---eEEeccCccEEEEEEEecccc--------eehhhhhCCccccceeeeec
Confidence 32 112222 133488999999998 999999999999998876543 222222221 234578
Q ss_pred cccccceeeeccCCCccccEEEEEEeCCcEEEEEEecC
Q 019349 285 DPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSIN 322 (342)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~~~~~ 322 (342)
+|.. -.|++||.||+.|+|....+
T Consensus 155 hpnn--------------VLlaaGs~D~k~rVfSayIK 178 (361)
T KOG1523|consen 155 HPNN--------------VLLAAGSTDGKCRVFSAYIK 178 (361)
T ss_pred cCCc--------------ceecccccCcceeEEEEeee
Confidence 8754 46888888999999986543
No 236
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.27 E-value=9e-09 Score=96.15 Aligned_cols=176 Identities=14% Similarity=0.125 Sum_probs=113.6
Q ss_pred CCeEEEEECCCCcEEEEEecCCceEEEEEcCCeEE--EEE----CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCc
Q 019349 74 PRRLCLFNTTTGTALRELNFLTSILAVRLNKKRLV--IVL----REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNA 147 (342)
Q Consensus 74 d~~i~iwd~~~~~~~~~~~~~~~v~~i~~~~~~~~--~~~----d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (342)
...|.+||........-......+....|+|++.. .++ +..|++||+.+++.. .+..... ...+..++|++
T Consensus 181 ~~~l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g--~~~~~~~SPDG 257 (435)
T PRK05137 181 IKRLAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPG--MTFAPRFSPDG 257 (435)
T ss_pred ceEEEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCC--cccCcEECCCC
Confidence 35799999865544333344558899999988543 333 348999999887543 2322222 33456677888
Q ss_pred cEEEEeCC-CCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCC-Cc-EEEEEEcCCCeeEEEeccCcCc
Q 019349 148 CFLAVPAS-TTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQ-GT-IIRVFLVSEATKSYSFRRGTYP 224 (342)
Q Consensus 148 ~~l~~~~~-~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~d-g~-~irlwd~~~~~~~~~~~~~~~~ 224 (342)
..|++... +....|.+||+.+++. ..+..+........|+|||+.|+..+.. |. -|.++|+..++. ..+..+ .
T Consensus 258 ~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~-~~lt~~--~ 333 (435)
T PRK05137 258 RKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP-RRISFG--G 333 (435)
T ss_pred CEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe-EEeecC--C
Confidence 87765532 1234588889887754 4455566667789999999999988743 21 246788766543 333222 2
Q ss_pred eeEEEEEEecCCCcccEEEEEeCC---CcEEEEecCCC
Q 019349 225 STIFSLSFGQSMQFQDILVATSSS---GSLHVFSPGFA 259 (342)
Q Consensus 225 ~~v~~l~fs~d~~~~~~l~~~s~d---g~i~vwd~~~~ 259 (342)
..+...+|+||++ +|+..+.+ ..|.+||++..
T Consensus 334 ~~~~~~~~SpdG~---~ia~~~~~~~~~~i~~~d~~~~ 368 (435)
T PRK05137 334 GRYSTPVWSPRGD---LIAFTKQGGGQFSIGVMKPDGS 368 (435)
T ss_pred CcccCeEECCCCC---EEEEEEcCCCceEEEEEECCCC
Confidence 3356688999999 88877653 35788887543
No 237
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.27 E-value=4e-09 Score=96.73 Aligned_cols=259 Identities=14% Similarity=0.100 Sum_probs=144.6
Q ss_pred CCCEEEEEcCCc-EEEEeCCCCcEEEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEEEEEecCCc
Q 019349 18 DNSGFALSTKDG-FKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTS 96 (342)
Q Consensus 18 d~~~la~g~~~g-~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 96 (342)
++..+++++.++ +..+|.++|+++.................+.+.+.. .++.|..||.++|+.+.+.....+
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~v~~~~v~v~~-------~~g~l~a~d~~tG~~~W~~~~~~~ 176 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPLVANGLVVVRT-------NDGRLTALDAATGERLWTYSRVTP 176 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCEEECCEEEEEC-------CCCeEEEEEcCCCceeeEEccCCC
Confidence 344555665554 577777777766554332211111111223333333 378999999999998888765443
Q ss_pred eEE------EEEcCCeEEEEE-CCeEEEEECCCCceeeEEeCCCCC--c---eEEEEeeCC--CccEEEEeCCCCccEEE
Q 019349 97 ILA------VRLNKKRLVIVL-REKTYIYDANTLAILDTIDTVPNL--K---GLCAFSPSL--NACFLAVPASTTKGSVL 162 (342)
Q Consensus 97 v~~------i~~~~~~~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~--~---~~~~~~~~~--~~~~l~~~~~~~~g~i~ 162 (342)
... .....+.+++.. ++.+..+|..+++.+.+....... . ....+...| .+..+.+.+ .+|.+.
T Consensus 177 ~~~~~~~~sp~~~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~--~~g~l~ 254 (377)
T TIGR03300 177 ALTLRGSASPVIADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVS--YQGRVA 254 (377)
T ss_pred ceeecCCCCCEEECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEE--cCCEEE
Confidence 211 122234444444 679999999999877654321110 0 000000001 122444444 478999
Q ss_pred EEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEE
Q 019349 163 VYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDIL 242 (342)
Q Consensus 163 iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l 242 (342)
.||..+++.+-.... .. ..... .++..|..++.||.+ ..+|..+|+.+.+...-. .....+... .+. .|
T Consensus 255 a~d~~tG~~~W~~~~-~~-~~~p~--~~~~~vyv~~~~G~l-~~~d~~tG~~~W~~~~~~-~~~~ssp~i--~g~---~l 323 (377)
T TIGR03300 255 ALDLRSGRVLWKRDA-SS-YQGPA--VDDNRLYVTDADGVV-VALDRRSGSELWKNDELK-YRQLTAPAV--VGG---YL 323 (377)
T ss_pred EEECCCCcEEEeecc-CC-ccCce--EeCCEEEEECCCCeE-EEEECCCCcEEEcccccc-CCccccCEE--ECC---EE
Confidence 999999987655442 11 11222 246778888889985 699999998876653211 111222222 244 78
Q ss_pred EEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEEEEEEeCCcEEEEE
Q 019349 243 VATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYI 318 (342)
Q Consensus 243 ~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~ 318 (342)
++++.+|.|+++|.++++..-+.+ .... .++.. +.. -++.|++++.||.|+.|.
T Consensus 324 ~~~~~~G~l~~~d~~tG~~~~~~~--------~~~~---~~~~s----------p~~-~~~~l~v~~~dG~l~~~~ 377 (377)
T TIGR03300 324 VVGDFEGYLHWLSREDGSFVARLK--------TDGS---GIASP----------PVV-VGDGLLVQTRDGDLYAFR 377 (377)
T ss_pred EEEeCCCEEEEEECCCCCEEEEEE--------cCCC---ccccC----------CEE-ECCEEEEEeCCceEEEeC
Confidence 999999999999987765422100 0000 01111 001 126799999999999873
No 238
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.24 E-value=6.3e-09 Score=93.93 Aligned_cols=238 Identities=12% Similarity=0.181 Sum_probs=145.0
Q ss_pred EEEEEcCCCCEEEEEcCCcEEEEeCCCCcEEEEEeeCCEEEEEEcCCCCeEEEEcCCCCCC----CCCCeEEEEECCCCc
Q 019349 11 FFVSFNQDNSGFALSTKDGFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPS----LSPRRLCLFNTTTGT 86 (342)
Q Consensus 11 ~~l~fs~d~~~la~g~~~g~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~----~~d~~i~iwd~~~~~ 86 (342)
+.+.|||-|+||++=...|+.+|--.+...+.......+..+.+.+..+++++-+...... .....++|||+.+|.
T Consensus 214 tyv~wSP~GTYL~t~Hk~GI~lWGG~~f~r~~RF~Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~ 293 (698)
T KOG2314|consen 214 TYVRWSPKGTYLVTFHKQGIALWGGESFDRIQRFYHPGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGL 293 (698)
T ss_pred eeEEecCCceEEEEEeccceeeecCccHHHHHhccCCCceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccc
Confidence 5789999999999999999999987776554444446788889988889988776532221 133789999999999
Q ss_pred EEEEEecC---CceEE-EEEcCCeEEE--EECCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCC----
Q 019349 87 ALRELNFL---TSILA-VRLNKKRLVI--VLREKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPAST---- 156 (342)
Q Consensus 87 ~~~~~~~~---~~v~~-i~~~~~~~~~--~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 156 (342)
....+... ..+.. +.|+.+.-++ ...+.|.||+..+..++..- .-+..++-.++++|.+..||+=.-.
T Consensus 294 lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtpsf~lld~K--slki~gIr~FswsP~~~llAYwtpe~~~~ 371 (698)
T KOG2314|consen 294 LKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETPSFMLLDKK--SLKISGIRDFSWSPTSNLLAYWTPETNNI 371 (698)
T ss_pred hhcceeccCCCccccceEEeccCCceeEEeccceEEEEecCceeeeccc--ccCCccccCcccCCCcceEEEEcccccCC
Confidence 88877652 12222 3455443333 34788999988764333211 1123345555555555555432100
Q ss_pred ----------Ccc-----------------------------------------EEEEEEccCCc-eeEEEecccCCeeE
Q 019349 157 ----------TKG-----------------------------------------SVLVYNVMELH-SHCEIDAHQAPLAA 184 (342)
Q Consensus 157 ----------~~g-----------------------------------------~i~iwd~~~~~-~~~~~~~h~~~v~~ 184 (342)
... .+.|+.++... ++..+ .-...|..
T Consensus 372 parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~v-elke~vi~ 450 (698)
T KOG2314|consen 372 PARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVV-ELKESVIA 450 (698)
T ss_pred cceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceee-ecchheee
Confidence 000 11112111111 11111 12345777
Q ss_pred EEECCCCCEEEEEeCC--CcEEEEEEcCC-C---eeEEEeccCcCceeEEEEEEecCCCcccEEEEEe---CCCcEEEEe
Q 019349 185 IVLSSNGMYIATASEQ--GTIIRVFLVSE-A---TKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATS---SSGSLHVFS 255 (342)
Q Consensus 185 i~~s~dg~~lat~s~d--g~~irlwd~~~-~---~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s---~dg~i~vwd 255 (342)
.+|-|.|+.+++-+.. ...++++-+++ . .++.++.. ...+.+.|+|.|+ +++++. ..|.+.++|
T Consensus 451 FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk----~~~N~vfwsPkG~---fvvva~l~s~~g~l~F~D 523 (698)
T KOG2314|consen 451 FAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK----KFANTVFWSPKGR---FVVVAALVSRRGDLEFYD 523 (698)
T ss_pred eeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc----cccceEEEcCCCc---EEEEEEecccccceEEEe
Confidence 8899999988776532 23357887763 2 23333322 2367899999999 777764 468899999
Q ss_pred cCC
Q 019349 256 PGF 258 (342)
Q Consensus 256 ~~~ 258 (342)
...
T Consensus 524 ~~~ 526 (698)
T KOG2314|consen 524 TDY 526 (698)
T ss_pred cch
Confidence 875
No 239
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.24 E-value=9.9e-09 Score=95.85 Aligned_cols=216 Identities=14% Similarity=0.092 Sum_probs=137.0
Q ss_pred EEEEeCCCCcEE-EEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEEEEEecCCceEEEEEcCCeE-
Q 019349 30 FKIFDSSTGRLC-YERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKRL- 107 (342)
Q Consensus 30 ~~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~i~~~~~~~- 107 (342)
+.++|.+..... ...+...+....+.++++.+++++... .+..|.+||+.+++...-..++..+....|+|++.
T Consensus 184 l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~----g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~ 259 (435)
T PRK05137 184 LAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYAN----GRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRK 259 (435)
T ss_pred EEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecC----CCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCE
Confidence 566676554332 233345677778888999888886421 25789999999887654344555677888988763
Q ss_pred -EEEE--CC--eEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCC-CCccEEEEEEccCCceeEEEecccCC
Q 019349 108 -VIVL--RE--KTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPAS-TTKGSVLVYNVMELHSHCEIDAHQAP 181 (342)
Q Consensus 108 -~~~~--d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~g~i~iwd~~~~~~~~~~~~h~~~ 181 (342)
++.. ++ .|++||+.+++.. .+..+.. ......++||+..+++.+. .....|.+||+..++. ..+..+...
T Consensus 260 la~~~~~~g~~~Iy~~d~~~~~~~-~Lt~~~~--~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~-~~lt~~~~~ 335 (435)
T PRK05137 260 VVMSLSQGGNTDIYTMDLRSGTTT-RLTDSPA--IDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP-RRISFGGGR 335 (435)
T ss_pred EEEEEecCCCceEEEEECCCCceE-EccCCCC--ccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe-EEeecCCCc
Confidence 3333 33 6888899877543 3322222 2334566778888877652 1124688888776544 344444555
Q ss_pred eeEEEECCCCCEEEEEeCCC--cEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCC------CcEEE
Q 019349 182 LAAIVLSSNGMYIATASEQG--TIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSS------GSLHV 253 (342)
Q Consensus 182 v~~i~~s~dg~~lat~s~dg--~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~d------g~i~v 253 (342)
+....|+|||++|+..+.++ .-|.+||+..+.. ..+..+ ..+...+|+||++ +|+..+.+ ..+++
T Consensus 336 ~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt~~---~~~~~p~~spDG~---~i~~~~~~~~~~~~~~L~~ 408 (435)
T PRK05137 336 YSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILTSG---FLVEGPTWAPNGR---VIMFFRQTPGSGGAPKLYT 408 (435)
T ss_pred ccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-EeccCC---CCCCCCeECCCCC---EEEEEEccCCCCCcceEEE
Confidence 67789999999999876543 2356888765442 333222 2356789999999 77766543 25777
Q ss_pred EecCCCC
Q 019349 254 FSPGFAI 260 (342)
Q Consensus 254 wd~~~~~ 260 (342)
+|++...
T Consensus 409 ~dl~g~~ 415 (435)
T PRK05137 409 VDLTGRN 415 (435)
T ss_pred EECCCCc
Confidence 7776543
No 240
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.24 E-value=1.2e-07 Score=85.71 Aligned_cols=273 Identities=14% Similarity=0.111 Sum_probs=159.0
Q ss_pred CcEEEEeC--CCCcEEEEE---eeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCC--c--EEEEEe-cCCce
Q 019349 28 DGFKIFDS--STGRLCYER---AVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTG--T--ALRELN-FLTSI 97 (342)
Q Consensus 28 ~g~~v~d~--~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~--~--~~~~~~-~~~~v 97 (342)
+++.+|++ +++++.... ....-..+.+.++.+.+..+.... ...+.|..|++... + .+.+.. .....
T Consensus 13 ~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~---~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p 89 (345)
T PF10282_consen 13 GGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGS---GDSGGVSSYRIDPDTGTLTLLNSVPSGGSSP 89 (345)
T ss_dssp TEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTS---STTTEEEEEEEETTTTEEEEEEEEEESSSCE
T ss_pred CcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccc---cCCCCEEEEEECCCcceeEEeeeeccCCCCc
Confidence 46777665 666554322 223444566666777766665421 13678888887653 3 233343 33456
Q ss_pred EEEEEcCC--eEEEEE--CCeEEEEECCC-CceeeE---EeC--------CCCCceEEEEeeCCCccEEEEeCCCCccEE
Q 019349 98 LAVRLNKK--RLVIVL--REKTYIYDANT-LAILDT---IDT--------VPNLKGLCAFSPSLNACFLAVPASTTKGSV 161 (342)
Q Consensus 98 ~~i~~~~~--~~~~~~--d~~i~i~d~~~-~~~~~~---~~~--------~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i 161 (342)
..++++++ .++++. ++.+.++++.. +.+... +.. .......-++..+|++++++++.. ....|
T Consensus 90 ~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dl-G~D~v 168 (345)
T PF10282_consen 90 CHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDL-GADRV 168 (345)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEET-TTTEE
T ss_pred EEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEec-CCCEE
Confidence 67888665 455555 78999999976 433322 110 011223456677888888887765 45689
Q ss_pred EEEEccCCc--e--eEEEe-cccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcC--CCee--EEEec---cCcCc-eeEE
Q 019349 162 LVYNVMELH--S--HCEID-AHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVS--EATK--SYSFR---RGTYP-STIF 228 (342)
Q Consensus 162 ~iwd~~~~~--~--~~~~~-~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~--~~~~--~~~~~---~~~~~-~~v~ 228 (342)
.+|++.... . ...+. ......+.++|+|||+++....+....|.++++. +++. +..+. .+... ....
T Consensus 169 ~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 248 (345)
T PF10282_consen 169 YVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPA 248 (345)
T ss_dssp EEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEE
T ss_pred EEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCce
Confidence 999997654 2 22332 2345678999999999998887766656799987 4432 22221 11111 1367
Q ss_pred EEEEecCCCcccEEEEEe-CCCcEEEEecCCCC-CCCCCCCccccccccccccccccccccccceeeeccCCCccccEEE
Q 019349 229 SLSFGQSMQFQDILVATS-SSGSLHVFSPGFAI-NQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVS 306 (342)
Q Consensus 229 ~l~fs~d~~~~~~l~~~s-~dg~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 306 (342)
.|+++||++ +|.++. ..++|.+|+++... .... +.. +.. .+.... .+.+.+++++|+
T Consensus 249 ~i~ispdg~---~lyvsnr~~~sI~vf~~d~~~g~l~~-------~~~--------~~~-~G~~Pr--~~~~s~~g~~l~ 307 (345)
T PF10282_consen 249 EIAISPDGR---FLYVSNRGSNSISVFDLDPATGTLTL-------VQT--------VPT-GGKFPR--HFAFSPDGRYLY 307 (345)
T ss_dssp EEEE-TTSS---EEEEEECTTTEEEEEEECTTTTTEEE-------EEE--------EEE-SSSSEE--EEEE-TTSSEEE
T ss_pred eEEEecCCC---EEEEEeccCCEEEEEEEecCCCceEE-------EEE--------EeC-CCCCcc--EEEEeCCCCEEE
Confidence 899999999 666654 57789999995321 1110 000 000 010011 223356668899
Q ss_pred EEEe-CCcEEEEEEecCCCC
Q 019349 307 VITY-NGYFVEYIFSINNCC 325 (342)
Q Consensus 307 ~~~~-dg~v~~~~~~~~~~~ 325 (342)
+++. ++.|.+|+++++.+.
T Consensus 308 Va~~~s~~v~vf~~d~~tG~ 327 (345)
T PF10282_consen 308 VANQDSNTVSVFDIDPDTGK 327 (345)
T ss_dssp EEETTTTEEEEEEEETTTTE
T ss_pred EEecCCCeEEEEEEeCCCCc
Confidence 8885 678999999987765
No 241
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.23 E-value=5e-10 Score=107.50 Aligned_cols=235 Identities=15% Similarity=0.129 Sum_probs=162.6
Q ss_pred CCCCCeEEEEEcCCCCEEEEEcCCcEEEEeCCCCcEEEE--------Ee--------eCCEEEEEE--------------
Q 019349 5 SSSYPVFFVSFNQDNSGFALSTKDGFKIFDSSTGRLCYE--------RA--------VGAFSIVEM-------------- 54 (342)
Q Consensus 5 ~~~~~V~~l~fs~d~~~la~g~~~g~~v~d~~~~~~~~~--------~~--------~~~~~~~~~-------------- 54 (342)
++-.++++.++-. .+|.+|..--+.+||+..+.++.. .| .+...+...
T Consensus 5 s~~~~l~~~~~~~--~~llag~gp~i~~yd~~s~~li~~~~~~~~~~~H~~e~~~~l~~~~~v~~~~~~~v~~~~~~~~~ 82 (967)
T KOG0974|consen 5 SSLGPLNLPQLVS--DYLLAGSGPEILVYDLSSGCLIRHLIQSKILEVHRGEGKVKLLSGKIVTCAKSDEVYVKEASNQI 82 (967)
T ss_pred cccccccchhhcc--ceeeecCCCceEEeeCCchhHhhhhhhhcccccccccccceeccceEEEEEeecceeecchhhhh
Confidence 4445667777766 788888877899999887743211 11 000000000
Q ss_pred -------------cCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEEEEEecCCce-----EEEEEcCCeEEEEE---CC
Q 019349 55 -------------LYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSI-----LAVRLNKKRLVIVL---RE 113 (342)
Q Consensus 55 -------------~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v-----~~i~~~~~~~~~~~---d~ 113 (342)
.+....+++.. .++.+-+||.+.+.....+..+... .-+-.+.+.+.+++ -+
T Consensus 83 ~~~~s~wi~g~~l~~e~k~i~l~~-------~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~ 155 (967)
T KOG0974|consen 83 IERFSDWIFGAKLFEENKKIALVT-------SRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFG 155 (967)
T ss_pred hhhccccccccchhhhcceEEEEE-------cCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccc
Confidence 01112334444 3788999998888777776655422 22233566666655 68
Q ss_pred eEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCceeE-EEecccCCeeEEEECCCCC
Q 019349 114 KTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHC-EIDAHQAPLAAIVLSSNGM 192 (342)
Q Consensus 114 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~-~~~~h~~~v~~i~~s~dg~ 192 (342)
.|.+|+..-...-..+. .+...++.+..+-++.++++.+ .|.++++|++.+.+... +.-+|...|..+.|.|+
T Consensus 156 ~iivW~~~~dn~p~~l~--GHeG~iF~i~~s~dg~~i~s~S--dDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n-- 229 (967)
T KOG0974|consen 156 EIIVWKPHEDNKPIRLK--GHEGSIFSIVTSLDGRYIASVS--DDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN-- 229 (967)
T ss_pred cEEEEeccccCCcceec--ccCCceEEEEEccCCcEEEEEe--cCcceeeeecccccccCcccccccceeEEEEeccc--
Confidence 99999986222111223 3344678888888999999998 69999999999988765 55689999999999998
Q ss_pred EEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCC
Q 019349 193 YIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAI 260 (342)
Q Consensus 193 ~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~ 260 (342)
+++|+++|.+. |+|+.. ++.+..+.. +....+..++..++.. .+.+++.|+++++|++....
T Consensus 230 ~i~t~gedctc-rvW~~~-~~~l~~y~~-h~g~~iw~~~~~~~~~---~~vT~g~Ds~lk~~~l~~r~ 291 (967)
T KOG0974|consen 230 RIITVGEDCTC-RVWGVN-GTQLEVYDE-HSGKGIWKIAVPIGVI---IKVTGGNDSTLKLWDLNGRG 291 (967)
T ss_pred eeEEeccceEE-EEEecc-cceehhhhh-hhhcceeEEEEcCCce---EEEeeccCcchhhhhhhccc
Confidence 99999999985 999764 555556643 3344599999999988 99999999999999986543
No 242
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.22 E-value=2.8e-08 Score=91.17 Aligned_cols=258 Identities=14% Similarity=0.116 Sum_probs=151.2
Q ss_pred CCEEEEEcCCc-EEEEeCCCCcEEEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEEEEEecCCce
Q 019349 19 NSGFALSTKDG-FKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSI 97 (342)
Q Consensus 19 ~~~la~g~~~g-~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v 97 (342)
+..+.+++.++ +.-+|..+|+++.....+...........+.+. ++. .++.+..+|..+|+.+.+......+
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v~~~~v~-v~~------~~g~l~ald~~tG~~~W~~~~~~~~ 137 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGADGGLVF-VGT------EKGEVIALDAEDGKELWRAKLSSEV 137 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEEcCCEEE-EEc------CCCEEEEEECCCCcEeeeeccCcee
Confidence 45677777665 688999999887665433211111122334444 333 3789999999999999888766654
Q ss_pred EEE-EEcCCeEEEEE-CCeEEEEECCCCceeeEEeCCCCCceE---EEEeeCCCccEEEEeCCCCccEEEEEEccCCcee
Q 019349 98 LAV-RLNKKRLVIVL-REKTYIYDANTLAILDTIDTVPNLKGL---CAFSPSLNACFLAVPASTTKGSVLVYNVMELHSH 172 (342)
Q Consensus 98 ~~i-~~~~~~~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~ 172 (342)
.+. ....+.+++.. ++.++.||..+++.+.+.......... ...... ++ .++++. .+|.+..+|.++++.+
T Consensus 138 ~~~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~-~~-~v~~~~--~~g~v~ald~~tG~~~ 213 (377)
T TIGR03300 138 LSPPLVANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA-DG-GVLVGF--AGGKLVALDLQTGQPL 213 (377)
T ss_pred ecCCEEECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE-CC-EEEEEC--CCCEEEEEEccCCCEe
Confidence 332 22345555544 789999999999888776543321110 000011 12 344444 4789999999998865
Q ss_pred EEEeccc----C---CeeEEEECC--CCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEE
Q 019349 173 CEIDAHQ----A---PLAAIVLSS--NGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILV 243 (342)
Q Consensus 173 ~~~~~h~----~---~v~~i~~s~--dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~ 243 (342)
-...... . .+..+.-+| .+..+..++.+|.+ ..||..+|+.+....... ....+. ++. .+.
T Consensus 214 W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l-~a~d~~tG~~~W~~~~~~----~~~p~~--~~~---~vy 283 (377)
T TIGR03300 214 WEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRV-AALDLRSGRVLWKRDASS----YQGPAV--DDN---RLY 283 (377)
T ss_pred eeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEE-EEEECCCCcEEEeeccCC----ccCceE--eCC---EEE
Confidence 4332110 0 000111111 34577888888875 699999999877664211 122222 344 688
Q ss_pred EEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEEEEEEeCCcEEEEEE
Q 019349 244 ATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIF 319 (342)
Q Consensus 244 ~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~~ 319 (342)
+++.+|.++.+|..+++..-+.. . + +.. ..-+| ...++.|++++.||.++.++.
T Consensus 284 v~~~~G~l~~~d~~tG~~~W~~~---~-~----~~~--~~ssp------------~i~g~~l~~~~~~G~l~~~d~ 337 (377)
T TIGR03300 284 VTDADGVVVALDRRSGSELWKND---E-L----KYR--QLTAP------------AVVGGYLVVGDFEGYLHWLSR 337 (377)
T ss_pred EECCCCeEEEEECCCCcEEEccc---c-c----cCC--ccccC------------EEECCEEEEEeCCCEEEEEEC
Confidence 88999999999998765421100 0 0 000 00011 012368999999999888753
No 243
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.22 E-value=2.3e-08 Score=93.08 Aligned_cols=212 Identities=15% Similarity=0.084 Sum_probs=126.0
Q ss_pred EEEEeCCCCcE-EEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEEEEEecCCceEEEEEcCCe--
Q 019349 30 FKIFDSSTGRL-CYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKR-- 106 (342)
Q Consensus 30 ~~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~i~~~~~~-- 106 (342)
+.++|.+.... ........+....+.++++.+++++... ....|.+||+.+++.......+..+....|+|+.
T Consensus 178 L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~----~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~ 253 (427)
T PRK02889 178 LQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFES----KKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRT 253 (427)
T ss_pred EEEECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccC----CCcEEEEEECCCCCEEEeecCCCCccceEECCCCCE
Confidence 45556543321 1222334555667888888888876421 2356999999988765444455566778899885
Q ss_pred EEEEE--CC--eEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEc--cCCceeEEEecccC
Q 019349 107 LVIVL--RE--KTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNV--MELHSHCEIDAHQA 180 (342)
Q Consensus 107 ~~~~~--d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~--~~~~~~~~~~~h~~ 180 (342)
+++.. ++ .|+++|+..+. ...+..+.. .....+++||+..+++.+. ..|...||.+ .+++. ..+..+..
T Consensus 254 la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~--~~~~~~wSpDG~~l~f~s~-~~g~~~Iy~~~~~~g~~-~~lt~~g~ 328 (427)
T PRK02889 254 LAVALSRDGNSQIYTVNADGSG-LRRLTQSSG--IDTEPFFSPDGRSIYFTSD-RGGAPQIYRMPASGGAA-QRVTFTGS 328 (427)
T ss_pred EEEEEccCCCceEEEEECCCCC-cEECCCCCC--CCcCeEEcCCCCEEEEEec-CCCCcEEEEEECCCCce-EEEecCCC
Confidence 33333 44 45556665544 333322221 2234467788888887653 3466666654 44432 22222223
Q ss_pred CeeEEEECCCCCEEEEEeCCCc--EEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCC-c--EEEEe
Q 019349 181 PLAAIVLSSNGMYIATASEQGT--IIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSG-S--LHVFS 255 (342)
Q Consensus 181 ~v~~i~~s~dg~~lat~s~dg~--~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg-~--i~vwd 255 (342)
.....+|||||++|+..+.++. .|.+||+.+++.. .+..+ ......+|+||++ +|+.++.++ . +++.+
T Consensus 329 ~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~-~lt~~---~~~~~p~~spdg~---~l~~~~~~~g~~~l~~~~ 401 (427)
T PRK02889 329 YNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVT-ALTDT---TRDESPSFAPNGR---YILYATQQGGRSVLAAVS 401 (427)
T ss_pred CcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeE-EccCC---CCccCceECCCCC---EEEEEEecCCCEEEEEEE
Confidence 3446789999999998876542 3579999887643 33222 1235679999999 777776544 3 55555
Q ss_pred cC
Q 019349 256 PG 257 (342)
Q Consensus 256 ~~ 257 (342)
+.
T Consensus 402 ~~ 403 (427)
T PRK02889 402 SD 403 (427)
T ss_pred CC
Confidence 53
No 244
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.19 E-value=1.6e-08 Score=91.93 Aligned_cols=184 Identities=17% Similarity=0.226 Sum_probs=131.2
Q ss_pred cCCCCEEEEEcCCc-EEEEeCCCCcEEEEEee-----CCEEEEEEc----C---------------CCCeEEEEcCCCCC
Q 019349 16 NQDNSGFALSTKDG-FKIFDSSTGRLCYERAV-----GAFSIVEML----Y---------------SSSLLAIVGAGEQP 70 (342)
Q Consensus 16 s~d~~~la~g~~~g-~~v~d~~~~~~~~~~~~-----~~~~~~~~~----~---------------~~~~~~~~~~g~~~ 70 (342)
.|-..++|..+.+| +|+||...+++..+... +....+.|. . ....+++.|.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt---- 77 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGT---- 77 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeec----
Confidence 45667899888888 59999988876544321 222222221 0 1112334444
Q ss_pred CCCCCeEEEEECCCCcEEEEEe---cCCceEEEEEcCCeEE--EEE-CCeEEEEECCCCceeeEEeCCCCCceEEEEeeC
Q 019349 71 SLSPRRLCLFNTTTGTALRELN---FLTSILAVRLNKKRLV--IVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPS 144 (342)
Q Consensus 71 ~~~d~~i~iwd~~~~~~~~~~~---~~~~v~~i~~~~~~~~--~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (342)
..+.|.+++...|+....+. +.+.|.++..+.+.-. .+. |.++..|++...+.++.+..... ....+++.
T Consensus 78 --~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~--~~~sl~is 153 (541)
T KOG4547|consen 78 --PQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKP--LVSSLCIS 153 (541)
T ss_pred --CCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCC--ccceEEEc
Confidence 37899999999998877775 4568888887665332 233 77999999999988888765433 45566777
Q ss_pred CCccEEEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCC-----CCEEEEEeCCCcEEEEEEcCC
Q 019349 145 LNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSN-----GMYIATASEQGTIIRVFLVSE 211 (342)
Q Consensus 145 ~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~d-----g~~lat~s~dg~~irlwd~~~ 211 (342)
||+..+++++ ++|++||+++.+.+.+|.+|.++|+++.|-.+ |.++.++..-.+.|-+|-+..
T Consensus 154 ~D~~~l~~as----~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 154 PDGKILLTAS----RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred CCCCEEEecc----ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 8888988876 67999999999999999999999999999877 777777654445566887754
No 245
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.16 E-value=1.2e-10 Score=109.17 Aligned_cols=236 Identities=11% Similarity=0.067 Sum_probs=146.6
Q ss_pred CEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEEEEEecC-CceEEEEEcCCeEEEEE---CCeEEEEECCCC
Q 019349 48 AFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFL-TSILAVRLNKKRLVIVL---REKTYIYDANTL 123 (342)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~~~~~-~~v~~i~~~~~~~~~~~---d~~i~i~d~~~~ 123 (342)
.+.++.+...+.+++..+ +|..++||...++.++.+...+ +.|++++.+.+.+++++ |..|++|-+.++
T Consensus 192 aVyca~fDrtg~~Iitgs-------dd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~ 264 (1113)
T KOG0644|consen 192 AVYCAIFDRTGRYIITGS-------DDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDG 264 (1113)
T ss_pred heeeeeeccccceEeecC-------ccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCC
Confidence 355555555555554443 5999999999999999888654 48999999888777655 678999999999
Q ss_pred ceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCceeEEE----ec-ccCCeeE--------------
Q 019349 124 AILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEI----DA-HQAPLAA-------------- 184 (342)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~----~~-h~~~v~~-------------- 184 (342)
.++..+..|.. .+.+++++|-. +.+ .||++++||.+ ..+.... +. -..-+.+
T Consensus 265 ~pvsvLrghtg--avtaiafsP~~----sss--~dgt~~~wd~r-~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs 335 (1113)
T KOG0644|consen 265 APVSVLRGHTG--AVTAIAFSPRA----SSS--DDGTCRIWDAR-LEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGS 335 (1113)
T ss_pred chHHHHhcccc--ceeeeccCccc----cCC--CCCceEecccc-ccccccCCCCCCcccccceeeeecccccccccccc
Confidence 98888877665 45666666532 233 69999999986 1110000 00 0111222
Q ss_pred ------------EEECCCCCEEEEEe-----------CCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccE
Q 019349 185 ------------IVLSSNGMYIATAS-----------EQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDI 241 (342)
Q Consensus 185 ------------i~~s~dg~~lat~s-----------~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~ 241 (342)
+++...+-.+++.+ .+-. +.+|++.+|++++.+.. +...++.|.++|-+. ..
T Consensus 336 ~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~-~~vwnl~~g~l~H~l~g--hsd~~yvLd~Hpfn~--ri 410 (1113)
T KOG0644|consen 336 RDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHR-LCVWNLYTGQLLHNLMG--HSDEVYVLDVHPFNP--RI 410 (1113)
T ss_pred CCcccccchhhHhhhhccceEEEeccccccccceeeeeeeE-eeeeecccchhhhhhcc--cccceeeeeecCCCc--Hh
Confidence 22222222222222 2222 46788888877766543 345688899999776 25
Q ss_pred EEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEEEEEEeCCcEEEEEEec
Q 019349 242 LVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSI 321 (342)
Q Consensus 242 l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~~~~ 321 (342)
..+++.||...|||+-.+.+.+..... ....+.+-+++ ++..++..-.-|.++|+....
T Consensus 411 ~msag~dgst~iwdi~eg~pik~y~~g-------h~kl~d~kFSq--------------dgts~~lsd~hgql~i~g~gq 469 (1113)
T KOG0644|consen 411 AMSAGYDGSTIIWDIWEGIPIKHYFIG-------HGKLVDGKFSQ--------------DGTSIALSDDHGQLYILGTGQ 469 (1113)
T ss_pred hhhccCCCceEeeecccCCcceeeecc-------cceeeccccCC--------------CCceEecCCCCCceEEeccCC
Confidence 557789999999999887765532100 11122233333 335566566667777776655
Q ss_pred CCCC
Q 019349 322 NNCC 325 (342)
Q Consensus 322 ~~~~ 325 (342)
.+++
T Consensus 470 s~s~ 473 (1113)
T KOG0644|consen 470 SKSQ 473 (1113)
T ss_pred Cccc
Confidence 4443
No 246
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.15 E-value=3.4e-08 Score=91.82 Aligned_cols=176 Identities=14% Similarity=0.054 Sum_probs=112.2
Q ss_pred CCeEEEEECCCCcEEEEEecCCceEEEEEcCCeEEEE--E--C--CeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCc
Q 019349 74 PRRLCLFNTTTGTALRELNFLTSILAVRLNKKRLVIV--L--R--EKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNA 147 (342)
Q Consensus 74 d~~i~iwd~~~~~~~~~~~~~~~v~~i~~~~~~~~~~--~--d--~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (342)
...|.++|...+....-......+....|+++...++ . + ..|++||+.+++..... .... ...+.+++|++
T Consensus 169 ~~~l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~-~~~~--~~~~~~~spDg 245 (417)
T TIGR02800 169 RYELQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVA-SFPG--MNGAPAFSPDG 245 (417)
T ss_pred cceEEEEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEee-cCCC--CccceEECCCC
Confidence 4568888876444333333444688888988764433 2 2 47999999887543322 2221 23345667788
Q ss_pred cEEEEeCC-CCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCC-c-EEEEEEcCCCeeEEEeccCcCc
Q 019349 148 CFLAVPAS-TTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQG-T-IIRVFLVSEATKSYSFRRGTYP 224 (342)
Q Consensus 148 ~~l~~~~~-~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg-~-~irlwd~~~~~~~~~~~~~~~~ 224 (342)
..|++... +.+..|.+||+.+++. ..+..|........|+|||++|+..+..+ . -|.++|+.+++.. .+... .
T Consensus 246 ~~l~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~--~ 321 (417)
T TIGR02800 246 SKLAVSLSKDGNPDIYVMDLDGKQL-TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFR--G 321 (417)
T ss_pred CEEEEEECCCCCccEEEEECCCCCE-EECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecC--C
Confidence 77765432 1234688999887654 34444555556789999999998777543 2 2457788766542 33211 2
Q ss_pred eeEEEEEEecCCCcccEEEEEeCCC---cEEEEecCCC
Q 019349 225 STIFSLSFGQSMQFQDILVATSSSG---SLHVFSPGFA 259 (342)
Q Consensus 225 ~~v~~l~fs~d~~~~~~l~~~s~dg---~i~vwd~~~~ 259 (342)
......+|+||++ +|+.++.++ .|.+||+...
T Consensus 322 ~~~~~~~~spdg~---~i~~~~~~~~~~~i~~~d~~~~ 356 (417)
T TIGR02800 322 GYNASPSWSPDGD---LIAFVHREGGGFNIAVMDLDGG 356 (417)
T ss_pred CCccCeEECCCCC---EEEEEEccCCceEEEEEeCCCC
Confidence 3356789999999 888888776 7888888764
No 247
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.14 E-value=2.2e-07 Score=95.00 Aligned_cols=236 Identities=13% Similarity=0.082 Sum_probs=140.6
Q ss_pred EEEEEcCCCCEEEEE-cCCc-EEEEeCCCCcEEEEEee-C---------------CEEEEEEcCCCCeEEEEcCCCCCCC
Q 019349 11 FFVSFNQDNSGFALS-TKDG-FKIFDSSTGRLCYERAV-G---------------AFSIVEMLYSSSLLAIVGAGEQPSL 72 (342)
Q Consensus 11 ~~l~fs~d~~~la~g-~~~g-~~v~d~~~~~~~~~~~~-~---------------~~~~~~~~~~~~~~~~~~~g~~~~~ 72 (342)
..+++++++..|.++ +.+. +++||.+.. .+..... + .-.-+.+..+.+.+.++..
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~-~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt------ 643 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGN-FIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADT------ 643 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCC-EEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeC------
Confidence 467898865544444 4444 789997643 3322111 1 0112333334455555443
Q ss_pred CCCeEEEEECCCCcEEEEEec------------------CCceEEEEEcC-C-eEEEEE--CCeEEEEECCCCceeeEEe
Q 019349 73 SPRRLCLFNTTTGTALRELNF------------------LTSILAVRLNK-K-RLVIVL--REKTYIYDANTLAILDTID 130 (342)
Q Consensus 73 ~d~~i~iwd~~~~~~~~~~~~------------------~~~v~~i~~~~-~-~~~~~~--d~~i~i~d~~~~~~~~~~~ 130 (342)
..+.|+.+|..++.. .++.. -....++++++ + .++++. +++|++||..++... .+.
T Consensus 644 ~n~~Ir~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~ 721 (1057)
T PLN02919 644 ENHALREIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFS 721 (1057)
T ss_pred CCceEEEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEe
Confidence 357899999877543 22211 01235788887 3 444544 569999999876432 221
Q ss_pred CCC-------------CCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCceeEEEec--------------------
Q 019349 131 TVP-------------NLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDA-------------------- 177 (342)
Q Consensus 131 ~~~-------------~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~-------------------- 177 (342)
... .......++.++++..|.++.. .++.|++||+.++.......+
T Consensus 722 G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs-~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~ 800 (1057)
T PLN02919 722 GDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADS-ESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSE 800 (1057)
T ss_pred cCCccccCCCCccccccccCccEEEEeCCCCEEEEEEC-CCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhh
Confidence 100 0011234556666665555554 578999999987653211100
Q ss_pred -ccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCc-----------CceeEEEEEEecCCCcccEEEEE
Q 019349 178 -HQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGT-----------YPSTIFSLSFGQSMQFQDILVAT 245 (342)
Q Consensus 178 -h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~-----------~~~~v~~l~fs~d~~~~~~l~~~ 245 (342)
.-.....|+++++|+.+++-+.+++ |++||..++........+. .-.....|+++++|+ ++++-
T Consensus 801 ~~l~~P~Gvavd~dG~LYVADs~N~r-IrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~---lyVaD 876 (1057)
T PLN02919 801 VLLQHPLGVLCAKDGQIYVADSYNHK-IKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGR---LFVAD 876 (1057)
T ss_pred hhccCCceeeEeCCCcEEEEECCCCE-EEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCC---EEEEE
Confidence 0112468999999998888877776 6999998876543221110 011367899999998 88888
Q ss_pred eCCCcEEEEecCCCC
Q 019349 246 SSSGSLHVFSPGFAI 260 (342)
Q Consensus 246 s~dg~i~vwd~~~~~ 260 (342)
+.+++|++||+++..
T Consensus 877 t~Nn~Irvid~~~~~ 891 (1057)
T PLN02919 877 TNNSLIRYLDLNKGE 891 (1057)
T ss_pred CCCCEEEEEECCCCc
Confidence 999999999998764
No 248
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.13 E-value=2e-09 Score=91.31 Aligned_cols=187 Identities=16% Similarity=0.189 Sum_probs=132.1
Q ss_pred EEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEEEEEecCCceEEEEEcCCe--EEEEE--CCeEEEEECCCCcee
Q 019349 51 IVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKR--LVIVL--REKTYIYDANTLAIL 126 (342)
Q Consensus 51 ~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~i~~~~~~--~~~~~--d~~i~i~d~~~~~~~ 126 (342)
...+.+.+++++.++. -.+.|=|..+-+...-+..-..|.-|.|..+. ++.+. ++.|.+|++...+-.
T Consensus 13 ~c~fSp~g~yiAs~~~--------yrlviRd~~tlq~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ 84 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSR--------YRLVIRDSETLQLHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWY 84 (447)
T ss_pred ceeECCCCCeeeeeee--------eEEEEeccchhhHHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeecceeE
Confidence 3567788889888764 36777776665544333333456666665543 22222 779999999887766
Q ss_pred eEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeC-------
Q 019349 127 DTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASE------- 199 (342)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~------- 199 (342)
.+++. .+.++.+.+++|+++.+...+. -+-.|.+|.+.+.+.. .++-.+..+..++|+|||++.|.++.
T Consensus 85 ckIde--g~agls~~~WSPdgrhiL~tse-F~lriTVWSL~t~~~~-~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv 160 (447)
T KOG4497|consen 85 CKIDE--GQAGLSSISWSPDGRHILLTSE-FDLRITVWSLNTQKGY-LLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYV 160 (447)
T ss_pred EEecc--CCCcceeeeECCCcceEeeeec-ceeEEEEEEeccceeE-EecccccCceeEEECCCCceeeeeecccHHHHH
Confidence 66653 4567889999999977666554 6889999999886654 33434556788999999999988865
Q ss_pred ----------------------------CCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcE
Q 019349 200 ----------------------------QGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSL 251 (342)
Q Consensus 200 ----------------------------dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i 251 (342)
||..+-+||.--..++..+.++ -.+..++|+|.++ +|++|+.|+.+
T Consensus 161 ~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~---lG~k~v~wsP~~q---flavGsyD~~l 234 (447)
T KOG4497|consen 161 QISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERG---LGLKFVEWSPCNQ---FLAVGSYDQML 234 (447)
T ss_pred HHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeec---cceeEEEeccccc---eEEeeccchhh
Confidence 4556677876544454444332 2378899999999 99999999988
Q ss_pred EEEe
Q 019349 252 HVFS 255 (342)
Q Consensus 252 ~vwd 255 (342)
+|-+
T Consensus 235 rvln 238 (447)
T KOG4497|consen 235 RVLN 238 (447)
T ss_pred hhhc
Confidence 8765
No 249
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=99.11 E-value=1.7e-07 Score=80.11 Aligned_cols=211 Identities=17% Similarity=0.179 Sum_probs=134.2
Q ss_pred EEEEeCCCCcEEEEEeeCC-E--EEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEEEEEecCCceEE-EEEcCC
Q 019349 30 FKIFDSSTGRLCYERAVGA-F--SIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILA-VRLNKK 105 (342)
Q Consensus 30 ~~v~d~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~-i~~~~~ 105 (342)
+..||..+|+.+....... . .........+.+.+.+. ++.|..||..+|+.+.+...+..+.. .....+
T Consensus 5 l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~-------~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~ 77 (238)
T PF13360_consen 5 LSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASG-------DGNLYALDAKTGKVLWRFDLPGPISGAPVVDGG 77 (238)
T ss_dssp EEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEET-------TSEEEEEETTTSEEEEEEECSSCGGSGEEEETT
T ss_pred EEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcC-------CCEEEEEECCCCCEEEEeeccccccceeeeccc
Confidence 5788888888776654311 1 11112224445544433 78999999999999999887654322 355677
Q ss_pred eEEEEE-CCeEEEEECCCCceeeEE-eCCCCCc---eEEEEeeCCCccEEEEeCCCCccEEEEEEccCCceeEEEecccC
Q 019349 106 RLVIVL-REKTYIYDANTLAILDTI-DTVPNLK---GLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQA 180 (342)
Q Consensus 106 ~~~~~~-d~~i~i~d~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~ 180 (342)
.+++.. ++.++.+|..+++.+... ....... ........ +..++++. .+|.|..+|+++|+.+-....+..
T Consensus 78 ~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~g~l~~~d~~tG~~~w~~~~~~~ 153 (238)
T PF13360_consen 78 RVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVD--GDRLYVGT--SSGKLVALDPKTGKLLWKYPVGEP 153 (238)
T ss_dssp EEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEE--TTEEEEEE--TCSEEEEEETTTTEEEEEEESSTT
T ss_pred ccccccceeeeEecccCCcceeeeeccccccccccccccCceEe--cCEEEEEe--ccCcEEEEecCCCcEEEEeecCCC
Confidence 777776 789999999999998884 4331111 11122222 23444444 368999999999998877765442
Q ss_pred C----------eeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCc
Q 019349 181 P----------LAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGS 250 (342)
Q Consensus 181 ~----------v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~ 250 (342)
+ +..-.+..++ .+..++.+|.++.+ |+.+++.+.+.. . . .+..+ ...++. .|++++.++.
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d~~tg~~~w~~~--~-~-~~~~~-~~~~~~---~l~~~~~~~~ 223 (238)
T PF13360_consen 154 RGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAV-DLATGEKLWSKP--I-S-GIYSL-PSVDGG---TLYVTSSDGR 223 (238)
T ss_dssp -SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEE-ETTTTEEEEEEC--S-S--ECEC-EECCCT---EEEEEETTTE
T ss_pred CCCcceeeecccccceEEECC-EEEEEcCCCeEEEE-ECCCCCEEEEec--C-C-CccCC-ceeeCC---EEEEEeCCCE
Confidence 2 1222233345 77777778876666 999999765432 1 1 12221 345565 7888889999
Q ss_pred EEEEecCCCCC
Q 019349 251 LHVFSPGFAIN 261 (342)
Q Consensus 251 i~vwd~~~~~~ 261 (342)
|..||+++++.
T Consensus 224 l~~~d~~tG~~ 234 (238)
T PF13360_consen 224 LYALDLKTGKV 234 (238)
T ss_dssp EEEEETTTTEE
T ss_pred EEEEECCCCCE
Confidence 99999988753
No 250
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.10 E-value=1.5e-09 Score=109.47 Aligned_cols=168 Identities=12% Similarity=0.160 Sum_probs=120.2
Q ss_pred CCCeEEEEECCCCcEEEEEecC--CceEEEEEcCCe--EEE-EECCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCc
Q 019349 73 SPRRLCLFNTTTGTALRELNFL--TSILAVRLNKKR--LVI-VLREKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNA 147 (342)
Q Consensus 73 ~d~~i~iwd~~~~~~~~~~~~~--~~v~~i~~~~~~--~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (342)
.|+.+++|....++.+..+... ..|..+.|+.++ +-+ ..||.+.+|... .+.....+.|. .+...+.+-+
T Consensus 2228 ~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchn--k~~~Df~Fi~-- 2302 (2439)
T KOG1064|consen 2228 QDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHN--KALSDFRFIG-- 2302 (2439)
T ss_pred CCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-CcceeccccCC--ccccceeeee--
Confidence 4999999999999988877643 467777776543 333 338999999987 44444444332 2333333322
Q ss_pred cEEEEeCCC-CccEEEEEEccCCc---eeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcC
Q 019349 148 CFLAVPAST-TKGSVLVYNVMELH---SHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTY 223 (342)
Q Consensus 148 ~~l~~~~~~-~~g~i~iwd~~~~~---~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~ 223 (342)
..++++|.. .++.+.+||..-.. .+. .+|.+.++++++-|.-++|+|||.+|.+ ++||++..++++.++.
T Consensus 2303 s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~qllisggr~G~v-~l~D~rqrql~h~~~~--- 2376 (2439)
T KOG1064|consen 2303 SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKHQLLISGGRKGEV-CLFDIRQRQLRHTFQA--- 2376 (2439)
T ss_pred hhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcCcceEEEecCCcCcE-EEeehHHHHHHHHhhh---
Confidence 355555532 46789999964322 333 7899999999999999999999999985 7999998887766632
Q ss_pred ceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCC
Q 019349 224 PSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQR 263 (342)
Q Consensus 224 ~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~ 263 (342)
+. ... +|++|+..|.|+||++......+
T Consensus 2377 --------~~-~~~---~f~~~ss~g~ikIw~~s~~~ll~ 2404 (2439)
T KOG1064|consen 2377 --------LD-TRE---YFVTGSSEGNIKIWRLSEFGLLH 2404 (2439)
T ss_pred --------hh-hhh---eeeccCcccceEEEEccccchhh
Confidence 33 334 89999999999999998775433
No 251
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.10 E-value=2.7e-08 Score=93.06 Aligned_cols=216 Identities=10% Similarity=0.052 Sum_probs=127.9
Q ss_pred CCCCeEEEEEcCCCCEEEEEcC-Cc---EEEEeCCCCcEEEEEe-eCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEE
Q 019349 6 SSYPVFFVSFNQDNSGFALSTK-DG---FKIFDSSTGRLCYERA-VGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLF 80 (342)
Q Consensus 6 ~~~~V~~l~fs~d~~~la~g~~-~g---~~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iw 80 (342)
....+.+.+|||||+.|+..+. ++ +.+||+.+++...-.. .+......+.++++.++++.... ....|.++
T Consensus 216 ~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~----g~~~Iy~~ 291 (448)
T PRK04792 216 SPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKD----GQPEIYVV 291 (448)
T ss_pred CCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCC----CCeEEEEE
Confidence 3456788999999999876543 32 5777888876432221 22233457788888887764320 12358888
Q ss_pred ECCCCcEEEEEecCCceEEEEEcCCe--EEEEEC----CeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeC
Q 019349 81 NTTTGTALRELNFLTSILAVRLNKKR--LVIVLR----EKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPA 154 (342)
Q Consensus 81 d~~~~~~~~~~~~~~~v~~i~~~~~~--~~~~~d----~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 154 (342)
|+.+++...-...........|+++. ++..++ ..|+++|+.+++..+ +...... ....+++|++..+++.+
T Consensus 292 dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~g~~--~~~~~~SpDG~~l~~~~ 368 (448)
T PRK04792 292 DIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-LTFEGEQ--NLGGSITPDGRSMIMVN 368 (448)
T ss_pred ECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-EecCCCC--CcCeeECCCCCEEEEEE
Confidence 99887654332333345667888774 444442 368888888776432 2211111 12235567777888765
Q ss_pred CCCcc--EEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCC-c-EEEEEEcCCCeeEEEeccCcCceeEEEE
Q 019349 155 STTKG--SVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQG-T-IIRVFLVSEATKSYSFRRGTYPSTIFSL 230 (342)
Q Consensus 155 ~~~~g--~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg-~-~irlwd~~~~~~~~~~~~~~~~~~v~~l 230 (342)
. .++ .|.++|+.+++.. .+.... ......|+|||++|+..+.++ . .+.+++. +|.....+..+ .+.+...
T Consensus 369 ~-~~g~~~I~~~dl~~g~~~-~lt~~~-~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~--~g~~~~p 442 (448)
T PRK04792 369 R-TNGKFNIARQDLETGAMQ-VLTSTR-LDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLPAG--QGEVKSP 442 (448)
T ss_pred e-cCCceEEEEEECCCCCeE-EccCCC-CCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEECcCC--CCCcCCC
Confidence 4 344 4566788777643 232221 122447999999988876543 2 2456676 56555555322 3346677
Q ss_pred EEec
Q 019349 231 SFGQ 234 (342)
Q Consensus 231 ~fs~ 234 (342)
+|+|
T Consensus 443 ~Wsp 446 (448)
T PRK04792 443 AWSP 446 (448)
T ss_pred ccCC
Confidence 8876
No 252
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.09 E-value=1.2e-06 Score=75.68 Aligned_cols=244 Identities=13% Similarity=0.136 Sum_probs=147.9
Q ss_pred CCCCeEEEEEcCCCCEEEEEcCC----cEEEEeCC--CCcEEEEEe----eCCEEEEEEcCCCCeEEEEcCCCCCCCCCC
Q 019349 6 SSYPVFFVSFNQDNSGFALSTKD----GFKIFDSS--TGRLCYERA----VGAFSIVEMLYSSSLLAIVGAGEQPSLSPR 75 (342)
Q Consensus 6 ~~~~V~~l~fs~d~~~la~g~~~----g~~v~d~~--~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~ 75 (342)
..+.++.|+|+|++++|.++-.. ++--|.++ +|++.+-.+ ..+-..+++..+..+++.+.- ..+
T Consensus 38 ~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY------~~g 111 (346)
T COG2706 38 ELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANY------HSG 111 (346)
T ss_pred ccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEc------cCc
Confidence 34567899999999999877543 35555554 476654322 233356777777778776664 468
Q ss_pred eEEEEECCC-CcE---EEEEecCCc----------eEEEEEcCCeEEEEE----CCeEEEEECCCCceeeEEeCC-CCCc
Q 019349 76 RLCLFNTTT-GTA---LRELNFLTS----------ILAVRLNKKRLVIVL----REKTYIYDANTLAILDTIDTV-PNLK 136 (342)
Q Consensus 76 ~i~iwd~~~-~~~---~~~~~~~~~----------v~~i~~~~~~~~~~~----d~~i~i~d~~~~~~~~~~~~~-~~~~ 136 (342)
.|.++-++. |.. +..+.+... +....+.|++.+++. .++|.+|++.++++...-... ....
T Consensus 112 ~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~ 191 (346)
T COG2706 112 SVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGA 191 (346)
T ss_pred eEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCC
Confidence 899998865 332 233343333 677778887644433 579999999987654322111 1112
Q ss_pred eEEEEeeCCCccEEEEeCCCCccEEEEEEccCC-c---eeEEE---ec---ccCCeeEEEECCCCCEEEEEeCCCcEEEE
Q 019349 137 GLCAFSPSLNACFLAVPASTTKGSVLVYNVMEL-H---SHCEI---DA---HQAPLAAIVLSSNGMYIATASEQGTIIRV 206 (342)
Q Consensus 137 ~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~-~---~~~~~---~~---h~~~v~~i~~s~dg~~lat~s~dg~~irl 206 (342)
+---+.++|++++..+..- -+++|.+|..... . .++++ +. -......|.+++||++|.++-.--..|-+
T Consensus 192 GPRHi~FHpn~k~aY~v~E-L~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~ 270 (346)
T COG2706 192 GPRHIVFHPNGKYAYLVNE-LNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAV 270 (346)
T ss_pred CcceEEEcCCCcEEEEEec-cCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEE
Confidence 2223344555555444433 5899999998763 2 22222 21 13456789999999999987543334567
Q ss_pred EEcCCC-eeEEEeccCcCce-eEEEEEEecCCCcccEEEEEeCC-CcEEEEecCCC
Q 019349 207 FLVSEA-TKSYSFRRGTYPS-TIFSLSFGQSMQFQDILVATSSS-GSLHVFSPGFA 259 (342)
Q Consensus 207 wd~~~~-~~~~~~~~~~~~~-~v~~l~fs~d~~~~~~l~~~s~d-g~i~vwd~~~~ 259 (342)
|.+... .++.........+ .-+...|+|+++ +|+++..+ .+|.+|.++..
T Consensus 271 f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~---~Liaa~q~sd~i~vf~~d~~ 323 (346)
T COG2706 271 FSVDPDGGKLELVGITPTEGQFPRDFNINPSGR---FLIAANQKSDNITVFERDKE 323 (346)
T ss_pred EEEcCCCCEEEEEEEeccCCcCCccceeCCCCC---EEEEEccCCCcEEEEEEcCC
Confidence 776532 2222221111111 256788999999 78777765 46999988654
No 253
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.08 E-value=7.5e-08 Score=89.91 Aligned_cols=217 Identities=13% Similarity=0.071 Sum_probs=128.9
Q ss_pred CCCCCeEEEEEcCCCCEEEEEcC-Cc---EEEEeCCCCcEEEEEe-eCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEE
Q 019349 5 SSSYPVFFVSFNQDNSGFALSTK-DG---FKIFDSSTGRLCYERA-VGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCL 79 (342)
Q Consensus 5 ~~~~~V~~l~fs~d~~~la~g~~-~g---~~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~i 79 (342)
.+...+.+.+|+|||+.|+..+. ++ +.+||+.+++...-.. .+......+.++++.+++..... .+..|.+
T Consensus 196 ~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~----g~~~Iy~ 271 (430)
T PRK00178 196 QSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKD----GNPEIYV 271 (430)
T ss_pred cCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccC----CCceEEE
Confidence 34567889999999999876543 22 5778998885432222 22333467778888887654310 1347899
Q ss_pred EECCCCcEEEEEecCCceEEEEEcCCe--EEEEEC----CeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEe
Q 019349 80 FNTTTGTALRELNFLTSILAVRLNKKR--LVIVLR----EKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVP 153 (342)
Q Consensus 80 wd~~~~~~~~~~~~~~~v~~i~~~~~~--~~~~~d----~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 153 (342)
||+.+++...-...........|+++. ++..++ ..|+++++.+++..+ +...... .....++|++..+++.
T Consensus 272 ~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~-lt~~~~~--~~~~~~Spdg~~i~~~ 348 (430)
T PRK00178 272 MDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAER-VTFVGNY--NARPRLSADGKTLVMV 348 (430)
T ss_pred EECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-eecCCCC--ccceEECCCCCEEEEE
Confidence 999887654322233345556787763 444442 268888988776432 2221111 1223456777788877
Q ss_pred CCCCcc--EEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCC--cEEEEEEcCCCeeEEEeccCcCceeEEE
Q 019349 154 ASTTKG--SVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQG--TIIRVFLVSEATKSYSFRRGTYPSTIFS 229 (342)
Q Consensus 154 ~~~~~g--~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg--~~irlwd~~~~~~~~~~~~~~~~~~v~~ 229 (342)
.. .++ .|.+||+.+++.. .+.. ........|+|||++|+..+.++ ..+.++++. |.....+.. ..+.+..
T Consensus 349 ~~-~~~~~~l~~~dl~tg~~~-~lt~-~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~-g~~~~~l~~--~~g~~~~ 422 (430)
T PRK00178 349 HR-QDGNFHVAAQDLQRGSVR-ILTD-TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSIN-GRVRLPLPT--AQGEVRE 422 (430)
T ss_pred Ec-cCCceEEEEEECCCCCEE-EccC-CCCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEECcC--CCCCcCC
Confidence 53 233 5888999887643 2321 22223568999999998877653 224566764 443334432 2334666
Q ss_pred EEEec
Q 019349 230 LSFGQ 234 (342)
Q Consensus 230 l~fs~ 234 (342)
.+|+|
T Consensus 423 p~ws~ 427 (430)
T PRK00178 423 PSWSP 427 (430)
T ss_pred CccCC
Confidence 67776
No 254
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.06 E-value=3.2e-07 Score=85.67 Aligned_cols=175 Identities=14% Similarity=0.038 Sum_probs=109.7
Q ss_pred eEEEEECCCCcEEEEEecCCceEEEEEcCCeE--EEEE--C--CeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccE
Q 019349 76 RLCLFNTTTGTALRELNFLTSILAVRLNKKRL--VIVL--R--EKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACF 149 (342)
Q Consensus 76 ~i~iwd~~~~~~~~~~~~~~~v~~i~~~~~~~--~~~~--d--~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (342)
.|.++|...+....-......+....|+|++. +... + ..|++||+.+++... +..... ......++|++..
T Consensus 180 ~l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g--~~~~~~~SpDG~~ 256 (430)
T PRK00178 180 TLQRSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEG--LNGAPAWSPDGSK 256 (430)
T ss_pred EEEEECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCC--CcCCeEECCCCCE
Confidence 58888887655433334556788889988753 3333 2 379999998875432 221111 1234567788888
Q ss_pred EEEeCC-CCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCC-Cc-EEEEEEcCCCeeEEEeccCcCcee
Q 019349 150 LAVPAS-TTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQ-GT-IIRVFLVSEATKSYSFRRGTYPST 226 (342)
Q Consensus 150 l~~~~~-~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~d-g~-~irlwd~~~~~~~~~~~~~~~~~~ 226 (342)
|++... +.+..|.+||+.+++.. .+..+........|+|||+.|+..+.. |. -|.++|+.+++.. .+... ...
T Consensus 257 la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~-~lt~~--~~~ 332 (430)
T PRK00178 257 LAFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAE-RVTFV--GNY 332 (430)
T ss_pred EEEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecC--CCC
Confidence 875432 12336888999887643 455555566778999999998877653 22 2456788777642 22111 112
Q ss_pred EEEEEEecCCCcccEEEEEeCC-C--cEEEEecCCCC
Q 019349 227 IFSLSFGQSMQFQDILVATSSS-G--SLHVFSPGFAI 260 (342)
Q Consensus 227 v~~l~fs~d~~~~~~l~~~s~d-g--~i~vwd~~~~~ 260 (342)
....+|+||++ +|+..+.+ + .|.+||++++.
T Consensus 333 ~~~~~~Spdg~---~i~~~~~~~~~~~l~~~dl~tg~ 366 (430)
T PRK00178 333 NARPRLSADGK---TLVMVHRQDGNFHVAAQDLQRGS 366 (430)
T ss_pred ccceEECCCCC---EEEEEEccCCceEEEEEECCCCC
Confidence 33568999999 78777653 3 47888887654
No 255
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.06 E-value=1.4e-07 Score=87.63 Aligned_cols=212 Identities=15% Similarity=0.095 Sum_probs=130.1
Q ss_pred EEEEeCCCCcEE-EEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEEEEEecCCceEEEEEcCCe--
Q 019349 30 FKIFDSSTGRLC-YERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKR-- 106 (342)
Q Consensus 30 ~~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~i~~~~~~-- 106 (342)
+.++|.+..... .......+....+.++++.++++.... ....|.+||+.+++......+...+..+.|+++.
T Consensus 172 l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~----~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~ 247 (417)
T TIGR02800 172 LQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFES----GKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSK 247 (417)
T ss_pred EEEEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEcCC----CCcEEEEEECCCCCEEEeecCCCCccceEECCCCCE
Confidence 456666543222 221222344556778888888776421 1368999999988765544455566678888875
Q ss_pred EEEEE--C--CeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCC-CCccEEEEEEccCCceeEEEecccCC
Q 019349 107 LVIVL--R--EKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPAS-TTKGSVLVYNVMELHSHCEIDAHQAP 181 (342)
Q Consensus 107 ~~~~~--d--~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~g~i~iwd~~~~~~~~~~~~h~~~ 181 (342)
+++.. + ..|++||+.+++.. .+..+.. ......+++++..|++.+. .....|.++|+.+++. ..+..+...
T Consensus 248 l~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~--~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~-~~l~~~~~~ 323 (417)
T TIGR02800 248 LAVSLSKDGNPDIYVMDLDGKQLT-RLTNGPG--IDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV-RRLTFRGGY 323 (417)
T ss_pred EEEEECCCCCccEEEEECCCCCEE-ECCCCCC--CCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCE-EEeecCCCC
Confidence 44333 2 36999999877543 2222221 1123345677777776542 1123688888877654 344445566
Q ss_pred eeEEEECCCCCEEEEEeCCC---cEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCc---EEEEe
Q 019349 182 LAAIVLSSNGMYIATASEQG---TIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGS---LHVFS 255 (342)
Q Consensus 182 v~~i~~s~dg~~lat~s~dg---~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~---i~vwd 255 (342)
+....|+|||++|+.++.++ . |.+||+.++.. ..+... ......+|+||++ +|+..+.++. +++.+
T Consensus 324 ~~~~~~spdg~~i~~~~~~~~~~~-i~~~d~~~~~~-~~l~~~---~~~~~p~~spdg~---~l~~~~~~~~~~~l~~~~ 395 (417)
T TIGR02800 324 NASPSWSPDGDLIAFVHREGGGFN-IAVMDLDGGGE-RVLTDT---GLDESPSFAPNGR---MILYATTRGGRGVLGLVS 395 (417)
T ss_pred ccCeEECCCCCEEEEEEccCCceE-EEEEeCCCCCe-EEccCC---CCCCCceECCCCC---EEEEEEeCCCcEEEEEEE
Confidence 77889999999999988775 4 46889887653 222211 1234568999998 7887776653 45555
Q ss_pred cC
Q 019349 256 PG 257 (342)
Q Consensus 256 ~~ 257 (342)
..
T Consensus 396 ~~ 397 (417)
T TIGR02800 396 TD 397 (417)
T ss_pred CC
Confidence 43
No 256
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.06 E-value=9.8e-09 Score=93.04 Aligned_cols=177 Identities=14% Similarity=0.175 Sum_probs=135.2
Q ss_pred CCeEEEEECCCCcEEEEEecC-CceEEEEEcCCe-EEEEE--CCeEEEEECCCCceeeEEeCCCC----C-----ceEEE
Q 019349 74 PRRLCLFNTTTGTALRELNFL-TSILAVRLNKKR-LVIVL--REKTYIYDANTLAILDTIDTVPN----L-----KGLCA 140 (342)
Q Consensus 74 d~~i~iwd~~~~~~~~~~~~~-~~v~~i~~~~~~-~~~~~--d~~i~i~d~~~~~~~~~~~~~~~----~-----~~~~~ 140 (342)
...|.-.|+.+|+.+.-+... +.+..+..++.+ ++.++ ++.|..||-++...+..+....+ + ..+.+
T Consensus 154 g~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTa 233 (703)
T KOG2321|consen 154 GSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTA 233 (703)
T ss_pred CcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceE
Confidence 357888899999988887766 478888888754 44443 78999999998877766644332 1 23778
Q ss_pred EeeCCCccEEEEeCCCCccEEEEEEccCCceeEEE-ecccCCeeEEEECCCC--CEEEEEeCCCcEEEEEEcCCCeeEEE
Q 019349 141 FSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEI-DAHQAPLAAIVLSSNG--MYIATASEQGTIIRVFLVSEATKSYS 217 (342)
Q Consensus 141 ~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~-~~h~~~v~~i~~s~dg--~~lat~s~dg~~irlwd~~~~~~~~~ 217 (342)
+.+..++..++++. ..|.|.|||+++.+++..- ....-||..+.|.+.+ +.|+|. |..++||||-.+|+....
T Consensus 234 l~F~d~gL~~aVGt--s~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~--Dk~~~kiWd~~~Gk~~as 309 (703)
T KOG2321|consen 234 LKFRDDGLHVAVGT--STGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM--DKRILKIWDECTGKPMAS 309 (703)
T ss_pred EEecCCceeEEeec--cCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEec--chHHhhhcccccCCceee
Confidence 89988888998887 5899999999998876432 2344689999998763 455554 556789999999998877
Q ss_pred eccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCC
Q 019349 218 FRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAI 260 (342)
Q Consensus 218 ~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~ 260 (342)
+... ..++.+++-|++. ++.++-+++.++.|=+..--
T Consensus 310 iEpt---~~lND~C~~p~sG---m~f~Ane~~~m~~yyiP~LG 346 (703)
T KOG2321|consen 310 IEPT---SDLNDFCFVPGSG---MFFTANESSKMHTYYIPSLG 346 (703)
T ss_pred cccc---CCcCceeeecCCc---eEEEecCCCcceeEEccccC
Confidence 6432 3488999999988 99999999999988776543
No 257
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.02 E-value=2e-06 Score=76.78 Aligned_cols=256 Identities=12% Similarity=0.078 Sum_probs=146.6
Q ss_pred CcEEEEeCCCCcEEEEEeeCCEEEEEEcCCCCeEEEEcCCCCC---CCCCCeEEEEECCCCcEEEEEecCCceE------
Q 019349 28 DGFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQP---SLSPRRLCLFNTTTGTALRELNFLTSIL------ 98 (342)
Q Consensus 28 ~g~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~---~~~d~~i~iwd~~~~~~~~~~~~~~~v~------ 98 (342)
+.+.+.|.++++++-....+......+.++.+.+.++...... .-.+..|.+||..+.+.+.++..+....
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~~~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~ 106 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPNPVVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTY 106 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCceeECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCc
Confidence 4578999999887765544333222366777777666541000 0136889999999999999998654422
Q ss_pred --EEEEcCCe--EEEEE---CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccC-Cc
Q 019349 99 --AVRLNKKR--LVIVL---REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVME-LH 170 (342)
Q Consensus 99 --~i~~~~~~--~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~-~~ 170 (342)
.+.+++++ ++++. ++.+-+.|+.+++.+.++..+. ...++. .+++. +++.+. ||......+.. ++
T Consensus 107 ~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~--t~e~~-~~~~~~---Dg~~~~v~~d~~g~ 179 (352)
T TIGR02658 107 PWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFP--TANDT-FFMHCR---DGSLAKVGYGTKGN 179 (352)
T ss_pred cceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEE--ecCCc-cEEEee---cCceEEEEecCCCc
Confidence 66777764 44444 6799999999999999998743 222222 22222 222222 34443332221 11
Q ss_pred -eeEE---Eec-----ccCCeeEEEECC-CCCEEEEEeCCCcEEEEEEcCC-----CeeEEEecc-----CcCceeEEEE
Q 019349 171 -SHCE---IDA-----HQAPLAAIVLSS-NGMYIATASEQGTIIRVFLVSE-----ATKSYSFRR-----GTYPSTIFSL 230 (342)
Q Consensus 171 -~~~~---~~~-----h~~~v~~i~~s~-dg~~lat~s~dg~~irlwd~~~-----~~~~~~~~~-----~~~~~~v~~l 230 (342)
...+ +.. ...| .|++ ||+++....+ |++ .+.|+.. .+.+..+.. +..+..+.-+
T Consensus 180 ~~~~~~~vf~~~~~~v~~rP----~~~~~dg~~~~vs~e-G~V-~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~i 253 (352)
T TIGR02658 180 PKIKPTEVFHPEDEYLINHP----AYSNKSGRLVWPTYT-GKI-FQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQV 253 (352)
T ss_pred eEEeeeeeecCCccccccCC----ceEcCCCcEEEEecC-CeE-EEEecCCCcceecceeeeccccccccccCCCcceeE
Confidence 1111 111 1223 4556 8888877776 875 7999533 222222211 1123334559
Q ss_pred EEecCCCcccEEEEEe----------CCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCc
Q 019349 231 SFGQSMQFQDILVATS----------SSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGV 300 (342)
Q Consensus 231 ~fs~d~~~~~~l~~~s----------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (342)
+++|+++ .|.+.. ..+.|.++|.++.+...+ +.-. ...| .+.+.+
T Consensus 254 a~~~dg~---~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~----------i~vG--~~~~----------~iavS~ 308 (352)
T TIGR02658 254 AYHRARD---RIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRK----------IELG--HEID----------SINVSQ 308 (352)
T ss_pred EEcCCCC---EEEEEecCCccccccCCCCEEEEEECCCCeEEEE----------EeCC--Ccee----------eEEECC
Confidence 9999998 777643 125799999887765331 1000 0122 223345
Q ss_pred ccc-EEEEEE-eCCcEEEEEEec
Q 019349 301 KRA-SVSVIT-YNGYFVEYIFSI 321 (342)
Q Consensus 301 ~~~-~l~~~~-~dg~v~~~~~~~ 321 (342)
+++ .|++.+ .++.|.+++...
T Consensus 309 Dgkp~lyvtn~~s~~VsViD~~t 331 (352)
T TIGR02658 309 DAKPLLYALSTGDKTLYIFDAET 331 (352)
T ss_pred CCCeEEEEeCCCCCcEEEEECcC
Confidence 556 788777 578899887543
No 258
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.98 E-value=3.2e-07 Score=85.23 Aligned_cols=178 Identities=8% Similarity=-0.001 Sum_probs=103.8
Q ss_pred CeEEEEECCCCcEEEEEecCCceEEEEEcCCe--EEE--EE--C--CeEEEEECCCCceeeEEeCCCCCceEEEEeeCCC
Q 019349 75 RRLCLFNTTTGTALRELNFLTSILAVRLNKKR--LVI--VL--R--EKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLN 146 (342)
Q Consensus 75 ~~i~iwd~~~~~~~~~~~~~~~v~~i~~~~~~--~~~--~~--d--~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (342)
..|.+.|...+....-......+..=.|+|++ +.+ .+ + ..|++.++.+++..+..... . ......++||
T Consensus 165 ~~l~~~d~dG~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~-g--~~~~p~wSPD 241 (428)
T PRK01029 165 GELWSVDYDGQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQ-G--NQLMPTFSPR 241 (428)
T ss_pred ceEEEEcCCCCCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCC-C--CccceEECCC
Confidence 46778887655443222223455666888883 322 33 2 37899999877543322221 1 2234567788
Q ss_pred ccEEEEeCCC---CccEEEEEEccCC---ceeEEEecccCCeeEEEECCCCCEEEEEeC-CCcEEEEEE--cCC-CeeEE
Q 019349 147 ACFLAVPAST---TKGSVLVYNVMEL---HSHCEIDAHQAPLAAIVLSSNGMYIATASE-QGTIIRVFL--VSE-ATKSY 216 (342)
Q Consensus 147 ~~~l~~~~~~---~~g~i~iwd~~~~---~~~~~~~~h~~~v~~i~~s~dg~~lat~s~-dg~~irlwd--~~~-~~~~~ 216 (342)
+..|++.... .+..+.+|++..+ +.......+.......+|||||+.|+..+. +|. .++|. +.. +....
T Consensus 242 G~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~-~~ly~~~~~~~g~~~~ 320 (428)
T PRK01029 242 KKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGR-PRIYIMQIDPEGQSPR 320 (428)
T ss_pred CCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCC-ceEEEEECcccccceE
Confidence 8888876521 1334555777653 333333233334567899999999887764 554 35664 332 22233
Q ss_pred EeccCcCceeEEEEEEecCCCcccEEEEEeCC---CcEEEEecCCCCC
Q 019349 217 SFRRGTYPSTIFSLSFGQSMQFQDILVATSSS---GSLHVFSPGFAIN 261 (342)
Q Consensus 217 ~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~d---g~i~vwd~~~~~~ 261 (342)
.+... ...+...+||||++ +|+..+.+ ..|++||+++++.
T Consensus 321 ~lt~~--~~~~~~p~wSPDG~---~Laf~~~~~g~~~I~v~dl~~g~~ 363 (428)
T PRK01029 321 LLTKK--YRNSSCPAWSPDGK---KIAFCSVIKGVRQICVYDLATGRD 363 (428)
T ss_pred EeccC--CCCccceeECCCCC---EEEEEEcCCCCcEEEEEECCCCCe
Confidence 33221 23456789999999 88876553 3699999987654
No 259
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.98 E-value=4.1e-07 Score=81.68 Aligned_cols=245 Identities=12% Similarity=0.107 Sum_probs=151.0
Q ss_pred CCCCeEEEEEcCCCCEEEEEcCCcEEEEeCCCCcEEEEEeeCCEEEEEEcCCCCeEEEEcCCCC--------CCCCCCeE
Q 019349 6 SSYPVFFVSFNQDNSGFALSTKDGFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQ--------PSLSPRRL 77 (342)
Q Consensus 6 ~~~~V~~l~fs~d~~~la~g~~~g~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~--------~~~~d~~i 77 (342)
..-++..++|||.|++|+.....++.+|....+..+.......+..+.+.+..+++.+-..... |...++.+
T Consensus 31 ~~~p~~~~~~SP~G~~l~~~~~~~V~~~~g~~~~~l~~~~~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~ 110 (561)
T COG5354 31 ENWPVAYVSESPLGTYLFSEHAAGVECWGGPSKAKLVRFRHPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNV 110 (561)
T ss_pred cCcchhheeecCcchheehhhccceEEccccchhheeeeecCCceecccCcccceeeeeccCCccChhhccCCccccCce
Confidence 3457889999999999999999999999988776555555566777777777777765443211 12345689
Q ss_pred EEEECCCCcEEEEEecCC-c--eE-EEEEcCCeEEE--EECCeEEEEECCCCcee-eEEeCCCCCceEEEEeeCCC--cc
Q 019349 78 CLFNTTTGTALRELNFLT-S--IL-AVRLNKKRLVI--VLREKTYIYDANTLAIL-DTIDTVPNLKGLCAFSPSLN--AC 148 (342)
Q Consensus 78 ~iwd~~~~~~~~~~~~~~-~--v~-~i~~~~~~~~~--~~d~~i~i~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~ 148 (342)
.+||..+|..+..+.... + .. -+.|+-+..++ ...+.++|+++ ++..- ..+.. -.+.++..++.+|. ..
T Consensus 111 ~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~-t~n~~~~p~~~-lr~~gi~dFsisP~~n~~ 188 (561)
T COG5354 111 FVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSSLYIHEI-TDNIEEHPFKN-LRPVGILDFSISPEGNHD 188 (561)
T ss_pred eEEeccCceeEeeccccCCcccccceeeeeecchhhhhhccCeEEEEec-CCccccCchhh-ccccceeeEEecCCCCCc
Confidence 999999999998876543 2 22 23444443333 34789999997 33211 11111 11345555555543 33
Q ss_pred EEEEeC---CCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeC-----------CCcEEEEEEcCCCee
Q 019349 149 FLAVPA---STTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASE-----------QGTIIRVFLVSEATK 214 (342)
Q Consensus 149 ~l~~~~---~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~-----------dg~~irlwd~~~~~~ 214 (342)
.||+=. ....+++++|.+..+..+.+-.-.+..=..+.|.+.|++|+.--. ..+ +.|++++....
T Consensus 189 ~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesn-Lyl~~~~e~~i 267 (561)
T COG5354 189 ELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESN-LYLLRITERSI 267 (561)
T ss_pred eEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccce-EEEEeeccccc
Confidence 344311 115789999999876655432222222245778888887664211 112 35666653222
Q ss_pred EEEeccCcCceeEEEEEEecCCCcccEEEEEe--CCCcEEEEecCCC
Q 019349 215 SYSFRRGTYPSTIFSLSFGQSMQFQDILVATS--SSGSLHVFSPGFA 259 (342)
Q Consensus 215 ~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s--~dg~i~vwd~~~~ 259 (342)
..+. ...++|...+|+|.++ .+++.+ .+-++.++|++.+
T Consensus 268 ~V~~---~~~~pVhdf~W~p~S~---~F~vi~g~~pa~~s~~~lr~N 308 (561)
T COG5354 268 PVEK---DLKDPVHDFTWEPLSS---RFAVISGYMPASVSVFDLRGN 308 (561)
T ss_pred ceec---cccccceeeeecccCC---ceeEEecccccceeecccccc
Confidence 1111 1245699999999987 666655 6778999998875
No 260
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.96 E-value=8.7e-07 Score=80.49 Aligned_cols=232 Identities=11% Similarity=0.173 Sum_probs=146.8
Q ss_pred EEEEEcCCCCEEEEEcCCcEEEEeCCCCcEE-EEEeeCCEEEEEEcCCC--CeEEEEcCCCCCCCCCCeEEEEECCCCc-
Q 019349 11 FFVSFNQDNSGFALSTKDGFKIFDSSTGRLC-YERAVGAFSIVEMLYSS--SLLAIVGAGEQPSLSPRRLCLFNTTTGT- 86 (342)
Q Consensus 11 ~~l~fs~d~~~la~g~~~g~~v~d~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~d~~i~iwd~~~~~- 86 (342)
.+.+|++|..+.|=-..+.+.+|++...+.. ..++..++....+.+.+ ..+++-.-+..+ ....|+||...-..
T Consensus 129 W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kG--aPa~vri~~~~~~~~ 206 (566)
T KOG2315|consen 129 WVPQFSIDESLAARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKG--APASVRIYKYPEEGQ 206 (566)
T ss_pred cccccccchhhhhhhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEccCCCC--CCcEEEEeccccccc
Confidence 5889999988654444566899998876443 33455666666665553 345443332222 47889999875221
Q ss_pred --EEEEEe-cCCceEEEEEcCC---eEEEEE------------CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCcc
Q 019349 87 --ALRELN-FLTSILAVRLNKK---RLVIVL------------REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNAC 148 (342)
Q Consensus 87 --~~~~~~-~~~~v~~i~~~~~---~~~~~~------------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (342)
.+..-. +...-..+.|++. .+++++ +.++++++++.....-.+.. . ..+.++.+++++.
T Consensus 207 ~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k-~--GPVhdv~W~~s~~ 283 (566)
T KOG2315|consen 207 HQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLK-E--GPVHDVTWSPSGR 283 (566)
T ss_pred cchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCC-C--CCceEEEECCCCC
Confidence 111111 1223334556543 233332 24788888874443333321 2 2356666666664
Q ss_pred EE-EEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCC---CcEEEEEEcCCCeeEEEeccCcCc
Q 019349 149 FL-AVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQ---GTIIRVFLVSEATKSYSFRRGTYP 224 (342)
Q Consensus 149 ~l-~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~d---g~~irlwd~~~~~~~~~~~~~~~~ 224 (342)
-+ ++-|. .--.+.|+|++. .++..+ ..++=+++-|+|.|++|+.|+-+ |. |-+||+.+.+++..+...
T Consensus 284 EF~VvyGf-MPAkvtifnlr~-~~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~-mEvwDv~n~K~i~~~~a~--- 355 (566)
T KOG2315|consen 284 EFAVVYGF-MPAKVTIFNLRG-KPVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGD-MEVWDVPNRKLIAKFKAA--- 355 (566)
T ss_pred EEEEEEec-ccceEEEEcCCC-CEeEeC--CCCCccceEECCCCCEEEEeecCCCCCc-eEEEeccchhhccccccC---
Confidence 33 33454 567899999874 455554 35677899999999999999865 66 479999998888877532
Q ss_pred eeEEEEEEecCCCcccEEEEEeC------CCcEEEEecCCC
Q 019349 225 STIFSLSFGQSMQFQDILVATSS------SGSLHVFSPGFA 259 (342)
Q Consensus 225 ~~v~~l~fs~d~~~~~~l~~~s~------dg~i~vwd~~~~ 259 (342)
.-+-..|+|||+ +|++++. |+.++||+....
T Consensus 356 -~tt~~eW~PdGe---~flTATTaPRlrvdNg~KiwhytG~ 392 (566)
T KOG2315|consen 356 -NTTVFEWSPDGE---YFLTATTAPRLRVDNGIKIWHYTGS 392 (566)
T ss_pred -CceEEEEcCCCc---EEEEEeccccEEecCCeEEEEecCc
Confidence 234468999999 7877764 789999998654
No 261
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.95 E-value=8.8e-07 Score=82.94 Aligned_cols=212 Identities=13% Similarity=0.001 Sum_probs=122.2
Q ss_pred EEEeCCCCcEE-EEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEEEEEecCCceEEEEEcCCe--E
Q 019349 31 KIFDSSTGRLC-YERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKR--L 107 (342)
Q Consensus 31 ~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~i~~~~~~--~ 107 (342)
.++|.+..... .......+....+.++++.+++++... ....|.+||+.+++.......+.......|+|+. +
T Consensus 201 ~i~d~dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~----g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~L 276 (448)
T PRK04792 201 MIADYDGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFEN----RKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKL 276 (448)
T ss_pred EEEeCCCCCceEeecCCCcccCceECCCCCEEEEEEecC----CCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEE
Confidence 44465444221 222223455567888888888876421 1347999999888754333334444567888875 3
Q ss_pred EEEE--CC--eEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCc--cEEEEEEccCCceeEEEecccCC
Q 019349 108 VIVL--RE--KTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTK--GSVLVYNVMELHSHCEIDAHQAP 181 (342)
Q Consensus 108 ~~~~--d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--g~i~iwd~~~~~~~~~~~~h~~~ 181 (342)
+++. ++ .|+++|+.+++.. .+..+.. .....+++||+..+++.+. .+ ..|.++|+.+++... +..+...
T Consensus 277 a~~~~~~g~~~Iy~~dl~tg~~~-~lt~~~~--~~~~p~wSpDG~~I~f~s~-~~g~~~Iy~~dl~~g~~~~-Lt~~g~~ 351 (448)
T PRK04792 277 ALVLSKDGQPEIYVVDIATKALT-RITRHRA--IDTEPSWHPDGKSLIFTSE-RGGKPQIYRVNLASGKVSR-LTFEGEQ 351 (448)
T ss_pred EEEEeCCCCeEEEEEECCCCCeE-ECccCCC--CccceEECCCCCEEEEEEC-CCCCceEEEEECCCCCEEE-EecCCCC
Confidence 3333 44 5888899877543 3322211 2234456778888876653 23 356667777766432 2222222
Q ss_pred eeEEEECCCCCEEEEEeCCCcE--EEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCC-Cc--EEEEec
Q 019349 182 LAAIVLSSNGMYIATASEQGTI--IRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSS-GS--LHVFSP 256 (342)
Q Consensus 182 v~~i~~s~dg~~lat~s~dg~~--irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~d-g~--i~vwd~ 256 (342)
....+|+|||++|+..+.++.. |.++|+.+++. ..+.... .....+|+||++ +|+..+.+ +. ++++++
T Consensus 352 ~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~-~~lt~~~---~d~~ps~spdG~---~I~~~~~~~g~~~l~~~~~ 424 (448)
T PRK04792 352 NLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAM-QVLTSTR---LDESPSVAPNGT---MVIYSTTYQGKQVLAAVSI 424 (448)
T ss_pred CcCeeECCCCCEEEEEEecCCceEEEEEECCCCCe-EEccCCC---CCCCceECCCCC---EEEEEEecCCceEEEEEEC
Confidence 3456899999999887664322 23568777754 2332211 112347999998 77666543 33 667776
Q ss_pred CC
Q 019349 257 GF 258 (342)
Q Consensus 257 ~~ 258 (342)
+.
T Consensus 425 ~G 426 (448)
T PRK04792 425 DG 426 (448)
T ss_pred CC
Confidence 43
No 262
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.94 E-value=4.4e-08 Score=85.33 Aligned_cols=101 Identities=18% Similarity=0.127 Sum_probs=79.7
Q ss_pred CccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCC
Q 019349 157 TKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSM 236 (342)
Q Consensus 157 ~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~ 236 (342)
....+.+|....+ +...+-+|-+-+..|+++||+++|+|+..|.. ||+-.....-.+..|--| |..-|..++.-++.
T Consensus 130 D~~~~di~s~~~~-~~~~~lGhvSml~dVavS~D~~~IitaDRDEk-IRvs~ypa~f~IesfclG-H~eFVS~isl~~~~ 206 (390)
T KOG3914|consen 130 DVYSFDILSADSG-RCEPILGHVSMLLDVAVSPDDQFIITADRDEK-IRVSRYPATFVIESFCLG-HKEFVSTISLTDNY 206 (390)
T ss_pred Cceeeeeeccccc-CcchhhhhhhhhheeeecCCCCEEEEecCCce-EEEEecCcccchhhhccc-cHhheeeeeeccCc
Confidence 3556666666553 33456689999999999999999999999987 688777766666666554 34559999998765
Q ss_pred CcccEEEEEeCCCcEEEEecCCCCCCCC
Q 019349 237 QFQDILVATSSSGSLHVFSPGFAINQRR 264 (342)
Q Consensus 237 ~~~~~l~~~s~dg~i~vwd~~~~~~~~~ 264 (342)
.|+++|.|++|++||+..++.+..
T Consensus 207 ----~LlS~sGD~tlr~Wd~~sgk~L~t 230 (390)
T KOG3914|consen 207 ----LLLSGSGDKTLRLWDITSGKLLDT 230 (390)
T ss_pred ----eeeecCCCCcEEEEecccCCcccc
Confidence 599999999999999999987653
No 263
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.91 E-value=4.5e-08 Score=83.74 Aligned_cols=245 Identities=13% Similarity=0.124 Sum_probs=145.6
Q ss_pred CCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcE-----EEEEe-------------cCCceEEEEEcCC---
Q 019349 47 GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTA-----LRELN-------------FLTSILAVRLNKK--- 105 (342)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~-----~~~~~-------------~~~~v~~i~~~~~--- 105 (342)
.-+..+.+.+.++++++... +|.|.++.-..... ..+++ ....|..|.|.++
T Consensus 26 diis~vef~~~Ge~LatGdk-------gGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~ 98 (433)
T KOG1354|consen 26 DIISAVEFDHYGERLATGDK-------GGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNL 98 (433)
T ss_pred cceeeEEeecccceEeecCC-------CCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCc
Confidence 45667888888899887655 57777776432211 11111 1235677777543
Q ss_pred -eEEEEE-CCeEEEEECCCCceee---------------EEe-------------------CCCCCceEEEEeeCCCccE
Q 019349 106 -RLVIVL-REKTYIYDANTLAILD---------------TID-------------------TVPNLKGLCAFSPSLNACF 149 (342)
Q Consensus 106 -~~~~~~-d~~i~i~d~~~~~~~~---------------~~~-------------------~~~~~~~~~~~~~~~~~~~ 149 (342)
.+++.+ |.+|++|.+....... .++ ...+..-+.+++.+.|...
T Consensus 99 a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et 178 (433)
T KOG1354|consen 99 AEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKET 178 (433)
T ss_pred cEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccce
Confidence 344444 8899999985421110 110 0111223456777777777
Q ss_pred EEEeCCCCccEEEEEEccCCce---eEEEecc-----cCCeeEEEECCC-CCEEEEEeCCCcEEEEEEcCCCe------e
Q 019349 150 LAVPASTTKGSVLVYNVMELHS---HCEIDAH-----QAPLAAIVLSSN-GMYIATASEQGTIIRVFLVSEAT------K 214 (342)
Q Consensus 150 l~~~~~~~~g~i~iwd~~~~~~---~~~~~~h-----~~~v~~i~~s~d-g~~lat~s~dg~~irlwd~~~~~------~ 214 (342)
+.++. |=.|.+|+++-... +.-++.| ..-|++..|+|. -++++-.|..|+ ||+-|++... +
T Consensus 179 ~lSAD---dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGt-IrLcDmR~~aLCd~hsK 254 (433)
T KOG1354|consen 179 FLSAD---DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGT-IRLCDMRQSALCDAHSK 254 (433)
T ss_pred Eeecc---ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCc-EEEeechhhhhhcchhh
Confidence 76653 78899999864332 2223333 345889999994 477888888998 6999998432 1
Q ss_pred EEEecc-CcC-------ceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCC-CCCCCccccccc-----c----c
Q 019349 215 SYSFRR-GTY-------PSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQ-RRGGRTSSILGS-----I----L 276 (342)
Q Consensus 215 ~~~~~~-~~~-------~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~-~~~~~~~~~~~~-----~----~ 276 (342)
+.+.+. +.. -+.|..+.|+++|+ ++++-. --+|++||+.....+ .+.+.+. ++.. + .
T Consensus 255 lfEepedp~~rsffseiIsSISDvKFs~sGr---yilsRD-yltvk~wD~nme~~pv~t~~vh~-~lr~kLc~lYEnD~I 329 (433)
T KOG1354|consen 255 LFEEPEDPSSRSFFSEIISSISDVKFSHSGR---YILSRD-YLTVKLWDLNMEAKPVETYPVHE-YLRSKLCSLYENDAI 329 (433)
T ss_pred hhccccCCcchhhHHHHhhhhhceEEccCCc---EEEEec-cceeEEEeccccCCcceEEeehH-hHHHHHHHHhhccch
Confidence 222111 100 12378899999998 776433 369999999655433 2211111 1111 1 1
Q ss_pred cccccccccccccceeeeccCCCccccEEEEEEeCCcEEEEEEec
Q 019349 277 PESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSI 321 (342)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~~~~ 321 (342)
-+.|.|.|+-.. .++++|+.+..+++|+++.
T Consensus 330 fdKFec~~sg~~--------------~~v~TGsy~n~frvf~~~~ 360 (433)
T KOG1354|consen 330 FDKFECSWSGND--------------SYVMTGSYNNVFRVFNLAR 360 (433)
T ss_pred hheeEEEEcCCc--------------ceEecccccceEEEecCCC
Confidence 133456665544 7899999999999998543
No 264
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.91 E-value=4.7e-09 Score=62.42 Aligned_cols=39 Identities=28% Similarity=0.458 Sum_probs=35.9
Q ss_pred CceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEE
Q 019349 169 LHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFL 208 (342)
Q Consensus 169 ~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd 208 (342)
++++.++.+|.++|++|+|+|++++|++++.|++ |++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~-i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGT-IRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSE-EEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCE-EEEEC
Confidence 3578899999999999999999999999999997 58997
No 265
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.90 E-value=9.4e-07 Score=82.14 Aligned_cols=198 Identities=14% Similarity=0.055 Sum_probs=117.7
Q ss_pred EEEcCCCCe--EEEEcCCCCCCCCCCeEEEEECCCCcEEEEEecCCceEEEEEcCCe--EEEEEC--C--eEEE--EECC
Q 019349 52 VEMLYSSSL--LAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKR--LVIVLR--E--KTYI--YDAN 121 (342)
Q Consensus 52 ~~~~~~~~~--~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~i~~~~~~--~~~~~d--~--~i~i--~d~~ 121 (342)
-.|.++++. +++++... ....|.+.++.+++...-..++.......|+||+ ++...+ + .+++ |++.
T Consensus 190 P~wSPDG~~~~~~y~S~~~----g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~ 265 (428)
T PRK01029 190 PTWMHIGSGFPYLYVSYKL----GVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLE 265 (428)
T ss_pred ceEccCCCceEEEEEEccC----CCceEEEEECCCCCceEeecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecc
Confidence 356677655 33355321 1356888899888765544556666677888885 333332 2 3444 6765
Q ss_pred CC--ceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEE--EccC-CceeEEEecccCCeeEEEECCCCCEEEE
Q 019349 122 TL--AILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVY--NVME-LHSHCEIDAHQAPLAAIVLSSNGMYIAT 196 (342)
Q Consensus 122 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iw--d~~~-~~~~~~~~~h~~~v~~i~~s~dg~~lat 196 (342)
.+ .....+.... .......+++||+..|++.+. .+|...+| ++.. +.....+..+...+....|||||++|+.
T Consensus 266 ~g~~g~~~~lt~~~-~~~~~~p~wSPDG~~Laf~s~-~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf 343 (428)
T PRK01029 266 TGAIGKPRRLLNEA-FGTQGNPSFSPDGTRLVFVSN-KDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAF 343 (428)
T ss_pred cCCCCcceEeecCC-CCCcCCeEECCCCCEEEEEEC-CCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEE
Confidence 42 1222222111 111234567888888887653 35655555 4432 2334445555566788899999999987
Q ss_pred EeCCC--cEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeC---CCcEEEEecCCCCC
Q 019349 197 ASEQG--TIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSS---SGSLHVFSPGFAIN 261 (342)
Q Consensus 197 ~s~dg--~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~---dg~i~vwd~~~~~~ 261 (342)
.+.++ .-|.+||+.+++.. .+..+ ...+....|+||++ +|+..+. ...|+++|++..+.
T Consensus 344 ~~~~~g~~~I~v~dl~~g~~~-~Lt~~--~~~~~~p~wSpDG~---~L~f~~~~~g~~~L~~vdl~~g~~ 407 (428)
T PRK01029 344 CSVIKGVRQICVYDLATGRDY-QLTTS--PENKESPSWAIDSL---HLVYSAGNSNESELYLISLITKKT 407 (428)
T ss_pred EEcCCCCcEEEEEECCCCCeE-EccCC--CCCccceEECCCCC---EEEEEECCCCCceEEEEECCCCCE
Confidence 76542 23579999888653 33222 23466789999998 7765443 24588888876543
No 266
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.89 E-value=1.4e-06 Score=80.34 Aligned_cols=222 Identities=9% Similarity=0.070 Sum_probs=130.3
Q ss_pred CCEEEEEcCCc-EEEEeCCCCcEEEEEeeCCE-EEE----------EEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCc
Q 019349 19 NSGFALSTKDG-FKIFDSSTGRLCYERAVGAF-SIV----------EMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGT 86 (342)
Q Consensus 19 ~~~la~g~~~g-~~v~d~~~~~~~~~~~~~~~-~~~----------~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~ 86 (342)
+..+.+++.++ +.-+|..+|+++.+...... ... ......+.+. ++. .++.+..+|.++|+
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~-v~~------~~g~l~ald~~tG~ 141 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVY-IGS------EKGQVYALNAEDGE 141 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEE-EEc------CCCEEEEEECCCCC
Confidence 44566666655 57889999988766543220 000 0111223333 333 37899999999999
Q ss_pred EEEEEecCCceEE-EEEcCCeEEEEE-CCeEEEEECCCCceeeEEeCCCCCc---eEEEEeeCCCccEEEEeCCCCccEE
Q 019349 87 ALRELNFLTSILA-VRLNKKRLVIVL-REKTYIYDANTLAILDTIDTVPNLK---GLCAFSPSLNACFLAVPASTTKGSV 161 (342)
Q Consensus 87 ~~~~~~~~~~v~~-i~~~~~~~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~g~i 161 (342)
.+.+.+....+.+ ..+..+.+++.. ++.++-+|..+++.+.......... ....-... ++ .++.+. .+|.+
T Consensus 142 ~~W~~~~~~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~-~~-~v~~~~--~~g~v 217 (394)
T PRK11138 142 VAWQTKVAGEALSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATA-FG-GAIVGG--DNGRV 217 (394)
T ss_pred CcccccCCCceecCCEEECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEE-CC-EEEEEc--CCCEE
Confidence 9988877665433 223445555554 7799999999999888775432110 00000001 12 333444 47889
Q ss_pred EEEEccCCceeEEEeccc----C---CeeEEEECC--CCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEE
Q 019349 162 LVYNVMELHSHCEIDAHQ----A---PLAAIVLSS--NGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSF 232 (342)
Q Consensus 162 ~iwd~~~~~~~~~~~~h~----~---~v~~i~~s~--dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~f 232 (342)
..+|..+++.+-..+... . ....+.-+| .+..+..++.+|.+ ..+|..+|+.+.+...+. ...+..
T Consensus 218 ~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l-~ald~~tG~~~W~~~~~~----~~~~~~ 292 (394)
T PRK11138 218 SAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNL-VALDLRSGQIVWKREYGS----VNDFAV 292 (394)
T ss_pred EEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeE-EEEECCCCCEEEeecCCC----ccCcEE
Confidence 999998887654432110 0 011111222 24567777788875 689999999876653221 112222
Q ss_pred ecCCCcccEEEEEeCCCcEEEEecCCCCC
Q 019349 233 GQSMQFQDILVATSSSGSLHVFSPGFAIN 261 (342)
Q Consensus 233 s~d~~~~~~l~~~s~dg~i~vwd~~~~~~ 261 (342)
++. .|..++.+|.++.+|.++++.
T Consensus 293 --~~~---~vy~~~~~g~l~ald~~tG~~ 316 (394)
T PRK11138 293 --DGG---RIYLVDQNDRVYALDTRGGVE 316 (394)
T ss_pred --ECC---EEEEEcCCCeEEEEECCCCcE
Confidence 344 688888999999999887653
No 267
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.88 E-value=3.8e-06 Score=71.64 Aligned_cols=211 Identities=14% Similarity=0.105 Sum_probs=127.8
Q ss_pred CCeEEEEECCCCcEEEEEecCC---ceEE-EEEcCCeEEEEE-CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCcc
Q 019349 74 PRRLCLFNTTTGTALRELNFLT---SILA-VRLNKKRLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNAC 148 (342)
Q Consensus 74 d~~i~iwd~~~~~~~~~~~~~~---~v~~-i~~~~~~~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (342)
+++|..||..+|+.+.+..... .... .......++++. ++.++.||..+++.+..+.......... ....+
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~--~~~~~-- 77 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAP--VVDGG-- 77 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGE--EEETT--
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeecccccccee--eeccc--
Confidence 6799999999999999987632 2222 233666777775 7899999999999998887633322221 22222
Q ss_pred EEEEeCCCCccEEEEEEccCCceeEEE-ecccC---CeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCc
Q 019349 149 FLAVPASTTKGSVLVYNVMELHSHCEI-DAHQA---PLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYP 224 (342)
Q Consensus 149 ~l~~~~~~~~g~i~iwd~~~~~~~~~~-~~h~~---~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~ 224 (342)
.+++.. .++.|..+|..+++.+... ..... .........++..++.+..+|.+ ..+|.++|+.+.+.......
T Consensus 78 ~v~v~~--~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l-~~~d~~tG~~~w~~~~~~~~ 154 (238)
T PF13360_consen 78 RVYVGT--SDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKL-VALDPKTGKLLWKYPVGEPR 154 (238)
T ss_dssp EEEEEE--TTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEE-EEEETTTTEEEEEEESSTT-
T ss_pred cccccc--ceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcE-EEEecCCCcEEEEeecCCCC
Confidence 333333 3679999999999988763 32211 11222233347888888888875 69999999998877543211
Q ss_pred --eeE-------EEEEEecCCCcccEEEEEeCCCc-EEEEecCCCCCCCCCCCccccccccccccccccccccccceeee
Q 019349 225 --STI-------FSLSFGQSMQFQDILVATSSSGS-LHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRN 294 (342)
Q Consensus 225 --~~v-------~~l~fs~d~~~~~~l~~~s~dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (342)
..+ ..+.+. ++ .+..++.++. +.+ |+++++. +|....... .
T Consensus 155 ~~~~~~~~~~~~~~~~~~-~~----~v~~~~~~g~~~~~-d~~tg~~---------------------~w~~~~~~~--~ 205 (238)
T PF13360_consen 155 GSSPISSFSDINGSPVIS-DG----RVYVSSGDGRVVAV-DLATGEK---------------------LWSKPISGI--Y 205 (238)
T ss_dssp SS--EEEETTEEEEEECC-TT----EEEEECCTSSEEEE-ETTTTEE---------------------EEEECSS-E--C
T ss_pred CCcceeeecccccceEEE-CC----EEEEEcCCCeEEEE-ECCCCCE---------------------EEEecCCCc--c
Confidence 111 223333 33 4666777775 555 8887653 121110000 0
Q ss_pred ccCCCccccEEEEEEeCCcEEEEEEec
Q 019349 295 AFPAGVKRASVSVITYNGYFVEYIFSI 321 (342)
Q Consensus 295 ~~~~~~~~~~l~~~~~dg~v~~~~~~~ 321 (342)
. .....++.|++.+.||.++.|++..
T Consensus 206 ~-~~~~~~~~l~~~~~~~~l~~~d~~t 231 (238)
T PF13360_consen 206 S-LPSVDGGTLYVTSSDGRLYALDLKT 231 (238)
T ss_dssp E-CEECCCTEEEEEETTTEEEEEETTT
T ss_pred C-CceeeCCEEEEEeCCCEEEEEECCC
Confidence 0 0122347888888999999886543
No 268
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.87 E-value=1.3e-06 Score=80.54 Aligned_cols=259 Identities=11% Similarity=0.062 Sum_probs=145.7
Q ss_pred CCEEEEEcCCc-EEEEeCCCCcEEEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEEEEEecCCce
Q 019349 19 NSGFALSTKDG-FKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSI 97 (342)
Q Consensus 19 ~~~la~g~~~g-~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v 97 (342)
+..+.+++.++ +.-+|.++|+++.+...............+.+.+ .. .++.|..+|.++|+.+.+.....+.
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v~~~~v~v-~~------~~g~l~ald~~tG~~~W~~~~~~~~ 192 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVVSDGLVLV-HT------SNGMLQALNESDGAVKWTVNLDVPS 192 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEEECCEEEE-EC------CCCEEEEEEccCCCEeeeecCCCCc
Confidence 44566676665 6889999998876654332111111111233333 33 3789999999999999887654221
Q ss_pred E------EEEEcCCeEEEEE-CCeEEEEECCCCceeeEEeCCCCC--c---eEEEEeeCC--CccEEEEeCCCCccEEEE
Q 019349 98 L------AVRLNKKRLVIVL-REKTYIYDANTLAILDTIDTVPNL--K---GLCAFSPSL--NACFLAVPASTTKGSVLV 163 (342)
Q Consensus 98 ~------~i~~~~~~~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~--~---~~~~~~~~~--~~~~l~~~~~~~~g~i~i 163 (342)
. +-....+.+++.. ++.+..+|..+++.+.+....... . ....+...| .+..+...+ .+|.+..
T Consensus 193 ~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~--~~g~l~a 270 (394)
T PRK11138 193 LTLRGESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALA--YNGNLVA 270 (394)
T ss_pred ccccCCCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEE--cCCeEEE
Confidence 1 1112234445544 778999999998877655321110 0 000000111 112344444 4789999
Q ss_pred EEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEE
Q 019349 164 YNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILV 243 (342)
Q Consensus 164 wd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~ 243 (342)
+|..+++.+-..+. .....+.. ++..|..++.+|.+ ..+|..+|+.+.+..... .....+.... ++ +|.
T Consensus 271 ld~~tG~~~W~~~~--~~~~~~~~--~~~~vy~~~~~g~l-~ald~~tG~~~W~~~~~~-~~~~~sp~v~-~g----~l~ 339 (394)
T PRK11138 271 LDLRSGQIVWKREY--GSVNDFAV--DGGRIYLVDQNDRV-YALDTRGGVELWSQSDLL-HRLLTAPVLY-NG----YLV 339 (394)
T ss_pred EECCCCCEEEeecC--CCccCcEE--ECCEEEEEcCCCeE-EEEECCCCcEEEcccccC-CCcccCCEEE-CC----EEE
Confidence 99999987644321 11112222 45677778888885 699999998776543211 1112222222 34 688
Q ss_pred EEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEEEEEEeCCcEEEEEE
Q 019349 244 ATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIF 319 (342)
Q Consensus 244 ~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~~ 319 (342)
.++.+|.|++.|.++++..-+.+. .+. .+++. + ...+++|++++.||.++.+.+
T Consensus 340 v~~~~G~l~~ld~~tG~~~~~~~~--------~~~---~~~s~----------P-~~~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 340 VGDSEGYLHWINREDGRFVAQQKV--------DSS---GFLSE----------P-VVADDKLLIQARDGTVYAITR 393 (394)
T ss_pred EEeCCCEEEEEECCCCCEEEEEEc--------CCC---cceeC----------C-EEECCEEEEEeCCceEEEEeC
Confidence 899999999999887654221000 000 01111 0 012368999999999988753
No 269
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.85 E-value=1.6e-05 Score=69.02 Aligned_cols=220 Identities=14% Similarity=0.149 Sum_probs=142.9
Q ss_pred CCCCeEEEEEcCCCCEEEEEcCC-c-EEEEeCCC-CcEEE----EEeeC----------CEEEEEEcCCCCeEEEEcCCC
Q 019349 6 SSYPVFFVSFNQDNSGFALSTKD-G-FKIFDSST-GRLCY----ERAVG----------AFSIVEMLYSSSLLAIVGAGE 68 (342)
Q Consensus 6 ~~~~V~~l~fs~d~~~la~g~~~-g-~~v~d~~~-~~~~~----~~~~~----------~~~~~~~~~~~~~~~~~~~g~ 68 (342)
...+-..++++++|++|+++.-. | +.++-++. |.+.. ..+.+ +.-...+.++.++++++.-|
T Consensus 87 ~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG- 165 (346)
T COG2706 87 PGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLG- 165 (346)
T ss_pred CCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecC-
Confidence 33444899999999999887543 3 68998754 43211 11111 13345667778888888765
Q ss_pred CCCCCCCeEEEEECCCCcEEEE----EecCCceEEEEEcCCeEEE--EE--CCeEEEEECCCC-ceeeEEe---CC----
Q 019349 69 QPSLSPRRLCLFNTTTGTALRE----LNFLTSILAVRLNKKRLVI--VL--REKTYIYDANTL-AILDTID---TV---- 132 (342)
Q Consensus 69 ~~~~~d~~i~iwd~~~~~~~~~----~~~~~~v~~i~~~~~~~~~--~~--d~~i~i~d~~~~-~~~~~~~---~~---- 132 (342)
-.+|.++++..|+.... +......+-|.|+|++.++ .. +++|.+|..... ..+..++ +-
T Consensus 166 -----~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF 240 (346)
T COG2706 166 -----TDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDF 240 (346)
T ss_pred -----CceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCcccc
Confidence 56889999987764322 2223467889999986444 33 889999998763 2333332 21
Q ss_pred CCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCC--c--eeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEE
Q 019349 133 PNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMEL--H--SHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFL 208 (342)
Q Consensus 133 ~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~--~--~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd 208 (342)
.......++..++++++|.++.+ ....|.++.+... + .+.....+...-+...|+++|++|+.+.+++..|.+|.
T Consensus 241 ~g~~~~aaIhis~dGrFLYasNR-g~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~ 319 (346)
T COG2706 241 TGTNWAAAIHISPDGRFLYASNR-GHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFE 319 (346)
T ss_pred CCCCceeEEEECCCCCEEEEecC-CCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEE
Confidence 22345678888999999999887 4668999887543 2 22233345566788999999999999999887778886
Q ss_pred cC--CCeeEEEeccCcCceeEEEEEEe
Q 019349 209 VS--EATKSYSFRRGTYPSTIFSLSFG 233 (342)
Q Consensus 209 ~~--~~~~~~~~~~~~~~~~v~~l~fs 233 (342)
.. +|++-...... ...+..||.|.
T Consensus 320 ~d~~TG~L~~~~~~~-~~p~Pvcv~f~ 345 (346)
T COG2706 320 RDKETGRLTLLGRYA-VVPEPVCVKFL 345 (346)
T ss_pred EcCCCceEEeccccc-CCCCcEEEEEc
Confidence 64 55543322211 12234567664
No 270
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.85 E-value=1.1e-06 Score=72.91 Aligned_cols=216 Identities=14% Similarity=0.097 Sum_probs=127.3
Q ss_pred EEEEcC-----CCCEEEEEcCCc-EEEEeCCCCcEEEE---EeeCCEEEEEEcCCCC-eEEEEcCCCCCCCCCCeEEEEE
Q 019349 12 FVSFNQ-----DNSGFALSTKDG-FKIFDSSTGRLCYE---RAVGAFSIVEMLYSSS-LLAIVGAGEQPSLSPRRLCLFN 81 (342)
Q Consensus 12 ~l~fs~-----d~~~la~g~~~g-~~v~d~~~~~~~~~---~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~d~~i~iwd 81 (342)
.+.|.| ...+||.|+..| +.+|.+.+.+.... .+..++.++.-..+.. .+.+++ .|+++++.+
T Consensus 72 g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~s-------ndht~k~~~ 144 (344)
T KOG4532|consen 72 GMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIAS-------NDHTGKTMV 144 (344)
T ss_pred cccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeecc-------CCcceeEEE
Confidence 445555 334688887776 79999886643322 2223444333222222 233343 488888888
Q ss_pred CCCCcEEEEEecC-CceEEEEEcCCeEEEEE---CCeEEEEECCCC--ceeeEEeCCCCCceEEEEeeCCCccEEEEeCC
Q 019349 82 TTTGTALRELNFL-TSILAVRLNKKRLVIVL---REKTYIYDANTL--AILDTIDTVPNLKGLCAFSPSLNACFLAVPAS 155 (342)
Q Consensus 82 ~~~~~~~~~~~~~-~~v~~i~~~~~~~~~~~---d~~i~i~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 155 (342)
+.-+........+ -.+.++..+++.-..+. ...|..|.+.+. ..++ +...+....-.+.+++.+...+|++.
T Consensus 145 ~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~-~~~a~t~D~gF~~S~s~~~~~FAv~~- 222 (344)
T KOG4532|consen 145 VSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIEN-IYEAPTSDHGFYNSFSENDLQFAVVF- 222 (344)
T ss_pred EecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeee-eEecccCCCceeeeeccCcceEEEEe-
Confidence 7644332222222 23667777776544433 358999998653 2333 22223334456677777777888877
Q ss_pred CCccEEEEEEccCCcee-----EEEecccCCeeEEEECCCCCE-EEEEeCCCcEEEEEEcCCCeeEEEeccCc------C
Q 019349 156 TTKGSVLVYNVMELHSH-----CEIDAHQAPLAAIVLSSNGMY-IATASEQGTIIRVFLVSEATKSYSFRRGT------Y 223 (342)
Q Consensus 156 ~~~g~i~iwd~~~~~~~-----~~~~~h~~~v~~i~~s~dg~~-lat~s~dg~~irlwd~~~~~~~~~~~~~~------~ 223 (342)
+||++.|||++..... .+-+.|.+.+..+.|++-|.+ |+--++--..+.+-|++++.....+.... .
T Consensus 223 -Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~ 301 (344)
T KOG4532|consen 223 -QDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHN 301 (344)
T ss_pred -cCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCcccccccc
Confidence 7999999999865422 223468999999999986642 22223322235799999987554442211 1
Q ss_pred ceeEEEEEEecCCC
Q 019349 224 PSTIFSLSFGQSMQ 237 (342)
Q Consensus 224 ~~~v~~l~fs~d~~ 237 (342)
...|..-.|+.++.
T Consensus 302 tq~ifgt~f~~~n~ 315 (344)
T KOG4532|consen 302 TQHIFGTNFNNENE 315 (344)
T ss_pred ccccccccccCCCc
Confidence 12377777877776
No 271
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.84 E-value=5.6e-06 Score=83.49 Aligned_cols=279 Identities=14% Similarity=0.135 Sum_probs=165.1
Q ss_pred CCCCCeEEEEEcCCCCEEEEEcCCc-EEEE----eCCCCcEEEE-EeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEE
Q 019349 5 SSSYPVFFVSFNQDNSGFALSTKDG-FKIF----DSSTGRLCYE-RAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLC 78 (342)
Q Consensus 5 ~~~~~V~~l~fs~d~~~la~g~~~g-~~v~----d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~ 78 (342)
...+.|.++.|-+|...|+++..+| +.++ +..+...... .-..++...+|.++...++++++ ++++.
T Consensus 73 ~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~-------~~~l~ 145 (928)
T PF04762_consen 73 DPNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVTG-------EGNLL 145 (928)
T ss_pred CCCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEeC-------CCEEE
Confidence 3457899999999999999998888 4566 5555444332 23478999999999999999987 57777
Q ss_pred EEECCCCcEEEEEecCC------ceEEEEEcCCeEEE-EECCeEEEEECCCCcee--eEEeCCCCCceEEEEeeCCCccE
Q 019349 79 LFNTTTGTALRELNFLT------SILAVRLNKKRLVI-VLREKTYIYDANTLAIL--DTIDTVPNLKGLCAFSPSLNACF 149 (342)
Q Consensus 79 iwd~~~~~~~~~~~~~~------~v~~i~~~~~~~~~-~~d~~i~i~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 149 (342)
+.. ++-..+.+..... .-.++-|.++.... .+.++-.--.+.+.... ..-... ...+.+.+++-+||.+
T Consensus 146 ~mt-~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~y 223 (928)
T PF04762_consen 146 LMT-RDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEY 223 (928)
T ss_pred EEe-ccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcE
Confidence 664 5566666554322 12222222211000 00111000000111100 000001 2235678899999999
Q ss_pred EEEeCC--CC--ccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeC--CCcEEEEEEcCCCeeEEEeccC--
Q 019349 150 LAVPAS--TT--KGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASE--QGTIIRVFLVSEATKSYSFRRG-- 221 (342)
Q Consensus 150 l~~~~~--~~--~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~--dg~~irlwd~~~~~~~~~~~~~-- 221 (342)
+|+..- .. -..++||+-+ |+...+-+.-.+-=.+++|-|.|++||+.-. +...|-+|- ++|..-.+|.-.
T Consensus 224 FAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~~ 301 (928)
T PF04762_consen 224 FAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFE-RNGLRHGEFTLRFD 301 (928)
T ss_pred EEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEe-cCCcEeeeEecCCC
Confidence 997752 11 3689999955 5543333322222346899999999999865 222342444 577665555432
Q ss_pred cCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccc--cc---cccccccccccceeeecc
Q 019349 222 TYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSIL--PE---SVNEVLDPADHHVLRNAF 296 (342)
Q Consensus 222 ~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~--~~---~~~~~~~~~~~~~~~~~~ 296 (342)
.....|..|+|++|+. .||.--.|. |++|-...-. .|+...+ +. .....|+|...
T Consensus 302 ~~~~~v~~l~Wn~ds~---iLAv~~~~~-vqLWt~~NYH---------WYLKqei~~~~~~~~~~~~Wdpe~p------- 361 (928)
T PF04762_consen 302 PEEEKVIELAWNSDSE---ILAVWLEDR-VQLWTRSNYH---------WYLKQEIRFSSSESVNFVKWDPEKP------- 361 (928)
T ss_pred CCCceeeEEEECCCCC---EEEEEecCC-ceEEEeeCCE---------EEEEEEEEccCCCCCCceEECCCCC-------
Confidence 2345699999999999 899877654 9999765421 1111111 00 11256888652
Q ss_pred CCCccccEEEEEEeCCcEEEEEEe
Q 019349 297 PAGVKRASVSVITYNGYFVEYIFS 320 (342)
Q Consensus 297 ~~~~~~~~l~~~~~dg~v~~~~~~ 320 (342)
.+|.+++.+|.+..+++.
T Consensus 362 ------~~L~v~t~~g~~~~~~~~ 379 (928)
T PF04762_consen 362 ------LRLHVLTSNGQYEIYDFA 379 (928)
T ss_pred ------CEEEEEecCCcEEEEEEE
Confidence 578888888888777664
No 272
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.84 E-value=7e-08 Score=90.06 Aligned_cols=299 Identities=10% Similarity=0.047 Sum_probs=176.7
Q ss_pred CCCCeEEEEEcCCCCEEEEEcCCcEEEEeCCCC----cEEEEEeeCCEEEEEEcCCC-CeEEEEcCCCCCCCCCCeEEEE
Q 019349 6 SSYPVFFVSFNQDNSGFALSTKDGFKIFDSSTG----RLCYERAVGAFSIVEMLYSS-SLLAIVGAGEQPSLSPRRLCLF 80 (342)
Q Consensus 6 ~~~~V~~l~fs~d~~~la~g~~~g~~v~d~~~~----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~d~~i~iw 80 (342)
.++++..++.+|.|+-+|.++..|+.+-|++.. +.+.....-.++-+.|...+ ....+++. ...+-.+|
T Consensus 23 v~~~~~a~si~p~grdi~lAsr~gl~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVst------s~qkaiiw 96 (1081)
T KOG0309|consen 23 VDGGFNAVSINPSGRDIVLASRQGLYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVST------SNQKAIIW 96 (1081)
T ss_pred ecCcccceeeccccchhhhhhhcCeEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEec------Ccchhhhh
Confidence 346788899999999999999999888887543 33443333445556665544 33455555 36677899
Q ss_pred ECCC--CcEEEEEe--cCCceEEEEEcCCeE---EEEE-CCeEEEEECCCC-ceeeEEeCCCCCceEEEEeeCCCccEEE
Q 019349 81 NTTT--GTALRELN--FLTSILAVRLNKKRL---VIVL-REKTYIYDANTL-AILDTIDTVPNLKGLCAFSPSLNACFLA 151 (342)
Q Consensus 81 d~~~--~~~~~~~~--~~~~v~~i~~~~~~~---~~~~-d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 151 (342)
++.. .+.+..+- +...|+++.|+++.. ..++ |-.+..||+++. ..+.....-.+....+.+... +...+|
T Consensus 97 nlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk-~p~vla 175 (1081)
T KOG0309|consen 97 NLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYK-DPNVLA 175 (1081)
T ss_pred hhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeeccc-Ccchhh
Confidence 9753 34454443 344899999987653 3333 779999999886 344444333333333344332 233555
Q ss_pred EeCCCCccEEEEEEccCC-ceeEEEecccCCeeEEEECC-CCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEE
Q 019349 152 VPASTTKGSVLVYNVMEL-HSHCEIDAHQAPLAAIVLSS-NGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFS 229 (342)
Q Consensus 152 ~~~~~~~g~i~iwd~~~~-~~~~~~~~h~~~v~~i~~s~-dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~ 229 (342)
.. ....|++||++.+ .++..+++|...|+.++|+. .-..+.+++.||+ ++.||........+... ....+|..
T Consensus 176 ss---hg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~t-vkfw~y~kSt~e~~~~v-tt~~piw~ 250 (1081)
T KOG0309|consen 176 SS---HGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGT-VKFWDYSKSTTESKRTV-TTNFPIWR 250 (1081)
T ss_pred hc---cCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCc-eeeecccccccccceec-cccCccee
Confidence 43 3467999999876 47789999999999999986 3456889999998 58999875543322211 12334666
Q ss_pred EEEecCCCcccEEEEE-eCCCcEEEEecCCCCCCC---CCCCccccccccccccccccccccccceeeeccCCCccccEE
Q 019349 230 LSFGQSMQFQDILVAT-SSSGSLHVFSPGFAINQR---RGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASV 305 (342)
Q Consensus 230 l~fs~d~~~~~~l~~~-s~dg~i~vwd~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 305 (342)
-.|-|=+.+ +..-- -.++.+.+++.+....+. ...++-.-+.++......=+|--... .....+.++-+|
T Consensus 251 ~r~~Pfg~g--~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e----~~~d~d~rdfQL 324 (1081)
T KOG0309|consen 251 GRYLPFGEG--YCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKE----CDGDYDSRDFQL 324 (1081)
T ss_pred ccccccCce--eEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhccc----ccCCCCccceeE
Confidence 667775542 33222 223356666655432210 00111111112211111223332110 000112335689
Q ss_pred EEEEeCCcEEEEEEecC
Q 019349 306 SVITYNGYFVEYIFSIN 322 (342)
Q Consensus 306 ~~~~~dg~v~~~~~~~~ 322 (342)
++-|.|..++.|.++.+
T Consensus 325 VTWSkD~~lrlWpI~~~ 341 (1081)
T KOG0309|consen 325 VTWSKDQTLRLWPIDSQ 341 (1081)
T ss_pred EEeecCCceEeeeccHH
Confidence 99999999999998754
No 273
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.81 E-value=5.8e-06 Score=73.97 Aligned_cols=206 Identities=15% Similarity=0.126 Sum_probs=134.3
Q ss_pred EcCCCCEEEEEcCCcEEEEeCCCCcEEE-EEe--------eCC----EEEEE--EcCCCCeEEEEcCCCCCCCCCCeEEE
Q 019349 15 FNQDNSGFALSTKDGFKIFDSSTGRLCY-ERA--------VGA----FSIVE--MLYSSSLLAIVGAGEQPSLSPRRLCL 79 (342)
Q Consensus 15 fs~d~~~la~g~~~g~~v~d~~~~~~~~-~~~--------~~~----~~~~~--~~~~~~~~~~~~~g~~~~~~d~~i~i 79 (342)
.|.||+.++-.....+-+||.++.++.. +.. ... ...++ ...+++.+++++.| +.-|
T Consensus 274 ~nsDGkrIvFq~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSRG--------kaFi 345 (668)
T COG4946 274 ANSDGKRIVFQNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSRG--------KAFI 345 (668)
T ss_pred cCCCCcEEEEecCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEecC--------cEEE
Confidence 3679999988777778999988764321 110 000 00111 12356788888864 5555
Q ss_pred EECCCCcEEEEEecCCceEEEE--EcCCeEEEEE-CC-eEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCC
Q 019349 80 FNTTTGTALRELNFLTSILAVR--LNKKRLVIVL-RE-KTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPAS 155 (342)
Q Consensus 80 wd~~~~~~~~~~~~~~~v~~i~--~~~~~~~~~~-d~-~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 155 (342)
.+.-.+- ...+..+..|+-.. ..++..+++. |+ .+-|||..+++..+.. .+-..+.++..++++..++.+.
T Consensus 346 ~~~~~~~-~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e---~~lg~I~av~vs~dGK~~vvaN- 420 (668)
T COG4946 346 MRPWDGY-SIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIE---KDLGNIEAVKVSPDGKKVVVAN- 420 (668)
T ss_pred ECCCCCe-eEEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEee---CCccceEEEEEcCCCcEEEEEc-
Confidence 5433332 23333444454443 3556667766 55 9999999887644332 2234577888889999888877
Q ss_pred CCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCc---EEEEEEcCCCeeEEEeccCcCceeEEEEEE
Q 019349 156 TTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGT---IIRVFLVSEATKSYSFRRGTYPSTIFSLSF 232 (342)
Q Consensus 156 ~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~---~irlwd~~~~~~~~~~~~~~~~~~v~~l~f 232 (342)
....+.+.|+.++.....-+...+-|+..+|+|+++++|-+--+|- -|+++|+..++....-.. .+.=.+-||
T Consensus 421 -dr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~---ta~DfsPaF 496 (668)
T COG4946 421 -DRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTP---TAYDFSPAF 496 (668)
T ss_pred -CceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCC---cccccCccc
Confidence 5788999999999765544556778999999999999999977763 378999987765432211 122344578
Q ss_pred ecCCC
Q 019349 233 GQSMQ 237 (342)
Q Consensus 233 s~d~~ 237 (342)
.||++
T Consensus 497 D~d~r 501 (668)
T COG4946 497 DPDGR 501 (668)
T ss_pred CCCCc
Confidence 88887
No 274
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.80 E-value=1.9e-08 Score=90.98 Aligned_cols=177 Identities=15% Similarity=0.201 Sum_probs=121.5
Q ss_pred CCCeEEEEECCC-------CcEEEEEe-cCCceEEEEEcCCeEEEEE-CCeEEEEECCCCceeeEEeCCC---CCceEEE
Q 019349 73 SPRRLCLFNTTT-------GTALRELN-FLTSILAVRLNKKRLVIVL-REKTYIYDANTLAILDTIDTVP---NLKGLCA 140 (342)
Q Consensus 73 ~d~~i~iwd~~~-------~~~~~~~~-~~~~v~~i~~~~~~~~~~~-d~~i~i~d~~~~~~~~~~~~~~---~~~~~~~ 140 (342)
.|++|++|.++. ..|..+++ +..+|.++.|-.+...+++ |+-|.+||---++++..+...+ ....+.+
T Consensus 755 kDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~ScD~giHlWDPFigr~Laq~~dapk~~a~~~ikc 834 (1034)
T KOG4190|consen 755 KDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASCDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKC 834 (1034)
T ss_pred CCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeeccCcceeecccccchhHhhhcCcccCCCceeEe
Confidence 699999999863 12334443 3458999999887766666 9999999987777665543222 1122333
Q ss_pred EeeCCCccEEEEeCCCCccEEEEEEccCCceeEEEe-----cccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeE
Q 019349 141 FSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEID-----AHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKS 215 (342)
Q Consensus 141 ~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~-----~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~ 215 (342)
+- +-+...+ .++.....+|+++|.+..+-+..++ +....+.++++.+.|+++|.|=..|.+ -+.|.++|+.+
T Consensus 835 l~-nv~~~il-iAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci-~~LDaR~G~vI 911 (1034)
T KOG4190|consen 835 LE-NVDRHIL-IAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCI-AILDARNGKVI 911 (1034)
T ss_pred cc-cCcchhe-eeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcE-EEEecCCCcee
Confidence 32 2223233 3332367899999999887655544 445668999999999999999889985 59999999998
Q ss_pred EEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEE-EecCC
Q 019349 216 YSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHV-FSPGF 258 (342)
Q Consensus 216 ~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~v-wd~~~ 258 (342)
..++.- .+....++- |..+ .|+....|.++.| |-.-.
T Consensus 912 Nswrpm--ecdllqlaa-psdq---~L~~saldHslaVnWhald 949 (1034)
T KOG4190|consen 912 NSWRPM--ECDLLQLAA-PSDQ---ALAQSALDHSLAVNWHALD 949 (1034)
T ss_pred ccCCcc--cchhhhhcC-chhH---HHHhhcccceeEeeehhcC
Confidence 887532 233444443 5555 7888888999988 86433
No 275
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.79 E-value=4.8e-08 Score=98.96 Aligned_cols=187 Identities=9% Similarity=0.069 Sum_probs=134.0
Q ss_pred CceEEEEEcCCeEEEE---ECCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCce
Q 019349 95 TSILAVRLNKKRLVIV---LREKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHS 171 (342)
Q Consensus 95 ~~v~~i~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~ 171 (342)
..|+.+.-+|...... .|+.+++|....++.+..+++..+ ..+..+.++.+|.....+. .||.+-+|... .++
T Consensus 2209 ~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~-s~vtr~~f~~qGnk~~i~d--~dg~l~l~q~~-pk~ 2284 (2439)
T KOG1064|consen 2209 ENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGN-SRVTRSRFNHQGNKFGIVD--GDGDLSLWQAS-PKP 2284 (2439)
T ss_pred CceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCc-chhhhhhhcccCCceeeec--cCCceeecccC-Ccc
Confidence 4667776666543332 289999999999988888877655 4555555555555555555 58999999987 677
Q ss_pred eEEEecccCCeeEEEECCCCCEEEEEe--CCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCC
Q 019349 172 HCEIDAHQAPLAAIVLSSNGMYIATAS--EQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSG 249 (342)
Q Consensus 172 ~~~~~~h~~~v~~i~~s~dg~~lat~s--~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg 249 (342)
....+.|....+..+|-. ..+++++ .|+.-+.+||..-.....-+. ..|.+.++++++-|..+ +|++|+.+|
T Consensus 2285 ~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~-~~H~~gaT~l~~~P~~q---llisggr~G 2358 (2439)
T KOG1064|consen 2285 YTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH-TCHDGGATVLAYAPKHQ---LLISGGRKG 2358 (2439)
T ss_pred eeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee-eecCCCceEEEEcCcce---EEEecCCcC
Confidence 888899999999999975 6777774 344446899975322111111 23455689999999999 999999999
Q ss_pred cEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEEEEEEeCCcEEEEEEecC
Q 019349 250 SLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSIN 322 (342)
Q Consensus 250 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~~~~~ 322 (342)
.|++||++..+.... . ..|+ .. .+++++++.|.++||+++..
T Consensus 2359 ~v~l~D~rqrql~h~-----------~-----~~~~-~~--------------~~f~~~ss~g~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2359 EVCLFDIRQRQLRHT-----------F-----QALD-TR--------------EYFVTGSSEGNIKIWRLSEF 2400 (2439)
T ss_pred cEEEeehHHHHHHHH-----------h-----hhhh-hh--------------heeeccCcccceEEEEcccc
Confidence 999999987654221 0 1233 22 68999999999999998754
No 276
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=98.76 E-value=2.4e-07 Score=82.66 Aligned_cols=252 Identities=12% Similarity=0.097 Sum_probs=148.8
Q ss_pred eeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEEEEEec--CCceEEEEE---cCCeEEEEE--CCeEEE
Q 019349 45 AVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNF--LTSILAVRL---NKKRLVIVL--REKTYI 117 (342)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~~~~--~~~v~~i~~---~~~~~~~~~--d~~i~i 117 (342)
|.+-+..+.+...+..++..+ .|.+|.+||..++.....+.- ...|....| +.+..++.. |+++++
T Consensus 141 H~GcVntV~FN~~Gd~l~SgS-------DD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~ 213 (559)
T KOG1334|consen 141 HKGCVNTVHFNQRGDVLASGS-------DDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRV 213 (559)
T ss_pred CCCccceeeecccCceeeccC-------ccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceee
Confidence 334455555555555554333 599999999999888776642 335544444 334444433 888888
Q ss_pred EECC-CCcee--eEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCceeEEE---ecccC---CeeEEEEC
Q 019349 118 YDAN-TLAIL--DTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEI---DAHQA---PLAAIVLS 188 (342)
Q Consensus 118 ~d~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~---~~h~~---~v~~i~~s 188 (342)
=.+- ++.+. ..+..|.++....++-+.... -+.++| .|+.+.-+|+++..+...+ +.+.. ....|+..
T Consensus 214 s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~-~f~S~g--eD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~ 290 (559)
T KOG1334|consen 214 SEILETGYVENTKRLAPHEGPVHKLAVEPDSPK-PFLSCG--EDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVD 290 (559)
T ss_pred eeeccccceecceecccccCccceeeecCCCCC-cccccc--cccceeeeeeccCCccceeeeeccCCccceeeeeEecC
Confidence 7663 33332 223444555555566554333 344555 6899999999877654333 34444 57889999
Q ss_pred CCCC-EEEEEeCCCcEEEEEEcCCCeeE------EEeccC----cCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecC
Q 019349 189 SNGM-YIATASEQGTIIRVFLVSEATKS------YSFRRG----TYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPG 257 (342)
Q Consensus 189 ~dg~-~lat~s~dg~~irlwd~~~~~~~------~~~~~~----~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~ 257 (342)
|-.. .+|+|+.|. ..|++|.+.-.+. ..|-.. ..+..|++++|+.++. -|+++..|-.|++|.-.
T Consensus 291 P~nt~~faVgG~dq-f~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~s---ElLaSYnDe~IYLF~~~ 366 (559)
T KOG1334|consen 291 PRNTNEFAVGGSDQ-FARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGS---ELLASYNDEDIYLFNKS 366 (559)
T ss_pred CCCccccccCChhh-hhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCcc---ceeeeecccceEEeccc
Confidence 9654 899999996 4699998754322 222211 2234599999998887 57777788899999533
Q ss_pred CCCC--CCCCCCcccccccccccccccccccccccee--eecc-CCCccccEEEEEEeCCcEEEEEEe
Q 019349 258 FAIN--QRRGGRTSSILGSILPESVNEVLDPADHHVL--RNAF-PAGVKRASVSVITYNGYFVEYIFS 320 (342)
Q Consensus 258 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~l~~~~~dg~v~~~~~~ 320 (342)
...- +-.... ...+.+. + ..+|+-. +.-+ =|||+.+++++||.=|.|.+|+-.
T Consensus 367 ~~~G~~p~~~s~----~~~~~k~----v--YKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~ 424 (559)
T KOG1334|consen 367 MGDGSEPDPSSP----REQYVKR----V--YKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKK 424 (559)
T ss_pred cccCCCCCCCcc----hhhccch----h--hcccccccccceeeeccCccceEEecCccceEEEEecc
Confidence 2211 110000 0011111 0 0111111 0111 146777999999999999999643
No 277
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.76 E-value=5.9e-07 Score=76.99 Aligned_cols=193 Identities=14% Similarity=0.191 Sum_probs=115.1
Q ss_pred CCCeEEEEEcCCCCEEEEEcCCcE-EEEeCC----CCc--EEEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEE
Q 019349 7 SYPVFFVSFNQDNSGFALSTKDGF-KIFDSS----TGR--LCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCL 79 (342)
Q Consensus 7 ~~~V~~l~fs~d~~~la~g~~~g~-~v~d~~----~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~i 79 (342)
+.++++++++++...|++|-++|- .=|.+. ... ..+..+...+..+-+......++..+- |..+ .
T Consensus 68 P~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~-------dk~~-~ 139 (404)
T KOG1409|consen 68 PSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGK-------DKQF-A 139 (404)
T ss_pred CCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEecc-------ccce-E
Confidence 568899999999999999988873 444332 111 122223333333333333344433332 4443 4
Q ss_pred EE-CCCCcEEEEEecCCceEEEEEcCCeEEEEE-CCeEEEEEC--CCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCC
Q 019349 80 FN-TTTGTALRELNFLTSILAVRLNKKRLVIVL-REKTYIYDA--NTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPAS 155 (342)
Q Consensus 80 wd-~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~-d~~i~i~d~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 155 (342)
|- .+.+..+..+.+.....+..+.-....+.. .+.|.+-.+ ....++.++..+ ...+.++++++....|.++.
T Consensus 140 ~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h--~~~~~~l~Wd~~~~~LfSg~- 216 (404)
T KOG1409|consen 140 WHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGH--TGEVTCLKWDPGQRLLFSGA- 216 (404)
T ss_pred EEeeccCCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCc--ccceEEEEEcCCCcEEEecc-
Confidence 44 345555544433222222111111111111 344444433 233455555443 44688899998877777766
Q ss_pred CCccEEEEEEccCCc-eeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCC
Q 019349 156 TTKGSVLVYNVMELH-SHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEA 212 (342)
Q Consensus 156 ~~~g~i~iwd~~~~~-~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~ 212 (342)
.|..|.+||+.-.+ ....+.+|...|..+..-+--+.|.++++||.+ -+|+.+..
T Consensus 217 -~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i-~~w~mn~~ 272 (404)
T KOG1409|consen 217 -SDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGI-VVWNMNVK 272 (404)
T ss_pred -ccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeE-EEEeccce
Confidence 58899999986554 345677899999999998888999999999975 69998654
No 278
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.74 E-value=5.2e-07 Score=76.43 Aligned_cols=282 Identities=12% Similarity=0.160 Sum_probs=153.0
Q ss_pred CCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCc---E--E--EEEee------------CCEEEEEEcCCC--CeEEE
Q 019349 6 SSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGR---L--C--YERAV------------GAFSIVEMLYSS--SLLAI 63 (342)
Q Consensus 6 ~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~---~--~--~~~~~------------~~~~~~~~~~~~--~~~~~ 63 (342)
....|+++.|...|.+|++|...| +.+|.-+... . . ++.+. ..+..+.|.... +.+++
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 446799999999999999999877 5777543322 0 0 11110 123344554443 23334
Q ss_pred EcCCCCCCCCCCeEEEEECCCCc--EEEEEec--------CCceEEE------EEcCCeEEEEE-CCeEEEEECCCCcee
Q 019349 64 VGAGEQPSLSPRRLCLFNTTTGT--ALRELNF--------LTSILAV------RLNKKRLVIVL-REKTYIYDANTLAIL 126 (342)
Q Consensus 64 ~~~g~~~~~~d~~i~iwd~~~~~--~~~~~~~--------~~~v~~i------~~~~~~~~~~~-d~~i~i~d~~~~~~~ 126 (342)
+ + .|++|++|.+.... .+.+-.. .+++++. .++....+++. ..+
T Consensus 105 s-t------NdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~r------------ 165 (460)
T COG5170 105 S-T------NDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCR------------ 165 (460)
T ss_pred e-c------CCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccce------------
Confidence 4 3 49999999986542 2221111 1111111 01111111111 111
Q ss_pred eEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCce---eEEEeccc-----CCeeEEEECCCC-CEEEEE
Q 019349 127 DTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHS---HCEIDAHQ-----APLAAIVLSSNG-MYIATA 197 (342)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~---~~~~~~h~-----~~v~~i~~s~dg-~~lat~ 197 (342)
+....++.-+.+++.+.|...+.++. +=.|.+|++.-... +.-++.|. .-|++..|+|.. +.+.-.
T Consensus 166 --vyaNaH~yhiNSiS~NsD~et~lSaD---dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYS 240 (460)
T COG5170 166 --VYANAHPYHINSISFNSDKETLLSAD---DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYS 240 (460)
T ss_pred --eccccceeEeeeeeecCchheeeecc---ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEe
Confidence 11123344566777777777777654 67899999865432 23344443 458889999954 556667
Q ss_pred eCCCcEEEEEEcCCCe------eEEEec-cCcC-------ceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCC
Q 019349 198 SEQGTIIRVFLVSEAT------KSYSFR-RGTY-------PSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQR 263 (342)
Q Consensus 198 s~dg~~irlwd~~~~~------~~~~~~-~~~~-------~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~ 263 (342)
+..|+ |++-|++... .+.+.. .+.. ...|..+.|+++|+ ++++- +-.+|+|||++..+.+-
T Consensus 241 sSkG~-Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngr---yIlsR-dyltvkiwDvnm~k~pi 315 (460)
T COG5170 241 SSKGE-IKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGR---YILSR-DYLTVKIWDVNMAKNPI 315 (460)
T ss_pred cCCCc-EEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCc---EEEEe-ccceEEEEecccccCCc
Confidence 77887 6899998432 111111 1110 12378899999998 66644 45699999998776543
Q ss_pred C-CCCccccccccccccccccccccccceeeeccCCCccccEEEEEEeCCcEEEEEEecC
Q 019349 264 R-GGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSIN 322 (342)
Q Consensus 264 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~~~~~ 322 (342)
. .......+. -+.+ +..-+- -...+.+.|..++..+++|+....+-+|..+..
T Consensus 316 kTi~~h~~l~~-~l~d----~YEnDa-ifdkFeisfSgd~~~v~sgsy~NNfgiyp~~ss 369 (460)
T COG5170 316 KTIPMHCDLMD-ELND----VYENDA-IFDKFEISFSGDDKHVLSGSYSNNFGIYPTDSS 369 (460)
T ss_pred eeechHHHHHH-HHHh----hhhccc-eeeeEEEEecCCcccccccccccceeeeccccC
Confidence 1 111111000 0000 111000 011134455666688888888888888875443
No 279
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.73 E-value=4e-07 Score=75.23 Aligned_cols=96 Identities=17% Similarity=0.200 Sum_probs=71.7
Q ss_pred CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCce-eEEEecccCCeeEEEECC-
Q 019349 112 REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHS-HCEIDAHQAPLAAIVLSS- 189 (342)
Q Consensus 112 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~-~~~~~~h~~~v~~i~~s~- 189 (342)
-+..++|+++..+.+..- ......+.+++.+|..+.+.++|. .+|.+.+||.++... +..+++|+.+|+.|-|+|
T Consensus 158 ~d~~~a~~~~p~~t~~~~--~~~~~~v~~l~~hp~qq~~v~cgt-~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk 234 (319)
T KOG4714|consen 158 QDNFYANTLDPIKTLIPS--KKALDAVTALCSHPAQQHLVCCGT-DDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPK 234 (319)
T ss_pred ccceeeeccccccccccc--ccccccchhhhCCcccccEEEEec-CCCeEEEEEcccccchHHHHHHhhhhhhheeccCC
Confidence 456777887654332111 112234777888887777777776 799999999998753 456789999999999999
Q ss_pred CCCEEEEEeCCCcEEEEEEcCC
Q 019349 190 NGMYIATASEQGTIIRVFLVSE 211 (342)
Q Consensus 190 dg~~lat~s~dg~~irlwd~~~ 211 (342)
++..|.|+++||.++ -||..+
T Consensus 235 ~p~~Lft~sedGslw-~wdas~ 255 (319)
T KOG4714|consen 235 NPEHLFTCSEDGSLW-HWDAST 255 (319)
T ss_pred CchheeEecCCCcEE-EEcCCC
Confidence 678999999999976 688754
No 280
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.70 E-value=3.4e-05 Score=79.28 Aligned_cols=234 Identities=14% Similarity=0.088 Sum_probs=126.8
Q ss_pred CCCeEEEEECCCCcEEEEEecC---------------CceEEEEEcCC--eEEEEE--CCeEEEEECCCCceeeEEeCCC
Q 019349 73 SPRRLCLFNTTTGTALRELNFL---------------TSILAVRLNKK--RLVIVL--REKTYIYDANTLAILDTIDTVP 133 (342)
Q Consensus 73 ~d~~i~iwd~~~~~~~~~~~~~---------------~~v~~i~~~~~--~~~~~~--d~~i~i~d~~~~~~~~~~~~~~ 133 (342)
..+.|+++|.. ++.+..+... ....+++++++ .++++. .+.|+++|+.++. +.++....
T Consensus 588 ~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~-V~tlag~G 665 (1057)
T PLN02919 588 NHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALREIDFVNET-VRTLAGNG 665 (1057)
T ss_pred CCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEEEecCCCE-EEEEeccC
Confidence 47889999975 4444333221 12467788654 355554 3589999987754 33331100
Q ss_pred --------C-------CceEEEEeeCC-CccEEEEeCCCCccEEEEEEccCCceeEEEec---------------ccCCe
Q 019349 134 --------N-------LKGLCAFSPSL-NACFLAVPASTTKGSVLVYNVMELHSHCEIDA---------------HQAPL 182 (342)
Q Consensus 134 --------~-------~~~~~~~~~~~-~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~---------------h~~~v 182 (342)
. -.....++.++ ++...++.. .++.|++||..++... .+.+ .-...
T Consensus 666 ~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~--~~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P 742 (1057)
T PLN02919 666 TKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMA--GQHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQP 742 (1057)
T ss_pred cccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEEC--CCCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCc
Confidence 0 00112344555 333333333 4789999998776432 2211 11235
Q ss_pred eEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEe-----------ccCcC--------ceeEEEEEEecCCCcccEEE
Q 019349 183 AAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSF-----------RRGTY--------PSTIFSLSFGQSMQFQDILV 243 (342)
Q Consensus 183 ~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~-----------~~~~~--------~~~v~~l~fs~d~~~~~~l~ 243 (342)
+.|+++|+|++|..+..+...|++||+.++...... .-+.. -....+++|++++. +++
T Consensus 743 ~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~---LYV 819 (1057)
T PLN02919 743 SGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQ---IYV 819 (1057)
T ss_pred cEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCc---EEE
Confidence 679999999866555544334799999876532110 00000 01246899999998 888
Q ss_pred EEeCCCcEEEEecCCCCCCCCCCC-ccccccccccccccccccccccceeeeccCCCccccEEEEEEeCCcEEEEEEecC
Q 019349 244 ATSSSGSLHVFSPGFAINQRRGGR-TSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSIN 322 (342)
Q Consensus 244 ~~s~dg~i~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~~~~~ 322 (342)
+-+.+++|++||.++......... ..++..+. ......-.|. .+++.++++.+++-+.++.|++|++...
T Consensus 820 ADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~--~~~a~l~~P~-------GIavd~dG~lyVaDt~Nn~Irvid~~~~ 890 (1057)
T PLN02919 820 ADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGK--ALKAQLSEPA-------GLALGENGRLFVADTNNSLIRYLDLNKG 890 (1057)
T ss_pred EECCCCEEEEEECCCCeEEEEeccCCcCCCCCc--ccccccCCce-------EEEEeCCCCEEEEECCCCEEEEEECCCC
Confidence 889999999999876542110000 00000000 0000011111 1233445566666677899999987654
Q ss_pred C
Q 019349 323 N 323 (342)
Q Consensus 323 ~ 323 (342)
+
T Consensus 891 ~ 891 (1057)
T PLN02919 891 E 891 (1057)
T ss_pred c
Confidence 3
No 281
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.68 E-value=0.00014 Score=62.54 Aligned_cols=214 Identities=14% Similarity=0.095 Sum_probs=127.6
Q ss_pred EEEEcC-CCCEEEEEcCCc-EEEEeCCCCcEEEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEEE
Q 019349 12 FVSFNQ-DNSGFALSTKDG-FKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALR 89 (342)
Q Consensus 12 ~l~fs~-d~~~la~g~~~g-~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~ 89 (342)
+..|.+ ++.++.+....+ +..|+..+++........... +.+....+.+.++.. +.+.++|..+++...
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~~~G-~~~~~~~g~l~v~~~--------~~~~~~d~~~g~~~~ 74 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPGPNG-MAFDRPDGRLYVADS--------GGIAVVDPDTGKVTV 74 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEESSSEEE-EEEECTTSEEEEEET--------TCEEEEETTTTEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEecCCCce-EEEEccCCEEEEEEc--------CceEEEecCCCcEEE
Confidence 578998 666666665554 688898888665433223333 333323355544443 456667998886544
Q ss_pred EEec------CCceEEEEEcCCeEEEEEC-----------CeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEE
Q 019349 90 ELNF------LTSILAVRLNKKRLVIVLR-----------EKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAV 152 (342)
Q Consensus 90 ~~~~------~~~v~~i~~~~~~~~~~~d-----------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 152 (342)
.... .....++++.+++.+.+++ +.++.++.. ++.......- .....+++++++..|.+
T Consensus 75 ~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~---~~pNGi~~s~dg~~lyv 150 (246)
T PF08450_consen 75 LADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGL---GFPNGIAFSPDGKTLYV 150 (246)
T ss_dssp EEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEE---SSEEEEEEETTSSEEEE
T ss_pred EeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCc---ccccceEECCcchheee
Confidence 3332 1267889999887655541 346667766 4433222221 12335566677777665
Q ss_pred eCCCCccEEEEEEccCCce----eEEE---ecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCce
Q 019349 153 PASTTKGSVLVYNVMELHS----HCEI---DAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPS 225 (342)
Q Consensus 153 ~~~~~~g~i~iwd~~~~~~----~~~~---~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~ 225 (342)
+.. ..+.|..+++..... ...+ ..-.+..-.+++..+|++.++....+. |.++|.. |+.+..+.... .
T Consensus 151 ~ds-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~-I~~~~p~-G~~~~~i~~p~--~ 225 (246)
T PF08450_consen 151 ADS-FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGR-IVVFDPD-GKLLREIELPV--P 225 (246)
T ss_dssp EET-TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTE-EEEEETT-SCEEEEEE-SS--S
T ss_pred ccc-ccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCE-EEEECCC-ccEEEEEcCCC--C
Confidence 554 578899999863321 1222 222224788999999998887766676 5689986 98888776442 3
Q ss_pred eEEEEEEe-cCCCcccEEEEEe
Q 019349 226 TIFSLSFG-QSMQFQDILVATS 246 (342)
Q Consensus 226 ~v~~l~fs-~d~~~~~~l~~~s 246 (342)
.+++++|. ++.+ .|...+
T Consensus 226 ~~t~~~fgg~~~~---~L~vTt 244 (246)
T PF08450_consen 226 RPTNCAFGGPDGK---TLYVTT 244 (246)
T ss_dssp SEEEEEEESTTSS---EEEEEE
T ss_pred CEEEEEEECCCCC---EEEEEe
Confidence 58999995 5655 555544
No 282
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.66 E-value=3.3e-05 Score=78.05 Aligned_cols=300 Identities=13% Similarity=0.136 Sum_probs=157.8
Q ss_pred CCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcEEEEEeeCCEEEEEEcCCCCeEEEEcCCCC-CCCCCCeEE-----
Q 019349 6 SSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQ-PSLSPRRLC----- 78 (342)
Q Consensus 6 ~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~d~~i~----- 78 (342)
.+..|.+++||||+..|+..+.++ +.+-+ .++..+.+.... .-.+..+..+.+|-|++ +++.-..-|
T Consensus 119 vd~GI~a~~WSPD~Ella~vT~~~~l~~mt-~~fd~i~E~~l~-----~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~ 192 (928)
T PF04762_consen 119 VDSGILAASWSPDEELLALVTGEGNLLLMT-RDFDPISEVPLD-----SDDFGESKHVSVGWGKKETQFHGSAGKAAARQ 192 (928)
T ss_pred EcCcEEEEEECCCcCEEEEEeCCCEEEEEe-ccceEEEEeecC-----ccccCCCceeeeccCcccCccCcchhhhhhhh
Confidence 467899999999999998887665 33332 333333332211 11112223344444432 111100000
Q ss_pred EEECCCC-cEEEEEecCCceEEEEEcCCeEEEE--E-----C--CeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCcc
Q 019349 79 LFNTTTG-TALRELNFLTSILAVRLNKKRLVIV--L-----R--EKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNAC 148 (342)
Q Consensus 79 iwd~~~~-~~~~~~~~~~~v~~i~~~~~~~~~~--~-----d--~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (342)
+=|.... .....+.....-..|+|-+|+-+++ + + ..++||+-+ |.+...-+. -..---++++.|.|.
T Consensus 193 ~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~--v~gLe~~l~WrPsG~ 269 (928)
T PF04762_consen 193 LRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEP--VDGLEGALSWRPSGN 269 (928)
T ss_pred ccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEecccc--CCCccCCccCCCCCC
Confidence 0000000 0001111223445677777654332 2 2 478999965 544433221 111233678888899
Q ss_pred EEEEeCCC-CccEEEEEEccCCceeEEE----ecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCe--eEEEeccC
Q 019349 149 FLAVPAST-TKGSVLVYNVMELHSHCEI----DAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEAT--KSYSFRRG 221 (342)
Q Consensus 149 ~l~~~~~~-~~g~i~iwd~~~~~~~~~~----~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~--~~~~~~~~ 221 (342)
+||++-+. ....|.+|+ ++|-.-..| ......|..+.|++|+..||.--.|. |++|-..+.. +.+++.-.
T Consensus 270 lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~--vqLWt~~NYHWYLKqei~~~ 346 (928)
T PF04762_consen 270 LIASSQRLPDRHDVVFFE-RNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR--VQLWTRSNYHWYLKQEIRFS 346 (928)
T ss_pred EEEEEEEcCCCcEEEEEe-cCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC--ceEEEeeCCEEEEEEEEEcc
Confidence 99987532 124466666 334322222 23456899999999999999988775 6899988764 23333321
Q ss_pred cCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCC--CCCccccc--------------cccccccc-cccc
Q 019349 222 TYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRR--GGRTSSIL--------------GSILPESV-NEVL 284 (342)
Q Consensus 222 ~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~--~~~~~~~~--------------~~~~~~~~-~~~~ 284 (342)
....+..+.|+|... ..|...+.+|.+..++..-...... .....+.. ....|+.. ....
T Consensus 347 -~~~~~~~~~Wdpe~p--~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l 423 (928)
T PF04762_consen 347 -SSESVNFVKWDPEKP--LRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYEL 423 (928)
T ss_pred -CCCCCCceEECCCCC--CEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEE
Confidence 122344589999876 2788888878887666533211110 00011111 01122211 0000
Q ss_pred cccccceeeeccCCCccccEEEEEEeCCcEEEEEEecCC
Q 019349 285 DPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSINN 323 (342)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~~~~~~ 323 (342)
. ....+..++|.+....+++...||.+.+|.++...
T Consensus 424 ~---~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~ 459 (928)
T PF04762_consen 424 E---LPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKN 459 (928)
T ss_pred c---CCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCC
Confidence 0 01123455666666679999999999999976544
No 283
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.65 E-value=5.9e-06 Score=75.21 Aligned_cols=235 Identities=15% Similarity=0.194 Sum_probs=133.5
Q ss_pred CCeEEEEEcCCCCEEEEEc----------C--CcEEEEeCCCCcEEEEEee-----CCEEEEEEcCCCCeEEEEcCCCCC
Q 019349 8 YPVFFVSFNQDNSGFALST----------K--DGFKIFDSSTGRLCYERAV-----GAFSIVEMLYSSSLLAIVGAGEQP 70 (342)
Q Consensus 8 ~~V~~l~fs~d~~~la~g~----------~--~g~~v~d~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~g~~~ 70 (342)
..|..+.|||..+||++=+ . +.++|||+.+|.+...... ..-.+..|.++..++|-..+
T Consensus 250 p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~---- 325 (698)
T KOG2314|consen 250 PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG---- 325 (698)
T ss_pred CCceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc----
Confidence 4688999999999998743 1 2379999999977654432 23456788889999887765
Q ss_pred CCCCCeEEEEECCCCcEEEEEec-CCceEEEEEcCCeEEEEE-------------------CCeE---EEEECCC-----
Q 019349 71 SLSPRRLCLFNTTTGTALRELNF-LTSILAVRLNKKRLVIVL-------------------REKT---YIYDANT----- 122 (342)
Q Consensus 71 ~~~d~~i~iwd~~~~~~~~~~~~-~~~v~~i~~~~~~~~~~~-------------------d~~i---~i~d~~~----- 122 (342)
+.|.|++..+-..+..-.. .+.|++..|+|...++|. ...| .++++.+
T Consensus 326 ----~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhW 401 (698)
T KOG2314|consen 326 ----NSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHW 401 (698)
T ss_pred ----ceEEEEecCceeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEe
Confidence 5777777654222211111 123444444443333221 0011 1121111
Q ss_pred ---Ccee---------------------eEEeCC-------CCCceEEEEeeCCCccEEE-EeCCCCccEEEEEEccC-C
Q 019349 123 ---LAIL---------------------DTIDTV-------PNLKGLCAFSPSLNACFLA-VPASTTKGSVLVYNVME-L 169 (342)
Q Consensus 123 ---~~~~---------------------~~~~~~-------~~~~~~~~~~~~~~~~~l~-~~~~~~~g~i~iwd~~~-~ 169 (342)
+..+ ..+... .-...+.++++.|.+..++ ..|.+...++.+|-+++ .
T Consensus 402 Qk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~ 481 (698)
T KOG2314|consen 402 QKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNI 481 (698)
T ss_pred ccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCC
Confidence 1000 000000 0012356777777665544 33444567899998873 2
Q ss_pred c---eeEEEecccCCeeEEEECCCCCEEEEEe---CCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEE
Q 019349 170 H---SHCEIDAHQAPLAAIVLSSNGMYIATAS---EQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILV 243 (342)
Q Consensus 170 ~---~~~~~~~h~~~v~~i~~s~dg~~lat~s---~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~ 243 (342)
. .+..+. +...+.+.|+|.|++++.+. ..|. +..+|+.-.... ... .......+.+.|.|.|+ |++
T Consensus 482 ~~~~lVk~~d--k~~~N~vfwsPkG~fvvva~l~s~~g~-l~F~D~~~a~~k-~~~-~~eh~~at~veWDPtGR---Yvv 553 (698)
T KOG2314|consen 482 KKPSLVKELD--KKFANTVFWSPKGRFVVVAALVSRRGD-LEFYDTDYADLK-DTA-SPEHFAATEVEWDPTGR---YVV 553 (698)
T ss_pred Cchhhhhhhc--ccccceEEEcCCCcEEEEEEecccccc-eEEEecchhhhh-hcc-CccccccccceECCCCC---EEE
Confidence 2 233333 34568899999999998875 3465 468888632211 111 11111256788999999 999
Q ss_pred EEeC------CCcEEEEecCC
Q 019349 244 ATSS------SGSLHVFSPGF 258 (342)
Q Consensus 244 ~~s~------dg~i~vwd~~~ 258 (342)
+++. |.--+||++..
T Consensus 554 T~ss~wrhk~d~GYri~tfqG 574 (698)
T KOG2314|consen 554 TSSSSWRHKVDNGYRIFTFQG 574 (698)
T ss_pred EeeehhhhccccceEEEEeec
Confidence 8876 44567787654
No 284
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.63 E-value=2.7e-05 Score=70.27 Aligned_cols=233 Identities=12% Similarity=0.155 Sum_probs=144.4
Q ss_pred CCCeEEEEEcCCCCEEEEEcC----------------CcEEEEeCCCCcEEEEEeeCCE-----EEEEEcCCCCeEEEEc
Q 019349 7 SYPVFFVSFNQDNSGFALSTK----------------DGFKIFDSSTGRLCYERAVGAF-----SIVEMLYSSSLLAIVG 65 (342)
Q Consensus 7 ~~~V~~l~fs~d~~~la~g~~----------------~g~~v~d~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 65 (342)
-..|..+.|+|.+++|.+=+. +...+||+.++.+++....... ..+.+..+.++.+-+.
T Consensus 71 ~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv 150 (561)
T COG5354 71 HPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVV 150 (561)
T ss_pred cCCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhc
Confidence 356889999999999987432 2357999999998877654222 2566666777776554
Q ss_pred CCCCCCCCCCeEEEEECCCCcEE-EEE-ec-CCceEEEEEcCC----eEEEEE------CCeEEEEECCCCceeeEEeCC
Q 019349 66 AGEQPSLSPRRLCLFNTTTGTAL-REL-NF-LTSILAVRLNKK----RLVIVL------REKTYIYDANTLAILDTIDTV 132 (342)
Q Consensus 66 ~g~~~~~~d~~i~iwd~~~~~~~-~~~-~~-~~~v~~i~~~~~----~~~~~~------d~~i~i~d~~~~~~~~~~~~~ 132 (342)
+ ..++++++ ++... ..+ .. ...|....++|. .++... ..++++|.+...+.+.+....
T Consensus 151 ~--------~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lf 221 (561)
T COG5354 151 G--------SSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLF 221 (561)
T ss_pred c--------CeEEEEec-CCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeE
Confidence 3 58999997 33211 111 11 245677777665 222222 458999999766554432111
Q ss_pred CCCceEEEEeeCCCccEEEEeC-------CC--CccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEe--CCC
Q 019349 133 PNLKGLCAFSPSLNACFLAVPA-------ST--TKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATAS--EQG 201 (342)
Q Consensus 133 ~~~~~~~~~~~~~~~~~l~~~~-------~~--~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s--~dg 201 (342)
. ..-|.+.+.+.+.+|++-- .. ....+.|+++.... +.....-.++|...+|+|.++.+++.+ .+.
T Consensus 222 k--~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~-i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa 298 (561)
T COG5354 222 K--VSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERS-IPVEKDLKDPVHDFTWEPLSSRFAVISGYMPA 298 (561)
T ss_pred e--ecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccc-cceeccccccceeeeecccCCceeEEeccccc
Confidence 0 1123344444444433210 00 13568888887433 222335688999999999998887766 444
Q ss_pred cEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCC---CcEEEEecCCCC
Q 019349 202 TIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSS---GSLHVFSPGFAI 260 (342)
Q Consensus 202 ~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~d---g~i~vwd~~~~~ 260 (342)
. +.++|++.. ...-+..+ .=+.+.|||.++ +++.++-| |.|-+||.....
T Consensus 299 ~-~s~~~lr~N-l~~~~Pe~----~rNT~~fsp~~r---~il~agF~nl~gni~i~~~~~rf 351 (561)
T COG5354 299 S-VSVFDLRGN-LRFYFPEQ----KRNTIFFSPHER---YILFAGFDNLQGNIEIFDPAGRF 351 (561)
T ss_pred c-eeecccccc-eEEecCCc----ccccccccCccc---EEEEecCCccccceEEeccCCce
Confidence 4 568999754 54444322 234578999999 88887766 579999976543
No 285
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.63 E-value=1.5e-05 Score=66.40 Aligned_cols=184 Identities=13% Similarity=-0.005 Sum_probs=119.3
Q ss_pred CCCeEEEEECCCCcEEEEEecCCce------EEEEEcCCeEEEEE-CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCC
Q 019349 73 SPRRLCLFNTTTGTALRELNFLTSI------LAVRLNKKRLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSL 145 (342)
Q Consensus 73 ~d~~i~iwd~~~~~~~~~~~~~~~v------~~i~~~~~~~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (342)
..+...+|...+.+....+ ..... +..+-..-.+.+++ |.++++.+++-+..-... +........++.++
T Consensus 92 ~~g~fd~~~~~tn~~h~~~-cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~--h~~~~~~ns~~~sn 168 (344)
T KOG4532|consen 92 ASGQFDLFACNTNDGHLYQ-CDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAV--HNQNLTQNSLHYSN 168 (344)
T ss_pred ccceeeeecccCcccceee-ecccccchhhhhhhcccccceeeccCCcceeEEEEecCccccee--eccccceeeeEEcC
Confidence 4789999998876543222 22222 23333444566666 788888888654222222 11112355667778
Q ss_pred CccEEEEeCCCCccEEEEEEccCC-ce-eEEE-ecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEe---c
Q 019349 146 NACFLAVPASTTKGSVLVYNVMEL-HS-HCEI-DAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSF---R 219 (342)
Q Consensus 146 ~~~~l~~~~~~~~g~i~iwd~~~~-~~-~~~~-~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~---~ 219 (342)
++.++++.| ....|..|.+... +. +... ..-++.=-+..|+.....+|+++.||++ -|||++.......+ .
T Consensus 169 d~~~~~~Vg--ds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~-~I~DVR~~~tpm~~~sst 245 (344)
T KOG4532|consen 169 DPSWGSSVG--DSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTC-AIYDVRNMATPMAEISST 245 (344)
T ss_pred CCceEEEec--CCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcE-EEEEecccccchhhhccc
Confidence 888999998 4688999988543 22 2212 2233445678899999999999999996 69999876433322 2
Q ss_pred cCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCC
Q 019349 220 RGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQR 263 (342)
Q Consensus 220 ~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~ 263 (342)
+.++.+.+..+.|++-|. .++|.-.-.-+.+++-|+++.....
T Consensus 246 rp~hnGa~R~c~Fsl~g~-lDLLf~sEhfs~~hv~D~R~~~~~q 288 (344)
T KOG4532|consen 246 RPHHNGAFRVCRFSLYGL-LDLLFISEHFSRVHVVDTRNYVNHQ 288 (344)
T ss_pred CCCCCCceEEEEecCCCc-ceEEEEecCcceEEEEEcccCceee
Confidence 233556799999998664 2467766667889999999876543
No 286
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.62 E-value=6.9e-06 Score=69.19 Aligned_cols=142 Identities=11% Similarity=0.098 Sum_probs=91.9
Q ss_pred CCeEEEEECCCCceeeEEeCCC----CCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCC--ceeEEEecccCCeeEE
Q 019349 112 REKTYIYDANTLAILDTIDTVP----NLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMEL--HSHCEIDAHQAPLAAI 185 (342)
Q Consensus 112 d~~i~i~d~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~--~~~~~~~~h~~~v~~i 185 (342)
.+.|.+|...-......++.-. ......++.+++-+.-+++.. .+|.+.+-+.... +.++.+++|.-+....
T Consensus 94 ~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~--s~G~~~~v~~t~~~le~vq~wk~He~E~Wta 171 (339)
T KOG0280|consen 94 RGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSD--SRGSISGVYETEMVLEKVQTWKVHEFEAWTA 171 (339)
T ss_pred cceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEc--CCCcEEEEecceeeeeecccccccceeeeee
Confidence 6778877664322222221110 011133455555555666665 4788886554443 3455889999999999
Q ss_pred EECC-CCCEEEEEeCCCcEEEEEEcC-CCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCC
Q 019349 186 VLSS-NGMYIATASEQGTIIRVFLVS-EATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFA 259 (342)
Q Consensus 186 ~~s~-dg~~lat~s~dg~~irlwd~~-~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~ 259 (342)
.|+. +-+.+.|||+||.+ .-||++ .++.+..- ...+...|.++.=+|... .++++|+-|-.|++||.+.-
T Consensus 172 ~f~~~~pnlvytGgDD~~l-~~~D~R~p~~~i~~n-~kvH~~GV~SI~ss~~~~--~~I~TGsYDe~i~~~DtRnm 243 (339)
T KOG0280|consen 172 KFSDKEPNLVYTGGDDGSL-SCWDIRIPKTFIWHN-SKVHTSGVVSIYSSPPKP--TYIATGSYDECIRVLDTRNM 243 (339)
T ss_pred ecccCCCceEEecCCCceE-EEEEecCCcceeeec-ceeeecceEEEecCCCCC--ceEEEeccccceeeeehhcc
Confidence 9986 44789999999985 799999 34443321 112344588887776543 29999999999999998854
No 287
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.58 E-value=5.2e-05 Score=68.03 Aligned_cols=116 Identities=17% Similarity=0.226 Sum_probs=87.5
Q ss_pred CCCCCeEEEEEcCCCCEEEEEcCCc--EEEEeCCCCcEE-EEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEE
Q 019349 5 SSSYPVFFVSFNQDNSGFALSTKDG--FKIFDSSTGRLC-YERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFN 81 (342)
Q Consensus 5 ~~~~~V~~l~fs~d~~~la~g~~~g--~~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd 81 (342)
.+.+.|+...+..+++-++.|..+| +-|||..+++.. .+...+.+..+....++.+++++-. ...|-+.|
T Consensus 357 ~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaNd-------r~el~vid 429 (668)
T COG4946 357 GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVAND-------RFELWVID 429 (668)
T ss_pred CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEcC-------ceEEEEEE
Confidence 4567799999999999999999887 699999999854 4445578888888888877766542 55677778
Q ss_pred CCCCcEEEE-EecCCceEEEEEcCCeEEEEE-------CCeEEEEECCCCceee
Q 019349 82 TTTGTALRE-LNFLTSILAVRLNKKRLVIVL-------REKTYIYDANTLAILD 127 (342)
Q Consensus 82 ~~~~~~~~~-~~~~~~v~~i~~~~~~~~~~~-------d~~i~i~d~~~~~~~~ 127 (342)
+.+|....- .....-|+.+.|+++...+|- ...|++||+.+++...
T Consensus 430 idngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~ 483 (668)
T COG4946 430 IDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYD 483 (668)
T ss_pred ecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEE
Confidence 888875432 223456899999999777765 3589999998876553
No 288
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.57 E-value=5.5e-05 Score=70.08 Aligned_cols=191 Identities=14% Similarity=0.103 Sum_probs=115.6
Q ss_pred CeEEEEEcCCCCE-EEE-EcCCc---EEEEeCCCCcEEEEE-eeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEEC
Q 019349 9 PVFFVSFNQDNSG-FAL-STKDG---FKIFDSSTGRLCYER-AVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNT 82 (342)
Q Consensus 9 ~V~~l~fs~d~~~-la~-g~~~g---~~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~ 82 (342)
.+..-+|+|||+. ++. ...++ +.++|+.+++...-. ..+......+.++++.+++.... ..+..|.++|+
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~----~g~~~Iy~~dl 264 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAP----KGQPDIYLYDT 264 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEcc----CCCcEEEEEEC
Confidence 6778999999985 554 33322 577799888543322 22334456788888887766542 12567888898
Q ss_pred CCCcEEEEEecCCceEEEEEcCCe--EEEEECC----eEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCC
Q 019349 83 TTGTALRELNFLTSILAVRLNKKR--LVIVLRE----KTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPAST 156 (342)
Q Consensus 83 ~~~~~~~~~~~~~~v~~i~~~~~~--~~~~~d~----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 156 (342)
.+++...-...+.......|+|++ ++..++. .|+++|+.+++..+.... ... ...++|++..+++....
T Consensus 265 ~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~~----~~~~SPDG~~Ia~~~~~ 339 (419)
T PRK04043 265 NTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GKN----NSSVSTYKNYIVYSSRE 339 (419)
T ss_pred CCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CCc----CceECCCCCEEEEEEcC
Confidence 877643322223223345687765 5555533 799999987765332211 111 12567888888877642
Q ss_pred Cc-------cEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCc--EEEEEEcC
Q 019349 157 TK-------GSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGT--IIRVFLVS 210 (342)
Q Consensus 157 ~~-------g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~--~irlwd~~ 210 (342)
.+ ..|.+.|+.+++. ..+... .......|+|||++|+..+.++. .+.+.++.
T Consensus 340 ~~~~~~~~~~~I~v~d~~~g~~-~~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~ 400 (419)
T PRK04043 340 TNNEFGKNTFNLYLISTNSDYI-RRLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLN 400 (419)
T ss_pred CCcccCCCCcEEEEEECCCCCe-EECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecC
Confidence 11 3788889887764 334332 22335789999999887765432 23455653
No 289
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.52 E-value=1.4e-06 Score=83.51 Aligned_cols=195 Identities=17% Similarity=0.187 Sum_probs=129.7
Q ss_pred EEEcCCeEEEEE-CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCceeEEEecc
Q 019349 100 VRLNKKRLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDAH 178 (342)
Q Consensus 100 i~~~~~~~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h 178 (342)
+...++.++.+. .+.+..+|+++.+..+....... ++..+..+ ++++.++. +.|+|.+-|.++.+.++++.+|
T Consensus 143 ~~~~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~--~v~imR~N--nr~lf~G~--t~G~V~LrD~~s~~~iht~~aH 216 (1118)
T KOG1275|consen 143 LHMGPSTLIMGGLQEKLIHIDLNTEKETRTTNVSAS--GVTIMRYN--NRNLFCGD--TRGTVFLRDPNSFETIHTFDAH 216 (1118)
T ss_pred hccCCcceeecchhhheeeeecccceeeeeeeccCC--ceEEEEec--CcEEEeec--ccceEEeecCCcCceeeeeecc
Confidence 334666666666 77888999998877766544332 34455543 44665554 7899999999999999999999
Q ss_pred cCCeeEEEECCCCCEEEEEeCCCc--------EEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCc
Q 019349 179 QAPLAAIVLSSNGMYIATASEQGT--------IIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGS 250 (342)
Q Consensus 179 ~~~v~~i~~s~dg~~lat~s~dg~--------~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~ 250 (342)
.+.|..+.. .|++|+|+|-.++ .++|||++..+.+..+.-...+ .-+.|+|.-. ..++++|..|.
T Consensus 217 s~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P---~flrf~Psl~--t~~~V~S~sGq 289 (1118)
T KOG1275|consen 217 SGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP---QFLRFHPSLT--TRLAVTSQSGQ 289 (1118)
T ss_pred ccceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc---hhhhhccccc--ceEEEEecccc
Confidence 999976655 6899999987543 3689999988766554322222 3467888754 38999999999
Q ss_pred EEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEEEEEEeCCcEEEEEEecCCCC
Q 019349 251 LHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSINNCC 325 (342)
Q Consensus 251 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~~~~~~~~ 325 (342)
.++-|..+-.++.- +. .+.+|.+.-.. .+.+.+.++.++.+-.+|.|..|. +.+.++
T Consensus 290 ~q~vd~~~lsNP~~--------~~-------~~v~p~~s~i~--~fDiSsn~~alafgd~~g~v~~wa-~~~~P~ 346 (1118)
T KOG1275|consen 290 FQFVDTATLSNPPA--------GV-------KMVNPNGSGIS--AFDISSNGDALAFGDHEGHVNLWA-DRPQPQ 346 (1118)
T ss_pred eeeccccccCCCcc--------ce-------eEEccCCCcce--eEEecCCCceEEEecccCcEeeec-CCCCCc
Confidence 99999544333220 00 01112111111 111133347899999999999998 444443
No 290
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.48 E-value=6.2e-07 Score=53.09 Aligned_cols=39 Identities=26% Similarity=0.399 Sum_probs=32.9
Q ss_pred CeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEe
Q 019349 212 ATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFS 255 (342)
Q Consensus 212 ~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd 255 (342)
|+++..+.. +...|.+|+|+|++. +|++++.|++|++||
T Consensus 1 g~~~~~~~~--h~~~i~~i~~~~~~~---~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRG--HSSSINSIAWSPDGN---FLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEES--SSSSEEEEEEETTSS---EEEEEETTSEEEEEE
T ss_pred CeEEEEEcC--CCCcEEEEEEecccc---cceeeCCCCEEEEEC
Confidence 355667754 356799999999998 999999999999997
No 291
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.47 E-value=2.8e-05 Score=73.00 Aligned_cols=223 Identities=11% Similarity=0.121 Sum_probs=135.2
Q ss_pred CCCCeEEEEEcCCCCEEEEEcCCcE-EEEeCCCCc-----------------EEEEEeeCCEEEEEEcCCCCeEEEEcCC
Q 019349 6 SSYPVFFVSFNQDNSGFALSTKDGF-KIFDSSTGR-----------------LCYERAVGAFSIVEMLYSSSLLAIVGAG 67 (342)
Q Consensus 6 ~~~~V~~l~fs~d~~~la~g~~~g~-~v~d~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~g 67 (342)
......|++|+....++|+|+.+|+ +|-.+.+.. ...+.|.+.+..+.|.-..+.+-. +.
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTt-SD- 90 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTT-SD- 90 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccc-cC-
Confidence 3456889999999999999999996 887654331 112334455666666544444433 22
Q ss_pred CCCCCCCCeEEEEECCCCcEEEEEe---cCCceEEEEEcCCe--EEEEE-CCeEEEEECCCCceee-EEeCCCCCceEEE
Q 019349 68 EQPSLSPRRLCLFNTTTGTALRELN---FLTSILAVRLNKKR--LVIVL-REKTYIYDANTLAILD-TIDTVPNLKGLCA 140 (342)
Q Consensus 68 ~~~~~~d~~i~iwd~~~~~~~~~~~---~~~~v~~i~~~~~~--~~~~~-d~~i~i~d~~~~~~~~-~~~~~~~~~~~~~ 140 (342)
.++-|.+|-+-+|....++. ..+-|.+++|+-++ +.++. ||.|.+=.+...+.-. .++ ......
T Consensus 91 -----t~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLk----g~~l~h 161 (1189)
T KOG2041|consen 91 -----TSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELK----GQLLAH 161 (1189)
T ss_pred -----CCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcc----hheccc
Confidence 47899999998887654432 24568899997664 44444 7777665554322111 111 111223
Q ss_pred EeeCCCccEEEEeCCCCccEEEEEEccCC-------ceeEEE----ecccCCeeEEEE--------CCCCCEEEEEeCCC
Q 019349 141 FSPSLNACFLAVPASTTKGSVLVYNVMEL-------HSHCEI----DAHQAPLAAIVL--------SSNGMYIATASEQG 201 (342)
Q Consensus 141 ~~~~~~~~~l~~~~~~~~g~i~iwd~~~~-------~~~~~~----~~h~~~v~~i~~--------s~dg~~lat~s~dg 201 (342)
+.+++|...+.+.- .+|.+.++|.+.. .+..+. ......|..+.| -||-..||.+-+.|
T Consensus 162 v~ws~D~~~~Lf~~--ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nG 239 (1189)
T KOG2041|consen 162 VLWSEDLEQALFKK--ANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANG 239 (1189)
T ss_pred eeecccHHHHHhhh--cCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCc
Confidence 45566665554443 5789999997532 121111 111222444554 35888999999999
Q ss_pred cEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCC
Q 019349 202 TIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSS 248 (342)
Q Consensus 202 ~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~d 248 (342)
++ ++-.-.+......+.. +..+..+.|+++|. .||+++.+
T Consensus 240 r~-QiMR~eND~~Pvv~dt---gm~~vgakWnh~G~---vLAvcG~~ 279 (1189)
T KOG2041|consen 240 RM-QIMRSENDPEPVVVDT---GMKIVGAKWNHNGA---VLAVCGND 279 (1189)
T ss_pred ee-hhhhhcCCCCCeEEec---ccEeecceecCCCc---EEEEccCc
Confidence 74 6655444433333332 24588899999999 99999876
No 292
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.47 E-value=0.00013 Score=61.61 Aligned_cols=199 Identities=11% Similarity=0.139 Sum_probs=123.0
Q ss_pred EEEcCCCCEEEEEcCCcEEEEeCCCC------cEEEEEe-eCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCC
Q 019349 13 VSFNQDNSGFALSTKDGFKIFDSSTG------RLCYERA-VGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTG 85 (342)
Q Consensus 13 l~fs~d~~~la~g~~~g~~v~d~~~~------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~ 85 (342)
++.++||+.||+-.+..+.+=..... +.....+ ...-.-++|.+++..++++.. .++|+++|+..
T Consensus 3 ~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S-------~G~i~vfdl~g- 74 (282)
T PF15492_consen 3 LALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAES-------TGTIRVFDLMG- 74 (282)
T ss_pred eeecCCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcC-------CCeEEEEeccc-
Confidence 56788999998877766655543221 1111111 133456778888888888765 79999999865
Q ss_pred cEEEEEec--------CCceEEEEEcCC--------eEEEE-ECCeEEEEECC-----CCceeeEEeCCC-CCceEEEEe
Q 019349 86 TALRELNF--------LTSILAVRLNKK--------RLVIV-LREKTYIYDAN-----TLAILDTIDTVP-NLKGLCAFS 142 (342)
Q Consensus 86 ~~~~~~~~--------~~~v~~i~~~~~--------~~~~~-~d~~i~i~d~~-----~~~~~~~~~~~~-~~~~~~~~~ 142 (342)
..+..+.. ...|.++.|-+. .+++. -.|.++-|-+. ..+..+++.... .+.++.++.
T Consensus 75 ~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~v 154 (282)
T PF15492_consen 75 SELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAV 154 (282)
T ss_pred ceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEE
Confidence 33333321 225566655221 33343 37777666543 224445554332 356888888
Q ss_pred eCCCccEEEEeCCCCcc---------EEEEEEccCCcee-----------------------EE---E---ecccCCeeE
Q 019349 143 PSLNACFLAVPASTTKG---------SVLVYNVMELHSH-----------------------CE---I---DAHQAPLAA 184 (342)
Q Consensus 143 ~~~~~~~l~~~~~~~~g---------~i~iwd~~~~~~~-----------------------~~---~---~~h~~~v~~ 184 (342)
.+|..++|..+|...+. -+..|.+-++.+. .. + ......|..
T Consensus 155 y~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~k 234 (282)
T PF15492_consen 155 YHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFK 234 (282)
T ss_pred EcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEE
Confidence 88887788877753222 2666765333210 01 0 113467889
Q ss_pred EEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEecc
Q 019349 185 IVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRR 220 (342)
Q Consensus 185 i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~ 220 (342)
|.+||||++||+...+|.+ -+|++.+-....++..
T Consensus 235 mSlSPdg~~La~ih~sG~l-sLW~iPsL~~~~~W~~ 269 (282)
T PF15492_consen 235 MSLSPDGSLLACIHFSGSL-SLWEIPSLRLQRSWKQ 269 (282)
T ss_pred EEECCCCCEEEEEEcCCeE-EEEecCcchhhcccch
Confidence 9999999999999999985 6999998877666643
No 293
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.46 E-value=5.3e-07 Score=77.36 Aligned_cols=143 Identities=7% Similarity=0.103 Sum_probs=96.6
Q ss_pred EEEECCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCC-----ceeEEEecccCCe
Q 019349 108 VIVLREKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMEL-----HSHCEIDAHQAPL 182 (342)
Q Consensus 108 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~-----~~~~~~~~h~~~v 182 (342)
.+..+..|-+-|++++- .+.+.+. ..+.++.+...+.++.. |. .+|.|..+|++.+ .+...+ -|.+.|
T Consensus 229 s~G~sqqv~L~nvetg~-~qsf~sk---sDVfAlQf~~s~nLv~~-Gc-RngeI~~iDLR~rnqG~~~~a~rl-yh~Ssv 301 (425)
T KOG2695|consen 229 SVGLSQQVLLTNVETGH-QQSFQSK---SDVFALQFAGSDNLVFN-GC-RNGEIFVIDLRCRNQGNGWCAQRL-YHDSSV 301 (425)
T ss_pred cccccceeEEEEeeccc-ccccccc---hhHHHHHhcccCCeeEe-cc-cCCcEEEEEeeecccCCCcceEEE-EcCcch
Confidence 34447788888888762 2233322 23555555543445544 44 6899999999865 233333 488999
Q ss_pred eEEEECC-CCCEEEEEeCCCcEEEEEEcCCCee---EEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCC
Q 019349 183 AAIVLSS-NGMYIATASEQGTIIRVFLVSEATK---SYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGF 258 (342)
Q Consensus 183 ~~i~~s~-dg~~lat~s~dg~~irlwd~~~~~~---~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~ 258 (342)
+++..-. ++++|.+.+-+|+ |++||.+.-+. +..+..|.....-.-+-..+.+. .++++++|-..+||.++.
T Consensus 302 tslq~Lq~s~q~LmaS~M~gk-ikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg---~I~s~GdDcytRiWsl~~ 377 (425)
T KOG2695|consen 302 TSLQILQFSQQKLMASDMTGK-IKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEG---SIFSVGDDCYTRIWSLDS 377 (425)
T ss_pred hhhhhhccccceEeeccCcCc-eeEeeehhhhcccceeeeecccccccccccccccccc---eEEEccCeeEEEEEeccc
Confidence 9998877 8899999999998 69999987665 66665443322222233456666 899999999999999986
Q ss_pred CCC
Q 019349 259 AIN 261 (342)
Q Consensus 259 ~~~ 261 (342)
+..
T Consensus 378 ghL 380 (425)
T KOG2695|consen 378 GHL 380 (425)
T ss_pred Cce
Confidence 653
No 294
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.45 E-value=2.7e-05 Score=65.71 Aligned_cols=179 Identities=13% Similarity=0.119 Sum_probs=108.6
Q ss_pred CCeEEEEECCCCcEEEEEecCC----c---eEEEEEc--CCeEEEEE-CCeEEEEECCCCceee--EEeCCCCCceEEEE
Q 019349 74 PRRLCLFNTTTGTALRELNFLT----S---ILAVRLN--KKRLVIVL-REKTYIYDANTLAILD--TIDTVPNLKGLCAF 141 (342)
Q Consensus 74 d~~i~iwd~~~~~~~~~~~~~~----~---v~~i~~~--~~~~~~~~-d~~i~i~d~~~~~~~~--~~~~~~~~~~~~~~ 141 (342)
.+.|.++...-......++.-+ . ..++.++ ...+++.. ++.+.+-+...+.+.. +++.|.-+ ....
T Consensus 94 ~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E--~Wta 171 (339)
T KOG0280|consen 94 RGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFE--AWTA 171 (339)
T ss_pred cceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeeccccccccee--eeee
Confidence 5677777654333222222110 1 2334443 33444433 5667655544443332 44443332 3333
Q ss_pred eeCCCccEEEEeCCCCccEEEEEEccC-CceeEE-EecccCCeeEEEECC-CCCEEEEEeCCCcEEEEEEcCC-CeeEEE
Q 019349 142 SPSLNACFLAVPASTTKGSVLVYNVME-LHSHCE-IDAHQAPLAAIVLSS-NGMYIATASEQGTIIRVFLVSE-ATKSYS 217 (342)
Q Consensus 142 ~~~~~~~~l~~~~~~~~g~i~iwd~~~-~~~~~~-~~~h~~~v~~i~~s~-dg~~lat~s~dg~~irlwd~~~-~~~~~~ 217 (342)
.++.....+++.|+ .|+.+..||++. ++.+.. .+-|...|.+|.-+| .+.+|+||+-|.. |++||.++ ++.+..
T Consensus 172 ~f~~~~pnlvytGg-DD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~-i~~~DtRnm~kPl~~ 249 (339)
T KOG0280|consen 172 KFSDKEPNLVYTGG-DDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDEC-IRVLDTRNMGKPLFK 249 (339)
T ss_pred ecccCCCceEEecC-CCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccc-eeeeehhcccCcccc
Confidence 33333334555555 699999999993 334433 567999999998886 6889999999986 69999995 555543
Q ss_pred eccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCC
Q 019349 218 FRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAIN 261 (342)
Q Consensus 218 ~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~ 261 (342)
-. ..+.|+.+..+|.-. +.|++++.-+-.+|-+++....
T Consensus 250 ~~---v~GGVWRi~~~p~~~--~~lL~~CMh~G~ki~~~~~~~~ 288 (339)
T KOG0280|consen 250 AK---VGGGVWRIKHHPEIF--HRLLAACMHNGAKILDSSDKVL 288 (339)
T ss_pred Cc---cccceEEEEecchhh--hHHHHHHHhcCceEEEeccccc
Confidence 22 235599999998754 3567777777788888876654
No 295
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.45 E-value=8.5e-07 Score=80.51 Aligned_cols=231 Identities=12% Similarity=0.143 Sum_probs=140.1
Q ss_pred CCCCCeEEE-EEcCCCCEEEEEcCCcEEEEeCCCC---------cEEEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCC
Q 019349 5 SSSYPVFFV-SFNQDNSGFALSTKDGFKIFDSSTG---------RLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSP 74 (342)
Q Consensus 5 ~~~~~V~~l-~fs~d~~~la~g~~~g~~v~d~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d 74 (342)
.+...|+.+ +.+..+.++.++.++++++|.+.+- +..|..|..++..+.++.+-..++.+ |
T Consensus 733 GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc---------D 803 (1034)
T KOG4190|consen 733 GHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC---------D 803 (1034)
T ss_pred CcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec---------c
Confidence 445556655 3444555555556667899987542 23455555666666666555555433 7
Q ss_pred CeEEEEECCCCcEEEEEec---CC---ceEEEEEcCCeEEEEE---CCeEEEEECCCCceeeEEeCC--CCC-ceEEEEe
Q 019349 75 RRLCLFNTTTGTALRELNF---LT---SILAVRLNKKRLVIVL---REKTYIYDANTLAILDTIDTV--PNL-KGLCAFS 142 (342)
Q Consensus 75 ~~i~iwd~~~~~~~~~~~~---~~---~v~~i~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~--~~~-~~~~~~~ 142 (342)
+.|++||.-.++.+..+.- .+ .|.++.--...++++. ..+++++|-+...-..+++.. +.+ ...-+++
T Consensus 804 ~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~ia 883 (1034)
T KOG4190|consen 804 GGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIA 883 (1034)
T ss_pred CcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEE
Confidence 7999999888877654421 22 3444332223344443 679999999988766666544 222 2334555
Q ss_pred eCCCccEEEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEE-EEcCCCeeEEEeccC
Q 019349 143 PSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRV-FLVSEATKSYSFRRG 221 (342)
Q Consensus 143 ~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irl-wd~~~~~~~~~~~~~ 221 (342)
..+.+..+|.+- .+|+|.+.|.++|+.+..+..-+-....++ .|..+.|+....|.++ -+ |..-+|......+..
T Consensus 884 Va~~GN~lAa~L--SnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHsl-aVnWhaldgimh~q~kpp 959 (1034)
T KOG4190|consen 884 VADKGNKLAAAL--SNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSL-AVNWHALDGIMHLQDKPP 959 (1034)
T ss_pred eccCcchhhHHh--cCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhccccee-EeeehhcCCeeeeccCCC
Confidence 556667888776 479999999999998766654333333333 3666778887778775 46 988777665555433
Q ss_pred cCceeEEEEEEecCCCcccEEEEEeCCCcEEEEe
Q 019349 222 TYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFS 255 (342)
Q Consensus 222 ~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd 255 (342)
..+++. +-.-|. -|+++...+.+.||.
T Consensus 960 pepahf----lqsvgp---SLV~a~~Gn~lgVYa 986 (1034)
T KOG4190|consen 960 PEPAHF----LQSVGP---SLVTAQNGNILGVYA 986 (1034)
T ss_pred Ccchhh----hhccCc---eeEEeccCcEEEEEe
Confidence 223221 011233 466666666777774
No 296
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.43 E-value=1.5e-06 Score=74.69 Aligned_cols=150 Identities=11% Similarity=0.101 Sum_probs=104.0
Q ss_pred CCEEEEEcCCcEEEEeCCCCcEEEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCC-----cEEEEEec
Q 019349 19 NSGFALSTKDGFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTG-----TALRELNF 93 (342)
Q Consensus 19 ~~~la~g~~~g~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~-----~~~~~~~~ 93 (342)
|-.+++|.+.++-+-|+++|-...-.....+-...++... .+++.|. ..+.|...|++.+ .+...+-+
T Consensus 225 gyhfs~G~sqqv~L~nvetg~~qsf~sksDVfAlQf~~s~-nLv~~Gc------RngeI~~iDLR~rnqG~~~~a~rlyh 297 (425)
T KOG2695|consen 225 GYHFSVGLSQQVLLTNVETGHQQSFQSKSDVFALQFAGSD-NLVFNGC------RNGEIFVIDLRCRNQGNGWCAQRLYH 297 (425)
T ss_pred eeeecccccceeEEEEeecccccccccchhHHHHHhcccC-CeeEecc------cCCcEEEEEeeecccCCCcceEEEEc
Confidence 3446677777788888887744332233344333443333 3445554 5789999999753 56777788
Q ss_pred CCceEEEEE---cCCeEEEEE-CCeEEEEECCCCce---eeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEc
Q 019349 94 LTSILAVRL---NKKRLVIVL-REKTYIYDANTLAI---LDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNV 166 (342)
Q Consensus 94 ~~~v~~i~~---~~~~~~~~~-d~~i~i~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~ 166 (342)
++.|+++.. +...+++.. +++|++||++--++ +.+++.|.+...-.-+..++.+..++++| +|-..+||.+
T Consensus 298 ~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~G--dDcytRiWsl 375 (425)
T KOG2695|consen 298 DSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVG--DDCYTRIWSL 375 (425)
T ss_pred CcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEcc--CeeEEEEEec
Confidence 888887654 455555544 89999999986665 88888887765555555566666777777 6999999999
Q ss_pred cCCceeEEEec
Q 019349 167 MELHSHCEIDA 177 (342)
Q Consensus 167 ~~~~~~~~~~~ 177 (342)
+.+..+.+++.
T Consensus 376 ~~ghLl~tipf 386 (425)
T KOG2695|consen 376 DSGHLLCTIPF 386 (425)
T ss_pred ccCceeeccCC
Confidence 99998888764
No 297
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.43 E-value=0.0008 Score=62.41 Aligned_cols=194 Identities=11% Similarity=0.059 Sum_probs=116.0
Q ss_pred EEEEEEcCCCCe-EEEEcCCCCCCCCCCeEEEEECCCCcEEEEEecCCceEEEEEcCCe--EEEEE----CCeEEEEECC
Q 019349 49 FSIVEMLYSSSL-LAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKR--LVIVL----REKTYIYDAN 121 (342)
Q Consensus 49 ~~~~~~~~~~~~-~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~i~~~~~~--~~~~~----d~~i~i~d~~ 121 (342)
...-.+.++++. +++.+... ....|.++|+.+++...-...+.......|+|+. +++.. +..|+++|+.
T Consensus 190 ~~~p~wSpDG~~~i~y~s~~~----~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~ 265 (419)
T PRK04043 190 NIFPKWANKEQTAFYYTSYGE----RKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTN 265 (419)
T ss_pred eEeEEECCCCCcEEEEEEccC----CCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECC
Confidence 334567777774 55554321 1357999999988765554555556667788875 44333 2479999998
Q ss_pred CCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCC-CccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCC
Q 019349 122 TLAILDTIDTVPNLKGLCAFSPSLNACFLAVPAST-TKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQ 200 (342)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~d 200 (342)
+++.. .+..... ......++||+..|++.+.. ....|.++|+.+++..+.... ... ...|||||++|+..+..
T Consensus 266 ~g~~~-~LT~~~~--~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~~--~~~~SPDG~~Ia~~~~~ 339 (419)
T PRK04043 266 TKTLT-QITNYPG--IDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GKN--NSSVSTYKNYIVYSSRE 339 (419)
T ss_pred CCcEE-EcccCCC--ccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CCc--CceECCCCCEEEEEEcC
Confidence 77533 3322221 12233567788777766531 123688888887765332221 111 24899999999887754
Q ss_pred C--------cEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCC-Cc--EEEEecCCC
Q 019349 201 G--------TIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSS-GS--LHVFSPGFA 259 (342)
Q Consensus 201 g--------~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~d-g~--i~vwd~~~~ 259 (342)
. .-|.+.|+.+++. ..+..+. .....+|+|||+ +|+..+.+ +. +.+.+++..
T Consensus 340 ~~~~~~~~~~~I~v~d~~~g~~-~~LT~~~---~~~~p~~SPDG~---~I~f~~~~~~~~~L~~~~l~g~ 402 (419)
T PRK04043 340 TNNEFGKNTFNLYLISTNSDYI-RRLTANG---VNQFPRFSSDGG---SIMFIKYLGNQSALGIIRLNYN 402 (419)
T ss_pred CCcccCCCCcEEEEEECCCCCe-EECCCCC---CcCCeEECCCCC---EEEEEEccCCcEEEEEEecCCC
Confidence 2 2346778877754 3343221 123578999998 77666543 33 556666543
No 298
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.41 E-value=2.2e-07 Score=88.51 Aligned_cols=207 Identities=15% Similarity=0.150 Sum_probs=135.0
Q ss_pred CCCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcEEEEE--eeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEE
Q 019349 5 SSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYER--AVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFN 81 (342)
Q Consensus 5 ~~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd 81 (342)
.++..-+|++|+-+.++|++|+-.| +++|++.+|...-.. |...+..+....+++.+++.+.- +.--..+|+
T Consensus 1099 d~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~-----S~PlsaLW~ 1173 (1516)
T KOG1832|consen 1099 DETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSS-----SSPLSALWD 1173 (1516)
T ss_pred ccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccc-----cCchHHHhc
Confidence 4567789999999999999998877 799999999765443 44455556666666777776653 222567999
Q ss_pred CCC-CcEEEEEecCCceEEEEEcCCe--EEEEE-CCeEEEEECCCCceeeEEeCCC--CCceEEEEeeCCCccEEEEeCC
Q 019349 82 TTT-GTALRELNFLTSILAVRLNKKR--LVIVL-REKTYIYDANTLAILDTIDTVP--NLKGLCAFSPSLNACFLAVPAS 155 (342)
Q Consensus 82 ~~~-~~~~~~~~~~~~v~~i~~~~~~--~~~~~-d~~i~i~d~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~ 155 (342)
+.. +...+++.. -.++.|++.. .++.+ .+...+||+++...+.++-+.. +...-.+.+++|+..++.
T Consensus 1174 ~~s~~~~~Hsf~e---d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl---- 1246 (1516)
T KOG1832|consen 1174 ASSTGGPRHSFDE---DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL---- 1246 (1516)
T ss_pred cccccCccccccc---cceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe----
Confidence 853 445555543 3456665542 23333 5688999999987666632211 111123445566665654
Q ss_pred CCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecC
Q 019349 156 TTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQS 235 (342)
Q Consensus 156 ~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d 235 (342)
.|| .+||++..+.++.|......+.. .|+|.|+.++..+ .|||+++-+.++..+. - .-..+.|+..
T Consensus 1247 -ndG--vLWDvR~~~aIh~FD~ft~~~~G-~FHP~g~eVIINS------EIwD~RTF~lLh~VP~-L---dqc~VtFNst 1312 (1516)
T KOG1832|consen 1247 -NDG--VLWDVRIPEAIHRFDQFTDYGGG-GFHPSGNEVIINS------EIWDMRTFKLLHSVPS-L---DQCAVTFNST 1312 (1516)
T ss_pred -eCc--eeeeeccHHHHhhhhhheecccc-cccCCCceEEeec------hhhhhHHHHHHhcCcc-c---cceEEEeccC
Confidence 344 47999988877766544432222 3999999999864 3799999887765531 1 1345789888
Q ss_pred CC
Q 019349 236 MQ 237 (342)
Q Consensus 236 ~~ 237 (342)
|.
T Consensus 1313 G~ 1314 (1516)
T KOG1832|consen 1313 GD 1314 (1516)
T ss_pred cc
Confidence 86
No 299
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.41 E-value=1.6e-05 Score=68.50 Aligned_cols=187 Identities=13% Similarity=0.101 Sum_probs=123.0
Q ss_pred eEEEEE-CCeEEEEECC-CCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEcc----CCceeEEEeccc
Q 019349 106 RLVIVL-REKTYIYDAN-TLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVM----ELHSHCEIDAHQ 179 (342)
Q Consensus 106 ~~~~~~-d~~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~----~~~~~~~~~~h~ 179 (342)
+++.++ |.+++||--. .++.-..+ .+..|....+++..++...|.++- .+|++.-+-+. .....+...+|.
T Consensus 38 gv~~~s~drtvrv~lkrds~q~wpsI-~~~mP~~~~~~~y~~e~~~L~vg~--~ngtvtefs~sedfnkm~~~r~~~~h~ 114 (404)
T KOG1409|consen 38 GVISVSEDRTVRVWLKRDSGQYWPSI-YHYMPSPCSAMEYVSESRRLYVGQ--DNGTVTEFALSEDFNKMTFLKDYLAHQ 114 (404)
T ss_pred CeEEccccceeeeEEeccccccCchh-hhhCCCCceEeeeeccceEEEEEE--ecceEEEEEhhhhhhhcchhhhhhhhh
Confidence 444444 7799999554 34333333 345677788888888777776654 57888888653 334556677899
Q ss_pred CCeeEEEECCCCCEEEEEeCCCcEEEEEEc-CCCe-----------------------------------------eEEE
Q 019349 180 APLAAIVLSSNGMYIATASEQGTIIRVFLV-SEAT-----------------------------------------KSYS 217 (342)
Q Consensus 180 ~~v~~i~~s~dg~~lat~s~dg~~irlwd~-~~~~-----------------------------------------~~~~ 217 (342)
.+|..+.|+-.-+.+++.+.|.. + .|.. +.+. .+.+
T Consensus 115 ~~v~~~if~~~~e~V~s~~~dk~-~-~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~ 192 (404)
T KOG1409|consen 115 ARVSAIVFSLTHEWVLSTGKDKQ-F-AWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITT 192 (404)
T ss_pred cceeeEEecCCceeEEEeccccc-e-EEEeeccCCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEE
Confidence 99999999988899999988854 3 3432 1111 1222
Q ss_pred eccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccC
Q 019349 218 FRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFP 297 (342)
Q Consensus 218 ~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (342)
+.. +...+.+++|.|... +|.++..|..|-+||+...+... +......+.+..+|...-
T Consensus 193 ~~~--h~~~~~~l~Wd~~~~---~LfSg~~d~~vi~wdigg~~g~~-------~el~gh~~kV~~l~~~~~--------- 251 (404)
T KOG1409|consen 193 FNG--HTGEVTCLKWDPGQR---LLFSGASDHSVIMWDIGGRKGTA-------YELQGHNDKVQALSYAQH--------- 251 (404)
T ss_pred EcC--cccceEEEEEcCCCc---EEEeccccCceEEEeccCCccee-------eeeccchhhhhhhhhhhh---------
Confidence 221 234589999999988 99999999999999997554211 000111122233333321
Q ss_pred CCccccEEEEEEeCCcEEEEEEecC
Q 019349 298 AGVKRASVSVITYNGYFVEYIFSIN 322 (342)
Q Consensus 298 ~~~~~~~l~~~~~dg~v~~~~~~~~ 322 (342)
-.+++++++||.|..|+++-.
T Consensus 252 ----t~~l~S~~edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 252 ----TRQLISCGEDGGIVVWNMNVK 272 (404)
T ss_pred ----heeeeeccCCCeEEEEeccce
Confidence 167999999999999998743
No 300
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.40 E-value=2e-05 Score=72.65 Aligned_cols=75 Identities=13% Similarity=0.191 Sum_probs=61.6
Q ss_pred cccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEec
Q 019349 177 AHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSP 256 (342)
Q Consensus 177 ~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~ 256 (342)
...+.|.|++++|+...|+.|+.||++ .+||...+..... .. .-..+.++|+|+|. ++++|++.|.+.+||+
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSi-iLyD~~~~~t~~~--ka--~~~P~~iaWHp~ga---i~~V~s~qGelQ~FD~ 328 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSI-ILYDTTRGVTLLA--KA--EFIPTLIAWHPDGA---IFVVGSEQGELQCFDM 328 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeE-EEEEcCCCeeeee--ee--cccceEEEEcCCCc---EEEEEcCCceEEEEEe
Confidence 467889999999999999999999996 5999987643322 11 22367899999999 9999999999999998
Q ss_pred CCC
Q 019349 257 GFA 259 (342)
Q Consensus 257 ~~~ 259 (342)
.-.
T Consensus 329 ALs 331 (545)
T PF11768_consen 329 ALS 331 (545)
T ss_pred ecC
Confidence 653
No 301
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.37 E-value=1.9e-06 Score=80.54 Aligned_cols=122 Identities=16% Similarity=0.165 Sum_probs=98.2
Q ss_pred CCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCc---------------eeEEEecccCCeeEEEECCCCCEEEEE
Q 019349 133 PNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELH---------------SHCEIDAHQAPLAAIVLSSNGMYIATA 197 (342)
Q Consensus 133 ~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~---------------~~~~~~~h~~~v~~i~~s~dg~~lat~ 197 (342)
++...+-+++++.+..++|++| .||-+++..+.+.. .-+++.+|...|.-+.|+.+.+.|-|.
T Consensus 12 PnnvkL~c~~WNke~gyIAcgG--~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtS 89 (1189)
T KOG2041|consen 12 PNNVKLHCAEWNKESGYIACGG--ADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTS 89 (1189)
T ss_pred CCCceEEEEEEcccCCeEEecc--ccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecccccccccc
Confidence 3445677888988888999998 69999998775321 124678999999999999999999999
Q ss_pred eCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCC
Q 019349 198 SEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAI 260 (342)
Q Consensus 198 s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~ 260 (342)
..+|-+ -+|-+-.|.-..++......+.|.+|+|+.||. .++...+||.|-|=.++.+.
T Consensus 90 Dt~GlI-iVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~---kIcIvYeDGavIVGsvdGNR 148 (1189)
T KOG2041|consen 90 DTSGLI-IVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGT---KICIVYEDGAVIVGSVDGNR 148 (1189)
T ss_pred CCCceE-EEEeeecccHHHHHhhCcCccEEEEEEEcCCCc---EEEEEEccCCEEEEeeccce
Confidence 999965 599999887655554444456699999999999 99999999999888777543
No 302
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.35 E-value=0.00069 Score=64.31 Aligned_cols=191 Identities=16% Similarity=0.133 Sum_probs=106.0
Q ss_pred EEEEEcCCc-EEEEeCCCCcEEEEEeeCCE------EEEE--EcCCC-CeEEEEcCCCCCCCCCCeEEEEECCCCcEEEE
Q 019349 21 GFALSTKDG-FKIFDSSTGRLCYERAVGAF------SIVE--MLYSS-SLLAIVGAGEQPSLSPRRLCLFNTTTGTALRE 90 (342)
Q Consensus 21 ~la~g~~~g-~~v~d~~~~~~~~~~~~~~~------~~~~--~~~~~-~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~ 90 (342)
.+.+++.++ +.-.|..+++++.......- ..+. ..... +.+. ++. .++.|.-+|.++|+.+..
T Consensus 63 ~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~-v~~------~~g~v~AlD~~TG~~~W~ 135 (488)
T cd00216 63 DMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVF-FGT------FDGRLVALDAETGKQVWK 135 (488)
T ss_pred EEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEE-Eec------CCCeEEEEECCCCCEeee
Confidence 455555444 57778888887755432111 0000 00111 3333 333 378999999999999988
Q ss_pred EecCCc------eE-EEEEcCCeEEEEE----------CCeEEEEECCCCceeeEEeCCCCCc-e---------------
Q 019349 91 LNFLTS------IL-AVRLNKKRLVIVL----------REKTYIYDANTLAILDTIDTVPNLK-G--------------- 137 (342)
Q Consensus 91 ~~~~~~------v~-~i~~~~~~~~~~~----------d~~i~i~d~~~~~~~~~~~~~~~~~-~--------------- 137 (342)
...... +. +..+..+.+++.. ++.++.+|..+++.+..++...... .
T Consensus 136 ~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g 215 (488)
T cd00216 136 FGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGG 215 (488)
T ss_pred ecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCC
Confidence 876543 21 2233344444433 3578899999999888776532110 0
Q ss_pred --E-EEEeeCCCccEEEEeCCC----------------CccEEEEEEccCCceeEEEec--ccC----CeeEEEE----C
Q 019349 138 --L-CAFSPSLNACFLAVPAST----------------TKGSVLVYNVMELHSHCEIDA--HQA----PLAAIVL----S 188 (342)
Q Consensus 138 --~-~~~~~~~~~~~l~~~~~~----------------~~g~i~iwd~~~~~~~~~~~~--h~~----~v~~i~~----s 188 (342)
+ ...+.++.+..++++..+ .++.|.-+|..+++.+-.++. |.. ......+ .
T Consensus 216 ~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~ 295 (488)
T cd00216 216 GTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKP 295 (488)
T ss_pred CCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccc
Confidence 0 011122222234333310 123799999999998765532 211 0000011 1
Q ss_pred CCCC---EEEEEeCCCcEEEEEEcCCCeeEEEec
Q 019349 189 SNGM---YIATASEQGTIIRVFLVSEATKSYSFR 219 (342)
Q Consensus 189 ~dg~---~lat~s~dg~~irlwd~~~~~~~~~~~ 219 (342)
-+|. .++.++.+|.+ ...|.++|+.+.+..
T Consensus 296 ~~g~~~~~V~~g~~~G~l-~ald~~tG~~~W~~~ 328 (488)
T cd00216 296 KDGKPVPAIVHAPKNGFF-YVLDRTTGKLISARP 328 (488)
T ss_pred cCCCeeEEEEEECCCceE-EEEECCCCcEeeEeE
Confidence 2343 57778888985 699999999887764
No 303
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.33 E-value=0.00041 Score=69.12 Aligned_cols=275 Identities=15% Similarity=0.137 Sum_probs=155.9
Q ss_pred CCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcEEEE-EeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCC
Q 019349 7 SYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYE-RAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTT 84 (342)
Q Consensus 7 ~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~ 84 (342)
+..|.++.|-.+...++.+...| +.+-|.++..+... ....+|...+|.++...++++++ .+++.+ ...+
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~-------~~tll~-mT~~ 139 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITG-------RQTLLF-MTKD 139 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeC-------CcEEEE-Eecc
Confidence 36899999999999998888877 56668888755433 33478999999999999999987 345443 3333
Q ss_pred CcEEEEEec------CCceEEEEEcCCeEEE-EECCeEEEEECCC-CceeeEEeCCCCCceEEEEeeCCCccEEEEeC--
Q 019349 85 GTALRELNF------LTSILAVRLNKKRLVI-VLREKTYIYDANT-LAILDTIDTVPNLKGLCAFSPSLNACFLAVPA-- 154 (342)
Q Consensus 85 ~~~~~~~~~------~~~v~~i~~~~~~~~~-~~d~~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-- 154 (342)
-.++.+... .+....+-|.+..... ...++..-.+... .+....++.+ ..-..+++-+|+.++|+..
T Consensus 140 f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~---~~~~~IsWRgDg~~fAVs~~~ 216 (1265)
T KOG1920|consen 140 FEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQD---DHKTSISWRGDGEYFAVSFVE 216 (1265)
T ss_pred ccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhc---cCCceEEEccCCcEEEEEEEe
Confidence 333332221 1223334443322111 1122211111110 0111111111 1234578888888888732
Q ss_pred CCCc-cEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEe---CCCcEEEEEEcCCCeeEEEecc--CcCceeEE
Q 019349 155 STTK-GSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATAS---EQGTIIRVFLVSEATKSYSFRR--GTYPSTIF 228 (342)
Q Consensus 155 ~~~~-g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s---~dg~~irlwd~~~~~~~~~~~~--~~~~~~v~ 228 (342)
...+ ..|++||.+ +..-.+-..-...=.+++|-|.|.++|+-. .|++ |.+|- ++|-.-.+|.. .....++.
T Consensus 217 ~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~-IvffE-rNGL~hg~f~l~~p~de~~ve 293 (1265)
T KOG1920|consen 217 SETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSD-IVFFE-RNGLRHGEFVLPFPLDEKEVE 293 (1265)
T ss_pred ccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCc-EEEEe-cCCccccccccCCcccccchh
Confidence 1123 789999976 432221112223346789999999999863 3445 43665 45644333321 12233489
Q ss_pred EEEEecCCCcccEEEE---EeCCCcEEEEecCCCCCCCCCCCccccccc--cccccccccccccccceeeeccCCCcccc
Q 019349 229 SLSFGQSMQFQDILVA---TSSSGSLHVFSPGFAINQRRGGRTSSILGS--ILPESVNEVLDPADHHVLRNAFPAGVKRA 303 (342)
Q Consensus 229 ~l~fs~d~~~~~~l~~---~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (342)
.++|+.++. .||+ ......|++|-+..-. .++.. ..|.....+|+|... .
T Consensus 294 ~L~Wns~sd---iLAv~~~~~e~~~v~lwt~~Nyh---------WYLKq~l~~~~~~~~~W~p~~~-------------~ 348 (1265)
T KOG1920|consen 294 ELAWNSNSD---ILAVVTSNLENSLVQLWTTGNYH---------WYLKQELQFSQKALLMWDPVTE-------------K 348 (1265)
T ss_pred eeeecCCCC---ceeeeecccccceEEEEEecCeE---------EEEEEEEeccccccccccCCCc-------------e
Confidence 999999998 8888 4444459999865421 11211 122333368888542 4
Q ss_pred EEEEEEeCCcEEEEEEe
Q 019349 304 SVSVITYNGYFVEYIFS 320 (342)
Q Consensus 304 ~l~~~~~dg~v~~~~~~ 320 (342)
+|.+-+.+|.+.++++-
T Consensus 349 ~L~v~~~sG~~~v~~~~ 365 (1265)
T KOG1920|consen 349 TLHVLRESGQRLVRDFA 365 (1265)
T ss_pred eEEEEecCCcEEEEEEE
Confidence 56666677776666654
No 304
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.31 E-value=0.00057 Score=60.10 Aligned_cols=222 Identities=17% Similarity=0.175 Sum_probs=122.8
Q ss_pred cEEEEeCCCCcEEEEEeeCCEEEEEEcCCCCeEEEEcC----CCCCCCCCCeEEEEECCCCcEEEEEecCCceEE-----
Q 019349 29 GFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGA----GEQPSLSPRRLCLFNTTTGTALRELNFLTSILA----- 99 (342)
Q Consensus 29 g~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----g~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~----- 99 (342)
.+.|+|.++++++-....+-...+.+.++.+.+.++.. +..+ -..-.|.+||.++-....++..+..-+.
T Consensus 18 rv~viD~d~~k~lGmi~~g~~~~~~~spdgk~~y~a~T~~sR~~rG-~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~ 96 (342)
T PF06433_consen 18 RVYVIDADSGKLLGMIDTGFLGNVALSPDGKTIYVAETFYSRGTRG-ERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPY 96 (342)
T ss_dssp EEEEEETTTTEEEEEEEEESSEEEEE-TTSSEEEEEEEEEEETTEE-EEEEEEEEEETTTTEEEEEEEETTS-B--BS--
T ss_pred eEEEEECCCCcEEEEeecccCCceeECCCCCEEEEEEEEEeccccc-cceeEEEEEecCcCcccceEecCCcchheeccc
Confidence 46788999988776655555555556677776654432 1000 0123489999999999998887753111
Q ss_pred ---EEEcCC--eEEEEE---CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEcc-CCc
Q 019349 100 ---VRLNKK--RLVIVL---REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVM-ELH 170 (342)
Q Consensus 100 ---i~~~~~--~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~-~~~ 170 (342)
+.++.+ .+++.. ...|-|-|+...+.+.++.++ ++..+-|.++..+...|+ ||.+.-..+. .|+
T Consensus 97 ~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P----GC~~iyP~~~~~F~~lC~---DGsl~~v~Ld~~Gk 169 (342)
T PF06433_consen 97 KNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTP----GCWLIYPSGNRGFSMLCG---DGSLLTVTLDADGK 169 (342)
T ss_dssp GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGT----SEEEEEEEETTEEEEEET---TSCEEEEEETSTSS
T ss_pred ccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCC----CEEEEEecCCCceEEEec---CCceEEEEECCCCC
Confidence 223222 222222 346666677777777777653 233344445444555554 6777766664 333
Q ss_pred eeEEE--------------------------ecccCCeeE---------------------------------EEECCCC
Q 019349 171 SHCEI--------------------------DAHQAPLAA---------------------------------IVLSSNG 191 (342)
Q Consensus 171 ~~~~~--------------------------~~h~~~v~~---------------------------------i~~s~dg 191 (342)
..... ....+.|.. +++++..
T Consensus 170 ~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~ 249 (342)
T PF06433_consen 170 EAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAAS 249 (342)
T ss_dssp EEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTT
T ss_pred EeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeecccc
Confidence 22111 111122333 3333322
Q ss_pred CEEEEE---eCC------CcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEe-CCCcEEEEecCCCCC
Q 019349 192 MYIATA---SEQ------GTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATS-SSGSLHVFSPGFAIN 261 (342)
Q Consensus 192 ~~lat~---s~d------g~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s-~dg~i~vwd~~~~~~ 261 (342)
+.|..- +.+ |+-|=++|+.+++.+.++.. ..++.+|+.+.|.+ ++|.+.+ .++.+.|||..+++.
T Consensus 250 ~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l---~~~~~Si~Vsqd~~--P~L~~~~~~~~~l~v~D~~tGk~ 324 (342)
T PF06433_consen 250 GRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL---EHPIDSIAVSQDDK--PLLYALSAGDGTLDVYDAATGKL 324 (342)
T ss_dssp TEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE---EEEESEEEEESSSS---EEEEEETTTTEEEEEETTT--E
T ss_pred CeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC---CCccceEEEccCCC--cEEEEEcCCCCeEEEEeCcCCcE
Confidence 222221 011 22234668888888888753 23577999999887 5776654 579999999998876
Q ss_pred CC
Q 019349 262 QR 263 (342)
Q Consensus 262 ~~ 263 (342)
.+
T Consensus 325 ~~ 326 (342)
T PF06433_consen 325 VR 326 (342)
T ss_dssp EE
T ss_pred Ee
Confidence 44
No 305
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.30 E-value=0.0019 Score=56.12 Aligned_cols=231 Identities=13% Similarity=0.085 Sum_probs=134.0
Q ss_pred CCCeEEEEEcC-CCCEEEEEcCCc--EEEEeCCCCcEEEEEee---CC-EEEEEEcCCCCeEEEEcCCCCCCCCCCeEEE
Q 019349 7 SYPVFFVSFNQ-DNSGFALSTKDG--FKIFDSSTGRLCYERAV---GA-FSIVEMLYSSSLLAIVGAGEQPSLSPRRLCL 79 (342)
Q Consensus 7 ~~~V~~l~fs~-d~~~la~g~~~g--~~v~d~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~i 79 (342)
+...-.++.+| +...++.+---| +.+||+.+++....... .. .....+..+++.+.+.-.... ...+.|-|
T Consensus 4 P~RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~--~g~G~IgV 81 (305)
T PF07433_consen 4 PARGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYE--TGRGVIGV 81 (305)
T ss_pred CccccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccC--CCcEEEEE
Confidence 34556788999 555567777666 48999999977654322 11 223456667777766544321 24688999
Q ss_pred EECC-CCcEEEEEecCC-ceEEEEEcCCe--EEEEE-------------------CCeEEEEECCCCceeeEEeCCC--C
Q 019349 80 FNTT-TGTALRELNFLT-SILAVRLNKKR--LVIVL-------------------REKTYIYDANTLAILDTIDTVP--N 134 (342)
Q Consensus 80 wd~~-~~~~~~~~~~~~-~v~~i~~~~~~--~~~~~-------------------d~~i~i~d~~~~~~~~~~~~~~--~ 134 (342)
||.. +-+.+.++...+ ....+.+.++. ++++. +-.+-+.|..+++++.+..... +
T Consensus 82 yd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~ 161 (305)
T PF07433_consen 82 YDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLH 161 (305)
T ss_pred EECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCcccc
Confidence 9998 556666765433 34455566665 44443 1234455666777776654422 3
Q ss_pred CceEEEEeeCCCccEEEEeCCC---C--ccEEEEEEccCCceeEEEe-------cccCCeeEEEECCCCCEEEEEeCCCc
Q 019349 135 LKGLCAFSPSLNACFLAVPAST---T--KGSVLVYNVMELHSHCEID-------AHQAPLAAIVLSSNGMYIATASEQGT 202 (342)
Q Consensus 135 ~~~~~~~~~~~~~~~l~~~~~~---~--~g~i~iwd~~~~~~~~~~~-------~h~~~v~~i~~s~dg~~lat~s~dg~ 202 (342)
...+--++.++++..++..-.. . ---|-+++. ++.+..+. .-.+-+-+|+++++|.+++..|-.|.
T Consensus 162 ~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg 239 (305)
T PF07433_consen 162 QLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGG 239 (305)
T ss_pred ccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCC
Confidence 2334444444444333322100 0 011222221 22122221 22356889999999999999998888
Q ss_pred EEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCc
Q 019349 203 IIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGS 250 (342)
Q Consensus 203 ~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~ 250 (342)
.+.+||..+|+.+..... ..+..++-.+++ ++++.+. |.
T Consensus 240 ~~~~~d~~tg~~~~~~~l----~D~cGva~~~~~----f~~ssG~-G~ 278 (305)
T PF07433_consen 240 RVAVWDAATGRLLGSVPL----PDACGVAPTDDG----FLVSSGQ-GQ 278 (305)
T ss_pred EEEEEECCCCCEeecccc----CceeeeeecCCc----eEEeCCC-cc
Confidence 889999999998766532 236667766554 5555444 44
No 306
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.26 E-value=1.2e-05 Score=71.57 Aligned_cols=185 Identities=10% Similarity=0.101 Sum_probs=126.3
Q ss_pred CCCeEEEEECCCCcEEEEEe----cCCceEEEEEcCCeEEEEE----CCeEEEEECCCCceeeEEeCCCCCceEEEEeeC
Q 019349 73 SPRRLCLFNTTTGTALRELN----FLTSILAVRLNKKRLVIVL----REKTYIYDANTLAILDTIDTVPNLKGLCAFSPS 144 (342)
Q Consensus 73 ~d~~i~iwd~~~~~~~~~~~----~~~~v~~i~~~~~~~~~~~----d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (342)
-|+.++.|.-..-.-+.-+. +...|.+++.+-++...++ |..+++||+++..++.-++...-|..+..+...
T Consensus 28 lDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv~sk 107 (558)
T KOG0882|consen 28 LDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWVTSK 107 (558)
T ss_pred cchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCCCceEEecCC
Confidence 38899999754322222222 2336677777777766666 679999999887666555554455555555444
Q ss_pred CCc-cEEEEeCCCCccEEEEEEccCCc-ee-EEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCC------CeeE
Q 019349 145 LNA-CFLAVPASTTKGSVLVYNVMELH-SH-CEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSE------ATKS 215 (342)
Q Consensus 145 ~~~-~~l~~~~~~~~g~i~iwd~~~~~-~~-~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~------~~~~ 215 (342)
++. ..+|.... .+|.|.++|-.... +. ..-+-|.+||.++.+++-+..+++....|. |.-|.... .+..
T Consensus 108 Gd~~s~IAVs~~-~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gm-VEyWs~e~~~qfPr~~l~ 185 (558)
T KOG0882|consen 108 GDKISLIAVSLF-KSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGM-VEYWSAEGPFQFPRTNLN 185 (558)
T ss_pred CCeeeeEEeecc-cCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccce-eEeecCCCcccCcccccc
Confidence 433 35555555 68999999975443 33 333569999999999999999999888885 68998862 1111
Q ss_pred EEeccC-------cCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCC
Q 019349 216 YSFRRG-------TYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQ 262 (342)
Q Consensus 216 ~~~~~~-------~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~ 262 (342)
.+++.. .......++.|+|++. .+++-+.|..|++++.++++..
T Consensus 186 ~~~K~eTdLy~f~K~Kt~pts~Efsp~g~---qistl~~DrkVR~F~~KtGklv 236 (558)
T KOG0882|consen 186 FELKHETDLYGFPKAKTEPTSFEFSPDGA---QISTLNPDRKVRGFVFKTGKLV 236 (558)
T ss_pred ccccccchhhcccccccCccceEEccccC---cccccCcccEEEEEEeccchhh
Confidence 111100 0123478899999999 9999999999999999987643
No 307
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.25 E-value=1.6e-05 Score=69.60 Aligned_cols=80 Identities=14% Similarity=0.128 Sum_probs=64.1
Q ss_pred ceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCceeEEE-ecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCee
Q 019349 136 KGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEI-DAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATK 214 (342)
Q Consensus 136 ~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~-~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~ 214 (342)
.-+..++.+||..+++++. .|+.|+|-.....-.+..+ -+|+.-|..|++-++ ..|++||.|++ +|+||+.+|+.
T Consensus 152 Sml~dVavS~D~~~IitaD--RDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~t-lr~Wd~~sgk~ 227 (390)
T KOG3914|consen 152 SMLLDVAVSPDDQFIITAD--RDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKT-LRLWDITSGKL 227 (390)
T ss_pred hhhheeeecCCCCEEEEec--CCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCc-EEEEecccCCc
Confidence 3466777788889999998 5899999776655555444 479999999999764 66999999998 59999999998
Q ss_pred EEEec
Q 019349 215 SYSFR 219 (342)
Q Consensus 215 ~~~~~ 219 (342)
+.++.
T Consensus 228 L~t~d 232 (390)
T KOG3914|consen 228 LDTCD 232 (390)
T ss_pred ccccc
Confidence 87664
No 308
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.24 E-value=0.0012 Score=59.23 Aligned_cols=173 Identities=13% Similarity=0.161 Sum_probs=104.3
Q ss_pred CeEEEEECCCCcEEEEEecCC--ceEEE---EEcC-----C-eEEEEE----------C-CeEEEEECCCC----ceeeE
Q 019349 75 RRLCLFNTTTGTALRELNFLT--SILAV---RLNK-----K-RLVIVL----------R-EKTYIYDANTL----AILDT 128 (342)
Q Consensus 75 ~~i~iwd~~~~~~~~~~~~~~--~v~~i---~~~~-----~-~~~~~~----------d-~~i~i~d~~~~----~~~~~ 128 (342)
..|++.|..+.+.+.++.++. .+.++ .+.. . .+++++ . |.|.+|++... ..+..
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 368899998888888777644 44444 3442 3 344443 1 78999999873 22222
Q ss_pred EeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCceeEEEecccC--CeeEEEECCCCCEEEEEeCCCcEEEE
Q 019349 129 IDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQA--PLAAIVLSSNGMYIATASEQGTIIRV 206 (342)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~--~v~~i~~s~dg~~lat~s~dg~~irl 206 (342)
+....-+..+.+++.-. +.++++.| +.|.+|++...+.+.....+.. .+.++.. .+++++.|.....+ .+
T Consensus 82 i~~~~~~g~V~ai~~~~-~~lv~~~g----~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~--~~~~I~vgD~~~sv-~~ 153 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSFN-GRLVVAVG----NKLYVYDLDNSKTLLKKAFYDSPFYITSLSV--FKNYILVGDAMKSV-SL 153 (321)
T ss_dssp EEEEEESS-EEEEEEET-TEEEEEET----TEEEEEEEETTSSEEEEEEE-BSSSEEEEEE--ETTEEEEEESSSSE-EE
T ss_pred EEEEeecCcceEhhhhC-CEEEEeec----CEEEEEEccCcccchhhheecceEEEEEEec--cccEEEEEEcccCE-EE
Confidence 21112234566776663 34555444 6899999988773323222333 4555544 46699998876664 46
Q ss_pred EEcC-CCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCC
Q 019349 207 FLVS-EATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGF 258 (342)
Q Consensus 207 wd~~-~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~ 258 (342)
+... ....+..+.+...+..++++.|-+|+. .++++..+|.+.++....
T Consensus 154 ~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~---~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 154 LRYDEENNKLILVARDYQPRWVTAAEFLVDED---TIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp EEEETTTE-EEEEEEESS-BEEEEEEEE-SSS---EEEEEETTSEEEEEEE-S
T ss_pred EEEEccCCEEEEEEecCCCccEEEEEEecCCc---EEEEEcCCCeEEEEEECC
Confidence 6443 344444554433455688999987776 899999999999999864
No 309
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.23 E-value=0.0025 Score=54.65 Aligned_cols=184 Identities=16% Similarity=0.124 Sum_probs=113.4
Q ss_pred CCeEEEEcCCCCCCCCCCeEEEEECCCCcEEEEEecCCceEEEEEc-C-CeEEEEECCeEEEEECCCCceeeEEeC--CC
Q 019349 58 SSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRLN-K-KRLVIVLREKTYIYDANTLAILDTIDT--VP 133 (342)
Q Consensus 58 ~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~i~~~-~-~~~~~~~d~~i~i~d~~~~~~~~~~~~--~~ 133 (342)
.+.+.++.. ..+.|..||..+++. ..+..+. ..++.+. + ..++++..+.+.++|+.+++....... ..
T Consensus 11 ~g~l~~~D~------~~~~i~~~~~~~~~~-~~~~~~~-~~G~~~~~~~g~l~v~~~~~~~~~d~~~g~~~~~~~~~~~~ 82 (246)
T PF08450_consen 11 DGRLYWVDI------PGGRIYRVDPDTGEV-EVIDLPG-PNGMAFDRPDGRLYVADSGGIAVVDPDTGKVTVLADLPDGG 82 (246)
T ss_dssp TTEEEEEET------TTTEEEEEETTTTEE-EEEESSS-EEEEEEECTTSEEEEEETTCEEEEETTTTEEEEEEEEETTC
T ss_pred CCEEEEEEc------CCCEEEEEECCCCeE-EEEecCC-CceEEEEccCCEEEEEEcCceEEEecCCCcEEEEeeccCCC
Confidence 445555544 468899999887654 3355555 6666665 4 456666677888889988855433332 22
Q ss_pred -CCceEEEEeeCCCccEEEEeCCCC----c--cEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEE-eCCCcEEE
Q 019349 134 -NLKGLCAFSPSLNACFLAVPASTT----K--GSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATA-SEQGTIIR 205 (342)
Q Consensus 134 -~~~~~~~~~~~~~~~~l~~~~~~~----~--g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~-s~dg~~ir 205 (342)
.......+..++++.+.++..... . |.|..++.. ++... +...-...+.|+|+||++.|..+ +..++ |.
T Consensus 83 ~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~-~~~~~~~pNGi~~s~dg~~lyv~ds~~~~-i~ 159 (246)
T PF08450_consen 83 VPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTV-VADGLGFPNGIAFSPDGKTLYVADSFNGR-IW 159 (246)
T ss_dssp SCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEE-EEEEESSEEEEEEETTSSEEEEEETTTTE-EE
T ss_pred cccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEE-EecCcccccceEECCcchheeecccccce-eE
Confidence 334555677778887666543111 1 678888877 44333 33334567899999999987655 44554 56
Q ss_pred EEEcCC-Ce------eEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecC
Q 019349 206 VFLVSE-AT------KSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPG 257 (342)
Q Consensus 206 lwd~~~-~~------~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~ 257 (342)
.+++.. +. .+..+.. .....-.|++..+|. +.++....+.|.+++.+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~--~~g~pDG~~vD~~G~---l~va~~~~~~I~~~~p~ 213 (246)
T PF08450_consen 160 RFDLDADGGELSNRRVFIDFPG--GPGYPDGLAVDSDGN---LWVADWGGGRIVVFDPD 213 (246)
T ss_dssp EEEEETTTCCEEEEEEEEE-SS--SSCEEEEEEEBTTS----EEEEEETTTEEEEEETT
T ss_pred EEeccccccceeeeeeEEEcCC--CCcCCCcceEcCCCC---EEEEEcCCCEEEEECCC
Confidence 777753 22 1222221 122477899999998 77777788999999966
No 310
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.20 E-value=0.00093 Score=62.04 Aligned_cols=219 Identities=11% Similarity=0.094 Sum_probs=116.7
Q ss_pred CCCeEEEEEcCCCCEEEEEcCCcEEEEeCCCCcEEEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCc
Q 019349 7 SYPVFFVSFNQDNSGFALSTKDGFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGT 86 (342)
Q Consensus 7 ~~~V~~l~fs~d~~~la~g~~~g~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~ 86 (342)
+.....+++||+|+.+++++++...||.....+-..... +.. ..|.. .+.+++... .++|+|+.--+.+
T Consensus 32 ~~~p~~ls~npngr~v~V~g~geY~iyt~~~~r~k~~G~--g~~-~vw~~-~n~yAv~~~-------~~~I~I~kn~~~~ 100 (443)
T PF04053_consen 32 EIYPQSLSHNPNGRFVLVCGDGEYEIYTALAWRNKAFGS--GLS-FVWSS-RNRYAVLES-------SSTIKIYKNFKNE 100 (443)
T ss_dssp SS--SEEEE-TTSSEEEEEETTEEEEEETTTTEEEEEEE---SE-EEE-T-SSEEEEE-T-------TS-EEEEETTEE-
T ss_pred CcCCeeEEECCCCCEEEEEcCCEEEEEEccCCcccccCc--eeE-EEEec-CccEEEEEC-------CCeEEEEEcCccc
Confidence 345679999999999999888888999865554333221 222 23333 455666643 5788987433333
Q ss_pred EEEEEecCCceEEEEEcCCeEEEEECCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEc
Q 019349 87 ALRELNFLTSILAVRLNKKRLVIVLREKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNV 166 (342)
Q Consensus 87 ~~~~~~~~~~v~~i~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~ 166 (342)
....++.+..+..|.. +..+.+..++.|.+||+++++.++.++.. .+..+.+++++.++|..+ +..+.|++.
T Consensus 101 ~~k~i~~~~~~~~If~-G~LL~~~~~~~i~~yDw~~~~~i~~i~v~----~vk~V~Ws~~g~~val~t---~~~i~il~~ 172 (443)
T PF04053_consen 101 VVKSIKLPFSVEKIFG-GNLLGVKSSDFICFYDWETGKLIRRIDVS----AVKYVIWSDDGELVALVT---KDSIYILKY 172 (443)
T ss_dssp TT-----SS-EEEEE--SSSEEEEETTEEEEE-TTT--EEEEESS-----E-EEEEE-TTSSEEEEE----S-SEEEEEE
T ss_pred cceEEcCCcccceEEc-CcEEEEECCCCEEEEEhhHcceeeEEecC----CCcEEEEECCCCEEEEEe---CCeEEEEEe
Confidence 3345555555666655 55666666778999999999999998643 245667788888999887 345777664
Q ss_pred cCC-----------ceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCee--EEEeccCcCceeEEEEEEe
Q 019349 167 MEL-----------HSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATK--SYSFRRGTYPSTIFSLSFG 233 (342)
Q Consensus 167 ~~~-----------~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~--~~~~~~~~~~~~v~~l~fs 233 (342)
... ..+..+..-...|.+.+|..| -++.|-. . + ++. +..|+. +..+ ..+++=+...
T Consensus 173 ~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d-~fiYtT~-~-~-lkY--l~~Ge~~~i~~l-----d~~~yllgy~ 241 (443)
T PF04053_consen 173 NLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED-CFIYTTS-N-H-LKY--LVNGETGIIAHL-----DKPLYLLGYL 241 (443)
T ss_dssp -HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT-EEEEE-T-T-E-EEE--EETTEEEEEEE------SS--EEEEEE
T ss_pred cchhcccccccCchhceEEEEEecceeEEEEEEcC-EEEEEcC-C-e-EEE--EEcCCcceEEEc-----CCceEEEEEE
Confidence 322 023333332467888888766 4444433 2 4 343 444442 2333 2246667777
Q ss_pred cCCCcccEEEEEeCCCcEEEEecCC
Q 019349 234 QSMQFQDILVATSSSGSLHVFSPGF 258 (342)
Q Consensus 234 ~d~~~~~~l~~~s~dg~i~vwd~~~ 258 (342)
|... .+.....|+.|..+.+..
T Consensus 242 ~~~~---~ly~~Dr~~~v~~~~ld~ 263 (443)
T PF04053_consen 242 PKEN---RLYLIDRDGNVISYELDL 263 (443)
T ss_dssp TTTT---EEEEE-TT--EEEEE--H
T ss_pred ccCC---EEEEEECCCCEEEEEECH
Confidence 7665 788888888888887754
No 311
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.19 E-value=0.002 Score=57.69 Aligned_cols=174 Identities=16% Similarity=0.141 Sum_probs=103.0
Q ss_pred CeEEEEECCCC-------cEEEEEecCCceEEEEEcCCeEEEEECCeEEEEECCCCc-eeeEEeCCCCCceEEEEeeCCC
Q 019349 75 RRLCLFNTTTG-------TALRELNFLTSILAVRLNKKRLVIVLREKTYIYDANTLA-ILDTIDTVPNLKGLCAFSPSLN 146 (342)
Q Consensus 75 ~~i~iwd~~~~-------~~~~~~~~~~~v~~i~~~~~~~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 146 (342)
+.|.++++.+. +.+.+...+++|.+++...+.++++..+++++|++...+ +...-.. ..+..+.++....+
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~~~~lv~~~g~~l~v~~l~~~~~l~~~~~~-~~~~~i~sl~~~~~ 140 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSFNGRLVVAVGNKLYVYDLDNSKTLLKKAFY-DSPFYITSLSVFKN 140 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEETTEEEEEETTEEEEEEEETTSSEEEEEEE--BSSSEEEEEEETT
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhhCCEEEEeecCEEEEEEccCcccchhhhee-cceEEEEEEecccc
Confidence 88999999884 233455678899999988888888889999999998877 4433222 22335566665544
Q ss_pred ccEEEEeCCCCccEEEEEEccC-CceeEEEe--cccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCC-------Ce-eE
Q 019349 147 ACFLAVPASTTKGSVLVYNVME-LHSHCEID--AHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSE-------AT-KS 215 (342)
Q Consensus 147 ~~~l~~~~~~~~g~i~iwd~~~-~~~~~~~~--~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~-------~~-~~ 215 (342)
+++++.. ...|.++.... ...+..+. .....++++.|-+|++.++.+..+|.+ .++.... +. .+
T Consensus 141 --~I~vgD~--~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl-~~l~~~~~~~~~~~~~~~L 215 (321)
T PF03178_consen 141 --YILVGDA--MKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNL-FVLRYNPEIPNSRDGDPKL 215 (321)
T ss_dssp --EEEEEES--SSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEE-EEEEE-SS-SSTTTTTTBE
T ss_pred --EEEEEEc--ccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeE-EEEEECCCCcccccccccc
Confidence 7776663 45577664433 22233332 234568888888777799999999985 5777652 22 22
Q ss_pred EEeccCcCceeEEEE---EEecC--CCc---ccEEEEEeCCCcEEEE
Q 019349 216 YSFRRGTYPSTIFSL---SFGQS--MQF---QDILVATSSSGSLHVF 254 (342)
Q Consensus 216 ~~~~~~~~~~~v~~l---~fs~d--~~~---~~~l~~~s~dg~i~vw 254 (342)
.....-+-...|+++ ++.|. +.. .+.++.++.+|.|.+.
T Consensus 216 ~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 216 ERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp EEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred eeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence 221111122346666 55552 220 0148888999998844
No 312
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.19 E-value=0.0016 Score=56.66 Aligned_cols=184 Identities=12% Similarity=0.179 Sum_probs=115.3
Q ss_pred EEEEcCCCCEEEEEcC-----Cc-EEEEeCC-CCcEEEEEeeCCEEE--EEEcCCCCeEEEEcCCCCCC-----------
Q 019349 12 FVSFNQDNSGFALSTK-----DG-FKIFDSS-TGRLCYERAVGAFSI--VEMLYSSSLLAIVGAGEQPS----------- 71 (342)
Q Consensus 12 ~l~fs~d~~~la~g~~-----~g-~~v~d~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~----------- 71 (342)
.-.||+||++|.+.-. .| +-|||.. +.+.+-+...+++.- +.+.+++..++++-+|-.+-
T Consensus 55 Hg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~ 134 (305)
T PF07433_consen 55 HGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLD 134 (305)
T ss_pred CEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChh
Confidence 4579999999987532 34 5899998 445554444444431 34566777787777764432
Q ss_pred CCCCeEEEEECCCCcEEEEEecC-----CceEEEEEcCCeEEEEE---CC-------eEEEEECCCCceeeEEeCCCC--
Q 019349 72 LSPRRLCLFNTTTGTALRELNFL-----TSILAVRLNKKRLVIVL---RE-------KTYIYDANTLAILDTIDTVPN-- 134 (342)
Q Consensus 72 ~~d~~i~iwd~~~~~~~~~~~~~-----~~v~~i~~~~~~~~~~~---d~-------~i~i~d~~~~~~~~~~~~~~~-- 134 (342)
..+-.+.+.|..+|+.+....++ .+|+-+++..+..++.. .+ -+.+++- ++.+..+..+..
T Consensus 135 tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~ 212 (305)
T PF07433_consen 135 TMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQW 212 (305)
T ss_pred hcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHH
Confidence 12344777888999988886653 27899999988877665 11 1333333 332333332211
Q ss_pred ---CceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCc
Q 019349 135 ---LKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGT 202 (342)
Q Consensus 135 ---~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~ 202 (342)
...+-+++.++++..+++++- ..|.+.+||..+++.+....- ..+..++-.+++ +++|.+. |.
T Consensus 213 ~~l~~Y~gSIa~~~~g~~ia~tsP-rGg~~~~~d~~tg~~~~~~~l--~D~cGva~~~~~-f~~ssG~-G~ 278 (305)
T PF07433_consen 213 RRLNGYIGSIAADRDGRLIAVTSP-RGGRVAVWDAATGRLLGSVPL--PDACGVAPTDDG-FLVSSGQ-GQ 278 (305)
T ss_pred HhhCCceEEEEEeCCCCEEEEECC-CCCEEEEEECCCCCEeecccc--CceeeeeecCCc-eEEeCCC-cc
Confidence 123456666677777766654 679999999999987765443 345667776766 6666553 54
No 313
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.18 E-value=6.3e-05 Score=72.54 Aligned_cols=175 Identities=17% Similarity=0.169 Sum_probs=119.3
Q ss_pred EEEcCCcEEEEeCCCCcEEEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEEEEEecC-CceEEEE
Q 019349 23 ALSTKDGFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFL-TSILAVR 101 (342)
Q Consensus 23 a~g~~~g~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~~~~~-~~v~~i~ 101 (342)
..|-.+-+..+|+.+.+.....+...-.+.-|. ..+.+.++|. ..|+|.+=|..+.+.+.++..+ +.|.++.
T Consensus 152 ~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR-~Nnr~lf~G~------t~G~V~LrD~~s~~~iht~~aHs~siSDfD 224 (1118)
T KOG1275|consen 152 MGGLQEKLIHIDLNTEKETRTTNVSASGVTIMR-YNNRNLFCGD------TRGTVFLRDPNSFETIHTFDAHSGSISDFD 224 (1118)
T ss_pred ecchhhheeeeecccceeeeeeeccCCceEEEE-ecCcEEEeec------ccceEEeecCCcCceeeeeeccccceeeee
Confidence 334455577888888776655544332223333 3445555554 4899999999999999998754 5889999
Q ss_pred EcCCeEEEEE----------CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEc---cC
Q 019349 102 LNKKRLVIVL----------REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNV---ME 168 (342)
Q Consensus 102 ~~~~~~~~~~----------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~---~~ 168 (342)
+.++.++.++ |.-|++||++..+.+.-+..+..+ ...-+.|+-.. .+|+++ ..|+..+-|. .+
T Consensus 225 v~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t-~~~V~S--~sGq~q~vd~~~lsN 300 (1118)
T KOG1275|consen 225 VQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTT-RLAVTS--QSGQFQFVDTATLSN 300 (1118)
T ss_pred ccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccc-eEEEEe--cccceeeccccccCC
Confidence 9988887765 567999999988877666655554 23334443322 344444 4688999983 33
Q ss_pred C-ceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEc
Q 019349 169 L-HSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLV 209 (342)
Q Consensus 169 ~-~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~ 209 (342)
. ..+..+....+.+..+++|++|+.||.|..+|. |.+|.-
T Consensus 301 P~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~-v~~wa~ 341 (1118)
T KOG1275|consen 301 PPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGH-VNLWAD 341 (1118)
T ss_pred CccceeEEccCCCcceeEEecCCCceEEEecccCc-EeeecC
Confidence 2 123333344556999999999999999999997 589973
No 314
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.16 E-value=0.0046 Score=58.73 Aligned_cols=229 Identities=13% Similarity=0.099 Sum_probs=124.4
Q ss_pred CEEEEEcCCc-EEEEeCCCCcEEEEEeeCCE-----EEE-EEcCCCCeEEEEcCCCCC--CCCCCeEEEEECCCCcEEEE
Q 019349 20 SGFALSTKDG-FKIFDSSTGRLCYERAVGAF-----SIV-EMLYSSSLLAIVGAGEQP--SLSPRRLCLFNTTTGTALRE 90 (342)
Q Consensus 20 ~~la~g~~~g-~~v~d~~~~~~~~~~~~~~~-----~~~-~~~~~~~~~~~~~~g~~~--~~~d~~i~iwd~~~~~~~~~ 90 (342)
..+.+++.++ +.-+|.++|+++........ .+. ........+.+.+.+... .-.++.+...|..+|+.+..
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~ 190 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWR 190 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeE
Confidence 4566676666 58889999988766543221 000 000111333332211000 00257899999999999988
Q ss_pred EecCCc---------------------eE-EEEEc--CCeEEEEE-CC------------------eEEEEECCCCceee
Q 019349 91 LNFLTS---------------------IL-AVRLN--KKRLVIVL-RE------------------KTYIYDANTLAILD 127 (342)
Q Consensus 91 ~~~~~~---------------------v~-~i~~~--~~~~~~~~-d~------------------~i~i~d~~~~~~~~ 127 (342)
++.... +. ...+. .+.+++.+ ++ .+.-+|..+++.+.
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W 270 (488)
T cd00216 191 FYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKW 270 (488)
T ss_pred eeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEE
Confidence 765211 00 12222 23444443 32 68899999999988
Q ss_pred EEeCCCCCc---------eEEEEe-eCCCcc-EEEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEE
Q 019349 128 TIDTVPNLK---------GLCAFS-PSLNAC-FLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIAT 196 (342)
Q Consensus 128 ~~~~~~~~~---------~~~~~~-~~~~~~-~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat 196 (342)
.++...+.. .+..+. .++... .++.+. .+|.+...|.++++.+-..+.- ...++.+| ..+..
T Consensus 271 ~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~--~~G~l~ald~~tG~~~W~~~~~---~~~~~~~~--~~vyv 343 (488)
T cd00216 271 FYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAP--KNGFFYVLDRTTGKLISARPEV---EQPMAYDP--GLVYL 343 (488)
T ss_pred EeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEEC--CCceEEEEECCCCcEeeEeEee---ccccccCC--ceEEE
Confidence 875432210 011110 112212 344444 5899999999999987554321 11233444 22222
Q ss_pred E------------------eCCCcEEEEEEcCCCeeEEEeccCcCc------eeE--EEEEEecCCCcccEEEEEeCCCc
Q 019349 197 A------------------SEQGTIIRVFLVSEATKSYSFRRGTYP------STI--FSLSFGQSMQFQDILVATSSSGS 250 (342)
Q Consensus 197 ~------------------s~dg~~irlwd~~~~~~~~~~~~~~~~------~~v--~~l~fs~d~~~~~~l~~~s~dg~ 250 (342)
+ ..+|.+ .-.|+.+|+.+.+....... .+. ..++. .+. +|.+++.||.
T Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~G~l-~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~--~g~---~v~~g~~dG~ 417 (488)
T cd00216 344 GAFHIPLGLPPQKKKRCKKPGKGGL-AALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT--AGN---LVFAGAADGY 417 (488)
T ss_pred ccccccccCcccccCCCCCCCceEE-EEEeCCCCcEeeEeeCCccccccccCCcccCcceEe--cCC---eEEEECCCCe
Confidence 2 124554 47788888877766433110 011 11222 344 7888999999
Q ss_pred EEEEecCCCCC
Q 019349 251 LHVFSPGFAIN 261 (342)
Q Consensus 251 i~vwd~~~~~~ 261 (342)
|+.+|.++++.
T Consensus 418 l~ald~~tG~~ 428 (488)
T cd00216 418 FRAFDATTGKE 428 (488)
T ss_pred EEEEECCCCce
Confidence 99999988875
No 315
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.15 E-value=0.00028 Score=67.15 Aligned_cols=237 Identities=14% Similarity=0.062 Sum_probs=144.3
Q ss_pred CCCeEEEEEcCCCCEEEEEcCCcEEEEeCCCCcEEEE--EeeCCEEEEEEcCCC----------CeEEEEcCCCCCCCCC
Q 019349 7 SYPVFFVSFNQDNSGFALSTKDGFKIFDSSTGRLCYE--RAVGAFSIVEMLYSS----------SLLAIVGAGEQPSLSP 74 (342)
Q Consensus 7 ~~~V~~l~fs~d~~~la~g~~~g~~v~d~~~~~~~~~--~~~~~~~~~~~~~~~----------~~~~~~~~g~~~~~~d 74 (342)
...-.++.|+|.| ++|-|+...+.|-|..+-+.+-. .+...+..+.|.+.. ..+.++++. -.
T Consensus 15 ~sN~~A~Dw~~~G-LiAygshslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD-----~~ 88 (1062)
T KOG1912|consen 15 RSNRNAADWSPSG-LIAYGSHSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASAD-----IS 88 (1062)
T ss_pred cccccccccCccc-eEEEecCceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEecc-----cc
Confidence 3446688999887 47888877788888777665533 344566667775432 223344442 46
Q ss_pred CeEEEEECCCCcEEEEEecCC-ceEEEEEcC------CeEEEEE-CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCC-
Q 019349 75 RRLCLFNTTTGTALRELNFLT-SILAVRLNK------KRLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSL- 145 (342)
Q Consensus 75 ~~i~iwd~~~~~~~~~~~~~~-~v~~i~~~~------~~~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~- 145 (342)
|.|.+||...+..+..++++. ++.+++|-+ +.+++.. ...+.+||..+|+.+.......+ .+.++..+|
T Consensus 89 GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~--iLs~f~~DPf 166 (1062)
T KOG1912|consen 89 GRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHE--ILSCFRVDPF 166 (1062)
T ss_pred CcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCc--ceeeeeeCCC
Confidence 899999999988888887654 788888732 3333333 67999999999988877654433 455566655
Q ss_pred CccEEEEeCCCCccEEEEEEccC-------CceeEEEecccC----------------C---------eeEEEECCCCC-
Q 019349 146 NACFLAVPASTTKGSVLVYNVME-------LHSHCEIDAHQA----------------P---------LAAIVLSSNGM- 192 (342)
Q Consensus 146 ~~~~l~~~~~~~~g~i~iwd~~~-------~~~~~~~~~h~~----------------~---------v~~i~~s~dg~- 192 (342)
+...+...+ ..|.+.+-+.-. ++.++.-..|.+ . .-..+|+|.=+
T Consensus 167 d~rh~~~l~--s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn 244 (1062)
T KOG1912|consen 167 DSRHFCVLG--SKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRN 244 (1062)
T ss_pred CcceEEEEc--cCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhc
Confidence 334455555 357777766421 122211112222 0 01245677432
Q ss_pred EEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCC
Q 019349 193 YIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGF 258 (342)
Q Consensus 193 ~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~ 258 (342)
.+...-.. .+ .++|++-...+....-.... +.-+.+-|+.+ ++.|.+.-.||.+.+|--+.
T Consensus 245 ~lfi~~pr-el-lv~dle~~~~l~vvpier~~--akfv~vlP~~~-rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 245 ILFITFPR-EL-LVFDLEYECCLAVVPIERGG--AKFVDVLPDPR-RDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred eEEEEecc-ce-EEEcchhhceeEEEEeccCC--cceeEeccCCC-cceEEEEecCCeEEEEEeec
Confidence 22222333 34 59999877776665433222 33355566654 35899999999999996543
No 316
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.15 E-value=3.8e-05 Score=72.77 Aligned_cols=124 Identities=18% Similarity=0.175 Sum_probs=93.4
Q ss_pred EeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCC------------CEEEE
Q 019349 129 IDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNG------------MYIAT 196 (342)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg------------~~lat 196 (342)
+....++....+..+++.| ++|+++ ...|.+-|.++.+.+++++-|...|+.|.|.|.. -.||+
T Consensus 9 lpG~l~~sN~~A~Dw~~~G-LiAygs---hslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAs 84 (1062)
T KOG1912|consen 9 LPGPLSRSNRNAADWSPSG-LIAYGS---HSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIAS 84 (1062)
T ss_pred CCCCCCcccccccccCccc-eEEEec---CceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEe
Confidence 3344444455566666654 778776 3679999999999999999999999999997631 24677
Q ss_pred EeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEec---CCCcccEEEEEeCCCcEEEEecCCCCC
Q 019349 197 ASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQ---SMQFQDILVATSSSGSLHVFSPGFAIN 261 (342)
Q Consensus 197 ~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~---d~~~~~~l~~~s~dg~i~vwd~~~~~~ 261 (342)
+...|++| +||...+..+..+..+ ..++..++|-+ +.+ ++|++-....+|-+|+..++..
T Consensus 85 aD~~GrIi-l~d~~~~s~~~~l~~~--~~~~qdl~W~~~rd~Sr--d~LlaIh~ss~lvLwntdtG~k 147 (1062)
T KOG1912|consen 85 ADISGRII-LVDFVLASVINWLSHS--NDSVQDLCWVPARDDSR--DVLLAIHGSSTLVLWNTDTGEK 147 (1062)
T ss_pred ccccCcEE-EEEehhhhhhhhhcCC--CcchhheeeeeccCcch--heeEEecCCcEEEEEEccCCce
Confidence 77779976 9999998887777533 44577888754 443 4888889999999999888765
No 317
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=98.14 E-value=0.0028 Score=55.33 Aligned_cols=215 Identities=16% Similarity=0.181 Sum_probs=124.7
Q ss_pred CCCCEEEEEcCCcEEEEeC-CCCcEEEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEEE------
Q 019349 17 QDNSGFALSTKDGFKIFDS-STGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALR------ 89 (342)
Q Consensus 17 ~d~~~la~g~~~g~~v~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~------ 89 (342)
..++.|++|+++|+.+|+. .............+.-+.....-+.+++.+ |+++.++++..-....
T Consensus 5 ~~~~~L~vGt~~Gl~~~~~~~~~~~~~i~~~~~I~ql~vl~~~~~llvLs--------d~~l~~~~L~~l~~~~~~~~~~ 76 (275)
T PF00780_consen 5 SWGDRLLVGTEDGLYVYDLSDPSKPTRILKLSSITQLSVLPELNLLLVLS--------DGQLYVYDLDSLEPVSTSAPLA 76 (275)
T ss_pred cCCCEEEEEECCCEEEEEecCCccceeEeecceEEEEEEecccCEEEEEc--------CCccEEEEchhhcccccccccc
Confidence 4677899999999999998 333333333334477777777778887775 5799999986544333
Q ss_pred ---------EEecCCceEEEE----EcC-CeEEEEECCeEEEEECCCC-----ceeeEEeCCCCCceEEEEeeCCCccEE
Q 019349 90 ---------ELNFLTSILAVR----LNK-KRLVIVLREKTYIYDANTL-----AILDTIDTVPNLKGLCAFSPSLNACFL 150 (342)
Q Consensus 90 ---------~~~~~~~v~~i~----~~~-~~~~~~~d~~i~i~d~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l 150 (342)
.+.....+..++ ... ..++++...+|.+|..... +..+++..+..+.. +++.++ .+
T Consensus 77 ~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~---i~~~~~--~i 151 (275)
T PF00780_consen 77 FPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSS---IAFLGN--KI 151 (275)
T ss_pred ccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEE---EEEeCC--EE
Confidence 111122344444 111 2445555789999888652 46677766655433 333333 55
Q ss_pred EEeCCCCccEEEEEEccCCceeEEEec------------ccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEE--
Q 019349 151 AVPASTTKGSVLVYNVMELHSHCEIDA------------HQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSY-- 216 (342)
Q Consensus 151 ~~~~~~~~g~i~iwd~~~~~~~~~~~~------------h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~-- 216 (342)
+.+. .....+.|+.++.....+.. ...++..+.++ ++.+|+.-. + .-+ +.|. .|+...
T Consensus 152 ~v~~---~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~Ll~~~-~-~g~-fv~~-~G~~~r~~ 223 (275)
T PF00780_consen 152 CVGT---SKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-DNEFLLCYD-N-IGV-FVNK-NGEPSRKS 223 (275)
T ss_pred EEEe---CCceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC-CceEEEEec-c-eEE-EEcC-CCCcCccc
Confidence 5553 24588889987665433211 12345555554 456676543 2 222 4444 554332
Q ss_pred EeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCC
Q 019349 217 SFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAIN 261 (342)
Q Consensus 217 ~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~ 261 (342)
.+.. .....++++. .. +|++-+. +.|.||++.+++.
T Consensus 224 ~i~W---~~~p~~~~~~--~p---yli~~~~-~~iEV~~~~~~~l 259 (275)
T PF00780_consen 224 TIQW---SSAPQSVAYS--SP---YLIAFSS-NSIEVRSLETGEL 259 (275)
T ss_pred EEEc---CCchhEEEEE--CC---EEEEECC-CEEEEEECcCCcE
Confidence 2222 2235566774 34 6776666 4599999998754
No 318
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.12 E-value=3.3e-05 Score=64.12 Aligned_cols=144 Identities=12% Similarity=0.113 Sum_probs=82.4
Q ss_pred EEEEeCCCCccEEEEEEccCCce-eEEEecccCCeeEEEECCCCCEEEEE------eCCCcEEEEEEcCCCeeEEEeccC
Q 019349 149 FLAVPASTTKGSVLVYNVMELHS-HCEIDAHQAPLAAIVLSSNGMYIATA------SEQGTIIRVFLVSEATKSYSFRRG 221 (342)
Q Consensus 149 ~l~~~~~~~~g~i~iwd~~~~~~-~~~~~~h~~~v~~i~~s~dg~~lat~------s~dg~~irlwd~~~~~~~~~~~~~ 221 (342)
.+++++ .||.+.+++.+.... ...++.-...--+.++-..+++|.++ +.|. . +.|+++..+.+..-.
T Consensus 103 ~V~~~~--~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~-~-~a~~~~p~~t~~~~~-- 176 (319)
T KOG4714|consen 103 RVCIGY--ADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDN-F-YANTLDPIKTLIPSK-- 176 (319)
T ss_pred ceEecC--CCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccc-e-eeecccccccccccc--
Confidence 566666 689999998765321 12222211112223333444544443 3343 2 466665433221111
Q ss_pred cCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCcc
Q 019349 222 TYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVK 301 (342)
Q Consensus 222 ~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (342)
.....|.+++-+|..+ +++++|++||.+-+||.+....+- + ++..+...+|..-+| |+
T Consensus 177 ~~~~~v~~l~~hp~qq--~~v~cgt~dg~~~l~d~rn~~~p~------S----~l~ahk~~i~eV~FH----------pk 234 (319)
T KOG4714|consen 177 KALDAVTALCSHPAQQ--HLVCCGTDDGIVGLWDARNVAMPV------S----LLKAHKAEIWEVHFH----------PK 234 (319)
T ss_pred cccccchhhhCCcccc--cEEEEecCCCeEEEEEcccccchH------H----HHHHhhhhhhheecc----------CC
Confidence 1112388999999876 589999999999999988764322 1 222223345544332 22
Q ss_pred -ccEEEEEEeCCcEEEEEEe
Q 019349 302 -RASVSVITYNGYFVEYIFS 320 (342)
Q Consensus 302 -~~~l~~~~~dg~v~~~~~~ 320 (342)
...|++++.||.+..|+-+
T Consensus 235 ~p~~Lft~sedGslw~wdas 254 (319)
T KOG4714|consen 235 NPEHLFTCSEDGSLWHWDAS 254 (319)
T ss_pred CchheeEecCCCcEEEEcCC
Confidence 2689999999999999765
No 319
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.12 E-value=2.6e-05 Score=73.40 Aligned_cols=199 Identities=13% Similarity=0.169 Sum_probs=126.3
Q ss_pred CCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCC-CcEEEEEec--CCceEEEEEcCC----eEEEEE-CCeEEEE
Q 019349 47 GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTT-GTALRELNF--LTSILAVRLNKK----RLVIVL-REKTYIY 118 (342)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~-~~~~~~~~~--~~~v~~i~~~~~----~~~~~~-d~~i~i~ 118 (342)
+++..+.+.+.+.-+++++. ..+.+-|+.. +.+..-+.+ +-.|-++.|++. .-++.. ..+..+|
T Consensus 25 ~~~~a~si~p~grdi~lAsr--------~gl~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiw 96 (1081)
T KOG0309|consen 25 GGFNAVSINPSGRDIVLASR--------QGLYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIW 96 (1081)
T ss_pred Ccccceeeccccchhhhhhh--------cCeEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhh
Confidence 56666677677766666653 3455666543 233222222 224566666543 223333 5577889
Q ss_pred ECCCC--ceeeEEeCCCCCceEEEEeeCCCcc-EEEEeCCCCccEEEEEEccCCc-eeEEEecccCCeeEEEECC-CCCE
Q 019349 119 DANTL--AILDTIDTVPNLKGLCAFSPSLNAC-FLAVPASTTKGSVLVYNVMELH-SHCEIDAHQAPLAAIVLSS-NGMY 193 (342)
Q Consensus 119 d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~g~i~iwd~~~~~-~~~~~~~h~~~v~~i~~s~-dg~~ 193 (342)
++... +.+ ++-.+.+..+++.+.++|+.. .+|++. .|-.+..||+++.. ++..+..-...-..|+|+. +++.
T Consensus 97 nlA~ss~~aI-ef~lhghsraitd~n~~~q~pdVlatcs--vdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~v 173 (1081)
T KOG0309|consen 97 NLAKSSSNAI-EFVLHGHSRAITDINFNPQHPDVLATCS--VDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNV 173 (1081)
T ss_pred hhhcCCccce-EEEEecCccceeccccCCCCCcceeecc--ccccceeeeccCCCcceeeeecccccCceeeecccCcch
Confidence 88532 222 334456666788887776543 566666 68999999999875 4455444344567789987 5555
Q ss_pred EEEEeCCCcEEEEEEcCCCe-eEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCC
Q 019349 194 IATASEQGTIIRVFLVSEAT-KSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQ 262 (342)
Q Consensus 194 lat~s~dg~~irlwd~~~~~-~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~ 262 (342)
||+. .|..|++||++.|. .+..+++ +...|++++|..--. ..+.+.+.|++|++||.+...+.
T Consensus 174 lass--hg~~i~vwd~r~gs~pl~s~K~--~vs~vn~~~fnr~~~--s~~~s~~~d~tvkfw~y~kSt~e 237 (1081)
T KOG0309|consen 174 LASS--HGNDIFVWDLRKGSTPLCSLKG--HVSSVNSIDFNRFKY--SEIMSSSNDGTVKFWDYSKSTTE 237 (1081)
T ss_pred hhhc--cCCceEEEeccCCCcceEEecc--cceeeehHHHhhhhh--hhhcccCCCCceeeecccccccc
Confidence 5543 35568999998764 5566654 456789999976433 16889999999999998765443
No 320
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.08 E-value=0.0042 Score=54.75 Aligned_cols=59 Identities=20% Similarity=0.313 Sum_probs=43.6
Q ss_pred cEEEEEEccCCceeEEEecccCCeeEEEECCCCC-EEEEEe-CCCcEEEEEEcCCCeeEEEec
Q 019349 159 GSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGM-YIATAS-EQGTIIRVFLVSEATKSYSFR 219 (342)
Q Consensus 159 g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~-~lat~s-~dg~~irlwd~~~~~~~~~~~ 219 (342)
-.|.++|+.+++.+..++. ..++.+|.++.|.+ +|.+.+ .++. +.+||..+|+++.++.
T Consensus 269 teVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~-l~v~D~~tGk~~~~~~ 329 (342)
T PF06433_consen 269 TEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGT-LDVYDAATGKLVRSIE 329 (342)
T ss_dssp EEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTE-EEEEETTT--EEEEE-
T ss_pred eEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCe-EEEEeCcCCcEEeehh
Confidence 3677889999999988874 34688999999876 565544 4666 4799999999988775
No 321
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.06 E-value=0.0054 Score=52.08 Aligned_cols=159 Identities=12% Similarity=0.115 Sum_probs=94.7
Q ss_pred ceEEEEEcCCeEEEEE---CCeEEEEECCCCceeeEEeCCCC-----CceEEEEeeCC---C----ccEEEEeCCCCccE
Q 019349 96 SILAVRLNKKRLVIVL---REKTYIYDANTLAILDTIDTVPN-----LKGLCAFSPSL---N----ACFLAVPASTTKGS 160 (342)
Q Consensus 96 ~v~~i~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~-----~~~~~~~~~~~---~----~~~l~~~~~~~~g~ 160 (342)
.-+.++|++|..+++. .|+|++||+... .+..+..... ...+..+.+-+ . ..+|+. . ..|.
T Consensus 45 QWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~-~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi-~--Y~G~ 120 (282)
T PF15492_consen 45 QWRKLAWSPDCTLLAYAESTGTIRVFDLMGS-ELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVI-N--YRGQ 120 (282)
T ss_pred hheEEEECCCCcEEEEEcCCCeEEEEecccc-eeEEcCcccccCCccccceeeeEeeccccccccceeEEEE-e--ccce
Confidence 4578999999766655 679999999653 3333321111 11223222211 1 123333 3 3577
Q ss_pred EEEEEccC-----CceeEEEe--c-ccCCeeEEEECCCCCEEEEEeCCC-c---------EEEEEEcCCCeeEEEe----
Q 019349 161 VLVYNVME-----LHSHCEID--A-HQAPLAAIVLSSNGMYIATASEQG-T---------IIRVFLVSEATKSYSF---- 218 (342)
Q Consensus 161 i~iwd~~~-----~~~~~~~~--~-h~~~v~~i~~s~dg~~lat~s~dg-~---------~irlwd~~~~~~~~~~---- 218 (342)
++-|-+.. .+...++. . +...|+++.++|..++|+.||... . -+--|.+-++..-+..
T Consensus 121 L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~ 200 (282)
T PF15492_consen 121 LRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSS 200 (282)
T ss_pred eeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEcccc
Confidence 77776532 22333332 2 467899999999989888876421 0 0235665444321110
Q ss_pred -----------------------ccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCC
Q 019349 219 -----------------------RRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAIN 261 (342)
Q Consensus 219 -----------------------~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~ 261 (342)
+.+.....|..|.+|||++ +||+...+|.|.+|++..-..
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~---~La~ih~sG~lsLW~iPsL~~ 263 (282)
T PF15492_consen 201 EDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGS---LLACIHFSGSLSLWEIPSLRL 263 (282)
T ss_pred CccccccccccceeeccceeeeeccccCCCceEEEEECCCCC---EEEEEEcCCeEEEEecCcchh
Confidence 0111233489999999999 999999999999999876544
No 322
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.05 E-value=0.0053 Score=51.49 Aligned_cols=103 Identities=13% Similarity=0.239 Sum_probs=64.6
Q ss_pred CCEEEEEcCCcE-EEEeCCCCcEEEEEee-CCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEEEEEecCCc
Q 019349 19 NSGFALSTKDGF-KIFDSSTGRLCYERAV-GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTS 96 (342)
Q Consensus 19 ~~~la~g~~~g~-~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 96 (342)
.+++++|+-.+. .--|..+|++..+... ..+..-.+. -+++ +++|. ..+.+.+.+.++|.....+.....
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~v-vgdf-VV~GC------y~g~lYfl~~~tGs~~w~f~~~~~ 94 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIV-VGDF-VVLGC------YSGGLYFLCVKTGSQIWNFVILET 94 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEE-ECCE-EEEEE------ccCcEEEEEecchhheeeeeehhh
Confidence 355677877774 6778999988776543 233333333 2344 34443 478899999999988877765554
Q ss_pred eEE---EEEcCCeEEEEE-CCeEEEEECCCCceeeEE
Q 019349 97 ILA---VRLNKKRLVIVL-REKTYIYDANTLAILDTI 129 (342)
Q Consensus 97 v~~---i~~~~~~~~~~~-d~~i~i~d~~~~~~~~~~ 129 (342)
|.. ++++...+...+ |+..+..|..+...+.+.
T Consensus 95 vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVyks 131 (354)
T KOG4649|consen 95 VKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKS 131 (354)
T ss_pred hccceEEcCCCceEEEecCCCcEEEecccccceEEec
Confidence 432 334444455555 778888888776666554
No 323
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.05 E-value=0.00021 Score=68.17 Aligned_cols=144 Identities=14% Similarity=0.178 Sum_probs=98.0
Q ss_pred ceEEEEEcCCeEEEEE-CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCceeEE
Q 019349 96 SILAVRLNKKRLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCE 174 (342)
Q Consensus 96 ~v~~i~~~~~~~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~ 174 (342)
.+.+++++...+++.+ .|.+++++.... . .+...+. +.+.+|.++++++ .||+|.|--+-+.+...+
T Consensus 41 ~is~~av~~~~~~~GtH~g~v~~~~~~~~-~-~~~~~~s--------~~~~~Gey~asCS--~DGkv~I~sl~~~~~~~~ 108 (846)
T KOG2066|consen 41 AISCCAVHDKFFALGTHRGAVYLTTCQGN-P-KTNFDHS--------SSILEGEYVASCS--DDGKVVIGSLFTDDEITQ 108 (846)
T ss_pred HHHHHHhhcceeeeccccceEEEEecCCc-c-ccccccc--------ccccCCceEEEec--CCCcEEEeeccCCcccee
Confidence 4566777777777777 779999987532 1 1111111 1155688999988 799999999888776655
Q ss_pred EecccCCeeEEEECCC-----CCEEEEEeCCCcEEEEEEcCC-CeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCC
Q 019349 175 IDAHQAPLAAIVLSSN-----GMYIATASEQGTIIRVFLVSE-ATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSS 248 (342)
Q Consensus 175 ~~~h~~~v~~i~~s~d-----g~~lat~s~dg~~irlwd~~~-~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~d 248 (342)
+. ...|+.+|+++|| .+++++|+..| ++ ++.-+- |.+... ..+...++|.++.|. |. ++|-++++
T Consensus 109 ~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lv-L~er~wlgnk~~v-~l~~~eG~I~~i~W~--g~---lIAWand~ 179 (846)
T KOG2066|consen 109 YD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LV-LSERNWLGNKDSV-VLSEGEGPIHSIKWR--GN---LIAWANDD 179 (846)
T ss_pred Ee-cCCcceeEEeccchhhhhhhheeecCcce-EE-EehhhhhcCccce-eeecCccceEEEEec--Cc---EEEEecCC
Confidence 54 3578999999998 57899999888 65 554321 111111 122335679999997 55 78877766
Q ss_pred CcEEEEecCCCCC
Q 019349 249 GSLHVFSPGFAIN 261 (342)
Q Consensus 249 g~i~vwd~~~~~~ 261 (342)
| |+|||+.....
T Consensus 180 G-v~vyd~~~~~~ 191 (846)
T KOG2066|consen 180 G-VKVYDTPTRQR 191 (846)
T ss_pred C-cEEEeccccce
Confidence 5 79999887654
No 324
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.04 E-value=0.0085 Score=57.12 Aligned_cols=220 Identities=14% Similarity=0.109 Sum_probs=123.5
Q ss_pred EEcCCCCEEEEEcC-Cc-EEEEeCCCCcEEEEEeeC-CEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEEEE
Q 019349 14 SFNQDNSGFALSTK-DG-FKIFDSSTGRLCYERAVG-AFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRE 90 (342)
Q Consensus 14 ~fs~d~~~la~g~~-~g-~~v~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~ 90 (342)
=++|||+.+...++ .+ +.+.|.++.++..+...+ ....+.+.+++.++++.+-... ...++..-+......+..
T Consensus 199 PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE---~G~tl~em~a~e~d~~vv 275 (635)
T PRK02888 199 PLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSE---EGVTLAEMMAAERDWVVV 275 (635)
T ss_pred ccCCCCCEeecccceeEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcc---cCcceeeeccccCceEEE
Confidence 34668876643332 22 467788877665554332 2234556666666655531000 122333333322222222
Q ss_pred EecCCceEEEEEcCCeEEEEECCeEEEEECCC-----CceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEE
Q 019349 91 LNFLTSILAVRLNKKRLVIVLREKTYIYDANT-----LAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYN 165 (342)
Q Consensus 91 ~~~~~~v~~i~~~~~~~~~~~d~~i~i~d~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd 165 (342)
+.... +..+.-..+...+ .+++|.+.|..+ .+.+..+.....+.++ ..+||+.++++++. .+++|.|+|
T Consensus 276 fni~~-iea~vkdGK~~~V-~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV---~vSPDGkylyVank-lS~tVSVID 349 (635)
T PRK02888 276 FNIAR-IEEAVKAGKFKTI-GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGV---NTSPDGKYFIANGK-LSPTVTVID 349 (635)
T ss_pred EchHH-HHHhhhCCCEEEE-CCCEEEEEECCccccCCcceEEEEECCCCccce---EECCCCCEEEEeCC-CCCcEEEEE
Confidence 21110 0111112222332 467899999988 5677778776665544 56788889988886 689999999
Q ss_pred ccCCce------------eEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCC----------CeeEEEeccCcC
Q 019349 166 VMELHS------------HCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSE----------ATKSYSFRRGTY 223 (342)
Q Consensus 166 ~~~~~~------------~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~----------~~~~~~~~~~~~ 223 (342)
+.+.+. +...+--.+| ...+|+++|+...|-..|..++ .|++.. ...+.++.-+..
T Consensus 350 v~k~k~~~~~~~~~~~~vvaevevGlGP-LHTaFDg~G~aytslf~dsqv~-kwn~~~a~~~~~g~~~~~v~~k~dV~y~ 427 (635)
T PRK02888 350 VRKLDDLFDGKIKPRDAVVAEPELGLGP-LHTAFDGRGNAYTTLFLDSQIV-KWNIEAAIRAYKGEKVDPIVQKLDVHYQ 427 (635)
T ss_pred ChhhhhhhhccCCccceEEEeeccCCCc-ceEEECCCCCEEEeEeecceeE-EEehHHHHHHhccccCCcceecccCCCc
Confidence 987653 3333332333 4578999999888888888865 799876 223333433333
Q ss_pred ceeEEE---EEEecCCCcccEEEEEeC
Q 019349 224 PSTIFS---LSFGQSMQFQDILVATSS 247 (342)
Q Consensus 224 ~~~v~~---l~fs~d~~~~~~l~~~s~ 247 (342)
++++.. =.-.|||+ +|++...
T Consensus 428 pgh~~~~~g~t~~~dgk---~l~~~nk 451 (635)
T PRK02888 428 PGHNHASMGETKEADGK---WLVSLNK 451 (635)
T ss_pred cceeeecCCCcCCCCCC---EEEEccc
Confidence 333221 12357888 7776543
No 325
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.02 E-value=0.00022 Score=65.16 Aligned_cols=144 Identities=13% Similarity=0.266 Sum_probs=93.7
Q ss_pred CCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEEEEEecCCceEEEEEcCC---------eEEEE-ECCeEEEEECCCC-c
Q 019349 56 YSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRLNKK---------RLVIV-LREKTYIYDANTL-A 124 (342)
Q Consensus 56 ~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~i~~~~~---------~~~~~-~d~~i~i~d~~~~-~ 124 (342)
.+.+.+++.++ ..+.|+-.|+++|+.+.+..+...|.-+.+.++ ..++. +++.|.-||.+-. +
T Consensus 343 ~dsnlil~~~~------~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~ 416 (644)
T KOG2395|consen 343 ADSNLILMDGG------EQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGK 416 (644)
T ss_pred cccceEeeCCC------CcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCc
Confidence 34455555544 467899999999999999998777665555543 33333 3789999998622 1
Q ss_pred -eeeEEeCCC--CCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCC
Q 019349 125 -ILDTIDTVP--NLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQG 201 (342)
Q Consensus 125 -~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg 201 (342)
.+...+.+. ......|++..++| ++++++ .+|.|++||-........+++-..+|..|..+.||++|+.-+. .
T Consensus 417 ~kl~~~q~kqy~~k~nFsc~aTT~sG-~IvvgS--~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~-t 492 (644)
T KOG2395|consen 417 NKLAVVQSKQYSTKNNFSCFATTESG-YIVVGS--LKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCK-T 492 (644)
T ss_pred ceeeeeeccccccccccceeeecCCc-eEEEee--cCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEecc-c
Confidence 121111111 11234455555555 666666 5899999997333334457888999999999999999876664 3
Q ss_pred cEEEEEEcC
Q 019349 202 TIIRVFLVS 210 (342)
Q Consensus 202 ~~irlwd~~ 210 (342)
.+ -|-++.
T Consensus 493 yL-lLi~t~ 500 (644)
T KOG2395|consen 493 YL-LLIDTL 500 (644)
T ss_pred EE-EEEEEe
Confidence 44 377663
No 326
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.01 E-value=0.002 Score=62.15 Aligned_cols=201 Identities=13% Similarity=0.122 Sum_probs=112.9
Q ss_pred EEcCCCCEEEEEcCCc-EEEEeCCCCcEEEEEe--eCC-EEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCC----
Q 019349 14 SFNQDNSGFALSTKDG-FKIFDSSTGRLCYERA--VGA-FSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTG---- 85 (342)
Q Consensus 14 ~fs~d~~~la~g~~~g-~~v~d~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~---- 85 (342)
+|++.+..++.|+.+| +.++| ...+.+.... ... +..+......++++.++-+..+ +...|++||+..-
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~--np~llkiw~lek~~~n~ 106 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQG--NPVLLKIWDLEKVDKNN 106 (933)
T ss_pred EEcCCCceEEEeeccccEEEec-ccceeeehheecchhhhhHhhcccCceEEEEEeecCCC--CceEEEEecccccCCCC
Confidence 5678888899999887 44444 2233323222 223 2223333334566666654332 2338999998542
Q ss_pred --cEEE---EEe--c---CCceEEEEEcCCeEEE-EE--CCeEEEEECC--CCceeeEEeCCCCCceEEEEeeCCCccEE
Q 019349 86 --TALR---ELN--F---LTSILAVRLNKKRLVI-VL--REKTYIYDAN--TLAILDTIDTVPNLKGLCAFSPSLNACFL 150 (342)
Q Consensus 86 --~~~~---~~~--~---~~~v~~i~~~~~~~~~-~~--d~~i~i~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 150 (342)
+++. .+. + +.++..++++.+...+ ++ +|.|..+.-. ..+-.+..-.+.....+.++....++..+
T Consensus 107 sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~ 186 (933)
T KOG2114|consen 107 SPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSV 186 (933)
T ss_pred CcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCcee
Confidence 2331 111 2 2366777777664333 33 7888887432 11111222223344456666665555442
Q ss_pred EEeCCCCccEEEEEEccCCce-eEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccC
Q 019349 151 AVPASTTKGSVLVYNVMELHS-HCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRG 221 (342)
Q Consensus 151 ~~~~~~~~g~i~iwd~~~~~~-~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~ 221 (342)
.... +...|.+|.+....+ ...+..|..+++|-++++....++.|+..+ +.+||....+.-..|..+
T Consensus 187 lFv~--Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e~--l~fY~sd~~~~cfaf~~g 254 (933)
T KOG2114|consen 187 LFVA--TTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSEF--LYFYDSDGRGPCFAFEVG 254 (933)
T ss_pred EEEE--ecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecCce--EEEEcCCCcceeeeecCC
Confidence 2222 246799999884443 455778889999999998655466665554 579998765555566533
No 327
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=98.01 E-value=0.00095 Score=65.54 Aligned_cols=133 Identities=15% Similarity=0.226 Sum_probs=90.7
Q ss_pred CCeEEEEECCCCceeeEEeCCCCCceEEEEeeC-------CCccEEEEeCCCCccEEEEEEccCCc--eeEE-Ee--ccc
Q 019349 112 REKTYIYDANTLAILDTIDTVPNLKGLCAFSPS-------LNACFLAVPASTTKGSVLVYNVMELH--SHCE-ID--AHQ 179 (342)
Q Consensus 112 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~g~i~iwd~~~~~--~~~~-~~--~h~ 179 (342)
.+.++-.|++.|+.+..+..+.+. .+..+++. +...++.. .+..+..||.+-.. .+.. .+ ...
T Consensus 503 ~~~ly~mDLe~GKVV~eW~~~~~~-~v~~~~p~~K~aqlt~e~tflGl----s~n~lfriDpR~~~~k~v~~~~k~Y~~~ 577 (794)
T PF08553_consen 503 PNKLYKMDLERGKVVEEWKVHDDI-PVVDIAPDSKFAQLTNEQTFLGL----SDNSLFRIDPRLSGNKLVDSQSKQYSSK 577 (794)
T ss_pred CCceEEEecCCCcEEEEeecCCCc-ceeEecccccccccCCCceEEEE----CCCceEEeccCCCCCceeeccccccccC
Confidence 358999999999999999886653 25666654 22333333 35779999987532 2211 11 234
Q ss_pred CCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecC
Q 019349 180 APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPG 257 (342)
Q Consensus 180 ~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~ 257 (342)
...+|++-+.+| +||.||.+|. ||+||- .|+.-++.-.+ -..+|..|..+.||+ ||++++. ..+-+++..
T Consensus 578 ~~Fs~~aTt~~G-~iavgs~~G~-IRLyd~-~g~~AKT~lp~-lG~pI~~iDvt~DGk---wilaTc~-tyLlLi~t~ 647 (794)
T PF08553_consen 578 NNFSCFATTEDG-YIAVGSNKGD-IRLYDR-LGKRAKTALPG-LGDPIIGIDVTADGK---WILATCK-TYLLLIDTL 647 (794)
T ss_pred CCceEEEecCCc-eEEEEeCCCc-EEeecc-cchhhhhcCCC-CCCCeeEEEecCCCc---EEEEeec-ceEEEEEEe
Confidence 578899888887 5999999998 699994 45433333222 245799999999999 8777664 467777753
No 328
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.96 E-value=0.0018 Score=63.66 Aligned_cols=132 Identities=13% Similarity=0.327 Sum_probs=90.2
Q ss_pred CCCeEEEEECCCCcEEEEEecCC--ceEEEEEc-------CCeEEEEE-CCeEEEEECCCC--ceeeE-EeCCCCCceEE
Q 019349 73 SPRRLCLFNTTTGTALRELNFLT--SILAVRLN-------KKRLVIVL-REKTYIYDANTL--AILDT-IDTVPNLKGLC 139 (342)
Q Consensus 73 ~d~~i~iwd~~~~~~~~~~~~~~--~v~~i~~~-------~~~~~~~~-d~~i~i~d~~~~--~~~~~-~~~~~~~~~~~ 139 (342)
.++.|.-.|+.+|+.+.++.... +|.+++.. +...+++. ++.+..||.+-. +++.. ...-.......
T Consensus 502 ~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs 581 (794)
T PF08553_consen 502 NPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFS 581 (794)
T ss_pred CCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCce
Confidence 46889999999999999998765 45666543 33445544 789999999753 23321 11111223455
Q ss_pred EEeeCCCccEEEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEc
Q 019349 140 AFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLV 209 (342)
Q Consensus 140 ~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~ 209 (342)
|++-.++| +||+++ .+|.||+||-........|++-..||..|..+.||++|+..+.. -+ -|+++
T Consensus 582 ~~aTt~~G-~iavgs--~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~t-yL-lLi~t 646 (794)
T PF08553_consen 582 CFATTEDG-YIAVGS--NKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKT-YL-LLIDT 646 (794)
T ss_pred EEEecCCc-eEEEEe--CCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecc-eE-EEEEE
Confidence 67776666 666666 58999999943323334567888999999999999998877654 34 47876
No 329
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.94 E-value=3.5e-05 Score=67.71 Aligned_cols=96 Identities=13% Similarity=0.129 Sum_probs=80.7
Q ss_pred EEEEEccCCceeEEEecccCCeeEEEECCCCC-EEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcc
Q 019349 161 VLVYNVMELHSHCEIDAHQAPLAAIVLSSNGM-YIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQ 239 (342)
Q Consensus 161 i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~-~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~ 239 (342)
|++.+..+.+....+..|...|..++|||..+ +|..++.+.+ |+|.|+++...+..+..+ ..+++++|.-|+.
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nk-iki~dlet~~~vssy~a~---~~~wSC~wDlde~-- 248 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNK-IKIMDLETSCVVSSYIAY---NQIWSCCWDLDER-- 248 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCce-EEEEecccceeeeheecc---CCceeeeeccCCc--
Confidence 88888888887777888999999999999877 7888888765 799999998877766432 4589999999887
Q ss_pred cEEEEEeCCCcEEEEecCCCCCC
Q 019349 240 DILVATSSSGSLHVFSPGFAINQ 262 (342)
Q Consensus 240 ~~l~~~s~dg~i~vwd~~~~~~~ 262 (342)
++|.+|-..|.|.|||++.++.+
T Consensus 249 h~IYaGl~nG~VlvyD~R~~~~~ 271 (463)
T KOG1645|consen 249 HVIYAGLQNGMVLVYDMRQPEGP 271 (463)
T ss_pred ceeEEeccCceEEEEEccCCCch
Confidence 69999999999999999887643
No 330
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.91 E-value=0.0071 Score=57.62 Aligned_cols=168 Identities=10% Similarity=0.022 Sum_probs=99.1
Q ss_pred CCeEEEEECCCCcEEEEEecCCceEEEEEcCCeEEEEECCeEEEEECCCCceeeEEeCCCCCceEEEEeeC------CCc
Q 019349 74 PRRLCLFNTTTGTALRELNFLTSILAVRLNKKRLVIVLREKTYIYDANTLAILDTIDTVPNLKGLCAFSPS------LNA 147 (342)
Q Consensus 74 d~~i~iwd~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~------~~~ 147 (342)
.+.+.+.|..+.+.+.++........+.+++++-.+.. -.||.+.+..+..+..... ..+..+.+. +++
T Consensus 214 ~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afv----TsyNsE~G~tl~em~a~e~-d~~vvfni~~iea~vkdG 288 (635)
T PRK02888 214 RSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFS----TCYNSEEGVTLAEMMAAER-DWVVVFNIARIEEAVKAG 288 (635)
T ss_pred eEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEE----eccCcccCcceeeeccccC-ceEEEEchHHHHHhhhCC
Confidence 34556666666666555555554444555544222211 1122333444444433221 123333322 244
Q ss_pred cEEEEeCCCCccEEEEEEccC-----CceeEEEecccCCeeEEEECCCCCEEEEEeC-CCcEEEEEEcCCCee-------
Q 019349 148 CFLAVPASTTKGSVLVYNVME-----LHSHCEIDAHQAPLAAIVLSSNGMYIATASE-QGTIIRVFLVSEATK------- 214 (342)
Q Consensus 148 ~~l~~~~~~~~g~i~iwd~~~-----~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~-dg~~irlwd~~~~~~------- 214 (342)
.+.... ++.|.+.|.++ .+.+..+..- .....|++||||++++.++. +.+ +-|.|+.+.+.
T Consensus 289 K~~~V~----gn~V~VID~~t~~~~~~~v~~yIPVG-KsPHGV~vSPDGkylyVanklS~t-VSVIDv~k~k~~~~~~~~ 362 (635)
T PRK02888 289 KFKTIG----GSKVPVVDGRKAANAGSALTRYVPVP-KNPHGVNTSPDGKYFIANGKLSPT-VTVIDVRKLDDLFDGKIK 362 (635)
T ss_pred CEEEEC----CCEEEEEECCccccCCcceEEEEECC-CCccceEECCCCCEEEEeCCCCCc-EEEEEChhhhhhhhccCC
Confidence 444442 36799999988 4556666643 34578999999999888775 455 57999987653
Q ss_pred -----EEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCC
Q 019349 215 -----SYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGF 258 (342)
Q Consensus 215 -----~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~ 258 (342)
..+..-+. + -...+|.++|. ...+---|..|-.|++++
T Consensus 363 ~~~~vvaevevGl--G-PLHTaFDg~G~---aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 363 PRDAVVAEPELGL--G-PLHTAFDGRGN---AYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred ccceEEEeeccCC--C-cceEEECCCCC---EEEeEeecceeEEEehHH
Confidence 33333222 2 23468999987 788888899999999987
No 331
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.91 E-value=0.02 Score=53.27 Aligned_cols=245 Identities=14% Similarity=0.118 Sum_probs=128.6
Q ss_pred eEEEEEcCCCCEEEEEcC-Cc-----EEEEeCCCCcEEEEEeeCCE-EEEEEcCCCCeEEEEcCCCCC----CCCCCeEE
Q 019349 10 VFFVSFNQDNSGFALSTK-DG-----FKIFDSSTGRLCYERAVGAF-SIVEMLYSSSLLAIVGAGEQP----SLSPRRLC 78 (342)
Q Consensus 10 V~~l~fs~d~~~la~g~~-~g-----~~v~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~----~~~d~~i~ 78 (342)
+...++||||++||.+.+ .| ++++|+.+++.+...-.... ..+.|..+++.+.....+... ......|.
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~ 205 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVY 205 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEE
Confidence 346789999999987632 22 58999999977654322111 227888887777776654221 11266799
Q ss_pred EEECCCCcEE--EEEecC--Cc-eEEEEEcCCe--EEEEE----C-CeEEEEECCCC----ceeeEEeCCCCCceEEEEe
Q 019349 79 LFNTTTGTAL--RELNFL--TS-ILAVRLNKKR--LVIVL----R-EKTYIYDANTL----AILDTIDTVPNLKGLCAFS 142 (342)
Q Consensus 79 iwd~~~~~~~--~~~~~~--~~-v~~i~~~~~~--~~~~~----d-~~i~i~d~~~~----~~~~~~~~~~~~~~~~~~~ 142 (342)
.|++.++..- .-++.+ .. ...+..+++. +++.. + ..+++.++... .....+...... ....+.
T Consensus 206 ~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~-~~~~v~ 284 (414)
T PF02897_consen 206 RHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDG-VEYYVD 284 (414)
T ss_dssp EEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS--EEEEE
T ss_pred EEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCc-eEEEEE
Confidence 9998876532 233322 23 5667776653 33333 3 56888898774 223333222221 122233
Q ss_pred eCCCccEEEEeCCCCccEEEEEEccCCce---eEEEecccC--CeeEEEECCCCCEEEE-EeCCCc-EEEEEEcCCCeeE
Q 019349 143 PSLNACFLAVPASTTKGSVLVYNVMELHS---HCEIDAHQA--PLAAIVLSSNGMYIAT-ASEQGT-IIRVFLVSEATKS 215 (342)
Q Consensus 143 ~~~~~~~l~~~~~~~~g~i~iwd~~~~~~---~~~~~~h~~--~v~~i~~s~dg~~lat-~s~dg~-~irlwd~~~~~~~ 215 (342)
..++..++.+......+.|...++..... ...+..|.. .+..+.. .+.+|+. --.++. .|+++++..+...
T Consensus 285 ~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~--~~~~Lvl~~~~~~~~~l~v~~~~~~~~~ 362 (414)
T PF02897_consen 285 HHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSL--FKDYLVLSYRENGSSRLRVYDLDDGKES 362 (414)
T ss_dssp EETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEE--ETTEEEEEEEETTEEEEEEEETT-TEEE
T ss_pred ccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEE--ECCEEEEEEEECCccEEEEEECCCCcEE
Confidence 33333444443322467888888877653 235555665 3555544 3444444 444432 2578998844444
Q ss_pred EEeccCcCceeEEEEEEecCCCcccEEEEEeCC---CcEEEEecCCCC
Q 019349 216 YSFRRGTYPSTIFSLSFGQSMQFQDILVATSSS---GSLHVFSPGFAI 260 (342)
Q Consensus 216 ~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~d---g~i~vwd~~~~~ 260 (342)
..+... ..+.|..+...+++. .+++..++- +++..||+.+++
T Consensus 363 ~~~~~p-~~g~v~~~~~~~~~~--~~~~~~ss~~~P~~~y~~d~~t~~ 407 (414)
T PF02897_consen 363 REIPLP-EAGSVSGVSGDFDSD--ELRFSYSSFTTPPTVYRYDLATGE 407 (414)
T ss_dssp EEEESS-SSSEEEEEES-TT-S--EEEEEEEETTEEEEEEEEETTTTC
T ss_pred eeecCC-cceEEeccCCCCCCC--EEEEEEeCCCCCCEEEEEECCCCC
Confidence 444322 233466666556554 234443332 467777777665
No 332
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.88 E-value=0.012 Score=50.09 Aligned_cols=179 Identities=13% Similarity=0.080 Sum_probs=105.2
Q ss_pred EEEEEcCCCCEEEEEcCCc---EEEEeCCCCcEEEEEeeCCEEEE-EEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCc
Q 019349 11 FFVSFNQDNSGFALSTKDG---FKIFDSSTGRLCYERAVGAFSIV-EMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGT 86 (342)
Q Consensus 11 ~~l~fs~d~~~la~g~~~g---~~v~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~ 86 (342)
..+.|..+|.++-+.+..| ++.+|+.+++.........-..- .+..-.+.+....- ..+...+||..+-+
T Consensus 48 QGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTW------k~~~~f~yd~~tl~ 121 (264)
T PF05096_consen 48 QGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTW------KEGTGFVYDPNTLK 121 (264)
T ss_dssp EEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEES------SSSEEEEEETTTTE
T ss_pred ccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEe------cCCeEEEEccccce
Confidence 4667766777655544443 69999999987655443221110 01111344544543 58999999999999
Q ss_pred EEEEEecCCceEEEEEcCCeEEEEE-CCeEEEEECCCCceeeEEeCCCCCceE---EEEeeCCCccEEEEeCCCCccEEE
Q 019349 87 ALRELNFLTSILAVRLNKKRLVIVL-REKTYIYDANTLAILDTIDTVPNLKGL---CAFSPSLNACFLAVPASTTKGSVL 162 (342)
Q Consensus 87 ~~~~~~~~~~v~~i~~~~~~~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~g~i~ 162 (342)
.+.++.++..=.+++...+.+++.. ..+++++|-.+.+..+.+....+...+ .-+-.- ++...|-.= ....|.
T Consensus 122 ~~~~~~y~~EGWGLt~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW--~td~I~ 198 (264)
T PF05096_consen 122 KIGTFPYPGEGWGLTSDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVW--QTDRIV 198 (264)
T ss_dssp EEEEEE-SSS--EEEECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEET--TSSEEE
T ss_pred EEEEEecCCcceEEEcCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeC--CCCeEE
Confidence 9999999888888997777665554 458999999888888877554332222 112221 343444332 345677
Q ss_pred EEEccCCceeEEEec------------c---cCCeeEEEECCCCCEEEEEe
Q 019349 163 VYNVMELHSHCEIDA------------H---QAPLAAIVLSSNGMYIATAS 198 (342)
Q Consensus 163 iwd~~~~~~~~~~~~------------h---~~~v~~i~~s~dg~~lat~s 198 (342)
..|..+|+.+..+.. + ..-.+.||+.|+...|..-+
T Consensus 199 ~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 199 RIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 788888887665520 1 24589999988665444433
No 333
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.86 E-value=5.2e-05 Score=43.42 Aligned_cols=38 Identities=29% Similarity=0.614 Sum_probs=33.3
Q ss_pred ceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEE
Q 019349 170 HSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFL 208 (342)
Q Consensus 170 ~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd 208 (342)
++...+..|...|+++.|+++++++++++.|+. +++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~-~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGT-IKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCe-EEEcC
Confidence 456677789999999999999999999999997 58996
No 334
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=97.81 E-value=0.00021 Score=61.04 Aligned_cols=155 Identities=13% Similarity=0.252 Sum_probs=92.2
Q ss_pred CCceEEEEEcCCeEEEE-ECC-eEEEEECCCC-ceeeEEeCCCCC-----ceEEEEeeCCCcc-EEEEeCCCCccEEEEE
Q 019349 94 LTSILAVRLNKKRLVIV-LRE-KTYIYDANTL-AILDTIDTVPNL-----KGLCAFSPSLNAC-FLAVPASTTKGSVLVY 164 (342)
Q Consensus 94 ~~~v~~i~~~~~~~~~~-~d~-~i~i~d~~~~-~~~~~~~~~~~~-----~~~~~~~~~~~~~-~l~~~~~~~~g~i~iw 164 (342)
+-.|.++.++.+.-... .|. +|.+|+++-. .....+...++. .-+.+.-++|..+ .+.+++ ..|.|++-
T Consensus 172 ~yhiNSiS~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSs--SkG~Ikl~ 249 (460)
T COG5170 172 PYHINSISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSS--SKGEIKLN 249 (460)
T ss_pred eeEeeeeeecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEec--CCCcEEeh
Confidence 33678899977654443 344 9999998643 222222222221 1122333444333 333444 47999999
Q ss_pred EccCCce----eE----E--------EecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCC-eeEEEeccCc-----
Q 019349 165 NVMELHS----HC----E--------IDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEA-TKSYSFRRGT----- 222 (342)
Q Consensus 165 d~~~~~~----~~----~--------~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~-~~~~~~~~~~----- 222 (342)
|++.... .. + +.+-.+.|..+.|+++|+++++-+-- + +++||++.. .++.++..+.
T Consensus 250 DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyl-t-vkiwDvnm~k~pikTi~~h~~l~~~ 327 (460)
T COG5170 250 DLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYL-T-VKIWDVNMAKNPIKTIPMHCDLMDE 327 (460)
T ss_pred hhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccc-e-EEEEecccccCCceeechHHHHHHH
Confidence 9984321 01 1 12233568889999999999987654 4 689999865 3555553211
Q ss_pred -----Ccee---EEEEEEecCCCcccEEEEEeCCCcEEEEe
Q 019349 223 -----YPST---IFSLSFGQSMQFQDILVATSSSGSLHVFS 255 (342)
Q Consensus 223 -----~~~~---v~~l~fs~d~~~~~~l~~~s~dg~i~vwd 255 (342)
.... -..+.||-|.+ .+.+||-.+..-+|-
T Consensus 328 l~d~YEnDaifdkFeisfSgd~~---~v~sgsy~NNfgiyp 365 (460)
T COG5170 328 LNDVYENDAIFDKFEISFSGDDK---HVLSGSYSNNFGIYP 365 (460)
T ss_pred HHhhhhccceeeeEEEEecCCcc---cccccccccceeeec
Confidence 0111 24578998888 788888877776665
No 335
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.80 E-value=0.018 Score=49.20 Aligned_cols=162 Identities=12% Similarity=0.108 Sum_probs=104.1
Q ss_pred CCCeEEEEECCCCcEEEEEecCCce--EEEEEcCCeEEEEE--CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCcc
Q 019349 73 SPRRLCLFNTTTGTALRELNFLTSI--LAVRLNKKRLVIVL--REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNAC 148 (342)
Q Consensus 73 ~d~~i~iwd~~~~~~~~~~~~~~~v--~~i~~~~~~~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (342)
....|+.+|+.+|+......++... -+++..++.++..+ ++...+||..+.+.+.++.-... -..++.++ .
T Consensus 66 G~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~~~f~yd~~tl~~~~~~~y~~E---GWGLt~dg--~ 140 (264)
T PF05096_consen 66 GQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKEGTGFVYDPNTLKKIGTFPYPGE---GWGLTSDG--K 140 (264)
T ss_dssp TEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEEE-SSS-----EEEECS--S
T ss_pred CcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecCCeEEEEccccceEEEEEecCCc---ceEEEcCC--C
Confidence 3568999999999999888887754 56888889888888 88999999999999988876543 33444443 3
Q ss_pred EEEEeCCCCccEEEEEEccCCceeEEEecc--c---CCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEecc---
Q 019349 149 FLAVPASTTKGSVLVYNVMELHSHCEIDAH--Q---APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRR--- 220 (342)
Q Consensus 149 ~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h--~---~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~--- 220 (342)
.|..+. ....++.+|..+.+....+.-. . ..++-+.+- +|...|=-=....+ -..|..+|+.+..+.-
T Consensus 141 ~Li~SD--GS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I-~~Idp~tG~V~~~iDls~L 216 (264)
T PF05096_consen 141 RLIMSD--GSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRI-VRIDPETGKVVGWIDLSGL 216 (264)
T ss_dssp CEEEE---SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEE-EEEETTT-BEEEEEE-HHH
T ss_pred EEEEEC--CccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeE-EEEeCCCCeEEEEEEhhHh
Confidence 444443 2478999999888877766532 2 245667774 56555544444444 4789999987765521
Q ss_pred -------Cc---CceeEEEEEEecCCCcccEEEEEe
Q 019349 221 -------GT---YPSTIFSLSFGQSMQFQDILVATS 246 (342)
Q Consensus 221 -------~~---~~~~v~~l~fs~d~~~~~~l~~~s 246 (342)
.. ...-.+.+|+.|... .|..++
T Consensus 217 ~~~~~~~~~~~~~~dVLNGIAyd~~~~---~l~vTG 249 (264)
T PF05096_consen 217 RPEVGRDKSRQPDDDVLNGIAYDPETD---RLFVTG 249 (264)
T ss_dssp HHHHTSTTST--TTS-EEEEEEETTTT---EEEEEE
T ss_pred hhcccccccccccCCeeEeEeEeCCCC---EEEEEe
Confidence 00 123489999999877 454444
No 336
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.78 E-value=0.0013 Score=61.08 Aligned_cols=93 Identities=16% Similarity=0.267 Sum_probs=65.5
Q ss_pred EEEEECCCCceeeE-EeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCE
Q 019349 115 TYIYDANTLAILDT-IDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMY 193 (342)
Q Consensus 115 i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~ 193 (342)
-.+|++...++.+. +..-+-+..+++.+.+|+...++.+. .||.|.+||...+... +..+.=..+.++|+|+|..
T Consensus 238 ~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC--~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp~gai 313 (545)
T PF11768_consen 238 SCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGC--EDGSIILYDTTRGVTL--LAKAEFIPTLIAWHPDGAI 313 (545)
T ss_pred EEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEe--cCCeEEEEEcCCCeee--eeeecccceEEEEcCCCcE
Confidence 46777765443221 11122334567778888888888877 6999999998766332 2233455789999999999
Q ss_pred EEEEeCCCcEEEEEEcCCC
Q 019349 194 IATASEQGTIIRVFLVSEA 212 (342)
Q Consensus 194 lat~s~dg~~irlwd~~~~ 212 (342)
+++|++.|. +.+||+.-.
T Consensus 314 ~~V~s~qGe-lQ~FD~ALs 331 (545)
T PF11768_consen 314 FVVGSEQGE-LQCFDMALS 331 (545)
T ss_pred EEEEcCCce-EEEEEeecC
Confidence 999999997 589998644
No 337
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.74 E-value=0.0041 Score=62.33 Aligned_cols=198 Identities=14% Similarity=0.118 Sum_probs=100.9
Q ss_pred CCCCeEEEEEcCCCCEEEEEcCCcEEEEeCCCCcEEEEEeeCCEEEEEEcCCCCeEEEEcCCCCC-CC--CCCeEEEEEC
Q 019349 6 SSYPVFFVSFNQDNSGFALSTKDGFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQP-SL--SPRRLCLFNT 82 (342)
Q Consensus 6 ~~~~V~~l~fs~d~~~la~g~~~g~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~--~d~~i~iwd~ 82 (342)
.+..|.+++||||+..++..+....-++...+...+.+.+.. .+- ...+..+.+|-|+.. ++ +.++...-+.
T Consensus 108 vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L~----~d~-~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~ 182 (1265)
T KOG1920|consen 108 VDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPLD----ADD-ERKSKFVNVGWGRKETQFRGSEGRQAARQK 182 (1265)
T ss_pred ccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccccc----ccc-ccccccceecccccceeeecchhhhccccc
Confidence 457899999999999998877755444443333333222110 000 000111222222100 00 0011110000
Q ss_pred CC-CcEEEEEecCCceEEEEEcCCeEEEEE-------C-CeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEe
Q 019349 83 TT-GTALRELNFLTSILAVRLNKKRLVIVL-------R-EKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVP 153 (342)
Q Consensus 83 ~~-~~~~~~~~~~~~v~~i~~~~~~~~~~~-------d-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 153 (342)
.. .+....+...+.=..|.|-.++-+++. + .+|++||-+ +.+...-. +....--++++.|.|..+|+.
T Consensus 183 ~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se--~~~~l~~~LsWkPsgs~iA~i 259 (1265)
T KOG1920|consen 183 IEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSE--PVEGLQHSLSWKPSGSLIAAI 259 (1265)
T ss_pred ccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhcccC--cccccccceeecCCCCeEeee
Confidence 00 000111112223345778766532222 4 689999976 43322211 111223467788888888876
Q ss_pred CCC-CccEEEEEEcc---CCceeEEEecccCCeeEEEECCCCCEEEE---EeCCCcEEEEEEcCCC
Q 019349 154 AST-TKGSVLVYNVM---ELHSHCEIDAHQAPLAAIVLSSNGMYIAT---ASEQGTIIRVFLVSEA 212 (342)
Q Consensus 154 ~~~-~~g~i~iwd~~---~~~~~~~~~~h~~~v~~i~~s~dg~~lat---~s~dg~~irlwd~~~~ 212 (342)
... .++.|.++.-. .++....++....+|..++|+.++..||+ ..+ +..|++|-+.+-
T Consensus 260 q~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e-~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 260 QCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLE-NSLVQLWTTGNY 324 (1265)
T ss_pred eecCCCCcEEEEecCCccccccccCCcccccchheeeecCCCCceeeeecccc-cceEEEEEecCe
Confidence 422 35678888843 23333334455566999999999999988 443 344689988664
No 338
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.72 E-value=0.039 Score=51.14 Aligned_cols=217 Identities=17% Similarity=0.238 Sum_probs=110.3
Q ss_pred EEEEcCCCCEEEEEcCC------------cEEEEeCCCCcEEEEE--eeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeE
Q 019349 12 FVSFNQDNSGFALSTKD------------GFKIFDSSTGRLCYER--AVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRL 77 (342)
Q Consensus 12 ~l~fs~d~~~la~g~~~------------g~~v~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i 77 (342)
-++.+|.|..+|+..++ .++||+.. |+++-+. ..+.+..+.|..+...+ ++. .++.+
T Consensus 33 ~va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~e~Lv-vV~-------~dG~v 103 (410)
T PF04841_consen 33 IVAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSS-GKLLSSIPWDSGRIVGMGWTDDEELV-VVQ-------SDGTV 103 (410)
T ss_pred eEEEcCCCceEEEEecCcccccccCCCCcEEEEECCC-CCEeEEEEECCCCEEEEEECCCCeEE-EEE-------cCCEE
Confidence 35667777777776655 47888855 4443332 22555556665544444 443 37899
Q ss_pred EEEECCCCcEEEEEecCC-----ce-----EEEEEcCCeEEEEE-CCeEEEEECCC-CceeeEEeCCCCCceEEEE----
Q 019349 78 CLFNTTTGTALRELNFLT-----SI-----LAVRLNKKRLVIVL-REKTYIYDANT-LAILDTIDTVPNLKGLCAF---- 141 (342)
Q Consensus 78 ~iwd~~~~~~~~~~~~~~-----~v-----~~i~~~~~~~~~~~-d~~i~i~d~~~-~~~~~~~~~~~~~~~~~~~---- 141 (342)
+++|+. |+. .+.... .| ..+.+.++++++.+ ++.+++.+-.. ....+.+. ..+......
T Consensus 104 ~vy~~~-G~~--~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt~~~~~~~v~n~~~~~~~~~~~--~~p~~~~~~~~~~ 178 (410)
T PF04841_consen 104 RVYDLF-GEF--QFSLGEEIEEEKVLECRIFAIWFYKNGIVVLTGNNRFYVVNNIDEPVKLRRLP--EIPGLWTKFHWWP 178 (410)
T ss_pred EEEeCC-Cce--eechhhhccccCcccccccccccCCCCEEEECCCCeEEEEeCccccchhhccc--cCCCccccccccc
Confidence 999986 333 222211 22 22344556666655 45554443222 11111111 001101000
Q ss_pred ------eeCCCccEEEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeE
Q 019349 142 ------SPSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKS 215 (342)
Q Consensus 142 ------~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~ 215 (342)
....+....+... .++.+.+.+-...+. +. ..+++..|++||+|++||--..+|.+ .+.+..-.+.+
T Consensus 179 ~~~~i~~l~~~~~~~i~~~--~g~~i~~i~~~~~~~---i~-~~~~i~~iavSpng~~iAl~t~~g~l-~v~ssDf~~~~ 251 (410)
T PF04841_consen 179 SWTVIPLLSSDRVVEILLA--NGETIYIIDENSFKQ---ID-SDGPIIKIAVSPNGKFIALFTDSGNL-WVVSSDFSEKL 251 (410)
T ss_pred ccccceEeecCcceEEEEe--cCCEEEEEEcccccc---cc-CCCCeEEEEECCCCCEEEEEECCCCE-EEEECccccee
Confidence 1111111111111 123444333222111 11 23689999999999999999999985 57777666666
Q ss_pred EEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEe
Q 019349 216 YSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFS 255 (342)
Q Consensus 216 ~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd 255 (342)
.++.... ......|.|.-+.. ++..- ...|.+..
T Consensus 252 ~e~~~~~-~~~p~~~~WCG~da----v~l~~-~~~l~lvg 285 (410)
T PF04841_consen 252 CEFDTDS-KSPPKQMAWCGNDA----VVLSW-EDELLLVG 285 (410)
T ss_pred EEeecCc-CCCCcEEEEECCCc----EEEEe-CCEEEEEC
Confidence 6665432 23456777776654 32222 34555554
No 339
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.71 E-value=0.0023 Score=59.41 Aligned_cols=212 Identities=12% Similarity=0.128 Sum_probs=101.7
Q ss_pred EEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEEEEEecCCceEEEEEcCC-eEEEEE-CCeEEEE-ECCCCceee
Q 019349 51 IVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRLNKK-RLVIVL-REKTYIY-DANTLAILD 127 (342)
Q Consensus 51 ~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~i~~~~~-~~~~~~-d~~i~i~-d~~~~~~~~ 127 (342)
.+...+++..+++++ ++.-.|+.....+.... +.-..+.|... ..++.. .++|.|+ ++. .+...
T Consensus 37 ~ls~npngr~v~V~g--------~geY~iyt~~~~r~k~~----G~g~~~vw~~~n~yAv~~~~~~I~I~kn~~-~~~~k 103 (443)
T PF04053_consen 37 SLSHNPNGRFVLVCG--------DGEYEIYTALAWRNKAF----GSGLSFVWSSRNRYAVLESSSTIKIYKNFK-NEVVK 103 (443)
T ss_dssp EEEE-TTSSEEEEEE--------TTEEEEEETTTTEEEEE----EE-SEEEE-TSSEEEEE-TTS-EEEEETTE-E-TT-
T ss_pred eEEECCCCCEEEEEc--------CCEEEEEEccCCccccc----CceeEEEEecCccEEEEECCCeEEEEEcCc-cccce
Confidence 355666777777765 45777776433332221 23344555544 444444 5689996 442 22223
Q ss_pred EEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEE
Q 019349 128 TIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVF 207 (342)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlw 207 (342)
.+..+.....+.. |..|+..+ ++.|.+||+.+++.++.+... +|..|.||++|+++|-.+.+.. .+.
T Consensus 104 ~i~~~~~~~~If~------G~LL~~~~---~~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~~i--~il 170 (443)
T PF04053_consen 104 SIKLPFSVEKIFG------GNLLGVKS---SDFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKDSI--YIL 170 (443)
T ss_dssp ----SS-EEEEE-------SSSEEEEE---TTEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S-SE--EEE
T ss_pred EEcCCcccceEEc------CcEEEEEC---CCCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCCeE--EEE
Confidence 4443333333433 55666665 357999999999999988743 4899999999999999998863 355
Q ss_pred EcCCC--------------eeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCcccccc
Q 019349 208 LVSEA--------------TKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILG 273 (342)
Q Consensus 208 d~~~~--------------~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~ 273 (342)
+.... ..+.++ ...|.+.+|..| - ++.+... .++.+= .+.. +.
T Consensus 171 ~~~~~~~~~~~~~g~e~~f~~~~E~-----~~~IkSg~W~~d-~---fiYtT~~--~lkYl~--~Ge~--------~~-- 227 (443)
T PF04053_consen 171 KYNLEAVAAIPEEGVEDAFELIHEI-----SERIKSGCWVED-C---FIYTTSN--HLKYLV--NGET--------GI-- 227 (443)
T ss_dssp EE-HHHHHHBTTTB-GGGEEEEEEE------S--SEEEEETT-E---EEEE-TT--EEEEEE--TTEE--------EE--
T ss_pred EecchhcccccccCchhceEEEEEe-----cceeEEEEEEcC-E---EEEEcCC--eEEEEE--cCCc--------ce--
Confidence 54322 222222 234777788765 4 5555443 555531 1110 00
Q ss_pred ccccccccccccccccceeeeccCCCccccEEEEEEeCCcEEEEEEecCC
Q 019349 274 SILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSINN 323 (342)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~~~~~~ 323 (342)
+-+.+. ..+.+...++.++|+....|+.+..|.++..+
T Consensus 228 ---------i~~ld~---~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~~~ 265 (443)
T PF04053_consen 228 ---------IAHLDK---PLYLLGYLPKENRLYLIDRDGNVISYELDLSE 265 (443)
T ss_dssp ---------EEE-SS-----EEEEEETTTTEEEEE-TT--EEEEE--HHH
T ss_pred ---------EEEcCC---ceEEEEEEccCCEEEEEECCCCEEEEEECHHH
Confidence 111110 00111112233789999999999999988754
No 340
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.62 E-value=0.0019 Score=57.98 Aligned_cols=235 Identities=13% Similarity=0.088 Sum_probs=143.6
Q ss_pred CCCeEEEEEcCCCCEEEEEcC--CcEEEEeCCCCcEEEEEeeC-CEEEEEEcCCCC----eEEEEcCCCCCCCCCCeEEE
Q 019349 7 SYPVFFVSFNQDNSGFALSTK--DGFKIFDSSTGRLCYERAVG-AFSIVEMLYSSS----LLAIVGAGEQPSLSPRRLCL 79 (342)
Q Consensus 7 ~~~V~~l~fs~d~~~la~g~~--~g~~v~d~~~~~~~~~~~~~-~~~~~~~~~~~~----~~~~~~~g~~~~~~d~~i~i 79 (342)
-..|.+++.+.||.++.+..+ ..+++||+++..+.--.... --..++|..+.+ .+++.. +.++.+.+
T Consensus 53 L~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~------~~sg~i~V 126 (558)
T KOG0882|consen 53 LGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSL------FKSGKIFV 126 (558)
T ss_pred HHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCCCceEEecCCCCeeeeEEeec------ccCCCcEE
Confidence 345778888999998888554 46799998776443111110 011234444433 333333 36789999
Q ss_pred EECCCCcE-EE-EEe-cCCceEEEEEcCCeEEEEE---CCeEEEEECCC-C-----ceeeEEeC-------CCCCceEEE
Q 019349 80 FNTTTGTA-LR-ELN-FLTSILAVRLNKKRLVIVL---REKTYIYDANT-L-----AILDTIDT-------VPNLKGLCA 140 (342)
Q Consensus 80 wd~~~~~~-~~-~~~-~~~~v~~i~~~~~~~~~~~---d~~i~i~d~~~-~-----~~~~~~~~-------~~~~~~~~~ 140 (342)
+|-..+-+ .. .-. +-++|..+..++-.-.+.+ .|.|.-|.... . ++...++. ........+
T Consensus 127 vD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts 206 (558)
T KOG0882|consen 127 VDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTS 206 (558)
T ss_pred ECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccc
Confidence 99654432 22 222 3458999988876655555 47899998862 1 12222211 111223456
Q ss_pred EeeCCCccEEEEeCCCCccEEEEEEccCCceeEEEe--------------------------------cccC-CeeEEEE
Q 019349 141 FSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEID--------------------------------AHQA-PLAAIVL 187 (342)
Q Consensus 141 ~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~--------------------------------~h~~-~v~~i~~ 187 (342)
+..+|++..++.-+ .|..|++++.++++.++.+. -|.. .-+.+.|
T Consensus 207 ~Efsp~g~qistl~--~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~f 284 (558)
T KOG0882|consen 207 FEFSPDGAQISTLN--PDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVF 284 (558)
T ss_pred eEEccccCcccccC--cccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEE
Confidence 77778888888877 68999999998886544332 1111 2345779
Q ss_pred CCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCc----------------Cce-------eEEEEEEecCCCcccEEEE
Q 019349 188 SSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGT----------------YPS-------TIFSLSFGQSMQFQDILVA 244 (342)
Q Consensus 188 s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~----------------~~~-------~v~~l~fs~d~~~~~~l~~ 244 (342)
...|++|+-|+-=| |++.++.+++....+-... +.. .-..+.|-+|-. ++++
T Consensus 285 des~~flly~t~~g--ikvin~~tn~v~ri~gk~e~ir~~~~sl~q~~~k~~~~~~~~~a~~np~~~~~~dpt---~~c~ 359 (558)
T KOG0882|consen 285 DESGNFLLYGTILG--IKVINLDTNTVVRILGKDEAIRFTRLSLYQGAQKSNLAALEVAASNNPLLEFQKDPT---IVCT 359 (558)
T ss_pred cCCCCEEEeeccee--EEEEEeecCeEEEEeccchhhhhhhHHHHhhhhhccchhhhhhhccCcccccCCCCe---EEEe
Confidence 99999999999887 6899999988765542110 000 011233556666 6777
Q ss_pred EeCCCcEEEE
Q 019349 245 TSSSGSLHVF 254 (342)
Q Consensus 245 ~s~dg~i~vw 254 (342)
+=..+.+++|
T Consensus 360 a~kk~rfylf 369 (558)
T KOG0882|consen 360 AFKKNRFYLF 369 (558)
T ss_pred eeecceEEEE
Confidence 7777788888
No 341
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.59 E-value=0.012 Score=56.55 Aligned_cols=178 Identities=11% Similarity=0.158 Sum_probs=116.1
Q ss_pred eEEEEEcCCCCEEEEEcCCc-EEEEeCCCC-cEEEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcE
Q 019349 10 VFFVSFNQDNSGFALSTKDG-FKIFDSSTG-RLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTA 87 (342)
Q Consensus 10 V~~l~fs~d~~~la~g~~~g-~~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~ 87 (342)
++|++++ ++.|+-|+-+| +.+++.+-. +..+.. . .-..++.+++.++. |++|.|--+-+.+.
T Consensus 42 is~~av~--~~~~~~GtH~g~v~~~~~~~~~~~~~~~---s----~~~~~Gey~asCS~-------DGkv~I~sl~~~~~ 105 (846)
T KOG2066|consen 42 ISCCAVH--DKFFALGTHRGAVYLTTCQGNPKTNFDH---S----SSILEGEYVASCSD-------DGKVVIGSLFTDDE 105 (846)
T ss_pred HHHHHhh--cceeeeccccceEEEEecCCcccccccc---c----ccccCCceEEEecC-------CCcEEEeeccCCcc
Confidence 4445554 35688888887 477775432 111110 0 11456788888875 99999999999999
Q ss_pred EEEEecCCceEEEEEcCC------eEEEEECCe-EEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccE
Q 019349 88 LRELNFLTSILAVRLNKK------RLVIVLREK-TYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGS 160 (342)
Q Consensus 88 ~~~~~~~~~v~~i~~~~~------~~~~~~d~~-i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~ 160 (342)
..++.+.-++.+|+++|+ +.+++++.. +.++.-+=.+.......+.....+.++++.++ ++|-+. .+|
T Consensus 106 ~~~~df~rpiksial~Pd~~~~~sk~fv~GG~aglvL~er~wlgnk~~v~l~~~eG~I~~i~W~g~--lIAWan--d~G- 180 (846)
T KOG2066|consen 106 ITQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAGLVLSERNWLGNKDSVVLSEGEGPIHSIKWRGN--LIAWAN--DDG- 180 (846)
T ss_pred ceeEecCCcceeEEeccchhhhhhhheeecCcceEEEehhhhhcCccceeeecCccceEEEEecCc--EEEEec--CCC-
Confidence 999999999999999998 334444322 66665421111112223344456778888754 899887 355
Q ss_pred EEEEEccCCceeEEEecccCCe------eEEEECCCCCEEEEEeCCCcEEEEEEcCC
Q 019349 161 VLVYNVMELHSHCEIDAHQAPL------AAIVLSSNGMYIATASEQGTIIRVFLVSE 211 (342)
Q Consensus 161 i~iwd~~~~~~~~~~~~h~~~v------~~i~~s~dg~~lat~s~dg~~irlwd~~~ 211 (342)
|++||+.+.+.+..++.....+ ..+.|.++ ..|+.|=.| + |++..++.
T Consensus 181 v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~-~~LVIGW~d-~-v~i~~I~~ 234 (846)
T KOG2066|consen 181 VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDE-DRLVIGWGD-S-VKICSIKK 234 (846)
T ss_pred cEEEeccccceeeccCCCCCCCCcccCCCceEecCC-CeEEEecCC-e-EEEEEEec
Confidence 9999999988877775433322 35778765 567777655 3 58888873
No 342
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.58 E-value=0.00021 Score=69.02 Aligned_cols=167 Identities=14% Similarity=0.172 Sum_probs=107.6
Q ss_pred ceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCc-E-----------
Q 019349 136 KGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGT-I----------- 203 (342)
Q Consensus 136 ~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~-~----------- 203 (342)
....+++++.+..+|+.+. -.|.|+++++.+|.......+|.++|+.|.=+.||.++++.|.-.. +
T Consensus 1102 ~~fTc~afs~~~~hL~vG~--~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~ 1179 (1516)
T KOG1832|consen 1102 ALFTCIAFSGGTNHLAVGS--HAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTGG 1179 (1516)
T ss_pred cceeeEEeecCCceEEeee--ccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhccccccC
Confidence 4556677777778999887 4799999999999999999999999999999999998887765222 1
Q ss_pred ----------------------------EEEEEcCCCeeEEEeccCcC--ceeEEEEEEecCCCcccEEEEEeCCCcEEE
Q 019349 204 ----------------------------IRVFLVSEATKSYSFRRGTY--PSTIFSLSFGQSMQFQDILVATSSSGSLHV 253 (342)
Q Consensus 204 ----------------------------irlwd~~~~~~~~~~~~~~~--~~~v~~l~fs~d~~~~~~l~~~s~dg~i~v 253 (342)
..+||++++..+.++-.+.. ...-++..|||+.. +++ .||- +
T Consensus 1180 ~~Hsf~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~---LIl---ndGv--L 1251 (1516)
T KOG1832|consen 1180 PRHSFDEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDT---LIL---NDGV--L 1251 (1516)
T ss_pred ccccccccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcc---eEe---eCce--e
Confidence 23455555544433211110 11135678999988 554 4553 8
Q ss_pred EecCCCCCCCCCCCccccc-cccccccc-----cccccccccceeeeccCCCccccEEEEEEeCCcEE
Q 019349 254 FSPGFAINQRRGGRTSSIL-GSILPESV-----NEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFV 315 (342)
Q Consensus 254 wd~~~~~~~~~~~~~~~~~-~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~ 315 (342)
||++.++..+++.+.+-++ |+|.|... .++|+.-.++.++..... +..-++..+.|.|.
T Consensus 1252 WDvR~~~aIh~FD~ft~~~~G~FHP~g~eVIINSEIwD~RTF~lLh~VP~L---dqc~VtFNstG~Vm 1316 (1516)
T KOG1832|consen 1252 WDVRIPEAIHRFDQFTDYGGGGFHPSGNEVIINSEIWDMRTFKLLHSVPSL---DQCAVTFNSTGDVM 1316 (1516)
T ss_pred eeeccHHHHhhhhhheecccccccCCCceEEeechhhhhHHHHHHhcCccc---cceEEEeccCccch
Confidence 9999887766665555433 34566543 468888765544322111 13345555556554
No 343
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.52 E-value=0.052 Score=47.28 Aligned_cols=193 Identities=13% Similarity=0.110 Sum_probs=116.1
Q ss_pred CeEEEEEcCCCCEEEEEcCCcEEEEeCCCCcEEEE---------------E-eeCCEEEEE--EcCCCCeEEEEcCCCCC
Q 019349 9 PVFFVSFNQDNSGFALSTKDGFKIFDSSTGRLCYE---------------R-AVGAFSIVE--MLYSSSLLAIVGAGEQP 70 (342)
Q Consensus 9 ~V~~l~fs~d~~~la~g~~~g~~v~d~~~~~~~~~---------------~-~~~~~~~~~--~~~~~~~~~~~~~g~~~ 70 (342)
+|..+..-|+-+.|++=++..+.+|+++....... . ...++...+ -.......+++..
T Consensus 37 ~I~ql~vl~~~~~llvLsd~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~---- 112 (275)
T PF00780_consen 37 SITQLSVLPELNLLLVLSDGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAV---- 112 (275)
T ss_pred eEEEEEEecccCEEEEEcCCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEE----
Confidence 48899999988887777777789999765533221 1 112333333 1122233333332
Q ss_pred CCCCCeEEEEECCCC-----cEEEEEecCCceEEEEEcCCeEEEEECCeEEEEECCCCceeeEEeCCCC----------C
Q 019349 71 SLSPRRLCLFNTTTG-----TALRELNFLTSILAVRLNKKRLVIVLREKTYIYDANTLAILDTIDTVPN----------L 135 (342)
Q Consensus 71 ~~~d~~i~iwd~~~~-----~~~~~~~~~~~v~~i~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~----------~ 135 (342)
.++|.+|..... +...++..+..+.++.|.++.++++..+...+.|+.++....-+..... .
T Consensus 113 ---kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~~~~i~v~~~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~ 189 (275)
T PF00780_consen 113 ---KKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFLGNKICVGTSKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSS 189 (275)
T ss_pred ---CCEEEEEEEECCcccccceeEEEEcCCCcEEEEEeCCEEEEEeCCceEEEecCCCCceEEeCccCCcchhhhcccCC
Confidence 568888887542 5677888899999999999999999988999999997654433321111 1
Q ss_pred ceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCceeE--EEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCe
Q 019349 136 KGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHC--EIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEAT 213 (342)
Q Consensus 136 ~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~--~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~ 213 (342)
..+..+... ++.+|++-. . +-++=-..|++.+ .++-. ..+.++++. ..+|+.-+.++ |.||++.+++
T Consensus 190 ~~~~~~~~~-~~e~Ll~~~----~-~g~fv~~~G~~~r~~~i~W~-~~p~~~~~~--~pyli~~~~~~--iEV~~~~~~~ 258 (275)
T PF00780_consen 190 KPLGIFQLS-DNEFLLCYD----N-IGVFVNKNGEPSRKSTIQWS-SAPQSVAYS--SPYLIAFSSNS--IEVRSLETGE 258 (275)
T ss_pred CceEEEEeC-CceEEEEec----c-eEEEEcCCCCcCcccEEEcC-CchhEEEEE--CCEEEEECCCE--EEEEECcCCc
Confidence 122233332 234544322 2 2232223444332 33332 245566664 35787777654 6899999999
Q ss_pred eEEEec
Q 019349 214 KSYSFR 219 (342)
Q Consensus 214 ~~~~~~ 219 (342)
.++.+.
T Consensus 259 lvQ~i~ 264 (275)
T PF00780_consen 259 LVQTIP 264 (275)
T ss_pred EEEEEE
Confidence 888774
No 344
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.48 E-value=0.0007 Score=63.12 Aligned_cols=93 Identities=16% Similarity=0.198 Sum_probs=73.3
Q ss_pred eEEEEeeCCCccEEEEeCCCCccEEEEEEccCCceeEEEecccCCee-EEEECCCCCEEEEEeCCCcEEEEEEcCCCeeE
Q 019349 137 GLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLA-AIVLSSNGMYIATASEQGTIIRVFLVSEATKS 215 (342)
Q Consensus 137 ~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~-~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~ 215 (342)
.+.-+-++|....+|+.. .+|.|.+..+. -+.+.+++-|..+++ +++|.|||++||.|-.||+ |++.|+.+|..+
T Consensus 22 ~i~~~ewnP~~dLiA~~t--~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~-I~L~Dve~~~~l 97 (665)
T KOG4640|consen 22 NIKRIEWNPKMDLIATRT--EKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGT-IRLHDVEKGGRL 97 (665)
T ss_pred ceEEEEEcCccchhheec--cCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCe-EEEEEccCCCce
Confidence 445556667666888876 68999999988 778888887888888 9999999999999999998 589999999888
Q ss_pred EEeccCcCceeEEEEEEec
Q 019349 216 YSFRRGTYPSTIFSLSFGQ 234 (342)
Q Consensus 216 ~~~~~~~~~~~v~~l~fs~ 234 (342)
..+.. .....|.++-|++
T Consensus 98 ~~~~~-s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 98 VSFLF-SVETDISKGIWDR 115 (665)
T ss_pred ecccc-ccccchheeeccc
Confidence 76422 2234577777763
No 345
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.40 E-value=0.082 Score=46.78 Aligned_cols=180 Identities=12% Similarity=0.068 Sum_probs=100.1
Q ss_pred CCCeEEEEECCCCcEEEEEecCCceEE-EEEcCCeEEEEECCeEEEEECCCCceeeEEeCCCC---CceEEEEeeCCCcc
Q 019349 73 SPRRLCLFNTTTGTALRELNFLTSILA-VRLNKKRLVIVLREKTYIYDANTLAILDTIDTVPN---LKGLCAFSPSLNAC 148 (342)
Q Consensus 73 ~d~~i~iwd~~~~~~~~~~~~~~~v~~-i~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 148 (342)
..+.|.-||..+++. ..+..++.+.+ ...+..+.+++.+..++++++.++.....+..... .........++++.
T Consensus 45 ~~~~i~r~~~~~g~~-~~~~~p~~~~~~~~~d~~g~Lv~~~~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~ 123 (307)
T COG3386 45 LGGRIHRLDPETGKK-RVFPSPGGFSSGALIDAGGRLIACEHGVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGR 123 (307)
T ss_pred CCCeEEEecCCcCce-EEEECCCCcccceeecCCCeEEEEccccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCC
Confidence 367888898876653 34444554443 44577788888888888899866655333321111 01111222344555
Q ss_pred EEEEeCC---------CCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCC--Cee---
Q 019349 149 FLAVPAS---------TTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSE--ATK--- 214 (342)
Q Consensus 149 ~l~~~~~---------~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~--~~~--- 214 (342)
+.+..-. ...|.|.-+|. .+..+..+..|-..-+.|+|||||+.|..+-.....|.-|++.. +..
T Consensus 124 ~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~ 202 (307)
T COG3386 124 IWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGR 202 (307)
T ss_pred EEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCc
Confidence 5443321 12343444443 45555556666666789999999988888876644344555531 211
Q ss_pred EEEeccCcCceeEEEEEEecCCCcccEEEEEeCCC-cEEEEecC
Q 019349 215 SYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSG-SLHVFSPG 257 (342)
Q Consensus 215 ~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg-~i~vwd~~ 257 (342)
...+.....++..-.++...+|. +.+++-..| .|.+|+.+
T Consensus 203 ~~~~~~~~~~G~PDG~~vDadG~---lw~~a~~~g~~v~~~~pd 243 (307)
T COG3386 203 RGFVDFDEEPGLPDGMAVDADGN---LWVAAVWGGGRVVRFNPD 243 (307)
T ss_pred ceEEEccCCCCCCCceEEeCCCC---EEEecccCCceEEEECCC
Confidence 10111111223345577777887 554444444 89999876
No 346
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.38 E-value=0.15 Score=49.02 Aligned_cols=188 Identities=16% Similarity=0.108 Sum_probs=107.0
Q ss_pred CEEEEEcCCc-EEEEeCCCCcEEEEEeeCC---EEEE-E-------EcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcE
Q 019349 20 SGFALSTKDG-FKIFDSSTGRLCYERAVGA---FSIV-E-------MLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTA 87 (342)
Q Consensus 20 ~~la~g~~~g-~~v~d~~~~~~~~~~~~~~---~~~~-~-------~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~ 87 (342)
..|.+++.++ +.-+|..+|+++.+..... .... . .....+.+.+.+ .++.|.-.|.++|+.
T Consensus 70 g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t-------~dg~l~ALDa~TGk~ 142 (527)
T TIGR03075 70 GVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGT-------LDARLVALDAKTGKV 142 (527)
T ss_pred CEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEc-------CCCEEEEEECCCCCE
Confidence 3455555444 5677888998876543211 1100 0 011123333333 378999999999999
Q ss_pred EEEEecCC-----ceEE-EEEcCCeEEEEE-------CCeEEEEECCCCceeeEEeCCCCCce-----------------
Q 019349 88 LRELNFLT-----SILA-VRLNKKRLVIVL-------REKTYIYDANTLAILDTIDTVPNLKG----------------- 137 (342)
Q Consensus 88 ~~~~~~~~-----~v~~-i~~~~~~~~~~~-------d~~i~i~d~~~~~~~~~~~~~~~~~~----------------- 137 (342)
+.+..... .+.+ -.+..+.+++.. ++.|+-+|.++++.+..+.+......
T Consensus 143 ~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~t 222 (527)
T TIGR03075 143 VWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKT 222 (527)
T ss_pred EeecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCC
Confidence 88765421 1111 122345555543 46899999999998877654322100
Q ss_pred ------------E-EEEeeCCCccEEEEeCCC----------C----ccEEEEEEccCCceeEEEec--cc-------CC
Q 019349 138 ------------L-CAFSPSLNACFLAVPAST----------T----KGSVLVYNVMELHSHCEIDA--HQ-------AP 181 (342)
Q Consensus 138 ------------~-~~~~~~~~~~~l~~~~~~----------~----~g~i~iwd~~~~~~~~~~~~--h~-------~~ 181 (342)
+ ..++.+++..++..+... . ...|.-.|+++++..-.++. |. .+
T Consensus 223 w~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~ 302 (527)
T TIGR03075 223 WPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNE 302 (527)
T ss_pred CCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCC
Confidence 0 122444443344333210 0 12677789999998766653 21 12
Q ss_pred eeEEEECCCCC---EEEEEeCCCcEEEEEEcCCCeeE
Q 019349 182 LAAIVLSSNGM---YIATASEQGTIIRVFLVSEATKS 215 (342)
Q Consensus 182 v~~i~~s~dg~---~lat~s~dg~~irlwd~~~~~~~ 215 (342)
..-+.+..+|+ .++.+..+|.+ .+.|-.+|+.+
T Consensus 303 p~l~d~~~~G~~~~~v~~~~K~G~~-~vlDr~tG~~i 338 (527)
T TIGR03075 303 MILFDLKKDGKPRKLLAHADRNGFF-YVLDRTNGKLL 338 (527)
T ss_pred cEEEEeccCCcEEEEEEEeCCCceE-EEEECCCCcee
Confidence 22334445776 78889999974 69999999886
No 347
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.35 E-value=0.035 Score=49.45 Aligned_cols=240 Identities=9% Similarity=0.046 Sum_probs=120.5
Q ss_pred CCCCCeEEEEEcCCCC-EEEEEc-CCcEEEEeCCCCcEEEEEee-CCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEE
Q 019349 5 SSSYPVFFVSFNQDNS-GFALST-KDGFKIFDSSTGRLCYERAV-GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFN 81 (342)
Q Consensus 5 ~~~~~V~~l~fs~d~~-~la~g~-~~g~~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd 81 (342)
.+...|+.++|||... +|..++ ++.++|.|+++......... ..+-..+|..+....+.+|. ..+.|.++|
T Consensus 191 ~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaGl------~nG~VlvyD 264 (463)
T KOG1645|consen 191 GEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAGL------QNGMVLVYD 264 (463)
T ss_pred ccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCCcceeEEec------cCceEEEEE
Confidence 4456799999999887 454444 55689999988755433222 45556677777777777776 589999999
Q ss_pred CCCCcEE-EEEec---CCceEEEEE-------cCCeEEEEECCeEEEEECCC--CceeeEEeCCCCCceEEEEeeCCCcc
Q 019349 82 TTTGTAL-RELNF---LTSILAVRL-------NKKRLVIVLREKTYIYDANT--LAILDTIDTVPNLKGLCAFSPSLNAC 148 (342)
Q Consensus 82 ~~~~~~~-~~~~~---~~~v~~i~~-------~~~~~~~~~d~~i~i~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (342)
++..+-. .++.. ..+|..++. .-.+++++.--....|++.- .......+. ..+.....+...+-..
T Consensus 265 ~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~l~f~ei~~s~~~~p~vlel-e~pG~cismqy~~~sn 343 (463)
T KOG1645|consen 265 MRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTVLQFYEIVFSAECLPCVLEL-EPPGICISMQYHGVSN 343 (463)
T ss_pred ccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehhhhhhhhhccccCCCccccc-CCCcceeeeeecCccc
Confidence 9865432 12211 124444332 22344444433444555421 111111111 1122222333333222
Q ss_pred EEEEeCCCC-----ccEEEE-EEccCCceeEEE-eccc-C------CeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCee
Q 019349 149 FLAVPASTT-----KGSVLV-YNVMELHSHCEI-DAHQ-A------PLAAIVLSSNGMYIATASEQGTIIRVFLVSEATK 214 (342)
Q Consensus 149 ~l~~~~~~~-----~g~i~i-wd~~~~~~~~~~-~~h~-~------~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~ 214 (342)
.+...-+.. -..|-. -|-..|.++..- ..|. + .=..+.=.++.++|+.-+.+.+-+.+||..+++.
T Consensus 344 h~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s~ev 423 (463)
T KOG1645|consen 344 HLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHSFEV 423 (463)
T ss_pred eEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccchhhe
Confidence 222111100 000111 122223222111 1110 0 0112222356666665555544467999999999
Q ss_pred EEEeccCcCceeEEEEEEecC-CCcccEEEEEeCCCcEEEEecC
Q 019349 215 SYSFRRGTYPSTIFSLSFGQS-MQFQDILVATSSSGSLHVFSPG 257 (342)
Q Consensus 215 ~~~~~~~~~~~~v~~l~fs~d-~~~~~~l~~~s~dg~i~vwd~~ 257 (342)
++++.. ..+|.+++...- +. ++|++=. |..++||..+
T Consensus 424 vQ~l~~---~epv~Dicp~~~n~~--syLa~LT-d~~v~Iyk~e 461 (463)
T KOG1645|consen 424 VQTLAL---SEPVLDICPNDTNGS--SYLALLT-DDRVHIYKNE 461 (463)
T ss_pred eeeccc---CcceeecceeecCCc--chhhhee-cceEEEEecC
Confidence 988853 245777765443 32 3565544 5688998654
No 348
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.26 E-value=0.027 Score=52.29 Aligned_cols=155 Identities=15% Similarity=0.101 Sum_probs=90.9
Q ss_pred CeEEEEECCCCcEEEEEecCCceEEEEEcCCe--EEEEE--CC--eEEEEECCCCceeeEEeCCCCCceEEEEeeCCCcc
Q 019349 75 RRLCLFNTTTGTALRELNFLTSILAVRLNKKR--LVIVL--RE--KTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNAC 148 (342)
Q Consensus 75 ~~i~iwd~~~~~~~~~~~~~~~v~~i~~~~~~--~~~~~--d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (342)
..+.++|+.+++......+...-..-.|+|++ ++++. ++ .|+++|+...+..+ +........ .=+++|++.
T Consensus 218 ~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~-Lt~~~gi~~--~Ps~spdG~ 294 (425)
T COG0823 218 PRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPR-LTNGFGINT--SPSWSPDGS 294 (425)
T ss_pred ceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCccee-cccCCcccc--CccCCCCCC
Confidence 46899999998877666666655556677754 44444 44 78889998776333 322222111 335677888
Q ss_pred EEEEeCCCCccE--EEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCC-Cc-EEEEEEcCCCeeEEEeccCcCc
Q 019349 149 FLAVPASTTKGS--VLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQ-GT-IIRVFLVSEATKSYSFRRGTYP 224 (342)
Q Consensus 149 ~l~~~~~~~~g~--i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~d-g~-~irlwd~~~~~~~~~~~~~~~~ 224 (342)
.+++.+. ..|. |.++|....+. ..+......=..-.+||||++|+..+.. |. .|-+.|+.++..+..+...
T Consensus 295 ~ivf~Sd-r~G~p~I~~~~~~g~~~-~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~--- 369 (425)
T COG0823 295 KIVFTSD-RGGRPQIYLYDLEGSQV-TRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILTST--- 369 (425)
T ss_pred EEEEEeC-CCCCcceEEECCCCCce-eEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEcccc---
Confidence 8888764 4565 45555555543 3333222222256799999999988753 32 1346666666543333211
Q ss_pred eeEEEEEEecCCC
Q 019349 225 STIFSLSFGQSMQ 237 (342)
Q Consensus 225 ~~v~~l~fs~d~~ 237 (342)
.....-.|.++++
T Consensus 370 ~~~e~ps~~~ng~ 382 (425)
T COG0823 370 YLNESPSWAPNGR 382 (425)
T ss_pred ccCCCCCcCCCCc
Confidence 1123446677776
No 349
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.25 E-value=0.15 Score=49.87 Aligned_cols=191 Identities=17% Similarity=0.158 Sum_probs=103.0
Q ss_pred EEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEE-EEEe-cCCc-eEEEEEcCCe--EEEEE-C-C----eEEEE
Q 019349 50 SIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTAL-RELN-FLTS-ILAVRLNKKR--LVIVL-R-E----KTYIY 118 (342)
Q Consensus 50 ~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~-~~~~-~~~~-v~~i~~~~~~--~~~~~-d-~----~i~i~ 118 (342)
.+..+..+...+++.+ .++.|.+.| ++... ..+. ++.. |.-+....+. ++... | + .++||
T Consensus 27 ~isc~~s~~~~vvigt-------~~G~V~~Ln--~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw 97 (933)
T KOG2114|consen 27 AISCCSSSTGSVVIGT-------ADGRVVILN--SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIW 97 (933)
T ss_pred ceeEEcCCCceEEEee-------ccccEEEec--ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEe
Confidence 3344444445555544 367666655 33322 4433 2334 4444444442 22222 3 2 58999
Q ss_pred ECCC------CceeeE--EeC---CCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEcc----CCceeEEEecccCCee
Q 019349 119 DANT------LAILDT--IDT---VPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVM----ELHSHCEIDAHQAPLA 183 (342)
Q Consensus 119 d~~~------~~~~~~--~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~----~~~~~~~~~~h~~~v~ 183 (342)
+++. ++++.. +-+ +.++....+++.+.+-..+|++ . .+|.|..+.-. .+........-..||+
T Consensus 98 ~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~G-f-~nG~V~~~~GDi~RDrgsr~~~~~~~~~pIT 175 (933)
T KOG2114|consen 98 DLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCG-F-TNGLVICYKGDILRDRGSRQDYSHRGKEPIT 175 (933)
T ss_pred cccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEE-e-cCcEEEEEcCcchhccccceeeeccCCCCce
Confidence 9953 334422 222 2233445555555555566655 4 68999998532 1222222223457999
Q ss_pred EEEECCCCCE-EEEEeCCCcEEEEEEcCCCee-EEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCC
Q 019349 184 AIVLSSNGMY-IATASEQGTIIRVFLVSEATK-SYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFA 259 (342)
Q Consensus 184 ~i~~s~dg~~-lat~s~dg~~irlwd~~~~~~-~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~ 259 (342)
.+++..++.. +..+... . |.+|.+....+ ...+. .+...+.|-+|++... .|++++. .-+.+|+.+..
T Consensus 176 gL~~~~d~~s~lFv~Tt~-~-V~~y~l~gr~p~~~~ld--~~G~~lnCss~~~~t~---qfIca~~-e~l~fY~sd~~ 245 (933)
T KOG2114|consen 176 GLALRSDGKSVLFVATTE-Q-VMLYSLSGRTPSLKVLD--NNGISLNCSSFSDGTY---QFICAGS-EFLYFYDSDGR 245 (933)
T ss_pred eeEEecCCceeEEEEecc-e-eEEEEecCCCcceeeec--cCCccceeeecCCCCc---cEEEecC-ceEEEEcCCCc
Confidence 9999999887 3333333 4 47999873332 22232 2345688889987654 3555443 46999987643
No 350
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.20 E-value=0.0021 Score=62.06 Aligned_cols=92 Identities=15% Similarity=0.172 Sum_probs=69.6
Q ss_pred CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCC
Q 019349 112 REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNG 191 (342)
Q Consensus 112 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg 191 (342)
.|.|-||- .+|++.+.+.- |....+++++|....||.+= .-|.+.+|...+.+.-.....|..+|.-+.|||+|
T Consensus 40 ~GSVtIfa-dtGEPqr~Vt~---P~hatSLCWHpe~~vLa~gw--e~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G 113 (1416)
T KOG3617|consen 40 GGSVTIFA-DTGEPQRDVTY---PVHATSLCWHPEEFVLAQGW--EMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDG 113 (1416)
T ss_pred CceEEEEe-cCCCCCccccc---ceehhhhccChHHHHHhhcc--ccceeEEEecCCceeeeeccCCCCCceeEEecCCC
Confidence 56777773 34544444332 33355688999887777654 57999999988876665666799999999999999
Q ss_pred CEEEEEeCCCcEEEEEEcC
Q 019349 192 MYIATASEQGTIIRVFLVS 210 (342)
Q Consensus 192 ~~lat~s~dg~~irlwd~~ 210 (342)
+.|+|+..-|. +.+|...
T Consensus 114 ~~l~t~d~~g~-v~lwr~d 131 (1416)
T KOG3617|consen 114 TVLMTLDNPGS-VHLWRYD 131 (1416)
T ss_pred CeEEEcCCCce-eEEEEee
Confidence 99999999886 4799875
No 351
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.19 E-value=0.0018 Score=64.07 Aligned_cols=102 Identities=14% Similarity=0.222 Sum_probs=70.3
Q ss_pred cEEEEeCCCCccEEEEEEccCC-ceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCcee
Q 019349 148 CFLAVPASTTKGSVLVYNVMEL-HSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPST 226 (342)
Q Consensus 148 ~~l~~~~~~~~g~i~iwd~~~~-~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~ 226 (342)
..++++. ..|.|-..|+... .+...-+.-.++|++++|+.||+.++.|-.+|. |.+||+..++.+..+..+.++..
T Consensus 100 ~~ivi~T--s~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~-V~v~D~~~~k~l~~i~e~~ap~t 176 (1206)
T KOG2079|consen 100 VPIVIGT--SHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGH-VTVWDMHRAKILKVITEHGAPVT 176 (1206)
T ss_pred eeEEEEc--CchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCc-EEEEEccCCcceeeeeecCCccc
Confidence 3566665 4688888887653 222222233579999999999999999999997 58999999988887765443322
Q ss_pred -EEEEEEecCCCcccEEEEEeCCCcEEEEecC
Q 019349 227 -IFSLSFGQSMQFQDILVATSSSGSLHVFSPG 257 (342)
Q Consensus 227 -v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~ 257 (342)
|..+.+..++. .+.++...|. +|.+.
T Consensus 177 ~vi~v~~t~~nS---~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 177 GVIFVGRTSQNS---KLLTSDTGGS--FWKLV 203 (1206)
T ss_pred eEEEEEEeCCCc---EEEEccCCCc--eEEEE
Confidence 33344445555 6888888887 66653
No 352
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.16 E-value=0.21 Score=46.40 Aligned_cols=168 Identities=16% Similarity=0.190 Sum_probs=86.0
Q ss_pred eEEEEECCCCcEEEEEecC-CceEEEEEcCC-eEEEEE-CCeEEEEECCCCceeeEEeCCCCCceE-----EEEeeCCCc
Q 019349 76 RLCLFNTTTGTALRELNFL-TSILAVRLNKK-RLVIVL-REKTYIYDANTLAILDTIDTVPNLKGL-----CAFSPSLNA 147 (342)
Q Consensus 76 ~i~iwd~~~~~~~~~~~~~-~~v~~i~~~~~-~~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 147 (342)
.|++|+. .|+.+.++... +.+.++.|+.+ .+++.. +|.+++||+.... ...+........+ .......+|
T Consensus 62 ~I~iys~-sG~ll~~i~w~~~~iv~~~wt~~e~LvvV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~~~~~~~~G 139 (410)
T PF04841_consen 62 SIQIYSS-SGKLLSSIPWDSGRIVGMGWTDDEELVVVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECRIFAIWFYKNG 139 (410)
T ss_pred EEEEECC-CCCEeEEEEECCCCEEEEEECCCCeEEEEEcCCEEEEEeCCCce-eechhhhccccCcccccccccccCCCC
Confidence 6999986 57778877654 58999999765 444444 8999999986333 1111111111111 111122233
Q ss_pred cEEEEeCCCCccEEEEEEccCCc-eeEE---Eec-----ccCCe-eE-EEECCCCCEEEEEeCCCcEEEEEEcCCCeeEE
Q 019349 148 CFLAVPASTTKGSVLVYNVMELH-SHCE---IDA-----HQAPL-AA-IVLSSNGMYIATASEQGTIIRVFLVSEATKSY 216 (342)
Q Consensus 148 ~~l~~~~~~~~g~i~iwd~~~~~-~~~~---~~~-----h~~~v-~~-i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~ 216 (342)
.++..+ ++.+.+.+-.... .... +.. |..+. .. ..++.+....+....++. +.+.+-...+.
T Consensus 140 -ivvLt~---~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~-i~~i~~~~~~~-- 212 (410)
T PF04841_consen 140 -IVVLTG---NNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGET-IYIIDENSFKQ-- 212 (410)
T ss_pred -EEEECC---CCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCE-EEEEEcccccc--
Confidence 222222 3444443221111 1111 111 11111 11 234555555555544443 33333222111
Q ss_pred EeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCC
Q 019349 217 SFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFA 259 (342)
Q Consensus 217 ~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~ 259 (342)
+. ..+++..|++||+++ ++|.-..+|.+.|.+.+-.
T Consensus 213 -i~---~~~~i~~iavSpng~---~iAl~t~~g~l~v~ssDf~ 248 (410)
T PF04841_consen 213 -ID---SDGPIIKIAVSPNGK---FIALFTDSGNLWVVSSDFS 248 (410)
T ss_pred -cc---CCCCeEEEEECCCCC---EEEEEECCCCEEEEECccc
Confidence 11 124699999999999 9999999999999875443
No 353
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.13 E-value=0.0017 Score=36.64 Aligned_cols=29 Identities=17% Similarity=0.438 Sum_probs=26.1
Q ss_pred ceeEEEEEEecCCCcccEEEEEeCCCcEEEEe
Q 019349 224 PSTIFSLSFGQSMQFQDILVATSSSGSLHVFS 255 (342)
Q Consensus 224 ~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd 255 (342)
...|.++.|++++. ++++++.|+.+++|+
T Consensus 12 ~~~i~~~~~~~~~~---~~~~~~~d~~~~~~~ 40 (40)
T smart00320 12 TGPVTSVAFSPDGK---YLASASDDGTIKLWD 40 (40)
T ss_pred CCceeEEEECCCCC---EEEEecCCCeEEEcC
Confidence 44699999999988 999999999999996
No 354
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.08 E-value=0.0039 Score=58.35 Aligned_cols=77 Identities=13% Similarity=0.165 Sum_probs=62.6
Q ss_pred CCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEE-EEEEecCCCcccEEEEEeCCCcEEEEecCC
Q 019349 180 APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIF-SLSFGQSMQFQDILVATSSSGSLHVFSPGF 258 (342)
Q Consensus 180 ~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~-~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~ 258 (342)
..|.-+.|+|.-.++|++.++|.++ +..+. -+.+..+..+ ..+++ +++|.|||+ +||+|-.||+|++-|+++
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gell-i~R~n-~qRlwtip~p--~~~v~~sL~W~~DGk---llaVg~kdG~I~L~Dve~ 93 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELL-IHRLN-WQRLWTIPIP--GENVTASLCWRPDGK---LLAVGFKDGTIRLHDVEK 93 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEE-EEEec-cceeEeccCC--CCccceeeeecCCCC---EEEEEecCCeEEEEEccC
Confidence 3467788999999999999999865 77776 7777887632 22344 999999999 999999999999999998
Q ss_pred CCCCC
Q 019349 259 AINQR 263 (342)
Q Consensus 259 ~~~~~ 263 (342)
+....
T Consensus 94 ~~~l~ 98 (665)
T KOG4640|consen 94 GGRLV 98 (665)
T ss_pred CCcee
Confidence 76543
No 355
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.07 E-value=0.0048 Score=58.45 Aligned_cols=115 Identities=16% Similarity=0.176 Sum_probs=82.0
Q ss_pred ceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCcee-EEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCee
Q 019349 136 KGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSH-CEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATK 214 (342)
Q Consensus 136 ~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~-~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~ 214 (342)
....|++.. ..+++.+. ..|.+.+|+-..++.. ....+-.+.+..+.+|++..++|.|+..|.+ -++-+..+..
T Consensus 36 v~lTc~dst--~~~l~~Gs--S~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V-~v~ql~~~~p 110 (726)
T KOG3621|consen 36 VKLTCVDAT--EEYLAMGS--SAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRV-SVFQLNKELP 110 (726)
T ss_pred EEEEEeecC--CceEEEec--ccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceE-EeehhhccCC
Confidence 344555544 55888887 4699999997776543 2333344566777889998888988888875 5887766432
Q ss_pred E--EEeccC--cCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCC
Q 019349 215 S--YSFRRG--TYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGF 258 (342)
Q Consensus 215 ~--~~~~~~--~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~ 258 (342)
- .-+... .+...|++++|++|+. .|.+|...|+|..-.++.
T Consensus 111 ~~~~~~t~~d~~~~~rVTal~Ws~~~~---k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 111 RDLDYVTPCDKSHKCRVTALEWSKNGM---KLYSGDSQGKVVLTELDS 155 (726)
T ss_pred CcceeeccccccCCceEEEEEeccccc---EEeecCCCceEEEEEech
Confidence 1 111111 2356799999999999 999999999999998877
No 356
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.04 E-value=0.26 Score=45.32 Aligned_cols=222 Identities=12% Similarity=0.110 Sum_probs=137.9
Q ss_pred eEEEEEcCCCCEEEEEc--CCcEEEEeCCCCcEEEEEeeCC-EEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCc
Q 019349 10 VFFVSFNQDNSGFALST--KDGFKIFDSSTGRLCYERAVGA-FSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGT 86 (342)
Q Consensus 10 V~~l~fs~d~~~la~g~--~~g~~v~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~ 86 (342)
-..++++++++.+.+.. .+.+.+.|..+.+.......+. -.-+.+.++.+.+.+...+. .++++-+.|..+++
T Consensus 76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~----~~~~vsvid~~t~~ 151 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGN----GNNTVSVIDAATNK 151 (381)
T ss_pred ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEeccc----CCceEEEEeCCCCe
Confidence 45788999998665544 4668999977766655544332 22345556665665554421 26899999999999
Q ss_pred EEEEEecCCceEEEEEcCCe--EEEEE--CCeEEEEECCCCceee-E----EeCCCCCceEEEEeeCCCccEEEEeCCCC
Q 019349 87 ALRELNFLTSILAVRLNKKR--LVIVL--REKTYIYDANTLAILD-T----IDTVPNLKGLCAFSPSLNACFLAVPASTT 157 (342)
Q Consensus 87 ~~~~~~~~~~v~~i~~~~~~--~~~~~--d~~i~i~d~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 157 (342)
.+.+......-..+++.++. ++++. ++.+.+.|.......+ . +.....+ ....+.+++...+++.... .
T Consensus 152 ~~~~~~vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P-~~i~v~~~g~~~yV~~~~~-~ 229 (381)
T COG3391 152 VTATIPVGNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGP-AGIAVDPDGNRVYVANDGS-G 229 (381)
T ss_pred EEEEEecCCCcceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCC-ceEEECCCCCEEEEEeccC-C
Confidence 88885443333788887765 44444 6799999987765553 1 2222222 2334444444444443332 2
Q ss_pred ccEEEEEEccCCceeEE-EecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcC-ceeEEEEEEecC
Q 019349 158 KGSVLVYNVMELHSHCE-IDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTY-PSTIFSLSFGQS 235 (342)
Q Consensus 158 ~g~i~iwd~~~~~~~~~-~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~-~~~v~~l~fs~d 235 (342)
++.+...|..++..... ...-......+.++|+|+.+......+..+.+.|..+......+..+.. ...+..+++.+.
T Consensus 230 ~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 309 (381)
T COG3391 230 SNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISPL 309 (381)
T ss_pred CceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceeccceee
Confidence 47899999998876654 2221114566889999999998855533457999988887776654432 122566677665
Q ss_pred CC
Q 019349 236 MQ 237 (342)
Q Consensus 236 ~~ 237 (342)
..
T Consensus 310 ~~ 311 (381)
T COG3391 310 YD 311 (381)
T ss_pred cc
Confidence 43
No 357
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.02 E-value=0.26 Score=45.24 Aligned_cols=178 Identities=12% Similarity=0.091 Sum_probs=119.8
Q ss_pred CCCeEEEEECCCCcEEEEEecCCceEEEEEcCC--eEEEEE----CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCC
Q 019349 73 SPRRLCLFNTTTGTALRELNFLTSILAVRLNKK--RLVIVL----REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLN 146 (342)
Q Consensus 73 ~d~~i~iwd~~~~~~~~~~~~~~~v~~i~~~~~--~~~~~~----d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (342)
.++.|.+.|..+.+.............+.++++ .++++. ++++.+.|-.+.+...+......+ ..++.+|+
T Consensus 94 ~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P---~~~a~~p~ 170 (381)
T COG3391 94 DSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP---TGVAVDPD 170 (381)
T ss_pred CCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc---ceEEECCC
Confidence 368999999888888887776656667777665 455544 368888888888888776554444 44556666
Q ss_pred ccEEEEeCCCCccEEEEEEccCCceeE-----EEecccCCeeEEEECCCCCEEEEEeCC---CcEEEEEEcCCCeeEEE-
Q 019349 147 ACFLAVPASTTKGSVLVYNVMELHSHC-----EIDAHQAPLAAIVLSSNGMYIATASEQ---GTIIRVFLVSEATKSYS- 217 (342)
Q Consensus 147 ~~~l~~~~~~~~g~i~iwd~~~~~~~~-----~~~~h~~~v~~i~~s~dg~~lat~s~d---g~~irlwd~~~~~~~~~- 217 (342)
+..+..+.. .++.|.+.|........ .+..+. .-..+.++|+|+++...-.. ++ +...|..++.....
T Consensus 171 g~~vyv~~~-~~~~v~vi~~~~~~v~~~~~~~~~~~~~-~P~~i~v~~~g~~~yV~~~~~~~~~-v~~id~~~~~v~~~~ 247 (381)
T COG3391 171 GNKVYVTNS-DDNTVSVIDTSGNSVVRGSVGSLVGVGT-GPAGIAVDPDGNRVYVANDGSGSNN-VLKIDTATGNVTATD 247 (381)
T ss_pred CCeEEEEec-CCCeEEEEeCCCcceeccccccccccCC-CCceEEECCCCCEEEEEeccCCCce-EEEEeCCCceEEEec
Confidence 665555554 58999999977655442 122222 23568899999977666544 35 46889888876654
Q ss_pred eccCcCceeEEEEEEecCCCcccEEEEE-eCCCcEEEEecCCCCC
Q 019349 218 FRRGTYPSTIFSLSFGQSMQFQDILVAT-SSSGSLHVFSPGFAIN 261 (342)
Q Consensus 218 ~~~~~~~~~v~~l~fs~d~~~~~~l~~~-s~dg~i~vwd~~~~~~ 261 (342)
...+ .. ....++++|+++ ++.+. +..+++.+-|..+...
T Consensus 248 ~~~~-~~-~~~~v~~~p~g~---~~yv~~~~~~~V~vid~~~~~v 287 (381)
T COG3391 248 LPVG-SG-APRGVAVDPAGK---AAYVANSQGGTVSVIDGATDRV 287 (381)
T ss_pred cccc-cC-CCCceeECCCCC---EEEEEecCCCeEEEEeCCCCce
Confidence 2222 11 245688999998 66666 4458899999877553
No 358
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.01 E-value=0.085 Score=44.52 Aligned_cols=139 Identities=11% Similarity=0.116 Sum_probs=87.4
Q ss_pred CCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEEEEEecCCceEEEEE-cCCeEEEEE-CCeEEEEECCCCceeeEEeCCC
Q 019349 56 YSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRL-NKKRLVIVL-REKTYIYDANTLAILDTIDTVP 133 (342)
Q Consensus 56 ~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~i~~-~~~~~~~~~-d~~i~i~d~~~~~~~~~~~~~~ 133 (342)
.+.+.+++++. ..+.++-.|.++|..+.+......+.+-+. -.|..++.. .+.+++.+++++.....+....
T Consensus 20 ~dskT~v~igS------Hs~~~~avd~~sG~~~We~ilg~RiE~sa~vvgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~ 93 (354)
T KOG4649|consen 20 NDSKTLVVIGS------HSGIVIAVDPQSGNLIWEAILGVRIECSAIVVGDFVVLGCYSGGLYFLCVKTGSQIWNFVILE 93 (354)
T ss_pred cCCceEEEEec------CCceEEEecCCCCcEEeehhhCceeeeeeEEECCEEEEEEccCcEEEEEecchhheeeeeehh
Confidence 34455555554 578889999999998887766665544332 345544444 8899999999998777775544
Q ss_pred CCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEE
Q 019349 134 NLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTII 204 (342)
Q Consensus 134 ~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~i 204 (342)
....-..+. +++..+.+ ++ .|++....|.++..++...+...+...+=++.|-...|..+...|.++
T Consensus 94 ~vk~~a~~d--~~~glIyc-gs-hd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vl 160 (354)
T KOG4649|consen 94 TVKVRAQCD--FDGGLIYC-GS-HDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVL 160 (354)
T ss_pred hhccceEEc--CCCceEEE-ec-CCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEE
Confidence 322222233 34445544 44 699999999999988877765444333444556223344445556554
No 359
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=96.91 E-value=0.13 Score=47.27 Aligned_cols=185 Identities=17% Similarity=0.198 Sum_probs=96.7
Q ss_pred CCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcEEEEEeeCC----------EEEEEE---cCC----CCeEEEEcCCC
Q 019349 7 SYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAVGA----------FSIVEM---LYS----SSLLAIVGAGE 68 (342)
Q Consensus 7 ~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~~~~~~~~~----------~~~~~~---~~~----~~~~~~~~~g~ 68 (342)
.++|++++.| |=-++|+|.++| +.|.|+....+++..+... +..+++ ... +...+++|.
T Consensus 86 ~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGT-- 162 (395)
T PF08596_consen 86 QGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGT-- 162 (395)
T ss_dssp S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEE--
T ss_pred CCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEe--
Confidence 5789999987 556899999988 6999998778888754332 222222 111 135566666
Q ss_pred CCCCCCCeEEEEECC--C-CcEE----EEE-ecCCceEEEEE-cC-----------------------CeEEEEECCeEE
Q 019349 69 QPSLSPRRLCLFNTT--T-GTAL----REL-NFLTSILAVRL-NK-----------------------KRLVIVLREKTY 116 (342)
Q Consensus 69 ~~~~~d~~i~iwd~~--~-~~~~----~~~-~~~~~v~~i~~-~~-----------------------~~~~~~~d~~i~ 116 (342)
+.+.+.+|.+. . +... ... ...++|..|.. +. ..++++++..++
T Consensus 163 ----n~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~ir 238 (395)
T PF08596_consen 163 ----NSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIR 238 (395)
T ss_dssp ----TTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEE
T ss_pred ----CCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceE
Confidence 46888888764 1 2211 111 23445555542 11 144556689999
Q ss_pred EEECCCCceeeEEeCCCCCceEEEEee---CCCccEEEEeCCCCccEEEEEEccCCceeEEEeccc----CCeeEEEECC
Q 019349 117 IYDANTLAILDTIDTVPNLKGLCAFSP---SLNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQ----APLAAIVLSS 189 (342)
Q Consensus 117 i~d~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~----~~v~~i~~s~ 189 (342)
++...+.+..++.....-....+++.+ ...+..|++-. .+|.|+++.+-..+.+..++.+. ..+....|++
T Consensus 239 v~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~--~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~ 316 (395)
T PF08596_consen 239 VFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLF--NNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISR 316 (395)
T ss_dssp EE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEE--TTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-T
T ss_pred EEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEE--CCCcEEEEECCCchHhhcccCCCccccccccccEECC
Confidence 999988776655432111111222321 12334454444 58999999999988887766432 2344566777
Q ss_pred CCCEEEEEeCC
Q 019349 190 NGMYIATASEQ 200 (342)
Q Consensus 190 dg~~lat~s~d 200 (342)
+|..++-.|..
T Consensus 317 ~Gdi~~~~gps 327 (395)
T PF08596_consen 317 NGDIFYWTGPS 327 (395)
T ss_dssp TS-EEEE-SSS
T ss_pred CCCEEEEeCcc
Confidence 77766655543
No 360
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=96.90 E-value=0.23 Score=42.52 Aligned_cols=156 Identities=11% Similarity=0.125 Sum_probs=88.5
Q ss_pred CceEEEEEcCC--eEEEEEC--CeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCc
Q 019349 95 TSILAVRLNKK--RLVIVLR--EKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELH 170 (342)
Q Consensus 95 ~~v~~i~~~~~--~~~~~~d--~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~ 170 (342)
..+.+++++++ .++++.| +.|..++. +++.++.+.... ....-++..-+++.+++... .++.+.++++....
T Consensus 22 ~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g-~~D~EgI~y~g~~~~vl~~E--r~~~L~~~~~~~~~ 97 (248)
T PF06977_consen 22 DELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDG-FGDYEGITYLGNGRYVLSEE--RDQRLYIFTIDDDT 97 (248)
T ss_dssp S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS--SSEEEEEE-STTEEEEEET--TTTEEEEEEE----
T ss_pred CCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCC-CCCceeEEEECCCEEEEEEc--CCCcEEEEEEeccc
Confidence 36899999874 4666664 47777786 478888876543 22344555566777777665 47889999883321
Q ss_pred ------eeEEEe-----cccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCC---CeeEEEecc------CcCceeEEEE
Q 019349 171 ------SHCEID-----AHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSE---ATKSYSFRR------GTYPSTIFSL 230 (342)
Q Consensus 171 ------~~~~~~-----~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~---~~~~~~~~~------~~~~~~v~~l 230 (342)
....+. .+...+-.++|+|.++.|..+-+..-. +++.+.. ...+..... ......+.++
T Consensus 98 ~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l 176 (248)
T PF06977_consen 98 TSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPK-RLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGL 176 (248)
T ss_dssp TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSE-EEEEEESTT-SS--EEEE-HHHH-HT--SS---EE
T ss_pred cccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCCh-hhEEEccccCccceeeccccccccccceeccccce
Confidence 112222 245668999999988888887776553 5776653 222111110 1112237889
Q ss_pred EEecCCCcccEEEEEeCCCcEEEEecC
Q 019349 231 SFGQSMQFQDILVATSSSGSLHVFSPG 257 (342)
Q Consensus 231 ~fs~d~~~~~~l~~~s~dg~i~vwd~~ 257 (342)
+++|... ++++.+..+..|.++|.+
T Consensus 177 ~~~p~t~--~lliLS~es~~l~~~d~~ 201 (248)
T PF06977_consen 177 SYDPRTG--HLLILSDESRLLLELDRQ 201 (248)
T ss_dssp EEETTTT--EEEEEETTTTEEEEE-TT
T ss_pred EEcCCCC--eEEEEECCCCeEEEECCC
Confidence 9999865 377777788889999844
No 361
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.72 E-value=0.17 Score=43.32 Aligned_cols=153 Identities=14% Similarity=0.135 Sum_probs=96.0
Q ss_pred CCCcEEEEEecCCceEEEEEcCCe-EEEEE----CCeEEEEECCCCceeeEEeCCCCC--ceEEEEeeCCCccEEEEeCC
Q 019349 83 TTGTALRELNFLTSILAVRLNKKR-LVIVL----REKTYIYDANTLAILDTIDTVPNL--KGLCAFSPSLNACFLAVPAS 155 (342)
Q Consensus 83 ~~~~~~~~~~~~~~v~~i~~~~~~-~~~~~----d~~i~i~d~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~ 155 (342)
..|+++.....+..-.+|.++|.. ..++. .-...++|.++.+....+....+. .+--++ ++++.+|...-.
T Consensus 56 eaGk~v~~~~lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvf--s~dG~~LYATEn 133 (366)
T COG3490 56 EAGKIVFATALPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVF--SPDGRLLYATEN 133 (366)
T ss_pred cCCceeeeeecccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeeccccc--CCCCcEEEeecC
Confidence 357777777777777788887753 22222 346789999888777666443332 222233 456667765432
Q ss_pred C---CccEEEEEEccCC-ceeEEEecccCCeeEEEECCCCCEEEEEeCC-------CcE----------EEEEEcCCCee
Q 019349 156 T---TKGSVLVYNVMEL-HSHCEIDAHQAPLAAIVLSSNGMYIATASEQ-------GTI----------IRVFLVSEATK 214 (342)
Q Consensus 156 ~---~~g~i~iwd~~~~-~~~~~~~~h~~~v~~i~~s~dg~~lat~s~d-------g~~----------irlwd~~~~~~ 214 (342)
+ .-|.|-|||.+.+ +.+..+..|.-.-..+.+.+||+.|+.+.-- |+. +-+-|..+|++
T Consensus 134 dfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~l 213 (366)
T COG3490 134 DFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNL 213 (366)
T ss_pred CCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccch
Confidence 2 3488999998754 4567788888778889999999999987520 110 12445556655
Q ss_pred EEEeccC--cCceeEEEEEEecCCC
Q 019349 215 SYSFRRG--TYPSTIFSLSFGQSMQ 237 (342)
Q Consensus 215 ~~~~~~~--~~~~~v~~l~fs~d~~ 237 (342)
+.+.... .+.-.|..|+..+|++
T Consensus 214 iekh~Lp~~l~~lSiRHld~g~dgt 238 (366)
T COG3490 214 IEKHTLPASLRQLSIRHLDIGRDGT 238 (366)
T ss_pred hhhccCchhhhhcceeeeeeCCCCc
Confidence 5432211 2223477888888887
No 362
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.68 E-value=0.008 Score=36.77 Aligned_cols=31 Identities=19% Similarity=0.450 Sum_probs=28.3
Q ss_pred ceeEEEEEEecCCCcccEEEEEeCCCcEEEEecC
Q 019349 224 PSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPG 257 (342)
Q Consensus 224 ~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~ 257 (342)
+.+|.+++|+|... +||.++.+|.|.+|.+.
T Consensus 11 ~~~v~~~~w~P~md---LiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMD---LIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCC---EEEEEECCCeEEEEECC
Confidence 45699999999998 99999999999999984
No 363
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=96.65 E-value=0.25 Score=45.93 Aligned_cols=172 Identities=16% Similarity=0.074 Sum_probs=90.6
Q ss_pred CeEEEEECCCCcEEEEEecCC-ceEEEEEcCCeEEE--E-E---C-CeEEEEECCCCceeeEEeCCCCCceEEEEeeCCC
Q 019349 75 RRLCLFNTTTGTALRELNFLT-SILAVRLNKKRLVI--V-L---R-EKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLN 146 (342)
Q Consensus 75 ~~i~iwd~~~~~~~~~~~~~~-~v~~i~~~~~~~~~--~-~---d-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (342)
..+.+-|.. |.....+.... .+..-.|.++..-+ . . . ..++++++.+++.........+ ..+-.++||
T Consensus 173 ~~l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~---~~~P~fspD 248 (425)
T COG0823 173 YELALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGN---NGAPAFSPD 248 (425)
T ss_pred ceEEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCc---cCCccCCCC
Confidence 445555543 33333333222 34444555553222 1 1 2 3699999988765555442222 223455677
Q ss_pred ccEEEEeCCCCccE--EEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEE--EcCCCeeEEEeccCc
Q 019349 147 ACFLAVPASTTKGS--VLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVF--LVSEATKSYSFRRGT 222 (342)
Q Consensus 147 ~~~l~~~~~~~~g~--i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlw--d~~~~~~~~~~~~~~ 222 (342)
+..++++.. .+|. |.++|+......+ +..-.+.-..=.|+|||++|+-.|..+..-+|| |...++. ..+....
T Consensus 249 G~~l~f~~~-rdg~~~iy~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~ 325 (425)
T COG0823 249 GSKLAFSSS-RDGSPDIYLMDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSG 325 (425)
T ss_pred CCEEEEEEC-CCCCccEEEEcCCCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccC
Confidence 788887765 4565 5556776665332 332222222346999999999887654322444 4444432 3322221
Q ss_pred CceeEEEEEEecCCCcccEEEEEeC-CCc--EEEEecCC
Q 019349 223 YPSTIFSLSFGQSMQFQDILVATSS-SGS--LHVFSPGF 258 (342)
Q Consensus 223 ~~~~v~~l~fs~d~~~~~~l~~~s~-dg~--i~vwd~~~ 258 (342)
... ..-.+||||+ +|+..+. +|. |.+.|+..
T Consensus 326 ~~~--~~p~~SpdG~---~i~~~~~~~g~~~i~~~~~~~ 359 (425)
T COG0823 326 GGN--SNPVWSPDGD---KIVFESSSGGQWDIDKNDLAS 359 (425)
T ss_pred CCC--cCccCCCCCC---EEEEEeccCCceeeEEeccCC
Confidence 111 1567899999 7777764 344 44444443
No 364
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.63 E-value=0.0067 Score=37.12 Aligned_cols=35 Identities=14% Similarity=0.230 Sum_probs=29.9
Q ss_pred cCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeE
Q 019349 179 QAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKS 215 (342)
Q Consensus 179 ~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~ 215 (342)
..+|.+++|+|...+||.++.||.+ .++.+ +++.+
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v-~v~Rl-~~qri 45 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEV-LVYRL-NWQRI 45 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeE-EEEEC-CCcCc
Confidence 4569999999999999999999985 59998 66654
No 365
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=96.59 E-value=0.00092 Score=62.48 Aligned_cols=197 Identities=15% Similarity=0.242 Sum_probs=110.9
Q ss_pred CCEEEEEEcCCCC-eEEEEcCCCCCCCCCCeEEEEECCCCcEE-EEEe--cCCceEEEEEcCC---eEEEEE-----CCe
Q 019349 47 GAFSIVEMLYSSS-LLAIVGAGEQPSLSPRRLCLFNTTTGTAL-RELN--FLTSILAVRLNKK---RLVIVL-----REK 114 (342)
Q Consensus 47 ~~~~~~~~~~~~~-~~~~~~~g~~~~~~d~~i~iwd~~~~~~~-~~~~--~~~~v~~i~~~~~---~~~~~~-----d~~ 114 (342)
..+.+++..+..+ .+..+|. .+|.|-+-..+...-- .++. +....++++|++- .+++.. |..
T Consensus 57 qy~kcva~~y~~d~cIlavG~------atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~ 130 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGS------ATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSS 130 (783)
T ss_pred CCceeehhhcCCchhhhhhcc------ccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCC
Confidence 4455666555554 3333332 4678887776543322 2221 2236677787653 233332 457
Q ss_pred EEEEECCCC--ceeeE--EeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCC-ceeEEEecccCCeeEEEECC
Q 019349 115 TYIYDANTL--AILDT--IDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMEL-HSHCEIDAHQAPLAAIVLSS 189 (342)
Q Consensus 115 i~i~d~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~-~~~~~~~~h~~~v~~i~~s~ 189 (342)
+.|||+.++ .+..+ +.+ ....+...+++..+...+. +|. ....+.++|++.. .....+ .+..+..+.++|
T Consensus 131 ~~Iwdi~s~ltvPke~~~fs~-~~l~gqns~cwlrd~klvl-aGm-~sr~~~ifdlRqs~~~~~sv--nTk~vqG~tVdp 205 (783)
T KOG1008|consen 131 LKIWDINSLLTVPKESPLFSS-STLDGQNSVCWLRDTKLVL-AGM-TSRSVHIFDLRQSLDSVSSV--NTKYVQGITVDP 205 (783)
T ss_pred ccceecccccCCCcccccccc-ccccCccccccccCcchhh-ccc-ccchhhhhhhhhhhhhhhhh--hhhhcccceecC
Confidence 999999875 22111 211 1112233556655544444 443 4678999999832 222222 234566678888
Q ss_pred -CCCEEEEEeCCCcEEEEEEc-CCCe-eEEEeccC--cCceeEEEEEEecCCCcccEEEEEeCC-CcEEEEecCC
Q 019349 190 -NGMYIATASEQGTIIRVFLV-SEAT-KSYSFRRG--TYPSTIFSLSFGQSMQFQDILVATSSS-GSLHVFSPGF 258 (342)
Q Consensus 190 -dg~~lat~s~dg~~irlwd~-~~~~-~~~~~~~~--~~~~~v~~l~fs~d~~~~~~l~~~s~d-g~i~vwd~~~ 258 (342)
.++++++-+ ||. |-+||. ++-+ .+..+... ..+..+..++|.|...+ .|++.+.| ++|+++|+..
T Consensus 206 ~~~nY~cs~~-dg~-iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtg--lla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 206 FSPNYFCSNS-DGD-IAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTG--LLAVLSRDSITIRLYDICV 276 (783)
T ss_pred CCCCceeccc-cCc-eeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcc--hhhhhccCcceEEEecccc
Confidence 889999887 665 579994 3222 11111111 11234889999998763 77777665 6899999854
No 366
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=96.59 E-value=0.39 Score=41.07 Aligned_cols=193 Identities=13% Similarity=0.114 Sum_probs=101.3
Q ss_pred CCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEEEEEecCC--ceEEEEEcCCeEEE-EE--CCeEEEEECC
Q 019349 47 GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLT--SILAVRLNKKRLVI-VL--REKTYIYDAN 121 (342)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~~~~~~--~v~~i~~~~~~~~~-~~--d~~i~i~d~~ 121 (342)
..+.-+.+.++.+.++.+.. .+..|...+. +|+.+..+.+.+ ..-+|+.-.+..++ .. ++.+.++++.
T Consensus 22 ~e~SGLTy~pd~~tLfaV~d------~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~ 94 (248)
T PF06977_consen 22 DELSGLTYNPDTGTLFAVQD------EPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID 94 (248)
T ss_dssp S-EEEEEEETTTTEEEEEET------TTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred CCccccEEcCCCCeEEEEEC------CCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence 34667788888888887776 3778888886 588888887754 67788876655544 44 5689988884
Q ss_pred CC------ceeeEEe--CC-CCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccC---CceeE--EE------ecccCC
Q 019349 122 TL------AILDTID--TV-PNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVME---LHSHC--EI------DAHQAP 181 (342)
Q Consensus 122 ~~------~~~~~~~--~~-~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~---~~~~~--~~------~~h~~~ 181 (342)
.. .....+. .. .+..++-.+++++.+..|..+- ...-..+|.+.. ...+. .. ..+...
T Consensus 95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~k--E~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 172 (248)
T PF06977_consen 95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAK--ERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRD 172 (248)
T ss_dssp ---TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEE--ESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS-
T ss_pred ccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEe--CCCChhhEEEccccCccceeeccccccccccceecc
Confidence 32 1122232 22 2345677788877654444442 233344554432 11111 11 123456
Q ss_pred eeEEEECCCC-CEEEEEeCCCcEEEEEEcCCCeeEEEe--ccCcCc-----eeEEEEEEecCCCcccEEEEEeCCCcEEE
Q 019349 182 LAAIVLSSNG-MYIATASEQGTIIRVFLVSEATKSYSF--RRGTYP-----STIFSLSFGQSMQFQDILVATSSSGSLHV 253 (342)
Q Consensus 182 v~~i~~s~dg-~~lat~s~dg~~irlwd~~~~~~~~~~--~~~~~~-----~~v~~l~fs~d~~~~~~l~~~s~dg~i~v 253 (342)
+.+++++|.. ++++-+.+.. .+-.+| .+|+.+..+ ..+.+. ...-.|+|.++|+ |...|+-+..++
T Consensus 173 ~S~l~~~p~t~~lliLS~es~-~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~----LYIvsEpNlfy~ 246 (248)
T PF06977_consen 173 LSGLSYDPRTGHLLILSDESR-LLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGN----LYIVSEPNLFYR 246 (248)
T ss_dssp --EEEEETTTTEEEEEETTTT-EEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT------EEEEETTTEEEE
T ss_pred ccceEEcCCCCeEEEEECCCC-eEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCC----EEEEcCCceEEE
Confidence 8899999954 5555555554 455888 567765544 322111 1367899999997 666677777776
Q ss_pred E
Q 019349 254 F 254 (342)
Q Consensus 254 w 254 (342)
|
T Consensus 247 f 247 (248)
T PF06977_consen 247 F 247 (248)
T ss_dssp E
T ss_pred e
Confidence 6
No 367
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=96.57 E-value=0.49 Score=41.93 Aligned_cols=217 Identities=14% Similarity=0.118 Sum_probs=115.6
Q ss_pred EEcCCCCEEEEEc-CC-cEEEEeCCCCcEEEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEEEEE
Q 019349 14 SFNQDNSGFALST-KD-GFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALREL 91 (342)
Q Consensus 14 ~fs~d~~~la~g~-~~-g~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~~ 91 (342)
.|.++...|.-.. .. .+.-|+..+++.......+.+...........++.+ +..+.+++.+++..+..+
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~~p~~~~~~~~~d~~g~Lv~~---------~~g~~~~~~~~~~~~t~~ 101 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKKRVFPSPGGFSSGALIDAGGRLIAC---------EHGVRLLDPDTGGKITLL 101 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCceEEEECCCCcccceeecCCCeEEEE---------ccccEEEeccCCceeEEe
Confidence 3556666554332 22 256666666644433333444433333334444443 345677777666553332
Q ss_pred ec------CCceEEEEEcCCeEEEEECCe------------EEEEECC-CCceeeEEeCCCCCceEEEEeeCCCccEEEE
Q 019349 92 NF------LTSILAVRLNKKRLVIVLREK------------TYIYDAN-TLAILDTIDTVPNLKGLCAFSPSLNACFLAV 152 (342)
Q Consensus 92 ~~------~~~v~~i~~~~~~~~~~~d~~------------i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 152 (342)
.. .....++.+.+++.+.+++-. -.+|-+. .+...+.+..+ ......++++||++.+..
T Consensus 102 ~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~--~~~~NGla~SpDg~tly~ 179 (307)
T COG3386 102 AEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDD--LTIPNGLAFSPDGKTLYV 179 (307)
T ss_pred ccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCc--EEecCceEECCCCCEEEE
Confidence 21 123456666666554444211 1233333 33333333221 112235677788877777
Q ss_pred eCCCCccEEEEEEccC--Cc----e-eEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCce
Q 019349 153 PASTTKGSVLVYNVME--LH----S-HCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPS 225 (342)
Q Consensus 153 ~~~~~~g~i~iwd~~~--~~----~-~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~ 225 (342)
+.. ..+.|.-|++.. +. . ...+..+.+..-.++...+|++-+.+-..|..|..|+.. |+++.++.-.. .
T Consensus 180 aDT-~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~--~ 255 (307)
T COG3386 180 ADT-PANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPV--K 255 (307)
T ss_pred EeC-CCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCC--C
Confidence 764 468888887752 21 1 122223455667788899999886665555335789987 88888775432 3
Q ss_pred eEEEEEEe-cCCCcccEEEEEeCC
Q 019349 226 TIFSLSFG-QSMQFQDILVATSSS 248 (342)
Q Consensus 226 ~v~~l~fs-~d~~~~~~l~~~s~d 248 (342)
.+.+++|- |+.+ .|.+.+..
T Consensus 256 ~~t~~~FgG~~~~---~L~iTs~~ 276 (307)
T COG3386 256 RPTNPAFGGPDLN---TLYITSAR 276 (307)
T ss_pred CCccceEeCCCcC---EEEEEecC
Confidence 47788885 4444 55555544
No 368
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.48 E-value=0.12 Score=42.27 Aligned_cols=94 Identities=14% Similarity=0.169 Sum_probs=58.3
Q ss_pred EEEEeCCCCcEEEEEeeCCEEEE--EEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEEEEEecCCceEEEEEcCCeE
Q 019349 30 FKIFDSSTGRLCYERAVGAFSIV--EMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKRL 107 (342)
Q Consensus 30 ~~v~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~i~~~~~~~ 107 (342)
+++||+.+++.+++....+-... .+....+.+....- .++.-..+|..+-+++..+.+++.=.+++-..+.+
T Consensus 70 ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw------~egvaf~~d~~t~~~lg~~~y~GeGWgLt~d~~~L 143 (262)
T COG3823 70 IRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTW------KEGVAFKYDADTLEELGRFSYEGEGWGLTSDDKNL 143 (262)
T ss_pred eEEEeccCceEEEEeecCCccccccceeeccceEEEEEe------ccceeEEEChHHhhhhcccccCCcceeeecCCcce
Confidence 69999999998887654321100 11122344444443 57788889999999999998888888888777765
Q ss_pred EEEE-CCeEEEEECCCCceeeEE
Q 019349 108 VIVL-REKTYIYDANTLAILDTI 129 (342)
Q Consensus 108 ~~~~-d~~i~i~d~~~~~~~~~~ 129 (342)
+... ..+++.-|-++...+.++
T Consensus 144 imsdGsatL~frdP~tfa~~~~v 166 (262)
T COG3823 144 IMSDGSATLQFRDPKTFAELDTV 166 (262)
T ss_pred EeeCCceEEEecCHHHhhhcceE
Confidence 4443 224554455544433333
No 369
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=96.46 E-value=1.1 Score=44.80 Aligned_cols=173 Identities=17% Similarity=0.157 Sum_probs=108.5
Q ss_pred CeEEEEECCCCcEEEEEecCC-----ceEEEEEcCC---eEEEEE-----------CCeEEEEECCCCceeeEEeCCCCC
Q 019349 75 RRLCLFNTTTGTALRELNFLT-----SILAVRLNKK---RLVIVL-----------REKTYIYDANTLAILDTIDTVPNL 135 (342)
Q Consensus 75 ~~i~iwd~~~~~~~~~~~~~~-----~v~~i~~~~~---~~~~~~-----------d~~i~i~d~~~~~~~~~~~~~~~~ 135 (342)
.-++++|-.+-+.+...++.. ++.+..|..+ .+++++ .|.|.+|.+..++.++.+....-.
T Consensus 750 s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~ 829 (1096)
T KOG1897|consen 750 SFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVK 829 (1096)
T ss_pred EEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeec
Confidence 347888888877766655532 4455557554 334433 367888888764333333211111
Q ss_pred ceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEE--EEcCCCe
Q 019349 136 KGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRV--FLVSEAT 213 (342)
Q Consensus 136 ~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irl--wd~~~~~ 213 (342)
..+.++..- ++.++|.-+ ..|++|++.+.+.++.-..|..++..+.+.-.|..+|.|..-+++ .+ |+-..|.
T Consensus 830 Gav~aL~~f-ngkllA~In----~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Si-tll~y~~~eg~ 903 (1096)
T KOG1897|consen 830 GAVYALVEF-NGKLLAGIN----QSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSI-TLLQYKGDEGN 903 (1096)
T ss_pred cceeehhhh-CCeEEEecC----cEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceE-EEEEEeccCCc
Confidence 223333332 456777554 679999999987777666788899999999999999999766653 33 3333333
Q ss_pred eEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCC
Q 019349 214 KSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGF 258 (342)
Q Consensus 214 ~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~ 258 (342)
. .++.+..++..++++.+-.+.. ++.+..+|.+.+-..++
T Consensus 904 f-~evArD~~p~Wmtaveil~~d~----ylgae~~gNlf~v~~d~ 943 (1096)
T KOG1897|consen 904 F-EEVARDYNPNWMTAVEILDDDT----YLGAENSGNLFTVRKDS 943 (1096)
T ss_pred e-EEeehhhCccceeeEEEecCce----EEeecccccEEEEEecC
Confidence 3 4444444455577788766664 66677778877776553
No 370
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.45 E-value=0.26 Score=45.79 Aligned_cols=135 Identities=15% Similarity=0.200 Sum_probs=83.3
Q ss_pred CeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEE----eCCCCccEEEEEEccCC-c-eeEEEecc----cCCe
Q 019349 113 EKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAV----PASTTKGSVLVYNVMEL-H-SHCEIDAH----QAPL 182 (342)
Q Consensus 113 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~g~i~iwd~~~~-~-~~~~~~~h----~~~v 182 (342)
+.++=.|++.|+.+.++..+.. ..++.+.+...+..|.. .|- .+..|.-||.+-. . .+..-++| ....
T Consensus 356 ~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGL-s~n~vfriDpRv~~~~kl~~~q~kqy~~k~nF 433 (644)
T KOG2395|consen 356 DKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGL-SDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNF 433 (644)
T ss_pred CcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEee-cCCceEEecccccCcceeeeeecccccccccc
Confidence 4677778888888888776554 33444444332222210 122 3677999998632 2 22222333 3456
Q ss_pred eEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecC
Q 019349 183 AAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPG 257 (342)
Q Consensus 183 ~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~ 257 (342)
.|.+-..+| ++|.||.+|. |||||- .+...++.-.+ -..+|..+..+.||+ +|++++ +.++-+-++.
T Consensus 434 sc~aTT~sG-~IvvgS~~Gd-IRLYdr-i~~~AKTAlPg-LG~~I~hVdvtadGK---wil~Tc-~tyLlLi~t~ 500 (644)
T KOG2395|consen 434 SCFATTESG-YIVVGSLKGD-IRLYDR-IGRRAKTALPG-LGDAIKHVDVTADGK---WILATC-KTYLLLIDTL 500 (644)
T ss_pred ceeeecCCc-eEEEeecCCc-EEeehh-hhhhhhhcccc-cCCceeeEEeeccCc---EEEEec-ccEEEEEEEe
Confidence 777776665 7999999998 699997 55443333222 245689999999999 776555 4577777754
No 371
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=96.44 E-value=0.064 Score=49.29 Aligned_cols=85 Identities=21% Similarity=0.217 Sum_probs=58.4
Q ss_pred eeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccC------cCceeEEEEEEe-----cCCCcc
Q 019349 171 SHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRG------TYPSTIFSLSFG-----QSMQFQ 239 (342)
Q Consensus 171 ~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~------~~~~~v~~l~fs-----~d~~~~ 239 (342)
+...+....++|++++.| |=-++|.|.++|++ -|.|++....++.-.-. .....++++.|+ .|+..+
T Consensus 78 P~~l~~~~~g~vtal~~S-~iGFvaigy~~G~l-~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySS 155 (395)
T PF08596_consen 78 PLTLLDAKQGPVTALKNS-DIGFVAIGYESGSL-VVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSS 155 (395)
T ss_dssp EEEEE---S-SEEEEEE--BTSEEEEEETTSEE-EEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEE
T ss_pred chhheeccCCcEeEEecC-CCcEEEEEecCCcE-EEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccc
Confidence 445556678999999997 55699999999986 59999988887763211 123347788886 344334
Q ss_pred cEEEEEeCCCcEEEEecC
Q 019349 240 DILVATSSSGSLHVFSPG 257 (342)
Q Consensus 240 ~~l~~~s~dg~i~vwd~~ 257 (342)
..|++|.+.|.+.+|.+-
T Consensus 156 i~L~vGTn~G~v~~fkIl 173 (395)
T PF08596_consen 156 ICLLVGTNSGNVLTFKIL 173 (395)
T ss_dssp EEEEEEETTSEEEEEEEE
T ss_pred eEEEEEeCCCCEEEEEEe
Confidence 589999999999999884
No 372
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=96.43 E-value=0.95 Score=43.53 Aligned_cols=230 Identities=11% Similarity=0.134 Sum_probs=124.3
Q ss_pred EEEEEcCCc-EEEEeCCCCcEEEEEeeCCE----EEE--EEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEEEEEec
Q 019349 21 GFALSTKDG-FKIFDSSTGRLCYERAVGAF----SIV--EMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNF 93 (342)
Q Consensus 21 ~la~g~~~g-~~v~d~~~~~~~~~~~~~~~----~~~--~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~~~~ 93 (342)
.+.+++.++ +.-+|..+|+++.+...... ... -... .+.+++...+.. ...++.|.-+|.++|+.+..+..
T Consensus 122 ~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~-~g~Vivg~~~~~-~~~~G~v~AlD~~TG~~lW~~~~ 199 (527)
T TIGR03075 122 KVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVV-KGKVITGISGGE-FGVRGYVTAYDAKTGKLVWRRYT 199 (527)
T ss_pred EEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEE-CCEEEEeecccc-cCCCcEEEEEECCCCceeEeccC
Confidence 455555554 57788889988765432111 110 0111 223333221100 01367899999999998876543
Q ss_pred CC--------------------------------ce-EEEEEcC--CeEEEEE-------------CC----eEEEEECC
Q 019349 94 LT--------------------------------SI-LAVRLNK--KRLVIVL-------------RE----KTYIYDAN 121 (342)
Q Consensus 94 ~~--------------------------------~v-~~i~~~~--~~~~~~~-------------d~----~i~i~d~~ 121 (342)
.. .+ ..+.+++ +.+++.+ |+ .|.-.|++
T Consensus 200 ~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~ 279 (527)
T TIGR03075 200 VPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPD 279 (527)
T ss_pred cCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccc
Confidence 11 01 0123333 2334333 12 56777888
Q ss_pred CCceeeEEeCCCCC-------ceEEEEeeCCCcc---EEEEeCCCCccEEEEEEccCCceeEE--------Ee---c-cc
Q 019349 122 TLAILDTIDTVPNL-------KGLCAFSPSLNAC---FLAVPASTTKGSVLVYNVMELHSHCE--------ID---A-HQ 179 (342)
Q Consensus 122 ~~~~~~~~~~~~~~-------~~~~~~~~~~~~~---~l~~~~~~~~g~i~iwd~~~~~~~~~--------~~---~-h~ 179 (342)
+++....++..++. .....+....++. .++.+. .+|.+.+.|..+++.+.. +. . ..
T Consensus 280 TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~--K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~~ 357 (527)
T TIGR03075 280 TGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHAD--RNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLKT 357 (527)
T ss_pred cCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeC--CCceEEEEECCCCceeccccccCCcccccccCCCC
Confidence 99888777654432 1112222212333 455555 689999999999987521 10 0 00
Q ss_pred -CCe----------------------------eEEEECCCCCEEEEEeCC------------------------------
Q 019349 180 -APL----------------------------AAIVLSSNGMYIATASEQ------------------------------ 200 (342)
Q Consensus 180 -~~v----------------------------~~i~~s~dg~~lat~s~d------------------------------ 200 (342)
.++ ..++++|+..++.....+
T Consensus 358 g~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~ 437 (527)
T TIGR03075 358 GRPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPD 437 (527)
T ss_pred CCCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCCC
Confidence 000 125677766555444332
Q ss_pred ---CcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCC
Q 019349 201 ---GTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAIN 261 (342)
Q Consensus 201 ---g~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~ 261 (342)
|. +.-+|+.+|+.+.+.+... +. ..+. +.-.+. ++..++.+|.++.+|.++++.
T Consensus 438 ~~~g~-l~AiD~~tGk~~W~~~~~~-p~-~~~~-l~t~g~---lvf~g~~~G~l~a~D~~TGe~ 494 (527)
T TIGR03075 438 DHMGS-LIAWDPITGKIVWEHKEDF-PL-WGGV-LATAGD---LVFYGTLEGYFKAFDAKTGEE 494 (527)
T ss_pred CCcee-EEEEeCCCCceeeEecCCC-CC-CCcc-eEECCc---EEEEECCCCeEEEEECCCCCE
Confidence 33 4578989998877665332 10 1111 122444 677788899999999999876
No 373
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.38 E-value=0.63 Score=41.05 Aligned_cols=228 Identities=15% Similarity=0.175 Sum_probs=95.2
Q ss_pred CCCCCeEEEEEcCCCCEEEEEcCCcEEEEeCCCCc---EEEEEeeC--CEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEE
Q 019349 5 SSSYPVFFVSFNQDNSGFALSTKDGFKIFDSSTGR---LCYERAVG--AFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCL 79 (342)
Q Consensus 5 ~~~~~V~~l~fs~d~~~la~g~~~g~~v~d~~~~~---~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~i 79 (342)
+.+.++..|.|..+..-.++|....+ +-..+-|+ ........ ......+.+..+...+++. .+ +.+
T Consensus 14 ~t~~~l~dV~F~d~~~G~~VG~~g~i-l~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~~g~ivG~-------~g-~ll 84 (302)
T PF14870_consen 14 PTDKPLLDVAFVDPNHGWAVGAYGTI-LKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGNEGWIVGE-------PG-LLL 84 (302)
T ss_dssp S-SS-EEEEEESSSS-EEEEETTTEE-EEESSTTSS-EE-----S-----EEEEEEEETTEEEEEEE-------TT-EEE
T ss_pred CCCCceEEEEEecCCEEEEEecCCEE-EEECCCCccccccccCCCccceeeEEEEEecCCceEEEcC-------Cc-eEE
Confidence 45678999999976666788875432 22333331 11111111 1222233333444444443 23 223
Q ss_pred EECCCCcEEEEEe----cCCceEEEE-EcCCeEEEEECCeEEEEECCCC-ceeeEEeCCCCCceEEEEeeCCCccEEEEe
Q 019349 80 FNTTTGTALRELN----FLTSILAVR-LNKKRLVIVLREKTYIYDANTL-AILDTIDTVPNLKGLCAFSPSLNACFLAVP 153 (342)
Q Consensus 80 wd~~~~~~~~~~~----~~~~v~~i~-~~~~~~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 153 (342)
--...|+.=..+. .+.....+. +.+....++.+. -.||-..++ +.=+.+.. .....+..+...+++.+++++
T Consensus 85 ~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~~~~-G~iy~T~DgG~tW~~~~~-~~~gs~~~~~r~~dG~~vavs 162 (302)
T PF14870_consen 85 HTTDGGKTWERVPLSSKLPGSPFGITALGDGSAELAGDR-GAIYRTTDGGKTWQAVVS-ETSGSINDITRSSDGRYVAVS 162 (302)
T ss_dssp EESSTTSS-EE----TT-SS-EEEEEEEETTEEEEEETT---EEEESSTTSSEEEEE--S----EEEEEE-TTS-EEEEE
T ss_pred EecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEEEcCC-CcEEEeCCCCCCeeEccc-CCcceeEeEEECCCCcEEEEE
Confidence 2233343222222 233333333 344444444432 234444333 22122221 222446667778899999887
Q ss_pred CCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEE-cCCCeeEEE--eccCcCceeEEEE
Q 019349 154 ASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFL-VSEATKSYS--FRRGTYPSTIFSL 230 (342)
Q Consensus 154 ~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd-~~~~~~~~~--~~~~~~~~~v~~l 230 (342)
.. ..-..-||-....-...-..-...|.+|.|+|++.+.+.+ ..|. ++.=+ ....+...+ .......-.+.+|
T Consensus 163 ~~--G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~-~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~ 238 (302)
T PF14870_consen 163 SR--GNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQ-IQFSDDPDDGETWSEPIIPIKTNGYGILDL 238 (302)
T ss_dssp TT--SSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTE-EEEEE-TTEEEEE---B-TTSS--S-EEEE
T ss_pred Cc--ccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcE-EEEccCCCCccccccccCCcccCceeeEEE
Confidence 63 3334567754321111112235689999999998876655 5564 55544 122222111 1110111238899
Q ss_pred EEecCCCcccEEEEEeCCCcE
Q 019349 231 SFGQSMQFQDILVATSSSGSL 251 (342)
Q Consensus 231 ~fs~d~~~~~~l~~~s~dg~i 251 (342)
+|.+++. ..|+|+ .|++
T Consensus 239 a~~~~~~---~wa~gg-~G~l 255 (302)
T PF14870_consen 239 AYRPPNE---IWAVGG-SGTL 255 (302)
T ss_dssp EESSSS----EEEEES-TT-E
T ss_pred EecCCCC---EEEEeC-CccE
Confidence 9999987 565554 4554
No 374
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=96.37 E-value=0.00048 Score=64.32 Aligned_cols=155 Identities=17% Similarity=0.239 Sum_probs=88.7
Q ss_pred CCCCCCeEEEEEcC-CCCEEEEEcCC----c-EEEEeCCCC------cEEEEE-eeCCEEEEEEcCCCCeEEEEcCCCCC
Q 019349 4 QSSSYPVFFVSFNQ-DNSGFALSTKD----G-FKIFDSSTG------RLCYER-AVGAFSIVEMLYSSSLLAIVGAGEQP 70 (342)
Q Consensus 4 ~~~~~~V~~l~fs~-d~~~la~g~~~----g-~~v~d~~~~------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~ 70 (342)
++...+.++++|++ |-+.||+|-++ . +.|||+.++ ...+.. ...+...+++. ....++++|.
T Consensus 99 p~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwl-rd~klvlaGm---- 173 (783)
T KOG1008|consen 99 PGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWL-RDTKLVLAGM---- 173 (783)
T ss_pred ccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccc-cCcchhhccc----
Confidence 34455788999998 55678888653 2 699998876 112222 22344456666 3344555554
Q ss_pred CCCCCeEEEEECCCCcEE-EEEecCCceEEEEEcC---CeEEEEECCeEEEEEC-CCC-ceeeEEeCCCC--CceEEEEe
Q 019349 71 SLSPRRLCLFNTTTGTAL-RELNFLTSILAVRLNK---KRLVIVLREKTYIYDA-NTL-AILDTIDTVPN--LKGLCAFS 142 (342)
Q Consensus 71 ~~~d~~i~iwd~~~~~~~-~~~~~~~~v~~i~~~~---~~~~~~~d~~i~i~d~-~~~-~~~~~~~~~~~--~~~~~~~~ 142 (342)
..+.+++.|++..... .++. ...+.++.+.| +++....|+.|.+||. .+- .++..+....+ +..+.+++
T Consensus 174 --~sr~~~ifdlRqs~~~~~svn-Tk~vqG~tVdp~~~nY~cs~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~a 250 (783)
T KOG1008|consen 174 --TSRSVHIFDLRQSLDSVSSVN-TKYVQGITVDPFSPNYFCSNSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALA 250 (783)
T ss_pred --ccchhhhhhhhhhhhhhhhhh-hhhcccceecCCCCCceeccccCceeeccchhhhccHHHHHhhCCCCcccceeeEE
Confidence 4678999998743221 1111 22455566554 5555555999999993 222 22333322222 33455555
Q ss_pred eCCCc-cEEEEeCCCCccEEEEEEcc
Q 019349 143 PSLNA-CFLAVPASTTKGSVLVYNVM 167 (342)
Q Consensus 143 ~~~~~-~~l~~~~~~~~g~i~iwd~~ 167 (342)
+.|.. ..+++..+ ..++|+++|+.
T Consensus 251 ycPtrtglla~l~R-dS~tIrlydi~ 275 (783)
T KOG1008|consen 251 YCPTRTGLLAVLSR-DSITIRLYDIC 275 (783)
T ss_pred eccCCcchhhhhcc-CcceEEEeccc
Confidence 55532 24455555 68999999984
No 375
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=96.33 E-value=0.019 Score=54.61 Aligned_cols=124 Identities=11% Similarity=0.057 Sum_probs=80.7
Q ss_pred ccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecC
Q 019349 178 HQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPG 257 (342)
Q Consensus 178 h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~ 257 (342)
|...|.--+++..+++|+.|+.-|.+ .+|+-..++... +..+.....+..++.|++.. +.|+|+..|.|.+|.+.
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~l-yl~~R~~~~~~~-~~~~~~~~~~~~~~vs~~e~---lvAagt~~g~V~v~ql~ 106 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSV-YLYNRHTGEMRK-LKNEGATGITCVRSVSSVEY---LVAAGTASGRVSVFQLN 106 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceE-EEEecCchhhhc-ccccCccceEEEEEecchhH---hhhhhcCCceEEeehhh
Confidence 33445555667788999999999975 688876665432 22222234466778899998 89999999999999987
Q ss_pred CCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEEEEEEeCCcEEEEEEec
Q 019349 258 FAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSI 321 (342)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~~~~ 321 (342)
...++.. ...+..-..+........|+++. .++++|..-|+|..-.++.
T Consensus 107 ~~~p~~~-~~~t~~d~~~~~rVTal~Ws~~~--------------~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 107 KELPRDL-DYVTPCDKSHKCRVTALEWSKNG--------------MKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred ccCCCcc-eeeccccccCCceEEEEEecccc--------------cEEeecCCCceEEEEEech
Confidence 7333221 11011000111111234576655 7899999999999988887
No 376
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.30 E-value=0.73 Score=44.82 Aligned_cols=111 Identities=12% Similarity=0.028 Sum_probs=63.2
Q ss_pred EEEeeCCCccEEEEeCC------CCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCC
Q 019349 139 CAFSPSLNACFLAVPAS------TTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEA 212 (342)
Q Consensus 139 ~~~~~~~~~~~l~~~~~------~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~ 212 (342)
...+.++++..+|+... +....|.+++... .......+ ...+.-.|+|||..|++.+....+.++.+-...
T Consensus 353 sspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg-~~~~lt~g--~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~ 429 (591)
T PRK13616 353 TSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGG-VAVQVLEG--HSLTRPSWSLDADAVWVVVDGNTVVRVIRDPAT 429 (591)
T ss_pred ccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCC-cceeeecC--CCCCCceECCCCCceEEEecCcceEEEeccCCC
Confidence 34455667777776541 1233566666532 22222233 237778899999999988754344444443222
Q ss_pred eeEEEec--cC----cCceeEEEEEEecCCCcccEEEEEeCCCcEEEEec
Q 019349 213 TKSYSFR--RG----TYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSP 256 (342)
Q Consensus 213 ~~~~~~~--~~----~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~ 256 (342)
..++.+. .+ .....|..+.|||||. .+|... ++.|+|=-+
T Consensus 430 gql~~~~vd~ge~~~~~~g~Issl~wSpDG~---RiA~i~-~g~v~Va~V 475 (591)
T PRK13616 430 GQLARTPVDASAVASRVPGPISELQLSRDGV---RAAMII-GGKVYLAVV 475 (591)
T ss_pred ceEEEEeccCchhhhccCCCcCeEEECCCCC---EEEEEE-CCEEEEEEE
Confidence 2222111 10 1123599999999999 888776 477777444
No 377
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.22 E-value=0.31 Score=35.76 Aligned_cols=101 Identities=18% Similarity=0.189 Sum_probs=61.2
Q ss_pred EEEEeeCCCcc-EEEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEE
Q 019349 138 LCAFSPSLNAC-FLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSY 216 (342)
Q Consensus 138 ~~~~~~~~~~~-~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~ 216 (342)
++.+.+++++. -|++++ .|..|++|+-. +.+..+..+ +.|++++-... ..++.|-+.|++ -+++- .+.+.
T Consensus 5 l~~~d~d~dg~~eLlvGs--~D~~IRvf~~~--e~~~Ei~e~-~~v~~L~~~~~-~~F~Y~l~NGTV-GvY~~--~~RlW 75 (111)
T PF14783_consen 5 LCLFDFDGDGENELLVGS--DDFEIRVFKGD--EIVAEITET-DKVTSLCSLGG-GRFAYALANGTV-GVYDR--SQRLW 75 (111)
T ss_pred EEEEecCCCCcceEEEec--CCcEEEEEeCC--cEEEEEecc-cceEEEEEcCC-CEEEEEecCCEE-EEEeC--cceee
Confidence 33344444432 344444 69999999854 455666553 45777766655 679999999984 78875 33444
Q ss_pred EeccCcCceeEEEEEEe---cCCCcccEEEEEeCCCcEE
Q 019349 217 SFRRGTYPSTIFSLSFG---QSMQFQDILVATSSSGSLH 252 (342)
Q Consensus 217 ~~~~~~~~~~v~~l~fs---~d~~~~~~l~~~s~dg~i~ 252 (342)
+.+... .+.+|++. .||. .-|++|=.+|.|-
T Consensus 76 RiKSK~---~~~~~~~~D~~gdG~--~eLI~GwsnGkve 109 (111)
T PF14783_consen 76 RIKSKN---QVTSMAFYDINGDGV--PELIVGWSNGKVE 109 (111)
T ss_pred eeccCC---CeEEEEEEcCCCCCc--eEEEEEecCCeEE
Confidence 443222 24555443 3443 3688888888774
No 378
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.04 E-value=0.38 Score=35.27 Aligned_cols=96 Identities=13% Similarity=0.124 Sum_probs=59.2
Q ss_pred CCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEEEEEecCCceEEEEEcCC-eEEEEE-CCeEEEEECCCCceeeEEeCCC
Q 019349 56 YSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRLNKK-RLVIVL-REKTYIYDANTLAILDTIDTVP 133 (342)
Q Consensus 56 ~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~i~~~~~-~~~~~~-d~~i~i~d~~~~~~~~~~~~~~ 133 (342)
-++..-++++. .|..|++|+- .+.+.++...+.|..+.-... .+..+. .|+|-+|+-. +.+..++...
T Consensus 12 ~dg~~eLlvGs------~D~~IRvf~~--~e~~~Ei~e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~--~RlWRiKSK~ 81 (111)
T PF14783_consen 12 GDGENELLVGS------DDFEIRVFKG--DEIVAEITETDKVTSLCSLGGGRFAYALANGTVGVYDRS--QRLWRIKSKN 81 (111)
T ss_pred CCCcceEEEec------CCcEEEEEeC--CcEEEEEecccceEEEEEcCCCEEEEEecCCEEEEEeCc--ceeeeeccCC
Confidence 33445555655 5999999984 478889988888988876544 444444 7799888752 3344444444
Q ss_pred CCceEEEEeeCCCccEEEEeCCCCccEEE
Q 019349 134 NLKGLCAFSPSLNACFLAVPASTTKGSVL 162 (342)
Q Consensus 134 ~~~~~~~~~~~~~~~~l~~~~~~~~g~i~ 162 (342)
.+..+..+..+.++..-...|. .+|.|-
T Consensus 82 ~~~~~~~~D~~gdG~~eLI~Gw-snGkve 109 (111)
T PF14783_consen 82 QVTSMAFYDINGDGVPELIVGW-SNGKVE 109 (111)
T ss_pred CeEEEEEEcCCCCCceEEEEEe-cCCeEE
Confidence 4555555555555544333333 456653
No 379
>PRK10115 protease 2; Provisional
Probab=96.00 E-value=1.9 Score=42.96 Aligned_cols=243 Identities=12% Similarity=0.055 Sum_probs=119.6
Q ss_pred CeEEEEEcCCCCEEEEEcCC-c-----EEEEeCCCCcEEEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEEC
Q 019349 9 PVFFVSFNQDNSGFALSTKD-G-----FKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNT 82 (342)
Q Consensus 9 ~V~~l~fs~d~~~la~g~~~-g-----~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~ 82 (342)
.+..+.+||||++|+.+.+. | +++.|+.+++.+.....+.-..+.|..+++.+++....... .....|..+++
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~~~~~w~~D~~~~~y~~~~~~~-~~~~~v~~h~l 206 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVEPSFVWANDSWTFYYVRKHPVT-LLPYQVWRHTI 206 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcceEEEEeeCCCEEEEEEecCCC-CCCCEEEEEEC
Confidence 47778999999999877543 3 46778888764332211212346777777777766542110 13468999999
Q ss_pred CCC--cEEEEEecC-CceE-EEEEc--CCeEEEEE----CCeEEEEECC--CCceeeEEeCCCCCceEEEEeeCCCccEE
Q 019349 83 TTG--TALRELNFL-TSIL-AVRLN--KKRLVIVL----REKTYIYDAN--TLAILDTIDTVPNLKGLCAFSPSLNACFL 150 (342)
Q Consensus 83 ~~~--~~~~~~~~~-~~v~-~i~~~--~~~~~~~~----d~~i~i~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 150 (342)
.++ +...-++.. .... .+..+ ...+++.. ++.+.+++.. ++.....+..... ....+....+..++
T Consensus 207 gt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ly~ 284 (686)
T PRK10115 207 GTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKD--HEYSLDHYQHRFYL 284 (686)
T ss_pred CCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCC--CEEEEEeCCCEEEE
Confidence 888 322223222 2121 22222 33444433 4578888853 3332222222211 22222322333333
Q ss_pred EEeCCCCccEEEEEEccCCceeEEEecc-c-CCeeEEEECCCCCEEEEEeCCCcEEEEEEcCC-CeeEEEeccCcCceeE
Q 019349 151 AVPASTTKGSVLVYNVMELHSHCEIDAH-Q-APLAAIVLSSNGMYIATASEQGTIIRVFLVSE-ATKSYSFRRGTYPSTI 227 (342)
Q Consensus 151 ~~~~~~~~g~i~iwd~~~~~~~~~~~~h-~-~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~-~~~~~~~~~~~~~~~v 227 (342)
.+........|...++........+-.+ . ..|..+.+.. +.++++...+|. -+++-+.. +..+..+... .+..+
T Consensus 285 ~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~-~~l~~~~~~~g~-~~l~~~~~~~~~~~~l~~~-~~~~~ 361 (686)
T PRK10115 285 RSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFT-DWLVVEERQRGL-TSLRQINRKTREVIGIAFD-DPAYV 361 (686)
T ss_pred EEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEEC-CEEEEEEEeCCE-EEEEEEcCCCCceEEecCC-CCceE
Confidence 3322112344555565532222334444 3 3688888873 355556666664 34554432 3333443211 12223
Q ss_pred EEEEEe--cCCCcccEEEEEeCC---CcEEEEecCCC
Q 019349 228 FSLSFG--QSMQFQDILVATSSS---GSLHVFSPGFA 259 (342)
Q Consensus 228 ~~l~fs--~d~~~~~~l~~~s~d---g~i~vwd~~~~ 259 (342)
..+.++ +++. .++++.++- +++..+|+++.
T Consensus 362 ~~~~~~~~~~~~--~~~~~~ss~~~P~~~y~~d~~~~ 396 (686)
T PRK10115 362 TWIAYNPEPETS--RLRYGYSSMTTPDTLFELDMDTG 396 (686)
T ss_pred eeecccCCCCCc--eEEEEEecCCCCCEEEEEECCCC
Confidence 334455 3332 144444432 56888887664
No 380
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.96 E-value=0.93 Score=39.05 Aligned_cols=69 Identities=10% Similarity=0.105 Sum_probs=47.7
Q ss_pred cCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEec
Q 019349 179 QAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSP 256 (342)
Q Consensus 179 ~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~ 256 (342)
.+-|-+|+.+.+..+++..|-.|...-+||..+|..+.+-.- .....++ +... =+++.|.+|.+.++.-
T Consensus 279 anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l----~daaGva--~~~~---gf~vssg~G~~~~~s~ 347 (366)
T COG3490 279 ANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAAL----PDAAGVA--AAKG---GFAVSSGQGRIIFYSR 347 (366)
T ss_pred HhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEecccc----cccccce--eccC---ceEEecCCceEEeccc
Confidence 345778899887777777777777777999999987654321 1123333 3333 4788888999998853
No 381
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.96 E-value=1 Score=44.84 Aligned_cols=80 Identities=15% Similarity=0.209 Sum_probs=53.6
Q ss_pred CeeEEEECCCCCEEEEEeCCCcEEEEEEcCC----------Cee--EEE-ec------cCcCceeEEEEEEecCCCcccE
Q 019349 181 PLAAIVLSSNGMYIATASEQGTIIRVFLVSE----------ATK--SYS-FR------RGTYPSTIFSLSFGQSMQFQDI 241 (342)
Q Consensus 181 ~v~~i~~s~dg~~lat~s~dg~~irlwd~~~----------~~~--~~~-~~------~~~~~~~v~~l~fs~d~~~~~~ 241 (342)
.|..|.+||+|++||-.|..|-. |-.+.. |+. ..+ +. .......|..+.|+|.+.....
T Consensus 86 ~v~~i~~n~~g~~lal~G~~~v~--V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 86 EVHQISLNPTGSLLALVGPRGVV--VLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH 163 (717)
T ss_pred eEEEEEECCCCCEEEEEcCCcEE--EEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence 58889999999999999998743 444421 111 111 10 1112345889999997521238
Q ss_pred EEEEeCCCcEEEEecCCCCCC
Q 019349 242 LVATSSSGSLHVFSPGFAINQ 262 (342)
Q Consensus 242 l~~~s~dg~i~vwd~~~~~~~ 262 (342)
|++=.+|+++++||+.....+
T Consensus 164 l~vLtsdn~lR~y~~~~~~~p 184 (717)
T PF10168_consen 164 LVVLTSDNTLRLYDISDPQHP 184 (717)
T ss_pred EEEEecCCEEEEEecCCCCCC
Confidence 999999999999999765544
No 382
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=95.87 E-value=0.027 Score=54.85 Aligned_cols=107 Identities=18% Similarity=0.233 Sum_probs=74.7
Q ss_pred eeCCCccEEEEeC--CCCccEEEEEEccCCceeE--EEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEE
Q 019349 142 SPSLNACFLAVPA--STTKGSVLVYNVMELHSHC--EIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYS 217 (342)
Q Consensus 142 ~~~~~~~~l~~~~--~~~~g~i~iwd~~~~~~~~--~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~ 217 (342)
+++|...++|++. -...|.|.||- .+|++.. +.+-| +++++|+|..-.|+.|-+-|. +.+|...+.+. ++
T Consensus 22 SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~P~h---atSLCWHpe~~vLa~gwe~g~-~~v~~~~~~e~-ht 95 (1416)
T KOG3617|consen 22 SWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTYPVH---ATSLCWHPEEFVLAQGWEMGV-SDVQKTNTTET-HT 95 (1416)
T ss_pred ccCCCCceeEEEEecCCCCceEEEEe-cCCCCCccccccee---hhhhccChHHHHHhhccccce-eEEEecCCcee-ee
Confidence 3444444554432 11457888874 4454432 23333 467999999888888888885 58999876543 44
Q ss_pred eccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCC
Q 019349 218 FRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGF 258 (342)
Q Consensus 218 ~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~ 258 (342)
.. ..++++|..+.|||+|. .|.++..-|.|++|....
T Consensus 96 v~-~th~a~i~~l~wS~~G~---~l~t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 96 VV-ETHPAPIQGLDWSHDGT---VLMTLDNPGSVHLWRYDV 132 (1416)
T ss_pred ec-cCCCCCceeEEecCCCC---eEEEcCCCceeEEEEeee
Confidence 43 24677899999999999 999999999999999874
No 383
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.75 E-value=0.035 Score=45.88 Aligned_cols=100 Identities=12% Similarity=0.140 Sum_probs=62.5
Q ss_pred EEEECCeEEEEECCCCc-eeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCceeEEEeccc-CCeeEE
Q 019349 108 VIVLREKTYIYDANTLA-ILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQ-APLAAI 185 (342)
Q Consensus 108 ~~~~d~~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~-~~v~~i 185 (342)
+..+++.|++|+..-.. ....+....+ .+.+.-+..+...+++.+. .+|.|+.|++.-.+.+.....|. .++...
T Consensus 75 vG~~dg~v~~~n~n~~g~~~d~~~s~~e--~i~~~Ip~~~~~~~~c~~~-~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ 151 (238)
T KOG2444|consen 75 VGTSDGAVYVFNWNLEGAHSDRVCSGEE--SIDLGIPNGRDSSLGCVGA-QDGRIRACNIKPNKVLGYVGQHNFESGEEL 151 (238)
T ss_pred eecccceEEEecCCccchHHHhhhcccc--cceeccccccccceeEEec-cCCceeeeccccCceeeeeccccCCCccee
Confidence 33448999999876221 1111111111 2333333333333555554 79999999999988888777787 667777
Q ss_pred EECCCCCEEEEE--eCCCcEEEEEEcCC
Q 019349 186 VLSSNGMYIATA--SEQGTIIRVFLVSE 211 (342)
Q Consensus 186 ~~s~dg~~lat~--s~dg~~irlwd~~~ 211 (342)
..+..+++|+.+ |.|.. ++.|++..
T Consensus 152 ivv~sd~~i~~a~~S~d~~-~k~W~ve~ 178 (238)
T KOG2444|consen 152 IVVGSDEFLKIADTSHDRV-LKKWNVEK 178 (238)
T ss_pred EEecCCceEEeeccccchh-hhhcchhh
Confidence 777777778877 77764 57888754
No 384
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=95.60 E-value=2.9 Score=42.07 Aligned_cols=229 Identities=12% Similarity=0.121 Sum_probs=114.7
Q ss_pred CCCCeEEEEECCCCc-EEEEEecCC--ceEEEE--Ec---CCeEEEEECCeEEEEECCCCceeeEEeC--CCCCceEEEE
Q 019349 72 LSPRRLCLFNTTTGT-ALRELNFLT--SILAVR--LN---KKRLVIVLREKTYIYDANTLAILDTIDT--VPNLKGLCAF 141 (342)
Q Consensus 72 ~~d~~i~iwd~~~~~-~~~~~~~~~--~v~~i~--~~---~~~~~~~~d~~i~i~d~~~~~~~~~~~~--~~~~~~~~~~ 141 (342)
+.|+++++..-.-+- ....++.++ .+..+. ++ ++.+++..-+.-++..+... ...+... ......+.+-
T Consensus 379 ~kdgSLRiiRngi~I~e~A~i~l~Gikg~w~lk~~v~~~~d~ylvlsf~~eTrvl~i~~e-~ee~~~~gf~~~~~Tif~S 457 (1096)
T KOG1897|consen 379 FKDGSLRIIRNGIGIDELASIDLPGIKGMWSLKSMVDENYDNYLVLSFISETRVLNISEE-VEETEDPGFSTDEQTIFCS 457 (1096)
T ss_pred CCCCcEEEEecccccceeeEeecCCccceeEeeccccccCCcEEEEEeccceEEEEEccc-eEEeccccccccCceEEEE
Confidence 468999997643332 234455555 444444 32 23555555666666666432 1111110 0111122221
Q ss_pred eeCCCccEEEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccC
Q 019349 142 SPSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRG 221 (342)
Q Consensus 142 ~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~ 221 (342)
...++ +.+=.. ...|++++-. .....+.. ...++..+.+.+...++.++.++.++ ..++..+. +.+....
T Consensus 458 ~i~g~-~lvQvT----s~~iRl~ss~--~~~~~W~~-p~~~ti~~~~~n~sqVvvA~~~~~l~-y~~i~~~~-l~e~~~~ 527 (1096)
T KOG1897|consen 458 TINGN-QLVQVT----SNSIRLVSSA--GLRSEWRP-PGKITIGVVSANASQVVVAGGGLALF-YLEIEDGG-LREVSHK 527 (1096)
T ss_pred ccCCc-eEEEEe----cccEEEEcch--hhhhcccC-CCceEEEEEeecceEEEEecCccEEE-EEEeeccc-eeeeeeh
Confidence 22222 122221 2457777754 12223332 23345555556666788887776543 55665544 3333223
Q ss_pred cCceeEEEEEEecCCCccc---EEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCC
Q 019349 222 TYPSTIFSLSFGQSMQFQD---ILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPA 298 (342)
Q Consensus 222 ~~~~~v~~l~fs~d~~~~~---~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (342)
....+|.|+.++|-+..++ ++++|..+..+.+--.-....... .+..-+...|.. .....+
T Consensus 528 ~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~---~~~l~~~~iPRS-------------Il~~~~ 591 (1096)
T KOG1897|consen 528 EFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILIT---HEQLSGEIIPRS-------------ILLTTF 591 (1096)
T ss_pred eecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceee---eeccCCCccchh-------------eeeEEe
Confidence 3355699999997643334 899998887765543222111000 000001112211 111122
Q ss_pred CccccEEEEEEeCCcEEEEEEecCCCCee
Q 019349 299 GVKRASVSVITYNGYFVEYIFSINNCCES 327 (342)
Q Consensus 299 ~~~~~~l~~~~~dg~v~~~~~~~~~~~~~ 327 (342)
..+..+|.++..||.+..|.++...++.+
T Consensus 592 e~d~~yLlvalgdG~l~~fv~d~~tg~ls 620 (1096)
T KOG1897|consen 592 EGDIHYLLVALGDGALLYFVLDINTGQLS 620 (1096)
T ss_pred eccceEEEEEcCCceEEEEEEEcccceEc
Confidence 33357999999999999999998877654
No 385
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=95.57 E-value=1.5 Score=43.13 Aligned_cols=159 Identities=21% Similarity=0.256 Sum_probs=89.6
Q ss_pred cCCceEEEEEcCCeEEEEECCeEEEEECCCCcee------eEEeCCC--------------CCc--eEEEEeeCCCccEE
Q 019349 93 FLTSILAVRLNKKRLVIVLREKTYIYDANTLAIL------DTIDTVP--------------NLK--GLCAFSPSLNACFL 150 (342)
Q Consensus 93 ~~~~v~~i~~~~~~~~~~~d~~i~i~d~~~~~~~------~~~~~~~--------------~~~--~~~~~~~~~~~~~l 150 (342)
+.+...++.- .+.+++|..+.|+||++...... ..+.+.+ .+. ...-+..-++...|
T Consensus 39 fKNNLtalsq-~n~LFiA~~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVL 117 (717)
T PF08728_consen 39 FKNNLTALSQ-RNLLFIAYQSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVL 117 (717)
T ss_pred cccceeEEec-CCEEEEEECCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEE
Confidence 3344444433 77788888999999998643221 1111111 111 11122222334456
Q ss_pred EEeCCCCccEEEEEEccC-------C-------------ceeEEEecccCCeeEEEEC--CCCCEEEEEeCCCcEEEEEE
Q 019349 151 AVPASTTKGSVLVYNVME-------L-------------HSHCEIDAHQAPLAAIVLS--SNGMYIATASEQGTIIRVFL 208 (342)
Q Consensus 151 ~~~~~~~~g~i~iwd~~~-------~-------------~~~~~~~~h~~~v~~i~~s--~dg~~lat~s~dg~~irlwd 208 (342)
+++. .||.|.+|.+++ . ++...+. -....+.+++. ...++||.++.... |.||-
T Consensus 118 l~c~--DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~-VTVFa 193 (717)
T PF08728_consen 118 LLCT--DDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQE-VTVFA 193 (717)
T ss_pred EEEe--cCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCce-EEEEE
Confidence 6555 689999997621 1 0112222 23467889998 77777777776654 56776
Q ss_pred cCCC-eeEEEeccCcCceeEEEEEEecCCCccc---EEEEEeCCCcEEEEec
Q 019349 209 VSEA-TKSYSFRRGTYPSTIFSLSFGQSMQFQD---ILVATSSSGSLHVFSP 256 (342)
Q Consensus 209 ~~~~-~~~~~~~~~~~~~~v~~l~fs~d~~~~~---~l~~~s~dg~i~vwd~ 256 (342)
.... +....-....+...|.+|+|-++....+ ++++++-.|.+-+|++
T Consensus 194 f~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 194 FALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 5442 1111111122345699999987652112 7888999999999888
No 386
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=95.41 E-value=0.059 Score=31.98 Aligned_cols=34 Identities=15% Similarity=0.212 Sum_probs=27.3
Q ss_pred eEEEEEEecCCCcccEEEEEeCCCcEEEEecCCC
Q 019349 226 TIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFA 259 (342)
Q Consensus 226 ~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~ 259 (342)
.+.++.|||+....++|+.+-.-|.|+|+|+++.
T Consensus 2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 3789999986543458999989999999999853
No 387
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=95.33 E-value=0.089 Score=47.81 Aligned_cols=93 Identities=12% Similarity=0.103 Sum_probs=57.7
Q ss_pred ccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcC--------------
Q 019349 158 KGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTY-------------- 223 (342)
Q Consensus 158 ~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~-------------- 223 (342)
.+.+.|||+.+++.... ......+....|||+|+.+|-... +.+ .+++..+++...--..+..
T Consensus 22 ~~~y~i~d~~~~~~~~l-~~~~~~~~~~~~sP~g~~~~~v~~-~nl-y~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEE 98 (353)
T PF00930_consen 22 KGDYYIYDIETGEITPL-TPPPPKLQDAKWSPDGKYIAFVRD-NNL-YLRDLATGQETQLTTDGEPGIYNGVPDWVYEEE 98 (353)
T ss_dssp EEEEEEEETTTTEEEES-S-EETTBSEEEE-SSSTEEEEEET-TEE-EEESSTTSEEEESES--TTTEEESB--HHHHHH
T ss_pred ceeEEEEecCCCceEEC-cCCccccccceeecCCCeeEEEec-Cce-EEEECCCCCeEEeccccceeEEcCccceecccc
Confidence 47799999999764432 222567889999999999999875 454 6898887754322111100
Q ss_pred -ceeEEEEEEecCCCcccEEEEEeCC-CcEEEEec
Q 019349 224 -PSTIFSLSFGQSMQFQDILVATSSS-GSLHVFSP 256 (342)
Q Consensus 224 -~~~v~~l~fs~d~~~~~~l~~~s~d-g~i~vwd~ 256 (342)
-..-..+-||||++ +||....| ..|+.+.+
T Consensus 99 v~~~~~~~~WSpd~~---~la~~~~d~~~v~~~~~ 130 (353)
T PF00930_consen 99 VFDRRSAVWWSPDSK---YLAFLRFDEREVPEYPL 130 (353)
T ss_dssp TSSSSBSEEE-TTSS---EEEEEEEE-TTS-EEEE
T ss_pred ccccccceEECCCCC---EEEEEEECCcCCceEEe
Confidence 00124578999999 88877554 34555544
No 388
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=95.25 E-value=0.8 Score=42.61 Aligned_cols=142 Identities=13% Similarity=0.243 Sum_probs=85.5
Q ss_pred CCCeEEEEcCCCCCCCCCCeEEEEECCCCcEEEEEecCCceEEEEEcCC---------eEEE-EECCeEEEEECCC-Cce
Q 019349 57 SSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRLNKK---------RLVI-VLREKTYIYDANT-LAI 125 (342)
Q Consensus 57 ~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~i~~~~~---------~~~~-~~d~~i~i~d~~~-~~~ 125 (342)
+++.+.+-++ ..+++.-.|++.|+.+.+......+ -+.+.|. ..++ .++..|.-.|-+- +..
T Consensus 478 dssli~~dg~------~~~kLykmDIErGkvveeW~~~ddv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNK 550 (776)
T COG5167 478 DSSLIYLDGG------ERDKLYKMDIERGKVVEEWDLKDDV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNK 550 (776)
T ss_pred CcceEEecCC------CcccceeeecccceeeeEeecCCcc-eeecCCchhHHhcCccceEEeecccceEEecccccCCc
Confidence 4455555444 4678888899999999998877766 4555543 2233 3366665555532 211
Q ss_pred eeEEeCC--CCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcE
Q 019349 126 LDTIDTV--PNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTI 203 (342)
Q Consensus 126 ~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~ 203 (342)
+...+.. .......+... ...-++|.++ ..|-|++||--.......+++....|..|..+.+|.+|+..+.. .
T Consensus 551 i~v~esKdY~tKn~Fss~~t-TesGyIa~as--~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~-y- 625 (776)
T COG5167 551 IKVVESKDYKTKNKFSSGMT-TESGYIAAAS--RKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKN-Y- 625 (776)
T ss_pred eeeeeehhcccccccccccc-ccCceEEEec--CCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecc-e-
Confidence 1111100 00001111111 1234888887 57999999965444445577888899999999999987777654 3
Q ss_pred EEEEEcC
Q 019349 204 IRVFLVS 210 (342)
Q Consensus 204 irlwd~~ 210 (342)
+-+-|++
T Consensus 626 llL~d~~ 632 (776)
T COG5167 626 LLLTDVP 632 (776)
T ss_pred EEEEecc
Confidence 4477775
No 389
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.92 E-value=0.079 Score=53.03 Aligned_cols=70 Identities=14% Similarity=0.118 Sum_probs=50.8
Q ss_pred CCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCC
Q 019349 189 SNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQR 263 (342)
Q Consensus 189 ~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~ 263 (342)
--+..++.|++.|.+ -.+|+... .-.-.+......+|.+++|+.||+ +++.|-.+|.|.+||+.+++..+
T Consensus 97 ~~~~~ivi~Ts~ghv-l~~d~~~n-L~~~~~ne~v~~~Vtsvafn~dg~---~l~~G~~~G~V~v~D~~~~k~l~ 166 (1206)
T KOG2079|consen 97 IVVVPIVIGTSHGHV-LLSDMTGN-LGPLHQNERVQGPVTSVAFNQDGS---LLLAGLGDGHVTVWDMHRAKILK 166 (1206)
T ss_pred eeeeeEEEEcCchhh-hhhhhhcc-cchhhcCCccCCcceeeEecCCCc---eeccccCCCcEEEEEccCCccee
Confidence 345678888888886 48887542 111111222345799999999999 99999999999999998876543
No 390
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=94.87 E-value=0.14 Score=42.33 Aligned_cols=106 Identities=14% Similarity=0.035 Sum_probs=64.1
Q ss_pred EEEEeCCCCccEEEEEEccCCc-eeEEEecccCCeeE-EEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCcee
Q 019349 149 FLAVPASTTKGSVLVYNVMELH-SHCEIDAHQAPLAA-IVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPST 226 (342)
Q Consensus 149 ~l~~~~~~~~g~i~iwd~~~~~-~~~~~~~h~~~v~~-i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~ 226 (342)
-+++++ .+|.|.+|...... .......-...|.+ |.--.++.+..+++.||. ||.|++.-.+.+... .++....
T Consensus 72 ~~~vG~--~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~-ir~~n~~p~k~~g~~-g~h~~~~ 147 (238)
T KOG2444|consen 72 KLMVGT--SDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGR-IRACNIKPNKVLGYV-GQHNFES 147 (238)
T ss_pred eEEeec--ccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCc-eeeeccccCceeeee-ccccCCC
Confidence 444444 58999999876221 11111111233333 333456678999999997 699999877765543 2222133
Q ss_pred EEEEEEecCCCcccEEEEE--eCCCcEEEEecCCCCC
Q 019349 227 IFSLSFGQSMQFQDILVAT--SSSGSLHVFSPGFAIN 261 (342)
Q Consensus 227 v~~l~fs~d~~~~~~l~~~--s~dg~i~vwd~~~~~~ 261 (342)
+..+..+..++ +|+.+ |.|..++.|+++....
T Consensus 148 ~e~~ivv~sd~---~i~~a~~S~d~~~k~W~ve~~~d 181 (238)
T KOG2444|consen 148 GEELIVVGSDE---FLKIADTSHDRVLKKWNVEKIKD 181 (238)
T ss_pred cceeEEecCCc---eEEeeccccchhhhhcchhhhhc
Confidence 44444455555 67777 8888888888876543
No 391
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=94.79 E-value=0.047 Score=53.60 Aligned_cols=160 Identities=13% Similarity=0.183 Sum_probs=81.5
Q ss_pred cCCceEEEEEcCCe-EEE-EECCeEEEEECC--CCceeeEE----eCC-CCCceEEEEee-CCCccEEEEeCCCCccEEE
Q 019349 93 FLTSILAVRLNKKR-LVI-VLREKTYIYDAN--TLAILDTI----DTV-PNLKGLCAFSP-SLNACFLAVPASTTKGSVL 162 (342)
Q Consensus 93 ~~~~v~~i~~~~~~-~~~-~~d~~i~i~d~~--~~~~~~~~----~~~-~~~~~~~~~~~-~~~~~~l~~~~~~~~g~i~ 162 (342)
+++.+..+.|-... --. -.-+...+|++. .|+.+..+ .++ .++...+..++ -++..++.+.. .+|+|+
T Consensus 131 f~G~v~dl~fah~~~pk~~~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~--~~~~i~ 208 (1283)
T KOG1916|consen 131 FPGGVGDLQFAHTKCPKGRRLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGL--KGGEIR 208 (1283)
T ss_pred CCCCcccccccccCChHHHHHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeecc--CCCcee
Confidence 45566666663211 000 113567888774 34333222 111 11222332232 23445665554 578888
Q ss_pred EEEccCCceeEEEecccCCeeEEE-----------ECCCCCEEEEEeCCCcEEEEEEcC-CC----eeEEEeccCcCcee
Q 019349 163 VYNVMELHSHCEIDAHQAPLAAIV-----------LSSNGMYIATASEQGTIIRVFLVS-EA----TKSYSFRRGTYPST 226 (342)
Q Consensus 163 iwd~~~~~~~~~~~~h~~~v~~i~-----------~s~dg~~lat~s~dg~~irlwd~~-~~----~~~~~~~~~~~~~~ 226 (342)
+....+... ..+.+|...+..++ +||||+.+|+++.||. ++.|.+. +| .++.+++.+.....
T Consensus 209 lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~-v~f~Qiyi~g~~~~rclhewkphd~~p~ 286 (1283)
T KOG1916|consen 209 LLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGS-VGFYQIYITGKIVHRCLHEWKPHDKHPR 286 (1283)
T ss_pred EeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCc-cceeeeeeeccccHhhhhccCCCCCCCc
Confidence 866544322 33445776655543 5999999999999997 4777653 23 34455544432223
Q ss_pred EEEEEEecCCC------cccEEEEEeCCC-cEEEEecC
Q 019349 227 IFSLSFGQSMQ------FQDILVATSSSG-SLHVFSPG 257 (342)
Q Consensus 227 v~~l~fs~d~~------~~~~l~~~s~dg-~i~vwd~~ 257 (342)
|..+ |+.... +=-+++++++-| .+++|.-.
T Consensus 287 vC~l-c~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a 323 (1283)
T KOG1916|consen 287 VCWL-CHKQEILVVSIGKWVLRITTTDVNREEKFWAEA 323 (1283)
T ss_pred eeee-eccccccCCccceeEEEEecccCCcceeEeecc
Confidence 4444 432210 001445555544 48888643
No 392
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=94.75 E-value=3.1 Score=37.72 Aligned_cols=232 Identities=14% Similarity=0.098 Sum_probs=114.5
Q ss_pred CCCeEEEEEcCCCCEEEEEcCCcEEEEeCCCCcEEE-EEe------------------eCCEEEEEEcCCCCeEEEEcCC
Q 019349 7 SYPVFFVSFNQDNSGFALSTKDGFKIFDSSTGRLCY-ERA------------------VGAFSIVEMLYSSSLLAIVGAG 67 (342)
Q Consensus 7 ~~~V~~l~fs~d~~~la~g~~~g~~v~d~~~~~~~~-~~~------------------~~~~~~~~~~~~~~~~~~~~~g 67 (342)
...+....|||||+.+|-..++.+.+++..+++... +.. .+.-..+.+.++++.+++..-.
T Consensus 42 ~~~~~~~~~sP~g~~~~~v~~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d 121 (353)
T PF00930_consen 42 PPKLQDAKWSPDGKYIAFVRDNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFD 121 (353)
T ss_dssp ETTBSEEEE-SSSTEEEEEETTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE
T ss_pred ccccccceeecCCCeeEEEecCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEEC
Confidence 356788999999999999888888888877663321 110 1122345566666666543321
Q ss_pred C-----------------CC----------CC--CCCeEEEEECCCCcEEE-EEe-----cCCceEEEEEcCCeE--EEE
Q 019349 68 E-----------------QP----------SL--SPRRLCLFNTTTGTALR-ELN-----FLTSILAVRLNKKRL--VIV 110 (342)
Q Consensus 68 ~-----------------~~----------~~--~d~~i~iwd~~~~~~~~-~~~-----~~~~v~~i~~~~~~~--~~~ 110 (342)
. .| .. ..-.+.++|+.+++... ... ....+..+.|.++.. ++.
T Consensus 122 ~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~ 201 (353)
T PF00930_consen 122 EREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQ 201 (353)
T ss_dssp -TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEE
T ss_pred CcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEE
Confidence 0 00 00 11236667877766431 111 122567778866544 332
Q ss_pred E----CC--eEEEEECCCCceeeEEeC-CC---CCceEEEEe-eCCCccEEEEeCCCCccEEEEEEccCCceeEEEeccc
Q 019349 111 L----RE--KTYIYDANTLAILDTIDT-VP---NLKGLCAFS-PSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQ 179 (342)
Q Consensus 111 ~----d~--~i~i~d~~~~~~~~~~~~-~~---~~~~~~~~~-~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~ 179 (342)
. .+ .+.+.|..+++....... .. .......+. +.++ .++.....+.-..|.+++...+. ...+....
T Consensus 202 ~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~-~~l~~s~~~G~~hly~~~~~~~~-~~~lT~G~ 279 (353)
T PF00930_consen 202 WLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGN-EFLWISERDGYRHLYLYDLDGGK-PRQLTSGD 279 (353)
T ss_dssp EEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSS-EEEEEEETTSSEEEEEEETTSSE-EEESS-SS
T ss_pred EcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCC-EEEEEEEcCCCcEEEEEcccccc-eeccccCc
Confidence 2 22 566778876643222211 11 111222222 2322 33333332223345555665554 33555555
Q ss_pred CCeeE-EEECCCCCEEE-EEeCCC--cEEEEE--EcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEe
Q 019349 180 APLAA-IVLSSNGMYIA-TASEQG--TIIRVF--LVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATS 246 (342)
Q Consensus 180 ~~v~~-i~~s~dg~~la-t~s~dg--~~irlw--d~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s 246 (342)
-.|+. +.++++++.|. +|..++ . -.|| ++..+..+..+....... ..+.|||+++ +++...
T Consensus 280 ~~V~~i~~~d~~~~~iyf~a~~~~p~~-r~lY~v~~~~~~~~~~LT~~~~~~--~~~~~Spdg~---y~v~~~ 346 (353)
T PF00930_consen 280 WEVTSILGWDEDNNRIYFTANGDNPGE-RHLYRVSLDSGGEPKCLTCEDGDH--YSASFSPDGK---YYVDTY 346 (353)
T ss_dssp S-EEEEEEEECTSSEEEEEESSGGTTS-BEEEEEETTETTEEEESSTTSSTT--EEEEE-TTSS---EEEEEE
T ss_pred eeecccceEcCCCCEEEEEecCCCCCc-eEEEEEEeCCCCCeEeccCCCCCc--eEEEECCCCC---EEEEEE
Confidence 66754 67888877665 444322 2 1344 455234445554332221 6899999998 665543
No 393
>PRK13616 lipoprotein LpqB; Provisional
Probab=94.56 E-value=1.3 Score=43.12 Aligned_cols=110 Identities=20% Similarity=0.147 Sum_probs=62.4
Q ss_pred EEEEeeCCCccEEEEeCC----------CCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEE-
Q 019349 138 LCAFSPSLNACFLAVPAS----------TTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRV- 206 (342)
Q Consensus 138 ~~~~~~~~~~~~l~~~~~----------~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irl- 206 (342)
...-+++|++..+++... ...+.+.+.++..++... .....|..+.|||||..||.-. +|++ .+
T Consensus 399 ~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v-~Va 473 (591)
T PRK13616 399 LTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKV-YLA 473 (591)
T ss_pred CCCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEE-EEE
Confidence 444556666555554421 123445555555444322 3356799999999999988876 4654 35
Q ss_pred --EEcCCCe-eE---EEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecC
Q 019349 207 --FLVSEAT-KS---YSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPG 257 (342)
Q Consensus 207 --wd~~~~~-~~---~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~ 257 (342)
-....|+ .+ .++... ....+.+++|.+++. |+++..++...+|.+.
T Consensus 474 ~Vvr~~~G~~~l~~~~~l~~~-l~~~~~~l~W~~~~~----L~V~~~~~~~~v~~v~ 525 (591)
T PRK13616 474 VVEQTEDGQYALTNPREVGPG-LGDTAVSLDWRTGDS----LVVGRSDPEHPVWYVN 525 (591)
T ss_pred EEEeCCCCceeecccEEeecc-cCCccccceEecCCE----EEEEecCCCCceEEEe
Confidence 4444554 11 111111 112357899999997 4566666655666654
No 394
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=94.38 E-value=4.2 Score=37.54 Aligned_cols=196 Identities=12% Similarity=0.087 Sum_probs=89.5
Q ss_pred CeEEEEcCCCCCCCCCCeEEEEECCCC----cEEEEEec----C----CceEEEEEcCCe-EEEEE----C----CeEEE
Q 019349 59 SLLAIVGAGEQPSLSPRRLCLFNTTTG----TALRELNF----L----TSILAVRLNKKR-LVIVL----R----EKTYI 117 (342)
Q Consensus 59 ~~~~~~~~g~~~~~~d~~i~iwd~~~~----~~~~~~~~----~----~~v~~i~~~~~~-~~~~~----d----~~i~i 117 (342)
+++++-+- ..+.|.|.|+.+. +....++. . +....+..-+++ +++.. + +.+.+
T Consensus 88 r~Li~PgL------~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~l 161 (461)
T PF05694_consen 88 RYLILPGL------RSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVL 161 (461)
T ss_dssp -EEEEEBT------TT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEE
T ss_pred CcEEeeee------ccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEE
Confidence 45555543 5789999998743 23333431 0 111223333444 44433 1 36778
Q ss_pred EECCCCceeeEEeCCCCC-ceEEEEeeCCCccEEEEeCCC------------------CccEEEEEEccCCceeEEEecc
Q 019349 118 YDANTLAILDTIDTVPNL-KGLCAFSPSLNACFLAVPAST------------------TKGSVLVYNVMELHSHCEIDAH 178 (342)
Q Consensus 118 ~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~------------------~~g~i~iwd~~~~~~~~~~~~h 178 (342)
+|-++.......+..... ..-..+-..|....++++.-. ...++.+||+.+.+.++++.--
T Consensus 162 lD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg 241 (461)
T PF05694_consen 162 LDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLG 241 (461)
T ss_dssp E-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-
T ss_pred EcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecC
Confidence 888777777766553321 222334444544455554200 2468999999999999888643
Q ss_pred c--CCeeEEEECC--CCCE-EEEEeCCCcEEEEEEcCCCe----eEEEeccC----c-----------CceeEEEEEEec
Q 019349 179 Q--APLAAIVLSS--NGMY-IATASEQGTIIRVFLVSEAT----KSYSFRRG----T-----------YPSTIFSLSFGQ 234 (342)
Q Consensus 179 ~--~~v~~i~~s~--dg~~-lat~s~dg~~irlwd~~~~~----~~~~~~~~----~-----------~~~~v~~l~fs~ 234 (342)
. .....|.|.. +..+ ++.+.-.+++.++|....++ ++.++... . -+.-|+.|.+|.
T Consensus 242 ~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSl 321 (461)
T PF05694_consen 242 EEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISL 321 (461)
T ss_dssp TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-T
T ss_pred CCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEcc
Confidence 2 2355677754 4444 33333444555555545553 22222211 0 023479999999
Q ss_pred CCCcccEEEEEe-CCCcEEEEecCCCCCCC
Q 019349 235 SMQFQDILVATS-SSGSLHVFSPGFAINQR 263 (342)
Q Consensus 235 d~~~~~~l~~~s-~dg~i~vwd~~~~~~~~ 263 (342)
|.+ +|..+. .+|.|+.||+..+..++
T Consensus 322 DDr---fLYvs~W~~GdvrqYDISDP~~Pk 348 (461)
T PF05694_consen 322 DDR---FLYVSNWLHGDVRQYDISDPFNPK 348 (461)
T ss_dssp TS----EEEEEETTTTEEEEEE-SSTTS-E
T ss_pred CCC---EEEEEcccCCcEEEEecCCCCCCc
Confidence 999 666655 58999999999987765
No 395
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=94.19 E-value=2.7 Score=34.62 Aligned_cols=156 Identities=9% Similarity=0.058 Sum_probs=89.0
Q ss_pred CCCeEEEEECCCCcEEEEEecCC-ce--EEEEEcCCeEEEEE--CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCc
Q 019349 73 SPRRLCLFNTTTGTALRELNFLT-SI--LAVRLNKKRLVIVL--REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNA 147 (342)
Q Consensus 73 ~d~~i~iwd~~~~~~~~~~~~~~-~v--~~i~~~~~~~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (342)
....|++||+.+|+.+.+..... .+ -.+.-.++.+...+ ++....||..+.+.+..+.-... -.+++.+..
T Consensus 66 g~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~Ge---GWgLt~d~~- 141 (262)
T COG3823 66 GFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEGE---GWGLTSDDK- 141 (262)
T ss_pred ccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccCCc---ceeeecCCc-
Confidence 36789999999999998876652 22 23444566666666 88999999988877766643322 344554433
Q ss_pred cEEEEeCCCCccEEEEEEccCCceeEEEec--ccC---CeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEecc--
Q 019349 148 CFLAVPASTTKGSVLVYNVMELHSHCEIDA--HQA---PLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRR-- 220 (342)
Q Consensus 148 ~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~--h~~---~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~-- 220 (342)
.|..+. ...+++.-|.++.....++.- ... .++-+.| -||...|--=.+.++. ..|..+|+.+.-+..
T Consensus 142 -~Limsd--GsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~-VdG~lyANVw~t~~I~-rI~p~sGrV~~widlS~ 216 (262)
T COG3823 142 -NLIMSD--GSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEW-VDGELYANVWQTTRIA-RIDPDSGRVVAWIDLSG 216 (262)
T ss_pred -ceEeeC--CceEEEecCHHHhhhcceEEEEECCeecccccceee-eccEEEEeeeeecceE-EEcCCCCcEEEEEEccC
Confidence 344433 234566666655443333221 112 2333444 2566666555554543 456677765543321
Q ss_pred --------CcCceeEEEEEEecCCC
Q 019349 221 --------GTYPSTIFSLSFGQSMQ 237 (342)
Q Consensus 221 --------~~~~~~v~~l~fs~d~~ 237 (342)
..+....+.+|+-|++.
T Consensus 217 L~~~~~~~~~~~nvlNGIA~~~~~~ 241 (262)
T COG3823 217 LLKELNLDKSNDNVLNGIAHDPQQD 241 (262)
T ss_pred CchhcCccccccccccceeecCcCC
Confidence 11122367889888874
No 396
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=94.13 E-value=3 Score=40.59 Aligned_cols=72 Identities=14% Similarity=0.097 Sum_probs=50.0
Q ss_pred CCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEe--cCCCcccEEEEEeCCCcEEEEec
Q 019349 180 APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFG--QSMQFQDILVATSSSGSLHVFSP 256 (342)
Q Consensus 180 ~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs--~d~~~~~~l~~~s~dg~i~vwd~ 256 (342)
.....+.-|.- +.+|.-.++++.+.|||.+.+...++-.- .....|.++.|. ||++ .+++.+-.+.|.+|.-
T Consensus 30 ~~~~li~gss~-~k~a~V~~~~~~LtIWD~~~~~lE~~~~f-~~~~~I~dLDWtst~d~q---siLaVGf~~~v~l~~Q 103 (631)
T PF12234_consen 30 SNPSLISGSSI-KKIAVVDSSRSELTIWDTRSGVLEYEESF-SEDDPIRDLDWTSTPDGQ---SILAVGFPHHVLLYTQ 103 (631)
T ss_pred CCcceEeeccc-CcEEEEECCCCEEEEEEcCCcEEEEeeee-cCCCceeeceeeecCCCC---EEEEEEcCcEEEEEEc
Confidence 34555656653 44666677777789999999886554322 224569999985 6777 6777778889999864
No 397
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=93.82 E-value=4 Score=38.91 Aligned_cols=144 Identities=11% Similarity=0.112 Sum_probs=79.1
Q ss_pred CceEEEEEcCCeEEEEE-----CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCC-----ccEEEEeCCCCccEEEEE
Q 019349 95 TSILAVRLNKKRLVIVL-----REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLN-----ACFLAVPASTTKGSVLVY 164 (342)
Q Consensus 95 ~~v~~i~~~~~~~~~~~-----d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~l~~~~~~~~g~i~iw 164 (342)
+++.+++|.....++.+ .+.+++= +.+.+..|+ -++++++.|- -.+||..- ...|.||
T Consensus 20 HPvhGlaWTDGkqVvLT~L~l~~gE~kfG---ds~viGqFE------hV~GlsW~P~~~~~~paLLAVQH---kkhVtVW 87 (671)
T PF15390_consen 20 HPVHGLAWTDGKQVVLTDLQLHNGEPKFG---DSKVIGQFE------HVHGLSWAPPCTADTPALLAVQH---KKHVTVW 87 (671)
T ss_pred ccccceEecCCCEEEEEeeeeeCCccccC---CccEeeccc------eeeeeeecCcccCCCCceEEEec---cceEEEE
Confidence 36777777544333332 3343332 223344442 2555666553 24677653 5789999
Q ss_pred Ecc-----CCceeEEEeccc-C--C--eeEEEECCCCCEEEEEeCCCcEEEEEEcCCCee--EEEeccCcCceeEEEEEE
Q 019349 165 NVM-----ELHSHCEIDAHQ-A--P--LAAIVLSSNGMYIATASEQGTIIRVFLVSEATK--SYSFRRGTYPSTIFSLSF 232 (342)
Q Consensus 165 d~~-----~~~~~~~~~~h~-~--~--v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~--~~~~~~~~~~~~v~~l~f 232 (342)
.+. +.+.+..-..+- . | -..+.|+|....|+.=..+..-| +++++.... ...+. ..+.|.|.+|
T Consensus 88 qL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV-~~sV~~d~srVkaDi~---~~G~IhCACW 163 (671)
T PF15390_consen 88 QLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSV-LPSVHCDSSRVKADIK---TSGLIHCACW 163 (671)
T ss_pred EeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeE-eeeeeeCCceEEEecc---CCceEEEEEe
Confidence 984 223222221111 1 1 12356999888777655444434 677764332 22231 2456999999
Q ss_pred ecCCCcccEEEEEeCC-CcEEEEecC
Q 019349 233 GQSMQFQDILVATSSS-GSLHVFSPG 257 (342)
Q Consensus 233 s~d~~~~~~l~~~s~d-g~i~vwd~~ 257 (342)
.+||+ .|+++-.. =.-+|||-.
T Consensus 164 T~DG~---RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 164 TKDGQ---RLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred cCcCC---EEEEEeCCeEEEEEecCc
Confidence 99998 77766433 346788743
No 398
>PHA03098 kelch-like protein; Provisional
Probab=93.81 E-value=6.7 Score=37.82 Aligned_cols=190 Identities=8% Similarity=0.065 Sum_probs=85.0
Q ss_pred CeEEEEcCCCCCCCCCCeEEEEECCCCcEEEEEecCC--ceEEEEEcCCeEEEEE--C-----CeEEEEECCCCceeeEE
Q 019349 59 SLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLT--SILAVRLNKKRLVIVL--R-----EKTYIYDANTLAILDTI 129 (342)
Q Consensus 59 ~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~~~~~~--~v~~i~~~~~~~~~~~--d-----~~i~i~d~~~~~~~~~~ 129 (342)
+.+.++||........+.+..+|..+++....-..+. .-.++....+.+++.+ + +.+..||..+.+=.. .
T Consensus 295 ~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~-~ 373 (534)
T PHA03098 295 NVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWRE-E 373 (534)
T ss_pred CEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCceee-C
Confidence 4555555532211123468889988877643222111 1122333345555554 1 357778876643111 1
Q ss_pred eCCCCCc-eEEEEeeCCCccEEEEeCCCCc----cEEEEEEccCCce--eEEEecccCCeeEEEECCCCCEEEEEeCCCc
Q 019349 130 DTVPNLK-GLCAFSPSLNACFLAVPASTTK----GSVLVYNVMELHS--HCEIDAHQAPLAAIVLSSNGMYIATASEQGT 202 (342)
Q Consensus 130 ~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~----g~i~iwd~~~~~~--~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~ 202 (342)
...+.+. ...+... ++...+.+|...+ ..+..||..+.+= +..++...... ++ ...++...+.|+.++.
T Consensus 374 ~~lp~~r~~~~~~~~--~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~-~~-~~~~~~iyv~GG~~~~ 449 (534)
T PHA03098 374 PPLIFPRYNPCVVNV--NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGG-CA-IYHDGKIYVIGGISYI 449 (534)
T ss_pred CCcCcCCccceEEEE--CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCc-eE-EEECCEEEEECCccCC
Confidence 1111111 1222222 3445566663111 4688899876531 11111111111 22 2235667777764321
Q ss_pred -------EEEEEEcCCCeeEEEeccCcC-ceeEEEEEEecCCCcccEEEEEeCC-----CcEEEEecCCC
Q 019349 203 -------IIRVFLVSEATKSYSFRRGTY-PSTIFSLSFGQSMQFQDILVATSSS-----GSLHVFSPGFA 259 (342)
Q Consensus 203 -------~irlwd~~~~~~~~~~~~~~~-~~~v~~l~fs~d~~~~~~l~~~s~d-----g~i~vwd~~~~ 259 (342)
.+..||..+.+-.. +..... ......+. -+++ +++.|+.+ ++|.+||.++.
T Consensus 450 ~~~~~~~~v~~yd~~~~~W~~-~~~~~~~r~~~~~~~--~~~~---iyv~GG~~~~~~~~~v~~yd~~~~ 513 (534)
T PHA03098 450 DNIKVYNIVESYNPVTNKWTE-LSSLNFPRINASLCI--FNNK---IYVVGGDKYEYYINEIEVYDDKTN 513 (534)
T ss_pred CCCcccceEEEecCCCCceee-CCCCCcccccceEEE--ECCE---EEEEcCCcCCcccceeEEEeCCCC
Confidence 14678887664321 111000 11111122 2566 67777654 46788886643
No 399
>PHA02713 hypothetical protein; Provisional
Probab=93.78 E-value=7 Score=37.96 Aligned_cols=189 Identities=7% Similarity=0.023 Sum_probs=88.9
Q ss_pred CCeEEEEcCCCCCCCCCCeEEEEECCCCcEEEEEecCC--ceEEEEEcCCeEEEEE--C-----CeEEEEECCCCc--ee
Q 019349 58 SSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLT--SILAVRLNKKRLVIVL--R-----EKTYIYDANTLA--IL 126 (342)
Q Consensus 58 ~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~~~~~~--~v~~i~~~~~~~~~~~--d-----~~i~i~d~~~~~--~~ 126 (342)
.+.+.++||-......-+.+..+|..+++....-..+. .-.+++...+.+++.+ + ..+..||..+.+ .+
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~ 382 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKML 382 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEEC
Confidence 34555555521111123568889988876432211111 1123334455555544 2 257888876542 11
Q ss_pred eEEeCCCCCceEEEEeeCCCccEEEEeCCCC---------------------ccEEEEEEccCCc--eeEEEecccCCee
Q 019349 127 DTIDTVPNLKGLCAFSPSLNACFLAVPASTT---------------------KGSVLVYNVMELH--SHCEIDAHQAPLA 183 (342)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------------------~g~i~iwd~~~~~--~~~~~~~h~~~v~ 183 (342)
..+.... ....+... ++...+.+|.+. -..+..||..+.+ .+..+........
T Consensus 383 ~~mp~~r--~~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~ 458 (557)
T PHA02713 383 PDMPIAL--SSYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPG 458 (557)
T ss_pred CCCCccc--ccccEEEE--CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccccCc
Confidence 1111111 11112222 345556666421 1357788877653 2222211111111
Q ss_pred EEEECCCCCEEEEEeCCC-----cEEEEEEcCC-Ce--eEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCC--cEEE
Q 019349 184 AIVLSSNGMYIATASEQG-----TIIRVFLVSE-AT--KSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSG--SLHV 253 (342)
Q Consensus 184 ~i~~s~dg~~lat~s~dg-----~~irlwd~~~-~~--~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg--~i~v 253 (342)
.++ -+|+..+.|+.++ ..+..||..+ .+ .+..+... ......+++ +++ +.++|+.++ ++..
T Consensus 459 ~~~--~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~--r~~~~~~~~--~~~---iyv~Gg~~~~~~~e~ 529 (557)
T PHA02713 459 VVS--HKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESR--LSALHTILH--DNT---IMMLHCYESYMLQDT 529 (557)
T ss_pred EEE--ECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcc--cccceeEEE--CCE---EEEEeeecceeehhh
Confidence 222 3567777776542 2245788876 33 22222211 111222222 567 888998888 6777
Q ss_pred EecCCC
Q 019349 254 FSPGFA 259 (342)
Q Consensus 254 wd~~~~ 259 (342)
||+.+.
T Consensus 530 yd~~~~ 535 (557)
T PHA02713 530 FNVYTY 535 (557)
T ss_pred cCcccc
Confidence 776654
No 400
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=93.19 E-value=11 Score=38.17 Aligned_cols=145 Identities=16% Similarity=0.127 Sum_probs=85.0
Q ss_pred CCCeEEEEECCCCcEEEEEecCCceE----------------E-EEEcCCeEEEEE-----------CCeEEEEECCCCc
Q 019349 73 SPRRLCLFNTTTGTALRELNFLTSIL----------------A-VRLNKKRLVIVL-----------REKTYIYDANTLA 124 (342)
Q Consensus 73 ~d~~i~iwd~~~~~~~~~~~~~~~v~----------------~-i~~~~~~~~~~~-----------d~~i~i~d~~~~~ 124 (342)
.|+.|.-.|.++|+....+...+.|. + -.+.++.+++.. .+.|+-+|.++++
T Consensus 268 ~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGk 347 (764)
T TIGR03074 268 SDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGA 347 (764)
T ss_pred CCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCc
Confidence 48889999999999987765433221 0 112344555542 3679999999999
Q ss_pred eeeEEeCCCC-------Cce--------E-EEEeeCCCccEEEEeC----------------CCCccEEEEEEccCCcee
Q 019349 125 ILDTIDTVPN-------LKG--------L-CAFSPSLNACFLAVPA----------------STTKGSVLVYNVMELHSH 172 (342)
Q Consensus 125 ~~~~~~~~~~-------~~~--------~-~~~~~~~~~~~l~~~~----------------~~~~g~i~iwd~~~~~~~ 172 (342)
++..+..... ... . ...+.+++...+..+. ....+.|.-.|.++++..
T Consensus 348 l~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~ 427 (764)
T TIGR03074 348 LVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKER 427 (764)
T ss_pred EeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceE
Confidence 9888754210 000 0 1222233222222210 012466777899999887
Q ss_pred EEEec-cc--------CCeeEEEECC-CCC---EEEEEeCCCcEEEEEEcCCCeeEEEe
Q 019349 173 CEIDA-HQ--------APLAAIVLSS-NGM---YIATASEQGTIIRVFLVSEATKSYSF 218 (342)
Q Consensus 173 ~~~~~-h~--------~~v~~i~~s~-dg~---~lat~s~dg~~irlwd~~~~~~~~~~ 218 (342)
-.++. |. .+..-+.+.. +|+ .++.++.+|.+ .+.|-++|+.+...
T Consensus 428 W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~-~vlDr~tG~~l~~~ 485 (764)
T TIGR03074 428 WVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQI-YVLDRRTGEPIVPV 485 (764)
T ss_pred EEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEE-EEEECCCCCEEeec
Confidence 66653 21 1122233433 664 78899999975 69999999987653
No 401
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=93.02 E-value=5.2 Score=39.02 Aligned_cols=94 Identities=13% Similarity=0.145 Sum_probs=61.2
Q ss_pred CccEEEEEEccCCceeEEEe-cccCCeeEEEEC--CCCCEEEEEeCCCcEEEEEEcC-----C----CeeEEEecc-CcC
Q 019349 157 TKGSVLVYNVMELHSHCEID-AHQAPLAAIVLS--SNGMYIATASEQGTIIRVFLVS-----E----ATKSYSFRR-GTY 223 (342)
Q Consensus 157 ~~g~i~iwd~~~~~~~~~~~-~h~~~v~~i~~s--~dg~~lat~s~dg~~irlwd~~-----~----~~~~~~~~~-~~~ 223 (342)
...++.|||.+.+.....-. ...++|..+.|. |||+.+++-|-...+ .++--. + -..+.++.- ...
T Consensus 49 ~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v-~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T 127 (631)
T PF12234_consen 49 SRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHV-LLYTQLRYDYTNKGPSWAPIRKIDISSHT 127 (631)
T ss_pred CCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEE-EEEEccchhhhcCCcccceeEEEEeecCC
Confidence 35689999998876433222 346789999885 689888888887775 466431 1 123333321 123
Q ss_pred ceeEEEEEEecCCCcccEEEEEeCCCcEEEEec
Q 019349 224 PSTIFSLSFGQSMQFQDILVATSSSGSLHVFSP 256 (342)
Q Consensus 224 ~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~ 256 (342)
+.+|.+..|-++|. |++|+ .+.+.|+|=
T Consensus 128 ~h~Igds~Wl~~G~----LvV~s-GNqlfv~dk 155 (631)
T PF12234_consen 128 PHPIGDSIWLKDGT----LVVGS-GNQLFVFDK 155 (631)
T ss_pred CCCccceeEecCCe----EEEEe-CCEEEEECC
Confidence 45689999999996 55554 357888873
No 402
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=92.95 E-value=7.2 Score=35.59 Aligned_cols=180 Identities=16% Similarity=0.174 Sum_probs=97.4
Q ss_pred CCCeEEEEECCCCcEEEEEecCCceEEE------EEcCCe--EEEEEC-----CeEEEEECCC-CceeeEEeCCCC----
Q 019349 73 SPRRLCLFNTTTGTALRELNFLTSILAV------RLNKKR--LVIVLR-----EKTYIYDANT-LAILDTIDTVPN---- 134 (342)
Q Consensus 73 ~d~~i~iwd~~~~~~~~~~~~~~~v~~i------~~~~~~--~~~~~d-----~~i~i~d~~~-~~~~~~~~~~~~---- 134 (342)
..+-+.++|+. |+.+..+.. +....+ .+.... ++++++ ++|++|.+.. ...+..+.....
T Consensus 76 K~~GL~VYdL~-Gk~lq~~~~-Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~v~~~~~p~~~ 153 (381)
T PF02333_consen 76 KKGGLYVYDLD-GKELQSLPV-GRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTDVTDPAAPIAT 153 (381)
T ss_dssp TTTEEEEEETT-S-EEEEE-S-S-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE-CBTTC-EE-
T ss_pred CCCCEEEEcCC-CcEEEeecC-CCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceEcCCCCccccc
Confidence 46789999985 566666642 333333 344433 345552 4799998753 123333322111
Q ss_pred ----CceEEEEeeCCCccEEEEeCCCCccEEEEEEcc---CC----ceeEEEecccCCeeEEEECCCCCEEEEEeCCCcE
Q 019349 135 ----LKGLCAFSPSLNACFLAVPASTTKGSVLVYNVM---EL----HSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTI 203 (342)
Q Consensus 135 ----~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~---~~----~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~ 203 (342)
+.++|-.....++.+.++... .+|.+..|.+. .+ +.++.|.. .+.+..|+......+|..|=++--
T Consensus 154 ~~~e~yGlcly~~~~~g~~ya~v~~-k~G~~~Qy~L~~~~~g~v~~~lVR~f~~-~sQ~EGCVVDDe~g~LYvgEE~~G- 230 (381)
T PF02333_consen 154 DLSEPYGLCLYRSPSTGALYAFVNG-KDGRVEQYELTDDGDGKVSATLVREFKV-GSQPEGCVVDDETGRLYVGEEDVG- 230 (381)
T ss_dssp SSSSEEEEEEEE-TTT--EEEEEEE-TTSEEEEEEEEE-TTSSEEEEEEEEEE--SS-EEEEEEETTTTEEEEEETTTE-
T ss_pred ccccceeeEEeecCCCCcEEEEEec-CCceEEEEEEEeCCCCcEeeEEEEEecC-CCcceEEEEecccCCEEEecCccE-
Confidence 223333333334555555443 57999998874 22 35666765 347889999998889999988865
Q ss_pred EEEEEcCC-----CeeEEEeccCcCceeEEEEEEe--cCCCcccEEEEEe-CCCcEEEEecCCC
Q 019349 204 IRVFLVSE-----ATKSYSFRRGTYPSTIFSLSFG--QSMQFQDILVATS-SSGSLHVFSPGFA 259 (342)
Q Consensus 204 irlwd~~~-----~~~~~~~~~~~~~~~v~~l~fs--~d~~~~~~l~~~s-~dg~i~vwd~~~~ 259 (342)
|.-|+... ++.+.........+.|-.|++- ++++ .||+++| .+++..||+.+.+
T Consensus 231 IW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~--gYLivSsQG~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 231 IWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGK--GYLIVSSQGDNSFAVYDREGP 292 (381)
T ss_dssp EEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC---EEEEEEEGGGTEEEEEESSTT
T ss_pred EEEEecCCCCCCcceeeecccccccccCccceEEEecCCCC--eEEEEEcCCCCeEEEEecCCC
Confidence 34566641 2333333222223457777774 3443 2666655 4678999997754
No 403
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=92.82 E-value=12 Score=37.80 Aligned_cols=113 Identities=14% Similarity=0.179 Sum_probs=64.8
Q ss_pred CCeEEEEE-CCeEEEEECCCCceeeEEeCCCCCc---------eEEEEe-------------eCCCccEEEEeCCCCccE
Q 019349 104 KKRLVIVL-REKTYIYDANTLAILDTIDTVPNLK---------GLCAFS-------------PSLNACFLAVPASTTKGS 160 (342)
Q Consensus 104 ~~~~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~---------~~~~~~-------------~~~~~~~l~~~~~~~~g~ 160 (342)
.+.+++++ ++.++-.|..+++.+.+++...... ++.-.. +......++... .|+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T--~Dg~ 271 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPT--SDAR 271 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEec--CCCe
Confidence 45556655 6778888888888777764432211 111010 011223555555 5899
Q ss_pred EEEEEccCCceeEEEecccCCee-------------EEEECC--CCCEEEEEeC----------CCcEEEEEEcCCCeeE
Q 019349 161 VLVYNVMELHSHCEIDAHQAPLA-------------AIVLSS--NGMYIATASE----------QGTIIRVFLVSEATKS 215 (342)
Q Consensus 161 i~iwd~~~~~~~~~~~~h~~~v~-------------~i~~s~--dg~~lat~s~----------dg~~irlwd~~~~~~~ 215 (342)
+.-.|.++++..-.+.. .+.|. .+.-+| .+..++.|+. +|. |+-+|+++|+++
T Consensus 272 LiALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~-I~A~Da~TGkl~ 349 (764)
T TIGR03074 272 LIALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGV-IRAFDVNTGALV 349 (764)
T ss_pred EEEEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcE-EEEEECCCCcEe
Confidence 99999999988765532 11110 111112 1345666643 464 689999999999
Q ss_pred EEecc
Q 019349 216 YSFRR 220 (342)
Q Consensus 216 ~~~~~ 220 (342)
.++..
T Consensus 350 W~~~~ 354 (764)
T TIGR03074 350 WAWDP 354 (764)
T ss_pred eEEec
Confidence 88753
No 404
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=92.71 E-value=8.2 Score=35.69 Aligned_cols=192 Identities=15% Similarity=0.126 Sum_probs=84.5
Q ss_pred CCCEEEEEcCCc--EEEEeCCCC----cEEEEEee------CCEE---EEEEcCCCCeEEEEcCCCCCCCCCCeEEEEEC
Q 019349 18 DNSGFALSTKDG--FKIFDSSTG----RLCYERAV------GAFS---IVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNT 82 (342)
Q Consensus 18 d~~~la~g~~~g--~~v~d~~~~----~~~~~~~~------~~~~---~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~ 82 (342)
+.++|++.+-.+ +.|+|+.+. ++....+. .+.. .+-++++++.++.+=++.++ -..+.+.+.|-
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G-~g~Ggf~llD~ 164 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADG-NGPGGFVLLDG 164 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS--S--EEEEE-T
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCC-CCCCcEEEEcC
Confidence 566787776555 566676533 22222211 1111 23345555555544332222 23567888888
Q ss_pred CCCcEEEEEecCC----ceEEEEEcCCeE-EEEE----------------------CCeEEEEECCCCceeeEEeCCCCC
Q 019349 83 TTGTALRELNFLT----SILAVRLNKKRL-VIVL----------------------REKTYIYDANTLAILDTIDTVPNL 135 (342)
Q Consensus 83 ~~~~~~~~~~~~~----~v~~i~~~~~~~-~~~~----------------------d~~i~i~d~~~~~~~~~~~~~~~~ 135 (342)
++.+.+...+... --.++.+++.+. ++.+ .+++.+||+...+.++++......
T Consensus 165 ~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g 244 (461)
T PF05694_consen 165 ETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEG 244 (461)
T ss_dssp TT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTE
T ss_pred ccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCC
Confidence 8877777665422 234555555432 2221 258999999999999999876542
Q ss_pred ceE--EEEeeCCCccEEEEeCCCCccEEEEEEc-cCCc----eeEEEecc-----------------cCCeeEEEECCCC
Q 019349 136 KGL--CAFSPSLNACFLAVPASTTKGSVLVYNV-MELH----SHCEIDAH-----------------QAPLAAIVLSSNG 191 (342)
Q Consensus 136 ~~~--~~~~~~~~~~~l~~~~~~~~g~i~iwd~-~~~~----~~~~~~~h-----------------~~~v~~i~~s~dg 191 (342)
... +-+..+|+..+=+++.. -.++|..|-- ..++ .+..+..- ..-|+.|.+|.|.
T Consensus 245 ~~pLEvRflH~P~~~~gFvg~a-Lss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDD 323 (461)
T PF05694_consen 245 QMPLEVRFLHDPDANYGFVGCA-LSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDD 323 (461)
T ss_dssp EEEEEEEE-SSTT--EEEEEEE---EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS
T ss_pred CceEEEEecCCCCccceEEEEe-ccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCC
Confidence 222 23444554433222111 2345555543 3332 22233211 1347899999999
Q ss_pred CEEEEEeC-CCcEEEEEEcCCC
Q 019349 192 MYIATASE-QGTIIRVFLVSEA 212 (342)
Q Consensus 192 ~~lat~s~-dg~~irlwd~~~~ 212 (342)
++|..+.. +|. +|.||+...
T Consensus 324 rfLYvs~W~~Gd-vrqYDISDP 344 (461)
T PF05694_consen 324 RFLYVSNWLHGD-VRQYDISDP 344 (461)
T ss_dssp -EEEEEETTTTE-EEEEE-SST
T ss_pred CEEEEEcccCCc-EEEEecCCC
Confidence 99988775 565 699999764
No 405
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=92.60 E-value=8 Score=35.25 Aligned_cols=242 Identities=11% Similarity=0.019 Sum_probs=107.6
Q ss_pred EEEEcCCCCEE-EEEcCCcEEEEeCCCCcE--EEEEeeCCEEEEEE--cCCCCeEEEEc---CCCCC------------C
Q 019349 12 FVSFNQDNSGF-ALSTKDGFKIFDSSTGRL--CYERAVGAFSIVEM--LYSSSLLAIVG---AGEQP------------S 71 (342)
Q Consensus 12 ~l~fs~d~~~l-a~g~~~g~~v~d~~~~~~--~~~~~~~~~~~~~~--~~~~~~~~~~~---~g~~~------------~ 71 (342)
....+|+++.+ .+-..+.++--|+++.+. +|.....-.....+ ..+...++-+- ....+ +
T Consensus 85 g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a 164 (386)
T PF14583_consen 85 GGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEA 164 (386)
T ss_dssp T-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC
T ss_pred ceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhh
Confidence 34556777776 455666777788888754 45544333332233 22333332111 11110 0
Q ss_pred CCCCeEEEEECCCCcEEEEEecCCceEEEEEcCC---eEEEEECC-----eEEEEECCC-CceeeEEeCCCCCceEEE-E
Q 019349 72 LSPRRLCLFNTTTGTALRELNFLTSILAVRLNKK---RLVIVLRE-----KTYIYDANT-LAILDTIDTVPNLKGLCA-F 141 (342)
Q Consensus 72 ~~d~~i~iwd~~~~~~~~~~~~~~~v~~i~~~~~---~~~~~~d~-----~i~i~d~~~-~~~~~~~~~~~~~~~~~~-~ 141 (342)
-....|.-.|+++|+....+.-..-+.-+.++|. .++.|.+| .-+||-+.. +...+.+..+.. ...+. =
T Consensus 165 ~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~-~e~~gHE 243 (386)
T PF14583_consen 165 RPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRME-GESVGHE 243 (386)
T ss_dssp ---EEEEEEETTT--EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---T-TEEEEEE
T ss_pred CCCceEEEEECCCCceeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCC-Ccccccc
Confidence 1245577888998887666665556666777664 34445532 236776643 333333322222 12221 1
Q ss_pred eeCCCccEEEEeCC---CCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCC---------------cE
Q 019349 142 SPSLNACFLAVPAS---TTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQG---------------TI 203 (342)
Q Consensus 142 ~~~~~~~~l~~~~~---~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg---------------~~ 203 (342)
-+.+++..+.+-+. ..+..|.-+|+.+++...... ..+....-.++||+++|-=+.|. ..
T Consensus 244 fw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~--~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~ 321 (386)
T PF14583_consen 244 FWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLME--MPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPW 321 (386)
T ss_dssp EE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEE--E-SEEEEEE-TTSSEEEEEE-------------------E
T ss_pred cccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEe--CCceeeeEEcCCCCEEEecCCCCCccccccccceecCCcE
Confidence 23556666655321 135567778888876543222 22345666789999887644442 13
Q ss_pred EEEEEcCCCeeEE--Ee------ccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCC
Q 019349 204 IRVFLVSEATKSY--SF------RRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGF 258 (342)
Q Consensus 204 irlwd~~~~~~~~--~~------~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~ 258 (342)
|.+++++.+.... .. ..+.....=....||||++. .|..+...|...||-++-
T Consensus 322 i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~--VlF~Sd~~G~~~vY~v~i 382 (386)
T PF14583_consen 322 IYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKW--VLFRSDMEGPPAVYLVEI 382 (386)
T ss_dssp EEEEETTTTEEEEEEE-------BTTBSSTT----EE-TTSSE--EEEEE-TTSS-EEEEEE-
T ss_pred EEEeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCE--EEEECCCCCCccEEEEeC
Confidence 5678888776421 11 01111100134789999992 455556678888886553
No 406
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=92.56 E-value=6.9 Score=34.42 Aligned_cols=72 Identities=11% Similarity=0.215 Sum_probs=42.0
Q ss_pred eeEEEECC---CCCEEEEEeCCCcEEEEEEcCCCe--------------eEEEeccCcCceeEEEEEEecCCCcccEEEE
Q 019349 182 LAAIVLSS---NGMYIATASEQGTIIRVFLVSEAT--------------KSYSFRRGTYPSTIFSLSFGQSMQFQDILVA 244 (342)
Q Consensus 182 v~~i~~s~---dg~~lat~s~dg~~irlwd~~~~~--------------~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~ 244 (342)
+..++.+| +|+.|.-..-.+. ++|.+.+.. .+..+ +........++++++|. ++.+
T Consensus 130 ~~gial~~~~~d~r~LYf~~lss~--~ly~v~T~~L~~~~~~~~~~~~~~v~~l--G~k~~~s~g~~~D~~G~---ly~~ 202 (287)
T PF03022_consen 130 IFGIALSPISPDGRWLYFHPLSSR--KLYRVPTSVLRDPSLSDAQALASQVQDL--GDKGSQSDGMAIDPNGN---LYFT 202 (287)
T ss_dssp EEEEEE-TTSTTS-EEEEEETT-S--EEEEEEHHHHCSTT--HHH-HHHT-EEE--EE---SECEEEEETTTE---EEEE
T ss_pred ccccccCCCCCCccEEEEEeCCCC--cEEEEEHHHhhCccccccccccccceec--cccCCCCceEEECCCCc---EEEe
Confidence 66666655 6677777666554 355443211 01111 11112355688899987 8888
Q ss_pred EeCCCcEEEEecCCCC
Q 019349 245 TSSSGSLHVFSPGFAI 260 (342)
Q Consensus 245 ~s~dg~i~vwd~~~~~ 260 (342)
--..+.|..|+..++-
T Consensus 203 ~~~~~aI~~w~~~~~~ 218 (287)
T PF03022_consen 203 DVEQNAIGCWDPDGPY 218 (287)
T ss_dssp ECCCTEEEEEETTTSB
T ss_pred cCCCCeEEEEeCCCCc
Confidence 8899999999987644
No 407
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=92.45 E-value=0.55 Score=27.92 Aligned_cols=31 Identities=16% Similarity=0.188 Sum_probs=23.4
Q ss_pred CCeeEEEECCCC---CEEEEEeCCCcEEEEEEcCC
Q 019349 180 APLAAIVLSSNG---MYIATASEQGTIIRVFLVSE 211 (342)
Q Consensus 180 ~~v~~i~~s~dg---~~lat~s~dg~~irlwd~~~ 211 (342)
++|.++.|||+. .+|+.+-.-|. +.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~-vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGR-VHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCe-EEEEEccc
Confidence 368999999854 47777666666 58999985
No 408
>PHA02713 hypothetical protein; Provisional
Probab=92.40 E-value=11 Score=36.55 Aligned_cols=123 Identities=8% Similarity=0.062 Sum_probs=57.1
Q ss_pred CeEEEEECCCCcEEEEEecCCc--eEEEEEcCCeEEEEEC--------CeEEEEECCCCceeeEEeCCCCCceEEEEeeC
Q 019349 75 RRLCLFNTTTGTALRELNFLTS--ILAVRLNKKRLVIVLR--------EKTYIYDANTLAILDTIDTVPNLKGLCAFSPS 144 (342)
Q Consensus 75 ~~i~iwd~~~~~~~~~~~~~~~--v~~i~~~~~~~~~~~d--------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (342)
..+..||..+++...--..+.+ -.+++...+.+++++. +.+..||..+.+-. .+..-..+..-.+++.-
T Consensus 272 ~~v~~yd~~~~~W~~l~~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~-~~~~m~~~R~~~~~~~~ 350 (557)
T PHA02713 272 PCILVYNINTMEYSVISTIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHV-ELPPMIKNRCRFSLAVI 350 (557)
T ss_pred CCEEEEeCCCCeEEECCCCCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEe-eCCCCcchhhceeEEEE
Confidence 4577889888764432222221 1234444566666542 24777887665211 11110111111122222
Q ss_pred CCccEEEEeCCCC---ccEEEEEEccCCc--eeEEEecccCCeeEEEECCCCCEEEEEeCCC
Q 019349 145 LNACFLAVPASTT---KGSVLVYNVMELH--SHCEIDAHQAPLAAIVLSSNGMYIATASEQG 201 (342)
Q Consensus 145 ~~~~~l~~~~~~~---~g~i~iwd~~~~~--~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg 201 (342)
++...+.+|.+. -..+..||..+.+ .+..+.........+++ +|...+.|+.++
T Consensus 351 -~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~--~g~IYviGG~~~ 409 (557)
T PHA02713 351 -DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVL--DQYIYIIGGRTE 409 (557)
T ss_pred -CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEE--CCEEEEEeCCCc
Confidence 244566666421 1358889987653 22222211111122223 678888887653
No 409
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=92.02 E-value=1 Score=37.91 Aligned_cols=30 Identities=20% Similarity=0.280 Sum_probs=22.1
Q ss_pred EcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEEEE
Q 019349 54 MLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRE 90 (342)
Q Consensus 54 ~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~ 90 (342)
+....++++.++. ++.+++||+.+++.+..
T Consensus 18 l~~~~~~Ll~iT~-------~G~l~vWnl~~~k~~~~ 47 (219)
T PF07569_consen 18 LECNGSYLLAITS-------SGLLYVWNLKKGKAVLP 47 (219)
T ss_pred EEeCCCEEEEEeC-------CCeEEEEECCCCeeccC
Confidence 4455667666664 79999999999887643
No 410
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=91.75 E-value=1.4 Score=25.63 Aligned_cols=33 Identities=9% Similarity=0.130 Sum_probs=24.2
Q ss_pred CCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccC
Q 019349 189 SNGMYIATASEQGTIIRVFLVSEATKSYSFRRG 221 (342)
Q Consensus 189 ~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~ 221 (342)
|++++|.++......|.++|..+++.+.++..+
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg 33 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVG 33 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECC
Confidence 678877776654444679999999888877654
No 411
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=91.38 E-value=9.2 Score=33.38 Aligned_cols=157 Identities=17% Similarity=0.134 Sum_probs=94.5
Q ss_pred cEEEEEecCCceEEEEEcCCeEEEEE-CCeEEEEECCCCcee---eEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEE
Q 019349 86 TALRELNFLTSILAVRLNKKRLVIVL-REKTYIYDANTLAIL---DTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSV 161 (342)
Q Consensus 86 ~~~~~~~~~~~v~~i~~~~~~~~~~~-d~~i~i~d~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i 161 (342)
..+..+..+.-+.++.++++..+++- +.-++|.|+.++... ..+.+. ....++.-+++ +...+.- +.-.
T Consensus 78 ~l~~~i~~~~l~~Dv~vse~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~---gyaygv~vsGn--~aYVadl--ddgf 150 (370)
T COG5276 78 VLLSVINARDLFADVRVSEEYVYVADWSSGLRIVDISTPDSPTLIGFLNTD---GYAYGVYVSGN--YAYVADL--DDGF 150 (370)
T ss_pred ceEEEEehhhhhheeEecccEEEEEcCCCceEEEeccCCCCcceeccccCC---ceEEEEEecCC--EEEEeec--cCcE
Confidence 34556677778899999999999888 568999999876433 333321 22344555554 4333332 3447
Q ss_pred EEEEccCCce---eEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCe---eEEEeccCcCceeEEEEEEecC
Q 019349 162 LVYNVMELHS---HCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEAT---KSYSFRRGTYPSTIFSLSFGQS 235 (342)
Q Consensus 162 ~iwd~~~~~~---~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~---~~~~~~~~~~~~~v~~l~fs~d 235 (342)
.+.|+.+.+. ..........-..+++| |++...+..|+.+ .+-|+.+.. .+.....+ ..++++..+++
T Consensus 151 LivdvsdpssP~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL-~ivDVSnp~sPvli~~~n~g---~g~~sv~vsdn 224 (370)
T COG5276 151 LIVDVSDPSSPQLAGRYALPGGDTHDVAIS--GNYAYVAWRDGGL-TIVDVSNPHSPVLIGSYNTG---PGTYSVSVSDN 224 (370)
T ss_pred EEEECCCCCCceeeeeeccCCCCceeEEEe--cCeEEEEEeCCCe-EEEEccCCCCCeEEEEEecC---CceEEEEecCC
Confidence 7788865542 23333333334566776 5677777778875 699997653 33332211 14788888877
Q ss_pred CCcccEEEEEeCCCcEEEEecCCCC
Q 019349 236 MQFQDILVATSSSGSLHVFSPGFAI 260 (342)
Q Consensus 236 ~~~~~~l~~~s~dg~i~vwd~~~~~ 260 (342)
.. +++...+ -+.+-|...++
T Consensus 225 r~---y~vvy~e--gvlivd~s~~s 244 (370)
T COG5276 225 RA---YLVVYDE--GVLIVDVSGPS 244 (370)
T ss_pred ee---EEEEccc--ceEEEecCCCC
Confidence 65 5554433 35566665554
No 412
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=90.84 E-value=14 Score=34.40 Aligned_cols=130 Identities=15% Similarity=0.180 Sum_probs=76.3
Q ss_pred CCCeEEEEECCCCc-----EEEEEecCCceEEEEEcC-------CeEEEEECCeEEEEECCC--Cc----------eeeE
Q 019349 73 SPRRLCLFNTTTGT-----ALRELNFLTSILAVRLNK-------KRLVIVLREKTYIYDANT--LA----------ILDT 128 (342)
Q Consensus 73 ~d~~i~iwd~~~~~-----~~~~~~~~~~v~~i~~~~-------~~~~~~~d~~i~i~d~~~--~~----------~~~~ 128 (342)
..+.++|++...+. .+.+.++..+|..+...+ ..+++..-+++.||.+.. +. .+.+
T Consensus 45 ~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~~~~L~~~ye 124 (418)
T PF14727_consen 45 YSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGNQYQLELIYE 124 (418)
T ss_pred cccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCcEEEEEEEEE
Confidence 47999999986543 456677788999887632 244555578999998821 11 1111
Q ss_pred EeCCCCCceEEEEeeCC-C-ccEEEEeCCCCccEEEEEEccCCceeEEEec--ccCCeeEEEECCCCCEEEEEeCCCcEE
Q 019349 129 IDTVPNLKGLCAFSPSL-N-ACFLAVPASTTKGSVLVYNVMELHSHCEIDA--HQAPLAAIVLSSNGMYIATASEQGTII 204 (342)
Q Consensus 129 ~~~~~~~~~~~~~~~~~-~-~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~--h~~~v~~i~~s~dg~~lat~s~dg~~i 204 (342)
..........+.-.+.+ . ..+++.-+ .||.+.+++-+.......++. +.+| +.|.+.-..+++++.+..+
T Consensus 125 h~l~~~a~nm~~G~Fgg~~~~~~IcVQS--~DG~L~~feqe~~~f~~~lp~~llPgP---l~Y~~~tDsfvt~sss~~l- 198 (418)
T PF14727_consen 125 HSLQRTAYNMCCGPFGGVKGRDFICVQS--MDGSLSFFEQESFAFSRFLPDFLLPGP---LCYCPRTDSFVTASSSWTL- 198 (418)
T ss_pred EecccceeEEEEEECCCCCCceEEEEEe--cCceEEEEeCCcEEEEEEcCCCCCCcC---eEEeecCCEEEEecCceeE-
Confidence 11111112222222221 1 34666666 699999999776544444443 3344 5677877788888877553
Q ss_pred EEEE
Q 019349 205 RVFL 208 (342)
Q Consensus 205 rlwd 208 (342)
.-+.
T Consensus 199 ~~Yk 202 (418)
T PF14727_consen 199 ECYK 202 (418)
T ss_pred EEec
Confidence 4554
No 413
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=90.51 E-value=18 Score=35.26 Aligned_cols=186 Identities=16% Similarity=0.172 Sum_probs=96.1
Q ss_pred CeEEEEcCCCCCCCCCCeEEEEECCCCcEEEEEecCC--ceEEEEEcCCeEEEEE--C------CeEEEEECCCCc--ee
Q 019349 59 SLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLT--SILAVRLNKKRLVIVL--R------EKTYIYDANTLA--IL 126 (342)
Q Consensus 59 ~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~~~~~~--~v~~i~~~~~~~~~~~--d------~~i~i~d~~~~~--~~ 126 (342)
..+.++||-.+....-+.+..+|..+++.......+. .-.+++..++.+++++ + +.+..||....+ .+
T Consensus 285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~ 364 (571)
T KOG4441|consen 285 GKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPV 364 (571)
T ss_pred CeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCceecc
Confidence 4455555532112234789999999886655443332 4456666677777766 4 367888887653 11
Q ss_pred eEEeCCCCCceEEEEeeCCCccEEEEeCCCCcc-----EEEEEEccCCc--eeEEEecccCCeeEEEECCCCCEEEEEeC
Q 019349 127 DTIDTVPNLKGLCAFSPSLNACFLAVPASTTKG-----SVLVYNVMELH--SHCEIDAHQAPLAAIVLSSNGMYIATASE 199 (342)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g-----~i~iwd~~~~~--~~~~~~~h~~~v~~i~~s~dg~~lat~s~ 199 (342)
..+.......+++.+ ++...|.+|. +| +|..||..+.+ .+..........-.+. -+|...+.||.
T Consensus 365 a~M~~~R~~~~v~~l----~g~iYavGG~--dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~--~~g~iYi~GG~ 436 (571)
T KOG4441|consen 365 APMNTKRSDFGVAVL----DGKLYAVGGF--DGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAV--LGGKLYIIGGG 436 (571)
T ss_pred CCccCccccceeEEE----CCEEEEEecc--ccccccccEEEecCCCCcccccCCCCcceeeeEEEE--ECCEEEEEcCc
Confidence 122221111222222 3456667774 33 46778876654 2221111111122222 36788888887
Q ss_pred CCcE-----EEEEEcCCCeeE--EEeccCcCceeEEEEEEecCCCcccEEEEEeCCCc-----EEEEecCCC
Q 019349 200 QGTI-----IRVFLVSEATKS--YSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGS-----LHVFSPGFA 259 (342)
Q Consensus 200 dg~~-----irlwd~~~~~~~--~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~-----i~vwd~~~~ 259 (342)
++.. +..+|..+.+-. ..+.. +..-..++. -++. +.+.|+.|+. |..||.++.
T Consensus 437 ~~~~~~l~sve~YDP~t~~W~~~~~M~~---~R~~~g~a~-~~~~---iYvvGG~~~~~~~~~VE~ydp~~~ 501 (571)
T KOG4441|consen 437 DGSSNCLNSVECYDPETNTWTLIAPMNT---RRSGFGVAV-LNGK---IYVVGGFDGTSALSSVERYDPETN 501 (571)
T ss_pred CCCccccceEEEEcCCCCceeecCCccc---ccccceEEE-ECCE---EEEECCccCCCccceEEEEcCCCC
Confidence 6542 457787766422 22211 111222333 3455 7888888773 666665543
No 414
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=90.49 E-value=11 Score=32.53 Aligned_cols=115 Identities=12% Similarity=0.032 Sum_probs=65.0
Q ss_pred EEEEeeCCCccEEEEeCC-CCccEEEEEEccCCceeEEE-ecccCCeeEEEECCCCCEEEEEeCCCcEEEEEE-cCCCee
Q 019349 138 LCAFSPSLNACFLAVPAS-TTKGSVLVYNVMELHSHCEI-DAHQAPLAAIVLSSNGMYIATASEQGTIIRVFL-VSEATK 214 (342)
Q Consensus 138 ~~~~~~~~~~~~l~~~~~-~~~g~i~iwd~~~~~~~~~~-~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd-~~~~~~ 214 (342)
+...+.++++..+|+... +....+.++... .....+ .+ ..+..-.|+++|...+....+.. .+++. ..+++.
T Consensus 26 ~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~~g--~~l~~PS~d~~g~~W~v~~~~~~-~~~~~~~~~g~~ 100 (253)
T PF10647_consen 26 VTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVLTG--GSLTRPSWDPDGWVWTVDDGSGG-VRVVRDSASGTG 100 (253)
T ss_pred ccceEECCCCCeEEEEEEcCCCCEEEEEcCC--CcceeeccC--CccccccccCCCCEEEEEcCCCc-eEEEEecCCCcc
Confidence 444455566666655431 023445555433 322222 22 36777789999877766665544 45663 334432
Q ss_pred E-EEeccCcCceeEEEEEEecCCCcccEEEEEe---CCCcEEEEecCCCC
Q 019349 215 S-YSFRRGTYPSTIFSLSFGQSMQFQDILVATS---SSGSLHVFSPGFAI 260 (342)
Q Consensus 215 ~-~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s---~dg~i~vwd~~~~~ 260 (342)
. ...........|..+.+||||. .+|... .++.|.|=-+....
T Consensus 101 ~~~~v~~~~~~~~I~~l~vSpDG~---RvA~v~~~~~~~~v~va~V~r~~ 147 (253)
T PF10647_consen 101 EPVEVDWPGLRGRITALRVSPDGT---RVAVVVEDGGGGRVYVAGVVRDG 147 (253)
T ss_pred eeEEecccccCCceEEEEECCCCc---EEEEEEecCCCCeEEEEEEEeCC
Confidence 2 1221111112799999999998 888777 35778888776543
No 415
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.48 E-value=6.6 Score=36.99 Aligned_cols=79 Identities=15% Similarity=0.234 Sum_probs=51.4
Q ss_pred CeeEEEECCCCCEEEEEeCCCcEEEEEEc----------CCCeeEEEec---------cCcCceeEEEEEEecCCCcccE
Q 019349 181 PLAAIVLSSNGMYIATASEQGTIIRVFLV----------SEATKSYSFR---------RGTYPSTIFSLSFGQSMQFQDI 241 (342)
Q Consensus 181 ~v~~i~~s~dg~~lat~s~dg~~irlwd~----------~~~~~~~~~~---------~~~~~~~v~~l~fs~d~~~~~~ 241 (342)
.|..|..|+.|..+|-++.+|-+| --+ +.|+.....+ .....-.+..++|+|+.-.-..
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~v--MeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~h 182 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMV--MELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPH 182 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEE--EEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCce
Confidence 366788899999999999999543 322 2332221111 0111123677899998611127
Q ss_pred EEEEeCCCcEEEEecCCCCC
Q 019349 242 LVATSSSGSLHVFSPGFAIN 261 (342)
Q Consensus 242 l~~~s~dg~i~vwd~~~~~~ 261 (342)
|..-++|++|+|||+....+
T Consensus 183 L~iL~sdnviRiy~lS~~te 202 (741)
T KOG4460|consen 183 LVLLTSDNVIRIYSLSEPTE 202 (741)
T ss_pred EEEEecCcEEEEEecCCcch
Confidence 88889999999999977654
No 416
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=90.38 E-value=1.9 Score=35.70 Aligned_cols=42 Identities=24% Similarity=0.375 Sum_probs=31.8
Q ss_pred ccEEEEEEccC--CceeEEEecccCCeeEEEECCCCCEEEEEeCC
Q 019349 158 KGSVLVYNVME--LHSHCEIDAHQAPLAAIVLSSNGMYIATASEQ 200 (342)
Q Consensus 158 ~g~i~iwd~~~--~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~d 200 (342)
...|.+|++.+ .+...+|.. -+.|..+.++..|++|+|==++
T Consensus 37 g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k 80 (215)
T PF14761_consen 37 GCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEK 80 (215)
T ss_pred CCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEee
Confidence 36799999983 334556654 3789999999999999996443
No 417
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=90.37 E-value=12 Score=33.10 Aligned_cols=62 Identities=15% Similarity=0.200 Sum_probs=44.7
Q ss_pred cCCCCEEEEEcCCcEEEEeCCC--CcEEEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECC
Q 019349 16 NQDNSGFALSTKDGFKIFDSST--GRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTT 83 (342)
Q Consensus 16 s~d~~~la~g~~~g~~v~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~ 83 (342)
.-++++|+.|+++|+.+.+... .+...-.....+..+.+...-+.++++++ ..+.++.+|+.
T Consensus 10 ~~~~~~lL~GTe~Gly~~~~~~~~~~~~kl~~~~~v~q~~v~~~~~lLi~Lsg------k~~~L~~~~L~ 73 (302)
T smart00036 10 TCDGKWLLVGTEEGLYVLNISDQPGTLEKLIGRRSVTQIWVLEENNVLLMISG------KKPQLYSHPLS 73 (302)
T ss_pred ccCCcEEEEEeCCceEEEEcccCCCCeEEecCcCceEEEEEEhhhCEEEEEeC------CcceEEEEEHH
Confidence 3345689999999987777654 34444444567778888888888888876 35569999973
No 418
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.25 E-value=20 Score=35.39 Aligned_cols=159 Identities=16% Similarity=0.209 Sum_probs=78.4
Q ss_pred EEEEEcCCCCe-EEEEcCCCCCCCCCCeEEEEECCCCcEEEE--Ee---cCCceEEEEEcCCeEEEEE-CCeEE-EEECC
Q 019349 50 SIVEMLYSSSL-LAIVGAGEQPSLSPRRLCLFNTTTGTALRE--LN---FLTSILAVRLNKKRLVIVL-REKTY-IYDAN 121 (342)
Q Consensus 50 ~~~~~~~~~~~-~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~--~~---~~~~v~~i~~~~~~~~~~~-d~~i~-i~d~~ 121 (342)
..+.|-++.+- ++++. .+++++++++- |+.+.. +. ....|..+.+..+++++.. ++++. +.+++
T Consensus 85 ~lI~mgWs~~eeLI~v~-------k~g~v~Vy~~~-ge~ie~~svg~e~~~~~I~ec~~f~~GVavlt~~g~v~~i~~~~ 156 (829)
T KOG2280|consen 85 ELIGMGWSDDEELICVQ-------KDGTVHVYGLL-GEFIESNSVGFESQMSDIVECRFFHNGVAVLTVSGQVILINGVE 156 (829)
T ss_pred CeeeecccCCceEEEEe-------ccceEEEeecc-hhhhcccccccccccCceeEEEEecCceEEEecCCcEEEEcCCC
Confidence 45566665533 33333 48999999974 333332 21 2235666666667776665 56554 44444
Q ss_pred CCceeeEEeC-CCCC---ceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCc-eeEEEecccCCeeEEEECCCCCEEEE
Q 019349 122 TLAILDTIDT-VPNL---KGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELH-SHCEIDAHQAPLAAIVLSSNGMYIAT 196 (342)
Q Consensus 122 ~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~-~~~~~~~h~~~v~~i~~s~dg~~lat 196 (342)
.. .++++.. +.+. ..-.++.++-....+.-... ..| ..++...... ....+....+.+..|.+||+.++||-
T Consensus 157 ~~-~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~-~v~-~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~laL 233 (829)
T KOG2280|consen 157 EP-KLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDV-AVG-LHICQVEESRVQLHALSWPNSSVVKISVSPNRRFLAL 233 (829)
T ss_pred cc-hhhhCCCCCCccCCCcceeEecCCCcceeEEeech-hhh-hcccceecccccccccCCCCceEEEEEEcCCcceEEE
Confidence 32 2222221 1111 11112222111111111110 000 0111111111 11122222355788999999999999
Q ss_pred EeCCCcEEEEEEcCCCeeEEEecc
Q 019349 197 ASEQGTIIRVFLVSEATKSYSFRR 220 (342)
Q Consensus 197 ~s~dg~~irlwd~~~~~~~~~~~~ 220 (342)
=..+|. |.+-+....+++.++..
T Consensus 234 yt~~G~-i~~vs~D~~~~lce~~~ 256 (829)
T KOG2280|consen 234 YTETGK-IWVVSIDLSQILCEFNC 256 (829)
T ss_pred EecCCc-EEEEecchhhhhhccCC
Confidence 888897 46778777777777753
No 419
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=89.87 E-value=13 Score=32.81 Aligned_cols=145 Identities=14% Similarity=0.186 Sum_probs=68.2
Q ss_pred ceEEEEEcCCeEEEEECCeEEEEECCCCceeeEEeCC----CCCceEEEEeeCCCccEEEEeCCCCccEEEEEEcc-CCc
Q 019349 96 SILAVRLNKKRLVIVLREKTYIYDANTLAILDTIDTV----PNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVM-ELH 170 (342)
Q Consensus 96 ~v~~i~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~-~~~ 170 (342)
...+|.+..+...++.+.-+.+.....++.=..+... ..+..+.++ +++...++.. .|. ||... .++
T Consensus 63 ~l~~I~f~~~~g~ivG~~g~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l---~~~~~~l~~~---~G~--iy~T~DgG~ 134 (302)
T PF14870_consen 63 HLNSISFDGNEGWIVGEPGLLLHTTDGGKTWERVPLSSKLPGSPFGITAL---GDGSAELAGD---RGA--IYRTTDGGK 134 (302)
T ss_dssp EEEEEEEETTEEEEEEETTEEEEESSTTSS-EE----TT-SS-EEEEEEE---ETTEEEEEET---T----EEEESSTTS
T ss_pred eEEEEEecCCceEEEcCCceEEEecCCCCCcEEeecCCCCCCCeeEEEEc---CCCcEEEEcC---CCc--EEEeCCCCC
Confidence 3567777777766766555555555555433333221 112222222 2222333322 343 33332 232
Q ss_pred eeE-EEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCC
Q 019349 171 SHC-EIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSG 249 (342)
Q Consensus 171 ~~~-~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg 249 (342)
.=. ....-...+..+..++||+++++++ .|.+++-||--... -....+. ....|.+|.|+|++. +.+ ....|
T Consensus 135 tW~~~~~~~~gs~~~~~r~~dG~~vavs~-~G~~~~s~~~G~~~-w~~~~r~-~~~riq~~gf~~~~~---lw~-~~~Gg 207 (302)
T PF14870_consen 135 TWQAVVSETSGSINDITRSSDGRYVAVSS-RGNFYSSWDPGQTT-WQPHNRN-SSRRIQSMGFSPDGN---LWM-LARGG 207 (302)
T ss_dssp SEEEEE-S----EEEEEE-TTS-EEEEET-TSSEEEEE-TT-SS--EEEE---SSS-EEEEEE-TTS----EEE-EETTT
T ss_pred CeeEcccCCcceeEeEEECCCCcEEEEEC-cccEEEEecCCCcc-ceEEccC-ccceehhceecCCCC---EEE-EeCCc
Confidence 211 1233446788899999999888875 67776677753211 1112222 234699999999987 444 55888
Q ss_pred cEEEEe
Q 019349 250 SLHVFS 255 (342)
Q Consensus 250 ~i~vwd 255 (342)
.|++=+
T Consensus 208 ~~~~s~ 213 (302)
T PF14870_consen 208 QIQFSD 213 (302)
T ss_dssp EEEEEE
T ss_pred EEEEcc
Confidence 888877
No 420
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=89.68 E-value=23 Score=35.19 Aligned_cols=72 Identities=11% Similarity=0.278 Sum_probs=48.7
Q ss_pred CeeEEEECC--CCCEEEEEeCCCcEEEEEEcCCCe--------------------eEEEeccCcCceeEEEEEEe--cCC
Q 019349 181 PLAAIVLSS--NGMYIATASEQGTIIRVFLVSEAT--------------------KSYSFRRGTYPSTIFSLSFG--QSM 236 (342)
Q Consensus 181 ~v~~i~~s~--dg~~lat~s~dg~~irlwd~~~~~--------------------~~~~~~~~~~~~~v~~l~fs--~d~ 236 (342)
.|+.|.+.. +...|+.|.+||.+ -+|.+++-. +...++ -+..+++++++ ...
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V-~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~---v~~SaWGLdIh~~~~~ 177 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDV-LAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR---VGASAWGLDIHDYKKS 177 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeE-EEEEHHHHHHHHHhhccccccccccccCCCCeEee---cCCceeEEEEEecCcc
Confidence 477776654 44679999999986 499662110 011111 12358999998 777
Q ss_pred CcccEEEEEeCCCcEEEEecCCC
Q 019349 237 QFQDILVATSSSGSLHVFSPGFA 259 (342)
Q Consensus 237 ~~~~~l~~~s~dg~i~vwd~~~~ 259 (342)
+ +||+++....|.||-....
T Consensus 178 r---lIAVSsNs~~VTVFaf~l~ 197 (717)
T PF08728_consen 178 R---LIAVSSNSQEVTVFAFALV 197 (717)
T ss_pred e---EEEEecCCceEEEEEEecc
Confidence 7 8999998888999987653
No 421
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=89.43 E-value=4.1 Score=37.74 Aligned_cols=80 Identities=16% Similarity=0.189 Sum_probs=52.9
Q ss_pred EEEEeeCCCccEEEEeCCCCccEEEEEEccCCceeEEEecccCC-eeEEEECCC-----------------CCE-EEEEe
Q 019349 138 LCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAP-LAAIVLSSN-----------------GMY-IATAS 198 (342)
Q Consensus 138 ~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~-v~~i~~s~d-----------------g~~-lat~s 198 (342)
...++.+|++.+.|+.. .-|.|.++|+.++..++.+++..+. +--+....+ ..+ ++-+-
T Consensus 310 ~~~i~~sP~~~laA~tD--slGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyap 387 (415)
T PF14655_consen 310 GESICLSPSGRLAAVTD--SLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAP 387 (415)
T ss_pred EEEEEECCCCCEEEEEc--CCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEec
Confidence 45677788888888775 5799999999999888877765432 111111111 122 33445
Q ss_pred CCCcEEEEEEcCCCeeEEEecc
Q 019349 199 EQGTIIRVFLVSEATKSYSFRR 220 (342)
Q Consensus 199 ~dg~~irlwd~~~~~~~~~~~~ 220 (342)
..| ++.||++++|.++..+.-
T Consensus 388 rRg-~lEvW~~~~g~Rv~a~~v 408 (415)
T PF14655_consen 388 RRG-ILEVWSMRQGPRVAAFNV 408 (415)
T ss_pred cCC-eEEEEecCCCCEEEEEEe
Confidence 566 578999999988887753
No 422
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=89.13 E-value=2.4 Score=24.56 Aligned_cols=40 Identities=15% Similarity=0.060 Sum_probs=26.1
Q ss_pred CccEEEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEE
Q 019349 146 NACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVL 187 (342)
Q Consensus 146 ~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~ 187 (342)
++..|.++.. .+++|.++|..+++.+..+..-.. -..++|
T Consensus 2 d~~~lyv~~~-~~~~v~~id~~~~~~~~~i~vg~~-P~~i~~ 41 (42)
T TIGR02276 2 DGTKLYVTNS-GSNTVSVIDTATNKVIATIPVGGY-PFGVAV 41 (42)
T ss_pred CCCEEEEEeC-CCCEEEEEECCCCeEEEEEECCCC-CceEEe
Confidence 4455555554 578999999999888877765322 234444
No 423
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=88.81 E-value=4.9 Score=37.22 Aligned_cols=42 Identities=17% Similarity=0.245 Sum_probs=33.3
Q ss_pred cccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEec
Q 019349 177 AHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFR 219 (342)
Q Consensus 177 ~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~ 219 (342)
.....+.+|+.+|++++.|+...=|+++ |+|+.++..+.-++
T Consensus 305 D~~R~~~~i~~sP~~~laA~tDslGRV~-LiD~~~~~vvrmWK 346 (415)
T PF14655_consen 305 DSKREGESICLSPSGRLAAVTDSLGRVL-LIDVARGIVVRMWK 346 (415)
T ss_pred cCCceEEEEEECCCCCEEEEEcCCCcEE-EEECCCChhhhhhc
Confidence 3345688999999999888877778865 99999988766553
No 424
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=88.77 E-value=8.9 Score=29.25 Aligned_cols=97 Identities=12% Similarity=0.070 Sum_probs=52.4
Q ss_pred CCeEEEEECC--------CCcEEEEEecCCceEEEEE-------cCCeEEEEECCeEEEEECCCCceeeEEeCCCCCceE
Q 019349 74 PRRLCLFNTT--------TGTALRELNFLTSILAVRL-------NKKRLVIVLREKTYIYDANTLAILDTIDTVPNLKGL 138 (342)
Q Consensus 74 d~~i~iwd~~--------~~~~~~~~~~~~~v~~i~~-------~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~ 138 (342)
-++|.|.+.. ....+..+.+...|++++- .++-+++.+...+..||+....-+...+.+.....+
T Consensus 19 ~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~t~llaYDV~~N~d~Fyke~~DGvn~i 98 (136)
T PF14781_consen 19 GGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQTSLLAYDVENNSDLFYKEVPDGVNAI 98 (136)
T ss_pred CCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEeccceEEEEEcccCchhhhhhCccceeEE
Confidence 3566666654 3345666777778887754 246677788999999999765443322222222122
Q ss_pred EEEeeCCCccEEEEeCCCCccEEEEEEccCCcee
Q 019349 139 CAFSPSLNACFLAVPASTTKGSVLVYNVMELHSH 172 (342)
Q Consensus 139 ~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~ 172 (342)
+.=.......-++..| .+-.|+-||..-.+..
T Consensus 99 ~~g~~~~~~~~l~ivG--Gncsi~Gfd~~G~e~f 130 (136)
T PF14781_consen 99 VIGKLGDIPSPLVIVG--GNCSIQGFDYEGNEIF 130 (136)
T ss_pred EEEecCCCCCcEEEEC--ceEEEEEeCCCCcEEE
Confidence 2111222122334444 2466777775544433
No 425
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.72 E-value=9.3 Score=39.95 Aligned_cols=132 Identities=17% Similarity=0.214 Sum_probs=82.5
Q ss_pred CCeEEEEECCCCcEEEEEec-CCceEEEEEc---C--------CeEEEEECCeEEEEECCCCc-------eeeEEeCCCC
Q 019349 74 PRRLCLFNTTTGTALRELNF-LTSILAVRLN---K--------KRLVIVLREKTYIYDANTLA-------ILDTIDTVPN 134 (342)
Q Consensus 74 d~~i~iwd~~~~~~~~~~~~-~~~v~~i~~~---~--------~~~~~~~d~~i~i~d~~~~~-------~~~~~~~~~~ 134 (342)
|+.+.+|+..++.....+.. .+.|..+.+- | ..+++++--.|.++-+.-.+ ....+.....
T Consensus 98 Dn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~~d 177 (1311)
T KOG1900|consen 98 DNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKISVD 177 (1311)
T ss_pred CCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeeecC
Confidence 79999999998766666543 4466666542 2 24556666777777553211 1112233344
Q ss_pred CceEEEEeeCCCccEEEEeCCCCccEEEEEEcc----CC-------c-------------eeEEEe-cccCCeeEEEECC
Q 019349 135 LKGLCAFSPSLNACFLAVPASTTKGSVLVYNVM----EL-------H-------------SHCEID-AHQAPLAAIVLSS 189 (342)
Q Consensus 135 ~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~----~~-------~-------------~~~~~~-~h~~~v~~i~~s~ 189 (342)
+..+.++....+|+. +.+| .|| .+|.+. .+ + .+..+. .+..+|..|++..
T Consensus 178 g~~V~~I~~t~nGRI-F~~G--~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~ 252 (1311)
T KOG1900|consen 178 GVSVNCITYTENGRI-FFAG--RDG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDN 252 (1311)
T ss_pred CceEEEEEeccCCcE-EEee--cCC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecc
Confidence 556667775556654 4556 356 555541 11 0 011233 5788999999998
Q ss_pred CCCEEEEEeCCCcEEEEEEcCC
Q 019349 190 NGMYIATASEQGTIIRVFLVSE 211 (342)
Q Consensus 190 dg~~lat~s~dg~~irlwd~~~ 211 (342)
.-+.|.+=++.|+ |++||+..
T Consensus 253 SR~IlY~lsek~~-v~~Y~i~~ 273 (1311)
T KOG1900|consen 253 SRNILYVLSEKGT-VSAYDIGG 273 (1311)
T ss_pred ccceeeeeccCce-EEEEEccC
Confidence 8889999999987 69999975
No 426
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=88.67 E-value=3.6 Score=34.58 Aligned_cols=67 Identities=21% Similarity=0.294 Sum_probs=46.2
Q ss_pred ECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEe------ccC------cCceeEEEEEEecCCCcccEEEEEeCCCcEEEE
Q 019349 187 LSSNGMYIATASEQGTIIRVFLVSEATKSYSF------RRG------TYPSTIFSLSFGQSMQFQDILVATSSSGSLHVF 254 (342)
Q Consensus 187 ~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~------~~~------~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vw 254 (342)
+..++++|+.-..+|.+ ++||+.+++.+..- -.. .....|..+.++.+|. -|++ -.+|..+.|
T Consensus 18 l~~~~~~Ll~iT~~G~l-~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~---PiV~-lsng~~y~y 92 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLL-YVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGV---PIVT-LSNGDSYSY 92 (219)
T ss_pred EEeCCCEEEEEeCCCeE-EEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCC---EEEE-EeCCCEEEe
Confidence 44568889999999975 79999998764322 010 1234588899998886 4444 445788999
Q ss_pred ecCC
Q 019349 255 SPGF 258 (342)
Q Consensus 255 d~~~ 258 (342)
+.+-
T Consensus 93 ~~~L 96 (219)
T PF07569_consen 93 SPDL 96 (219)
T ss_pred cccc
Confidence 8653
No 427
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=88.44 E-value=9.4 Score=29.12 Aligned_cols=120 Identities=15% Similarity=0.149 Sum_probs=66.6
Q ss_pred EEECCCCCEEEEEeCCCcEEEEEEcCCCe--------eEEEeccCcCceeEEEEE---EecCCCcccEEEEEeCCCcEEE
Q 019349 185 IVLSSNGMYIATASEQGTIIRVFLVSEAT--------KSYSFRRGTYPSTIFSLS---FGQSMQFQDILVATSSSGSLHV 253 (342)
Q Consensus 185 i~~s~dg~~lat~s~dg~~irlwd~~~~~--------~~~~~~~~~~~~~v~~l~---fs~d~~~~~~l~~~s~dg~i~v 253 (342)
-.|......|+.++.-|+++ |++..... .+..+.- ...|++|+ |.|+.. .+.|+.|+. .++-.
T Consensus 4 GkfDG~~pcL~~aT~~gKV~-IH~ph~~~~~~~~~~~~i~~LNi---n~~italaaG~l~~~~~-~D~LliGt~-t~lla 77 (136)
T PF14781_consen 4 GKFDGVHPCLACATTGGKVF-IHNPHERGQRTGRQDSDISFLNI---NQEITALAAGRLKPDDG-RDCLLIGTQ-TSLLA 77 (136)
T ss_pred EEeCCCceeEEEEecCCEEE-EECCCccccccccccCceeEEEC---CCceEEEEEEecCCCCC-cCEEEEecc-ceEEE
Confidence 35666666788888778764 88765332 2233322 12366664 443322 247777765 48999
Q ss_pred EecCCCCCCCCCCCcccccccccccccccc-ccccccceeeeccCCCccccEEEEEEeCCcEEEEEEecCCCCeeeeEEE
Q 019349 254 FSPGFAINQRRGGRTSSILGSILPESVNEV-LDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSINNCCESTWTLD 332 (342)
Q Consensus 254 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~~~~~~~~~~~~~~~ 332 (342)
||+..+...-..+ .++.+.++ +. .++.....|+.++++-.|+-|+ .++.|..|.++
T Consensus 78 YDV~~N~d~Fyke---------~~DGvn~i~~g-----------~~~~~~~~l~ivGGncsi~Gfd---~~G~e~fWtVt 134 (136)
T PF14781_consen 78 YDVENNSDLFYKE---------VPDGVNAIVIG-----------KLGDIPSPLVIVGGNCSIQGFD---YEGNEIFWTVT 134 (136)
T ss_pred EEcccCchhhhhh---------CccceeEEEEE-----------ecCCCCCcEEEECceEEEEEeC---CCCcEEEEEec
Confidence 9998876532111 12211111 10 0112225677888888887774 56778888776
Q ss_pred e
Q 019349 333 R 333 (342)
Q Consensus 333 ~ 333 (342)
+
T Consensus 135 g 135 (136)
T PF14781_consen 135 G 135 (136)
T ss_pred c
Confidence 4
No 428
>PHA03098 kelch-like protein; Provisional
Probab=88.36 E-value=25 Score=33.90 Aligned_cols=150 Identities=11% Similarity=0.045 Sum_probs=67.5
Q ss_pred CeEEEEcCCCCCCCCCCeEEEEECCCCcEEEEEecCC--ceEEEEEcCCeEEEEEC--------CeEEEEECCCCceeeE
Q 019349 59 SLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLT--SILAVRLNKKRLVIVLR--------EKTYIYDANTLAILDT 128 (342)
Q Consensus 59 ~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~~~~~~--~v~~i~~~~~~~~~~~d--------~~i~i~d~~~~~~~~~ 128 (342)
+.+.++||.... ..-+.+..||..+++....-..+. .-.++....+.+++.+. +.+..||..+.+=...
T Consensus 343 ~~lyv~GG~~~~-~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~ 421 (534)
T PHA03098 343 NRIYVIGGIYNS-ISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKG 421 (534)
T ss_pred CEEEEEeCCCCC-EecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeec
Confidence 445555553211 123568889988776543222221 11223334555655541 3578888876421111
Q ss_pred EeCCCCCceEEEEeeCCCccEEEEeCCCCc------cEEEEEEccCCc--eeEEEecccCCeeEEEECCCCCEEEEEeCC
Q 019349 129 IDTVPNLKGLCAFSPSLNACFLAVPASTTK------GSVLVYNVMELH--SHCEIDAHQAPLAAIVLSSNGMYIATASEQ 200 (342)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------g~i~iwd~~~~~--~~~~~~~h~~~v~~i~~s~dg~~lat~s~d 200 (342)
-..+....+..+... ++...+.+|.... ..+.+||..+.+ .+..+.........+.+ +++.++.|+.+
T Consensus 422 ~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~ 497 (534)
T PHA03098 422 SPLPISHYGGCAIYH--DGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDK 497 (534)
T ss_pred CCCCccccCceEEEE--CCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCc
Confidence 011111112222222 2345555553211 238888987654 12111111111122223 66777777654
Q ss_pred C----cEEEEEEcCCCe
Q 019349 201 G----TIIRVFLVSEAT 213 (342)
Q Consensus 201 g----~~irlwd~~~~~ 213 (342)
+ ..+.++|..+.+
T Consensus 498 ~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 498 YEYYINEIEVYDDKTNT 514 (534)
T ss_pred CCcccceeEEEeCCCCE
Confidence 2 124567766543
No 429
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=88.32 E-value=33 Score=35.31 Aligned_cols=137 Identities=17% Similarity=0.178 Sum_probs=75.8
Q ss_pred eEEEEECCCCceeeEEeCCCCC--ceEE--EEeeCCCccEEEEeCCC---------CccEEEEEEc-cCCceeEEEec--
Q 019349 114 KTYIYDANTLAILDTIDTVPNL--KGLC--AFSPSLNACFLAVPAST---------TKGSVLVYNV-MELHSHCEIDA-- 177 (342)
Q Consensus 114 ~i~i~d~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~~l~~~~~~---------~~g~i~iwd~-~~~~~~~~~~~-- 177 (342)
.|+++|..+++.+..+....+. ..++ .++.++...+++++... .+|.++.|++ +.++.+.-+..
T Consensus 854 ~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~ 933 (1205)
T KOG1898|consen 854 SIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTE 933 (1205)
T ss_pred eEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccC
Confidence 3778887777766666544441 2223 33334444344443210 2456777775 34443322211
Q ss_pred ccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecC
Q 019349 178 HQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPG 257 (342)
Q Consensus 178 h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~ 257 (342)
-..+|. ++.|-..++.+|- |..+|++|+-..+++.......-+..|.++.+. +. .+++|...-.|+++..+
T Consensus 934 ~~~~v~--Ai~~f~~~~Lagv--G~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~--~~---RI~VgD~qeSV~~~~y~ 1004 (1205)
T KOG1898|consen 934 IPGPVG--AICPFQGRVLAGV--GRFLRLYDLGKKKLLRKCELKFIPNRISSIQTY--GA---RIVVGDIQESVHFVRYR 1004 (1205)
T ss_pred CCccce--EEeccCCEEEEec--ccEEEEeeCChHHHHhhhhhccCceEEEEEeec--ce---EEEEeeccceEEEEEEe
Confidence 123343 4456555666654 345799999877766554433335557777765 34 68888877788777655
Q ss_pred CC
Q 019349 258 FA 259 (342)
Q Consensus 258 ~~ 259 (342)
..
T Consensus 1005 ~~ 1006 (1205)
T KOG1898|consen 1005 RE 1006 (1205)
T ss_pred cC
Confidence 43
No 430
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=87.96 E-value=35 Score=35.16 Aligned_cols=172 Identities=14% Similarity=0.125 Sum_probs=101.8
Q ss_pred eEEEEECCCCcEEEEEecCC-----ceEEEEEcC--Ce-EEEE-------------ECCeEEEEECC-CCceeeEEeCCC
Q 019349 76 RLCLFNTTTGTALRELNFLT-----SILAVRLNK--KR-LVIV-------------LREKTYIYDAN-TLAILDTIDTVP 133 (342)
Q Consensus 76 ~i~iwd~~~~~~~~~~~~~~-----~v~~i~~~~--~~-~~~~-------------~d~~i~i~d~~-~~~~~~~~~~~~ 133 (342)
.|++.|..+++.+..+.+.. .+..+.|+. +. +..+ +++.++.|++- +++.+.-+....
T Consensus 854 ~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~ 933 (1205)
T KOG1898|consen 854 SIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTE 933 (1205)
T ss_pred eEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccC
Confidence 58999999888887776543 345555532 22 1111 13457788773 344333222222
Q ss_pred CCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCceeEEE--ecccCCeeEEEECCCCCEEEEEeCCCcEE-EEEEcC
Q 019349 134 NLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEI--DAHQAPLAAIVLSSNGMYIATASEQGTII-RVFLVS 210 (342)
Q Consensus 134 ~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~--~~h~~~v~~i~~s~dg~~lat~s~dg~~i-rlwd~~ 210 (342)
-+..+.++++..+ ..|+..| ..+++||+...++++.. +.-...|+.+.+. +..++.|.....+. -.|+-.
T Consensus 934 ~~~~v~Ai~~f~~-~~LagvG----~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~--~~RI~VgD~qeSV~~~~y~~~ 1006 (1205)
T KOG1898|consen 934 IPGPVGAICPFQG-RVLAGVG----RFLRLYDLGKKKLLRKCELKFIPNRISSIQTY--GARIVVGDIQESVHFVRYRRE 1006 (1205)
T ss_pred CCccceEEeccCC-EEEEecc----cEEEEeeCChHHHHhhhhhccCceEEEEEeec--ceEEEEeeccceEEEEEEecC
Confidence 2344667777654 5555544 57999999877765433 2234567777764 56777775444432 234433
Q ss_pred CCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCC
Q 019349 211 EATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFA 259 (342)
Q Consensus 211 ~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~ 259 (342)
++.+..+.....+..|+++.+-..+. +|.+..-|.+.+-.+...
T Consensus 1007 -~n~l~~fadD~~pR~Vt~~~~lD~~t----vagaDrfGNi~~vR~P~d 1050 (1205)
T KOG1898|consen 1007 -DNQLIVFADDPVPRHVTALELLDYDT----VAGADRFGNIAVVRIPPD 1050 (1205)
T ss_pred -CCeEEEEeCCCccceeeEEEEecCCc----eeeccccCcEEEEECCCc
Confidence 44555564443445588877766664 888888889888877544
No 431
>KOG2109 consensus WD40 repeat protein [General function prediction only]
Probab=87.87 E-value=0.44 Score=45.52 Aligned_cols=85 Identities=21% Similarity=0.349 Sum_probs=59.7
Q ss_pred EEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEecc----------CcCceeEEEE
Q 019349 161 VLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRR----------GTYPSTIFSL 230 (342)
Q Consensus 161 i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~----------~~~~~~v~~l 230 (342)
+.+=|..+...+..+++|+.++..++|.+.|..|++++-.|.-|.++.+ ...+.+... +....-+..+
T Consensus 297 vivkdf~S~a~i~QfkAhkspiSaLcfdqsgsllViasi~g~nVnvfRi--met~~t~~~~~qs~~~s~ra~t~aviqdi 374 (788)
T KOG2109|consen 297 VIVKDFDSFADIRQFKAHKSPISALCFDQSGSLLVIASITGRNVNVFRI--METVCTVNVSDQSLVVSPRANTAAVIQDI 374 (788)
T ss_pred EEeecccchhhhhheeeecCcccccccccCceEEEEEeeccceeeeEEe--ccccccccccccccccchhcchHHHHHHH
Confidence 5555667777778899999999999999999999999999975544443 332222211 1111225567
Q ss_pred EEecCCCcccEEEEEeCCCc
Q 019349 231 SFGQSMQFQDILVATSSSGS 250 (342)
Q Consensus 231 ~fs~d~~~~~~l~~~s~dg~ 250 (342)
+|+.... +++.+|-+|+
T Consensus 375 cfs~~s~---~r~~gsc~Ge 391 (788)
T KOG2109|consen 375 CFSEVST---IRTAGSCEGE 391 (788)
T ss_pred hhhhhcc---eEeecccCCC
Confidence 8888888 8888887764
No 432
>PRK13684 Ycf48-like protein; Provisional
Probab=87.64 E-value=21 Score=32.17 Aligned_cols=148 Identities=11% Similarity=0.084 Sum_probs=77.7
Q ss_pred ceEEEEEcCCeEEEEE--CCeEEEEECCCC-ceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCcee
Q 019349 96 SILAVRLNKKRLVIVL--REKTYIYDANTL-AILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSH 172 (342)
Q Consensus 96 ~v~~i~~~~~~~~~~~--d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~ 172 (342)
.+.++.+.++..+++. .+.++. ...++ +.-..+.. .....+.++...+++..++++. .|.+.+=....+..-
T Consensus 174 ~~~~i~~~~~g~~v~~g~~G~i~~-s~~~gg~tW~~~~~-~~~~~l~~i~~~~~g~~~~vg~---~G~~~~~s~d~G~sW 248 (334)
T PRK13684 174 VVRNLRRSPDGKYVAVSSRGNFYS-TWEPGQTAWTPHQR-NSSRRLQSMGFQPDGNLWMLAR---GGQIRFNDPDDLESW 248 (334)
T ss_pred eEEEEEECCCCeEEEEeCCceEEE-EcCCCCCeEEEeeC-CCcccceeeeEcCCCCEEEEec---CCEEEEccCCCCCcc
Confidence 5677777777655544 343332 22222 22222222 2223455666666666665543 465543223333322
Q ss_pred EEEec----ccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEecc-CcCceeEEEEEEecCCCcccEEEEEeC
Q 019349 173 CEIDA----HQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRR-GTYPSTIFSLSFGQSMQFQDILVATSS 247 (342)
Q Consensus 173 ~~~~~----h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~-~~~~~~v~~l~fs~d~~~~~~l~~~s~ 247 (342)
..... -...+..+.+.+++..++ ++.+|.+ +.....|+.-...+. ...+...+.+.|..+++ ....+.
T Consensus 249 ~~~~~~~~~~~~~l~~v~~~~~~~~~~-~G~~G~v--~~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~----~~~~G~ 321 (334)
T PRK13684 249 SKPIIPEITNGYGYLDLAYRTPGEIWA-GGGNGTL--LVSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEK----GFVLGQ 321 (334)
T ss_pred ccccCCccccccceeeEEEcCCCCEEE-EcCCCeE--EEeCCCCCCCeECCcCCCCCcceEEEEEeCCCc----eEEECC
Confidence 21111 123578899999887555 4567753 455555554333321 11234578888887776 455677
Q ss_pred CCcEEEEe
Q 019349 248 SGSLHVFS 255 (342)
Q Consensus 248 dg~i~vwd 255 (342)
.|.|--|+
T Consensus 322 ~G~il~~~ 329 (334)
T PRK13684 322 RGVLLRYV 329 (334)
T ss_pred CceEEEec
Confidence 88887775
No 433
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=86.96 E-value=24 Score=32.19 Aligned_cols=61 Identities=8% Similarity=0.140 Sum_probs=36.0
Q ss_pred cCCeeEEEECCCCCEEEEEeCC-------------------CcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcc
Q 019349 179 QAPLAAIVLSSNGMYIATASEQ-------------------GTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQ 239 (342)
Q Consensus 179 ~~~v~~i~~s~dg~~lat~s~d-------------------g~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~ 239 (342)
....+.++|.|||.+.++-+.. |.++ -+|...++ +..+..+ ......++|+|++.
T Consensus 123 ~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~-r~~pdg~~-~e~~a~G--~rnp~Gl~~d~~G~-- 196 (367)
T TIGR02604 123 HHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLF-RYNPDGGK-LRVVAHG--FQNPYGHSVDSWGD-- 196 (367)
T ss_pred cccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEE-EEecCCCe-EEEEecC--cCCCccceECCCCC--
Confidence 3457889999999876655521 3332 34444333 2333222 22357899999998
Q ss_pred cEEEEEe
Q 019349 240 DILVATS 246 (342)
Q Consensus 240 ~~l~~~s 246 (342)
++++-.
T Consensus 197 -l~~tdn 202 (367)
T TIGR02604 197 -VFFCDN 202 (367)
T ss_pred -EEEEcc
Confidence 665544
No 434
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=86.95 E-value=18 Score=30.62 Aligned_cols=44 Identities=9% Similarity=0.064 Sum_probs=35.0
Q ss_pred CCCccEEEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECC
Q 019349 144 SLNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSS 189 (342)
Q Consensus 144 ~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~ 189 (342)
+.++.+.+++- ..|+|...|..+++.+..++-....|+|++|--
T Consensus 220 D~eG~L~Va~~--ng~~V~~~dp~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 220 DTEGNLYVATF--NGGTVQKVDPTTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred ccCCcEEEEEe--cCcEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence 44555554443 468999999999999999998899999999964
No 435
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=86.81 E-value=39 Score=34.39 Aligned_cols=109 Identities=18% Similarity=0.268 Sum_probs=71.1
Q ss_pred CCCCeEEEEEcCCC-CEEEEEcCCcE-EEEeCCCC------cEEEEEe-eC----------CEEEEEEcCCCCeEEEEcC
Q 019349 6 SSYPVFFVSFNQDN-SGFALSTKDGF-KIFDSSTG------RLCYERA-VG----------AFSIVEMLYSSSLLAIVGA 66 (342)
Q Consensus 6 ~~~~V~~l~fs~d~-~~la~g~~~g~-~v~d~~~~------~~~~~~~-~~----------~~~~~~~~~~~~~~~~~~~ 66 (342)
...+...++|+|.. ..||+-..+|. .||++... .+..... .+ ...-+.|..+.+.++++.
T Consensus 144 gg~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~- 222 (765)
T PF10214_consen 144 GGFPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCN- 222 (765)
T ss_pred CCCccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEc-
Confidence 34577899999844 57998888885 99999221 1111110 11 122345555556666664
Q ss_pred CCCCCCCCCeEEEEECCCCcEEE---EEecCCceEEEEEcCC---eEEEEECCeEEEEECCC
Q 019349 67 GEQPSLSPRRLCLFNTTTGTALR---ELNFLTSILAVRLNKK---RLVIVLREKTYIYDANT 122 (342)
Q Consensus 67 g~~~~~~d~~i~iwd~~~~~~~~---~~~~~~~v~~i~~~~~---~~~~~~d~~i~i~d~~~ 122 (342)
...+.++|++++.... .......|.++.-.+. +.++.+...|...++..
T Consensus 223 -------r~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLTs~eiiw~~~~~ 277 (765)
T PF10214_consen 223 -------RSKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILTSKEIIWLDVKS 277 (765)
T ss_pred -------CCceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEecCeEEEEEccC
Confidence 4688899988776532 2223457888888766 77788888999999876
No 436
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=86.23 E-value=4.1 Score=39.42 Aligned_cols=32 Identities=19% Similarity=0.152 Sum_probs=24.7
Q ss_pred EEEEEEec----CCCcccEEEEEeCCCcEEEEecCCCCC
Q 019349 227 IFSLSFGQ----SMQFQDILVATSSSGSLHVFSPGFAIN 261 (342)
Q Consensus 227 v~~l~fs~----d~~~~~~l~~~s~dg~i~vwd~~~~~~ 261 (342)
..++++++ +.. +|++-+.|+++|+||+++...
T Consensus 217 ~~~~~~~~~~~~~~~---~l~tl~~D~~LRiW~l~t~~~ 252 (547)
T PF11715_consen 217 AASLAVSSSEINDDT---FLFTLSRDHTLRIWSLETGQC 252 (547)
T ss_dssp EEEEEE-----ETTT---EEEEEETTSEEEEEETTTTCE
T ss_pred cceEEEecceeCCCC---EEEEEeCCCeEEEEECCCCeE
Confidence 45556665 555 999999999999999998876
No 437
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=86.15 E-value=28 Score=32.19 Aligned_cols=197 Identities=12% Similarity=0.073 Sum_probs=100.5
Q ss_pred EEEcCCCCeEEEEc--CCCCCCCCCCeEEEEECCCCcEEEEEecCCceEEEEEcCC--eEEEEE-C----------C-eE
Q 019349 52 VEMLYSSSLLAIVG--AGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRLNKK--RLVIVL-R----------E-KT 115 (342)
Q Consensus 52 ~~~~~~~~~~~~~~--~g~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~i~~~~~--~~~~~~-d----------~-~i 115 (342)
..+.++++++++.- +| ....+|++.|+.+|+.+...-.......+.|.++ .++... + . .|
T Consensus 129 ~~~Spdg~~la~~~s~~G----~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v 204 (414)
T PF02897_consen 129 FSVSPDGKRLAYSLSDGG----SEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV 204 (414)
T ss_dssp EEETTTSSEEEEEEEETT----SSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred eeECCCCCEEEEEecCCC----CceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence 45667788877542 22 2346799999999977653211112233888777 343333 2 1 48
Q ss_pred EEEECCCCcee--eEEeCCCCCceEEEEeeCCCccEEEE-eCCCCc-cEEEEEEccCC----ceeEEEecccCCeeEEEE
Q 019349 116 YIYDANTLAIL--DTIDTVPNLKGLCAFSPSLNACFLAV-PASTTK-GSVLVYNVMEL----HSHCEIDAHQAPLAAIVL 187 (342)
Q Consensus 116 ~i~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~-g~i~iwd~~~~----~~~~~~~~h~~~v~~i~~ 187 (342)
+.|.+.+...- -.++...+....+.+..++++.+++. ..+..+ ..+.+.|+..+ .....+..+...+....-
T Consensus 205 ~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~ 284 (414)
T PF02897_consen 205 YRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVD 284 (414)
T ss_dssp EEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEE
T ss_pred EEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEE
Confidence 89999876432 22333333322556666777777664 222234 67899998874 233333333333433322
Q ss_pred CCCCCEEEEEe---CCCcEEEEEEcCCCee---EEEeccCcCceeEEEEEEecCCCcccEEEEEeCCC--cEEEEecC
Q 019349 188 SSNGMYIATAS---EQGTIIRVFLVSEATK---SYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSG--SLHVFSPG 257 (342)
Q Consensus 188 s~dg~~lat~s---~dg~~irlwd~~~~~~---~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg--~i~vwd~~ 257 (342)
...+.+++... ..+.++ -.++.+... ...+..+.....+..+....+. +++....++ .|+++++.
T Consensus 285 ~~~~~~yi~Tn~~a~~~~l~-~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~----Lvl~~~~~~~~~l~v~~~~ 357 (414)
T PF02897_consen 285 HHGDRLYILTNDDAPNGRLV-AVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDY----LVLSYRENGSSRLRVYDLD 357 (414)
T ss_dssp EETTEEEEEE-TT-TT-EEE-EEETTSTSGGGEEEEEE--SSSEEEEEEEEETTE----EEEEEEETTEEEEEEEETT
T ss_pred ccCCEEEEeeCCCCCCcEEE-EecccccccccceeEEcCCCCceeEEEEEEECCE----EEEEEEECCccEEEEEECC
Confidence 23444444332 235554 456666542 1133222222346666554332 455555555 48889988
No 438
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=85.47 E-value=17 Score=37.62 Aligned_cols=84 Identities=13% Similarity=0.135 Sum_probs=53.7
Q ss_pred CccEEEEEEccCCce-eEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCc--CceeEEEEEEe
Q 019349 157 TKGSVLVYNVMELHS-HCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGT--YPSTIFSLSFG 233 (342)
Q Consensus 157 ~~g~i~iwd~~~~~~-~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~--~~~~v~~l~fs 233 (342)
.|+.|++.-+..... +..++ -....+|++|+|.|+.++.|-..|+++ -|- .+++...++.+.. ....|.+|+|-
T Consensus 176 ~dlsl~V~~~~~~~~~v~s~p-~t~~~Tav~WSprGKQl~iG~nnGt~v-Qy~-P~leik~~ip~Pp~~e~yrvl~v~Wl 252 (1405)
T KOG3630|consen 176 SDLSLRVKSTKQLAQNVTSFP-VTNSQTAVLWSPRGKQLFIGRNNGTEV-QYE-PSLEIKSEIPEPPVEENYRVLSVTWL 252 (1405)
T ss_pred cccchhhhhhhhhhhhhcccC-cccceeeEEeccccceeeEecCCCeEE-Eee-cccceeecccCCCcCCCcceeEEEEe
Confidence 477788876643322 22222 345689999999999999999999864 333 3444434433211 13459999998
Q ss_pred cCCCcccEEEEEe
Q 019349 234 QSMQFQDILVATS 246 (342)
Q Consensus 234 ~d~~~~~~l~~~s 246 (342)
.... +|++-+
T Consensus 253 ~t~e---flvvy~ 262 (1405)
T KOG3630|consen 253 STQE---FLVVYG 262 (1405)
T ss_pred ccee---EEEEec
Confidence 7766 666544
No 439
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=85.40 E-value=25 Score=30.90 Aligned_cols=159 Identities=13% Similarity=0.130 Sum_probs=83.0
Q ss_pred CCeEEEEECCCCcEEEEEecCC-------ceEEEEEcC--C----eEEEEE---CCeEEEEECCCCceeeEEeCCCCC--
Q 019349 74 PRRLCLFNTTTGTALRELNFLT-------SILAVRLNK--K----RLVIVL---REKTYIYDANTLAILDTIDTVPNL-- 135 (342)
Q Consensus 74 d~~i~iwd~~~~~~~~~~~~~~-------~v~~i~~~~--~----~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~-- 135 (342)
.-+|.+||+++++.+..+.++. ...++.+.. . ..+..+ ...+.+||+.+++.-+.......+
T Consensus 33 ~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p 112 (287)
T PF03022_consen 33 PPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDP 112 (287)
T ss_dssp --EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-
T ss_pred CcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceec
Confidence 4589999999999999988754 346666654 1 344444 358999999998765555322211
Q ss_pred ---------------ceEEEEeeC---CCccEEEEeCCCCccEEEEEEcc-----CCc---------eeEEEeccc-CCe
Q 019349 136 ---------------KGLCAFSPS---LNACFLAVPASTTKGSVLVYNVM-----ELH---------SHCEIDAHQ-APL 182 (342)
Q Consensus 136 ---------------~~~~~~~~~---~~~~~l~~~~~~~~g~i~iwd~~-----~~~---------~~~~~~~h~-~~v 182 (342)
.++..++.. +++..|.+..- .. -++|-+. +.. .+..+ +.+ ...
T Consensus 113 ~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~l-ss--~~ly~v~T~~L~~~~~~~~~~~~~~v~~l-G~k~~~s 188 (287)
T PF03022_consen 113 DAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPL-SS--RKLYRVPTSVLRDPSLSDAQALASQVQDL-GDKGSQS 188 (287)
T ss_dssp SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEET-T---SEEEEEEHHHHCSTT--HHH-HHHT-EEE-EE---SE
T ss_pred cccceeccCceEecCCCccccccCCCCCCccEEEEEeC-CC--CcEEEEEHHHhhCccccccccccccceec-cccCCCC
Confidence 112223322 24444444321 11 2223221 111 11122 222 356
Q ss_pred eEEEECCCCCEEEEEeCCCcEEEEEEcCCCe---eEEEeccCcC-ceeEEEEEEec--CCC
Q 019349 183 AAIVLSSNGMYIATASEQGTIIRVFLVSEAT---KSYSFRRGTY-PSTIFSLSFGQ--SMQ 237 (342)
Q Consensus 183 ~~i~~s~dg~~lat~s~dg~~irlwd~~~~~---~~~~~~~~~~-~~~v~~l~fs~--d~~ 237 (342)
..++++++|.+..+--+.+.+ ..|+..+.- .+..+..... -.-+.++.+.+ ++.
T Consensus 189 ~g~~~D~~G~ly~~~~~~~aI-~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~ 248 (287)
T PF03022_consen 189 DGMAIDPNGNLYFTDVEQNAI-GCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGY 248 (287)
T ss_dssp CEEEEETTTEEEEEECCCTEE-EEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-
T ss_pred ceEEECCCCcEEEecCCCCeE-EEEeCCCCcCccchheeEEcCceeeccceeeeccccCce
Confidence 778999999988888888774 699987521 1122211111 12367788888 665
No 440
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=85.24 E-value=55 Score=34.68 Aligned_cols=146 Identities=16% Similarity=0.251 Sum_probs=82.6
Q ss_pred eEEEEECCeEEEEECCCCceeeEEeCCCCCceEE-EEeeCCC------ccEEEEeCCCCccEEEEEEcc----CCce---
Q 019349 106 RLVIVLREKTYIYDANTLAILDTIDTVPNLKGLC-AFSPSLN------ACFLAVPASTTKGSVLVYNVM----ELHS--- 171 (342)
Q Consensus 106 ~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~------~~~l~~~~~~~~g~i~iwd~~----~~~~--- 171 (342)
+..+..|+.+.+|+++++.....++.-.+...-+ -+-|.|+ ...|+.+. --.|.++-+. ++..
T Consensus 92 RaWiTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT---~~ei~ilgV~~~~~~~~~~~f 168 (1311)
T KOG1900|consen 92 RAWITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVAT---PVEIVILGVSFDEFTGELSIF 168 (1311)
T ss_pred ceEEEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecc---cceEEEEEEEeccccCccccc
Confidence 4455569999999999876666665544432222 2233332 11233222 2346665432 2211
Q ss_pred --eEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEE-EEcCCC---e---e--------------EEEeccCcCceeEE
Q 019349 172 --HCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRV-FLVSEA---T---K--------------SYSFRRGTYPSTIF 228 (342)
Q Consensus 172 --~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irl-wd~~~~---~---~--------------~~~~~~~~~~~~v~ 228 (342)
..++......|+||....+|+.+.+|- ||.+..+ |...+| + + +..+. +.+..+|.
T Consensus 169 ~~~~~i~~dg~~V~~I~~t~nGRIF~~G~-dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~-~~~~dpI~ 246 (1311)
T KOG1900|consen 169 NTSFKISVDGVSVNCITYTENGRIFFAGR-DGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVP-GSSKDPIR 246 (1311)
T ss_pred ccceeeecCCceEEEEEeccCCcEEEeec-CCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCC-CCCCCcce
Confidence 122333456789999888998777654 5543222 222221 1 1 00111 22344688
Q ss_pred EEEEecCCCcccEEEEEeCCCcEEEEecCCC
Q 019349 229 SLSFGQSMQFQDILVATSSSGSLHVFSPGFA 259 (342)
Q Consensus 229 ~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~ 259 (342)
.|+...... .|.+=++.|+|.+|++...
T Consensus 247 qi~ID~SR~---IlY~lsek~~v~~Y~i~~~ 274 (1311)
T KOG1900|consen 247 QITIDNSRN---ILYVLSEKGTVSAYDIGGN 274 (1311)
T ss_pred eeEeccccc---eeeeeccCceEEEEEccCC
Confidence 888876666 8999999999999999874
No 441
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=84.41 E-value=20 Score=32.75 Aligned_cols=134 Identities=16% Similarity=0.172 Sum_probs=63.2
Q ss_pred CCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCcee---EEEEEEecCCCcccEEEEEeCC----CcEEEEecCCCCC
Q 019349 189 SNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPST---IFSLSFGQSMQFQDILVATSSS----GSLHVFSPGFAIN 261 (342)
Q Consensus 189 ~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~---v~~l~fs~d~~~~~~l~~~s~d----g~i~vwd~~~~~~ 261 (342)
|.-.+++....++-+ .+||+. |+.+..+..+ .... ...+.+ .++-- -||+++.. ++|++|.+.....
T Consensus 66 p~kSlIigTdK~~GL-~VYdL~-Gk~lq~~~~G-r~NNVDvrygf~l--~g~~v-Dlavas~R~~g~n~l~~f~id~~~g 139 (381)
T PF02333_consen 66 PAKSLIIGTDKKGGL-YVYDLD-GKELQSLPVG-RPNNVDVRYGFPL--NGKTV-DLAVASDRSDGRNSLRLFRIDPDTG 139 (381)
T ss_dssp GGG-EEEEEETTTEE-EEEETT-S-EEEEE-SS--EEEEEEEEEEEE--TTEEE-EEEEEEE-CCCT-EEEEEEEETTTT
T ss_pred cccceEEEEeCCCCE-EEEcCC-CcEEEeecCC-Ccceeeeecceec--CCceE-EEEEEecCcCCCCeEEEEEecCCCC
Confidence 445667777777765 699994 7777777533 1222 222333 33300 15555532 5799999864221
Q ss_pred -CCCCCCccccccccccccccccccccccceeeeccCCCccccEEEEEEeCCcEEEEEEecCCCCeeeeEEEeeeecc
Q 019349 262 -QRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSINNCCESTWTLDREFNLL 338 (342)
Q Consensus 262 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~~~~~~~~~~~~~~~~~~~~~ 338 (342)
..........+ +..... +-+ ++.+.-+.. ..-++++...+|.+..|.+.....+...-.+.|.|.|-
T Consensus 140 ~L~~v~~~~~p~----~~~~~e---~yG--lcly~~~~~-g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~ 207 (381)
T PF02333_consen 140 ELTDVTDPAAPI----ATDLSE---PYG--LCLYRSPST-GALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVG 207 (381)
T ss_dssp EEEE-CBTTC-E----E-SSSS---EEE--EEEEE-TTT---EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-S
T ss_pred cceEcCCCCccc----cccccc---cee--eEEeecCCC-CcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCC
Confidence 00000000000 000000 000 011110001 12478888899999999998766555566888888873
No 442
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=84.03 E-value=36 Score=31.72 Aligned_cols=29 Identities=28% Similarity=0.452 Sum_probs=24.6
Q ss_pred EEEEEEecCCCcccEEEEEeCCCcEEEEecCC
Q 019349 227 IFSLSFGQSMQFQDILVATSSSGSLHVFSPGF 258 (342)
Q Consensus 227 v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~ 258 (342)
|.+|+..+..+ .|.+.+.+|.|++|++..
T Consensus 192 I~~v~~d~~r~---~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 192 IVQVAVDPSRR---LLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp EEEEEEETTTT---EEEEEESSE-EEEEEE-S
T ss_pred eeeEEecCCcC---EEEEEeCCCcEEEEEEeC
Confidence 88898888877 999999999999999975
No 443
>KOG3611 consensus Semaphorins [Signal transduction mechanisms]
Probab=83.99 E-value=13 Score=37.11 Aligned_cols=72 Identities=21% Similarity=0.271 Sum_probs=51.0
Q ss_pred cCCeeEEEEC----CCCCE--EEEEeCCCcEEEEEEcCCCe-----eEEEeccCcCceeEEEEEEecCCCcccEEEEEeC
Q 019349 179 QAPLAAIVLS----SNGMY--IATASEQGTIIRVFLVSEAT-----KSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSS 247 (342)
Q Consensus 179 ~~~v~~i~~s----~dg~~--lat~s~dg~~irlwd~~~~~-----~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~ 247 (342)
....+.|+.. .|+++ |..|.++|+++|+-...... .+.+++--....+|..|.+++... .|.+|+.
T Consensus 407 ~~~~t~I~Vd~~~~~~~~ydVlflGTd~G~vlKvV~~~~~~~~~~~llEElqvf~~~~pI~~m~Ls~~~~---~LyVgs~ 483 (737)
T KOG3611|consen 407 DYRLTQIVVDRVAGLDGNYDVLFLGTDAGTVLKVVSPGKESGKSNVLLEELQVFPDAEPIRSMQLSSKRG---SLYVGSR 483 (737)
T ss_pred cceEEEEEEEEecCCCCcEEEEEEecCCCeEEEEEecCCccCccceeEEEEeecCCCCceeEEEecccCC---eEEEEcc
Confidence 4556677776 55654 77899999988877665521 355554333446799999999887 8999999
Q ss_pred CCcEEE
Q 019349 248 SGSLHV 253 (342)
Q Consensus 248 dg~i~v 253 (342)
.|-++|
T Consensus 484 ~gV~qv 489 (737)
T KOG3611|consen 484 SGVVQV 489 (737)
T ss_pred CcEEEe
Confidence 886654
No 444
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=83.19 E-value=7.6 Score=31.18 Aligned_cols=29 Identities=21% Similarity=0.338 Sum_probs=20.5
Q ss_pred EEEEEEecCCCcccEEEEEeCCCcEEEEecCCCC
Q 019349 227 IFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAI 260 (342)
Q Consensus 227 v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~ 260 (342)
..+|+||.||+ ||+++. ..|+|.+...+.
T Consensus 7 ~~~l~WS~Dg~----laV~t~-~~v~IL~~~~P~ 35 (173)
T PF12657_consen 7 PNALAWSEDGQ----LAVATG-ESVHILDPQTPN 35 (173)
T ss_pred CcCeeECCCCC----EEEEcC-CeEEEEeccCCc
Confidence 46799999997 666654 478888655444
No 445
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=82.58 E-value=4.9 Score=22.94 Aligned_cols=22 Identities=23% Similarity=0.253 Sum_probs=16.1
Q ss_pred cCCeeEEEECCCCCEEEEEeCC
Q 019349 179 QAPLAAIVLSSNGMYIATASEQ 200 (342)
Q Consensus 179 ~~~v~~i~~s~dg~~lat~s~d 200 (342)
...-....|||||++|+-.+..
T Consensus 8 ~~~~~~p~~SpDGk~i~f~s~~ 29 (39)
T PF07676_consen 8 PGDDGSPAWSPDGKYIYFTSNR 29 (39)
T ss_dssp SSSEEEEEE-TTSSEEEEEEEC
T ss_pred CccccCEEEecCCCEEEEEecC
Confidence 3456678899999998887755
No 446
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=81.80 E-value=35 Score=29.88 Aligned_cols=159 Identities=13% Similarity=0.136 Sum_probs=91.7
Q ss_pred CceEEEEEcCCeEEE--EECC-eEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCce
Q 019349 95 TSILAVRLNKKRLVI--VLRE-KTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHS 171 (342)
Q Consensus 95 ~~v~~i~~~~~~~~~--~~d~-~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~ 171 (342)
..+.++.++|+...+ ..++ .-.++=...|++++++.... -...-++..-+++.+.++-- .++.+.++.+.....
T Consensus 86 ~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g-~~DpE~Ieyig~n~fvi~dE--R~~~l~~~~vd~~t~ 162 (316)
T COG3204 86 ANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTG-FSDPETIEYIGGNQFVIVDE--RDRALYLFTVDADTT 162 (316)
T ss_pred ccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccc-cCChhHeEEecCCEEEEEeh--hcceEEEEEEcCCcc
Confidence 358889999875433 3344 34444445678888874422 11122334445566666554 467788776654422
Q ss_pred eE-------EEe--cc-cCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEec---cC-----cCceeEEEEEEe
Q 019349 172 HC-------EID--AH-QAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFR---RG-----TYPSTIFSLSFG 233 (342)
Q Consensus 172 ~~-------~~~--~h-~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~---~~-----~~~~~v~~l~fs 233 (342)
+. ++. .+ ......++|+|..+.|..+=+..- ++|+-+..+..--... .. ..-..|.++.|+
T Consensus 163 ~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P-~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~ 241 (316)
T COG3204 163 VISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNP-IGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFN 241 (316)
T ss_pred EEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCC-cEEEEEecCCcccccccccCcccccceEeeccccceec
Confidence 11 111 12 446778999999888888877765 4777765333111110 00 001237778888
Q ss_pred cCCCcccEEEEEeCCCcEEEEecCCC
Q 019349 234 QSMQFQDILVATSSSGSLHVFSPGFA 259 (342)
Q Consensus 234 ~d~~~~~~l~~~s~dg~i~vwd~~~~ 259 (342)
+... ++|+-+.+++.+--.|.+..
T Consensus 242 ~~~~--~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 242 AITN--SLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred CCCC--cEEEEecCCceEEEEecCCC
Confidence 7554 27777777777777776654
No 447
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=81.39 E-value=30 Score=28.81 Aligned_cols=151 Identities=17% Similarity=0.122 Sum_probs=80.7
Q ss_pred ceEEEEEcC-CeEEEEE-CCeEEEEECC--CCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCC-cc---EEEEE---
Q 019349 96 SILAVRLNK-KRLVIVL-REKTYIYDAN--TLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTT-KG---SVLVY--- 164 (342)
Q Consensus 96 ~v~~i~~~~-~~~~~~~-d~~i~i~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~g---~i~iw--- 164 (342)
+...++..+ +.++++. ..+|.+|++. ..+++..+.+- ..+..+..+..|.++++--.+. .. .+++|
T Consensus 19 EP~~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv---~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NW 95 (215)
T PF14761_consen 19 EPTAVCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFSTV---GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNW 95 (215)
T ss_pred CcceeeccCCceEEEEcCCCEEEEEEcccCCCceeEEEcch---hheeEEEeccccceEEEEEeecCCccceEEEEEEEh
Confidence 334455555 7777755 6799999997 33566677654 2355566666677888754211 12 56664
Q ss_pred Ecc--CCceeE-EEecc---------------------cCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCee-EE---
Q 019349 165 NVM--ELHSHC-EIDAH---------------------QAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATK-SY--- 216 (342)
Q Consensus 165 d~~--~~~~~~-~~~~h---------------------~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~-~~--- 216 (342)
+.. ..+++. .+-+| ..++.||+--|-..-|+.|+.+ ++ .+|.+..... ..
T Consensus 96 r~~~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~-~l-~lf~l~~~~~~~~~~~ 173 (215)
T PF14761_consen 96 RSQKEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGN-KL-VLFTLKYQTIQSEKFS 173 (215)
T ss_pred hhhcccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCC-EE-EEEEEEEEEEeccccc
Confidence 332 112222 11121 3356778877743345566654 44 5898764432 11
Q ss_pred --EeccC----cCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecC
Q 019349 217 --SFRRG----TYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPG 257 (342)
Q Consensus 217 --~~~~~----~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~ 257 (342)
.|... ...-....++|. +. |+|..++ -.++++.+.
T Consensus 174 ~lDFe~~l~~~~~~~~p~~v~ic--~~---yiA~~s~-~ev~Vlkl~ 214 (215)
T PF14761_consen 174 FLDFERSLIDHIDNFKPTQVAIC--EG---YIAVMSD-LEVLVLKLE 214 (215)
T ss_pred EEechhhhhheecCceEEEEEEE--ee---EEEEecC-CEEEEEEEe
Confidence 12110 111124556665 33 7776664 477777653
No 448
>PF14157 YmzC: YmzC-like protein; PDB: 3KVP_E.
Probab=81.28 E-value=6.3 Score=25.41 Aligned_cols=31 Identities=19% Similarity=0.314 Sum_probs=24.4
Q ss_pred cEEEEEEeCCcEEEEEEecCCCCeeeeEEEeeee
Q 019349 303 ASVSVITYNGYFVEYIFSINNCCESTWTLDREFN 336 (342)
Q Consensus 303 ~~l~~~~~dg~v~~~~~~~~~~~~~~~~~~~~~~ 336 (342)
+..+..+.+|.|+||.+++.+.+ ..|.|.+.
T Consensus 30 N~Fav~~e~~~iKIfkyd~~tNe---i~L~KE~~ 60 (63)
T PF14157_consen 30 NHFAVVDEDGQIKIFKYDEDTNE---ITLKKEFY 60 (63)
T ss_dssp TEEEEE-ETTEEEEEEEETTTTE---EEEEEEEE
T ss_pred CEEEEEecCCeEEEEEeCCCCCe---EEEEEeee
Confidence 67777899999999999998776 37777664
No 449
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=80.85 E-value=9.6 Score=26.86 Aligned_cols=50 Identities=18% Similarity=0.282 Sum_probs=32.3
Q ss_pred CccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEe-CCCcEEEEE
Q 019349 157 TKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATAS-EQGTIIRVF 207 (342)
Q Consensus 157 ~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s-~dg~~irlw 207 (342)
.+|.+.-||..+++....+.+ -.--+.|++++|+.+|+.+= ...++.|.|
T Consensus 35 ~~GRll~ydp~t~~~~vl~~~-L~fpNGVals~d~~~vlv~Et~~~Ri~ryw 85 (89)
T PF03088_consen 35 PTGRLLRYDPSTKETTVLLDG-LYFPNGVALSPDESFVLVAETGRYRILRYW 85 (89)
T ss_dssp --EEEEEEETTTTEEEEEEEE-ESSEEEEEE-TTSSEEEEEEGGGTEEEEEE
T ss_pred CCcCEEEEECCCCeEEEehhC-CCccCeEEEcCCCCEEEEEeccCceEEEEE
Confidence 578999999999875444433 23458899999999777653 334555555
No 450
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=80.49 E-value=7.8 Score=37.52 Aligned_cols=37 Identities=19% Similarity=0.296 Sum_probs=28.2
Q ss_pred CeeEEEECC----CCCEEEEEeCCCcEEEEEEcCCCeeEEEe
Q 019349 181 PLAAIVLSS----NGMYIATASEQGTIIRVFLVSEATKSYSF 218 (342)
Q Consensus 181 ~v~~i~~s~----dg~~lat~s~dg~~irlwd~~~~~~~~~~ 218 (342)
....++++. +..+|++-+.|++ +|+||+.+++++...
T Consensus 216 ~~~~~~~~~~~~~~~~~l~tl~~D~~-LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 216 VAASLAVSSSEINDDTFLFTLSRDHT-LRIWSLETGQCLATI 256 (547)
T ss_dssp -EEEEEE-----ETTTEEEEEETTSE-EEEEETTTTCEEEEE
T ss_pred ccceEEEecceeCCCCEEEEEeCCCe-EEEEECCCCeEEEEe
Confidence 455666666 6789999999997 599999999996654
No 451
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=79.54 E-value=0.26 Score=45.39 Aligned_cols=120 Identities=17% Similarity=0.220 Sum_probs=76.2
Q ss_pred CCeEEEEECCCCcEEEEEecCCceEEEEEcCCeEEE--EE--CCeEEEEECCCCceeeEEeC-CCCCceEEEEeeCCCcc
Q 019349 74 PRRLCLFNTTTGTALRELNFLTSILAVRLNKKRLVI--VL--REKTYIYDANTLAILDTIDT-VPNLKGLCAFSPSLNAC 148 (342)
Q Consensus 74 d~~i~iwd~~~~~~~~~~~~~~~v~~i~~~~~~~~~--~~--d~~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 148 (342)
+..+..+|- .++.......+....+++++.+...+ .. .+.+++||+.+.... +++. ..+.... +.+++...
T Consensus 55 ~tiv~~YD~-agq~~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytq-qLE~gg~~s~sl--l~wsKg~~ 130 (615)
T KOG2247|consen 55 NTIVIYYDK-AGQVILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQ-QLESGGTSSKSL--LAWSKGTP 130 (615)
T ss_pred hhHHHhhhh-hcceecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHH-HHhccCcchHHH--HhhccCCc
Confidence 667777773 45666667777778888887654332 22 679999999764221 1111 1111222 34444444
Q ss_pred EEEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCC
Q 019349 149 FLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQ 200 (342)
Q Consensus 149 ~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~d 200 (342)
.++.+. ..|.+.|++..+.........|...++++++.+.+. .+.++.|
T Consensus 131 el~ig~--~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~-vil~dcd 179 (615)
T KOG2247|consen 131 ELVIGN--NAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDY-VILCDCD 179 (615)
T ss_pred cccccc--cccceEEEeccchhhhhhhcccccceeEEEecccce-eeecCcH
Confidence 555554 578899999888766655545999999999999764 5555555
No 452
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=79.15 E-value=48 Score=29.79 Aligned_cols=103 Identities=14% Similarity=0.212 Sum_probs=52.1
Q ss_pred EEEeeCCCccEEEEeCCCCccEEEEEEccCCce---eEEE----ecccCCeeEEEECCC----CCEEEEEeCC-------
Q 019349 139 CAFSPSLNACFLAVPASTTKGSVLVYNVMELHS---HCEI----DAHQAPLAAIVLSSN----GMYIATASEQ------- 200 (342)
Q Consensus 139 ~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~---~~~~----~~h~~~v~~i~~s~d----g~~lat~s~d------- 200 (342)
.++++.|++.++++- ..|.|++++ ..+.. +..+ .........++|+|+ +.+.++-+..
T Consensus 5 ~~~a~~pdG~l~v~e---~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 5 RSMAFLPDGRLLVAE---RSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp EEEEEETTSCEEEEE---TTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred eEEEEeCCCcEEEEe---CCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 456667777777654 479999999 33332 2222 123456889999994 4443333321
Q ss_pred -CcEEEEEEcCCC-------eeEE-Eecc-CcCceeEEEEEEecCCCcccEEEEEeCCC
Q 019349 201 -GTIIRVFLVSEA-------TKSY-SFRR-GTYPSTIFSLSFGQSMQFQDILVATSSSG 249 (342)
Q Consensus 201 -g~~irlwd~~~~-------~~~~-~~~~-~~~~~~v~~l~fs~d~~~~~~l~~~s~dg 249 (342)
.++.| |....+ +.+. .+.. ....+.-..|+|.||+. +.++.++.+
T Consensus 81 ~~~v~r-~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~---LYvs~G~~~ 135 (331)
T PF07995_consen 81 DNRVVR-FTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGK---LYVSVGDGG 135 (331)
T ss_dssp EEEEEE-EEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSE---EEEEEB-TT
T ss_pred ceeeEE-EeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCc---EEEEeCCCC
Confidence 13332 333322 1121 2222 11223366799999998 555555443
No 453
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=78.84 E-value=80 Score=32.17 Aligned_cols=161 Identities=13% Similarity=0.048 Sum_probs=88.9
Q ss_pred ecCCceEEEEEc---C------CeEEEEECCeEEEEE------CCC---------CceeeEEe---CCCCCceEEEEeeC
Q 019349 92 NFLTSILAVRLN---K------KRLVIVLREKTYIYD------ANT---------LAILDTID---TVPNLKGLCAFSPS 144 (342)
Q Consensus 92 ~~~~~v~~i~~~---~------~~~~~~~d~~i~i~d------~~~---------~~~~~~~~---~~~~~~~~~~~~~~ 144 (342)
....+|..|+|. . ..++|-....+.|+. +.. ..++..+. +...+..-++|.|.
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~ 156 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPW 156 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccC
Confidence 345566666665 1 123333467788877 211 12333332 22333334455544
Q ss_pred CCccEEEEeCCCCccEEEEEEccCCc-----eeEEEeccc----------CCeeEEEECCCCCEEEEEeCCCcEEEEEEc
Q 019349 145 LNACFLAVPASTTKGSVLVYNVMELH-----SHCEIDAHQ----------APLAAIVLSSNGMYIATASEQGTIIRVFLV 209 (342)
Q Consensus 145 ~~~~~l~~~~~~~~g~i~iwd~~~~~-----~~~~~~~h~----------~~v~~i~~s~dg~~lat~s~dg~~irlwd~ 209 (342)
.. ..+|... ..|...|||+.... .......+. +.-..|.|.++-+.|+.++... + .++|+
T Consensus 157 ~~-~q~AiVD--~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r~~-l-~~~d~ 231 (765)
T PF10214_consen 157 DQ-RQFAIVD--EKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNRSK-L-MLIDF 231 (765)
T ss_pred cc-ceEEEEe--ccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcCCc-e-EEEEC
Confidence 33 4677777 68999999992111 111111111 2234788988888888888663 4 59999
Q ss_pred CCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCC
Q 019349 210 SEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAI 260 (342)
Q Consensus 210 ~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~ 260 (342)
.+......+........|..+.=+|+... ..|+-++ ..|-..++....
T Consensus 232 ~~~~~~~~l~~~~~~~~IlDv~~~~~~~~-~~FiLTs--~eiiw~~~~~~~ 279 (765)
T PF10214_consen 232 ESNWQTEYLVTAKTWSWILDVKRSPDNPS-HVFILTS--KEIIWLDVKSSS 279 (765)
T ss_pred CCCCccchhccCCChhheeeEEecCCccc-eEEEEec--CeEEEEEccCCC
Confidence 87765332322223345888888887320 1344433 568888887643
No 454
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=78.16 E-value=71 Score=31.23 Aligned_cols=229 Identities=12% Similarity=0.071 Sum_probs=104.8
Q ss_pred CCCEEEEEcCCc-------EEEEeCCCCcEEEEEee-CCEEEEEEcCCCCeEEEEcCCCC-CCCCCCeEEEEECCCCcEE
Q 019349 18 DNSGFALSTKDG-------FKIFDSSTGRLCYERAV-GAFSIVEMLYSSSLLAIVGAGEQ-PSLSPRRLCLFNTTTGTAL 88 (342)
Q Consensus 18 d~~~la~g~~~g-------~~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~-~~~~d~~i~iwd~~~~~~~ 88 (342)
.+..+++|+.+. +..||..+.+....... ..-.......-.+.+.++|| .+ ....-+++-.||..+++..
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG-~~~~~~~l~~ve~YD~~~~~W~ 362 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGG-YDSGSDRLSSVERYDPRTNQWT 362 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEECCEEEEEcc-ccCCCcccceEEEecCCCCcee
Confidence 345566665442 46788877643322111 11111111122345545554 44 3334578899999888855
Q ss_pred EEEecCC--ceEEEEEcCCeEEEEE--C-----CeEEEEECCCCc--eeeEEeCCCCCceEEEEeeCCCccEEEEeCCCC
Q 019349 89 RELNFLT--SILAVRLNKKRLVIVL--R-----EKTYIYDANTLA--ILDTIDTVPNLKGLCAFSPSLNACFLAVPASTT 157 (342)
Q Consensus 89 ~~~~~~~--~v~~i~~~~~~~~~~~--d-----~~i~i~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 157 (342)
....... .-.+++.-...+++++ | +++..||..+.+ .+..+.. .....+.+.. ++...+++|.+.
T Consensus 363 ~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~---~r~~~gv~~~-~g~iYi~GG~~~ 438 (571)
T KOG4441|consen 363 PVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLT---RRSGHGVAVL-GGKLYIIGGGDG 438 (571)
T ss_pred ccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCc---ceeeeEEEEE-CCEEEEEcCcCC
Confidence 4222211 1223333344444444 3 257788876542 1211111 1222222222 244555555321
Q ss_pred c----cEEEEEEccCCce--eEEEecccCCeeEEEECCCCCEEEEEeCCCc----EEEEEEcCCCeeEEEeccCcCceeE
Q 019349 158 K----GSVLVYNVMELHS--HCEIDAHQAPLAAIVLSSNGMYIATASEQGT----IIRVFLVSEATKSYSFRRGTYPSTI 227 (342)
Q Consensus 158 ~----g~i~iwd~~~~~~--~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~----~irlwd~~~~~~~~~~~~~~~~~~v 227 (342)
. .++..||..+.+= +..+..-..... ++. -++...+.||.||. .+..+|..+.+-...-.-......+
T Consensus 439 ~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~ 516 (571)
T KOG4441|consen 439 SSNCLNSVECYDPETNTWTLIAPMNTRRSGFG-VAV-LNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAV 516 (571)
T ss_pred CccccceEEEEcCCCCceeecCCcccccccce-EEE-ECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccc
Confidence 1 4678888876641 111111111111 222 35778888887762 1356777665532211001111112
Q ss_pred EEEEEecCCCcccEEEEEeCCC-----cEEEEecCC
Q 019349 228 FSLSFGQSMQFQDILVATSSSG-----SLHVFSPGF 258 (342)
Q Consensus 228 ~~l~fs~d~~~~~~l~~~s~dg-----~i~vwd~~~ 258 (342)
.... -+++ ..++|+.|| +|..||..+
T Consensus 517 g~~~--~~~~---ly~vGG~~~~~~l~~ve~ydp~~ 547 (571)
T KOG4441|consen 517 GVVV--LGGK---LYAVGGFDGNNNLNTVECYDPET 547 (571)
T ss_pred cEEE--ECCE---EEEEecccCccccceeEEcCCCC
Confidence 2222 2455 777888775 466665443
No 455
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=78.01 E-value=1.5 Score=43.65 Aligned_cols=94 Identities=19% Similarity=0.236 Sum_probs=52.9
Q ss_pred ccEEEEEEcc--CCceeE-----EEecccCCeeEEEEC---CCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCce--
Q 019349 158 KGSVLVYNVM--ELHSHC-----EIDAHQAPLAAIVLS---SNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPS-- 225 (342)
Q Consensus 158 ~g~i~iwd~~--~~~~~~-----~~~~h~~~v~~i~~s---~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~-- 225 (342)
-|...|||+. .|+... .+.....++.-|.|. ++..++..+-.+|+ |++-...+... .-| +++...
T Consensus 152 vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~-i~lL~~~ra~~-~l~-rsHs~~~~ 228 (1283)
T KOG1916|consen 152 VGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGE-IRLLNINRALR-SLF-RSHSQRVT 228 (1283)
T ss_pred hhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCc-eeEeeechHHH-HHH-HhcCCCcc
Confidence 4779999874 343222 222223344444444 45566666666666 57765543321 112 221111
Q ss_pred --------eEEEEEEecCCCcccEEEEEeCCCcEEEEecC
Q 019349 226 --------TIFSLSFGQSMQFQDILVATSSSGSLHVFSPG 257 (342)
Q Consensus 226 --------~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~ 257 (342)
-+.--.+||||+ .||.++.||.+++|.+-
T Consensus 229 d~a~~~~g~~~l~~lSpDGt---v~a~a~~dG~v~f~Qiy 265 (1283)
T KOG1916|consen 229 DMAFFAEGVLKLASLSPDGT---VFAWAISDGSVGFYQIY 265 (1283)
T ss_pred cHHHHhhchhhheeeCCCCc---EEEEeecCCccceeeee
Confidence 011123789999 99999999999999864
No 456
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=77.87 E-value=82 Score=31.75 Aligned_cols=73 Identities=11% Similarity=0.157 Sum_probs=48.6
Q ss_pred eEEEEeeCCCccEEEEeCCCCccEEEEEEccC----------Cce---eEEE--------ecccCCeeEEEECCC---CC
Q 019349 137 GLCAFSPSLNACFLAVPASTTKGSVLVYNVME----------LHS---HCEI--------DAHQAPLAAIVLSSN---GM 192 (342)
Q Consensus 137 ~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~----------~~~---~~~~--------~~h~~~v~~i~~s~d---g~ 192 (342)
.+.-+..++++.++|..|. ..|.|..+.. ++. -+++ ..+...|..+.|+|. +.
T Consensus 86 ~v~~i~~n~~g~~lal~G~---~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~ 162 (717)
T PF10168_consen 86 EVHQISLNPTGSLLALVGP---RGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS 162 (717)
T ss_pred eEEEEEECCCCCEEEEEcC---CcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence 3556677888999999983 3466655531 111 1121 133457899999986 47
Q ss_pred EEEEEeCCCcEEEEEEcCCCe
Q 019349 193 YIATASEQGTIIRVFLVSEAT 213 (342)
Q Consensus 193 ~lat~s~dg~~irlwd~~~~~ 213 (342)
.|+.=..|++ +|+||+...+
T Consensus 163 ~l~vLtsdn~-lR~y~~~~~~ 182 (717)
T PF10168_consen 163 HLVVLTSDNT-LRLYDISDPQ 182 (717)
T ss_pred eEEEEecCCE-EEEEecCCCC
Confidence 8888888886 6999997543
No 457
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.85 E-value=66 Score=30.14 Aligned_cols=115 Identities=9% Similarity=0.080 Sum_probs=71.0
Q ss_pred CCceEEEEEcCCeEEEEE---CCeEEEEECCCCcee--eEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccC
Q 019349 94 LTSILAVRLNKKRLVIVL---REKTYIYDANTLAIL--DTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVME 168 (342)
Q Consensus 94 ~~~v~~i~~~~~~~~~~~---d~~i~i~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~ 168 (342)
.++|++|.|++|..+++. +++|.++++...+.. ...+.......+..+.+..+ +-+|... +.-+-+|-...
T Consensus 66 ~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~---~~G~e~y~v~p 141 (657)
T KOG2377|consen 66 KGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFIT---DQGIEFYQVLP 141 (657)
T ss_pred CCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEe---cCCeEEEEEch
Confidence 458999999999887776 789999998433222 12222223345777887654 4555543 23377777654
Q ss_pred Cc-eeEEEecccCCeeEEEECCCCCEEEEEeC-CCcEEEEEEcCCC
Q 019349 169 LH-SHCEIDAHQAPLAAIVLSSNGMYIATASE-QGTIIRVFLVSEA 212 (342)
Q Consensus 169 ~~-~~~~~~~h~~~v~~i~~s~dg~~lat~s~-dg~~irlwd~~~~ 212 (342)
.+ .++..+.|.-.|+--.|.++.+.+.-++. .+....=+.++++
T Consensus 142 ekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~ 187 (657)
T KOG2377|consen 142 EKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAG 187 (657)
T ss_pred hhhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeec
Confidence 33 45566778888999999998876544443 3332234444443
No 458
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=76.65 E-value=62 Score=29.70 Aligned_cols=199 Identities=12% Similarity=0.057 Sum_probs=86.6
Q ss_pred eCCCCcEEEEEeeCCEEEE-------EEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEEEEEecCC-ceEEEEEcCC
Q 019349 34 DSSTGRLCYERAVGAFSIV-------EMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLT-SILAVRLNKK 105 (342)
Q Consensus 34 d~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~~~~~~-~v~~i~~~~~ 105 (342)
|..+|..+..+.......- ++..+++.+++.+.-. ..+.+.+.|+.+++..+--..+. ...+..++++
T Consensus 16 D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~d----g~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~ 91 (386)
T PF14583_consen 16 DPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFD----GNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPD 91 (386)
T ss_dssp -TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TT----SS-EEEEEETTT-EEEE---SS-B-TTT-EE-TT
T ss_pred CCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccC----CCcceEEEEcccCEEEECccCCCCCccceEEecC
Confidence 6677755544433222221 2334566777766521 25778999999987665444332 1222333333
Q ss_pred --eEEEEE-CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeC--------------------CCCccEEE
Q 019349 106 --RLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPA--------------------STTKGSVL 162 (342)
Q Consensus 106 --~~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--------------------~~~~g~i~ 162 (342)
.++... ...++-.|+.+++....+..+..-.+.-....+.++..++..- ......|.
T Consensus 92 ~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~ 171 (386)
T PF14583_consen 92 DRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIF 171 (386)
T ss_dssp SSEEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEE
T ss_pred CCeEEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEE
Confidence 222333 4588888998886544444444433333333344555544321 00234577
Q ss_pred EEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCC---cE-EEEEEcCC-CeeEEEeccCcCceeEEEEEEecCCC
Q 019349 163 VYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQG---TI-IRVFLVSE-ATKSYSFRRGTYPSTIFSLSFGQSMQ 237 (342)
Q Consensus 163 iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg---~~-irlwd~~~-~~~~~~~~~~~~~~~v~~l~fs~d~~ 237 (342)
-.|+.+++....+. -...+..+.|||....+++=+..| .+ -|+|-+++ |.....+........+..=-|.|||.
T Consensus 172 ~idl~tG~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~ 250 (386)
T PF14583_consen 172 TIDLKTGERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGS 250 (386)
T ss_dssp EEETTT--EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS
T ss_pred EEECCCCceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCC
Confidence 77888887554443 356688899999554444433322 11 26776653 44444443332222244445788886
No 459
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=76.17 E-value=73 Score=30.33 Aligned_cols=133 Identities=15% Similarity=0.062 Sum_probs=60.2
Q ss_pred eEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCceeEEEeccc---CCeeEEEECCC
Q 019349 114 KTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQ---APLAAIVLSSN 190 (342)
Q Consensus 114 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~---~~v~~i~~s~d 190 (342)
..+++|.. |.....+......... +..-+++.+++..+ +.+..+|+. |+.+....... .-=..+..-|+
T Consensus 129 ~~~~iD~~-G~Vrw~~~~~~~~~~~--~~~l~nG~ll~~~~----~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~n 200 (477)
T PF05935_consen 129 YTYLIDNN-GDVRWYLPLDSGSDNS--FKQLPNGNLLIGSG----NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELPN 200 (477)
T ss_dssp EEEEEETT-S-EEEEE-GGGT--SS--EEE-TTS-EEEEEB----TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TT
T ss_pred eEEEECCC-ccEEEEEccCccccce--eeEcCCCCEEEecC----CceEEEcCC-CCEEEeeecCCcccccccccEECCC
Confidence 55666643 3344444322211111 34456777776544 568888875 44433332111 11244678899
Q ss_pred CCEEEEEe--------------CCCcEEEEEEcCCCeeEEEeccCc-------------------------CceeEEEEE
Q 019349 191 GMYIATAS--------------EQGTIIRVFLVSEATKSYSFRRGT-------------------------YPSTIFSLS 231 (342)
Q Consensus 191 g~~lat~s--------------~dg~~irlwd~~~~~~~~~~~~~~-------------------------~~~~v~~l~ 231 (342)
|++|+.+. .| .++ .+| .+|+.+.++.... .-.+++++.
T Consensus 201 Gn~L~l~~~~~~~~~~~~~~~~~D-~Iv-evd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~ 277 (477)
T PF05935_consen 201 GNLLILASETKYVDEDKDVDTVED-VIV-EVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSID 277 (477)
T ss_dssp S-EEEEEEETTEE-TS-EE---S--EEE-EE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEE
T ss_pred CCEEEEEeecccccCCCCccEecC-EEE-EEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccE
Confidence 99999888 23 233 556 6666655542110 013489999
Q ss_pred Eec-CCCcccEEEEEeCCCcEEEEecCCCC
Q 019349 232 FGQ-SMQFQDILVATSSSGSLHVFSPGFAI 260 (342)
Q Consensus 232 fs~-d~~~~~~l~~~s~dg~i~vwd~~~~~ 260 (342)
+.+ ++. +|+++=.-..|-..|.++++
T Consensus 278 yd~~dd~---iivSsR~~s~V~~Id~~t~~ 304 (477)
T PF05935_consen 278 YDPSDDS---IIVSSRHQSAVIKIDYRTGK 304 (477)
T ss_dssp EETTTTE---EEEEETTT-EEEEEE-TTS-
T ss_pred EeCCCCe---EEEEcCcceEEEEEECCCCc
Confidence 998 444 45444444477777755543
No 460
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=75.69 E-value=75 Score=30.24 Aligned_cols=102 Identities=10% Similarity=0.085 Sum_probs=60.8
Q ss_pred CCccEEEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCC--------CEEEEEeCCCcEEEEEEcC-CCeeE
Q 019349 145 LNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNG--------MYIATASEQGTIIRVFLVS-EATKS 215 (342)
Q Consensus 145 ~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg--------~~lat~s~dg~~irlwd~~-~~~~~ 215 (342)
.+..+|...|. ....+.-.|++.|+.+..+..|..- -+.|.|+- +.|+--|.. .+.|| |.+ .|.++
T Consensus 477 ~dssli~~dg~-~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~-svFrI-DPR~~gNKi 551 (776)
T COG5167 477 NDSSLIYLDGG-ERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDY-SVFRI-DPRARGNKI 551 (776)
T ss_pred CCcceEEecCC-CcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeeccc-ceEEe-cccccCCce
Confidence 34455555554 4566888899999999999888764 57787753 334444443 34443 433 34443
Q ss_pred EEeccCc--CceeEEEEEEecCCCcccEEEEEeCCCcEEEEe
Q 019349 216 YSFRRGT--YPSTIFSLSFGQSMQFQDILVATSSSGSLHVFS 255 (342)
Q Consensus 216 ~~~~~~~--~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd 255 (342)
....... ......|..-...| ++|++|..|.|++||
T Consensus 552 ~v~esKdY~tKn~Fss~~tTesG----yIa~as~kGDirLyD 589 (776)
T COG5167 552 KVVESKDYKTKNKFSSGMTTESG----YIAAASRKGDIRLYD 589 (776)
T ss_pred eeeeehhccccccccccccccCc----eEEEecCCCceeeeh
Confidence 3221111 11123333333344 899999999999998
No 461
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=75.22 E-value=90 Score=30.90 Aligned_cols=159 Identities=16% Similarity=0.126 Sum_probs=84.5
Q ss_pred CCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcEEE--EEe---eCCEE---EEEE---cCCCCeEEEEcCCCCCCCCC
Q 019349 7 SYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCY--ERA---VGAFS---IVEM---LYSSSLLAIVGAGEQPSLSP 74 (342)
Q Consensus 7 ~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~~~--~~~---~~~~~---~~~~---~~~~~~~~~~~~g~~~~~~d 74 (342)
+..|-.+.|.++++.+++-.++| +.+||.+.+.+.. ... ...+. .+.. ....+++++++.-. ...
T Consensus 129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~---~~k 205 (670)
T PF10395_consen 129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLS---NSK 205 (670)
T ss_pred ccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcC---CCc
Confidence 45788999999999998888888 5999983332211 110 01111 1111 11235555555410 012
Q ss_pred CeEEEEEC-CCCcEEEEEe---c--CC-ceEEEEEcCCeEEEEECCeEEEEECCCCceeeEEeCCC--CC--ceEEEEee
Q 019349 75 RRLCLFNT-TTGTALRELN---F--LT-SILAVRLNKKRLVIVLREKTYIYDANTLAILDTIDTVP--NL--KGLCAFSP 143 (342)
Q Consensus 75 ~~i~iwd~-~~~~~~~~~~---~--~~-~v~~i~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~--~~--~~~~~~~~ 143 (342)
-..+++.+ .....+.++. . .. .-..++..-..++...+++|.+|++.+.+..+++..+. +. ..++++.+
T Consensus 206 ~~ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~~ 285 (670)
T PF10395_consen 206 LSYKLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQLSKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLKP 285 (670)
T ss_pred EEEEEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEEeCCEEEEEEcCCceEEEEEEechhhccccccceEeec
Confidence 34577776 1222222222 1 11 11223334344444568899999999998888876541 11 23444444
Q ss_pred CCCccEEEEeCCCCccEEEEEEccCCcee
Q 019349 144 SLNACFLAVPASTTKGSVLVYNVMELHSH 172 (342)
Q Consensus 144 ~~~~~~l~~~~~~~~g~i~iwd~~~~~~~ 172 (342)
-..++.|.+. ++.|.+.|+.-...+
T Consensus 286 ~s~nRvLLs~----~nkIyLld~~~~siL 310 (670)
T PF10395_consen 286 PSPNRVLLSV----NNKIYLLDLKFESIL 310 (670)
T ss_pred CCCCeEEEEc----CCEEEEEeehhhhhh
Confidence 3333445443 478999998644433
No 462
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=75.08 E-value=51 Score=27.99 Aligned_cols=101 Identities=15% Similarity=0.111 Sum_probs=63.0
Q ss_pred EEeeCCCccEEEEeCCCCccEEEEEE--ccCCc-----eeEEEec---cc-CCeeEEEECCCCCEEEEEeCCCcEEEEEE
Q 019349 140 AFSPSLNACFLAVPASTTKGSVLVYN--VMELH-----SHCEIDA---HQ-APLAAIVLSSNGMYIATASEQGTIIRVFL 208 (342)
Q Consensus 140 ~~~~~~~~~~l~~~~~~~~g~i~iwd--~~~~~-----~~~~~~~---h~-~~v~~i~~s~dg~~lat~s~dg~~irlwd 208 (342)
+++++.+...+.+..+ .+-+|.-|| ..++. .+..++- .. ...-.+++..+|++.++.-.-|++ .-.|
T Consensus 162 gl~Wd~d~K~fY~iDs-ln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V-~~~d 239 (310)
T KOG4499|consen 162 GLAWDSDAKKFYYIDS-LNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTV-QKVD 239 (310)
T ss_pred cccccccCcEEEEEcc-CceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEE-EEEC
Confidence 5566666666666654 567787777 44443 2222221 11 122346667788888887777775 5799
Q ss_pred cCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEe
Q 019349 209 VSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATS 246 (342)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s 246 (342)
..+|+.+.++.-. ...|+|++|--.+- +.|.+..
T Consensus 240 p~tGK~L~eiklP--t~qitsccFgGkn~--d~~yvT~ 273 (310)
T KOG4499|consen 240 PTTGKILLEIKLP--TPQITSCCFGGKNL--DILYVTT 273 (310)
T ss_pred CCCCcEEEEEEcC--CCceEEEEecCCCc--cEEEEEe
Confidence 9999999998654 33599999964422 2454444
No 463
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=74.95 E-value=58 Score=28.59 Aligned_cols=192 Identities=11% Similarity=0.084 Sum_probs=107.6
Q ss_pred CEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEEEEEecCC--ceEEEEEcCCeEEEEE---CCeEEEEECCC
Q 019349 48 AFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLT--SILAVRLNKKRLVIVL---REKTYIYDANT 122 (342)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~~~~~~--~v~~i~~~~~~~~~~~---d~~i~i~d~~~ 122 (342)
.+..+.+.++.+.+..+.. ...-.+|=..+|+.+.++.... ..-.|..-.++.++.+ +++++++.+..
T Consensus 87 nvS~LTynp~~rtLFav~n-------~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~ 159 (316)
T COG3204 87 NVSSLTYNPDTRTLFAVTN-------KPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDA 159 (316)
T ss_pred cccceeeCCCcceEEEecC-------CCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcC
Confidence 4566677777787777765 3445666667899999887654 4556676666666665 56788877754
Q ss_pred Cceee-----EE--eCC-CCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCce---eEEEecc-------cCCeeE
Q 019349 123 LAILD-----TI--DTV-PNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHS---HCEIDAH-------QAPLAA 184 (342)
Q Consensus 123 ~~~~~-----~~--~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~---~~~~~~h-------~~~v~~ 184 (342)
...+. .+ ... ....+.-.+++++....+.++- ...-+.||....... +.....+ -..|.+
T Consensus 160 ~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aK--Er~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSg 237 (316)
T COG3204 160 DTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAK--ERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSG 237 (316)
T ss_pred CccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEE--ccCCcEEEEEecCCcccccccccCcccccceEeecccc
Confidence 32111 11 111 2246778889988777766654 344566665543321 1111111 235778
Q ss_pred EEECC-CCCEEEEEeCCCcEEEEEEcCCCeeEEEe--ccCcCc-----eeEEEEEEecCCCcccEEEEEeCCCcEEEE
Q 019349 185 IVLSS-NGMYIATASEQGTIIRVFLVSEATKSYSF--RRGTYP-----STIFSLSFGQSMQFQDILVATSSSGSLHVF 254 (342)
Q Consensus 185 i~~s~-dg~~lat~s~dg~~irlwd~~~~~~~~~~--~~~~~~-----~~v~~l~fs~d~~~~~~l~~~s~dg~i~vw 254 (342)
+.|++ .+++|+-+.+++.+ .-.|.. |..+..+ .++.+. ..--.++..++|. |...|+-+-.+.|
T Consensus 238 l~~~~~~~~LLVLS~ESr~l-~Evd~~-G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~----lYIvSEPnlfy~F 309 (316)
T COG3204 238 LEFNAITNSLLVLSDESRRL-LEVDLS-GEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGN----LYIVSEPNLFYRF 309 (316)
T ss_pred ceecCCCCcEEEEecCCceE-EEEecC-CCeeeeEEeccCCCCCcccCCCcceeEECCCCC----EEEEecCCcceec
Confidence 88886 55666666666654 356653 4433332 222111 0134566666665 4445555544444
No 464
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=74.70 E-value=57 Score=28.41 Aligned_cols=114 Identities=11% Similarity=0.029 Sum_probs=73.5
Q ss_pred EEEEeeCCCccEEEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEE
Q 019349 138 LCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYS 217 (342)
Q Consensus 138 ~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~ 217 (342)
-..+++.+|+..-.++. ..|.|--.|-.+++....--+-...-..|...|||..-++-+.. . |.-.|-++.+. .+
T Consensus 64 p~dvapapdG~VWft~q--g~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-a-I~R~dpkt~ev-t~ 138 (353)
T COG4257 64 PFDVAPAPDGAVWFTAQ--GTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-A-IGRLDPKTLEV-TR 138 (353)
T ss_pred ccccccCCCCceEEecC--ccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-e-eEEecCcccce-EE
Confidence 44567778887666554 45777778888887665444445556778899999877775433 2 44567665543 23
Q ss_pred e--ccCcCceeEEEEEEecCCCcccEEEEEeC---------CCcEEEEecCCC
Q 019349 218 F--RRGTYPSTIFSLSFGQSMQFQDILVATSS---------SGSLHVFSPGFA 259 (342)
Q Consensus 218 ~--~~~~~~~~v~~l~fs~d~~~~~~l~~~s~---------dg~i~vwd~~~~ 259 (342)
| ...+..+......|.++|. +..++.. .+.|++|+...+
T Consensus 139 f~lp~~~a~~nlet~vfD~~G~---lWFt~q~G~yGrLdPa~~~i~vfpaPqG 188 (353)
T COG4257 139 FPLPLEHADANLETAVFDPWGN---LWFTGQIGAYGRLDPARNVISVFPAPQG 188 (353)
T ss_pred eecccccCCCcccceeeCCCcc---EEEeeccccceecCcccCceeeeccCCC
Confidence 3 2223345688899999998 7777653 245777765543
No 465
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=74.31 E-value=33 Score=27.45 Aligned_cols=33 Identities=21% Similarity=0.283 Sum_probs=25.7
Q ss_pred eEEEEEEecCCC---cccEEEEEeCCCcEEEEecCC
Q 019349 226 TIFSLSFGQSMQ---FQDILVATSSSGSLHVFSPGF 258 (342)
Q Consensus 226 ~v~~l~fs~d~~---~~~~l~~~s~dg~i~vwd~~~ 258 (342)
.+..++|||-|- .+-+||+-+.+|.|.||.-..
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 588999999541 113899999999999998654
No 466
>PF09826 Beta_propel: Beta propeller domain; InterPro: IPR019198 This entry consists of predicted secreted proteins containing a C-terminal beta-propeller domain distantly related to WD-40 repeats.
Probab=73.74 E-value=89 Score=30.17 Aligned_cols=101 Identities=14% Similarity=0.186 Sum_probs=60.0
Q ss_pred CCCCEEEEEcCCcEEEEeCCC---CcEEEEEeeCCEEEEEEcCCCCeEEEEcCCCCC------------------CCCCC
Q 019349 17 QDNSGFALSTKDGFKIFDSST---GRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQP------------------SLSPR 75 (342)
Q Consensus 17 ~d~~~la~g~~~g~~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~------------------~~~d~ 75 (342)
-||++|.+..++.+.|++..+ .++.-......- .-++.-+.+.+++++..... ....-
T Consensus 20 TDG~yIY~v~~~~l~Iida~p~~~~~~~s~I~~~~~-~~eLyl~gdrLvVi~~~~~~~~~~~~~~~~~~~~~~~~~~~~t 98 (521)
T PF09826_consen 20 TDGEYIYVVSGGRLYIIDAYPAEEMKVVSRIDLDGS-PQELYLDGDRLVVIGSSYEYYPREPDIDSESGDTPYYYYKSST 98 (521)
T ss_pred ECCCEEEEEeCCEEEEEECCCchhceEEEEEecCCC-hhheEEcCCEEEEEEeccccccccccccccccccccccCCcee
Confidence 389999999888899999843 233333322222 33344456666666643211 11234
Q ss_pred eEEEEECCC---CcEEEEEecCCceEEEEEcCCeEEEEECCeEEEE
Q 019349 76 RLCLFNTTT---GTALRELNFLTSILAVRLNKKRLVIVLREKTYIY 118 (342)
Q Consensus 76 ~i~iwd~~~---~~~~~~~~~~~~v~~i~~~~~~~~~~~d~~i~i~ 118 (342)
.+.++|+.. .+.+.++...+...+.....+.+.+++...+.++
T Consensus 99 ~i~vYDIsD~~~P~~~~~~~~~G~yvsSR~ig~~vy~Vt~~~~~~~ 144 (521)
T PF09826_consen 99 KITVYDISDPSNPKLLREIEIEGSYVSSRKIGDYVYLVTNSYPNYY 144 (521)
T ss_pred EEEEEECCCCCCceEEEEEEeeeEEEeEEEECCEEEEEEecCCccc
Confidence 588999754 3456677777777776666777766665444444
No 467
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=73.27 E-value=9.8 Score=20.12 Aligned_cols=25 Identities=32% Similarity=0.529 Sum_probs=19.9
Q ss_pred eEEEEEEecCCCcccEEEEEeCCCcEEEEe
Q 019349 226 TIFSLSFGQSMQFQDILVATSSSGSLHVFS 255 (342)
Q Consensus 226 ~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd 255 (342)
.|.+++.++. +++++.+.+.+|+|.
T Consensus 3 ~i~aia~g~~-----~vavaTS~~~lRifs 27 (27)
T PF12341_consen 3 EIEAIAAGDS-----WVAVATSAGYLRIFS 27 (27)
T ss_pred eEEEEEccCC-----EEEEEeCCCeEEecC
Confidence 4777887643 899999999999983
No 468
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=72.84 E-value=80 Score=29.26 Aligned_cols=105 Identities=11% Similarity=0.092 Sum_probs=60.5
Q ss_pred EEeeCCCccEEEEeCCCCccEEEE-EEccCCc-eeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCe----
Q 019349 140 AFSPSLNACFLAVPASTTKGSVLV-YNVMELH-SHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEAT---- 213 (342)
Q Consensus 140 ~~~~~~~~~~l~~~~~~~~g~i~i-wd~~~~~-~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~---- 213 (342)
.+...+++.+++++. .|.+.. ||-.... ..... .-...++.+.+.++|..++++ ..|. + +|....++
T Consensus 243 ~v~~~~dG~~~~vg~---~G~~~~s~d~G~~~W~~~~~-~~~~~l~~v~~~~dg~l~l~g-~~G~-l-~~S~d~G~~~~~ 315 (398)
T PLN00033 243 TVNRSPDGDYVAVSS---RGNFYLTWEPGQPYWQPHNR-ASARRIQNMGWRADGGLWLLT-RGGG-L-YVSKGTGLTEED 315 (398)
T ss_pred eEEEcCCCCEEEEEC---CccEEEecCCCCcceEEecC-CCccceeeeeEcCCCCEEEEe-CCce-E-EEecCCCCcccc
Confidence 344556666666654 344332 3322110 11111 224568899999999877665 5676 4 67766664
Q ss_pred -eEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEe
Q 019349 214 -KSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFS 255 (342)
Q Consensus 214 -~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd 255 (342)
...+.........+.++.|.+++. +.+++..|.+....
T Consensus 316 ~~f~~~~~~~~~~~l~~v~~~~d~~----~~a~G~~G~v~~s~ 354 (398)
T PLN00033 316 FDFEEADIKSRGFGILDVGYRSKKE----AWAAGGSGILLRST 354 (398)
T ss_pred cceeecccCCCCcceEEEEEcCCCc----EEEEECCCcEEEeC
Confidence 233333221223488999998887 66677778776664
No 469
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.43 E-value=41 Score=31.39 Aligned_cols=93 Identities=12% Similarity=0.114 Sum_probs=55.2
Q ss_pred cEEEEEEccCCc---eeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeE--EEeccCcCceeEEEEEEe
Q 019349 159 GSVLVYNVMELH---SHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKS--YSFRRGTYPSTIFSLSFG 233 (342)
Q Consensus 159 g~i~iwd~~~~~---~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~--~~~~~~~~~~~v~~l~fs 233 (342)
|.+.-|.+.... ++..-...+++|.+|.||+|.+.||.--.|.+ |.+++....+.. ...........|....|+
T Consensus 43 ggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~-v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~ 121 (657)
T KOG2377|consen 43 GGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKT-VDFCNFIPDNSQLEYTQECKTKNANILGFCWT 121 (657)
T ss_pred CCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCce-EEEEecCCCchhhHHHHHhccCcceeEEEEEe
Confidence 445666554322 12222235679999999999999999988887 578887433221 111111223458888888
Q ss_pred cCCCcccEEEEEeCCCcEEEEecC
Q 019349 234 QSMQFQDILVATSSSGSLHVFSPG 257 (342)
Q Consensus 234 ~d~~~~~~l~~~s~dg~i~vwd~~ 257 (342)
.... +|--+..| +-+|.+.
T Consensus 122 ~s~e----~A~i~~~G-~e~y~v~ 140 (657)
T KOG2377|consen 122 SSTE----IAFITDQG-IEFYQVL 140 (657)
T ss_pred cCee----EEEEecCC-eEEEEEc
Confidence 7643 55555443 4555543
No 470
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=72.22 E-value=74 Score=28.57 Aligned_cols=104 Identities=6% Similarity=0.135 Sum_probs=52.1
Q ss_pred ceEEEEEcCCeEEEEE--CCeEEEEECCCCce---eeEEe--CCCCCceEEEEeeCCC----c-cEEEEeC-----CCCc
Q 019349 96 SILAVRLNKKRLVIVL--REKTYIYDANTLAI---LDTID--TVPNLKGLCAFSPSLN----A-CFLAVPA-----STTK 158 (342)
Q Consensus 96 ~v~~i~~~~~~~~~~~--d~~i~i~d~~~~~~---~~~~~--~~~~~~~~~~~~~~~~----~-~~l~~~~-----~~~~ 158 (342)
..++|++.|+..++++ .++|++++ .++.. +..+. ......++..++.+|+ + .++++.. ....
T Consensus 3 ~P~~~a~~pdG~l~v~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~ 81 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVAERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND 81 (331)
T ss_dssp SEEEEEEETTSCEEEEETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred CceEEEEeCCCcEEEEeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence 3567888888544444 67999999 44443 22221 1123456777777773 2 2333331 0011
Q ss_pred cEEEEEEccCC-------cee-EEEec---ccCCeeEEEECCCCCEEEEEeCC
Q 019349 159 GSVLVYNVMEL-------HSH-CEIDA---HQAPLAAIVLSSNGMYIATASEQ 200 (342)
Q Consensus 159 g~i~iwd~~~~-------~~~-~~~~~---h~~~v~~i~~s~dg~~lat~s~d 200 (342)
..|.-|..... +.+ ..+.. ....-..|+|.|||.+.++.++.
T Consensus 82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~ 134 (331)
T PF07995_consen 82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDG 134 (331)
T ss_dssp EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-T
T ss_pred eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCC
Confidence 23444554433 111 12222 23345679999999877776653
No 471
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=71.01 E-value=34 Score=24.12 Aligned_cols=47 Identities=6% Similarity=0.083 Sum_probs=26.9
Q ss_pred CCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEE-eCCCcEEE
Q 019349 200 QGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVAT-SSSGSLHV 253 (342)
Q Consensus 200 dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~-s~dg~i~v 253 (342)
+|+++ -||..+++...-+ .+ -.-.+.+++++|+. +|+.+ +....|+=
T Consensus 36 ~GRll-~ydp~t~~~~vl~-~~--L~fpNGVals~d~~---~vlv~Et~~~Ri~r 83 (89)
T PF03088_consen 36 TGRLL-RYDPSTKETTVLL-DG--LYFPNGVALSPDES---FVLVAETGRYRILR 83 (89)
T ss_dssp -EEEE-EEETTTTEEEEEE-EE--ESSEEEEEE-TTSS---EEEEEEGGGTEEEE
T ss_pred CcCEE-EEECCCCeEEEeh-hC--CCccCeEEEcCCCC---EEEEEeccCceEEE
Confidence 57776 7999888643222 22 12357899999998 44443 44444433
No 472
>KOG2109 consensus WD40 repeat protein [General function prediction only]
Probab=70.16 E-value=5.2 Score=38.61 Aligned_cols=83 Identities=19% Similarity=0.302 Sum_probs=59.7
Q ss_pred eeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEE--------EEc-CCCeeEEEeccCcCceeEEEEEEecCCCcccE
Q 019349 171 SHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRV--------FLV-SEATKSYSFRRGTYPSTIFSLSFGQSMQFQDI 241 (342)
Q Consensus 171 ~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irl--------wd~-~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~ 241 (342)
.++.+-+|..+...+.|+++++.+.++...++...+ |+. +.-+.++++.++...++|..++|+.|.+ +
T Consensus 484 vvqh~vahs~~gv~~Ef~~~~~l~lSad~~e~ef~~f~V~Ph~~wsslaav~hly~l~rG~TsaKv~~~afs~dsr---w 560 (788)
T KOG2109|consen 484 VVQHYVAHSDPGVYIEFSPDQRLVLSADANENEFNIFLVMPHATWSSLAAVQHLYKLNRGSTSAKVVSTAFSEDSR---W 560 (788)
T ss_pred eeEEEeeccCccceeeecccccceecccccccccceEEeecccccHHHhhhhhhhhccCCCccceeeeeEeecchh---h
Confidence 345566788999999999999999999876654222 332 1223445555666677899999999998 8
Q ss_pred EEEEeCCCcEEEEec
Q 019349 242 LVATSSSGSLHVFSP 256 (342)
Q Consensus 242 l~~~s~dg~i~vwd~ 256 (342)
++.....+|=+|+.+
T Consensus 561 ~A~~t~~~TthVfk~ 575 (788)
T KOG2109|consen 561 LAITTNHATTHVFKV 575 (788)
T ss_pred hhhhhcCCceeeeee
Confidence 888777777777654
No 473
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=68.19 E-value=95 Score=28.23 Aligned_cols=180 Identities=14% Similarity=0.090 Sum_probs=0.0
Q ss_pred CeEEEEECCCCceeeEEeCCCCCceEEEEe--eCCCccEEEEeCCCCccEEEEEEccCCceeEEEeccc--CCeeEEEEC
Q 019349 113 EKTYIYDANTLAILDTIDTVPNLKGLCAFS--PSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQ--APLAAIVLS 188 (342)
Q Consensus 113 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~--~~v~~i~~s 188 (342)
..+...+..++..+................ ...++...+... +|.|.-.|..++..+-....-. ..+..=.+.
T Consensus 33 ~~~~~~~~~~g~~~W~~~~~~~~~~~~~~~~~~~~dg~v~~~~~---~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~ 109 (370)
T COG1520 33 DLVAVANNTSGTLLWSVSLGSGGGGIYAGPAPADGDGTVYVGTR---DGNIFALNPDTGLVKWSYPLLGAVAQLSGPILG 109 (370)
T ss_pred CceEEEcccCcceeeeeecccCccceEeccccEeeCCeEEEecC---CCcEEEEeCCCCcEEecccCcCcceeccCceEE
Q ss_pred CCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCc
Q 019349 189 SNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRT 268 (342)
Q Consensus 189 ~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~ 268 (342)
.+|+ |..++.+|.++ .+|..+|+++..+..... ..+..-..-.++. +...+.+|.++-.+.+++..
T Consensus 110 ~~G~-i~~g~~~g~~y-~ld~~~G~~~W~~~~~~~-~~~~~~~v~~~~~----v~~~s~~g~~~al~~~tG~~------- 175 (370)
T COG1520 110 SDGK-IYVGSWDGKLY-ALDASTGTLVWSRNVGGS-PYYASPPVVGDGT----VYVGTDDGHLYALNADTGTL------- 175 (370)
T ss_pred eCCe-EEEecccceEE-EEECCCCcEEEEEecCCC-eEEecCcEEcCcE----EEEecCCCeEEEEEccCCcE-------
Q ss_pred cccccccccccccccccccc---cceeeeccCCCccccEEEEEEe--CCcEEEEEEecCCCCe
Q 019349 269 SSILGSILPESVNEVLDPAD---HHVLRNAFPAGVKRASVSVITY--NGYFVEYIFSINNCCE 326 (342)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~--dg~v~~~~~~~~~~~~ 326 (342)
.|.... .......-+. .....++.++. ++ ++|.++++.+..
T Consensus 176 --------------~W~~~~~~~~~~~~~~~~~-~~~~~vy~~~~~~~~--~~~a~~~~~G~~ 221 (370)
T COG1520 176 --------------KWTYETPAPLSLSIYGSPA-IASGTVYVGSDGYDG--ILYALNAEDGTL 221 (370)
T ss_pred --------------EEEEecCCccccccccCce-eecceEEEecCCCcc--eEEEEEccCCcE
No 474
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.70 E-value=1.8e+02 Score=30.76 Aligned_cols=74 Identities=7% Similarity=-0.006 Sum_probs=45.4
Q ss_pred ecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEe
Q 019349 176 DAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFS 255 (342)
Q Consensus 176 ~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd 255 (342)
.-|..++.+..+......+. +...+.++ .|+.........+.... ...++++. .++++..||++.+||
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~-------~~~~~~~~---~~v~~h~Dgs~~fWd 262 (993)
T KOG1983|consen 195 SLIEYESLQVLYYSPTKILI-GFNRGLVV-IKDRASKYVQSAYLPNG-------QLESRDGS---HFVSYHTDGSYAFWD 262 (993)
T ss_pred cccccccceeeeecCCCcce-eeeeeeee-ehhcccccchhhccccc-------ccCccCCc---eEEEEEecCCEEeee
Confidence 34566677776665544433 33345554 67765444333332211 11277887 899999999999999
Q ss_pred cCCCCC
Q 019349 256 PGFAIN 261 (342)
Q Consensus 256 ~~~~~~ 261 (342)
+..+..
T Consensus 263 ~s~g~~ 268 (993)
T KOG1983|consen 263 VSSGKL 268 (993)
T ss_pred cCCCce
Confidence 988643
No 475
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=66.14 E-value=2e+02 Score=31.09 Aligned_cols=37 Identities=19% Similarity=0.184 Sum_probs=22.2
Q ss_pred eEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEec
Q 019349 183 AAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFR 219 (342)
Q Consensus 183 ~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~ 219 (342)
.+|+++++|.+.++-++..++=|+=-+.+...+.-+.
T Consensus 596 r~Iavg~~G~lyvaEsD~rriNrvr~~~tdg~i~ila 632 (1899)
T KOG4659|consen 596 RDIAVGTDGALYVAESDGRRINRVRKLSTDGTISILA 632 (1899)
T ss_pred hceeecCCceEEEEeccchhhhheEEeccCceEEEec
Confidence 6799999998777766544433343444433555553
No 476
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=65.93 E-value=1.9e+02 Score=30.79 Aligned_cols=177 Identities=13% Similarity=0.145 Sum_probs=84.9
Q ss_pred eEEEEECCCCcEEEEEecCC--ceEEEEE---c--------CCeEEEEE----------CCeEEEEECCC-----Cc---
Q 019349 76 RLCLFNTTTGTALRELNFLT--SILAVRL---N--------KKRLVIVL----------REKTYIYDANT-----LA--- 124 (342)
Q Consensus 76 ~i~iwd~~~~~~~~~~~~~~--~v~~i~~---~--------~~~~~~~~----------d~~i~i~d~~~-----~~--- 124 (342)
.|.+....+.+.+..++++. .|.+++. . +..+++++ -|.++|||+-. ++
T Consensus 1005 ~i~LisP~sw~vi~~iefq~~E~v~~~k~v~L~~~~t~~~~k~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgkP~t 1084 (1366)
T KOG1896|consen 1005 SIQLISPESWEVIDKIEFQENEHVLHMKYVILDDEETTKGKKPYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGKPFT 1084 (1366)
T ss_pred eeEEecCCccccccccccCccceeeEEEEEEEEecccccCCcceEEEEEeecccccccCcccEEEEEEEEecCCCCCCcc
Confidence 46666666666665555543 3444332 1 12344433 36899999832 22
Q ss_pred --eeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCc
Q 019349 125 --ILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGT 202 (342)
Q Consensus 125 --~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~ 202 (342)
.++.+-.......+.+++. -+|.++.+. ...|.||+++....+.-..--.-++.-.....=.++|..|.--..
T Consensus 1085 ~~KlKel~~eE~KGtVsavce-V~G~l~~~~----GqKI~v~~l~r~~~ligVaFiD~~~yv~s~~~vknlIl~gDV~ks 1159 (1366)
T KOG1896|consen 1085 KNKLKELYIEEQKGTVSAVCE-VRGHLLSSQ----GQKIIVRKLDRDSELIGVAFIDLPLYVHSMKVVKNLILAGDVMKS 1159 (1366)
T ss_pred cceeeeeehhhcccceEEEEE-eccEEEEcc----CcEEEEEEeccCCcceeeEEeccceeEEehhhhhhheehhhhhhc
Confidence 1222222222223444443 234444433 367999999443221111001111111112222345555443322
Q ss_pred EEEEEEcC-CCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCC
Q 019349 203 IIRVFLVS-EATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFA 259 (342)
Q Consensus 203 ~irlwd~~-~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~ 259 (342)
|.+.-.+ .+..+.-+.+...+-.++++.|--||. .=.++++..+++|++|-....
T Consensus 1160 -isfl~fqeep~rlsL~srd~~~l~v~s~EFLVdg~-~L~flvsDa~rNi~vy~Y~Pe 1215 (1366)
T KOG1896|consen 1160 -ISFLGFQEEPYRLSLLSRDFEPLNVYSTEFLVDGS-NLSFLVSDADRNIHVYMYAPE 1215 (1366)
T ss_pred -eEEEEEccCceEEEEeecCCchhhceeeeeEEcCC-eeEEEEEcCCCcEEEEEeCCC
Confidence 2333322 233444444444445588888876653 016788899999999976543
No 477
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=65.79 E-value=18 Score=19.01 Aligned_cols=25 Identities=24% Similarity=0.319 Sum_probs=17.8
Q ss_pred EEEEEEecCCCcccEEEEEeCCCcEEEE
Q 019349 227 IFSLSFGQSMQFQDILVATSSSGSLHVF 254 (342)
Q Consensus 227 v~~l~fs~d~~~~~~l~~~s~dg~i~vw 254 (342)
...++.+++|. ++++=+....|++|
T Consensus 4 P~gvav~~~g~---i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 4 PHGVAVDSDGN---IYVADSGNHRVQVF 28 (28)
T ss_dssp EEEEEEETTSE---EEEEECCCTEEEEE
T ss_pred CcEEEEeCCCC---EEEEECCCCEEEEC
Confidence 45678888887 66666667777765
No 478
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=65.78 E-value=1.2e+02 Score=28.61 Aligned_cols=56 Identities=9% Similarity=0.125 Sum_probs=35.7
Q ss_pred CCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCee--EEEec---cCcCceeEEEEEEecCC
Q 019349 180 APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATK--SYSFR---RGTYPSTIFSLSFGQSM 236 (342)
Q Consensus 180 ~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~--~~~~~---~~~~~~~v~~l~fs~d~ 236 (342)
...+.|+|.|||++|++--..|++ ++++..++.. +..+. ......-+..|+|+|+-
T Consensus 30 ~~Pw~maflPDG~llVtER~~G~I-~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 30 NKPWALLWGPDNQLWVTERATGKI-LRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CCceEEEEcCCCeEEEEEecCCEE-EEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 446889999999988886556875 6777655432 22221 11113348899999884
No 479
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=65.59 E-value=18 Score=19.44 Aligned_cols=25 Identities=12% Similarity=0.238 Sum_probs=18.6
Q ss_pred EEEEEeCCCcEEEEEEcCCCeeEEEe
Q 019349 193 YIATASEQGTIIRVFLVSEATKSYSF 218 (342)
Q Consensus 193 ~lat~s~dg~~irlwd~~~~~~~~~~ 218 (342)
.+..++.+|.+ ..+|..+|+.+.++
T Consensus 8 ~v~~~~~~g~l-~a~d~~~G~~~W~~ 32 (33)
T smart00564 8 TVYVGSTDGTL-YALDAKTGEILWTY 32 (33)
T ss_pred EEEEEcCCCEE-EEEEcccCcEEEEc
Confidence 57777788875 68999888876653
No 480
>smart00284 OLF Olfactomedin-like domains.
Probab=65.48 E-value=89 Score=26.92 Aligned_cols=142 Identities=11% Similarity=0.043 Sum_probs=78.5
Q ss_pred CCeEEEEECCCCceeeEEeCCC---C--------CceEEEEeeCCCccEEEEeCCCCccEEEEEEc--cCCceeEEEec-
Q 019349 112 REKTYIYDANTLAILDTIDTVP---N--------LKGLCAFSPSLNACFLAVPASTTKGSVLVYNV--MELHSHCEIDA- 177 (342)
Q Consensus 112 d~~i~i~d~~~~~~~~~~~~~~---~--------~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~--~~~~~~~~~~~- 177 (342)
...|.-||+.+.........+. + ...-+.++.+.+|..++++.....|.|.|=.+ .+.+...++..
T Consensus 93 s~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~~g~ivvSkLnp~tL~ve~tW~T~ 172 (255)
T smart00284 93 SHDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQNAGKIVISKLNPATLTIENTWITT 172 (255)
T ss_pred CccEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEeccCCCCCEEEEeeCcccceEEEEEEcC
Confidence 3467778887765542221111 1 12335677788888888877545577776443 44555555432
Q ss_pred ccCCeeEEEECCCCCEEEEEe---CCCcEEEEEEcCCCeeEEE-eccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEE
Q 019349 178 HQAPLAAIVLSSNGMYIATAS---EQGTIIRVFLVSEATKSYS-FRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHV 253 (342)
Q Consensus 178 h~~~v~~i~~s~dg~~lat~s---~dg~~irlwd~~~~~~~~~-~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~v 253 (342)
+..+=.+=+|--.|.+-++-| .+.++-..+|+.+++.... +.-......+..|..+|..+ .| -+=++|.+-.
T Consensus 173 ~~k~sa~naFmvCGvLY~~~s~~~~~~~I~yayDt~t~~~~~~~i~f~n~y~~~s~l~YNP~d~---~L-Y~wdng~~l~ 248 (255)
T smart00284 173 YNKRSASNAFMICGILYVTRSLGSKGEKVFYAYDTNTGKEGHLDIPFENMYEYISMLDYNPNDR---KL-YAWNNGHLVH 248 (255)
T ss_pred CCcccccccEEEeeEEEEEccCCCCCcEEEEEEECCCCccceeeeeeccccccceeceeCCCCC---eE-EEEeCCeEEE
Confidence 111111223444566655554 3445556889987764322 11111234578899999887 44 4456677777
Q ss_pred EecC
Q 019349 254 FSPG 257 (342)
Q Consensus 254 wd~~ 257 (342)
|++.
T Consensus 249 Y~v~ 252 (255)
T smart00284 249 YDIA 252 (255)
T ss_pred EEEE
Confidence 7764
No 481
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=65.11 E-value=90 Score=26.83 Aligned_cols=141 Identities=13% Similarity=0.092 Sum_probs=80.9
Q ss_pred CCeEEEEECCCCceeeEEeCCCC-----------CceEEEEeeCCCccEEEEeCCCCccEEEEE--EccCCceeEEEec-
Q 019349 112 REKTYIYDANTLAILDTIDTVPN-----------LKGLCAFSPSLNACFLAVPASTTKGSVLVY--NVMELHSHCEIDA- 177 (342)
Q Consensus 112 d~~i~i~d~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~l~~~~~~~~g~i~iw--d~~~~~~~~~~~~- 177 (342)
...|.-||+.+.........+.. +..-+.++.+.+|..++++..+.+|.|.|= |..+.+...++..
T Consensus 88 s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~g~ivvskld~~tL~v~~tw~T~ 167 (250)
T PF02191_consen 88 SRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNNGNIVVSKLDPETLSVEQTWNTS 167 (250)
T ss_pred CceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCCCcEEEEeeCcccCceEEEEEec
Confidence 35677777777655533322111 123456777888888888776445666664 4455555555532
Q ss_pred -ccCCeeEEEECCCCCEEEEEeCC---CcEEEEEEcCCCeeEEE-eccCcCceeEEEEEEecCCCcccEEEEEeCCCcEE
Q 019349 178 -HQAPLAAIVLSSNGMYIATASEQ---GTIIRVFLVSEATKSYS-FRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLH 252 (342)
Q Consensus 178 -h~~~v~~i~~s~dg~~lat~s~d---g~~irlwd~~~~~~~~~-~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~ 252 (342)
.+..+.. +|--.|-+-++-+.+ ..+...+|+.+++.... +.-......+..|.++|..+ .|- +=++|.+-
T Consensus 168 ~~k~~~~n-aFmvCGvLY~~~s~~~~~~~I~yafDt~t~~~~~~~i~f~~~~~~~~~l~YNP~dk---~LY-~wd~G~~v 242 (250)
T PF02191_consen 168 YPKRSAGN-AFMVCGVLYATDSYDTRDTEIFYAFDTYTGKEEDVSIPFPNPYGNISMLSYNPRDK---KLY-AWDNGYQV 242 (250)
T ss_pred cCchhhcc-eeeEeeEEEEEEECCCCCcEEEEEEECCCCceeceeeeeccccCceEeeeECCCCC---eEE-EEECCeEE
Confidence 1222222 455567777776665 45656899988765321 11111123478899999887 443 44556666
Q ss_pred EEecC
Q 019349 253 VFSPG 257 (342)
Q Consensus 253 vwd~~ 257 (342)
.|++.
T Consensus 243 ~Y~v~ 247 (250)
T PF02191_consen 243 TYDVR 247 (250)
T ss_pred EEEEE
Confidence 66654
No 482
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=63.85 E-value=1.4e+02 Score=28.63 Aligned_cols=75 Identities=16% Similarity=0.203 Sum_probs=44.7
Q ss_pred EEeeCCCccEEEEeCCCCccEEEEEEc----------cCCceeE---EEe--------cccCCeeEEEECCCC---CEEE
Q 019349 140 AFSPSLNACFLAVPASTTKGSVLVYNV----------MELHSHC---EID--------AHQAPLAAIVLSSNG---MYIA 195 (342)
Q Consensus 140 ~~~~~~~~~~l~~~~~~~~g~i~iwd~----------~~~~~~~---~~~--------~h~~~v~~i~~s~dg---~~la 195 (342)
-+..++.|..++.+| .+|-+.+ .+ +.++++. ++. ...-.+..++|+|+. ..|.
T Consensus 108 ~vl~s~~GS~VaL~G--~~Gi~vM-eLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~ 184 (741)
T KOG4460|consen 108 QVLLSPTGSHVALIG--IKGLMVM-ELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV 184 (741)
T ss_pred EEEecCCCceEEEec--CCeeEEE-EchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence 445567788888888 4674444 33 2333221 111 111245667888865 5666
Q ss_pred EEeCCCcEEEEEEcCCCeeEEEe
Q 019349 196 TASEQGTIIRVFLVSEATKSYSF 218 (342)
Q Consensus 196 t~s~dg~~irlwd~~~~~~~~~~ 218 (342)
.=+.|. +||+||......++..
T Consensus 185 iL~sdn-viRiy~lS~~telylq 206 (741)
T KOG4460|consen 185 LLTSDN-VIRIYSLSEPTELYLQ 206 (741)
T ss_pred EEecCc-EEEEEecCCcchhhcc
Confidence 666776 4799999887776543
No 483
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=63.81 E-value=54 Score=30.54 Aligned_cols=23 Identities=13% Similarity=0.122 Sum_probs=17.9
Q ss_pred CccccEEEEEEeCCcEEEEEEec
Q 019349 299 GVKRASVSVITYNGYFVEYIFSI 321 (342)
Q Consensus 299 ~~~~~~l~~~~~dg~v~~~~~~~ 321 (342)
++..+.|++.+.+|.|++|++..
T Consensus 198 d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 198 DPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp ETTTTEEEEEESSE-EEEEEE-S
T ss_pred cCCcCEEEEEeCCCcEEEEEEeC
Confidence 44448999999999999999987
No 484
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=63.68 E-value=1.1e+02 Score=27.13 Aligned_cols=183 Identities=14% Similarity=0.125 Sum_probs=104.8
Q ss_pred CCCCeEEEEcCCCCCCCCCCeEEEEECCCCcE---EEEEecCCceEEEEEcCCeEEEEE-CCeEEEEECCCCce---eeE
Q 019349 56 YSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTA---LRELNFLTSILAVRLNKKRLVIVL-REKTYIYDANTLAI---LDT 128 (342)
Q Consensus 56 ~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~---~~~~~~~~~v~~i~~~~~~~~~~~-d~~i~i~d~~~~~~---~~~ 128 (342)
.+.++..++-. +.-++|.|+.+... +..+...+...++.++.+...++. ++-..++|+.+.+. ...
T Consensus 94 vse~yvyvad~-------ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vsGn~aYVadlddgfLivdvsdpssP~lagr 166 (370)
T COG5276 94 VSEEYVYVADW-------SSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVSGNYAYVADLDDGFLIVDVSDPSSPQLAGR 166 (370)
T ss_pred ecccEEEEEcC-------CCceEEEeccCCCCcceeccccCCceEEEEEecCCEEEEeeccCcEEEEECCCCCCceeeee
Confidence 34455555443 67789999876543 344444567788999999998888 88888899976532 222
Q ss_pred EeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCceeEEEecc--cC-CeeEEEECCCCCEEEEEeCCCcEEE
Q 019349 129 IDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDAH--QA-PLAAIVLSSNGMYIATASEQGTIIR 205 (342)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h--~~-~v~~i~~s~dg~~lat~s~dg~~ir 205 (342)
...... ...-++.+++..+.+. .++-+.|-|+.+...-. |.+| .+ .+.++..+++-.+++... .| + -
T Consensus 167 ya~~~~--d~~~v~ISGn~AYvA~----~d~GL~ivDVSnp~sPv-li~~~n~g~g~~sv~vsdnr~y~vvy~-eg-v-l 236 (370)
T COG5276 167 YALPGG--DTHDVAISGNYAYVAW----RDGGLTIVDVSNPHSPV-LIGSYNTGPGTYSVSVSDNRAYLVVYD-EG-V-L 236 (370)
T ss_pred eccCCC--CceeEEEecCeEEEEE----eCCCeEEEEccCCCCCe-EEEEEecCCceEEEEecCCeeEEEEcc-cc-e-E
Confidence 222111 1123344555555443 35669999987654322 2222 22 678888888766666554 34 3 3
Q ss_pred EEEcCCCeeEEEec--cCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCC
Q 019349 206 VFLVSEATKSYSFR--RGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAI 260 (342)
Q Consensus 206 lwd~~~~~~~~~~~--~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~ 260 (342)
+-|..+.+....+. ....+..+..+..+ ++ +.-.+..+.-+.+-|++.+.
T Consensus 237 ivd~s~~ssp~~~gsyet~~p~~~s~v~Vs--~~---~~Yvadga~gl~~idisnp~ 288 (370)
T COG5276 237 IVDVSGPSSPTVFGSYETSNPVSISTVPVS--GE---YAYVADGAKGLPIIDISNPP 288 (370)
T ss_pred EEecCCCCCceEeeccccCCcccccceecc--cc---eeeeeccccCceeEeccCCC
Confidence 67776655333331 11122223333443 33 55556666667777776554
No 485
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=63.37 E-value=1.5e+02 Score=28.84 Aligned_cols=114 Identities=7% Similarity=0.016 Sum_probs=59.2
Q ss_pred ceEEEEEcCC-------eEEEEECCeEEEEECCC-----CceeeEE--eCCC-CCceEEEEeeCCCccEEEEeCCCCccE
Q 019349 96 SILAVRLNKK-------RLVIVLREKTYIYDANT-----LAILDTI--DTVP-NLKGLCAFSPSLNACFLAVPASTTKGS 160 (342)
Q Consensus 96 ~v~~i~~~~~-------~~~~~~d~~i~i~d~~~-----~~~~~~~--~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~g~ 160 (342)
.|.++.|.|- .+++-..+.|-+|.+.. .+.+..- +... -+.---..-++|....|+.-.. .| .
T Consensus 58 hV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~-~d-v 135 (671)
T PF15390_consen 58 HVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTA-RD-V 135 (671)
T ss_pred eeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEec-Cc-e
Confidence 5788888653 23333367899999852 2222221 1100 0111112345666666665432 12 2
Q ss_pred EEEEEccCC--ceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCC
Q 019349 161 VLVYNVMEL--HSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEA 212 (342)
Q Consensus 161 i~iwd~~~~--~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~ 212 (342)
-.+++++.. ....-++ -.+-|.|.+|.+||+.|+.|-...=--.+||-...
T Consensus 136 SV~~sV~~d~srVkaDi~-~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qK 188 (671)
T PF15390_consen 136 SVLPSVHCDSSRVKADIK-TSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQK 188 (671)
T ss_pred eEeeeeeeCCceEEEecc-CCceEEEEEecCcCCEEEEEeCCeEEEEEecCchh
Confidence 233444322 2223343 35679999999999998877533211248886543
No 486
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=62.93 E-value=1.2e+02 Score=27.60 Aligned_cols=130 Identities=11% Similarity=0.087 Sum_probs=66.0
Q ss_pred eEEEEECCC--CcEE--EEEe-cCCceEEEEEcCCeEEEEECCeEEEE-ECCC-C----c--ee-eEEeCCC--CCceEE
Q 019349 76 RLCLFNTTT--GTAL--RELN-FLTSILAVRLNKKRLVIVLREKTYIY-DANT-L----A--IL-DTIDTVP--NLKGLC 139 (342)
Q Consensus 76 ~i~iwd~~~--~~~~--~~~~-~~~~v~~i~~~~~~~~~~~d~~i~i~-d~~~-~----~--~~-~~~~~~~--~~~~~~ 139 (342)
.|.+++..+ |+.- ..+. .-.....+++.++.++++....|..| +... + + .+ ..+.... ......
T Consensus 48 rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~GlyV~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~ 127 (367)
T TIGR02604 48 RILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGGVYVATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLN 127 (367)
T ss_pred EEEEEEcCCCCCCcceeEEeecCCCCccceeEecCCEEEeCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCccccccc
Confidence 676666543 3321 1221 12345788888888666665666655 4421 1 1 11 1122210 112244
Q ss_pred EEeeCCCccEEEEeCCC-----------------CccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCc
Q 019349 140 AFSPSLNACFLAVPAST-----------------TKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGT 202 (342)
Q Consensus 140 ~~~~~~~~~~l~~~~~~-----------------~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~ 202 (342)
.+...|++.+.++.+.. ..|.|.-+|...++....-.++ .....++|+++|+++++-..++.
T Consensus 128 ~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~-rnp~Gl~~d~~G~l~~tdn~~~~ 206 (367)
T TIGR02604 128 SLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGF-QNPYGHSVDSWGDVFFCDNDDPP 206 (367)
T ss_pred CceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCCCeEEEEecCc-CCCccceECCCCCEEEEccCCCc
Confidence 55666777665544421 0145666666554432222333 33568999999998887654443
Q ss_pred EEEE
Q 019349 203 IIRV 206 (342)
Q Consensus 203 ~irl 206 (342)
..++
T Consensus 207 ~~~i 210 (367)
T TIGR02604 207 LCRV 210 (367)
T ss_pred eeEE
Confidence 3333
No 487
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=61.98 E-value=1.7e+02 Score=28.93 Aligned_cols=201 Identities=11% Similarity=0.030 Sum_probs=103.2
Q ss_pred CeEEEEEcCCCCEEEEEcCC-c-----EEEEeCCCCcEEEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEEC
Q 019349 9 PVFFVSFNQDNSGFALSTKD-G-----FKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNT 82 (342)
Q Consensus 9 ~V~~l~fs~d~~~la~g~~~-g-----~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~ 82 (342)
.+-.++.|||+++||-+-+. | +++.|+.+++.+.....+......|..+++.+.......+. ...+|.-..+
T Consensus 130 ~Lg~~~~s~D~~~la~s~D~~G~e~y~lr~kdL~tg~~~~d~i~~~~~~~~Wa~d~~~lfYt~~d~~~--rp~kv~~h~~ 207 (682)
T COG1770 130 SLGAASISPDHNLLAYSVDVLGDEQYTLRFKDLATGEELPDEITNTSGSFAWAADGKTLFYTRLDENH--RPDKVWRHRL 207 (682)
T ss_pred eeeeeeeCCCCceEEEEEecccccEEEEEEEecccccccchhhcccccceEEecCCCeEEEEEEcCCC--CcceEEEEec
Confidence 46678899999999866432 2 58899999987665444445667788877777766543211 1222322223
Q ss_pred CC--CcEEEEEecCCceEEEEE----cCCeEEEEE----CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEE
Q 019349 83 TT--GTALRELNFLTSILAVRL----NKKRLVIVL----REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAV 152 (342)
Q Consensus 83 ~~--~~~~~~~~~~~~v~~i~~----~~~~~~~~~----d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 152 (342)
.+ .+...-++.+..-.-+.+ ++..+++.. ...+++.+..++.....+-......--..+...++ .+++.
T Consensus 208 gt~~~~d~lvyeE~d~~f~~~v~~s~s~~yi~i~~~~~~tsE~~ll~a~~p~~~p~vv~pr~~g~eY~~eh~~d-~f~i~ 286 (682)
T COG1770 208 GTPGSSDELVYEEKDDRFFLSVGRSRSEAYIVISLGSHITSEVRLLDADDPEAEPKVVLPRENGVEYSVEHGGD-RFYIL 286 (682)
T ss_pred CCCCCcceEEEEcCCCcEEEEeeeccCCceEEEEcCCCcceeEEEEecCCCCCceEEEEEcCCCcEEeeeecCc-EEEEE
Confidence 33 111112222222222222 334455444 34788888876644322211111111222333333 33333
Q ss_pred eCCCCcc-EEEEEEccC---CceeEEEecccCCeeEEEECCCCCEEEEEeCCCc--EEEEEEcCCCee
Q 019349 153 PASTTKG-SVLVYNVME---LHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGT--IIRVFLVSEATK 214 (342)
Q Consensus 153 ~~~~~~g-~i~iwd~~~---~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~--~irlwd~~~~~~ 214 (342)
.. .+| ..+|..... .+.-+.+-.|...+.--.|+--..+|+-.-.++- .|++++.++++.
T Consensus 287 sN--~~gknf~l~~ap~~~~~~~w~~~I~h~~~~~l~~~~~f~~~lVl~eR~~glp~v~v~~~~~~~~ 352 (682)
T COG1770 287 SN--ADGKNFKLVRAPVSADKSNWRELIPHREDVRLEGVDLFADHLVLLERQEGLPRVVVRDRKTGEE 352 (682)
T ss_pred ec--CCCcceEEEEccCCCChhcCeeeeccCCCceeeeeeeeccEEEEEecccCCceEEEEecCCCce
Confidence 33 233 455555432 1223445567776666666665666666554432 356788877654
No 488
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=61.78 E-value=1.5e+02 Score=28.12 Aligned_cols=52 Identities=13% Similarity=0.052 Sum_probs=32.1
Q ss_pred EEEEeeCCCccEEEEeCCCCccEEEEEEccCCce--eEEEe-----cccCCeeEEEECCCC
Q 019349 138 LCAFSPSLNACFLAVPASTTKGSVLVYNVMELHS--HCEID-----AHQAPLAAIVLSSNG 191 (342)
Q Consensus 138 ~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~--~~~~~-----~h~~~v~~i~~s~dg 191 (342)
-..+.+.|++.++++.- ..|.|++++..++.. +..+. .-......|+|+|+-
T Consensus 32 Pw~maflPDG~llVtER--~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 32 PWALLWGPDNQLWVTER--ATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred ceEEEEcCCCeEEEEEe--cCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 34556667777776642 258999998654432 22221 125678899999874
No 489
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=61.37 E-value=1.4e+02 Score=27.85 Aligned_cols=269 Identities=13% Similarity=0.183 Sum_probs=129.7
Q ss_pred CCCEEEEEcCCcE-EEEeCCCCc-----EEEEEee-CCEEEEEEc---CC--CCeEEEEcCCCCCCCCCCeEEEEECCC-
Q 019349 18 DNSGFALSTKDGF-KIFDSSTGR-----LCYERAV-GAFSIVEML---YS--SSLLAIVGAGEQPSLSPRRLCLFNTTT- 84 (342)
Q Consensus 18 d~~~la~g~~~g~-~v~d~~~~~-----~~~~~~~-~~~~~~~~~---~~--~~~~~~~~~g~~~~~~d~~i~iwd~~~- 84 (342)
+...+++|+-.|. |||++.... ++.+.+. .+|--++.- .. .+.+++. .++++.+|.+..
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVL--------hP~kl~vY~v~~~ 107 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVL--------HPRKLSVYSVSLV 107 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEe--------cCCEEEEEEEEec
Confidence 3357899998885 999985442 3444333 344433322 11 2345554 478999998732
Q ss_pred -Cc----------EEEEEecCCceEEEEE------c-CCeEEEEE-CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCC
Q 019349 85 -GT----------ALRELNFLTSILAVRL------N-KKRLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSL 145 (342)
Q Consensus 85 -~~----------~~~~~~~~~~v~~i~~------~-~~~~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (342)
|. .+.+..++.....++. . ++.+.+-+ ||.+.+|+-+.....+.+...--| +..++++..
T Consensus 108 ~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llP-gPl~Y~~~t 186 (418)
T PF14727_consen 108 DGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDFLLP-GPLCYCPRT 186 (418)
T ss_pred CCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCCCCC-cCeEEeecC
Confidence 11 1122233444444443 1 34444444 999999997665433444332222 334455544
Q ss_pred CccEEEEeCCCCccEEEEEEccC--------------------Ccee---EEEe--cccCCeeEEEECCCCCEEEEEeCC
Q 019349 146 NACFLAVPASTTKGSVLVYNVME--------------------LHSH---CEID--AHQAPLAAIVLSSNGMYIATASEQ 200 (342)
Q Consensus 146 ~~~~l~~~~~~~~g~i~iwd~~~--------------------~~~~---~~~~--~h~~~v~~i~~s~dg~~lat~s~d 200 (342)
| .+++++ .+..+.-|.... ++.+ -++. ...-.|..+.++..-..++.=++.
T Consensus 187 D--sfvt~s--ss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~~~~~~IvvLger 262 (418)
T PF14727_consen 187 D--SFVTAS--SSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFSSSESDIVVLGER 262 (418)
T ss_pred C--EEEEec--CceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEcCCCCceEEEEecc
Confidence 4 344444 235566665311 0100 0111 011123344444444445555544
Q ss_pred CcEEEEEEcCCCeeEEEeccCcCcee--EEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccc
Q 019349 201 GTIIRVFLVSEATKSYSFRRGTYPST--IFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPE 278 (342)
Q Consensus 201 g~~irlwd~~~~~~~~~~~~~~~~~~--v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 278 (342)
++ -+.+- +|+.....+-...+.. ++.+....+......++.++.++++.||.=.+
T Consensus 263 -~L-f~l~~-~G~l~~~krLd~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~-------------------- 319 (418)
T PF14727_consen 263 -SL-FCLKD-NGSLRFQKRLDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTT-------------------- 319 (418)
T ss_pred -eE-EEEcC-CCeEEEEEecCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCCe--------------------
Confidence 23 24443 5654433332211111 11121111211001599999999999996211
Q ss_pred cccccccccccc--eeeeccCCCccccEEEEEEeCCcEEEEEEecCCCC
Q 019349 279 SVNEVLDPADHH--VLRNAFPAGVKRASVSVITYNGYFVEYIFSINNCC 325 (342)
Q Consensus 279 ~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~dg~v~~~~~~~~~~~ 325 (342)
-.|+..-.. +......+..-...|++-+.||.+.+-=+-++...
T Consensus 320 ---L~WsA~l~~~PVal~v~~~~~~~G~IV~Ls~~G~L~v~YLGTdPs~ 365 (418)
T PF14727_consen 320 ---LVWSAQLPHVPVALSVANFNGLKGLIVSLSDEGQLSVSYLGTDPSL 365 (418)
T ss_pred ---EEEecCCCCCCEEEEecccCCCCceEEEEcCCCcEEEEEeCCCCcc
Confidence 133332211 11111222333578999999999998878766544
No 490
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=61.20 E-value=54 Score=22.93 Aligned_cols=49 Identities=22% Similarity=0.309 Sum_probs=30.9
Q ss_pred cEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcC
Q 019349 159 GSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVS 210 (342)
Q Consensus 159 g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~ 210 (342)
|.|.-||..+.+ ....--..-+.|.++|++++|..++.-+..|+++..+
T Consensus 36 ~~Vvyyd~~~~~---~va~g~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~ 84 (86)
T PF01731_consen 36 GNVVYYDGKEVK---VVASGFSFANGIAISPDKKYLYVASSLAHSIHVYKRH 84 (86)
T ss_pred ceEEEEeCCEeE---EeeccCCCCceEEEcCCCCEEEEEeccCCeEEEEEec
Confidence 446666644322 2111123357899999999998888665557788764
No 491
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=60.96 E-value=55 Score=34.22 Aligned_cols=95 Identities=12% Similarity=0.124 Sum_probs=59.6
Q ss_pred CccEEEEEEccCCcee-----EEEecc------cCCeeEEEECCCC-CEEEEEeCCCcEEEEEEcCCCee-EEEeccCcC
Q 019349 157 TKGSVLVYNVMELHSH-----CEIDAH------QAPLAAIVLSSNG-MYIATASEQGTIIRVFLVSEATK-SYSFRRGTY 223 (342)
Q Consensus 157 ~~g~i~iwd~~~~~~~-----~~~~~h------~~~v~~i~~s~dg-~~lat~s~dg~~irlwd~~~~~~-~~~~~~~~~ 223 (342)
.+-.|..||+++.... ..+.-| ..-..++.|+|.= ...|....|+. |++..+..-.. ...+. .
T Consensus 122 ng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dls-l~V~~~~~~~~~v~s~p---~ 197 (1405)
T KOG3630|consen 122 NGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLS-LRVKSTKQLAQNVTSFP---V 197 (1405)
T ss_pred CCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccc-hhhhhhhhhhhhhcccC---c
Confidence 3456888998755321 112222 2235677888753 23556667776 57777653322 12221 1
Q ss_pred ceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCC
Q 019349 224 PSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGF 258 (342)
Q Consensus 224 ~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~ 258 (342)
....++++|+|.|+ .++.|-..|++.-|...-
T Consensus 198 t~~~Tav~WSprGK---Ql~iG~nnGt~vQy~P~l 229 (1405)
T KOG3630|consen 198 TNSQTAVLWSPRGK---QLFIGRNNGTEVQYEPSL 229 (1405)
T ss_pred ccceeeEEeccccc---eeeEecCCCeEEEeeccc
Confidence 23489999999999 999999999998887543
No 492
>COG5308 NUP170 Nuclear pore complex subunit [Intracellular trafficking and secretion]
Probab=59.72 E-value=2.2e+02 Score=29.42 Aligned_cols=132 Identities=13% Similarity=0.205 Sum_probs=71.0
Q ss_pred CCCeEEEEECCCCcEEEEEe-cCCceEEEEE---cCC--------eEEEEECCeEEEEECC----CCceeeEEeCC----
Q 019349 73 SPRRLCLFNTTTGTALRELN-FLTSILAVRL---NKK--------RLVIVLREKTYIYDAN----TLAILDTIDTV---- 132 (342)
Q Consensus 73 ~d~~i~iwd~~~~~~~~~~~-~~~~v~~i~~---~~~--------~~~~~~d~~i~i~d~~----~~~~~~~~~~~---- 132 (342)
.|+++.+||..++..-+.+. +.+.|..+.+ .++ .+++++...+.++-+. +++ +.-+.++
T Consensus 100 ~dnkLiLWnynn~neyq~idd~shtIlkVkLvrPkantFvs~i~hlL~vAT~~e~~ilgvs~d~~T~E-ls~fnTgl~vs 178 (1263)
T COG5308 100 NDNKLILWNYNNSNEYQEIDDFSHTILKVKLVRPKANTFVSRISHLLFVATEKEVMILGVSKDTKTGE-LSLFNTGLVVS 178 (1263)
T ss_pred cCCEEEEEecCCCcchhhhhhhhhheeEEEEeccCCcccHHhhhhhhhhhhhheeeEEEEEeccccce-eEEEecceEEe
Confidence 37999999998766544432 2344555443 222 3445556666666543 221 1112221
Q ss_pred CCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccC--------Cce-------------e---EEEecccCCeeEEEEC
Q 019349 133 PNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVME--------LHS-------------H---CEIDAHQAPLAAIVLS 188 (342)
Q Consensus 133 ~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~--------~~~-------------~---~~~~~h~~~v~~i~~s 188 (342)
.....+.++....+|+.++.+. .+ +.+|.+.= .++ + ..+.-|...|..+++.
T Consensus 179 vqGinV~civs~e~GrIFf~g~---~d-~nvyEl~Y~~sd~wfnskcskiclTkS~l~sllPs~~~~~ipgetI~Ql~vD 254 (1263)
T COG5308 179 VQGINVRCIVSEEDGRIFFGGE---ND-PNVYELVYKSSDSWFNSKCSKICLTKSILSSLLPSFFSFGIPGETIKQLAVD 254 (1263)
T ss_pred ccCceeEEEEeccCCcEEEecC---CC-CCeEEEEEeccchhhhhhhhccCCcHHHHHhhcccccccCCcccchhheeec
Confidence 1112344444445676655443 23 78887630 010 0 1123467788888888
Q ss_pred CCCCEEEEEeCCCcEEEEEEcC
Q 019349 189 SNGMYIATASEQGTIIRVFLVS 210 (342)
Q Consensus 189 ~dg~~lat~s~dg~~irlwd~~ 210 (342)
.....|.+=+.... +|-+.+.
T Consensus 255 qsRg~ly~Lr~kS~-Vray~it 275 (1263)
T COG5308 255 QSRGLLYVLRKKSA-VRAYSIT 275 (1263)
T ss_pred ccccceeeecccce-eeeEeee
Confidence 77777777776654 5777664
No 493
>PRK13684 Ycf48-like protein; Provisional
Probab=59.20 E-value=1.4e+02 Score=26.93 Aligned_cols=106 Identities=14% Similarity=0.100 Sum_probs=58.1
Q ss_pred eEEEEeeCCCccEEEEeCCCCccEEEEEEccCCceeEEEe-cccCCeeEEEECCCCCEEEEEeCCCcEEEEE-EcCCCee
Q 019349 137 GLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEID-AHQAPLAAIVLSSNGMYIATASEQGTIIRVF-LVSEATK 214 (342)
Q Consensus 137 ~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~-~h~~~v~~i~~s~dg~~lat~s~dg~~irlw-d~~~~~~ 214 (342)
.+..+...+++.+++++. .|.+..-.-..++.-..+. .-...++++.+.++++.++.| ..|. + +. ....|+.
T Consensus 174 ~~~~i~~~~~g~~v~~g~---~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~-~-~~~s~d~G~s 247 (334)
T PRK13684 174 VVRNLRRSPDGKYVAVSS---RGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQ-I-RFNDPDDLES 247 (334)
T ss_pred eEEEEEECCCCeEEEEeC---CceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCE-E-EEccCCCCCc
Confidence 455666677776666554 4655432111222222222 234578999999999877765 4564 4 34 3444443
Q ss_pred EEEeccC--cCceeEEEEEEecCCCcccEEEEEeCCCcEE
Q 019349 215 SYSFRRG--TYPSTIFSLSFGQSMQFQDILVATSSSGSLH 252 (342)
Q Consensus 215 ~~~~~~~--~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~ 252 (342)
-.....+ .....+.+++|.|++. +.+++.+|.|.
T Consensus 248 W~~~~~~~~~~~~~l~~v~~~~~~~----~~~~G~~G~v~ 283 (334)
T PRK13684 248 WSKPIIPEITNGYGYLDLAYRTPGE----IWAGGGNGTLL 283 (334)
T ss_pred cccccCCccccccceeeEEEcCCCC----EEEEcCCCeEE
Confidence 2221111 0112478899999887 44556677664
No 494
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=56.86 E-value=68 Score=35.06 Aligned_cols=159 Identities=11% Similarity=0.099 Sum_probs=87.6
Q ss_pred EEeeCCCccEEEEeCCCCccEEEEEEccCCceeEEEe----cccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeE
Q 019349 140 AFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEID----AHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKS 215 (342)
Q Consensus 140 ~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~----~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~ 215 (342)
.+.-++++..+=. .++.++.||.... .++ .-..+++.+.-.-||+..| .++.. |-|+..+..-
T Consensus 367 gv~~~~~ge~lRl----Hd~~LY~~d~~~~----~Wk~~~~~~d~~~S~Ls~qgdG~lYA---k~~~~--l~nLSs~~~~ 433 (1774)
T PF11725_consen 367 GVHTDPDGEQLRL----HDDRLYQFDPNTA----RWKPPPDKSDTPFSSLSRQGDGKLYA---KDDDT--LVNLSSGQMS 433 (1774)
T ss_pred ccccCCCCCeEEe----ecCceeeeccccc----eecCCCCcccchhhhhcccCCCceEe---cCCCc--eeecCCCCcc
Confidence 3344444444432 3566777776543 233 2234667777777777666 34442 4566655432
Q ss_pred EEeccCcCceeEEEEEEecCCCcccE-EEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeee
Q 019349 216 YSFRRGTYPSTIFSLSFGQSMQFQDI-LVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRN 294 (342)
Q Consensus 216 ~~~~~~~~~~~v~~l~fs~d~~~~~~-l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (342)
..+ ...+.+...+++++ . +.++.+..++++|++....-...+... +.-.+.+ ...-..
T Consensus 434 ~~~-----v~~l~sfSv~~~g~---vA~L~~~d~q~~qL~~m~~~~a~~~p~~~---~~L~L~d----------G~a~A~ 492 (1774)
T PF11725_consen 434 EAE-----VDKLKSFSVAPDGT---VAMLTGKDGQTLQLHDMSPVDAPPTPRKT---KTLQLAD----------GKAQAQ 492 (1774)
T ss_pred hhh-----hhhcccccccCCCc---eeeeecCCCcceeeeccCccccccCccce---eeeeccC----------Cchhhh
Confidence 222 23467777789998 4 666666777899998765332211100 0001111 000011
Q ss_pred ccCCCccccEEEEEEeCCcEEEEEEecCCCCeeeeEEEee
Q 019349 295 AFPAGVKRASVSVITYNGYFVEYIFSINNCCESTWTLDRE 334 (342)
Q Consensus 295 ~~~~~~~~~~l~~~~~dg~v~~~~~~~~~~~~~~~~~~~~ 334 (342)
.| +-..++|+++..+|.+|.=++...+..+....++..
T Consensus 493 ~V--gLs~drLFvADseGkLYsa~l~~~~~~~~~l~~~p~ 530 (1774)
T PF11725_consen 493 SV--GLSNDRLFVADSEGKLYSADLPAAQDNEPKLKLMPE 530 (1774)
T ss_pred he--eecCCeEEEEeCCCCEEecccccccCCCcceEeccc
Confidence 12 223368999999999998888777766665555443
No 495
>PHA02790 Kelch-like protein; Provisional
Probab=56.07 E-value=1.9e+02 Score=27.57 Aligned_cols=185 Identities=8% Similarity=-0.068 Sum_probs=81.5
Q ss_pred CeEEEEcCCCCCCCCCCeEEEEECCCCcEEEEEecCC--ceEEEEEcCCeEEEEE--C--CeEEEEECCCCceeeEEeCC
Q 019349 59 SLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLT--SILAVRLNKKRLVIVL--R--EKTYIYDANTLAILDTIDTV 132 (342)
Q Consensus 59 ~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~~~~~~--~v~~i~~~~~~~~~~~--d--~~i~i~d~~~~~~~~~~~~~ 132 (342)
+.+.++||.... ...+++..||..+++....-..+. .-.++....+.+++++ + ..+..||..+.+-...-..+
T Consensus 272 ~~lyviGG~~~~-~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~ 350 (480)
T PHA02790 272 EVVYLIGGWMNN-EIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLL 350 (480)
T ss_pred CEEEEEcCCCCC-CcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCCCCceEEEECCCCeEEECCCCC
Confidence 455566553211 123567789988876543222221 1122233345555544 1 35778886543211100111
Q ss_pred CCCceEEEEeeCCCccEEEEeCCCC-ccEEEEEEccCCce--eEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEc
Q 019349 133 PNLKGLCAFSPSLNACFLAVPASTT-KGSVLVYNVMELHS--HCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLV 209 (342)
Q Consensus 133 ~~~~~~~~~~~~~~~~~l~~~~~~~-~g~i~iwd~~~~~~--~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~ 209 (342)
.......+... ++...+.+|.+. ...+..||..+.+= +..+.........++ -+|...+.|+ .. .++|.
T Consensus 351 ~~r~~~~~~~~--~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~--~~~~IYv~GG---~~-e~ydp 422 (480)
T PHA02790 351 KPRCNPAVASI--NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALV--FGRRLFLVGR---NA-EFYCE 422 (480)
T ss_pred CCCcccEEEEE--CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEE--ECCEEEEECC---ce-EEecC
Confidence 11112222222 244555565321 13577888766531 111111111111222 3566666664 33 57888
Q ss_pred CCCeeE--EEeccCcCceeEEEEEEecCCCcccEEEEEeCC-----CcEEEEecCCC
Q 019349 210 SEATKS--YSFRRGTYPSTIFSLSFGQSMQFQDILVATSSS-----GSLHVFSPGFA 259 (342)
Q Consensus 210 ~~~~~~--~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~d-----g~i~vwd~~~~ 259 (342)
.+.+-. ..+.. ..... +++. -+++ +.+.|+.+ .+|..||.+++
T Consensus 423 ~~~~W~~~~~m~~--~r~~~-~~~v-~~~~---IYviGG~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 423 SSNTWTLIDDPIY--PRDNP-ELII-VDNK---LLLIGGFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred CCCcEeEcCCCCC--Ccccc-EEEE-ECCE---EEEECCcCCCcccceEEEEECCCC
Confidence 766432 11111 11112 2232 3566 77777754 35777776543
No 496
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=56.02 E-value=2.4e+02 Score=28.86 Aligned_cols=29 Identities=7% Similarity=0.248 Sum_probs=23.8
Q ss_pred CceEEEEEcCCeEEEEE-CCeEEEEECCCC
Q 019349 95 TSILAVRLNKKRLVIVL-REKTYIYDANTL 123 (342)
Q Consensus 95 ~~v~~i~~~~~~~~~~~-d~~i~i~d~~~~ 123 (342)
..|.+|+.++++-++.+ ++.|+-|-++..
T Consensus 229 h~~~qisvs~~HslvLT~~g~Vys~GlN~~ 258 (1267)
T KOG0783|consen 229 HKVIQISVSHTHSLVLTKFGSVYSWGLNGS 258 (1267)
T ss_pred cceEEEEeecceeEEEeecceEEEeecCcc
Confidence 47888999988877766 899999998754
No 497
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=54.77 E-value=39 Score=19.27 Aligned_cols=23 Identities=22% Similarity=0.226 Sum_probs=14.7
Q ss_pred EEEcCCeEEEEE-CCeEEEEECCC
Q 019349 100 VRLNKKRLVIVL-REKTYIYDANT 122 (342)
Q Consensus 100 i~~~~~~~~~~~-d~~i~i~d~~~ 122 (342)
+....+.+++.+ ++.++.+|.++
T Consensus 17 ~~v~~g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 17 PAVAGGRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp -EECTSEEEEE-TTSEEEEEETT-
T ss_pred CEEECCEEEEEcCCCEEEEEeCCC
Confidence 456667777766 78888888653
No 498
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=54.10 E-value=39 Score=19.11 Aligned_cols=27 Identities=11% Similarity=0.287 Sum_probs=20.8
Q ss_pred EEEEeCCCcEEEEEEcCCCeeEEEeccC
Q 019349 194 IATASEQGTIIRVFLVSEATKSYSFRRG 221 (342)
Q Consensus 194 lat~s~dg~~irlwd~~~~~~~~~~~~~ 221 (342)
+..++.||.+ .-.|.++|+.+.+++.+
T Consensus 3 v~~~~~~g~l-~AlD~~TG~~~W~~~~~ 29 (38)
T PF01011_consen 3 VYVGTPDGYL-YALDAKTGKVLWKFQTG 29 (38)
T ss_dssp EEEETTTSEE-EEEETTTTSEEEEEESS
T ss_pred EEEeCCCCEE-EEEECCCCCEEEeeeCC
Confidence 4555888875 68999999998888654
No 499
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=51.64 E-value=2.4e+02 Score=27.46 Aligned_cols=36 Identities=25% Similarity=0.486 Sum_probs=29.4
Q ss_pred CCCCCeEEEEEcCCCCEEEEEcCCcEEEEeCCCCcEE
Q 019349 5 SSSYPVFFVSFNQDNSGFALSTKDGFKIFDSSTGRLC 41 (342)
Q Consensus 5 ~~~~~V~~l~fs~d~~~la~g~~~g~~v~d~~~~~~~ 41 (342)
..+.+|..+-|+..|. |-+|+++|+..||..+++..
T Consensus 162 l~d~~V~aLv~D~~g~-lWvgT~dGL~~fd~~~gkal 197 (671)
T COG3292 162 LKDTPVVALVFDANGR-LWVGTPDGLSYFDAGRGKAL 197 (671)
T ss_pred ccCccceeeeeeccCc-EEEecCCcceEEccccceEE
Confidence 3567899999999986 56799999999998877654
No 500
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=49.44 E-value=1.9e+02 Score=25.80 Aligned_cols=38 Identities=8% Similarity=-0.046 Sum_probs=30.8
Q ss_pred CCeEEEEECCCCcEEEEEecCCceEEEEEcCCeEEEEE
Q 019349 74 PRRLCLFNTTTGTALRELNFLTSILAVRLNKKRLVIVL 111 (342)
Q Consensus 74 d~~i~iwd~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~ 111 (342)
.+.+.-+|..+|+.......++...++.|.++.+++..
T Consensus 222 tGev~~vD~~~G~~e~Va~vpG~~rGL~f~G~llvVgm 259 (335)
T TIGR03032 222 RGELGYVDPQAGKFQPVAFLPGFTRGLAFAGDFAFVGL 259 (335)
T ss_pred CCEEEEEcCCCCcEEEEEECCCCCcccceeCCEEEEEe
Confidence 78999999988887777778888899999877666654
Done!