BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019351
(342 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P60028|GDIA_PANTR Rab GDP dissociation inhibitor alpha OS=Pan troglodytes GN=GDI1
PE=2 SV=1
Length = 447
Score = 449 bits (1156), Expect = e-125, Method: Compositional matrix adjust.
Identities = 213/334 (63%), Positives = 273/334 (81%), Gaps = 3/334 (0%)
Query: 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLN-LIQLWKRFRGNE 59
MDEEYDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGESSS+ L +L+KRF+ E
Sbjct: 1 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLE 60
Query: 60 QPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVP 119
PP +G RD+NVD+IPKF++ANG LV++L++T+VT+YL FK V+GSFVY GK++KVP
Sbjct: 61 GPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVP 120
Query: 120 ATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDN 179
+T+ EAL S LMG+FEKRR RKF ++V ++DENDPKT EG+D + R++ K+ L +
Sbjct: 121 STETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQTTSMRDVYRKFDLGQD 180
Query: 180 TIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFA 239
IDF GHALAL+R D YL++P L+TV R+KLY+ES+AR+ G SPY+YPLYGLGELPQ FA
Sbjct: 181 VIDFTGHALALYRTDDYLDQPCLETVNRIKLYSESLARY-GKSPYLYPLYGLGELPQGFA 239
Query: 240 RLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVA 299
RLSA+YGGTYMLNKP + E GKVVGV SEGE A+CK+++CDPSY+P++VRK G+V
Sbjct: 240 RLSAIYGGTYMLNKPVDDIIM-ENGKVVGVKSEGEVARCKQLICDPSYIPDRVRKAGQVI 298
Query: 300 RAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDI 333
R I I+SHPI NTND++S Q+I+PQ Q+ R+SDI
Sbjct: 299 RIICILSHPIKNTNDANSCQIIIPQNQVNRKSDI 332
>sp|P31150|GDIA_HUMAN Rab GDP dissociation inhibitor alpha OS=Homo sapiens GN=GDI1 PE=1
SV=2
Length = 447
Score = 449 bits (1156), Expect = e-125, Method: Compositional matrix adjust.
Identities = 213/334 (63%), Positives = 273/334 (81%), Gaps = 3/334 (0%)
Query: 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLN-LIQLWKRFRGNE 59
MDEEYDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGESSS+ L +L+KRF+ E
Sbjct: 1 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLE 60
Query: 60 QPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVP 119
PP +G RD+NVD+IPKF++ANG LV++L++T+VT+YL FK V+GSFVY GK++KVP
Sbjct: 61 GPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVP 120
Query: 120 ATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDN 179
+T+ EAL S LMG+FEKRR RKF ++V ++DENDPKT EG+D + R++ K+ L +
Sbjct: 121 STETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQTTSMRDVYRKFDLGQD 180
Query: 180 TIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFA 239
IDF GHALAL+R D YL++P L+TV R+KLY+ES+AR+ G SPY+YPLYGLGELPQ FA
Sbjct: 181 VIDFTGHALALYRTDDYLDQPCLETVNRIKLYSESLARY-GKSPYLYPLYGLGELPQGFA 239
Query: 240 RLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVA 299
RLSA+YGGTYMLNKP + E GKVVGV SEGE A+CK+++CDPSY+P++VRK G+V
Sbjct: 240 RLSAIYGGTYMLNKPVDDIIM-ENGKVVGVKSEGEVARCKQLICDPSYIPDRVRKAGQVI 298
Query: 300 RAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDI 333
R I I+SHPI NTND++S Q+I+PQ Q+ R+SDI
Sbjct: 299 RIICILSHPIKNTNDANSCQIIIPQNQVNRKSDI 332
>sp|P50398|GDIA_RAT Rab GDP dissociation inhibitor alpha OS=Rattus norvegicus GN=Gdi1
PE=1 SV=1
Length = 447
Score = 449 bits (1154), Expect = e-125, Method: Compositional matrix adjust.
Identities = 212/334 (63%), Positives = 273/334 (81%), Gaps = 3/334 (0%)
Query: 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLN-LIQLWKRFRGNE 59
MDEEYDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGESSS+ L +L+KRF+ E
Sbjct: 1 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLE 60
Query: 60 QPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVP 119
PP +G RD+NVD+IPKF++ANG LV++L++T+VT+YL FK V+GSFVY GK++KVP
Sbjct: 61 GPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVP 120
Query: 120 ATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDN 179
+T+ EAL S LMG+FEKRR RKF ++V ++DENDPKT EG+D + R++ K+ L +
Sbjct: 121 STETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQTTSMRDVYRKFDLGQD 180
Query: 180 TIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFA 239
IDF GHALAL+R D YL++P L+T+ R+KLY+ES+AR+ G SPY+YPLYGLGELPQ FA
Sbjct: 181 VIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFA 239
Query: 240 RLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVA 299
RLSA+YGGTYMLNKP + E GKVVGV SEGE A+CK+++CDPSY+P++VRK G+V
Sbjct: 240 RLSAIYGGTYMLNKPVDDIIM-ENGKVVGVKSEGEVARCKQLICDPSYIPDRVRKAGQVI 298
Query: 300 RAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDI 333
R I I+SHPI NTND++S Q+I+PQ Q+ R+SDI
Sbjct: 299 RIICILSHPIKNTNDANSCQIIIPQNQVNRKSDI 332
>sp|Q7YQM0|GDIA_PONPY Rab GDP dissociation inhibitor alpha OS=Pongo pygmaeus GN=GDI1 PE=2
SV=1
Length = 447
Score = 448 bits (1153), Expect = e-125, Method: Compositional matrix adjust.
Identities = 212/334 (63%), Positives = 273/334 (81%), Gaps = 3/334 (0%)
Query: 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLN-LIQLWKRFRGNE 59
MDEEYDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGESSS+ L +L+KRF+ E
Sbjct: 1 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLE 60
Query: 60 QPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVP 119
PP +G RD+NVD+IPKF++ANG LV++L++T+VT+YL FK V+GSFVY GK++KVP
Sbjct: 61 GPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVP 120
Query: 120 ATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDN 179
+T+ EAL S LMG+FEKRR RKF ++V ++DENDPKT EG+D + R++ K+ L +
Sbjct: 121 STETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQTTSMRDVYRKFDLGQD 180
Query: 180 TIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFA 239
IDF GHALAL+R D YL++P L+T+ R+KLY+ES+AR+ G SPY+YPLYGLGELPQ FA
Sbjct: 181 VIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFA 239
Query: 240 RLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVA 299
RLSA+YGGTYMLNKP + E GKVVGV SEGE A+CK+++CDPSY+P++VRK G+V
Sbjct: 240 RLSAIYGGTYMLNKPVDDIIM-ENGKVVGVKSEGEVARCKQLICDPSYIPDRVRKAGQVI 298
Query: 300 RAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDI 333
R I I+SHPI NTND++S Q+I+PQ Q+ R+SDI
Sbjct: 299 RIICILSHPIKNTNDANSCQIIIPQNQVNRKSDI 332
>sp|P21856|GDIA_BOVIN Rab GDP dissociation inhibitor alpha OS=Bos taurus GN=GDI1 PE=1
SV=1
Length = 447
Score = 448 bits (1153), Expect = e-125, Method: Compositional matrix adjust.
Identities = 212/334 (63%), Positives = 273/334 (81%), Gaps = 3/334 (0%)
Query: 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLN-LIQLWKRFRGNE 59
MDEEYDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGESSS+ L +L+KRF+ E
Sbjct: 1 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLE 60
Query: 60 QPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVP 119
PP +G RD+NVD+IPKF++ANG LV++L++T+VT+YL FK V+GSFVY GK++KVP
Sbjct: 61 GPPETMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVP 120
Query: 120 ATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDN 179
+T+ EAL S LMG+FEKRR RKF ++V ++DENDPKT EG+D + R++ K+ L +
Sbjct: 121 STETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQNTSMRDVYRKFDLGQD 180
Query: 180 TIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFA 239
IDF GHALAL+R D YL++P L+T+ R+KLY+ES+AR+ G SPY+YPLYGLGELPQ FA
Sbjct: 181 VIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFA 239
Query: 240 RLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVA 299
RLSA+YGGTYMLNKP + E GKVVGV SEGE A+CK+++CDPSY+P++VRK G+V
Sbjct: 240 RLSAIYGGTYMLNKPVDDIIM-ENGKVVGVKSEGEVARCKQLICDPSYVPDRVRKAGQVI 298
Query: 300 RAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDI 333
R I I+SHPI NTND++S Q+I+PQ Q+ R+SDI
Sbjct: 299 RIICILSHPIKNTNDANSCQIIIPQNQVNRKSDI 332
>sp|Q8HXX7|GDIA_MACFA Rab GDP dissociation inhibitor alpha OS=Macaca fascicularis GN=GDI1
PE=2 SV=1
Length = 447
Score = 448 bits (1153), Expect = e-125, Method: Compositional matrix adjust.
Identities = 212/334 (63%), Positives = 273/334 (81%), Gaps = 3/334 (0%)
Query: 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLN-LIQLWKRFRGNE 59
MDEEYDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGESSS+ L +L+KRF+ E
Sbjct: 1 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLE 60
Query: 60 QPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVP 119
PP +G RD+NVD+IPKF++ANG LV++L++T+VT+YL FK V+GSFVY GK++KVP
Sbjct: 61 GPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVP 120
Query: 120 ATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDN 179
+T+ EAL S LMG+FEKRR RKF ++V ++DENDPKT EG+D + R++ K+ L +
Sbjct: 121 STETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQTTSMRDVYRKFDLGQD 180
Query: 180 TIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFA 239
IDF GHALAL+R D YL++P L+T+ R+KLY+ES+AR+ G SPY+YPLYGLGELPQ FA
Sbjct: 181 VIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFA 239
Query: 240 RLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVA 299
RLSA+YGGTYMLNKP + E GKVVGV SEGE A+CK+++CDPSY+P++VRK G+V
Sbjct: 240 RLSAIYGGTYMLNKPVDDIIM-ENGKVVGVKSEGEVARCKQLICDPSYIPDRVRKAGQVI 298
Query: 300 RAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDI 333
R I I+SHPI NTND++S Q+I+PQ Q+ R+SDI
Sbjct: 299 RIICILSHPIKNTNDANSCQIIIPQNQVNRKSDI 332
>sp|O97555|GDIA_CANFA Rab GDP dissociation inhibitor alpha OS=Canis familiaris GN=GDI1
PE=2 SV=1
Length = 447
Score = 448 bits (1152), Expect = e-125, Method: Compositional matrix adjust.
Identities = 211/334 (63%), Positives = 273/334 (81%), Gaps = 3/334 (0%)
Query: 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLN-LIQLWKRFRGNE 59
MDEEYDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGESSS+ L +L+KRF+ E
Sbjct: 1 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLE 60
Query: 60 QPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVP 119
PP +G RD+NVD+IPKF++ANG LV++L++T+VT+YL FK V+GSF+Y GK++KVP
Sbjct: 61 GPPEAMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFIYKGGKIYKVP 120
Query: 120 ATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDN 179
+T+ EAL S LMG+FEKRR RKF ++V ++DENDPKT EG+D + R++ K+ L +
Sbjct: 121 STETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQSTSMRDVYRKFDLGQD 180
Query: 180 TIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFA 239
IDF GHALAL+R D YL++P L+T+ R+KLY+ES+AR+ G SPY+YPLYGLGELPQ FA
Sbjct: 181 VIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFA 239
Query: 240 RLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVA 299
RLSA+YGGTYMLNKP + E GKVVGV SEGE A+CK+++CDPSY+P++VRK G+V
Sbjct: 240 RLSAIYGGTYMLNKPVDDIIM-ENGKVVGVKSEGEVARCKQLICDPSYIPDRVRKAGQVI 298
Query: 300 RAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDI 333
R I I+SHPI NTND++S Q+I+PQ Q+ R+SDI
Sbjct: 299 RIICILSHPIKNTNDANSCQIIIPQNQVNRKSDI 332
>sp|P50396|GDIA_MOUSE Rab GDP dissociation inhibitor alpha OS=Mus musculus GN=Gdi1 PE=1
SV=3
Length = 447
Score = 447 bits (1150), Expect = e-125, Method: Compositional matrix adjust.
Identities = 211/334 (63%), Positives = 273/334 (81%), Gaps = 3/334 (0%)
Query: 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLN-LIQLWKRFRGNE 59
MDEEYDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGESSS+ L +L+KRF+ E
Sbjct: 1 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQILE 60
Query: 60 QPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVP 119
PP +G RD+NVD+IPKF++ANG LV++L++T+VT+YL FK V+GSFVY GK++KVP
Sbjct: 61 GPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVP 120
Query: 120 ATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDN 179
+T+ EAL S LMG+FEKRR RKF ++V ++DENDPKT EG+D + R++ K+ L +
Sbjct: 121 STETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQNTSMRDVYRKFDLGQD 180
Query: 180 TIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFA 239
IDF GHALAL+R D YL++P L+T+ R+KLY+ES+AR+ G SPY+YPLYGLGELPQ FA
Sbjct: 181 VIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFA 239
Query: 240 RLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVA 299
RLSA+YGGTYMLNKP + E GKVVGV SEGE A+CK+++CDPSY+P++V+K G+V
Sbjct: 240 RLSAIYGGTYMLNKPVDDIIM-ENGKVVGVKSEGEVARCKQLICDPSYIPDRVQKAGQVI 298
Query: 300 RAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDI 333
R I I+SHPI NTND++S Q+I+PQ Q+ R+SDI
Sbjct: 299 RIICILSHPIKNTNDANSCQIIIPQNQVNRKSDI 332
>sp|P50397|GDIB_BOVIN Rab GDP dissociation inhibitor beta OS=Bos taurus GN=GDI2 PE=2 SV=3
Length = 445
Score = 440 bits (1132), Expect = e-123, Method: Compositional matrix adjust.
Identities = 205/334 (61%), Positives = 271/334 (81%), Gaps = 3/334 (0%)
Query: 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQ-LWKRFRGNE 59
M+EEYDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGES+S+ ++ L+KRF+
Sbjct: 1 MNEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESASITPLEDLYKRFKIPG 60
Query: 60 QPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVP 119
PPA +G RD+NVD+IPKF++ANG LV++L+ T+VT+YL FK +GSFVY GK++KVP
Sbjct: 61 APPASMGRGRDWNVDLIPKFLMANGQLVKMLLFTEVTRYLDFKVTEGSFVYKGGKIYKVP 120
Query: 120 ATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDN 179
+T+ EAL S LMG+FEKRR RKF +YV ++DENDP+T EG+D + + RE+ K+ L +
Sbjct: 121 STEAEALASSLMGLFEKRRFRKFLVYVANFDENDPRTFEGIDPKKTSMREVYKKFDLGQD 180
Query: 180 TIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFA 239
IDF GHALAL+R D YL++P +T+ R+KLY+ES+AR+ G SPY+YPLYGLGELPQ FA
Sbjct: 181 VIDFTGHALALYRTDDYLDQPCCETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFA 239
Query: 240 RLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVA 299
RLSA+YGGTYMLNKP ++ + GKV+GV SEGE A+CK+++CDPSY+ ++V KVG+V
Sbjct: 240 RLSAIYGGTYMLNKPIEEI-IMQNGKVIGVKSEGEIARCKQLICDPSYVKDRVEKVGQVI 298
Query: 300 RAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDI 333
R I I+SHPI NTND++S Q+I+PQ Q+ R+SDI
Sbjct: 299 RVICILSHPIKNTNDANSCQIIIPQNQVNRKSDI 332
>sp|Q6Q7J2|GDIB_PIG Rab GDP dissociation inhibitor beta OS=Sus scrofa GN=GDI2 PE=2 SV=1
Length = 445
Score = 436 bits (1122), Expect = e-122, Method: Compositional matrix adjust.
Identities = 204/334 (61%), Positives = 269/334 (80%), Gaps = 3/334 (0%)
Query: 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQ-LWKRFRGNE 59
M+EEYDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGES+S+ ++ L+KRF
Sbjct: 1 MNEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESASITPLEDLYKRFNIPG 60
Query: 60 QPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVP 119
PPA +G RD+NVD+IPKF++ANG LV++L+ T+VT+YL FK +GSFVY GK++KVP
Sbjct: 61 APPASMGRGRDWNVDLIPKFLMANGQLVKMLLFTEVTRYLDFKVTEGSFVYKGGKIYKVP 120
Query: 120 ATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDN 179
+T+ EAL S LMG+FEKRR RKF +YV ++DENDP+T EG+D + RE+ K+ L +
Sbjct: 121 STEAEALASSLMGLFEKRRFRKFLVYVANFDENDPRTFEGVDPKKTAMREVYKKFDLGQD 180
Query: 180 TIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFA 239
IDF GHALAL+R D YL++P +T+ R+KLY+ES+AR+ G SPY+YPLYGLGELPQ FA
Sbjct: 181 VIDFTGHALALYRTDDYLDQPCCETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFA 239
Query: 240 RLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVA 299
RLSA+YGGTYMLNKP ++ + GKV+GV SEGE A+CK+++CDPSY+ ++V KVG+V
Sbjct: 240 RLSAIYGGTYMLNKPIEEI-IVQNGKVIGVKSEGEIARCKQLICDPSYVKDRVEKVGQVI 298
Query: 300 RAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDI 333
R I I+SHPI NT+D++S Q+I+PQ Q+ R+SDI
Sbjct: 299 RVICILSHPIKNTSDANSCQIIIPQNQVNRKSDI 332
>sp|P50395|GDIB_HUMAN Rab GDP dissociation inhibitor beta OS=Homo sapiens GN=GDI2 PE=1
SV=2
Length = 445
Score = 436 bits (1122), Expect = e-121, Method: Compositional matrix adjust.
Identities = 203/334 (60%), Positives = 270/334 (80%), Gaps = 3/334 (0%)
Query: 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQ-LWKRFRGNE 59
M+EEYDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGES+S+ ++ L+KRF+
Sbjct: 1 MNEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESASITPLEDLYKRFKIPG 60
Query: 60 QPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVP 119
PP +G RD+NVD+IPKF++ANG LV++L++T+VT+YL FK +GSFVY GK++KVP
Sbjct: 61 SPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVTEGSFVYKGGKIYKVP 120
Query: 120 ATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDN 179
+T+ EAL S LMG+FEKRR RKF +YV ++DE DP+T EG+D + T R++ K+ L +
Sbjct: 121 STEAEALASSLMGLFEKRRFRKFLVYVANFDEKDPRTFEGIDPKKTTMRDVYKKFDLGQD 180
Query: 180 TIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFA 239
IDF GHALAL+R D YL++P +T+ R+KLY+ES+AR+ G SPY+YPLYGLGELPQ FA
Sbjct: 181 VIDFTGHALALYRTDDYLDQPCYETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFA 239
Query: 240 RLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVA 299
RLSA+YGGTYMLNKP ++ + GKV+GV SEGE A+CK+++CDPSY+ ++V KVG+V
Sbjct: 240 RLSAIYGGTYMLNKPIEEI-IVQNGKVIGVKSEGEIARCKQLICDPSYVKDRVEKVGQVI 298
Query: 300 RAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDI 333
R I I+SHPI NTND++S Q+I+PQ Q+ R+SDI
Sbjct: 299 RVICILSHPIKNTNDANSCQIIIPQNQVNRKSDI 332
>sp|P50399|GDIB_RAT Rab GDP dissociation inhibitor beta OS=Rattus norvegicus GN=Gdi2
PE=1 SV=2
Length = 445
Score = 436 bits (1121), Expect = e-121, Method: Compositional matrix adjust.
Identities = 202/334 (60%), Positives = 272/334 (81%), Gaps = 3/334 (0%)
Query: 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQ-LWKRFRGNE 59
M+EEYDVIVLGTGL ECILSG++SV+G KVLHMD+N YYGGES+S+ ++ L+KRF+
Sbjct: 1 MNEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDQNPYYGGESASITPLEDLYKRFKLPG 60
Query: 60 QPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVP 119
QPPA +G RD+NVD+IPKF++ANG LV++L+ T+VT+Y+ FK ++GSFVY GK++KVP
Sbjct: 61 QPPASMGRGRDWNVDLIPKFLMANGQLVKMLLFTEVTRYMDFKVIEGSFVYKGGKIYKVP 120
Query: 120 ATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDN 179
+T+ EAL S LMG+FEKRR RKF +YV ++DE DP+T EG+D + + R++ K+ L +
Sbjct: 121 STEAEALASSLMGLFEKRRFRKFLVYVANFDEKDPRTFEGVDPKKTSMRDVYKKFDLGQD 180
Query: 180 TIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFA 239
IDF GH+LAL+R D YL++P +T+ R+KLY+ES+AR+ G SPY+YPLYGLGELPQ FA
Sbjct: 181 VIDFTGHSLALYRTDDYLDQPCCETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFA 239
Query: 240 RLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVA 299
RLSA+YGGTYMLNKP ++ + GKVVGV SEGE A+CK+++CDPSY+ ++V KVG+V
Sbjct: 240 RLSAIYGGTYMLNKPIEEI-IVQNGKVVGVKSEGEIARCKQLICDPSYVKDRVEKVGQVI 298
Query: 300 RAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDI 333
R I I+SHPI NTND++S Q+I+PQ Q+ R+SDI
Sbjct: 299 RVICILSHPIKNTNDANSCQIIIPQNQVNRKSDI 332
>sp|Q61598|GDIB_MOUSE Rab GDP dissociation inhibitor beta OS=Mus musculus GN=Gdi2 PE=1
SV=1
Length = 445
Score = 436 bits (1121), Expect = e-121, Method: Compositional matrix adjust.
Identities = 202/334 (60%), Positives = 272/334 (81%), Gaps = 3/334 (0%)
Query: 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQ-LWKRFRGNE 59
M+EEYDVIVLGTGL ECILSG++SV+G KVLHMD+N YYGGES+S+ ++ L+KRF+
Sbjct: 1 MNEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDQNPYYGGESASITPLEDLYKRFKLPG 60
Query: 60 QPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVP 119
QPPA +G RD+NVD+IPKF++ANG LV++L+ T+VT+Y+ FK ++GSFVY GK++KVP
Sbjct: 61 QPPASMGRGRDWNVDLIPKFLMANGQLVKMLLFTEVTRYMDFKVIEGSFVYKGGKIYKVP 120
Query: 120 ATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDN 179
+T+ EAL S LMG+FEKRR RKF +YV ++DE DP+T EG+D + + R++ K+ L +
Sbjct: 121 STEAEALASSLMGLFEKRRFRKFLVYVANFDEKDPRTFEGVDPKKTSMRDVYKKFDLGQD 180
Query: 180 TIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFA 239
IDF GH+LAL+R D YL++P +T+ R+KLY+ES+AR+ G SPY+YPLYGLGELPQ FA
Sbjct: 181 VIDFTGHSLALYRTDDYLDQPCCETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFA 239
Query: 240 RLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVA 299
RLSA+YGGTYMLNKP ++ + GKVVGV SEGE A+CK+++CDPSY+ ++V KVG+V
Sbjct: 240 RLSAIYGGTYMLNKPIEEI-IVQNGKVVGVKSEGEIARCKQLICDPSYVKDRVEKVGQVI 298
Query: 300 RAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDI 333
R I I+SHPI NTND++S Q+I+PQ Q+ R+SDI
Sbjct: 299 RVICILSHPIKNTNDANSCQIIIPQNQVNRKSDI 332
>sp|Q5RCE1|GDIB_PONAB Rab GDP dissociation inhibitor beta OS=Pongo abelii GN=GDI2 PE=2
SV=1
Length = 445
Score = 435 bits (1118), Expect = e-121, Method: Compositional matrix adjust.
Identities = 202/334 (60%), Positives = 270/334 (80%), Gaps = 3/334 (0%)
Query: 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQ-LWKRFRGNE 59
M+EEYDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGES+S+ ++ L+KR++
Sbjct: 1 MNEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESASITPLEDLYKRYKIPG 60
Query: 60 QPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVP 119
PP +G RD+NVD+IPKF++ANG LV++L++T+VT+YL FK +GSFVY GK++KVP
Sbjct: 61 SPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVTEGSFVYKGGKIYKVP 120
Query: 120 ATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDN 179
+T+ EAL S LMG+FEKRR RKF +YV ++DE DP+T EG+D + T R++ K+ L +
Sbjct: 121 STEAEALASSLMGLFEKRRFRKFLVYVANFDEKDPRTFEGIDPKKTTMRDVYKKFDLGQD 180
Query: 180 TIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFA 239
IDF GHALAL+R D YL++P +T+ R+KLY+ES+AR+ G SPY+YPLYGLGELPQ FA
Sbjct: 181 VIDFTGHALALYRTDDYLDQPCYETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFA 239
Query: 240 RLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVA 299
RLSA+YGGTYMLNKP ++ + GKV+GV SEGE A+CK+++CDPSY+ ++V KVG+V
Sbjct: 240 RLSAIYGGTYMLNKPIEEI-IVQNGKVIGVKSEGEIARCKQLICDPSYVKDRVEKVGQVI 298
Query: 300 RAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDI 333
R I I+SHPI NTND++S Q+I+PQ Q+ R+SDI
Sbjct: 299 RVICILSHPIKNTNDANSCQIIIPQNQVNRKSDI 332
>sp|O97556|GDIB_CANFA Rab GDP dissociation inhibitor beta OS=Canis familiaris GN=GDI2
PE=2 SV=1
Length = 445
Score = 433 bits (1113), Expect = e-120, Method: Compositional matrix adjust.
Identities = 201/334 (60%), Positives = 269/334 (80%), Gaps = 3/334 (0%)
Query: 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQ-LWKRFRGNE 59
M+EEYDVIVLGTGL ECILSG+++V+G KVLHMDRN YYGGES+S+ ++ L+KRF+
Sbjct: 1 MNEEYDVIVLGTGLTECILSGIMTVNGKKVLHMDRNPYYGGESASITPLEDLYKRFKIPG 60
Query: 60 QPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVP 119
PPA +G RD+N+D+IPKF++ANG LV++L++T+VT+YL FK +GSFVY GK++KVP
Sbjct: 61 APPASMGRGRDWNLDLIPKFLMANGQLVKMLLYTEVTRYLDFKVTEGSFVYKGGKIYKVP 120
Query: 120 ATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDN 179
+T+ EAL S LMG+FEKRR RKF +YV ++DE DP+T EG+D + E+ K+ L +
Sbjct: 121 STEAEALASSLMGLFEKRRFRKFLVYVANFDEKDPRTFEGIDPKKTAIGEVYKKFDLGQD 180
Query: 180 TIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFA 239
IDF GHALAL+R D YL++P +T+ R+KLY+ES+AR+ G SPY+YPLYGLGELPQ FA
Sbjct: 181 VIDFTGHALALYRTDDYLDQPCCETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFA 239
Query: 240 RLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVA 299
RLSA+YGGTYMLNKP ++ + GKV+GV SEGE A+CK+++CDPSY+ ++V KVG+V
Sbjct: 240 RLSAIYGGTYMLNKPIEEI-IVQNGKVIGVKSEGEVARCKQLICDPSYVKDRVEKVGQVI 298
Query: 300 RAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDI 333
R I I+SHPI NTND++S Q+I+PQ Q+ R+SDI
Sbjct: 299 RVICILSHPIKNTNDANSCQIIIPQNQVNRKSDI 332
>sp|Q10305|GDI1_SCHPO Probable secretory pathway GDP dissociation inhibitor 1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=gdi1 PE=3 SV=1
Length = 440
Score = 417 bits (1073), Expect = e-116, Method: Compositional matrix adjust.
Identities = 197/333 (59%), Positives = 257/333 (77%), Gaps = 1/333 (0%)
Query: 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQ 60
MDEEYDVIVLGTGL EC+LSGLLSVDG KVLH+DRNDYYG +S+SLNL QL+ FR EQ
Sbjct: 1 MDEEYDVIVLGTGLTECVLSGLLSVDGKKVLHIDRNDYYGADSASLNLTQLYALFRPGEQ 60
Query: 61 PPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPA 120
P LG RD+ VD++PKF++ANG L +LI+TDVT+Y+ FK + GS+VY G++ KVP
Sbjct: 61 RPESLGRDRDWCVDLVPKFLMANGDLTNILIYTDVTRYIEFKQIAGSYVYRDGRIAKVPG 120
Query: 121 TDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNT 180
+MEALKSPLM +FEKRRA+KF +V +Y E+DP T++ +++ R + + K+GL T
Sbjct: 121 NEMEALKSPLMSLFEKRRAKKFLEWVNNYREDDPSTYKDINIDRDSMESVFKKFGLQSGT 180
Query: 181 IDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFAR 240
DFIGHA+AL+ DD YL +PA +T +R+ LYA SIA+F G SPYIYPLYGLGELPQ FAR
Sbjct: 181 QDFIGHAMALYLDDAYLKKPARETRERILLYASSIAKF-GKSPYIYPLYGLGELPQGFAR 239
Query: 241 LSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVAR 300
LSA+YGGTYMLN+P ++ + ++G +GV S + AK K+++ DPSY KVR VGR+ R
Sbjct: 240 LSAIYGGTYMLNQPVDEIVYGDDGVAIGVRSGDQVAKAKQIIGDPSYFREKVRSVGRLVR 299
Query: 301 AIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDI 333
AI I++HPIPNT++ SVQ+I+PQ Q+ R+ DI
Sbjct: 300 AICILNHPIPNTDNLDSVQIIIPQNQVKRKHDI 332
>sp|P39958|GDI1_YEAST Rab GDP-dissociation inhibitor OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=GDI1 PE=1 SV=1
Length = 451
Score = 389 bits (1000), Expect = e-107, Method: Compositional matrix adjust.
Identities = 185/339 (54%), Positives = 259/339 (76%), Gaps = 7/339 (2%)
Query: 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGN-- 58
+D +YDVIVLGTG+ ECILSGLLSVDG KVLH+D+ D+YGGE++S+ L QL+++F+ N
Sbjct: 6 IDTDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAASVTLSQLYEKFKQNPI 65
Query: 59 --EQPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVH 116
E+ + G RD+NVD+IPKF++ANG L +LIHTDVT+Y+ FK V GS+V+ +GK++
Sbjct: 66 SKEERESKFGKDRDWNVDLIPKFLMANGELTNILIHTDVTRYVDFKQVSGSYVFKQGKIY 125
Query: 117 KVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGL 176
KVPA ++EA+ SPLMGIFEKRR +KF ++ Y E+D TH+G+DL + T E+ K+GL
Sbjct: 126 KVPANEIEAISSPLMGIFEKRRMKKFLEWISSYKEDDLSTHQGLDLDKNTMDEVYYKFGL 185
Query: 177 DDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQ 236
++T +FIGHA+AL +D YL +PA + +R+ LY +S+AR+ G SPY+YP+YGLGELPQ
Sbjct: 186 GNSTKEFIGHAMALWTNDDYLQQPARPSFERILLYCQSVARY-GKSPYLYPMYGLGELPQ 244
Query: 237 AFARLSAVYGGTYMLNKPECKVEFDEE-GKVVGVTSEGETAKCKKVVCDPSYLPNKVRKV 295
FARLSA+YGGTYML+ P +V + ++ GK GV ++ T K V+ DP+Y P K +
Sbjct: 245 GFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKTKLGTFKAPLVIADPTYFPEKCKST 304
Query: 296 G-RVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDI 333
G RV RAI I++HP+PNT+++ S+Q+I+PQ QLGR+SDI
Sbjct: 305 GQRVIRAICILNHPVPNTSNADSLQIIIPQSQLGRKSDI 343
>sp|Q9V8W3|RABEP_DROME Rab proteins geranylgeranyltransferase component A OS=Drosophila
melanogaster GN=Rep PE=2 SV=1
Length = 511
Score = 152 bits (383), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 94/340 (27%), Positives = 160/340 (47%), Gaps = 35/340 (10%)
Query: 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQ 60
+ E++D++V+GTG E ++ S G VLH+D N+YYG SS ++ L R +
Sbjct: 5 LPEQFDLVVIGTGFTESCIAAAGSRIGKSVLHLDSNEYYGDVWSSFSMDALCARLDQEVE 64
Query: 61 PPAHL---------------------------GSSRDYNVDMIPKFIIANGALVRVLIHT 93
P + L SR +++D+ P+ + A G LV++LI +
Sbjct: 65 PHSALRNARYTWHSMEKESETDAQSWNRDSVLAKSRRFSLDLCPRILYAAGELVQLLIKS 124
Query: 94 DVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDEND 153
++ +Y F+AVD + + G++ VP + + + + I EKR KF DY E D
Sbjct: 125 NICRYAEFRAVDHVCMRHNGEIVSVPCSRSDVFNTKTLTIVEKRLLMKFLTACNDYGE-D 183
Query: 154 PKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAE 213
+ ++ T E + + + + A+A+ E ++R + +
Sbjct: 184 KCNEDSLEFRGRTFLEYLQAQRVTEKISSCVMQAIAMCGPSTSFEE----GMQRTQRFLG 239
Query: 214 SIARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEG 273
S+ R+ G +P+++P+YG GELPQ F RL AVYGG Y L + + D ++S G
Sbjct: 240 SLGRY-GNTPFLFPMYGCGELPQCFCRLCAVYGGIYCLKRAVDDIALDSNSNEFLLSSAG 298
Query: 274 ETAKCKKVVCDPSYLP--NKVRKVGRVARAIAIMSHPIPN 311
+T + K VV P Y P + ++R + I S P+ N
Sbjct: 299 KTLRAKNVVSAPGYTPVSKGIELKPHISRGLFISSSPLGN 338
>sp|Q9QZD5|RAE2_MOUSE Rab proteins geranylgeranyltransferase component A 2 OS=Mus
musculus GN=Chml PE=2 SV=2
Length = 621
Score = 131 bits (330), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 74/260 (28%), Positives = 137/260 (52%), Gaps = 12/260 (4%)
Query: 68 SRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALK 127
SR +N+D++ K + + G+L+ +LI ++V++Y FK V + +GKV +VP + +
Sbjct: 225 SRRFNIDLVSKPLYSQGSLIDLLIKSNVSRYAEFKNVTRILAFWEGKVEQVPCSRADVFN 284
Query: 128 SPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHA 187
S + + EKR KF + DY+++ + E D + + + + L N FI H+
Sbjct: 285 SKELSMVEKRMLMKFLTFCLDYEQH---SDEYQDFKQCSFSDYLKTKKLTPNLQHFILHS 341
Query: 188 LALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFARLSAVYGG 247
+A+ + LD ++ K + + + RF G +P+I+PLYG GE+PQ F R+ AV+GG
Sbjct: 342 IAMTSESSCTT---LDGLQATKNFLQCLGRF-GNTPFIFPLYGHGEIPQCFCRMCAVFGG 397
Query: 248 TYML-NKPECKVEFDEEGKVVGVTSE-GETAKCKKVVCDPSYLPNKVR---KVGRVARAI 302
Y L +K +C V + G+ G+ G+ + + SYLP + + +++RA+
Sbjct: 398 VYCLRHKVQCLVVDKDSGRCKGIIDAFGQRISANYFIVEDSYLPKETCSNVQYKQISRAV 457
Query: 303 AIMSHPIPNTNDSHSVQVIL 322
I I T+ + +++
Sbjct: 458 LITDQSILKTDSDQQISILV 477
Score = 52.0 bits (123), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 33/51 (64%), Gaps = 2/51 (3%)
Query: 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNL--IQLW 52
E+DV+++GTGL E IL+ S G +VLH+D YYGG +S + +Q W
Sbjct: 8 EFDVVIIGTGLPESILAAACSRSGQRVLHVDSRSYYGGNWASFSFTGLQSW 58
>sp|P26374|RAE2_HUMAN Rab proteins geranylgeranyltransferase component A 2 OS=Homo
sapiens GN=CHML PE=1 SV=2
Length = 656
Score = 124 bits (310), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 74/266 (27%), Positives = 138/266 (51%), Gaps = 13/266 (4%)
Query: 69 RDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKS 128
R +N+D++ K + + G L+ +LI +DV++Y+ FK V + +GKV +VP + + S
Sbjct: 227 RRFNIDLVSKLLYSQGLLIDLLIKSDVSRYVEFKNVTRILAFREGKVEQVPCSRADVFNS 286
Query: 129 PLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHAL 188
+ + EKR KF + +Y+++ P ++ + + E + L N F+ H++
Sbjct: 287 KELTMVEKRMLMKFLTFCLEYEQH-PDEYQA--FRQCSFSEYLKTKKLTPNLQHFVLHSI 343
Query: 189 ALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFARLSAVYGGT 248
A+ + +D + K + + + RF G +P+++PLYG GE+PQ F R+ AV+GG
Sbjct: 344 AMTSESSCT---TIDGLNATKNFLQCLGRF-GNTPFLFPLYGQGEIPQGFCRMCAVFGGI 399
Query: 249 YML-NKPECKVEFDEEGKVVGVTSE-GETAKCKKVVCDPSYLPNKVR---KVGRVARAIA 303
Y L +K +C V E G+ + G+ K + + SYL + + +++RA+
Sbjct: 400 YCLRHKVQCFVVDKESGRCKAIIDHFGQRINAKYFIVEDSYLSEETCSNVQYKQISRAVL 459
Query: 304 IMSHPIPNTN-DSHSVQVILPQKQLG 328
I I T+ D + +I+P + G
Sbjct: 460 ITDQSILKTDLDQQTSILIVPPAEPG 485
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLN---LIQLWKRFRGN 58
E+DV+++GTGL E IL+ S G +VLH+D YYGG +S + L+ K ++ N
Sbjct: 8 EFDVVIIGTGLPESILAAACSRSGQRVLHIDSRSYYGGNWASFSFSGLLSWLKEYQQN 65
>sp|P37727|RAE1_RAT Rab proteins geranylgeranyltransferase component A 1 OS=Rattus
norvegicus GN=Chm PE=1 SV=1
Length = 650
Score = 115 bits (289), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 74/268 (27%), Positives = 138/268 (51%), Gaps = 17/268 (6%)
Query: 69 RDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKS 128
R +N+D++ + + + G L+ +LI ++V++Y FK + + +G V +VP + + S
Sbjct: 222 RRFNIDLVSQLLYSRGLLIDLLIKSNVSRYAEFKNITRILAFREGTVEQVPCSRADVFNS 281
Query: 129 PLMGIFEKRRARKFFIYVQDYDE--NDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGH 186
+ + EKR KF + +Y+E ++ + +EG T E + L N F+ H
Sbjct: 282 KQLTMVEKRMLMKFLTFCVEYEEHPDEYRAYEG-----TTFSEYLKTQKLTPNLQYFVLH 336
Query: 187 ALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFARLSAVYG 246
++A+ + +D +K K + + + R+ G +P+++PLYG GELPQ F R+ AV+G
Sbjct: 337 SIAMTSETTSC---TVDGLKATKKFLQCLGRY-GNTPFLFPLYGQGELPQCFCRMCAVFG 392
Query: 247 GTYML-NKPECKVEFDEEGKVVGVTSE-GETAKCKKVVCDPSYLP-NKVRKVG--RVARA 301
G Y L + +C V E K V + G+ K + + SYL N +V +++RA
Sbjct: 393 GIYCLRHSVQCLVVDKESRKCKAVIDQFGQRIISKHFIIEDSYLSENTCSRVQYRQISRA 452
Query: 302 IAIMSHPIPNTNDSHSVQVI-LPQKQLG 328
+ I + T+ V ++ +P ++ G
Sbjct: 453 VLITDGSVLKTDADQQVSILAVPAEEPG 480
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLN---LIQLWKRFRGN 58
++DVIV+GTGL E I++ S G +VLH+D YYGG +S + L+ K ++ N
Sbjct: 8 DFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYGGNWASFSFSGLLSWLKEYQEN 65
>sp|P24386|RAE1_HUMAN Rab proteins geranylgeranyltransferase component A 1 OS=Homo
sapiens GN=CHM PE=1 SV=3
Length = 653
Score = 115 bits (289), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 71/266 (26%), Positives = 136/266 (51%), Gaps = 13/266 (4%)
Query: 69 RDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKS 128
R +N+D++ K + + G L+ +LI ++V++Y FK + + +G+V +VP + + S
Sbjct: 225 RRFNIDLVSKLLYSRGLLIDLLIKSNVSRYAEFKNITRILAFREGRVEQVPCSRADVFNS 284
Query: 129 PLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHAL 188
+ + EKR KF + +Y E P ++G + +T E + L N + H++
Sbjct: 285 KQLTMVEKRMLMKFLTFCMEY-EKYPDEYKGYE--EITFYEYLKTQKLTPNLQYIVMHSI 341
Query: 189 ALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFARLSAVYGGT 248
A+ + +D +K K + + R+ G +P+++PLYG GELPQ F R+ AV+GG
Sbjct: 342 AMTSETA---SSTIDGLKATKNFLHCLGRY-GNTPFLFPLYGQGELPQCFCRMCAVFGGI 397
Query: 249 YML-NKPECKVEFDEEGKVVGVTSE-GETAKCKKVVCDPSYLP-NKVRKVG--RVARAIA 303
Y L + +C V E K + + G+ + + + SY P N +V +++RA+
Sbjct: 398 YCLRHSVQCLVVDKESRKCKAIIDQFGQRIISEHFLVEDSYFPENMCSRVQYRQISRAVL 457
Query: 304 IMSHPIPNTNDSHSVQVI-LPQKQLG 328
I + T+ + ++ +P ++ G
Sbjct: 458 ITDRSVLKTDSDQQISILTVPAEEPG 483
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLN---LIQLWKRFRGN 58
E+DVIV+GTGL E I++ S G +VLH+D YYGG +S + L+ K ++ N
Sbjct: 8 EFDVIVIGTGLPESIIAAACSRSGRRVLHVDSRSYYGGNWASFSFSGLLSWLKEYQEN 65
>sp|Q9QXG2|RAE1_MOUSE Rab proteins geranylgeranyltransferase component A 1 OS=Mus
musculus GN=Chm PE=2 SV=1
Length = 665
Score = 115 bits (287), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 74/266 (27%), Positives = 135/266 (50%), Gaps = 13/266 (4%)
Query: 69 RDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKS 128
R +N+D++ K + + G L+ +LI ++V++Y FK + + +G V +VP + + S
Sbjct: 237 RRFNIDLVSKLLYSRGLLIDLLIKSNVSRYAEFKNITRILAFREGTVEQVPCSRADVFNS 296
Query: 129 PLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHAL 188
+ + EKR KF + +Y E+ P ++ + T T E + L N F+ H++
Sbjct: 297 KQLTMVEKRMLMKFLTFCVEY-EDHPDEYKAYEET--TFSEYLKTQKLTPNLQYFVLHSI 353
Query: 189 ALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFARLSAVYGGT 248
A+ + +D +K K + + + R+ G +P+++PLYG GELPQ F R+ AV+GG
Sbjct: 354 AMTSE---TTSSTVDGLKATKKFLQCLGRY-GNTPFLFPLYGQGELPQCFCRMCAVFGGI 409
Query: 249 YML-NKPECKVEFDEEGKVVGVTSE-GETAKCKKVVCDPSYLP-NKVRKVG--RVARAIA 303
Y L + +C V E K + + G+ K V + SYL N V +++RA+
Sbjct: 410 YCLRHSVQCLVVDKESRKCKAIVDQFGQRIISKHFVIEDSYLSENTCSGVQYRQISRAVL 469
Query: 304 IMSHPIPNTNDSHSVQVI-LPQKQLG 328
I + + V ++ +P ++ G
Sbjct: 470 ITDGSVLKPDSDQQVSILTVPAEESG 495
Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 61/140 (43%), Gaps = 37/140 (26%)
Query: 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLN---LIQLWKRFRGN-- 58
++DVIV+GTGL E I++ S G +VLH+D YYGG +S + L+ K ++ N
Sbjct: 8 DFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYGGNWASFSFSGLLSWLKEYQENSD 67
Query: 59 -------------EQPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVD 105
E A L SS+D + + F A+ L H DV +
Sbjct: 68 VVTENSMWQEQILENEEAILLSSKDKTIQHVEVFCYASQDL-----HKDVEE-------- 114
Query: 106 GSFVYNKGKVHKVPATDMEA 125
G + K PA+ M A
Sbjct: 115 ------AGALQKNPASVMSA 128
>sp|P32864|RAEP_YEAST Rab proteins geranylgeranyltransferase component A OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=MRS6 PE=1
SV=2
Length = 603
Score = 108 bits (270), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 95/344 (27%), Positives = 155/344 (45%), Gaps = 36/344 (10%)
Query: 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHL 65
DV++ GTG+ E +L+ L+ G VLH+D+NDYYG S++L + Q+ KR+ NE +
Sbjct: 48 DVLIAGTGMVESVLAAALAWQGSNVLHIDKNDYYGDTSATLTVDQI-KRWV-NEVNEGSV 105
Query: 66 G------------------SSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGS 107
SSRD+ +D+ PK + A L+ +LI + V +YL F+++
Sbjct: 106 SCYKNAKLYVSTLIGSGKYSSRDFGIDLSPKILFAKSDLLSILIKSRVHQYLEFQSLSNF 165
Query: 108 FVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTT 167
Y K+ T E + + KR KF +V +++ + R +
Sbjct: 166 HTYENDCFEKLTNTKQEIFTDQNLPLMTKRNLMKFIKFVLNWEAQTEIWQPYAE--RTMS 223
Query: 168 RELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYP 227
L K+ L+ + + ++ L D LN + ++R++ Y S + G P +
Sbjct: 224 DFLGEKFKLEKPQVFELIFSIGLCYD---LNVKVPEALQRIRRYLTSFDVY-GPFPALCS 279
Query: 228 LY-GLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPS 286
Y G GEL Q F R +AV G TY LN E V F+ KV + +KV+ P+
Sbjct: 280 KYGGPGELSQGFCRSAAVGGATYKLN--EKLVSFNPTTKVATFQDGSKVEVSEKVIISPT 337
Query: 287 YLPNKVRKVG----RVARAIAIMSHPIP---NTNDSHSVQVILP 323
P + V +V R I+ +P N +S ++ V P
Sbjct: 338 QAPKDSKHVPQQQYQVHRLTCIVENPCTEWFNEGESAAMVVFPP 381
>sp|O93831|RAEP_CANAX Rab proteins geranylgeranyltransferase component A OS=Candida
albicans GN=MRS6 PE=3 SV=1
Length = 640
Score = 95.9 bits (237), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 101/383 (26%), Positives = 167/383 (43%), Gaps = 68/383 (17%)
Query: 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWK-----------R 54
DV+++GTGL+E IL+ LS G +VLH+D N YYG S+L + QL K +
Sbjct: 5 DVLIIGTGLQESILAAALSWQGTQVLHIDSNTYYGDSCSTLTIEQLKKWCGDVNSGKIHQ 64
Query: 55 FR-------GNEQPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGS 107
F+ G +Q + +S+DY +D+ PK + L+ +LI + V +YL F+++
Sbjct: 65 FQDAQIYIPGGKQSNQY--TSKDYGIDLTPKIMFCQSDLLSLLIKSRVYRYLEFQSLSNF 122
Query: 108 FVYN----KGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLT 163
V+ + KV+ D+ KS + + KR + + + DP + +
Sbjct: 123 HVFENDDFQQKVNATTKQDIFTDKS--LSLMTKR----YLMKFLKFLLLDPDYKQRVKPY 176
Query: 164 RVTTRE--LIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGG 221
T + L ++ L++ I+ + +++ L ++ + AL RMK + S +
Sbjct: 177 ADTPIQVFLQQEFKLEEPQINELVYSIGLSYKEQTSTKQAL---IRMKRFLSSFDVYGKF 233
Query: 222 SPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKV 281
+ G GEL Q F R +AV G TY LN +FD K+ +K+
Sbjct: 234 PCMVSKFGGPGELSQGFCRSAAVAGTTYKLNTN--LTDFDPISKIAHFNDGSHIKINEKI 291
Query: 282 VCDPSYLP-------NKVRK----------------------VGRVARAIAIM-SHPIPN 311
+ P+ LP NKV + G + AI + H +P
Sbjct: 292 IISPTQLPKFLQSSYNKVVENLQPYYVTRLVTVVRRDCKEWMSGNESSAIVVFPPHSLP- 350
Query: 312 TNDSHSVQVILPQKQLGRRSDIQ 334
T++ HSVQVI+ G D Q
Sbjct: 351 TDNQHSVQVIIQNGNSGVCPDGQ 373
>sp|O60112|YG63_SCHPO Uncharacterized Rab geranylgeranyltransferase C15C4.03
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC15C4.03 PE=3 SV=1
Length = 459
Score = 89.0 bits (219), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 92/320 (28%), Positives = 145/320 (45%), Gaps = 46/320 (14%)
Query: 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSL---NLIQLWKRFR----- 56
YDVI++GT L+ ILS LS +VLH+D N +YG SL +L Q+ ++ +
Sbjct: 7 YDVIIVGTNLRNSILSAALSWANQRVLHIDENSFYGEIDGSLTLRDLEQINEKIKKVDSS 66
Query: 57 ------GNEQPPAHLGSSRDYNVDMIPKF-----------IIANGALVRVLIHTDVTKYL 99
G+ + P + N D+IPK I A+ LV++L T + KYL
Sbjct: 67 QILNDNGSHKSPLKRFEVQFLNKDLIPKNKGSVIQFHPQEIFASSELVKLLSETKIYKYL 126
Query: 100 YFK-AVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQ----DYDENDP 154
K A + + + KVP + + + + + KR +F +V + ++N
Sbjct: 127 LLKPARSFRLLTSNEEWIKVPESRADIFNNKNLSLASKRIVMRFMKFVSNIADEQNQNLV 186
Query: 155 KTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAES 214
K E + ++++ I G +L +D + ALDTV + Y S
Sbjct: 187 KEWESKPFYKFLEEVFQLSGAIEESII--YGLCQSLSKD--IPTKDALDTVLK---YFHS 239
Query: 215 IARFQGGSPYIYPLYGLG-ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEG 273
+ G Y+ +YG G EL Q F R SAV GGT+ML + K+ +E K+ V +G
Sbjct: 240 FGMY-GDYSYLLAMYGTGSELCQGFCRSSAVMGGTFMLGQAIDKI---DESKI--VLKDG 293
Query: 274 ETAKCKKVVC--DPSYLPNK 291
T KK+V D LP++
Sbjct: 294 STLSAKKIVSSVDEGKLPHQ 313
>sp|P26484|FIXC_AZOC5 Protein FixC OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM
5975 / ORS 571) GN=fixC PE=3 SV=2
Length = 435
Score = 36.6 bits (83), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLI------QLWKR 54
+DE++D IV+G G+ + L+ GLKVL ++R +Y G ++ ++ +L
Sbjct: 2 IDEKFDAIVVGAGMAGNAATLTLARRGLKVLQLERGEYSGSKNVQGAILYADMLEKLVPD 61
Query: 55 FRGNEQPPAHLGSSRDYNVD 74
FR + HL R + +D
Sbjct: 62 FREDAPLERHLVEQRFWMLD 81
>sp|A5IYA9|EFTU_MYCAP Elongation factor Tu OS=Mycoplasma agalactiae (strain PG2) GN=tuf
PE=3 SV=1
Length = 396
Score = 36.2 bits (82), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 53/126 (42%), Gaps = 9/126 (7%)
Query: 92 HTDVTKYLYFKA--VDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDY 149
H D K + A +DGS + +P T L + +G+ K +++
Sbjct: 85 HADYIKNMITGAAQMDGSILVVAATDGAMPQTKEHVLLAKQVGV------PKMVVFLNKC 138
Query: 150 DENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFI-GHALALHRDDRYLNEPALDTVKRM 208
D P+ E +DL + REL+ KYG D + F+ G AL + E L+ + +
Sbjct: 139 DMIKPEDAEMIDLVEMEVRELLTKYGFDGDNTPFVRGSALQALQGKPEYEENILELMNAV 198
Query: 209 KLYAES 214
+ E+
Sbjct: 199 DTWIET 204
>sp|Q06401|3O1D_COMTE 3-oxosteroid 1-dehydrogenase OS=Comamonas testosteroni PE=1 SV=1
Length = 573
Score = 35.8 bits (81), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 2 DEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLW 52
++EYD+IV+G+G C GLK L +++ + +GG +S+L+ +W
Sbjct: 3 EQEYDLIVVGSGAGACWAPIRAQEQGLKTLVVEKTELFGG-TSALSGGGIW 52
>sp|Q55629|Y782_SYNY3 Uncharacterized protein slr0782 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=slr0782 PE=3 SV=1
Length = 471
Score = 34.7 bits (78), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 70/295 (23%), Positives = 120/295 (40%), Gaps = 34/295 (11%)
Query: 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQ-LWKRFRGNEQPPAH 64
D I++G+GL I + LS VL ++ + GG L W G P
Sbjct: 24 DCIIVGSGLSGLIAARNLSRVNYSVLVIEAQERLGGRMYGEYLPSGQWIDRGGQWVGPTQ 83
Query: 65 ---LGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPAT 121
L +YN++ P A+G ++VL+ D +Y + G F +G+ K+ +
Sbjct: 84 DRFLALLNEYNIERFPS--PADG--LKVLLF-DGKRYEFDGFFQGVF---QGEAPKISSD 135
Query: 122 DMEALKSPLMGIFEKRRARKFFIYVQDYDENDPK-THEGMDLTRVTTRELIAKYGLDDNT 180
+ + M +E KF Q DE P+ T E L T + I +NT
Sbjct: 136 EW----NDAMVAWE-----KFNTLAQSLDEQHPEATPENKKLDSQTFADWI-----KENT 181
Query: 181 IDFIGHALA--LHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLY-GLGELPQA 237
GH + R +L V + + + QG +P L+ G G++PQ
Sbjct: 182 HTAFGHWYFSYMCRAVGFLGPAEPSQVSLLHILWGHKSASQGENPEAELLHGGAGQIPQ- 240
Query: 238 FARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKV 292
+++A G + +L +P + D++G V T+ G+ +V P +L ++
Sbjct: 241 --KIAAELGNSILLGEPVIHIAQDDKGVEV-TTTTGKYQGKFAIVATPPHLAGRI 292
>sp|Q3U4I7|PYRD2_MOUSE Pyridine nucleotide-disulfide oxidoreductase domain-containing
protein 2 OS=Mus musculus GN=Pyroxd2 PE=2 SV=2
Length = 580
Score = 34.3 bits (77), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Query: 214 SIARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVT-SE 272
S+ QG Y+ G+G L A A +A G + K KV+ + EG+V GVT +
Sbjct: 271 SLEGTQGAWSYVQ--GGMGALSDAIASSAATRGASIFTEKTVAKVQVNSEGRVQGVTLQD 328
Query: 273 GETAKCKKVV 282
GE + + V+
Sbjct: 329 GEEVRSRVVL 338
>sp|Q05638|CHIX_STROI Exochitinase 1 OS=Streptomyces olivaceoviridis GN=chi01 PE=1 SV=1
Length = 597
Score = 33.9 bits (76), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 169 ELIAKYGLDDNTIDFIGHALALHRDDRYLNEP 200
++I +YGLD IDF GH+L+L+ DD P
Sbjct: 369 KIIDEYGLDGLDIDFEGHSLSLNADDTDFKNP 400
>sp|Q53208|FIXC_RHISN Protein FixC OS=Rhizobium sp. (strain NGR234) GN=fixC PE=3 SV=1
Length = 435
Score = 33.5 bits (75), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 26/42 (61%)
Query: 2 DEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES 43
+E +D IV+G G+ + ++ GLKVL ++R +Y G ++
Sbjct: 3 EERFDAIVVGAGMSGNAAAYTMASRGLKVLQLERGEYPGSKN 44
>sp|Q52QW2|CRTS2_ONCHC Prolycopene isomerase 2, chloroplastic OS=Oncidium hybrid cultivar
GN=CRTISO2 PE=2 SV=1
Length = 587
Score = 33.5 bits (75), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 26/41 (63%)
Query: 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES 43
EEYD IV+G+G+ + + L+V G +VL +++ GG S
Sbjct: 68 EEYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSS 108
>sp|Q52QW3|CRTS1_ONCHC Prolycopene isomerase 1, chloroplastic OS=Oncidium hybrid cultivar
GN=CRTISO1 PE=2 SV=1
Length = 587
Score = 33.1 bits (74), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 26/41 (63%)
Query: 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES 43
EEYD IV+G+G+ + + L+V G +VL +++ GG S
Sbjct: 68 EEYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSS 108
>sp|B2HIM0|FAA28_MYCMM Long-chain-fatty-acid--AMP ligase FadD28 OS=Mycobacterium marinum
(strain ATCC BAA-535 / M) GN=fadD28 PE=3 SV=1
Length = 580
Score = 33.1 bits (74), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 50/115 (43%), Gaps = 15/115 (13%)
Query: 169 ELIAKYGLDDNTIDF-IGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYP 227
EL AK DD+ +G+ L + + +PA T+KR +A+ ARF + P
Sbjct: 274 ELAAKKVSDDDMAGLDLGNVLTILSGSERV-QPA--TLKR---FADRFARFNLQEKVLRP 327
Query: 228 LYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVV 282
YGL E + VY T +P VEFD E G + E+ ++V
Sbjct: 328 SYGLAE--------ATVYVSTSRPGQPPELVEFDAESLSTGQAKQCESGAGTQLV 374
>sp|Q68FT3|PYRD2_RAT Pyridine nucleotide-disulfide oxidoreductase domain-containing
protein 2 OS=Rattus norvegicus GN=Pyroxd2 PE=2 SV=1
Length = 581
Score = 32.7 bits (73), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 214 SIARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEG 273
S+ QG Y+ G+G L A A + +G + K KV+ + EG+V GV +G
Sbjct: 272 SLEGMQGAWSYVQ--GGMGALSDAIASSATAHGASIFTEKTVAKVQVNSEGRVQGVVLQG 329
>sp|P11707|CP3A6_RABIT Cytochrome P450 3A6 OS=Oryctolagus cuniculus GN=CYP3A6 PE=2 SV=2
Length = 501
Score = 32.7 bits (73), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
Query: 121 TDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELI---AKYGLD 177
T +E +K + +KRR + + + + +H+ +D V + +I A Y
Sbjct: 249 TSVEKIKDDRLKDKQKRRVDFLQLMINSQNSKEIDSHKALDDIEVVAQSIIILFAGYETT 308
Query: 178 DNTIDFIGHALALHRDDRYLNEPALDTV 205
+T+ FI H LA H D + + +DT+
Sbjct: 309 SSTLSFIMHLLATHPDVQQKLQEEIDTL 336
>sp|P09820|FIXC_RHIME Protein FixC OS=Rhizobium meliloti (strain 1021) GN=fixC PE=3
SV=1
Length = 435
Score = 32.7 bits (73), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 26/41 (63%)
Query: 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES 43
E++D IV+G G+ + ++ GLKVL ++R +Y G ++
Sbjct: 4 EKFDAIVVGAGMSGNAAAYAMASRGLKVLQLERGEYPGSKN 44
>sp|Q2VEX9|CRTSO_DAUCA Prolycopene isomerase, chloroplastic OS=Daucus carota GN=CRTISO
PE=2 SV=1
Length = 615
Score = 32.0 bits (71), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 8/89 (8%)
Query: 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKR--FRGNEQP 61
EYD IV+G+G+ + + L+V G KVL +++ GG S ++R F +
Sbjct: 97 EYDAIVIGSGIGGLVAATQLAVKGAKVLVLEKYLIPGGSSG------YYERDGFTFDVGS 150
Query: 62 PAHLGSSRDYNVDMIPKFIIANGALVRVL 90
G S N+++I + + A G + V+
Sbjct: 151 SVMFGFSDKGNLNLITQALAAVGCKMEVI 179
>sp|A6UWL1|GGR_META3 Digeranylgeranylglycerophospholipid reductase OS=Methanococcus
aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=Maeo_1307
PE=3 SV=1
Length = 391
Score = 31.6 bits (70), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 39/87 (44%), Gaps = 3/87 (3%)
Query: 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQ 60
+D EYDVIV+G G + S S++G K L +D++ G + F G
Sbjct: 5 LDSEYDVIVIGAGPGGSMASYHSSINGAKTLLIDKSQEIGTPVRCAEAVPYLDEF-GINP 63
Query: 61 PPAHLGSSRDYNVDMIP--KFIIANGA 85
P+ + S D + + P K II G
Sbjct: 64 DPSFIRSKIDGGILVAPNGKKIIVKGG 90
>sp|Q5RAP5|PYRD2_PONAB Pyridine nucleotide-disulfide oxidoreductase domain-containing
protein 2 OS=Pongo abelii GN=PYROXD2 PE=2 SV=1
Length = 581
Score = 31.6 bits (70), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 25/53 (47%)
Query: 230 GLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVV 282
G+G L A A + +G + K KV+ + EG V GV E T KVV
Sbjct: 286 GMGALSDAIASSATTHGASIFTEKTVAKVQVNSEGCVQGVVLEDGTEVRSKVV 338
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.138 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 135,148,621
Number of Sequences: 539616
Number of extensions: 5941456
Number of successful extensions: 13672
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 13556
Number of HSP's gapped (non-prelim): 64
length of query: 342
length of database: 191,569,459
effective HSP length: 118
effective length of query: 224
effective length of database: 127,894,771
effective search space: 28648428704
effective search space used: 28648428704
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)