Query 019351
Match_columns 342
No_of_seqs 241 out of 2112
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 08:45:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019351.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019351hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00996 GDI: GDP dissociation 100.0 3.6E-55 7.8E-60 395.1 30.4 336 1-337 1-337 (438)
2 PTZ00363 rab-GDP dissociation 100.0 4.1E-53 8.8E-58 387.3 36.8 338 1-339 1-340 (443)
3 KOG1439 RAB proteins geranylge 100.0 2.7E-51 5.9E-56 352.2 26.3 338 1-339 1-339 (440)
4 COG5044 MRS6 RAB proteins gera 100.0 1.7E-42 3.8E-47 294.6 22.7 328 1-335 1-334 (434)
5 KOG4405 GDP dissociation inhib 100.0 5.6E-36 1.2E-40 257.4 19.3 303 3-312 7-371 (547)
6 PRK07233 hypothetical protein; 99.9 9.5E-23 2.1E-27 190.3 24.3 250 6-287 1-252 (434)
7 COG1232 HemY Protoporphyrinoge 99.9 1.2E-23 2.7E-28 190.7 16.9 247 6-287 2-266 (444)
8 TIGR02734 crtI_fam phytoene de 99.9 7.1E-23 1.5E-27 194.3 20.4 249 7-287 1-274 (502)
9 PRK12416 protoporphyrinogen ox 99.9 1.8E-22 3.8E-27 189.8 21.8 246 6-287 3-278 (463)
10 COG1233 Phytoene dehydrogenase 99.9 5.6E-23 1.2E-27 192.9 18.3 249 4-287 3-279 (487)
11 PLN02576 protoporphyrinogen ox 99.9 3.4E-22 7.3E-27 189.6 22.2 251 3-287 11-295 (496)
12 TIGR00562 proto_IX_ox protopor 99.9 2.3E-22 5E-27 189.2 20.3 242 5-287 3-277 (462)
13 PRK07208 hypothetical protein; 99.9 8.7E-22 1.9E-26 186.0 23.3 251 1-287 1-278 (479)
14 TIGR02730 carot_isom carotene 99.9 1.4E-22 3.1E-27 191.4 17.2 252 5-288 1-285 (493)
15 PRK11883 protoporphyrinogen ox 99.9 1.1E-21 2.3E-26 184.2 18.7 246 6-287 2-273 (451)
16 TIGR02733 desat_CrtD C-3',4' d 99.9 8.9E-22 1.9E-26 186.3 17.6 251 5-287 2-292 (492)
17 TIGR02732 zeta_caro_desat caro 99.9 5.8E-20 1.3E-24 172.1 23.6 260 6-288 1-283 (474)
18 PLN02612 phytoene desaturase 99.9 2.7E-19 5.9E-24 170.8 25.5 256 4-287 93-364 (567)
19 TIGR02731 phytoene_desat phyto 99.9 3.1E-19 6.6E-24 167.4 25.2 254 6-287 1-274 (453)
20 PLN02487 zeta-carotene desatur 99.8 6E-19 1.3E-23 166.8 23.4 261 5-288 76-359 (569)
21 PRK13977 myosin-cross-reactive 99.8 1.4E-18 3E-23 161.5 19.7 241 4-287 22-291 (576)
22 PLN02268 probable polyamine ox 99.8 5E-19 1.1E-23 165.2 13.8 253 6-311 2-293 (435)
23 COG2907 Predicted NAD/FAD-bind 99.7 5.7E-17 1.2E-21 138.3 16.2 254 4-286 8-270 (447)
24 TIGR03467 HpnE squalene-associ 99.7 3.6E-16 7.8E-21 145.4 20.7 237 18-287 1-252 (419)
25 PLN02568 polyamine oxidase 99.7 1.1E-16 2.4E-21 151.4 16.9 86 223-311 233-341 (539)
26 PLN02529 lysine-specific histo 99.7 4E-16 8.6E-21 150.7 20.6 263 4-312 160-449 (738)
27 PLN02328 lysine-specific histo 99.7 3.5E-16 7.6E-21 151.8 18.9 265 4-312 238-529 (808)
28 PLN02676 polyamine oxidase 99.7 2.9E-16 6.2E-21 147.5 15.5 267 3-312 25-328 (487)
29 KOG4254 Phytoene desaturase [C 99.7 2.5E-16 5.4E-21 138.7 13.1 73 215-288 246-320 (561)
30 PLN03000 amine oxidase 99.7 5.2E-15 1.1E-19 143.7 18.9 263 4-312 184-473 (881)
31 COG1231 Monoamine oxidase [Ami 99.6 2.7E-15 5.7E-20 133.7 13.1 46 3-48 6-51 (450)
32 KOG0029 Amine oxidase [Seconda 99.6 4.2E-15 9.1E-20 138.4 12.7 46 4-49 15-60 (501)
33 KOG1276 Protoporphyrinogen oxi 99.6 3.4E-14 7.4E-19 124.8 17.1 229 5-265 12-282 (491)
34 PF01266 DAO: FAD dependent ox 99.6 4.5E-14 9.7E-19 128.2 13.6 86 224-310 136-230 (358)
35 TIGR03329 Phn_aa_oxid putative 99.6 2.5E-13 5.3E-18 127.6 18.0 84 224-310 172-262 (460)
36 COG2081 Predicted flavoprotein 99.5 1.7E-13 3.6E-18 120.4 14.9 62 226-289 104-169 (408)
37 PRK11728 hydroxyglutarate oxid 99.5 1.1E-13 2.4E-18 127.5 14.0 57 231-289 148-204 (393)
38 COG0579 Predicted dehydrogenas 99.5 1.1E-13 2.4E-18 125.2 13.1 58 231-289 152-211 (429)
39 KOG0685 Flavin-containing amin 99.5 9.3E-13 2E-17 117.7 18.3 46 4-49 21-67 (498)
40 PF03486 HI0933_like: HI0933-l 99.5 5E-14 1.1E-18 128.6 10.3 61 225-286 101-163 (409)
41 COG3349 Uncharacterized conser 99.5 1.1E-13 2.4E-18 125.8 11.4 251 6-286 2-275 (485)
42 PLN02976 amine oxidase 99.5 5.4E-13 1.2E-17 133.9 16.8 44 4-47 693-736 (1713)
43 TIGR01377 soxA_mon sarcosine o 99.5 1E-12 2.2E-17 120.7 17.2 57 231-289 144-200 (380)
44 PRK11101 glpA sn-glycerol-3-ph 99.5 1.8E-12 4E-17 123.8 19.1 60 231-291 148-213 (546)
45 PF01593 Amino_oxidase: Flavin 99.5 2E-13 4.4E-18 127.2 9.5 64 14-95 1-65 (450)
46 PTZ00383 malate:quinone oxidor 99.5 1.5E-12 3.2E-17 121.9 15.2 59 231-290 210-274 (497)
47 PRK00711 D-amino acid dehydrog 99.4 4.7E-12 1E-16 117.7 17.3 59 231-290 200-258 (416)
48 TIGR00031 UDP-GALP_mutase UDP- 99.4 2.2E-12 4.8E-17 116.3 14.5 93 5-121 2-96 (377)
49 TIGR01373 soxB sarcosine oxida 99.4 4.6E-12 1E-16 117.4 17.0 58 232-289 183-240 (407)
50 COG0578 GlpA Glycerol-3-phosph 99.4 5.9E-12 1.3E-16 116.4 17.3 107 223-336 153-277 (532)
51 TIGR03364 HpnW_proposed FAD de 99.4 2.6E-12 5.6E-17 117.3 15.0 74 231-310 144-224 (365)
52 PF13450 NAD_binding_8: NAD(P) 99.4 2E-13 4.4E-18 92.0 5.3 41 9-49 1-41 (68)
53 PRK11259 solA N-methyltryptoph 99.4 4.3E-12 9.4E-17 116.3 15.7 58 231-290 148-205 (376)
54 COG0665 DadA Glycine/D-amino a 99.4 3.5E-12 7.6E-17 117.4 14.5 84 225-310 146-240 (387)
55 PRK12409 D-amino acid dehydrog 99.4 5.5E-12 1.2E-16 117.0 15.9 59 231-290 196-259 (410)
56 COG0562 Glf UDP-galactopyranos 99.4 3.3E-12 7.1E-17 108.6 12.0 97 4-121 1-98 (374)
57 PRK08274 tricarballylate dehyd 99.4 1.1E-11 2.4E-16 116.7 17.0 59 228-287 127-190 (466)
58 KOG2820 FAD-dependent oxidored 99.4 1.7E-11 3.7E-16 104.9 15.0 58 232-289 153-212 (399)
59 PRK10157 putative oxidoreducta 99.4 1.5E-11 3.2E-16 114.3 16.0 56 233-289 109-164 (428)
60 PRK01747 mnmC bifunctional tRN 99.3 9.9E-12 2.1E-16 121.8 13.3 64 224-290 397-464 (662)
61 PRK12266 glpD glycerol-3-phosp 99.3 1.2E-11 2.6E-16 117.3 13.3 44 1-44 3-46 (508)
62 PRK10015 oxidoreductase; Provi 99.3 4.3E-11 9.3E-16 111.2 16.3 55 233-288 109-163 (429)
63 TIGR01320 mal_quin_oxido malat 99.3 4.2E-11 9.2E-16 112.4 16.1 66 225-290 168-241 (483)
64 PLN02464 glycerol-3-phosphate 99.3 3.9E-11 8.5E-16 116.1 16.3 76 231-306 231-321 (627)
65 PRK13369 glycerol-3-phosphate 99.3 9.6E-12 2.1E-16 117.9 11.7 59 231-291 154-217 (502)
66 PRK05257 malate:quinone oxidor 99.3 1.1E-10 2.3E-15 109.8 18.1 66 225-290 173-247 (494)
67 KOG2844 Dimethylglycine dehydr 99.3 2.7E-11 5.7E-16 112.0 12.3 79 231-310 186-270 (856)
68 COG0644 FixC Dehydrogenases (f 99.3 7.9E-11 1.7E-15 108.5 15.3 42 4-45 3-44 (396)
69 PRK06481 fumarate reductase fl 99.3 1.5E-10 3.3E-15 109.8 17.3 54 232-286 190-248 (506)
70 PF06100 Strep_67kDa_ant: Stre 99.3 2.1E-10 4.6E-15 104.2 16.8 240 5-286 3-271 (500)
71 PRK04176 ribulose-1,5-biphosph 99.3 6.7E-11 1.5E-15 101.9 13.0 40 4-43 25-64 (257)
72 TIGR00292 thiazole biosynthesi 99.3 1.2E-10 2.6E-15 100.0 14.4 40 4-43 21-60 (254)
73 COG3380 Predicted NAD/FAD-depe 99.3 1.8E-11 4E-16 101.7 8.0 44 6-49 3-46 (331)
74 PRK08773 2-octaprenyl-3-methyl 99.2 1.1E-10 2.5E-15 107.5 12.5 56 232-289 113-169 (392)
75 PRK12845 3-ketosteroid-delta-1 99.2 9.3E-10 2E-14 105.3 18.7 57 228-286 214-275 (564)
76 PRK13339 malate:quinone oxidor 99.2 5.1E-10 1.1E-14 104.7 16.5 59 231-290 183-248 (497)
77 PRK07121 hypothetical protein; 99.2 1.1E-09 2.3E-14 104.0 18.6 58 231-288 176-238 (492)
78 TIGR01813 flavo_cyto_c flavocy 99.2 7.7E-10 1.7E-14 103.6 17.5 57 232-288 130-191 (439)
79 PF00890 FAD_binding_2: FAD bi 99.2 6.3E-10 1.4E-14 103.5 16.1 57 231-288 140-202 (417)
80 PRK06847 hypothetical protein; 99.2 2E-10 4.4E-15 105.2 12.5 56 233-289 108-163 (375)
81 PRK06175 L-aspartate oxidase; 99.2 4.1E-10 8.9E-15 104.7 14.4 42 1-43 1-42 (433)
82 PF00732 GMC_oxred_N: GMC oxid 99.1 4.8E-10 1E-14 99.3 11.9 39 5-43 1-40 (296)
83 PRK12834 putative FAD-binding 99.1 2.5E-09 5.5E-14 102.6 17.7 44 1-44 1-46 (549)
84 PRK12835 3-ketosteroid-delta-1 99.1 1.2E-09 2.6E-14 105.2 15.2 42 2-43 9-50 (584)
85 PRK06134 putative FAD-binding 99.1 2.2E-09 4.8E-14 103.5 17.1 57 232-289 217-278 (581)
86 TIGR02032 GG-red-SF geranylger 99.1 1.4E-09 3E-14 96.1 14.5 56 233-289 92-148 (295)
87 PRK08163 salicylate hydroxylas 99.1 1.7E-09 3.6E-14 99.9 14.6 56 233-289 110-166 (396)
88 PRK12842 putative succinate de 99.1 5.7E-09 1.2E-13 100.7 18.7 41 4-44 9-49 (574)
89 PRK07190 hypothetical protein; 99.1 1.5E-09 3.4E-14 102.3 14.4 55 234-289 111-165 (487)
90 PRK08958 sdhA succinate dehydr 99.1 1.9E-09 4.1E-14 103.9 14.5 55 232-286 143-203 (588)
91 TIGR00275 flavoprotein, HI0933 99.1 9.2E-10 2E-14 101.4 11.9 55 231-287 104-158 (400)
92 PRK12839 hypothetical protein; 99.1 5.5E-09 1.2E-13 100.3 17.4 42 3-44 7-48 (572)
93 PRK12844 3-ketosteroid-delta-1 99.1 1.5E-09 3.2E-14 104.1 13.4 43 2-44 4-46 (557)
94 PRK12843 putative FAD-binding 99.1 3E-09 6.5E-14 102.5 15.5 56 232-288 221-281 (578)
95 PRK05714 2-octaprenyl-3-methyl 99.1 9.9E-10 2.2E-14 101.7 11.8 55 233-289 113-168 (405)
96 PTZ00139 Succinate dehydrogena 99.1 2.9E-09 6.2E-14 103.1 15.0 55 232-286 166-226 (617)
97 PRK06185 hypothetical protein; 99.1 3.1E-09 6.6E-14 98.6 14.4 37 2-38 4-40 (407)
98 PRK07804 L-aspartate oxidase; 99.1 2.8E-09 6E-14 102.0 14.3 41 3-43 15-55 (541)
99 COG0654 UbiH 2-polyprenyl-6-me 99.1 4.3E-09 9.4E-14 96.8 14.6 57 232-289 104-162 (387)
100 COG1635 THI4 Ribulose 1,5-bisp 99.1 1.6E-10 3.5E-15 93.3 4.4 41 4-44 30-70 (262)
101 PRK06184 hypothetical protein; 99.0 1.9E-09 4.2E-14 102.5 12.4 55 234-289 111-168 (502)
102 TIGR01988 Ubi-OHases Ubiquinon 99.0 1.4E-09 3E-14 100.1 11.0 56 232-289 106-163 (385)
103 PRK09078 sdhA succinate dehydr 99.0 4E-09 8.6E-14 102.0 14.3 55 232-286 149-209 (598)
104 PRK08013 oxidoreductase; Provi 99.0 2.4E-09 5.1E-14 99.0 12.1 56 233-289 112-168 (400)
105 PRK12837 3-ketosteroid-delta-1 99.0 1.4E-08 2.9E-13 96.7 17.5 41 3-44 6-46 (513)
106 PRK07333 2-octaprenyl-6-methox 99.0 2.5E-09 5.5E-14 99.0 12.1 57 232-289 111-167 (403)
107 PF01494 FAD_binding_3: FAD bi 99.0 2.4E-09 5.2E-14 97.1 11.6 56 233-289 112-172 (356)
108 PLN02661 Putative thiazole syn 99.0 6.5E-09 1.4E-13 92.0 13.8 40 4-43 92-132 (357)
109 PRK09126 hypothetical protein; 99.0 2.3E-09 5.1E-14 98.8 11.6 38 1-39 1-38 (392)
110 PF01946 Thi4: Thi4 family; PD 99.0 2E-10 4.3E-15 93.4 3.9 41 4-44 17-57 (230)
111 TIGR00551 nadB L-aspartate oxi 99.0 5E-09 1.1E-13 99.2 13.9 56 232-288 128-188 (488)
112 PRK07057 sdhA succinate dehydr 99.0 8E-09 1.7E-13 99.7 15.4 55 232-286 148-208 (591)
113 TIGR01984 UbiH 2-polyprenyl-6- 99.0 1.9E-09 4E-14 99.2 10.4 57 232-289 105-162 (382)
114 TIGR02485 CobZ_N-term precorri 99.0 1E-08 2.2E-13 95.8 15.4 62 226-287 117-181 (432)
115 TIGR01812 sdhA_frdA_Gneg succi 99.0 9E-09 2E-13 99.3 15.6 54 233-287 130-189 (566)
116 PRK08850 2-octaprenyl-6-methox 99.0 3.4E-09 7.3E-14 98.2 12.1 36 1-36 1-36 (405)
117 PRK06069 sdhA succinate dehydr 99.0 1.1E-08 2.5E-13 98.7 16.2 43 1-43 1-47 (577)
118 PRK07608 ubiquinone biosynthes 99.0 4.8E-09 1E-13 96.6 13.1 55 232-289 111-167 (388)
119 PRK07573 sdhA succinate dehydr 99.0 3.8E-09 8.2E-14 102.7 12.9 39 4-42 35-73 (640)
120 PRK06452 sdhA succinate dehydr 99.0 4.2E-09 9E-14 101.2 13.0 54 232-286 136-195 (566)
121 PRK07045 putative monooxygenas 99.0 6E-09 1.3E-13 96.0 13.6 57 233-289 107-165 (388)
122 PRK05945 sdhA succinate dehydr 99.0 3.9E-09 8.6E-14 101.7 12.8 55 232-287 135-195 (575)
123 PLN00128 Succinate dehydrogena 99.0 6.4E-09 1.4E-13 100.8 14.2 55 232-286 187-247 (635)
124 PRK07364 2-octaprenyl-6-methox 99.0 7.6E-09 1.6E-13 96.2 14.2 38 2-39 16-53 (415)
125 PRK07494 2-octaprenyl-6-methox 99.0 6E-09 1.3E-13 96.0 13.4 56 232-289 111-167 (388)
126 PRK02106 choline dehydrogenase 99.0 1.4E-08 3E-13 97.9 16.1 38 1-38 2-40 (560)
127 PRK08243 4-hydroxybenzoate 3-m 99.0 1.4E-08 3.1E-13 93.6 15.5 35 4-38 2-36 (392)
128 PRK06834 hypothetical protein; 99.0 6.4E-09 1.4E-13 98.2 13.4 55 233-289 101-156 (488)
129 PRK07395 L-aspartate oxidase; 99.0 5.7E-09 1.2E-13 99.8 12.7 55 232-286 134-194 (553)
130 PRK08401 L-aspartate oxidase; 99.0 3E-08 6.5E-13 93.3 17.3 56 232-289 120-175 (466)
131 PF13738 Pyr_redox_3: Pyridine 99.0 3.2E-09 6.8E-14 88.6 8.9 37 8-44 1-38 (203)
132 PRK05192 tRNA uridine 5-carbox 99.0 9.4E-09 2E-13 97.4 12.8 42 1-42 1-43 (618)
133 PRK08205 sdhA succinate dehydr 99.0 1.1E-08 2.5E-13 98.7 13.7 56 232-287 140-204 (583)
134 TIGR03378 glycerol3P_GlpB glyc 98.9 6.6E-08 1.4E-12 88.0 17.4 58 232-290 263-324 (419)
135 PLN02697 lycopene epsilon cycl 98.9 1.1E-08 2.4E-13 96.6 12.9 55 233-289 193-248 (529)
136 PRK07803 sdhA succinate dehydr 98.9 1.7E-08 3.7E-13 98.0 14.5 39 4-42 8-46 (626)
137 PRK07843 3-ketosteroid-delta-1 98.9 6.6E-08 1.4E-12 92.9 18.4 42 3-44 6-47 (557)
138 PRK07236 hypothetical protein; 98.9 2E-08 4.4E-13 92.4 14.2 35 4-38 6-40 (386)
139 PRK08020 ubiF 2-octaprenyl-3-m 98.9 3.2E-08 7E-13 91.2 15.1 55 233-289 113-169 (391)
140 PLN02463 lycopene beta cyclase 98.9 1.4E-08 3E-13 94.4 12.4 54 233-289 115-169 (447)
141 PRK07588 hypothetical protein; 98.9 1.2E-08 2.7E-13 94.0 12.0 55 233-289 104-158 (391)
142 PRK08071 L-aspartate oxidase; 98.9 2E-08 4.3E-13 95.5 13.3 54 232-287 130-188 (510)
143 PLN02985 squalene monooxygenas 98.9 3E-08 6.6E-13 94.0 14.6 36 3-38 42-77 (514)
144 PRK08244 hypothetical protein; 98.9 2.6E-08 5.6E-13 94.7 13.8 56 233-289 101-159 (493)
145 PRK08275 putative oxidoreducta 98.9 3.8E-08 8.3E-13 94.6 14.8 56 232-287 137-198 (554)
146 PRK06183 mhpA 3-(3-hydroxyphen 98.9 3.1E-08 6.8E-13 95.0 14.1 38 4-41 10-47 (538)
147 PRK06263 sdhA succinate dehydr 98.9 6.2E-08 1.3E-12 93.0 16.1 56 232-287 134-195 (543)
148 PRK08132 FAD-dependent oxidore 98.9 3.1E-08 6.7E-13 95.3 14.1 37 3-39 22-58 (547)
149 PRK07512 L-aspartate oxidase; 98.9 2.9E-08 6.3E-13 94.4 13.6 54 232-286 136-194 (513)
150 TIGR01790 carotene-cycl lycope 98.9 2.2E-08 4.7E-13 92.3 12.4 37 6-42 1-37 (388)
151 PRK06854 adenylylsulfate reduc 98.9 7.3E-08 1.6E-12 93.4 16.5 55 232-287 132-193 (608)
152 KOG0042 Glycerol-3-phosphate d 98.9 6.2E-10 1.4E-14 100.9 2.0 71 221-291 211-289 (680)
153 PRK06753 hypothetical protein; 98.9 1.2E-08 2.6E-13 93.4 10.5 35 6-40 2-36 (373)
154 PLN02815 L-aspartate oxidase 98.9 2.1E-08 4.6E-13 96.4 12.1 39 4-43 29-67 (594)
155 PRK08626 fumarate reductase fl 98.9 3.1E-08 6.7E-13 96.6 13.3 54 232-286 158-217 (657)
156 PRK05732 2-octaprenyl-6-methox 98.9 1.8E-08 3.8E-13 93.1 11.2 54 234-289 114-169 (395)
157 TIGR01810 betA choline dehydro 98.9 1.3E-07 2.7E-12 90.8 17.0 54 233-287 194-253 (532)
158 TIGR02360 pbenz_hydroxyl 4-hyd 98.9 7.5E-08 1.6E-12 88.7 14.7 35 4-38 2-36 (390)
159 PRK06126 hypothetical protein; 98.8 2.6E-08 5.6E-13 95.9 11.8 36 3-38 6-41 (545)
160 PRK05868 hypothetical protein; 98.8 6.9E-08 1.5E-12 88.3 13.4 34 6-39 3-36 (372)
161 PTZ00306 NADH-dependent fumara 98.8 1.2E-07 2.6E-12 98.2 16.4 41 4-44 409-449 (1167)
162 PF06039 Mqo: Malate:quinone o 98.8 2E-07 4.4E-12 84.3 15.4 55 231-286 180-241 (488)
163 PRK06617 2-octaprenyl-6-methox 98.8 1E-07 2.2E-12 87.4 14.0 56 232-289 104-160 (374)
164 PRK09231 fumarate reductase fl 98.8 7.8E-08 1.7E-12 92.8 12.6 53 233-286 134-193 (582)
165 TIGR02462 pyranose_ox pyranose 98.8 2.9E-07 6.4E-12 87.0 15.9 39 5-43 1-39 (544)
166 COG2303 BetA Choline dehydroge 98.8 2.6E-07 5.5E-12 88.3 15.6 37 1-37 4-40 (542)
167 PRK15317 alkyl hydroperoxide r 98.8 9.7E-08 2.1E-12 91.1 12.6 38 4-43 211-248 (517)
168 TIGR01811 sdhA_Bsu succinate d 98.8 1.5E-07 3.3E-12 91.0 14.0 35 7-41 1-35 (603)
169 KOG2853 Possible oxidoreductas 98.7 2.4E-07 5.2E-12 79.9 13.0 42 3-44 85-130 (509)
170 PRK06475 salicylate hydroxylas 98.7 1.6E-07 3.5E-12 86.8 13.2 57 232-289 107-167 (400)
171 PRK09077 L-aspartate oxidase; 98.7 1.3E-07 2.8E-12 90.5 12.8 40 3-43 7-46 (536)
172 PF13454 NAD_binding_9: FAD-NA 98.7 8.1E-08 1.7E-12 76.5 9.4 43 244-287 112-155 (156)
173 PF05834 Lycopene_cycl: Lycope 98.7 1.4E-06 2.9E-11 79.8 18.7 34 6-39 1-36 (374)
174 KOG1298 Squalene monooxygenase 98.7 2.9E-07 6.3E-12 80.7 13.4 34 3-36 44-77 (509)
175 PF01134 GIDA: Glucose inhibit 98.7 3.1E-08 6.8E-13 89.1 7.7 52 234-287 97-150 (392)
176 TIGR01176 fum_red_Fp fumarate 98.7 1.7E-07 3.8E-12 90.2 13.3 54 232-286 132-192 (580)
177 PRK05329 anaerobic glycerol-3- 98.7 3.4E-07 7.3E-12 84.3 13.8 55 233-288 260-317 (422)
178 PF04820 Trp_halogenase: Trypt 98.7 1.4E-07 3E-12 88.2 11.3 56 232-288 154-210 (454)
179 KOG2404 Fumarate reductase, fl 98.7 3.8E-07 8.3E-12 78.1 12.4 39 6-44 11-49 (477)
180 PLN02172 flavin-containing mon 98.7 2E-08 4.3E-13 93.9 5.0 43 3-45 9-51 (461)
181 TIGR03140 AhpF alkyl hydropero 98.7 1.9E-07 4.2E-12 89.0 11.8 38 4-43 212-249 (515)
182 PRK06116 glutathione reductase 98.7 1.8E-08 4E-13 94.5 4.7 43 1-44 1-43 (450)
183 PRK06996 hypothetical protein; 98.7 2.3E-07 5E-12 85.7 11.6 54 232-287 115-172 (398)
184 PRK06467 dihydrolipoamide dehy 98.6 2.6E-08 5.7E-13 93.9 5.1 44 1-44 1-44 (471)
185 PRK05249 soluble pyridine nucl 98.6 2.7E-08 5.8E-13 93.8 5.1 58 232-290 216-273 (461)
186 COG4716 Myosin-crossreactive a 98.6 2.8E-07 6.2E-12 80.5 10.2 95 162-261 161-256 (587)
187 TIGR02352 thiamin_ThiO glycine 98.6 1.1E-06 2.4E-11 79.2 14.5 65 226-291 128-195 (337)
188 PRK06370 mercuric reductase; V 98.6 3.8E-08 8.3E-13 92.7 5.1 43 1-44 2-44 (463)
189 PRK05976 dihydrolipoamide dehy 98.6 4E-08 8.8E-13 92.8 5.0 44 1-45 1-44 (472)
190 COG2072 TrkA Predicted flavopr 98.6 3.9E-08 8.4E-13 91.5 4.7 49 2-50 6-55 (443)
191 PRK06115 dihydrolipoamide dehy 98.6 3.8E-08 8.3E-13 92.7 4.7 43 1-44 1-43 (466)
192 PRK08010 pyridine nucleotide-d 98.6 4.4E-08 9.5E-13 91.8 4.8 57 232-290 199-255 (441)
193 TIGR00136 gidA glucose-inhibit 98.6 6E-07 1.3E-11 85.2 12.3 39 5-43 1-39 (617)
194 PRK09897 hypothetical protein; 98.6 9.6E-07 2.1E-11 83.6 13.1 40 5-44 2-44 (534)
195 COG3075 GlpB Anaerobic glycero 98.6 2.3E-06 5E-11 73.7 14.0 53 233-286 259-314 (421)
196 PLN02785 Protein HOTHEAD 98.6 1.8E-06 3.9E-11 83.1 15.1 34 4-38 55-88 (587)
197 PRK07818 dihydrolipoamide dehy 98.6 6.8E-08 1.5E-12 91.1 5.1 44 1-45 1-44 (466)
198 PRK07251 pyridine nucleotide-d 98.6 6.6E-08 1.4E-12 90.5 4.8 56 233-290 199-254 (438)
199 PF12831 FAD_oxidored: FAD dep 98.5 6.1E-08 1.3E-12 90.2 4.5 40 6-45 1-40 (428)
200 TIGR03143 AhpF_homolog putativ 98.5 6.8E-08 1.5E-12 92.8 4.9 43 1-44 1-43 (555)
201 PRK06327 dihydrolipoamide dehy 98.5 9.1E-08 2E-12 90.4 5.1 46 1-46 1-52 (475)
202 PRK08849 2-octaprenyl-3-methyl 98.5 9.1E-08 2E-12 88.0 4.7 54 234-289 112-167 (384)
203 TIGR01424 gluta_reduc_2 glutat 98.5 8.5E-08 1.8E-12 89.9 4.5 56 233-290 208-264 (446)
204 TIGR01350 lipoamide_DH dihydro 98.5 1E-07 2.2E-12 89.9 4.8 57 232-290 211-270 (461)
205 TIGR01421 gluta_reduc_1 glutat 98.5 1E-07 2.2E-12 89.3 4.7 41 3-44 1-41 (450)
206 TIGR03197 MnmC_Cterm tRNA U-34 98.5 1.1E-06 2.3E-11 80.9 11.0 64 225-291 125-192 (381)
207 PRK06416 dihydrolipoamide dehy 98.5 1.3E-07 2.8E-12 89.2 4.8 42 3-45 3-44 (462)
208 PRK06292 dihydrolipoamide dehy 98.5 1.4E-07 3E-12 89.0 5.0 42 1-44 1-42 (460)
209 COG1148 HdrA Heterodisulfide r 98.5 1.2E-07 2.5E-12 85.4 4.1 43 5-47 125-167 (622)
210 TIGR02023 BchP-ChlP geranylger 98.5 1.4E-07 3.1E-12 86.8 4.5 32 5-36 1-32 (388)
211 KOG2852 Possible oxidoreductas 98.5 8.9E-06 1.9E-10 68.9 14.5 41 4-44 10-56 (380)
212 KOG2665 Predicted FAD-dependen 98.5 8.9E-07 1.9E-11 75.7 8.6 61 231-291 195-259 (453)
213 PLN00093 geranylgeranyl diphos 98.5 1.6E-07 3.4E-12 87.7 4.6 34 4-37 39-72 (450)
214 KOG1399 Flavin-containing mono 98.4 1.7E-07 3.6E-12 86.4 4.3 43 4-46 6-48 (448)
215 COG2509 Uncharacterized FAD-de 98.4 1.3E-05 2.9E-10 72.2 15.7 58 231-289 172-230 (486)
216 TIGR02028 ChlP geranylgeranyl 98.4 2.4E-07 5.1E-12 85.5 4.9 38 5-42 1-38 (398)
217 TIGR01292 TRX_reduct thioredox 98.4 2.3E-07 5E-12 82.2 4.5 39 5-44 1-39 (300)
218 PTZ00052 thioredoxin reductase 98.4 2.4E-07 5.2E-12 87.9 4.9 57 233-290 223-279 (499)
219 TIGR03315 Se_ygfK putative sel 98.4 2.3E-07 5.1E-12 93.1 4.9 41 4-44 537-577 (1012)
220 PRK14694 putative mercuric red 98.4 2.6E-07 5.7E-12 87.1 5.0 57 232-290 218-274 (468)
221 COG1249 Lpd Pyruvate/2-oxoglut 98.4 2.8E-07 6.1E-12 85.3 4.7 46 1-46 1-46 (454)
222 PRK13748 putative mercuric red 98.4 2.7E-07 5.9E-12 89.2 4.8 58 232-291 310-367 (561)
223 PRK12779 putative bifunctional 98.4 2.7E-07 5.8E-12 93.2 4.3 41 4-44 306-346 (944)
224 PRK08641 sdhA succinate dehydr 98.4 3.8E-07 8.2E-12 88.2 5.0 42 1-43 1-42 (589)
225 TIGR02053 MerA mercuric reduct 98.4 3.9E-07 8.5E-12 85.9 4.7 39 5-44 1-39 (463)
226 COG0492 TrxB Thioredoxin reduc 98.4 4.1E-07 8.9E-12 80.0 4.4 44 3-46 2-45 (305)
227 PRK12831 putative oxidoreducta 98.3 4.5E-07 9.9E-12 85.2 4.9 41 4-44 140-180 (464)
228 PTZ00058 glutathione reductase 98.3 4.5E-07 9.8E-12 86.7 4.8 42 3-45 47-88 (561)
229 PF00743 FMO-like: Flavin-bind 98.3 4.8E-07 1E-11 85.9 4.5 40 6-45 3-42 (531)
230 TIGR01989 COQ6 Ubiquinone bios 98.3 5.2E-07 1.1E-11 84.4 4.5 57 233-289 118-183 (437)
231 PRK14727 putative mercuric red 98.3 6.4E-07 1.4E-11 84.8 4.5 43 4-46 16-58 (479)
232 KOG2614 Kynurenine 3-monooxyge 98.3 8.3E-07 1.8E-11 78.9 4.7 39 5-43 3-41 (420)
233 PRK11445 putative oxidoreducta 98.3 6.8E-07 1.5E-11 81.2 4.3 34 5-39 2-35 (351)
234 PRK08294 phenol 2-monooxygenas 98.3 7.5E-07 1.6E-11 86.8 4.9 38 1-38 29-67 (634)
235 TIGR01789 lycopene_cycl lycope 98.3 7.5E-07 1.6E-11 81.2 4.6 37 6-42 1-39 (370)
236 PRK07538 hypothetical protein; 98.3 6.9E-07 1.5E-11 83.0 4.5 34 6-39 2-35 (413)
237 PRK05335 tRNA (uracil-5-)-meth 98.3 8.3E-07 1.8E-11 80.8 4.7 36 5-40 3-38 (436)
238 KOG2415 Electron transfer flav 98.3 7.2E-07 1.6E-11 79.0 4.1 45 3-47 75-125 (621)
239 PRK09853 putative selenate red 98.3 8.9E-07 1.9E-11 88.7 5.1 41 4-44 539-579 (1019)
240 PRK09564 coenzyme A disulfide 98.3 1.5E-05 3.2E-10 74.9 13.0 57 232-290 191-247 (444)
241 PLN02507 glutathione reductase 98.3 9.1E-07 2E-11 83.9 4.8 56 233-290 245-301 (499)
242 TIGR03377 glycerol3P_GlpA glyc 98.3 4.3E-05 9.3E-10 73.1 16.1 60 231-291 127-192 (516)
243 TIGR01423 trypano_reduc trypan 98.2 1E-06 2.2E-11 83.2 4.8 58 232-290 231-289 (486)
244 PTZ00367 squalene epoxidase; P 98.2 9.9E-07 2.1E-11 84.4 4.6 34 4-37 33-66 (567)
245 TIGR01372 soxA sarcosine oxida 98.2 1.1E-06 2.3E-11 90.0 4.9 42 4-45 163-204 (985)
246 TIGR01316 gltA glutamate synth 98.2 1.2E-06 2.7E-11 82.1 4.8 41 4-44 133-173 (449)
247 PRK12775 putative trifunctiona 98.2 1.1E-06 2.5E-11 89.5 4.8 41 4-44 430-470 (1006)
248 PRK10262 thioredoxin reductase 98.2 1.2E-06 2.7E-11 78.4 4.5 42 3-45 5-46 (321)
249 PRK12769 putative oxidoreducta 98.2 1.3E-06 2.7E-11 85.9 4.9 41 4-44 327-367 (654)
250 PLN02852 ferredoxin-NADP+ redu 98.2 1.4E-06 3E-11 81.7 4.8 42 4-45 26-69 (491)
251 PLN02927 antheraxanthin epoxid 98.2 1.2E-06 2.7E-11 84.6 4.6 35 3-37 80-114 (668)
252 TIGR00137 gid_trmFO tRNA:m(5)U 98.2 1.4E-06 3E-11 79.8 4.4 37 5-41 1-37 (433)
253 PLN02546 glutathione reductase 98.2 1.7E-06 3.6E-11 82.9 4.9 43 4-46 79-130 (558)
254 PRK12778 putative bifunctional 98.2 1.9E-06 4.1E-11 86.0 5.1 41 4-44 431-471 (752)
255 COG3573 Predicted oxidoreducta 98.2 2E-06 4.3E-11 74.2 4.4 41 4-44 5-47 (552)
256 PTZ00153 lipoamide dehydrogena 98.2 2E-06 4.2E-11 83.6 4.7 42 4-45 116-158 (659)
257 PRK12810 gltD glutamate syntha 98.2 2.2E-06 4.7E-11 81.0 4.8 41 4-44 143-183 (471)
258 TIGR03219 salicylate_mono sali 98.1 2.2E-06 4.7E-11 79.7 4.6 35 6-40 2-37 (414)
259 COG1053 SdhA Succinate dehydro 98.1 2.6E-06 5.6E-11 81.2 4.7 43 2-44 4-46 (562)
260 KOG1238 Glucose dehydrogenase/ 98.1 0.00012 2.6E-09 69.1 15.5 37 3-39 56-93 (623)
261 PRK12814 putative NADPH-depend 98.1 3.3E-06 7.1E-11 82.7 4.8 40 5-44 194-233 (652)
262 PRK11749 dihydropyrimidine deh 98.1 3.9E-06 8.5E-11 79.0 5.1 41 4-44 140-180 (457)
263 TIGR01318 gltD_gamma_fam gluta 98.1 4E-06 8.6E-11 79.0 4.9 41 4-44 141-181 (467)
264 PRK12809 putative oxidoreducta 98.1 3.7E-06 8E-11 82.3 4.5 41 4-44 310-350 (639)
265 TIGR01438 TGR thioredoxin and 98.0 4.9E-06 1.1E-10 78.7 4.7 57 233-290 221-280 (484)
266 COG0493 GltD NADPH-dependent g 98.0 4.3E-06 9.3E-11 77.6 4.1 41 5-45 124-164 (457)
267 PTZ00188 adrenodoxin reductase 98.0 5.6E-06 1.2E-10 76.7 4.7 42 5-46 40-82 (506)
268 PF07992 Pyr_redox_2: Pyridine 98.0 5.4E-06 1.2E-10 68.8 4.3 31 6-36 1-31 (201)
269 TIGR02061 aprA adenosine phosp 98.0 8.1E-06 1.8E-10 78.9 4.8 56 233-288 127-190 (614)
270 PRK06567 putative bifunctional 98.0 8.4E-06 1.8E-10 81.1 4.9 38 5-42 384-421 (1028)
271 TIGR01317 GOGAT_sm_gam glutama 97.9 8.4E-06 1.8E-10 77.1 4.6 40 5-44 144-183 (485)
272 PF00070 Pyr_redox: Pyridine n 97.9 1.5E-05 3.2E-10 55.6 4.7 35 6-40 1-35 (80)
273 PRK12770 putative glutamate sy 97.9 1.1E-05 2.3E-10 73.3 5.0 41 4-44 18-58 (352)
274 PRK12771 putative glutamate sy 97.9 9.6E-06 2.1E-10 78.4 4.5 40 5-44 138-177 (564)
275 PRK06912 acoL dihydrolipoamide 97.9 1.1E-05 2.3E-10 76.1 4.6 56 233-290 212-269 (458)
276 PRK13800 putative oxidoreducta 97.8 1.7E-05 3.6E-10 80.7 4.9 35 4-38 13-47 (897)
277 COG4529 Uncharacterized protei 97.8 0.00024 5.1E-09 65.0 11.6 40 5-44 2-44 (474)
278 PF13434 K_oxygenase: L-lysine 97.8 4.9E-05 1.1E-09 68.4 7.0 34 4-37 2-36 (341)
279 KOG0399 Glutamate synthase [Am 97.8 1.7E-05 3.6E-10 78.3 4.1 40 5-44 1786-1825(2142)
280 PRK08255 salicylyl-CoA 5-hydro 97.8 1.9E-05 4.1E-10 78.9 4.4 33 6-38 2-36 (765)
281 PRK07845 flavoprotein disulfid 97.8 2.4E-05 5.3E-10 73.8 4.8 57 233-290 219-275 (466)
282 PRK13984 putative oxidoreducta 97.8 2.4E-05 5.3E-10 76.3 4.8 41 4-44 283-323 (604)
283 KOG1335 Dihydrolipoamide dehyd 97.8 2.6E-05 5.7E-10 68.7 4.2 42 4-45 39-80 (506)
284 PRK07846 mycothione reductase; 97.7 3.5E-05 7.6E-10 72.4 4.6 54 234-290 209-263 (451)
285 KOG2960 Protein involved in th 97.7 1.4E-05 3.1E-10 64.6 1.4 41 4-44 76-118 (328)
286 TIGR03452 mycothione_red mycot 97.7 4E-05 8.7E-10 72.0 4.5 54 234-290 212-266 (452)
287 COG0445 GidA Flavin-dependent 97.6 4.9E-05 1.1E-09 70.2 3.9 36 1-36 1-36 (621)
288 TIGR01350 lipoamide_DH dihydro 97.6 0.00084 1.8E-08 63.4 12.0 35 5-39 171-205 (461)
289 PRK05249 soluble pyridine nucl 97.6 0.00084 1.8E-08 63.4 11.9 35 5-39 176-210 (461)
290 COG0029 NadB Aspartate oxidase 97.6 8.6E-05 1.9E-09 67.9 4.5 34 6-40 9-42 (518)
291 PRK06416 dihydrolipoamide dehy 97.5 0.0012 2.5E-08 62.5 11.9 47 243-290 224-273 (462)
292 COG1206 Gid NAD(FAD)-utilizing 97.4 0.00017 3.7E-09 62.4 4.4 39 5-43 4-42 (439)
293 PRK09754 phenylpropionate diox 97.4 0.00024 5.1E-09 65.7 4.8 56 233-290 187-242 (396)
294 PRK07845 flavoprotein disulfid 97.3 0.0033 7.2E-08 59.4 12.0 34 6-39 179-212 (466)
295 KOG4716 Thioredoxin reductase 97.3 0.00026 5.7E-09 61.5 3.8 33 3-35 18-50 (503)
296 PRK13512 coenzyme A disulfide 97.3 0.0003 6.6E-09 65.9 4.4 53 233-290 190-242 (438)
297 KOG1800 Ferredoxin/adrenodoxin 97.2 0.00042 9.1E-09 61.3 4.7 43 4-46 20-64 (468)
298 KOG2311 NAD/FAD-utilizing prot 97.2 0.0004 8.7E-09 63.1 4.3 34 3-36 27-60 (679)
299 PTZ00318 NADH dehydrogenase-li 97.2 0.00043 9.2E-09 64.6 4.7 53 233-290 229-281 (424)
300 COG0446 HcaD Uncharacterized N 97.1 0.0005 1.1E-08 63.7 4.2 40 5-44 137-176 (415)
301 COG3486 IucD Lysine/ornithine 97.1 0.0038 8.1E-08 56.0 9.1 36 1-36 2-38 (436)
302 KOG0405 Pyridine nucleotide-di 96.9 0.001 2.2E-08 58.2 4.1 42 4-45 20-61 (478)
303 PF07156 Prenylcys_lyase: Pren 96.9 0.0036 7.8E-08 56.7 7.5 112 163-288 68-186 (368)
304 PRK04965 NADH:flavorubredoxin 96.9 0.0013 2.7E-08 60.5 4.7 56 233-290 184-240 (377)
305 TIGR03169 Nterm_to_SelD pyridi 96.7 0.0017 3.7E-08 59.3 4.4 52 233-290 192-244 (364)
306 PF01210 NAD_Gly3P_dh_N: NAD-d 96.7 0.0021 4.5E-08 51.1 3.8 32 6-37 1-32 (157)
307 COG1252 Ndh NADH dehydrogenase 96.6 0.0025 5.4E-08 58.1 4.6 54 232-291 209-264 (405)
308 KOG3855 Monooxygenase involved 96.6 0.0022 4.8E-08 57.4 4.1 40 4-43 36-81 (481)
309 PF03721 UDPG_MGDP_dh_N: UDP-g 96.5 0.0027 5.9E-08 51.9 3.9 32 6-37 2-33 (185)
310 PRK14989 nitrite reductase sub 96.4 0.0044 9.6E-08 62.6 4.9 58 234-291 189-247 (847)
311 PRK09754 phenylpropionate diox 96.3 0.0042 9.1E-08 57.4 4.3 39 5-43 145-183 (396)
312 PF02737 3HCDH_N: 3-hydroxyacy 96.3 0.0046 1E-07 50.3 4.0 31 6-36 1-31 (180)
313 KOG0404 Thioredoxin reductase 96.3 0.0032 7E-08 51.7 2.8 46 2-47 6-55 (322)
314 PRK02705 murD UDP-N-acetylmura 96.3 0.0046 9.9E-08 58.4 4.3 34 6-39 2-35 (459)
315 PF02558 ApbA: Ketopantoate re 96.2 0.0064 1.4E-07 47.9 4.2 30 7-36 1-30 (151)
316 PRK01438 murD UDP-N-acetylmura 96.2 0.0056 1.2E-07 58.1 4.3 34 5-38 17-50 (480)
317 TIGR03862 flavo_PP4765 unchara 96.1 0.017 3.6E-07 52.6 6.6 59 225-287 78-139 (376)
318 PRK07251 pyridine nucleotide-d 96.0 0.0083 1.8E-07 56.3 4.7 38 5-42 158-195 (438)
319 COG3634 AhpF Alkyl hydroperoxi 96.0 0.0046 1E-07 54.2 2.4 38 4-43 211-248 (520)
320 PRK05976 dihydrolipoamide dehy 96.0 0.0079 1.7E-07 57.0 4.3 36 5-40 181-216 (472)
321 PRK07530 3-hydroxybutyryl-CoA 96.0 0.01 2.2E-07 52.4 4.7 37 1-37 1-37 (292)
322 PRK06129 3-hydroxyacyl-CoA deh 95.9 0.0077 1.7E-07 53.6 3.7 32 6-37 4-35 (308)
323 PRK06249 2-dehydropantoate 2-r 95.8 0.012 2.6E-07 52.5 4.6 34 4-37 5-38 (313)
324 TIGR02053 MerA mercuric reduct 95.8 0.011 2.4E-07 55.8 4.3 37 5-41 167-203 (463)
325 PRK07819 3-hydroxybutyryl-CoA 95.8 0.012 2.6E-07 51.7 4.2 34 5-38 6-39 (286)
326 TIGR02374 nitri_red_nirB nitri 95.7 0.0099 2.2E-07 59.9 4.0 54 235-290 185-239 (785)
327 KOG3923 D-aspartate oxidase [A 95.7 0.012 2.6E-07 50.6 3.8 33 4-36 3-42 (342)
328 TIGR01421 gluta_reduc_1 glutat 95.7 0.013 2.8E-07 55.1 4.3 36 5-40 167-202 (450)
329 PRK06467 dihydrolipoamide dehy 95.6 0.013 2.9E-07 55.4 4.4 37 5-41 175-211 (471)
330 COG1249 Lpd Pyruvate/2-oxoglut 95.6 0.015 3.2E-07 54.4 4.4 36 6-41 175-210 (454)
331 PRK06912 acoL dihydrolipoamide 95.6 0.015 3.1E-07 55.0 4.5 37 5-41 171-207 (458)
332 PRK07846 mycothione reductase; 95.6 0.015 3.2E-07 54.8 4.4 36 5-40 167-202 (451)
333 PRK06115 dihydrolipoamide dehy 95.6 0.015 3.3E-07 55.0 4.5 37 5-41 175-211 (466)
334 PRK06370 mercuric reductase; V 95.6 0.016 3.5E-07 54.7 4.6 38 5-42 172-209 (463)
335 KOG2755 Oxidoreductase [Genera 95.6 0.0082 1.8E-07 50.7 2.2 50 7-56 2-53 (334)
336 COG0569 TrkA K+ transport syst 95.5 0.015 3.2E-07 49.2 3.8 32 6-37 2-33 (225)
337 PRK06130 3-hydroxybutyryl-CoA 95.5 0.018 3.9E-07 51.3 4.4 37 1-37 1-37 (311)
338 PRK13512 coenzyme A disulfide 95.5 0.016 3.4E-07 54.4 4.2 37 5-41 149-185 (438)
339 PRK08293 3-hydroxybutyryl-CoA 95.5 0.018 4E-07 50.7 4.3 33 5-37 4-36 (287)
340 PRK07818 dihydrolipoamide dehy 95.4 0.018 3.8E-07 54.6 4.4 36 6-41 174-209 (466)
341 TIGR03385 CoA_CoA_reduc CoA-di 95.4 0.018 3.8E-07 53.9 4.3 35 5-39 138-172 (427)
342 PRK07066 3-hydroxybutyryl-CoA 95.4 0.02 4.4E-07 50.9 4.5 33 5-37 8-40 (321)
343 PRK14618 NAD(P)H-dependent gly 95.4 0.021 4.7E-07 51.3 4.7 36 1-36 1-36 (328)
344 PRK11064 wecC UDP-N-acetyl-D-m 95.4 0.017 3.8E-07 53.6 4.2 36 1-37 1-36 (415)
345 PRK06292 dihydrolipoamide dehy 95.4 0.019 4.2E-07 54.2 4.6 37 5-41 170-206 (460)
346 PRK09260 3-hydroxybutyryl-CoA 95.4 0.016 3.4E-07 51.1 3.6 32 6-37 3-34 (288)
347 PLN02545 3-hydroxybutyryl-CoA 95.4 0.02 4.4E-07 50.6 4.3 37 1-37 1-37 (295)
348 PRK08229 2-dehydropantoate 2-r 95.3 0.021 4.6E-07 51.6 4.3 31 6-36 4-34 (341)
349 PRK06327 dihydrolipoamide dehy 95.2 0.024 5.2E-07 53.8 4.4 37 5-41 184-220 (475)
350 PF01262 AlaDh_PNT_C: Alanine 95.2 0.027 5.9E-07 45.3 4.1 32 5-36 21-52 (168)
351 TIGR03452 mycothione_red mycot 95.2 0.024 5.3E-07 53.4 4.3 37 5-41 170-206 (452)
352 PRK04148 hypothetical protein; 95.1 0.021 4.5E-07 43.6 3.0 33 5-38 18-50 (134)
353 PRK06522 2-dehydropantoate 2-r 95.1 0.026 5.5E-07 50.1 4.1 31 6-36 2-32 (304)
354 PRK05708 2-dehydropantoate 2-r 95.1 0.028 6E-07 50.0 4.2 32 5-36 3-34 (305)
355 TIGR02374 nitri_red_nirB nitri 95.0 0.027 5.8E-07 56.8 4.3 36 5-40 141-176 (785)
356 PRK14106 murD UDP-N-acetylmura 95.0 0.028 6.1E-07 52.9 4.3 33 5-37 6-38 (450)
357 COG1004 Ugd Predicted UDP-gluc 95.0 0.028 6E-07 50.6 3.8 32 6-37 2-33 (414)
358 PRK12921 2-dehydropantoate 2-r 94.9 0.029 6.2E-07 49.8 4.0 30 6-35 2-31 (305)
359 TIGR03140 AhpF alkyl hydropero 94.9 0.029 6.3E-07 53.8 4.1 35 5-39 353-387 (515)
360 PRK06116 glutathione reductase 94.9 0.098 2.1E-06 49.3 7.6 58 233-290 209-266 (450)
361 TIGR01816 sdhA_forward succina 94.9 0.087 1.9E-06 51.1 7.4 54 232-286 119-178 (565)
362 cd05292 LDH_2 A subgroup of L- 94.9 0.035 7.6E-07 49.4 4.3 32 6-37 2-35 (308)
363 PTZ00153 lipoamide dehydrogena 94.8 0.033 7.1E-07 54.7 4.4 36 6-41 314-349 (659)
364 PRK05808 3-hydroxybutyryl-CoA 94.8 0.032 7E-07 49.0 4.0 33 5-37 4-36 (282)
365 PRK06035 3-hydroxyacyl-CoA deh 94.8 0.029 6.4E-07 49.5 3.7 33 5-37 4-36 (291)
366 PTZ00058 glutathione reductase 94.8 0.033 7.2E-07 53.7 4.1 36 5-40 238-273 (561)
367 KOG2304 3-hydroxyacyl-CoA dehy 94.7 0.036 7.8E-07 45.7 3.6 38 1-38 8-45 (298)
368 PRK09564 coenzyme A disulfide 94.7 0.037 7.9E-07 52.0 4.3 37 5-41 150-186 (444)
369 TIGR03026 NDP-sugDHase nucleot 94.7 0.036 7.8E-07 51.5 4.0 33 6-38 2-34 (411)
370 PRK07531 bifunctional 3-hydrox 94.6 0.041 8.9E-07 52.4 4.4 37 1-37 1-37 (495)
371 PRK05675 sdhA succinate dehydr 94.6 0.12 2.5E-06 50.3 7.4 55 232-286 126-186 (570)
372 PRK04965 NADH:flavorubredoxin 94.5 0.15 3.2E-06 46.9 7.6 34 5-38 3-38 (377)
373 TIGR01763 MalateDH_bact malate 94.5 0.054 1.2E-06 48.1 4.4 32 5-36 2-34 (305)
374 TIGR01316 gltA glutamate synth 94.4 0.046 9.9E-07 51.5 4.1 34 5-38 273-306 (449)
375 PRK10262 thioredoxin reductase 94.4 0.047 1E-06 48.9 4.1 35 5-39 147-181 (321)
376 PRK15317 alkyl hydroperoxide r 94.3 0.046 1E-06 52.5 4.1 34 6-39 353-386 (517)
377 TIGR03143 AhpF_homolog putativ 94.3 0.047 1E-06 52.9 4.1 35 5-39 144-178 (555)
378 TIGR01470 cysG_Nterm siroheme 94.3 0.064 1.4E-06 44.6 4.2 33 5-37 10-42 (205)
379 TIGR01292 TRX_reduct thioredox 94.2 0.17 3.6E-06 44.6 7.2 54 233-289 58-112 (300)
380 PRK14619 NAD(P)H-dependent gly 94.2 0.067 1.4E-06 47.6 4.6 34 4-37 4-37 (308)
381 cd01080 NAD_bind_m-THF_DH_Cycl 94.2 0.072 1.6E-06 42.7 4.2 32 5-36 45-77 (168)
382 PLN02546 glutathione reductase 94.1 0.058 1.2E-06 52.1 4.2 37 5-41 253-289 (558)
383 PRK12831 putative oxidoreducta 94.1 0.058 1.3E-06 51.0 4.1 34 5-38 282-315 (464)
384 PF03446 NAD_binding_2: NAD bi 94.1 0.073 1.6E-06 42.5 4.1 32 5-36 2-33 (163)
385 COG0686 Ald Alanine dehydrogen 94.0 0.052 1.1E-06 47.1 3.3 42 5-46 169-218 (371)
386 TIGR00518 alaDH alanine dehydr 94.0 0.066 1.4E-06 48.9 4.2 32 5-36 168-199 (370)
387 KOG1336 Monodehydroascorbate/f 94.0 0.16 3.5E-06 46.8 6.5 59 232-290 255-314 (478)
388 TIGR02354 thiF_fam2 thiamine b 94.0 0.086 1.9E-06 43.7 4.4 33 4-36 21-54 (200)
389 COG0771 MurD UDP-N-acetylmuram 94.0 0.068 1.5E-06 49.6 4.1 35 5-39 8-42 (448)
390 PRK12770 putative glutamate sy 93.9 0.064 1.4E-06 48.7 3.9 33 6-38 174-207 (352)
391 PRK00094 gpsA NAD(P)H-dependen 93.9 0.076 1.7E-06 47.6 4.3 32 6-37 3-34 (325)
392 PTZ00082 L-lactate dehydrogena 93.8 0.098 2.1E-06 46.8 4.8 36 3-38 5-41 (321)
393 KOG3851 Sulfide:quinone oxidor 93.7 0.064 1.4E-06 46.8 3.3 35 3-37 38-74 (446)
394 PLN02353 probable UDP-glucose 93.7 0.076 1.6E-06 50.0 4.1 32 6-37 3-36 (473)
395 PRK07417 arogenate dehydrogena 93.7 0.076 1.7E-06 46.5 3.9 32 6-37 2-33 (279)
396 PRK01710 murD UDP-N-acetylmura 93.7 0.081 1.8E-06 49.9 4.2 32 6-37 16-47 (458)
397 PRK14620 NAD(P)H-dependent gly 93.7 0.084 1.8E-06 47.4 4.2 31 6-36 2-32 (326)
398 PRK06719 precorrin-2 dehydroge 93.7 0.1 2.3E-06 41.3 4.2 31 5-35 14-44 (157)
399 TIGR01424 gluta_reduc_2 glutat 93.7 0.24 5.2E-06 46.6 7.4 41 4-45 2-42 (446)
400 PLN02507 glutathione reductase 93.6 0.25 5.5E-06 47.2 7.5 42 4-45 25-75 (499)
401 PRK06718 precorrin-2 dehydroge 93.6 0.1 2.3E-06 43.2 4.3 32 5-36 11-42 (202)
402 PRK09424 pntA NAD(P) transhydr 93.5 0.079 1.7E-06 50.2 3.8 33 5-37 166-198 (509)
403 PF13241 NAD_binding_7: Putati 93.5 0.074 1.6E-06 38.9 2.9 33 5-37 8-40 (103)
404 PRK04690 murD UDP-N-acetylmura 93.4 0.09 2E-06 49.8 4.1 33 6-38 10-42 (468)
405 PRK14694 putative mercuric red 93.4 0.32 6.9E-06 46.1 7.7 42 3-45 5-46 (468)
406 PRK08010 pyridine nucleotide-d 93.4 0.27 5.9E-06 46.1 7.2 44 1-45 1-45 (441)
407 TIGR02279 PaaC-3OHAcCoADH 3-hy 93.3 0.087 1.9E-06 50.1 3.7 33 5-37 6-38 (503)
408 PF00056 Ldh_1_N: lactate/mala 93.3 0.14 3E-06 39.8 4.2 32 6-37 2-36 (141)
409 PRK08268 3-hydroxy-acyl-CoA de 93.2 0.11 2.3E-06 49.7 4.2 34 5-38 8-41 (507)
410 COG1748 LYS9 Saccharopine dehy 93.2 0.12 2.6E-06 47.1 4.3 43 6-48 3-54 (389)
411 PF02254 TrkA_N: TrkA-N domain 93.2 0.14 3E-06 38.1 4.1 31 7-37 1-31 (116)
412 PRK03803 murD UDP-N-acetylmura 93.1 0.12 2.6E-06 48.7 4.4 37 1-37 3-39 (448)
413 cd05291 HicDH_like L-2-hydroxy 93.1 0.12 2.6E-06 45.9 4.3 32 6-37 2-35 (306)
414 TIGR01423 trypano_reduc trypan 93.1 0.35 7.6E-06 46.0 7.6 44 3-46 2-54 (486)
415 PRK15057 UDP-glucose 6-dehydro 93.1 0.11 2.4E-06 47.8 4.0 31 6-37 2-32 (388)
416 PRK03369 murD UDP-N-acetylmura 93.1 0.11 2.3E-06 49.6 4.0 32 5-36 13-44 (488)
417 PTZ00318 NADH dehydrogenase-li 93.1 0.12 2.7E-06 48.2 4.4 36 6-41 175-224 (424)
418 PF01488 Shikimate_DH: Shikima 93.1 0.14 3E-06 39.4 4.0 32 5-36 13-45 (135)
419 PRK00421 murC UDP-N-acetylmura 93.0 0.11 2.5E-06 49.0 4.1 34 5-38 8-42 (461)
420 PRK04308 murD UDP-N-acetylmura 93.0 0.13 2.8E-06 48.4 4.5 35 5-39 6-40 (445)
421 PRK02472 murD UDP-N-acetylmura 93.0 0.11 2.4E-06 48.8 4.1 33 5-37 6-38 (447)
422 PRK14727 putative mercuric red 93.0 0.36 7.9E-06 45.9 7.5 56 233-290 229-284 (479)
423 cd01075 NAD_bind_Leu_Phe_Val_D 92.9 0.15 3.3E-06 42.2 4.3 32 5-36 29-60 (200)
424 COG1893 ApbA Ketopantoate redu 92.9 0.12 2.7E-06 45.8 4.0 32 6-37 2-33 (307)
425 TIGR01915 npdG NADPH-dependent 92.9 0.14 3E-06 43.1 4.1 31 6-36 2-33 (219)
426 PRK06223 malate dehydrogenase; 92.9 0.15 3.3E-06 45.3 4.5 33 5-37 3-36 (307)
427 COG3634 AhpF Alkyl hydroperoxi 92.8 0.087 1.9E-06 46.6 2.7 32 5-36 355-386 (520)
428 PF13478 XdhC_C: XdhC Rossmann 92.8 0.13 2.9E-06 39.6 3.5 32 7-38 1-32 (136)
429 PRK15116 sulfur acceptor prote 92.8 0.15 3.2E-06 44.1 4.2 34 4-37 30-64 (268)
430 PRK11749 dihydropyrimidine deh 92.8 0.13 2.8E-06 48.5 4.2 34 5-38 274-308 (457)
431 cd00401 AdoHcyase S-adenosyl-L 92.8 0.14 3E-06 47.3 4.1 33 5-37 203-235 (413)
432 PRK00066 ldh L-lactate dehydro 92.7 0.19 4.1E-06 44.9 4.9 34 4-37 6-41 (315)
433 TIGR01505 tartro_sem_red 2-hyd 92.7 0.12 2.6E-06 45.6 3.6 32 6-37 1-32 (291)
434 PF00899 ThiF: ThiF family; I 92.7 0.13 2.9E-06 39.5 3.5 32 5-36 3-35 (135)
435 PRK00683 murD UDP-N-acetylmura 92.6 0.14 3E-06 47.7 4.1 36 1-37 1-36 (418)
436 COG1250 FadB 3-hydroxyacyl-CoA 92.5 0.15 3.2E-06 44.9 3.8 32 5-36 4-35 (307)
437 cd01339 LDH-like_MDH L-lactate 92.5 0.14 3.1E-06 45.3 3.8 31 7-37 1-32 (300)
438 PRK11730 fadB multifunctional 92.5 0.12 2.7E-06 51.5 3.7 33 5-37 314-346 (715)
439 PRK01368 murD UDP-N-acetylmura 92.5 0.16 3.5E-06 47.8 4.4 31 5-36 7-37 (454)
440 PRK13748 putative mercuric red 92.5 0.45 9.7E-06 46.2 7.5 42 3-45 97-138 (561)
441 cd05191 NAD_bind_amino_acid_DH 92.4 0.23 5.1E-06 34.8 4.1 31 5-35 24-55 (86)
442 cd05293 LDH_1 A subgroup of L- 92.3 0.22 4.7E-06 44.4 4.7 34 4-37 3-38 (312)
443 PRK11559 garR tartronate semia 92.3 0.18 3.8E-06 44.6 4.1 32 6-37 4-35 (296)
444 PRK11199 tyrA bifunctional cho 92.3 0.2 4.3E-06 45.9 4.5 33 5-37 99-132 (374)
445 TIGR02437 FadB fatty oxidation 92.2 0.16 3.5E-06 50.6 4.1 33 5-37 314-346 (714)
446 TIGR03385 CoA_CoA_reduc CoA-di 92.2 0.49 1.1E-05 44.2 7.2 55 233-290 180-234 (427)
447 PRK14989 nitrite reductase sub 92.1 0.59 1.3E-05 47.6 8.0 39 1-40 1-43 (847)
448 PRK14573 bifunctional D-alanyl 92.1 0.16 3.5E-06 51.5 4.2 38 1-38 1-39 (809)
449 PRK08306 dipicolinate synthase 92.0 0.2 4.4E-06 44.2 4.2 33 5-37 153-185 (296)
450 PRK12549 shikimate 5-dehydroge 92.0 0.22 4.7E-06 43.8 4.2 32 5-36 128-160 (284)
451 TIGR00561 pntA NAD(P) transhyd 92.0 0.17 3.7E-06 47.8 3.8 33 5-37 165-197 (511)
452 PRK08849 2-octaprenyl-3-methyl 91.9 0.58 1.3E-05 43.0 7.3 36 1-37 1-36 (384)
453 PTZ00052 thioredoxin reductase 91.9 0.61 1.3E-05 44.6 7.6 45 1-45 2-54 (499)
454 PRK12778 putative bifunctional 91.9 0.17 3.8E-06 50.9 4.0 34 5-38 571-605 (752)
455 PRK02006 murD UDP-N-acetylmura 91.8 0.19 4E-06 48.1 4.0 32 6-37 9-40 (498)
456 PRK07688 thiamine/molybdopteri 91.8 0.24 5.2E-06 44.6 4.5 32 5-36 25-57 (339)
457 TIGR02964 xanthine_xdhC xanthi 91.8 0.28 6.2E-06 42.0 4.7 35 4-38 100-134 (246)
458 COG2085 Predicted dinucleotide 91.8 0.21 4.6E-06 41.1 3.6 30 6-35 3-32 (211)
459 PRK15461 NADH-dependent gamma- 91.8 0.2 4.3E-06 44.3 3.8 32 6-37 3-34 (296)
460 COG2084 MmsB 3-hydroxyisobutyr 91.7 0.23 5E-06 43.3 4.1 34 6-39 2-35 (286)
461 cd01487 E1_ThiF_like E1_ThiF_l 91.6 0.28 6.1E-06 39.6 4.2 31 6-36 1-32 (174)
462 TIGR02441 fa_ox_alpha_mit fatt 91.6 0.18 4E-06 50.4 3.7 33 5-37 336-368 (737)
463 PTZ00142 6-phosphogluconate de 91.5 0.2 4.3E-06 47.2 3.7 34 5-38 2-35 (470)
464 PLN02172 flavin-containing mon 91.5 0.56 1.2E-05 44.3 6.8 54 232-287 111-171 (461)
465 cd01483 E1_enzyme_family Super 91.4 0.32 7E-06 37.8 4.3 31 6-36 1-32 (143)
466 PRK12475 thiamine/molybdopteri 91.4 0.28 6.1E-06 44.2 4.4 32 5-36 25-57 (338)
467 PF10727 Rossmann-like: Rossma 91.4 0.17 3.7E-06 38.4 2.6 33 4-36 10-42 (127)
468 PRK00141 murD UDP-N-acetylmura 91.4 0.24 5.3E-06 46.9 4.2 32 5-36 16-47 (473)
469 PRK08644 thiamine biosynthesis 91.2 0.33 7.2E-06 40.6 4.4 33 4-36 28-61 (212)
470 cd05311 NAD_bind_2_malic_enz N 91.1 0.29 6.4E-06 41.4 4.0 32 5-36 26-60 (226)
471 TIGR02853 spore_dpaA dipicolin 91.0 0.26 5.6E-06 43.3 3.8 33 5-37 152-184 (287)
472 PRK05442 malate dehydrogenase; 91.0 0.32 7E-06 43.5 4.4 37 1-37 1-45 (326)
473 TIGR02440 FadJ fatty oxidation 91.0 0.23 5E-06 49.4 3.8 33 5-37 305-338 (699)
474 PRK03806 murD UDP-N-acetylmura 91.0 0.32 6.8E-06 45.7 4.5 33 5-37 7-39 (438)
475 PRK01390 murD UDP-N-acetylmura 90.9 0.24 5.3E-06 46.8 3.8 32 5-36 10-41 (460)
476 PTZ00117 malate dehydrogenase; 90.9 0.35 7.7E-06 43.2 4.6 34 4-37 5-39 (319)
477 KOG1335 Dihydrolipoamide dehyd 90.8 0.15 3.2E-06 45.8 2.0 39 6-44 213-251 (506)
478 PF03807 F420_oxidored: NADP o 90.8 0.38 8.3E-06 34.3 3.9 31 6-36 1-35 (96)
479 PRK11154 fadJ multifunctional 90.8 0.24 5.2E-06 49.4 3.7 33 5-37 310-343 (708)
480 TIGR02355 moeB molybdopterin s 90.7 0.38 8.2E-06 41.1 4.4 33 4-36 24-57 (240)
481 cd05290 LDH_3 A subgroup of L- 90.6 0.37 8E-06 42.8 4.4 32 6-37 1-34 (307)
482 TIGR00936 ahcY adenosylhomocys 90.6 0.33 7.2E-06 44.7 4.2 33 5-37 196-228 (406)
483 PRK09496 trkA potassium transp 90.5 0.28 6.1E-06 46.2 3.8 32 6-37 2-33 (453)
484 PRK07502 cyclohexadienyl dehyd 90.5 0.36 7.9E-06 42.9 4.3 33 5-37 7-41 (307)
485 PRK05690 molybdopterin biosynt 90.4 0.41 9E-06 41.0 4.4 33 4-36 32-65 (245)
486 PRK12779 putative bifunctional 90.4 0.31 6.7E-06 50.2 4.2 33 6-38 449-481 (944)
487 TIGR01438 TGR thioredoxin and 90.4 0.99 2.2E-05 43.0 7.3 42 4-45 2-51 (484)
488 TIGR02356 adenyl_thiF thiazole 90.4 0.45 9.8E-06 39.5 4.5 33 4-36 21-54 (202)
489 TIGR00872 gnd_rel 6-phosphoglu 90.3 0.35 7.5E-06 42.8 4.0 32 6-37 2-33 (298)
490 PRK08328 hypothetical protein; 90.3 0.4 8.8E-06 40.7 4.2 32 5-36 28-60 (231)
491 PLN02602 lactate dehydrogenase 90.3 0.47 1E-05 42.9 4.8 33 5-37 38-72 (350)
492 PRK06849 hypothetical protein; 90.2 0.47 1E-05 43.8 4.9 38 1-38 1-39 (389)
493 cd01065 NAD_bind_Shikimate_DH 90.2 0.45 9.7E-06 37.4 4.2 32 5-36 20-52 (155)
494 cd01078 NAD_bind_H4MPT_DH NADP 90.2 0.49 1.1E-05 38.9 4.5 32 5-36 29-61 (194)
495 COG0492 TrxB Thioredoxin reduc 90.2 1 2.2E-05 40.0 6.7 55 232-289 61-115 (305)
496 PRK03815 murD UDP-N-acetylmura 90.1 0.33 7.2E-06 44.9 3.8 30 6-36 2-31 (401)
497 TIGR00507 aroE shikimate 5-deh 90.1 0.41 8.8E-06 41.7 4.2 32 5-36 118-149 (270)
498 PF00670 AdoHcyase_NAD: S-aden 90.0 0.36 7.8E-06 38.2 3.3 33 5-37 24-56 (162)
499 PRK10669 putative cation:proto 89.8 0.34 7.3E-06 47.0 3.8 33 5-37 418-450 (558)
500 PRK11880 pyrroline-5-carboxyla 89.8 0.41 8.8E-06 41.6 3.9 33 5-37 3-38 (267)
No 1
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=100.00 E-value=3.6e-55 Score=395.13 Aligned_cols=336 Identities=61% Similarity=1.042 Sum_probs=285.5
Q ss_pred CCCcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCcccchHHHHHhccCCCC-CCCCCCCCCcceeccCcch
Q 019351 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQ-PPAHLGSSRDYNVDMIPKF 79 (342)
Q Consensus 1 m~~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~ 79 (342)
|+++|||||+|+|+..+..|..|+++|++|+++|+++++||.++++++.++...|....+ .+..+|.++.|++|+.|++
T Consensus 1 m~~~yDviI~GTGl~esila~als~~GkkVLhiD~n~yYGg~~asl~l~~l~~~~~~~~~~~~~~~~~sR~ynIDL~PKl 80 (438)
T PF00996_consen 1 MDEEYDVIILGTGLTESILAAALSRSGKKVLHIDRNDYYGGEWASLNLDQLYEWFRPKQWTPPESLGRSRDYNIDLIPKL 80 (438)
T ss_dssp --SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSCGGG-EE-HHHHHHHHCCTCCHHHHHHHTGGGC-EESS--B
T ss_pred CCccceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcCCchhcccHHHHHHHhhccccccccccccccceeEecchHh
Confidence 899999999999999999999999999999999999999999999999999888875422 2355688899999999999
Q ss_pred hccccHHHHHHhhcCCcceeeEEEcCceEEEeCCeEEecCCCcHHHhcCCCCChhhHHHHHHHHHHHhhcCCCCcccccc
Q 019351 80 IIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEG 159 (342)
Q Consensus 80 ~~~~~~l~~~l~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~ 159 (342)
++++|+|+++|+++++.+|+||+.+++.|+|.+++++++|.++.+.|++.++++++|+.+++|+.++..+.+..+..++.
T Consensus 81 l~a~g~LV~lLi~S~V~rYLEFk~V~~~~v~~~~~l~kVP~sr~dvf~s~~lsl~eKR~lmkFl~~v~~~~~~~~~~~~~ 160 (438)
T PF00996_consen 81 LYARGPLVKLLISSGVTRYLEFKAVDGSYVYKNGKLHKVPCSREDVFKSKLLSLFEKRRLMKFLKFVANYEEDDPSTHKG 160 (438)
T ss_dssp EETTSHHHHHHHHCTGGGGSEEEEESEEEEEETTEEEE--SSHHHHHC-TTS-HHHHHHHHHHHHHHHHGCTTBGGGSTT
T ss_pred hhccCHHHHHHHhCCcccceEEEEcceeEEEeCCEEeeCCCCHHHhhcCCCccHHHHHHHHHHHHHHhhcccCCcchhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998777777777
Q ss_pred cCCCCCcHHHHHHHcCCChhHHHHHHhhhhcccCCCCCCCchHHHHHHHHHHHHhhccccCCCceEEeCCCCChHHHHHH
Q 019351 160 MDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFA 239 (342)
Q Consensus 160 ~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~gG~~~l~~~l~ 239 (342)
.+....++.+++++++++++.++++.+.+++...+.+...|+..++.++..|+.|+++| |.+||+||.+|.++|+++++
T Consensus 161 ~~~~~~~~~e~~~~f~L~~~~~~~i~haiaL~~~~~~~~~p~~~~l~ri~~yl~Slgry-G~sPfLyP~YG~GELpQ~Fc 239 (438)
T PF00996_consen 161 LDPEKKTFQELLKKFGLSENLIDFIGHAIALSLDDSYLTEPAREGLERIKLYLSSLGRY-GKSPFLYPLYGLGELPQAFC 239 (438)
T ss_dssp G-TTTSBHHHHHHHTTS-HHHHHHHHHHTS-SSSSGGGGSBSHHHHHHHHHHHHHHCCC-SSSSEEEETT-TTHHHHHHH
T ss_pred cccccccHHHHHHhcCCCHHHHHHHHHhhhhccCcccccccHHHHHHHHHHHHHHHhcc-CCCCEEEEccCCccHHHHHH
Confidence 77788999999999999999999999999998877777778899999999999999999 98999999999999999999
Q ss_pred HHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCcEEEcCEEEECCCCCCccccccceeEEEEEEecCCCCCCCCCCeEE
Q 019351 240 RLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVARAIAIMSHPIPNTNDSHSVQ 319 (342)
Q Consensus 240 ~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~ 319 (342)
|.++..|+.+.++++|.+|..++++++.+|..+|++++|++||..++|.|+.+....++.|+++|+++|++++.+..+.+
T Consensus 240 Rl~AV~GG~Y~L~~~i~~i~~~~~g~~~gV~s~ge~v~~k~vI~dpsy~p~~v~~~~~V~RaI~Il~~pi~~t~~~~s~~ 319 (438)
T PF00996_consen 240 RLSAVYGGTYMLNRPIDEIVVDEDGKVIGVKSEGEVVKAKKVIGDPSYLPEKVKKTGQVSRAICILDHPIPNTEDASSVQ 319 (438)
T ss_dssp HHHHHTT-EEESS--EEEEEEETTTEEEEEEETTEEEEESEEEEEGGGBGCGEEEEEEEEEEEEEESS-STTSTT-SSEE
T ss_pred HHhhhcCcEEEeCCccceeeeecCCeEEEEecCCEEEEcCEEEECCccCcccccccceEEEEEEEEcCCCCCCCCCceEE
Confidence 99999999999999999998865788888988999999999999999999777666789999999999999988877888
Q ss_pred EEecCCCCCCcCceEEee
Q 019351 320 VILPQKQLGRRSDIQKPN 337 (342)
Q Consensus 320 ~~~p~~~~~~~~~~~~~~ 337 (342)
.++|+.+.+|+++||+--
T Consensus 320 IiiP~~~~~~~~dIyv~~ 337 (438)
T PF00996_consen 320 IIIPQSQVGRKSDIYVLQ 337 (438)
T ss_dssp EEE-GGGCTSSS-EEEEE
T ss_pred EecCCcccCCCCCeEEEE
Confidence 999999999999999853
No 2
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=100.00 E-value=4.1e-53 Score=387.26 Aligned_cols=338 Identities=67% Similarity=1.151 Sum_probs=306.7
Q ss_pred CCCcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCcccchHHHHHhccCCCCCCCCCCCCCcceeccCcchh
Q 019351 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFI 80 (342)
Q Consensus 1 m~~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 80 (342)
|+++|||||||+|++|+++|..|+++|++|+++|+++++||+++|++..+++..|..+...|..+|.++.|++|+.|+++
T Consensus 1 m~~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG~~as~~l~~l~~~f~~~~~~~~~~~~~r~~~iDL~Pk~l 80 (443)
T PTZ00363 1 MDETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGESASLNLTQLYKKFKPGETPPESLGRNRDWNVDLIPKFI 80 (443)
T ss_pred CCCcceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCcccccccHHHHHHhhcccCCCchhcccccccccccCCeee
Confidence 88899999999999999999999999999999999999999999999999888887766677888999999999999999
Q ss_pred ccccHHHHHHhhcCCcceeeEEEcCceEEE-eCCeEEecCCCcHHHhcCCCCChhhHHHHHHHHHHHhhcCCCCcccccc
Q 019351 81 IANGALVRVLIHTDVTKYLYFKAVDGSFVY-NKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEG 159 (342)
Q Consensus 81 ~~~~~l~~~l~~~~~~~~l~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~ 159 (342)
++.+.++++|..+++.+|++|+.+++.+++ .+|+++++|.++.+.|++.++++++|+.+++|+.++.++....++.+..
T Consensus 81 ~~~G~lv~lL~~s~v~ryleF~~l~g~~v~~~~g~~~~vP~s~~~~~~s~ll~l~eKr~l~kfl~~v~~~~~~~~~~~~~ 160 (443)
T PTZ00363 81 MASGELVKILLHTDVTRYLEFKVIDGSYVYQKEGKIHKVPATDMEALSSPLMGFFEKNRCKNFLQYVSNYDENDPETHKG 160 (443)
T ss_pred ecCChHHHHHhhcCccceeeeEEeceEEEEecCCeEEECCCCHHHHhhCCCcchhhHHHHHHHHHHHHhhccCChhhhcc
Confidence 999999999999999999999999999998 7999999999999999999999999999999999998887655555555
Q ss_pred cCCCCCcHHHHHHHcCCChhHHHHHHhhhhcccCCCCCCCchHHHHHHHHHHHHhhccccCCCceEEeCCCCChHHHHHH
Q 019351 160 MDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFA 239 (342)
Q Consensus 160 ~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~gG~~~l~~~l~ 239 (342)
.+++..|+.+|++++++++..++++.+++++...+.+...|+..++.++..|..+++.| |.+++.||.||+++++++|+
T Consensus 161 ~~~d~~T~~d~L~~~~ls~~~~d~i~~~ial~~~~~~~~~pa~~tl~ri~~y~~S~~~~-g~~p~~yp~gG~g~L~qal~ 239 (443)
T PTZ00363 161 LNLKTMTMAQLYKKFGLEDNTIDFVGHAVALYTNDDYLNKPAIETVMRIKLYMDSLSRY-GKSPFIYPLYGLGGLPQAFS 239 (443)
T ss_pred cCcccCCHHHHHHHhCCCHHHHHHHHHHHHhhcccccccCCHHHHHHHHHHHHHHHhhc-cCCcceeeCCCHHHHHHHHH
Confidence 55678999999999999999999999888887656666778889999999999999998 77889999999999999999
Q ss_pred HHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCcEEEcCEEEECCCCCCccccccceeEEEEEEecCCCCCCCCCCeE
Q 019351 240 RLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLPNKVRKVGRVARAIAIMSHPIPNTNDSHSV 318 (342)
Q Consensus 240 ~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~-~g~~~~a~~vI~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~ 318 (342)
+.++..|++|+++++|++|..++++++++|++ +|++++|++||+.++|+|+.++..+++.|+++|+++|++++.+..+.
T Consensus 240 r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~Ge~i~a~~VV~~~s~~p~~~~~~~~v~R~i~i~~~pi~~~~~~~~~ 319 (443)
T PTZ00363 240 RLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEGGEVAKCKLVICDPSYFPDKVKKVGKVIRCICILNHPIPNTNNANSC 319 (443)
T ss_pred HHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEECCCcEEECCEEEECccccccccccccEEEEEEEEEcccccccCcCccE
Confidence 99999999999999999998874467777877 78899999999999999987766778999999999999998887788
Q ss_pred EEEecCCCCCCcCceEEeeCc
Q 019351 319 QVILPQKQLGRRSDIQKPNGS 339 (342)
Q Consensus 319 ~~~~p~~~~~~~~~~~~~~~~ 339 (342)
+.++|+++.+|+++||+---|
T Consensus 320 ~i~~P~~~~~~~~~i~v~~~s 340 (443)
T PTZ00363 320 QIIIPQKQLGRKNDIYIMLVS 340 (443)
T ss_pred EEEECCcccCCCCCEEEEEec
Confidence 899999999999999975433
No 3
>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.7e-51 Score=352.20 Aligned_cols=338 Identities=67% Similarity=1.115 Sum_probs=319.1
Q ss_pred CCCcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCcccchHHHHHhccCC-CCCCCCCCCCCcceeccCcch
Q 019351 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGN-EQPPAHLGSSRDYNVDMIPKF 79 (342)
Q Consensus 1 m~~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~ 79 (342)
|+++|||+|+|+|+..+..+..|+..|.+|+++|+|+++||..+|.+..+++..|+.+ +.+|...|..+.|++|+.|++
T Consensus 1 mdeeyDvivlGTgl~ecilS~~Ls~~gkkVLhiDrN~yYG~~sasltl~ql~~~f~~~~~~~~~~~~~~rd~nvDLiPK~ 80 (440)
T KOG1439|consen 1 MDEEYDVIVLGTGLTECILSGALSVDGKKVLHIDRNDYYGGESASLTLEQLYKKFKKVSEKPPEKLGRDRDWNVDLIPKF 80 (440)
T ss_pred CCCceeEEEEcCCchhheeeeeeeecCcEEEEEeCCCCCCccccceeHHHHHHHhccccccCccccccccccchhhchHh
Confidence 8888999999999999999999999999999999999999999999999999999855 566778899999999999999
Q ss_pred hccccHHHHHHhhcCCcceeeEEEcCceEEEeCCeEEecCCCcHHHhcCCCCChhhHHHHHHHHHHHhhcCCCCcccccc
Q 019351 80 IIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEG 159 (342)
Q Consensus 80 ~~~~~~l~~~l~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~ 159 (342)
++.++.++++|+++++.+||+|+.++++++|.+|+++++|.++.+.+.+.++++++|+.+++|+.++..+.+..++.+..
T Consensus 81 lmAn~~Lvk~Li~T~V~~YL~fk~i~gsfv~~~~k~~KVP~t~~Ea~~s~lmgl~eKrr~~kFl~~V~n~~e~~~~~~~~ 160 (440)
T KOG1439|consen 81 LMANGELVKILIHTGVTRYLEFKSISGSFVYKKGKIYKVPATEAEALTSPLMGLFEKRRVMKFLKFVLNYDEEDPKTWQG 160 (440)
T ss_pred hhccchHHHHHHHhchhhheEEEeecceEEEECCeEEECCCCHHHHhcCCccchhHHHHHHHHHHHHhhhhhhccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888888888
Q ss_pred cCCCCCcHHHHHHHcCCChhHHHHHHhhhhcccCCCCCCCchHHHHHHHHHHHHhhccccCCCceEEeCCCCChHHHHHH
Q 019351 160 MDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFA 239 (342)
Q Consensus 160 ~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~gG~~~l~~~l~ 239 (342)
++..+.++.+++.++++..+.+++..+.++++..+.+.+.|+..++.++..|.+|++.| |.++++||.+|.++|+++++
T Consensus 161 ~~~~k~tm~~~~~~~~l~~~~~~f~gh~~al~~dd~~ld~p~~~~~~ri~~Y~~S~~~y-g~~~ylyP~yGlgEL~QgFa 239 (440)
T KOG1439|consen 161 YDLSKDTMREFLGKFGLLEGTIDFIGHAIALLCDDSYLDQPAKETLERILLYVRSFARY-GKSPYLYPLYGLGELPQGFA 239 (440)
T ss_pred cccccchHHHHHHHhcccccceeeeeeeeEEEecchhccCccHHHHHHHHHHHHHHhhc-CCCcceecccCcchhhHHHH
Confidence 77777899999999999999999999999998889999999999999999999999999 88889999999999999999
Q ss_pred HHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCcEEEcCEEEECCCCCCccccccceeEEEEEEecCCCCCCCCCCeEE
Q 019351 240 RLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVARAIAIMSHPIPNTNDSHSVQ 319 (342)
Q Consensus 240 ~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~ 319 (342)
|.++..|+++.+|.++.+|...+++++.++...++...++++|+-++|.|+.+++.+++.|.+||+.+|.+.+++.++.+
T Consensus 240 RlsAvyGgTYMLn~pi~ei~~~~~gk~igvk~~~~v~~~k~vi~dpSY~~~~~k~vg~viR~iCIl~hpi~~t~~~~S~q 319 (440)
T KOG1439|consen 240 RLSAVYGGTYMLNKPIDEINETKNGKVIGVKSGGEVAKCKKVICDPSYFPQKVKKVGQVIRAICILSHPIPNTNDAESAQ 319 (440)
T ss_pred HHhhccCceeecCCceeeeeccCCccEEEEecCCceeecceEEecCccchHHHHhhhheeeeeEEecCCcCcCCccceee
Confidence 99999999999999999999854788888888888999999999999999888888899999999999999999999999
Q ss_pred EEecCCCCCCcCceEEeeCc
Q 019351 320 VILPQKQLGRRSDIQKPNGS 339 (342)
Q Consensus 320 ~~~p~~~~~~~~~~~~~~~~ 339 (342)
.++|+.+.+|++|||+.--|
T Consensus 320 iiipq~q~~rksdi~v~~~s 339 (440)
T KOG1439|consen 320 IIIPQFQVGRKSDIYVFGLS 339 (440)
T ss_pred EEechhhhCCcccEEEEEec
Confidence 99999999999999986544
No 4
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-42 Score=294.56 Aligned_cols=328 Identities=48% Similarity=0.801 Sum_probs=287.3
Q ss_pred CCCc--ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCcccchHHHHHhccCCCCCCCCCCCCCcceeccCcc
Q 019351 1 MDEE--YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPK 78 (342)
Q Consensus 1 m~~~--~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 78 (342)
|++. |||+|+|+|+..+..+..|+..|.+|+++|+++++|+..++.+..++...|...+..|...+..+.|++|+.|+
T Consensus 1 Md~~~~yDvii~GTgl~esils~~Ls~~~k~VlhiD~Nd~YG~~~asltl~ql~~~~~~~~~~p~k~~~drd~~iDL~PK 80 (434)
T COG5044 1 MDEETLYDVIILGTGLRESILSAALSWDGKNVLHIDKNDYYGSTSASLTLTQLEKYFDECEKRPSKGGGDRDLNIDLIPK 80 (434)
T ss_pred CCccccccEEEecccHHHHHHHHHhhhcCceEEEEeCCCccCccccceeHHHHHHHhhhhhccccccccccccchhhchh
Confidence 6654 99999999999999999999999999999999999999999999988888877666777788889999999999
Q ss_pred hhccccHHHHHHhhcCCcceeeEEEcCceEEEeCCeEEecCCCcHHHhcCCCCChhhHHHHHHHHHHHhhcCCCCccccc
Q 019351 79 FIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHE 158 (342)
Q Consensus 79 ~~~~~~~l~~~l~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~ 158 (342)
+++.++.++++|++.++.+|++|+++.+++.|.+++++++|.++.+.+.+.++++++|+.+++|++++..+.+ ....++
T Consensus 81 ~l~A~s~l~~iLi~t~v~~YLefk~i~~~~~~~~~k~~kVP~ne~ei~~s~~lsL~eKr~vmrFl~~V~n~~~-~~~~~~ 159 (434)
T COG5044 81 FLFANSELLKILIETGVTEYLEFKQISGSFLYRPGKIYKVPYNEAEIFTSPLLSLFEKRRVMRFLKWVSNYAE-QKSTLQ 159 (434)
T ss_pred hhcccchHHHHHHHhChHhheeeeeccccEEecCCcEEECCccHHhhhcCCCcchhhHHHHHHHHHHHHhHHh-hhhhch
Confidence 9999999999999999999999999999999999999999999999999999999999999999999988875 333333
Q ss_pred ccCCCCCcHHHHHHHcCCChhHHHHHHhhhhcccCCCCCCCchHHHHHHHHHHHHhhccccCCCceEEeCCCCChHHHHH
Q 019351 159 GMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAF 238 (342)
Q Consensus 159 ~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~gG~~~l~~~l 238 (342)
.+..++.+.....+.++++....+++.+.++++.+ .+-|++.+++++..|++|++.| |.+|++||++|.+++++++
T Consensus 160 ~~~e~k~~~~~~~ekf~L~~~~~e~i~~~i~l~ld---l~~p~re~~erIl~Y~~Sf~~y-g~~pyLyp~YGl~El~QGF 235 (434)
T COG5044 160 ELYESKDTMEFLFEKFGLSGATEEFIGHGIALSLD---LDIPAREALERILRYMRSFGDY-GKSPYLYPRYGLGELSQGF 235 (434)
T ss_pred hhhhcccHHHHHHHHHccCcchhhhhhhhhhhhcc---ccCCchHHHHHHHHHHHhhccc-CCCcceeeccCchhhhHHH
Confidence 33222334444567899999999999998887654 4568899999999999999999 9999999999999999999
Q ss_pred HHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCcEEEcCEEEECCCCCCccccccc---eeEEEEEEec-CCCCCCCC
Q 019351 239 ARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVG---RVARAIAIMS-HPIPNTND 314 (342)
Q Consensus 239 ~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~~~~~~~~~~~---~~~~~~~i~~-~~l~~~~~ 314 (342)
+|.+...|+.+.+|+++.++... +. |..|..++.+..|.+||....+.+...+..+ ++.|+.|+.. +|.+.+..
T Consensus 236 aRssav~GgtymLn~~i~ein~t-k~-v~~v~~~~~~~ka~KiI~~~~~~~~~~~~~~q~yriiRa~Ci~~~h~~~~~~~ 313 (434)
T COG5044 236 ARSSAVYGGTYMLNQAIDEINET-KD-VETVDKGSLTQKAGKIISSPTYFREDSKSVGQFYRIIRAICILLVHPVPFTTG 313 (434)
T ss_pred HHhhhccCceeecCcchhhhccc-cc-eeeeecCcceeecCcccCCcccccccccccchhhhhhHhhhhhhcCccccccc
Confidence 99999999999999999999765 33 4456667889999999999998876544433 7888888887 89888878
Q ss_pred CCeEEEEecCCCCCCcCceEE
Q 019351 315 SHSVQVILPQKQLGRRSDIQK 335 (342)
Q Consensus 315 ~~~~~~~~p~~~~~~~~~~~~ 335 (342)
.++.+.++|+.+.+|+++||+
T Consensus 314 ~ds~~iif~~~~lk~~~~i~v 334 (434)
T COG5044 314 LDSLQIIFPPFSLKRKNDIQV 334 (434)
T ss_pred cccceeeechhhhcccCceEE
Confidence 888999999999999999975
No 5
>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.6e-36 Score=257.41 Aligned_cols=303 Identities=34% Similarity=0.632 Sum_probs=253.1
Q ss_pred CcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCcccchH--------HHHHhc------------c-CCC--
Q 019351 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLI--------QLWKRF------------R-GNE-- 59 (342)
Q Consensus 3 ~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t~~~~--------~~~~~~------------~-~~~-- 59 (342)
++|||||||+|+.....|...++.|.+|+++|.++++||.++++..+ .+...- . ++.
T Consensus 7 ~~fDvVViGTGlpESilAAAcSrsG~sVLHlDsn~yYGg~waSfSms~ihe~~e~~l~~~d~ls~eVe~~~al~~n~~~~ 86 (547)
T KOG4405|consen 7 EEFDVVVIGTGLPESILAAACSRSGSSVLHLDSNEYYGGNWASFSMSMIHEVEEAALTKKDHLSNEVEPPSALQKNNAPP 86 (547)
T ss_pred hhccEEEEcCCCcHHHHHHHhhhcCCceEeccCccccCCcccceeechhhhhhHHHHhhhhccccccCCCccccccCCCC
Confidence 46999999999999999999999999999999999999999999877 222110 0 000
Q ss_pred ----------------CCCC---C-------------CCCCCcceeccCcchhccccHHHHHHhhcCCcceeeEEEcCce
Q 019351 60 ----------------QPPA---H-------------LGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGS 107 (342)
Q Consensus 60 ----------------~~~~---~-------------~g~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~l~~~~~~~~ 107 (342)
++|. + ...++.|++|+.|+++++.|.++++|+++++.+|.||+.++..
T Consensus 87 t~~sn~e~~~~vEken~~~~s~~d~~E~~p~~nr~~i~~~~RRFniDLvpkilys~g~lI~lLikS~vsrYaEFK~V~r~ 166 (547)
T KOG4405|consen 87 TPPSNNEIFLEVEKENCIPSSLKDSVEDSPSKNRSQIEKESRRFNIDLVPKILYSAGELIQLLIKSNVSRYAEFKNVDRI 166 (547)
T ss_pred CCCCCchhhhheeeeccccccccchhhhcccccHHHHHHhccccchhhhhHHHhcccHHHHHHHHhcchhhhhhhccchh
Confidence 0110 0 1235789999999999999999999999999999999999999
Q ss_pred EEEeCCeEEecCCCcHHHhcCCCCChhhHHHHHHHHHHHhhcCC-CCcccccccCCCCCcHHHHHHHcCCChhHHHHHHh
Q 019351 108 FVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDE-NDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGH 186 (342)
Q Consensus 108 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~ 186 (342)
+...+|.+.++|+++.+.|+++-+++++|+.+|||+.++..|.. +.++.. .++...+|.|||+.++++++++.++.+
T Consensus 167 l~~~eg~l~~VPcSRadvFnsk~LTivEKr~LMKFltfc~~y~tEk~~~~~--~~~~e~~F~EyL~~~rltp~lqs~vl~ 244 (547)
T KOG4405|consen 167 LAFREGELEQVPCSRADVFNSKSLTIVEKRMLMKFLTFCQEYLTEKDPDEY--VEFRERPFSEYLKTMRLTPKLQSIVLH 244 (547)
T ss_pred hcccCCeeeecCchHHhhhcccchhHHHHHHHHHHHHHHHHhhhccCcHHH--HHhhcCcHHHHHHhcCCChhhHHHHHH
Confidence 99999999999999999999999999999999999999999852 222221 133567999999999999999999999
Q ss_pred hhhcccCCCCCCCchHHHHHHHHHHHHhhccccCCCceEEeCCCCChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcE
Q 019351 187 ALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKV 266 (342)
Q Consensus 187 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~ 266 (342)
.+++.... ...+..++.+.+.|+.++|+| |++||+||.+|.++|+++++|.|+..|+.+.++.+|+.|..+ ++..
T Consensus 245 aIaM~~~~---~~tt~eGm~at~~fl~slGrf-gntpfLfPlYGqGELpQcFCRlcAVfGgIYcLr~~Vq~ivld-k~s~ 319 (547)
T KOG4405|consen 245 AIAMLSES---QLTTIEGMDATKNFLTSLGRF-GNTPFLFPLYGQGELPQCFCRLCAVFGGIYCLRRPVQAIVLD-KESL 319 (547)
T ss_pred HHHhcCcc---cccHHHHHHHHHHHHHHhhcc-CCCcceeeccCCCcchHHHHHHHHHhcceEEeccchhheeec-cccc
Confidence 99887643 246788999999999999999 999999999999999999999999999999999999999877 3322
Q ss_pred E---EEEeCCcEEEcCEEEECCCCCCccccc---cceeEEEEEEecCCCCCC
Q 019351 267 V---GVTSEGETAKCKKVVCDPSYLPNKVRK---VGRVARAIAIMSHPIPNT 312 (342)
Q Consensus 267 ~---~v~~~g~~~~a~~vI~~~~~~~~~~~~---~~~~~~~~~i~~~~l~~~ 312 (342)
. ++...|+++.|+++|++.+|.|+.+-. ...+.|.+.|...++..+
T Consensus 320 ~~~~~l~s~g~ri~~k~~v~s~~y~pe~~~~~~~~K~Israv~itd~sil~~ 371 (547)
T KOG4405|consen 320 DCKAILDSFGQRINAKNFVVSPSYAPEVVCSRVQLKQISRAVLITDPSILKT 371 (547)
T ss_pred chhhhHhhhcchhcceeeeecCcccccccccccchhhcceeEEecCccccch
Confidence 2 344478999999999999999865422 235788888888887665
No 6
>PRK07233 hypothetical protein; Provisional
Probab=99.91 E-value=9.5e-23 Score=190.34 Aligned_cols=250 Identities=21% Similarity=0.267 Sum_probs=154.6
Q ss_pred cEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCcccchHHHHHhccCCCCCCCCCCCCCcceeccCcchhc-ccc
Q 019351 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFII-ANG 84 (342)
Q Consensus 6 DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~ 84 (342)
+|+|||||++||+||++|+++|++|+|+|+++++||+++++..++ +.+|.+.+.+. ...
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~g--------------------~~~d~g~~~~~~~~~ 60 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGLAASFEFGG--------------------LPIERFYHHIFKSDE 60 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCceeeeccCC--------------------cchhhhhhhhccccH
Confidence 599999999999999999999999999999999999999886532 34444444443 234
Q ss_pred HHHHHHhhcCCcceeeEEEcCceEEEeCCeEEecCCCcHHHhcCCCCChhhHHHHHHHHHHHhhcCCCCcccccccCCCC
Q 019351 85 ALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTR 164 (342)
Q Consensus 85 ~l~~~l~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (342)
++.+++.+.++.....+.... ..++.+|..+.++ +....+....+++.++-........... . .....++.
T Consensus 61 ~~~~l~~~lg~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------~~~~~~~~ 131 (434)
T PRK07233 61 ALLELLDELGLEDKLRWRETK-TGYYVDGKLYPLG-TPLELLRFPHLSLIDKFRLGLLTLLARR-I------KDWRALDK 131 (434)
T ss_pred HHHHHHHHcCCCCceeeccCc-eEEEECCeEecCC-CHHHHHcCCCCCHHHHHHhHHHHHhhhh-c------cccccccc
Confidence 566677776765544443322 2234466655443 2233333333343332211111111110 0 01113467
Q ss_pred CcHHHHHHHcCCChhHHHHHHhhhhcccCCCCCCCchHHHHHHHHHHHHhhccccC-CCceEEeCCCCChHHHHHHHHHH
Q 019351 165 VTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQG-GSPYIYPLYGLGELPQAFARLSA 243 (342)
Q Consensus 165 ~s~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~gG~~~l~~~l~~~~~ 243 (342)
.|+.+|+++...++....++.+.+...........+....+..+..... ..... ...+.+++||++.+++.|++.++
T Consensus 132 ~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~--~~~~~~~~~~~~~~gG~~~l~~~l~~~l~ 209 (434)
T PRK07233 132 VPAEEWLRRWSGEGVYEVFWEPLLESKFGDYADDVSAAWLWSRIKRRGN--RRYSLFGEKLGYLEGGFATLIDALAEAIE 209 (434)
T ss_pred ccHHHHHHHhcCHHHHHHHHHHHHhcccCCCccccCHHHHHHHHhhhhc--cccccCCceEeccCCCHHHHHHHHHHHHH
Confidence 9999999987433333445555443222222222233333333222110 00101 23477899999999999999999
Q ss_pred HcCcEEEcCCccceEEEcCCCcEEEEEeCCcEEEcCEEEECCCC
Q 019351 244 VYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSY 287 (342)
Q Consensus 244 ~~G~~i~~~~~V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~~ 287 (342)
+.|++|+++++|++|+.+ ++++.++..+++++.||+||+|++.
T Consensus 210 ~~g~~v~~~~~V~~i~~~-~~~~~~~~~~~~~~~ad~vI~a~p~ 252 (434)
T PRK07233 210 ARGGEIRLGTPVTSVVID-GGGVTGVEVDGEEEDFDAVISTAPP 252 (434)
T ss_pred hcCceEEeCCCeeEEEEc-CCceEEEEeCCceEECCEEEECCCH
Confidence 999999999999999987 6666666678889999999999864
No 7
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=99.91 E-value=1.2e-23 Score=190.66 Aligned_cols=247 Identities=14% Similarity=0.223 Sum_probs=166.8
Q ss_pred cEEEECCCchHHHHHHhhhhCC--CeEEEEcCCCCCCCcCcccchHHHHHhccCCCCCCCCCCCCCcceeccCcchhccc
Q 019351 6 DVIVLGTGLKECILSGLLSVDG--LKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIAN 83 (342)
Q Consensus 6 DViIiG~GiaGl~aA~~L~~~G--~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 83 (342)
.|+|||||++||+|||+|++++ .+|+|||+.+++||...|+..+ .|.+|.+++.|...
T Consensus 2 ~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~T~~~~--------------------G~~~e~G~~~f~~~ 61 (444)
T COG1232 2 KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRTVKID--------------------GFLFERGPHHFLAR 61 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEEEEeeC--------------------CEEEeechhheecc
Confidence 5999999999999999999999 9999999999999999999764 38888888777666
Q ss_pred -cHHHHHHhhcCCcceeeEEEcCceEEEeCCeEEecCCCcHHHhcCCCCChhhHHHHHHH-HHHHhhcCCCCcccccccC
Q 019351 84 -GALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKF-FIYVQDYDENDPKTHEGMD 161 (342)
Q Consensus 84 -~~l~~~l~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~k~~~~~~-~~~~~~~~~~~~~~~~~~~ 161 (342)
..+++++.+.++++.+.+......|++.+|+++.+|....-.+.....+ ++..+.++ .++.... .+-.
T Consensus 62 ~~~~l~li~eLGled~l~~~~~~~~~i~~~gkl~p~P~~~i~~ip~~~~~--~~~~~~~~~~~~~~~~--------~~~~ 131 (444)
T COG1232 62 KEEILDLIKELGLEDKLLWNSTARKYIYYDGKLHPIPTPTILGIPLLLLS--SEAGLARALQEFIRPK--------SWEP 131 (444)
T ss_pred hHHHHHHHHHhCcHHhhccCCcccceEeeCCcEEECCccceeecCCcccc--chhHHHHHHHhhhccc--------CCCC
Confidence 6777888889998887776666678889999999996532222222221 12222222 2222210 0112
Q ss_pred CCCCcHHHHHHHcCCChhHHH-HHHhhhhcccCCCCCCCchHHHHHHH----HHHHHhhc-----cccC----CCceEEe
Q 019351 162 LTRVTTRELIAKYGLDDNTID-FIGHALALHRDDRYLNEPALDTVKRM----KLYAESIA-----RFQG----GSPYIYP 227 (342)
Q Consensus 162 ~~~~s~~~~l~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~-----~~~g----~~~~~~~ 227 (342)
.++.++.+|++++ +.+++.+ ++.+++.--..++...-++...+... ..+-..+. .+.. ...|.+.
T Consensus 132 ~~d~sv~~f~r~~-fG~ev~~~~~~pll~giy~~~~~~LS~~~~~p~~~~~e~~~~s~~~g~~~~~~~~~~~~~~~~~~~ 210 (444)
T COG1232 132 KQDISVGEFIRRR-FGEEVVERFIEPLLEGIYAGDADKLSAAAAFPILARAERKYGSLLRGAKKEGLPKQSLKKEKFGYL 210 (444)
T ss_pred CCCcCHHHHHHHH-HhHHHHHHHHHHHhhchhcCCHHHhhHHHhcchhhhhhhhhcchhhhhhhccCccccccccccccc
Confidence 3689999999988 6666665 55665532111211111122111111 11111100 0000 1257788
Q ss_pred CCCCChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCcEEEcCEEEECCCC
Q 019351 228 LYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSY 287 (342)
Q Consensus 228 ~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~~ 287 (342)
+||++.|+++|++.+... |+++++|++|.++ ....+.+..+|.+++||.||+|+..
T Consensus 211 ~gG~~~l~~al~~~l~~~---i~~~~~V~~i~~~-~~~~~~~~~~g~~~~~D~VI~t~p~ 266 (444)
T COG1232 211 RGGLQSLIEALAEKLEAK---IRTGTEVTKIDKK-GAGKTIVDVGGEKITADGVISTAPL 266 (444)
T ss_pred CccHHHHHHHHHHHhhhc---eeecceeeEEEEc-CCccEEEEcCCceEEcceEEEcCCH
Confidence 999999999999987654 9999999999987 5555666778889999999999864
No 8
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=99.91 E-value=7.1e-23 Score=194.33 Aligned_cols=249 Identities=20% Similarity=0.253 Sum_probs=155.0
Q ss_pred EEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCcccchHHHHHhccCCCCCCCCCCCCCcceeccCcchhccccHH
Q 019351 7 VIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANGAL 86 (342)
Q Consensus 7 ViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l 86 (342)
|||||||++||+||.+|+++|++|+|+|+++++||+++|++.+ .|.+|.+++++...+.+
T Consensus 1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~~~GG~~~t~~~~--------------------G~~fD~G~~~~~~~~~~ 60 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPGGRAGVLEDD--------------------GFRFDTGPTVITMPEAL 60 (502)
T ss_pred CEEECcCHHHHHHHHHHHhCCCcEEEEECCCCCcCceEEEecC--------------------CeEEecCCeEEccccHH
Confidence 6999999999999999999999999999999999999999764 36677777766544434
Q ss_pred HHHHhhcC--CcceeeEEEcCceEEE--eCCeEEecCCCcHHHhcCCCCCh--hhHHHHHHHHHHHhhcCC--------C
Q 019351 87 VRVLIHTD--VTKYLYFKAVDGSFVY--NKGKVHKVPATDMEALKSPLMGI--FEKRRARKFFIYVQDYDE--------N 152 (342)
Q Consensus 87 ~~~l~~~~--~~~~l~~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~--~~k~~~~~~~~~~~~~~~--------~ 152 (342)
.+++.+.+ +.+++++...+..+.. .+|..+.++.+ .+.+...+..+ -+...+.+|++.++.... .
T Consensus 61 ~~l~~~lg~~l~~~l~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (502)
T TIGR02734 61 EELFALAGRDLADYVELVPLDPFYRLCWEDGSQLDVDND-QEELEAQIARFNPGDVAGYRRFLDYAERVYREGYRKLGYV 139 (502)
T ss_pred HHHHHHcCCChhheEEEEECCCceEEECCCCCEEEecCC-HHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 44444443 3455777766654433 35767777643 33222211111 112233334333322110 0
Q ss_pred Cccc----------ccccCCCCCcHHHHHHHcCCChhHHHHHHhhhhcccCCCCCCCchHHHHHHHHHHHHhhccccCCC
Q 019351 153 DPKT----------HEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGS 222 (342)
Q Consensus 153 ~~~~----------~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 222 (342)
.... .........|+.+|++++.-++.++.++.. ............+... .+..+. .+ ..
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~l~~-~~~~~g~~p~~~~~~~---~l~~~~----~~--~~ 209 (502)
T TIGR02734 140 PFLSPRDLLRADLPQLLALLAWRSLYSKVARFFSDERLRQAFSF-HALFLGGNPFRTPSIY---ALISAL----ER--EW 209 (502)
T ss_pred CCCCHHHHHhHhhHhhhhccCcCCHHHHHHhhcCCHHHHHHhcc-cceeeccCcccchHHH---HHHHHH----Hh--hc
Confidence 0000 001123468889999887445555544432 1111111111111111 111111 11 23
Q ss_pred ceEEeCCCCChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCcEEEcCEEEECCCC
Q 019351 223 PYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSY 287 (342)
Q Consensus 223 ~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~-~g~~~~a~~vI~~~~~ 287 (342)
.++++.||+..++++|.+.++++|++|+++++|++|..+ ++++++|++ +|+++.||+||+|++.
T Consensus 210 g~~~~~gG~~~l~~al~~~~~~~G~~i~~~~~V~~i~~~-~~~~~~V~~~~g~~~~ad~VI~a~~~ 274 (502)
T TIGR02734 210 GVWFPRGGTGALVAAMAKLAEDLGGELRLNAEVIRIETE-GGRATAVHLADGERLDADAVVSNADL 274 (502)
T ss_pred eEEEcCCCHHHHHHHHHHHHHHCCCEEEECCeEEEEEee-CCEEEEEEECCCCEEECCEEEECCcH
Confidence 345899999999999999999999999999999999887 677777877 5678999999999875
No 9
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=99.90 E-value=1.8e-22 Score=189.82 Aligned_cols=246 Identities=14% Similarity=0.213 Sum_probs=153.6
Q ss_pred cEEEECCCchHHHHHHhhhhC------CCeEEEEcCCCCCCCcCcccchHHHHHhccCCCCCCCCCCCCCcceeccCcch
Q 019351 6 DVIVLGTGLKECILSGLLSVD------GLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKF 79 (342)
Q Consensus 6 DViIiG~GiaGl~aA~~L~~~------G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 79 (342)
+|+|||||++||+||++|+++ |.+|+|||+++++||+++|.+.. .+.+|++++.
T Consensus 3 ~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~T~~~~--------------------g~~~e~G~~~ 62 (463)
T PRK12416 3 TVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHSVEEK--------------------DFIMESGADS 62 (463)
T ss_pred eEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEEEEeeC--------------------CEEEecCcHH
Confidence 699999999999999999986 37999999999999999998643 3667888877
Q ss_pred hcccc-HHHHHHhhcCCcceeeEEEcCceEEEeCCeEEecCCCc--------HHHhcCCCCChhhHHHHHHHHHHHhhcC
Q 019351 80 IIANG-ALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATD--------MEALKSPLMGIFEKRRARKFFIYVQDYD 150 (342)
Q Consensus 80 ~~~~~-~l~~~l~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~--------~~~~~~~~~~~~~k~~~~~~~~~~~~~~ 150 (342)
++... .+.+++.+.++...+.+......+++.++....+|... ...+...+++...+ +..+...+.
T Consensus 63 i~~~~~~~~~l~~~lgl~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~--~~~~~~~~~--- 137 (463)
T PRK12416 63 IVARNEHVMPLVKDLNLEEEMVYNETGISYIYSDNTLHPIPSDTIFGIPMSVESLFSSTLVSTKGK--IVALKDFIT--- 137 (463)
T ss_pred HhcCCHHHHHHHHHcCCccceecCCCCceEEEECCeEEECCCCCeecCCCChHHhhcCCcCCHHHH--HHhhhhhcc---
Confidence 76543 55677777777665443333456666677776665431 22233333332221 111111111
Q ss_pred CCCcccccccCCCCCcHHHHHHHcCCChhHHH-HHHhhhhcccCCCCCCCchHHHHHHHHHHHHhhc-----------c-
Q 019351 151 ENDPKTHEGMDLTRVTTRELIAKYGLDDNTID-FIGHALALHRDDRYLNEPALDTVKRMKLYAESIA-----------R- 217 (342)
Q Consensus 151 ~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~- 217 (342)
.. .. ..++.|+.+|+++. +.++..+ ++.+++......+....+....+..+..+....+ .
T Consensus 138 ~~--~~----~~~~~sv~~~l~~~-~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 210 (463)
T PRK12416 138 KN--KE----FTKDTSLALFLESF-LGKELVERQIAPVLSGVYSGKLNELTMASTLPYLLDYKNKYGSIIKGFEENKKQF 210 (463)
T ss_pred CC--CC----CCCCCCHHHHHHHh-cCHHHHHHHHHHHhcccccCCcccccHHHhhHHHHHHHHhcCcHHHHHHHhhhcc
Confidence 00 00 12579999999987 5555543 4455442211122111222222222222211110 0
Q ss_pred -ccCCCceEEeCCCCChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCcEEEcCEEEECCCC
Q 019351 218 -FQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSY 287 (342)
Q Consensus 218 -~~g~~~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~-~g~~~~a~~vI~~~~~ 287 (342)
..+...+.+++||++.++++|++.+.. ++|+++++|++|+.+ ++++ .|++ +|++++||+||+|+..
T Consensus 211 ~~~~~~~~~~~~gG~~~l~~~l~~~l~~--~~i~~~~~V~~I~~~-~~~~-~v~~~~g~~~~ad~VI~a~p~ 278 (463)
T PRK12416 211 QSAGNKKFVSFKGGLSTIIDRLEEVLTE--TVVKKGAVTTAVSKQ-GDRY-EISFANHESIQADYVVLAAPH 278 (463)
T ss_pred CCCCCCceEeeCCCHHHHHHHHHHhccc--ccEEcCCEEEEEEEc-CCEE-EEEECCCCEEEeCEEEECCCH
Confidence 012345788999999999999987643 689999999999987 5554 4554 6778999999999853
No 10
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.90 E-value=5.6e-23 Score=192.89 Aligned_cols=249 Identities=21% Similarity=0.321 Sum_probs=147.5
Q ss_pred cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCcccchHHHHHhccCCCCCCCCCCCCCcceeccCcchhccc
Q 019351 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIAN 83 (342)
Q Consensus 4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 83 (342)
.+||||||||++||+||.+|+++|++|+||||++.+||+++++...+ |.+|.++..+...
T Consensus 3 ~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~GG~a~t~e~~G--------------------f~fd~G~~~~~~~ 62 (487)
T COG1233 3 MYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGGRARTFELDG--------------------FRFDTGPSWYLMP 62 (487)
T ss_pred CccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCCCcceEEEeccc--------------------eEeccCcceeecC
Confidence 48999999999999999999999999999999999999999998643 5666666444333
Q ss_pred c--HHHHHHhhcCCcce-eeEEEcCceEEE--eCCeEEecCCCcHHHhcCCCCCh--hhHHHHHHHHHHHhh-cC-----
Q 019351 84 G--ALVRVLIHTDVTKY-LYFKAVDGSFVY--NKGKVHKVPATDMEALKSPLMGI--FEKRRARKFFIYVQD-YD----- 150 (342)
Q Consensus 84 ~--~l~~~l~~~~~~~~-l~~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~--~~k~~~~~~~~~~~~-~~----- 150 (342)
. ++.+++.+ +..+ +++...+..+.. .+|....++.+ .+.+...+... .+...+.+++..+.+ +.
T Consensus 63 ~~~~~~~~l~~--l~~~~l~~~~~~~~~~~~~~~g~~~~~~~d-~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 139 (487)
T COG1233 63 DPGPLFRELGN--LDADGLDLLPPDPAYRVFLPDGDAIDVYTD-LEATAELLESLEPGDGEALARYLRLLARLYELLAAL 139 (487)
T ss_pred chHHHHHHhcc--CcccceeeeccCCceeeecCCCCEEEecCC-HHHHHHHHHhhCcccHHHHHHHHHHHHHhhHHHHhh
Confidence 2 34444432 4433 666555554433 24667766643 33322211111 111223333332222 11
Q ss_pred --CCCccccc-----------ccCCCCCcHHHHHHHcCCChhH-HHHHHhhhhcccCCCCCCCchHHHHHHHHHHHHhhc
Q 019351 151 --ENDPKTHE-----------GMDLTRVTTRELIAKYGLDDNT-IDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIA 216 (342)
Q Consensus 151 --~~~~~~~~-----------~~~~~~~s~~~~l~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (342)
........ .......+..+++..+ +..+. +..+...... . . ..|.... .+..++...
T Consensus 140 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-f~~~~~r~~~~~~~~~---~-~-~~p~~~~--a~~~~~~~~- 210 (487)
T COG1233 140 LLAPPRSELLLVPDTPERLLRLLGFSLTSALDFFRGR-FGSELLRALLAYSAVY---G-G-APPSTPP--ALYLLLSHL- 210 (487)
T ss_pred cCCCchhhhhhccccHHHHHHHHHHhhhhHHHHHHHH-hcCHHHHHHHHHHHHh---c-C-CCCCchh--HHHHHHHHh-
Confidence 00000000 0012334555555555 44333 3233222111 1 1 1221111 111111111
Q ss_pred cccCCCceEEeCCCCChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCcEEEcCEEEECCCC
Q 019351 217 RFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSY 287 (342)
Q Consensus 217 ~~~g~~~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~-~g~~~~a~~vI~~~~~ 287 (342)
. ....+.+|+||++.++++|++.++++|++|+++++|++|..+ +++.+.+.+ ++..+++|.||++..+
T Consensus 211 ~--~~~G~~~p~GG~~al~~aL~~~~~~~Gg~I~~~~~V~~I~v~-~g~g~~~~~~~g~~~~ad~vv~~~~~ 279 (487)
T COG1233 211 G--LSGGVFYPRGGMGALVDALAELAREHGGEIRTGAEVSQILVE-GGKGVGVRTSDGENIEADAVVSNADP 279 (487)
T ss_pred c--ccCCeeeeeCCHHHHHHHHHHHHHHcCCEEECCCceEEEEEe-CCcceEEeccccceeccceeEecCch
Confidence 1 134467999999999999999999999999999999999987 776666666 4458999999998876
No 11
>PLN02576 protoporphyrinogen oxidase
Probab=99.90 E-value=3.4e-22 Score=189.57 Aligned_cols=251 Identities=18% Similarity=0.188 Sum_probs=160.0
Q ss_pred CcccEEEECCCchHHHHHHhhhhC-CCeEEEEcCCCCCCCcCcccchHHHHHhccCCCCCCCCCCCCCcceeccCcchhc
Q 019351 3 EEYDVIVLGTGLKECILSGLLSVD-GLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFII 81 (342)
Q Consensus 3 ~~~DViIiG~GiaGl~aA~~L~~~-G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 81 (342)
+++||+|||||++||+||++|+++ |++|+|+|+++++||+++|.+.+ .+.+|.+++.+.
T Consensus 11 ~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr~~t~~~~--------------------g~~~d~G~~~~~ 70 (496)
T PLN02576 11 SSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGNITSVSED--------------------GFIWEEGPNSFQ 70 (496)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCceeEeccC--------------------CeEEecCCchhc
Confidence 457999999999999999999999 99999999999999999998653 377888988888
Q ss_pred cccHHHHHHhhcCCcceeeEEE-cCceEEEeCCeEEecCCCcHHHhcCCCCChhhHHHHHHHHHHHhhcCCCCccccccc
Q 019351 82 ANGALVRVLIHTDVTKYLYFKA-VDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGM 160 (342)
Q Consensus 82 ~~~~l~~~l~~~~~~~~l~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~ 160 (342)
...+.+..+.+.++...+.+.. ....+++.+|+++.+|.+..+.+...++++.++-.+ ..... .+....+
T Consensus 71 ~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~------ 141 (496)
T PLN02576 71 PSDPELTSAVDSGLRDDLVFPDPQAPRYVVWNGKLRPLPSNPIDLPTFDLLSAPGKIRA--GLGAF-GWKRPPP------ 141 (496)
T ss_pred cCcHHHHHHHHcCChhheecCCCCceEEEEECCEEEEcCCChHHhcCcCcCChhHHHHH--hHHHh-hccCCCC------
Confidence 7776666666667766554432 233566679999988876555555666665443221 11111 1100000
Q ss_pred CCCCCcHHHHHHHcCCChhHHH-HHHhhhhcccCCCCCCCchHHHHHHHHHHHHhhc--------cc-------------
Q 019351 161 DLTRVTTRELIAKYGLDDNTID-FIGHALALHRDDRYLNEPALDTVKRMKLYAESIA--------RF------------- 218 (342)
Q Consensus 161 ~~~~~s~~~~l~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~------------- 218 (342)
..++.|+.+|+++. +.+...+ ++.+++.-....+....+....++.+..+....+ ..
T Consensus 142 ~~~~~sv~~~l~~~-~g~~~~~~~~~p~~~~~~~~~~~~lS~~~~~~~~~~~e~~~gs~~~~~l~~~~~~~~~~~~~~~~ 220 (496)
T PLN02576 142 PGREESVGEFVRRH-LGDEVFERLIDPFVSGVYAGDPSSLSMKAAFPKLWNLEKRGGSIIGGAIKAIQEAKKNPKPEPRD 220 (496)
T ss_pred CCCCCcHHHHHHHh-cCHHHHHHHHHHHhCceecCCHHHHhHHHHhHHHHHHHHhcCcHHHHHHHhhhhhcccccccccc
Confidence 12578999999987 6666654 4444442211111111122222222211100000 00
Q ss_pred -----cCCCceEEeCCCCChHHHHHHHHHHHcC-cEEEcCCccceEEEcCCCcEEEEE--e-CC-cEEEcCEEEECCCC
Q 019351 219 -----QGGSPYIYPLYGLGELPQAFARLSAVYG-GTYMLNKPECKVEFDEEGKVVGVT--S-EG-ETAKCKKVVCDPSY 287 (342)
Q Consensus 219 -----~g~~~~~~~~gG~~~l~~~l~~~~~~~G-~~i~~~~~V~~i~~~~~~~~~~v~--~-~g-~~~~a~~vI~~~~~ 287 (342)
.......+.++|++.|++.|++.+ + .+|++|++|++|+.+ +++.+.|+ + +| +++.||+||+|+..
T Consensus 221 ~~~~~~~~~~~~~~~gG~~~L~~~la~~l---~~~~i~l~~~V~~I~~~-~~~~~~v~~~~~~g~~~~~ad~VI~a~P~ 295 (496)
T PLN02576 221 PRLPKPKGQTVGSFRGGLQTLPDALAKRL---GKDKVKLNWKVLSLSKN-DDGGYSLTYDTPEGKVNVTAKAVVMTAPL 295 (496)
T ss_pred cccccccCCeeEeccchHHHHHHHHHHhh---CcCcEEcCCEEEEEEEC-CCCcEEEEEecCCCceeEEeCEEEECCCH
Confidence 011234667899999999998754 5 689999999999987 44312333 2 34 36999999999763
No 12
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=99.90 E-value=2.3e-22 Score=189.18 Aligned_cols=242 Identities=15% Similarity=0.219 Sum_probs=156.5
Q ss_pred ccEEEECCCchHHHHHHhhhhC----CCeEEEEcCCCCCCCcCcccchHHHHHhccCCCCCCCCCCCCCcceeccCcchh
Q 019351 5 YDVIVLGTGLKECILSGLLSVD----GLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFI 80 (342)
Q Consensus 5 ~DViIiG~GiaGl~aA~~L~~~----G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 80 (342)
.||+|||||++||+||++|+++ |++|+|+|+++++||+++|...+ .+.+|.+++.+
T Consensus 3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~t~~~~--------------------g~~~e~G~~~~ 62 (462)
T TIGR00562 3 KHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQTVKED--------------------GYLIERGPDSF 62 (462)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEEEEeeC--------------------CEEEecCcccc
Confidence 5899999999999999999999 99999999999999999988643 26778888877
Q ss_pred ccccH-HHHHHhhcCCcceeeEEEcCceEEEeC-CeEEecCCCcHHHhcCCCCChhhHHHHHHHHHHHhhcCCCCccccc
Q 019351 81 IANGA-LVRVLIHTDVTKYLYFKAVDGSFVYNK-GKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHE 158 (342)
Q Consensus 81 ~~~~~-l~~~l~~~~~~~~l~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~ 158 (342)
....+ +.+++.+.++...+........+++.+ |+.+.+|.+..+.+...+.++..+ +...+... ....
T Consensus 63 ~~~~~~~~~l~~~lgl~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~--~~~~~~~~---~~~~----- 132 (462)
T TIGR00562 63 LERKKSAPDLVKDLGLEHVLVSDATGQRYVLVNRGKLMPVPTKIAPFVKTGLFSLGGK--LRAGMDFI---RPAS----- 132 (462)
T ss_pred ccCChHHHHHHHHcCCCcccccCCCCceEEEECCCceecCCCChHHHhcCCCCCchhh--HHhhhhhc---cCCC-----
Confidence 76554 667777777766543322334555555 888888866555555555554332 11111111 1000
Q ss_pred ccCCCCCcHHHHHHHcCCChhHHH-HHHhhhhcccCCCCCCCch----HHHHHHHHHHHH-------hh-----------
Q 019351 159 GMDLTRVTTRELIAKYGLDDNTID-FIGHALALHRDDRYLNEPA----LDTVKRMKLYAE-------SI----------- 215 (342)
Q Consensus 159 ~~~~~~~s~~~~l~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~----~~~~~~~~~~~~-------~~----------- 215 (342)
...+.|+.||+++. +.+.+.+ ++.+.+. ..+..++. ...+..+..... .+
T Consensus 133 --~~~d~s~~e~l~~~-~g~~~~~~~~~p~~~----~~~~~~~~~ls~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 205 (462)
T TIGR00562 133 --PGKDESVEEFVRRR-FGDEVVENLIEPLLS----GIYAGDPSKLSLKSTFPKFYQTEQKHGSLILGMKKTRNLPQGSG 205 (462)
T ss_pred --CCCCcCHHHHHHHh-cCHHHHHHHHHHHhc----ccccCCHHHhhHHHHhHHHHHHHHhcCcHHHHHHhhcccCcccc
Confidence 11358999999877 5555544 4444442 22222332 222222111100 00
Q ss_pred -cccc-C-CCceEEeCCCCChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCcEEEcCEEEECCCC
Q 019351 216 -ARFQ-G-GSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSY 287 (342)
Q Consensus 216 -~~~~-g-~~~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~-~g~~~~a~~vI~~~~~ 287 (342)
..+. + ...+.++++|++.+++.|++.+. .++|+++++|++|..+ ++++ .|++ +|++++||+||+|++.
T Consensus 206 ~~~~~~~~~~~~~~~~gG~~~l~~~l~~~l~--~~~i~~~~~V~~I~~~-~~~~-~v~~~~g~~~~ad~VI~t~P~ 277 (462)
T TIGR00562 206 LQLTAKKQGQDFQTLATGLETLPEEIEKRLK--LTKVYKGTKVTKLSHR-GSNY-TLELDNGVTVETDSVVVTAPH 277 (462)
T ss_pred ccccccccCCceEecchhHHHHHHHHHHHhc--cCeEEcCCeEEEEEec-CCcE-EEEECCCcEEEcCEEEECCCH
Confidence 0010 1 12256788999999999998663 2789999999999987 5554 4555 5678999999999864
No 13
>PRK07208 hypothetical protein; Provisional
Probab=99.90 E-value=8.7e-22 Score=185.97 Aligned_cols=251 Identities=16% Similarity=0.188 Sum_probs=152.6
Q ss_pred CCCcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCcccchHHHHHhccCCCCCCCCCCCCCcceeccCcchh
Q 019351 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFI 80 (342)
Q Consensus 1 m~~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 80 (342)
|+.+.||+|||||++||+||++|+++|++|+|+|+++++||++.|.... .+.+|.+++.+
T Consensus 1 ~~~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG~~~s~~~~--------------------g~~~d~G~h~~ 60 (479)
T PRK07208 1 MTNKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGGISRTVTYK--------------------GNRFDIGGHRF 60 (479)
T ss_pred CCCCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeeeccC--------------------CceEccCCcee
Confidence 7777899999999999999999999999999999999999999987643 25567777666
Q ss_pred cccc-HHHHHHhhcCCcceeeEEEcCceEEEeCCeEEecCCCcHHHhcCCCCChhhHHHHHHHHHHHhhcCCCCcccccc
Q 019351 81 IANG-ALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEG 159 (342)
Q Consensus 81 ~~~~-~l~~~l~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~ 159 (342)
.... .+.+++.+......+... .....++.+|..+.+|.+..+.+.. +++.. .+.....++..... +
T Consensus 61 ~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~~~~g~~~~~p~~~~~~l~~--~~~~~--~~~~~~~~~~~~~~--~----- 128 (479)
T PRK07208 61 FSKSPEVMDLWNEILPDDDFLLR-PRLSRIYYRGKFFDYPLKAFDALKN--LGLWR--TAKCGASYLKARLR--P----- 128 (479)
T ss_pred ccCCHHHHHHHHHhcCCCccccc-cccceEEECCEEecCCcchhHHHHh--CCHhH--HHHHHHHHHHHhcC--C-----
Confidence 5444 444555554432222111 2233455688888777543333321 22221 11222222222110 0
Q ss_pred cCCCCCcHHHHHHHcCCChhHH-HHHHhhhh-cccCCCCCCCchHHHHH---------HHHHHHHhh-c-------ccc-
Q 019351 160 MDLTRVTTRELIAKYGLDDNTI-DFIGHALA-LHRDDRYLNEPALDTVK---------RMKLYAESI-A-------RFQ- 219 (342)
Q Consensus 160 ~~~~~~s~~~~l~~~~~~~~~~-~~~~~~~~-l~~~~~~~~~~~~~~~~---------~~~~~~~~~-~-------~~~- 219 (342)
..+..|+.+|+.+. +.+.+. .++.+... ++. .+....+....+. .+....... + ...
T Consensus 129 -~~~~~s~~e~l~~~-~g~~~~~~~~~p~~~~~~~-~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (479)
T PRK07208 129 -RKEEDSFEDWVINR-FGRRLYSTFFKGYTEKVWG-VPCDEISADWAAQRIKGLSLGKAIRNALRRSLGLKRRNKEVETS 205 (479)
T ss_pred -CCCCCCHHHHHHHh-hCHHHHHHHHHHhhhhhhC-CChHHCCChHHhCcccCCCHHHHHHHHhhhcccccccCCCcccc
Confidence 01569999999876 444444 34444332 222 1111112221111 111111110 0 000
Q ss_pred CCCceEEeCCCCChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCc-EEEEEe---CCc--EEEcCEEEECCCC
Q 019351 220 GGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGK-VVGVTS---EGE--TAKCKKVVCDPSY 287 (342)
Q Consensus 220 g~~~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~-~~~v~~---~g~--~~~a~~vI~~~~~ 287 (342)
....+.+|+||++.+++.|++.+++.|++|+++++|++|..+ +++ ++.++. +|. ++.||+||+|++.
T Consensus 206 ~~~~~~~p~gG~~~l~~~L~~~l~~~g~~i~~~~~V~~I~~~-~~~~v~~~~~~~~~g~~~~~~ad~VI~a~p~ 278 (479)
T PRK07208 206 LIEEFRYPKLGPGQLWETAAEKLEALGGKVVLNAKVVGLHHD-GDGRIAVVVVNDTDGTEETVTADQVISSMPL 278 (479)
T ss_pred ceeEEeCCCCCcchHHHHHHHHHHHcCCEEEeCCEEEEEEEc-CCcEEEEEEEEcCCCCEEEEEcCEEEECCCH
Confidence 024578899999999999999999999999999999999987 444 344443 242 6899999999864
No 14
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=99.89 E-value=1.4e-22 Score=191.44 Aligned_cols=252 Identities=21% Similarity=0.287 Sum_probs=151.9
Q ss_pred ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCcccchHHHHHhccCCCCCCCCCCCCCcceeccCcchhccc-
Q 019351 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIAN- 83 (342)
Q Consensus 5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~- 83 (342)
+||+|||||++||+||.+|+++|++|+||||++.+||++++++.++ |.+|.+++.+...
T Consensus 1 ~dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~~~~~~G--------------------~~fd~g~~~~~~~~ 60 (493)
T TIGR02730 1 YDAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIPGGSAGYFEREG--------------------YRFDVGASMIFGFG 60 (493)
T ss_pred CcEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCCCceeEeccCC--------------------EEEEecchhheecC
Confidence 6999999999999999999999999999999999999999986542 5556666554321
Q ss_pred -----cHHHHHHhhcCCcceeeEEEcCceEEE--eCCeEEecCCCcHHHhcCCCCCh--hhHHHHHHHHHHHhhcCC---
Q 019351 84 -----GALVRVLIHTDVTKYLYFKAVDGSFVY--NKGKVHKVPATDMEALKSPLMGI--FEKRRARKFFIYVQDYDE--- 151 (342)
Q Consensus 84 -----~~l~~~l~~~~~~~~l~~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~--~~k~~~~~~~~~~~~~~~--- 151 (342)
..+.+.+...+ ..+++......+.+ .+|..+.++. +.+.+...+... -+...+.+|++.+.....
T Consensus 61 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~~-d~~~~~~~l~~~~P~~~~~~~~~~~~~~~~~~~~~ 137 (493)
T TIGR02730 61 DKGTTNLLTRALAAVG--RKLETIPDPVQIHYHLPNGLNVKVHR-EYDDFIQELVAKFPHEKEGIRRFYDECWQVFNCLN 137 (493)
T ss_pred CcccccHHHHHHHHcC--CcccccCCCccEEEECCCCeeEeeec-CHHHHHHHHHHHCchhHHHHHHHHHHHHHHHHHHH
Confidence 12222332222 12332222222222 3565566663 454443332221 122344455444332100
Q ss_pred -------CCcccc------------cccCCCCCcHHHHHHHcCCChhHHHHHHhhhhcccCCCCCCCchHHHHHHHHHHH
Q 019351 152 -------NDPKTH------------EGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYA 212 (342)
Q Consensus 152 -------~~~~~~------------~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 212 (342)
..+... ....+...|+.++++++.-++.++.++...............|.... ...+
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~l~~~~~~~~~~p~~~~p~~~~---~~~~- 213 (493)
T TIGR02730 138 SMELLSLEEPRYLFRVFFKHPLACLGLAKYLPQNAGDIARRYIRDPGLLKFIDIECFCWSVVPADQTPMINA---GMVF- 213 (493)
T ss_pred hhhhccccChHHHHHHHhhchhhhhHHHHHhhccHHHHHHHhcCCHHHHHHHHHHHHhccCCCcccchhhhH---HHhh-
Confidence 000000 00112247788888888666766666543221111110011121111 1111
Q ss_pred HhhccccCCCceEEeCCCCChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCcEEEcCEEEECCCCC
Q 019351 213 ESIARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYL 288 (342)
Q Consensus 213 ~~~~~~~g~~~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~-~g~~~~a~~vI~~~~~~ 288 (342)
... ....++++.||+..++++|.+.++++|++|+++++|++|..+ ++++.+|.+ +|+++.||+||+|++.+
T Consensus 214 ---~~~-~~~g~~~~~gG~~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~-~~~~~gv~~~~g~~~~ad~vV~a~~~~ 285 (493)
T TIGR02730 214 ---SDR-HYGGINYPKGGVGQIAESLVKGLEKHGGQIRYRARVTKIILE-NGKAVGVKLADGEKIYAKRIVSNATRW 285 (493)
T ss_pred ---ccc-ccceEecCCChHHHHHHHHHHHHHHCCCEEEeCCeeeEEEec-CCcEEEEEeCCCCEEEcCEEEECCChH
Confidence 001 123456899999999999999999999999999999999887 678888887 67789999999998764
No 15
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=99.88 E-value=1.1e-21 Score=184.17 Aligned_cols=246 Identities=15% Similarity=0.175 Sum_probs=147.1
Q ss_pred cEEEECCCchHHHHHHhhhhCC--CeEEEEcCCCCCCCcCcccchHHHHHhccCCCCCCCCCCCCCcceeccCcchhccc
Q 019351 6 DVIVLGTGLKECILSGLLSVDG--LKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIAN 83 (342)
Q Consensus 6 DViIiG~GiaGl~aA~~L~~~G--~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 83 (342)
+|+|||||++||+||+.|+++| ++|+|||+++++||+++|.+.. .+.+|++.+.+...
T Consensus 2 ~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~~t~~~~--------------------g~~~d~G~~~~~~~ 61 (451)
T PRK11883 2 KVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQTVRKD--------------------GFPIELGPESFLAR 61 (451)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceEEEEeeC--------------------CeEEecChHHhcCC
Confidence 6999999999999999999988 8999999999999999998653 25667777655543
Q ss_pred c-HHHHHHhhcCCcceeeEEEcCceEEEeCCeEEecCCCc--------HHHhcCCCCChhhHHHHHHHHHHHhhcCCCCc
Q 019351 84 G-ALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATD--------MEALKSPLMGIFEKRRARKFFIYVQDYDENDP 154 (342)
Q Consensus 84 ~-~l~~~l~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~--------~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~ 154 (342)
. .+.+++.+.++............+++.+|+.+.+|... ...+...+.+..++ + .......
T Consensus 62 ~~~~~~l~~~lgl~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~--~----~~~~~~~---- 131 (451)
T PRK11883 62 KPSAPALVKELGLEDELVANTTGQSYIYVNGKLHPIPPGTVMGIPTSIAPFLFAGLVSPIGK--L----RAAADLR---- 131 (451)
T ss_pred cHHHHHHHHHcCCccceecCCCCcceEEECCeEEECCCCCeeccCCCchhhhcCCCCCHHHH--H----HhhCccc----
Confidence 3 46667777776654322222334566688877766421 11111122221111 0 0111110
Q ss_pred ccccccCCCCCcHHHHHHHcCCChhHHH-HHHhhhh-cccCCCCCCCchHHHHHHHHHHHHh-------h----ccc--c
Q 019351 155 KTHEGMDLTRVTTRELIAKYGLDDNTID-FIGHALA-LHRDDRYLNEPALDTVKRMKLYAES-------I----ARF--Q 219 (342)
Q Consensus 155 ~~~~~~~~~~~s~~~~l~~~~~~~~~~~-~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~-------~----~~~--~ 219 (342)
.......++.|+.+|+++. +++...+ ++.+.+. ++. ......++...+..+..+... + ... .
T Consensus 132 -~~~~~~~~~~s~~e~l~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (451)
T PRK11883 132 -PPRWKPGQDQSVGAFFRRR-FGDEVVENLIEPLLSGIYA-GDIDTLSLRATFPQLAQAEDKYGSLLRGMRKALPKEKKK 208 (451)
T ss_pred -CCCCCCCCCcCHHHHHHHh-ccHHHHHHHHHHhhceeec-CChHHccHHHhHHHHHHHHHhcCcHHHHHHhhccccCCC
Confidence 0011123578999999876 6665544 3444332 221 111111222222222111111 0 000 0
Q ss_pred CCCceEEeCCCCChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCcEEEcCEEEECCCC
Q 019351 220 GGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSY 287 (342)
Q Consensus 220 g~~~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~~ 287 (342)
....+.++++|+..+++.|++.+... +|+++++|++|+.+ ++++..+..+|+++.||+||+|++.
T Consensus 209 ~~~~~~~~~~G~~~l~~~l~~~l~~~--~i~~~~~V~~i~~~-~~~~~v~~~~g~~~~~d~vI~a~p~ 273 (451)
T PRK11883 209 TKGVFGTLKGGLQSLIEALEEKLPAG--TIHKGTPVTKIDKS-GDGYEIVLSNGGEIEADAVIVAVPH 273 (451)
T ss_pred CCCceEeeccHHHHHHHHHHHhCcCC--eEEeCCEEEEEEEc-CCeEEEEECCCCEEEcCEEEECCCH
Confidence 12356789999999999999866432 89999999999887 5554333347889999999999864
No 16
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=99.88 E-value=8.9e-22 Score=186.30 Aligned_cols=251 Identities=17% Similarity=0.206 Sum_probs=141.5
Q ss_pred ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCcccchHHHHHhccCCCCCCCCCCCCCcceeccCcchhcc--
Q 019351 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIA-- 82 (342)
Q Consensus 5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-- 82 (342)
.||||||||++||+||.+|+++|++|+|+|+++++||++++++.+ .|.+|.+++++..
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~GG~~~t~~~~--------------------G~~fD~G~~~~~~~~ 61 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPGGCAGTFRRR--------------------GFTFDVGATQVAGLE 61 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCccceeccC--------------------CEEEeecceEEEecC
Confidence 489999999999999999999999999999999999999999764 2666777666543
Q ss_pred ccH-HHHHHhhcCCcceeeEEEcCceE--EEeCC-eEEecCCCcHHHhcCCCCChhhHHHHHHHHHHHhh-------cCC
Q 019351 83 NGA-LVRVLIHTDVTKYLYFKAVDGSF--VYNKG-KVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQD-------YDE 151 (342)
Q Consensus 83 ~~~-l~~~l~~~~~~~~l~~~~~~~~~--~~~~g-~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~-------~~~ 151 (342)
.+. +-+.+.+.++... .+...++.+ .+.+| ..+.++. +.+.+...+...+- .. .+|+..+.+ ...
T Consensus 62 ~~~~~~~~~~~lg~~~~-~~~~~d~~~~~~~~dg~~~~~~~~-d~~~~~~~l~~~~p-~~-~~~~~~~~~~~~~~~~~~~ 137 (492)
T TIGR02733 62 PGGIHARIFRELGIPLP-EAKILDPACAVDLPDGSEPIPLWH-DPDRWQKERERQFP-GS-ERFWQLCSQLHQSNWRFAG 137 (492)
T ss_pred cCCHHHHHHHHcCCCCc-ccccCCCCcEEEECCCceEeeeec-CHHHHHHHHHHHCC-Ch-HHHHHHHHHHHHHHHHHhh
Confidence 222 2233334443311 112233222 22355 3444443 33333221111110 00 011111110 000
Q ss_pred CC----ccc---------------ccccCCCCCcHHHHHHHcC--CChhHHHHHHhhhhcccCCCCCCCchHHHHHHHHH
Q 019351 152 ND----PKT---------------HEGMDLTRVTTRELIAKYG--LDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKL 210 (342)
Q Consensus 152 ~~----~~~---------------~~~~~~~~~s~~~~l~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 210 (342)
.. +.. .....+...|+.+|+++++ -++.++.++...... +...+..........
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~lr~~l~~~~~~-----~~~~~~~~~~~~~~~ 212 (492)
T TIGR02733 138 RDPVLPPRNYWDLLQLVSALRPDTLLTGPLSLLTVADLLRLCGLGDDRRLRRFLDLQLKL-----YSQEDADETAALYGA 212 (492)
T ss_pred cCCCCCCCCHHHHHHHHHhcChhhhhhhhhhhhhHHHHHHHhCCCccHHHHHHHHHHHhh-----hccCChhhhhHHHHH
Confidence 00 000 0001123588899998864 234445444332211 111121111111110
Q ss_pred HHHhhccccCCCceEEeCCCCChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CC-----cEEEcCEEEEC
Q 019351 211 YAESIARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EG-----ETAKCKKVVCD 284 (342)
Q Consensus 211 ~~~~~~~~~g~~~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~-~g-----~~~~a~~vI~~ 284 (342)
....+.. .....++++||++.++++|++.++++|++|+++++|++|..+ ++++.+|.. ++ +++.||+||++
T Consensus 213 ~~~~~~~--~~~G~~~~~GG~~~l~~aL~~~~~~~G~~i~~~~~V~~I~~~-~~~~~gv~~~~~~~~~~~~~~ad~VI~~ 289 (492)
T TIGR02733 213 TVLQMAQ--APHGLWHLHGSMQTLSDRLVEALKRDGGNLLTGQRVTAIHTK-GGRAGWVVVVDSRKQEDLNVKADDVVAN 289 (492)
T ss_pred HHhhccc--cCCCceeecCcHHHHHHHHHHHHHhcCCEEeCCceEEEEEEe-CCeEEEEEEecCCCCceEEEECCEEEEC
Confidence 0011111 112346799999999999999999999999999999999887 665555544 43 57999999999
Q ss_pred CCC
Q 019351 285 PSY 287 (342)
Q Consensus 285 ~~~ 287 (342)
+++
T Consensus 290 ~~~ 292 (492)
T TIGR02733 290 LPP 292 (492)
T ss_pred CCH
Confidence 875
No 17
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=99.86 E-value=5.8e-20 Score=172.14 Aligned_cols=260 Identities=16% Similarity=0.146 Sum_probs=153.8
Q ss_pred cEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCcccchHHHHHhccCCCCCCCCCCCCCcceeccCcchhccc-c
Q 019351 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIAN-G 84 (342)
Q Consensus 6 DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~ 84 (342)
+|+|||||++||+||+.|+++|++|+|+|+++++||+++++... ..+.+|.+++++... .
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~-------------------~g~~~d~G~~~~~~~~~ 61 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGGKVGSWVDG-------------------DGNHIEMGLHVFFGCYA 61 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCceeeeeecC-------------------CCceEeeceEEecCchH
Confidence 58999999999999999999999999999999999999986321 235567777766543 3
Q ss_pred HHHHHHhhcCCcceeeEEEcCceEEEeCCeEEe--------cC-CCcHHHhcCCCCChhhHHHHHHHHH---HHhhcCCC
Q 019351 85 ALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHK--------VP-ATDMEALKSPLMGIFEKRRARKFFI---YVQDYDEN 152 (342)
Q Consensus 85 ~l~~~l~~~~~~~~l~~~~~~~~~~~~~g~~~~--------~~-~~~~~~~~~~~~~~~~k~~~~~~~~---~~~~~~~~ 152 (342)
++.+++.+.++...+.+......+...++.... .| ......++...+++.+|-.+..... ........
T Consensus 62 ~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~l~~~~ls~~dklr~~~~~~~~~~~~~~~~~ 141 (474)
T TIGR02732 62 NLFRLMKKVGAEDNLLLKEHTHTFVNKGGDIGELDFRFATGAPFNGLKAFFTTSQLKWVDKLRNALALGTSPIVRGLVDY 141 (474)
T ss_pred HHHHHHHHcCCccccccccceeEEEcCCCcccccccCCCCCCchhhhHHHhcCCCCCHHHHHHHHHHhhhhHHHhhcccc
Confidence 555666666665544332211112222333221 12 1123445556666655433322211 11100000
Q ss_pred CcccccccCCCCCcHHHHHHHcCCChh-HHHHHHhhhhcccCCCCCCCchHHHHHHHHHHHHhhccccCCCceEEeCCCC
Q 019351 153 DPKTHEGMDLTRVTTRELIAKYGLDDN-TIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGL 231 (342)
Q Consensus 153 ~~~~~~~~~~~~~s~~~~l~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~gG~ 231 (342)
......+...++.|+.+|+++++.++. +..++.+++......+....++...+..+..+ ......+...+++||.
T Consensus 142 ~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~Pll~~~~~~~~~~~Sa~~~~~~~~~~----~~~~~~s~~~~~~g~~ 217 (474)
T TIGR02732 142 DGAMKTIRDLDKISFAEWFLSHGGSLGSIKRMWDPIAYALGFIDCENISARCMLTIFMLF----AAKTEASKLRMLKGSP 217 (474)
T ss_pred chhhhhhhhhccccHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH----HhCCCcceeeeecCCc
Confidence 000001112357999999999988876 44456665532211111111222222222222 1111245667888887
Q ss_pred Ch-HHHHHHHHHHHcCcEEEcCCccceEEEcC--CC--cEEEEEe-CC---cEEEcCEEEECCCCC
Q 019351 232 GE-LPQAFARLSAVYGGTYMLNKPECKVEFDE--EG--KVVGVTS-EG---ETAKCKKVVCDPSYL 288 (342)
Q Consensus 232 ~~-l~~~l~~~~~~~G~~i~~~~~V~~i~~~~--~~--~~~~v~~-~g---~~~~a~~vI~~~~~~ 288 (342)
.. +.+.|.+.+++.|++|+++++|++|..++ ++ ++++|.. +| .++.||+||+|++.+
T Consensus 218 ~~~l~~pl~~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~~~~aD~VVlA~p~~ 283 (474)
T TIGR02732 218 DKYLTKPILEYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKKVIKADAYVAACDVP 283 (474)
T ss_pred chhHHHHHHHHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcceEEECCEEEECCChH
Confidence 76 56679999999999999999999998752 12 2555555 33 458999999998754
No 18
>PLN02612 phytoene desaturase
Probab=99.85 E-value=2.7e-19 Score=170.82 Aligned_cols=256 Identities=14% Similarity=0.112 Sum_probs=152.4
Q ss_pred cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCcccchHHHHHhccCCCCCCCCCCCCCcceeccCcchhccc
Q 019351 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIAN 83 (342)
Q Consensus 4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 83 (342)
..||+|||||++||+||++|+++|++|+|+|+++++||++.++... ..+.+|.+.+++...
T Consensus 93 ~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~gG~~~s~~~~-------------------~G~~~D~G~h~~~g~ 153 (567)
T PLN02612 93 PLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVAAWKDE-------------------DGDWYETGLHIFFGA 153 (567)
T ss_pred CCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCCCcceeeEcC-------------------CCCEEcCCceEEeCC
Confidence 4789999999999999999999999999999999999999987531 124566666655543
Q ss_pred -cHHHHHHhhcCCcceeeEEEcCceEEEe--CCeEEe--cC----CC---cHHHhc-CCCCChhhHHHHHHHHHHHhhcC
Q 019351 84 -GALVRVLIHTDVTKYLYFKAVDGSFVYN--KGKVHK--VP----AT---DMEALK-SPLMGIFEKRRARKFFIYVQDYD 150 (342)
Q Consensus 84 -~~l~~~l~~~~~~~~l~~~~~~~~~~~~--~g~~~~--~~----~~---~~~~~~-~~~~~~~~k~~~~~~~~~~~~~~ 150 (342)
..+.+++.+.++...+.+......+.+. .+.... +| .. ....+. ...+++.++-.+ .........
T Consensus 154 ~~~~~~ll~elG~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~P~~l~~~~~~l~~~~~ls~~~kl~~--~~~~~~~~~ 231 (567)
T PLN02612 154 YPNVQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGIWAILRNNEMLTWPEKIKF--AIGLLPAIV 231 (567)
T ss_pred CchHHHHHHHhCCcccceecccceEEEecCCCCceeeCcCchhcCChhhhhHHHHhcCccCCHHHHHHH--HHhhhHHhc
Confidence 3456667777776555544322222221 222222 11 11 111221 122333332111 011100000
Q ss_pred CCCcccccccCCCCCcHHHHHHHcCCChhHHH-HHHhhhhcccCCCCCCCchHHHHHHHHHHHHhhccccCCCceEEeCC
Q 019351 151 ENDPKTHEGMDLTRVTTRELIAKYGLDDNTID-FIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLY 229 (342)
Q Consensus 151 ~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g 229 (342)
...+ ....+++.|+.+|+++.+.++...+ ++.+++......+....+....+..+..++ ... ..+...++.|
T Consensus 232 ~~~~---~~~~~d~~Sv~e~l~~~~~~~~~~~~~~~~l~~~~~~~~p~~~S~~~~l~~l~~~l---~~~-~gs~~~~~~G 304 (567)
T PLN02612 232 GGQA---YVEAQDGLSVKEWMRKQGVPDRVNDEVFIAMSKALNFINPDELSMQCILIALNRFL---QEK-HGSKMAFLDG 304 (567)
T ss_pred ccch---hhhhcCcCcHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCHHHhhHHHHHHHHHHHH---hcc-CCceEeeecC
Confidence 0000 1113468999999999999987775 555544221111111112222222222221 111 2345566766
Q ss_pred CC-ChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCcEEEcCEEEECCCC
Q 019351 230 GL-GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSY 287 (342)
Q Consensus 230 G~-~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~-~g~~~~a~~vI~~~~~ 287 (342)
+. ..+++.|++.++++|++|+++++|++|..+++++++++++ +|+++.||+||+|++.
T Consensus 305 ~~~~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~v~~~~G~~~~ad~VI~a~p~ 364 (567)
T PLN02612 305 NPPERLCMPIVDHFQSLGGEVRLNSRIKKIELNDDGTVKHFLLTNGSVVEGDVYVSATPV 364 (567)
T ss_pred CchHHHHHHHHHHHHhcCCEEEeCCeeeEEEECCCCcEEEEEECCCcEEECCEEEECCCH
Confidence 64 6789999999988999999999999999864555565665 7778999999999753
No 19
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=99.85 E-value=3.1e-19 Score=167.43 Aligned_cols=254 Identities=15% Similarity=0.141 Sum_probs=146.7
Q ss_pred cEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCcccchHHHHHhccCCCCCCCCCCCCCcceeccCcchhccc-c
Q 019351 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIAN-G 84 (342)
Q Consensus 6 DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~ 84 (342)
+|+|||||++||+||++|+++|++|+|+|+++++||++++.... ..+.+|.+.+++... .
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~-------------------~g~~~d~G~~~~~~~~~ 61 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKVAAWKDE-------------------DGDWYETGLHIFFGAYP 61 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeECC-------------------CCCEEEcCcceeccCCc
Confidence 58999999999999999999999999999999999999886421 124566666655442 3
Q ss_pred HHHHHHhhcCCcceeeEEEcCceEEEe--CCeEEe--cCC--CcHH----Hhc-CCCCChhhHHHHHHHHHHHhhcCCCC
Q 019351 85 ALVRVLIHTDVTKYLYFKAVDGSFVYN--KGKVHK--VPA--TDME----ALK-SPLMGIFEKRRARKFFIYVQDYDEND 153 (342)
Q Consensus 85 ~l~~~l~~~~~~~~l~~~~~~~~~~~~--~g~~~~--~~~--~~~~----~~~-~~~~~~~~k~~~~~~~~~~~~~~~~~ 153 (342)
.+.+++.+.++...+.+......+... ++.... .+. ...+ .+. ...+++.++-.+.. ..........
T Consensus 62 ~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 139 (453)
T TIGR02731 62 NMLQLLKELNIEDRLQWKSHSMIFNQPDKPGTFSRFDFPDIPAPFNGVAAILRNNDMLTWPEKIKFAI--GLLPAIVRGQ 139 (453)
T ss_pred hHHHHHHHcCCccceeecCCceEEecCCCCcceeeccCCCCCCCHHHHHHHhcCcCCCCHHHHHHHHH--HhHHHHhcCc
Confidence 556667767766554443322211111 122221 111 1111 111 11233333221111 1100000000
Q ss_pred cccccccCCCCCcHHHHHHHcCCChhHHH-HHHhhhhcccCCCCCCCchHHHHHHHHHHHHhhccccCCCceEEeCCC-C
Q 019351 154 PKTHEGMDLTRVTTRELIAKYGLDDNTID-FIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYG-L 231 (342)
Q Consensus 154 ~~~~~~~~~~~~s~~~~l~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~gG-~ 231 (342)
+ ....+++.|+.+|+++.++++.+.+ ++.+++......+....+....+..+..+.. .. +.+...+..|+ +
T Consensus 140 ~---~~~~~~~~s~~~~l~~~~~~~~~~~~~~~pl~~~~~~~~p~~~S~~~~~~~l~~~~~--~~--~g~~~~~~~g~~~ 212 (453)
T TIGR02731 140 K---YVEEQDKYTVTEWLRKQGVPERVNDEVFIAMSKALNFINPDELSMTVVLTALNRFLQ--ER--HGSKMAFLDGAPP 212 (453)
T ss_pred c---chhhhccCCHHHHHHHcCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHh--cC--CCCeeEeecCCCh
Confidence 0 1113468999999999999998765 4555442211111101112222222222221 11 12333345554 5
Q ss_pred ChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCc-----EEEcCEEEECCCC
Q 019351 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGE-----TAKCKKVVCDPSY 287 (342)
Q Consensus 232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~-~g~-----~~~a~~vI~~~~~ 287 (342)
..+++.|.+.+++.|++|+++++|++|..++++++++|++ +++ ++.||.||+|++.
T Consensus 213 ~~l~~~l~~~l~~~g~~i~l~~~V~~I~~~~~~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~ 274 (453)
T TIGR02731 213 ERLCQPIVDYITSRGGEVRLNSRLKEIVLNEDGSVKHFVLADGEGQRRFEVTADAYVSAMPV 274 (453)
T ss_pred HHHHHHHHHHHHhcCCEEeCCCeeEEEEECCCCCEEEEEEecCCCCceeEEECCEEEEcCCH
Confidence 7889999999999999999999999998653566767766 454 7999999998764
No 20
>PLN02487 zeta-carotene desaturase
Probab=99.84 E-value=6e-19 Score=166.78 Aligned_cols=261 Identities=18% Similarity=0.163 Sum_probs=156.3
Q ss_pred ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCcccchHHHHHhccCCCCCCCCCCCCCcceeccCcchhccc-
Q 019351 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIAN- 83 (342)
Q Consensus 5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~- 83 (342)
.+|+|||||++||++|+.|+++|++|+|+|+++.+||++.++... ..+.+|.+.+++...
T Consensus 76 ~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG~~~s~~~~-------------------~g~~~e~G~h~~~~~~ 136 (569)
T PLN02487 76 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVGSFVDK-------------------NGNHIEMGLHVFFGCY 136 (569)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCCceeeeeec-------------------CCcEEecceeEecCCc
Confidence 589999999999999999999999999999999999999887421 235567777766543
Q ss_pred cHHHHHHhhcCCcceeeEEEcCceEEEeCCeEEe----cCCC-cH----HHhcCCCCChhhHHHHHHHH---HHHhhcCC
Q 019351 84 GALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHK----VPAT-DM----EALKSPLMGIFEKRRARKFF---IYVQDYDE 151 (342)
Q Consensus 84 ~~l~~~l~~~~~~~~l~~~~~~~~~~~~~g~~~~----~~~~-~~----~~~~~~~~~~~~k~~~~~~~---~~~~~~~~ 151 (342)
.++.+++.+.++...+.+......+...+|.... +|.. .. ..+....+++.+|-.+..-. ..+.....
T Consensus 137 ~~~~~ll~~LGl~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~pl~~~~~~l~~~~Ls~~dklr~~~~l~~~~~~~al~~ 216 (569)
T PLN02487 137 NNLFRLMKKVGADENLLVKDHTHTFVNKGGDVGELDFRFPVGAPLHGIKAFLTTNQLEPYDKARNALALATSPVVRALVD 216 (569)
T ss_pred HHHHHHHHhcCCcccccccccceeEEecCCEEeeeccCCCCCchhhhHHHHHcCCCCCHHHHHhhcccccccchhhhccC
Confidence 3566777777776554433211122222444421 2211 11 33344555544432221000 00000000
Q ss_pred CCcccccccCCCCCcHHHHHHHcCCChhHH-HHHHhhhhcccCCCCCCCchHHHHHHHHHHHHhhccccCCCceEEeCCC
Q 019351 152 NDPKTHEGMDLTRVTTRELIAKYGLDDNTI-DFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYG 230 (342)
Q Consensus 152 ~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~gG 230 (342)
.......+-..++.|+.+|+++++.++... .++.+++...........++...+..+.. +......+...+++||
T Consensus 217 ~~~~~~~~~~~d~~sv~~~l~r~~g~~~~~~~l~dPll~~~~~~~~d~~SA~~~~~vl~~----~~~~~~~~~l~~~~Gg 292 (569)
T PLN02487 217 PDGAMRDIRDLDDISFSDWFTSHGGTRMSIKRMWDPIAYALGFIDCDNISARCMLTIFSL----FATKTEASLLRMLKGS 292 (569)
T ss_pred ccccccccccccCCcHHHHHHHhCCCHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHH----HhhcCCcceeeecCCC
Confidence 000001111346799999999998877544 45555443222121111112222222211 1111123557899999
Q ss_pred CCh-HHHHHHHHHHHcCcEEEcCCccceEEEcC--CC--cEEEEEe--C--CcEEEcCEEEECCCCC
Q 019351 231 LGE-LPQAFARLSAVYGGTYMLNKPECKVEFDE--EG--KVVGVTS--E--GETAKCKKVVCDPSYL 288 (342)
Q Consensus 231 ~~~-l~~~l~~~~~~~G~~i~~~~~V~~i~~~~--~~--~~~~v~~--~--g~~~~a~~vI~~~~~~ 288 (342)
+.. +++.+++.++.+|++|+++++|++|..+. ++ ++++|++ + +.++.||.||+|++.+
T Consensus 293 ~~~~l~~pl~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~~~~~aD~VV~A~p~~ 359 (569)
T PLN02487 293 PDVRLSGPIAKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSKATEKEIVKADAYVAACDVP 359 (569)
T ss_pred chHHHHHHHHHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEecCCCceEEECCEEEECCCHH
Confidence 985 99999999999999999999999998862 22 3677776 3 3468999999998754
No 21
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=99.82 E-value=1.4e-18 Score=161.49 Aligned_cols=241 Identities=13% Similarity=0.196 Sum_probs=145.5
Q ss_pred cccEEEECCCchHHHHHHhhhhC----CCeEEEEcCCCCCCCcCcccchHHHHHhccCCCCCCCCCCCCCcceeccCcch
Q 019351 4 EYDVIVLGTGLKECILSGLLSVD----GLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKF 79 (342)
Q Consensus 4 ~~DViIiG~GiaGl~aA~~L~~~----G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 79 (342)
..+|+|||||++||+||++|++. |.+|+|||+++.+||++.+..... .+|..+.++.+
T Consensus 22 ~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~~~~~~~~~------------------~Gy~~~~G~~~ 83 (576)
T PRK13977 22 NKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGSLDGAGNPE------------------KGYVARGGREM 83 (576)
T ss_pred CCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCCccCccccc------------------CCEEEECCCCc
Confidence 36899999999999999999995 689999999999999998754211 23556666665
Q ss_pred hccccHHHHHHhhc---------CCcceeeEEEcCceE---EE--eCCeEEecCCCcHHHhcCCCCChhhHHHHHHHHHH
Q 019351 80 IIANGALVRVLIHT---------DVTKYLYFKAVDGSF---VY--NKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIY 145 (342)
Q Consensus 80 ~~~~~~l~~~l~~~---------~~~~~l~~~~~~~~~---~~--~~g~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ 145 (342)
......+.+++.+. -..++..+...++.+ .+ .+|..+. ...+.+-. .....++..
T Consensus 84 ~~~y~~l~~ll~~ipsle~~g~sv~dd~~~~~~~~p~~s~~Rl~~~~g~~~d----------~~~~~L~~-k~r~~Ll~l 152 (576)
T PRK13977 84 ENHFECLWDLFRSIPSLEDPGASVLDEFYWFNKDDPNYSKARLIHKRGEILD----------TDKFGLSK-KDRKELLKL 152 (576)
T ss_pred cchHHHHHHHHHhccccCCCCcccccceeeeecCCcccceeeEEcCCCCEEE----------CcCCCCCH-HHHHHHHHH
Confidence 44444566665332 122344444443331 11 1222221 22222212 222333333
Q ss_pred HhhcCCCCcccccccCCCCCcHHHHHHHcCCChhHHHHHHhhhhcccCCCCCCCchHHHHHHHHHHHHhhccccCCCceE
Q 019351 146 VQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYI 225 (342)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 225 (342)
+..-. -.+++.++.||+++..+...+..++....+.. ...++......+.+|++.+......+.+.
T Consensus 153 ~l~~e---------~~Ld~~tI~d~f~~~Ff~t~Fw~~w~t~FaF~-----~whSA~E~rry~~rf~~~~~~l~~~s~l~ 218 (576)
T PRK13977 153 LLTPE---------EKLDDKTIEDWFSPEFFETNFWYYWRTMFAFE-----KWHSALEMRRYMHRFIHHIGGLPDLSGLK 218 (576)
T ss_pred hccCH---------HHhCCcCHHHHHhhcCchhHHHHHHHHHHCCc-----hhhHHHHHHHHHHHHHHhhccCCcccccc
Confidence 32211 13578999999998777665555554443221 12234444444444444333332234444
Q ss_pred EeCCC-CChHHHHHHHHHHHcCcEEEcCCccceEEEc-CC--CcEEEEEe--CCc--E---EEcCEEEECCCC
Q 019351 226 YPLYG-LGELPQAFARLSAVYGGTYMLNKPECKVEFD-EE--GKVVGVTS--EGE--T---AKCKKVVCDPSY 287 (342)
Q Consensus 226 ~~~gG-~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~-~~--~~~~~v~~--~g~--~---~~a~~vI~~~~~ 287 (342)
+.++. +..++..|.++++++|++|+++++|++|..+ ++ ++++++.. +|+ + ..+|.||+|+|-
T Consensus 219 ft~ynqyeSLV~PL~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~~~~~~~I~l~~~DlVivTnGs 291 (576)
T PRK13977 219 FTKYNQYESLVLPLIKYLEDHGVDFQYGTKVTDIDFDITGGKKTATAIHLTRNGKEETIDLTEDDLVFVTNGS 291 (576)
T ss_pred CCCCCchhHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCCceEEEEEEEEeCCceeEEEecCCCEEEEeCCc
Confidence 54443 7899999999999999999999999999874 23 45677765 332 2 457889988763
No 22
>PLN02268 probable polyamine oxidase
Probab=99.80 E-value=5e-19 Score=165.17 Aligned_cols=253 Identities=16% Similarity=0.171 Sum_probs=134.9
Q ss_pred cEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCcccchHHHHHhccCCCCCCCCCCCCCcceeccCcchhcc---
Q 019351 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIA--- 82 (342)
Q Consensus 6 DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~--- 82 (342)
+|+|||||++||+||+.|.++|++|+|||+++++||+++|.... .+.+|+++++++.
T Consensus 2 ~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GGri~t~~~~--------------------g~~~d~G~~~i~~~~~ 61 (435)
T PLN02268 2 SVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGRVHTDYSF--------------------GFPVDMGASWLHGVCN 61 (435)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCceeeecCcC--------------------CcccCCCCeeEeccCC
Confidence 79999999999999999999999999999999999999987532 1344555555532
Q ss_pred ccHHHHHHhhcCCcceeeEEEcCceEEEeC---------CeEEecCCCcHHHhcCCCCChhhHHHHHHHHHHHhhcCCCC
Q 019351 83 NGALVRVLIHTDVTKYLYFKAVDGSFVYNK---------GKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDEND 153 (342)
Q Consensus 83 ~~~l~~~l~~~~~~~~l~~~~~~~~~~~~~---------g~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~ 153 (342)
..++.+++.+.++..+- ...+..+++.. +....+|......+ ...+.++...+.....
T Consensus 62 ~~~~~~l~~~lgl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~-- 128 (435)
T PLN02268 62 ENPLAPLIGRLGLPLYR--TSGDNSVLYDHDLESYALFDMDGNQVPQELVTKV---------GETFERILEETEKVRD-- 128 (435)
T ss_pred CchHHHHHHHhCCceEe--ccCCccccccccccccceecCCCCCCCHHHHHHH---------HHHHHHHHHHHHHHHh--
Confidence 12455666666664321 00111111211 11111111100000 0111222222221110
Q ss_pred cccccccCCCCCcHHHHHHHcCCCh-------hHHHHHHhhhhcccCCCCCCCchHHHHHHHHHHHHhhccccCCCceEE
Q 019351 154 PKTHEGMDLTRVTTRELIAKYGLDD-------NTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIY 226 (342)
Q Consensus 154 ~~~~~~~~~~~~s~~~~l~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 226 (342)
...++.|+.+|++++.-.. ...+++...+... ...+..++...++..+.. ...+.|. ..+
T Consensus 129 ------~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ls~~~~~~----~~~~~g~--~~~ 195 (435)
T PLN02268 129 ------EHEEDMSLLQAISIVLERHPELRLEGLAHEVLQWYLCRM-EGWFAADADTISLKSWDQ----EELLEGG--HGL 195 (435)
T ss_pred ------ccCCCcCHHHHHHHHhhhCcccccchHHHHHHHHHHHHH-HHHhCCChHhCchhhcCC----ccccCCC--cee
Confidence 0125788999876541110 1112222211110 011111221111110000 0011122 235
Q ss_pred eCCCCChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCcEEEcCEEEECCCCC----------Ccc----
Q 019351 227 PLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYL----------PNK---- 291 (342)
Q Consensus 227 ~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~-~g~~~~a~~vI~~~~~~----------~~~---- 291 (342)
..+|+..+++.|++ +++|+++++|++|..+ ++++. |++ +|+++.||+||+|++.. |..
T Consensus 196 ~~~G~~~l~~~l~~-----~~~i~~~~~V~~i~~~-~~~v~-v~~~~g~~~~ad~VIva~P~~~l~~~~i~f~p~lp~~~ 268 (435)
T PLN02268 196 MVRGYDPVINTLAK-----GLDIRLNHRVTKIVRR-YNGVK-VTVEDGTTFVADAAIIAVPLGVLKANIIKFEPELPEWK 268 (435)
T ss_pred ecCCHHHHHHHHhc-----cCceeCCCeeEEEEEc-CCcEE-EEECCCcEEEcCEEEEecCHHHHhcCcceecCCCCHHH
Confidence 67899999998876 6789999999999987 55544 554 67789999999987532 111
Q ss_pred ---cc--ccceeEEEEEEecCCCCC
Q 019351 292 ---VR--KVGRVARAIAIMSHPIPN 311 (342)
Q Consensus 292 ---~~--~~~~~~~~~~i~~~~l~~ 311 (342)
+. .++...+.++...+|.|.
T Consensus 269 ~~ai~~~~~g~~~Kv~l~f~~~fw~ 293 (435)
T PLN02268 269 EEAISDLGVGIENKIALHFDSVFWP 293 (435)
T ss_pred HHHHHhCCccceeEEEEEeCCCCCC
Confidence 01 123456667777888775
No 23
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=99.75 E-value=5.7e-17 Score=138.32 Aligned_cols=254 Identities=16% Similarity=0.151 Sum_probs=137.6
Q ss_pred cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCcccchHHHHHhccCCCCCCCCCCCCCcceeccCcchhcc-
Q 019351 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIA- 82 (342)
Q Consensus 4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~- 82 (342)
..+|+|||+|++||+||+.|+++ ++|+++|++.++||.++|...+- .+ ..+.+|.+-.+...
T Consensus 8 r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlGGha~Tv~~~~--d~--------------~g~~vDtGfiVyn~~ 70 (447)
T COG2907 8 RRKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLGGHANTVAGNT--DG--------------GGVFVDTGFIVYNER 70 (447)
T ss_pred CcceEEEcccchhhhhHHhhhcc-cceEEEeccccccCccceeeccc--cC--------------CceeecceeEEecCC
Confidence 47899999999999999999977 89999999999999999985210 00 11233333222211
Q ss_pred -ccHHHHHHhhcCCcceeeEEEcCceEEEeCCe-EEec-CC-CcHHHhcCCCCChhhHHHHHHHHHHHhhcCCCCccccc
Q 019351 83 -NGALVRVLIHTDVTKYLYFKAVDGSFVYNKGK-VHKV-PA-TDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHE 158 (342)
Q Consensus 83 -~~~l~~~l~~~~~~~~l~~~~~~~~~~~~~g~-~~~~-~~-~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~ 158 (342)
...+.+++...++.....+-++.- -+..|. .+.- +. ...-..+..++.. ....++..+..+........+
T Consensus 71 tYpnl~~Lf~~iGv~t~as~Msf~v--~~d~gglEy~g~tgl~~L~aqk~n~l~p----Rf~~mlaeiLrf~r~~~~~~d 144 (447)
T COG2907 71 TYPNLTRLFKTIGVDTKASFMSFSV--SLDMGGLEYSGLTGLAGLLAQKRNLLRP----RFPCMLAEILRFYRSDLAPSD 144 (447)
T ss_pred CcchHHHHHHHcCCCCcccceeEEE--EecCCceeeccCCCccchhhccccccch----hHHHHHHHHHHHhhhhccchh
Confidence 125566666555543221111100 011111 1111 00 0111112222221 111222222222110111112
Q ss_pred ccCCCCCcHHHHHHHcCCChhHHH-HHHhhhh-cccCC--CCCCCchHHHHHHHHHHHHhhccccCCCceEEeCCCCChH
Q 019351 159 GMDLTRVTTRELIAKYGLDDNTID-FIGHALA-LHRDD--RYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGEL 234 (342)
Q Consensus 159 ~~~~~~~s~~~~l~~~~~~~~~~~-~~~~~~~-l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~gG~~~l 234 (342)
.......++.+||++.+++..+.+ ++.++.+ +|... +...-|+...+ ++......+ ...+.-.|..+.||...+
T Consensus 145 ~~~~~~~tl~~~L~~~~f~~af~e~~l~P~~aaiwstp~~d~~~~pa~~~~-~f~~nhGll-~l~~rp~wrtV~ggS~~y 222 (447)
T COG2907 145 NAGQGDTTLAQYLKQRNFGRAFVEDFLQPLVAAIWSTPLADASRYPACNFL-VFTDNHGLL-YLPKRPTWRTVAGGSRAY 222 (447)
T ss_pred hhcCCCccHHHHHHhcCccHHHHHHhHHHHHHHHhcCcHhhhhhhhHHHHH-HHHhccCce-ecCCCCceeEcccchHHH
Confidence 223357899999999999999876 4445443 33311 11111222222 111111111 121334456678999999
Q ss_pred HHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCcEEEcCEEEECCC
Q 019351 235 PQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPS 286 (342)
Q Consensus 235 ~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~ 286 (342)
++.|+. ..+.+|.++++|..|.+-++| ++.+..+|++-.+|.||+++-
T Consensus 223 vq~laa---~~~~~i~t~~~V~~l~rlPdG-v~l~~~~G~s~rFD~vViAth 270 (447)
T COG2907 223 VQRLAA---DIRGRIETRTPVCRLRRLPDG-VVLVNADGESRRFDAVVIATH 270 (447)
T ss_pred HHHHhc---cccceeecCCceeeeeeCCCc-eEEecCCCCccccceeeeecC
Confidence 998876 336779999999999987444 565666899999999998763
No 24
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=99.73 E-value=3.6e-16 Score=145.35 Aligned_cols=237 Identities=17% Similarity=0.182 Sum_probs=138.1
Q ss_pred HHHHhhhhCCCeEEEEcCCCCCCCcCcccchHHHHHhccCCCCCCCCCCCCCcceeccCcchhccc-cHHHHHHhhcCCc
Q 019351 18 ILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIAN-GALVRVLIHTDVT 96 (342)
Q Consensus 18 ~aA~~L~~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~l~~~l~~~~~~ 96 (342)
+||++|+++|++|+|||+++++||++.|.+.++ | .+.+|.+++.+... ..+.+++.+.++.
T Consensus 1 ~AA~~L~~~G~~v~vlEa~~~~GG~~~t~~~~g----~--------------~~~~d~G~~~~~~~~~~~~~l~~~lgl~ 62 (419)
T TIGR03467 1 SAAVELARAGARVTLFEARPRLGGRARSFEDGG----L--------------GQTIDNGQHVLLGAYTNLLALLRRIGAE 62 (419)
T ss_pred ChHHHHHhCCCceEEEecCCCCCCceeEeecCC----C--------------CcceecCCEEEEcccHHHHHHHHHhCCc
Confidence 589999999999999999999999999987542 1 12356666655543 3455666666665
Q ss_pred ceeeEEEcCceEEEe-CCeE--Ee---cCCCcH---H-HhcCCCCChhhHHHHHHHHHHHhhcCCCCcccccccCCCCCc
Q 019351 97 KYLYFKAVDGSFVYN-KGKV--HK---VPATDM---E-ALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVT 166 (342)
Q Consensus 97 ~~l~~~~~~~~~~~~-~g~~--~~---~~~~~~---~-~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 166 (342)
....+.... ..++. ++.. .. ++. +. . .+....++..++..+.+++..+..... ...+..|
T Consensus 63 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--------~~~~~~s 132 (419)
T TIGR03467 63 PRLQGPRLP-LPFYDPGGRLSRLRLSRLPA-PLHLARGLLRAPGLSWADKLALARALLALRRTRF--------RALDDTT 132 (419)
T ss_pred hhhhcccCC-cceecCCCCceeecCCCCCC-CHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhcCc--------cccCCCC
Confidence 543321111 11111 2221 11 111 11 1 123334444444444433333222110 1236799
Q ss_pred HHHHHHHcCCChhHHH-HHHhhhhcccCCCCCCCchHHHHHHHHHHH-HhhccccCCCceEEeCCCCChHH-HHHHHHHH
Q 019351 167 TRELIAKYGLDDNTID-FIGHALALHRDDRYLNEPALDTVKRMKLYA-ESIARFQGGSPYIYPLYGLGELP-QAFARLSA 243 (342)
Q Consensus 167 ~~~~l~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~gG~~~l~-~~l~~~~~ 243 (342)
+.+|++++++++...+ ++.+++.. .+..+|...........+ ..+........+.+|++|++.+. +.|++.++
T Consensus 133 ~~~~l~~~~~~~~~~~~~~~p~~~~----~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~~~~~~l~~~l~ 208 (419)
T TIGR03467 133 VGDWLQAAGQSERLIERLWEPLLLS----ALNTPPERASAALAAKVLRDSFLAGRAASDLLLPRVPLSELFPEPARRWLD 208 (419)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHH----HcCCCHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCHHHHHHHHHHHHHH
Confidence 9999999877877766 34443321 122233322222222221 11111111345789999988776 44888888
Q ss_pred HcCcEEEcCCccceEEEcCCCcEEEE-EeCCcEEEcCEEEECCCC
Q 019351 244 VYGGTYMLNKPECKVEFDEEGKVVGV-TSEGETAKCKKVVCDPSY 287 (342)
Q Consensus 244 ~~G~~i~~~~~V~~i~~~~~~~~~~v-~~~g~~~~a~~vI~~~~~ 287 (342)
+.|++|++|++|++|+.+ ++++..+ .++|+++.||+||+|++.
T Consensus 209 ~~g~~i~~~~~V~~i~~~-~~~~~~~~~~~g~~~~~d~vi~a~p~ 252 (419)
T TIGR03467 209 SRGGEVRLGTRVRSIEAN-AGGIRALVLSGGETLPADAVVLAVPP 252 (419)
T ss_pred HcCCEEEcCCeeeEEEEc-CCcceEEEecCCccccCCEEEEcCCH
Confidence 889999999999999987 5554433 347788999999998764
No 25
>PLN02568 polyamine oxidase
Probab=99.73 E-value=1.1e-16 Score=151.41 Aligned_cols=86 Identities=20% Similarity=0.191 Sum_probs=61.6
Q ss_pred ceEEeCCCCChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCcEEEcCEEEECCCCC--------------
Q 019351 223 PYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYL-------------- 288 (342)
Q Consensus 223 ~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~~~-------------- 288 (342)
.+...++|++.|++.|++.+. +..|+++++|++|..+ ++.+...+.+|+++.||+||+|.+..
T Consensus 233 ~~~~i~gG~~~Li~~La~~L~--~~~I~ln~~V~~I~~~-~~~v~V~~~dG~~~~aD~VIvTvPl~vL~~~~~~~~i~F~ 309 (539)
T PLN02568 233 EEITIAKGYLSVIEALASVLP--PGTIQLGRKVTRIEWQ-DEPVKLHFADGSTMTADHVIVTVSLGVLKAGIGEDSGLFS 309 (539)
T ss_pred CeEEECCcHHHHHHHHHhhCC--CCEEEeCCeEEEEEEe-CCeEEEEEcCCCEEEcCEEEEcCCHHHHhhccccccceec
Confidence 356788999999999988552 4579999999999987 55544333477789999999987532
Q ss_pred Ccc----c---c--ccceeEEEEEEecCCCCC
Q 019351 289 PNK----V---R--KVGRVARAIAIMSHPIPN 311 (342)
Q Consensus 289 ~~~----~---~--~~~~~~~~~~i~~~~l~~ 311 (342)
|.. . . .++.+.+.+..+.+|.|.
T Consensus 310 P~LP~~k~~Ai~~l~~g~~~Ki~l~f~~~fW~ 341 (539)
T PLN02568 310 PPLPDFKTDAISRLGFGVVNKLFVELSPRPDG 341 (539)
T ss_pred CCCCHHHHHHHHhcCCceeeEEEEEecCCCCC
Confidence 111 0 1 124567777888888764
No 26
>PLN02529 lysine-specific histone demethylase 1
Probab=99.73 E-value=4e-16 Score=150.73 Aligned_cols=263 Identities=14% Similarity=0.146 Sum_probs=144.6
Q ss_pred cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCcccchHHHHHhccCCCCCCCCCCCCCcceeccCcchhccc
Q 019351 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIAN 83 (342)
Q Consensus 4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 83 (342)
..||+|||||++||+||..|+++|++|+|+|+++++||+++|....+ .+...++|+|++|..... .
T Consensus 160 ~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~~t~~~~~------~g~~~~~DlGaswi~g~~--------~ 225 (738)
T PLN02529 160 EGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGGRVYTQKMGR------KGQFAAVDLGGSVITGIH--------A 225 (738)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcCceeeecccC------CCCceEEecCCeeccccc--------c
Confidence 47999999999999999999999999999999999999999886420 000013455555443321 1
Q ss_pred cHHHHHHhhcCCcceeeEEEcCce-EEE-eCCeEEecCCCcHHHhcCCCCChhhHHHHHHHHHHHhhcCCCCcccccccC
Q 019351 84 GALVRVLIHTDVTKYLYFKAVDGS-FVY-NKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMD 161 (342)
Q Consensus 84 ~~l~~~l~~~~~~~~l~~~~~~~~-~~~-~~g~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (342)
.++..+..+.++..+ ..... .++ .+|........ .. ++ ..+..+++.+..+....+ ..
T Consensus 226 npl~~la~~lgl~~~----~~~~~~~~~~~~G~~v~~~~~--~~--------~~-~~~~~~l~~~~~l~~~~~-----~~ 285 (738)
T PLN02529 226 NPLGVLARQLSIPLH----KVRDNCPLYKPDGALVDKEID--SN--------IE-FIFNKLLDKVTELRQIMG-----GF 285 (738)
T ss_pred chHHHHHHHhCCCcc----ccCCCceEEeCCCcCcchhhh--hh--------HH-HHHHHHHHHHHHHHHhcc-----cC
Confidence 134444444443322 11111 122 24543311110 00 00 011111111111110000 01
Q ss_pred CCCCcHHHHHHHcC------CChhHHHHHHhhhhcccCCCCCCCchHHHHHHHHHHHHhhccccCCCceEEeCCCCChHH
Q 019351 162 LTRVTTRELIAKYG------LDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELP 235 (342)
Q Consensus 162 ~~~~s~~~~l~~~~------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~gG~~~l~ 235 (342)
.++.|+.+++++.. +++..++++...+....... ......-.+ ..+... ..+.....+....||+..++
T Consensus 286 ~~d~Sl~~~le~~~~~~~~~~t~~e~~ll~~~~~~le~a~-~~~~s~LSl---~~~~~~-~~~e~~G~~~~i~GG~~~Li 360 (738)
T PLN02529 286 ANDISLGSVLERLRQLYGVARSTEERQLLDWHLANLEYAN-AGCLSDLSA---AYWDQD-DPYEMGGDHCFLAGGNWRLI 360 (738)
T ss_pred ccCCCHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhceec-CCChHHhhh---hHhhhc-cccccCCceEEECCcHHHHH
Confidence 35789999987542 44544444443332111010 011111111 111111 11212344667899999999
Q ss_pred HHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCcEEEcCEEEECCCCC----------Ccc-------cc--ccc
Q 019351 236 QAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYL----------PNK-------VR--KVG 296 (342)
Q Consensus 236 ~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~~~----------~~~-------~~--~~~ 296 (342)
++|++ +..|+++++|++|.++ +++ +.|+++++++.||+||+|.+.. |.. +. .++
T Consensus 361 ~aLA~-----~L~IrLnt~V~~I~~~-~dG-VtV~t~~~~~~AD~VIVTVPlgVLk~~~I~F~PpLP~~K~~AI~rL~yG 433 (738)
T PLN02529 361 NALCE-----GVPIFYGKTVDTIKYG-NDG-VEVIAGSQVFQADMVLCTVPLGVLKKRTIRFEPELPRRKLAAIDRLGFG 433 (738)
T ss_pred HHHHh-----cCCEEcCCceeEEEEc-CCe-EEEEECCEEEEcCEEEECCCHHHHHhccccCCCCCCHHHHHHHHcCCCc
Confidence 99987 5679999999999987 554 4466677789999999997632 211 01 134
Q ss_pred eeEEEEEEecCCCCCC
Q 019351 297 RVARAIAIMSHPIPNT 312 (342)
Q Consensus 297 ~~~~~~~i~~~~l~~~ 312 (342)
.+.+.+..+.+|+|..
T Consensus 434 ~v~KV~L~F~~~FW~~ 449 (738)
T PLN02529 434 LLNKVAMVFPSVFWGE 449 (738)
T ss_pred eeEEEEEEeCCccccC
Confidence 5677888888898854
No 27
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=99.72 E-value=3.5e-16 Score=151.79 Aligned_cols=265 Identities=14% Similarity=0.145 Sum_probs=142.6
Q ss_pred cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCcccchHHHHHhccCCCCCCCCCCCCCcceeccCcchhccc
Q 019351 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIAN 83 (342)
Q Consensus 4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 83 (342)
..+|+|||||++||+||++|++.|++|+|+|+++++||++.+....+ + ...+.+|++..++...
T Consensus 238 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GGr~~t~~~~g----~------------~~~~~~d~Gas~i~g~ 301 (808)
T PLN02328 238 PANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGGRVKTMKMKG----D------------GVVAAADLGGSVLTGI 301 (808)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCCcccccccCC----C------------CcceeccCCceeecCC
Confidence 47899999999999999999999999999999999999999887542 0 0112334444443322
Q ss_pred --cHHHHHHhhcCCcceeeEEEcCceEEEeCCeEEecCCCcHHHhcCCCCChhhHHHHHHHHHHHhhcCCCCcccccccC
Q 019351 84 --GALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMD 161 (342)
Q Consensus 84 --~~l~~~l~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (342)
.++..++.+.++..+. ......+.+.+|..+..... +. .. .....+++.+.++.... .....
T Consensus 302 ~~npl~~l~~~lgl~~~~--~~~~~~~~~~dG~~~~~~~~--~~--------v~-~~f~~lL~~~~klr~~~---~~~~~ 365 (808)
T PLN02328 302 NGNPLGVLARQLGLPLHK--VRDICPLYLPDGKAVDAEID--SK--------IE-ASFNKLLDRVCKLRQAM---IEEVK 365 (808)
T ss_pred CccHHHHHHHHcCCceEe--cCCCceEEeCCCcCcchhhh--hh--------HH-HHHHHHHHHHHHHHHhh---hhccc
Confidence 2344445455543221 01111222335544321100 00 00 11122222221111000 00001
Q ss_pred CCCCcHHHHHHHc------CCChhHHHHHHhhhhcccCCCCCCCchHHHHHHHHHHHHhhccccCCCceEEeCCCCChHH
Q 019351 162 LTRVTTRELIAKY------GLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELP 235 (342)
Q Consensus 162 ~~~~s~~~~l~~~------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~gG~~~l~ 235 (342)
-.+.|+.++++++ ..++..+.++.+.++.. .+........+ .+..+... ..+.....+.+..||+..++
T Consensus 366 ~~D~SLg~~le~~~~~~~~~~~~~e~~Ll~w~lanl---E~~~gs~ls~L-Sl~~w~qd-~~~e~~G~~~~v~GG~~~Li 440 (808)
T PLN02328 366 SVDVNLGTALEAFRHVYKVAEDPQERMLLNWHLANL---EYANASLMSNL-SMAYWDQD-DPYEMGGDHCFIPGGNDTFV 440 (808)
T ss_pred ccCcCHHHHHHHHhhhhccCCCHHHHHHHHHHHHHH---hccchhhHHHH-Hhhhhhcc-ccccCCCeEEEECCcHHHHH
Confidence 1347888887632 23344333333322211 01111111111 11111110 01111234667889999999
Q ss_pred HHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCcEEEcCEEEECCCCC----------Ccc-------cc--ccc
Q 019351 236 QAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYL----------PNK-------VR--KVG 296 (342)
Q Consensus 236 ~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~~~----------~~~-------~~--~~~ 296 (342)
++|++. ..|+++++|++|.+. ++++ .|+++|++++||+||+|.... |.. +. .++
T Consensus 441 ~aLa~~-----L~I~ln~~V~~I~~~-~dgV-~V~~~G~~~~AD~VIvTvPl~vLk~~~I~F~P~LP~~K~~AI~~l~yG 513 (808)
T PLN02328 441 RELAKD-----LPIFYERTVESIRYG-VDGV-IVYAGGQEFHGDMVLCTVPLGVLKKGSIEFYPELPQRKKDAIQRLGYG 513 (808)
T ss_pred HHHHhh-----CCcccCCeeEEEEEc-CCeE-EEEeCCeEEEcCEEEECCCHHHHhhcccccCCCCCHHHHHHHHcCCCc
Confidence 999874 349999999999987 4544 455678899999999987532 111 11 134
Q ss_pred eeEEEEEEecCCCCCC
Q 019351 297 RVARAIAIMSHPIPNT 312 (342)
Q Consensus 297 ~~~~~~~i~~~~l~~~ 312 (342)
...+.++...+++|..
T Consensus 514 ~~~KV~L~F~~~FW~~ 529 (808)
T PLN02328 514 LLNKVALLFPYNFWGG 529 (808)
T ss_pred ceEEEEEEeCCccccC
Confidence 5777888888888864
No 28
>PLN02676 polyamine oxidase
Probab=99.70 E-value=2.9e-16 Score=147.46 Aligned_cols=267 Identities=14% Similarity=0.213 Sum_probs=139.2
Q ss_pred CcccEEEECCCchHHHHHHhhhhCCC-eEEEEcCCCCCCCcCcccchHHHHHhccCCCCCCCCCCCCCcceeccCcchhc
Q 019351 3 EEYDVIVLGTGLKECILSGLLSVDGL-KVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFII 81 (342)
Q Consensus 3 ~~~DViIiG~GiaGl~aA~~L~~~G~-~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 81 (342)
..+||+|||||++||+||++|+++|. +|+|+|+++++||++.+....+ +.+|++.+++.
T Consensus 25 ~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG~~~~~~~~g--------------------~~~d~g~~~~~ 84 (487)
T PLN02676 25 PSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGGRMRKANFAG--------------------VSVELGANWVE 84 (487)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCCcceeecCCC--------------------eEEecCCEEEE
Confidence 35899999999999999999999997 6999999999999999875432 33444444442
Q ss_pred c-----ccHHHHHHhhcCCcceeeEEEcC--ceEEEe-CCeEEecCCCcHHHhcCCCCChhhHHHHHHHHHHHhhcCCCC
Q 019351 82 A-----NGALVRVLIHTDVTKYLYFKAVD--GSFVYN-KGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDEND 153 (342)
Q Consensus 82 ~-----~~~l~~~l~~~~~~~~l~~~~~~--~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~ 153 (342)
. ...+.+++.+.++..+. ...+ ...++. +|+.+ +....+.+. ..+..+..++..+....
T Consensus 85 ~~~~~~~~~~~~l~~~~g~~~~~--~~~~~~~~~~~~~~g~~~--~~~~~~~~~---------~~~~~~~~~~~~~~~~~ 151 (487)
T PLN02676 85 GVGGPESNPIWELANKLKLRTFY--SDFDNLSSNIYKQDGGLY--PKKVVQKSM---------KVADASDEFGENLSISL 151 (487)
T ss_pred cccCcccChHHHHHHhcCCceee--cCccccceeEECCCCCCC--CHHHHHHHH---------HHHHHHHHHHHHHHHhh
Confidence 1 23555666666655431 1111 112221 44333 110000000 01112222211111100
Q ss_pred cccccccCCCCCcH--HHHHHHcCCChhHHHHHHhhhhcccCCCCCCCchHHHHHHHHHHHHhhccccCCCceEEe-CCC
Q 019351 154 PKTHEGMDLTRVTT--RELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYP-LYG 230 (342)
Q Consensus 154 ~~~~~~~~~~~~s~--~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~gG 230 (342)
.....++.++ .+.+..+ .+..........+.. ...+..++...++..+.. ...+..+ |...+... ++|
T Consensus 152 ----~~~~~~~~s~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~S~~~~~~-~~~~~~~-g~~~~~~~~~~G 222 (487)
T PLN02676 152 ----SAKKAVDISILTAQRLFGQ-VPKTPLEMVIDYYNY--DYEFAEPPRVTSLKNTEP-NPTFVDF-GEDEYFVADPRG 222 (487)
T ss_pred ----cccCCCCccHHHHHHHHhh-CCCCHHHHHHHHHhc--cceeccCccccchhhcCc-ccccccC-CCceEEeecCCC
Confidence 0011245565 3334433 111111111111111 011112222111111100 0001111 23333332 689
Q ss_pred CChHHHHHHHHHHHc------CcEEEcCCccceEEEcCCCcEEEEEeCCcEEEcCEEEECCCCC----------Ccc---
Q 019351 231 LGELPQAFARLSAVY------GGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYL----------PNK--- 291 (342)
Q Consensus 231 ~~~l~~~l~~~~~~~------G~~i~~~~~V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~~~----------~~~--- 291 (342)
++.+++.|++..... +.+|++|++|++|..+ ++++.+.+.+|.+++||+||+|.+.. |..
T Consensus 223 ~~~l~~~La~~~~~~~~~~~~~~~I~l~~~V~~I~~~-~~gV~V~~~~G~~~~a~~VIvtvPl~vLk~~~I~F~P~LP~~ 301 (487)
T PLN02676 223 YESLVYYLAEQFLSTKSGKITDPRLKLNKVVREISYS-KNGVTVKTEDGSVYRAKYVIVSVSLGVLQSDLIKFKPPLPDW 301 (487)
T ss_pred HHHHHHHHHhhcccccccccCCCceecCCEeeEEEEc-CCcEEEEECCCCEEEeCEEEEccChHHhccCceEEeCCCCHH
Confidence 999999999865332 3679999999999987 55554333467789999999998632 111
Q ss_pred ----cc--ccceeEEEEEEecCCCCCC
Q 019351 292 ----VR--KVGRVARAIAIMSHPIPNT 312 (342)
Q Consensus 292 ----~~--~~~~~~~~~~i~~~~l~~~ 312 (342)
+. .++...|.+....+|+|..
T Consensus 302 k~~ai~~l~~g~~~Kv~l~f~~~FW~~ 328 (487)
T PLN02676 302 KIEAIYQFDMAVYTKIFLKFPYKFWPS 328 (487)
T ss_pred HHHHHHhCCceeeEEEEEEeCCCCCCC
Confidence 01 1346777888888999864
No 29
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=99.70 E-value=2.5e-16 Score=138.68 Aligned_cols=73 Identities=25% Similarity=0.389 Sum_probs=64.2
Q ss_pred hccccC-CCceEEeCCCCChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCcEEEcCEEEECCCCC
Q 019351 215 IARFQG-GSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYL 288 (342)
Q Consensus 215 ~~~~~g-~~~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~-~g~~~~a~~vI~~~~~~ 288 (342)
++..++ ...|.||+||++.++.++++.++..|++|.+++.|.+|..+ +|++++|.. +|.++.++.||++++.|
T Consensus 246 lg~~d~~~g~~~Yp~GG~Gavs~aia~~~~~~GaeI~tka~Vq~Illd-~gka~GV~L~dG~ev~sk~VvSNAt~~ 320 (561)
T KOG4254|consen 246 LGELDGHKGGWGYPRGGMGAVSFAIAEGAKRAGAEIFTKATVQSILLD-SGKAVGVRLADGTEVRSKIVVSNATPW 320 (561)
T ss_pred HHhhcccCCcccCCCCChhHHHHHHHHHHHhccceeeehhhhhheecc-CCeEEEEEecCCcEEEeeeeecCCchH
Confidence 433334 56788999999999999999999999999999999999998 799999998 89999999999988765
No 30
>PLN03000 amine oxidase
Probab=99.66 E-value=5.2e-15 Score=143.75 Aligned_cols=263 Identities=14% Similarity=0.141 Sum_probs=138.0
Q ss_pred cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCcccchHHHHHhccCCCCCCCCCCCCCcceeccCcchhccc
Q 019351 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIAN 83 (342)
Q Consensus 4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 83 (342)
..||+|||||++||+||..|++.|++|+|+|+++++||++.|....+. ...+.+|++..++...
T Consensus 184 ~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGGRi~T~~~~g~----------------~~~~~~DlGas~i~g~ 247 (881)
T PLN03000 184 KSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGRVYTKKMEAN----------------RVGAAADLGGSVLTGT 247 (881)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCCCcceecccCC----------------CCceEeecCCeEEeCC
Confidence 479999999999999999999999999999999999999999875320 0113344444444332
Q ss_pred c--HHHHHHhhcCCcceeeEEEcCceEEEeCCeEEecCCCcHHHhcCCCCChhhHHHHHHHHHHHhhcCCCCcccccccC
Q 019351 84 G--ALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMD 161 (342)
Q Consensus 84 ~--~l~~~l~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (342)
. ++..++.+.++..+ . ......+.+.+|+.. +......+ + .....+++.+..+...... .
T Consensus 248 ~~npl~~L~~qlgl~l~-~-~~~~~~ly~~~Gk~v--~~~~~~~v--------e-~~fn~lLd~~~~lr~l~~~-----~ 309 (881)
T PLN03000 248 LGNPLGIIARQLGSSLY-K-VRDKCPLYRVDGKPV--DPDVDLKV--------E-VAFNQLLDKASKLRQLMGD-----V 309 (881)
T ss_pred CccHHHHHHHHcCCcee-e-cCCCCeEEEeCCcCC--chhhhhhH--------H-HHHHHHHHHHHHHHHHhcc-----c
Confidence 2 33344444554422 1 111222333466543 21100000 0 0011111111110000000 0
Q ss_pred CCCCcHHHHHHH---c---CCChhHHHHHHhhhhcccCCCCCCCchHHHHHHHHHHHHhhccccCCCceEEeCCCCChHH
Q 019351 162 LTRVTTRELIAK---Y---GLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELP 235 (342)
Q Consensus 162 ~~~~s~~~~l~~---~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~gG~~~l~ 235 (342)
..+.|+.++++. + .+.++.+..+.+.+.... +........+. ...+... ..+.....+...+||++.++
T Consensus 310 ~~D~SLg~aLe~~~~~~g~~~t~e~~~Ll~w~lanLE---~~~as~ls~LS-l~~wdqd-~~~e~~G~~~~v~GG~~~Li 384 (881)
T PLN03000 310 SMDVSLGAALETFRQVSGNDVATEEMGLFNWHLANLE---YANAGLVSKLS-LAFWDQD-DPYDMGGDHCFLPGGNGRLV 384 (881)
T ss_pred CcCCcHHHHHHHHHHHHcccCCHHHHHHHHHHHHHHh---cccccCHHHHH-HHHhhhc-ccccCCCceEEeCCCHHHHH
Confidence 023455443321 1 223322222222121110 10111111111 1111110 01111234567889999999
Q ss_pred HHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCcEEEcCEEEECCCCC----------Ccc-------cc--ccc
Q 019351 236 QAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYL----------PNK-------VR--KVG 296 (342)
Q Consensus 236 ~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~~~----------~~~-------~~--~~~ 296 (342)
++|++. ..|+++++|++|.++ ++++ .|++++++++||+||+|.+.. |.. +. .++
T Consensus 385 eaLa~~-----L~I~Ln~~Vt~I~~~-~dgV-~V~~~~~~~~AD~VIvTVPlgVLk~~~I~F~PpLP~~K~~AI~rL~~G 457 (881)
T PLN03000 385 QALAEN-----VPILYEKTVQTIRYG-SNGV-KVIAGNQVYEGDMVLCTVPLGVLKNGSIKFVPELPQRKLDCIKRLGFG 457 (881)
T ss_pred HHHHhh-----CCcccCCcEEEEEEC-CCeE-EEEECCcEEEeceEEEcCCHHHHhhCceeeCCCCCHHHHHHHHcCCCc
Confidence 999974 359999999999987 5544 456666789999999987642 211 11 134
Q ss_pred eeEEEEEEecCCCCCC
Q 019351 297 RVARAIAIMSHPIPNT 312 (342)
Q Consensus 297 ~~~~~~~i~~~~l~~~ 312 (342)
.+.+.+..+.++.|.+
T Consensus 458 ~l~KViL~Fd~~FW~~ 473 (881)
T PLN03000 458 LLNKVAMLFPYVFWST 473 (881)
T ss_pred ceEEEEEEeCCccccC
Confidence 6788888889999875
No 31
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=99.64 E-value=2.7e-15 Score=133.72 Aligned_cols=46 Identities=28% Similarity=0.380 Sum_probs=43.4
Q ss_pred CcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCcccch
Q 019351 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNL 48 (342)
Q Consensus 3 ~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t~~~ 48 (342)
+..||||||+|++||++|+.|+++|++|+|+|+++++|||+.+.+.
T Consensus 6 ~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GGR~~t~r~ 51 (450)
T COG1231 6 KTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGRSLTARA 51 (450)
T ss_pred CCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCceeEEEec
Confidence 3589999999999999999999999999999999999999998865
No 32
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.62 E-value=4.2e-15 Score=138.40 Aligned_cols=46 Identities=28% Similarity=0.374 Sum_probs=43.5
Q ss_pred cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCcccchH
Q 019351 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLI 49 (342)
Q Consensus 4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t~~~~ 49 (342)
+.+|||||||+|||+||.+|.+.|.+|+|||+++++|||.+|+...
T Consensus 15 ~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGGRI~t~~~~ 60 (501)
T KOG0029|consen 15 KKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGGRIYTFKSE 60 (501)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCceeEEEecC
Confidence 4799999999999999999999999999999999999999998753
No 33
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=99.61 E-value=3.4e-14 Score=124.77 Aligned_cols=229 Identities=16% Similarity=0.171 Sum_probs=140.5
Q ss_pred ccEEEECCCchHHHHHHhhhhCCCe--EEEEcCCCCCCCcCcccchHHHHHhccCCCCCCCCCCCCCcceeccCcchhcc
Q 019351 5 YDVIVLGTGLKECILSGLLSVDGLK--VLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIA 82 (342)
Q Consensus 5 ~DViIiG~GiaGl~aA~~L~~~G~~--V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 82 (342)
.+|+|||||++||++||+|++++-+ |+++|+.+++||+.+|..- .+.+.++.+|+.+..
T Consensus 12 ~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwirS~r~-------------------~ng~ifE~GPrtlrp 72 (491)
T KOG1276|consen 12 MTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIRSDRM-------------------QNGFIFEEGPRTLRP 72 (491)
T ss_pred ceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccceeeeccC-------------------CCceeeccCCCccCc
Confidence 6899999999999999999999855 5669999999999998322 145778888888776
Q ss_pred ccH----HHHHHhhcCCccee-eEEEc----CceEEEeCCeEEecCCCcHHHhcCCCCChhhHHHHHHHHHHHhhcCCCC
Q 019351 83 NGA----LVRVLIHTDVTKYL-YFKAV----DGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDEND 153 (342)
Q Consensus 83 ~~~----l~~~l~~~~~~~~l-~~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~ 153 (342)
-++ ..+++.++++++.+ .+... ...+++..|++..+|.+........+..+ .+.-...|+....+-....
T Consensus 73 ag~~g~~~l~lv~dLGl~~e~~~i~~~~paaknr~l~~~~~L~~vP~sl~~s~~~~l~p~-~k~L~~a~l~e~fr~~~~~ 151 (491)
T KOG1276|consen 73 AGPGGAETLDLVSDLGLEDELQPIDISHPAAKNRFLYVPGKLPTVPSSLVGSLKFSLQPF-GKPLLEAFLRELFRKKVSD 151 (491)
T ss_pred CCcchhHHHHHHHHcCccceeeecCCCChhhhheeeccCcccccCCcccccccccccCcc-cchhHHHHHhhhccccCCC
Confidence 665 66677777776543 22221 23566778999988876444333333222 2112222222111110011
Q ss_pred cccccccCCCCCcHHHHHHHcCCChhHHHH-HHhhhhcccCCCCCCCc----hHHHHHHHHHHHHhhc------------
Q 019351 154 PKTHEGMDLTRVTTRELIAKYGLDDNTIDF-IGHALALHRDDRYLNEP----ALDTVKRMKLYAESIA------------ 216 (342)
Q Consensus 154 ~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~------------ 216 (342)
+..++|+.+|.++. |.+++.+. +.+++ .+.|..++ ....+..+......++
T Consensus 152 -------~~~dESV~sF~~Rr-fG~eV~d~~isp~i----~GiyAgD~~~LSmk~~F~~l~~~Eqk~Gsi~~G~i~~~~~ 219 (491)
T KOG1276|consen 152 -------PSADESVESFARRR-FGKEVADRLISPFI----RGIYAGDPSELSMKSSFGKLWKVEQKHGSIILGTIRAKFA 219 (491)
T ss_pred -------CCccccHHHHHHHh-hhHHHHHHHHHHHh----CccccCChHHhhHHHHHHHHHHHHHhccchhHHHHHHHHH
Confidence 12579999999887 55776654 44444 34444444 2333332222111111
Q ss_pred cc--------------cCCCceEEeCCCCChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCc
Q 019351 217 RF--------------QGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGK 265 (342)
Q Consensus 217 ~~--------------~g~~~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~ 265 (342)
.- ...-+.+-.+||...+++++.+.+.+..+.|.+.-++..+.....++
T Consensus 220 ~~~~k~~e~~~~~~~~~e~~~~~sl~gGle~lP~a~~~~L~~~~v~i~~~~~~~~~sk~~~~~ 282 (491)
T KOG1276|consen 220 RKRTKKAETALSAQAKKEKWTMFSLKGGLETLPKALRKSLGEREVSISLGLKLSGNSKSRSGN 282 (491)
T ss_pred hhcCCCccchhhhhhcccccchhhhhhhHhHhHHHHHHHhcccchhhhcccccccccccccCC
Confidence 00 00001133578899999999999988889999999999887653443
No 34
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.56 E-value=4.5e-14 Score=128.25 Aligned_cols=86 Identities=20% Similarity=0.233 Sum_probs=62.5
Q ss_pred eEEeCCC---CChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCcEEEcCEEEECCCCCCccc----cc--
Q 019351 224 YIYPLYG---LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKV----RK-- 294 (342)
Q Consensus 224 ~~~~~gG---~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~~~~~~~----~~-- 294 (342)
+.++.+| ...+++.|.+.+++.|++|+.+++|++|..+ ++++.+|.++++++.||+||+|+|++...+ ..
T Consensus 136 ~~~~~~g~i~~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~-~~~v~gv~~~~g~i~ad~vV~a~G~~s~~l~~~~~~~~ 214 (358)
T PF01266_consen 136 VFFPEGGVIDPRRLIQALAAEAQRAGVEIRTGTEVTSIDVD-GGRVTGVRTSDGEIRADRVVLAAGAWSPQLLPLLGLDL 214 (358)
T ss_dssp EEETTEEEEEHHHHHHHHHHHHHHTT-EEEESEEEEEEEEE-TTEEEEEEETTEEEEECEEEE--GGGHHHHHHTTTTSS
T ss_pred hcccccccccccchhhhhHHHHHHhhhhccccccccchhhc-ccccccccccccccccceeEecccccceeeeecccccc
Confidence 3455566 6899999999999999999999999999988 777777888766799999999999885331 11
Q ss_pred cceeEEEEEEecCCCC
Q 019351 295 VGRVARAIAIMSHPIP 310 (342)
Q Consensus 295 ~~~~~~~~~i~~~~l~ 310 (342)
.....+..++...+..
T Consensus 215 ~~~~~~~~~~~~~~~~ 230 (358)
T PF01266_consen 215 PLRPVRGQVLVLEPPE 230 (358)
T ss_dssp TEEEEEEEEEEEEGCC
T ss_pred cccccceEEEEEccCC
Confidence 2345555555554443
No 35
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=99.55 E-value=2.5e-13 Score=127.55 Aligned_cols=84 Identities=17% Similarity=0.175 Sum_probs=60.1
Q ss_pred eEEeCCC---CChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCcEEEcCEEEECCCCCCccc-cc---cc
Q 019351 224 YIYPLYG---LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKV-RK---VG 296 (342)
Q Consensus 224 ~~~~~gG---~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~~~~~~~-~~---~~ 296 (342)
.+.+.+| ..+++.+|++.+++.|++|+.+++|++|+.. + .+.|+++++++.||+||+|++.+...+ .. ..
T Consensus 172 ~~~~~~g~i~P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~~--~-~~~v~t~~g~v~A~~VV~Atga~s~~l~~~~~~~~ 248 (460)
T TIGR03329 172 FYSPVAASVQPGLLVRGLRRVALELGVEIHENTPMTGLEEG--Q-PAVVRTPDGQVTADKVVLALNAWMASHFPQFERSI 248 (460)
T ss_pred EEeCCCeEECHHHHHHHHHHHHHHcCCEEECCCeEEEEeeC--C-ceEEEeCCcEEECCEEEEcccccccccChhhcCeE
Confidence 3445555 5688999999999999999999999999742 3 355777767899999999988764321 11 11
Q ss_pred eeEEEEEEecCCCC
Q 019351 297 RVARAIAIMSHPIP 310 (342)
Q Consensus 297 ~~~~~~~i~~~~l~ 310 (342)
.+.+..+++++|++
T Consensus 249 ~p~~~~~~~t~pl~ 262 (460)
T TIGR03329 249 AIVSSDMVITEPAP 262 (460)
T ss_pred EEeccceEecCCCc
Confidence 23445566777765
No 36
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.54 E-value=1.7e-13 Score=120.41 Aligned_cols=62 Identities=21% Similarity=0.290 Sum_probs=51.0
Q ss_pred EeC-CCCChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCcEEEcCEEEECCC--CCC
Q 019351 226 YPL-YGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPS--YLP 289 (342)
Q Consensus 226 ~~~-gG~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~-~g~~~~a~~vI~~~~--~~~ 289 (342)
||. .....++++|.+.+++.|++|+++++|.+|+++ + ....+.+ +|.+++||.+|+|+| .+|
T Consensus 104 Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~-~-~~f~l~t~~g~~i~~d~lilAtGG~S~P 169 (408)
T COG2081 104 FPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKD-D-SGFRLDTSSGETVKCDSLILATGGKSWP 169 (408)
T ss_pred cCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEec-C-ceEEEEcCCCCEEEccEEEEecCCcCCC
Confidence 555 456889999999999999999999999999987 4 3456777 455899999999887 445
No 37
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=99.54 E-value=1.1e-13 Score=127.52 Aligned_cols=57 Identities=14% Similarity=0.180 Sum_probs=48.4
Q ss_pred CChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCcEEEcCEEEECCCCCC
Q 019351 231 LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLP 289 (342)
Q Consensus 231 ~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~~~~ 289 (342)
...++++|.+.+++.|++++++++|+++..+ +++ +.|.++++++.||+||+|+|.++
T Consensus 148 ~~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~-~~~-~~V~~~~g~i~ad~vV~A~G~~s 204 (393)
T PRK11728 148 YRAVAEAMAELIQARGGEIRLGAEVTALDEH-ANG-VVVRTTQGEYEARTLINCAGLMS 204 (393)
T ss_pred HHHHHHHHHHHHHhCCCEEEcCCEEEEEEec-CCe-EEEEECCCEEEeCEEEECCCcch
Confidence 4688899999999999999999999999876 554 45666666899999999999875
No 38
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=99.53 E-value=1.1e-13 Score=125.22 Aligned_cols=58 Identities=24% Similarity=0.273 Sum_probs=48.8
Q ss_pred CChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCcE-EEcCEEEECCCCCC
Q 019351 231 LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGET-AKCKKVVCDPSYLP 289 (342)
Q Consensus 231 ~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~-~g~~-~~a~~vI~~~~~~~ 289 (342)
+..++.+|++.++++|+++++|++|+.|+++ +++++.+.+ +|++ ++|+.||.|+|...
T Consensus 152 ~~~~t~~l~e~a~~~g~~i~ln~eV~~i~~~-~dg~~~~~~~~g~~~~~ak~Vin~AGl~A 211 (429)
T COG0579 152 PGELTRALAEEAQANGVELRLNTEVTGIEKQ-SDGVFVLNTSNGEETLEAKFVINAAGLYA 211 (429)
T ss_pred HHHHHHHHHHHHHHcCCEEEecCeeeEEEEe-CCceEEEEecCCcEEEEeeEEEECCchhH
Confidence 6789999999999999999999999999987 443565665 5655 99999999998654
No 39
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=99.53 E-value=9.3e-13 Score=117.66 Aligned_cols=46 Identities=20% Similarity=0.454 Sum_probs=42.2
Q ss_pred cccEEEECCCchHHHHHHhhhhCC-CeEEEEcCCCCCCCcCcccchH
Q 019351 4 EYDVIVLGTGLKECILSGLLSVDG-LKVLHMDRNDYYGGESSSLNLI 49 (342)
Q Consensus 4 ~~DViIiG~GiaGl~aA~~L~~~G-~~V~vlE~~~~~GG~~~t~~~~ 49 (342)
...|+|||||+|||+||.+|-+.| .+|+|+|+.+++|||.+|+.+.
T Consensus 21 ~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGRI~ti~~~ 67 (498)
T KOG0685|consen 21 NAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGRIHTIPFA 67 (498)
T ss_pred CceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCceEeeEEcC
Confidence 467999999999999999999777 6899999999999999999764
No 40
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.52 E-value=5e-14 Score=128.57 Aligned_cols=61 Identities=18% Similarity=0.231 Sum_probs=45.9
Q ss_pred EEeCC-CCChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCcEEEcCEEEECCC
Q 019351 225 IYPLY-GLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPS 286 (342)
Q Consensus 225 ~~~~g-G~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~-~g~~~~a~~vI~~~~ 286 (342)
.||.- -...+.+.|.+.++++|++|+++++|++|..+ ++++..|.+ +++++.||+||+|+|
T Consensus 101 ~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~-~~~~f~v~~~~~~~~~a~~vILAtG 163 (409)
T PF03486_consen 101 VFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKK-EDGVFGVKTKNGGEYEADAVILATG 163 (409)
T ss_dssp EEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEE-TTEEEEEEETTTEEEEESEEEE---
T ss_pred ECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeec-CCceeEeeccCcccccCCEEEEecC
Confidence 46644 35678899999999999999999999999987 677788888 889999999999976
No 41
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=99.51 E-value=1.1e-13 Score=125.76 Aligned_cols=251 Identities=18% Similarity=0.187 Sum_probs=132.3
Q ss_pred cEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCcccchHHHHHhccCCCCCCCCCCCCCcceeccCcchhc-ccc
Q 019351 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFII-ANG 84 (342)
Q Consensus 6 DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~ 84 (342)
.|+|+|||++||+||++|+++|++|+|+|+++++||.+.++...+ ....+.+-++|. ...
T Consensus 2 rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk~~s~~~~d-------------------g~~~E~glh~f~~~Y~ 62 (485)
T COG3349 2 RVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGKVASWRDSD-------------------GNHVEHGLHVFFGCYY 62 (485)
T ss_pred eEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCceeeeeecCC-------------------CCeeeeeeEEechhHH
Confidence 699999999999999999999999999999999999999987531 123334433333 334
Q ss_pred HHHHHHhhcCCcceeeEEEcCceEEEe---CCeEEecCC-------Cc-HHHhcCCCCChhhHHHHHHHHHHHhhcCCCC
Q 019351 85 ALVRVLIHTDVTKYLYFKAVDGSFVYN---KGKVHKVPA-------TD-MEALKSPLMGIFEKRRARKFFIYVQDYDEND 153 (342)
Q Consensus 85 ~l~~~l~~~~~~~~l~~~~~~~~~~~~---~g~~~~~~~-------~~-~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~ 153 (342)
+++.++.+......+.+......+.-. .|.+-++.. .. ...+....+ ..+...+|.--......
T Consensus 63 n~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~p~p~~~~~~~l~~~~~---~~~~~~~~~~~l~~~~~-- 137 (485)
T COG3349 63 NLLTLLKELPIEDRLQLREHTKTFVGSGTRPGAIGRFARPDAPQPTNGLKAFLRLPQL---PRREKIRFVLRLGDAPI-- 137 (485)
T ss_pred HHHHHhhhCCchheeehHhhhhhhcccCCCCCcccccccCCCCCcchhhhhhhhcccc---CHHHHhHHhhccccccc--
Confidence 777777777666544433322222111 222211111 10 111222212 11222222211111100
Q ss_pred cccccccCCCCCcHHHHHHHcCCChhHHH-HHHh-hhhcc--cCCCCCCCchHHHHHHHHHHHHhhccccCCCceEEeCC
Q 019351 154 PKTHEGMDLTRVTTRELIAKYGLDDNTID-FIGH-ALALH--RDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLY 229 (342)
Q Consensus 154 ~~~~~~~~~~~~s~~~~l~~~~~~~~~~~-~~~~-~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g 229 (342)
.+..-..++++.|+.||+++.+.+..... .+.+ ..++. ...+. ++...+..+..+. +... +.+-....++
T Consensus 138 g~~~~~~eld~~s~~d~l~~~g~~~~~~k~~~~~~~~~l~f~~~e~~---sa~~~lt~~~~~~--~~~~-~~~i~~~~~g 211 (485)
T COG3349 138 GADRSLRELDKISFADWLKEKGAREGAYKAAFAPIALALTFIDPEGC---SARFFLTILNLFL--IVTL-EASILRNLRG 211 (485)
T ss_pred hhHHHHHHHhcccHHHHHHHhCCCchhHHHHHHHHHHhhcccCcccC---cchhHHHHHHHHH--Hhcc-CcchhhhhcC
Confidence 01112235689999999999776655432 2222 12221 11111 1111111221111 1111 2222234455
Q ss_pred C-CChHHHHHHHHHHHcCcEEEcCCccceEEEcC---CCcEEEEEeCCcE---EEcCEEEECCC
Q 019351 230 G-LGELPQAFARLSAVYGGTYMLNKPECKVEFDE---EGKVVGVTSEGET---AKCKKVVCDPS 286 (342)
Q Consensus 230 G-~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~---~~~~~~v~~~g~~---~~a~~vI~~~~ 286 (342)
+ ...+...+.++..+.|.+++...+|+.|..+. +.+++++...+.. +.++.++.+.+
T Consensus 212 ~~~E~~~~p~~~yi~~~G~~v~~~~pv~~l~l~~~~~~~~~~g~~~~~~~~e~~~~~~~~~~~~ 275 (485)
T COG3349 212 SPDEVLLQPWTEYIPERGRKVHADYPVKELDLDGARGLAKVTGGDVTGPEQEQQAALAVVDAFA 275 (485)
T ss_pred CCcceeeehhhhhccccCceeeccceeeeeeccccccccceEeeeecCcceEeeehhhhhcccc
Confidence 5 44566677888888999999999999998763 3345666554432 33444444443
No 42
>PLN02976 amine oxidase
Probab=99.51 E-value=5.4e-13 Score=133.88 Aligned_cols=44 Identities=20% Similarity=0.304 Sum_probs=41.5
Q ss_pred cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCcccc
Q 019351 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLN 47 (342)
Q Consensus 4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t~~ 47 (342)
..||+|||||++|+++|+.|+++|++|+|||+++.+||++.+..
T Consensus 693 ~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vGGri~t~~ 736 (1713)
T PLN02976 693 RKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGGRVYTDR 736 (1713)
T ss_pred CCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCCCceeecc
Confidence 37899999999999999999999999999999999999998764
No 43
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.50 E-value=1e-12 Score=120.69 Aligned_cols=57 Identities=18% Similarity=0.122 Sum_probs=47.3
Q ss_pred CChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCcEEEcCEEEECCCCCC
Q 019351 231 LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLP 289 (342)
Q Consensus 231 ~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~~~~ 289 (342)
...+++.|.+.+++.|++++.+++|++|..+ ++++ .|+++++++.||+||+|+|.+.
T Consensus 144 p~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~-~~~~-~v~~~~~~i~a~~vV~aaG~~~ 200 (380)
T TIGR01377 144 AEKALRALQELAEAHGATVRDGTKVVEIEPT-ELLV-TVKTTKGSYQANKLVVTAGAWT 200 (380)
T ss_pred HHHHHHHHHHHHHHcCCEEECCCeEEEEEec-CCeE-EEEeCCCEEEeCEEEEecCcch
Confidence 4578889999999999999999999999876 5554 4666666899999999998774
No 44
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=99.50 E-value=1.8e-12 Score=123.78 Aligned_cols=60 Identities=15% Similarity=0.052 Sum_probs=49.9
Q ss_pred CChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe----CC--cEEEcCEEEECCCCCCcc
Q 019351 231 LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EG--ETAKCKKVVCDPSYLPNK 291 (342)
Q Consensus 231 ~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~----~g--~~~~a~~vI~~~~~~~~~ 291 (342)
...++.++++.|+++|++++++++|++|..+ ++++++|++ ++ .+|.|++||+|+|.|.+.
T Consensus 148 p~rl~~al~~~A~~~Ga~i~~~t~V~~i~~~-~~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa~~ 213 (546)
T PRK11101 148 PFRLTAANMLDAKEHGAQILTYHEVTGLIRE-GDTVCGVRVRDHLTGETQEIHAPVVVNAAGIWGQH 213 (546)
T ss_pred HHHHHHHHHHHHHhCCCEEEeccEEEEEEEc-CCeEEEEEEEEcCCCcEEEEECCEEEECCChhHHH
Confidence 4578888999999999999999999999887 677776664 23 479999999999998643
No 45
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=99.46 E-value=2e-13 Score=127.16 Aligned_cols=64 Identities=11% Similarity=0.196 Sum_probs=48.0
Q ss_pred chHHHHHHhhhhCCCeEEEEcCCCCCCCcCcccchHHHHHhccCCCCCCCCCCCCCcceeccCcchhccc-cHHHHHHhh
Q 019351 14 LKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIAN-GALVRVLIH 92 (342)
Q Consensus 14 iaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~l~~~l~~ 92 (342)
+|||+||++|+++|++|+|||+++++||+++|.+.+. ..+.+|.+++.+... ..+.+++.+
T Consensus 1 iaGL~aA~~L~~~G~~v~vlEa~~r~GGr~~t~~~~~------------------~g~~~e~G~~~~~~~~~~~~~~~~~ 62 (450)
T PF01593_consen 1 IAGLAAAYYLAKAGYDVTVLEASDRVGGRIRTFRFDN------------------PGFTFELGAHRFFGMYPNLLNLIDE 62 (450)
T ss_dssp HHHHHHHHHHHHTTTEEEEEESSSSSBTTS-EEEETT------------------TTEEEESSS-EEETTSHHHHHHHHH
T ss_pred ChHHHHHHHHHhCCCCEEEEEcCCCCCcceEEecCCc------------------cceeecCCcccccccchhhHHHHHH
Confidence 6899999999999999999999999999999997641 137788888877643 334455554
Q ss_pred cCC
Q 019351 93 TDV 95 (342)
Q Consensus 93 ~~~ 95 (342)
.++
T Consensus 63 l~~ 65 (450)
T PF01593_consen 63 LGL 65 (450)
T ss_dssp HTH
T ss_pred hhh
Confidence 444
No 46
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=99.46 E-value=1.5e-12 Score=121.93 Aligned_cols=59 Identities=14% Similarity=0.155 Sum_probs=50.2
Q ss_pred CChHHHHHHHHHHH----cC--cEEEcCCccceEEEcCCCcEEEEEeCCcEEEcCEEEECCCCCCc
Q 019351 231 LGELPQAFARLSAV----YG--GTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPN 290 (342)
Q Consensus 231 ~~~l~~~l~~~~~~----~G--~~i~~~~~V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~~~~~ 290 (342)
+..++.+|++.+++ .| ++|+++++|++|+.+ +++.+.|+++.+++.||+||+|+|.|..
T Consensus 210 ~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~-~~~~~~V~T~~G~i~A~~VVvaAG~~S~ 274 (497)
T PTZ00383 210 YQKLSESFVKHARRDALVPGKKISINLNTEVLNIERS-NDSLYKIHTNRGEIRARFVVVSACGYSL 274 (497)
T ss_pred HHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEec-CCCeEEEEECCCEEEeCEEEECcChhHH
Confidence 46889999999998 77 789999999999876 5666778887778999999999987753
No 47
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=99.44 E-value=4.7e-12 Score=117.67 Aligned_cols=59 Identities=17% Similarity=0.273 Sum_probs=51.1
Q ss_pred CChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCcEEEcCEEEECCCCCCc
Q 019351 231 LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPN 290 (342)
Q Consensus 231 ~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~~~~~ 290 (342)
...++..|++.++++|++|+++++|++|+.+ +++++.|+++++++.||+||+|+|.+..
T Consensus 200 p~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~-~~~~~~v~t~~~~~~a~~VV~a~G~~~~ 258 (416)
T PRK00711 200 CQLFTQRLAAMAEQLGVKFRFNTPVDGLLVE-GGRITGVQTGGGVITADAYVVALGSYST 258 (416)
T ss_pred HHHHHHHHHHHHHHCCCEEEcCCEEEEEEec-CCEEEEEEeCCcEEeCCEEEECCCcchH
Confidence 4578899999999999999999999999876 6666778887779999999999998753
No 48
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=99.44 E-value=2.2e-12 Score=116.34 Aligned_cols=93 Identities=17% Similarity=0.268 Sum_probs=63.2
Q ss_pred ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCcccchHHHHHhccCCCCCCCCCCCCCcceeccCcchhcccc
Q 019351 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANG 84 (342)
Q Consensus 5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 84 (342)
+||+|||||++||++|++|++.|.+|+|+|+++.+||.+.+.... .....+.+++.+....
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG~~~~~~~~-------------------g~~~~~~G~h~f~t~~ 62 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGGNCYDEVDE-------------------TILFHQYGPHIFHTNN 62 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCceeeecCC-------------------CceEEeecceeEecCc
Confidence 699999999999999999999999999999999999988765322 1122356666665544
Q ss_pred HHH-HHHhhc-CCcceeeEEEcCceEEEeCCeEEecCCC
Q 019351 85 ALV-RVLIHT-DVTKYLYFKAVDGSFVYNKGKVHKVPAT 121 (342)
Q Consensus 85 ~l~-~~l~~~-~~~~~l~~~~~~~~~~~~~g~~~~~~~~ 121 (342)
.-+ +.+.+. +...+ . .....+.+|+.+.+|.+
T Consensus 63 ~~v~~~~~~~~~~~~~---~--~~~~~~~~g~~~~~P~~ 96 (377)
T TIGR00031 63 QYVWDYISPFFELNNY---Q--HRVLALYNNLDLTLPFN 96 (377)
T ss_pred HHHHHHHHhhccccce---e--EEEEEEECCeEEccCCC
Confidence 332 322221 11111 1 12234568999999974
No 49
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=99.44 E-value=4.6e-12 Score=117.38 Aligned_cols=58 Identities=19% Similarity=0.133 Sum_probs=47.2
Q ss_pred ChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCcEEEcCEEEECCCCCC
Q 019351 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLP 289 (342)
Q Consensus 232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~~~~ 289 (342)
..++.+|++.++++|++++.+++|++|+.+++++++.|+++.+++.|++||+|++.+.
T Consensus 183 ~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~g~i~a~~vVvaagg~~ 240 (407)
T TIGR01373 183 DAVAWGYARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTRGFIGAKKVGVAVAGHS 240 (407)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCCceEECCEEEECCChhh
Confidence 4677888999999999999999999997542466777888766899999988776553
No 50
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.44 E-value=5.9e-12 Score=116.42 Aligned_cols=107 Identities=21% Similarity=0.157 Sum_probs=72.1
Q ss_pred ceEEeCCC--CChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeC----Cc--EEEcCEEEECCCCCCcccc-
Q 019351 223 PYIYPLYG--LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSE----GE--TAKCKKVVCDPSYLPNKVR- 293 (342)
Q Consensus 223 ~~~~~~gG--~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~----g~--~~~a~~vI~~~~~~~~~~~- 293 (342)
.+.|+.+= ...|+...++.|..+|++++..++|+++.++ ++ +++|+.. |+ +++|+.||.|+|+|.+.+.
T Consensus 153 a~~y~D~~vddaRLv~~~a~~A~~~Ga~il~~~~v~~~~re-~~-v~gV~~~D~~tg~~~~ira~~VVNAaGpW~d~i~~ 230 (532)
T COG0578 153 AFRYPDGVVDDARLVAANARDAAEHGAEILTYTRVESLRRE-GG-VWGVEVEDRETGETYEIRARAVVNAAGPWVDEILE 230 (532)
T ss_pred eEEEccceechHHHHHHHHHHHHhcccchhhcceeeeeeec-CC-EEEEEEEecCCCcEEEEEcCEEEECCCccHHHHHH
Confidence 45566542 4588889999999999999999999999987 66 8888862 32 4899999999999964421
Q ss_pred ---------ccceeEEEEEEecCCCCCCCCCCeEEEEecCCCCCCcCceEEe
Q 019351 294 ---------KVGRVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDIQKP 336 (342)
Q Consensus 294 ---------~~~~~~~~~~i~~~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~ 336 (342)
...++.++++++-....+. ...++++... .++.+|.+|
T Consensus 231 ~~~~~~~~~~~vr~skGsHlVv~~~~~~----~~a~~~~~~~-d~r~~f~iP 277 (532)
T COG0578 231 MAGLEQSPHIGVRPSKGSHLVVDKKFPI----NQAVINRCRK-DGRIVFAIP 277 (532)
T ss_pred hhcccCCCCccceeccceEEEecccCCC----CceEEeecCC-CCceEEEec
Confidence 1235566666554333221 1235555544 445555555
No 51
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=99.44 E-value=2.6e-12 Score=117.31 Aligned_cols=74 Identities=20% Similarity=0.156 Sum_probs=53.5
Q ss_pred CChHHHHHHHHHHHc-CcEEEcCCccceEEEcCCCcEEEEEeCCcEEEcCEEEECCCCCCccc-c----c-cceeEEEEE
Q 019351 231 LGELPQAFARLSAVY-GGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKV-R----K-VGRVARAIA 303 (342)
Q Consensus 231 ~~~l~~~l~~~~~~~-G~~i~~~~~V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~~~~~~~-~----~-~~~~~~~~~ 303 (342)
...++.+|++++.+. |++|+.+++|++|+. + .|+++++++.||+||+|+|.+...+ . . ...+.|..+
T Consensus 144 p~~~~~~l~~~~~~~~Gv~i~~~t~V~~i~~---~---~v~t~~g~i~a~~VV~A~G~~s~~l~~~~~~~~~~~p~~~q~ 217 (365)
T TIGR03364 144 PREAIPALAAYLAEQHGVEFHWNTAVTSVET---G---TVRTSRGDVHADQVFVCPGADFETLFPELFAASGVRRCKLQM 217 (365)
T ss_pred HHHHHHHHHHHHHhcCCCEEEeCCeEEEEec---C---eEEeCCCcEEeCEEEECCCCChhhhCcchhhccCcceEEEEe
Confidence 457888999888775 999999999999952 2 4666666789999999999875321 1 1 124566676
Q ss_pred EecCCCC
Q 019351 304 IMSHPIP 310 (342)
Q Consensus 304 i~~~~l~ 310 (342)
+.++|+.
T Consensus 218 ~~~~p~~ 224 (365)
T TIGR03364 218 MRTAPQP 224 (365)
T ss_pred eeccCCC
Confidence 6766654
No 52
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=99.43 E-value=2e-13 Score=92.02 Aligned_cols=41 Identities=24% Similarity=0.495 Sum_probs=38.2
Q ss_pred EECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCcccchH
Q 019351 9 VLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLI 49 (342)
Q Consensus 9 IiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t~~~~ 49 (342)
|||||++||++|++|+++|++|+|+|+++++||++.+...+
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~~~ 41 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGRARSFRIP 41 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGGGCEEEET
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCcceeEEEEC
Confidence 89999999999999999999999999999999999988763
No 53
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=99.43 E-value=4.3e-12 Score=116.31 Aligned_cols=58 Identities=26% Similarity=0.271 Sum_probs=47.7
Q ss_pred CChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCcEEEcCEEEECCCCCCc
Q 019351 231 LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPN 290 (342)
Q Consensus 231 ~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~~~~~ 290 (342)
...++..+.+.+.+.|++++++++|++|..+ ++. +.|++++++++||+||+|+|.+..
T Consensus 148 p~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~-~~~-~~v~~~~g~~~a~~vV~A~G~~~~ 205 (376)
T PRK11259 148 PELAIKAHLRLAREAGAELLFNEPVTAIEAD-GDG-VTVTTADGTYEAKKLVVSAGAWVK 205 (376)
T ss_pred HHHHHHHHHHHHHHCCCEEECCCEEEEEEee-CCe-EEEEeCCCEEEeeEEEEecCcchh
Confidence 3567888888888899999999999999876 554 456776668999999999998753
No 54
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=99.42 E-value=3.5e-12 Score=117.39 Aligned_cols=84 Identities=26% Similarity=0.277 Sum_probs=61.4
Q ss_pred EEeCCC---CChHHHHHHHHHHHcC-cEEEcCCccceEEEcCCCcEEEEEeCCcEEEcCEEEECCCCCCccc-------c
Q 019351 225 IYPLYG---LGELPQAFARLSAVYG-GTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKV-------R 293 (342)
Q Consensus 225 ~~~~gG---~~~l~~~l~~~~~~~G-~~i~~~~~V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~~~~~~~-------~ 293 (342)
+++..| +..++.+|++.++++| ..+..+++|..++.+ . +.+.|.++++++.||+||+|+|.+...+ .
T Consensus 146 ~~~~~~~~~p~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~-~-~~~~v~t~~g~i~a~~vv~a~G~~~~~l~~~~~~~~ 223 (387)
T COG0665 146 FDPTGGHLDPRLLTRALAAAAEELGVVIIEGGTPVTSLERD-G-RVVGVETDGGTIEADKVVLAAGAWAGELAATLGELP 223 (387)
T ss_pred ecCCCCcCCHHHHHHHHHHHHHhcCCeEEEccceEEEEEec-C-cEEEEEeCCccEEeCEEEEcCchHHHHHHHhcCCCc
Confidence 344455 4688999999999999 677779999999875 4 6788888777799999999999874321 1
Q ss_pred ccceeEEEEEEecCCCC
Q 019351 294 KVGRVARAIAIMSHPIP 310 (342)
Q Consensus 294 ~~~~~~~~~~i~~~~l~ 310 (342)
....+.+..++.++|..
T Consensus 224 ~~~~p~~~~~~~~~~~~ 240 (387)
T COG0665 224 LPLRPVRGQALTTEPPE 240 (387)
T ss_pred CccccccceEEEecCCC
Confidence 12345566666666554
No 55
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=99.42 E-value=5.5e-12 Score=116.96 Aligned_cols=59 Identities=17% Similarity=0.166 Sum_probs=46.3
Q ss_pred CChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeC-----CcEEEcCEEEECCCCCCc
Q 019351 231 LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSE-----GETAKCKKVVCDPSYLPN 290 (342)
Q Consensus 231 ~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~-----g~~~~a~~vI~~~~~~~~ 290 (342)
...++.+|.+.+++.|++++++++|++|+.+ ++.+...+.+ +.+++||+||+|+|.+..
T Consensus 196 ~~~~~~~l~~~a~~~G~~i~~~~~V~~i~~~-~~~~~v~~~~~~~~~~~~i~a~~vV~a~G~~s~ 259 (410)
T PRK12409 196 IHKFTTGLAAACARLGVQFRYGQEVTSIKTD-GGGVVLTVQPSAEHPSRTLEFDGVVVCAGVGSR 259 (410)
T ss_pred HHHHHHHHHHHHHhCCCEEEcCCEEEEEEEe-CCEEEEEEEcCCCCccceEecCEEEECCCcChH
Confidence 3467889999999999999999999999876 5554433222 237999999999998853
No 56
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=99.40 E-value=3.3e-12 Score=108.58 Aligned_cols=97 Identities=15% Similarity=0.286 Sum_probs=69.9
Q ss_pred cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCcccchHHHHHhccCCCCCCCCCCCCCcceeccCcchhccc
Q 019351 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIAN 83 (342)
Q Consensus 4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 83 (342)
.+|++|||+|++|++.|..|++.|++|+|+||++.+||.+.+...+. .+......+|++|+.+
T Consensus 1 ~fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGNaYde~d~~-----------------tGIlvHkYGpHIFHT~ 63 (374)
T COG0562 1 MFDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNAYDEADDQ-----------------TGILVHKYGPHIFHTD 63 (374)
T ss_pred CCcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCccccccCCC-----------------CCeEEeeccCceeecC
Confidence 37999999999999999999999999999999999999998775421 1234456789999887
Q ss_pred cHHHHHHhhcCCcceeeEEEcCce-EEEeCCeEEecCCC
Q 019351 84 GALVRVLIHTDVTKYLYFKAVDGS-FVYNKGKVHKVPAT 121 (342)
Q Consensus 84 ~~l~~~l~~~~~~~~l~~~~~~~~-~~~~~g~~~~~~~~ 121 (342)
++-+.... ..+.||...... ....+|..+.+|-+
T Consensus 64 ~~~Vwdyv----~~F~e~~~Y~hrVla~~ng~~~~lP~n 98 (374)
T COG0562 64 NKRVWDYV----NQFTEFNPYQHRVLALVNGQLYPLPFN 98 (374)
T ss_pred chHHHHHH----hhhhhhhhhccceeEEECCeeeecccc
Confidence 74443222 223333332222 23458999999864
No 57
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=99.40 E-value=1.1e-11 Score=116.74 Aligned_cols=59 Identities=25% Similarity=0.317 Sum_probs=48.1
Q ss_pred CCCCChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeC-----CcEEEcCEEEECCCC
Q 019351 228 LYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSE-----GETAKCKKVVCDPSY 287 (342)
Q Consensus 228 ~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~-----g~~~~a~~vI~~~~~ 287 (342)
.++...++..|.+.+++.|++|+++++|++|..+ ++++++|.+. ...++|+.||+|+|-
T Consensus 127 ~g~g~~l~~~l~~~~~~~gv~i~~~t~v~~l~~~-~g~v~gv~~~~~~g~~~~i~a~~VIlAtGg 190 (466)
T PRK08274 127 WGGGKALVNALYRSAERLGVEIRYDAPVTALELD-DGRFVGARAGSAAGGAERIRAKAVVLAAGG 190 (466)
T ss_pred cCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEec-CCeEEEEEEEccCCceEEEECCEEEECCCC
Confidence 3445678889999999999999999999999886 7788877652 246899999999873
No 58
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=99.38 E-value=1.7e-11 Score=104.86 Aligned_cols=58 Identities=17% Similarity=0.208 Sum_probs=46.1
Q ss_pred ChHHHHHHHHHHHcCcEEEcCCccceEEEcC-CCcEEEEEe-CCcEEEcCEEEECCCCCC
Q 019351 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDE-EGKVVGVTS-EGETAKCKKVVCDPSYLP 289 (342)
Q Consensus 232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~-~~~~~~v~~-~g~~~~a~~vI~~~~~~~ 289 (342)
.+-..+|...++++|+.++.+..|+.++..+ ++..+.|.| +|..+.|+++|+|+|.|.
T Consensus 153 ~kslk~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi 212 (399)
T KOG2820|consen 153 AKSLKALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWI 212 (399)
T ss_pred HHHHHHHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHH
Confidence 4567788889999999999999999987532 344455555 787899999999999874
No 59
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=99.38 E-value=1.5e-11 Score=114.34 Aligned_cols=56 Identities=18% Similarity=0.248 Sum_probs=46.2
Q ss_pred hHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCcEEEcCEEEECCCCCC
Q 019351 233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLP 289 (342)
Q Consensus 233 ~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~~~~ 289 (342)
.+-+.|.+.+++.|++|+.+++|+++..+ ++++.+++++++++.|+.||.|.|..+
T Consensus 109 ~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~-~g~v~~v~~~g~~i~A~~VI~A~G~~s 164 (428)
T PRK10157 109 KFDAWLMEQAEEAGAQLITGIRVDNLVQR-DGKVVGVEADGDVIEAKTVILADGVNS 164 (428)
T ss_pred HHHHHHHHHHHHCCCEEECCCEEEEEEEe-CCEEEEEEcCCcEEECCEEEEEeCCCH
Confidence 34556777788889999999999999876 677767777888999999999998763
No 60
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=99.35 E-value=9.9e-12 Score=121.77 Aligned_cols=64 Identities=20% Similarity=0.170 Sum_probs=50.2
Q ss_pred eEEeCCC---CChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeC-CcEEEcCEEEECCCCCCc
Q 019351 224 YIYPLYG---LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSE-GETAKCKKVVCDPSYLPN 290 (342)
Q Consensus 224 ~~~~~gG---~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~-g~~~~a~~vI~~~~~~~~ 290 (342)
++++.+| ...++.+|.+.+++ |++++.+++|++|+.+ ++++. |.++ +..+.||+||+|+|.+..
T Consensus 397 ~~~p~~G~v~p~~l~~aL~~~a~~-Gv~i~~~~~V~~i~~~-~~~~~-v~t~~g~~~~ad~VV~A~G~~s~ 464 (662)
T PRK01747 397 IFYPQGGWLCPAELCRALLALAGQ-QLTIHFGHEVARLERE-DDGWQ-LDFAGGTLASAPVVVLANGHDAA 464 (662)
T ss_pred EEeCCCCeeCHHHHHHHHHHhccc-CcEEEeCCEeeEEEEe-CCEEE-EEECCCcEEECCEEEECCCCCcc
Confidence 3455555 45889999999988 9999999999999876 55544 6664 445789999999998753
No 61
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=99.34 E-value=1.2e-11 Score=117.28 Aligned_cols=44 Identities=32% Similarity=0.483 Sum_probs=40.2
Q ss_pred CCCcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCc
Q 019351 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS 44 (342)
Q Consensus 1 m~~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~ 44 (342)
|++.+||+|||||++|+++|+.|+++|++|+|+|+++..+|.++
T Consensus 3 ~~~~~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d~~~GtS~ 46 (508)
T PRK12266 3 MMETYDLLVIGGGINGAGIARDAAGRGLSVLLCEQDDLASATSS 46 (508)
T ss_pred CCCcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCccc
Confidence 56679999999999999999999999999999999988777664
No 62
>PRK10015 oxidoreductase; Provisional
Probab=99.34 E-value=4.3e-11 Score=111.18 Aligned_cols=55 Identities=13% Similarity=0.124 Sum_probs=45.2
Q ss_pred hHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCcEEEcCEEEECCCCC
Q 019351 233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYL 288 (342)
Q Consensus 233 ~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~~~ 288 (342)
.+-+.|.+.+++.|++++.+++|+.+..+ ++++.++.+++.+++|+.||.|.|..
T Consensus 109 ~fd~~L~~~a~~~Gv~i~~~~~V~~i~~~-~~~v~~v~~~~~~i~A~~VI~AdG~~ 163 (429)
T PRK10015 109 RLDPWLMEQAEQAGAQFIPGVRVDALVRE-GNKVTGVQAGDDILEANVVILADGVN 163 (429)
T ss_pred HHHHHHHHHHHHcCCEEECCcEEEEEEEe-CCEEEEEEeCCeEEECCEEEEccCcc
Confidence 34455777788889999999999999876 66777777777789999999998865
No 63
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=99.33 E-value=4.2e-11 Score=112.43 Aligned_cols=66 Identities=12% Similarity=0.048 Sum_probs=49.3
Q ss_pred EEeCCC---CChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEE--e-CC--cEEEcCEEEECCCCCCc
Q 019351 225 IYPLYG---LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVT--S-EG--ETAKCKKVVCDPSYLPN 290 (342)
Q Consensus 225 ~~~~gG---~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~--~-~g--~~~~a~~vI~~~~~~~~ 290 (342)
+.|.+| +..++.+|++.+++.|++|+++++|++|+.++++.+...+ + ++ .++.||+||+|+|.+..
T Consensus 168 ~~p~~g~Vdp~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v~v~~~~~~~g~~~~i~A~~VV~AAG~~s~ 241 (483)
T TIGR01320 168 WAAEGTDVDFGALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGSWTVTVKNTRTGGKRTLNTRFVFVGAGGGAL 241 (483)
T ss_pred EeCCCEEECHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCeEEEEEeeccCCceEEEECCEEEECCCcchH
Confidence 345554 5789999999999999999999999999875233333221 2 23 36999999999998853
No 64
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=99.33 E-value=3.9e-11 Score=116.09 Aligned_cols=76 Identities=24% Similarity=0.249 Sum_probs=56.7
Q ss_pred CChHHHHHHHHHHHcCcEEEcCCccceEEEcC-CCcEEEEEe----CCc--EEEcCEEEECCCCCCcccc-------c-c
Q 019351 231 LGELPQAFARLSAVYGGTYMLNKPECKVEFDE-EGKVVGVTS----EGE--TAKCKKVVCDPSYLPNKVR-------K-V 295 (342)
Q Consensus 231 ~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~-~~~~~~v~~----~g~--~~~a~~vI~~~~~~~~~~~-------~-~ 295 (342)
...++.+|++.++++|++++.+++|++|..++ ++++++|+. +++ ++.||.||+|+|.|.+.+. . .
T Consensus 231 p~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaws~~l~~~~g~~~~~~ 310 (627)
T PLN02464 231 DSRLNVALACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVNAAGPFCDEVRKMADGKAKPM 310 (627)
T ss_pred HHHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEECCCHhHHHHHHhccCcCCCc
Confidence 56889999999999999999999999998753 356666553 344 6899999999999854321 1 1
Q ss_pred ceeEEEEEEec
Q 019351 296 GRVARAIAIMS 306 (342)
Q Consensus 296 ~~~~~~~~i~~ 306 (342)
..+.++++++.
T Consensus 311 I~p~kG~hlvl 321 (627)
T PLN02464 311 ICPSSGVHIVL 321 (627)
T ss_pred eEeeeeEEEec
Confidence 34667776664
No 65
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.33 E-value=9.6e-12 Score=117.94 Aligned_cols=59 Identities=15% Similarity=0.093 Sum_probs=46.9
Q ss_pred CChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CC----cEEEcCEEEECCCCCCcc
Q 019351 231 LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EG----ETAKCKKVVCDPSYLPNK 291 (342)
Q Consensus 231 ~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~-~g----~~~~a~~vI~~~~~~~~~ 291 (342)
...++..++..++++|++++.+++|+++..+ ++ .+.|++ ++ .+++|+.||.|+|.|.+.
T Consensus 154 ~~rl~~~l~~~a~~~Ga~i~~~~~V~~i~~~-~~-~~~v~~~~~~g~~~~i~a~~VVnAaG~wa~~ 217 (502)
T PRK13369 154 DARLVVLNALDAAERGATILTRTRCVSARRE-GG-LWRVETRDADGETRTVRARALVNAAGPWVTD 217 (502)
T ss_pred HHHHHHHHHHHHHHCCCEEecCcEEEEEEEc-CC-EEEEEEEeCCCCEEEEEecEEEECCCccHHH
Confidence 3577888889999999999999999999876 44 345554 32 359999999999998643
No 66
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=99.32 E-value=1.1e-10 Score=109.81 Aligned_cols=66 Identities=15% Similarity=0.103 Sum_probs=48.6
Q ss_pred EEeCCC---CChHHHHHHHHHHHcC-cEEEcCCccceEEEcCCCcEEEEE--e-CCc--EEEcCEEEECCCCCCc
Q 019351 225 IYPLYG---LGELPQAFARLSAVYG-GTYMLNKPECKVEFDEEGKVVGVT--S-EGE--TAKCKKVVCDPSYLPN 290 (342)
Q Consensus 225 ~~~~gG---~~~l~~~l~~~~~~~G-~~i~~~~~V~~i~~~~~~~~~~v~--~-~g~--~~~a~~vI~~~~~~~~ 290 (342)
+.|.+| +..++++|++.+++.| ++|+++++|++|+.++++.+...+ + +|. ++.|++||+|+|.+..
T Consensus 173 ~~p~~g~Vd~~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~~~v~~~~~~~G~~~~i~A~~VVvaAGg~s~ 247 (494)
T PRK05257 173 RIEIGTDVNFGALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGSWTVTVKDLKTGEKRTVRAKFVFIGAGGGAL 247 (494)
T ss_pred EcCCceEECHHHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCCCEEEEEEEcCCCceEEEEcCEEEECCCcchH
Confidence 344444 5689999999999887 799999999999875344343222 2 243 6999999999988753
No 67
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=99.30 E-value=2.7e-11 Score=112.04 Aligned_cols=79 Identities=19% Similarity=0.165 Sum_probs=62.4
Q ss_pred CChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCcEEEcCEEEECCCCCCccccc------cceeEEEEEE
Q 019351 231 LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRK------VGRVARAIAI 304 (342)
Q Consensus 231 ~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~~~~~~~~~------~~~~~~~~~i 304 (342)
+..++++|+++|...|+.|.++++|++|... .++..+|+|.-+.|+|.+||.|+|.|...+.. .-.+..-..|
T Consensus 186 P~~lC~ala~~A~~~GA~viE~cpV~~i~~~-~~~~~gVeT~~G~iet~~~VNaaGvWAr~Vg~m~gvkvPL~p~~H~Yv 264 (856)
T KOG2844|consen 186 PAGLCQALARAASALGALVIENCPVTGLHVE-TDKFGGVETPHGSIETECVVNAAGVWAREVGAMAGVKVPLVPMHHAYV 264 (856)
T ss_pred HHHHHHHHHHHHHhcCcEEEecCCcceEEee-cCCccceeccCcceecceEEechhHHHHHhhhhcCCcccceeeeeeEE
Confidence 5689999999999999999999999999877 66677999988899999999999999754321 1223333446
Q ss_pred ecCCCC
Q 019351 305 MSHPIP 310 (342)
Q Consensus 305 ~~~~l~ 310 (342)
+++++.
T Consensus 265 vT~~Ie 270 (856)
T KOG2844|consen 265 VTSRIE 270 (856)
T ss_pred EecccC
Confidence 666654
No 68
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=99.29 E-value=7.9e-11 Score=108.53 Aligned_cols=42 Identities=29% Similarity=0.513 Sum_probs=39.5
Q ss_pred cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCcc
Q 019351 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS 45 (342)
Q Consensus 4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t 45 (342)
+|||+|||||+||++||+.|+++|++|+|+|+++.+|....+
T Consensus 3 ~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~ 44 (396)
T COG0644 3 EYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCC 44 (396)
T ss_pred eeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccc
Confidence 589999999999999999999999999999999999987664
No 69
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=99.29 E-value=1.5e-10 Score=109.77 Aligned_cols=54 Identities=26% Similarity=0.309 Sum_probs=44.5
Q ss_pred ChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe--CC---cEEEcCEEEECCC
Q 019351 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS--EG---ETAKCKKVVCDPS 286 (342)
Q Consensus 232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~--~g---~~~~a~~vI~~~~ 286 (342)
..++..|.+.+++.|++|+++++|++|..+ ++++++|.. .+ .++.|+.||+|+|
T Consensus 190 ~~l~~~L~~~~~~~gv~i~~~t~v~~l~~~-~g~V~Gv~~~~~~g~~~~i~a~~VVlAtG 248 (506)
T PRK06481 190 GYLVDGLLKNVQERKIPLFVNADVTKITEK-DGKVTGVKVKINGKETKTISSKAVVVTTG 248 (506)
T ss_pred HHHHHHHHHHHHHcCCeEEeCCeeEEEEec-CCEEEEEEEEeCCCeEEEEecCeEEEeCC
Confidence 357889999999999999999999999876 677777655 22 3689999999886
No 70
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=99.28 E-value=2.1e-10 Score=104.23 Aligned_cols=240 Identities=13% Similarity=0.189 Sum_probs=124.1
Q ss_pred ccEEEECCCchHHHHHHhhhhC----CCeEEEEcCCCCCCCcCcccchHHHHHhccCCCCCCCCCCCCCcceeccCcchh
Q 019351 5 YDVIVLGTGLKECILSGLLSVD----GLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFI 80 (342)
Q Consensus 5 ~DViIiG~GiaGl~aA~~L~~~----G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 80 (342)
.++-|||+|+++|+||.+|-+- |.+|.|||+.+.+||.+....... ..|..--+...-
T Consensus 3 ~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GGsldg~g~~~------------------~GYv~RgGR~~~ 64 (500)
T PF06100_consen 3 KKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGGSLDGAGDPE------------------NGYVIRGGRMME 64 (500)
T ss_pred ceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCCcccCCCCCC------------------CCeeecCCcccc
Confidence 5788999999999999999986 479999999999999987553210 112211111110
Q ss_pred ccccHHHHHHhhc---CC------cceeeEEEcCce-----EEEeCCeEEecCCCcHHHhcCCCCChhhHHHHHHHHHHH
Q 019351 81 IANGALVRVLIHT---DV------TKYLYFKAVDGS-----FVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYV 146 (342)
Q Consensus 81 ~~~~~l~~~l~~~---~~------~~~l~~~~~~~~-----~~~~~g~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~ 146 (342)
....-+.++|... .. ..+..+....+. .+..+|..... ..-+.+ ..+..+.+++.+
T Consensus 65 ~~~eclwdLls~IPSle~p~~SVlDe~~~~n~~~p~~s~~Rli~~~G~~~~~---------~~~~~L-s~k~r~eL~kL~ 134 (500)
T PF06100_consen 65 FHYECLWDLLSSIPSLEDPGKSVLDEIYWFNKEDPNYSKARLIDKRGQIVDT---------DSKFGL-SEKDRMELIKLL 134 (500)
T ss_pred chhHHHHHHHHhCCCCCCCCCcHHHHHHHhccCCCCCcceeeeccCCccccc---------cCcCCC-CHHHHHHHHHHh
Confidence 0001222222110 00 000111111110 01112221110 111221 223333444443
Q ss_pred hhcCCCCcccccccCCCCCcHHHHHHHcCCChhHHHHHHhhhhcccCCCCCCCchHHHHHHHHHHHHhhccccCCCceEE
Q 019351 147 QDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIY 226 (342)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 226 (342)
..-. ..+.+.++.||+...-+..++..++....++ .. ..++.+.-..+.+|++.+.....-+...+
T Consensus 135 l~~E---------~~L~~~~I~d~F~~~FF~SnFW~~W~T~FAF---qp--WhSa~E~rRyl~Rf~h~~~~l~~l~~l~~ 200 (500)
T PF06100_consen 135 LTPE---------EDLGDKRIEDWFSESFFESNFWYMWSTMFAF---QP--WHSAVEFRRYLHRFIHEIPGLNDLSGLDR 200 (500)
T ss_pred cCCH---------HHhCcccHHHhcchhhhcCchhHhHHHhhcc---Cc--chhHHHHHHHHHHHHHhcCCCCCcccccc
Confidence 3211 1246788999876554666555444332221 11 12344443444555444433322344445
Q ss_pred eCCC-CChHHHHHHHHHHHcCcEEEcCCccceEEEcCC-C-c-EEEEEe--CCc--EEE---cCEEEECCC
Q 019351 227 PLYG-LGELPQAFARLSAVYGGTYMLNKPECKVEFDEE-G-K-VVGVTS--EGE--TAK---CKKVVCDPS 286 (342)
Q Consensus 227 ~~gG-~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~-~-~-~~~v~~--~g~--~~~---a~~vI~~~~ 286 (342)
.++. +..++..|.+.++++||++++++.|+.|+.+.+ + + +..+.. +|. +|. -|.|+++.|
T Consensus 201 T~YNQyeSii~Pl~~~L~~~GV~F~~~t~V~di~~~~~~~~~~~~~i~~~~~g~~~~i~l~~~DlV~vT~G 271 (500)
T PF06100_consen 201 TKYNQYESIILPLIRYLKSQGVDFRFNTKVTDIDFDITGDKKTATRIHIEQDGKEETIDLGPDDLVFVTNG 271 (500)
T ss_pred CccccHHHHHHHHHHHHHHCCCEEECCCEEEEEEEEccCCCeeEEEEEEEcCCCeeEEEeCCCCEEEEECC
Confidence 5554 889999999999999999999999999987532 2 2 222322 443 333 567888765
No 71
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=99.28 E-value=6.7e-11 Score=101.89 Aligned_cols=40 Identities=33% Similarity=0.471 Sum_probs=37.5
Q ss_pred cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcC
Q 019351 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES 43 (342)
Q Consensus 4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~ 43 (342)
++||+|||||++||+||++|+++|++|+|+|+++.+||..
T Consensus 25 ~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~ 64 (257)
T PRK04176 25 EVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGM 64 (257)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCcc
Confidence 5899999999999999999999999999999999888754
No 72
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=99.27 E-value=1.2e-10 Score=100.02 Aligned_cols=40 Identities=38% Similarity=0.561 Sum_probs=37.7
Q ss_pred cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcC
Q 019351 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES 43 (342)
Q Consensus 4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~ 43 (342)
++||+|||||++||+||+.|+++|++|+|+||+..+||.+
T Consensus 21 ~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~ 60 (254)
T TIGR00292 21 ESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGS 60 (254)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccc
Confidence 5899999999999999999999999999999999988764
No 73
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=99.26 E-value=1.8e-11 Score=101.68 Aligned_cols=44 Identities=18% Similarity=0.283 Sum_probs=41.8
Q ss_pred cEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCcccchH
Q 019351 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLI 49 (342)
Q Consensus 6 DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t~~~~ 49 (342)
+|+|||+|++||+||+.|+.+|.+|+||||..-+|||..|.+..
T Consensus 3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~ 46 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLD 46 (331)
T ss_pred cEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccC
Confidence 69999999999999999999999999999999999999988754
No 74
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=99.22 E-value=1.1e-10 Score=107.53 Aligned_cols=56 Identities=11% Similarity=0.039 Sum_probs=45.6
Q ss_pred ChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCcEEEcCEEEECCCCCC
Q 019351 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLP 289 (342)
Q Consensus 232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~-~g~~~~a~~vI~~~~~~~ 289 (342)
..+.+.|.+.+++.|++++.+++|++++.+ ++++. +++ +|.+++||.||.|.|.++
T Consensus 113 ~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~-~~~v~-v~~~~g~~~~a~~vV~AdG~~S 169 (392)
T PRK08773 113 DLLVDRLWAALHAAGVQLHCPARVVALEQD-ADRVR-LRLDDGRRLEAALAIAADGAAS 169 (392)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCeEEEEEec-CCeEE-EEECCCCEEEeCEEEEecCCCc
Confidence 356777888888889999999999999876 55544 554 677899999999999876
No 75
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.22 E-value=9.3e-10 Score=105.31 Aligned_cols=57 Identities=19% Similarity=0.184 Sum_probs=45.5
Q ss_pred CCCCChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe--CCc--EEEcC-EEEECCC
Q 019351 228 LYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS--EGE--TAKCK-KVVCDPS 286 (342)
Q Consensus 228 ~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~--~g~--~~~a~-~vI~~~~ 286 (342)
.+| ..++..|.+.+++.|++|+++++|++|..+ +++|++|.. +++ .+.|+ .||+|+|
T Consensus 214 ~~G-~~l~~~L~~~~~~~Gv~i~~~t~v~~Li~~-~g~V~GV~~~~~g~~~~i~a~kaVILAtG 275 (564)
T PRK12845 214 AGG-QALAAGLFAGVLRAGIPIWTETSLVRLTDD-GGRVTGAVVDHRGREVTVTARRGVVLAAG 275 (564)
T ss_pred CCh-HHHHHHHHHHHHHCCCEEEecCEeeEEEec-CCEEEEEEEEECCcEEEEEcCCEEEEecC
Confidence 344 789999999999999999999999999876 788888765 443 35674 6888775
No 76
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=99.22 E-value=5.1e-10 Score=104.67 Aligned_cols=59 Identities=15% Similarity=0.057 Sum_probs=45.0
Q ss_pred CChHHHHHHHHHHH-cCcEEEcCCccceEEEcCCCcEEEEE---eCCc---EEEcCEEEECCCCCCc
Q 019351 231 LGELPQAFARLSAV-YGGTYMLNKPECKVEFDEEGKVVGVT---SEGE---TAKCKKVVCDPSYLPN 290 (342)
Q Consensus 231 ~~~l~~~l~~~~~~-~G~~i~~~~~V~~i~~~~~~~~~~v~---~~g~---~~~a~~vI~~~~~~~~ 290 (342)
...+.++|++.+.+ .|++++++++|+.|+.++++.+. +. ++.+ ++.||+||+|+|.|.+
T Consensus 183 ~~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~w~-v~v~~t~~g~~~~i~Ad~VV~AAGawS~ 248 (497)
T PRK13339 183 FGALTRKLAKHLESHPNAQVKYNHEVVDLERLSDGGWE-VTVKDRNTGEKREQVADYVFIGAGGGAI 248 (497)
T ss_pred HHHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCCCEE-EEEEecCCCceEEEEcCEEEECCCcchH
Confidence 56888999998865 49999999999999875234433 33 3333 6999999999998864
No 77
>PRK07121 hypothetical protein; Validated
Probab=99.21 E-value=1.1e-09 Score=103.99 Aligned_cols=58 Identities=26% Similarity=0.361 Sum_probs=46.6
Q ss_pred CChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe--CCc--EEEc-CEEEECCCCC
Q 019351 231 LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS--EGE--TAKC-KKVVCDPSYL 288 (342)
Q Consensus 231 ~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~--~g~--~~~a-~~vI~~~~~~ 288 (342)
...+...|.+.+++.|++|+++++|++|..++++++++|.. +++ .++| +.||+|+|-.
T Consensus 176 g~~~~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~~~~~i~a~k~VVlAtGg~ 238 (492)
T PRK07121 176 GAMLMDPLAKRAAALGVQIRYDTRATRLIVDDDGRVVGVEARRYGETVAIRARKGVVLAAGGF 238 (492)
T ss_pred hHHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCCEEEEEEEeCCcEEEEEeCCEEEECCCCc
Confidence 45688899999999999999999999998763467887765 333 5889 9999988743
No 78
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=99.21 E-value=7.7e-10 Score=103.56 Aligned_cols=57 Identities=25% Similarity=0.226 Sum_probs=45.3
Q ss_pred ChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe--C-Cc--EEEcCEEEECCCCC
Q 019351 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS--E-GE--TAKCKKVVCDPSYL 288 (342)
Q Consensus 232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~--~-g~--~~~a~~vI~~~~~~ 288 (342)
..+...|.+.+++.|++|+++++|++|..++++++++|.. . +. .+.++.||+|+|.+
T Consensus 130 ~~l~~~l~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg~ 191 (439)
T TIGR01813 130 AEIVQKLYKKAKKEGIDTRLNSKVEDLIQDDQGTVVGVVVKGKGKGIYIKAAKAVVLATGGF 191 (439)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEeeEeEECCCCcEEEEEEEeCCCeEEEEecceEEEecCCC
Confidence 4688899999999999999999999998864567776654 2 32 37899999988744
No 79
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=99.20 E-value=6.3e-10 Score=103.47 Aligned_cols=57 Identities=25% Similarity=0.321 Sum_probs=45.1
Q ss_pred CChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe----CCc--EEEcCEEEECCCCC
Q 019351 231 LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EGE--TAKCKKVVCDPSYL 288 (342)
Q Consensus 231 ~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~----~g~--~~~a~~vI~~~~~~ 288 (342)
...++..|.+.++++|++|+++++|++|..+ +++|++|.. +++ +++|+.||+|+|-.
T Consensus 140 g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~e-~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~ 202 (417)
T PF00890_consen 140 GKALIEALAKAAEEAGVDIRFNTRVTDLITE-DGRVTGVVAENPADGEFVRIKAKAVILATGGF 202 (417)
T ss_dssp HHHHHHHHHHHHHHTTEEEEESEEEEEEEEE-TTEEEEEEEEETTTCEEEEEEESEEEE----B
T ss_pred HHHHHHHHHHHHhhcCeeeeccceeeeEEEe-CCceeEEEEEECCCCeEEEEeeeEEEeccCcc
Confidence 4568889999999999999999999999998 789988875 344 57899999988643
No 80
>PRK06847 hypothetical protein; Provisional
Probab=99.19 E-value=2e-10 Score=105.25 Aligned_cols=56 Identities=21% Similarity=0.242 Sum_probs=44.5
Q ss_pred hHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCcEEEcCEEEECCCCCC
Q 019351 233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLP 289 (342)
Q Consensus 233 ~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~~~~ 289 (342)
.+.+.|.+.+++.|++|+++++|++++.+ ++++.....+|.++.||.||.|.|.++
T Consensus 108 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~-~~~~~v~~~~g~~~~ad~vI~AdG~~s 163 (375)
T PRK06847 108 ALARILADAARAAGADVRLGTTVTAIEQD-DDGVTVTFSDGTTGRYDLVVGADGLYS 163 (375)
T ss_pred HHHHHHHHHHHHhCCEEEeCCEEEEEEEc-CCEEEEEEcCCCEEEcCEEEECcCCCc
Confidence 46667777777789999999999999876 555443334788899999999999875
No 81
>PRK06175 L-aspartate oxidase; Provisional
Probab=99.19 E-value=4.1e-10 Score=104.71 Aligned_cols=42 Identities=21% Similarity=0.324 Sum_probs=37.6
Q ss_pred CCCcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcC
Q 019351 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES 43 (342)
Q Consensus 1 m~~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~ 43 (342)
|..++||+|||+|.+||+||..++ +|.+|+|+||.+..||.+
T Consensus 1 m~~~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~~~gg~s 42 (433)
T PRK06175 1 MNLYADVLIVGSGVAGLYSALNLR-KDLKILMVSKGKLNECNT 42 (433)
T ss_pred CCccccEEEECchHHHHHHHHHhc-cCCCEEEEecCCCCCCch
Confidence 666799999999999999999985 799999999999887753
No 82
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=99.14 E-value=4.8e-10 Score=99.33 Aligned_cols=39 Identities=33% Similarity=0.554 Sum_probs=32.7
Q ss_pred ccEEEECCCchHHHHHHhhhhCC-CeEEEEcCCCCCCCcC
Q 019351 5 YDVIVLGTGLKECILSGLLSVDG-LKVLHMDRNDYYGGES 43 (342)
Q Consensus 5 ~DViIiG~GiaGl~aA~~L~~~G-~~V~vlE~~~~~GG~~ 43 (342)
||+||||+|.+|+++|.+|+++| .+|+|||+++......
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~~~~~~ 40 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPRYPPED 40 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBSCTTSG
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEccccCcccc
Confidence 79999999999999999999998 7999999987655444
No 83
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=99.14 E-value=2.5e-09 Score=102.57 Aligned_cols=44 Identities=34% Similarity=0.562 Sum_probs=41.0
Q ss_pred CCCcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCC--CCCCcCc
Q 019351 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND--YYGGESS 44 (342)
Q Consensus 1 m~~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~--~~GG~~~ 44 (342)
|..++||+|||+|.+||+||..++++|.+|+||||.+ .+||.+.
T Consensus 1 ~~~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~~~~~GG~s~ 46 (549)
T PRK12834 1 MAMDADVIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGGQAF 46 (549)
T ss_pred CCccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCcee
Confidence 7778999999999999999999999999999999999 7888664
No 84
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.14 E-value=1.2e-09 Score=105.21 Aligned_cols=42 Identities=29% Similarity=0.501 Sum_probs=38.8
Q ss_pred CCcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcC
Q 019351 2 DEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES 43 (342)
Q Consensus 2 ~~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~ 43 (342)
+.++||+|||+|.+||+||+.++++|.+|+||||.+..||.+
T Consensus 9 ~~~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~gG~t 50 (584)
T PRK12835 9 DREVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFGGST 50 (584)
T ss_pred cCcCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCCCchH
Confidence 457999999999999999999999999999999999988854
No 85
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=99.14 E-value=2.2e-09 Score=103.51 Aligned_cols=57 Identities=19% Similarity=0.281 Sum_probs=47.0
Q ss_pred ChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe--CCc--EEEc-CEEEECCCCCC
Q 019351 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS--EGE--TAKC-KKVVCDPSYLP 289 (342)
Q Consensus 232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~--~g~--~~~a-~~vI~~~~~~~ 289 (342)
..++..|.+.+++.|++|+++++|++|..+ ++++++|.. +++ +++| +.||+|+|-+.
T Consensus 217 ~~l~~~L~~~a~~~Gv~i~~~t~v~~l~~~-~g~v~GV~~~~~~~~~~i~a~k~VVlAtGg~~ 278 (581)
T PRK06134 217 NALVARLLKSAEDLGVRIWESAPARELLRE-DGRVAGAVVETPGGLQEIRARKGVVLAAGGFP 278 (581)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEEe-CCEEEEEEEEECCcEEEEEeCCEEEEcCCCcc
Confidence 468899999999999999999999999877 778877754 344 4789 89999987664
No 86
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=99.13 E-value=1.4e-09 Score=96.12 Aligned_cols=56 Identities=18% Similarity=0.192 Sum_probs=42.9
Q ss_pred hHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEE-EeCCcEEEcCEEEECCCCCC
Q 019351 233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGV-TSEGETAKCKKVVCDPSYLP 289 (342)
Q Consensus 233 ~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v-~~~g~~~~a~~vI~~~~~~~ 289 (342)
.+.+.|.+.+++.|++++.+++|+++..+ ++++... ++++.+++||.||.|.|...
T Consensus 92 ~l~~~l~~~~~~~gv~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~a~~vv~a~G~~s 148 (295)
T TIGR02032 92 AFDEQLAERAQEAGAELRLGTTVLDVEIH-DDRVVVIVRGGEGTVTAKIVIGADGSRS 148 (295)
T ss_pred HHHHHHHHHHHHcCCEEEeCcEEeeEEEe-CCEEEEEEcCccEEEEeCEEEECCCcch
Confidence 45667778888889999999999999876 4544332 23456899999999998763
No 87
>PRK08163 salicylate hydroxylase; Provisional
Probab=99.11 E-value=1.7e-09 Score=99.94 Aligned_cols=56 Identities=7% Similarity=-0.008 Sum_probs=43.0
Q ss_pred hHHHHHHHHHHHcC-cEEEcCCccceEEEcCCCcEEEEEeCCcEEEcCEEEECCCCCC
Q 019351 233 ELPQAFARLSAVYG-GTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLP 289 (342)
Q Consensus 233 ~l~~~l~~~~~~~G-~~i~~~~~V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~~~~ 289 (342)
.+.+.|.+.+.+.+ ++++.+++|+++..+ ++.+.....+|.++.||.||.|.|.++
T Consensus 110 ~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~-~~~v~v~~~~g~~~~ad~vV~AdG~~S 166 (396)
T PRK08163 110 DIHLSLLEAVLDHPLVEFRTSTHVVGIEQD-GDGVTVFDQQGNRWTGDALIGCDGVKS 166 (396)
T ss_pred HHHHHHHHHHHhcCCcEEEeCCEEEEEecC-CCceEEEEcCCCEEecCEEEECCCcCh
Confidence 46667777776664 899999999999876 555443334777899999999999774
No 88
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=99.11 E-value=5.7e-09 Score=100.67 Aligned_cols=41 Identities=24% Similarity=0.442 Sum_probs=39.1
Q ss_pred cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCc
Q 019351 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS 44 (342)
Q Consensus 4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~ 44 (342)
++||+|||+|++||+||+.++++|.+|+|+||.+..||.+.
T Consensus 9 ~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~~gG~~~ 49 (574)
T PRK12842 9 TCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPVFGGTTA 49 (574)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCeEEEEecCCCCCCccc
Confidence 68999999999999999999999999999999999998875
No 89
>PRK07190 hypothetical protein; Provisional
Probab=99.11 E-value=1.5e-09 Score=102.28 Aligned_cols=55 Identities=13% Similarity=0.163 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCcEEEcCEEEECCCCCC
Q 019351 234 LPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLP 289 (342)
Q Consensus 234 l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~~~~ 289 (342)
+-..|.+.+++.|++|+.+++|++++.+ ++++.....+|++++|+.||.|.|..+
T Consensus 111 le~~L~~~~~~~Gv~v~~~~~v~~l~~~-~~~v~v~~~~g~~v~a~~vVgADG~~S 165 (487)
T PRK07190 111 VEKLLDDKLKEAGAAVKRNTSVVNIELN-QAGCLTTLSNGERIQSRYVIGADGSRS 165 (487)
T ss_pred HHHHHHHHHHHCCCEEEeCCEEEEEEEc-CCeeEEEECCCcEEEeCEEEECCCCCH
Confidence 4455666777889999999999999887 555544444677899999999998764
No 90
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.09 E-value=1.9e-09 Score=103.89 Aligned_cols=55 Identities=20% Similarity=0.189 Sum_probs=44.7
Q ss_pred ChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe----CCc--EEEcCEEEECCC
Q 019351 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EGE--TAKCKKVVCDPS 286 (342)
Q Consensus 232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~----~g~--~~~a~~vI~~~~ 286 (342)
..+...|.+.+++.|++|++++.++++..++++++.++.. ++. .+.|+.||+|+|
T Consensus 143 ~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATG 203 (588)
T PRK08958 143 HALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTAICIETGEVVYFKARATVLATG 203 (588)
T ss_pred HHHHHHHHHHhhhcCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCcEEEEEcCeEEECCC
Confidence 4678889888888899999999999998753678888764 343 578999999876
No 91
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=99.09 E-value=9.2e-10 Score=101.43 Aligned_cols=55 Identities=16% Similarity=0.176 Sum_probs=46.0
Q ss_pred CChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCcEEEcCEEEECCCC
Q 019351 231 LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSY 287 (342)
Q Consensus 231 ~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~~ 287 (342)
...+.+.|.+.+++.|++++++++|++|..+ ++ .+.++++++++.||.||+|+|.
T Consensus 104 a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~-~~-~~~v~~~~~~i~ad~VIlAtG~ 158 (400)
T TIGR00275 104 AADVLDALLNELKELGVEILTNSKVKSIKKD-DN-GFGVETSGGEYEADKVILATGG 158 (400)
T ss_pred HHHHHHHHHHHHHHCCCEEEeCCEEEEEEec-CC-eEEEEECCcEEEcCEEEECCCC
Confidence 4578888999999999999999999999765 44 4566667778999999999875
No 92
>PRK12839 hypothetical protein; Provisional
Probab=99.09 E-value=5.5e-09 Score=100.31 Aligned_cols=42 Identities=29% Similarity=0.491 Sum_probs=39.7
Q ss_pred CcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCc
Q 019351 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS 44 (342)
Q Consensus 3 ~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~ 44 (342)
.++||+|||+|.+|++||+.|+++|.+|+|+||++.+||.+.
T Consensus 7 ~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~~ 48 (572)
T PRK12839 7 HTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTCGGATA 48 (572)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcccc
Confidence 469999999999999999999999999999999999999875
No 93
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.09 E-value=1.5e-09 Score=104.12 Aligned_cols=43 Identities=33% Similarity=0.525 Sum_probs=39.5
Q ss_pred CCcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCc
Q 019351 2 DEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS 44 (342)
Q Consensus 2 ~~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~ 44 (342)
+.++||+|||+|.+|++||+.|+++|.+|+|||+.+..||.+.
T Consensus 4 d~~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~~~gG~~~ 46 (557)
T PRK12844 4 DETYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDKVGGSTA 46 (557)
T ss_pred CCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCceec
Confidence 3479999999999999999999999999999999998898753
No 94
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=99.08 E-value=3e-09 Score=102.51 Aligned_cols=56 Identities=20% Similarity=0.190 Sum_probs=45.4
Q ss_pred ChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe--CCc--EEEc-CEEEECCCCC
Q 019351 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS--EGE--TAKC-KKVVCDPSYL 288 (342)
Q Consensus 232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~--~g~--~~~a-~~vI~~~~~~ 288 (342)
..++..|.+.++++|++|+++++|+++..+ ++++++|.. +++ ++.| +.||+|+|-.
T Consensus 221 ~~l~~aL~~~~~~~Gv~i~~~t~v~~Li~~-~g~V~GV~~~~~g~~~~i~A~~~VVlAtGg~ 281 (578)
T PRK12843 221 NALIGRLLYSLRARGVRILTQTDVESLETD-HGRVIGATVVQGGVRRRIRARGGVVLATGGF 281 (578)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEee-CCEEEEEEEecCCeEEEEEccceEEECCCCc
Confidence 468889999999999999999999999876 788888766 333 4776 6799888644
No 95
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.08 E-value=9.9e-10 Score=101.75 Aligned_cols=55 Identities=11% Similarity=0.003 Sum_probs=44.0
Q ss_pred hHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCcEEEcCEEEECCCCCC
Q 019351 233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLP 289 (342)
Q Consensus 233 ~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~-~g~~~~a~~vI~~~~~~~ 289 (342)
.+.+.|.+.+++.|++++.+++|++++.+ ++.+. |++ +|.+++||.||.|.|.++
T Consensus 113 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~-~~~v~-v~~~~g~~~~a~~vVgAdG~~S 168 (405)
T PRK05714 113 VVQDALLERLHDSDIGLLANARLEQMRRS-GDDWL-LTLADGRQLRAPLVVAADGANS 168 (405)
T ss_pred HHHHHHHHHHhcCCCEEEcCCEEEEEEEc-CCeEE-EEECCCCEEEeCEEEEecCCCc
Confidence 56667777777789999999999999876 45444 444 677899999999999875
No 96
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=99.07 E-value=2.9e-09 Score=103.13 Aligned_cols=55 Identities=16% Similarity=0.283 Sum_probs=44.5
Q ss_pred ChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe----CCc--EEEcCEEEECCC
Q 019351 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EGE--TAKCKKVVCDPS 286 (342)
Q Consensus 232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~----~g~--~~~a~~vI~~~~ 286 (342)
..+...|.+.+++.|++|+.++.++++..++++++.+|.. +|. .+.|+.||+|+|
T Consensus 166 ~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATG 226 (617)
T PTZ00139 166 HAMLHTLYGQSLKYDCNFFIEYFALDLIMDEDGECRGVIAMSMEDGSIHRFRAHYTVIATG 226 (617)
T ss_pred HHHHHHHHHHHHhCCCEEEeceEEEEEEECCCCEEEEEEEEECCCCeEEEEECCcEEEeCC
Confidence 4688899998989999999999999988733678888764 343 578999998875
No 97
>PRK06185 hypothetical protein; Provisional
Probab=99.07 E-value=3.1e-09 Score=98.56 Aligned_cols=37 Identities=24% Similarity=0.357 Sum_probs=34.2
Q ss_pred CCcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCC
Q 019351 2 DEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY 38 (342)
Q Consensus 2 ~~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~ 38 (342)
..++||+|||||++|+++|+.|+++|++|+|+|+++.
T Consensus 4 ~~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~ 40 (407)
T PRK06185 4 VETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHAD 40 (407)
T ss_pred cccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 3569999999999999999999999999999999854
No 98
>PRK07804 L-aspartate oxidase; Provisional
Probab=99.07 E-value=2.8e-09 Score=101.96 Aligned_cols=41 Identities=22% Similarity=0.347 Sum_probs=37.5
Q ss_pred CcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcC
Q 019351 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES 43 (342)
Q Consensus 3 ~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~ 43 (342)
.++||+|||+|++||+||..++++|.+|+|+||....||.+
T Consensus 15 ~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~g~s 55 (541)
T PRK07804 15 DAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDDGST 55 (541)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCCCch
Confidence 36899999999999999999999999999999999877743
No 99
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=99.05 E-value=4.3e-09 Score=96.77 Aligned_cols=57 Identities=21% Similarity=0.121 Sum_probs=46.5
Q ss_pred ChHHHHHHHHHHHcC-cEEEcCCccceEEEcCCCcEEEEEe-CCcEEEcCEEEECCCCCC
Q 019351 232 GELPQAFARLSAVYG-GTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLP 289 (342)
Q Consensus 232 ~~l~~~l~~~~~~~G-~~i~~~~~V~~i~~~~~~~~~~v~~-~g~~~~a~~vI~~~~~~~ 289 (342)
..+.+.|.+.+.+.+ ++++.+++|+.++.+ ++.+..... +|.+++||.||.|-|.++
T Consensus 104 ~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~-~~~v~v~l~~dG~~~~a~llVgADG~~S 162 (387)
T COG0654 104 SDLLNALLEAARALPNVTLRFGAEVEAVEQD-GDGVTVTLSFDGETLDADLLVGADGANS 162 (387)
T ss_pred HHHHHHHHHHHhhCCCcEEEcCceEEEEEEc-CCceEEEEcCCCcEEecCEEEECCCCch
Confidence 567778888887776 899999999999987 566664444 788999999999999774
No 100
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=99.05 E-value=1.6e-10 Score=93.32 Aligned_cols=41 Identities=34% Similarity=0.460 Sum_probs=39.0
Q ss_pred cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCc
Q 019351 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS 44 (342)
Q Consensus 4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~ 44 (342)
+.||+|||||.+||+|||+|+++|.+|+|+|++..+||-++
T Consensus 30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w 70 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIW 70 (262)
T ss_pred hccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCccc
Confidence 47999999999999999999999999999999999999876
No 101
>PRK06184 hypothetical protein; Provisional
Probab=99.05 E-value=1.9e-09 Score=102.54 Aligned_cols=55 Identities=15% Similarity=0.045 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEE---eCCcEEEcCEEEECCCCCC
Q 019351 234 LPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVT---SEGETAKCKKVVCDPSYLP 289 (342)
Q Consensus 234 l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~---~~g~~~~a~~vI~~~~~~~ 289 (342)
+-..|.+.+++.|++|+++++|++++.+ ++.+.... .++.+++||.||.|.|..+
T Consensus 111 le~~L~~~l~~~gv~i~~~~~v~~i~~~-~~~v~v~~~~~~~~~~i~a~~vVgADG~~S 168 (502)
T PRK06184 111 TERILRERLAELGHRVEFGCELVGFEQD-ADGVTARVAGPAGEETVRARYLVGADGGRS 168 (502)
T ss_pred HHHHHHHHHHHCCCEEEeCcEEEEEEEc-CCcEEEEEEeCCCeEEEEeCEEEECCCCch
Confidence 4456677777789999999999999887 55554333 2456899999999998764
No 102
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=99.04 E-value=1.4e-09 Score=100.05 Aligned_cols=56 Identities=16% Similarity=0.102 Sum_probs=44.9
Q ss_pred ChHHHHHHHHHHHcC-cEEEcCCccceEEEcCCCcEEEEEe-CCcEEEcCEEEECCCCCC
Q 019351 232 GELPQAFARLSAVYG-GTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLP 289 (342)
Q Consensus 232 ~~l~~~l~~~~~~~G-~~i~~~~~V~~i~~~~~~~~~~v~~-~g~~~~a~~vI~~~~~~~ 289 (342)
..+.+.|.+.+.+.| ++|+.+++|+++..+ ++++. +++ +|.++.||.||.|.|..+
T Consensus 106 ~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~-~~~~~-v~~~~g~~~~~~~vi~adG~~S 163 (385)
T TIGR01988 106 RVLQQALWERLQEYPNVTLLCPARVVELPRH-SDHVE-LTLDDGQQLRARLLVGADGANS 163 (385)
T ss_pred HHHHHHHHHHHHhCCCcEEecCCeEEEEEec-CCeeE-EEECCCCEEEeeEEEEeCCCCC
Confidence 457777888888887 999999999999876 55544 544 777899999999988764
No 103
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.04 E-value=4e-09 Score=101.98 Aligned_cols=55 Identities=15% Similarity=0.231 Sum_probs=44.7
Q ss_pred ChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe----CCc--EEEcCEEEECCC
Q 019351 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EGE--TAKCKKVVCDPS 286 (342)
Q Consensus 232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~----~g~--~~~a~~vI~~~~ 286 (342)
..+...|.+.+++.|++|++++.|++|..++++++.+|.. +|. .+.|+.||+|+|
T Consensus 149 ~~i~~~L~~~~~~~gi~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATG 209 (598)
T PRK09078 149 HAILHTLYQQSLKHNAEFFIEYFALDLIMDDGGVCRGVVAWNLDDGTLHRFRAHMVVLATG 209 (598)
T ss_pred HHHHHHHHHHHhhcCCEEEEeEEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCC
Confidence 3588889998888999999999999998763477888764 343 688999999886
No 104
>PRK08013 oxidoreductase; Provisional
Probab=99.04 E-value=2.4e-09 Score=99.02 Aligned_cols=56 Identities=13% Similarity=0.033 Sum_probs=42.7
Q ss_pred hHHHHHHHHHHHc-CcEEEcCCccceEEEcCCCcEEEEEeCCcEEEcCEEEECCCCCC
Q 019351 233 ELPQAFARLSAVY-GGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLP 289 (342)
Q Consensus 233 ~l~~~l~~~~~~~-G~~i~~~~~V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~~~~ 289 (342)
.+-..|.+.+... |++++.+++|++++.+ ++.+.....+|.+++||.||.|.|..+
T Consensus 112 ~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~-~~~v~v~~~~g~~i~a~lvVgADG~~S 168 (400)
T PRK08013 112 VIHYALWQKAQQSSDITLLAPAELQQVAWG-ENEAFLTLKDGSMLTARLVVGADGANS 168 (400)
T ss_pred HHHHHHHHHHhcCCCcEEEcCCeeEEEEec-CCeEEEEEcCCCEEEeeEEEEeCCCCc
Confidence 4566677777665 7999999999999876 444433334788999999999998764
No 105
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=99.03 E-value=1.4e-08 Score=96.74 Aligned_cols=41 Identities=32% Similarity=0.503 Sum_probs=38.0
Q ss_pred CcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCc
Q 019351 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS 44 (342)
Q Consensus 3 ~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~ 44 (342)
.++||+|||+| +||+||++++++|.+|+||||.+.+||.+.
T Consensus 6 ~~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~Gg~t~ 46 (513)
T PRK12837 6 EEVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKFGGTTA 46 (513)
T ss_pred CccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCCCccee
Confidence 46899999999 999999999999999999999999898664
No 106
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.03 E-value=2.5e-09 Score=98.97 Aligned_cols=57 Identities=14% Similarity=0.092 Sum_probs=46.2
Q ss_pred ChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCcEEEcCEEEECCCCCC
Q 019351 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLP 289 (342)
Q Consensus 232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~~~~ 289 (342)
..+...|.+.+.+.|++++.+++|++++.+ ++.+.....+|.++.||.||.|.|.++
T Consensus 111 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~-~~~v~v~~~~g~~~~ad~vI~AdG~~S 167 (403)
T PRK07333 111 RVLINALRKRAEALGIDLREATSVTDFETR-DEGVTVTLSDGSVLEARLLVAADGARS 167 (403)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEEc-CCEEEEEECCCCEEEeCEEEEcCCCCh
Confidence 467888888888889999999999999876 555443334777899999999999875
No 107
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=99.03 E-value=2.4e-09 Score=97.09 Aligned_cols=56 Identities=23% Similarity=0.222 Sum_probs=42.3
Q ss_pred hHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe---CC--cEEEcCEEEECCCCCC
Q 019351 233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS---EG--ETAKCKKVVCDPSYLP 289 (342)
Q Consensus 233 ~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~---~g--~~~~a~~vI~~~~~~~ 289 (342)
.+-+.|.+.+++.|++|+.+++|+++..+ .+++..+.. +| .+++||.||.|.|..+
T Consensus 112 ~l~~~L~~~~~~~gv~i~~~~~v~~~~~d-~~~~~~~~~~~~~g~~~~i~adlvVgADG~~S 172 (356)
T PF01494_consen 112 ELDRALREEAEERGVDIRFGTRVVSIEQD-DDGVTVVVRDGEDGEEETIEADLVVGADGAHS 172 (356)
T ss_dssp HHHHHHHHHHHHHTEEEEESEEEEEEEEE-TTEEEEEEEETCTCEEEEEEESEEEE-SGTT-
T ss_pred HHHHhhhhhhhhhhhhheeeeeccccccc-ccccccccccccCCceeEEEEeeeecccCccc
Confidence 56677888888889999999999999887 555544433 23 2689999999999875
No 108
>PLN02661 Putative thiazole synthesis
Probab=99.02 E-value=6.5e-09 Score=92.01 Aligned_cols=40 Identities=25% Similarity=0.353 Sum_probs=36.7
Q ss_pred cccEEEECCCchHHHHHHhhhhC-CCeEEEEcCCCCCCCcC
Q 019351 4 EYDVIVLGTGLKECILSGLLSVD-GLKVLHMDRNDYYGGES 43 (342)
Q Consensus 4 ~~DViIiG~GiaGl~aA~~L~~~-G~~V~vlE~~~~~GG~~ 43 (342)
++||+|||||++|++||+.|+++ |++|+|+|++..+||..
T Consensus 92 ~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~ 132 (357)
T PLN02661 92 DTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGA 132 (357)
T ss_pred cCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccce
Confidence 58999999999999999999986 89999999999888744
No 109
>PRK09126 hypothetical protein; Provisional
Probab=99.02 E-value=2.3e-09 Score=98.83 Aligned_cols=38 Identities=29% Similarity=0.413 Sum_probs=35.2
Q ss_pred CCCcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCC
Q 019351 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY 39 (342)
Q Consensus 1 m~~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~ 39 (342)
|+ ++||+|||||++||++|..|+++|++|+|+|+++.+
T Consensus 1 ~~-~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~ 38 (392)
T PRK09126 1 MM-HSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLA 38 (392)
T ss_pred CC-cccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCcc
Confidence 55 489999999999999999999999999999998764
No 110
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=99.02 E-value=2e-10 Score=93.35 Aligned_cols=41 Identities=34% Similarity=0.442 Sum_probs=35.3
Q ss_pred cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCc
Q 019351 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS 44 (342)
Q Consensus 4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~ 44 (342)
++||+|||||++||+||++|+++|++|+|+|++..+||..+
T Consensus 17 ~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~ 57 (230)
T PF01946_consen 17 EYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMW 57 (230)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTT
T ss_pred cCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCcccc
Confidence 58999999999999999999999999999999999998876
No 111
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=99.02 E-value=5e-09 Score=99.17 Aligned_cols=56 Identities=18% Similarity=0.129 Sum_probs=44.9
Q ss_pred ChHHHHHHHHHHH-cCcEEEcCCccceEEEcCCCcEEEEEeC--C--cEEEcCEEEECCCCC
Q 019351 232 GELPQAFARLSAV-YGGTYMLNKPECKVEFDEEGKVVGVTSE--G--ETAKCKKVVCDPSYL 288 (342)
Q Consensus 232 ~~l~~~l~~~~~~-~G~~i~~~~~V~~i~~~~~~~~~~v~~~--g--~~~~a~~vI~~~~~~ 288 (342)
..+...|.+.+++ .|++|++++.|++|..+ ++++.++... + ..+.|+.||+|+|-+
T Consensus 128 ~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~-~g~v~Gv~~~~~~~~~~i~A~~VVlAtGG~ 188 (488)
T TIGR00551 128 REVITTLVKKALNHPNIRIIEGENALDLLIE-TGRVVGVWVWNRETVETCHADAVVLATGGA 188 (488)
T ss_pred HHHHHHHHHHHHhcCCcEEEECeEeeeeecc-CCEEEEEEEEECCcEEEEEcCEEEECCCcc
Confidence 4678888888887 69999999999999876 6777776652 2 368999999998754
No 112
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.02 E-value=8e-09 Score=99.72 Aligned_cols=55 Identities=16% Similarity=0.267 Sum_probs=44.2
Q ss_pred ChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe----CCc--EEEcCEEEECCC
Q 019351 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EGE--TAKCKKVVCDPS 286 (342)
Q Consensus 232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~----~g~--~~~a~~vI~~~~ 286 (342)
..+...|.+.+.+.|++++.++.++++..++++++.+|.. ++. .+.|+.||+|+|
T Consensus 148 ~~l~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATG 208 (591)
T PRK07057 148 HALLHTLYQQNVAAKTQFFVEWMALDLIRDADGDVLGVTALEMETGDVYILEAKTTLFATG 208 (591)
T ss_pred HHHHHHHHHHHHhcCCEEEeCcEEEEEEEcCCCeEEEEEEEEcCCCeEEEEECCeEEECCC
Confidence 4688889888888999999999999988753577887764 233 578999999876
No 113
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=99.01 E-value=1.9e-09 Score=99.15 Aligned_cols=57 Identities=12% Similarity=0.036 Sum_probs=44.7
Q ss_pred ChHHHHHHHHHHH-cCcEEEcCCccceEEEcCCCcEEEEEeCCcEEEcCEEEECCCCCC
Q 019351 232 GELPQAFARLSAV-YGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLP 289 (342)
Q Consensus 232 ~~l~~~l~~~~~~-~G~~i~~~~~V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~~~~ 289 (342)
..+.+.|.+.+.. .|++++++++|++|..+ ++.+.....+|.++.||.||.|.|.+.
T Consensus 105 ~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~-~~~~~v~~~~g~~~~ad~vV~AdG~~S 162 (382)
T TIGR01984 105 ADLGQALLSRLALLTNIQLYCPARYKEIIRN-QDYVRVTLDNGQQLRAKLLIAADGANS 162 (382)
T ss_pred HHHHHHHHHHHHhCCCcEEEcCCeEEEEEEc-CCeEEEEECCCCEEEeeEEEEecCCCh
Confidence 4677788888877 49999999999999876 455443333677899999999999764
No 114
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=99.01 E-value=1e-08 Score=95.76 Aligned_cols=62 Identities=11% Similarity=0.042 Sum_probs=49.4
Q ss_pred EeCCCCChHHHHHHHHHHHcCcEEEcCCccceEEEcC-CCcEEEEEe--CCcEEEcCEEEECCCC
Q 019351 226 YPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDE-EGKVVGVTS--EGETAKCKKVVCDPSY 287 (342)
Q Consensus 226 ~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~-~~~~~~v~~--~g~~~~a~~vI~~~~~ 287 (342)
++.++...+++.|.+.++++|++|+++++|++|..++ ++++++|.. ++.+++|+.||+|+|-
T Consensus 117 ~~~~~g~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIlAtGG 181 (432)
T TIGR02485 117 FLRGGGKALTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVLAAGG 181 (432)
T ss_pred eecCCHHHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEEcCCC
Confidence 4445566799999999999999999999999998752 466776665 3358999999998873
No 115
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=99.01 E-value=9e-09 Score=99.32 Aligned_cols=54 Identities=22% Similarity=0.268 Sum_probs=44.2
Q ss_pred hHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe----CCc--EEEcCEEEECCCC
Q 019351 233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EGE--TAKCKKVVCDPSY 287 (342)
Q Consensus 233 ~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~----~g~--~~~a~~vI~~~~~ 287 (342)
.+...|.+.+++.|++|++++.|++|..+ ++++.+|.. ++. .+.|+.||+|+|-
T Consensus 130 ~i~~~L~~~~~~~gv~i~~~~~v~~L~~~-~g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG 189 (566)
T TIGR01812 130 ALLHTLYEQCLKLGVSFFNEYFALDLIHD-DGRVRGVVAYDLKTGEIVFFRAKAVVLATGG 189 (566)
T ss_pred HHHHHHHHHHHHcCCEEEeccEEEEEEEe-CCEEEEEEEEECCCCcEEEEECCeEEECCCc
Confidence 57788888888889999999999999877 788877653 343 5899999998873
No 116
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=99.01 E-value=3.4e-09 Score=98.20 Aligned_cols=36 Identities=22% Similarity=0.409 Sum_probs=33.8
Q ss_pred CCCcccEEEECCCchHHHHHHhhhhCCCeEEEEcCC
Q 019351 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRN 36 (342)
Q Consensus 1 m~~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~ 36 (342)
|+..+||+|||||++||++|..|+++|++|+|+|++
T Consensus 1 ~m~~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~ 36 (405)
T PRK08850 1 MMQSVDVAIIGGGMVGLALAAALKESDLRIAVIEGQ 36 (405)
T ss_pred CCCcCCEEEECccHHHHHHHHHHHhCCCEEEEEcCC
Confidence 555789999999999999999999999999999996
No 117
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.01 E-value=1.1e-08 Score=98.65 Aligned_cols=43 Identities=23% Similarity=0.355 Sum_probs=38.1
Q ss_pred CC-CcccEEEECCCchHHHHHHhhhhCC---CeEEEEcCCCCCCCcC
Q 019351 1 MD-EEYDVIVLGTGLKECILSGLLSVDG---LKVLHMDRNDYYGGES 43 (342)
Q Consensus 1 m~-~~~DViIiG~GiaGl~aA~~L~~~G---~~V~vlE~~~~~GG~~ 43 (342)
|+ .++||+|||+|++||+||..++++| .+|+|+||....||.+
T Consensus 1 ~~~~~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~~~~s 47 (577)
T PRK06069 1 MEVLKYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMRSHS 47 (577)
T ss_pred CCceecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCCCCCc
Confidence 44 3689999999999999999999998 8999999998877754
No 118
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=99.01 E-value=4.8e-09 Score=96.61 Aligned_cols=55 Identities=15% Similarity=0.094 Sum_probs=42.9
Q ss_pred ChHHHHHHHHHHHcC-cEEEcCCccceEEEcCCCcEEEEEe-CCcEEEcCEEEECCCCCC
Q 019351 232 GELPQAFARLSAVYG-GTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLP 289 (342)
Q Consensus 232 ~~l~~~l~~~~~~~G-~~i~~~~~V~~i~~~~~~~~~~v~~-~g~~~~a~~vI~~~~~~~ 289 (342)
..+.+.|.+.+++.| ++++ ++.|+++..+ ++.+ .|++ +|.++.||.||.|.|.++
T Consensus 111 ~~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~-~~~~-~v~~~~g~~~~a~~vI~adG~~S 167 (388)
T PRK07608 111 SLIERALWAALRFQPNLTWF-PARAQGLEVD-PDAA-TLTLADGQVLRADLVVGADGAHS 167 (388)
T ss_pred HHHHHHHHHHHHhCCCcEEE-cceeEEEEec-CCeE-EEEECCCCEEEeeEEEEeCCCCc
Confidence 356777888888887 8888 9999999866 4544 4555 666899999999999875
No 119
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.01 E-value=3.8e-09 Score=102.67 Aligned_cols=39 Identities=31% Similarity=0.344 Sum_probs=35.7
Q ss_pred cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCc
Q 019351 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGE 42 (342)
Q Consensus 4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~ 42 (342)
++||+|||+|.+||+||..++++|.+|+|+||...+|+.
T Consensus 35 ~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~~~~~g 73 (640)
T PRK07573 35 KFDVIVVGTGLAGASAAATLGELGYNVKVFCYQDSPRRA 73 (640)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCcEEEEecCCCCCcc
Confidence 589999999999999999999999999999998877643
No 120
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.01 E-value=4.2e-09 Score=101.24 Aligned_cols=54 Identities=19% Similarity=0.065 Sum_probs=44.5
Q ss_pred ChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe----CC--cEEEcCEEEECCC
Q 019351 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EG--ETAKCKKVVCDPS 286 (342)
Q Consensus 232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~----~g--~~~~a~~vI~~~~ 286 (342)
..++..|.+.+...|+++++++.++++..+ ++++++|.. ++ ..+.|+.||+|+|
T Consensus 136 ~~i~~~L~~~~~~~gv~i~~~~~~~~Li~~-~g~v~Gv~~~~~~~g~~~~i~AkaVVLATG 195 (566)
T PRK06452 136 MALLHTLFERTSGLNVDFYNEWFSLDLVTD-NKKVVGIVAMQMKTLTPFFFKTKAVVLATG 195 (566)
T ss_pred HHHHHHHHHHHHhCCCEEEeCcEEEEEEEE-CCEEEEEEEEECCCCeEEEEEeCeEEECCC
Confidence 357788888888889999999999999887 788988865 22 2578999999886
No 121
>PRK07045 putative monooxygenase; Reviewed
Probab=99.01 E-value=6e-09 Score=95.97 Aligned_cols=57 Identities=18% Similarity=0.158 Sum_probs=42.2
Q ss_pred hHHHHHHHHHH-HcCcEEEcCCccceEEEcCCCcEEEEEe-CCcEEEcCEEEECCCCCC
Q 019351 233 ELPQAFARLSA-VYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLP 289 (342)
Q Consensus 233 ~l~~~l~~~~~-~~G~~i~~~~~V~~i~~~~~~~~~~v~~-~g~~~~a~~vI~~~~~~~ 289 (342)
.+.+.|.+.+. ..|++++++++|+.|+.++++.++.|+. +|+++.||.||.|.|..+
T Consensus 107 ~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~vIgADG~~S 165 (388)
T PRK07045 107 QLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVLVGADGARS 165 (388)
T ss_pred HHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEECCEEEECCCCCh
Confidence 34455555554 3589999999999998763444455665 677899999999998764
No 122
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.01 E-value=3.9e-09 Score=101.71 Aligned_cols=55 Identities=15% Similarity=0.181 Sum_probs=44.7
Q ss_pred ChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe----CCc--EEEcCEEEECCCC
Q 019351 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EGE--TAKCKKVVCDPSY 287 (342)
Q Consensus 232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~----~g~--~~~a~~vI~~~~~ 287 (342)
..+...|.+.+++.|++|++++.|++|..+ ++++.++.. ++. .+.|+.||+|+|-
T Consensus 135 ~~i~~~L~~~~~~~gi~i~~~t~v~~L~~~-~g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG 195 (575)
T PRK05945 135 HAILHELVNNLRRYGVTIYDEWYVMRLILE-DNQAKGVVMYHIADGRLEVVRAKAVMFATGG 195 (575)
T ss_pred HHHHHHHHHHHhhCCCEEEeCcEEEEEEEE-CCEEEEEEEEEcCCCeEEEEECCEEEECCCC
Confidence 468888999888899999999999999876 677776653 343 5899999998864
No 123
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=99.00 E-value=6.4e-09 Score=100.80 Aligned_cols=55 Identities=9% Similarity=0.198 Sum_probs=44.1
Q ss_pred ChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe----CCc--EEEcCEEEECCC
Q 019351 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EGE--TAKCKKVVCDPS 286 (342)
Q Consensus 232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~----~g~--~~~a~~vI~~~~ 286 (342)
..+...|.+.+++.|++|+.++.++++..++++++.++.. +|. .+.|+.||+|+|
T Consensus 187 ~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATG 247 (635)
T PLN00128 187 HAMLHTLYGQAMKHNTQFFVEYFALDLIMDSDGACQGVIALNMEDGTLHRFRAHSTILATG 247 (635)
T ss_pred HHHHHHHHHHHHhCCCEEEEeeEEEEEEEcCCCEEEEEEEEEcCCCeEEEEEcCeEEECCC
Confidence 4678889998888899999999999987653577887764 343 578999999876
No 124
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.00 E-value=7.6e-09 Score=96.18 Aligned_cols=38 Identities=24% Similarity=0.413 Sum_probs=35.0
Q ss_pred CCcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCC
Q 019351 2 DEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY 39 (342)
Q Consensus 2 ~~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~ 39 (342)
+..+||+|||||++||++|..|+++|++|+|+|+++..
T Consensus 16 ~~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~ 53 (415)
T PRK07364 16 SLTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAE 53 (415)
T ss_pred ccccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCcc
Confidence 34689999999999999999999999999999998754
No 125
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.00 E-value=6e-09 Score=95.98 Aligned_cols=56 Identities=21% Similarity=0.099 Sum_probs=42.0
Q ss_pred ChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCcEEEcCEEEECCCCCC
Q 019351 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLP 289 (342)
Q Consensus 232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~-~g~~~~a~~vI~~~~~~~ 289 (342)
..+.+.|.+.+++.+...+++++|++++.+ ++.+. +++ ++.++.||.||.|.|.++
T Consensus 111 ~~l~~~L~~~~~~~~~~~~~~~~v~~i~~~-~~~~~-v~~~~g~~~~a~~vI~AdG~~S 167 (388)
T PRK07494 111 WLLNRALEARVAELPNITRFGDEAESVRPR-EDEVT-VTLADGTTLSARLVVGADGRNS 167 (388)
T ss_pred HHHHHHHHHHHhcCCCcEEECCeeEEEEEc-CCeEE-EEECCCCEEEEeEEEEecCCCc
Confidence 356667777777765445889999999876 55544 444 677899999999998764
No 126
>PRK02106 choline dehydrogenase; Validated
Probab=98.99 E-value=1.4e-08 Score=97.86 Aligned_cols=38 Identities=32% Similarity=0.563 Sum_probs=34.8
Q ss_pred CCCcccEEEECCCchHHHHHHhhhh-CCCeEEEEcCCCC
Q 019351 1 MDEEYDVIVLGTGLKECILSGLLSV-DGLKVLHMDRNDY 38 (342)
Q Consensus 1 m~~~~DViIiG~GiaGl~aA~~L~~-~G~~V~vlE~~~~ 38 (342)
|..+||+||||||.+|+++|.+|++ +|++|+|||+++.
T Consensus 2 ~~~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~~ 40 (560)
T PRK02106 2 TTMEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGGP 40 (560)
T ss_pred CCCcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCCc
Confidence 4567999999999999999999999 8999999999854
No 127
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=98.99 E-value=1.4e-08 Score=93.57 Aligned_cols=35 Identities=23% Similarity=0.478 Sum_probs=33.0
Q ss_pred cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCC
Q 019351 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY 38 (342)
Q Consensus 4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~ 38 (342)
++||+|||||++||++|+.|+++|++|+|+|+++.
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~ 36 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSR 36 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCc
Confidence 47999999999999999999999999999999874
No 128
>PRK06834 hypothetical protein; Provisional
Probab=98.99 E-value=6.4e-09 Score=98.20 Aligned_cols=55 Identities=15% Similarity=0.102 Sum_probs=43.5
Q ss_pred hHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCcEEEcCEEEECCCCCC
Q 019351 233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLP 289 (342)
Q Consensus 233 ~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~-~g~~~~a~~vI~~~~~~~ 289 (342)
.+-..|.+.+++.|++|+.+++|++++.+ ++.+. ++. ++.+++||.||.|.|.++
T Consensus 101 ~le~~L~~~l~~~gv~i~~~~~v~~v~~~-~~~v~-v~~~~g~~i~a~~vVgADG~~S 156 (488)
T PRK06834 101 HIERILAEWVGELGVPIYRGREVTGFAQD-DTGVD-VELSDGRTLRAQYLVGCDGGRS 156 (488)
T ss_pred HHHHHHHHHHHhCCCEEEcCCEEEEEEEc-CCeEE-EEECCCCEEEeCEEEEecCCCC
Confidence 45566777778889999999999999887 55544 444 667899999999998765
No 129
>PRK07395 L-aspartate oxidase; Provisional
Probab=98.98 E-value=5.7e-09 Score=99.81 Aligned_cols=55 Identities=7% Similarity=0.119 Sum_probs=42.8
Q ss_pred ChHHHHHHHHHHHc-CcEEEcCCccceEEEcC-CCcEEEEEe--CCc--EEEcCEEEECCC
Q 019351 232 GELPQAFARLSAVY-GGTYMLNKPECKVEFDE-EGKVVGVTS--EGE--TAKCKKVVCDPS 286 (342)
Q Consensus 232 ~~l~~~l~~~~~~~-G~~i~~~~~V~~i~~~~-~~~~~~v~~--~g~--~~~a~~vI~~~~ 286 (342)
..++..|.+.+++. |++|++++.|+++..++ ++++.+|.. ++. .+.|+.||+|+|
T Consensus 134 ~~i~~~L~~~~~~~~gi~i~~~~~v~~Li~~~~~g~v~Gv~~~~~g~~~~i~AkaVILATG 194 (553)
T PRK07395 134 RAIVTTLTEQVLQRPNIEIISQALALSLWLEPETGRCQGISLLYQGQITWLRAGAVILATG 194 (553)
T ss_pred HHHHHHHHHHHhhcCCcEEEECcChhhheecCCCCEEEEEEEEECCeEEEEEcCEEEEcCC
Confidence 46788888887654 99999999999998752 367887765 443 378999999876
No 130
>PRK08401 L-aspartate oxidase; Provisional
Probab=98.98 E-value=3e-08 Score=93.30 Aligned_cols=56 Identities=16% Similarity=0.216 Sum_probs=46.7
Q ss_pred ChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCcEEEcCEEEECCCCCC
Q 019351 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLP 289 (342)
Q Consensus 232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~~~~ 289 (342)
..+.+.|.+.+++.|++++.+ .++.+..+ +++++++.+++..+.|+.||+|+|-+.
T Consensus 120 ~~i~~~L~~~~~~~gv~i~~~-~v~~l~~~-~g~v~Gv~~~g~~i~a~~VVLATGG~~ 175 (466)
T PRK08401 120 KHIIKILYKHARELGVNFIRG-FAEELAIK-NGKAYGVFLDGELLKFDATVIATGGFS 175 (466)
T ss_pred HHHHHHHHHHHHhcCCEEEEe-EeEEEEee-CCEEEEEEECCEEEEeCeEEECCCcCc
Confidence 468889999999999999876 78888766 678888888888899999999987543
No 131
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=98.96 E-value=3.2e-09 Score=88.61 Aligned_cols=37 Identities=27% Similarity=0.450 Sum_probs=31.6
Q ss_pred EEECCCchHHHHHHhhhhCCCe-EEEEcCCCCCCCcCc
Q 019351 8 IVLGTGLKECILSGLLSVDGLK-VLHMDRNDYYGGESS 44 (342)
Q Consensus 8 iIiG~GiaGl~aA~~L~~~G~~-V~vlE~~~~~GG~~~ 44 (342)
+|||||++||++|+.|.++|.+ |+|||+++.+||.+.
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~ 38 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWR 38 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHH
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeE
Confidence 7999999999999999999998 999999999999876
No 132
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=98.95 E-value=9.4e-09 Score=97.40 Aligned_cols=42 Identities=38% Similarity=0.460 Sum_probs=37.2
Q ss_pred CCCcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCC-CCCCc
Q 019351 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND-YYGGE 42 (342)
Q Consensus 1 m~~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~-~~GG~ 42 (342)
|..+|||+|||||+||+.||+.+++.|.+|+++|++. .+|+.
T Consensus 1 ~~~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m 43 (618)
T PRK05192 1 MPEEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQM 43 (618)
T ss_pred CCccceEEEECchHHHHHHHHHHHHcCCcEEEEeccccccccc
Confidence 5567999999999999999999999999999999973 56653
No 133
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.95 E-value=1.1e-08 Score=98.65 Aligned_cols=56 Identities=18% Similarity=0.121 Sum_probs=44.4
Q ss_pred ChHHHHHHHHHHHcCcEEEcCCccceEEEcCC---CcEEEEEe----CCc--EEEcCEEEECCCC
Q 019351 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEE---GKVVGVTS----EGE--TAKCKKVVCDPSY 287 (342)
Q Consensus 232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~---~~~~~v~~----~g~--~~~a~~vI~~~~~ 287 (342)
..+...|.+.+++.|++|++++.|++|..+++ +++.++.. +++ .+.|+.||+|+|-
T Consensus 140 ~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG 204 (583)
T PRK08205 140 HMILQTLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGG 204 (583)
T ss_pred HHHHHHHHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCC
Confidence 46788899989889999999999999987622 67877754 343 5789999998863
No 134
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.94 E-value=6.6e-08 Score=87.98 Aligned_cols=58 Identities=16% Similarity=0.238 Sum_probs=49.7
Q ss_pred ChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CC--cEEEcCEEEECCCCC-Cc
Q 019351 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EG--ETAKCKKVVCDPSYL-PN 290 (342)
Q Consensus 232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~-~g--~~~~a~~vI~~~~~~-~~ 290 (342)
.++.++|.++++++|++++.+++|+++..+ +++++.|.+ ++ .++.||+||+|+|.| +.
T Consensus 263 ~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~-~~~v~~V~t~~g~~~~l~AD~vVLAaGaw~S~ 324 (419)
T TIGR03378 263 IRLEEALKHRFEQLGGVMLPGDRVLRAEFE-GNRVTRIHTRNHRDIPLRADHFVLASGSFFSN 324 (419)
T ss_pred HHHHHHHHHHHHHCCCEEEECcEEEEEEee-CCeEEEEEecCCccceEECCEEEEccCCCcCH
Confidence 477888999999999999999999999887 777888876 43 489999999999988 53
No 135
>PLN02697 lycopene epsilon cyclase
Probab=98.94 E-value=1.1e-08 Score=96.57 Aligned_cols=55 Identities=15% Similarity=0.194 Sum_probs=42.4
Q ss_pred hHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEE-eCCcEEEcCEEEECCCCCC
Q 019351 233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVT-SEGETAKCKKVVCDPSYLP 289 (342)
Q Consensus 233 ~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~-~~g~~~~a~~vI~~~~~~~ 289 (342)
.+.+.|.+.+.+.|+++ .++.|++|..+ ++.+..++ .+|.++.|+.||.|.|.++
T Consensus 193 ~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~-~~~~~vv~~~dG~~i~A~lVI~AdG~~S 248 (529)
T PLN02697 193 LLHEELLRRCVESGVSY-LSSKVDRITEA-SDGLRLVACEDGRVIPCRLATVASGAAS 248 (529)
T ss_pred HHHHHHHHHHHhcCCEE-EeeEEEEEEEc-CCcEEEEEEcCCcEEECCEEEECCCcCh
Confidence 45567777777789998 67899999876 45444444 4778899999999999876
No 136
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.94 E-value=1.7e-08 Score=98.04 Aligned_cols=39 Identities=23% Similarity=0.267 Sum_probs=35.9
Q ss_pred cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCc
Q 019351 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGE 42 (342)
Q Consensus 4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~ 42 (342)
++||+|||+|++||+||..++++|.+|+|+||.+..||.
T Consensus 8 ~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~~g~ 46 (626)
T PRK07803 8 SYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFGKAH 46 (626)
T ss_pred eecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCCCCc
Confidence 589999999999999999999999999999999876653
No 137
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.94 E-value=6.6e-08 Score=92.88 Aligned_cols=42 Identities=29% Similarity=0.587 Sum_probs=39.1
Q ss_pred CcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCc
Q 019351 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS 44 (342)
Q Consensus 3 ~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~ 44 (342)
+++||+|||+|.+|++||..++++|.+|+||||.+.+||.+.
T Consensus 6 ~~~DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~~~gG~~~ 47 (557)
T PRK07843 6 QEYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHYGGSTA 47 (557)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCcccc
Confidence 469999999999999999999999999999999999988654
No 138
>PRK07236 hypothetical protein; Provisional
Probab=98.94 E-value=2e-08 Score=92.38 Aligned_cols=35 Identities=23% Similarity=0.238 Sum_probs=32.8
Q ss_pred cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCC
Q 019351 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY 38 (342)
Q Consensus 4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~ 38 (342)
..||+|||||++||++|..|+++|.+|+|+|+++.
T Consensus 6 ~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (386)
T PRK07236 6 GPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPT 40 (386)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 37999999999999999999999999999999864
No 139
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=98.92 E-value=3.2e-08 Score=91.22 Aligned_cols=55 Identities=16% Similarity=0.044 Sum_probs=42.2
Q ss_pred hHHHHHHHHHHHc-CcEEEcCCccceEEEcCCCcEEEEEe-CCcEEEcCEEEECCCCCC
Q 019351 233 ELPQAFARLSAVY-GGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLP 289 (342)
Q Consensus 233 ~l~~~l~~~~~~~-G~~i~~~~~V~~i~~~~~~~~~~v~~-~g~~~~a~~vI~~~~~~~ 289 (342)
.+.+.|.+.++.. |++++.+++|+++..+ ++. +.|++ ++.+++||.||.|.|.++
T Consensus 113 ~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~-~~~-~~v~~~~g~~~~a~~vI~AdG~~S 169 (391)
T PRK08020 113 VLQLALWQALEAHPNVTLRCPASLQALQRD-DDG-WELTLADGEEIQAKLVIGADGANS 169 (391)
T ss_pred HHHHHHHHHHHcCCCcEEEcCCeeEEEEEc-CCe-EEEEECCCCEEEeCEEEEeCCCCc
Confidence 4556666666666 9999999999999876 444 34544 677899999999999875
No 140
>PLN02463 lycopene beta cyclase
Probab=98.92 E-value=1.4e-08 Score=94.41 Aligned_cols=54 Identities=17% Similarity=0.167 Sum_probs=40.5
Q ss_pred hHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCcEEEcCEEEECCCCCC
Q 019351 233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLP 289 (342)
Q Consensus 233 ~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~-~g~~~~a~~vI~~~~~~~ 289 (342)
.+.+.|.+.+.+.|++++ .++|++|+.+ +++ ..|++ +|.+++||.||.|.|..+
T Consensus 115 ~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~-~~~-~~V~~~dG~~i~A~lVI~AdG~~s 169 (447)
T PLN02463 115 KLKSKMLERCIANGVQFH-QAKVKKVVHE-ESK-SLVVCDDGVKIQASLVLDATGFSR 169 (447)
T ss_pred HHHHHHHHHHhhcCCEEE-eeEEEEEEEc-CCe-EEEEECCCCEEEcCEEEECcCCCc
Confidence 445566677777799986 5789999876 554 44555 677999999999998764
No 141
>PRK07588 hypothetical protein; Provisional
Probab=98.92 E-value=1.2e-08 Score=94.00 Aligned_cols=55 Identities=9% Similarity=0.013 Sum_probs=40.3
Q ss_pred hHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCcEEEcCEEEECCCCCC
Q 019351 233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLP 289 (342)
Q Consensus 233 ~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~~~~ 289 (342)
.|...|.+.+ ..|++|+++++|++|+.+ ++.+.....+|++++||.||.|.|..+
T Consensus 104 ~l~~~L~~~~-~~~v~i~~~~~v~~i~~~-~~~v~v~~~~g~~~~~d~vIgADG~~S 158 (391)
T PRK07588 104 DLAAAIYTAI-DGQVETIFDDSIATIDEH-RDGVRVTFERGTPRDFDLVIGADGLHS 158 (391)
T ss_pred HHHHHHHHhh-hcCeEEEeCCEEeEEEEC-CCeEEEEECCCCEEEeCEEEECCCCCc
Confidence 3444555543 347999999999999876 555543334788899999999999764
No 142
>PRK08071 L-aspartate oxidase; Provisional
Probab=98.91 E-value=2e-08 Score=95.46 Aligned_cols=54 Identities=17% Similarity=0.145 Sum_probs=42.4
Q ss_pred ChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe---CCc--EEEcCEEEECCCC
Q 019351 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS---EGE--TAKCKKVVCDPSY 287 (342)
Q Consensus 232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~---~g~--~~~a~~vI~~~~~ 287 (342)
..+...|.+.++ .|++|++++.|++|..+ ++++.++.. +++ .+.|+.||+|+|-
T Consensus 130 ~~i~~~L~~~~~-~gV~i~~~~~v~~Li~~-~g~v~Gv~~~~~~g~~~~i~Ak~VVlATGG 188 (510)
T PRK08071 130 KNLLEHLLQELV-PHVTVVEQEMVIDLIIE-NGRCIGVLTKDSEGKLKRYYADYVVLASGG 188 (510)
T ss_pred HHHHHHHHHHHh-cCCEEEECeEhhheeec-CCEEEEEEEEECCCcEEEEEcCeEEEecCC
Confidence 357788888775 69999999999999876 677877765 232 6889999998864
No 143
>PLN02985 squalene monooxygenase
Probab=98.91 E-value=3e-08 Score=94.02 Aligned_cols=36 Identities=31% Similarity=0.447 Sum_probs=33.2
Q ss_pred CcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCC
Q 019351 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY 38 (342)
Q Consensus 3 ~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~ 38 (342)
..+||+|||||++|+++|+.|+++|++|+|+|+...
T Consensus 42 ~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~ 77 (514)
T PLN02985 42 GATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLR 77 (514)
T ss_pred CCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCC
Confidence 358999999999999999999999999999999753
No 144
>PRK08244 hypothetical protein; Provisional
Probab=98.90 E-value=2.6e-08 Score=94.69 Aligned_cols=56 Identities=18% Similarity=0.086 Sum_probs=41.9
Q ss_pred hHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEE-EEe-CC-cEEEcCEEEECCCCCC
Q 019351 233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVG-VTS-EG-ETAKCKKVVCDPSYLP 289 (342)
Q Consensus 233 ~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~-v~~-~g-~~~~a~~vI~~~~~~~ 289 (342)
.+-+.|.+.+++.|++++.+++|++++.+ ++++.. +.. +| .+++||.||.|.|..+
T Consensus 101 ~le~~L~~~~~~~gv~v~~~~~v~~i~~~-~~~v~v~~~~~~g~~~i~a~~vVgADG~~S 159 (493)
T PRK08244 101 ETEKVLEEHARSLGVEIFRGAEVLAVRQD-GDGVEVVVRGPDGLRTLTSSYVVGADGAGS 159 (493)
T ss_pred HHHHHHHHHHHHcCCeEEeCCEEEEEEEc-CCeEEEEEEeCCccEEEEeCEEEECCCCCh
Confidence 45556677777789999999999999876 555432 222 34 4799999999998764
No 145
>PRK08275 putative oxidoreductase; Provisional
Probab=98.89 E-value=3.8e-08 Score=94.58 Aligned_cols=56 Identities=16% Similarity=0.147 Sum_probs=44.2
Q ss_pred ChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe----CCc--EEEcCEEEECCCC
Q 019351 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EGE--TAKCKKVVCDPSY 287 (342)
Q Consensus 232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~----~g~--~~~a~~vI~~~~~ 287 (342)
..+...|.+.+++.|++|++++.|++|..++++++.++.. ++. .+.|+.||+|+|-
T Consensus 137 ~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG 198 (554)
T PRK08275 137 HDIKKVLYRQLKRARVLITNRIMATRLLTDADGRVAGALGFDCRTGEFLVIRAKAVILCCGA 198 (554)
T ss_pred HHHHHHHHHHHHHCCCEEEcceEEEEEEEcCCCeEEEEEEEecCCCcEEEEECCEEEECCCC
Confidence 3678889898888999999999999998753566777653 343 4889999998764
No 146
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=98.89 E-value=3.1e-08 Score=95.05 Aligned_cols=38 Identities=29% Similarity=0.440 Sum_probs=35.1
Q ss_pred cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCC
Q 019351 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG 41 (342)
Q Consensus 4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG 41 (342)
.+||+|||||++||++|..|+++|.+|+|+|+++.++.
T Consensus 10 ~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~ 47 (538)
T PRK06183 10 DTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYD 47 (538)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Confidence 58999999999999999999999999999999976543
No 147
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.89 E-value=6.2e-08 Score=92.96 Aligned_cols=56 Identities=16% Similarity=0.104 Sum_probs=43.2
Q ss_pred ChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe----CCc--EEEcCEEEECCCC
Q 019351 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EGE--TAKCKKVVCDPSY 287 (342)
Q Consensus 232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~----~g~--~~~a~~vI~~~~~ 287 (342)
..+...|.+.+++.|++|++++.|+++..+++++++++.. ++. .+.|+.||+|+|-
T Consensus 134 ~~i~~~L~~~~~~~gv~i~~~t~v~~Li~~~~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG 195 (543)
T PRK06263 134 HEMMMGLMEYLIKERIKILEEVMAIKLIVDENREVIGAIFLDLRNGEIFPIYAKATILATGG 195 (543)
T ss_pred HHHHHHHHHHHhcCCCEEEeCeEeeeeEEeCCcEEEEEEEEECCCCcEEEEEcCcEEECCCC
Confidence 4677888888888899999999999998762334777653 343 5899999998863
No 148
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=98.89 E-value=3.1e-08 Score=95.31 Aligned_cols=37 Identities=27% Similarity=0.364 Sum_probs=34.4
Q ss_pred CcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCC
Q 019351 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY 39 (342)
Q Consensus 3 ~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~ 39 (342)
.++||+|||||++||++|+.|+++|.+|+|+|+++.+
T Consensus 22 ~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~ 58 (547)
T PRK08132 22 ARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTL 58 (547)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCC
Confidence 4589999999999999999999999999999998754
No 149
>PRK07512 L-aspartate oxidase; Provisional
Probab=98.88 E-value=2.9e-08 Score=94.37 Aligned_cols=54 Identities=19% Similarity=0.226 Sum_probs=43.8
Q ss_pred ChHHHHHHHHHHHc-CcEEEcCCccceEEEcCCCcEEEEEe--CCc--EEEcCEEEECCC
Q 019351 232 GELPQAFARLSAVY-GGTYMLNKPECKVEFDEEGKVVGVTS--EGE--TAKCKKVVCDPS 286 (342)
Q Consensus 232 ~~l~~~l~~~~~~~-G~~i~~~~~V~~i~~~~~~~~~~v~~--~g~--~~~a~~vI~~~~ 286 (342)
..+...|.+.+++. |++|+.++.|++|..+ +++++++.. +++ .+.|+.||+|+|
T Consensus 136 ~~l~~~L~~~~~~~~gV~i~~~~~v~~Li~~-~g~v~Gv~~~~~~~~~~i~Ak~VVLATG 194 (513)
T PRK07512 136 AAIMRALIAAVRATPSITVLEGAEARRLLVD-DGAVAGVLAATAGGPVVLPARAVVLATG 194 (513)
T ss_pred HHHHHHHHHHHHhCCCCEEEECcChhheeec-CCEEEEEEEEeCCeEEEEECCEEEEcCC
Confidence 46888898888775 8999999999999876 678887765 333 589999998875
No 150
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=98.88 E-value=2.2e-08 Score=92.26 Aligned_cols=37 Identities=24% Similarity=0.338 Sum_probs=34.3
Q ss_pred cEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCc
Q 019351 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGE 42 (342)
Q Consensus 6 DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~ 42 (342)
||+|||||++|+++|+.|+++|++|+|+|+++..|+.
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~ 37 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGN 37 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCC
Confidence 8999999999999999999999999999998776653
No 151
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=98.88 E-value=7.3e-08 Score=93.37 Aligned_cols=55 Identities=13% Similarity=0.095 Sum_probs=42.5
Q ss_pred ChHHHHHHHHHHHcC-cEEEcCCccceEEEcCCCcEEEEEe----CCc--EEEcCEEEECCCC
Q 019351 232 GELPQAFARLSAVYG-GTYMLNKPECKVEFDEEGKVVGVTS----EGE--TAKCKKVVCDPSY 287 (342)
Q Consensus 232 ~~l~~~l~~~~~~~G-~~i~~~~~V~~i~~~~~~~~~~v~~----~g~--~~~a~~vI~~~~~ 287 (342)
..+...|.+.+++.| ++|+.++.|++|..+ ++++++|.. ++. .+.|+.||+|+|-
T Consensus 132 ~~~~~~L~~~a~~~ggV~i~~~~~v~~Li~~-~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG 193 (608)
T PRK06854 132 ESYKPIVAEAAKKALGDNVLNRVFITDLLVD-DNRIAGAVGFSVRENKFYVFKAKAVIVATGG 193 (608)
T ss_pred HHHHHHHHHHHHhcCCCEEEeCCEEEEEEEe-CCEEEEEEEEEccCCcEEEEECCEEEECCCc
Confidence 356777878887775 999999999999876 677777642 343 6899999998873
No 152
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.88 E-value=6.2e-10 Score=100.89 Aligned_cols=71 Identities=21% Similarity=0.231 Sum_probs=53.8
Q ss_pred CCceEEeCCC--CChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe----CCc--EEEcCEEEECCCCCCcc
Q 019351 221 GSPYIYPLYG--LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EGE--TAKCKKVVCDPSYLPNK 291 (342)
Q Consensus 221 ~~~~~~~~gG--~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~----~g~--~~~a~~vI~~~~~~~~~ 291 (342)
...+.|..|- -.++..+++=.|..+|+.+..+.+|.++..++++++.++.. .|+ .|+|+.||.|+|+..+.
T Consensus 211 ~Ga~VYyDGQ~nDaRmnl~vAlTA~r~GA~v~Nh~ev~~Llkd~~~kv~Ga~~rD~iTG~e~~I~Ak~VVNATGpfsDs 289 (680)
T KOG0042|consen 211 KGAMVYYDGQHNDARMNLAVALTAARNGATVLNHVEVVSLLKDKDGKVIGARARDHITGKEYEIRAKVVVNATGPFSDS 289 (680)
T ss_pred eeEEEEecCCCchHHHHHHHHHHHHhcchhhhhHHHHHHHhhCCCCceeeeEEEEeecCcEEEEEEEEEEeCCCCccHH
Confidence 3455666553 45667777777788999999999999998876677777654 455 47899999999988654
No 153
>PRK06753 hypothetical protein; Provisional
Probab=98.88 E-value=1.2e-08 Score=93.43 Aligned_cols=35 Identities=20% Similarity=0.415 Sum_probs=32.9
Q ss_pred cEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCC
Q 019351 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYG 40 (342)
Q Consensus 6 DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~G 40 (342)
||+|||||++||++|..|+++|++|+|+|+++.+.
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~ 36 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVK 36 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccc
Confidence 79999999999999999999999999999987653
No 154
>PLN02815 L-aspartate oxidase
Probab=98.87 E-value=2.1e-08 Score=96.42 Aligned_cols=39 Identities=15% Similarity=0.294 Sum_probs=36.2
Q ss_pred cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcC
Q 019351 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES 43 (342)
Q Consensus 4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~ 43 (342)
++||+|||+|++||+||+.+++.| +|+|+||.+..||.+
T Consensus 29 ~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~gg~s 67 (594)
T PLN02815 29 YFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHESNT 67 (594)
T ss_pred ccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCCCCcH
Confidence 589999999999999999999999 999999999888754
No 155
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=98.87 E-value=3.1e-08 Score=96.60 Aligned_cols=54 Identities=15% Similarity=0.090 Sum_probs=43.6
Q ss_pred ChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe----CCc--EEEcCEEEECCC
Q 019351 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EGE--TAKCKKVVCDPS 286 (342)
Q Consensus 232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~----~g~--~~~a~~vI~~~~ 286 (342)
..+...|.+.+++.|++|+.++.|++|..+ ++++.++.. +|. .+.|+.||+|+|
T Consensus 158 ~~l~~~L~~~~~~~gv~i~~~~~~~~Li~~-~g~v~Gv~~~~~~~G~~~~i~AkaVVLATG 217 (657)
T PRK08626 158 HTMLYAVDNEAIKLGVPVHDRKEAIALIHD-GKRCYGAVVRCLITGELRAYVAKATLIATG 217 (657)
T ss_pred HHHHHHHHHHHHhCCCEEEeeEEEEEEEEE-CCEEEEEEEEEcCCCcEEEEEcCeEEECCC
Confidence 457778888888999999999999999877 778777654 343 467999999886
No 156
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.87 E-value=1.8e-08 Score=93.09 Aligned_cols=54 Identities=26% Similarity=0.190 Sum_probs=39.8
Q ss_pred HHHHHHHHHHH-cCcEEEcCCccceEEEcCCCcEEEEEe-CCcEEEcCEEEECCCCCC
Q 019351 234 LPQAFARLSAV-YGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLP 289 (342)
Q Consensus 234 l~~~l~~~~~~-~G~~i~~~~~V~~i~~~~~~~~~~v~~-~g~~~~a~~vI~~~~~~~ 289 (342)
+-+.|.+.+.+ .|++++++++|+++..+ ++++. |++ ++.++.||.||.|.|.++
T Consensus 114 l~~~l~~~~~~~~g~~~~~~~~v~~i~~~-~~~~~-v~~~~g~~~~a~~vI~AdG~~S 169 (395)
T PRK05732 114 VGQRLFALLDKAPGVTLHCPARVANVERT-QGSVR-VTLDDGETLTGRLLVAADGSHS 169 (395)
T ss_pred HHHHHHHHHhcCCCcEEEcCCEEEEEEEc-CCeEE-EEECCCCEEEeCEEEEecCCCh
Confidence 33445555544 48999999999999876 45444 555 667899999999999875
No 157
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=98.86 E-value=1.3e-07 Score=90.76 Aligned_cols=54 Identities=17% Similarity=0.176 Sum_probs=39.6
Q ss_pred hHHHHHHHHHH-HcCcEEEcCCccceEEEcCCCcEEEEEe--CCc---EEEcCEEEECCCC
Q 019351 233 ELPQAFARLSA-VYGGTYMLNKPECKVEFDEEGKVVGVTS--EGE---TAKCKKVVCDPSY 287 (342)
Q Consensus 233 ~l~~~l~~~~~-~~G~~i~~~~~V~~i~~~~~~~~~~v~~--~g~---~~~a~~vI~~~~~ 287 (342)
....++...+. ..+++|+.++.|++|..+ ++++++|+. .++ .+.|+.||+|+|.
T Consensus 194 s~~~~~l~~a~~r~nl~i~~~~~V~rI~~~-~~ra~GV~~~~~~~~~~~~~ak~VIlaAGa 253 (532)
T TIGR01810 194 SAARAYLHPAMKRPNLEVQTRAFVTKINFE-GNRATGVEFKKGGRKEHTEANKEVILSAGA 253 (532)
T ss_pred cHHHHHhhhhccCCCeEEEeCCEEEEEEec-CCeEEEEEEEeCCcEEEEEEeeeEEEccCC
Confidence 33444455444 457999999999999987 778888876 332 2578899998875
No 158
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=98.85 E-value=7.5e-08 Score=88.65 Aligned_cols=35 Identities=23% Similarity=0.448 Sum_probs=32.9
Q ss_pred cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCC
Q 019351 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY 38 (342)
Q Consensus 4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~ 38 (342)
.+||+|||||++||++|..|+++|++|+|+|+++.
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~ 36 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSR 36 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 36999999999999999999999999999999874
No 159
>PRK06126 hypothetical protein; Provisional
Probab=98.84 E-value=2.6e-08 Score=95.88 Aligned_cols=36 Identities=25% Similarity=0.329 Sum_probs=33.5
Q ss_pred CcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCC
Q 019351 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY 38 (342)
Q Consensus 3 ~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~ 38 (342)
.++||+|||||++||++|..|+++|++|+|+|+++.
T Consensus 6 ~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~ 41 (545)
T PRK06126 6 SETPVLIVGGGPVGLALALDLGRRGVDSILVERKDG 41 (545)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 358999999999999999999999999999999763
No 160
>PRK05868 hypothetical protein; Validated
Probab=98.82 E-value=6.9e-08 Score=88.32 Aligned_cols=34 Identities=21% Similarity=0.254 Sum_probs=32.2
Q ss_pred cEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCC
Q 019351 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY 39 (342)
Q Consensus 6 DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~ 39 (342)
||+|||||++||++|+.|+++|++|+|+|+++.+
T Consensus 3 ~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~ 36 (372)
T PRK05868 3 TVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGL 36 (372)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Confidence 8999999999999999999999999999998654
No 161
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=98.82 E-value=1.2e-07 Score=98.25 Aligned_cols=41 Identities=29% Similarity=0.471 Sum_probs=38.6
Q ss_pred cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCc
Q 019351 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS 44 (342)
Q Consensus 4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~ 44 (342)
++||+|||+|.+||+||..++++|.+|+|+||.+..||.+.
T Consensus 409 ~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG~s~ 449 (1167)
T PTZ00306 409 PARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGGNSA 449 (1167)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCCchh
Confidence 58999999999999999999999999999999999999764
No 162
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=98.81 E-value=2e-07 Score=84.27 Aligned_cols=55 Identities=18% Similarity=0.248 Sum_probs=44.7
Q ss_pred CChHHHHHHHHHHHc-CcEEEcCCccceEEEcCCCcEEEEEe------CCcEEEcCEEEECCC
Q 019351 231 LGELPQAFARLSAVY-GGTYMLNKPECKVEFDEEGKVVGVTS------EGETAKCKKVVCDPS 286 (342)
Q Consensus 231 ~~~l~~~l~~~~~~~-G~~i~~~~~V~~i~~~~~~~~~~v~~------~g~~~~a~~vI~~~~ 286 (342)
++.|++.|.+.+++. |++++++++|+.|++.+++. |.|++ +..+++|+.|++.+|
T Consensus 180 FG~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~-W~v~~~~~~~~~~~~v~a~FVfvGAG 241 (488)
T PF06039_consen 180 FGALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGR-WEVKVKDLKTGEKREVRAKFVFVGAG 241 (488)
T ss_pred HHHHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCC-EEEEEEecCCCCeEEEECCEEEECCc
Confidence 789999999999888 99999999999999984554 44443 335799999988765
No 163
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.81 E-value=1e-07 Score=87.40 Aligned_cols=56 Identities=9% Similarity=-0.006 Sum_probs=43.5
Q ss_pred ChHHHHHHHHHHHcC-cEEEcCCccceEEEcCCCcEEEEEeCCcEEEcCEEEECCCCCC
Q 019351 232 GELPQAFARLSAVYG-GTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLP 289 (342)
Q Consensus 232 ~~l~~~l~~~~~~~G-~~i~~~~~V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~~~~ 289 (342)
..|.+.|.+.++..+ ++++.++.|+++..+ ++++ .+..++++++||.||.|.|..+
T Consensus 104 ~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~-~~~v-~v~~~~~~~~adlvIgADG~~S 160 (374)
T PRK06617 104 SDFKKILLSKITNNPLITLIDNNQYQEVISH-NDYS-IIKFDDKQIKCNLLIICDGANS 160 (374)
T ss_pred HHHHHHHHHHHhcCCCcEEECCCeEEEEEEc-CCeE-EEEEcCCEEeeCEEEEeCCCCc
Confidence 467777888777765 899999999999876 4544 3555555999999999998764
No 164
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=98.78 E-value=7.8e-08 Score=92.75 Aligned_cols=53 Identities=19% Similarity=0.240 Sum_probs=41.5
Q ss_pred hHHHHHHHHHHHc-CcEEEcCCccceEEEcCCCcEEEEEe----CC--cEEEcCEEEECCC
Q 019351 233 ELPQAFARLSAVY-GGTYMLNKPECKVEFDEEGKVVGVTS----EG--ETAKCKKVVCDPS 286 (342)
Q Consensus 233 ~l~~~l~~~~~~~-G~~i~~~~~V~~i~~~~~~~~~~v~~----~g--~~~~a~~vI~~~~ 286 (342)
.+...|.+.+.+. +++++.++.|+++..+ ++++.++.. ++ ..+.|+.||+|+|
T Consensus 134 ~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~-~g~v~Gv~~~~~~~g~~~~i~AkaVIlATG 193 (582)
T PRK09231 134 HMLHTLFQTSLKYPQIQRFDEHFVLDILVD-DGHVRGLVAMNMMEGTLVQIRANAVVMATG 193 (582)
T ss_pred HHHHHHHHHhhcCCCcEEEeCeEEEEEEEe-CCEEEEEEEEEcCCCcEEEEECCEEEECCC
Confidence 5777777777664 8999999999999876 777776543 44 3689999999886
No 165
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=98.77 E-value=2.9e-07 Score=87.00 Aligned_cols=39 Identities=28% Similarity=0.359 Sum_probs=36.5
Q ss_pred ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcC
Q 019351 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES 43 (342)
Q Consensus 5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~ 43 (342)
|||+|||+|++|+++|+.|+++|++|+++|++...||..
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~~~~ 39 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADSFLK 39 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccCCCc
Confidence 699999999999999999999999999999999888644
No 166
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=98.76 E-value=2.6e-07 Score=88.27 Aligned_cols=37 Identities=35% Similarity=0.616 Sum_probs=34.0
Q ss_pred CCCcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (342)
Q Consensus 1 m~~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~ 37 (342)
|..++|+||||+|.+|.++|.+|++.|++|+|||++.
T Consensus 4 ~~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG~ 40 (542)
T COG2303 4 MKMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAGG 40 (542)
T ss_pred ccCCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCCC
Confidence 4557999999999999999999999999999999963
No 167
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.76 E-value=9.7e-08 Score=91.10 Aligned_cols=38 Identities=24% Similarity=0.457 Sum_probs=34.3
Q ss_pred cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcC
Q 019351 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES 43 (342)
Q Consensus 4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~ 43 (342)
.+||+|||||++|++||.+|++.|++|+|+|.. +||.+
T Consensus 211 ~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~--~GG~~ 248 (517)
T PRK15317 211 PYDVLVVGGGPAGAAAAIYAARKGIRTGIVAER--FGGQV 248 (517)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC--CCCee
Confidence 589999999999999999999999999999763 77754
No 168
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=98.76 E-value=1.5e-07 Score=91.05 Aligned_cols=35 Identities=31% Similarity=0.299 Sum_probs=32.4
Q ss_pred EEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCC
Q 019351 7 VIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG 41 (342)
Q Consensus 7 ViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG 41 (342)
|+|||+|++||+||..++++|.+|+|+||.+.+++
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~~~~~ 35 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVDAPRR 35 (603)
T ss_pred CEEECccHHHHHHHHHHHHcCCCEEEEEecCCCCC
Confidence 69999999999999999999999999999986654
No 169
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=98.74 E-value=2.4e-07 Score=79.93 Aligned_cols=42 Identities=29% Similarity=0.427 Sum_probs=35.1
Q ss_pred CcccEEEECCCchHHHHHHhhhhC----CCeEEEEcCCCCCCCcCc
Q 019351 3 EEYDVIVLGTGLKECILSGLLSVD----GLKVLHMDRNDYYGGESS 44 (342)
Q Consensus 3 ~~~DViIiG~GiaGl~aA~~L~~~----G~~V~vlE~~~~~GG~~~ 44 (342)
.+.||+|||||..|+++|+.|+++ |.+|+|+|+.+.+--.+.
T Consensus 85 ~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddtytqssT 130 (509)
T KOG2853|consen 85 YHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTYTQSST 130 (509)
T ss_pred cccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcccccce
Confidence 358999999999999999999864 799999999886644333
No 170
>PRK06475 salicylate hydroxylase; Provisional
Probab=98.74 E-value=1.6e-07 Score=86.81 Aligned_cols=57 Identities=11% Similarity=0.024 Sum_probs=41.0
Q ss_pred ChHHHHHHHHHHH-cCcEEEcCCccceEEEcCCCcEEEEEe--C-CcEEEcCEEEECCCCCC
Q 019351 232 GELPQAFARLSAV-YGGTYMLNKPECKVEFDEEGKVVGVTS--E-GETAKCKKVVCDPSYLP 289 (342)
Q Consensus 232 ~~l~~~l~~~~~~-~G~~i~~~~~V~~i~~~~~~~~~~v~~--~-g~~~~a~~vI~~~~~~~ 289 (342)
..|.+.|.+.+.. .|++++++++|+++..+ ++++..... + ++++.||.||.|.|..+
T Consensus 107 ~~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~-~~~v~v~~~~~~~~~~~~adlvIgADG~~S 167 (400)
T PRK06475 107 ADLQSALLDACRNNPGIEIKLGAEMTSQRQT-GNSITATIIRTNSVETVSAAYLIACDGVWS 167 (400)
T ss_pred HHHHHHHHHHHHhcCCcEEEECCEEEEEecC-CCceEEEEEeCCCCcEEecCEEEECCCccH
Confidence 3566677776655 47999999999999876 555433221 3 35799999999998764
No 171
>PRK09077 L-aspartate oxidase; Provisional
Probab=98.74 E-value=1.3e-07 Score=90.53 Aligned_cols=40 Identities=20% Similarity=0.347 Sum_probs=36.0
Q ss_pred CcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcC
Q 019351 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES 43 (342)
Q Consensus 3 ~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~ 43 (342)
.++||+|||+|++||+||+.+++. .+|+|+||....||.+
T Consensus 7 ~~~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~~~~g~t 46 (536)
T PRK09077 7 HQCDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPLSEGST 46 (536)
T ss_pred ccCCEEEECchHHHHHHHHHHHHC-CCEEEEeccCCCCCCh
Confidence 358999999999999999999987 8999999998887754
No 172
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=98.73 E-value=8.1e-08 Score=76.49 Aligned_cols=43 Identities=19% Similarity=0.182 Sum_probs=31.9
Q ss_pred HcCcEEE-cCCccceEEEcCCCcEEEEEeCCcEEEcCEEEECCCC
Q 019351 244 VYGGTYM-LNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSY 287 (342)
Q Consensus 244 ~~G~~i~-~~~~V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~~ 287 (342)
..|++|. .+.+|+.|... +++...++.+|..+.||+||+|+|.
T Consensus 112 ~~~i~v~~~~~~V~~i~~~-~~~~~v~~~~g~~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 112 PAGITVRHVRAEVVDIRRD-DDGYRVVTADGQSIRADAVVLATGH 155 (156)
T ss_pred cCCcEEEEEeeEEEEEEEc-CCcEEEEECCCCEEEeCEEEECCCC
Confidence 3355543 56789999987 5555555568899999999999985
No 173
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=98.73 E-value=1.4e-06 Score=79.83 Aligned_cols=34 Identities=35% Similarity=0.449 Sum_probs=32.0
Q ss_pred cEEEECCCchHHHHHHhh--hhCCCeEEEEcCCCCC
Q 019351 6 DVIVLGTGLKECILSGLL--SVDGLKVLHMDRNDYY 39 (342)
Q Consensus 6 DViIiG~GiaGl~aA~~L--~~~G~~V~vlE~~~~~ 39 (342)
||||||||+|||++|++| ++.|.+|+|+|++...
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~ 36 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKP 36 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccc
Confidence 899999999999999999 8889999999998766
No 174
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=98.73 E-value=2.9e-07 Score=80.68 Aligned_cols=34 Identities=32% Similarity=0.534 Sum_probs=32.2
Q ss_pred CcccEEEECCCchHHHHHHhhhhCCCeEEEEcCC
Q 019351 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRN 36 (342)
Q Consensus 3 ~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~ 36 (342)
..+||||||||++|.+.|+.|++.|.+|+|+||.
T Consensus 44 ~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERD 77 (509)
T KOG1298|consen 44 GAADVIIVGAGVAGSALAYALAKDGRRVHVIERD 77 (509)
T ss_pred CcccEEEECCcchHHHHHHHHhhCCcEEEEEecc
Confidence 3589999999999999999999999999999994
No 175
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.73 E-value=3.1e-08 Score=89.06 Aligned_cols=52 Identities=21% Similarity=0.246 Sum_probs=39.5
Q ss_pred HHHHHHHHHHH-cCcEEEcCCccceEEEcCCCcEEEEEe-CCcEEEcCEEEECCCC
Q 019351 234 LPQAFARLSAV-YGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSY 287 (342)
Q Consensus 234 l~~~l~~~~~~-~G~~i~~~~~V~~i~~~~~~~~~~v~~-~g~~~~a~~vI~~~~~ 287 (342)
+...+.+.++. .+++|+ ..+|++|..+ ++++.+|.+ +|..+.||.||+|+|.
T Consensus 97 y~~~~~~~l~~~~nl~i~-~~~V~~l~~e-~~~v~GV~~~~g~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 97 YSRAMREKLESHPNLTII-QGEVTDLIVE-NGKVKGVVTKDGEEIEADAVVLATGT 150 (392)
T ss_dssp HHHHHHHHHHTSTTEEEE-ES-EEEEEEC-TTEEEEEEETTSEEEEECEEEE-TTT
T ss_pred HHHHHHHHHhcCCCeEEE-EcccceEEec-CCeEEEEEeCCCCEEecCEEEEeccc
Confidence 34445555555 367775 6789999888 899999998 7889999999999987
No 176
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=98.73 E-value=1.7e-07 Score=90.21 Aligned_cols=54 Identities=20% Similarity=0.178 Sum_probs=42.9
Q ss_pred ChHHHHHHHHHHHc-CcEEEcCCccceEEEcCCCcEEEEEe----CC--cEEEcCEEEECCC
Q 019351 232 GELPQAFARLSAVY-GGTYMLNKPECKVEFDEEGKVVGVTS----EG--ETAKCKKVVCDPS 286 (342)
Q Consensus 232 ~~l~~~l~~~~~~~-G~~i~~~~~V~~i~~~~~~~~~~v~~----~g--~~~~a~~vI~~~~ 286 (342)
..+...|.+.+.+. |++++.++.|+++..+ ++++.++.. +| ..+.|+.||+|+|
T Consensus 132 ~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~-~g~v~Gv~~~~~~~g~~~~i~AkaVILATG 192 (580)
T TIGR01176 132 FHMLHTLFQTSLTYPQIMRYDEWFVTDLLVD-DGRVCGLVAIEMAEGRLVTILADAVVLATG 192 (580)
T ss_pred HHHHHHHHHHHHhcCCCEEEeCeEEEEEEee-CCEEEEEEEEEcCCCcEEEEecCEEEEcCC
Confidence 46788888877664 8999999999999877 778887653 44 3588999999876
No 177
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=98.70 E-value=3.4e-07 Score=84.31 Aligned_cols=55 Identities=22% Similarity=0.300 Sum_probs=44.9
Q ss_pred hHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CC--cEEEcCEEEECCCCC
Q 019351 233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EG--ETAKCKKVVCDPSYL 288 (342)
Q Consensus 233 ~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~-~g--~~~~a~~vI~~~~~~ 288 (342)
++.+.|.+.+++.|++++.+++|++++.+ ++++..+.+ ++ ..+.||.||+|+|-.
T Consensus 260 rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~-~~~V~~v~~~~g~~~~i~AD~VVLAtGrf 317 (422)
T PRK05329 260 RLQNALRRAFERLGGRIMPGDEVLGAEFE-GGRVTAVWTRNHGDIPLRARHFVLATGSF 317 (422)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEEe-CCEEEEEEeeCCceEEEECCEEEEeCCCc
Confidence 78889999999999999999999999876 566665554 44 358999999998754
No 178
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=98.69 E-value=1.4e-07 Score=88.21 Aligned_cols=56 Identities=20% Similarity=0.280 Sum_probs=43.3
Q ss_pred ChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCcEEEcCEEEECCCCC
Q 019351 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYL 288 (342)
Q Consensus 232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~-~g~~~~a~~vI~~~~~~ 288 (342)
..+-+-|.+.|++.|++++.++ |+.+..++++.+..|++ +|++++||.||=|+|..
T Consensus 154 ~~fd~~L~~~A~~~Gv~~~~g~-V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~ 210 (454)
T PF04820_consen 154 AKFDQFLRRHAEERGVEVIEGT-VVDVELDEDGRITAVRLDDGRTIEADFFIDASGRR 210 (454)
T ss_dssp HHHHHHHHHHHHHTT-EEEET--EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG
T ss_pred HHHHHHHHHHHhcCCCEEEeCE-EEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCcc
Confidence 4677788899999999999885 77777765777778887 78889999999998864
No 179
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.68 E-value=3.8e-07 Score=78.12 Aligned_cols=39 Identities=28% Similarity=0.382 Sum_probs=36.8
Q ss_pred cEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCc
Q 019351 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS 44 (342)
Q Consensus 6 DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~ 44 (342)
-|+|||+|++||+|+..+...|-.|+++|++..+||.+.
T Consensus 11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GGNSi 49 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGGNSI 49 (477)
T ss_pred cEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcCCcce
Confidence 499999999999999999999988999999999999875
No 180
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=98.68 E-value=2e-08 Score=93.91 Aligned_cols=43 Identities=23% Similarity=0.327 Sum_probs=40.0
Q ss_pred CcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCcc
Q 019351 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS 45 (342)
Q Consensus 3 ~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t 45 (342)
...+|+|||||++||+||.+|.+.|++|+|||+++.+||.+..
T Consensus 9 ~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~ 51 (461)
T PLN02172 9 NSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVY 51 (461)
T ss_pred CCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeec
Confidence 3579999999999999999999999999999999999998753
No 181
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.67 E-value=1.9e-07 Score=88.97 Aligned_cols=38 Identities=26% Similarity=0.434 Sum_probs=34.2
Q ss_pred cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcC
Q 019351 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES 43 (342)
Q Consensus 4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~ 43 (342)
.+||+|||||.+|++||.+|++.|++|+|+|. ++||.+
T Consensus 212 ~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~--~~GG~~ 249 (515)
T TIGR03140 212 PYDVLVVGGGPAGAAAAIYAARKGLRTAMVAE--RIGGQV 249 (515)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEec--CCCCcc
Confidence 48999999999999999999999999999975 477754
No 182
>PRK06116 glutathione reductase; Validated
Probab=98.67 E-value=1.8e-08 Score=94.54 Aligned_cols=43 Identities=28% Similarity=0.462 Sum_probs=39.8
Q ss_pred CCCcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCc
Q 019351 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS 44 (342)
Q Consensus 1 m~~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~ 44 (342)
|+.+|||+|||||.+|++||..|+++|++|+|+|+. .+||.|.
T Consensus 1 m~~~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~-~~GG~c~ 43 (450)
T PRK06116 1 MTKDYDLIVIGGGSGGIASANRAAMYGAKVALIEAK-RLGGTCV 43 (450)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc-chhhhhh
Confidence 777899999999999999999999999999999996 7899764
No 183
>PRK06996 hypothetical protein; Provisional
Probab=98.66 E-value=2.3e-07 Score=85.72 Aligned_cols=54 Identities=17% Similarity=0.099 Sum_probs=41.5
Q ss_pred ChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CC---cEEEcCEEEECCCC
Q 019351 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EG---ETAKCKKVVCDPSY 287 (342)
Q Consensus 232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~-~g---~~~~a~~vI~~~~~ 287 (342)
..+.+.|.+.++..|++++.+++|++++.+ ++.+. ++. ++ .+++||.||.|.|-
T Consensus 115 ~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~-~~~v~-v~~~~~~g~~~i~a~lvIgADG~ 172 (398)
T PRK06996 115 GSLVAALARAVRGTPVRWLTSTTAHAPAQD-ADGVT-LALGTPQGARTLRARIAVQAEGG 172 (398)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCeeeeeeec-CCeEE-EEECCCCcceEEeeeEEEECCCC
Confidence 456778888888889999999999999776 44443 443 32 48999999999874
No 184
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.65 E-value=2.6e-08 Score=93.85 Aligned_cols=44 Identities=25% Similarity=0.302 Sum_probs=41.3
Q ss_pred CCCcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCc
Q 019351 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS 44 (342)
Q Consensus 1 m~~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~ 44 (342)
|+.+|||+|||||.+|+.||.+|++.|++|+|+|+++.+||.|.
T Consensus 1 ~~~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c~ 44 (471)
T PRK06467 1 MEIKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCL 44 (471)
T ss_pred CCccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCccccccc
Confidence 77789999999999999999999999999999999889999774
No 185
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.65 E-value=2.7e-08 Score=93.80 Aligned_cols=58 Identities=21% Similarity=0.118 Sum_probs=45.7
Q ss_pred ChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCcEEEcCEEEECCCCCCc
Q 019351 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPN 290 (342)
Q Consensus 232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~~~~~ 290 (342)
..+...+.+.+++.|++++++++|++++.+ ++.+.....+++++.+|.||+|+|..|+
T Consensus 216 ~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~-~~~~~v~~~~g~~i~~D~vi~a~G~~p~ 273 (461)
T PRK05249 216 DEISDALSYHLRDSGVTIRHNEEVEKVEGG-DDGVIVHLKSGKKIKADCLLYANGRTGN 273 (461)
T ss_pred HHHHHHHHHHHHHcCCEEEECCEEEEEEEe-CCeEEEEECCCCEEEeCEEEEeecCCcc
Confidence 356778888888899999999999999865 4443333336778999999999998764
No 186
>COG4716 Myosin-crossreactive antigen [Function unknown]
Probab=98.62 E-value=2.8e-07 Score=80.46 Aligned_cols=95 Identities=13% Similarity=0.177 Sum_probs=59.4
Q ss_pred CCCCcHHHHHHHcCCChhHHHHHHhhhhcccCCCCCCCchHHHHHHHHHHHHhhccccCCCceEEeCC-CCChHHHHHHH
Q 019351 162 LTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLY-GLGELPQAFAR 240 (342)
Q Consensus 162 ~~~~s~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g-G~~~l~~~l~~ 240 (342)
+++.++.||+....+..++.-++..+.+. .. ..++...-..+.++.+..+..+.-+...+.++ -+..++..|..
T Consensus 161 L~~~tI~d~Fse~FF~sNFW~yW~tmFAF---ek--WhSa~EmRRY~mRfihhi~gl~dfs~lkftkyNQYeSlvlPli~ 235 (587)
T COG4716 161 LDDLTIEDWFSEDFFKSNFWYYWQTMFAF---EK--WHSAFEMRRYMMRFIHHISGLPDFSALKFTKYNQYESLVLPLIT 235 (587)
T ss_pred cCCccHHHhhhHhhhhhhHHHHHHHHHhh---hH--HHHHHHHHHHHHHHHHHhcCCCcchhhcccccchHHHHHHHHHH
Confidence 47899999987765766665444333321 11 12233333333344443333322233334444 48899999999
Q ss_pred HHHHcCcEEEcCCccceEEEc
Q 019351 241 LSAVYGGTYMLNKPECKVEFD 261 (342)
Q Consensus 241 ~~~~~G~~i~~~~~V~~i~~~ 261 (342)
.++.+|+++..++.|..|+.+
T Consensus 236 yL~~H~Vdf~~~~~Vedi~v~ 256 (587)
T COG4716 236 YLKSHGVDFTYDQKVEDIDVD 256 (587)
T ss_pred HHHHcCCceEeccEEeeeeec
Confidence 999999999999999999875
No 187
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=98.62 E-value=1.1e-06 Score=79.24 Aligned_cols=65 Identities=15% Similarity=0.186 Sum_probs=55.2
Q ss_pred EeCCC---CChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCcEEEcCEEEECCCCCCcc
Q 019351 226 YPLYG---LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNK 291 (342)
Q Consensus 226 ~~~gG---~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~~~~~~ 291 (342)
++.+| ...++..|++.++++|++++.+++|++|..+ +++++.|.+++++++||+||+|+|++...
T Consensus 128 ~~~~g~v~p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~-~~~~~~v~~~~g~~~a~~vV~a~G~~~~~ 195 (337)
T TIGR02352 128 YPDDAHVDPRALLKALEKALEKLGVEIIEHTEVQHIEIR-GEKVTAIVTPSGDVQADQVVLAAGAWAGE 195 (337)
T ss_pred cCCCceEChHHHHHHHHHHHHHcCCEEEccceEEEEEee-CCEEEEEEcCCCEEECCEEEEcCChhhhh
Confidence 44444 5789999999999999999999999999886 67777888877799999999999988543
No 188
>PRK06370 mercuric reductase; Validated
Probab=98.61 E-value=3.8e-08 Score=92.73 Aligned_cols=43 Identities=30% Similarity=0.458 Sum_probs=38.5
Q ss_pred CCCcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCc
Q 019351 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS 44 (342)
Q Consensus 1 m~~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~ 44 (342)
|+.+|||+|||||++|++||.+|++.|++|+|+|+. .+||.|.
T Consensus 2 ~~~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~ 44 (463)
T PRK06370 2 PAQRYDAIVIGAGQAGPPLAARAAGLGMKVALIERG-LLGGTCV 44 (463)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhCCCeEEEEecC-ccCCcee
Confidence 667899999999999999999999999999999996 5666654
No 189
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.61 E-value=4e-08 Score=92.77 Aligned_cols=44 Identities=25% Similarity=0.428 Sum_probs=40.6
Q ss_pred CCCcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCcc
Q 019351 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS 45 (342)
Q Consensus 1 m~~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t 45 (342)
|...|||+|||||.+|+.||.+|++.|++|+|+|+. .+||.|..
T Consensus 1 ~~~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~ 44 (472)
T PRK05976 1 MAKEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG-KLGGTCLH 44 (472)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCcceEc
Confidence 777899999999999999999999999999999996 78998854
No 190
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=98.60 E-value=3.9e-08 Score=91.55 Aligned_cols=49 Identities=18% Similarity=0.236 Sum_probs=43.8
Q ss_pred CCcccEEEECCCchHHHHHHhhhhCCCe-EEEEcCCCCCCCcCcccchHH
Q 019351 2 DEEYDVIVLGTGLKECILSGLLSVDGLK-VLHMDRNDYYGGESSSLNLIQ 50 (342)
Q Consensus 2 ~~~~DViIiG~GiaGl~aA~~L~~~G~~-V~vlE~~~~~GG~~~t~~~~~ 50 (342)
.+++||+|||||.+||++|++|.++|.. ++||||++.+||.++...+.+
T Consensus 6 ~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~ry~~ 55 (443)
T COG2072 6 ATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPG 55 (443)
T ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhccCCc
Confidence 4568999999999999999999999988 999999999999987765543
No 191
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.60 E-value=3.8e-08 Score=92.68 Aligned_cols=43 Identities=28% Similarity=0.378 Sum_probs=39.8
Q ss_pred CCCcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCc
Q 019351 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS 44 (342)
Q Consensus 1 m~~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~ 44 (342)
|+ +|||+|||||.+|++||.+|+++|++|+|+|+++.+||.|.
T Consensus 1 m~-~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c~ 43 (466)
T PRK06115 1 MA-SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCL 43 (466)
T ss_pred CC-cccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeeec
Confidence 65 49999999999999999999999999999999888999874
No 192
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.59 E-value=4.4e-08 Score=91.77 Aligned_cols=57 Identities=18% Similarity=0.222 Sum_probs=45.3
Q ss_pred ChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCcEEEcCEEEECCCCCCc
Q 019351 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPN 290 (342)
Q Consensus 232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~~~~~ 290 (342)
..+...+.+.+++.|+++++++.|++|+.+ ++. ..+.++++++.+|.||+|+|..|+
T Consensus 199 ~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~-~~~-v~v~~~~g~i~~D~vl~a~G~~pn 255 (441)
T PRK08010 199 RDIADNIATILRDQGVDIILNAHVERISHH-ENQ-VQVHSEHAQLAVDALLIASGRQPA 255 (441)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEc-CCE-EEEEEcCCeEEeCEEEEeecCCcC
Confidence 356677888888999999999999999875 444 345555567999999999998874
No 193
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=98.59 E-value=6e-07 Score=85.19 Aligned_cols=39 Identities=31% Similarity=0.345 Sum_probs=34.6
Q ss_pred ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcC
Q 019351 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES 43 (342)
Q Consensus 5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~ 43 (342)
|||+|||||++|+.||+.+++.|.+|+|+|++...+|.+
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~ 39 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGKC 39 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCEEEEecccccccCC
Confidence 699999999999999999999999999999975544443
No 194
>PRK09897 hypothetical protein; Provisional
Probab=98.57 E-value=9.6e-07 Score=83.63 Aligned_cols=40 Identities=18% Similarity=0.180 Sum_probs=34.6
Q ss_pred ccEEEECCCchHHHHHHhhhhCC--CeEEEEcCCCCCC-CcCc
Q 019351 5 YDVIVLGTGLKECILSGLLSVDG--LKVLHMDRNDYYG-GESS 44 (342)
Q Consensus 5 ~DViIiG~GiaGl~aA~~L~~~G--~~V~vlE~~~~~G-G~~~ 44 (342)
.+|+|||||.+|+++|.+|.+.+ .+|+|+|++..+| |...
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ay 44 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPY 44 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceee
Confidence 47999999999999999998865 5899999998888 5543
No 195
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=98.57 E-value=2.3e-06 Score=73.67 Aligned_cols=53 Identities=17% Similarity=0.221 Sum_probs=44.0
Q ss_pred hHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCc--EEEcCEEEECCC
Q 019351 233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGE--TAKCKKVVCDPS 286 (342)
Q Consensus 233 ~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~-~g~--~~~a~~vI~~~~ 286 (342)
++-+.|.+..++.|+.+..+.+|.+.+.. ++++..|.+ ++. .++||..|+|+|
T Consensus 259 Rl~~~L~~~f~~~Gg~~m~Gd~V~~a~~~-~~~v~~i~trn~~diP~~a~~~VLAsG 314 (421)
T COG3075 259 RLHNQLQRQFEQLGGLWMPGDEVKKATCK-GGRVTEIYTRNHADIPLRADFYVLASG 314 (421)
T ss_pred hHHHHHHHHHHHcCceEecCCceeeeeee-CCeEEEEEecccccCCCChhHeeeecc
Confidence 45678888889999999999999999988 888888887 443 478998887765
No 196
>PLN02785 Protein HOTHEAD
Probab=98.57 E-value=1.8e-06 Score=83.10 Aligned_cols=34 Identities=38% Similarity=0.644 Sum_probs=31.7
Q ss_pred cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCC
Q 019351 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY 38 (342)
Q Consensus 4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~ 38 (342)
.||+||||||.+|+++|.+|++ +.+|+|||++..
T Consensus 55 ~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~~ 88 (587)
T PLN02785 55 AYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGGV 88 (587)
T ss_pred cCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCCC
Confidence 5999999999999999999999 699999999764
No 197
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.56 E-value=6.8e-08 Score=91.11 Aligned_cols=44 Identities=32% Similarity=0.518 Sum_probs=39.2
Q ss_pred CCCcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCcc
Q 019351 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS 45 (342)
Q Consensus 1 m~~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t 45 (342)
|+++|||+|||||.+|++||.+|++.|++|+|+|++ .+||.|..
T Consensus 1 ~~~~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~-~~GG~c~~ 44 (466)
T PRK07818 1 MMTHYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKK-YWGGVCLN 44 (466)
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCceec
Confidence 666799999999999999999999999999999985 67777653
No 198
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.55 E-value=6.6e-08 Score=90.49 Aligned_cols=56 Identities=23% Similarity=0.265 Sum_probs=43.5
Q ss_pred hHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCcEEEcCEEEECCCCCCc
Q 019351 233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPN 290 (342)
Q Consensus 233 ~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~~~~~ 290 (342)
.+...+.+.+++.|++++++++|++|+.+ ++. ..++.+++++.+|.||+|+|..|+
T Consensus 199 ~~~~~~~~~l~~~GI~i~~~~~V~~i~~~-~~~-v~v~~~g~~i~~D~viva~G~~p~ 254 (438)
T PRK07251 199 SVAALAKQYMEEDGITFLLNAHTTEVKND-GDQ-VLVVTEDETYRFDALLYATGRKPN 254 (438)
T ss_pred HHHHHHHHHHHHcCCEEEcCCEEEEEEec-CCE-EEEEECCeEEEcCEEEEeeCCCCC
Confidence 44555666777889999999999999865 443 345557788999999999988764
No 199
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.55 E-value=6.1e-08 Score=90.23 Aligned_cols=40 Identities=30% Similarity=0.498 Sum_probs=34.0
Q ss_pred cEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCcc
Q 019351 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS 45 (342)
Q Consensus 6 DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t 45 (342)
||||||||++|++||+.++++|.+|+|+|+.+.+||...+
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~ 40 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATS 40 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGG
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceE
Confidence 8999999999999999999999999999999999997654
No 200
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.55 E-value=6.8e-08 Score=92.84 Aligned_cols=43 Identities=26% Similarity=0.475 Sum_probs=39.5
Q ss_pred CCCcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCc
Q 019351 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS 44 (342)
Q Consensus 1 m~~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~ 44 (342)
|.+.|||+|||||.+||+||.+|+++|++|+|+|++ .+||.+.
T Consensus 1 m~~~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~-~~GG~~~ 43 (555)
T TIGR03143 1 MEEIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKD-DFGGQIT 43 (555)
T ss_pred CCCcCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC-CCCceEE
Confidence 777899999999999999999999999999999996 6888764
No 201
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.53 E-value=9.1e-08 Score=90.41 Aligned_cols=46 Identities=26% Similarity=0.443 Sum_probs=41.3
Q ss_pred CCCcccEEEECCCchHHHHHHhhhhCCCeEEEEcC------CCCCCCcCccc
Q 019351 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDR------NDYYGGESSSL 46 (342)
Q Consensus 1 m~~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~------~~~~GG~~~t~ 46 (342)
|+.+||++|||||.+|++||.+|++.|.+|+|+|+ ...+||.|...
T Consensus 1 ~~~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~~~~~~g~~~~Gg~c~n~ 52 (475)
T PRK06327 1 MSKQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNPKGKPALGGTCLNV 52 (475)
T ss_pred CCcceeEEEECCCHHHHHHHHHHHhCCCeEEEEecccCCCCCCCcCCccccc
Confidence 77789999999999999999999999999999998 46788887544
No 202
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.52 E-value=9.1e-08 Score=87.99 Aligned_cols=54 Identities=19% Similarity=0.070 Sum_probs=40.6
Q ss_pred HHHHHHHHHHH-cCcEEEcCCccceEEEcCCCcEEEEEe-CCcEEEcCEEEECCCCCC
Q 019351 234 LPQAFARLSAV-YGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLP 289 (342)
Q Consensus 234 l~~~l~~~~~~-~G~~i~~~~~V~~i~~~~~~~~~~v~~-~g~~~~a~~vI~~~~~~~ 289 (342)
+-..|.+.++. .|++++.+++|++++.+ ++.+. ++. +|.+++||.||.|.|..+
T Consensus 112 l~~~L~~~~~~~~~i~i~~~~~v~~~~~~-~~~~~-v~~~~g~~~~~~lvIgADG~~S 167 (384)
T PRK08849 112 IQLGLWQQFAQYPNLTLMCPEKLADLEFS-AEGNR-VTLESGAEIEAKWVIGADGANS 167 (384)
T ss_pred HHHHHHHHHHhCCCeEEECCCceeEEEEc-CCeEE-EEECCCCEEEeeEEEEecCCCc
Confidence 44455555444 47999999999999887 45444 444 778999999999999875
No 203
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.52 E-value=8.5e-08 Score=89.89 Aligned_cols=56 Identities=18% Similarity=0.143 Sum_probs=43.6
Q ss_pred hHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCcEEEcCEEEECCCCCCc
Q 019351 233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLPN 290 (342)
Q Consensus 233 ~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~-~g~~~~a~~vI~~~~~~~~ 290 (342)
.+...+.+.+++.|+++++++.|++|..+ ++.. .+++ ++.++.+|.||+|+|..|+
T Consensus 208 ~~~~~l~~~l~~~gV~i~~~~~v~~i~~~-~~~~-~v~~~~g~~i~~D~viva~G~~pn 264 (446)
T TIGR01424 208 DMRALLARNMEGRGIRIHPQTSLTSITKT-DDGL-KVTLSHGEEIVADVVLFATGRSPN 264 (446)
T ss_pred HHHHHHHHHHHHCCCEEEeCCEEEEEEEc-CCeE-EEEEcCCcEeecCEEEEeeCCCcC
Confidence 45556777778889999999999999865 3433 3444 6778999999999998764
No 204
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.51 E-value=1e-07 Score=89.88 Aligned_cols=57 Identities=26% Similarity=0.301 Sum_probs=44.5
Q ss_pred ChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CC--cEEEcCEEEECCCCCCc
Q 019351 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EG--ETAKCKKVVCDPSYLPN 290 (342)
Q Consensus 232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~-~g--~~~~a~~vI~~~~~~~~ 290 (342)
..+...+.+.+++.|+++++++.|++|+.+ ++++. +.+ +| .++.+|.||+|+|..|+
T Consensus 211 ~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~-~~~v~-v~~~~g~~~~i~~D~vi~a~G~~p~ 270 (461)
T TIGR01350 211 AEVSKVVAKALKKKGVKILTNTKVTAVEKN-DDQVV-YENKGGETETLTGEKVLVAVGRKPN 270 (461)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEEEEEEEe-CCEEE-EEEeCCcEEEEEeCEEEEecCCccc
Confidence 356667778888899999999999999876 45544 443 55 47999999999998764
No 205
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.50 E-value=1e-07 Score=89.32 Aligned_cols=41 Identities=24% Similarity=0.390 Sum_probs=37.4
Q ss_pred CcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCc
Q 019351 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS 44 (342)
Q Consensus 3 ~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~ 44 (342)
++|||+|||||.+|+.||..|++.|++|+|+|+. .+||.|.
T Consensus 1 ~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~-~~GG~c~ 41 (450)
T TIGR01421 1 KHYDYLVIGGGSGGIASARRAAEHGAKALLVEAK-KLGGTCV 41 (450)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEeccc-cccccee
Confidence 3699999999999999999999999999999995 6898764
No 206
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=98.49 E-value=1.1e-06 Score=80.86 Aligned_cols=64 Identities=19% Similarity=0.167 Sum_probs=50.8
Q ss_pred EEeCCC---CChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCcEEEcCEEEECCCCCCcc
Q 019351 225 IYPLYG---LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLPNK 291 (342)
Q Consensus 225 ~~~~gG---~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~-~g~~~~a~~vI~~~~~~~~~ 291 (342)
+++.+| ...++.+|.+++++ |++++++++|++|+.+ +++ +.|++ +|..++||+||+|+|.|...
T Consensus 125 ~~~~~g~idp~~~~~~l~~~~~~-G~~i~~~~~V~~i~~~-~~~-~~v~t~~g~~~~a~~vV~a~G~~~~~ 192 (381)
T TIGR03197 125 FFPQGGWLSPPQLCRALLAHAGI-RLTLHFNTEITSLERD-GEG-WQLLDANGEVIAASVVVLANGAQAGQ 192 (381)
T ss_pred EeCCCcccChHHHHHHHHhccCC-CcEEEeCCEEEEEEEc-CCe-EEEEeCCCCEEEcCEEEEcCCccccc
Confidence 344445 46889999999998 9999999999999876 555 55666 55569999999999988543
No 207
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.48 E-value=1.3e-07 Score=89.23 Aligned_cols=42 Identities=33% Similarity=0.476 Sum_probs=38.6
Q ss_pred CcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCcc
Q 019351 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS 45 (342)
Q Consensus 3 ~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t 45 (342)
.+|||+|||||.+|+.||..|+++|++|+|+|+.. +||.|..
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~~ 44 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK-LGGTCLN 44 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc-cccceee
Confidence 46999999999999999999999999999999987 8997643
No 208
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=98.48 E-value=1.4e-07 Score=88.95 Aligned_cols=42 Identities=31% Similarity=0.494 Sum_probs=38.4
Q ss_pred CCCcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCc
Q 019351 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS 44 (342)
Q Consensus 1 m~~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~ 44 (342)
|. +|||+|||||.+|++||.+|++.|++|+|+|+ +.+||.+.
T Consensus 1 m~-~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~GG~~~ 42 (460)
T PRK06292 1 ME-KYDVIVIGAGPAGYVAARRAAKLGKKVALIEK-GPLGGTCL 42 (460)
T ss_pred CC-cccEEEECCCHHHHHHHHHHHHCCCeEEEEeC-Ccccccee
Confidence 54 49999999999999999999999999999999 68899765
No 209
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=98.48 E-value=1.2e-07 Score=85.44 Aligned_cols=43 Identities=28% Similarity=0.410 Sum_probs=39.8
Q ss_pred ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCcccc
Q 019351 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLN 47 (342)
Q Consensus 5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t~~ 47 (342)
-+++|||||++|++||..|++.|++|.++||++.+||++..++
T Consensus 125 ~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGrmak~~ 167 (622)
T COG1148 125 KSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRMAKLN 167 (622)
T ss_pred cceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccccHHhhh
Confidence 3699999999999999999999999999999999999987543
No 210
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=98.47 E-value=1.4e-07 Score=86.85 Aligned_cols=32 Identities=28% Similarity=0.546 Sum_probs=31.3
Q ss_pred ccEEEECCCchHHHHHHhhhhCCCeEEEEcCC
Q 019351 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRN 36 (342)
Q Consensus 5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~ 36 (342)
|||+|||||++|++||+.|+++|++|+|+|++
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~ 32 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLERA 32 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 79999999999999999999999999999997
No 211
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=98.46 E-value=8.9e-06 Score=68.88 Aligned_cols=41 Identities=17% Similarity=0.354 Sum_probs=37.3
Q ss_pred cccEEEECCCchHHHHHHhhhhCC------CeEEEEcCCCCCCCcCc
Q 019351 4 EYDVIVLGTGLKECILSGLLSVDG------LKVLHMDRNDYYGGESS 44 (342)
Q Consensus 4 ~~DViIiG~GiaGl~aA~~L~~~G------~~V~vlE~~~~~GG~~~ 44 (342)
..+|+|||||+.|.++||+|++.+ ..|+++|+....||.+.
T Consensus 10 sk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~gaSG 56 (380)
T KOG2852|consen 10 SKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGGASG 56 (380)
T ss_pred ceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeeccccccccc
Confidence 468999999999999999999987 78999999999888764
No 212
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=98.46 E-value=8.9e-07 Score=75.71 Aligned_cols=61 Identities=20% Similarity=0.254 Sum_probs=45.3
Q ss_pred CChHHHHHHHHHHHcCcEEEcCCccceEEEcCCC--cE-EEEE-eCCcEEEcCEEEECCCCCCcc
Q 019351 231 LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEG--KV-VGVT-SEGETAKCKKVVCDPSYLPNK 291 (342)
Q Consensus 231 ~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~--~~-~~v~-~~g~~~~a~~vI~~~~~~~~~ 291 (342)
.+.++..+.+..+..|.++.+|-++..+..+.+. .. +.|. ..+++++++.||.|++...+.
T Consensus 195 ~~~v~ls~~edF~~~gg~i~~n~~l~g~~~n~~~~~~Ypivv~ngk~ee~r~~~~vtc~gl~sdr 259 (453)
T KOG2665|consen 195 WGSVTLSFGEDFDFMGGRIYTNFRLQGIAQNKEATFSYPIVVLNGKGEEKRTKNVVTCAGLQSDR 259 (453)
T ss_pred hHHHHHHHHHHHHHhcccccccceeccchhccCCCCCCceEEecCccceeEEeEEEEeccccHhH
Confidence 4667778888888899999999999999875222 11 2222 256789999999999987543
No 213
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=98.45 E-value=1.6e-07 Score=87.74 Aligned_cols=34 Identities=21% Similarity=0.358 Sum_probs=32.5
Q ss_pred cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (342)
Q Consensus 4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~ 37 (342)
++||+|||||++|++||+.|+++|++|+|+|++.
T Consensus 39 ~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~ 72 (450)
T PLN00093 39 KLRVAVIGGGPAGACAAETLAKGGIETFLIERKL 72 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 5899999999999999999999999999999974
No 214
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.44 E-value=1.7e-07 Score=86.44 Aligned_cols=43 Identities=28% Similarity=0.328 Sum_probs=40.1
Q ss_pred cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCccc
Q 019351 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSL 46 (342)
Q Consensus 4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t~ 46 (342)
..+|+|||||.|||++|..|.+.|++|+||||.+.+||.+...
T Consensus 6 ~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~ 48 (448)
T KOG1399|consen 6 SKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYT 48 (448)
T ss_pred CCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeec
Confidence 4699999999999999999999999999999999999988644
No 215
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=98.43 E-value=1.3e-05 Score=72.18 Aligned_cols=58 Identities=22% Similarity=0.347 Sum_probs=48.5
Q ss_pred CChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCcEEEcCEEEECCCCCC
Q 019351 231 LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLP 289 (342)
Q Consensus 231 ~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~-~g~~~~a~~vI~~~~~~~ 289 (342)
...++..+.+.++.+|++|+++|+|..|+.. ++.+..|.+ +|.++.||+||+|+|-..
T Consensus 172 l~~vvkni~~~l~~~G~ei~f~t~VeDi~~~-~~~~~~v~~~~g~~i~~~~vvlA~Grsg 230 (486)
T COG2509 172 LPKVVKNIREYLESLGGEIRFNTEVEDIEIE-DNEVLGVKLTKGEEIEADYVVLAPGRSG 230 (486)
T ss_pred hHHHHHHHHHHHHhcCcEEEeeeEEEEEEec-CCceEEEEccCCcEEecCEEEEccCcch
Confidence 3466778899999999999999999999987 555666666 677999999999998653
No 216
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=98.42 E-value=2.4e-07 Score=85.52 Aligned_cols=38 Identities=18% Similarity=0.286 Sum_probs=34.1
Q ss_pred ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCc
Q 019351 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGE 42 (342)
Q Consensus 5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~ 42 (342)
+||+|||||++|++||+.|+++|++|+|+|++...+..
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~~~ 38 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDNAKP 38 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCCCC
Confidence 58999999999999999999999999999998655433
No 217
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=98.42 E-value=2.3e-07 Score=82.20 Aligned_cols=39 Identities=28% Similarity=0.448 Sum_probs=35.7
Q ss_pred ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCc
Q 019351 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS 44 (342)
Q Consensus 5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~ 44 (342)
|||+|||||++||+||..|++.|++|+|+|+++ +||...
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~gg~~~ 39 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGME-PGGQLT 39 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccC-CCccee
Confidence 699999999999999999999999999999987 677654
No 218
>PTZ00052 thioredoxin reductase; Provisional
Probab=98.42 E-value=2.4e-07 Score=87.88 Aligned_cols=57 Identities=14% Similarity=0.172 Sum_probs=44.3
Q ss_pred hHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCcEEEcCEEEECCCCCCc
Q 019351 233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPN 290 (342)
Q Consensus 233 ~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~~~~~ 290 (342)
.+.+.+.+.+++.|+++++++.|+++... ++.+.....+|+++.+|.||+++|..|+
T Consensus 223 ~~~~~l~~~l~~~GV~i~~~~~v~~v~~~-~~~~~v~~~~g~~i~~D~vl~a~G~~pn 279 (499)
T PTZ00052 223 QCSEKVVEYMKEQGTLFLEGVVPINIEKM-DDKIKVLFSDGTTELFDTVLYATGRKPD 279 (499)
T ss_pred HHHHHHHHHHHHcCCEEEcCCeEEEEEEc-CCeEEEEECCCCEEEcCEEEEeeCCCCC
Confidence 45667778888899999999999999865 4443323336788999999999998774
No 219
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=98.42 E-value=2.3e-07 Score=93.10 Aligned_cols=41 Identities=22% Similarity=0.278 Sum_probs=38.9
Q ss_pred cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCc
Q 019351 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS 44 (342)
Q Consensus 4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~ 44 (342)
..||+|||||++||+||++|++.|++|+|+|+++.+||...
T Consensus 537 ~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~ 577 (1012)
T TIGR03315 537 AHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVK 577 (1012)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceee
Confidence 36999999999999999999999999999999999999875
No 220
>PRK14694 putative mercuric reductase; Provisional
Probab=98.41 E-value=2.6e-07 Score=87.14 Aligned_cols=57 Identities=11% Similarity=0.152 Sum_probs=45.9
Q ss_pred ChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCcEEEcCEEEECCCCCCc
Q 019351 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPN 290 (342)
Q Consensus 232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~~~~~ 290 (342)
..+...+.+.+++.|+++++++.|++|+.+ ++ ...+.++++++.+|.||+|+|..|+
T Consensus 218 ~~~~~~l~~~l~~~GI~v~~~~~v~~i~~~-~~-~~~v~~~~~~i~~D~vi~a~G~~pn 274 (468)
T PRK14694 218 PAVGEAIEAAFRREGIEVLKQTQASEVDYN-GR-EFILETNAGTLRAEQLLVATGRTPN 274 (468)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEc-CC-EEEEEECCCEEEeCEEEEccCCCCC
Confidence 356777888888899999999999999865 44 3445566668999999999998774
No 221
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.40 E-value=2.8e-07 Score=85.30 Aligned_cols=46 Identities=30% Similarity=0.494 Sum_probs=42.1
Q ss_pred CCCcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCccc
Q 019351 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSL 46 (342)
Q Consensus 1 m~~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t~ 46 (342)
|+.+||++|||+|.+|..||.++++.|.+|+++|+...+||.|-..
T Consensus 1 ~~~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGtCln~ 46 (454)
T COG1249 1 MMKEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLNV 46 (454)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCceEEee
Confidence 6678999999999999999999999998899999999999988543
No 222
>PRK13748 putative mercuric reductase; Provisional
Probab=98.40 E-value=2.7e-07 Score=89.16 Aligned_cols=58 Identities=14% Similarity=0.166 Sum_probs=45.8
Q ss_pred ChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCcEEEcCEEEECCCCCCcc
Q 019351 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNK 291 (342)
Q Consensus 232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~~~~~~ 291 (342)
..+...+.+.+++.|+++++++.|++|+.+ ++. ..+.++++++.+|.||+|+|..|+.
T Consensus 310 ~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~-~~~-~~v~~~~~~i~~D~vi~a~G~~pn~ 367 (561)
T PRK13748 310 PAIGEAVTAAFRAEGIEVLEHTQASQVAHV-DGE-FVLTTGHGELRADKLLVATGRAPNT 367 (561)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEEec-CCE-EEEEecCCeEEeCEEEEccCCCcCC
Confidence 356677778888899999999999999865 443 3455555689999999999988753
No 223
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=98.38 E-value=2.7e-07 Score=93.20 Aligned_cols=41 Identities=27% Similarity=0.357 Sum_probs=38.8
Q ss_pred cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCc
Q 019351 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS 44 (342)
Q Consensus 4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~ 44 (342)
..+|+|||||+|||+||++|+++|++|+|||+.+.+||..+
T Consensus 306 gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~ 346 (944)
T PRK12779 306 KPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLR 346 (944)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEE
Confidence 36899999999999999999999999999999999999875
No 224
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.37 E-value=3.8e-07 Score=88.17 Aligned_cols=42 Identities=24% Similarity=0.192 Sum_probs=37.6
Q ss_pred CCCcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcC
Q 019351 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES 43 (342)
Q Consensus 1 m~~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~ 43 (342)
|. ++||+|||+|++||+||..++++|.+|+|+||.+..||.+
T Consensus 1 ~~-~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~~g~s 42 (589)
T PRK08641 1 MA-KGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVKRSHS 42 (589)
T ss_pred CC-CccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCCCCcc
Confidence 44 4799999999999999999999999999999998877644
No 225
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.36 E-value=3.9e-07 Score=85.93 Aligned_cols=39 Identities=23% Similarity=0.423 Sum_probs=36.0
Q ss_pred ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCc
Q 019351 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS 44 (342)
Q Consensus 5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~ 44 (342)
|||+|||||.+|++||.+|+++|++|+|+|+.. +||.|-
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~-~GG~c~ 39 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP-LGGTCV 39 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc-ccCCee
Confidence 799999999999999999999999999999976 777764
No 226
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.35 E-value=4.1e-07 Score=80.05 Aligned_cols=44 Identities=27% Similarity=0.362 Sum_probs=35.0
Q ss_pred CcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCccc
Q 019351 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSL 46 (342)
Q Consensus 3 ~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t~ 46 (342)
+.+||+|||||++||+||.+++++|.+++|++....+||.....
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~gg~~~~~ 45 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPGGQLTKT 45 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCcCCccccc
Confidence 35899999999999999999999999955555555666655443
No 227
>PRK12831 putative oxidoreductase; Provisional
Probab=98.35 E-value=4.5e-07 Score=85.18 Aligned_cols=41 Identities=24% Similarity=0.234 Sum_probs=38.7
Q ss_pred cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCc
Q 019351 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS 44 (342)
Q Consensus 4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~ 44 (342)
..||+|||||++||+||++|++.|++|+|+|+.+.+||.+.
T Consensus 140 ~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~ 180 (464)
T PRK12831 140 GKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLV 180 (464)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeee
Confidence 47999999999999999999999999999999999999874
No 228
>PTZ00058 glutathione reductase; Provisional
Probab=98.34 E-value=4.5e-07 Score=86.68 Aligned_cols=42 Identities=26% Similarity=0.438 Sum_probs=38.1
Q ss_pred CcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCcc
Q 019351 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS 45 (342)
Q Consensus 3 ~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t 45 (342)
.+|||+|||||.+|.+||..+++.|.+|+++|++ .+||.|-.
T Consensus 47 ~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~-~~GGtCln 88 (561)
T PTZ00058 47 MVYDLIVIGGGSGGMAAARRAARNKAKVALVEKD-YLGGTCVN 88 (561)
T ss_pred ccccEEEECcCHHHHHHHHHHHHcCCeEEEEecc-cccccccc
Confidence 3699999999999999999999999999999996 78997743
No 229
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=98.32 E-value=4.8e-07 Score=85.91 Aligned_cols=40 Identities=28% Similarity=0.353 Sum_probs=35.3
Q ss_pred cEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCcc
Q 019351 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS 45 (342)
Q Consensus 6 DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t 45 (342)
.|+|||||++||++|..|.+.|++|++||+++.+||.++.
T Consensus 3 rVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~ 42 (531)
T PF00743_consen 3 RVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRY 42 (531)
T ss_dssp EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCH
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCee
Confidence 6999999999999999999999999999999999999863
No 230
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=98.31 E-value=5.2e-07 Score=84.40 Aligned_cols=57 Identities=11% Similarity=0.087 Sum_probs=40.6
Q ss_pred hHHHHHHHHHHHcC---cEEEcCCccceEEEc-----CCCcEEEEEe-CCcEEEcCEEEECCCCCC
Q 019351 233 ELPQAFARLSAVYG---GTYMLNKPECKVEFD-----EEGKVVGVTS-EGETAKCKKVVCDPSYLP 289 (342)
Q Consensus 233 ~l~~~l~~~~~~~G---~~i~~~~~V~~i~~~-----~~~~~~~v~~-~g~~~~a~~vI~~~~~~~ 289 (342)
.+...|.+.+++.+ ++++.+++|++++.+ +++..+.|+. +|++++||.||.|.|..+
T Consensus 118 ~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v~v~~~~g~~i~a~llVgADG~~S 183 (437)
T TIGR01989 118 NIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWVHITLSDGQVLYTKLLIGADGSNS 183 (437)
T ss_pred HHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCceEEEEcCCCEEEeeEEEEecCCCC
Confidence 45556666666654 899999999999752 1222234444 788999999999988764
No 231
>PRK14727 putative mercuric reductase; Provisional
Probab=98.29 E-value=6.4e-07 Score=84.76 Aligned_cols=43 Identities=19% Similarity=0.309 Sum_probs=40.1
Q ss_pred cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCccc
Q 019351 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSL 46 (342)
Q Consensus 4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t~ 46 (342)
++||+|||+|.+|+++|..|++.|.+|+++|+++.+||.|...
T Consensus 16 ~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG~c~n~ 58 (479)
T PRK14727 16 QLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGGCCVNV 58 (479)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcceeEeccc
Confidence 5999999999999999999999999999999998999988643
No 232
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=98.28 E-value=8.3e-07 Score=78.91 Aligned_cols=39 Identities=21% Similarity=0.348 Sum_probs=34.6
Q ss_pred ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcC
Q 019351 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES 43 (342)
Q Consensus 5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~ 43 (342)
-+|+|||||++||++|..|++.|.+|+|+|++..+-|.-
T Consensus 3 ~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~R~~g 41 (420)
T KOG2614|consen 3 PKVVIVGGGIVGLATALALHRKGIDVVVLESREDPRGEG 41 (420)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCeEEEEeeccccccCC
Confidence 489999999999999999999999999999977654443
No 233
>PRK11445 putative oxidoreductase; Provisional
Probab=98.28 E-value=6.8e-07 Score=81.17 Aligned_cols=34 Identities=32% Similarity=0.583 Sum_probs=32.1
Q ss_pred ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCC
Q 019351 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY 39 (342)
Q Consensus 5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~ 39 (342)
|||+|||||++|+++|..|+++ ++|+|+|+++..
T Consensus 2 ~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~ 35 (351)
T PRK11445 2 YDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQC 35 (351)
T ss_pred ceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCcc
Confidence 7999999999999999999999 999999998754
No 234
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=98.28 E-value=7.5e-07 Score=86.79 Aligned_cols=38 Identities=24% Similarity=0.383 Sum_probs=34.7
Q ss_pred CCCcccEEEECCCchHHHHHHhhhh-CCCeEEEEcCCCC
Q 019351 1 MDEEYDVIVLGTGLKECILSGLLSV-DGLKVLHMDRNDY 38 (342)
Q Consensus 1 m~~~~DViIiG~GiaGl~aA~~L~~-~G~~V~vlE~~~~ 38 (342)
|.+++||+|||||++||++|+.|++ .|.+|+|+|+++.
T Consensus 29 ~~~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~ 67 (634)
T PRK08294 29 LPDEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPG 67 (634)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCC
Confidence 5567999999999999999999999 5999999999864
No 235
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=98.28 E-value=7.5e-07 Score=81.25 Aligned_cols=37 Identities=22% Similarity=0.437 Sum_probs=34.5
Q ss_pred cEEEECCCchHHHHHHhhhhC--CCeEEEEcCCCCCCCc
Q 019351 6 DVIVLGTGLKECILSGLLSVD--GLKVLHMDRNDYYGGE 42 (342)
Q Consensus 6 DViIiG~GiaGl~aA~~L~~~--G~~V~vlE~~~~~GG~ 42 (342)
||+|||||++||++|+.|+++ |++|+|+|+++..||.
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~ 39 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGN 39 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCc
Confidence 899999999999999999987 9999999999877763
No 236
>PRK07538 hypothetical protein; Provisional
Probab=98.28 E-value=6.9e-07 Score=83.00 Aligned_cols=34 Identities=21% Similarity=0.342 Sum_probs=32.1
Q ss_pred cEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCC
Q 019351 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY 39 (342)
Q Consensus 6 DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~ 39 (342)
||+|||||++||++|+.|+++|++|+|+|+++.+
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~ 35 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPEL 35 (413)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcc
Confidence 8999999999999999999999999999998654
No 237
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=98.28 E-value=8.3e-07 Score=80.82 Aligned_cols=36 Identities=22% Similarity=0.169 Sum_probs=33.2
Q ss_pred ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCC
Q 019351 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYG 40 (342)
Q Consensus 5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~G 40 (342)
.||+|||||++|+.||+.|+++|++|+|+|+++...
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~~ 38 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVKK 38 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccC
Confidence 489999999999999999999999999999877654
No 238
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=98.28 E-value=7.2e-07 Score=79.03 Aligned_cols=45 Identities=27% Similarity=0.304 Sum_probs=38.9
Q ss_pred CcccEEEECCCchHHHHHHhhhhC------CCeEEEEcCCCCCCCcCcccc
Q 019351 3 EEYDVIVLGTGLKECILSGLLSVD------GLKVLHMDRNDYYGGESSSLN 47 (342)
Q Consensus 3 ~~~DViIiG~GiaGl~aA~~L~~~------G~~V~vlE~~~~~GG~~~t~~ 47 (342)
+++||+|||||.+||+||.+|.+. -.+|+|+||+..+||.+-+-.
T Consensus 75 e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlSGa 125 (621)
T KOG2415|consen 75 EEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLSGA 125 (621)
T ss_pred ccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceecce
Confidence 469999999999999999998853 368999999999999876643
No 239
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=98.27 E-value=8.9e-07 Score=88.71 Aligned_cols=41 Identities=24% Similarity=0.326 Sum_probs=38.7
Q ss_pred cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCc
Q 019351 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS 44 (342)
Q Consensus 4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~ 44 (342)
..+|+|||||.+||+||++|+++|++|+|+|+.+.+||...
T Consensus 539 gKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr 579 (1019)
T PRK09853 539 RKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVK 579 (1019)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCccee
Confidence 35899999999999999999999999999999999999875
No 240
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.26 E-value=1.5e-05 Score=74.88 Aligned_cols=57 Identities=21% Similarity=0.176 Sum_probs=46.3
Q ss_pred ChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCcEEEcCEEEECCCCCCc
Q 019351 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPN 290 (342)
Q Consensus 232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~~~~~ 290 (342)
..+.+.+.+.+++.|++++++++|++|.. ++++..+.++++++.||.||+|+|..|+
T Consensus 191 ~~~~~~l~~~l~~~gI~v~~~~~v~~i~~--~~~~~~v~~~~~~i~~d~vi~a~G~~p~ 247 (444)
T PRK09564 191 KEITDVMEEELRENGVELHLNEFVKSLIG--EDKVEGVVTDKGEYEADVVIVATGVKPN 247 (444)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEec--CCcEEEEEeCCCEEEcCEEEECcCCCcC
Confidence 35667777888889999999999999964 3455666777778999999999998764
No 241
>PLN02507 glutathione reductase
Probab=98.26 E-value=9.1e-07 Score=83.94 Aligned_cols=56 Identities=21% Similarity=0.187 Sum_probs=43.6
Q ss_pred hHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCcEEEcCEEEECCCCCCc
Q 019351 233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLPN 290 (342)
Q Consensus 233 ~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~-~g~~~~a~~vI~~~~~~~~ 290 (342)
.+...+.+.+++.|+++++++.|++++.+ ++++. +.+ ++.++.+|.||+++|..|+
T Consensus 245 ~~~~~l~~~l~~~GI~i~~~~~V~~i~~~-~~~~~-v~~~~g~~i~~D~vl~a~G~~pn 301 (499)
T PLN02507 245 EMRAVVARNLEGRGINLHPRTNLTQLTKT-EGGIK-VITDHGEEFVADVVLFATGRAPN 301 (499)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEEe-CCeEE-EEECCCcEEEcCEEEEeecCCCC
Confidence 45566667778889999999999999865 44433 444 6778999999999998764
No 242
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.25 E-value=4.3e-05 Score=73.12 Aligned_cols=60 Identities=17% Similarity=0.132 Sum_probs=50.2
Q ss_pred CChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe----CC--cEEEcCEEEECCCCCCcc
Q 019351 231 LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EG--ETAKCKKVVCDPSYLPNK 291 (342)
Q Consensus 231 ~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~----~g--~~~~a~~vI~~~~~~~~~ 291 (342)
...++.++++.|+++|++|+++++|++|..+ ++++++|++ +| .+++|++||+|+|.|.+.
T Consensus 127 p~~l~~al~~~A~~~Ga~i~~~t~V~~i~~~-~~~v~gv~v~~~~~g~~~~i~a~~VVnAaG~wa~~ 192 (516)
T TIGR03377 127 PFRLVAANVLDAQEHGARIFTYTKVTGLIRE-GGRVTGVKVEDHKTGEEERIEAQVVINAAGIWAGR 192 (516)
T ss_pred HHHHHHHHHHHHHHcCCEEEcCcEEEEEEEE-CCEEEEEEEEEcCCCcEEEEEcCEEEECCCcchHH
Confidence 4678899999999999999999999999887 677766654 23 379999999999998654
No 243
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=98.25 E-value=1e-06 Score=83.16 Aligned_cols=58 Identities=21% Similarity=0.234 Sum_probs=45.2
Q ss_pred ChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCcEEEcCEEEECCCCCCc
Q 019351 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLPN 290 (342)
Q Consensus 232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~-~g~~~~a~~vI~~~~~~~~ 290 (342)
..+.+.+.+.+++.|+++++++.|++|..+ +++...++. +++++.+|.||+++|..|+
T Consensus 231 ~~~~~~l~~~L~~~GI~i~~~~~v~~i~~~-~~~~~~v~~~~g~~i~~D~vl~a~G~~Pn 289 (486)
T TIGR01423 231 STLRKELTKQLRANGINIMTNENPAKVTLN-ADGSKHVTFESGKTLDVDVVMMAIGRVPR 289 (486)
T ss_pred HHHHHHHHHHHHHcCCEEEcCCEEEEEEEc-CCceEEEEEcCCCEEEcCEEEEeeCCCcC
Confidence 456677888888899999999999999865 333233443 6778999999999998764
No 244
>PTZ00367 squalene epoxidase; Provisional
Probab=98.24 E-value=9.9e-07 Score=84.40 Aligned_cols=34 Identities=38% Similarity=0.641 Sum_probs=32.5
Q ss_pred cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (342)
Q Consensus 4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~ 37 (342)
++||+|||||++|+++|+.|+++|++|+|+|++.
T Consensus 33 ~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~ 66 (567)
T PTZ00367 33 DYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL 66 (567)
T ss_pred CccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence 5899999999999999999999999999999975
No 245
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.23 E-value=1.1e-06 Score=90.00 Aligned_cols=42 Identities=26% Similarity=0.331 Sum_probs=39.5
Q ss_pred cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCcc
Q 019351 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS 45 (342)
Q Consensus 4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t 45 (342)
.+||+|||||++||+||.+|+++|++|+|+|+++.+||....
T Consensus 163 ~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~ 204 (985)
T TIGR01372 163 HCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLS 204 (985)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeec
Confidence 579999999999999999999999999999999999998753
No 246
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=98.22 E-value=1.2e-06 Score=82.07 Aligned_cols=41 Identities=22% Similarity=0.233 Sum_probs=38.4
Q ss_pred cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCc
Q 019351 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS 44 (342)
Q Consensus 4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~ 44 (342)
..||+|||||.+||++|+.|++.|++|+|+|+.+.+||.+.
T Consensus 133 ~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~ 173 (449)
T TIGR01316 133 HKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVT 173 (449)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEee
Confidence 47999999999999999999999999999999999999764
No 247
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=98.22 E-value=1.1e-06 Score=89.51 Aligned_cols=41 Identities=20% Similarity=0.142 Sum_probs=38.6
Q ss_pred cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCc
Q 019351 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS 44 (342)
Q Consensus 4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~ 44 (342)
..||+|||||++||+||++|+++|++|+|+|+.+.+||..+
T Consensus 430 ~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~ 470 (1006)
T PRK12775 430 LGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQ 470 (1006)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceee
Confidence 36899999999999999999999999999999999999765
No 248
>PRK10262 thioredoxin reductase; Provisional
Probab=98.22 E-value=1.2e-06 Score=78.44 Aligned_cols=42 Identities=14% Similarity=0.244 Sum_probs=36.9
Q ss_pred CcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCcc
Q 019351 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS 45 (342)
Q Consensus 3 ~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t 45 (342)
..+||+|||||++||+||..|+++|++|+++|+. ..||.+..
T Consensus 5 ~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~-~~gg~~~~ 46 (321)
T PRK10262 5 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGM-EKGGQLTT 46 (321)
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEee-cCCCceec
Confidence 4689999999999999999999999999999965 67876643
No 249
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.22 E-value=1.3e-06 Score=85.86 Aligned_cols=41 Identities=24% Similarity=0.390 Sum_probs=38.5
Q ss_pred cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCc
Q 019351 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS 44 (342)
Q Consensus 4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~ 44 (342)
..+|+|||||.+||+||++|++.|++|+|+|+.+.+||...
T Consensus 327 ~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~ 367 (654)
T PRK12769 327 DKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLT 367 (654)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceee
Confidence 36899999999999999999999999999999999999864
No 250
>PLN02852 ferredoxin-NADP+ reductase
Probab=98.21 E-value=1.4e-06 Score=81.66 Aligned_cols=42 Identities=26% Similarity=0.207 Sum_probs=38.6
Q ss_pred cccEEEECCCchHHHHHHhhhh--CCCeEEEEcCCCCCCCcCcc
Q 019351 4 EYDVIVLGTGLKECILSGLLSV--DGLKVLHMDRNDYYGGESSS 45 (342)
Q Consensus 4 ~~DViIiG~GiaGl~aA~~L~~--~G~~V~vlE~~~~~GG~~~t 45 (342)
..+|+|||||++||.||..|++ .|++|+|+|+.+.+||..+.
T Consensus 26 ~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~ 69 (491)
T PLN02852 26 PLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRS 69 (491)
T ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEee
Confidence 3589999999999999999987 79999999999999998864
No 251
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=98.21 E-value=1.2e-06 Score=84.55 Aligned_cols=35 Identities=20% Similarity=0.364 Sum_probs=32.9
Q ss_pred CcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (342)
Q Consensus 3 ~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~ 37 (342)
+..+|+|||||++||++|..|+++|.+|+|+|+++
T Consensus 80 ~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~ 114 (668)
T PLN02927 80 KKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL 114 (668)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence 45899999999999999999999999999999975
No 252
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=98.20 E-value=1.4e-06 Score=79.84 Aligned_cols=37 Identities=22% Similarity=0.154 Sum_probs=34.1
Q ss_pred ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCC
Q 019351 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG 41 (342)
Q Consensus 5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG 41 (342)
.||+|||||++|+.||+.|+++|.+|+|+|+++..+-
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~~~ 37 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEKLT 37 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEeccccccC
Confidence 4899999999999999999999999999999877654
No 253
>PLN02546 glutathione reductase
Probab=98.19 E-value=1.7e-06 Score=82.88 Aligned_cols=43 Identities=19% Similarity=0.186 Sum_probs=37.8
Q ss_pred cccEEEECCCchHHHHHHhhhhCCCeEEEEcC---------CCCCCCcCccc
Q 019351 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDR---------NDYYGGESSSL 46 (342)
Q Consensus 4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~---------~~~~GG~~~t~ 46 (342)
+|||+|||+|.+|+.||..|++.|++|+|+|+ ...+||.|-..
T Consensus 79 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~~~~~~~~~~~GGtC~n~ 130 (558)
T PLN02546 79 DFDLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSDTLGGVGGTCVLR 130 (558)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCccCcccCc
Confidence 58999999999999999999999999999996 24678877543
No 254
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=98.17 E-value=1.9e-06 Score=85.97 Aligned_cols=41 Identities=24% Similarity=0.305 Sum_probs=38.5
Q ss_pred cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCc
Q 019351 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS 44 (342)
Q Consensus 4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~ 44 (342)
..||+|||||++||+||++|+++|++|+|+|+.+.+||...
T Consensus 431 ~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~ 471 (752)
T PRK12778 431 GKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLK 471 (752)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeee
Confidence 46999999999999999999999999999999999999865
No 255
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=98.17 E-value=2e-06 Score=74.24 Aligned_cols=41 Identities=34% Similarity=0.545 Sum_probs=36.4
Q ss_pred cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCC--CCCCcCc
Q 019351 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND--YYGGESS 44 (342)
Q Consensus 4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~--~~GG~~~ 44 (342)
.+||||||+|++||+||..|+.+|++|+|+|+.. .+||.+.
T Consensus 5 ~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeqnlGGQAf 47 (552)
T COG3573 5 TADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQNLGGQAF 47 (552)
T ss_pred cccEEEECccHHHHHHHHHHHhcCceEEEEcccccccccceee
Confidence 5899999999999999999999999999998854 4777653
No 256
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=98.16 E-value=2e-06 Score=83.61 Aligned_cols=42 Identities=31% Similarity=0.436 Sum_probs=38.0
Q ss_pred cccEEEECCCchHHHHHHhhhhCCCeEEEEcCC-CCCCCcCcc
Q 019351 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRN-DYYGGESSS 45 (342)
Q Consensus 4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~-~~~GG~~~t 45 (342)
+|||+|||+|.+|..||..+++.|++|+|+|+. +.+||.|-.
T Consensus 116 ~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~~~lGGtCvn 158 (659)
T PTZ00153 116 EYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGGTCVN 158 (659)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCccccceeE
Confidence 699999999999999999999999999999974 468997743
No 257
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=98.15 E-value=2.2e-06 Score=80.96 Aligned_cols=41 Identities=29% Similarity=0.347 Sum_probs=38.3
Q ss_pred cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCc
Q 019351 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS 44 (342)
Q Consensus 4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~ 44 (342)
..||+|||||.+||++|..|++.|++|+|+|+.+.+||...
T Consensus 143 ~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~ 183 (471)
T PRK12810 143 GKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLR 183 (471)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceee
Confidence 36999999999999999999999999999999999998754
No 258
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=98.14 E-value=2.2e-06 Score=79.75 Aligned_cols=35 Identities=23% Similarity=0.372 Sum_probs=32.1
Q ss_pred cEEEECCCchHHHHHHhhhhCC-CeEEEEcCCCCCC
Q 019351 6 DVIVLGTGLKECILSGLLSVDG-LKVLHMDRNDYYG 40 (342)
Q Consensus 6 DViIiG~GiaGl~aA~~L~~~G-~~V~vlE~~~~~G 40 (342)
+|+|||||++||++|..|+++| .+|+|+|+++.++
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~ 37 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFG 37 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCC
Confidence 6999999999999999999998 5999999987654
No 259
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.12 E-value=2.6e-06 Score=81.19 Aligned_cols=43 Identities=26% Similarity=0.281 Sum_probs=38.9
Q ss_pred CCcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCc
Q 019351 2 DEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS 44 (342)
Q Consensus 2 ~~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~ 44 (342)
..++||+|||||.+||.||..++++|.+|+|+||....+|.+.
T Consensus 4 ~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~rg~t~ 46 (562)
T COG1053 4 IHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRGHTV 46 (562)
T ss_pred cccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCCCchh
Confidence 4579999999999999999999999999999999988885544
No 260
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=98.12 E-value=0.00012 Score=69.09 Aligned_cols=37 Identities=32% Similarity=0.522 Sum_probs=33.5
Q ss_pred CcccEEEECCCchHHHHHHhhhhCC-CeEEEEcCCCCC
Q 019351 3 EEYDVIVLGTGLKECILSGLLSVDG-LKVLHMDRNDYY 39 (342)
Q Consensus 3 ~~~DViIiG~GiaGl~aA~~L~~~G-~~V~vlE~~~~~ 39 (342)
..||.||||||-+|++.|.+|++.- .+|++||++..+
T Consensus 56 ~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~ 93 (623)
T KOG1238|consen 56 SSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP 93 (623)
T ss_pred cCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence 4699999999999999999999975 899999997665
No 261
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=98.09 E-value=3.3e-06 Score=82.75 Aligned_cols=40 Identities=25% Similarity=0.288 Sum_probs=38.1
Q ss_pred ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCc
Q 019351 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS 44 (342)
Q Consensus 5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~ 44 (342)
.+|+|||||++||++|+.|++.|++|+|+|+.+.+||...
T Consensus 194 k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~ 233 (652)
T PRK12814 194 KKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMR 233 (652)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceee
Confidence 6899999999999999999999999999999999999864
No 262
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=98.08 E-value=3.9e-06 Score=78.97 Aligned_cols=41 Identities=24% Similarity=0.278 Sum_probs=38.1
Q ss_pred cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCc
Q 019351 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS 44 (342)
Q Consensus 4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~ 44 (342)
..+|+|||||.+||++|..|++.|++|+|+|+.+.+||...
T Consensus 140 ~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~ 180 (457)
T PRK11749 140 GKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLR 180 (457)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEee
Confidence 36899999999999999999999999999999999998754
No 263
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=98.08 E-value=4e-06 Score=78.99 Aligned_cols=41 Identities=27% Similarity=0.407 Sum_probs=38.5
Q ss_pred cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCc
Q 019351 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS 44 (342)
Q Consensus 4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~ 44 (342)
..+|+|||+|.+||++|..|++.|++|+|+|+.+.+||...
T Consensus 141 ~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~ 181 (467)
T TIGR01318 141 GKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLT 181 (467)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceee
Confidence 36899999999999999999999999999999999999765
No 264
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.06 E-value=3.7e-06 Score=82.28 Aligned_cols=41 Identities=27% Similarity=0.346 Sum_probs=38.6
Q ss_pred cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCc
Q 019351 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS 44 (342)
Q Consensus 4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~ 44 (342)
..+|+|||+|++||++|+.|++.|++|+|+|+.+.+||...
T Consensus 310 ~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~ 350 (639)
T PRK12809 310 SEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLT 350 (639)
T ss_pred CCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeee
Confidence 46899999999999999999999999999999999999865
No 265
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=98.04 E-value=4.9e-06 Score=78.71 Aligned_cols=57 Identities=14% Similarity=-0.006 Sum_probs=42.6
Q ss_pred hHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCC---cEEEcCEEEECCCCCCc
Q 019351 233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEG---ETAKCKKVVCDPSYLPN 290 (342)
Q Consensus 233 ~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~g---~~~~a~~vI~~~~~~~~ 290 (342)
.+...+.+.+++.|++|++++.++++... ++.+....+++ +++.||.||+++|..|+
T Consensus 221 ~~~~~l~~~L~~~gV~i~~~~~v~~v~~~-~~~~~v~~~~~~~~~~i~~D~vl~a~G~~pn 280 (484)
T TIGR01438 221 DCANKVGEHMEEHGVKFKRQFVPIKVEQI-EAKVKVTFTDSTNGIEEEYDTVLLAIGRDAC 280 (484)
T ss_pred HHHHHHHHHHHHcCCEEEeCceEEEEEEc-CCeEEEEEecCCcceEEEeCEEEEEecCCcC
Confidence 45667777888889999999999999865 44433222343 37999999999998764
No 266
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=98.03 E-value=4.3e-06 Score=77.62 Aligned_cols=41 Identities=27% Similarity=0.233 Sum_probs=39.0
Q ss_pred ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCcc
Q 019351 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS 45 (342)
Q Consensus 5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t 45 (342)
-+|+|||||++||.||+.|+++|++|+|+|+.+.+||+...
T Consensus 124 ~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~y 164 (457)
T COG0493 124 KKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLY 164 (457)
T ss_pred CEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEe
Confidence 47999999999999999999999999999999999999863
No 267
>PTZ00188 adrenodoxin reductase; Provisional
Probab=98.02 E-value=5.6e-06 Score=76.72 Aligned_cols=42 Identities=17% Similarity=0.078 Sum_probs=37.5
Q ss_pred ccEEEECCCchHHHHHHhhh-hCCCeEEEEcCCCCCCCcCccc
Q 019351 5 YDVIVLGTGLKECILSGLLS-VDGLKVLHMDRNDYYGGESSSL 46 (342)
Q Consensus 5 ~DViIiG~GiaGl~aA~~L~-~~G~~V~vlE~~~~~GG~~~t~ 46 (342)
..|+|||||++||.||.+|. +.|++|+|+|+.+.+||..+..
T Consensus 40 krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~G 82 (506)
T PTZ00188 40 FKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRYG 82 (506)
T ss_pred CEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEEe
Confidence 47999999999999999764 6799999999999999988653
No 268
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=98.02 E-value=5.4e-06 Score=68.83 Aligned_cols=31 Identities=29% Similarity=0.432 Sum_probs=29.7
Q ss_pred cEEEECCCchHHHHHHhhhhCCCeEEEEcCC
Q 019351 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRN 36 (342)
Q Consensus 6 DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~ 36 (342)
||+|||||.+|++||.+|++.|.+|+++|+.
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~ 31 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKS 31 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSS
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEecc
Confidence 7999999999999999999999999999875
No 269
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=97.96 E-value=8.1e-06 Score=78.90 Aligned_cols=56 Identities=16% Similarity=0.141 Sum_probs=40.4
Q ss_pred hHHHHHHHHHHHcCcEEEcCCccceEEEcCC--CcEEEEEe----CCc--EEEcCEEEECCCCC
Q 019351 233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEE--GKVVGVTS----EGE--TAKCKKVVCDPSYL 288 (342)
Q Consensus 233 ~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~--~~~~~v~~----~g~--~~~a~~vI~~~~~~ 288 (342)
.+...+...++..+++|+.++.|+++..+++ +++++|.. ++. .+.|+.||+|+|-+
T Consensus 127 ~~~r~l~~~l~~~~~~i~~~~~v~~Ll~d~~~~GrV~Gv~~~~~~~g~~~~i~AkaVVLATGG~ 190 (614)
T TIGR02061 127 SYKPIVAEAAKNALGDIFERIFIVKLLLDKNTPNRIAGAVGFNVRANEVHVFKAKTVIVAAGGA 190 (614)
T ss_pred hHHHHHHHHHHhCCCeEEcccEEEEEEecCCCCCeEEEEEEEEeCCCcEEEEECCEEEECCCcc
Confidence 4444555555666789999999999987622 68888764 343 57899999998743
No 270
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=97.96 E-value=8.4e-06 Score=81.07 Aligned_cols=38 Identities=26% Similarity=0.221 Sum_probs=34.9
Q ss_pred ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCc
Q 019351 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGE 42 (342)
Q Consensus 5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~ 42 (342)
.+|+|||||++||+||++|++.|++|+|+|+.+..|+.
T Consensus 384 KKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~i~gl~ 421 (1028)
T PRK06567 384 YNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLKITLLP 421 (1028)
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCeEEEEccccccccc
Confidence 58999999999999999999999999999998776554
No 271
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=97.95 E-value=8.4e-06 Score=77.12 Aligned_cols=40 Identities=28% Similarity=0.336 Sum_probs=37.9
Q ss_pred ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCc
Q 019351 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS 44 (342)
Q Consensus 5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~ 44 (342)
.+|+|||+|++|+++|..|+++|++|+|+|+.+++||...
T Consensus 144 ~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~ 183 (485)
T TIGR01317 144 KKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLM 183 (485)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceee
Confidence 6899999999999999999999999999999999998764
No 272
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=97.94 E-value=1.5e-05 Score=55.63 Aligned_cols=35 Identities=29% Similarity=0.357 Sum_probs=33.4
Q ss_pred cEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCC
Q 019351 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYG 40 (342)
Q Consensus 6 DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~G 40 (342)
.|+|||||..|+-+|..|++.|.+|+++|+++.+.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~ 35 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL 35 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh
Confidence 48999999999999999999999999999998887
No 273
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=97.94 E-value=1.1e-05 Score=73.34 Aligned_cols=41 Identities=24% Similarity=0.275 Sum_probs=38.2
Q ss_pred cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCc
Q 019351 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS 44 (342)
Q Consensus 4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~ 44 (342)
..+|+|||+|.+|+.+|..|++.|++|+++|+.+.+||...
T Consensus 18 ~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~ 58 (352)
T PRK12770 18 GKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLML 58 (352)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceee
Confidence 36899999999999999999999999999999999998764
No 274
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=97.92 E-value=9.6e-06 Score=78.37 Aligned_cols=40 Identities=23% Similarity=0.165 Sum_probs=37.7
Q ss_pred ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCc
Q 019351 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS 44 (342)
Q Consensus 5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~ 44 (342)
-+|+|||+|++||++|+.|++.|++|+|+|+.+.+||..+
T Consensus 138 ~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~ 177 (564)
T PRK12771 138 KRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMR 177 (564)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeee
Confidence 5899999999999999999999999999999999999764
No 275
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=97.92 E-value=1.1e-05 Score=76.09 Aligned_cols=56 Identities=9% Similarity=0.046 Sum_probs=43.0
Q ss_pred hHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCC--cEEEcCEEEECCCCCCc
Q 019351 233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEG--ETAKCKKVVCDPSYLPN 290 (342)
Q Consensus 233 ~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~g--~~~~a~~vI~~~~~~~~ 290 (342)
.+.+.+.+.+++.|+++++++.|++|+.+ +.. ..+..++ .++.+|.||+|+|..|+
T Consensus 212 e~~~~l~~~L~~~GI~i~~~~~V~~i~~~-~~~-v~~~~~g~~~~i~~D~vivA~G~~p~ 269 (458)
T PRK06912 212 DIAHILREKLENDGVKIFTGAALKGLNSY-KKQ-ALFEYEGSIQEVNAEFVLVSVGRKPR 269 (458)
T ss_pred HHHHHHHHHHHHCCCEEEECCEEEEEEEc-CCE-EEEEECCceEEEEeCEEEEecCCccC
Confidence 56667778888899999999999999765 332 3344444 36999999999998764
No 276
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=97.85 E-value=1.7e-05 Score=80.69 Aligned_cols=35 Identities=23% Similarity=0.405 Sum_probs=33.3
Q ss_pred cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCC
Q 019351 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY 38 (342)
Q Consensus 4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~ 38 (342)
++||+|||||.+||+||..++++|.+|+|+||...
T Consensus 13 ~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~ 47 (897)
T PRK13800 13 DCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV 47 (897)
T ss_pred ecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence 58999999999999999999999999999999875
No 277
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.84 E-value=0.00024 Score=65.04 Aligned_cols=40 Identities=13% Similarity=0.255 Sum_probs=33.8
Q ss_pred ccEEEECCCchHHHHHHhhhhCC---CeEEEEcCCCCCCCcCc
Q 019351 5 YDVIVLGTGLKECILSGLLSVDG---LKVLHMDRNDYYGGESS 44 (342)
Q Consensus 5 ~DViIiG~GiaGl~aA~~L~~~G---~~V~vlE~~~~~GG~~~ 44 (342)
++|+|||+|.+|+++|..|.+.- ..|.|+|+.+..|+-..
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~Gia 44 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIA 44 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCcc
Confidence 68999999999999999999752 23999999988876554
No 278
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=97.82 E-value=4.9e-05 Score=68.40 Aligned_cols=34 Identities=38% Similarity=0.569 Sum_probs=26.9
Q ss_pred cccEEEECCCchHHHHHHhhhhCC-CeEEEEcCCC
Q 019351 4 EYDVIVLGTGLKECILSGLLSVDG-LKVLHMDRND 37 (342)
Q Consensus 4 ~~DViIiG~GiaGl~aA~~L~~~G-~~V~vlE~~~ 37 (342)
.+|+|+||.|+++|+.|..|.+.+ .+++.||+++
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~ 36 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRP 36 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-S
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCC
Confidence 589999999999999999999987 9999999863
No 279
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=97.82 E-value=1.7e-05 Score=78.35 Aligned_cols=40 Identities=25% Similarity=0.318 Sum_probs=38.6
Q ss_pred ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCc
Q 019351 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS 44 (342)
Q Consensus 5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~ 44 (342)
..|+|||+|.+||.||-+|-+.|+.|+|+|+.+++||...
T Consensus 1786 ~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~ 1825 (2142)
T KOG0399|consen 1786 KRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLM 1825 (2142)
T ss_pred cEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceee
Confidence 6799999999999999999999999999999999999886
No 280
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=97.80 E-value=1.9e-05 Score=78.87 Aligned_cols=33 Identities=18% Similarity=0.282 Sum_probs=31.5
Q ss_pred cEEEECCCchHHHHHHhhhhC--CCeEEEEcCCCC
Q 019351 6 DVIVLGTGLKECILSGLLSVD--GLKVLHMDRNDY 38 (342)
Q Consensus 6 DViIiG~GiaGl~aA~~L~~~--G~~V~vlE~~~~ 38 (342)
+|+|||||++||++|..|+++ |++|+|+|+++.
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~ 36 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP 36 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence 799999999999999999998 899999999886
No 281
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=97.79 E-value=2.4e-05 Score=73.79 Aligned_cols=57 Identities=19% Similarity=0.200 Sum_probs=44.2
Q ss_pred hHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCcEEEcCEEEECCCCCCc
Q 019351 233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPN 290 (342)
Q Consensus 233 ~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~~~~~ 290 (342)
.+...+.+.+++.|+++++++.|++|+.+ ++++.....+|.++.+|.||+++|..|+
T Consensus 219 ~~~~~l~~~L~~~gV~i~~~~~v~~v~~~-~~~~~v~~~~g~~l~~D~vl~a~G~~pn 275 (466)
T PRK07845 219 DAAEVLEEVFARRGMTVLKRSRAESVERT-GDGVVVTLTDGRTVEGSHALMAVGSVPN 275 (466)
T ss_pred HHHHHHHHHHHHCCcEEEcCCEEEEEEEe-CCEEEEEECCCcEEEecEEEEeecCCcC
Confidence 45566777778889999999999999865 4444433347788999999999998764
No 282
>PRK13984 putative oxidoreductase; Provisional
Probab=97.79 E-value=2.4e-05 Score=76.30 Aligned_cols=41 Identities=20% Similarity=0.220 Sum_probs=38.1
Q ss_pred cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCc
Q 019351 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS 44 (342)
Q Consensus 4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~ 44 (342)
..+|+|||+|.+|+++|..|+++|++|+|+|+.+.+||...
T Consensus 283 ~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~ 323 (604)
T PRK13984 283 NKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMR 323 (604)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEe
Confidence 46899999999999999999999999999999999998754
No 283
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=97.77 E-value=2.6e-05 Score=68.66 Aligned_cols=42 Identities=26% Similarity=0.437 Sum_probs=39.9
Q ss_pred cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCcc
Q 019351 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS 45 (342)
Q Consensus 4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t 45 (342)
++||+|||+|+.|-.||...++.|++...+|++...||.|-.
T Consensus 39 d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LGGTcLn 80 (506)
T KOG1335|consen 39 DYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGGTCLN 80 (506)
T ss_pred cCCEEEECCCCchHHHHHHHHHhcceeEEEeccCccCceeee
Confidence 599999999999999999999999999999999999998854
No 284
>PRK07846 mycothione reductase; Reviewed
Probab=97.72 E-value=3.5e-05 Score=72.37 Aligned_cols=54 Identities=20% Similarity=0.278 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCcEEEcCEEEECCCCCCc
Q 019351 234 LPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLPN 290 (342)
Q Consensus 234 l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~-~g~~~~a~~vI~~~~~~~~ 290 (342)
+.+.+.+. .+.|++++++++|++++.+ ++++ .+++ ++.++.+|.||+|+|..|+
T Consensus 209 ~~~~l~~l-~~~~v~i~~~~~v~~i~~~-~~~v-~v~~~~g~~i~~D~vl~a~G~~pn 263 (451)
T PRK07846 209 ISERFTEL-ASKRWDVRLGRNVVGVSQD-GSGV-TLRLDDGSTVEADVLLVATGRVPN 263 (451)
T ss_pred HHHHHHHH-HhcCeEEEeCCEEEEEEEc-CCEE-EEEECCCcEeecCEEEEEECCccC
Confidence 33344332 3568999999999999865 4443 3444 6778999999999998764
No 285
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=97.70 E-value=1.4e-05 Score=64.60 Aligned_cols=41 Identities=24% Similarity=0.345 Sum_probs=36.5
Q ss_pred cccEEEECCCchHHHHHHhhhhC--CCeEEEEcCCCCCCCcCc
Q 019351 4 EYDVIVLGTGLKECILSGLLSVD--GLKVLHMDRNDYYGGESS 44 (342)
Q Consensus 4 ~~DViIiG~GiaGl~aA~~L~~~--G~~V~vlE~~~~~GG~~~ 44 (342)
+.||+|||+|-+||+|||..+++ ..+|.++|+.-.+||-++
T Consensus 76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGGaW 118 (328)
T KOG2960|consen 76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGGAW 118 (328)
T ss_pred ccceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCccc
Confidence 47999999999999999999955 489999999998888765
No 286
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.69 E-value=4e-05 Score=72.02 Aligned_cols=54 Identities=22% Similarity=0.300 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCcEEEcCEEEECCCCCCc
Q 019351 234 LPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLPN 290 (342)
Q Consensus 234 l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~-~g~~~~a~~vI~~~~~~~~ 290 (342)
+...+.+. ...|+++++++.|++++.+ ++++. ++. +|.++.+|.||+++|..|+
T Consensus 212 ~~~~l~~~-~~~gI~i~~~~~V~~i~~~-~~~v~-v~~~~g~~i~~D~vl~a~G~~pn 266 (452)
T TIGR03452 212 ISDRFTEI-AKKKWDIRLGRNVTAVEQD-GDGVT-LTLDDGSTVTADVLLVATGRVPN 266 (452)
T ss_pred HHHHHHHH-HhcCCEEEeCCEEEEEEEc-CCeEE-EEEcCCCEEEcCEEEEeeccCcC
Confidence 34444443 3468999999999999865 44433 443 6778999999999998764
No 287
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=97.63 E-value=4.9e-05 Score=70.19 Aligned_cols=36 Identities=36% Similarity=0.419 Sum_probs=32.6
Q ss_pred CCCcccEEEECCCchHHHHHHhhhhCCCeEEEEcCC
Q 019351 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRN 36 (342)
Q Consensus 1 m~~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~ 36 (342)
|...|||||||||++|+-||+..++.|.+++++--+
T Consensus 1 ~~~~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~ 36 (621)
T COG0445 1 MPKEYDVIVIGGGHAGVEAALAAARMGAKTLLLTLN 36 (621)
T ss_pred CCCCCceEEECCCccchHHHHhhhccCCeEEEEEcC
Confidence 556799999999999999999999999999998664
No 288
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=97.59 E-value=0.00084 Score=63.40 Aligned_cols=35 Identities=17% Similarity=0.294 Sum_probs=31.8
Q ss_pred ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCC
Q 019351 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY 39 (342)
Q Consensus 5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~ 39 (342)
-+|+|||||.+|+-+|..|++.|.+|+++|+.+.+
T Consensus 171 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~ 205 (461)
T TIGR01350 171 ESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRI 205 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCC
Confidence 47999999999999999999999999999987543
No 289
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=97.59 E-value=0.00084 Score=63.42 Aligned_cols=35 Identities=23% Similarity=0.497 Sum_probs=31.8
Q ss_pred ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCC
Q 019351 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY 39 (342)
Q Consensus 5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~ 39 (342)
-.|+|||||..|+-+|..|++.|.+|+++|+++++
T Consensus 176 ~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~ 210 (461)
T PRK05249 176 RSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRL 210 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCc
Confidence 36999999999999999999999999999997544
No 290
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=97.56 E-value=8.6e-05 Score=67.89 Aligned_cols=34 Identities=21% Similarity=0.341 Sum_probs=31.5
Q ss_pred cEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCC
Q 019351 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYG 40 (342)
Q Consensus 6 DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~G 40 (342)
||+|||+|++||++|..|++. ++|+|+-|.+.--
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~~~ 42 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPLGE 42 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCCCC
Confidence 999999999999999999998 9999999976654
No 291
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.53 E-value=0.0012 Score=62.49 Aligned_cols=47 Identities=23% Similarity=0.179 Sum_probs=35.3
Q ss_pred HHcCcEEEcCCccceEEEcCCCcEEEEEeCC---cEEEcCEEEECCCCCCc
Q 019351 243 AVYGGTYMLNKPECKVEFDEEGKVVGVTSEG---ETAKCKKVVCDPSYLPN 290 (342)
Q Consensus 243 ~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~g---~~~~a~~vI~~~~~~~~ 290 (342)
++.|+++++++.|++|+.+ ++.+.....++ .++.+|.||+|+|..|+
T Consensus 224 ~~~gV~i~~~~~V~~i~~~-~~~v~v~~~~gg~~~~i~~D~vi~a~G~~p~ 273 (462)
T PRK06416 224 KKRGIKIKTGAKAKKVEQT-DDGVTVTLEDGGKEETLEADYVLVAVGRRPN 273 (462)
T ss_pred HHcCCEEEeCCEEEEEEEe-CCEEEEEEEeCCeeEEEEeCEEEEeeCCccC
Confidence 4458999999999999865 44443222345 57999999999998774
No 292
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=97.43 E-value=0.00017 Score=62.44 Aligned_cols=39 Identities=18% Similarity=0.255 Sum_probs=34.9
Q ss_pred ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcC
Q 019351 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES 43 (342)
Q Consensus 5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~ 43 (342)
.-|.|||||++|.-|||+++++|..|.++|.++.-+-..
T Consensus 4 ~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~k~Tpa 42 (439)
T COG1206 4 QPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPVKGTPA 42 (439)
T ss_pred CceEEEcccccccHHHHHHHHcCCcEEEEEcccccCCCc
Confidence 479999999999999999999999999999987766443
No 293
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=97.35 E-value=0.00024 Score=65.72 Aligned_cols=56 Identities=20% Similarity=0.108 Sum_probs=42.5
Q ss_pred hHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCcEEEcCEEEECCCCCCc
Q 019351 233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPN 290 (342)
Q Consensus 233 ~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~~~~~ 290 (342)
.+...+.+.+++.|+++++++.|+++.. ++.+.....+|+++.||.||+++|..|+
T Consensus 187 ~~~~~l~~~l~~~GV~i~~~~~V~~i~~--~~~~~v~l~~g~~i~aD~Vv~a~G~~pn 242 (396)
T PRK09754 187 PVQRYLLQRHQQAGVRILLNNAIEHVVD--GEKVELTLQSGETLQADVVIYGIGISAN 242 (396)
T ss_pred HHHHHHHHHHHHCCCEEEeCCeeEEEEc--CCEEEEEECCCCEEECCEEEECCCCChh
Confidence 3445667777888999999999999964 2333323347788999999999998874
No 294
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=97.30 E-value=0.0033 Score=59.43 Aligned_cols=34 Identities=24% Similarity=0.381 Sum_probs=31.1
Q ss_pred cEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCC
Q 019351 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY 39 (342)
Q Consensus 6 DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~ 39 (342)
.++|||+|..|+-+|..|++.|.+|+++|+.+++
T Consensus 179 ~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~ 212 (466)
T PRK07845 179 HLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRV 212 (466)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcC
Confidence 6999999999999999999999999999986544
No 295
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.27 E-value=0.00026 Score=61.52 Aligned_cols=33 Identities=30% Similarity=0.333 Sum_probs=31.4
Q ss_pred CcccEEEECCCchHHHHHHhhhhCCCeEEEEcC
Q 019351 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDR 35 (342)
Q Consensus 3 ~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~ 35 (342)
.+||.||||||-+||+||.+.+..|.+|.+||-
T Consensus 18 ydyDLIviGgGSgGLacaKeAa~~G~kV~~lDf 50 (503)
T KOG4716|consen 18 YDYDLIVIGGGSGGLACAKEAADLGAKVACLDF 50 (503)
T ss_pred CCccEEEEcCCcchhhHHHHHHhcCCcEEEEee
Confidence 369999999999999999999999999999997
No 296
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=97.26 E-value=0.0003 Score=65.88 Aligned_cols=53 Identities=13% Similarity=0.085 Sum_probs=41.3
Q ss_pred hHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCcEEEcCEEEECCCCCCc
Q 019351 233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPN 290 (342)
Q Consensus 233 ~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~~~~~ 290 (342)
.+...+.+.+++.|+++++++.|++++. .. .+..+|+++.+|.||+++|..|+
T Consensus 190 ~~~~~l~~~l~~~gI~i~~~~~v~~i~~---~~--v~~~~g~~~~~D~vl~a~G~~pn 242 (438)
T PRK13512 190 DMNQPILDELDKREIPYRLNEEIDAING---NE--VTFKSGKVEHYDMIIEGVGTHPN 242 (438)
T ss_pred HHHHHHHHHHHhcCCEEEECCeEEEEeC---CE--EEECCCCEEEeCEEEECcCCCcC
Confidence 4566777888889999999999999852 22 22236778999999999998764
No 297
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=97.23 E-value=0.00042 Score=61.26 Aligned_cols=43 Identities=14% Similarity=-0.018 Sum_probs=38.3
Q ss_pred cccEEEECCCchHHHHHHhhhhC--CCeEEEEcCCCCCCCcCccc
Q 019351 4 EYDVIVLGTGLKECILSGLLSVD--GLKVLHMDRNDYYGGESSSL 46 (342)
Q Consensus 4 ~~DViIiG~GiaGl~aA~~L~~~--G~~V~vlE~~~~~GG~~~t~ 46 (342)
...|+|||+|+||+-+|+.|-++ +.+|.|+|+.+.++|..+.-
T Consensus 20 ~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLvRyG 64 (468)
T KOG1800|consen 20 TPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLVRYG 64 (468)
T ss_pred CceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccceeeec
Confidence 35899999999999999998884 58999999999999998754
No 298
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=97.20 E-value=0.0004 Score=63.10 Aligned_cols=34 Identities=29% Similarity=0.526 Sum_probs=30.7
Q ss_pred CcccEEEECCCchHHHHHHhhhhCCCeEEEEcCC
Q 019351 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRN 36 (342)
Q Consensus 3 ~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~ 36 (342)
..|||||||||++|+-||...++-|.+.+++-.+
T Consensus 27 ~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ 60 (679)
T KOG2311|consen 27 STYDVVVIGGGHAGCEAAAAAARLGARTLLLTHN 60 (679)
T ss_pred CcccEEEECCCccchHHHHHHHhcCCceEEeecc
Confidence 4689999999999999999999999988888664
No 299
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=97.19 E-value=0.00043 Score=64.60 Aligned_cols=53 Identities=19% Similarity=0.029 Sum_probs=41.4
Q ss_pred hHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCcEEEcCEEEECCCCCCc
Q 019351 233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPN 290 (342)
Q Consensus 233 ~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~~~~~ 290 (342)
.+...+.+.++++|++++++++|+++.. +. .+..+|+++.||.||.++|..|.
T Consensus 229 ~~~~~~~~~L~~~gV~v~~~~~v~~v~~---~~--v~~~~g~~i~~d~vi~~~G~~~~ 281 (424)
T PTZ00318 229 ALRKYGQRRLRRLGVDIRTKTAVKEVLD---KE--VVLKDGEVIPTGLVVWSTGVGPG 281 (424)
T ss_pred HHHHHHHHHHHHCCCEEEeCCeEEEEeC---CE--EEECCCCEEEccEEEEccCCCCc
Confidence 4566777888899999999999999853 22 22347889999999999987654
No 300
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=97.10 E-value=0.0005 Score=63.68 Aligned_cols=40 Identities=28% Similarity=0.337 Sum_probs=38.3
Q ss_pred ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCc
Q 019351 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS 44 (342)
Q Consensus 5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~ 44 (342)
.+++|||+|..||.+|..|+++|++|+++|+.+++||...
T Consensus 137 ~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~ 176 (415)
T COG0446 137 KDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLL 176 (415)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchhhh
Confidence 4899999999999999999999999999999999999875
No 301
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.07 E-value=0.0038 Score=56.03 Aligned_cols=36 Identities=36% Similarity=0.502 Sum_probs=33.0
Q ss_pred CCCcccEEEECCCchHHHHHHhhhhCC-CeEEEEcCC
Q 019351 1 MDEEYDVIVLGTGLKECILSGLLSVDG-LKVLHMDRN 36 (342)
Q Consensus 1 m~~~~DViIiG~GiaGl~aA~~L~~~G-~~V~vlE~~ 36 (342)
|++.+|+|.||-|++-|+.|+.|.+++ .+++.||+.
T Consensus 2 ~~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerk 38 (436)
T COG3486 2 MAEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERK 38 (436)
T ss_pred CCcceeeEEEccCchHHHHHHHhccccCcceEEEecC
Confidence 566799999999999999999999986 889999996
No 302
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.92 E-value=0.001 Score=58.20 Aligned_cols=42 Identities=21% Similarity=0.279 Sum_probs=39.3
Q ss_pred cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCcc
Q 019351 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS 45 (342)
Q Consensus 4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t 45 (342)
+||..|||||-.|+.+|.+.+..|.+|.|+|..-.+||.|-.
T Consensus 20 ~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTCVn 61 (478)
T KOG0405|consen 20 DFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCVN 61 (478)
T ss_pred ccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCceEEe
Confidence 699999999999999999999999999999999899998743
No 303
>PF07156 Prenylcys_lyase: Prenylcysteine lyase; InterPro: IPR010795 This entry represents a conserved region found in a group of prenylcysteine lyases (1.8.3.5 from EC) that are approximately 500 residues long. Prenylcysteine lyase is a FAD-dependent thioether oxidase that degrades a variety of prenylcysteines, producing free cysteine, an isoprenoid aldehyde and hydrogen peroxide as products of the reaction []. It has been noted that this enzyme has considerable homology with ClP55, a 55 kDa protein that is associated with chloride ion pumps [].; GO: 0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor, 0030328 prenylcysteine catabolic process, 0055114 oxidation-reduction process
Probab=96.88 E-value=0.0036 Score=56.74 Aligned_cols=112 Identities=18% Similarity=0.196 Sum_probs=69.8
Q ss_pred CCCcHHHHHHHcCCChhHHHHHHhhhhcccCCCCCCCchHHHHHHHHHHHHhhccccC-CCceEEeCCCCChHHHHHHHH
Q 019351 163 TRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQG-GSPYIYPLYGLGELPQAFARL 241 (342)
Q Consensus 163 ~~~s~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~gG~~~l~~~l~~~ 241 (342)
...|..+||++.|+++.+.+.+..... ..+|.......++..+..+ .| ....+-++||..++++.|.+.
T Consensus 68 t~~t~~e~L~~~gi~~~fi~Elv~a~t---RvNYgQ~~~i~a~~G~vSl-------a~a~~gl~sV~GGN~qI~~~ll~~ 137 (368)
T PF07156_consen 68 TKVTGEEYLKENGISERFINELVQAAT---RVNYGQNVNIHAFAGLVSL-------AGATGGLWSVEGGNWQIFEGLLEA 137 (368)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHhhe---Eeecccccchhhhhhheee-------eeccCCceEecCCHHHHHHHHHHH
Confidence 467889999999999988865543332 2334332222222222111 12 344567899999999999985
Q ss_pred HHHcCcEEEcCCccceE-EEcCCCc-EEEEEe---CCc-EEEcCEEEECCCCC
Q 019351 242 SAVYGGTYMLNKPECKV-EFDEEGK-VVGVTS---EGE-TAKCKKVVCDPSYL 288 (342)
Q Consensus 242 ~~~~G~~i~~~~~V~~i-~~~~~~~-~~~v~~---~g~-~~~a~~vI~~~~~~ 288 (342)
. |+++ ++++|++| ...+++. ...|+. .+. .-..|.||+|+++.
T Consensus 138 S---~A~v-l~~~Vt~I~~~~~~~~~~y~v~~~~~~~~~~~~yD~VVIAtPl~ 186 (368)
T PF07156_consen 138 S---GANV-LNTTVTSITRRSSDGYSLYEVTYKSSSGTESDEYDIVVIATPLQ 186 (368)
T ss_pred c---cCcE-ecceeEEEEeccCCCceeEEEEEecCCCCccccCCEEEECCCcc
Confidence 4 8999 99999999 4432332 223333 222 23469999999874
No 304
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=96.88 E-value=0.0013 Score=60.45 Aligned_cols=56 Identities=16% Similarity=0.232 Sum_probs=44.1
Q ss_pred hHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCcEEEcCEEEECCCCCCc
Q 019351 233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLPN 290 (342)
Q Consensus 233 ~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~-~g~~~~a~~vI~~~~~~~~ 290 (342)
.+...+.+.+++.|++++++++|+++..+ ++. +.+.+ +|.++.||.||+|+|..|+
T Consensus 184 ~~~~~l~~~l~~~gV~i~~~~~v~~i~~~-~~~-~~v~~~~g~~i~~D~vI~a~G~~p~ 240 (377)
T PRK04965 184 EVSSRLQHRLTEMGVHLLLKSQLQGLEKT-DSG-IRATLDSGRSIEVDAVIAAAGLRPN 240 (377)
T ss_pred HHHHHHHHHHHhCCCEEEECCeEEEEEcc-CCE-EEEEEcCCcEEECCEEEECcCCCcc
Confidence 35566777788889999999999999865 443 34444 7789999999999998764
No 305
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=96.74 E-value=0.0017 Score=59.29 Aligned_cols=52 Identities=15% Similarity=0.171 Sum_probs=40.8
Q ss_pred hHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCcEEEcCEEEECCCCCCc
Q 019351 233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLPN 290 (342)
Q Consensus 233 ~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~-~g~~~~a~~vI~~~~~~~~ 290 (342)
.+...+.+.++++|+++++++.|+++. ++ .+.+ +|.++.+|.||+|+|..|.
T Consensus 192 ~~~~~~~~~l~~~gV~v~~~~~v~~i~---~~---~v~~~~g~~i~~D~vi~a~G~~p~ 244 (364)
T TIGR03169 192 KVRRLVLRLLARRGIEVHEGAPVTRGP---DG---ALILADGRTLPADAILWATGARAP 244 (364)
T ss_pred HHHHHHHHHHHHCCCEEEeCCeeEEEc---CC---eEEeCCCCEEecCEEEEccCCChh
Confidence 455667778888999999999999884 22 2333 7789999999999997764
No 306
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=96.65 E-value=0.0021 Score=51.14 Aligned_cols=32 Identities=28% Similarity=0.449 Sum_probs=30.1
Q ss_pred cEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (342)
Q Consensus 6 DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~ 37 (342)
+|+|||||..|.++|..|+++|++|.++.++.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 48999999999999999999999999998864
No 307
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=96.64 E-value=0.0025 Score=58.15 Aligned_cols=54 Identities=26% Similarity=0.292 Sum_probs=41.0
Q ss_pred ChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCc-EEEcCEEEECCCCCCcc
Q 019351 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGE-TAKCKKVVCDPSYLPNK 291 (342)
Q Consensus 232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~-~g~-~~~a~~vI~~~~~~~~~ 291 (342)
.++.....+.++++|++|+++++|++|+.+ + |++ +|+ +|.|+.||-|+|..+..
T Consensus 209 ~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~~--~----v~~~~g~~~I~~~tvvWaaGv~a~~ 264 (405)
T COG1252 209 PKLSKYAERALEKLGVEVLLGTPVTEVTPD--G----VTLKDGEEEIPADTVVWAAGVRASP 264 (405)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCceEEECCC--c----EEEccCCeeEecCEEEEcCCCcCCh
Confidence 355566667778899999999999999643 2 333 455 59999999999987543
No 308
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=96.64 E-value=0.0022 Score=57.45 Aligned_cols=40 Identities=30% Similarity=0.439 Sum_probs=33.3
Q ss_pred cccEEEECCCchHHHHHHhhhhCC----CeEEEEcCC--CCCCCcC
Q 019351 4 EYDVIVLGTGLKECILSGLLSVDG----LKVLHMDRN--DYYGGES 43 (342)
Q Consensus 4 ~~DViIiG~GiaGl~aA~~L~~~G----~~V~vlE~~--~~~GG~~ 43 (342)
+|||+|+|||+.|++.|..|...- ++|+++|.. +..++.-
T Consensus 36 ~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s~kl~~~~ 81 (481)
T KOG3855|consen 36 KYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDSPKLGDFK 81 (481)
T ss_pred cCCEEEECCchHHHHHHHHhccCCccchheeeEEecccCccccccc
Confidence 699999999999999999999653 699999998 4445433
No 309
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=96.55 E-value=0.0027 Score=51.87 Aligned_cols=32 Identities=25% Similarity=0.441 Sum_probs=26.8
Q ss_pred cEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (342)
Q Consensus 6 DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~ 37 (342)
.|+|||.|..||.+|..|+++|++|+.+|.++
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~ 33 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEKGHQVIGVDIDE 33 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHTTSEEEEE-S-H
T ss_pred EEEEECCCcchHHHHHHHHhCCCEEEEEeCCh
Confidence 69999999999999999999999999999974
No 310
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=96.36 E-value=0.0044 Score=62.56 Aligned_cols=58 Identities=10% Similarity=0.055 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCcEEEcCEEEECCCCCCcc
Q 019351 234 LPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLPNK 291 (342)
Q Consensus 234 l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~-~g~~~~a~~vI~~~~~~~~~ 291 (342)
....+.+.++++|+++++++.|++|..++++....+.. +|.++.+|.||+++|..|+.
T Consensus 189 ~~~~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D~Vv~A~G~rPn~ 247 (847)
T PRK14989 189 GGEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFIVFSTGIRPQD 247 (847)
T ss_pred HHHHHHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEECCCCEEEcCEEEECCCcccCc
Confidence 34566777888999999999999997542233444554 78899999999999988753
No 311
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=96.34 E-value=0.0042 Score=57.42 Aligned_cols=39 Identities=18% Similarity=0.191 Sum_probs=35.2
Q ss_pred ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcC
Q 019351 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES 43 (342)
Q Consensus 5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~ 43 (342)
-+|+|||+|..|+-+|..|++.|.+|+|+|+.+++.++.
T Consensus 145 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~ 183 (396)
T PRK09754 145 RSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGRN 183 (396)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchhhh
Confidence 369999999999999999999999999999998876543
No 312
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=96.34 E-value=0.0046 Score=50.32 Aligned_cols=31 Identities=29% Similarity=0.433 Sum_probs=27.5
Q ss_pred cEEEECCCchHHHHHHhhhhCCCeEEEEcCC
Q 019351 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRN 36 (342)
Q Consensus 6 DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~ 36 (342)
.|.|||+|..|...|..++.+|++|+++|.+
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~ 31 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRS 31 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SS
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 4899999999999999999999999999995
No 313
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=96.28 E-value=0.0032 Score=51.74 Aligned_cols=46 Identities=20% Similarity=0.291 Sum_probs=37.9
Q ss_pred CCcccEEEECCCchHHHHHHhhhhCCCeEEEEcC---CC-CCCCcCcccc
Q 019351 2 DEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDR---ND-YYGGESSSLN 47 (342)
Q Consensus 2 ~~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~---~~-~~GG~~~t~~ 47 (342)
.....|+|||+|+++-+||.+++++-.+-+++|. ++ -+||...|-+
T Consensus 6 ~h~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtTTT 55 (322)
T KOG0404|consen 6 THNENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTTTT 55 (322)
T ss_pred eeeeeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeeeee
Confidence 3445899999999999999999999999999997 33 3577776654
No 314
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.28 E-value=0.0046 Score=58.40 Aligned_cols=34 Identities=32% Similarity=0.366 Sum_probs=31.7
Q ss_pred cEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCC
Q 019351 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY 39 (342)
Q Consensus 6 DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~ 39 (342)
.|.|||.|.+|+++|..|.++|++|+++|++...
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~ 35 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSP 35 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCch
Confidence 5899999999999999999999999999998764
No 315
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=96.21 E-value=0.0064 Score=47.88 Aligned_cols=30 Identities=20% Similarity=0.448 Sum_probs=28.4
Q ss_pred EEEECCCchHHHHHHhhhhCCCeEEEEcCC
Q 019351 7 VIVLGTGLKECILSGLLSVDGLKVLHMDRN 36 (342)
Q Consensus 7 ViIiG~GiaGl~aA~~L~~~G~~V~vlE~~ 36 (342)
|+|+|+|..|+..|++|+++|++|.++-+.
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~ 30 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRS 30 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEcc
Confidence 689999999999999999999999999884
No 316
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.17 E-value=0.0056 Score=58.14 Aligned_cols=34 Identities=26% Similarity=0.306 Sum_probs=31.3
Q ss_pred ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCC
Q 019351 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY 38 (342)
Q Consensus 5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~ 38 (342)
-.|+|||+|.+|+.+|..|+++|++|+++|+++.
T Consensus 17 ~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~ 50 (480)
T PRK01438 17 LRVVVAGLGVSGFAAADALLELGARVTVVDDGDD 50 (480)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch
Confidence 3699999999999999999999999999998754
No 317
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=96.07 E-value=0.017 Score=52.64 Aligned_cols=59 Identities=15% Similarity=0.141 Sum_probs=46.1
Q ss_pred EEeCC-CCChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe--CCcEEEcCEEEECCCC
Q 019351 225 IYPLY-GLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS--EGETAKCKKVVCDPSY 287 (342)
Q Consensus 225 ~~~~g-G~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~--~g~~~~a~~vI~~~~~ 287 (342)
.||.- -...++++|.+.+++.|++|+++++|++| + +++ ..+.+ ++.+++||+||+|+|-
T Consensus 78 vfP~S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~-~~~-~~v~~~~~~~~~~a~~vIlAtGG 139 (376)
T TIGR03862 78 VFPVEMKAAPLLRAWLKRLAEQGVQFHTRHRWIGW--Q-GGT-LRFETPDGQSTIEADAVVLALGG 139 (376)
T ss_pred ECCCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEE--e-CCc-EEEEECCCceEEecCEEEEcCCC
Confidence 46633 46789999999999999999999999999 3 333 45665 3357999999998863
No 318
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=96.04 E-value=0.0083 Score=56.28 Aligned_cols=38 Identities=21% Similarity=0.158 Sum_probs=34.3
Q ss_pred ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCc
Q 019351 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGE 42 (342)
Q Consensus 5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~ 42 (342)
-+|+|||||..|+.+|..|++.|.+|+++|+.+++.+.
T Consensus 158 ~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~ 195 (438)
T PRK07251 158 ERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILPR 195 (438)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCCC
Confidence 36999999999999999999999999999998876544
No 319
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.97 E-value=0.0046 Score=54.24 Aligned_cols=38 Identities=24% Similarity=0.466 Sum_probs=31.6
Q ss_pred cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcC
Q 019351 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES 43 (342)
Q Consensus 4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~ 43 (342)
.|||+|||||++|-+||.+.++.|.+.=++ ..+.||..
T Consensus 211 ~yDVLvVGgGPAgaaAAiYaARKGiRTGl~--aerfGGQv 248 (520)
T COG3634 211 AYDVLVVGGGPAGAAAAIYAARKGIRTGLV--AERFGGQV 248 (520)
T ss_pred CceEEEEcCCcchhHHHHHHHhhcchhhhh--hhhhCCee
Confidence 499999999999999999999999876554 23577754
No 320
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=95.97 E-value=0.0079 Score=57.00 Aligned_cols=36 Identities=17% Similarity=0.253 Sum_probs=33.1
Q ss_pred ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCC
Q 019351 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYG 40 (342)
Q Consensus 5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~G 40 (342)
-+|+|||||.+|+-+|..|++.|.+|+++|+++++.
T Consensus 181 ~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il 216 (472)
T PRK05976 181 KSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRIL 216 (472)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccC
Confidence 379999999999999999999999999999987754
No 321
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.95 E-value=0.01 Score=52.39 Aligned_cols=37 Identities=24% Similarity=0.226 Sum_probs=32.8
Q ss_pred CCCcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (342)
Q Consensus 1 m~~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~ 37 (342)
|.....|+|||+|..|...|..|+++|++|+++|.++
T Consensus 1 ~~~~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~ 37 (292)
T PRK07530 1 MMAIKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSA 37 (292)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 4444679999999999999999999999999999863
No 322
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=95.92 E-value=0.0077 Score=53.62 Aligned_cols=32 Identities=22% Similarity=0.306 Sum_probs=30.5
Q ss_pred cEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (342)
Q Consensus 6 DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~ 37 (342)
+|.|||+|..|.+.|..|+++|++|+++|+++
T Consensus 4 ~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~ 35 (308)
T PRK06129 4 SVAIIGAGLIGRAWAIVFARAGHEVRLWDADP 35 (308)
T ss_pred EEEEECccHHHHHHHHHHHHCCCeeEEEeCCH
Confidence 69999999999999999999999999999874
No 323
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=95.84 E-value=0.012 Score=52.54 Aligned_cols=34 Identities=24% Similarity=0.371 Sum_probs=31.2
Q ss_pred cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (342)
Q Consensus 4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~ 37 (342)
...|+|||+|..|...|+.|+++|++|+++.++.
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 3589999999999999999999999999998854
No 324
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=95.75 E-value=0.011 Score=55.83 Aligned_cols=37 Identities=22% Similarity=0.201 Sum_probs=33.6
Q ss_pred ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCC
Q 019351 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG 41 (342)
Q Consensus 5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG 41 (342)
-+|+|||+|..|+-+|..|++.|.+|+++|+.+++..
T Consensus 167 ~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~ 203 (463)
T TIGR02053 167 ESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLP 203 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCC
Confidence 4799999999999999999999999999999877643
No 325
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.75 E-value=0.012 Score=51.73 Aligned_cols=34 Identities=21% Similarity=0.288 Sum_probs=31.2
Q ss_pred ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCC
Q 019351 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY 38 (342)
Q Consensus 5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~ 38 (342)
..|+|||+|..|...|..|+.+|++|+++|.++.
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~ 39 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEE 39 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHH
Confidence 4799999999999999999999999999998643
No 326
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=95.73 E-value=0.0099 Score=59.86 Aligned_cols=54 Identities=19% Similarity=0.226 Sum_probs=43.1
Q ss_pred HHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCcEEEcCEEEECCCCCCc
Q 019351 235 PQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLPN 290 (342)
Q Consensus 235 ~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~-~g~~~~a~~vI~~~~~~~~ 290 (342)
...+.+.++++|+++++++.|++|..+ +++..|+. +|+++.+|.||+++|..|+
T Consensus 185 ~~~l~~~l~~~GV~v~~~~~v~~i~~~--~~~~~v~~~dG~~i~~D~Vi~a~G~~Pn 239 (785)
T TIGR02374 185 GRLLQRELEQKGLTFLLEKDTVEIVGA--TKADRIRFKDGSSLEADLIVMAAGIRPN 239 (785)
T ss_pred HHHHHHHHHHcCCEEEeCCceEEEEcC--CceEEEEECCCCEEEcCEEEECCCCCcC
Confidence 445667778889999999999999754 44555655 7889999999999998874
No 327
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=95.70 E-value=0.012 Score=50.57 Aligned_cols=33 Identities=15% Similarity=0.045 Sum_probs=27.3
Q ss_pred cccEEEECCCchHHHHHHhhhhCC-------CeEEEEcCC
Q 019351 4 EYDVIVLGTGLKECILSGLLSVDG-------LKVLHMDRN 36 (342)
Q Consensus 4 ~~DViIiG~GiaGl~aA~~L~~~G-------~~V~vlE~~ 36 (342)
..+|+|||+|+.||++|..+.+.+ .+|+|++-+
T Consensus 3 ~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Dr 42 (342)
T KOG3923|consen 3 TPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDR 42 (342)
T ss_pred CccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCC
Confidence 368999999999999998888744 578888664
No 328
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=95.67 E-value=0.013 Score=55.15 Aligned_cols=36 Identities=22% Similarity=0.270 Sum_probs=33.3
Q ss_pred ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCC
Q 019351 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYG 40 (342)
Q Consensus 5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~G 40 (342)
-+|+|||||..|+-.|..|++.|.+|+++|+.+++.
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il 202 (450)
T TIGR01421 167 KRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVL 202 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCC
Confidence 379999999999999999999999999999988765
No 329
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=95.65 E-value=0.013 Score=55.41 Aligned_cols=37 Identities=16% Similarity=0.113 Sum_probs=33.8
Q ss_pred ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCC
Q 019351 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG 41 (342)
Q Consensus 5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG 41 (342)
-+++|||||..|+-+|..|++.|.+|+++|+.+++..
T Consensus 175 ~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il~ 211 (471)
T PRK06467 175 KRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVIP 211 (471)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCC
Confidence 3799999999999999999999999999999887654
No 330
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=95.62 E-value=0.015 Score=54.39 Aligned_cols=36 Identities=19% Similarity=0.309 Sum_probs=33.4
Q ss_pred cEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCC
Q 019351 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG 41 (342)
Q Consensus 6 DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG 41 (342)
.++|||||..|+=.|..+++.|.+|+|+|+.+++-.
T Consensus 175 ~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp 210 (454)
T COG1249 175 SLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILP 210 (454)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCC
Confidence 599999999999999999999999999999877655
No 331
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=95.62 E-value=0.015 Score=54.99 Aligned_cols=37 Identities=19% Similarity=0.296 Sum_probs=33.4
Q ss_pred ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCC
Q 019351 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG 41 (342)
Q Consensus 5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG 41 (342)
-+++|||||..|+-+|..|++.|.+|+++|+.+++..
T Consensus 171 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll~ 207 (458)
T PRK06912 171 SSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLP 207 (458)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCc
Confidence 3799999999999999999999999999999876543
No 332
>PRK07846 mycothione reductase; Reviewed
Probab=95.60 E-value=0.015 Score=54.79 Aligned_cols=36 Identities=17% Similarity=0.332 Sum_probs=33.2
Q ss_pred ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCC
Q 019351 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYG 40 (342)
Q Consensus 5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~G 40 (342)
-+++|||||..|+-+|..|++.|.+|+++|+.+++.
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll 202 (451)
T PRK07846 167 ESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLL 202 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccc
Confidence 479999999999999999999999999999987664
No 333
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=95.58 E-value=0.015 Score=54.95 Aligned_cols=37 Identities=19% Similarity=0.206 Sum_probs=33.5
Q ss_pred ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCC
Q 019351 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG 41 (342)
Q Consensus 5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG 41 (342)
-.|+|||+|..|+-.|..|++.|.+|+++|+.+++..
T Consensus 175 ~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il~ 211 (466)
T PRK06115 175 KHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRICP 211 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCCC
Confidence 3699999999999999999999999999999877643
No 334
>PRK06370 mercuric reductase; Validated
Probab=95.57 E-value=0.016 Score=54.73 Aligned_cols=38 Identities=13% Similarity=0.192 Sum_probs=34.4
Q ss_pred ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCc
Q 019351 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGE 42 (342)
Q Consensus 5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~ 42 (342)
-+|+|||+|..|+-+|..|++.|.+|+++|+.+++...
T Consensus 172 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~ 209 (463)
T PRK06370 172 EHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLPR 209 (463)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCcc
Confidence 37999999999999999999999999999998876543
No 335
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=95.55 E-value=0.0082 Score=50.66 Aligned_cols=50 Identities=16% Similarity=0.261 Sum_probs=35.5
Q ss_pred EEEECCCchHHHHHHhhhhC--CCeEEEEcCCCCCCCcCcccchHHHHHhcc
Q 019351 7 VIVLGTGLKECILSGLLSVD--GLKVLHMDRNDYYGGESSSLNLIQLWKRFR 56 (342)
Q Consensus 7 ViIiG~GiaGl~aA~~L~~~--G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~ 56 (342)
.+|||||++|.+||-+|+.. ..+|+++-+.+.+-.-.....+......|.
T Consensus 2 fivvgggiagvscaeqla~~~psa~illitass~vksvtn~~~i~~ylekfd 53 (334)
T KOG2755|consen 2 FIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFVKSVTNYQKIGQYLEKFD 53 (334)
T ss_pred eEEEcCccccccHHHHHHhhCCCCcEEEEeccHHHHHHhhHHHHHHHHHhcC
Confidence 68999999999999999964 579999988766544443333333333443
No 336
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=95.55 E-value=0.015 Score=49.18 Aligned_cols=32 Identities=28% Similarity=0.525 Sum_probs=30.3
Q ss_pred cEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (342)
Q Consensus 6 DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~ 37 (342)
+++|||+|-.|.+.|..|++.|++|+++|+.+
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~ 33 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRDE 33 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhCCCceEEEEcCH
Confidence 69999999999999999999999999999963
No 337
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.48 E-value=0.018 Score=51.34 Aligned_cols=37 Identities=22% Similarity=0.431 Sum_probs=33.1
Q ss_pred CCCcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (342)
Q Consensus 1 m~~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~ 37 (342)
|.....|.|||+|..|...|..|+++|++|+++|.+.
T Consensus 1 ~~~~~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~ 37 (311)
T PRK06130 1 MNPIQNLAIIGAGTMGSGIAALFARKGLQVVLIDVME 37 (311)
T ss_pred CCCccEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 6655679999999999999999999999999999754
No 338
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=95.48 E-value=0.016 Score=54.39 Aligned_cols=37 Identities=22% Similarity=0.229 Sum_probs=33.6
Q ss_pred ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCC
Q 019351 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG 41 (342)
Q Consensus 5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG 41 (342)
-+|+|||||..|+-+|..|++.|.+|+++|+.+++..
T Consensus 149 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~ 185 (438)
T PRK13512 149 DKALVVGAGYISLEVLENLYERGLHPTLIHRSDKINK 185 (438)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccch
Confidence 3799999999999999999999999999999877653
No 339
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.47 E-value=0.018 Score=50.67 Aligned_cols=33 Identities=24% Similarity=0.306 Sum_probs=30.6
Q ss_pred ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (342)
Q Consensus 5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~ 37 (342)
..|+|||+|..|...|..|+++|++|+++|.++
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISD 36 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 479999999999999999999999999999864
No 340
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=95.44 E-value=0.018 Score=54.57 Aligned_cols=36 Identities=17% Similarity=0.153 Sum_probs=32.8
Q ss_pred cEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCC
Q 019351 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG 41 (342)
Q Consensus 6 DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG 41 (342)
+|+|||+|..|+-+|..|++.|.+|+++|+.+++..
T Consensus 174 ~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~ 209 (466)
T PRK07818 174 SIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALP 209 (466)
T ss_pred eEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcCC
Confidence 799999999999999999999999999999876543
No 341
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=95.44 E-value=0.018 Score=53.88 Aligned_cols=35 Identities=20% Similarity=0.335 Sum_probs=32.6
Q ss_pred ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCC
Q 019351 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY 39 (342)
Q Consensus 5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~ 39 (342)
-+|+|||||.+|+-+|..|++.|.+|+++++.+.+
T Consensus 138 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~ 172 (427)
T TIGR03385 138 ENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERI 172 (427)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCccc
Confidence 37999999999999999999999999999998776
No 342
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.43 E-value=0.02 Score=50.94 Aligned_cols=33 Identities=18% Similarity=0.208 Sum_probs=30.7
Q ss_pred ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (342)
Q Consensus 5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~ 37 (342)
..|+|||+|..|...|..++.+|++|+++|..+
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~ 40 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAP 40 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 469999999999999999999999999999864
No 343
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=95.43 E-value=0.021 Score=51.28 Aligned_cols=36 Identities=31% Similarity=0.342 Sum_probs=32.7
Q ss_pred CCCcccEEEECCCchHHHHHHhhhhCCCeEEEEcCC
Q 019351 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRN 36 (342)
Q Consensus 1 m~~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~ 36 (342)
|.....|.|||+|.-|...|..|+++|++|+++++.
T Consensus 1 ~~~~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~ 36 (328)
T PRK14618 1 MHHGMRVAVLGAGAWGTALAVLAASKGVPVRLWARR 36 (328)
T ss_pred CCCCCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 555568999999999999999999999999999885
No 344
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=95.43 E-value=0.017 Score=53.58 Aligned_cols=36 Identities=19% Similarity=0.218 Sum_probs=32.4
Q ss_pred CCCcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (342)
Q Consensus 1 m~~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~ 37 (342)
|.. ..|.|||.|..|+..|..|+++|++|+++|.++
T Consensus 1 m~~-~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~ 36 (415)
T PRK11064 1 MSF-ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQ 36 (415)
T ss_pred CCc-cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCH
Confidence 553 579999999999999999999999999999854
No 345
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=95.42 E-value=0.019 Score=54.17 Aligned_cols=37 Identities=30% Similarity=0.291 Sum_probs=34.0
Q ss_pred ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCC
Q 019351 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG 41 (342)
Q Consensus 5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG 41 (342)
-+|+|||+|..|+-.|..|++.|.+|+++|+.+++..
T Consensus 170 k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~ 206 (460)
T PRK06292 170 KSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILP 206 (460)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCc
Confidence 3799999999999999999999999999999887654
No 346
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.39 E-value=0.016 Score=51.13 Aligned_cols=32 Identities=19% Similarity=0.402 Sum_probs=30.1
Q ss_pred cEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (342)
Q Consensus 6 DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~ 37 (342)
.|+|||+|..|...|..|+++|++|+++|.++
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~ 34 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQ 34 (288)
T ss_pred EEEEECccHHHHHHHHHHHhCCCcEEEEeCCH
Confidence 59999999999999999999999999999864
No 347
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=95.37 E-value=0.02 Score=50.59 Aligned_cols=37 Identities=27% Similarity=0.354 Sum_probs=33.0
Q ss_pred CCCcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (342)
Q Consensus 1 m~~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~ 37 (342)
|...-.|.|||+|..|...|..|+.+|++|+++|.++
T Consensus 1 ~~~~~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~ 37 (295)
T PLN02545 1 MAEIKKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDP 37 (295)
T ss_pred CCCcCEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 5554579999999999999999999999999999864
No 348
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=95.30 E-value=0.021 Score=51.58 Aligned_cols=31 Identities=35% Similarity=0.597 Sum_probs=29.7
Q ss_pred cEEEECCCchHHHHHHhhhhCCCeEEEEcCC
Q 019351 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRN 36 (342)
Q Consensus 6 DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~ 36 (342)
+|+|||+|..|...|..|+++|++|+++++.
T Consensus 4 kI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~ 34 (341)
T PRK08229 4 RICVLGAGSIGCYLGGRLAAAGADVTLIGRA 34 (341)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCcEEEEecH
Confidence 6999999999999999999999999999985
No 349
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=95.20 E-value=0.024 Score=53.81 Aligned_cols=37 Identities=16% Similarity=0.187 Sum_probs=33.6
Q ss_pred ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCC
Q 019351 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG 41 (342)
Q Consensus 5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG 41 (342)
-.|+|||+|..|+-+|..|++.|.+|+++|+++.+..
T Consensus 184 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~ 220 (475)
T PRK06327 184 KKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLA 220 (475)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCC
Confidence 3799999999999999999999999999999887643
No 350
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=95.17 E-value=0.027 Score=45.27 Aligned_cols=32 Identities=22% Similarity=0.162 Sum_probs=28.8
Q ss_pred ccEEEECCCchHHHHHHhhhhCCCeEEEEcCC
Q 019351 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRN 36 (342)
Q Consensus 5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~ 36 (342)
..|+|+|+|.+|..||..|...|.+|+++|.+
T Consensus 21 ~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~ 52 (168)
T PF01262_consen 21 AKVVVTGAGRVGQGAAEIAKGLGAEVVVPDER 52 (168)
T ss_dssp -EEEEESTSHHHHHHHHHHHHTT-EEEEEESS
T ss_pred eEEEEECCCHHHHHHHHHHhHCCCEEEeccCC
Confidence 57999999999999999999999999999984
No 351
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=95.16 E-value=0.024 Score=53.36 Aligned_cols=37 Identities=16% Similarity=0.263 Sum_probs=33.5
Q ss_pred ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCC
Q 019351 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG 41 (342)
Q Consensus 5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG 41 (342)
-.++|||||..|+-.|..|++.|.+|+++|+.+++..
T Consensus 170 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll~ 206 (452)
T TIGR03452 170 ESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLR 206 (452)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcccc
Confidence 3799999999999999999999999999999877643
No 352
>PRK04148 hypothetical protein; Provisional
Probab=95.12 E-value=0.021 Score=43.61 Aligned_cols=33 Identities=24% Similarity=0.358 Sum_probs=30.0
Q ss_pred ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCC
Q 019351 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY 38 (342)
Q Consensus 5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~ 38 (342)
..+++||.| .|...|..|++.|++|+.+|-++.
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~ 50 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINEK 50 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence 469999999 999999999999999999998765
No 353
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=95.09 E-value=0.026 Score=50.10 Aligned_cols=31 Identities=23% Similarity=0.400 Sum_probs=29.3
Q ss_pred cEEEECCCchHHHHHHhhhhCCCeEEEEcCC
Q 019351 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRN 36 (342)
Q Consensus 6 DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~ 36 (342)
+|+|||+|..|...|..|+++|++|++++++
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~ 32 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGHDVTLVARR 32 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence 5999999999999999999999999999984
No 354
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=95.07 E-value=0.028 Score=49.99 Aligned_cols=32 Identities=25% Similarity=0.288 Sum_probs=30.3
Q ss_pred ccEEEECCCchHHHHHHhhhhCCCeEEEEcCC
Q 019351 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRN 36 (342)
Q Consensus 5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~ 36 (342)
.+|+|||+|-.|...|++|+++|.+|+++.+.
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~ 34 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRD 34 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEec
Confidence 47999999999999999999999999999985
No 355
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=94.99 E-value=0.027 Score=56.82 Aligned_cols=36 Identities=19% Similarity=0.070 Sum_probs=33.0
Q ss_pred ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCC
Q 019351 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYG 40 (342)
Q Consensus 5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~G 40 (342)
-+|+|||||..|+-+|..|++.|.+|+|+|+.+.+-
T Consensus 141 k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll 176 (785)
T TIGR02374 141 KKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLM 176 (785)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCchh
Confidence 369999999999999999999999999999988764
No 356
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.99 E-value=0.028 Score=52.91 Aligned_cols=33 Identities=30% Similarity=0.483 Sum_probs=31.2
Q ss_pred ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (342)
Q Consensus 5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~ 37 (342)
..|+|+|+|..|+.+|..|+++|++|+++|+..
T Consensus 6 k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 6 KKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 579999999999999999999999999999974
No 357
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=94.97 E-value=0.028 Score=50.55 Aligned_cols=32 Identities=25% Similarity=0.417 Sum_probs=30.0
Q ss_pred cEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (342)
Q Consensus 6 DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~ 37 (342)
+|.|||+|..||++|.-|++.|++|+.+|...
T Consensus 2 kI~viGtGYVGLv~g~~lA~~GHeVv~vDid~ 33 (414)
T COG1004 2 KITVIGTGYVGLVTGACLAELGHEVVCVDIDE 33 (414)
T ss_pred ceEEECCchHHHHHHHHHHHcCCeEEEEeCCH
Confidence 69999999999999999999999999999853
No 358
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=94.94 E-value=0.029 Score=49.83 Aligned_cols=30 Identities=27% Similarity=0.365 Sum_probs=28.8
Q ss_pred cEEEECCCchHHHHHHhhhhCCCeEEEEcC
Q 019351 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDR 35 (342)
Q Consensus 6 DViIiG~GiaGl~aA~~L~~~G~~V~vlE~ 35 (342)
+|+|||+|..|...|..|+++|++|+++.+
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence 599999999999999999999999999987
No 359
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=94.91 E-value=0.029 Score=53.78 Aligned_cols=35 Identities=23% Similarity=0.046 Sum_probs=32.1
Q ss_pred ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCC
Q 019351 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY 39 (342)
Q Consensus 5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~ 39 (342)
-+|+|||||..|+-+|..|+..|.+|+++|+.+.+
T Consensus 353 k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l 387 (515)
T TIGR03140 353 KDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADEL 387 (515)
T ss_pred CEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcC
Confidence 37999999999999999999999999999987655
No 360
>PRK06116 glutathione reductase; Validated
Probab=94.89 E-value=0.098 Score=49.28 Aligned_cols=58 Identities=17% Similarity=0.177 Sum_probs=44.8
Q ss_pred hHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCcEEEcCEEEECCCCCCc
Q 019351 233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPN 290 (342)
Q Consensus 233 ~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~~~~~ 290 (342)
.+...+.+.+++.|+++++++.|++|+.++++.+.....+|.++.||.||+|+|..|+
T Consensus 209 ~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~g~~~v~~~~g~~i~~D~Vv~a~G~~p~ 266 (450)
T PRK06116 209 DIRETLVEEMEKKGIRLHTNAVPKAVEKNADGSLTLTLEDGETLTVDCLIWAIGREPN 266 (450)
T ss_pred HHHHHHHHHHHHCCcEEECCCEEEEEEEcCCceEEEEEcCCcEEEeCEEEEeeCCCcC
Confidence 5666777888889999999999999987523333333337788999999999988764
No 361
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=94.88 E-value=0.087 Score=51.10 Aligned_cols=54 Identities=15% Similarity=0.224 Sum_probs=45.2
Q ss_pred ChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe----CCc--EEEcCEEEECCC
Q 019351 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EGE--TAKCKKVVCDPS 286 (342)
Q Consensus 232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~----~g~--~~~a~~vI~~~~ 286 (342)
..+...|.+.+++.|++|+.++.|++|..+ +|++.++.. +|. .+.|+.||+|+|
T Consensus 119 ~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~-~g~v~Ga~~~~~~~g~~~~i~AkaVILATG 178 (565)
T TIGR01816 119 HAILHTLYQQNLKADTSFFNEYFALDLLME-DGECRGVIAYCLETGEIHRFRAKAVVLATG 178 (565)
T ss_pred HHHHHHHHHHHHhCCCEEEeccEEEEEEee-CCEEEEEEEEEcCCCcEEEEEeCeEEECCC
Confidence 468889999898899999999999999876 788888764 343 578999999876
No 362
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=94.87 E-value=0.035 Score=49.39 Aligned_cols=32 Identities=22% Similarity=0.373 Sum_probs=29.6
Q ss_pred cEEEECCCchHHHHHHhhhhCC--CeEEEEcCCC
Q 019351 6 DVIVLGTGLKECILSGLLSVDG--LKVLHMDRND 37 (342)
Q Consensus 6 DViIiG~GiaGl~aA~~L~~~G--~~V~vlE~~~ 37 (342)
+|.|||+|..|.++|+.|+.+| .+|.++|.+.
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~ 35 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINK 35 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCc
Confidence 6999999999999999999999 5899999864
No 363
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=94.85 E-value=0.033 Score=54.71 Aligned_cols=36 Identities=11% Similarity=0.134 Sum_probs=33.6
Q ss_pred cEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCC
Q 019351 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG 41 (342)
Q Consensus 6 DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG 41 (342)
+|+|||||..|+-.|..|++.|.+|+++|+.+++..
T Consensus 314 ~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll~ 349 (659)
T PTZ00153 314 YMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLLP 349 (659)
T ss_pred ceEEECCCHHHHHHHHHHHhCCCeEEEEeccCcccc
Confidence 699999999999999999999999999999988664
No 364
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.85 E-value=0.032 Score=48.98 Aligned_cols=33 Identities=24% Similarity=0.360 Sum_probs=30.5
Q ss_pred ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (342)
Q Consensus 5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~ 37 (342)
.+|+|||+|..|...|..|+++|++|+++|.++
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~ 36 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISD 36 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCH
Confidence 369999999999999999999999999999754
No 365
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=94.84 E-value=0.029 Score=49.47 Aligned_cols=33 Identities=18% Similarity=0.273 Sum_probs=30.6
Q ss_pred ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (342)
Q Consensus 5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~ 37 (342)
..|.|||+|..|...|..|+++|++|+++|.++
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSE 36 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 369999999999999999999999999999864
No 366
>PTZ00058 glutathione reductase; Provisional
Probab=94.76 E-value=0.033 Score=53.73 Aligned_cols=36 Identities=14% Similarity=0.140 Sum_probs=33.2
Q ss_pred ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCC
Q 019351 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYG 40 (342)
Q Consensus 5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~G 40 (342)
-+|+|||||..|+-.|..|++.|.+|+++|+++++.
T Consensus 238 k~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il 273 (561)
T PTZ00058 238 KRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLL 273 (561)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCcEEEEEeccccc
Confidence 369999999999999999999999999999988764
No 367
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=94.75 E-value=0.036 Score=45.75 Aligned_cols=38 Identities=26% Similarity=0.394 Sum_probs=33.4
Q ss_pred CCCcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCC
Q 019351 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY 38 (342)
Q Consensus 1 m~~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~ 38 (342)
|.....|.|||+|..|...|.-.+.+|+.|.++|++..
T Consensus 8 ~~~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~ 45 (298)
T KOG2304|consen 8 MAEIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANED 45 (298)
T ss_pred cccccceEEEcccccchhHHHHHHhcCCceEEecCCHH
Confidence 34456899999999999999999999999999999643
No 368
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=94.74 E-value=0.037 Score=52.04 Aligned_cols=37 Identities=14% Similarity=0.112 Sum_probs=33.1
Q ss_pred ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCC
Q 019351 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG 41 (342)
Q Consensus 5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG 41 (342)
-+|+|||||.+|+-+|..|++.|.+|+++++.+++-+
T Consensus 150 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~ 186 (444)
T PRK09564 150 KNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRILP 186 (444)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcccCc
Confidence 4799999999999999999999999999999876543
No 369
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=94.66 E-value=0.036 Score=51.51 Aligned_cols=33 Identities=27% Similarity=0.335 Sum_probs=30.6
Q ss_pred cEEEECCCchHHHHHHhhhhCCCeEEEEcCCCC
Q 019351 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY 38 (342)
Q Consensus 6 DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~ 38 (342)
+|.|||.|..|+..|..|+++|++|+++|++..
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~ 34 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQE 34 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCCeEEEEECCHH
Confidence 599999999999999999999999999998653
No 370
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=94.64 E-value=0.041 Score=52.40 Aligned_cols=37 Identities=16% Similarity=0.206 Sum_probs=32.3
Q ss_pred CCCcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (342)
Q Consensus 1 m~~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~ 37 (342)
|.....|.|||+|..|...|..|+++|++|+|+|+++
T Consensus 1 ~~~i~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~ 37 (495)
T PRK07531 1 MTMIMKAACIGGGVIGGGWAARFLLAGIDVAVFDPHP 37 (495)
T ss_pred CCCcCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 4434479999999999999999999999999999853
No 371
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=94.58 E-value=0.12 Score=50.30 Aligned_cols=55 Identities=24% Similarity=0.278 Sum_probs=45.1
Q ss_pred ChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe----CCc--EEEcCEEEECCC
Q 019351 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EGE--TAKCKKVVCDPS 286 (342)
Q Consensus 232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~----~g~--~~~a~~vI~~~~ 286 (342)
..+...|.+.+++.|++|+.++.++++..++++++.++.. +|. .+.|+.||+|+|
T Consensus 126 ~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATG 186 (570)
T PRK05675 126 HALLHTLYQGNLKNGTTFLNEWYAVDLVKNQDGAVVGVIAICIETGETVYIKSKATVLATG 186 (570)
T ss_pred HHHHHHHHHHHhccCCEEEECcEEEEEEEcCCCeEEEEEEEEcCCCcEEEEecCeEEECCC
Confidence 4688899998888899999999999998753678888864 343 478999999876
No 372
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=94.51 E-value=0.15 Score=46.88 Aligned_cols=34 Identities=9% Similarity=0.261 Sum_probs=29.7
Q ss_pred ccEEEECCCchHHHHHHhhhhCC--CeEEEEcCCCC
Q 019351 5 YDVIVLGTGLKECILSGLLSVDG--LKVLHMDRNDY 38 (342)
Q Consensus 5 ~DViIiG~GiaGl~aA~~L~~~G--~~V~vlE~~~~ 38 (342)
.||+|||||++|+.+|..|.+.+ .+|+|+++.+.
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~ 38 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSG 38 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCC
Confidence 38999999999999999998765 68999988763
No 373
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=94.45 E-value=0.054 Score=48.06 Aligned_cols=32 Identities=19% Similarity=0.251 Sum_probs=29.3
Q ss_pred ccEEEECCCchHHHHHHhhhhCCC-eEEEEcCC
Q 019351 5 YDVIVLGTGLKECILSGLLSVDGL-KVLHMDRN 36 (342)
Q Consensus 5 ~DViIiG~GiaGl~aA~~L~~~G~-~V~vlE~~ 36 (342)
.+|.|||+|..|+.+|+.|+..|+ +|+++|..
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~ 34 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVV 34 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 369999999999999999999886 89999984
No 374
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=94.42 E-value=0.046 Score=51.47 Aligned_cols=34 Identities=21% Similarity=0.138 Sum_probs=31.3
Q ss_pred ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCC
Q 019351 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY 38 (342)
Q Consensus 5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~ 38 (342)
-.|+|||||..|+-+|..|.+.|.+|+++++++.
T Consensus 273 k~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~ 306 (449)
T TIGR01316 273 KSVVVIGGGNTAVDSARTALRLGAEVHCLYRRTR 306 (449)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEeecCc
Confidence 3799999999999999999999999999998754
No 375
>PRK10262 thioredoxin reductase; Provisional
Probab=94.42 E-value=0.047 Score=48.88 Aligned_cols=35 Identities=26% Similarity=0.203 Sum_probs=32.1
Q ss_pred ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCC
Q 019351 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY 39 (342)
Q Consensus 5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~ 39 (342)
-+|+|||+|.+|+-+|..|++.|.+|+++++.+.+
T Consensus 147 ~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~ 181 (321)
T PRK10262 147 QKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGF 181 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCcc
Confidence 37999999999999999999999999999998654
No 376
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=94.34 E-value=0.046 Score=52.45 Aligned_cols=34 Identities=18% Similarity=-0.022 Sum_probs=31.8
Q ss_pred cEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCC
Q 019351 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY 39 (342)
Q Consensus 6 DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~ 39 (342)
+|+|||||.+|+-+|..|+..|.+|+++++.+.+
T Consensus 353 ~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l 386 (517)
T PRK15317 353 RVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPEL 386 (517)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCEEEEEEECccc
Confidence 7999999999999999999999999999987654
No 377
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=94.32 E-value=0.047 Score=52.86 Aligned_cols=35 Identities=26% Similarity=0.314 Sum_probs=32.2
Q ss_pred ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCC
Q 019351 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY 39 (342)
Q Consensus 5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~ 39 (342)
-+|+|||||..|+-+|..|++.|.+|+++++.+..
T Consensus 144 ~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~~ 178 (555)
T TIGR03143 144 MDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPDF 178 (555)
T ss_pred CEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCcc
Confidence 36999999999999999999999999999998764
No 378
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=94.27 E-value=0.064 Score=44.59 Aligned_cols=33 Identities=21% Similarity=0.181 Sum_probs=30.2
Q ss_pred ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (342)
Q Consensus 5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~ 37 (342)
-.|+|||||-.|...|..|.+.|.+|+|+....
T Consensus 10 k~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~ 42 (205)
T TIGR01470 10 RAVLVVGGGDVALRKARLLLKAGAQLRVIAEEL 42 (205)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 479999999999999999999999999998753
No 379
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=94.25 E-value=0.17 Score=44.56 Aligned_cols=54 Identities=17% Similarity=0.296 Sum_probs=42.5
Q ss_pred hHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCcEEEcCEEEECCCCCC
Q 019351 233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLP 289 (342)
Q Consensus 233 ~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~-~g~~~~a~~vI~~~~~~~ 289 (342)
.+...+.+.+++.|+++++ +.|.+|+.+ ++. +.+++ ++.++.+|+||+|+|..+
T Consensus 58 ~~~~~l~~~~~~~gv~~~~-~~v~~v~~~-~~~-~~v~~~~~~~~~~d~liiAtG~~~ 112 (300)
T TIGR01292 58 ELMEKMKEQAVKFGAEIIY-EEVIKVDLS-DRP-FKVKTGDGKEYTAKAVIIATGASA 112 (300)
T ss_pred HHHHHHHHHHHHcCCeEEE-EEEEEEEec-CCe-eEEEeCCCCEEEeCEEEECCCCCc
Confidence 5667777888888999999 899999876 443 44554 567899999999999764
No 380
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=94.22 E-value=0.067 Score=47.65 Aligned_cols=34 Identities=29% Similarity=0.444 Sum_probs=31.4
Q ss_pred cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (342)
Q Consensus 4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~ 37 (342)
..+|.|||+|.-|...|..|+++|++|.+++++.
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~ 37 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASANGHRVRVWSRRS 37 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 4579999999999999999999999999999864
No 381
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=94.16 E-value=0.072 Score=42.70 Aligned_cols=32 Identities=22% Similarity=0.153 Sum_probs=29.1
Q ss_pred ccEEEECCCc-hHHHHHHhhhhCCCeEEEEcCC
Q 019351 5 YDVIVLGTGL-KECILSGLLSVDGLKVLHMDRN 36 (342)
Q Consensus 5 ~DViIiG~Gi-aGl~aA~~L~~~G~~V~vlE~~ 36 (342)
.+|+|||+|- .|..+|..|.+.|.+|+++.+.
T Consensus 45 k~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~ 77 (168)
T cd01080 45 KKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK 77 (168)
T ss_pred CEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence 5799999995 6999999999999999999875
No 382
>PLN02546 glutathione reductase
Probab=94.14 E-value=0.058 Score=52.10 Aligned_cols=37 Identities=14% Similarity=0.100 Sum_probs=33.3
Q ss_pred ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCC
Q 019351 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG 41 (342)
Q Consensus 5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG 41 (342)
-+|+|||||..|+-.|..|+..|.+|+++|+.+.+..
T Consensus 253 k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il~ 289 (558)
T PLN02546 253 EKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLR 289 (558)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEEecccccc
Confidence 3799999999999999999999999999999877543
No 383
>PRK12831 putative oxidoreductase; Provisional
Probab=94.11 E-value=0.058 Score=50.98 Aligned_cols=34 Identities=21% Similarity=0.049 Sum_probs=31.1
Q ss_pred ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCC
Q 019351 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY 38 (342)
Q Consensus 5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~ 38 (342)
-+|+|||||..|+-+|..|.+.|.+|+++++++.
T Consensus 282 k~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~~ 315 (464)
T PRK12831 282 KKVAVVGGGNVAMDAARTALRLGAEVHIVYRRSE 315 (464)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCEEEEEeecCc
Confidence 3799999999999999999999999999998653
No 384
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=94.07 E-value=0.073 Score=42.53 Aligned_cols=32 Identities=22% Similarity=0.301 Sum_probs=28.1
Q ss_pred ccEEEECCCchHHHHHHhhhhCCCeEEEEcCC
Q 019351 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRN 36 (342)
Q Consensus 5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~ 36 (342)
.+|.|||.|..|...|..|.++|++|.++++.
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~ 33 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRS 33 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTTEEEEEESS
T ss_pred CEEEEEchHHHHHHHHHHHHhcCCeEEeeccc
Confidence 36999999999999999999999999999975
No 385
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=94.05 E-value=0.052 Score=47.13 Aligned_cols=42 Identities=31% Similarity=0.431 Sum_probs=35.5
Q ss_pred ccEEEECCCchHHHHHHhhhhCCCeEEEEcCC--------CCCCCcCccc
Q 019351 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRN--------DYYGGESSSL 46 (342)
Q Consensus 5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~--------~~~GG~~~t~ 46 (342)
-+|+|||||+.|.-+|..+.-.|.+|+++|.+ +..||+..+.
T Consensus 169 ~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~ 218 (371)
T COG0686 169 AKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTL 218 (371)
T ss_pred ccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEE
Confidence 47999999999999999999999999999997 3456665444
No 386
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=94.02 E-value=0.066 Score=48.91 Aligned_cols=32 Identities=25% Similarity=0.270 Sum_probs=30.2
Q ss_pred ccEEEECCCchHHHHHHhhhhCCCeEEEEcCC
Q 019351 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRN 36 (342)
Q Consensus 5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~ 36 (342)
.+|+|||+|..|+.+|..|...|.+|+++|++
T Consensus 168 ~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~ 199 (370)
T TIGR00518 168 GDVTIIGGGVVGTNAAKMANGLGATVTILDIN 199 (370)
T ss_pred ceEEEEcCCHHHHHHHHHHHHCCCeEEEEECC
Confidence 57999999999999999999999999999985
No 387
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=93.99 E-value=0.16 Score=46.78 Aligned_cols=59 Identities=22% Similarity=0.281 Sum_probs=50.2
Q ss_pred ChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCcEEEcCEEEECCCCCCc
Q 019351 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLPN 290 (342)
Q Consensus 232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~-~g~~~~a~~vI~~~~~~~~ 290 (342)
..+.+.+..+.+.+|+++++++.+.+++.+++|++.-|.. ++.++.||.||+.+|..|.
T Consensus 255 ~~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~adlvv~GiG~~p~ 314 (478)
T KOG1336|consen 255 PSIGQFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEADLVVVGIGIKPN 314 (478)
T ss_pred HHHHHHHHHHHHhcCeEEEEecceeecccCCCCcEEEEEeccCCEeccCeEEEeeccccc
Confidence 4566777888899999999999999998776788887777 8899999999999887653
No 388
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=93.98 E-value=0.086 Score=43.66 Aligned_cols=33 Identities=21% Similarity=0.248 Sum_probs=30.1
Q ss_pred cccEEEECCCchHHHHHHhhhhCCC-eEEEEcCC
Q 019351 4 EYDVIVLGTGLKECILSGLLSVDGL-KVLHMDRN 36 (342)
Q Consensus 4 ~~DViIiG~GiaGl~aA~~L~~~G~-~V~vlE~~ 36 (342)
...|+|||+|-.|..+|..|++.|. +++++|..
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 3579999999999999999999997 79999985
No 389
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=93.95 E-value=0.068 Score=49.57 Aligned_cols=35 Identities=26% Similarity=0.191 Sum_probs=32.6
Q ss_pred ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCC
Q 019351 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY 39 (342)
Q Consensus 5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~ 39 (342)
..|+|+|-|.+|+++|..|.+.|.+|++.|.++..
T Consensus 8 ~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~ 42 (448)
T COG0771 8 KKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAP 42 (448)
T ss_pred CEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCc
Confidence 57999999999999999999999999999987766
No 390
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=93.90 E-value=0.064 Score=48.74 Aligned_cols=33 Identities=24% Similarity=0.239 Sum_probs=29.9
Q ss_pred cEEEECCCchHHHHHHhhhhCCCe-EEEEcCCCC
Q 019351 6 DVIVLGTGLKECILSGLLSVDGLK-VLHMDRNDY 38 (342)
Q Consensus 6 DViIiG~GiaGl~aA~~L~~~G~~-V~vlE~~~~ 38 (342)
.|+|||+|..|+-+|..|.+.|.+ |+|+++.+.
T Consensus 174 ~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~~ 207 (352)
T PRK12770 174 KVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRTI 207 (352)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCeEEEEeecch
Confidence 699999999999999999999986 999998654
No 391
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=93.89 E-value=0.076 Score=47.58 Aligned_cols=32 Identities=28% Similarity=0.359 Sum_probs=30.0
Q ss_pred cEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (342)
Q Consensus 6 DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~ 37 (342)
+|.|||+|..|...|..|+++|++|.++++++
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~ 34 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARNGHDVTLWARDP 34 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence 69999999999999999999999999999853
No 392
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=93.84 E-value=0.098 Score=46.78 Aligned_cols=36 Identities=17% Similarity=0.308 Sum_probs=31.8
Q ss_pred CcccEEEECCCchHHHHHHhhhhCCC-eEEEEcCCCC
Q 019351 3 EEYDVIVLGTGLKECILSGLLSVDGL-KVLHMDRNDY 38 (342)
Q Consensus 3 ~~~DViIiG~GiaGl~aA~~L~~~G~-~V~vlE~~~~ 38 (342)
...+|+|||+|..|...|+.|+..|+ +|.++|.++.
T Consensus 5 ~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~ 41 (321)
T PTZ00082 5 KRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKN 41 (321)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCc
Confidence 34689999999999999999999995 8999998654
No 393
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=93.73 E-value=0.064 Score=46.81 Aligned_cols=35 Identities=17% Similarity=0.258 Sum_probs=30.4
Q ss_pred CcccEEEECCCchHHHHHHhhhhC-C-CeEEEEcCCC
Q 019351 3 EEYDVIVLGTGLKECILSGLLSVD-G-LKVLHMDRND 37 (342)
Q Consensus 3 ~~~DViIiG~GiaGl~aA~~L~~~-G-~~V~vlE~~~ 37 (342)
.++.|+|||||-+|++.|..+.++ | -+|-|+|..+
T Consensus 38 ~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e 74 (446)
T KOG3851|consen 38 KHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAE 74 (446)
T ss_pred cceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchh
Confidence 468999999999999999999875 5 5899999865
No 394
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=93.71 E-value=0.076 Score=50.03 Aligned_cols=32 Identities=13% Similarity=0.261 Sum_probs=28.7
Q ss_pred cEEEECCCchHHHHHHhhhhCC--CeEEEEcCCC
Q 019351 6 DVIVLGTGLKECILSGLLSVDG--LKVLHMDRND 37 (342)
Q Consensus 6 DViIiG~GiaGl~aA~~L~~~G--~~V~vlE~~~ 37 (342)
+|+|||.|..|+.+|..|+++| ++|+.+|.+.
T Consensus 3 ~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~ 36 (473)
T PLN02353 3 KICCIGAGYVGGPTMAVIALKCPDIEVVVVDISV 36 (473)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCH
Confidence 5999999999999999999985 7899998754
No 395
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=93.70 E-value=0.076 Score=46.53 Aligned_cols=32 Identities=25% Similarity=0.258 Sum_probs=29.7
Q ss_pred cEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (342)
Q Consensus 6 DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~ 37 (342)
.|.|||.|..|.+.|..|+++|++|++++++.
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~ 33 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRE 33 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECCH
Confidence 59999999999999999999999999999853
No 396
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.67 E-value=0.081 Score=49.95 Aligned_cols=32 Identities=31% Similarity=0.424 Sum_probs=30.4
Q ss_pred cEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (342)
Q Consensus 6 DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~ 37 (342)
.|.|+|.|.+|+++|..|.+.|++|++.|.++
T Consensus 16 ~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~ 47 (458)
T PRK01710 16 KVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKS 47 (458)
T ss_pred eEEEEcccHHHHHHHHHHHHCCCEEEEECCCC
Confidence 69999999999999999999999999999865
No 397
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=93.66 E-value=0.084 Score=47.42 Aligned_cols=31 Identities=26% Similarity=0.292 Sum_probs=29.4
Q ss_pred cEEEECCCchHHHHHHhhhhCCCeEEEEcCC
Q 019351 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRN 36 (342)
Q Consensus 6 DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~ 36 (342)
+|.|||+|--|...|..|+++|++|.++.++
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~ 32 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKISVNLWGRN 32 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEecC
Confidence 5999999999999999999999999999885
No 398
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=93.66 E-value=0.1 Score=41.32 Aligned_cols=31 Identities=19% Similarity=0.131 Sum_probs=28.6
Q ss_pred ccEEEECCCchHHHHHHhhhhCCCeEEEEcC
Q 019351 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDR 35 (342)
Q Consensus 5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~ 35 (342)
-.|+|||||-.|..-|..|.+.|.+|+|+..
T Consensus 14 ~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp 44 (157)
T PRK06719 14 KVVVIIGGGKIAYRKASGLKDTGAFVTVVSP 44 (157)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEcC
Confidence 5799999999999999999999999999943
No 399
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=93.66 E-value=0.24 Score=46.59 Aligned_cols=41 Identities=27% Similarity=0.411 Sum_probs=37.8
Q ss_pred cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCcc
Q 019351 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS 45 (342)
Q Consensus 4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t 45 (342)
+|||+|||||++|++||.+|+++|++|+|+|+ +.+||.|..
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~-~~~GG~c~~ 42 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEE-PRVGGTCVI 42 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEec-CccCceeec
Confidence 58999999999999999999999999999999 478998753
No 400
>PLN02507 glutathione reductase
Probab=93.62 E-value=0.25 Score=47.16 Aligned_cols=42 Identities=21% Similarity=0.237 Sum_probs=38.0
Q ss_pred cccEEEECCCchHHHHHHhhhhCCCeEEEEcC---------CCCCCCcCcc
Q 019351 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDR---------NDYYGGESSS 45 (342)
Q Consensus 4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~---------~~~~GG~~~t 45 (342)
+|||+|||||.+|+.||.+|++.|++|+|+|+ .+.+||.|..
T Consensus 25 ~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~~~~~~~~~~~~~GGtc~n 75 (499)
T PLN02507 25 DFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSESIGGVGGTCVI 75 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcccccccCCCccceeec
Confidence 58999999999999999999999999999996 3568998854
No 401
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=93.58 E-value=0.1 Score=43.24 Aligned_cols=32 Identities=16% Similarity=0.161 Sum_probs=29.5
Q ss_pred ccEEEECCCchHHHHHHhhhhCCCeEEEEcCC
Q 019351 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRN 36 (342)
Q Consensus 5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~ 36 (342)
..|+|||||-.|...|..|.+.|.+|+|+++.
T Consensus 11 k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 11 KRVVIVGGGKVAGRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 57999999999999999999999999999763
No 402
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=93.48 E-value=0.079 Score=50.19 Aligned_cols=33 Identities=24% Similarity=0.292 Sum_probs=30.2
Q ss_pred ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (342)
Q Consensus 5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~ 37 (342)
-+|+|+|+|..|+.|+..+...|.+|.++|.++
T Consensus 166 ~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~ 198 (509)
T PRK09424 166 AKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRP 198 (509)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 479999999999999999999999999998864
No 403
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=93.48 E-value=0.074 Score=38.86 Aligned_cols=33 Identities=27% Similarity=0.252 Sum_probs=30.1
Q ss_pred ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (342)
Q Consensus 5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~ 37 (342)
..|+|||||-.|..-+..|.+.|.+|+|+....
T Consensus 8 ~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~ 40 (103)
T PF13241_consen 8 KRVLVVGGGPVAARKARLLLEAGAKVTVISPEI 40 (103)
T ss_dssp -EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence 579999999999999999999999999998763
No 404
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.43 E-value=0.09 Score=49.75 Aligned_cols=33 Identities=12% Similarity=-0.138 Sum_probs=30.6
Q ss_pred cEEEECCCchHHHHHHhhhhCCCeEEEEcCCCC
Q 019351 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY 38 (342)
Q Consensus 6 DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~ 38 (342)
.|+|+|.|.+|.++|..|.+.|.+|++.|.++.
T Consensus 10 ~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~~ 42 (468)
T PRK04690 10 RVALWGWGREGRAAYRALRAHLPAQALTLFCNA 42 (468)
T ss_pred EEEEEccchhhHHHHHHHHHcCCEEEEEcCCCc
Confidence 699999999999999999999999999997643
No 405
>PRK14694 putative mercuric reductase; Provisional
Probab=93.37 E-value=0.32 Score=46.10 Aligned_cols=42 Identities=19% Similarity=0.319 Sum_probs=38.2
Q ss_pred CcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCcc
Q 019351 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS 45 (342)
Q Consensus 3 ~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t 45 (342)
.+|||+|||||.+|++||.+|++.|++|+|+|++ .+||.|..
T Consensus 5 ~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~-~~GGtc~n 46 (468)
T PRK14694 5 NNLHIAVIGSGGSAMAAALKATERGARVTLIERG-TIGGTCVN 46 (468)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEcc-ccccceec
Confidence 3699999999999999999999999999999996 68987753
No 406
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=93.36 E-value=0.27 Score=46.14 Aligned_cols=44 Identities=25% Similarity=0.531 Sum_probs=39.4
Q ss_pred CCCcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCC-CCCcCcc
Q 019351 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY-YGGESSS 45 (342)
Q Consensus 1 m~~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~-~GG~~~t 45 (342)
|. +|||+|||||.+|++||.+|+++|++|+|+|+.+. +||.+..
T Consensus 1 ~~-~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~~~GG~~~~ 45 (441)
T PRK08010 1 MN-KYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCIN 45 (441)
T ss_pred CC-cCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCCccceeEee
Confidence 64 59999999999999999999999999999999874 7998753
No 407
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=93.27 E-value=0.087 Score=50.14 Aligned_cols=33 Identities=24% Similarity=0.317 Sum_probs=30.7
Q ss_pred ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (342)
Q Consensus 5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~ 37 (342)
..|.|||+|..|...|..|+++|++|+++|+++
T Consensus 6 ~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~ 38 (503)
T TIGR02279 6 VTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRA 38 (503)
T ss_pred cEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 469999999999999999999999999999864
No 408
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=93.27 E-value=0.14 Score=39.83 Aligned_cols=32 Identities=28% Similarity=0.460 Sum_probs=29.1
Q ss_pred cEEEECC-CchHHHHHHhhhhCC--CeEEEEcCCC
Q 019351 6 DVIVLGT-GLKECILSGLLSVDG--LKVLHMDRND 37 (342)
Q Consensus 6 DViIiG~-GiaGl~aA~~L~~~G--~~V~vlE~~~ 37 (342)
+|+|||+ |..|.++|+.|...+ .++.++|.+.
T Consensus 2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~ 36 (141)
T PF00056_consen 2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINE 36 (141)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSH
T ss_pred EEEEECCCChHHHHHHHHHHhCCCCCceEEeccCc
Confidence 7999999 999999999999988 4799999973
No 409
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=93.22 E-value=0.11 Score=49.66 Aligned_cols=34 Identities=24% Similarity=0.257 Sum_probs=31.1
Q ss_pred ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCC
Q 019351 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY 38 (342)
Q Consensus 5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~ 38 (342)
-.|.|||+|..|...|..|+++|++|+++|.+..
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e 41 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAG 41 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 4699999999999999999999999999998653
No 410
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=93.21 E-value=0.12 Score=47.07 Aligned_cols=43 Identities=26% Similarity=0.497 Sum_probs=35.5
Q ss_pred cEEEECCCchHHHHHHhhhhCC-CeEEEEcCC--------CCCCCcCcccch
Q 019351 6 DVIVLGTGLKECILSGLLSVDG-LKVLHMDRN--------DYYGGESSSLNL 48 (342)
Q Consensus 6 DViIiG~GiaGl~aA~~L~~~G-~~V~vlE~~--------~~~GG~~~t~~~ 48 (342)
+|+|||+|-.|.++|+.|+++| .+|++-+|. ...+++..+...
T Consensus 3 ~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~v 54 (389)
T COG1748 3 KILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQV 54 (389)
T ss_pred cEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEe
Confidence 6999999999999999999999 999999996 344555555443
No 411
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=93.19 E-value=0.14 Score=38.12 Aligned_cols=31 Identities=26% Similarity=0.474 Sum_probs=27.8
Q ss_pred EEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351 7 VIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (342)
Q Consensus 7 ViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~ 37 (342)
|+|+|.|-.|...|..|.+.+.+|+++|.++
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~ 31 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDP 31 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCc
Confidence 7999999999999999999778999999963
No 412
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.14 E-value=0.12 Score=48.69 Aligned_cols=37 Identities=24% Similarity=0.329 Sum_probs=32.8
Q ss_pred CCCcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (342)
Q Consensus 1 m~~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~ 37 (342)
|.++--|+|||.|-+|+++|..|.++|++|++.|...
T Consensus 3 ~~~~~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~ 39 (448)
T PRK03803 3 MQSDGLHIVVGLGKTGLSVVRFLARQGIPFAVMDSRE 39 (448)
T ss_pred cccCCeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCC
Confidence 5555569999999999999999999999999999765
No 413
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=93.13 E-value=0.12 Score=45.91 Aligned_cols=32 Identities=22% Similarity=0.377 Sum_probs=29.4
Q ss_pred cEEEECCCchHHHHHHhhhhCC--CeEEEEcCCC
Q 019351 6 DVIVLGTGLKECILSGLLSVDG--LKVLHMDRND 37 (342)
Q Consensus 6 DViIiG~GiaGl~aA~~L~~~G--~~V~vlE~~~ 37 (342)
+|+|||+|..|.++|+.|+..| .+|.++|++.
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~ 35 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINE 35 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 5999999999999999999999 5899999864
No 414
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=93.12 E-value=0.35 Score=46.01 Aligned_cols=44 Identities=18% Similarity=0.258 Sum_probs=39.0
Q ss_pred CcccEEEECCCchHHHHHHhhhhC-CCeEEEEcCC--------CCCCCcCccc
Q 019351 3 EEYDVIVLGTGLKECILSGLLSVD-GLKVLHMDRN--------DYYGGESSSL 46 (342)
Q Consensus 3 ~~~DViIiG~GiaGl~aA~~L~~~-G~~V~vlE~~--------~~~GG~~~t~ 46 (342)
.+|||+|||||.+|..||.++++. |.+|+++|+. +.+||.|-..
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~~~~~~~~~~~~GGtCln~ 54 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQTHHGPPHYAALGGTCVNV 54 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecccCccccccCCccCeecCc
Confidence 469999999999999999999997 8999999984 5799987543
No 415
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=93.09 E-value=0.11 Score=47.80 Aligned_cols=31 Identities=19% Similarity=0.204 Sum_probs=27.8
Q ss_pred cEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (342)
Q Consensus 6 DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~ 37 (342)
+|.|||.|..|+.+|..|+. |++|+++|.+.
T Consensus 2 kI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~ 32 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQ-NHEVVALDILP 32 (388)
T ss_pred EEEEECCCHHHHHHHHHHHh-CCcEEEEECCH
Confidence 59999999999999988885 99999999854
No 416
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.09 E-value=0.11 Score=49.56 Aligned_cols=32 Identities=22% Similarity=0.253 Sum_probs=29.7
Q ss_pred ccEEEECCCchHHHHHHhhhhCCCeEEEEcCC
Q 019351 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRN 36 (342)
Q Consensus 5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~ 36 (342)
-.|+|+|.|.+|++++..|...|.+|++.|.+
T Consensus 13 ~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~ 44 (488)
T PRK03369 13 APVLVAGAGVTGRAVLAALTRFGARPTVCDDD 44 (488)
T ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 36999999999999999999999999999965
No 417
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=93.07 E-value=0.12 Score=48.19 Aligned_cols=36 Identities=19% Similarity=0.243 Sum_probs=31.4
Q ss_pred cEEEECCCchHHHHHHhhhh--------------CCCeEEEEcCCCCCCC
Q 019351 6 DVIVLGTGLKECILSGLLSV--------------DGLKVLHMDRNDYYGG 41 (342)
Q Consensus 6 DViIiG~GiaGl~aA~~L~~--------------~G~~V~vlE~~~~~GG 41 (342)
.|+|||||.+|+-.|..|++ .|.+|+++|+.+.+-.
T Consensus 175 ~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~ 224 (424)
T PTZ00318 175 HFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLG 224 (424)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCcccc
Confidence 79999999999999999885 4789999999876643
No 418
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=93.05 E-value=0.14 Score=39.44 Aligned_cols=32 Identities=25% Similarity=0.383 Sum_probs=28.9
Q ss_pred ccEEEECCCchHHHHHHhhhhCCCe-EEEEcCC
Q 019351 5 YDVIVLGTGLKECILSGLLSVDGLK-VLHMDRN 36 (342)
Q Consensus 5 ~DViIiG~GiaGl~aA~~L~~~G~~-V~vlE~~ 36 (342)
-.++|||+|-+|-.+++.|+..|.+ |+|+-|.
T Consensus 13 ~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt 45 (135)
T PF01488_consen 13 KRVLVIGAGGAARAVAAALAALGAKEITIVNRT 45 (135)
T ss_dssp SEEEEESSSHHHHHHHHHHHHTTSSEEEEEESS
T ss_pred CEEEEECCHHHHHHHHHHHHHcCCCEEEEEECC
Confidence 5799999999999999999999965 9999764
No 419
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=93.02 E-value=0.11 Score=49.02 Aligned_cols=34 Identities=24% Similarity=0.171 Sum_probs=30.8
Q ss_pred ccEEEECCCchHHH-HHHhhhhCCCeEEEEcCCCC
Q 019351 5 YDVIVLGTGLKECI-LSGLLSVDGLKVLHMDRNDY 38 (342)
Q Consensus 5 ~DViIiG~GiaGl~-aA~~L~~~G~~V~vlE~~~~ 38 (342)
-.|.|||.|-+|++ +|..|.++|++|++.|.+..
T Consensus 8 ~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~ 42 (461)
T PRK00421 8 KRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKES 42 (461)
T ss_pred CEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCC
Confidence 46999999999999 69999999999999998654
No 420
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.01 E-value=0.13 Score=48.38 Aligned_cols=35 Identities=20% Similarity=0.190 Sum_probs=31.7
Q ss_pred ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCC
Q 019351 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY 39 (342)
Q Consensus 5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~ 39 (342)
..|+|+|.|.+|+++|..|+++|++|++.|..+..
T Consensus 6 ~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~ 40 (445)
T PRK04308 6 KKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKP 40 (445)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCc
Confidence 46999999999999999999999999999986653
No 421
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.00 E-value=0.11 Score=48.83 Aligned_cols=33 Identities=27% Similarity=0.229 Sum_probs=30.3
Q ss_pred ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (342)
Q Consensus 5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~ 37 (342)
-.|+|+|+|-+|+++|..|+++|.+|++.|++.
T Consensus 6 k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~ 38 (447)
T PRK02472 6 KKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKP 38 (447)
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 358999999999999999999999999999764
No 422
>PRK14727 putative mercuric reductase; Provisional
Probab=92.99 E-value=0.36 Score=45.85 Aligned_cols=56 Identities=16% Similarity=0.127 Sum_probs=44.5
Q ss_pred hHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCcEEEcCEEEECCCCCCc
Q 019351 233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPN 290 (342)
Q Consensus 233 ~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~~~~~ 290 (342)
.+...+.+.+++.|+++++++.|+++..+ ++. ..+.++++++.||.||+|+|..|+
T Consensus 229 ~~~~~l~~~L~~~GV~i~~~~~V~~i~~~-~~~-~~v~~~~g~i~aD~VlvA~G~~pn 284 (479)
T PRK14727 229 LLGETLTACFEKEGIEVLNNTQASLVEHD-DNG-FVLTTGHGELRAEKLLISTGRHAN 284 (479)
T ss_pred HHHHHHHHHHHhCCCEEEcCcEEEEEEEe-CCE-EEEEEcCCeEEeCEEEEccCCCCC
Confidence 45667777888899999999999999865 443 445555667999999999998875
No 423
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=92.93 E-value=0.15 Score=42.22 Aligned_cols=32 Identities=31% Similarity=0.301 Sum_probs=29.9
Q ss_pred ccEEEECCCchHHHHHHhhhhCCCeEEEEcCC
Q 019351 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRN 36 (342)
Q Consensus 5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~ 36 (342)
..|+|+|.|-.|..+|..|.+.|.+|++.|.+
T Consensus 29 k~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~ 60 (200)
T cd01075 29 KTVAVQGLGKVGYKLAEHLLEEGAKLIVADIN 60 (200)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 46999999999999999999999999999875
No 424
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=92.93 E-value=0.12 Score=45.78 Aligned_cols=32 Identities=25% Similarity=0.444 Sum_probs=28.8
Q ss_pred cEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (342)
Q Consensus 6 DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~ 37 (342)
.|.|+|+|..|...|++|+++|.+|+++=+.+
T Consensus 2 kI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~ 33 (307)
T COG1893 2 KILILGAGAIGSLLGARLAKAGHDVTLLVRSR 33 (307)
T ss_pred eEEEECCcHHHHHHHHHHHhCCCeEEEEecHH
Confidence 69999999999999999999998888886654
No 425
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=92.87 E-value=0.14 Score=43.09 Aligned_cols=31 Identities=32% Similarity=0.338 Sum_probs=28.4
Q ss_pred cEEEEC-CCchHHHHHHhhhhCCCeEEEEcCC
Q 019351 6 DVIVLG-TGLKECILSGLLSVDGLKVLHMDRN 36 (342)
Q Consensus 6 DViIiG-~GiaGl~aA~~L~~~G~~V~vlE~~ 36 (342)
+|.||| +|..|.+.|..|+++|++|+++.++
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~ 33 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKAGNKIIIGSRD 33 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcC
Confidence 599997 7999999999999999999999775
No 426
>PRK06223 malate dehydrogenase; Reviewed
Probab=92.85 E-value=0.15 Score=45.33 Aligned_cols=33 Identities=24% Similarity=0.408 Sum_probs=29.7
Q ss_pred ccEEEECCCchHHHHHHhhhhCCC-eEEEEcCCC
Q 019351 5 YDVIVLGTGLKECILSGLLSVDGL-KVLHMDRND 37 (342)
Q Consensus 5 ~DViIiG~GiaGl~aA~~L~~~G~-~V~vlE~~~ 37 (342)
.+|+|||+|..|...|+.|+..|. +|.++|.+.
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~ 36 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVE 36 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCC
Confidence 479999999999999999999875 999999854
No 427
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=92.84 E-value=0.087 Score=46.57 Aligned_cols=32 Identities=19% Similarity=-0.016 Sum_probs=27.6
Q ss_pred ccEEEECCCchHHHHHHhhhhCCCeEEEEcCC
Q 019351 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRN 36 (342)
Q Consensus 5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~ 36 (342)
-||+|||||.+|+-||..|+--=..|+++|=.
T Consensus 355 K~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~ 386 (520)
T COG3634 355 KRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFA 386 (520)
T ss_pred ceEEEECCCcchHHHHHhHHhhhheeeeeecc
Confidence 58999999999999999998444689999864
No 428
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=92.83 E-value=0.13 Score=39.59 Aligned_cols=32 Identities=22% Similarity=0.384 Sum_probs=27.8
Q ss_pred EEEECCCchHHHHHHhhhhCCCeEEEEcCCCC
Q 019351 7 VIVLGTGLKECILSGLLSVDGLKVLHMDRNDY 38 (342)
Q Consensus 7 ViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~ 38 (342)
++|+|+|..+...|..++..|++|+|+|-++.
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e 32 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRPE 32 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-CC
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCcc
Confidence 58999999999999999999999999999743
No 429
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=92.83 E-value=0.15 Score=44.14 Aligned_cols=34 Identities=21% Similarity=0.268 Sum_probs=30.9
Q ss_pred cccEEEECCCchHHHHHHhhhhCC-CeEEEEcCCC
Q 019351 4 EYDVIVLGTGLKECILSGLLSVDG-LKVLHMDRND 37 (342)
Q Consensus 4 ~~DViIiG~GiaGl~aA~~L~~~G-~~V~vlE~~~ 37 (342)
...|+|||+|-.|..+|..|++.| .+++++|...
T Consensus 30 ~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~ 64 (268)
T PRK15116 30 DAHICVVGIGGVGSWAAEALARTGIGAITLIDMDD 64 (268)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence 357999999999999999999999 7999999853
No 430
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=92.77 E-value=0.13 Score=48.54 Aligned_cols=34 Identities=21% Similarity=0.128 Sum_probs=30.6
Q ss_pred ccEEEECCCchHHHHHHhhhhCCC-eEEEEcCCCC
Q 019351 5 YDVIVLGTGLKECILSGLLSVDGL-KVLHMDRNDY 38 (342)
Q Consensus 5 ~DViIiG~GiaGl~aA~~L~~~G~-~V~vlE~~~~ 38 (342)
-+|+|||||..|+-+|..|++.|. +|+++++++.
T Consensus 274 ~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~ 308 (457)
T PRK11749 274 KRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGR 308 (457)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCc
Confidence 379999999999999999999997 8999998643
No 431
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=92.77 E-value=0.14 Score=47.28 Aligned_cols=33 Identities=18% Similarity=0.100 Sum_probs=30.3
Q ss_pred ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (342)
Q Consensus 5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~ 37 (342)
-.|+|+|+|..|+.+|..|...|.+|+|+|..+
T Consensus 203 ktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~ 235 (413)
T cd00401 203 KVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDP 235 (413)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence 369999999999999999999999999998864
No 432
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=92.72 E-value=0.19 Score=44.87 Aligned_cols=34 Identities=21% Similarity=0.355 Sum_probs=30.6
Q ss_pred cccEEEECCCchHHHHHHhhhhCCC--eEEEEcCCC
Q 019351 4 EYDVIVLGTGLKECILSGLLSVDGL--KVLHMDRND 37 (342)
Q Consensus 4 ~~DViIiG~GiaGl~aA~~L~~~G~--~V~vlE~~~ 37 (342)
..+|+|||+|-.|.++|+.|+..|. ++.++|.+.
T Consensus 6 ~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~ 41 (315)
T PRK00066 6 HNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINK 41 (315)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 4789999999999999999999996 799999853
No 433
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=92.72 E-value=0.12 Score=45.63 Aligned_cols=32 Identities=19% Similarity=0.164 Sum_probs=29.7
Q ss_pred cEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (342)
Q Consensus 6 DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~ 37 (342)
+|.|||.|..|...|..|+++|++|++++++.
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~ 32 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGP 32 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 48999999999999999999999999999864
No 434
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=92.71 E-value=0.13 Score=39.52 Aligned_cols=32 Identities=22% Similarity=0.377 Sum_probs=29.1
Q ss_pred ccEEEECCCchHHHHHHhhhhCCC-eEEEEcCC
Q 019351 5 YDVIVLGTGLKECILSGLLSVDGL-KVLHMDRN 36 (342)
Q Consensus 5 ~DViIiG~GiaGl~aA~~L~~~G~-~V~vlE~~ 36 (342)
..|+|+|+|-.|...|..|++.|. +++++|..
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d 35 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLARSGVGKITLVDDD 35 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred CEEEEECcCHHHHHHHHHHHHhCCCceeecCCc
Confidence 579999999999999999999995 89999984
No 435
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.61 E-value=0.14 Score=47.73 Aligned_cols=36 Identities=28% Similarity=0.445 Sum_probs=31.8
Q ss_pred CCCcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (342)
Q Consensus 1 m~~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~ 37 (342)
|.. -.|.|||-|.+|+++|..|.++|++|.+.|.+.
T Consensus 1 ~~~-~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~ 36 (418)
T PRK00683 1 MGL-QRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSL 36 (418)
T ss_pred CCC-CeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 444 369999999999999999999999999999764
No 436
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=92.51 E-value=0.15 Score=44.95 Aligned_cols=32 Identities=22% Similarity=0.414 Sum_probs=30.2
Q ss_pred ccEEEECCCchHHHHHHhhhhCCCeEEEEcCC
Q 019351 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRN 36 (342)
Q Consensus 5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~ 36 (342)
..|.|||||.-|-..|+.++..|++|+++|.+
T Consensus 4 ~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~ 35 (307)
T COG1250 4 KKVAVIGAGVMGAGIAAVFALAGYDVVLKDIS 35 (307)
T ss_pred cEEEEEcccchhHHHHHHHhhcCCceEEEeCC
Confidence 47999999999999999999988999999997
No 437
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=92.50 E-value=0.14 Score=45.34 Aligned_cols=31 Identities=26% Similarity=0.469 Sum_probs=28.4
Q ss_pred EEEECCCchHHHHHHhhhhCCC-eEEEEcCCC
Q 019351 7 VIVLGTGLKECILSGLLSVDGL-KVLHMDRND 37 (342)
Q Consensus 7 ViIiG~GiaGl~aA~~L~~~G~-~V~vlE~~~ 37 (342)
|.|||+|..|..+|+.|+..|. +|+++|.+.
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e 32 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVE 32 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCC
Confidence 5899999999999999999886 999999974
No 438
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=92.50 E-value=0.12 Score=51.46 Aligned_cols=33 Identities=24% Similarity=0.289 Sum_probs=30.7
Q ss_pred ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (342)
Q Consensus 5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~ 37 (342)
..|+|||+|..|...|+.++.+|++|+++|.++
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~ 346 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQ 346 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCH
Confidence 369999999999999999999999999999864
No 439
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.49 E-value=0.16 Score=47.79 Aligned_cols=31 Identities=19% Similarity=0.132 Sum_probs=28.3
Q ss_pred ccEEEECCCchHHHHHHhhhhCCCeEEEEcCC
Q 019351 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRN 36 (342)
Q Consensus 5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~ 36 (342)
-.|+|+|.|.+|.++|..|.+ |.+|+|.|.+
T Consensus 7 ~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~ 37 (454)
T PRK01368 7 QKIGVFGLGKTGISVYEELQN-KYDVIVYDDL 37 (454)
T ss_pred CEEEEEeecHHHHHHHHHHhC-CCEEEEECCC
Confidence 469999999999999999994 9999999964
No 440
>PRK13748 putative mercuric reductase; Provisional
Probab=92.47 E-value=0.45 Score=46.24 Aligned_cols=42 Identities=21% Similarity=0.292 Sum_probs=38.6
Q ss_pred CcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCcc
Q 019351 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS 45 (342)
Q Consensus 3 ~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t 45 (342)
.+|||+|||||.+|++||.+|++.|++|+|+|++ .+||.|..
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~-~~GG~c~n 138 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIERG-TIGGTCVN 138 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC-cceeeccc
Confidence 3699999999999999999999999999999997 88998753
No 441
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=92.37 E-value=0.23 Score=34.79 Aligned_cols=31 Identities=39% Similarity=0.476 Sum_probs=28.6
Q ss_pred ccEEEECCCchHHHHHHhhhhC-CCeEEEEcC
Q 019351 5 YDVIVLGTGLKECILSGLLSVD-GLKVLHMDR 35 (342)
Q Consensus 5 ~DViIiG~GiaGl~aA~~L~~~-G~~V~vlE~ 35 (342)
-+++|+|+|..|..+|..|.+. +.+|.++++
T Consensus 24 ~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 24 KTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 4799999999999999999998 589999988
No 442
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=92.33 E-value=0.22 Score=44.36 Aligned_cols=34 Identities=21% Similarity=0.271 Sum_probs=30.3
Q ss_pred cccEEEECCCchHHHHHHhhhhCCC--eEEEEcCCC
Q 019351 4 EYDVIVLGTGLKECILSGLLSVDGL--KVLHMDRND 37 (342)
Q Consensus 4 ~~DViIiG~GiaGl~aA~~L~~~G~--~V~vlE~~~ 37 (342)
+.+|+|||+|..|.++|+.|+..|. ++.++|.+.
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~ 38 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVVE 38 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 4689999999999999999999884 799999864
No 443
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=92.30 E-value=0.18 Score=44.63 Aligned_cols=32 Identities=28% Similarity=0.322 Sum_probs=30.0
Q ss_pred cEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (342)
Q Consensus 6 DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~ 37 (342)
+|.|||.|..|...|..|++.|++|++++++.
T Consensus 4 ~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~ 35 (296)
T PRK11559 4 KVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNP 35 (296)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 79999999999999999999999999998864
No 444
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=92.25 E-value=0.2 Score=45.89 Aligned_cols=33 Identities=21% Similarity=0.525 Sum_probs=30.5
Q ss_pred ccEEEEC-CCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351 5 YDVIVLG-TGLKECILSGLLSVDGLKVLHMDRND 37 (342)
Q Consensus 5 ~DViIiG-~GiaGl~aA~~L~~~G~~V~vlE~~~ 37 (342)
..|+||| .|..|-+.|..|+++|++|.++++++
T Consensus 99 ~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~ 132 (374)
T PRK11199 99 RPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDD 132 (374)
T ss_pred ceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCc
Confidence 5799999 89999999999999999999999864
No 445
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=92.22 E-value=0.16 Score=50.58 Aligned_cols=33 Identities=21% Similarity=0.245 Sum_probs=30.5
Q ss_pred ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (342)
Q Consensus 5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~ 37 (342)
..|+|||+|..|...|+.++.+|++|+++|.+.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~ 346 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQ 346 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCeEEEEeCCH
Confidence 359999999999999999999999999999864
No 446
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=92.17 E-value=0.49 Score=44.19 Aligned_cols=55 Identities=20% Similarity=0.157 Sum_probs=43.4
Q ss_pred hHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCcEEEcCEEEECCCCCCc
Q 019351 233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPN 290 (342)
Q Consensus 233 ~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~~~~~ 290 (342)
.+...+.+.+++.|+++++++.|++|..+ +++ .+..+|+++.+|.||+|+|..|+
T Consensus 180 ~~~~~~~~~l~~~gV~v~~~~~v~~i~~~--~~~-v~~~~g~~i~~D~vi~a~G~~p~ 234 (427)
T TIGR03385 180 EMNQIVEEELKKHEINLRLNEEVDSIEGE--ERV-KVFTSGGVYQADMVILATGIKPN 234 (427)
T ss_pred HHHHHHHHHHHHcCCEEEeCCEEEEEecC--CCE-EEEcCCCEEEeCEEEECCCccCC
Confidence 45666777788889999999999999754 333 34457889999999999998764
No 447
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=92.14 E-value=0.59 Score=47.64 Aligned_cols=39 Identities=10% Similarity=0.142 Sum_probs=33.2
Q ss_pred CCCcccEEEECCCchHHHHHHhhhhC----CCeEEEEcCCCCCC
Q 019351 1 MDEEYDVIVLGTGLKECILSGLLSVD----GLKVLHMDRNDYYG 40 (342)
Q Consensus 1 m~~~~DViIiG~GiaGl~aA~~L~~~----G~~V~vlE~~~~~G 40 (342)
|+. .+|+|||+|++|+.+|..|.+. +++|+|+++.++++
T Consensus 1 m~~-~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~ 43 (847)
T PRK14989 1 MSK-VRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIA 43 (847)
T ss_pred CCC-CcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCc
Confidence 554 4899999999999999999754 47999999998865
No 448
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=92.13 E-value=0.16 Score=51.53 Aligned_cols=38 Identities=18% Similarity=0.070 Sum_probs=33.4
Q ss_pred CCCcccEEEECCCchHHHH-HHhhhhCCCeEEEEcCCCC
Q 019351 1 MDEEYDVIVLGTGLKECIL-SGLLSVDGLKVLHMDRNDY 38 (342)
Q Consensus 1 m~~~~DViIiG~GiaGl~a-A~~L~~~G~~V~vlE~~~~ 38 (342)
|++...|.|||.|-+|+++ |..|.++|++|++.|.+..
T Consensus 1 ~~~~~~i~viG~G~sG~salA~~L~~~G~~V~~sD~~~~ 39 (809)
T PRK14573 1 MMKSLFYHFIGIGGIGMSALAHILLDRGYSVSGSDLSEG 39 (809)
T ss_pred CCCcceEEEEEecHHhHHHHHHHHHHCCCeEEEECCCCC
Confidence 5554579999999999999 9999999999999998653
No 449
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=92.05 E-value=0.2 Score=44.25 Aligned_cols=33 Identities=30% Similarity=0.325 Sum_probs=30.8
Q ss_pred ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (342)
Q Consensus 5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~ 37 (342)
..|+|||.|..|..+|..|...|.+|++++++.
T Consensus 153 ~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~ 185 (296)
T PRK08306 153 SNVLVLGFGRTGMTLARTLKALGANVTVGARKS 185 (296)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 579999999999999999999999999999873
No 450
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=91.98 E-value=0.22 Score=43.79 Aligned_cols=32 Identities=22% Similarity=0.293 Sum_probs=29.4
Q ss_pred ccEEEECCCchHHHHHHhhhhCCC-eEEEEcCC
Q 019351 5 YDVIVLGTGLKECILSGLLSVDGL-KVLHMDRN 36 (342)
Q Consensus 5 ~DViIiG~GiaGl~aA~~L~~~G~-~V~vlE~~ 36 (342)
..|+|||+|-+|-++|+.|++.|. +|+|+++.
T Consensus 128 k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~ 160 (284)
T PRK12549 128 ERVVQLGAGGAGAAVAHALLTLGVERLTIFDVD 160 (284)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEECCC
Confidence 369999999999999999999995 89999885
No 451
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=91.97 E-value=0.17 Score=47.84 Aligned_cols=33 Identities=24% Similarity=0.298 Sum_probs=30.5
Q ss_pred ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (342)
Q Consensus 5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~ 37 (342)
-.|+|+|+|..|+.++..+...|.+|+++|.++
T Consensus 165 akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~ 197 (511)
T TIGR00561 165 AKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRP 197 (511)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 579999999999999999999999999998864
No 452
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=91.93 E-value=0.58 Score=43.03 Aligned_cols=36 Identities=22% Similarity=0.419 Sum_probs=33.6
Q ss_pred CCCcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (342)
Q Consensus 1 m~~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~ 37 (342)
|++ +||+|||||++||++|..|+++|++|+|+|+.+
T Consensus 1 ~~~-~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~ 36 (384)
T PRK08849 1 MNK-YDIAVVGGGMVGAATALGFAKQGRSVAVIEGGE 36 (384)
T ss_pred CCc-ccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCC
Confidence 664 899999999999999999999999999999874
No 453
>PTZ00052 thioredoxin reductase; Provisional
Probab=91.91 E-value=0.61 Score=44.56 Aligned_cols=45 Identities=24% Similarity=0.321 Sum_probs=38.9
Q ss_pred CCCcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCC--------CCCCcCcc
Q 019351 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND--------YYGGESSS 45 (342)
Q Consensus 1 m~~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~--------~~GG~~~t 45 (342)
|..+|||+|||||.+|+.||.+|+++|++|+|+|+.. .+||.|-.
T Consensus 2 ~~~~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~~~~~~~~~~~~GG~C~n 54 (499)
T PTZ00052 2 LTFMYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYVKPSTQGTKWGLGGTCVN 54 (499)
T ss_pred CccccCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCCCCccccccccceecc
Confidence 5556999999999999999999999999999999732 48998743
No 454
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=91.86 E-value=0.17 Score=50.91 Aligned_cols=34 Identities=21% Similarity=0.085 Sum_probs=30.5
Q ss_pred ccEEEECCCchHHHHHHhhhhCCCe-EEEEcCCCC
Q 019351 5 YDVIVLGTGLKECILSGLLSVDGLK-VLHMDRNDY 38 (342)
Q Consensus 5 ~DViIiG~GiaGl~aA~~L~~~G~~-V~vlE~~~~ 38 (342)
-+|+|||||..|+-+|..|.+.|.+ |+++++++.
T Consensus 571 k~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~~ 605 (752)
T PRK12778 571 KKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRSE 605 (752)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCc
Confidence 3799999999999999999999986 999998653
No 455
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.85 E-value=0.19 Score=48.08 Aligned_cols=32 Identities=22% Similarity=0.308 Sum_probs=30.1
Q ss_pred cEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (342)
Q Consensus 6 DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~ 37 (342)
.|.|+|.|.+|+++|..|.++|++|.+.|.+.
T Consensus 9 ~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~ 40 (498)
T PRK02006 9 MVLVLGLGESGLAMARWCARHGARLRVADTRE 40 (498)
T ss_pred EEEEEeecHhHHHHHHHHHHCCCEEEEEcCCC
Confidence 69999999999999999999999999999764
No 456
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=91.84 E-value=0.24 Score=44.65 Aligned_cols=32 Identities=28% Similarity=0.462 Sum_probs=30.0
Q ss_pred ccEEEECCCchHHHHHHhhhhCCC-eEEEEcCC
Q 019351 5 YDVIVLGTGLKECILSGLLSVDGL-KVLHMDRN 36 (342)
Q Consensus 5 ~DViIiG~GiaGl~aA~~L~~~G~-~V~vlE~~ 36 (342)
..|+|||+|-.|..+|..|+++|. +++++|..
T Consensus 25 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D 57 (339)
T PRK07688 25 KHVLIIGAGALGTANAEMLVRAGVGKVTIVDRD 57 (339)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 579999999999999999999996 99999984
No 457
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=91.80 E-value=0.28 Score=41.99 Aligned_cols=35 Identities=20% Similarity=0.210 Sum_probs=31.9
Q ss_pred cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCC
Q 019351 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY 38 (342)
Q Consensus 4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~ 38 (342)
...++|+|+|+.+...|..++..|++|+|+|.++.
T Consensus 100 ~~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~ 134 (246)
T TIGR02964 100 APHVVLFGAGHVGRALVRALAPLPCRVTWVDSREA 134 (246)
T ss_pred CCEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcc
Confidence 46899999999999999999999999999997644
No 458
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=91.77 E-value=0.21 Score=41.10 Aligned_cols=30 Identities=23% Similarity=0.244 Sum_probs=27.5
Q ss_pred cEEEECCCchHHHHHHhhhhCCCeEEEEcC
Q 019351 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDR 35 (342)
Q Consensus 6 DViIiG~GiaGl~aA~~L~~~G~~V~vlE~ 35 (342)
.+.|+|+|-.|...|.+|+++|++|++-=+
T Consensus 3 ~~~i~GtGniG~alA~~~a~ag~eV~igs~ 32 (211)
T COG2085 3 IIAIIGTGNIGSALALRLAKAGHEVIIGSS 32 (211)
T ss_pred EEEEeccChHHHHHHHHHHhCCCeEEEecC
Confidence 489999999999999999999999998733
No 459
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=91.76 E-value=0.2 Score=44.32 Aligned_cols=32 Identities=19% Similarity=0.259 Sum_probs=30.0
Q ss_pred cEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (342)
Q Consensus 6 DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~ 37 (342)
+|.|||.|.-|...|..|+++|++|++++++.
T Consensus 3 ~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~ 34 (296)
T PRK15461 3 AIAFIGLGQMGSPMASNLLKQGHQLQVFDVNP 34 (296)
T ss_pred eEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 69999999999999999999999999999863
No 460
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=91.74 E-value=0.23 Score=43.29 Aligned_cols=34 Identities=18% Similarity=0.244 Sum_probs=31.5
Q ss_pred cEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCC
Q 019351 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY 39 (342)
Q Consensus 6 DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~ 39 (342)
+|.+||-|+-|...|.+|.++|++|+|+++....
T Consensus 2 kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~k 35 (286)
T COG2084 2 KIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEK 35 (286)
T ss_pred eEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhh
Confidence 6999999999999999999999999999997544
No 461
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=91.59 E-value=0.28 Score=39.60 Aligned_cols=31 Identities=23% Similarity=0.277 Sum_probs=28.5
Q ss_pred cEEEECCCchHHHHHHhhhhCCC-eEEEEcCC
Q 019351 6 DVIVLGTGLKECILSGLLSVDGL-KVLHMDRN 36 (342)
Q Consensus 6 DViIiG~GiaGl~aA~~L~~~G~-~V~vlE~~ 36 (342)
.|+|||+|-.|...|..|++.|. +++++|..
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D 32 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFD 32 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 48999999999999999999996 69999985
No 462
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=91.55 E-value=0.18 Score=50.37 Aligned_cols=33 Identities=27% Similarity=0.338 Sum_probs=30.5
Q ss_pred ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (342)
Q Consensus 5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~ 37 (342)
..|.|||+|..|...|+.++.+|++|+++|..+
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~ 368 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATP 368 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCCcEEEecCCH
Confidence 359999999999999999999999999999864
No 463
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=91.55 E-value=0.2 Score=47.24 Aligned_cols=34 Identities=18% Similarity=0.188 Sum_probs=31.1
Q ss_pred ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCC
Q 019351 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY 38 (342)
Q Consensus 5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~ 38 (342)
.+|.|||.|.-|...|..|+++|++|.++++...
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~ 35 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTYE 35 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence 3799999999999999999999999999998543
No 464
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=91.54 E-value=0.56 Score=44.28 Aligned_cols=54 Identities=19% Similarity=0.134 Sum_probs=40.4
Q ss_pred ChHHHHHHHHHHHcCcE--EEcCCccceEEEcCCCcEEEEEe-C-Cc---EEEcCEEEECCCC
Q 019351 232 GELPQAFARLSAVYGGT--YMLNKPECKVEFDEEGKVVGVTS-E-GE---TAKCKKVVCDPSY 287 (342)
Q Consensus 232 ~~l~~~l~~~~~~~G~~--i~~~~~V~~i~~~~~~~~~~v~~-~-g~---~~~a~~vI~~~~~ 287 (342)
.++.+-|.+.++..|+. |+++++|++|+.. +++ +.|++ + ++ +..+|+||+|+|.
T Consensus 111 ~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~-~~~-w~V~~~~~~~~~~~~~~d~VIvAtG~ 171 (461)
T PLN02172 111 REVLAYLQDFAREFKIEEMVRFETEVVRVEPV-DGK-WRVQSKNSGGFSKDEIFDAVVVCNGH 171 (461)
T ss_pred HHHHHHHHHHHHHcCCcceEEecCEEEEEeec-CCe-EEEEEEcCCCceEEEEcCEEEEeccC
Confidence 45667777888888887 9999999999876 554 55554 2 22 4579999999984
No 465
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=91.43 E-value=0.32 Score=37.76 Aligned_cols=31 Identities=23% Similarity=0.316 Sum_probs=28.6
Q ss_pred cEEEECCCchHHHHHHhhhhCCC-eEEEEcCC
Q 019351 6 DVIVLGTGLKECILSGLLSVDGL-KVLHMDRN 36 (342)
Q Consensus 6 DViIiG~GiaGl~aA~~L~~~G~-~V~vlE~~ 36 (342)
.|+|||.|-.|...|..|++.|. +++++|..
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d 32 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFD 32 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 48999999999999999999996 79999985
No 466
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=91.42 E-value=0.28 Score=44.18 Aligned_cols=32 Identities=25% Similarity=0.391 Sum_probs=29.8
Q ss_pred ccEEEECCCchHHHHHHhhhhCCC-eEEEEcCC
Q 019351 5 YDVIVLGTGLKECILSGLLSVDGL-KVLHMDRN 36 (342)
Q Consensus 5 ~DViIiG~GiaGl~aA~~L~~~G~-~V~vlE~~ 36 (342)
..|+|||+|-.|..+|..|+++|. +++|+|..
T Consensus 25 ~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D 57 (338)
T PRK12475 25 KHVLIVGAGALGAANAEALVRAGIGKLTIADRD 57 (338)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 579999999999999999999996 89999985
No 467
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=91.39 E-value=0.17 Score=38.42 Aligned_cols=33 Identities=18% Similarity=0.279 Sum_probs=28.8
Q ss_pred cccEEEECCCchHHHHHHhhhhCCCeEEEEcCC
Q 019351 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRN 36 (342)
Q Consensus 4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~ 36 (342)
..+|.|||+|-.|-..|..|.++|+.|.-+..+
T Consensus 10 ~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~sr 42 (127)
T PF10727_consen 10 RLKIGIIGAGRVGTALARALARAGHEVVGVYSR 42 (127)
T ss_dssp --EEEEECTSCCCCHHHHHHHHTTSEEEEESSC
T ss_pred ccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeC
Confidence 368999999999999999999999999887664
No 468
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.35 E-value=0.24 Score=46.94 Aligned_cols=32 Identities=31% Similarity=0.377 Sum_probs=29.8
Q ss_pred ccEEEECCCchHHHHHHhhhhCCCeEEEEcCC
Q 019351 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRN 36 (342)
Q Consensus 5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~ 36 (342)
..|.|+|.|-+|+++|..|.+.|.+|++.|+.
T Consensus 16 ~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~ 47 (473)
T PRK00141 16 GRVLVAGAGVSGRGIAAMLSELGCDVVVADDN 47 (473)
T ss_pred CeEEEEccCHHHHHHHHHHHHCCCEEEEECCC
Confidence 35999999999999999999999999999975
No 469
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=91.21 E-value=0.33 Score=40.58 Aligned_cols=33 Identities=18% Similarity=0.198 Sum_probs=29.8
Q ss_pred cccEEEECCCchHHHHHHhhhhCCC-eEEEEcCC
Q 019351 4 EYDVIVLGTGLKECILSGLLSVDGL-KVLHMDRN 36 (342)
Q Consensus 4 ~~DViIiG~GiaGl~aA~~L~~~G~-~V~vlE~~ 36 (342)
...|+|||+|-.|..+|..|++.|. +++++|..
T Consensus 28 ~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 28 KAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 3579999999999999999999995 69999985
No 470
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=91.11 E-value=0.29 Score=41.35 Aligned_cols=32 Identities=19% Similarity=0.416 Sum_probs=29.6
Q ss_pred ccEEEECCCchHHHHHHhhhhCCC---eEEEEcCC
Q 019351 5 YDVIVLGTGLKECILSGLLSVDGL---KVLHMDRN 36 (342)
Q Consensus 5 ~DViIiG~GiaGl~aA~~L~~~G~---~V~vlE~~ 36 (342)
..|+|+|+|-+|..+|..|.+.|. +|.++++.
T Consensus 26 ~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~ 60 (226)
T cd05311 26 VKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSK 60 (226)
T ss_pred CEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCC
Confidence 479999999999999999999995 59999997
No 471
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=91.05 E-value=0.26 Score=43.32 Aligned_cols=33 Identities=27% Similarity=0.364 Sum_probs=30.5
Q ss_pred ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (342)
Q Consensus 5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~ 37 (342)
..|+|+|.|-.|..+|..|+..|.+|+++++..
T Consensus 152 k~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~ 184 (287)
T TIGR02853 152 SNVMVLGFGRTGMTIARTFSALGARVFVGARSS 184 (287)
T ss_pred CEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 469999999999999999999999999999863
No 472
>PRK05442 malate dehydrogenase; Provisional
Probab=91.03 E-value=0.32 Score=43.54 Aligned_cols=37 Identities=16% Similarity=0.117 Sum_probs=32.2
Q ss_pred CCCcccEEEECC-CchHHHHHHhhhhCCC-------eEEEEcCCC
Q 019351 1 MDEEYDVIVLGT-GLKECILSGLLSVDGL-------KVLHMDRND 37 (342)
Q Consensus 1 m~~~~DViIiG~-GiaGl~aA~~L~~~G~-------~V~vlE~~~ 37 (342)
|....+|+|||+ |..|.++|+.|...|. ++.++|.+.
T Consensus 1 ~~~~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~ 45 (326)
T PRK05442 1 MKAPVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPP 45 (326)
T ss_pred CCCCcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCC
Confidence 777789999998 9999999999998773 799999853
No 473
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=90.98 E-value=0.23 Score=49.44 Aligned_cols=33 Identities=27% Similarity=0.279 Sum_probs=29.8
Q ss_pred ccEEEECCCchHHHHHHhhh-hCCCeEEEEcCCC
Q 019351 5 YDVIVLGTGLKECILSGLLS-VDGLKVLHMDRND 37 (342)
Q Consensus 5 ~DViIiG~GiaGl~aA~~L~-~~G~~V~vlE~~~ 37 (342)
..|+|||+|..|...|..++ ++|++|+++|..+
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~ 338 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTATKAGIPVRIKDINP 338 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCH
Confidence 35999999999999999998 5899999999874
No 474
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.96 E-value=0.32 Score=45.68 Aligned_cols=33 Identities=18% Similarity=0.284 Sum_probs=30.5
Q ss_pred ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (342)
Q Consensus 5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~ 37 (342)
..|.|+|-|.+|++++..|+++|++|++.|...
T Consensus 7 ~~i~v~G~G~sG~s~~~~l~~~G~~v~~~D~~~ 39 (438)
T PRK03806 7 KKVVIIGLGLTGLSCVDFFLARGVTPRVIDTRI 39 (438)
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCC
Confidence 469999999999999999999999999999765
No 475
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.95 E-value=0.24 Score=46.78 Aligned_cols=32 Identities=28% Similarity=0.318 Sum_probs=29.7
Q ss_pred ccEEEECCCchHHHHHHhhhhCCCeEEEEcCC
Q 019351 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRN 36 (342)
Q Consensus 5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~ 36 (342)
..|.|||.|.+|+++|..|.++|++|.+.|..
T Consensus 10 ~~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~ 41 (460)
T PRK01390 10 KTVAVFGLGGSGLATARALVAGGAEVIAWDDN 41 (460)
T ss_pred CEEEEEeecHhHHHHHHHHHHCCCEEEEECCC
Confidence 36899999999999999999999999999965
No 476
>PTZ00117 malate dehydrogenase; Provisional
Probab=90.94 E-value=0.35 Score=43.23 Aligned_cols=34 Identities=15% Similarity=0.154 Sum_probs=30.4
Q ss_pred cccEEEECCCchHHHHHHhhhhCC-CeEEEEcCCC
Q 019351 4 EYDVIVLGTGLKECILSGLLSVDG-LKVLHMDRND 37 (342)
Q Consensus 4 ~~DViIiG~GiaGl~aA~~L~~~G-~~V~vlE~~~ 37 (342)
..+|+|||+|..|.+.|+.|+..| .++.++|.+.
T Consensus 5 ~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~ 39 (319)
T PTZ00117 5 RKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIK 39 (319)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCC
Confidence 358999999999999999999999 6899999854
No 477
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=90.85 E-value=0.15 Score=45.76 Aligned_cols=39 Identities=23% Similarity=0.276 Sum_probs=36.2
Q ss_pred cEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCc
Q 019351 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS 44 (342)
Q Consensus 6 DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~ 44 (342)
..+|||||+.||-.+.--.+.|.+|+++|-.+.+||.+-
T Consensus 213 ~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~mD 251 (506)
T KOG1335|consen 213 KLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGVMD 251 (506)
T ss_pred eEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhccccC
Confidence 689999999999999999999999999999999999853
No 478
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=90.77 E-value=0.38 Score=34.31 Aligned_cols=31 Identities=23% Similarity=0.353 Sum_probs=27.7
Q ss_pred cEEEECCCchHHHHHHhhhhCC---CeEEEE-cCC
Q 019351 6 DVIVLGTGLKECILSGLLSVDG---LKVLHM-DRN 36 (342)
Q Consensus 6 DViIiG~GiaGl~aA~~L~~~G---~~V~vl-E~~ 36 (342)
+|.|||+|-.|.+.+..|.++| .+|.+. +++
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~ 35 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRS 35 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESS
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCc
Confidence 4789999999999999999999 899966 774
No 479
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=90.76 E-value=0.24 Score=49.41 Aligned_cols=33 Identities=33% Similarity=0.257 Sum_probs=30.0
Q ss_pred ccEEEECCCchHHHHHHhhh-hCCCeEEEEcCCC
Q 019351 5 YDVIVLGTGLKECILSGLLS-VDGLKVLHMDRND 37 (342)
Q Consensus 5 ~DViIiG~GiaGl~aA~~L~-~~G~~V~vlE~~~ 37 (342)
..|+|||+|..|...|..++ .+|++|+++|..+
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~ 343 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINP 343 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCH
Confidence 35999999999999999998 8899999999854
No 480
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=90.70 E-value=0.38 Score=41.08 Aligned_cols=33 Identities=24% Similarity=0.377 Sum_probs=29.8
Q ss_pred cccEEEECCCchHHHHHHhhhhCC-CeEEEEcCC
Q 019351 4 EYDVIVLGTGLKECILSGLLSVDG-LKVLHMDRN 36 (342)
Q Consensus 4 ~~DViIiG~GiaGl~aA~~L~~~G-~~V~vlE~~ 36 (342)
...|+|||+|-.|..+|..|++.| .+++++|..
T Consensus 24 ~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D 57 (240)
T TIGR02355 24 ASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFD 57 (240)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 368999999999999999999999 589999885
No 481
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=90.64 E-value=0.37 Score=42.81 Aligned_cols=32 Identities=22% Similarity=0.415 Sum_probs=28.4
Q ss_pred cEEEECCCchHHHHHHhhhhCCC--eEEEEcCCC
Q 019351 6 DVIVLGTGLKECILSGLLSVDGL--KVLHMDRND 37 (342)
Q Consensus 6 DViIiG~GiaGl~aA~~L~~~G~--~V~vlE~~~ 37 (342)
+|+|||+|..|.++|+.|...|. ++.++|.+.
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~ 34 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNE 34 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 58999999999999999999884 799999753
No 482
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=90.63 E-value=0.33 Score=44.67 Aligned_cols=33 Identities=18% Similarity=0.110 Sum_probs=30.5
Q ss_pred ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (342)
Q Consensus 5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~ 37 (342)
-.|+|+|.|..|..+|..|+..|.+|+|+|..+
T Consensus 196 k~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp 228 (406)
T TIGR00936 196 KTVVVAGYGWCGKGIAMRARGMGARVIVTEVDP 228 (406)
T ss_pred CEEEEECCCHHHHHHHHHHhhCcCEEEEEeCCh
Confidence 479999999999999999999999999998765
No 483
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=90.54 E-value=0.28 Score=46.18 Aligned_cols=32 Identities=25% Similarity=0.396 Sum_probs=30.1
Q ss_pred cEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (342)
Q Consensus 6 DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~ 37 (342)
+|+|+|+|..|...|..|.+.|++|+++|+++
T Consensus 2 ~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~ 33 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLSGENNDVTVIDTDE 33 (453)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEECCH
Confidence 69999999999999999999999999999854
No 484
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=90.47 E-value=0.36 Score=42.90 Aligned_cols=33 Identities=27% Similarity=0.407 Sum_probs=29.5
Q ss_pred ccEEEECCCchHHHHHHhhhhCCC--eEEEEcCCC
Q 019351 5 YDVIVLGTGLKECILSGLLSVDGL--KVLHMDRND 37 (342)
Q Consensus 5 ~DViIiG~GiaGl~aA~~L~~~G~--~V~vlE~~~ 37 (342)
.+|+|||+|..|.+.|..|++.|. +|.+++++.
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~ 41 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSA 41 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCH
Confidence 479999999999999999999994 899998863
No 485
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=90.42 E-value=0.41 Score=41.01 Aligned_cols=33 Identities=27% Similarity=0.358 Sum_probs=30.0
Q ss_pred cccEEEECCCchHHHHHHhhhhCC-CeEEEEcCC
Q 019351 4 EYDVIVLGTGLKECILSGLLSVDG-LKVLHMDRN 36 (342)
Q Consensus 4 ~~DViIiG~GiaGl~aA~~L~~~G-~~V~vlE~~ 36 (342)
...|+|||+|-.|..+|..|+..| .+++++|..
T Consensus 32 ~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D 65 (245)
T PRK05690 32 AARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFD 65 (245)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 368999999999999999999999 589999885
No 486
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=90.40 E-value=0.31 Score=50.17 Aligned_cols=33 Identities=21% Similarity=0.132 Sum_probs=30.6
Q ss_pred cEEEECCCchHHHHHHhhhhCCCeEEEEcCCCC
Q 019351 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY 38 (342)
Q Consensus 6 DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~ 38 (342)
+|+|||||..|+=+|..+.+.|.+|+++.+++.
T Consensus 449 ~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~~ 481 (944)
T PRK12779 449 EVFVIGGGNTAMDAARTAKRLGGNVTIVYRRTK 481 (944)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCEEEEEEecCc
Confidence 699999999999999999999999999988753
No 487
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=90.38 E-value=0.99 Score=42.97 Aligned_cols=42 Identities=29% Similarity=0.371 Sum_probs=37.0
Q ss_pred cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCC--------CCCCcCcc
Q 019351 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND--------YYGGESSS 45 (342)
Q Consensus 4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~--------~~GG~~~t 45 (342)
+||++|||+|.+|+.||..+++.|++|+++|+.. .+||.|..
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~~~~~~~~~~~~GGtc~n 51 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFVTPTPLGTRWGIGGTCVN 51 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCcceeccccccc
Confidence 5899999999999999999999999999999741 58887643
No 488
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=90.37 E-value=0.45 Score=39.45 Aligned_cols=33 Identities=18% Similarity=0.324 Sum_probs=30.0
Q ss_pred cccEEEECCCchHHHHHHhhhhCCC-eEEEEcCC
Q 019351 4 EYDVIVLGTGLKECILSGLLSVDGL-KVLHMDRN 36 (342)
Q Consensus 4 ~~DViIiG~GiaGl~aA~~L~~~G~-~V~vlE~~ 36 (342)
...|+|||.|-.|..+|..|++.|. +++++|..
T Consensus 21 ~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 21 NSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 3679999999999999999999995 89999984
No 489
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=90.35 E-value=0.35 Score=42.84 Aligned_cols=32 Identities=16% Similarity=0.247 Sum_probs=29.9
Q ss_pred cEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (342)
Q Consensus 6 DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~ 37 (342)
+|.|||.|..|...|..|+++|++|.+++++.
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~ 33 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQ 33 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCCCEEEEEECCH
Confidence 59999999999999999999999999998864
No 490
>PRK08328 hypothetical protein; Provisional
Probab=90.31 E-value=0.4 Score=40.68 Aligned_cols=32 Identities=25% Similarity=0.332 Sum_probs=29.1
Q ss_pred ccEEEECCCchHHHHHHhhhhCC-CeEEEEcCC
Q 019351 5 YDVIVLGTGLKECILSGLLSVDG-LKVLHMDRN 36 (342)
Q Consensus 5 ~DViIiG~GiaGl~aA~~L~~~G-~~V~vlE~~ 36 (342)
..|+|||+|-.|..+|..|++.| .+++++|..
T Consensus 28 ~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D 60 (231)
T PRK08328 28 AKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQ 60 (231)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 57999999999999999999999 579999874
No 491
>PLN02602 lactate dehydrogenase
Probab=90.28 E-value=0.47 Score=42.92 Aligned_cols=33 Identities=21% Similarity=0.264 Sum_probs=29.8
Q ss_pred ccEEEECCCchHHHHHHhhhhCCC--eEEEEcCCC
Q 019351 5 YDVIVLGTGLKECILSGLLSVDGL--KVLHMDRND 37 (342)
Q Consensus 5 ~DViIiG~GiaGl~aA~~L~~~G~--~V~vlE~~~ 37 (342)
.+|+|||+|..|.++|+.|+..|. ++.++|.+.
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~ 72 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNP 72 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCC
Confidence 699999999999999999998884 799999854
No 492
>PRK06849 hypothetical protein; Provisional
Probab=90.24 E-value=0.47 Score=43.76 Aligned_cols=38 Identities=24% Similarity=0.348 Sum_probs=34.1
Q ss_pred CCCcccEEEECCCc-hHHHHHHhhhhCCCeEEEEcCCCC
Q 019351 1 MDEEYDVIVLGTGL-KECILSGLLSVDGLKVLHMDRNDY 38 (342)
Q Consensus 1 m~~~~DViIiG~Gi-aGl~aA~~L~~~G~~V~vlE~~~~ 38 (342)
|+....|+|+|++. .|+..|..|.++|++|++++....
T Consensus 1 ~~~~~~VLI~G~~~~~~l~iar~l~~~G~~Vi~~d~~~~ 39 (389)
T PRK06849 1 MNTKKTVLITGARAPAALELARLFHNAGHTVILADSLKY 39 (389)
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCch
Confidence 66677899999998 699999999999999999999754
No 493
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=90.19 E-value=0.45 Score=37.38 Aligned_cols=32 Identities=25% Similarity=0.365 Sum_probs=28.9
Q ss_pred ccEEEECCCchHHHHHHhhhhCC-CeEEEEcCC
Q 019351 5 YDVIVLGTGLKECILSGLLSVDG-LKVLHMDRN 36 (342)
Q Consensus 5 ~DViIiG~GiaGl~aA~~L~~~G-~~V~vlE~~ 36 (342)
..++|+|+|..|...|..|.+.| .+|.+++++
T Consensus 20 ~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~ 52 (155)
T cd01065 20 KKVLILGAGGAARAVAYALAELGAAKIVIVNRT 52 (155)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 47999999999999999999996 889999875
No 494
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=90.19 E-value=0.49 Score=38.91 Aligned_cols=32 Identities=28% Similarity=0.391 Sum_probs=28.8
Q ss_pred ccEEEECC-CchHHHHHHhhhhCCCeEEEEcCC
Q 019351 5 YDVIVLGT-GLKECILSGLLSVDGLKVLHMDRN 36 (342)
Q Consensus 5 ~DViIiG~-GiaGl~aA~~L~~~G~~V~vlE~~ 36 (342)
..++|+|| |-.|..+|..|++.|.+|+++.++
T Consensus 29 ~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~ 61 (194)
T cd01078 29 KTAVVLGGTGPVGQRAAVLLAREGARVVLVGRD 61 (194)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 47999996 999999999999999999999764
No 495
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=90.15 E-value=1 Score=39.99 Aligned_cols=55 Identities=20% Similarity=0.207 Sum_probs=43.5
Q ss_pred ChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCcEEEcCEEEECCCCCC
Q 019351 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLP 289 (342)
Q Consensus 232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~~~~ 289 (342)
..|.+.+.+.++..|+++.. ..|.+++.. ++ ...|+++.++++|+.||+|+|..+
T Consensus 61 ~~L~~~~~~~a~~~~~~~~~-~~v~~v~~~-~~-~F~v~t~~~~~~ak~vIiAtG~~~ 115 (305)
T COG0492 61 PELMEQMKEQAEKFGVEIVE-DEVEKVELE-GG-PFKVKTDKGTYEAKAVIIATGAGA 115 (305)
T ss_pred HHHHHHHHHHHhhcCeEEEE-EEEEEEeec-Cc-eEEEEECCCeEEEeEEEECcCCcc
Confidence 46788888888888999888 777777765 32 577888666699999999998764
No 496
>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.12 E-value=0.33 Score=44.90 Aligned_cols=30 Identities=20% Similarity=0.170 Sum_probs=27.8
Q ss_pred cEEEECCCchHHHHHHhhhhCCCeEEEEcCC
Q 019351 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRN 36 (342)
Q Consensus 6 DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~ 36 (342)
.|.|+|.|-+|+++|..|. +|.+|++.|..
T Consensus 2 ~v~v~G~G~sG~a~a~~L~-~G~~V~~~D~~ 31 (401)
T PRK03815 2 KISLFGYGKTTKALAKFLK-KFGGVDIFDDK 31 (401)
T ss_pred eEEEEeECHHHHHHHHHHh-CCCeEEEEcCC
Confidence 4899999999999999999 99999999954
No 497
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=90.09 E-value=0.41 Score=41.72 Aligned_cols=32 Identities=19% Similarity=0.234 Sum_probs=29.3
Q ss_pred ccEEEECCCchHHHHHHhhhhCCCeEEEEcCC
Q 019351 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRN 36 (342)
Q Consensus 5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~ 36 (342)
..++|+|+|-+|.++|..|++.|.+|+|+.+.
T Consensus 118 k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~ 149 (270)
T TIGR00507 118 QRVLIIGAGGAARAVALPLLKADCNVIIANRT 149 (270)
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 36899999999999999999999999999874
No 498
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=89.96 E-value=0.36 Score=38.18 Aligned_cols=33 Identities=21% Similarity=0.177 Sum_probs=26.8
Q ss_pred ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (342)
Q Consensus 5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~ 37 (342)
..++|+|=|..|-.+|..|+..|.+|+|.|..+
T Consensus 24 k~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DP 56 (162)
T PF00670_consen 24 KRVVVIGYGKVGKGIARALRGLGARVTVTEIDP 56 (162)
T ss_dssp SEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSH
T ss_pred CEEEEeCCCcccHHHHHHHhhCCCEEEEEECCh
Confidence 369999999999999999999999999999964
No 499
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=89.84 E-value=0.34 Score=47.05 Aligned_cols=33 Identities=15% Similarity=0.347 Sum_probs=31.0
Q ss_pred ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (342)
Q Consensus 5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~ 37 (342)
-+++|+|.|-.|-..|..|.++|++|+++|+++
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~ 450 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSR 450 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEECCH
Confidence 468999999999999999999999999999974
No 500
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=89.82 E-value=0.41 Score=41.59 Aligned_cols=33 Identities=18% Similarity=0.245 Sum_probs=29.6
Q ss_pred ccEEEECCCchHHHHHHhhhhCC---CeEEEEcCCC
Q 019351 5 YDVIVLGTGLKECILSGLLSVDG---LKVLHMDRND 37 (342)
Q Consensus 5 ~DViIiG~GiaGl~aA~~L~~~G---~~V~vlE~~~ 37 (342)
.+|.|||+|..|.+.|..|.++| .+|.+++++.
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~ 38 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSP 38 (267)
T ss_pred CEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCH
Confidence 36999999999999999999999 7899999863
Done!