BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019353
(342 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2E6R|A Chain A, Solution Structure Of The Phd Domain In Smcy Protein
Length = 92
Score = 62.4 bits (150), Expect = 3e-10, Method: Composition-based stats.
Identities = 24/49 (48%), Positives = 30/49 (61%)
Query: 26 DDSRCEKCGSGDFPDELLLCDKCDKGFHLFCLRPILVSVPKGSWFCPSC 74
D C+ C GD D+LL CD CD +H+FCL P L +P+G W CP C
Sbjct: 15 DSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKC 63
>pdb|1F62|A Chain A, Wstf-Phd
Length = 51
Score = 61.2 bits (147), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 26/48 (54%), Positives = 33/48 (68%)
Query: 28 SRCEKCGSGDFPDELLLCDKCDKGFHLFCLRPILVSVPKGSWFCPSCS 75
+RC+ C D+L+LCD+C+K FHLFCLRP L VP G W CP+C
Sbjct: 1 ARCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQ 48
>pdb|2YSM|A Chain A, Solution Structure Of The First And Second Phd Domain From
MyeloidLYMPHOID OR MIXED-Lineage Leukemia Protein 3
Homolog
Length = 111
Score = 58.2 bits (139), Expect = 7e-09, Method: Composition-based stats.
Identities = 20/45 (44%), Positives = 29/45 (64%)
Query: 30 CEKCGSGDFPDELLLCDKCDKGFHLFCLRPILVSVPKGSWFCPSC 74
C+ C ++L+CD CDKG+H FCL+P++ SVP W C +C
Sbjct: 57 CQNCKQSGEDSKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNC 101
Score = 33.9 bits (76), Expect = 0.15, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Query: 28 SRCEKCGS-GDFPDELLLCDKCDKGFHLFCLRPILVSVPKGSWFCPSC 74
+ C C S GD D+ C C + +H CL + + + W CP C
Sbjct: 8 ANCAVCDSPGDLLDQFF-CTTCGQHYHGMCLDIAVTPLKRAGWQCPEC 54
>pdb|3ASK|A Chain A, Structure Of Uhrf1 In Complex With Histone Tail
pdb|3ASK|B Chain B, Structure Of Uhrf1 In Complex With Histone Tail
pdb|3ASK|C Chain C, Structure Of Uhrf1 In Complex With Histone Tail
pdb|3ASK|D Chain D, Structure Of Uhrf1 In Complex With Histone Tail
Length = 226
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 30 CEKCGSGDFPDELLLCDKCDKGFHLFCLRPILVSVP-KGSWFCPSC 74
C CG PD+ L+CD+CD FH++CL P L SVP + W+CP C
Sbjct: 177 CHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPEC 222
>pdb|4GY5|A Chain A, Crystal Structure Of The Tandem Tudor Domain And Plant
Homeodomain Of Uhrf1 With Histone H3k9me3
pdb|4GY5|B Chain B, Crystal Structure Of The Tandem Tudor Domain And Plant
Homeodomain Of Uhrf1 With Histone H3k9me3
pdb|4GY5|C Chain C, Crystal Structure Of The Tandem Tudor Domain And Plant
Homeodomain Of Uhrf1 With Histone H3k9me3
pdb|4GY5|D Chain D, Crystal Structure Of The Tandem Tudor Domain And Plant
Homeodomain Of Uhrf1 With Histone H3k9me3
Length = 241
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 30 CEKCGSGDFPDELLLCDKCDKGFHLFCLRPILVSVP-KGSWFCPSC 74
C CG PD+ L+CD+CD FH++CL P L SVP + W+CP C
Sbjct: 193 CHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPEC 238
>pdb|3ZVZ|B Chain B, Phd Finger Of Human Uhrf1
Length = 57
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 30 CEKCGSGDFPDELLLCDKCDKGFHLFCLRPILVSVP-KGSWFCPSC 74
C CG PD+ L+CD+CD FH++CL P L SVP + W+CP C
Sbjct: 8 CHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPEC 53
>pdb|2KWJ|A Chain A, Solution Structures Of The Double Phd Fingers Of Human
Transcriptional Protein Dpf3 Bound To A Histone Peptide
Containing Acetylation At Lysine 14
pdb|2KWK|A Chain A, Solution Structures Of The Double Phd Fingers Of Human
Transcriptional Protein Dpf3b Bound To A H3 Peptide Wild
Type
pdb|2KWN|A Chain A, Solution Structure Of The Double Phd (Plant Homeodomain)
Fingers Of Human Transcriptional Protein Dpf3b Bound To
A Histone H4 Peptide Containing Acetylation At Lysine 16
pdb|2KWO|A Chain A, Solution Structure Of The Double Phd (Plant Homeodomain)
Fingers Of Human Transcriptional Protein Dpf3b Bound To
A Histone H4 Peptide Containing N-Terminal Acetylation
At Serine 1
Length = 114
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 34/56 (60%)
Query: 19 TYESPDDDDSRCEKCGSGDFPDELLLCDKCDKGFHLFCLRPILVSVPKGSWFCPSC 74
TY+ + C CG+ + D+LL CD CD+G+H++CL P + P+GSW C C
Sbjct: 50 TYKWQCIECKSCILCGTSENDDQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLC 105
>pdb|3ZVY|A Chain A, Phd Finger Of Human Uhrf1 In Complex With Unmodified
Histone H3 N-Terminal Tail
pdb|3ZVY|B Chain B, Phd Finger Of Human Uhrf1 In Complex With Unmodified
Histone H3 N-Terminal Tail
Length = 72
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 30 CEKCGSGDFPDELLLCDKCDKGFHLFCLRPILVSVP-KGSWFCPSC 74
C CG PD+ L+CD+CD FH++CL P L SVP + W+CP C
Sbjct: 23 CHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPEC 68
>pdb|3SOU|A Chain A, Structure Of Uhrf1 Phd Finger In Complex With Histone H3
1-9 Peptide
pdb|3SOU|B Chain B, Structure Of Uhrf1 Phd Finger In Complex With Histone H3
1-9 Peptide
pdb|3SOW|A Chain A, Structure Of Uhrf1 Phd Finger In Complex With Histone
H3k4me3 1-9 Peptide
pdb|3SOW|B Chain B, Structure Of Uhrf1 Phd Finger In Complex With Histone
H3k4me3 1-9 Peptide
pdb|3SOX|A Chain A, Structure Of Uhrf1 Phd Finger In The Free Form
pdb|3SOX|B Chain B, Structure Of Uhrf1 Phd Finger In The Free Form
pdb|3ASL|A Chain A, Structure Of Uhrf1 In Complex With Histone Tail
Length = 70
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 30 CEKCGSGDFPDELLLCDKCDKGFHLFCLRPILVSVP-KGSWFCPSC 74
C CG PD+ L+CD+CD FH++CL P L SVP + W+CP C
Sbjct: 21 CHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPEC 66
>pdb|2LGG|A Chain A, Structure Of Phd Domain Of Uhrf1 In Complex With H3
Peptide
pdb|2LGK|A Chain A, Nmr Structure Of Uhrf1 Phd Domains In A Complex With
Histone H3 Peptide
pdb|2LGL|A Chain A, Nmr Structure Of The Uhrf1 Phd Domain
Length = 69
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 30 CEKCGSGDFPDELLLCDKCDKGFHLFCLRPILVSVP-KGSWFCPSC 74
C CG PD+ L+CD+CD FH++CL P L SVP + W+CP C
Sbjct: 21 CHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPEC 66
>pdb|3SHB|A Chain A, Crystal Structure Of Phd Domain Of Uhrf1
Length = 77
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 30 CEKCGSGDFPDELLLCDKCDKGFHLFCLRPILVSVP-KGSWFCPSC 74
C CG PD+ L+CD+CD FH++CL P L SVP + W+CP C
Sbjct: 29 CHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPEC 74
>pdb|2L5U|A Chain A, Structure Of The First Phd Finger (Phd1) From Chd4
(Mi2b)
Length = 61
Score = 51.6 bits (122), Expect = 7e-07, Method: Composition-based stats.
Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 5/56 (8%)
Query: 19 TYESPDDDDSRCEKCGSGDFPDELLLCDKCDKGFHLFCLRPILVSVPKGSWFCPSC 74
+YE+ D CE C G E++LCD C + +H+ CL P + P+G W CP C
Sbjct: 5 SYET--DHQDYCEVCQQGG---EIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHC 55
>pdb|3T6R|A Chain A, Structure Of Uhrf1 In Complex With Unmodified H3
N-Terminal Tail
pdb|3T6R|B Chain B, Structure Of Uhrf1 In Complex With Unmodified H3
N-Terminal Tail
Length = 72
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 30 CEKCGSGDFPDELLLCDKCDKGFHLFCLRPILVSVP-KGSWFCPSC 74
C CG PD+ L+CD+CD FH++CL P L SVP + W+CP C
Sbjct: 26 CHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPEC 71
>pdb|2YQL|A Chain A, Solution Structure Of The Phd Domain In Phd Finger
Protein 21a
Length = 56
Score = 50.8 bits (120), Expect = 1e-06, Method: Composition-based stats.
Identities = 23/51 (45%), Positives = 30/51 (58%), Gaps = 6/51 (11%)
Query: 24 DDDDSRCEKCGSGDFPDELLLCDKCDKGFHLFCLRPILVSVPKGSWFCPSC 74
+D S C K G +LL+CD C + +HL CL P L ++PKG W CP C
Sbjct: 9 EDFCSVCRKSG------QLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRC 53
>pdb|2KFT|A Chain A, Nmr Solution Structure Of The First Phd Finger Domain Of
Human Autoimmune Regulator (Aire) In Complex With
Histone H3(1-20cys) Peptide
Length = 56
Score = 49.7 bits (117), Expect = 3e-06, Method: Composition-based stats.
Identities = 21/49 (42%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 26 DDSRCEKCGSGDFPDELLLCDKCDKGFHLFCLRPILVSVPKGSWFCPSC 74
++ C C G EL+ CD C + FHL CL P L +P G+W C SC
Sbjct: 4 NEDECAVCRDGG---ELICCDGCPRAFHLACLSPPLREIPSGTWRCSSC 49
>pdb|1XWH|A Chain A, Nmr Structure Of The First Phd Finger Of Autoimmune
Regulator Protein (Aire1): Insights Into Apeced
pdb|2KE1|A Chain A, Molecular Basis Of Non-Modified Histone H3 Tail
Recognition By The First Phd Finger Of Autoimmune
Regulator
Length = 66
Score = 49.7 bits (117), Expect = 3e-06, Method: Composition-based stats.
Identities = 21/49 (42%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 26 DDSRCEKCGSGDFPDELLLCDKCDKGFHLFCLRPILVSVPKGSWFCPSC 74
++ C C G EL+ CD C + FHL CL P L +P G+W C SC
Sbjct: 7 NEDECAVCRDGG---ELICCDGCPRAFHLACLSPPLREIPSGTWRCSSC 52
>pdb|3OPE|A Chain A, Structural Basis Of Auto-Inhibitory Mechanism Of Histone
Methyltransferase
pdb|3OPE|B Chain B, Structural Basis Of Auto-Inhibitory Mechanism Of Histone
Methyltransferase
Length = 222
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 64/139 (46%), Gaps = 17/139 (12%)
Query: 198 CKHMMNRGEWPPLMVEYDPKE-GFTVQADRFIKDLTIITEYVGDV---DYLNNR--ENDD 251
C + R EW + + +E G+ ++ +K I EY+G+V NR E
Sbjct: 63 CNQRIQRHEWVQCLERFRAEEKGWGIRTKEPLKAGQFIIEYLGEVVSEQEFRNRMIEQYH 122
Query: 252 GDSTMTLLHASNPAQSLVVCPYKHGNIARFVNGINNHTADGKKKQNLKCVRYNVNGECRV 311
S L N +V+ Y+ GN ARF+N H+ D N + +++VNG R+
Sbjct: 123 NHSDHYCL---NLDSGMVIDSYRMGNEARFIN----HSCD----PNCEMQKWSVNGVYRI 171
Query: 312 LLVANRDIAKGERLYYDYN 330
L A +D+ G L YDYN
Sbjct: 172 GLYALKDMPAGTELTYDYN 190
>pdb|3U5M|A Chain A, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|B Chain B, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|C Chain C, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|D Chain D, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|E Chain E, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|F Chain F, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|G Chain G, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|H Chain H, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|I Chain I, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|J Chain J, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|K Chain K, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|L Chain L, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5N|A Chain A, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-20) K9me3k14ac Histone Peptide
pdb|3U5N|B Chain B, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-20) K9me3k14ac Histone Peptide
pdb|3U5O|A Chain A, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|B Chain B, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|C Chain C, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|D Chain D, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|E Chain E, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|F Chain F, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|G Chain G, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|H Chain H, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5P|A Chain A, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|B Chain B, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|C Chain C, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|D Chain D, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|E Chain E, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|F Chain F, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|G Chain G, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|H Chain H, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
Length = 207
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 43/92 (46%), Gaps = 5/92 (5%)
Query: 25 DDDSRCEKCGSGDFPDELLLCDKCDKGFHLFCLRPILVSVPKGSWFCPSCSHHKRPKPFP 84
DDD + C +LL C+KC K FHL C P L+S P G W C C +P+
Sbjct: 2 DDDPNEDWCAVCQNGGDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIGKPE--- 58
Query: 85 LVQTKIIDFFRIQRSADLTQKLTPDNLRKRKR 116
V+ D + + Q L+P + RK +R
Sbjct: 59 -VEYD-CDNLQHSKKGKTAQGLSPVDQRKCER 88
>pdb|3O33|A Chain A, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O33|B Chain B, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O33|C Chain C, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O33|D Chain D, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O34|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(13-32)k23ac Peptide
pdb|3O35|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(23-31)k27ac Peptide
pdb|3O35|B Chain B, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(23-31)k27ac Peptide
pdb|3O36|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H4(14-19)k16ac Peptide
pdb|3O36|B Chain B, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H4(14-19)k16ac Peptide
pdb|3O37|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
pdb|3O37|B Chain B, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
pdb|3O37|C Chain C, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
pdb|3O37|D Chain D, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
Length = 184
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 32/60 (53%), Gaps = 5/60 (8%)
Query: 22 SPDDDDSRCEKCGSGDFPDELLLCDKCDKGFHLFCLRPILVSVPKGSWFCPSCSHHKRPK 81
SP++D C C +G ELL C+KC K FHL C P L + P G W C C +P+
Sbjct: 1 SPNED--WCAVCQNGG---ELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLSKPE 55
>pdb|3V43|A Chain A, Crystal Structure Of Moz
Length = 112
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Query: 30 CEKCGS----GDFPDELLLCDKCDKGFHLFCLRPILVSVPKGSWFCPSC 74
C+ C S G D +L CD CD+GFH+ C P L +PKG W C C
Sbjct: 61 CKTCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQIC 109
>pdb|2LN0|A Chain A, Structure Of Moz
Length = 110
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Query: 30 CEKCGS----GDFPDELLLCDKCDKGFHLFCLRPILVSVPKGSWFCPSC 74
C+ C S G D +L CD CD+GFH+ C P L +PKG W C C
Sbjct: 59 CKTCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQIC 107
>pdb|1MM3|A Chain A, Solution Structure Of The 2nd Phd Domain From Mi2b With
C- Terminal Loop Replaced By Corresponding Loop From
Wstf
Length = 61
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 22/35 (62%)
Query: 41 ELLLCDKCDKGFHLFCLRPILVSVPKGSWFCPSCS 75
ELL CD C +H+ CLRP L VP G W CP C+
Sbjct: 20 ELLCCDTCPSSYHIHCLRPALYEVPDGEWQCPRCT 54
>pdb|2PUY|A Chain A, Crystal Structure Of The Bhc80 Phd Finger
pdb|2PUY|B Chain B, Crystal Structure Of The Bhc80 Phd Finger
Length = 60
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 24/34 (70%)
Query: 41 ELLLCDKCDKGFHLFCLRPILVSVPKGSWFCPSC 74
+LL+CD C + +HL CL P L ++PKG W CP C
Sbjct: 16 QLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRC 49
>pdb|2E6S|A Chain A, Solution Structure Of The Phd Domain In Ring Finger
Protein 107
Length = 77
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 30 CEKCGSGDFPDELLLCDKCDKGFHLFCLRPILVSVPKGS-WFCPSC 74
C CG P+ LLCD+C+ +H++CL P L VP+ W+CPSC
Sbjct: 29 CRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSC 74
>pdb|1MM2|A Chain A, Solution Structure Of The 2nd Phd Domain From Mi2b
pdb|2L75|A Chain A, Solution Structure Of Chd4-Phd2 In Complex With H3k9me3
Length = 61
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 21/35 (60%)
Query: 41 ELLLCDKCDKGFHLFCLRPILVSVPKGSWFCPSCS 75
ELL CD C +H+ CL P L +P G W CP C+
Sbjct: 20 ELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCT 54
>pdb|1FP0|A Chain A, Solution Structure Of The Phd Domain From The Kap-1
Corepressor
Length = 88
Score = 41.2 bits (95), Expect = 8e-04, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 24 DDDDSRCEKCGSGDFPDELLLCDKCDKGFHLFCLRPILVSVPKGSWFCPSC 74
DD + C C P +L++C++C+ FHL C P L VP W C C
Sbjct: 22 DDSATICRVCQK---PGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLC 69
>pdb|2W5Y|A Chain A, Binary Complex Of The Mixed Lineage Leukaemia (Mll1) Set
Domain With The Cofactor Product S-Adenosylhomocysteine.
pdb|2W5Z|A Chain A, Ternary Complex Of The Mixed Lineage Leukaemia (Mll1) Set
Domain With The Cofactor Product S-Adenosylhomocysteine
And Histone Peptide
Length = 192
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 50/116 (43%), Gaps = 10/116 (8%)
Query: 216 PKEGFTVQADRFIKDLTIITEYVGDV--DYLNNRENDDGDSTMTLLHASNPAQSLVVCPY 273
P G + R I ++ EY G+V ++ DS + S VV
Sbjct: 60 PIHGRGLFCKRNIDAGEMVIEYAGNVIRSIQTDKREKYYDSKGIGCYMFRIDDSEVVDAT 119
Query: 274 KHGNIARFVNGINNHTADGKKKQNLKCVRYNVNGECRVLLVANRDIAKGERLYYDY 329
HGN ARF+N H+ + N N++G+ +++ A R I +GE L YDY
Sbjct: 120 MHGNAARFIN----HSCE----PNCYSRVINIDGQKHIVIFAMRKIYRGEELTYDY 167
>pdb|3OOI|A Chain A, Crystal Structure Of Human Histone-Lysine
N-Methyltransferase Nsd1 Set Domain In Complex With
S-Adenosyl-L-Methionine
Length = 232
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 59/134 (44%), Gaps = 11/134 (8%)
Query: 200 HMMNRGEWPPLMVEYDPKEGFTVQADRFIKDLTIITEYVG---DVDYLNNRENDDGDSTM 256
++ ++P + + + G+ ++ IK + EYVG D + R + +
Sbjct: 84 QCFSKRQYPEVEIFRTLQRGWGLRTKTDIKKGEFVNEYVGELIDEEECRARIRYAQEHDI 143
Query: 257 TLLHASNPAQSLVVCPYKHGNIARFVNGINNHTADGKKKQNLKCVRYNVNGECRVLLVAN 316
T + + ++ GN ARF+N H + N + +++VNG+ RV L A
Sbjct: 144 TNFYMLTLDKDRIIDAGPKGNYARFMN----HCC----QPNCETQKWSVNGDTRVGLFAL 195
Query: 317 RDIAKGERLYYDYN 330
DI G L ++YN
Sbjct: 196 SDIKAGTELTFNYN 209
>pdb|2RO1|A Chain A, Nmr Solution Structures Of Human Kap1 Phd
Finger-Bromodomain
Length = 189
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 36/79 (45%), Gaps = 5/79 (6%)
Query: 39 PDELLLCDKCDKGFHLFCLRPILVSVPKGSWFCPSCSHHKRPKPFPLVQTKIIDFFRIQR 98
P +L++C++C+ FHL C P L VP W C C H P L +
Sbjct: 11 PGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLC--HVLPD---LKEEDGSLSLDGAD 65
Query: 99 SADLTQKLTPDNLRKRKRA 117
S + KL+P N RK +R
Sbjct: 66 STGVVAKLSPANQRKCERV 84
>pdb|2K16|A Chain A, Solution Structure Of The Free Taf3 Phd Domain
pdb|2K17|A Chain A, Solution Structure Of The Taf3 Phd Domain In Complex
With A H3k4me3 Peptide
Length = 75
Score = 37.0 bits (84), Expect = 0.015, Method: Composition-based stats.
Identities = 14/47 (29%), Positives = 22/47 (46%)
Query: 30 CEKCGSGDFPDELLLCDKCDKGFHLFCLRPILVSVPKGSWFCPSCSH 76
C C D ++ CD CD +H C+ + + WFCP C++
Sbjct: 21 CPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCAN 67
>pdb|2YT5|A Chain A, Solution Structure Of The Phd Domain Of Metal-Response
Element-Binding Transcription Factor 2
Length = 66
Score = 37.0 bits (84), Expect = 0.016, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 39 PDELLLCDKCDKGFHLFCLRPILVSVPKGS---WFCPSC 74
P+E+++CDKC +G+H C P + S S W C C
Sbjct: 20 PNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQC 58
>pdb|1WEN|A Chain A, Solution Structure Of Phd Domain In Ing1-Like Protein
Bac25079
Length = 71
Score = 37.0 bits (84), Expect = 0.017, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 5/43 (11%)
Query: 41 ELLLCDKCD---KGFHLFCLRPILVSVPKGSWFCPSCSHHKRP 80
E++ CD D + FH C+ L + P+G WFCP CS P
Sbjct: 28 EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQESGP 68
>pdb|4GND|A Chain A, Crystal Structure Of Nsd3 Tandem Phd5-C5hch Domains
pdb|4GND|C Chain C, Crystal Structure Of Nsd3 Tandem Phd5-C5hch Domains
pdb|4GNE|A Chain A, Crystal Structure Of Nsd3 Tandem Phd5-C5hch Domains
Complexed With H3 Peptide 1-7
pdb|4GNF|A Chain A, Crystal Structure Of Nsd3 Tandem Phd5-C5hch Domains
Complexed With H3 Peptide 1-15
pdb|4GNG|A Chain A, Crystal Structure Of Nsd3 Tandem Phd5-C5hch Domains
Complexed With H3k9me3 Peptide
pdb|4GNG|D Chain D, Crystal Structure Of Nsd3 Tandem Phd5-C5hch Domains
Complexed With H3k9me3 Peptide
Length = 107
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 29/59 (49%), Gaps = 7/59 (11%)
Query: 16 RPITYESPDDDDSRCEKCGSGDFPDELLLCDK--CDKGFHLFCLRPILVSVPKGSWFCP 72
R I E + C +CG G EL++CDK C K +HL CL L P G W CP
Sbjct: 4 RKIKTEPKQMHEDYCFQCGDGG---ELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECP 57
>pdb|2LRI|C Chain C, Nmr Structure Of The Second Phd Finger Of Aire
(aire-phd2)
Length = 66
Score = 36.6 bits (83), Expect = 0.020, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 23/55 (41%), Gaps = 3/55 (5%)
Query: 28 SRCEKCGSGDFPDELLLCDKCDKGFHLFCLRPILVSVPKGSWFCPSCSHHKRPKP 82
+RC CG G ++L C C FH C P S P C SCS P P
Sbjct: 13 ARCGVCGDGT---DVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDVTPAP 64
>pdb|1MVH|A Chain A, Structure Of The Set Domain Histone Lysine
Methyltransferase Clr4
pdb|1MVX|A Chain A, Structure Of The Set Domain Histone Lysine
Methyltransferase Clr4
Length = 299
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 62/147 (42%), Gaps = 14/147 (9%)
Query: 201 MMNRGEWPPLMVEYDPKEGFTVQADRFIKDLTIITEYVGDVDYLNNRE--------NDDG 252
++ RG PL + ++G+ V++ RF T IT Y+G+V + + E +DDG
Sbjct: 130 VVQRGRTLPLEIFKTKEKGWGVRSLRFAPAGTFITCYLGEV--ITSAEAAKRDKNYDDDG 187
Query: 253 DSTMTLLHASNPAQSLVVCPYKHGNIARFVNGINNHTADGKKKQNLKCVRYNVNGECRVL 312
+ + L + A V +G+++RF NH+ + +
Sbjct: 188 ITYLFDLDMFDDASEYTVDAQNYGDVSRFF----NHSCSPNIAIYSAVRNHGFRTIYDLA 243
Query: 313 LVANRDIAKGERLYYDYNGYEKEYPTE 339
A +DI E L +DY G + P +
Sbjct: 244 FFAIKDIQPLEELTFDYAGAKDFSPVQ 270
>pdb|1WEU|A Chain A, Solution Structure Of Phd Domain In Ing1-Like Protein
Bac25009
Length = 91
Score = 36.6 bits (83), Expect = 0.021, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 5/43 (11%)
Query: 41 ELLLCDKCD---KGFHLFCLRPILVSVPKGSWFCPSCSHHKRP 80
E++ CD D + FH C+ L + P+G WFCP CS P
Sbjct: 48 EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQESGP 88
>pdb|2BQZ|A Chain A, Crystal Structure Of A Ternary Complex Of The Human
Histone Methyltransferase Pr-Set7 (Also Known As Set8)
pdb|2BQZ|E Chain E, Crystal Structure Of A Ternary Complex Of The Human
Histone Methyltransferase Pr-Set7 (Also Known As Set8)
Length = 161
Score = 35.8 bits (81), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 28/135 (20%), Positives = 61/135 (45%), Gaps = 11/135 (8%)
Query: 201 MMNRGEWPPLMVEYDPKEGFTVQADRFIKDLTIITEYVGDVDYLNNRENDDGDSTMTLLH 260
++ G+ + ++ +G V A + + EY GD+ + + + + L+
Sbjct: 18 LIESGKEEGMKIDLIDGKGRGVIATKQFSRGDFVVEYHGDLIEITDAKKREA------LY 71
Query: 261 ASNPAQSLVVCPYKHGNIARFVNGINNHTADGKKKQNLKCVR-----YNVNGECRVLLVA 315
A +P+ + +++ + V+ G+ + KC ++++G ++L+A
Sbjct: 72 AQDPSTGCYMYYFQYLSKTYCVDATRETNRLGRLINHSKCGNCQTKLHDIDGVPHLILIA 131
Query: 316 NRDIAKGERLYYDYN 330
+RDIA GE L YDY
Sbjct: 132 SRDIAAGEELLYDYG 146
>pdb|2PNX|A Chain A, The Phd Finger Of Ing4 In Complex With An H3k4me3
Histone Peptide
pdb|2PNX|C Chain C, The Phd Finger Of Ing4 In Complex With An H3k4me3
Histone Peptide
Length = 55
Score = 35.8 bits (81), Expect = 0.035, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 5/41 (12%)
Query: 41 ELLLCDKCD---KGFHLFCLRPILVSVPKGSWFCPSCSHHK 78
E++ CD D + FH C+ L + P+G WFCP CS +
Sbjct: 17 EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQER 55
>pdb|1ZKK|A Chain A, Crystal Structure Of Hset8 In Ternary Complex With H4
Peptide (16-24) And Adohcy
pdb|1ZKK|B Chain B, Crystal Structure Of Hset8 In Ternary Complex With H4
Peptide (16-24) And Adohcy
pdb|1ZKK|C Chain C, Crystal Structure Of Hset8 In Ternary Complex With H4
Peptide (16-24) And Adohcy
pdb|1ZKK|D Chain D, Crystal Structure Of Hset8 In Ternary Complex With H4
Peptide (16-24) And Adohcy
Length = 167
Score = 35.8 bits (81), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 28/135 (20%), Positives = 61/135 (45%), Gaps = 11/135 (8%)
Query: 201 MMNRGEWPPLMVEYDPKEGFTVQADRFIKDLTIITEYVGDVDYLNNRENDDGDSTMTLLH 260
++ G+ + ++ +G V A + + EY GD+ + + + + L+
Sbjct: 24 LIESGKEEGMKIDLIDGKGRGVIATKQFSRGDFVVEYHGDLIEITDAKKREA------LY 77
Query: 261 ASNPAQSLVVCPYKHGNIARFVNGINNHTADGKKKQNLKCVR-----YNVNGECRVLLVA 315
A +P+ + +++ + V+ G+ + KC ++++G ++L+A
Sbjct: 78 AQDPSTGCYMYYFQYLSKTYCVDATRETNRLGRLINHSKCGNCQTKLHDIDGVPHLILIA 137
Query: 316 NRDIAKGERLYYDYN 330
+RDIA GE L YDY
Sbjct: 138 SRDIAAGEELLYDYG 152
>pdb|3K5K|A Chain A, Discovery Of A 2,4-Diamino-7-Aminoalkoxy-Quinazoline As A
Potent Inhibitor Of Histone Lysine Methyltransferase,
G9a
pdb|3K5K|B Chain B, Discovery Of A 2,4-Diamino-7-Aminoalkoxy-Quinazoline As A
Potent Inhibitor Of Histone Lysine Methyltransferase,
G9a
pdb|3RJW|A Chain A, Crystal Structure Of Histone Lysine Methyltransferase G9a
With An Inhibitor
pdb|3RJW|B Chain B, Crystal Structure Of Histone Lysine Methyltransferase G9a
With An Inhibitor
Length = 283
Score = 35.8 bits (81), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 63/130 (48%), Gaps = 15/130 (11%)
Query: 217 KEGFTVQADRFIKDLTIITEYVGDVDYLNNRENDDGDSTMTLLHASNP-AQSLVVCPYKH 275
K G+ V+A + I T I EYVG++ +++ E D + L N + + +
Sbjct: 137 KMGWGVRALQTIPQGTFICEYVGEL--ISDAEADVREDDSYLFDLDNKDGEVYCIDARYY 194
Query: 276 GNIARFVNGINNHTADGKKKQNLKCVR-YNVNGECR---VLLVANRDIAKGERLYYDYNG 331
GNI+RF+N H D N+ VR + ++ + R + ++RDI GE L +DY
Sbjct: 195 GNISRFIN----HLCD----PNIIPVRVFMLHQDLRFPRIAFFSSRDIRTGEELGFDYGD 246
Query: 332 YEKEYPTEHF 341
+ +++F
Sbjct: 247 RFWDIKSKYF 256
>pdb|2O8J|A Chain A, Human Euchromatic Histone Methyltransferase 2
pdb|2O8J|B Chain B, Human Euchromatic Histone Methyltransferase 2
pdb|2O8J|C Chain C, Human Euchromatic Histone Methyltransferase 2
pdb|2O8J|D Chain D, Human Euchromatic Histone Methyltransferase 2
Length = 281
Score = 35.8 bits (81), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 63/130 (48%), Gaps = 15/130 (11%)
Query: 217 KEGFTVQADRFIKDLTIITEYVGDVDYLNNRENDDGDSTMTLLHASNP-AQSLVVCPYKH 275
K G+ V+A + I T I EYVG++ +++ E D + L N + + +
Sbjct: 135 KMGWGVRALQTIPQGTFICEYVGEL--ISDAEADVREDDSYLFDLDNKDGEVYCIDARYY 192
Query: 276 GNIARFVNGINNHTADGKKKQNLKCVR-YNVNGECR---VLLVANRDIAKGERLYYDYNG 331
GNI+RF+N H D N+ VR + ++ + R + ++RDI GE L +DY
Sbjct: 193 GNISRFIN----HLCD----PNIIPVRVFMLHQDLRFPRIAFFSSRDIRTGEELGFDYGD 244
Query: 332 YEKEYPTEHF 341
+ +++F
Sbjct: 245 RFWDIKSKYF 254
>pdb|4IJ8|A Chain A, Crystal Structure Of The Complex Of Setd8 With Sam
pdb|4IJ8|B Chain B, Crystal Structure Of The Complex Of Setd8 With Sam
Length = 165
Score = 35.8 bits (81), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 4/44 (9%)
Query: 287 NHTADGKKKQNLKCVRYNVNGECRVLLVANRDIAKGERLYYDYN 330
NH+ G N + ++++G ++L+A+RDIA GE L YDY
Sbjct: 111 NHSKSG----NCQTKLHDIDGVPHLILIASRDIAAGEELLYDYG 150
>pdb|2KU3|A Chain A, Solution Structure Of Brd1 Phd1 Finger
Length = 71
Score = 35.4 bits (80), Expect = 0.047, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
Query: 25 DDDSRCEKCGSGDFPDE--LLLCDKCDKGFHLFCLRPILVSVPKGSWFCPSCSHHK-RP 80
D+D+ C C G+ + +L CD C+ H C + +P+G W C C + RP
Sbjct: 14 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYG--VPYIPEGQWLCRHCLQSRARP 70
>pdb|2L43|A Chain A, Structural Basis For Histone Code Recognition By
Brpf2-Phd1 Finger
Length = 88
Score = 34.7 bits (78), Expect = 0.079, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
Query: 25 DDDSRCEKCGSGDFPDE--LLLCDKCDKGFHLFCLRPILVSVPKGSWFCPSCSHHK-RP 80
D+D+ C C G+ + +L CD C+ H C + +P+G W C C + RP
Sbjct: 23 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYG--VPYIPEGQWLCRHCLQSRARP 79
>pdb|3F9Z|A Chain A, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y245f H4-Lys20
ADOHCY
pdb|3F9Z|B Chain B, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y245f H4-Lys20
ADOHCY
pdb|3F9Z|C Chain C, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y245f H4-Lys20
ADOHCY
pdb|3F9Z|D Chain D, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y245f H4-Lys20
ADOHCY
Length = 166
Score = 34.7 bits (78), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 29/145 (20%), Positives = 63/145 (43%), Gaps = 11/145 (7%)
Query: 201 MMNRGEWPPLMVEYDPKEGFTVQADRFIKDLTIITEYVGDVDYLNNRENDDGDSTMTLLH 260
++ G+ + ++ +G V A + + E+ GD+ + + + + L+
Sbjct: 23 LIESGKEEGMKIDLIDGKGRGVIATKQFSRGDFVVEFHGDLIEITDAKKREA------LY 76
Query: 261 ASNPAQSLVVCPYKHGNIARFVNGINNHTADGKKKQNLKCVR-----YNVNGECRVLLVA 315
A +P+ + +++ + V+ G+ + KC ++++G ++L+A
Sbjct: 77 AQDPSTGCYMYYFQYLSKTYCVDATRETNRLGRLINHSKCGNCQTKLHDIDGVPHLILIA 136
Query: 316 NRDIAKGERLYYDYNGYEKEYPTEH 340
+RDIA GE L YDY K H
Sbjct: 137 SRDIAAGEELLYDYGDRSKASIEAH 161
>pdb|3F9W|A Chain A, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20
ADOHCY
pdb|3F9W|B Chain B, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20
ADOHCY
pdb|3F9W|C Chain C, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20
ADOHCY
pdb|3F9W|D Chain D, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20
ADOHCY
pdb|3F9X|A Chain A, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20me2
Adohcy
pdb|3F9X|B Chain B, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20me2
Adohcy
pdb|3F9X|C Chain C, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20me2
Adohcy
pdb|3F9X|D Chain D, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20me2
Adohcy
pdb|3F9Y|A Chain A, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-y334f / H4-lys20me1
/ Adohcy
pdb|3F9Y|B Chain B, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-y334f / H4-lys20me1
/ Adohcy
Length = 166
Score = 34.7 bits (78), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 29/145 (20%), Positives = 63/145 (43%), Gaps = 11/145 (7%)
Query: 201 MMNRGEWPPLMVEYDPKEGFTVQADRFIKDLTIITEYVGDVDYLNNRENDDGDSTMTLLH 260
++ G+ + ++ +G V A + + EY GD+ + + + + L+
Sbjct: 23 LIESGKEEGMKIDLIDGKGRGVIATKQFSRGDFVVEYHGDLIEITDAKKREA------LY 76
Query: 261 ASNPAQSLVVCPYKHGNIARFVNGINNHTADGKKKQNLKCVR-----YNVNGECRVLLVA 315
A +P+ + +++ + V+ G+ + KC ++++G ++L+A
Sbjct: 77 AQDPSTGCYMYYFQYLSKTYCVDATRETNRLGRLINHSKCGNCQTKLHDIDGVPHLILIA 136
Query: 316 NRDIAKGERLYYDYNGYEKEYPTEH 340
+RDIA GE L +DY K H
Sbjct: 137 SRDIAAGEELLFDYGDRSKASIEAH 161
>pdb|1X4I|A Chain A, Solution Structure Of Phd Domain In Inhibitor Of Growth
Protein 3 (Ing3)
Length = 70
Score = 33.5 bits (75), Expect = 0.16, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 5/38 (13%)
Query: 41 ELLLCDKCD---KGFHLFCLRPILVSVPKGSWFCPSCS 75
E++ CD D + FH C+ L PKG W+CP C+
Sbjct: 18 EMVGCDNQDCPIEWFHYGCVG--LTEAPKGKWYCPQCT 53
>pdb|2K1J|A Chain A, Plan Homeodomain Finger Of Tumour Supressor Ing4
Length = 63
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 5/44 (11%)
Query: 41 ELLLCDKCD---KGFHLFCLRPILVSVPKGSWFCPSCSHHKRPK 81
E++ CD D + FH C+ L + P+G WFCP CS ++ K
Sbjct: 22 EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQERKKK 63
>pdb|2R3A|A Chain A, Methyltransferase Domain Of Human Suppressor Of
Variegation 3-9 Homolog 2
Length = 300
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 48/116 (41%), Gaps = 10/116 (8%)
Query: 219 GFTVQADRFIKDLTIITEYVGDVDYLNNREND----DGDSTMTLLHASNPAQSLVVCPYK 274
G+ V+ IK ++ + EYVG+V E D L + V +
Sbjct: 152 GWGVKTLVKIKRMSFVMEYVGEVITSEEAERRGQFYDNKGITYLFDLDYESDEFTVDAAR 211
Query: 275 HGNIARFVNGINNHTADGKKKQNLKCVRYNVNGEC-RVLLVANRDIAKGERLYYDY 329
+GN++ FVN H+ D Q N++ R+ L + R I GE L +DY
Sbjct: 212 YGNVSHFVN----HSCD-PNLQVFNVFIDNLDTRLPRIALFSTRTINAGEELTFDY 262
>pdb|4DY0|A Chain A, Crystal Structure Of Native Protease Nexin-1 With Heparin
pdb|4DY0|B Chain B, Crystal Structure Of Native Protease Nexin-1 With Heparin
pdb|4DY7|C Chain C, Crystal Structures Of Protease Nexin-1 In Complex With
S195a Thrombin
pdb|4DY7|F Chain F, Crystal Structures Of Protease Nexin-1 In Complex With
S195a Thrombin
Length = 379
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 46/98 (46%), Gaps = 13/98 (13%)
Query: 249 NDDGDSTMTLLHASNPAQSLVVCPYKHGNIARFVNGINNHTADGKKKQNLKCV-RYNVNG 307
++ G + S P ++V+ P HG IA V G+ ADG+ K+ L V RY VNG
Sbjct: 13 SNTGIQVFNQIVKSRPHDNIVISP--HG-IAS-VLGMLQLGADGRTKKQLAMVMRYGVNG 68
Query: 308 ECRVL------LVA--NRDIAKGERLYYDYNGYEKEYP 337
++L +V+ N+DI + N E E P
Sbjct: 69 VGKILKKINKAIVSKKNKDIVTVANAVFVKNASEIEVP 106
>pdb|2M1R|A Chain A, Phd Domain Of Ing4 N214d Mutant
Length = 63
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 5/44 (11%)
Query: 41 ELLLCDKCD---KGFHLFCLRPILVSVPKGSWFCPSCSHHKRPK 81
E++ CD D + FH C+ L + P+G WFCP CS ++ K
Sbjct: 22 EMIGCDDPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQERKKK 63
>pdb|2VNF|A Chain A, Molecular Basis Of Histone H3k4me3 Recognition By Ing4
pdb|2VNF|C Chain C, Molecular Basis Of Histone H3k4me3 Recognition By Ing4
Length = 60
Score = 32.0 bits (71), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 5/41 (12%)
Query: 41 ELLLCDKCD---KGFHLFCLRPILVSVPKGSWFCPSCSHHK 78
E++ CD D + FH C+ L + P+G WFCP CS +
Sbjct: 22 EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQER 60
>pdb|4FMU|A Chain A, Crystal Structure Of Methyltransferase Domain Of Human Set
Domain- Containing Protein 2 Compound: Pr-Snf
pdb|4H12|A Chain A, The Crystal Structure Of Methyltransferase Domain Of Human
Set Domain- Containing Protein 2 In Complex With
S-Adenosyl-L-Homocysteine
Length = 278
Score = 31.6 bits (70), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 25/116 (21%), Positives = 50/116 (43%), Gaps = 11/116 (9%)
Query: 217 KEGFTVQADRFIKDLTIITEYVGDV---DYLNNRENDDGDSTMTLLHASNPAQSLVVCPY 273
K+G+ ++A + + T + EY G+V R + + + ++
Sbjct: 126 KKGWGLRAAKDLPSNTFVLEYCGEVLDHKEFKARVKEYARNKNIHYYFMALKNDEIIDAT 185
Query: 274 KHGNIARFVNGINNHTADGKKKQNLKCVRYNVNGECRVLLVANRDIAKGERLYYDY 329
+ GN +RF+N H+ + N + ++ VNG+ RV + + G L +DY
Sbjct: 186 QKGNCSRFMN----HSCE----PNCETQKWTVNGQLRVGFFTTKLVPSGSELTFDY 233
>pdb|1WE9|A Chain A, Solution Structure Of Phd Domain In Nucleic Acid Binding
Protein-like Np_197993
Length = 64
Score = 31.2 bits (69), Expect = 0.77, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Query: 29 RCEKCGSGDFPDEL-LLCDKCDKGFHLFCLR--PILVSVPKGSWFCPSCSHHKRP 80
+C CG DE + CD C+ FH C++ P K + CPSCS+ P
Sbjct: 8 QCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIK-QYKCPSCSNKSGP 61
>pdb|3BO5|A Chain A, Crystal Structure Of Methyltransferase Domain Of Human
Histone-Lysine N-Methyltransferase Setmar
Length = 290
Score = 31.2 bits (69), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 54/125 (43%), Gaps = 18/125 (14%)
Query: 217 KEGFTVQADRFIKDLTIITEYVGDV-------DYLNNRENDDGDSTMTLLHASNPAQSL- 268
K+G+ ++ FI + EY G+V ++ + D + + + Q +
Sbjct: 135 KKGWGLRTLEFIPKGRFVCEYAGEVLGFSEVQRRIHLQTKSDSNYIIAIREHVYNGQVME 194
Query: 269 -VVCPYKHGNIARFVNGINNHTADGKKKQNLKCVRYNVNGEC-RVLLVANRDIAKGERLY 326
V P GNI RF+N H+ + NL + ++ ++ L A +DI E L
Sbjct: 195 TFVDPTYIGNIGRFLN----HSCE----PNLLMIPVRIDSMVPKLALFAAKDIVPEEELS 246
Query: 327 YDYNG 331
YDY+G
Sbjct: 247 YDYSG 251
>pdb|1WES|A Chain A, Solution Structure Of Phd Domain In Inhibitor Of Growth
Family, Member 1-Like
Length = 71
Score = 31.2 bits (69), Expect = 0.94, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
Query: 41 ELLLCD--KCD-KGFHLFCLRPILVSVPKGSWFCPSCSHHKRP 80
E++ CD +C + FH C+ L PKG W+CP C P
Sbjct: 28 EMIGCDNEQCPIEWFHFSCVS--LTYKPKGKWYCPKCRGDSGP 68
>pdb|3C6W|A Chain A, Crystal Structure Of The Ing5 Phd Finger In Complex With
H3k4me3 Peptide
pdb|3C6W|C Chain C, Crystal Structure Of The Ing5 Phd Finger In Complex With
H3k4me3 Peptide
Length = 59
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 5/41 (12%)
Query: 41 ELLLCDKCD---KGFHLFCLRPILVSVPKGSWFCPSCSHHK 78
E++ CD D + FH C+ L + PKG WFCP C K
Sbjct: 21 EMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQEK 59
>pdb|2G6Q|A Chain A, Crystal Structure Of Ing2 Phd Domain In Complex With
H3k4me3 Peptide
Length = 62
Score = 30.0 bits (66), Expect = 1.8, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 5/37 (13%)
Query: 41 ELLLCD--KCD-KGFHLFCLRPILVSVPKGSWFCPSC 74
E++ CD +C + FH C+ L PKG W+CP C
Sbjct: 23 EMIGCDNEQCPIEWFHFSCVS--LTYKPKGKWYCPKC 57
>pdb|2BYO|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Lipoprotein Lppx (Rv2945c)
Length = 207
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 137 DPERRLQQMASLATALRASGTEFTDEL--TYVTGMAPRSA 174
DP + Q+ S T L+A GTE D + T +TG P S+
Sbjct: 116 DPAAGVTQLLSGVTNLQAQGTEVIDGISTTKITGTIPASS 155
>pdb|2ECE|A Chain A, X-Ray Structure Of Hypothetical Selenium-Binding Protein
From Sulfolobus Tokodaii, St0059
Length = 462
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 110 NLRKRKRASGLVMSKKRRKLLPFNPTEDPERRLQQMASLATALR 153
+LRKRKR L + ++ R L P DP +L ++ +L+
Sbjct: 234 DLRKRKRIHSLTLGEENRMALELRPLHDPT-KLMGFINMVVSLK 276
>pdb|1V87|A Chain A, Solution Structure Of The Ring-H2 Finger Domain Of Mouse
Deltex Protein 2
Length = 114
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 47 KCDKGFHLFCLRPILVSVPK-GSWFCPSC 74
KC FHL CL + + K GS CPSC
Sbjct: 60 KCSHAFHLLCLLAMYCNGNKDGSLQCPSC 88
>pdb|3G2F|A Chain A, Crystal Structure Of The Kinase Domain Of Bone
Morphogenetic Protein Receptor Type Ii (Bmpr2) At 2.35 A
Resolution
pdb|3G2F|B Chain B, Crystal Structure Of The Kinase Domain Of Bone
Morphogenetic Protein Receptor Type Ii (Bmpr2) At 2.35 A
Resolution
Length = 336
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 274 KHGNIARFVNGINNHTADGKKKQNLKCVRYNVNG 307
+H NIARF+ G TADG + + L + Y NG
Sbjct: 65 EHDNIARFIVGDERVTADG-RMEYLLVMEYYPNG 97
>pdb|3PZP|A Chain A, Human Dna Polymerase Kappa Extending Opposite A Cis-Syn
Thymine Dimer
pdb|3PZP|B Chain B, Human Dna Polymerase Kappa Extending Opposite A Cis-Syn
Thymine Dimer
Length = 517
Score = 28.1 bits (61), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 23/43 (53%)
Query: 195 LNLCKHMMNRGEWPPLMVEYDPKEGFTVQADRFIKDLTIITEY 237
LN+ KH+ R WP Y K G +V+ D K++ ++E+
Sbjct: 191 LNITKHLEERQNWPEDKRRYFIKMGSSVENDNPGKEVNKLSEH 233
>pdb|2OH2|A Chain A, Ternary Complex Of Human Dna Polymerase
pdb|2OH2|B Chain B, Ternary Complex Of Human Dna Polymerase
pdb|2W7O|A Chain A, Structure And Activity Of Bypass Synthesis By Human Dna
Polymerase Kappa Opposite The 7,8-Dihydro-8-
Oxodeoxyguanosine Adduct
pdb|2W7O|B Chain B, Structure And Activity Of Bypass Synthesis By Human Dna
Polymerase Kappa Opposite The 7,8-Dihydro-8-
Oxodeoxyguanosine Adduct
pdb|2W7P|A Chain A, Structure And Activity Of Bypass Synthesis By Human Dna
Polymerase Kappa Opposite The 7,8-Dihydro-8-
Oxodeoxyguanosine Adduct
pdb|2W7P|B Chain B, Structure And Activity Of Bypass Synthesis By Human Dna
Polymerase Kappa Opposite The 7,8-Dihydro-8-
Oxodeoxyguanosine Adduct
pdb|3IN5|A Chain A, Structure Of Human Dna Polymerase Kappa Inserting Datp
Opposite An 8-Oxog Dna Lesion
pdb|3IN5|B Chain B, Structure Of Human Dna Polymerase Kappa Inserting Datp
Opposite An 8-Oxog Dna Lesion
Length = 508
Score = 27.7 bits (60), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 23/43 (53%)
Query: 195 LNLCKHMMNRGEWPPLMVEYDPKEGFTVQADRFIKDLTIITEY 237
LN+ KH+ R WP Y K G +V+ D K++ ++E+
Sbjct: 184 LNITKHLEERQNWPEDKRRYFIKMGSSVENDNPGKEVNKLSEH 226
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,043,081
Number of Sequences: 62578
Number of extensions: 455290
Number of successful extensions: 1013
Number of sequences better than 100.0: 68
Number of HSP's better than 100.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 953
Number of HSP's gapped (non-prelim): 73
length of query: 342
length of database: 14,973,337
effective HSP length: 100
effective length of query: 242
effective length of database: 8,715,537
effective search space: 2109159954
effective search space used: 2109159954
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)