Query 019353
Match_columns 342
No_of_seqs 274 out of 2342
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 08:46:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019353.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019353hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4442 Clathrin coat binding 100.0 5.8E-33 1.3E-37 271.7 10.5 164 152-333 65-240 (729)
2 KOG1083 Putative transcription 99.9 3.4E-28 7.4E-33 245.3 10.8 174 139-342 1127-1306(1306)
3 KOG1080 Histone H3 (Lys4) meth 99.9 1.1E-24 2.3E-29 226.4 12.9 114 207-333 865-986 (1005)
4 KOG1079 Transcriptional repres 99.9 4.8E-23 1E-27 201.2 8.1 126 197-332 582-711 (739)
5 KOG1082 Histone H3 (Lys9) meth 99.9 8.3E-23 1.8E-27 196.3 8.8 126 199-332 167-322 (364)
6 smart00317 SET SET (Su(var)3-9 99.9 3.6E-22 7.9E-27 160.1 10.2 110 210-329 2-116 (116)
7 KOG1085 Predicted methyltransf 99.8 6.4E-19 1.4E-23 157.0 10.8 127 197-333 245-380 (392)
8 KOG1141 Predicted histone meth 99.4 1.1E-13 2.4E-18 138.1 5.6 67 266-340 1177-1247(1262)
9 COG2940 Proteins containing SE 99.4 3.1E-14 6.7E-19 142.0 1.3 123 204-336 328-455 (480)
10 PF00856 SET: SET domain; Int 99.3 1.1E-12 2.4E-17 110.1 4.6 55 268-330 108-162 (162)
11 KOG1081 Transcription factor N 99.0 2.3E-10 5.1E-15 112.7 5.4 93 223-334 319-419 (463)
12 PF00628 PHD: PHD-finger; Int 99.0 1.7E-10 3.6E-15 79.1 0.9 48 29-76 1-50 (51)
13 KOG1244 Predicted transcriptio 98.9 3.5E-10 7.5E-15 100.6 1.4 59 18-76 272-330 (336)
14 KOG2461 Transcription factor B 98.7 1.5E-08 3.3E-13 97.7 6.6 118 206-334 26-147 (396)
15 smart00249 PHD PHD zinc finger 98.7 1.1E-08 2.3E-13 68.2 3.4 46 29-74 1-47 (47)
16 KOG1973 Chromatin remodeling p 98.5 7.1E-08 1.5E-12 89.3 3.0 52 23-78 215-269 (274)
17 KOG4299 PHD Zn-finger protein 98.4 8.6E-08 1.9E-12 94.9 2.1 52 27-78 253-306 (613)
18 KOG0825 PHD Zn-finger protein 98.4 1E-07 2.2E-12 95.7 1.7 51 26-76 214-265 (1134)
19 KOG2589 Histone tail methylase 98.4 3.3E-07 7.2E-12 85.2 4.3 102 216-335 135-242 (453)
20 KOG1512 PHD Zn-finger protein 98.3 2.4E-07 5.1E-12 83.3 1.6 59 18-78 305-364 (381)
21 KOG0383 Predicted helicase [Ge 98.0 3.6E-06 7.8E-11 86.0 2.9 54 22-78 42-95 (696)
22 COG5034 TNG2 Chromatin remodel 97.9 7.9E-06 1.7E-10 72.7 3.7 47 26-76 220-269 (271)
23 cd04718 BAH_plant_2 BAH, or Br 97.9 1E-05 2.2E-10 67.0 2.9 28 51-78 1-28 (148)
24 KOG4323 Polycomb-like PHD Zn-f 97.8 1.1E-05 2.3E-10 78.5 2.6 52 27-78 168-225 (464)
25 KOG0955 PHD finger protein BR1 97.7 2.1E-05 4.6E-10 83.6 3.0 55 22-78 214-270 (1051)
26 KOG0956 PHD finger protein AF1 97.6 2.1E-05 4.6E-10 78.6 1.3 50 28-79 6-59 (900)
27 KOG0954 PHD finger protein [Ge 97.6 2.6E-05 5.6E-10 78.6 1.2 51 25-77 269-321 (893)
28 PF13831 PHD_2: PHD-finger; PD 97.5 1.3E-05 2.7E-10 50.5 -0.9 34 40-75 2-36 (36)
29 COG5141 PHD zinc finger-contai 97.5 3.6E-05 7.8E-10 74.2 1.6 57 20-78 186-244 (669)
30 KOG0957 PHD finger protein [Ge 97.5 3.2E-05 6.8E-10 74.8 1.1 51 27-77 544-598 (707)
31 KOG1245 Chromatin remodeling c 97.3 4.3E-05 9.4E-10 84.2 -0.7 53 26-78 1107-1159(1404)
32 KOG4443 Putative transcription 97.2 0.00014 3.1E-09 72.7 2.1 54 23-76 64-117 (694)
33 KOG0957 PHD finger protein [Ge 96.8 0.00096 2.1E-08 64.8 3.6 61 17-77 109-179 (707)
34 KOG1141 Predicted histone meth 95.9 0.0041 8.8E-08 63.9 2.2 49 196-244 786-835 (1262)
35 KOG1844 PHD Zn-finger proteins 95.6 0.011 2.3E-07 59.8 3.8 51 27-78 85-136 (508)
36 KOG1473 Nucleosome remodeling 95.2 0.011 2.4E-07 62.7 2.3 49 27-78 344-392 (1414)
37 PF14446 Prok-RING_1: Prokaryo 94.2 0.026 5.6E-07 38.6 1.5 36 25-60 3-39 (54)
38 KOG1246 DNA-binding protein ju 94.2 0.062 1.3E-06 58.2 5.1 125 23-148 151-313 (904)
39 PF15446 zf-PHD-like: PHD/FYVE 90.3 0.14 3.1E-06 43.3 1.4 49 29-77 1-60 (175)
40 KOG4628 Predicted E3 ubiquitin 87.0 0.24 5.3E-06 47.1 0.7 47 28-77 230-276 (348)
41 PF13901 DUF4206: Domain of un 86.8 0.48 1E-05 41.9 2.4 42 27-77 152-198 (202)
42 KOG4299 PHD Zn-finger protein 84.8 0.64 1.4E-05 47.1 2.5 48 27-77 47-95 (613)
43 PF12861 zf-Apc11: Anaphase-pr 84.1 0.38 8.3E-06 36.2 0.4 46 30-77 35-80 (85)
44 PF13832 zf-HC5HC2H_2: PHD-zin 83.9 0.46 1E-05 37.5 0.9 31 26-58 54-86 (110)
45 KOG1512 PHD Zn-finger protein 81.4 0.56 1.2E-05 43.0 0.5 52 25-76 256-316 (381)
46 PF07227 DUF1423: Protein of u 80.1 1.1 2.4E-05 43.8 2.1 52 27-78 128-193 (446)
47 PF13639 zf-RING_2: Ring finge 78.4 0.15 3.2E-06 33.3 -3.2 42 29-75 2-44 (44)
48 KOG0383 Predicted helicase [Ge 76.0 2 4.3E-05 44.8 2.6 54 47-100 1-56 (696)
49 KOG4443 Putative transcription 72.6 1.2 2.5E-05 45.5 0.0 50 27-76 18-70 (694)
50 PF08666 SAF: SAF domain; Int 72.2 2.2 4.8E-05 29.6 1.4 15 312-326 3-17 (63)
51 KOG1632 Uncharacterized PHD Zn 72.1 2.1 4.6E-05 41.1 1.6 47 32-78 64-114 (345)
52 KOG1337 N-methyltransferase [G 71.3 2.9 6.4E-05 41.9 2.5 38 287-332 241-279 (472)
53 PF11793 FANCL_C: FANCL C-term 70.0 2.3 4.9E-05 30.8 1.0 50 28-77 3-64 (70)
54 PF07649 C1_3: C1-like domain; 67.5 1.9 4.1E-05 25.6 0.2 28 29-56 2-29 (30)
55 PF13771 zf-HC5HC2H: PHD-like 66.5 2.9 6.3E-05 31.5 1.0 30 28-59 37-68 (90)
56 PF12678 zf-rbx1: RING-H2 zinc 62.0 2.4 5.2E-05 30.9 -0.2 43 29-75 21-73 (73)
57 KOG1734 Predicted RING-contain 60.8 3 6.5E-05 38.1 0.2 53 23-77 220-279 (328)
58 KOG1829 Uncharacterized conser 58.3 2.8 6.2E-05 42.7 -0.4 45 27-78 511-560 (580)
59 PF07496 zf-CW: CW-type Zinc F 57.2 5.7 0.00012 26.7 1.1 33 41-74 2-35 (50)
60 PF10497 zf-4CXXC_R1: Zinc-fin 54.9 5.5 0.00012 31.4 0.8 53 23-76 3-69 (105)
61 KOG1473 Nucleosome remodeling 52.5 2.2 4.8E-05 46.2 -2.3 48 28-78 429-480 (1414)
62 KOG1632 Uncharacterized PHD Zn 51.2 2.6 5.7E-05 40.5 -1.9 56 22-77 234-295 (345)
63 PF13922 PHD_3: PHD domain of 50.3 3.3 7.2E-05 29.4 -1.0 32 32-75 37-68 (69)
64 KOG2084 Predicted histone tail 48.5 27 0.00059 34.3 4.8 40 281-332 208-248 (482)
65 PF14445 Prok-RING_2: Prokaryo 47.2 1.6 3.4E-05 29.3 -2.8 43 26-75 6-48 (57)
66 smart00858 SAF This domain fam 46.5 13 0.00029 25.5 1.6 15 312-326 3-17 (64)
67 KOG1244 Predicted transcriptio 45.2 4.1 8.9E-05 37.3 -1.5 49 28-76 225-283 (336)
68 PF03107 C1_2: C1 domain; Int 45.1 21 0.00045 21.1 2.1 28 29-57 2-30 (30)
69 PRK14559 putative protein seri 44.2 20 0.00044 37.4 3.1 48 28-77 2-50 (645)
70 KOG2752 Uncharacterized conser 43.8 12 0.00026 35.1 1.2 31 27-58 128-165 (345)
71 PF00301 Rubredoxin: Rubredoxi 43.1 17 0.00036 24.2 1.5 15 63-78 30-44 (47)
72 KOG2155 Tubulin-tyrosine ligas 42.9 15 0.00032 36.2 1.7 45 279-331 205-251 (631)
73 COG1773 Rubredoxin [Energy pro 41.8 22 0.00047 24.5 2.0 22 56-78 25-46 (55)
74 KOG3799 Rab3 effector RIM1 and 41.5 9.3 0.0002 31.2 0.2 52 26-77 64-116 (169)
75 PF00130 C1_1: Phorbol esters/ 40.9 23 0.00049 23.6 2.0 33 26-58 10-44 (53)
76 KOG0956 PHD finger protein AF1 40.6 15 0.00032 38.1 1.4 53 25-77 115-180 (900)
77 PHA02929 N1R/p28-like protein; 39.3 13 0.00028 33.8 0.7 49 25-77 172-225 (238)
78 PF10367 Vps39_2: Vacuolar sor 38.0 22 0.00048 27.3 1.8 32 26-58 77-108 (109)
79 cd00162 RING RING-finger (Real 37.2 8 0.00017 24.0 -0.7 42 30-76 2-43 (45)
80 cd00350 rubredoxin_like Rubred 36.4 23 0.0005 21.4 1.3 11 67-77 16-26 (33)
81 KOG4718 Non-SMC (structural ma 35.8 7.5 0.00016 34.3 -1.3 50 25-77 179-228 (235)
82 PF09416 UPF1_Zn_bind: RNA hel 33.5 23 0.0005 29.7 1.3 24 29-53 2-25 (152)
83 PF05715 zf-piccolo: Piccolo Z 30.8 27 0.00058 24.4 1.0 12 66-77 47-58 (61)
84 smart00317 SET SET (Su(var)3-9 30.5 64 0.0014 24.4 3.4 34 202-235 77-113 (116)
85 PHA02862 5L protein; Provision 30.3 15 0.00032 30.5 -0.3 48 28-77 3-51 (156)
86 PF15446 zf-PHD-like: PHD/FYVE 29.0 46 0.00099 28.5 2.3 23 39-61 121-143 (175)
87 KOG0827 Predicted E3 ubiquitin 28.7 12 0.00027 36.0 -1.2 49 27-76 4-53 (465)
88 KOG1493 Anaphase-promoting com 28.4 7.2 0.00016 28.7 -2.2 46 30-77 34-79 (84)
89 PF09297 zf-NADH-PPase: NADH p 27.9 44 0.00095 19.9 1.5 24 27-50 3-29 (32)
90 KOG3612 PHD Zn-finger protein 27.9 91 0.002 31.6 4.5 48 27-77 60-108 (588)
91 PF02318 FYVE_2: FYVE-type zin 27.6 33 0.00073 27.3 1.3 51 24-77 51-103 (118)
92 PF06937 EURL: EURL protein; 27.5 31 0.00067 31.7 1.1 27 23-49 11-37 (285)
93 KOG1338 Uncharacterized conser 26.9 41 0.0009 32.7 1.9 24 307-330 236-259 (466)
94 cd00730 rubredoxin Rubredoxin; 26.5 52 0.0011 22.1 1.8 15 63-78 30-44 (50)
95 PRK11827 hypothetical protein; 26.1 50 0.0011 23.2 1.8 25 28-52 9-36 (60)
96 PF12773 DZR: Double zinc ribb 26.1 68 0.0015 21.0 2.4 9 68-76 29-37 (50)
97 smart00570 AWS associated with 25.1 24 0.00053 23.9 0.1 31 169-205 18-49 (51)
98 smart00109 C1 Protein kinase C 24.7 31 0.00068 22.0 0.5 32 27-58 11-43 (49)
99 KOG3053 Uncharacterized conser 24.4 18 0.00039 32.9 -0.9 53 25-77 18-80 (293)
100 smart00184 RING Ring finger. E 24.1 14 0.0003 21.9 -1.3 28 30-60 1-28 (39)
101 COG1188 Ribosome-associated he 23.7 72 0.0016 24.9 2.4 34 298-334 31-64 (100)
102 smart00744 RINGv The RING-vari 23.6 18 0.0004 24.1 -0.8 44 29-74 1-48 (49)
103 KOG2879 Predicted E3 ubiquitin 23.2 56 0.0012 30.2 2.0 58 16-78 228-286 (298)
104 KOG1952 Transcription factor N 23.0 15 0.00033 38.9 -1.9 50 28-77 192-245 (950)
105 COG3831 Uncharacterized conser 22.4 79 0.0017 23.8 2.3 30 308-341 14-45 (85)
106 COG5540 RING-finger-containing 22.0 22 0.00048 33.2 -0.8 60 15-77 311-370 (374)
107 TIGR03569 NeuB_NnaB N-acetylne 21.8 50 0.0011 31.6 1.4 19 310-328 277-295 (329)
108 KOG4323 Polycomb-like PHD Zn-f 21.8 75 0.0016 31.7 2.7 52 24-77 80-133 (464)
109 PHA02825 LAP/PHD finger-like p 21.6 36 0.00078 28.8 0.4 50 26-77 7-57 (162)
110 PF05191 ADK_lid: Adenylate ki 21.5 75 0.0016 19.7 1.8 27 44-76 3-29 (36)
111 KOG2041 WD40 repeat protein [G 21.4 91 0.002 32.9 3.2 64 28-100 1118-1183(1189)
112 PF10080 DUF2318: Predicted me 21.3 43 0.00094 26.2 0.8 32 27-58 35-68 (102)
113 PLN02638 cellulose synthase A 21.2 76 0.0016 35.1 2.8 52 23-77 13-68 (1079)
114 PLN03208 E3 ubiquitin-protein 21.2 30 0.00066 30.3 -0.1 52 23-77 14-77 (193)
115 COG5141 PHD zinc finger-contai 20.8 38 0.00083 33.8 0.4 31 27-59 303-335 (669)
116 PLN02400 cellulose synthase 20.6 93 0.002 34.4 3.3 52 23-77 32-87 (1085)
117 cd00029 C1 Protein kinase C co 20.3 53 0.0012 21.1 1.0 32 27-58 11-44 (50)
No 1
>KOG4442 consensus Clathrin coat binding protein/Huntingtin interacting protein HIP1, involved in regulation of endocytosis [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=5.8e-33 Score=271.73 Aligned_cols=164 Identities=22% Similarity=0.273 Sum_probs=134.2
Q ss_pred hhcCCCc--cCCCccccCCCCcccccchhhccCCceecC-hHHHHHHHHhhHH-hhcCCCCccEEeecCCCceeEEEccC
Q 019353 152 LRASGTE--FTDELTYVTGMAPRSANSAVLEKGGMQVLS-KEDIETLNLCKHM-MNRGEWPPLMVEYDPKEGFTVQADRF 227 (342)
Q Consensus 152 l~~~~~~--~s~~~~~~~~~~~~~~n~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~G~Gv~a~~~ 227 (342)
...|.|. +.+...-..+.++.|+|++...+|+...|+ .. ..|+|+ +|+..+.+++||.+..+||||+|..+
T Consensus 65 ~m~Cdc~~~~~d~~n~~~~cg~~CiNr~t~iECs~~~C~~cg-----~~C~NQRFQkkqyA~vevF~Te~KG~GLRA~~d 139 (729)
T KOG4442|consen 65 EMICDCKPKTGDGANGACACGEDCINRMTSIECSDRECPRCG-----VYCKNQRFQKKQYAKVEVFLTEKKGCGLRAEED 139 (729)
T ss_pred ceeeecccccccccccccccCccccchhhhcccCCccCCCcc-----ccccchhhhhhccCceeEEEecCcccceeeccc
Confidence 3444443 455433334677899999999999887887 44 678876 99999999999999999999999999
Q ss_pred CCCCCeEEEccceeecccc-------cccCC-CCceeeeecccCCCCcEEEeCCCCCCeeeeccCCCCCCCCCCCCCCcE
Q 019353 228 IKDLTIITEYVGDVDYLNN-------RENDD-GDSTMTLLHASNPAQSLVVCPYKHGNIARFVNGINNHTADGKKKQNLK 299 (342)
Q Consensus 228 i~~g~~I~ey~Gev~~~~~-------~~~~~-~~~~~~~~~~~~~~~~~~iDa~~~GN~aRfin~~~~hSC~~~~~pN~~ 299 (342)
|++|+||+||+|||+.... +..+. .++|++-+ . ...+|||+.+||+||||| |||+ |||+
T Consensus 140 I~~g~FI~EY~GEVI~~~Ef~kR~~~Y~~d~~kh~Yfm~L---~--~~e~IDAT~KGnlaRFiN----HSC~----PNa~ 206 (729)
T KOG4442|consen 140 IPKGQFILEYIGEVIEEKEFEKRVKRYAKDGIKHYYFMAL---Q--GGEYIDATKKGNLARFIN----HSCD----PNAE 206 (729)
T ss_pred cCCCcEEeeeccccccHHHHHHHHHHHHhcCCceEEEEEe---c--CCceecccccCcHHHhhc----CCCC----CCce
Confidence 9999999999999986421 11222 22332222 2 578999999999999999 9999 9999
Q ss_pred EEEEEECCeEEEEEEEcCCCCCCCeEEEecCCCC
Q 019353 300 CVRYNVNGECRVLLVANRDIAKGERLYYDYNGYE 333 (342)
Q Consensus 300 ~~~~~~~~~~~i~l~A~rdI~~GEELt~dY~~~~ 333 (342)
++.|.|+|..||+|||.|.|.+||||||||+++.
T Consensus 207 ~~KWtV~~~lRvGiFakk~I~~GEEITFDYqf~r 240 (729)
T KOG4442|consen 207 VQKWTVPDELRVGIFAKKVIKPGEEITFDYQFDR 240 (729)
T ss_pred eeeeeeCCeeEEEEeEecccCCCceeeEeccccc
Confidence 9999999999999999999999999999999754
No 2
>KOG1083 consensus Putative transcription factor ASH1/LIN-59 [Transcription]
Probab=99.95 E-value=3.4e-28 Score=245.35 Aligned_cols=174 Identities=34% Similarity=0.430 Sum_probs=141.3
Q ss_pred HHHhhhhhhhhhhhhcCCCccCCCccccCCCCcccccchhhccCCceecChHHHHHHHHhhHHhhcCCCCccEEeecCCC
Q 019353 139 ERRLQQMASLATALRASGTEFTDELTYVTGMAPRSANSAVLEKGGMQVLSKEDIETLNLCKHMMNRGEWPPLMVEYDPKE 218 (342)
Q Consensus 139 ~~r~k~~~s~~sal~~~~~~~s~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 218 (342)
..+++++..+..+..+-+..++....+..+.... .+ .+. ..|+++...+.-++|.|++.+.+
T Consensus 1127 k~R~~~~~dL~~~~~A~n~~~~c~kg~~~g~~~c-ld--------------~d~---c~nqrm~r~e~cp~L~v~~gp~~ 1188 (1306)
T KOG1083|consen 1127 KIRINVYKDLQRLSKAGNNTCKCRKGRPRKQKTC-LD--------------PDS---CSNQRMQRHEECPPLEVFRGPKK 1188 (1306)
T ss_pred HHHHHHHHhhhhhhhccCccccccCCCCCCCccc-cC--------------chh---hhhHHhhhhccCCCcceeccCCC
Confidence 5777888888888777777777766664443111 11 111 56677888889999999999999
Q ss_pred ceeEEEccCCCCCCeEEEccceeecccccccCCCCceeeeecccCC------CCcEEEeCCCCCCeeeeccCCCCCCCCC
Q 019353 219 GFTVQADRFIKDLTIITEYVGDVDYLNNRENDDGDSTMTLLHASNP------AQSLVVCPYKHGNIARFVNGINNHTADG 292 (342)
Q Consensus 219 G~Gv~a~~~i~~g~~I~ey~Gev~~~~~~~~~~~~~~~~~~~~~~~------~~~~~iDa~~~GN~aRfin~~~~hSC~~ 292 (342)
||||.|.++|++|+||+||+|||++..+++.+ +|.++...++ ..+++||+.++||.+||+| |||.
T Consensus 1189 G~~v~tk~PikagtfI~EYvGeVit~ke~e~~----mmtl~~~d~~~~cL~I~p~l~id~~R~~n~~Rfin----hscK- 1259 (1306)
T KOG1083|consen 1189 GWGVRTKEPIKAGTFIMEYVGEVITEKEFEPR----MMTLYHNDDDHYCLVIDPGLFIDIPRMGNGARFIN----HSCK- 1259 (1306)
T ss_pred CccccccccccccchHHHHHHHHHHHHhhccc----ccccCCCCCcccccccCccccCChhhccccccccc----cccC-
Confidence 99999999999999999999999998777644 3333332222 2466777788888888888 9999
Q ss_pred CCCCCcEEEEEEECCeEEEEEEEcCCCCCCCeEEEecCCCCCCCCCCCCC
Q 019353 293 KKKQNLKCVRYNVNGECRVLLVANRDIAKGERLYYDYNGYEKEYPTEHFV 342 (342)
Q Consensus 293 ~~~pN~~~~~~~~~~~~~i~l~A~rdI~~GEELt~dY~~~~~~~~~~~~~ 342 (342)
|||++++|.|+|..|++|||+|||.+||||||||++..++||+++|+
T Consensus 1260 ---PNc~~qkwSVNG~~Rv~L~A~rDi~kGEELtYDYN~ks~~~pte~~c 1306 (1306)
T KOG1083|consen 1260 ---PNCEMQKWSVNGEYRVGLFALRDLPKGEELTYDYNFKSFNYPTEQLC 1306 (1306)
T ss_pred ---CCCccccccccceeeeeeeecCCCCCCceEEEeccccccCCccccCC
Confidence 99999999999999999999999999999999999999999999985
No 3
>KOG1080 consensus Histone H3 (Lys4) methyltransferase complex, subunit SET1 and related methyltransferases [Chromatin structure and dynamics; Transcription]
Probab=99.92 E-value=1.1e-24 Score=226.43 Aligned_cols=114 Identities=32% Similarity=0.426 Sum_probs=98.4
Q ss_pred CCccEEeecCCCceeEEEccCCCCCCeEEEccceeecc---cccc----c-CCCCceeeeecccCCCCcEEEeCCCCCCe
Q 019353 207 WPPLMVEYDPKEGFTVQADRFIKDLTIITEYVGDVDYL---NNRE----N-DDGDSTMTLLHASNPAQSLVVCPYKHGNI 278 (342)
Q Consensus 207 ~~~~~v~~~~~~G~Gv~a~~~i~~g~~I~ey~Gev~~~---~~~~----~-~~~~~~~~~~~~~~~~~~~~iDa~~~GN~ 278 (342)
...|....+.++||||||+++|.+|++|+||+||++.. +.|+ . ..++.|++-. | ...||||++.||+
T Consensus 865 kk~~~F~~s~iH~wglfa~~~i~~~dmViEY~Ge~vR~~iad~RE~~Y~~~gi~~sYlfri---d--~~~ViDAtk~gni 939 (1005)
T KOG1080|consen 865 KKYVKFGRSGIHGWGLFAMENIAAGDMVIEYRGELVRSSIADLREARYERMGIGDSYLFRI---D--DEVVVDATKKGNI 939 (1005)
T ss_pred hhhhccccccccccceeeccCccccceEEEeeceehhhhHHHHHHHHHhccCcccceeeec---c--cceEEeccccCch
Confidence 34588889999999999999999999999999999742 2222 2 2356665543 3 6899999999999
Q ss_pred eeeccCCCCCCCCCCCCCCcEEEEEEECCeEEEEEEEcCCCCCCCeEEEecCCCC
Q 019353 279 ARFVNGINNHTADGKKKQNLKCVRYNVNGECRVLLVANRDIAKGERLYYDYNGYE 333 (342)
Q Consensus 279 aRfin~~~~hSC~~~~~pN~~~~~~~~~~~~~i~l~A~rdI~~GEELt~dY~~~~ 333 (342)
||||| |||. |||+...+.|+|+.+|+|||.|+|.+||||||||.|.-
T Consensus 940 Ar~In----HsC~----PNCyakvi~V~g~~~IvIyakr~I~~~EElTYDYkF~~ 986 (1005)
T KOG1080|consen 940 ARFIN----HSCN----PNCYAKVITVEGDKRIVIYSKRDIAAGEELTYDYKFPT 986 (1005)
T ss_pred hheee----cccC----CCceeeEEEecCeeEEEEEEecccccCceeeeeccccc
Confidence 99999 9999 99999999999999999999999999999999999743
No 4
>KOG1079 consensus Transcriptional repressor EZH1 [Transcription]
Probab=99.88 E-value=4.8e-23 Score=201.19 Aligned_cols=126 Identities=25% Similarity=0.406 Sum_probs=109.1
Q ss_pred HhhHH-hhcCCCCccEEeecCCCceeEEEccCCCCCCeEEEccceeeccccccc---CCCCceeeeecccCCCCcEEEeC
Q 019353 197 LCKHM-MNRGEWPPLMVEYDPKEGFTVQADRFIKDLTIITEYVGDVDYLNNREN---DDGDSTMTLLHASNPAQSLVVCP 272 (342)
Q Consensus 197 ~~~~~-~~~~~~~~~~v~~~~~~G~Gv~a~~~i~~g~~I~ey~Gev~~~~~~~~---~~~~~~~~~~~~~~~~~~~~iDa 272 (342)
.|++. ++++.+.++.+..+.+.|||||+++.+.+++||.||+||+|+..+-+. -=..+...++|..+ .+++|||
T Consensus 582 ~C~N~~l~~~~qkr~llapSdVaGwGlFlKe~v~KnefisEY~GE~IS~dEADrRGkiYDr~~cSflFnln--~dyviDs 659 (739)
T KOG1079|consen 582 SCKNTNLQRGEQKRVLLAPSDVAGWGLFLKESVSKNEFISEYTGEIISHDEADRRGKIYDRYMCSFLFNLN--NDYVIDS 659 (739)
T ss_pred ccccchhhhhhhcceeechhhccccceeeccccCCCceeeeecceeccchhhhhcccccccccceeeeecc--ccceEee
Confidence 56666 888999999999999999999999999999999999999998643332 12233455555555 5699999
Q ss_pred CCCCCeeeeccCCCCCCCCCCCCCCcEEEEEEECCeEEEEEEEcCCCCCCCeEEEecCCC
Q 019353 273 YKHGNIARFVNGINNHTADGKKKQNLKCVRYNVNGECRVLLVANRDIAKGERLYYDYNGY 332 (342)
Q Consensus 273 ~~~GN~aRfin~~~~hSC~~~~~pN~~~~~~~~~~~~~i~l~A~rdI~~GEELt~dY~~~ 332 (342)
++.||.+||+| ||-. |||...++.|+|..||+|||.|+|++||||||||.+.
T Consensus 660 ~rkGnk~rFAN----HS~n----PNCYAkvm~V~GdhRIGifAkRaIeagEELffDYrYs 711 (739)
T KOG1079|consen 660 TRKGNKIRFAN----HSFN----PNCYAKVMMVAGDHRIGIFAKRAIEAGEELFFDYRYS 711 (739)
T ss_pred eeecchhhhcc----CCCC----CCcEEEEEEecCCcceeeeehhhcccCceeeeeeccC
Confidence 99999999999 9999 9999999999999999999999999999999999864
No 5
>KOG1082 consensus Histone H3 (Lys9) methyltransferase SUV39H1/Clr4, required for transcriptional silencing [Chromatin structure and dynamics; Transcription]
Probab=99.88 E-value=8.3e-23 Score=196.28 Aligned_cols=126 Identities=29% Similarity=0.390 Sum_probs=101.2
Q ss_pred hHHhhcCCCCccEEeecCCCceeEEEccCCCCCCeEEEccceeecccccc-------c--CCCC-ceee-eec-------
Q 019353 199 KHMMNRGEWPPLMVEYDPKEGFTVQADRFIKDLTIITEYVGDVDYLNNRE-------N--DDGD-STMT-LLH------- 260 (342)
Q Consensus 199 ~~~~~~~~~~~~~v~~~~~~G~Gv~a~~~i~~g~~I~ey~Gev~~~~~~~-------~--~~~~-~~~~-~~~------- 260 (342)
++++|.+...+|+|+++..+||||++.+.|++|+||+||.||++....-+ + +..+ +... +.+
T Consensus 167 nRv~q~g~~~~leIfrt~~kGwgvRs~~~I~~G~fvcEyaGe~~t~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (364)
T KOG1082|consen 167 NRVVQKGLQFHLEVFRTPEKGWGVRTLDPIPAGEFVCEYAGEVLTSEEAQRRTHLREYLDDDCDAYSIADREWVDESPVG 246 (364)
T ss_pred chhhccccccceEEEecCCceeeecccccccCCCeeEEEeeEecChHHhhhccccccccccccccchhhhcccccccccc
Confidence 45699999999999999999999999999999999999999997532111 1 1111 1111 111
Q ss_pred --------ccCCCCcEEEeCCCCCCeeeeccCCCCCCCCCCCCCCcEEEEEEECCe----EEEEEEEcCCCCCCCeEEEe
Q 019353 261 --------ASNPAQSLVVCPYKHGNIARFVNGINNHTADGKKKQNLKCVRYNVNGE----CRVLLVANRDIAKGERLYYD 328 (342)
Q Consensus 261 --------~~~~~~~~~iDa~~~GN~aRfin~~~~hSC~~~~~pN~~~~~~~~~~~----~~i~l~A~rdI~~GEELt~d 328 (342)
.......+.|||..+||+||||| |||. ||+.++.+..+.. +|++|||+++|.+|||||||
T Consensus 247 ~~~~~~~~~~~~~~~~~ida~~~GNv~Rfin----HSC~----PN~~~~~v~~~~~~~~~~~i~ffa~~~I~p~~ELT~d 318 (364)
T KOG1082|consen 247 NTFVAPSLPGGPGRELLIDAKPHGNVARFIN----HSCS----PNLLYQAVFQDEFVLLYLRIGFFALRDISPGEELTLD 318 (364)
T ss_pred ccccccccccCCCcceEEchhhccccccccc----CCCC----ccceeeeeeecCCccchheeeeeeccccCCCcccchh
Confidence 11234799999999999999999 9999 9999999988743 79999999999999999999
Q ss_pred cCCC
Q 019353 329 YNGY 332 (342)
Q Consensus 329 Y~~~ 332 (342)
|+..
T Consensus 319 Yg~~ 322 (364)
T KOG1082|consen 319 YGKA 322 (364)
T ss_pred hccc
Confidence 9954
No 6
>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain. Putative methyl transferase, based on outlier plant homologues
Probab=99.87 E-value=3.6e-22 Score=160.11 Aligned_cols=110 Identities=34% Similarity=0.503 Sum_probs=88.7
Q ss_pred cEEeecCCCceeEEEccCCCCCCeEEEccceeecccccccC-----CCCceeeeecccCCCCcEEEeCCCCCCeeeeccC
Q 019353 210 LMVEYDPKEGFTVQADRFIKDLTIITEYVGDVDYLNNREND-----DGDSTMTLLHASNPAQSLVVCPYKHGNIARFVNG 284 (342)
Q Consensus 210 ~~v~~~~~~G~Gv~a~~~i~~g~~I~ey~Gev~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~iDa~~~GN~aRfin~ 284 (342)
++++.++.+|+||+|+++|++|++|++|.|.+......... .......+++.. ...++||++..||++||+|
T Consensus 2 ~~~~~~~~~G~gl~a~~~i~~g~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~id~~~~~~~~~~iN- 78 (116)
T smart00317 2 LEVFKSPGKGWGVRATEDIPKGEFIGEYVGEIITSEEAEERSKAYDTDGADSFYLFEI--DSDLCIDARRKGNIARFIN- 78 (116)
T ss_pred cEEEecCCCcEEEEECCccCCCCEEEEEEeEEECHHHHHHHHHHHHhcCCCCEEEEEC--CCCEEEeCCccCcHHHeeC-
Confidence 56777889999999999999999999999999753222111 011001222222 2478999999999999999
Q ss_pred CCCCCCCCCCCCCcEEEEEEECCeEEEEEEEcCCCCCCCeEEEec
Q 019353 285 INNHTADGKKKQNLKCVRYNVNGECRVLLVANRDIAKGERLYYDY 329 (342)
Q Consensus 285 ~~~hSC~~~~~pN~~~~~~~~~~~~~i~l~A~rdI~~GEELt~dY 329 (342)
|||. |||.+..+..++..++.++|+|||++|||||+||
T Consensus 79 ---Hsc~----pN~~~~~~~~~~~~~~~~~a~r~I~~GeEi~i~Y 116 (116)
T smart00317 79 ---HSCE----PNCELLFVEVNGDSRIVIFALRDIKPGEELTIDY 116 (116)
T ss_pred ---CCCC----CCEEEEEEEECCCcEEEEEECCCcCCCCEEeecC
Confidence 9999 9999999998888899999999999999999998
No 7
>KOG1085 consensus Predicted methyltransferase (contains a SET domain) [General function prediction only]
Probab=99.79 E-value=6.4e-19 Score=156.97 Aligned_cols=127 Identities=27% Similarity=0.409 Sum_probs=104.6
Q ss_pred HhhHHhhcCCCCccEEeecCCCceeEEEccCCCCCCeEEEccceeecc-------cccccC-CCCceeeeecccCCCCcE
Q 019353 197 LCKHMMNRGEWPPLMVEYDPKEGFTVQADRFIKDLTIITEYVGDVDYL-------NNREND-DGDSTMTLLHASNPAQSL 268 (342)
Q Consensus 197 ~~~~~~~~~~~~~~~v~~~~~~G~Gv~a~~~i~~g~~I~ey~Gev~~~-------~~~~~~-~~~~~~~~~~~~~~~~~~ 268 (342)
...+.+..+....+.+..-.++|.||+|+..+.+|+||.||.|.++.. ..+..+ ....||.|+... ...+
T Consensus 245 ~l~~~vl~g~~egl~~~~~dgKGRGv~a~~~F~rgdFVVEY~Gdliei~eAk~rE~~Ya~De~~GcYMYyF~h~--sk~y 322 (392)
T KOG1085|consen 245 ALRDTVLKGTNEGLLEVYKDGKGRGVRAKVNFERGDFVVEYRGDLIEISEAKVREEQYANDEEIGCYMYYFEHN--SKKY 322 (392)
T ss_pred HHHHHHHhccccceeEEeeccccceeEeecccccCceEEEEecceeeechHHHHHHHhccCcccceEEEeeecc--Ceee
Confidence 445557777777888877777999999999999999999999999753 222223 345666665433 3799
Q ss_pred EEeCCCCCC-eeeeccCCCCCCCCCCCCCCcEEEEEEECCeEEEEEEEcCCCCCCCeEEEecCCCC
Q 019353 269 VVCPYKHGN-IARFVNGINNHTADGKKKQNLKCVRYNVNGECRVLLVANRDIAKGERLYYDYNGYE 333 (342)
Q Consensus 269 ~iDa~~~GN-~aRfin~~~~hSC~~~~~pN~~~~~~~~~~~~~i~l~A~rdI~~GEELt~dY~~~~ 333 (342)
||||+...| ++|.|| ||-. +||....+.|+|.+|++|+|.|||.+||||+|||+...
T Consensus 323 CiDAT~et~~lGRLIN----HS~~----gNl~TKvv~Idg~pHLiLvA~rdIa~GEELlYDYGDRS 380 (392)
T KOG1085|consen 323 CIDATKETPWLGRLIN----HSVR----GNLKTKVVEIDGSPHLILVARRDIAQGEELLYDYGDRS 380 (392)
T ss_pred eeecccccccchhhhc----cccc----CcceeeEEEecCCceEEEEeccccccchhhhhhccccc
Confidence 999998655 699999 9999 99999999999999999999999999999999999744
No 8
>KOG1141 consensus Predicted histone methyl transferase [Chromatin structure and dynamics]
Probab=99.43 E-value=1.1e-13 Score=138.08 Aligned_cols=67 Identities=25% Similarity=0.401 Sum_probs=61.0
Q ss_pred CcEEEeCCCCCCeeeeccCCCCCCCCCCCCCCcEEEEEEECCe----EEEEEEEcCCCCCCCeEEEecCCCCCCCCCCC
Q 019353 266 QSLVVCPYKHGNIARFVNGINNHTADGKKKQNLKCVRYNVNGE----CRVLLVANRDIAKGERLYYDYNGYEKEYPTEH 340 (342)
Q Consensus 266 ~~~~iDa~~~GN~aRfin~~~~hSC~~~~~pN~~~~~~~~~~~----~~i~l~A~rdI~~GEELt~dY~~~~~~~~~~~ 340 (342)
.-++|||...||++||+| |||. ||+.++.++++.. +.++|||.|-|++|+||||||++.-...+++.
T Consensus 1177 ~~yvIDAk~eGNlGRfLN----HSC~----PNl~VQnVfvdTHdlrfPwVAFFt~kyVkAgtELTWDY~Ye~g~v~~ke 1247 (1262)
T KOG1141|consen 1177 PLYVIDAKQEGNLGRFLN----HSCD----PNLHVQNVFVDTHDLRFPWVAFFTRKYVKAGTELTWDYQYEQGQVATKE 1247 (1262)
T ss_pred ceEEEecccccchhhhhc----cCCC----ccceeeeeeeeccccCCchhhhhhhhhhccCceeeeeccccccccccce
Confidence 467899999999999999 9999 9999999999764 78999999999999999999998877777754
No 9
>COG2940 Proteins containing SET domain [General function prediction only]
Probab=99.42 E-value=3.1e-14 Score=141.98 Aligned_cols=123 Identities=27% Similarity=0.344 Sum_probs=96.3
Q ss_pred cCCCCccEEeecCCCceeEEEccCCCCCCeEEEccceeeccccccc----C-CCCceeeeecccCCCCcEEEeCCCCCCe
Q 019353 204 RGEWPPLMVEYDPKEGFTVQADRFIKDLTIITEYVGDVDYLNNREN----D-DGDSTMTLLHASNPAQSLVVCPYKHGNI 278 (342)
Q Consensus 204 ~~~~~~~~v~~~~~~G~Gv~a~~~i~~g~~I~ey~Gev~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~iDa~~~GN~ 278 (342)
.....+..+..+...|+||||...|++|++|.+|.|+++...+... . .....+.+... . ....++|+...|+.
T Consensus 328 ~~~~~~~~~~~~~~~~~g~fa~~~i~~~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~d~~~~g~~ 405 (480)
T COG2940 328 KKRREPNVVQESEIKGYGVFALESIKKGEFIIEYHGEIIRRKEAREREENYDLLGNEFSFGLL-E-DKDKVRDSQKAGDV 405 (480)
T ss_pred ccccchhhhhhhcccccceeehhhccchHHHHHhcCcccchHHHHhhhccccccccccchhhc-c-ccchhhhhhhcccc
Confidence 3445566777888999999999999999999999999875422211 1 11122222211 2 13889999999999
Q ss_pred eeeccCCCCCCCCCCCCCCcEEEEEEECCeEEEEEEEcCCCCCCCeEEEecCCCCCCC
Q 019353 279 ARFVNGINNHTADGKKKQNLKCVRYNVNGECRVLLVANRDIAKGERLYYDYNGYEKEY 336 (342)
Q Consensus 279 aRfin~~~~hSC~~~~~pN~~~~~~~~~~~~~i~l~A~rdI~~GEELt~dY~~~~~~~ 336 (342)
+||+| |||. |||+.....++|..++.++|+|||.+||||++||++.....
T Consensus 406 ~r~~n----HS~~----pN~~~~~~~~~g~~~~~~~~~rDI~~geEl~~dy~~~~~~~ 455 (480)
T COG2940 406 ARFIN----HSCT----PNCEASPIEVNGIFKISIYAIRDIKAGEELTYDYGPSLEDN 455 (480)
T ss_pred cceee----cCCC----CCcceecccccccceeeecccccchhhhhhccccccccccc
Confidence 99999 9999 99999988888888999999999999999999999765543
No 10
>PF00856 SET: SET domain; InterPro: IPR001214 The SET domain appears generally as one part of a larger multidomain protein, and recently there were described three structures of very different proteins with distinct domain compositions: Neurospora crassa DIM-5, a member of the Su(var) family of HKMTs which methylate histone H3 on lysine 9,human SET7 (also called SET9), which methylates H3 on lysine 4 and garden pea Rubisco LSMT, an enzyme that does not modify histones, but instead methylates lysine 14 in the flexible tail of the large subunit of the enzyme Rubisco. The SET domain itself turned out to be an uncommon structure. Although in all three studies, electron density maps revealed the location of the AdoMet or AdoHcy cofactor, the SET domain bears no similarity at all to the canonical/AdoMet-dependent methyltransferase fold. Strictly conserved in the C-terminal motif of the SET domain tyrosine could be involved in abstracting a proton from the protonated amino group of the substrate lysine, promoting its nucleophilic attack on the sulphonium methyl group of the AdoMet cofactor. In contrast to the AdoMet-dependent protein methyltranferases of the classical type, which tend to bind their polypeptide substrates on top of the cofactor, it is noted from the Rubisco LSMT structure that the AdoMet seems to bind in a separate cleft, suggesting how a polypeptide substrate could be subjected to multiple rounds of methylation without having to be released from the enzyme. In contrast, SET7/9 is able to add only a single methyl group to its substrate. It has been demonstrated that association of SET domain and myotubularin-related proteins modulates growth control []. The SET domain-containing Drosophila melanogaster (Fruit fly) protein, enhancer of zeste, has a function in segment determination and the mammalian homologue may be involved in the regulation of gene transcription and chromatin structure. Histone lysine methylation is part of the histone code that regulated chromatin function and epigenetic control of gene function. Histone lysine methyltransferases (HMTase) differ both in their substrate specificity for the various acceptor lysines as well as in their product specificity for the number of methyl groups (one, two, or three) they transfer. With just one exception [], the HMTases belong to SET family that can be classified according to the sequences surrounding the SET domain [, ]. Structural studies on the human SET7/9, a mono-methylase, have revealed the molecular basis for the specificity of the enzyme for the histone-target and the roles of the invariant residues in the SET domain in determining the methylation specificities []. The pre-SET domain, as found in the SUV39 SET family, contains nine invariant cysteine residues that are grouped into two segments separated by a region of variable length. These 9 cysteines coordinate 3 zinc ions to form to form a triangular cluster, where each of the zinc ions is coordinated by 4 four cysteines to give a tetrahedral configuration. The function of this domain is structural, holding together 2 long segments of random coils. The C-terminal region including the post-SET domain is disordered when not interacting with a histone tail and in the absence of zinc. The three conserved cysteines in the post-SET domain form a zinc-binding site when coupled to a fourth conserved cysteine in the knot-like structure close to the SET domain active site []. The structured post-SET region brings in the C-terminal residues that participate in S-adenosylmethine-binding and histone tail interactions. The three conserved cysteine residues are essential for HMTase activity, as replacement with serine abolishes HMTase activity [], []. ; GO: 0005515 protein binding; PDB: 3TG5_A 3S7F_A 3RIB_B 3TG4_A 3S7J_A 3S7D_A 3S7B_A 3H6L_A 3SMT_A 3K5K_A ....
Probab=99.33 E-value=1.1e-12 Score=110.07 Aligned_cols=55 Identities=24% Similarity=0.221 Sum_probs=45.7
Q ss_pred EEEeCCCCCCeeeeccCCCCCCCCCCCCCCcEEEEEEECCeEEEEEEEcCCCCCCCeEEEecC
Q 019353 268 LVVCPYKHGNIARFVNGINNHTADGKKKQNLKCVRYNVNGECRVLLVANRDIAKGERLYYDYN 330 (342)
Q Consensus 268 ~~iDa~~~GN~aRfin~~~~hSC~~~~~pN~~~~~~~~~~~~~i~l~A~rdI~~GEELt~dY~ 330 (342)
...++.....++.|+| |||. |||.+......+...+.|+|.|||++|||||++||
T Consensus 108 ~~~~~~~l~p~~d~~N----Hsc~----pn~~~~~~~~~~~~~~~~~a~r~I~~GeEi~isYG 162 (162)
T PF00856_consen 108 DDRDGIALYPFADMLN----HSCD----PNCEVSFDFDGDGGCLVVRATRDIKKGEEIFISYG 162 (162)
T ss_dssp EEEEEEEEETGGGGSE----EESS----TSEEEEEEEETTTTEEEEEESS-B-TTSBEEEEST
T ss_pred ccccccccCcHhHhec----cccc----cccceeeEeecccceEEEEECCccCCCCEEEEEEC
Confidence 3455666678899999 9999 99988877667788999999999999999999997
No 11
>KOG1081 consensus Transcription factor NSD1 and related SET domain proteins [Transcription]
Probab=99.03 E-value=2.3e-10 Score=112.69 Aligned_cols=93 Identities=31% Similarity=0.451 Sum_probs=71.9
Q ss_pred EEccCCCCCCeEEEccceeecccccc--------cCCCCceeeeecccCCCCcEEEeCCCCCCeeeeccCCCCCCCCCCC
Q 019353 223 QADRFIKDLTIITEYVGDVDYLNNRE--------NDDGDSTMTLLHASNPAQSLVVCPYKHGNIARFVNGINNHTADGKK 294 (342)
Q Consensus 223 ~a~~~i~~g~~I~ey~Gev~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~iDa~~~GN~aRfin~~~~hSC~~~~ 294 (342)
+|..+|.++ +|+++...... ....+.++.++ . ....||+..+||..||+| |||+
T Consensus 319 ~~~~~~~k~------vg~~i~~~e~~~~~~~~~~~~~~~~~~~~~---e--~~~~id~~~~~n~sr~~n----h~~~--- 380 (463)
T KOG1081|consen 319 TAKADIRKG------VGEVIDDKECKARLQRVKESDLVDFYMVFI---Q--KDRIIDAGPKGNYSRFLN----HSCQ--- 380 (463)
T ss_pred hhHHhhhcc------cCcccchhhheeehhhhhccchhhhhhhhh---h--cccccccccccchhhhhc----ccCC---
Confidence 777888887 77775432111 11222222222 1 223999999999999999 9999
Q ss_pred CCCcEEEEEEECCeEEEEEEEcCCCCCCCeEEEecCCCCC
Q 019353 295 KQNLKCVRYNVNGECRVLLVANRDIAKGERLYYDYNGYEK 334 (342)
Q Consensus 295 ~pN~~~~~~~~~~~~~i~l~A~rdI~~GEELt~dY~~~~~ 334 (342)
|||+...+.+.+..++.++|.+.|++|||||++|++.-.
T Consensus 381 -~~v~~~k~~~~~~t~~~~~a~~~i~~g~e~t~~~n~~~~ 419 (463)
T KOG1081|consen 381 -PNVETEKWQVIGDTRVGLFAPRQIEAGEELTFNYNGNCE 419 (463)
T ss_pred -Cceeechhheecccccccccccccccchhhhheeecccc
Confidence 999999999999999999999999999999999998643
No 12
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=98.96 E-value=1.7e-10 Score=79.15 Aligned_cols=48 Identities=33% Similarity=1.021 Sum_probs=41.9
Q ss_pred ccccccccCCCCCeeecCCCCcccccCccCCCCC--CCCCCCccCccCcc
Q 019353 29 RCEKCGSGDFPDELLLCDKCDKGFHLFCLRPILV--SVPKGSWFCPSCSH 76 (342)
Q Consensus 29 ~C~iC~~~~~~g~~i~Cd~C~~~~H~~C~~p~~~--~~p~~~w~C~~C~~ 76 (342)
+|.+|+..++++.||+|+.|..|||..|++|+.. ..+...|+|+.|..
T Consensus 1 ~C~vC~~~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~~ 50 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCRP 50 (51)
T ss_dssp EBTTTTSSCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHHH
T ss_pred eCcCCCCcCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCcC
Confidence 5889999888999999999999999999999977 34445899999964
No 13
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=98.91 E-value=3.5e-10 Score=100.59 Aligned_cols=59 Identities=41% Similarity=0.982 Sum_probs=55.2
Q ss_pred CCCCCCcccccccccccccCCCCCeeecCCCCcccccCccCCCCCCCCCCCccCccCcc
Q 019353 18 ITYESPDDDDSRCEKCGSGDFPDELLLCDKCDKGFHLFCLRPILVSVPKGSWFCPSCSH 76 (342)
Q Consensus 18 ~~~~~d~~~~~~C~iC~~~~~~g~~i~Cd~C~~~~H~~C~~p~~~~~p~~~w~C~~C~~ 76 (342)
..|-|+.-+...|.|||..++|+.+++||.|+++||+.|+.||+...|+|.|.|..|..
T Consensus 272 k~yrwqcieck~csicgtsenddqllfcddcdrgyhmyclsppm~eppegswsc~KOG~ 330 (336)
T KOG1244|consen 272 KTYRWQCIECKYCSICGTSENDDQLLFCDDCDRGYHMYCLSPPMVEPPEGSWSCHLCLE 330 (336)
T ss_pred HhheeeeeecceeccccCcCCCceeEeecccCCceeeEecCCCcCCCCCCchhHHHHHH
Confidence 35777888999999999999999999999999999999999999999999999999975
No 14
>KOG2461 consensus Transcription factor BLIMP-1/PRDI-BF1, contains C2H2-type Zn-finger and SET domains [Transcription]
Probab=98.74 E-value=1.5e-08 Score=97.69 Aligned_cols=118 Identities=19% Similarity=0.164 Sum_probs=88.0
Q ss_pred CCCccEEeecCC--CceeEEEccCCCCCCeEEEccceeecccccccCCCCceeeeecccCCCCcEEEeCCC--CCCeeee
Q 019353 206 EWPPLMVEYDPK--EGFTVQADRFIKDLTIITEYVGDVDYLNNRENDDGDSTMTLLHASNPAQSLVVCPYK--HGNIARF 281 (342)
Q Consensus 206 ~~~~~~v~~~~~--~G~Gv~a~~~i~~g~~I~ey~Gev~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDa~~--~GN~aRf 281 (342)
..+.|+++.+.+ .|.||++...|.+|+--+-|.|+++.. ......++.||..++..+ ..-.+||+.. ..|++||
T Consensus 26 LP~~l~i~~Ssv~~~~lgV~s~~~i~~G~~FGP~~G~~~~~-~~~~~~n~~y~W~I~~~d-~~~~~iDg~d~~~sNWmRY 103 (396)
T KOG2461|consen 26 LPPELRIKPSSVPVTGLGVWSNASILPGTSFGPFEGEIIAS-IDSKSANNRYMWEIFSSD-NGYEYIDGTDEEHSNWMRY 103 (396)
T ss_pred CCCceEeeccccCCccccccccccccCcccccCccCccccc-cccccccCcceEEEEeCC-CceEEeccCChhhcceeee
Confidence 455688888776 778999999999999999999998211 122223455566665444 3568899874 7899999
Q ss_pred ccCCCCCCCCCCCCCCcEEEEEEECCeEEEEEEEcCCCCCCCeEEEecCCCCC
Q 019353 282 VNGINNHTADGKKKQNLKCVRYNVNGECRVLLVANRDIAKGERLYYDYNGYEK 334 (342)
Q Consensus 282 in~~~~hSC~~~~~pN~~~~~~~~~~~~~i~l~A~rdI~~GEELt~dY~~~~~ 334 (342)
+| -.+. .+..|+.. +.....|++.|+|+|++||||.+.|+.++.
T Consensus 104 V~----~Ar~-~eeQNL~A----~Q~~~~Ifyrt~r~I~p~eELlVWY~~e~~ 147 (396)
T KOG2461|consen 104 VN----SARS-EEEQNLLA----FQIGENIFYRTIRDIRPNEELLVWYGSEYA 147 (396)
T ss_pred ec----ccCC-hhhhhHHH----HhccCceEEEecccCCCCCeEEEEeccchH
Confidence 98 5555 33478855 344567999999999999999999997654
No 15
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=98.48 E-value=7.1e-08 Score=89.28 Aligned_cols=52 Identities=33% Similarity=0.897 Sum_probs=43.0
Q ss_pred CcccccccccccccCCCCCeeecCC--CC-cccccCccCCCCCCCCCCCccCccCccCC
Q 019353 23 PDDDDSRCEKCGSGDFPDELLLCDK--CD-KGFHLFCLRPILVSVPKGSWFCPSCSHHK 78 (342)
Q Consensus 23 d~~~~~~C~iC~~~~~~g~~i~Cd~--C~-~~~H~~C~~p~~~~~p~~~w~C~~C~~~~ 78 (342)
|+++..+| +|.+ ..-|.||-||. |+ .|||+.|++ |...|.|.|||+.|....
T Consensus 215 d~~e~~yC-~Cnq-vsyg~Mi~CDn~~C~~eWFH~~CVG--L~~~PkgkWyC~~C~~~~ 269 (274)
T KOG1973|consen 215 DPDEPTYC-ICNQ-VSYGKMIGCDNPGCPIEWFHFTCVG--LKTKPKGKWYCPRCKAEN 269 (274)
T ss_pred CCCCCEEE-Eecc-cccccccccCCCCCCcceEEEeccc--cccCCCCcccchhhhhhh
Confidence 66667777 4442 34599999998 99 999999999 889999999999998754
No 17
>KOG4299 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.43 E-value=8.6e-08 Score=94.87 Aligned_cols=52 Identities=35% Similarity=1.003 Sum_probs=45.3
Q ss_pred ccccccccccCCCCCeeecCCCCcccccCccCCC--CCCCCCCCccCccCccCC
Q 019353 27 DSRCEKCGSGDFPDELLLCDKCDKGFHLFCLRPI--LVSVPKGSWFCPSCSHHK 78 (342)
Q Consensus 27 ~~~C~iC~~~~~~g~~i~Cd~C~~~~H~~C~~p~--~~~~p~~~w~C~~C~~~~ 78 (342)
+++|..|++.+.-..+|+||+|++.||+.|+.|| ...+|.|.|+|+.|....
T Consensus 253 ~~fCsaCn~~~~F~~~i~CD~Cp~sFH~~CLePPl~~eniP~g~W~C~ec~~k~ 306 (613)
T KOG4299|consen 253 EDFCSACNGSGLFNDIICCDGCPRSFHQTCLEPPLEPENIPPGSWFCPECKIKS 306 (613)
T ss_pred HHHHHHhCCccccccceeecCCchHHHHhhcCCCCCcccCCCCccccCCCeeee
Confidence 5699999998544556999999999999999999 467999999999998853
No 18
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.39 E-value=1e-07 Score=95.75 Aligned_cols=51 Identities=41% Similarity=1.055 Sum_probs=47.3
Q ss_pred cccccccccccCCCCCeeecCCCCcc-cccCccCCCCCCCCCCCccCccCcc
Q 019353 26 DDSRCEKCGSGDFPDELLLCDKCDKG-FHLFCLRPILVSVPKGSWFCPSCSH 76 (342)
Q Consensus 26 ~~~~C~iC~~~~~~g~~i~Cd~C~~~-~H~~C~~p~~~~~p~~~w~C~~C~~ 76 (342)
+..-|.||...+..+-||+||.|+.. ||+.||+|++.++|.++|+|..|.-
T Consensus 214 E~~~C~IC~~~DpEdVLLLCDsCN~~~YH~YCLDPdl~eiP~~eWYC~NC~d 265 (1134)
T KOG0825|consen 214 EEVKCDICTVHDPEDVLLLCDSCNKVYYHVYCLDPDLSESPVNEWYCTNCSL 265 (1134)
T ss_pred ccccceeeccCChHHhheeecccccceeeccccCcccccccccceecCcchh
Confidence 45679999999888999999999998 9999999999999999999999965
No 19
>KOG2589 consensus Histone tail methylase [Chromatin structure and dynamics]
Probab=98.37 E-value=3.3e-07 Score=85.22 Aligned_cols=102 Identities=22% Similarity=0.227 Sum_probs=72.6
Q ss_pred CCCceeEEEccCCCCCCeEEEccceeeccccccc------CCCCceeeeecccCCCCcEEEeCCCCCCeeeeccCCCCCC
Q 019353 216 PKEGFTVQADRFIKDLTIITEYVGDVDYLNNREN------DDGDSTMTLLHASNPAQSLVVCPYKHGNIARFVNGINNHT 289 (342)
Q Consensus 216 ~~~G~Gv~a~~~i~~g~~I~ey~Gev~~~~~~~~------~~~~~~~~~~~~~~~~~~~~iDa~~~GN~aRfin~~~~hS 289 (342)
...|--|++++.+.+|+-|--.+|-|......+. ...++-..+-...+ ...+.+ .-|+||| |-
T Consensus 135 ~~~gAkivst~~w~~ndkIe~LvGcIaeLse~eE~~ll~~g~nDFSvmyStRk~-caqLwL------GPaafIN----HD 203 (453)
T KOG2589|consen 135 SQNGAKIVSTKSWSRNDKIELLVGCIAELSEAEERSLLRGGGNDFSVMYSTRKR-CAQLWL------GPAAFIN----HD 203 (453)
T ss_pred cCCCceEEeeccccCCccHHHhhhhhhhcChhhhHHHHhccCCceeeeeecccc-hhhhee------ccHHhhc----CC
Confidence 3578889999999999999999999964432221 12222222221111 122333 3479999 99
Q ss_pred CCCCCCCCcEEEEEEECCeEEEEEEEcCCCCCCCeEEEecCCCCCC
Q 019353 290 ADGKKKQNLKCVRYNVNGECRVLLVANRDIAKGERLYYDYNGYEKE 335 (342)
Q Consensus 290 C~~~~~pN~~~~~~~~~~~~~i~l~A~rdI~~GEELt~dY~~~~~~ 335 (342)
|. |||++. .-|..++.+-++|||++|||||.=|+.+++.
T Consensus 204 Cr----pnCkFv---s~g~~tacvkvlRDIePGeEITcFYgs~fFG 242 (453)
T KOG2589|consen 204 CR----PNCKFV---STGRDTACVKVLRDIEPGEEITCFYGSGFFG 242 (453)
T ss_pred CC----CCceee---cCCCceeeeehhhcCCCCceeEEeecccccC
Confidence 99 999884 4577889999999999999999999976653
No 20
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.30 E-value=2.4e-07 Score=83.30 Aligned_cols=59 Identities=32% Similarity=0.725 Sum_probs=52.6
Q ss_pred CCCCCCcccccccccccccCCCCCeeecCCCCcccccCccCCCCCCCCCCCccCc-cCccCC
Q 019353 18 ITYESPDDDDSRCEKCGSGDFPDELLLCDKCDKGFHLFCLRPILVSVPKGSWFCP-SCSHHK 78 (342)
Q Consensus 18 ~~~~~d~~~~~~C~iC~~~~~~g~~i~Cd~C~~~~H~~C~~p~~~~~p~~~w~C~-~C~~~~ 78 (342)
-.|.|...+...|.||++.+..+++++||.|+++||..|++ |..+|.|.|+|. .|....
T Consensus 305 KTY~W~C~~C~lC~IC~~P~~E~E~~FCD~CDRG~HT~CVG--L~~lP~G~WICD~~C~~~~ 364 (381)
T KOG1512|consen 305 KTYFWKCSSCELCRICLGPVIESEHLFCDVCDRGPHTLCVG--LQDLPRGEWICDMRCREAT 364 (381)
T ss_pred hhcchhhcccHhhhccCCcccchheeccccccCCCCccccc--cccccCccchhhhHHHHhc
Confidence 35778888999999999998889999999999999999999 999999999996 676543
No 21
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=97.98 E-value=3.6e-06 Score=86.04 Aligned_cols=54 Identities=41% Similarity=0.927 Sum_probs=48.5
Q ss_pred CCcccccccccccccCCCCCeeecCCCCcccccCccCCCCCCCCCCCccCccCccCC
Q 019353 22 SPDDDDSRCEKCGSGDFPDELLLCDKCDKGFHLFCLRPILVSVPKGSWFCPSCSHHK 78 (342)
Q Consensus 22 ~d~~~~~~C~iC~~~~~~g~~i~Cd~C~~~~H~~C~~p~~~~~p~~~w~C~~C~~~~ 78 (342)
++..+...|.||+.+ |.+++||.|..+||..|+++|+...|.++|.|++|....
T Consensus 42 ~~~~~~e~c~ic~~~---g~~l~c~tC~~s~h~~cl~~pl~~~p~~~~~c~Rc~~p~ 95 (696)
T KOG0383|consen 42 WDDAEQEACRICADG---GELLWCDTCPASFHASCLGPPLTPQPNGEFICPRCFCPK 95 (696)
T ss_pred cchhhhhhhhhhcCC---CcEEEeccccHHHHHHccCCCCCcCCccceeeeeeccCC
Confidence 456667889999998 999999999999999999999999999889999996643
No 22
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=97.93 E-value=7.9e-06 Score=72.73 Aligned_cols=47 Identities=36% Similarity=0.971 Sum_probs=39.6
Q ss_pred cccccccccccCCCCCeeecCC--CC-cccccCccCCCCCCCCCCCccCccCcc
Q 019353 26 DDSRCEKCGSGDFPDELLLCDK--CD-KGFHLFCLRPILVSVPKGSWFCPSCSH 76 (342)
Q Consensus 26 ~~~~C~iC~~~~~~g~~i~Cd~--C~-~~~H~~C~~p~~~~~p~~~w~C~~C~~ 76 (342)
+..+| -|++. .-|.||-||. |. .|||+.|++ |...|+|.|+|+.|..
T Consensus 220 e~lYC-fCqqv-SyGqMVaCDn~nCkrEWFH~~CVG--Lk~pPKG~WYC~eCk~ 269 (271)
T COG5034 220 EELYC-FCQQV-SYGQMVACDNANCKREWFHLECVG--LKEPPKGKWYCPECKK 269 (271)
T ss_pred ceeEE-Eeccc-ccccceecCCCCCchhheeccccc--cCCCCCCcEeCHHhHh
Confidence 34455 67775 4489999996 88 899999999 9999999999999975
No 23
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=97.85 E-value=1e-05 Score=67.01 Aligned_cols=28 Identities=61% Similarity=1.362 Sum_probs=26.3
Q ss_pred ccccCccCCCCCCCCCCCccCccCccCC
Q 019353 51 GFHLFCLRPILVSVPKGSWFCPSCSHHK 78 (342)
Q Consensus 51 ~~H~~C~~p~~~~~p~~~w~C~~C~~~~ 78 (342)
+||+.|+.|||..+|+|+|+|+.|...+
T Consensus 1 g~H~~CL~Ppl~~~P~g~W~Cp~C~~~~ 28 (148)
T cd04718 1 GFHLCCLRPPLKEVPEGDWICPFCEVEK 28 (148)
T ss_pred CcccccCCCCCCCCCCCCcCCCCCcCCC
Confidence 5899999999999999999999999865
No 24
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=97.80 E-value=1.1e-05 Score=78.46 Aligned_cols=52 Identities=31% Similarity=0.825 Sum_probs=42.0
Q ss_pred cccccccccc--CCCCCeeecCCCCcccccCccCCCCCCC----CCCCccCccCccCC
Q 019353 27 DSRCEKCGSG--DFPDELLLCDKCDKGFHLFCLRPILVSV----PKGSWFCPSCSHHK 78 (342)
Q Consensus 27 ~~~C~iC~~~--~~~g~~i~Cd~C~~~~H~~C~~p~~~~~----p~~~w~C~~C~~~~ 78 (342)
...|++|..+ .....||+|++|..|||..|+.|..... +..+|+|..|..+.
T Consensus 168 n~qc~vC~~g~~~~~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~~~~ 225 (464)
T KOG4323|consen 168 NLQCSVCYCGGPGAGNRMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFCDVCNRGP 225 (464)
T ss_pred cceeeeeecCCcCccceeeeecccccHHHHHhccCCCCHhhccCccceEeehhhccch
Confidence 4559998865 3445999999999999999999987543 55689999998864
No 25
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=97.69 E-value=2.1e-05 Score=83.62 Aligned_cols=55 Identities=25% Similarity=0.756 Sum_probs=47.1
Q ss_pred CCcccccccccccccCCC--CCeeecCCCCcccccCccCCCCCCCCCCCccCccCccCC
Q 019353 22 SPDDDDSRCEKCGSGDFP--DELLLCDKCDKGFHLFCLRPILVSVPKGSWFCPSCSHHK 78 (342)
Q Consensus 22 ~d~~~~~~C~iC~~~~~~--g~~i~Cd~C~~~~H~~C~~p~~~~~p~~~w~C~~C~~~~ 78 (342)
.+.+.+..|+||..++-. ...++||.|+..+|+.|++ ..-+|++.|+|..|....
T Consensus 214 ~~~~~D~~C~iC~~~~~~n~n~ivfCD~Cnl~VHq~Cyg--i~~ipeg~WlCr~Cl~s~ 270 (1051)
T KOG0955|consen 214 ALLEEDAVCCICLDGECQNSNVIVFCDGCNLAVHQECYG--IPFIPEGQWLCRRCLQSP 270 (1051)
T ss_pred cccCCCccceeecccccCCCceEEEcCCCcchhhhhccC--CCCCCCCcEeehhhccCc
Confidence 445667899999998655 7999999999999999999 456889999999998753
No 26
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=97.60 E-value=2.1e-05 Score=78.60 Aligned_cols=50 Identities=34% Similarity=0.905 Sum_probs=43.0
Q ss_pred cccccccccC--CCCCeeecCC--CCcccccCccCCCCCCCCCCCccCccCccCCC
Q 019353 28 SRCEKCGSGD--FPDELLLCDK--CDKGFHLFCLRPILVSVPKGSWFCPSCSHHKR 79 (342)
Q Consensus 28 ~~C~iC~~~~--~~g~~i~Cd~--C~~~~H~~C~~p~~~~~p~~~w~C~~C~~~~~ 79 (342)
.-||||.... .+..+|.||+ |..+.|..||+ +..+|.|.|||..|....+
T Consensus 6 GGCCVCSDErGWaeNPLVYCDG~nCsVAVHQaCYG--IvqVPtGpWfCrKCesqer 59 (900)
T KOG0956|consen 6 GGCCVCSDERGWAENPLVYCDGHNCSVAVHQACYG--IVQVPTGPWFCRKCESQER 59 (900)
T ss_pred cceeeecCcCCCccCceeeecCCCceeeeehhcce--eEecCCCchhhhhhhhhhh
Confidence 4599998753 5679999996 99999999999 7899999999999987543
No 27
>KOG0954 consensus PHD finger protein [General function prediction only]
Probab=97.55 E-value=2.6e-05 Score=78.60 Aligned_cols=51 Identities=37% Similarity=0.974 Sum_probs=44.9
Q ss_pred ccccccccccccC--CCCCeeecCCCCcccccCccCCCCCCCCCCCccCccCccC
Q 019353 25 DDDSRCEKCGSGD--FPDELLLCDKCDKGFHLFCLRPILVSVPKGSWFCPSCSHH 77 (342)
Q Consensus 25 ~~~~~C~iC~~~~--~~g~~i~Cd~C~~~~H~~C~~p~~~~~p~~~w~C~~C~~~ 77 (342)
++..+|.+|..++ ...+||+||.|....|+.|++ +..+|++.|+|..|.-+
T Consensus 269 dedviCDvCrspD~e~~neMVfCd~Cn~cVHqaCyG--Ile~p~gpWlCr~Calg 321 (893)
T KOG0954|consen 269 DEDVICDVCRSPDSEEANEMVFCDKCNICVHQACYG--ILEVPEGPWLCRTCALG 321 (893)
T ss_pred cccceeceecCCCccccceeEEeccchhHHHHhhhc--eeecCCCCeeehhcccc
Confidence 4778999999873 457999999999999999999 78899999999999653
No 28
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.
Probab=97.53 E-value=1.3e-05 Score=50.53 Aligned_cols=34 Identities=38% Similarity=1.049 Sum_probs=19.5
Q ss_pred CCeeecCCCCcccccCccCCCCCCCCCC-CccCccCc
Q 019353 40 DELLLCDKCDKGFHLFCLRPILVSVPKG-SWFCPSCS 75 (342)
Q Consensus 40 g~~i~Cd~C~~~~H~~C~~p~~~~~p~~-~w~C~~C~ 75 (342)
+.+|.|+.|....|..|++.. ..+.+ +|+|..|.
T Consensus 2 n~ll~C~~C~v~VH~~CYGv~--~~~~~~~W~C~~C~ 36 (36)
T PF13831_consen 2 NPLLFCDNCNVAVHQSCYGVS--EVPDGDDWLCDRCE 36 (36)
T ss_dssp CEEEE-SSS--EEEHHHHT-S--S--SS-----HHH-
T ss_pred CceEEeCCCCCcCChhhCCcc--cCCCCCcEECCcCC
Confidence 579999999999999999944 44444 69999884
No 29
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=97.52 E-value=3.6e-05 Score=74.25 Aligned_cols=57 Identities=30% Similarity=0.740 Sum_probs=47.0
Q ss_pred CCCCcccccccccccccCC--CCCeeecCCCCcccccCccCCCCCCCCCCCccCccCccCC
Q 019353 20 YESPDDDDSRCEKCGSGDF--PDELLLCDKCDKGFHLFCLRPILVSVPKGSWFCPSCSHHK 78 (342)
Q Consensus 20 ~~~d~~~~~~C~iC~~~~~--~g~~i~Cd~C~~~~H~~C~~p~~~~~p~~~w~C~~C~~~~ 78 (342)
+.+++.=+.+|.+|..++. -+.+++||+|....|..|++ +.-+|+|.|+|..|.-+.
T Consensus 186 i~~~d~~d~~C~~c~~t~~eN~naiVfCdgC~i~VHq~CYG--I~f~peG~WlCrkCi~~~ 244 (669)
T COG5141 186 IEPSDEFDDICTKCTSTHNENSNAIVFCDGCEICVHQSCYG--IQFLPEGFWLCRKCIYGE 244 (669)
T ss_pred cCCchhhhhhhHhccccccCCcceEEEecCcchhhhhhccc--ceecCcchhhhhhhcccc
Confidence 4445555789999999854 36789999999999999999 567899999999997653
No 30
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=97.51 E-value=3.2e-05 Score=74.78 Aligned_cols=51 Identities=33% Similarity=0.795 Sum_probs=45.4
Q ss_pred ccccccccccCCCCCeeecCCCCcccccCccCCCCCCCCCC----CccCccCccC
Q 019353 27 DSRCEKCGSGDFPDELLLCDKCDKGFHLFCLRPILVSVPKG----SWFCPSCSHH 77 (342)
Q Consensus 27 ~~~C~iC~~~~~~g~~i~Cd~C~~~~H~~C~~p~~~~~p~~----~w~C~~C~~~ 77 (342)
...|.||....|-..+++||.|..-||+.|+.|||+.+|.. -|.|..|...
T Consensus 544 ~ysCgiCkks~dQHll~~CDtC~lhYHlGCL~PPLTR~Pkk~kn~gWqCsECdk~ 598 (707)
T KOG0957|consen 544 NYSCGICKKSTDQHLLTQCDTCHLHYHLGCLSPPLTRLPKKNKNFGWQCSECDKN 598 (707)
T ss_pred ceeeeeeccchhhHHHhhcchhhceeeccccCCccccCcccccCcceeecccccc
Confidence 35699999998888999999999999999999999999875 4999999553
No 31
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=97.30 E-value=4.3e-05 Score=84.24 Aligned_cols=53 Identities=49% Similarity=1.166 Sum_probs=49.7
Q ss_pred cccccccccccCCCCCeeecCCCCcccccCccCCCCCCCCCCCccCccCccCC
Q 019353 26 DDSRCEKCGSGDFPDELLLCDKCDKGFHLFCLRPILVSVPKGSWFCPSCSHHK 78 (342)
Q Consensus 26 ~~~~C~iC~~~~~~g~~i~Cd~C~~~~H~~C~~p~~~~~p~~~w~C~~C~~~~ 78 (342)
....|.+|....++..|+.|+.|..++|+.|+.|.+...|.++|+|+.|.+..
T Consensus 1107 ~~~~c~~cr~k~~~~~m~lc~~c~~~~h~~C~rp~~~~~~~~dW~C~~c~~e~ 1159 (1404)
T KOG1245|consen 1107 VNALCKVCRRKKQDEKMLLCDECLSGFHLFCLRPALSSVPPGDWMCPSCRKEH 1159 (1404)
T ss_pred chhhhhhhhhcccchhhhhhHhhhhhHHHHhhhhhhccCCcCCccCCccchhh
Confidence 46789999999888999999999999999999999999999999999999975
No 32
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=97.23 E-value=0.00014 Score=72.67 Aligned_cols=54 Identities=35% Similarity=0.946 Sum_probs=48.2
Q ss_pred CcccccccccccccCCCCCeeecCCCCcccccCccCCCCCCCCCCCccCccCcc
Q 019353 23 PDDDDSRCEKCGSGDFPDELLLCDKCDKGFHLFCLRPILVSVPKGSWFCPSCSH 76 (342)
Q Consensus 23 d~~~~~~C~iC~~~~~~g~~i~Cd~C~~~~H~~C~~p~~~~~p~~~w~C~~C~~ 76 (342)
-.-+..+|..|+.+.|+...++|+.|+..||..|..|+...++.+.|+|..|..
T Consensus 64 rC~~crvCe~c~~~gD~~kf~~Ck~cDvsyh~yc~~P~~~~v~sg~~~ckk~~~ 117 (694)
T KOG4443|consen 64 RCPSCRVCEACGTTGDPKKFLLCKRCDVSYHCYCQKPPNDKVPSGPWLCKKCTR 117 (694)
T ss_pred ccCCceeeeeccccCCcccccccccccccccccccCCccccccCcccccHHHHh
Confidence 344567899999999999999999999999999999999999999999988744
No 33
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=96.83 E-value=0.00096 Score=64.80 Aligned_cols=61 Identities=31% Similarity=0.582 Sum_probs=44.7
Q ss_pred CCCCCCCccccccccccccc--CCCCCeeecCCCCcccccCccCCCC-CCCCC-------CCccCccCccC
Q 019353 17 PITYESPDDDDSRCEKCGSG--DFPDELLLCDKCDKGFHLFCLRPIL-VSVPK-------GSWFCPSCSHH 77 (342)
Q Consensus 17 ~~~~~~d~~~~~~C~iC~~~--~~~g~~i~Cd~C~~~~H~~C~~p~~-~~~p~-------~~w~C~~C~~~ 77 (342)
|....+.+-.-.+|+||-.. +|.|+.|+||.|+...|-.|++-.- .+++. ..|||.-|..+
T Consensus 109 pe~~~Sapkk~~iCcVClg~rs~da~ei~qCd~CGi~VHEgCYGv~dn~si~s~~s~~stepWfCeaC~~G 179 (707)
T KOG0957|consen 109 PERTPSAPKKAVICCVCLGQRSVDAGEILQCDKCGINVHEGCYGVLDNVSIPSGSSDCSTEPWFCEACLYG 179 (707)
T ss_pred cccccCccccceEEEEeecCccccccceeeccccCceecccccccccccccCCCCccCCCCchhhhhHhcC
Confidence 33444455555699999875 6789999999999999999999541 12222 36999999775
No 34
>KOG1141 consensus Predicted histone methyl transferase [Chromatin structure and dynamics]
Probab=95.94 E-value=0.0041 Score=63.91 Aligned_cols=49 Identities=16% Similarity=0.093 Sum_probs=43.5
Q ss_pred HHhh-HHhhcCCCCccEEeecCCCceeEEEccCCCCCCeEEEccceeecc
Q 019353 196 NLCK-HMMNRGEWPPLMVEYDPKEGFTVQADRFIKDLTIITEYVGDVDYL 244 (342)
Q Consensus 196 ~~~~-~~~~~~~~~~~~v~~~~~~G~Gv~a~~~i~~g~~I~ey~Gev~~~ 244 (342)
..|. +++|.|....+.++.+..+|||++...+|.+|.|||-|.|.+...
T Consensus 786 ~~C~nrmvqhg~qvRlq~fkt~~kGWg~rclddi~~g~fVciy~g~~l~~ 835 (1262)
T KOG1141|consen 786 PDCLNRMVQHGYQVRLQRFKTIHKGWGRRCLDDITGGNFVCIYPGGALLH 835 (1262)
T ss_pred HHHHHHHhhcCceeEeeeccccccccceEeeeecCCceEEEEecchhhhh
Confidence 3444 458999999999999999999999999999999999999999654
No 35
>KOG1844 consensus PHD Zn-finger proteins [General function prediction only]
Probab=95.60 E-value=0.011 Score=59.76 Aligned_cols=51 Identities=22% Similarity=0.518 Sum_probs=43.4
Q ss_pred ccccccccccCC-CCCeeecCCCCcccccCccCCCCCCCCCCCccCccCccCC
Q 019353 27 DSRCEKCGSGDF-PDELLLCDKCDKGFHLFCLRPILVSVPKGSWFCPSCSHHK 78 (342)
Q Consensus 27 ~~~C~iC~~~~~-~g~~i~Cd~C~~~~H~~C~~p~~~~~p~~~w~C~~C~~~~ 78 (342)
...=++|+..++ +|.+++|+.|+.|+|..|++..-...| ..+.|..|.++.
T Consensus 85 ~~~~c~c~~~~~~~g~~i~c~~c~~Wqh~~C~g~~~~~~p-~~y~c~~c~~~~ 136 (508)
T KOG1844|consen 85 EISRCDCGLEDDMEGLMIQCDWCGRWQHKICCGSFKSTKP-DKYVCEICTPRN 136 (508)
T ss_pred cccccccccccCCCceeeCCcccCcccCceeeeecCCCCc-hhceeeeecccc
Confidence 445568999988 999999999999999999997766664 469999999975
No 36
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]
Probab=95.17 E-value=0.011 Score=62.72 Aligned_cols=49 Identities=35% Similarity=0.779 Sum_probs=42.9
Q ss_pred ccccccccccCCCCCeeecCCCCcccccCccCCCCCCCCCCCccCccCccCC
Q 019353 27 DSRCEKCGSGDFPDELLLCDKCDKGFHLFCLRPILVSVPKGSWFCPSCSHHK 78 (342)
Q Consensus 27 ~~~C~iC~~~~~~g~~i~Cd~C~~~~H~~C~~p~~~~~p~~~w~C~~C~~~~ 78 (342)
+..|..|... +.++||.+|++.+|+.|..||+.+.|...|-|..|..-+
T Consensus 344 ddhcrf~~d~---~~~lc~Et~prvvhlEcv~hP~~~~~s~~~e~evc~~hk 392 (1414)
T KOG1473|consen 344 DDHCRFCHDL---GDLLCCETCPRVVHLECVFHPRFAVPSAFWECEVCNIHK 392 (1414)
T ss_pred cccccccCcc---cceeecccCCceEEeeecCCccccCCCccchhhhhhhhc
Confidence 3457777766 999999999999999999999999999999999998543
No 37
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=94.21 E-value=0.026 Score=38.59 Aligned_cols=36 Identities=22% Similarity=0.678 Sum_probs=30.4
Q ss_pred cccccccccccc-CCCCCeeecCCCCcccccCccCCC
Q 019353 25 DDDSRCEKCGSG-DFPDELLLCDKCDKGFHLFCLRPI 60 (342)
Q Consensus 25 ~~~~~C~iC~~~-~~~g~~i~Cd~C~~~~H~~C~~p~ 60 (342)
+....|.+|+.. .+.++.+.|..|+..||..|+...
T Consensus 3 ~~~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~~ 39 (54)
T PF14446_consen 3 YEGCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEKA 39 (54)
T ss_pred ccCccChhhCCcccCCCCEEECCCCCCcccHHHHhhC
Confidence 456789999997 346899999999999999999743
No 38
>KOG1246 consensus DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain [General function prediction only]
Probab=94.20 E-value=0.062 Score=58.17 Aligned_cols=125 Identities=27% Similarity=0.488 Sum_probs=78.4
Q ss_pred CcccccccccccccCCCCCeeecCCCCcccccCccCCCCCCCCCCCccCccCccCCC-----CCCCCcc-----------
Q 019353 23 PDDDDSRCEKCGSGDFPDELLLCDKCDKGFHLFCLRPILVSVPKGSWFCPSCSHHKR-----PKPFPLV----------- 86 (342)
Q Consensus 23 d~~~~~~C~iC~~~~~~g~~i~Cd~C~~~~H~~C~~p~~~~~p~~~w~C~~C~~~~~-----~~~~~~~----------- 86 (342)
+......|..|..+.+. .++.|+.|...+|..|..|++..+++++|.|..|....- ...++..
T Consensus 151 ~~~~~~~~~~~~k~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gf~~~~~~yt~~~f~~ 229 (904)
T KOG1246|consen 151 EFIDYPQCNTCSKGKEE-KLLLCDSCDDSYHTYCLRPPLTRVPDGDWRCPKCIPTPESKPNYKFGFEQGSREYTLPKFEE 229 (904)
T ss_pred ccccchhhhccccCCCc-cceecccccCcccccccCCCCCcCCcCcccCCcccccccCCcccccCcCCCCCccccchhhh
Confidence 44455678899988666 555999999999999999999999999999999988621 1111100
Q ss_pred -----------------c---cceeeeecccccccccccCCchhh-hhhhccccccccccccccC-CCCCCCChHHHhhh
Q 019353 87 -----------------Q---TKIIDFFRIQRSADLTQKLTPDNL-RKRKRASGLVMSKKRRKLL-PFNPTEDPERRLQQ 144 (342)
Q Consensus 87 -----------------~---~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~k~~-p~~~~~~~~~r~k~ 144 (342)
. .--.+||++.........+.++++ ..+..+++++.....+... ...+.....|++..
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~vE~e~w~~v~~~~~~~~~~~g~d~~~~~~~s~~~~~~~~~~~~~~~~~y~~s~wnL~~ 309 (904)
T KOG1246|consen 230 YADNFKKDYFPKSKNSPDSTEDVEKEFWRLVASNLESVEVLYGADLSTKEFGSGFPKSASGPLLGSEAEKYSNSGWNLNN 309 (904)
T ss_pred HhhhhhccccccccCCCCchHHHHHHHHHhhcccccceeeeeccchhhccccccccccCCCCCCCcchhhhccCcccccc
Confidence 0 001256777776656666666665 5555666666544433332 11233344455555
Q ss_pred hhhh
Q 019353 145 MASL 148 (342)
Q Consensus 145 ~~s~ 148 (342)
+..+
T Consensus 310 i~~~ 313 (904)
T KOG1246|consen 310 IPRL 313 (904)
T ss_pred cccC
Confidence 5433
No 39
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=90.33 E-value=0.14 Score=43.27 Aligned_cols=49 Identities=27% Similarity=0.632 Sum_probs=35.3
Q ss_pred ccccccc---cCCCCCeeecCCCCcccccCccCCCCCC------CCCC--CccCccCccC
Q 019353 29 RCEKCGS---GDFPDELLLCDKCDKGFHLFCLRPILVS------VPKG--SWFCPSCSHH 77 (342)
Q Consensus 29 ~C~iC~~---~~~~g~~i~Cd~C~~~~H~~C~~p~~~~------~p~~--~w~C~~C~~~ 77 (342)
.|.+|+. ...-|.||.|-+|..+||..|+++-... +.++ -..|..|.--
T Consensus 1 ~C~~C~~~g~~~~kG~Lv~CQGCs~sYHk~CLG~Rs~ReHlVTKVg~d~FVLQCr~Cig~ 60 (175)
T PF15446_consen 1 TCDTCGYEGDDRNKGPLVYCQGCSSSYHKACLGPRSQREHLVTKVGDDDFVLQCRRCIGI 60 (175)
T ss_pred CcccccCCCCCccCCCeEEcCccChHHHhhhcCCccccceeeEEEcCCceEEechhhcCh
Confidence 3778854 3456899999999999999999987533 1222 3558888663
No 40
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=86.96 E-value=0.24 Score=47.10 Aligned_cols=47 Identities=28% Similarity=0.623 Sum_probs=39.8
Q ss_pred cccccccccCCCCCeeecCCCCcccccCccCCCCCCCCCCCccCccCccC
Q 019353 28 SRCEKCGSGDFPDELLLCDKCDKGFHLFCLRPILVSVPKGSWFCPSCSHH 77 (342)
Q Consensus 28 ~~C~iC~~~~~~g~~i~Cd~C~~~~H~~C~~p~~~~~p~~~w~C~~C~~~ 77 (342)
..|.||-..-..|+-+.==-|...||..|.+|.+..- .-+|+.|...
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~---r~~CPvCK~d 276 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQT---RTFCPVCKRD 276 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhc---CccCCCCCCc
Confidence 5999999987777777778899999999999998763 2589999885
No 41
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=86.77 E-value=0.48 Score=41.95 Aligned_cols=42 Identities=38% Similarity=0.791 Sum_probs=33.5
Q ss_pred ccccccccccC-----CCCCeeecCCCCcccccCccCCCCCCCCCCCccCccCccC
Q 019353 27 DSRCEKCGSGD-----FPDELLLCDKCDKGFHLFCLRPILVSVPKGSWFCPSCSHH 77 (342)
Q Consensus 27 ~~~C~iC~~~~-----~~g~~i~Cd~C~~~~H~~C~~p~~~~~p~~~w~C~~C~~~ 77 (342)
+.+|.+|...+ +.+.++.|..|...||..|+.. -.|+.|...
T Consensus 152 GfiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~~---------~~CpkC~R~ 198 (202)
T PF13901_consen 152 GFICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFRK---------KSCPKCARR 198 (202)
T ss_pred CCCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcCC---------CCCCCcHhH
Confidence 56799998753 3468899999999999999982 139999764
No 42
>KOG4299 consensus PHD Zn-finger protein [General function prediction only]
Probab=84.83 E-value=0.64 Score=47.09 Aligned_cols=48 Identities=35% Similarity=0.760 Sum_probs=40.0
Q ss_pred ccccccccccCCCCCeeecCCCCcccccCccCCCCCCC-CCCCccCccCccC
Q 019353 27 DSRCEKCGSGDFPDELLLCDKCDKGFHLFCLRPILVSV-PKGSWFCPSCSHH 77 (342)
Q Consensus 27 ~~~C~iC~~~~~~g~~i~Cd~C~~~~H~~C~~p~~~~~-p~~~w~C~~C~~~ 77 (342)
-..|.+|..+ |+.++|+.|+..+|..|-.+++... ....|.|..|..+
T Consensus 47 ~ts~~~~~~~---gn~~~~~~~~~s~h~~~~~~~~sp~~~~~~~~~~~~~~~ 95 (613)
T KOG4299|consen 47 ATSCGICKSG---GNLLCCDHCPASFHLECDKPPLSPDLKGSEINCSRCPKG 95 (613)
T ss_pred hhhcchhhhc---CCccccccCccccchhccCcccCcccccccccccCCCcc
Confidence 4669999998 9999999999999999999987732 2247899998774
No 43
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=84.11 E-value=0.38 Score=36.20 Aligned_cols=46 Identities=26% Similarity=0.579 Sum_probs=30.6
Q ss_pred cccccccCCCCCeeecCCCCcccccCccCCCCCCCCCCCccCccCccC
Q 019353 30 CEKCGSGDFPDELLLCDKCDKGFHLFCLRPILVSVPKGSWFCPSCSHH 77 (342)
Q Consensus 30 C~iC~~~~~~g~~i~Cd~C~~~~H~~C~~p~~~~~p~~~w~C~~C~~~ 77 (342)
|..|..++|+-.++.+ .|...||+.|+...+.... ..-.|+-|+..
T Consensus 35 Cp~Ck~Pgd~Cplv~g-~C~H~FH~hCI~kWl~~~~-~~~~CPmCR~~ 80 (85)
T PF12861_consen 35 CPDCKFPGDDCPLVWG-KCSHNFHMHCILKWLSTQS-SKGQCPMCRQP 80 (85)
T ss_pred CCCccCCCCCCceeec-cCccHHHHHHHHHHHcccc-CCCCCCCcCCe
Confidence 3345555444455544 4999999999987776542 23589999764
No 44
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=83.92 E-value=0.46 Score=37.48 Aligned_cols=31 Identities=29% Similarity=0.765 Sum_probs=27.3
Q ss_pred cccccccccccCCCCCeeecCC--CCcccccCccC
Q 019353 26 DDSRCEKCGSGDFPDELLLCDK--CDKGFHLFCLR 58 (342)
Q Consensus 26 ~~~~C~iC~~~~~~g~~i~Cd~--C~~~~H~~C~~ 58 (342)
....|.+|+.. .|.++.|.. |..+||..|..
T Consensus 54 ~~~~C~iC~~~--~G~~i~C~~~~C~~~fH~~CA~ 86 (110)
T PF13832_consen 54 FKLKCSICGKS--GGACIKCSHPGCSTAFHPTCAR 86 (110)
T ss_pred cCCcCcCCCCC--CceeEEcCCCCCCcCCCHHHHH
Confidence 46789999996 389999988 99999999976
No 45
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=81.45 E-value=0.56 Score=42.97 Aligned_cols=52 Identities=17% Similarity=0.364 Sum_probs=38.1
Q ss_pred ccccccccccccC------CCCCeeecCCCCcccccCccCCCCCC---CCCCCccCccCcc
Q 019353 25 DDDSRCEKCGSGD------FPDELLLCDKCDKGFHLFCLRPILVS---VPKGSWFCPSCSH 76 (342)
Q Consensus 25 ~~~~~C~iC~~~~------~~g~~i~Cd~C~~~~H~~C~~p~~~~---~p~~~w~C~~C~~ 76 (342)
.-..+|.+|..+. ..+.+|+|..|...+|..|+.-+... +....|.|..|.-
T Consensus 256 ~~~~~~~~~~~~~~~~~~~r~~S~I~C~~C~~~~HP~Ci~M~~elv~~~KTY~W~C~~C~l 316 (381)
T KOG1512|consen 256 QRRNERKHFWDIQTNIIQSRRNSWIVCKPCATRPHPYCVAMIPELVGQYKTYFWKCSSCEL 316 (381)
T ss_pred cchhhhhhhhcchhhhhhhhhccceeecccccCCCCcchhcCHHHHhHHhhcchhhcccHh
Confidence 3456688887642 34689999999999999999855322 3335799999854
No 46
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=80.09 E-value=1.1 Score=43.84 Aligned_cols=52 Identities=21% Similarity=0.376 Sum_probs=36.9
Q ss_pred ccccccccccC---CCCCeeecCCCCcccccCccCCCC--------CC---CCCCCccCccCccCC
Q 019353 27 DSRCEKCGSGD---FPDELLLCDKCDKGFHLFCLRPIL--------VS---VPKGSWFCPSCSHHK 78 (342)
Q Consensus 27 ~~~C~iC~~~~---~~g~~i~Cd~C~~~~H~~C~~p~~--------~~---~p~~~w~C~~C~~~~ 78 (342)
...|.||..-+ ++-..|-||.|+.|-|..|.--.. .. ..+..++|..|....
T Consensus 128 ~C~C~iC~kfD~~~n~~~Wi~Cd~CgH~cH~dCALr~~~i~~G~s~~g~~g~~d~~f~C~~C~~~s 193 (446)
T PF07227_consen 128 RCMCCICSKFDDNKNTCSWIGCDVCGHWCHLDCALRHELIGTGPSVKGSIGTLDMQFHCRACGKTS 193 (446)
T ss_pred cCCccccCCcccCCCCeeEEeccCCCceehhhhhcccccccCCccCCCCCccCceEEEccCCCChh
Confidence 35588898864 345789999999999999964221 11 124479999998853
No 47
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=78.41 E-value=0.15 Score=33.27 Aligned_cols=42 Identities=24% Similarity=0.505 Sum_probs=28.5
Q ss_pred ccccccccCC-CCCeeecCCCCcccccCccCCCCCCCCCCCccCccCc
Q 019353 29 RCEKCGSGDF-PDELLLCDKCDKGFHLFCLRPILVSVPKGSWFCPSCS 75 (342)
Q Consensus 29 ~C~iC~~~~~-~g~~i~Cd~C~~~~H~~C~~p~~~~~p~~~w~C~~C~ 75 (342)
.|.||...-. ...++... |+..||..|+...+... ..|+.|+
T Consensus 2 ~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~~~~~~----~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLP-CGHVFHRSCIKEWLKRN----NSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEET-TSEEEEHHHHHHHHHHS----SB-TTTH
T ss_pred CCcCCChhhcCCCeEEEcc-CCCeeCHHHHHHHHHhC----CcCCccC
Confidence 5889998743 34444444 99999999998665442 3777773
No 48
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=75.98 E-value=2 Score=44.79 Aligned_cols=54 Identities=22% Similarity=0.387 Sum_probs=40.2
Q ss_pred CCCcccccCccCCCCCCCCCCCccCccCccCCCCCCCCc--cccceeeeecccccc
Q 019353 47 KCDKGFHLFCLRPILVSVPKGSWFCPSCSHHKRPKPFPL--VQTKIIDFFRIQRSA 100 (342)
Q Consensus 47 ~C~~~~H~~C~~p~~~~~p~~~w~C~~C~~~~~~~~~~~--~~~~~~~~~~~~~~~ 100 (342)
.|.+.+|..|..|.+...++++|.|+.|.....+..... .....+++++++.+.
T Consensus 1 ~~~r~~~~~~~~p~~~~~~~~~~k~~~~e~~~~~~~~~~~~~~~~~~e~c~ic~~~ 56 (696)
T KOG0383|consen 1 TCPRAYHRVCLDPKLKEEPEMDPKCPGCESSSAQVEAKDDDWDDAEQEACRICADG 56 (696)
T ss_pred CCCcccCcCCCCcccccCCcCCccCcchhhcccccccccCCcchhhhhhhhhhcCC
Confidence 489999999999999998888999999998764432221 123445777777765
No 49
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=72.55 E-value=1.2 Score=45.50 Aligned_cols=50 Identities=32% Similarity=0.808 Sum_probs=38.0
Q ss_pred cccccccccc--CCCCCeeecCCCCcccccCccCCCCCCCC-CCCccCccCcc
Q 019353 27 DSRCEKCGSG--DFPDELLLCDKCDKGFHLFCLRPILVSVP-KGSWFCPSCSH 76 (342)
Q Consensus 27 ~~~C~iC~~~--~~~g~~i~Cd~C~~~~H~~C~~p~~~~~p-~~~w~C~~C~~ 76 (342)
...|.+|+.. +..|.|+-|..|...||..|+...+...- .+-|-|+.|..
T Consensus 18 ~~mc~l~~s~G~~~ag~m~ac~~c~~~yH~~cvt~~~~~~~l~~gWrC~~crv 70 (694)
T KOG4443|consen 18 CLMCPLCGSSGKGRAGRLLACSDCGQKYHPYCVTSWAQHAVLSGGWRCPSCRV 70 (694)
T ss_pred hhhhhhhccccccccCcchhhhhhcccCCcchhhHHHhHHHhcCCcccCCcee
Confidence 4568888875 45688999999999999999996655431 12389988865
No 50
>PF08666 SAF: SAF domain; InterPro: IPR013974 This entry includes a range of different proteins, such as antifreeze proteins, flagellar FlgA proteins, and CpaB pilus proteins. ; PDB: 1C89_A 3NLA_A 3RDN_A 1C8A_A 3FRN_A 1WVO_A 3K3S_H 3G8R_B 1XUU_A 1XUZ_A ....
Probab=72.23 E-value=2.2 Score=29.59 Aligned_cols=15 Identities=40% Similarity=0.618 Sum_probs=11.8
Q ss_pred EEEEcCCCCCCCeEE
Q 019353 312 LLVANRDIAKGERLY 326 (342)
Q Consensus 312 ~l~A~rdI~~GEELt 326 (342)
+++|.|||++|+.|+
T Consensus 3 vvVA~~di~~G~~i~ 17 (63)
T PF08666_consen 3 VVVAARDIPAGTVIT 17 (63)
T ss_dssp EEEESSTB-TT-BEC
T ss_pred EEEEeCccCCCCEEc
Confidence 579999999999997
No 51
>KOG1632 consensus Uncharacterized PHD Zn-finger protein [General function prediction only]
Probab=72.15 E-value=2.1 Score=41.10 Aligned_cols=47 Identities=28% Similarity=0.540 Sum_probs=36.1
Q ss_pred cccccCCC-CCeeecCCCCcccccCc--cCCCCCCCCC-CCccCccCccCC
Q 019353 32 KCGSGDFP-DELLLCDKCDKGFHLFC--LRPILVSVPK-GSWFCPSCSHHK 78 (342)
Q Consensus 32 iC~~~~~~-g~~i~Cd~C~~~~H~~C--~~p~~~~~p~-~~w~C~~C~~~~ 78 (342)
.|....++ +.++.|+.|..|||..| .+++-...|. ..|+|..|....
T Consensus 64 ~~~~~~~p~~~~~~cd~C~~~~~~ec~~v~~~~~e~p~~~~~~c~~c~~~~ 114 (345)
T KOG1632|consen 64 KCYKPCDPDDLMEQCDLCEDWYHGECWEVGTAEKEAPKEDPKVCDECKEAQ 114 (345)
T ss_pred hcccccCchhhhhccccccccccccccccCchhhcCCccccccccccchhh
Confidence 34444443 38999999999999999 8877666544 589999998854
No 52
>KOG1337 consensus N-methyltransferase [General function prediction only]
Probab=71.28 E-value=2.9 Score=41.89 Aligned_cols=38 Identities=32% Similarity=0.576 Sum_probs=28.4
Q ss_pred CCCCCCCCCCCcEEEEEEECC-eEEEEEEEcCCCCCCCeEEEecCCC
Q 019353 287 NHTADGKKKQNLKCVRYNVNG-ECRVLLVANRDIAKGERLYYDYNGY 332 (342)
Q Consensus 287 ~hSC~~~~~pN~~~~~~~~~~-~~~i~l~A~rdI~~GEELt~dY~~~ 332 (342)
||++. + .....+. ...+.+++.++|.+||||++.||-.
T Consensus 241 NH~~~----~----~~~~~~~~d~~~~l~~~~~v~~geevfi~YG~~ 279 (472)
T KOG1337|consen 241 NHSPE----V----IKAGYNQEDEAVELVAERDVSAGEEVFINYGPK 279 (472)
T ss_pred ccCch----h----ccccccCCCCcEEEEEeeeecCCCeEEEecCCC
Confidence 39988 5 2222222 2389999999999999999999863
No 53
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=70.04 E-value=2.3 Score=30.84 Aligned_cols=50 Identities=32% Similarity=0.604 Sum_probs=20.0
Q ss_pred cccccccccCC-CC--CeeecC--CCCcccccCccCCCCCCCC-------CCCccCccCccC
Q 019353 28 SRCEKCGSGDF-PD--ELLLCD--KCDKGFHLFCLRPILVSVP-------KGSWFCPSCSHH 77 (342)
Q Consensus 28 ~~C~iC~~~~~-~g--~~i~Cd--~C~~~~H~~C~~p~~~~~p-------~~~w~C~~C~~~ 77 (342)
..|.||-.... ++ ..+.|+ .|...||..|+.-.+...+ .-.+-|+.|...
T Consensus 3 ~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~ 64 (70)
T PF11793_consen 3 LECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSP 64 (70)
T ss_dssp -S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SE
T ss_pred CCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCe
Confidence 45899987632 33 458898 8999999999964432111 113569999763
No 54
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=67.54 E-value=1.9 Score=25.56 Aligned_cols=28 Identities=32% Similarity=0.712 Sum_probs=12.0
Q ss_pred ccccccccCCCCCeeecCCCCcccccCc
Q 019353 29 RCEKCGSGDFPDELLLCDKCDKGFHLFC 56 (342)
Q Consensus 29 ~C~iC~~~~~~g~~i~Cd~C~~~~H~~C 56 (342)
.|.+|+...+.+..-.|..|+-..|..|
T Consensus 2 ~C~~C~~~~~~~~~Y~C~~Cdf~lH~~C 29 (30)
T PF07649_consen 2 RCDACGKPIDGGWFYRCSECDFDLHEEC 29 (30)
T ss_dssp --TTTS----S--EEE-TTT-----HHH
T ss_pred cCCcCCCcCCCCceEECccCCCccChhc
Confidence 5888998755557888999999999887
No 55
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=66.51 E-value=2.9 Score=31.48 Aligned_cols=30 Identities=27% Similarity=0.757 Sum_probs=25.3
Q ss_pred cccccccccCCCCCeeecCC--CCcccccCccCC
Q 019353 28 SRCEKCGSGDFPDELLLCDK--CDKGFHLFCLRP 59 (342)
Q Consensus 28 ~~C~iC~~~~~~g~~i~Cd~--C~~~~H~~C~~p 59 (342)
..|.+|+.. .|-+|.|.. |...||..|..-
T Consensus 37 ~~C~~C~~~--~Ga~i~C~~~~C~~~fH~~CA~~ 68 (90)
T PF13771_consen 37 LKCSICKKK--GGACIGCSHPGCSRSFHVPCARK 68 (90)
T ss_pred CCCcCCCCC--CCeEEEEeCCCCCcEEChHHHcc
Confidence 569999976 389999975 999999999873
No 56
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=61.97 E-value=2.4 Score=30.93 Aligned_cols=43 Identities=23% Similarity=0.525 Sum_probs=27.4
Q ss_pred ccccccccC-C---------CCCeeecCCCCcccccCccCCCCCCCCCCCccCccCc
Q 019353 29 RCEKCGSGD-F---------PDELLLCDKCDKGFHLFCLRPILVSVPKGSWFCPSCS 75 (342)
Q Consensus 29 ~C~iC~~~~-~---------~g~~i~Cd~C~~~~H~~C~~p~~~~~p~~~w~C~~C~ 75 (342)
.|.||...- + ++-.+.=..|+..||..|+..-+... ..|+.|+
T Consensus 21 ~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~----~~CP~CR 73 (73)
T PF12678_consen 21 NCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQN----NTCPLCR 73 (73)
T ss_dssp BETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTS----SB-TTSS
T ss_pred cccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcC----CcCCCCC
Confidence 399988752 1 12333345699999999998665442 3788774
No 57
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=60.84 E-value=3 Score=38.14 Aligned_cols=53 Identities=26% Similarity=0.455 Sum_probs=33.6
Q ss_pred CcccccccccccccCCCCC-------eeecCCCCcccccCccCCCCCCCCCCCccCccCccC
Q 019353 23 PDDDDSRCEKCGSGDFPDE-------LLLCDKCDKGFHLFCLRPILVSVPKGSWFCPSCSHH 77 (342)
Q Consensus 23 d~~~~~~C~iC~~~~~~g~-------~i~Cd~C~~~~H~~C~~p~~~~~p~~~w~C~~C~~~ 77 (342)
...++.+|.+|++.-+... -+.=-.|+..||-.|....- +--..-.|+.|..+
T Consensus 220 khl~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWc--ivGKkqtCPYCKek 279 (328)
T KOG1734|consen 220 KHLSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWC--IVGKKQTCPYCKEK 279 (328)
T ss_pred CCCCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhhe--eecCCCCCchHHHH
Confidence 4456678999999733222 12223599999999986331 11113589999885
No 58
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=58.32 E-value=2.8 Score=42.70 Aligned_cols=45 Identities=33% Similarity=0.628 Sum_probs=32.8
Q ss_pred ccccccccccC-----CCCCeeecCCCCcccccCccCCCCCCCCCCCccCccCccCC
Q 019353 27 DSRCEKCGSGD-----FPDELLLCDKCDKGFHLFCLRPILVSVPKGSWFCPSCSHHK 78 (342)
Q Consensus 27 ~~~C~iC~~~~-----~~g~~i~Cd~C~~~~H~~C~~p~~~~~p~~~w~C~~C~~~~ 78 (342)
..+|.+|...+ ....+.-|+.|..+||..|+.-. . -.|+.|...+
T Consensus 511 gfiCe~Cq~~~iiyPF~~~~~~rC~~C~avfH~~C~~r~--s-----~~CPrC~R~q 560 (580)
T KOG1829|consen 511 GFICELCQHNDIIYPFETRNTRRCSTCLAVFHKKCLRRK--S-----PCCPRCERRQ 560 (580)
T ss_pred eeeeeeccCCCcccccccccceeHHHHHHHHHHHHHhcc--C-----CCCCchHHHH
Confidence 56788885542 14577889999999999999833 1 2399998753
No 59
>PF07496 zf-CW: CW-type Zinc Finger; InterPro: IPR011124 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a CW-type zinc finger motif, named for its conserved cysteine and tryptophan residues. It is predicted to be a highly specialised mononuclear four-cysteine (C4) zinc finger that plays a role in DNA binding and/or promoting protein-protein interactions in complicated eukaryotic processes including chromatin methylation status and early embryonic development. Weak homology to members of IPR001965 from INTERPRO further evidences these predictions. The domain is found exclusively in vertebrates, vertebrate-infecting parasites and higher plants []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2RR4_A 2E61_A 2L7P_A.
Probab=57.20 E-value=5.7 Score=26.67 Aligned_cols=33 Identities=30% Similarity=0.626 Sum_probs=16.5
Q ss_pred CeeecCCCCcccccC-ccCCCCCCCCCCCccCccC
Q 019353 41 ELLLCDKCDKGFHLF-CLRPILVSVPKGSWFCPSC 74 (342)
Q Consensus 41 ~~i~Cd~C~~~~H~~-C~~p~~~~~p~~~w~C~~C 74 (342)
.-|+||.|.+|=.+. .+.+.....|+ .|+|..=
T Consensus 2 ~WVQCd~C~KWR~lp~~~~~~~~~~~d-~W~C~~n 35 (50)
T PF07496_consen 2 YWVQCDSCLKWRRLPEEVDPIREELPD-PWYCSMN 35 (50)
T ss_dssp EEEE-TTT--EEEE-CCHHCTSCCSST-T--GGGS
T ss_pred eEEECCCCCceeeCChhhCcccccCCC-eEEcCCC
Confidence 358999999998875 22221234555 7999873
No 60
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=54.93 E-value=5.5 Score=31.37 Aligned_cols=53 Identities=23% Similarity=0.582 Sum_probs=33.5
Q ss_pred CcccccccccccccCCCCCeeec------CCC---CcccccCccCCCCC-----CCCCCCccCccCcc
Q 019353 23 PDDDDSRCEKCGSGDFPDELLLC------DKC---DKGFHLFCLRPILV-----SVPKGSWFCPSCSH 76 (342)
Q Consensus 23 d~~~~~~C~iC~~~~~~g~~i~C------d~C---~~~~H~~C~~p~~~-----~~p~~~w~C~~C~~ 76 (342)
|...+..|..|.+...+.. +.| ..| ...|=..||.-.-. .....+|.|+.|.-
T Consensus 3 d~~~g~~CHqCrqKt~~~~-~~C~~~~~~~~C~~~~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crg 69 (105)
T PF10497_consen 3 DSVNGKTCHQCRQKTLDFK-TICTGHWKNSSCRGCRGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRG 69 (105)
T ss_pred cCCCCCCchhhcCCCCCCc-eEcCCCCCCCCCccCcceehHhHHHHHHhhhHHHHhcCCceECCCCCC
Confidence 5567888999998755444 456 566 55555556532221 23456799999966
No 61
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]
Probab=52.53 E-value=2.2 Score=46.21 Aligned_cols=48 Identities=23% Similarity=0.329 Sum_probs=39.1
Q ss_pred cccccccccCCCCCeeecCC-CCccccc-CccCCC--CCCCCCCCccCccCccCC
Q 019353 28 SRCEKCGSGDFPDELLLCDK-CDKGFHL-FCLRPI--LVSVPKGSWFCPSCSHHK 78 (342)
Q Consensus 28 ~~C~iC~~~~~~g~~i~Cd~-C~~~~H~-~C~~p~--~~~~p~~~w~C~~C~~~~ 78 (342)
..|.||+.. +.+++|++ |+..||. .|++-. -..++++-|+|..|..++
T Consensus 429 rrl~Ie~~d---et~l~yysT~pqly~ll~cLd~~~~e~~L~d~i~~~~ee~~rq 480 (1414)
T KOG1473|consen 429 RRLRIEGMD---ETLLWYYSTCPQLYHLLRCLDRTYVEMYLCDGIWERREEIIRQ 480 (1414)
T ss_pred eeeEEecCC---CcEEEEecCcHHHHHHHHHhchHHHHHhhccchhhhHHHHHHh
Confidence 458899966 89999987 9999999 999933 244678889999997764
No 62
>KOG1632 consensus Uncharacterized PHD Zn-finger protein [General function prediction only]
Probab=51.16 E-value=2.6 Score=40.45 Aligned_cols=56 Identities=27% Similarity=0.567 Sum_probs=40.3
Q ss_pred CCcccccccccccccCCC-CCeeecCCCCcccccCccCCCCCCCCCC-C----ccCccCccC
Q 019353 22 SPDDDDSRCEKCGSGDFP-DELLLCDKCDKGFHLFCLRPILVSVPKG-S----WFCPSCSHH 77 (342)
Q Consensus 22 ~d~~~~~~C~iC~~~~~~-g~~i~Cd~C~~~~H~~C~~p~~~~~p~~-~----w~C~~C~~~ 77 (342)
.++.+..+|..||..+.. -++++|+-|-.|||-.|+.+...-.... . +.|++|...
T Consensus 234 ~~~~~~~~~~~cg~~~~~~~~~~~~~~~e~w~~~~~v~~~~a~~~~~~~~~~~~~c~~~~~~ 295 (345)
T KOG1632|consen 234 APDYSKLICDPCGLSDANKKFEICCDLCESWFHGDCVQIFEARKRLNEIRNEVYKCPHCTVL 295 (345)
T ss_pred ccccccccccccCcchHHHHHHHHHHHHHHHhcccccccccchhhhhhhhccceecCceeec
Confidence 355566788889986432 7899999999999999998542221111 3 889999874
No 63
>PF13922 PHD_3: PHD domain of transcriptional enhancer, Asx
Probab=50.27 E-value=3.3 Score=29.37 Aligned_cols=32 Identities=28% Similarity=0.725 Sum_probs=25.3
Q ss_pred cccccCCCCCeeecCCCCcccccCccCCCCCCCCCCCccCccCc
Q 019353 32 KCGSGDFPDELLLCDKCDKGFHLFCLRPILVSVPKGSWFCPSCS 75 (342)
Q Consensus 32 iC~~~~~~g~~i~Cd~C~~~~H~~C~~p~~~~~p~~~w~C~~C~ 75 (342)
.|... -||.|-+|+..-|-.|.+|. -+|..|.
T Consensus 37 ~C~Lk----AMi~Cq~CGAFCHDDCIgps--------kLCvsCl 68 (69)
T PF13922_consen 37 ACSLK----AMIMCQGCGAFCHDDCIGPS--------KLCVSCL 68 (69)
T ss_pred ccchH----HHHHHhhccchhccccccHH--------HHhHhhc
Confidence 56554 79999999999999999975 4666653
No 64
>KOG2084 consensus Predicted histone tail methylase containing SET domain [Chromatin structure and dynamics]
Probab=48.46 E-value=27 Score=34.32 Aligned_cols=40 Identities=25% Similarity=0.358 Sum_probs=27.8
Q ss_pred eccCCCCCCCCCCCCCCcEEEEEEECCeEEEEEEEcCCCCCCC-eEEEecCCC
Q 019353 281 FVNGINNHTADGKKKQNLKCVRYNVNGECRVLLVANRDIAKGE-RLYYDYNGY 332 (342)
Q Consensus 281 fin~~~~hSC~~~~~pN~~~~~~~~~~~~~i~l~A~rdI~~GE-ELt~dY~~~ 332 (342)
++| |||. ||+. +..++...+ +.+..++.+++ ||++.|-..
T Consensus 208 ~~~----hsC~----pn~~---~~~~~~~~~-~~~~~~~~~~~~~l~~~y~~~ 248 (482)
T KOG2084|consen 208 LFN----HSCF----PNIS---VIFDGRGLA-LLVPAGIDAGEEELTISYTDP 248 (482)
T ss_pred hcc----cCCC----CCeE---EEECCceeE-EEeecccCCCCCEEEEeeccc
Confidence 667 9999 9997 335555544 44556666665 999999753
No 65
>PF14445 Prok-RING_2: Prokaryotic RING finger family 2
Probab=47.20 E-value=1.6 Score=29.30 Aligned_cols=43 Identities=26% Similarity=0.518 Sum_probs=33.7
Q ss_pred cccccccccccCCCCCeeecCCCCcccccCccCCCCCCCCCCCccCccCc
Q 019353 26 DDSRCEKCGSGDFPDELLLCDKCDKGFHLFCLRPILVSVPKGSWFCPSCS 75 (342)
Q Consensus 26 ~~~~C~iC~~~~~~g~~i~Cd~C~~~~H~~C~~p~~~~~p~~~w~C~~C~ 75 (342)
+...|..|.....-..+-+|.-|++|--.+|+.- .-+.|..|.
T Consensus 6 sry~CDLCn~~~p~~~LRQCvlCGRWaC~sCW~d-------eYY~CksC~ 48 (57)
T PF14445_consen 6 SRYSCDLCNSSHPISELRQCVLCGRWACNSCWQD-------EYYTCKSCN 48 (57)
T ss_pred hhHhHHhhcccCcHHHHHHHhhhchhhhhhhhhh-------hHhHHHhhh
Confidence 4567899998877778999999999998888872 236677774
No 66
>smart00858 SAF This domain family includes a range of different proteins. Such as antifreeze proteins and flagellar FlgA proteins, and CpaB pilus proteins.
Probab=46.52 E-value=13 Score=25.52 Aligned_cols=15 Identities=40% Similarity=0.674 Sum_probs=13.7
Q ss_pred EEEEcCCCCCCCeEE
Q 019353 312 LLVANRDIAKGERLY 326 (342)
Q Consensus 312 ~l~A~rdI~~GEELt 326 (342)
+++|.++|.+|+.|+
T Consensus 3 v~va~~~i~~G~~i~ 17 (64)
T smart00858 3 VVVAARDLPAGEVIT 17 (64)
T ss_pred EEEEeCccCCCCCcc
Confidence 578999999999998
No 67
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=45.19 E-value=4.1 Score=37.28 Aligned_cols=49 Identities=27% Similarity=0.651 Sum_probs=36.4
Q ss_pred ccccccccc-------CCCCCeeecCCCCcccccCccCCCCCCC---CCCCccCccCcc
Q 019353 28 SRCEKCGSG-------DFPDELLLCDKCDKGFHLFCLRPILVSV---PKGSWFCPSCSH 76 (342)
Q Consensus 28 ~~C~iC~~~-------~~~g~~i~Cd~C~~~~H~~C~~p~~~~~---p~~~w~C~~C~~ 76 (342)
.+|.-|-.. .-++++|.|..|++.=|.+|+......+ ....|.|..|..
T Consensus 225 ~YCDFclgdsr~nkkt~~peelvscsdcgrsghpsclqft~nm~~avk~yrwqcieck~ 283 (336)
T KOG1244|consen 225 PYCDFCLGDSRENKKTGMPEELVSCSDCGRSGHPSCLQFTANMIAAVKTYRWQCIECKY 283 (336)
T ss_pred cccceeccccccccccCCchhhcchhhcCCCCCcchhhhhHHHHHHHHhheeeeeecce
Confidence 457677543 3467999999999999999998654332 334799999876
No 68
>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.
Probab=45.11 E-value=21 Score=21.07 Aligned_cols=28 Identities=21% Similarity=0.604 Sum_probs=21.6
Q ss_pred ccccccccCCCCC-eeecCCCCcccccCcc
Q 019353 29 RCEKCGSGDFPDE-LLLCDKCDKGFHLFCL 57 (342)
Q Consensus 29 ~C~iC~~~~~~g~-~i~Cd~C~~~~H~~C~ 57 (342)
.|.+|+.. -++. .=.|+.|.-..|..|.
T Consensus 2 ~C~~C~~~-~~~~~~Y~C~~c~f~lh~~Ca 30 (30)
T PF03107_consen 2 WCDVCRRK-IDGFYFYHCSECCFTLHVRCA 30 (30)
T ss_pred CCCCCCCC-cCCCEeEEeCCCCCeEcCccC
Confidence 58899876 3455 7789999988898873
No 69
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=44.19 E-value=20 Score=37.40 Aligned_cols=48 Identities=25% Similarity=0.580 Sum_probs=34.2
Q ss_pred cccccccccCCCCCeeecCCCCcccc-cCccCCCCCCCCCCCccCccCccC
Q 019353 28 SRCEKCGSGDFPDELLLCDKCDKGFH-LFCLRPILVSVPKGSWFCPSCSHH 77 (342)
Q Consensus 28 ~~C~iC~~~~~~g~~i~Cd~C~~~~H-~~C~~p~~~~~p~~~w~C~~C~~~ 77 (342)
.+|..|+.. .+....+|..|+.... ..|..-. ...|.+.-||+.|-..
T Consensus 2 ~~Cp~Cg~~-n~~~akFC~~CG~~l~~~~Cp~CG-~~~~~~~~fC~~CG~~ 50 (645)
T PRK14559 2 LICPQCQFE-NPNNNRFCQKCGTSLTHKPCPQCG-TEVPVDEAHCPNCGAE 50 (645)
T ss_pred CcCCCCCCc-CCCCCccccccCCCCCCCcCCCCC-CCCCcccccccccCCc
Confidence 468889876 4566778999987643 5676544 4456677899999664
No 70
>KOG2752 consensus Uncharacterized conserved protein, contains N-recognin-type Zn-finger [General function prediction only]
Probab=43.85 E-value=12 Score=35.07 Aligned_cols=31 Identities=32% Similarity=0.654 Sum_probs=22.9
Q ss_pred ccccccccccCC------CCCeeecCCCCcccc-cCccC
Q 019353 27 DSRCEKCGSGDF------PDELLLCDKCDKGFH-LFCLR 58 (342)
Q Consensus 27 ~~~C~iC~~~~~------~g~~i~Cd~C~~~~H-~~C~~ 58 (342)
+.+| .|....+ .+.|++|..|.-||| -.|+.
T Consensus 128 G~~C-~Cd~~Ypdp~~~~e~~m~QC~iCEDWFHce~c~~ 165 (345)
T KOG2752|consen 128 GLFC-KCDTPYPDPVRTEEGEMLQCVICEDWFHCEGCMQ 165 (345)
T ss_pred ceeE-EecCCCCCccccccceeeeEEeccchhcccccCc
Confidence 3445 6766543 379999999999999 66665
No 71
>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []. The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....
Probab=43.13 E-value=17 Score=24.20 Aligned_cols=15 Identities=40% Similarity=1.254 Sum_probs=8.5
Q ss_pred CCCCCCccCccCccCC
Q 019353 63 SVPKGSWFCPSCSHHK 78 (342)
Q Consensus 63 ~~p~~~w~C~~C~~~~ 78 (342)
..|+ +|.|+.|...+
T Consensus 30 ~Lp~-~w~CP~C~a~K 44 (47)
T PF00301_consen 30 DLPD-DWVCPVCGAPK 44 (47)
T ss_dssp GS-T-T-B-TTTSSBG
T ss_pred HCCC-CCcCcCCCCcc
Confidence 4454 59999998764
No 72
>KOG2155 consensus Tubulin-tyrosine ligase-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=42.86 E-value=15 Score=36.22 Aligned_cols=45 Identities=13% Similarity=0.301 Sum_probs=35.4
Q ss_pred eeeccCCCCCCCCCCCCCCcEEEEEEECC--eEEEEEEEcCCCCCCCeEEEecCC
Q 019353 279 ARFVNGINNHTADGKKKQNLKCVRYNVNG--ECRVLLVANRDIAKGERLYYDYNG 331 (342)
Q Consensus 279 aRfin~~~~hSC~~~~~pN~~~~~~~~~~--~~~i~l~A~rdI~~GEELt~dY~~ 331 (342)
+.-++ ||-. ||..+..+...- -..-+++-+|+...|||+|-||-.
T Consensus 205 Gsrvr----Hsde----Pnf~~aPf~fmPq~vaYsimwp~k~~~tgeE~trDfas 251 (631)
T KOG2155|consen 205 GSRVR----HSDE----PNFRIAPFMFMPQNVAYSIMWPTKPVNTGEEITRDFAS 251 (631)
T ss_pred hhhhc----cCCC----CcceeeeheecchhcceeEEeeccCCCCchHHHHHHhh
Confidence 34467 9999 999998887533 245668899999999999988754
No 73
>COG1773 Rubredoxin [Energy production and conversion]
Probab=41.83 E-value=22 Score=24.49 Aligned_cols=22 Identities=27% Similarity=0.773 Sum_probs=14.4
Q ss_pred ccCCCCCCCCCCCccCccCccCC
Q 019353 56 CLRPILVSVPKGSWFCPSCSHHK 78 (342)
Q Consensus 56 C~~p~~~~~p~~~w~C~~C~~~~ 78 (342)
|-+.+...+|+ +|.|+.|-..+
T Consensus 25 ~pgT~fedlPd-~w~CP~Cg~~K 46 (55)
T COG1773 25 APGTPFEDLPD-DWVCPECGVGK 46 (55)
T ss_pred CCCCchhhCCC-ccCCCCCCCCH
Confidence 33434455665 49999998753
No 74
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.51 E-value=9.3 Score=31.20 Aligned_cols=52 Identities=23% Similarity=0.490 Sum_probs=37.1
Q ss_pred cccccccccccC-CCCCeeecCCCCcccccCccCCCCCCCCCCCccCccCccC
Q 019353 26 DDSRCEKCGSGD-FPDELLLCDKCDKGFHLFCLRPILVSVPKGSWFCPSCSHH 77 (342)
Q Consensus 26 ~~~~C~iC~~~~-~~g~~i~Cd~C~~~~H~~C~~p~~~~~p~~~w~C~~C~~~ 77 (342)
.+.+|.||..+. .||---.|.-|..-+-..|-+-......+-.|.|+.|.++
T Consensus 64 ddatC~IC~KTKFADG~GH~C~YCq~r~CARCGGrv~lrsNKv~wvcnlc~k~ 116 (169)
T KOG3799|consen 64 DDATCGICHKTKFADGCGHNCSYCQTRFCARCGGRVSLRSNKVMWVCNLCRKQ 116 (169)
T ss_pred cCcchhhhhhcccccccCcccchhhhhHHHhcCCeeeeccCceEEeccCCcHH
Confidence 456799999873 5566667888887777778775433333447999999886
No 75
>PF00130 C1_1: Phorbol esters/diacylglycerol binding domain (C1 domain); InterPro: IPR002219 Diacylglycerol (DAG) is an important second messenger. Phorbol esters (PE) are analogues of DAG and potent tumour promoters that cause a variety of physiological changes when administered to both cells and tissues. DAG activates a family of serine/threonine protein kinases, collectively known as protein kinase C (PKC) []. Phorbol esters can directly stimulate PKC. The N-terminal region of PKC, known as C1, has been shown [] to bind PE and DAG in a phospholipid and zinc-dependent fashion. The C1 region contains one or two copies (depending on the isozyme of PKC) of a cysteine-rich domain, which is about 50 amino-acid residues long, and which is essential for DAG/PE-binding. The DAG/PE-binding domain binds two zinc ions; the ligands of these metal ions are probably the six cysteines and two histidines that are conserved in this domain.; GO: 0035556 intracellular signal transduction; PDB: 1RFH_A 2FNF_X 3PFQ_A 1PTQ_A 1PTR_A 2VRW_B 1XA6_A 2ENN_A 1TBN_A 1TBO_A ....
Probab=40.89 E-value=23 Score=23.58 Aligned_cols=33 Identities=24% Similarity=0.476 Sum_probs=25.3
Q ss_pred cccccccccccC--CCCCeeecCCCCcccccCccC
Q 019353 26 DDSRCEKCGSGD--FPDELLLCDKCDKGFHLFCLR 58 (342)
Q Consensus 26 ~~~~C~iC~~~~--~~g~~i~Cd~C~~~~H~~C~~ 58 (342)
....|.+|+..- .......|..|....|..|+.
T Consensus 10 ~~~~C~~C~~~i~g~~~~g~~C~~C~~~~H~~C~~ 44 (53)
T PF00130_consen 10 KPTYCDVCGKFIWGLGKQGYRCSWCGLVCHKKCLS 44 (53)
T ss_dssp STEB-TTSSSBECSSSSCEEEETTTT-EEETTGGC
T ss_pred CCCCCcccCcccCCCCCCeEEECCCCChHhhhhhh
Confidence 346799998863 456788999999999999987
No 76
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=40.60 E-value=15 Score=38.09 Aligned_cols=53 Identities=21% Similarity=0.610 Sum_probs=35.9
Q ss_pred ccccccccccccC-----CCCCeeecC--CCCcccccCccCCC-CC-----CCCCCCccCccCccC
Q 019353 25 DDDSRCEKCGSGD-----FPDELLLCD--KCDKGFHLFCLRPI-LV-----SVPKGSWFCPSCSHH 77 (342)
Q Consensus 25 ~~~~~C~iC~~~~-----~~g~~i~Cd--~C~~~~H~~C~~p~-~~-----~~p~~~w~C~~C~~~ 77 (342)
-=...|.||...+ ..|-...|- .|...||+.|.... |- .+.+..-||-.|...
T Consensus 115 RfnKtCYIC~E~GrpnkA~~GACMtCNKs~CkqaFHVTCAQ~~GLLCEE~gn~~dNVKYCGYCk~H 180 (900)
T KOG0956|consen 115 RFNKTCYICNEEGRPNKAAKGACMTCNKSGCKQAFHVTCAQRAGLLCEEEGNISDNVKYCGYCKYH 180 (900)
T ss_pred hhcceeeeecccCCccccccccceecccccchhhhhhhHhhhhccceeccccccccceechhHHHH
Confidence 3367899999863 235667784 59999999998743 11 122234789999763
No 77
>PHA02929 N1R/p28-like protein; Provisional
Probab=39.28 E-value=13 Score=33.81 Aligned_cols=49 Identities=18% Similarity=0.390 Sum_probs=32.9
Q ss_pred cccccccccccc-CCCC----CeeecCCCCcccccCccCCCCCCCCCCCccCccCccC
Q 019353 25 DDDSRCEKCGSG-DFPD----ELLLCDKCDKGFHLFCLRPILVSVPKGSWFCPSCSHH 77 (342)
Q Consensus 25 ~~~~~C~iC~~~-~~~g----~~i~Cd~C~~~~H~~C~~p~~~~~p~~~w~C~~C~~~ 77 (342)
..+..|.||... .++. ....=..|...||..|+...+... -.||.|+..
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~----~tCPlCR~~ 225 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEK----NTCPVCRTP 225 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcC----CCCCCCCCE
Confidence 346789999885 2221 112234788999999998765542 379999874
No 78
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=38.04 E-value=22 Score=27.27 Aligned_cols=32 Identities=19% Similarity=0.564 Sum_probs=21.6
Q ss_pred cccccccccccCCCCCeeecCCCCcccccCccC
Q 019353 26 DDSRCEKCGSGDFPDELLLCDKCDKGFHLFCLR 58 (342)
Q Consensus 26 ~~~~C~iC~~~~~~g~~i~Cd~C~~~~H~~C~~ 58 (342)
....|.+|++.=..+ ...---|+..+|..|+.
T Consensus 77 ~~~~C~vC~k~l~~~-~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 77 ESTKCSVCGKPLGNS-VFVVFPCGHVVHYSCIK 108 (109)
T ss_pred CCCCccCcCCcCCCc-eEEEeCCCeEEeccccc
Confidence 456699999974333 33333556999999974
No 79
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=37.23 E-value=8 Score=24.04 Aligned_cols=42 Identities=29% Similarity=0.509 Sum_probs=27.3
Q ss_pred cccccccCCCCCeeecCCCCcccccCccCCCCCCCCCCCccCccCcc
Q 019353 30 CEKCGSGDFPDELLLCDKCDKGFHLFCLRPILVSVPKGSWFCPSCSH 76 (342)
Q Consensus 30 C~iC~~~~~~g~~i~Cd~C~~~~H~~C~~p~~~~~p~~~w~C~~C~~ 76 (342)
|.+|...- ...+.-..|+..||..|+...+.. +...|+.|..
T Consensus 2 C~iC~~~~--~~~~~~~~C~H~~c~~C~~~~~~~---~~~~Cp~C~~ 43 (45)
T cd00162 2 CPICLEEF--REPVVLLPCGHVFCRSCIDKWLKS---GKNTCPLCRT 43 (45)
T ss_pred CCcCchhh--hCceEecCCCChhcHHHHHHHHHh---CcCCCCCCCC
Confidence 67777653 234444568889999998754433 3456888864
No 80
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=36.39 E-value=23 Score=21.41 Aligned_cols=11 Identities=36% Similarity=1.310 Sum_probs=8.6
Q ss_pred CCccCccCccC
Q 019353 67 GSWFCPSCSHH 77 (342)
Q Consensus 67 ~~w~C~~C~~~ 77 (342)
..|.|+.|...
T Consensus 16 ~~~~CP~Cg~~ 26 (33)
T cd00350 16 APWVCPVCGAP 26 (33)
T ss_pred CCCcCcCCCCc
Confidence 35999999764
No 81
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=35.79 E-value=7.5 Score=34.30 Aligned_cols=50 Identities=20% Similarity=0.358 Sum_probs=36.8
Q ss_pred ccccccccccccCCCCCeeecCCCCcccccCccCCCCCCCCCCCccCccCccC
Q 019353 25 DDDSRCEKCGSGDFPDELLLCDKCDKGFHLFCLRPILVSVPKGSWFCPSCSHH 77 (342)
Q Consensus 25 ~~~~~C~iC~~~~~~g~~i~Cd~C~~~~H~~C~~p~~~~~p~~~w~C~~C~~~ 77 (342)
++...|-+|..-- =..+.|..|+--+|..|...-++..+-. |.|..|.+.
T Consensus 179 dnlk~Cn~Ch~Lv--Iqg~rCg~c~i~~h~~c~qty~q~~~~c-phc~d~w~h 228 (235)
T KOG4718|consen 179 DNLKNCNLCHCLV--IQGIRCGSCNIQYHRGCIQTYLQRRDIC-PHCGDLWTH 228 (235)
T ss_pred HHHHHHhHhHHHh--heeeccCcccchhhhHHHHHHhcccCcC-CchhcccCc
Confidence 4667788888631 2456799999999999998777764433 777777764
No 82
>PF09416 UPF1_Zn_bind: RNA helicase (UPF2 interacting domain); InterPro: IPR018999 UPF1 (or regulator of nonsense transcripts 1 homologue) is an essential RNA helicase that detects mRNAs containing premature stop codons and triggers their degradation. This domain contains 3 zinc binding motifs and forms interactions with another protein (UPF2) that is also involved nonsense-mediated mRNA decay (NMD) []. ; GO: 0003677 DNA binding, 0004386 helicase activity, 0005524 ATP binding, 0008270 zinc ion binding, 0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay, 0005737 cytoplasm; PDB: 2IYK_B 2WJY_A 2WJV_A 2XZL_A.
Probab=33.50 E-value=23 Score=29.74 Aligned_cols=24 Identities=33% Similarity=0.808 Sum_probs=16.3
Q ss_pred ccccccccCCCCCeeecCCCCcccc
Q 019353 29 RCEKCGSGDFPDELLLCDKCDKGFH 53 (342)
Q Consensus 29 ~C~iC~~~~~~g~~i~Cd~C~~~~H 53 (342)
.|.-||.. ++.-++.|..|.+||-
T Consensus 2 aC~YCG~~-~p~~vv~C~~c~kWFC 25 (152)
T PF09416_consen 2 ACAYCGIH-DPSCVVKCNTCNKWFC 25 (152)
T ss_dssp S-TTT-----CCCEEEETTTTEEEE
T ss_pred CccccCCC-CcccEeEcCCCCcEee
Confidence 47778854 6789999999999983
No 83
>PF05715 zf-piccolo: Piccolo Zn-finger; InterPro: IPR008899 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This (predicted) zinc finger is found in the bassoon and piccolo proteins, both of which are components of the presynaptic cytoskeletal matrix (PCM) assembled at the active zone of neurotransmitter release, where Piccolo plays a role in the trafficking of synaptic vesicles (SVs) [, , ]. The Piccolo zinc fingers were found to interact with the dual prenylated rab3A and VAMP2/Synaptobrevin II receptor PRA1. There are eight conserved cysteines in Piccolo-type zinc fingers, suggesting that they coordinates two zinc ligands. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding, 0045202 synapse
Probab=30.83 E-value=27 Score=24.40 Aligned_cols=12 Identities=25% Similarity=0.980 Sum_probs=9.7
Q ss_pred CCCccCccCccC
Q 019353 66 KGSWFCPSCSHH 77 (342)
Q Consensus 66 ~~~w~C~~C~~~ 77 (342)
..+|+|..|+..
T Consensus 47 ~~eWLCLnCQ~q 58 (61)
T PF05715_consen 47 VKEWLCLNCQMQ 58 (61)
T ss_pred cceeeeecchhh
Confidence 357999999875
No 84
>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain. Putative methyl transferase, based on outlier plant homologues
Probab=30.45 E-value=64 Score=24.40 Aligned_cols=34 Identities=24% Similarity=0.143 Sum_probs=23.3
Q ss_pred hhcCCCCccEEeecCCCc---eeEEEccCCCCCCeEE
Q 019353 202 MNRGEWPPLMVEYDPKEG---FTVQADRFIKDLTIIT 235 (342)
Q Consensus 202 ~~~~~~~~~~v~~~~~~G---~Gv~a~~~i~~g~~I~ 235 (342)
+.....|...+......| ..++|.++|++|+=|.
T Consensus 77 iNHsc~pN~~~~~~~~~~~~~~~~~a~r~I~~GeEi~ 113 (116)
T smart00317 77 INHSCEPNCELLFVEVNGDSRIVIFALRDIKPGEELT 113 (116)
T ss_pred eCCCCCCCEEEEEEEECCCcEEEEEECCCcCCCCEEe
Confidence 334445556655544444 8899999999999764
No 85
>PHA02862 5L protein; Provisional
Probab=30.28 E-value=15 Score=30.53 Aligned_cols=48 Identities=17% Similarity=0.265 Sum_probs=34.1
Q ss_pred cccccccccCCCCC-eeecCCCCcccccCccCCCCCCCCCCCccCccCccC
Q 019353 28 SRCEKCGSGDFPDE-LLLCDKCDKGFHLFCLRPILVSVPKGSWFCPSCSHH 77 (342)
Q Consensus 28 ~~C~iC~~~~~~g~-~i~Cd~C~~~~H~~C~~p~~~~~p~~~w~C~~C~~~ 77 (342)
.+|-||..+++++. -=.|-+-..|.|..|+.-.+.. ...=.|+.|..+
T Consensus 3 diCWIC~~~~~e~~~PC~C~GS~K~VHq~CL~~WIn~--S~k~~CeLCkte 51 (156)
T PHA02862 3 DICWICNDVCDERNNFCGCNEEYKVVHIKCMQLWINY--SKKKECNLCKTK 51 (156)
T ss_pred CEEEEecCcCCCCcccccccCcchhHHHHHHHHHHhc--CCCcCccCCCCe
Confidence 57999998854432 2235567899999999876643 344689999875
No 86
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=29.05 E-value=46 Score=28.47 Aligned_cols=23 Identities=26% Similarity=0.616 Sum_probs=19.0
Q ss_pred CCCeeecCCCCcccccCccCCCC
Q 019353 39 PDELLLCDKCDKGFHLFCLRPIL 61 (342)
Q Consensus 39 ~g~~i~Cd~C~~~~H~~C~~p~~ 61 (342)
+.-|.-|..|.++||+.-+.++.
T Consensus 121 ~nVLFRC~~C~RawH~~HLP~~~ 143 (175)
T PF15446_consen 121 DNVLFRCTSCHRAWHFEHLPPPS 143 (175)
T ss_pred hheEEecCCccceeehhhCCCCc
Confidence 35677899999999999887763
No 87
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=28.67 E-value=12 Score=36.02 Aligned_cols=49 Identities=29% Similarity=0.508 Sum_probs=33.9
Q ss_pred cccccccccc-CCCCCeeecCCCCcccccCccCCCCCCCCCCCccCccCcc
Q 019353 27 DSRCEKCGSG-DFPDELLLCDKCDKGFHLFCLRPILVSVPKGSWFCPSCSH 76 (342)
Q Consensus 27 ~~~C~iC~~~-~~~g~~i~Cd~C~~~~H~~C~~p~~~~~p~~~w~C~~C~~ 76 (342)
...|.||... ..+.++---.+|+..||..|+.-....-|.. --|+.|.-
T Consensus 4 ~A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~-R~cpic~i 53 (465)
T KOG0827|consen 4 MAECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSN-RGCPICQI 53 (465)
T ss_pred cceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCcc-CCCCceee
Confidence 3579999765 3345666667799999999998554444421 26999983
No 88
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=28.39 E-value=7.2 Score=28.66 Aligned_cols=46 Identities=26% Similarity=0.535 Sum_probs=30.2
Q ss_pred cccccccCCCCCeeecCCCCcccccCccCCCCCCCCCCCccCccCccC
Q 019353 30 CEKCGSGDFPDELLLCDKCDKGFHLFCLRPILVSVPKGSWFCPSCSHH 77 (342)
Q Consensus 30 C~iC~~~~~~g~~i~Cd~C~~~~H~~C~~p~~~~~p~~~w~C~~C~~~ 77 (342)
|.-|...+|+-.+++= .|...||..|..-.+. .+...=.|+-|+..
T Consensus 34 Cp~Ck~PgDdCPLv~G-~C~h~fh~hCI~~wl~-~~tsq~~CPmcRq~ 79 (84)
T KOG1493|consen 34 CPDCKLPGDDCPLVWG-YCLHAFHAHCILKWLN-TPTSQGQCPMCRQT 79 (84)
T ss_pred CCCCcCCCCCCccHHH-HHHHHHHHHHHHHHhc-CccccccCCcchhe
Confidence 4445555555555544 7888999999886543 34445688888763
No 89
>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains.; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.
Probab=27.87 E-value=44 Score=19.91 Aligned_cols=24 Identities=21% Similarity=0.495 Sum_probs=13.6
Q ss_pred cccccccccc---CCCCCeeecCCCCc
Q 019353 27 DSRCEKCGSG---DFPDELLLCDKCDK 50 (342)
Q Consensus 27 ~~~C~iC~~~---~~~g~~i~Cd~C~~ 50 (342)
..+|..||.. ...|....|..|+.
T Consensus 3 ~rfC~~CG~~t~~~~~g~~r~C~~Cg~ 29 (32)
T PF09297_consen 3 HRFCGRCGAPTKPAPGGWARRCPSCGH 29 (32)
T ss_dssp TSB-TTT--BEEE-SSSS-EEESSSS-
T ss_pred CcccCcCCccccCCCCcCEeECCCCcC
Confidence 4578899885 35578888888875
No 90
>KOG3612 consensus PHD Zn-finger protein [General function prediction only]
Probab=27.86 E-value=91 Score=31.64 Aligned_cols=48 Identities=23% Similarity=0.314 Sum_probs=36.8
Q ss_pred ccccccccccCCCCCeeecCCCCcccccCccCCCCCCCC-CCCccCccCccC
Q 019353 27 DSRCEKCGSGDFPDELLLCDKCDKGFHLFCLRPILVSVP-KGSWFCPSCSHH 77 (342)
Q Consensus 27 ~~~C~iC~~~~~~g~~i~Cd~C~~~~H~~C~~p~~~~~p-~~~w~C~~C~~~ 77 (342)
...|.-|... |..+.|+-|-+.||..|..|...... ...|.|+.|..-
T Consensus 60 d~~cfechlp---g~vl~c~vc~Rs~h~~c~sp~~q~r~~s~p~~~p~p~s~ 108 (588)
T KOG3612|consen 60 DPFCFECHLP---GAVLKCIVCHRSFHENCQSPDPQKRNYSVPSDKPQPYSF 108 (588)
T ss_pred CcccccccCC---cceeeeehhhccccccccCcchhhccccccccCCccccc
Confidence 4568888877 99999999999999999998743321 125888887664
No 91
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=27.58 E-value=33 Score=27.35 Aligned_cols=51 Identities=20% Similarity=0.501 Sum_probs=33.1
Q ss_pred ccccccccccccc--CCCCCeeecCCCCcccccCccCCCCCCCCCCCccCccCccC
Q 019353 24 DDDDSRCEKCGSG--DFPDELLLCDKCDKGFHLFCLRPILVSVPKGSWFCPSCSHH 77 (342)
Q Consensus 24 ~~~~~~C~iC~~~--~~~g~~i~Cd~C~~~~H~~C~~p~~~~~p~~~w~C~~C~~~ 77 (342)
..+...|.+|+.. -..+.-..|..|....=..|-.- ......|+|..|...
T Consensus 51 ~~~~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~---~~~~~~WlC~vC~k~ 103 (118)
T PF02318_consen 51 KYGERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVY---SKKEPIWLCKVCQKQ 103 (118)
T ss_dssp THCCSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEE---TSSSCCEEEHHHHHH
T ss_pred ccCCcchhhhCCcccccCCCCCcCCcCCccccCccCCc---CCCCCCEEChhhHHH
Confidence 3456689999864 22334477888887777777663 223457999999875
No 92
>PF06937 EURL: EURL protein; InterPro: IPR009704 This family consists of several animal EURL proteins. EURL is preferentially expressed in chick retinal precursor cells as well as in the anterior epithelial cells of the lens at early stages of development. EURL transcripts are found primarily in the peripheral dorsal retina, i.e., the most undifferentiated part of the dorsal retina. EURL transcripts are also detected in the lens at stage 18 and remain abundant in the proliferating epithelial cells of the lens until at least day 11. The distribution pattern of EURL in the developing retina and lens suggest a role before the events leading to cell determination and differentiation [].
Probab=27.51 E-value=31 Score=31.69 Aligned_cols=27 Identities=30% Similarity=0.608 Sum_probs=22.8
Q ss_pred CcccccccccccccCCCCCeeecCCCC
Q 019353 23 PDDDDSRCEKCGSGDFPDELLLCDKCD 49 (342)
Q Consensus 23 d~~~~~~C~iC~~~~~~g~~i~Cd~C~ 49 (342)
|=+++-+|.||..+.|.+.+.+|..|-
T Consensus 11 DLnddniCsVCkl~Td~~tLsfChiCf 37 (285)
T PF06937_consen 11 DLNDDNICSVCKLGTDTETLSFCHICF 37 (285)
T ss_pred ccCCCceeeeeeecccccceeecceee
Confidence 445567899999999999999998884
No 93
>KOG1338 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.91 E-value=41 Score=32.74 Aligned_cols=24 Identities=25% Similarity=0.379 Sum_probs=20.3
Q ss_pred CeEEEEEEEcCCCCCCCeEEEecC
Q 019353 307 GECRVLLVANRDIAKGERLYYDYN 330 (342)
Q Consensus 307 ~~~~i~l~A~rdI~~GEELt~dY~ 330 (342)
+...+-++|.|+|++|+|+.-.|+
T Consensus 236 ~~NcL~mva~r~iekgdev~n~dg 259 (466)
T KOG1338|consen 236 EDNCLEMVADRNIEKGDEVDNSDG 259 (466)
T ss_pred cCcceeeeecCCCCCccccccccc
Confidence 455667899999999999998886
No 94
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=26.45 E-value=52 Score=22.13 Aligned_cols=15 Identities=40% Similarity=1.247 Sum_probs=10.8
Q ss_pred CCCCCCccCccCccCC
Q 019353 63 SVPKGSWFCPSCSHHK 78 (342)
Q Consensus 63 ~~p~~~w~C~~C~~~~ 78 (342)
..|+ +|.|+.|...+
T Consensus 30 ~Lp~-~w~CP~C~a~K 44 (50)
T cd00730 30 DLPD-DWVCPVCGAGK 44 (50)
T ss_pred HCCC-CCCCCCCCCcH
Confidence 3454 69999998753
No 95
>PRK11827 hypothetical protein; Provisional
Probab=26.09 E-value=50 Score=23.18 Aligned_cols=25 Identities=20% Similarity=0.504 Sum_probs=17.1
Q ss_pred ccccccccc---CCCCCeeecCCCCccc
Q 019353 28 SRCEKCGSG---DFPDELLLCDKCDKGF 52 (342)
Q Consensus 28 ~~C~iC~~~---~~~g~~i~Cd~C~~~~ 52 (342)
..|.+|+.. +.+...+.|..|...|
T Consensus 9 LaCP~ckg~L~~~~~~~~Lic~~~~laY 36 (60)
T PRK11827 9 IACPVCNGKLWYNQEKQELICKLDNLAF 36 (60)
T ss_pred eECCCCCCcCeEcCCCCeEECCccCeec
Confidence 468888764 2344566788888877
No 96
>PF12773 DZR: Double zinc ribbon
Probab=26.07 E-value=68 Score=20.99 Aligned_cols=9 Identities=33% Similarity=1.062 Sum_probs=4.8
Q ss_pred CccCccCcc
Q 019353 68 SWFCPSCSH 76 (342)
Q Consensus 68 ~w~C~~C~~ 76 (342)
.++|+.|-.
T Consensus 29 ~~~C~~Cg~ 37 (50)
T PF12773_consen 29 KKICPNCGA 37 (50)
T ss_pred CCCCcCCcC
Confidence 355555544
No 97
>smart00570 AWS associated with SET domains. subdomain of PRESET
Probab=25.14 E-value=24 Score=23.87 Aligned_cols=31 Identities=10% Similarity=0.128 Sum_probs=22.8
Q ss_pred CCcccccchhhccCCceecChHHHHHHHHhhHH-hhcC
Q 019353 169 MAPRSANSAVLEKGGMQVLSKEDIETLNLCKHM-MNRG 205 (342)
Q Consensus 169 ~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 205 (342)
..+.++|++++.++ ...++.+ ..|+|+ +|+.
T Consensus 18 CgsdClNR~l~~EC-~~~C~~G-----~~C~NqrFqk~ 49 (51)
T smart00570 18 CGSDCLNRMLLIEC-SSDCPCG-----SYCSNQRFQKR 49 (51)
T ss_pred cchHHHHHHHhhhc-CCCCCCC-----cCccCcccccC
Confidence 44789999999999 4777766 566655 5554
No 98
>smart00109 C1 Protein kinase C conserved region 1 (C1) domains (Cysteine-rich domains). Some bind phorbol esters and diacylglycerol. Some bind RasGTP. Zinc-binding domains.
Probab=24.70 E-value=31 Score=22.04 Aligned_cols=32 Identities=22% Similarity=0.494 Sum_probs=24.2
Q ss_pred ccccccccccCCCC-CeeecCCCCcccccCccC
Q 019353 27 DSRCEKCGSGDFPD-ELLLCDKCDKGFHLFCLR 58 (342)
Q Consensus 27 ~~~C~iC~~~~~~g-~~i~Cd~C~~~~H~~C~~ 58 (342)
...|.+|+..--.. ..+.|..|....|..|..
T Consensus 11 ~~~C~~C~~~i~~~~~~~~C~~C~~~~H~~C~~ 43 (49)
T smart00109 11 PTKCCVCRKSIWGSFQGLRCSWCKVKCHKKCAE 43 (49)
T ss_pred CCCccccccccCcCCCCcCCCCCCchHHHHHHh
Confidence 45699998763212 367899999999999976
No 99
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.36 E-value=18 Score=32.94 Aligned_cols=53 Identities=23% Similarity=0.403 Sum_probs=37.7
Q ss_pred ccccccccccccCCCCCee------ecCCCCcccccCccCCCCCCCCC----CCccCccCccC
Q 019353 25 DDDSRCEKCGSGDFPDELL------LCDKCDKGFHLFCLRPILVSVPK----GSWFCPSCSHH 77 (342)
Q Consensus 25 ~~~~~C~iC~~~~~~g~~i------~Cd~C~~~~H~~C~~p~~~~~p~----~~w~C~~C~~~ 77 (342)
+.+..|-+|=.++.|...- .|-+-.+|.|.+|+.-...+..- -.-.|+.|+.+
T Consensus 18 e~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTE 80 (293)
T KOG3053|consen 18 ELERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTE 80 (293)
T ss_pred ccceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcch
Confidence 3467789998886555443 57778899999999865544222 24689999886
No 100
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=24.09 E-value=14 Score=21.93 Aligned_cols=28 Identities=21% Similarity=0.381 Sum_probs=17.2
Q ss_pred cccccccCCCCCeeecCCCCcccccCccCCC
Q 019353 30 CEKCGSGDFPDELLLCDKCDKGFHLFCLRPI 60 (342)
Q Consensus 30 C~iC~~~~~~g~~i~Cd~C~~~~H~~C~~p~ 60 (342)
|.+|... .....--.|+..||..|+...
T Consensus 1 C~iC~~~---~~~~~~~~C~H~~c~~C~~~~ 28 (39)
T smart00184 1 CPICLEE---LKDPVVLPCGHTFCRSCIRKW 28 (39)
T ss_pred CCcCccC---CCCcEEecCCChHHHHHHHHH
Confidence 5566655 223333458888888888743
No 101
>COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis]
Probab=23.66 E-value=72 Score=24.86 Aligned_cols=34 Identities=21% Similarity=0.333 Sum_probs=25.7
Q ss_pred cEEEEEEECCeEEEEEEEcCCCCCCCeEEEecCCCCC
Q 019353 298 LKCVRYNVNGECRVLLVANRDIAKGERLYYDYNGYEK 334 (342)
Q Consensus 298 ~~~~~~~~~~~~~i~l~A~rdI~~GEELt~dY~~~~~ 334 (342)
|+--++.+||..- -+.++++.|++|++-|+....
T Consensus 31 ~~~GrV~vNG~~a---KpS~~VK~GD~l~i~~~~~~~ 64 (100)
T COG1188 31 IEGGRVKVNGQRA---KPSKEVKVGDILTIRFGNKEF 64 (100)
T ss_pred HHCCeEEECCEEc---ccccccCCCCEEEEEeCCcEE
Confidence 3445666777653 899999999999999986544
No 102
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=23.58 E-value=18 Score=24.07 Aligned_cols=44 Identities=23% Similarity=0.388 Sum_probs=25.1
Q ss_pred ccccccccCCCC-CeeecCCCC---cccccCccCCCCCCCCCCCccCccC
Q 019353 29 RCEKCGSGDFPD-ELLLCDKCD---KGFHLFCLRPILVSVPKGSWFCPSC 74 (342)
Q Consensus 29 ~C~iC~~~~~~g-~~i~Cd~C~---~~~H~~C~~p~~~~~p~~~w~C~~C 74 (342)
+|.||...++++ .++.=-.|. .++|..|+...+.... ...|+.|
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~--~~~C~iC 48 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESG--NKTCEIC 48 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcC--CCcCCCC
Confidence 477888733333 333212233 7899999986654432 2367766
No 103
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=23.22 E-value=56 Score=30.19 Aligned_cols=58 Identities=24% Similarity=0.551 Sum_probs=32.6
Q ss_pred CCCCCCCCcccccccccccccCCCCCeeecCCCCcccccCccCCCCCCCC-CCCccCccCccCC
Q 019353 16 RPITYESPDDDDSRCEKCGSGDFPDELLLCDKCDKGFHLFCLRPILVSVP-KGSWFCPSCSHHK 78 (342)
Q Consensus 16 ~~~~~~~d~~~~~~C~iC~~~~~~g~~i~Cd~C~~~~H~~C~~p~~~~~p-~~~w~C~~C~~~~ 78 (342)
.|....+.......|.+|+..-.--..+. .|..-|-..|.. .+.. +....|+.|-...
T Consensus 228 ap~~sss~~t~~~~C~~Cg~~PtiP~~~~--~C~HiyCY~Ci~---ts~~~~asf~Cp~Cg~~~ 286 (298)
T KOG2879|consen 228 APKFSSSTGTSDTECPVCGEPPTIPHVIG--KCGHIYCYYCIA---TSRLWDASFTCPLCGENV 286 (298)
T ss_pred CCCcccccccCCceeeccCCCCCCCeeec--cccceeehhhhh---hhhcchhhcccCccCCCC
Confidence 45556666677888999998632223332 133333344444 2221 2247899998754
No 104
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=23.00 E-value=15 Score=38.93 Aligned_cols=50 Identities=26% Similarity=0.617 Sum_probs=36.2
Q ss_pred cccccccccC-CCCCeeecCCCCcccccCccCCCCCCC---CCCCccCccCccC
Q 019353 28 SRCEKCGSGD-FPDELLLCDKCDKGFHLFCLRPILVSV---PKGSWFCPSCSHH 77 (342)
Q Consensus 28 ~~C~iC~~~~-~~g~~i~Cd~C~~~~H~~C~~p~~~~~---p~~~w~C~~C~~~ 77 (342)
..|.||...- ....+-.|..|...||+.|..-.-.+. -...|-|+.|...
T Consensus 192 yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv 245 (950)
T KOG1952|consen 192 YECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSV 245 (950)
T ss_pred eEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccch
Confidence 4599998863 346777899999999999986432221 1135999999864
No 105
>COG3831 Uncharacterized conserved protein [Function unknown]
Probab=22.43 E-value=79 Score=23.85 Aligned_cols=30 Identities=17% Similarity=0.300 Sum_probs=20.7
Q ss_pred eEEEEEEEcCCCCCCCeEEEecC--CCCCCCCCCCC
Q 019353 308 ECRVLLVANRDIAKGERLYYDYN--GYEKEYPTEHF 341 (342)
Q Consensus 308 ~~~i~l~A~rdI~~GEELt~dY~--~~~~~~~~~~~ 341 (342)
+.+++.+++. |-||+++|| +.....-++.|
T Consensus 14 ~~kFy~~~i~----g~~L~~~wGRiG~~Gq~~~k~F 45 (85)
T COG3831 14 MAKFYAVEIE----GAELTRNWGRIGTKGQSQIKSF 45 (85)
T ss_pred ccceEEEEEe----cceeEEeecccccCcceeeeeC
Confidence 4677777776 999999998 34444444444
No 106
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=22.01 E-value=22 Score=33.22 Aligned_cols=60 Identities=27% Similarity=0.444 Sum_probs=40.4
Q ss_pred CCCCCCCCCcccccccccccccCCCCCeeecCCCCcccccCccCCCCCCCCCCCccCccCccC
Q 019353 15 HRPITYESPDDDDSRCEKCGSGDFPDELLLCDKCDKGFHLFCLRPILVSVPKGSWFCPSCSHH 77 (342)
Q Consensus 15 ~~~~~~~~d~~~~~~C~iC~~~~~~g~~i~Cd~C~~~~H~~C~~p~~~~~p~~~w~C~~C~~~ 77 (342)
|....+.++.+.+.-|.||-..---++-+.---|+.-||..|+.-.+.. ....|+.|...
T Consensus 311 pls~e~~~ea~~GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~---y~~~CPvCrt~ 370 (374)
T COG5540 311 PLSIERAVEADKGVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLG---YSNKCPVCRTA 370 (374)
T ss_pred echhHhHHhcCCCceEEEEhhhhcccceEEEeccCceechhHHHHHHhh---hcccCCccCCC
Confidence 4444555677888889999875222333444569999999999855432 23579999764
No 107
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=21.82 E-value=50 Score=31.55 Aligned_cols=19 Identities=53% Similarity=0.606 Sum_probs=16.7
Q ss_pred EEEEEEcCCCCCCCeEEEe
Q 019353 310 RVLLVANRDIAKGERLYYD 328 (342)
Q Consensus 310 ~i~l~A~rdI~~GEELt~d 328 (342)
|-.|||.+||++||.||.+
T Consensus 277 rrsl~a~~di~~G~~lt~~ 295 (329)
T TIGR03569 277 RKSLVAAKDIKKGEIFTED 295 (329)
T ss_pred ceEEEEccCcCCCCEecHH
Confidence 6678999999999999954
No 108
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=21.76 E-value=75 Score=31.72 Aligned_cols=52 Identities=19% Similarity=0.291 Sum_probs=38.7
Q ss_pred ccccccccccccc--CCCCCeeecCCCCcccccCccCCCCCCCCCCCccCccCccC
Q 019353 24 DDDDSRCEKCGSG--DFPDELLLCDKCDKGFHLFCLRPILVSVPKGSWFCPSCSHH 77 (342)
Q Consensus 24 ~~~~~~C~iC~~~--~~~g~~i~Cd~C~~~~H~~C~~p~~~~~p~~~w~C~~C~~~ 77 (342)
+-+...|.+|... .....+..|++|...||..|..|.... .+.|.+..|...
T Consensus 80 ~~~e~~~nv~~s~~~~p~~e~~~~~r~~~~~~q~~~i~~~~~--~~~~~~~~c~~~ 133 (464)
T KOG4323|consen 80 PSSELNPNVLTSETVLPENEKVICGRCKSGYHQGCNIPRFPS--LDIGESTECVFP 133 (464)
T ss_pred CccccCCcccccccccCchhhhhhhhhccCcccccCccCcCc--CCcccccccccc
Confidence 3445668888875 344578889999999999999976443 356888888763
No 109
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=21.64 E-value=36 Score=28.82 Aligned_cols=50 Identities=20% Similarity=0.243 Sum_probs=34.1
Q ss_pred cccccccccccCCCCCeee-cCCCCcccccCccCCCCCCCCCCCccCccCccC
Q 019353 26 DDSRCEKCGSGDFPDELLL-CDKCDKGFHLFCLRPILVSVPKGSWFCPSCSHH 77 (342)
Q Consensus 26 ~~~~C~iC~~~~~~g~~i~-Cd~C~~~~H~~C~~p~~~~~p~~~w~C~~C~~~ 77 (342)
.+..|-||..++++....| |.+--.|.|..|+.-.+... +...|+.|..+
T Consensus 7 ~~~~CRIC~~~~~~~~~PC~CkGs~k~VH~sCL~rWi~~s--~~~~CeiC~~~ 57 (162)
T PHA02825 7 MDKCCWICKDEYDVVTNYCNCKNENKIVHKECLEEWINTS--KNKSCKICNGP 57 (162)
T ss_pred CCCeeEecCCCCCCccCCcccCCCchHHHHHHHHHHHhcC--CCCcccccCCe
Confidence 3567999987754333222 33445799999998776643 56789999885
No 110
>PF05191 ADK_lid: Adenylate kinase, active site lid; InterPro: IPR007862 Adenylate kinases (ADK; 2.7.4.3 from EC) are phosphotransferases that catalyse the Mg-dependent reversible conversion of ATP and AMP to two molecules of ADP, an essential reaction for many processes in living cells. In large variants of adenylate kinase, the AMP and ATP substrates are buried in a domain that undergoes conformational changes from an open to a closed state when bound to substrate; the ligand is then contained within a highly specific environment required for catalysis. Adenylate kinase is a 3-domain protein consisting of a large central CORE domain flanked by a LID domain on one side and the AMP-binding NMPbind domain on the other []. The LID domain binds ATP and covers the phosphates at the active site. The substrates first bind the CORE domain, followed by closure of the active site by the LID and NMPbind domains. Comparisons of adenylate kinases have revealed a particular divergence in the active site lid. In some organisms, particularly the Gram-positive bacteria, residues in the lid domain have been mutated to cysteines and these cysteine residues (two CX(n)C motifs) are responsible for the binding of a zinc ion. The bound zinc ion in the lid domain is clearly structurally homologous to Zinc-finger domains. However, it is unclear whether the adenylate kinase lid is a novel zinc-finger DNA/RNA binding domain, or that the lid bound zinc serves a purely structural function [].; GO: 0004017 adenylate kinase activity; PDB: 3BE4_A 2OSB_B 2ORI_A 2EU8_A 3DL0_A 1P3J_A 2QAJ_A 2OO7_A 2P3S_A 3DKV_A ....
Probab=21.51 E-value=75 Score=19.72 Aligned_cols=27 Identities=30% Similarity=0.704 Sum_probs=18.8
Q ss_pred ecCCCCcccccCccCCCCCCCCCCCccCccCcc
Q 019353 44 LCDKCDKGFHLFCLRPILVSVPKGSWFCPSCSH 76 (342)
Q Consensus 44 ~Cd~C~~~~H~~C~~p~~~~~p~~~w~C~~C~~ 76 (342)
.|..|+..||..=. .|..+..|..|-.
T Consensus 3 ~C~~Cg~~Yh~~~~------pP~~~~~Cd~cg~ 29 (36)
T PF05191_consen 3 ICPKCGRIYHIEFN------PPKVEGVCDNCGG 29 (36)
T ss_dssp EETTTTEEEETTTB--------SSTTBCTTTTE
T ss_pred CcCCCCCccccccC------CCCCCCccCCCCC
Confidence 58999999995433 3445678888866
No 111
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=21.37 E-value=91 Score=32.92 Aligned_cols=64 Identities=22% Similarity=0.548 Sum_probs=38.6
Q ss_pred cccccccccCCCCCeeecCCCCcccccCccCC--CCCCCCCCCccCccCccCCCCCCCCccccceeeeecccccc
Q 019353 28 SRCEKCGSGDFPDELLLCDKCDKGFHLFCLRP--ILVSVPKGSWFCPSCSHHKRPKPFPLVQTKIIDFFRIQRSA 100 (342)
Q Consensus 28 ~~C~iC~~~~~~g~~i~Cd~C~~~~H~~C~~p--~~~~~p~~~w~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (342)
.-|.+|+..-+ ...++|.-|..-| ..|... |+.+ .--|+|+.|..+.-+... ....++.++.+.
T Consensus 1118 vdc~~cg~~i~-~~~~~c~ec~~kf-P~CiasG~pIt~--~~fWlC~~CkH~a~~~EI-----s~y~~CPLCHs~ 1183 (1189)
T KOG2041|consen 1118 VDCSVCGAKID-PYDLQCSECQTKF-PVCIASGRPITD--NIFWLCPRCKHRAHQHEI-----SKYNCCPLCHSM 1183 (1189)
T ss_pred eeeeecCCcCC-ccCCCChhhcCcC-ceeeccCCcccc--ceEEEccccccccccccc-----cccccCccccCh
Confidence 44999998744 4566899998766 567652 2221 125999999986432221 112456666554
No 112
>PF10080 DUF2318: Predicted membrane protein (DUF2318); InterPro: IPR018758 This domain of unknown function is found in hypothetical bacterial membrane proteins with no known function.
Probab=21.34 E-value=43 Score=26.18 Aligned_cols=32 Identities=28% Similarity=0.608 Sum_probs=23.7
Q ss_pred cccccccccc--CCCCCeeecCCCCcccccCccC
Q 019353 27 DSRCEKCGSG--DFPDELLLCDKCDKGFHLFCLR 58 (342)
Q Consensus 27 ~~~C~iC~~~--~~~g~~i~Cd~C~~~~H~~C~~ 58 (342)
-..|.+|+.. .-.|+.+.|-.|+.-++..=++
T Consensus 35 ~daCeiC~~~GY~q~g~~lvC~~C~~~~~~~~ig 68 (102)
T PF10080_consen 35 FDACEICGPKGYYQEGDQLVCKNCGVRFNLPTIG 68 (102)
T ss_pred EEeccccCCCceEEECCEEEEecCCCEEehhhcc
Confidence 4679999764 2457888899999988865443
No 113
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=21.23 E-value=76 Score=35.05 Aligned_cols=52 Identities=21% Similarity=0.513 Sum_probs=39.4
Q ss_pred Cccccccccccccc----CCCCCeeecCCCCcccccCccCCCCCCCCCCCccCccCccC
Q 019353 23 PDDDDSRCEKCGSG----DFPDELLLCDKCDKGFHLFCLRPILVSVPKGSWFCPSCSHH 77 (342)
Q Consensus 23 d~~~~~~C~iC~~~----~~~g~~i~Cd~C~~~~H~~C~~p~~~~~p~~~w~C~~C~~~ 77 (342)
..-+..+|.|||.. .+.+.-+-|.-|.--.-..|+. -+..+|.=.|+.|..+
T Consensus 13 ~~~~~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYE---YEr~eG~q~CPqCktr 68 (1079)
T PLN02638 13 KHGGGQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYE---YERKDGNQSCPQCKTK 68 (1079)
T ss_pred cccCCceeeecccccCcCCCCCEEEEeccCCCccccchhh---hhhhcCCccCCccCCc
Confidence 44567799999985 2334567899998888888986 4456677899999885
No 114
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=21.17 E-value=30 Score=30.27 Aligned_cols=52 Identities=17% Similarity=0.312 Sum_probs=33.1
Q ss_pred CcccccccccccccCCCCCeeecCCCCcccccCccCCCCCC------------CCCCCccCccCccC
Q 019353 23 PDDDDSRCEKCGSGDFPDELLLCDKCDKGFHLFCLRPILVS------------VPKGSWFCPSCSHH 77 (342)
Q Consensus 23 d~~~~~~C~iC~~~~~~g~~i~Cd~C~~~~H~~C~~p~~~~------------~p~~~w~C~~C~~~ 77 (342)
+..+...|.||...-.+.- .-.|+..|+..|+...+.. .......|+.|...
T Consensus 14 ~~~~~~~CpICld~~~dPV---vT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~ 77 (193)
T PLN03208 14 DSGGDFDCNICLDQVRDPV---VTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSD 77 (193)
T ss_pred cCCCccCCccCCCcCCCcE---EcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCc
Confidence 4456678999998633222 2468889999998643211 01234689999885
No 115
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=20.78 E-value=38 Score=33.80 Aligned_cols=31 Identities=23% Similarity=0.662 Sum_probs=25.3
Q ss_pred ccccccccccCCCCCeeecC--CCCcccccCccCC
Q 019353 27 DSRCEKCGSGDFPDELLLCD--KCDKGFHLFCLRP 59 (342)
Q Consensus 27 ~~~C~iC~~~~~~g~~i~Cd--~C~~~~H~~C~~p 59 (342)
...|.+|.... |-.|+|. .|.++||+.|..-
T Consensus 303 kl~C~iCk~~~--GtcIqCs~~nC~~aYHVtCArr 335 (669)
T COG5141 303 KLGCLICKEFG--GTCIQCSYFNCTRAYHVTCARR 335 (669)
T ss_pred hheeeEEcccC--cceeeecccchhhhhhhhhhhh
Confidence 35699999854 8899996 4999999999753
No 116
>PLN02400 cellulose synthase
Probab=20.59 E-value=93 Score=34.42 Aligned_cols=52 Identities=21% Similarity=0.581 Sum_probs=39.7
Q ss_pred Cccccccccccccc----CCCCCeeecCCCCcccccCccCCCCCCCCCCCccCccCccC
Q 019353 23 PDDDDSRCEKCGSG----DFPDELLLCDKCDKGFHLFCLRPILVSVPKGSWFCPSCSHH 77 (342)
Q Consensus 23 d~~~~~~C~iC~~~----~~~g~~i~Cd~C~~~~H~~C~~p~~~~~p~~~w~C~~C~~~ 77 (342)
..-+..+|.|||.. .+.+.-+-|.-|.--.-..|+. -+..+|.=.|+.|..+
T Consensus 32 ~~~~gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYE---YERkeGnq~CPQCkTr 87 (1085)
T PLN02400 32 KNLNGQICQICGDDVGVTETGDVFVACNECAFPVCRPCYE---YERKDGTQCCPQCKTR 87 (1085)
T ss_pred cccCCceeeecccccCcCCCCCEEEEEccCCCccccchhh---eecccCCccCcccCCc
Confidence 44566799999985 2344668899998888888986 4455677899999886
No 117
>cd00029 C1 Protein kinase C conserved region 1 (C1) . Cysteine-rich zinc binding domain. Some members of this domain family bind phorbol esters and diacylglycerol, some are reported to bind RasGTP. May occur in tandem arrangement. Diacylglycerol (DAG) is a second messenger, released by activation of Phospholipase D. Phorbol Esters (PE) can act as analogues of DAG and mimic its downstream effects in, for example, tumor promotion. Protein Kinases C are activated by DAG/PE, this activation is mediated by their N-terminal conserved region (C1). DAG/PE binding may be phospholipid dependent. C1 domains may also mediate DAG/PE signals in chimaerins (a family of Rac GTPase activating proteins), RasGRPs (exchange factors for Ras/Rap1), and Munc13 isoforms (scaffolding proteins involved in exocytosis).
Probab=20.34 E-value=53 Score=21.13 Aligned_cols=32 Identities=22% Similarity=0.484 Sum_probs=24.1
Q ss_pred ccccccccccCCC--CCeeecCCCCcccccCccC
Q 019353 27 DSRCEKCGSGDFP--DELLLCDKCDKGFHLFCLR 58 (342)
Q Consensus 27 ~~~C~iC~~~~~~--g~~i~Cd~C~~~~H~~C~~ 58 (342)
...|.+|+..--. ...+.|..|....|..|..
T Consensus 11 ~~~C~~C~~~i~~~~~~~~~C~~C~~~~H~~C~~ 44 (50)
T cd00029 11 PTFCDVCRKSIWGLFKQGLRCSWCKVKCHKKCAD 44 (50)
T ss_pred CCChhhcchhhhccccceeEcCCCCCchhhhhhc
Confidence 4568899875221 3667899999999999976
Done!