Query 019355
Match_columns 342
No_of_seqs 243 out of 1191
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 08:47:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019355.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019355hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03193 beta-1,3-galactosyltr 100.0 2.6E-84 5.6E-89 634.7 28.4 337 3-342 5-374 (408)
2 KOG2288 Galactosyltransferases 100.0 7.9E-67 1.7E-71 479.3 14.8 230 111-342 8-239 (274)
3 PLN03133 beta-1,3-galactosyltr 100.0 5.6E-49 1.2E-53 405.1 22.4 219 111-339 382-608 (636)
4 PF01762 Galactosyl_T: Galacto 100.0 4.4E-47 9.6E-52 342.5 16.5 191 128-326 1-195 (195)
5 KOG2287 Galactosyltransferases 100.0 1.4E-46 3E-51 368.4 21.1 209 113-330 94-306 (349)
6 PTZ00210 UDP-GlcNAc-dependent 100.0 9.3E-32 2E-36 261.1 15.2 189 111-318 77-306 (382)
7 PF13334 DUF4094: Domain of un 99.8 1.1E-20 2.4E-25 152.5 4.1 77 17-95 1-95 (95)
8 PF02434 Fringe: Fringe-like; 99.8 2.5E-19 5.4E-24 168.7 11.5 195 114-334 6-211 (252)
9 KOG2246 Galactosyltransferases 99.6 2.5E-15 5.4E-20 148.2 12.4 171 110-327 87-270 (364)
10 PLN03153 hypothetical protein; 99.4 2.8E-11 6.1E-16 122.6 17.5 191 111-334 119-321 (537)
11 KOG3708 Uncharacterized conser 97.1 0.0032 7E-08 64.3 9.9 149 115-316 27-182 (681)
12 TIGR03472 HpnI hopanoid biosyn 95.9 0.31 6.7E-06 48.2 15.4 159 152-322 70-242 (373)
13 PF13641 Glyco_tranf_2_3: Glyc 95.8 0.2 4.4E-06 44.8 12.5 114 203-323 77-200 (228)
14 PF01755 Glyco_transf_25: Glyc 95.0 0.48 1E-05 42.3 12.0 94 118-228 4-101 (200)
15 cd02520 Glucosylceramide_synth 94.9 2.4 5.3E-05 37.3 16.3 137 152-324 30-168 (196)
16 PF13506 Glyco_transf_21: Glyc 94.7 0.054 1.2E-06 48.3 5.1 128 195-327 14-148 (175)
17 TIGR03469 HonB hopene-associat 94.7 1.7 3.6E-05 43.3 16.2 157 152-319 70-248 (384)
18 cd02525 Succinoglycan_BP_ExoA 94.3 2.6 5.6E-05 37.7 15.4 161 151-323 30-198 (249)
19 cd04196 GT_2_like_d Subfamily 93.5 1.8 3.9E-05 37.8 12.6 180 131-326 11-198 (214)
20 cd04192 GT_2_like_e Subfamily 92.2 5.3 0.00011 35.2 13.8 126 203-329 73-207 (229)
21 cd02510 pp-GalNAc-T pp-GalNAc- 91.3 8.2 0.00018 36.5 14.8 127 204-330 75-224 (299)
22 cd04185 GT_2_like_b Subfamily 91.3 7.5 0.00016 33.9 13.6 92 200-319 68-160 (202)
23 PRK11204 N-glycosyltransferase 91.2 14 0.0003 36.8 16.9 145 168-323 96-250 (420)
24 cd04186 GT_2_like_c Subfamily 90.9 8.1 0.00018 31.9 14.2 85 208-323 70-155 (166)
25 cd06439 CESA_like_1 CESA_like_ 90.7 5.1 0.00011 36.3 12.2 114 203-322 100-218 (251)
26 cd06532 Glyco_transf_25 Glycos 90.7 3.1 6.8E-05 34.8 10.0 117 119-300 3-119 (128)
27 PF00535 Glycos_transf_2: Glyc 89.7 4.6 9.9E-05 33.1 10.2 92 203-294 69-168 (169)
28 PF13632 Glyco_trans_2_3: Glyc 88.5 1.4 3.1E-05 38.5 6.6 115 215-333 1-126 (193)
29 PRK14583 hmsR N-glycosyltransf 87.9 16 0.00034 37.1 14.6 167 152-332 104-280 (444)
30 cd02526 GT2_RfbF_like RfbF is 87.8 14 0.0003 33.0 12.7 127 201-329 65-202 (237)
31 cd06420 GT2_Chondriotin_Pol_N 87.5 3.6 7.7E-05 35.1 8.3 96 204-319 71-166 (182)
32 cd06434 GT2_HAS Hyaluronan syn 86.8 2.7 5.9E-05 37.6 7.5 156 153-322 29-202 (235)
33 cd06421 CESA_CelA_like CESA_Ce 86.4 23 0.00049 31.3 16.5 123 204-331 76-211 (234)
34 cd06435 CESA_NdvC_like NdvC_li 85.5 13 0.00028 33.2 11.3 114 203-322 73-198 (236)
35 cd04184 GT2_RfbC_Mx_like Myxoc 85.4 23 0.0005 30.6 16.2 116 203-324 74-192 (202)
36 cd06433 GT_2_WfgS_like WfgS an 85.1 6.6 0.00014 33.5 8.8 116 202-322 65-183 (202)
37 cd04187 DPM1_like_bac Bacteria 85.0 5.2 0.00011 34.3 8.1 134 152-296 29-164 (181)
38 cd06423 CESA_like CESA_like is 84.4 5.9 0.00013 32.3 7.9 94 202-295 68-170 (180)
39 PF04646 DUF604: Protein of un 83.7 1.7 3.7E-05 41.3 4.7 54 280-333 12-69 (255)
40 cd06427 CESA_like_2 CESA_like_ 82.7 25 0.00054 31.9 12.0 119 202-323 74-202 (241)
41 cd04195 GT2_AmsE_like GT2_AmsE 82.5 24 0.00053 30.5 11.4 113 204-326 72-196 (201)
42 cd06442 DPM1_like DPM1_like re 81.4 21 0.00045 31.4 10.8 89 205-295 71-167 (224)
43 COG1216 Predicted glycosyltran 81.1 11 0.00024 36.0 9.4 134 180-319 55-206 (305)
44 COG1215 Glycosyltransferases, 80.6 50 0.0011 32.6 14.2 169 153-331 85-263 (439)
45 TIGR03111 glyc2_xrt_Gpos1 puta 79.8 36 0.00079 34.5 13.1 112 202-316 121-249 (439)
46 cd06437 CESA_CaSu_A2 Cellulose 77.7 52 0.0011 29.4 13.5 121 203-329 78-211 (232)
47 PF10111 Glyco_tranf_2_2: Glyc 75.0 73 0.0016 30.0 13.0 167 150-322 32-211 (281)
48 TIGR01556 rhamnosyltran L-rham 73.8 77 0.0017 29.4 13.1 126 203-330 65-200 (281)
49 cd02522 GT_2_like_a GT_2_like_ 72.4 35 0.00076 29.9 9.5 112 204-321 64-175 (221)
50 cd02514 GT13_GLCNAC-TI GT13_GL 71.2 13 0.00029 36.7 7.1 89 197-294 82-174 (334)
51 cd04190 Chitin_synth_C C-termi 69.4 7.2 0.00016 35.9 4.5 107 211-321 72-208 (244)
52 PRK10714 undecaprenyl phosphat 67.3 77 0.0017 30.8 11.4 135 151-296 37-174 (325)
53 TIGR03030 CelA cellulose synth 64.5 1.2E+02 0.0027 32.9 13.4 130 195-328 212-355 (713)
54 cd00761 Glyco_tranf_GTA_type G 64.4 67 0.0015 25.1 11.1 83 203-319 68-151 (156)
55 cd04179 DPM_DPG-synthase_like 63.2 58 0.0013 27.5 8.8 132 153-295 29-167 (185)
56 cd06913 beta3GnTL1_like Beta 1 54.9 1.5E+02 0.0032 26.1 11.0 43 205-247 77-119 (219)
57 cd04188 DPG_synthase DPG_synth 52.0 1.3E+02 0.0027 26.4 9.3 90 151-248 29-119 (211)
58 PRK14716 bacteriophage N4 adso 50.4 3E+02 0.0066 28.8 12.9 108 212-323 158-279 (504)
59 COG4092 Predicted glycosyltran 48.7 63 0.0014 31.4 6.9 162 149-316 35-215 (346)
60 cd04191 Glucan_BSP_ModH Glucan 47.2 2.5E+02 0.0053 26.3 13.7 127 194-327 76-225 (254)
61 PLN02726 dolichyl-phosphate be 46.7 2.2E+02 0.0048 25.7 15.4 157 152-323 40-210 (243)
62 PLN03181 glycosyltransferase; 36.6 1.8E+02 0.004 29.9 8.4 93 130-225 108-211 (453)
63 cd06438 EpsO_like EpsO protein 34.8 2.9E+02 0.0062 23.5 9.6 88 202-293 70-169 (183)
64 PRK05454 glucosyltransferase M 34.8 3.8E+02 0.0082 29.3 11.1 200 111-327 121-350 (691)
65 PHA01631 hypothetical protein 31.4 1.2E+02 0.0027 27.2 5.5 93 178-296 37-132 (176)
66 PRK11498 bcsA cellulose syntha 29.6 1.5E+02 0.0033 33.2 7.2 123 196-323 324-459 (852)
67 PF03742 PetN: PetN ; InterPr 27.0 83 0.0018 20.0 2.6 23 16-38 4-26 (29)
68 PF06306 CgtA: Beta-1,4-N-acet 26.1 1.9E+02 0.0042 28.7 6.4 67 170-236 128-199 (347)
69 PF09258 Glyco_transf_64: Glyc 25.9 73 0.0016 30.0 3.4 37 212-248 75-111 (247)
70 PF06072 Herpes_US9: Alphaherp 23.2 80 0.0017 23.5 2.4 16 21-36 42-57 (60)
71 smart00786 SHR3_chaperone ER m 21.9 94 0.002 28.6 3.2 31 19-49 8-44 (196)
72 PLN03182 xyloglucan 6-xylosylt 21.8 4.5E+02 0.0097 27.1 8.2 93 131-225 106-210 (429)
73 cd06436 GlcNAc-1-P_transferase 21.5 56 0.0012 28.5 1.7 77 213-294 90-178 (191)
74 PF04666 Glyco_transf_54: N-Ac 21.1 3.1E+02 0.0067 26.7 6.8 52 110-164 48-99 (297)
No 1
>PLN03193 beta-1,3-galactosyltransferase; Provisional
Probab=100.00 E-value=2.6e-84 Score=634.72 Aligned_cols=337 Identities=42% Similarity=0.744 Sum_probs=293.0
Q ss_pred CCCCcCcccccccchhhHHHHHHHHHHHHHHHHhcccccchhhhHHHH------HHhhhh-hcCCCcc----c---cccc
Q 019355 3 SRGSSNKLSSMIARTRISSLLLSMFATFASIYVAGRLWQDAQTRVRLI------KELDRI-TGYGKSA----I---SVDD 68 (342)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~------~~~~~~-~~~~~~~----~---~~~~ 68 (342)
+|| .+.++++.+|++|+++||++|||+|++||+|||..||.....+ ++++.. ++|+.+. . ...|
T Consensus 5 ~~~--~~~~~~~~~~~~~~~~~~~~~f~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~ 82 (408)
T PLN03193 5 SRG--EEYSSRSVVSRKWTLLLCLGCFCAGMLFTDRMWTIPESKGISRTTVTEAERLKLVSEGCDPKTLYQKEVKRDSKD 82 (408)
T ss_pred ccc--ccccccccccHHHHHHHHHHHHHHHHhhccccccCCccccccccccchhhhhhhhccccccccccccccccchhH
Confidence 566 6788999999999999999999999999999999998776543 233333 3564432 1 2223
Q ss_pred ch-hhh----HHHHHHHHHHHHhhhhhhhccccc--ccCCCCC----CCCCCCCCCceEEEEEeCCCCCHHHHHHHHHHH
Q 019355 69 TL-KII----ACREQRKKLLELEMQLAAAGQEGF--KSKGSTD----TDDKDPKKRPLVVIGILTRFGRKNNRDAIRKAW 137 (342)
Q Consensus 69 ~~-~~~----~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~----~~~~~~~~~~~llI~V~S~~~~~~rR~aIR~TW 137 (342)
.| +|. ++++|||+|+.||||||+|++.++ ..+.+.. ..+...+++++++|+|+|+|+|++||++||+||
T Consensus 83 ~~~~~~~t~~~~~~~~~~~~~le~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LvIgI~Sap~~~~RR~AIR~TW 162 (408)
T PLN03193 83 IIGEVSKTHNAIQTLDKTISNLEMELAAARAAQESILNGSPISEDLKKTQSSGKRRYLMVVGINTAFSSRKRRDSVRATW 162 (408)
T ss_pred HHHHHhhHHHHHHHHhhhhhHHhHHHHHHHhhhhhhccCCCccccccccCCCCcceEEEEEEEeCCCCCHHHHHHHHHHH
Confidence 34 444 889999999999999999999666 3332222 124466778999999999999999999999999
Q ss_pred hcCcchhhccccCCCeEEEEEeecCCCCCCcchHhhHHhhhhCCCceeeCCCCCCCCCchHHHHHHHHHHHhcCCccEEE
Q 019355 138 MGTGAALKKRENEKGIITRFVIGRSANRGDSLDQDIDSENKQTNDFFILDHHVEAPKEFPNKAKLFFAYAVDKWDAEYYA 217 (342)
Q Consensus 138 ~~~~~~lk~le~~~~i~v~FviG~s~~~~~~~~~~I~~E~~~~~DIl~l~d~~D~y~nLt~Kt~~~~~wa~~~~~a~f~l 217 (342)
|+++..+++++.+.+|.++||||++.++++.++++|++|+++|+|||++ ||+|+|.|||.||+++|+|+.++|+++||+
T Consensus 163 g~~~~~~~kle~~~gv~vrFVIG~s~~~~~~ldr~Le~Ea~~ygDIL~l-DfvDsY~NLT~KTl~~f~wA~~~~dAkF~m 241 (408)
T PLN03193 163 MPQGEKRKKLEEEKGIIIRFVIGHSATSGGILDRAIEAEDRKHGDFLRL-DHVEGYLELSAKTKTYFATAVAMWDADFYV 241 (408)
T ss_pred cCCcccccccccCCcEEEEEEeecCCCcchHHHHHHHHHHHHhCCEEEE-ecccccccchHHHHHHHHHHHHcCCCeEEE
Confidence 9998777778778999999999999875568999999999999999998 699999999999999999999999999999
Q ss_pred EEcCeEEeeHHHHHHHHhhcCCCCceeEEecccCcccccCCCccccCCccccC-CCCccCcCccCCeeeecHHHHHHHHH
Q 019355 218 KVNDDVYVNIDSLGATLATHLDKPRVYIGCMKSGDVFSEPGHKWYEPDWWKFG-DKKLYFRHASGEMYVISRALAKFISI 296 (342)
Q Consensus 218 KvDDDv~Vn~~~L~~~L~~~~~~~~~yiG~~~~g~v~rd~~~kwy~p~~w~~~-~~~~Yp~y~~G~gYilS~dla~~I~~ 296 (342)
|+|||+|||+++|+.+|.+++.++++|+|||+.+|+..+++.+||+|++|+|+ +++.|||||+|++||||+|+|++|+.
T Consensus 242 K~DDDvfVnv~~L~~~L~~~~~~~rlYiG~m~~gPvr~~~~~ky~epe~w~~~~~~~~YPpyAsG~gYVlS~DLa~~I~~ 321 (408)
T PLN03193 242 KVDDDVHVNIATLGETLVRHRKKPRVYIGCMKSGPVLSQKGVRYHEPEYWKFGENGNKYFRHATGQLYAISKDLASYISI 321 (408)
T ss_pred EcCCCceEcHHHHHHHHHhcCCCCCEEEEecccCccccCCCCcCcCcccccccCccccCCCCCCcceEEehHHHHHHHHh
Confidence 99999999999999999988778899999999887665678889999999986 68999999999999999999999999
Q ss_pred hcccCCCCCcChHHHHHHHccCCCeEeeCCCcccCCCC-------CCCcccCC
Q 019355 297 NRSILRTYAHDDVSAGSWFLGLDVKYLNEGKFCCSSWS-------SGAICAGV 342 (342)
Q Consensus 297 ~~~~l~~~~~EDV~lG~~l~~l~V~~i~~~~f~~~~~~-------~~~~c~~~ 342 (342)
++..++.|++|||++|+|+.+|+|+|+|+++|||++|+ ||++|+|+
T Consensus 322 n~~~L~~y~~EDV~vG~Wl~~L~V~~vdd~~fcc~~~~~C~~~~~~~~~c~~~ 374 (408)
T PLN03193 322 NQHVLHKYANEDVSLGSWFIGLDVEHIDDRRLCCGTPPDCEWKAQAGNICVAS 374 (408)
T ss_pred ChhhhcccCcchhhhhhHhccCCceeeecccccCCCCccccccccCCCeeEEE
Confidence 99999999999999999999999999999999999875 59999974
No 2
>KOG2288 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=7.9e-67 Score=479.30 Aligned_cols=230 Identities=52% Similarity=1.002 Sum_probs=221.0
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHHhcCcchhhccccCCCeEEEEEeecCCCCCCcchHhhHHhhhhCCCceeeCCCC
Q 019355 111 KKRPLVVIGILTRFGRKNNRDAIRKAWMGTGAALKKRENEKGIITRFVIGRSANRGDSLDQDIDSENKQTNDFFILDHHV 190 (342)
Q Consensus 111 ~~~~~llI~V~S~~~~~~rR~aIR~TW~~~~~~lk~le~~~~i~v~FviG~s~~~~~~~~~~I~~E~~~~~DIl~l~d~~ 190 (342)
+++++++|+|+|+|++.+||+++|+|||++++.++++|+++||.+|||||+ ++.+++++++|++|+++|+|+++|++|+
T Consensus 8 ~~k~l~vigI~T~f~s~~RR~~vR~TWmp~~~~l~rle~e~gv~~RFvIG~-~~~g~~~~r~ie~E~~~~~DfllLd~h~ 86 (274)
T KOG2288|consen 8 RRKVLLVIGINTAFSSRKRRDSVRQTWMPSGEGLKRLEEEKGVIIRFVIGT-ATLGASLDRALEEENAQHGDFLLLDRHE 86 (274)
T ss_pred ccceEEEEEeecccchhhhHHHHHHhhcCCccchhhhccccceEEEEEecc-CCccHHHHHHHHHHHHhcCCeEeechhH
Confidence 778999999999999999999999999999999999999999999999999 4556899999999999999999997799
Q ss_pred CCCCCchHHHHHHHHHHHhcCCccEEEEEcCeEEeeHHHHHHHHhhcCCCCceeEEecccCcccccCCCccccCCccccC
Q 019355 191 EAPKEFPNKAKLFFAYAVDKWDAEYYAKVNDDVYVNIDSLGATLATHLDKPRVYIGCMKSGDVFSEPGHKWYEPDWWKFG 270 (342)
Q Consensus 191 D~y~nLt~Kt~~~~~wa~~~~~a~f~lKvDDDv~Vn~~~L~~~L~~~~~~~~~yiG~~~~g~v~rd~~~kwy~p~~w~~~ 270 (342)
|+|++||.||+++|.+|.++|+++||+|+|||+|||++.|...|++++.+|++|||||++|+|+.+|++|||||+ |+|+
T Consensus 87 E~Y~~Ls~Kt~~~f~~A~~~~daeFyvKvDDDv~v~l~~L~~~la~~r~~pr~YiGcmksg~v~~~~~~kw~Epe-Wkfg 165 (274)
T KOG2288|consen 87 EAYEELSAKTKAFFSAAVAHWDAEFYVKVDDDVYVRLARLGTLLARERSHPRLYIGCMKSGPVLTQPGGKWYEPE-WKFG 165 (274)
T ss_pred HHHHHHHHHHHHHHHHHHHhccceEEEEccccceecHHHHHHHHHhhccCCceEEEEecCCccccCCCCcccChh-hhcC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999 8999
Q ss_pred CCCccCcCccCCeeeecHHHHHHHHHhcccCCCCCcChHHHHHHHccCCCeEeeCCCcccCCC--CCCCcccCC
Q 019355 271 DKKLYFRHASGEMYVISRALAKFISINRSILRTYAHDDVSAGSWFLGLDVKYLNEGKFCCSSW--SSGAICAGV 342 (342)
Q Consensus 271 ~~~~Yp~y~~G~gYilS~dla~~I~~~~~~l~~~~~EDV~lG~~l~~l~V~~i~~~~f~~~~~--~~~~~c~~~ 342 (342)
+...|+||+.|++|+||++||++|++|+..++.|.+|||++|.||.+|+|+|+||+++||+++ ++|++|++.
T Consensus 166 ~~g~YfrhA~G~~YvlS~dLa~yi~in~~lL~~y~nEDVSlGaW~~gldV~h~dd~rlC~~~~~~~~~~~~~~~ 239 (274)
T KOG2288|consen 166 DNGNYFRHATGGGYVLSKDLATYISINRQLLHKYANEDVSLGAWMIGLDVEHVDDPRLCCSTPKALAGMVCAAS 239 (274)
T ss_pred cccccchhccCceEEeeHHHHHHHHHhHHHHHhhccCCcccceeeeeeeeeEecCCcccccchhhhccceeeee
Confidence 843399999999999999999999999999999999999999999999999999999999999 799999863
No 3
>PLN03133 beta-1,3-galactosyltransferase; Provisional
Probab=100.00 E-value=5.6e-49 Score=405.06 Aligned_cols=219 Identities=25% Similarity=0.428 Sum_probs=194.6
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHHhcCcchhhccccCCCeEEEEEeecCCCCCCcchHhhHHhhhhCCCceeeCCCC
Q 019355 111 KKRPLVVIGILTRFGRKNNRDAIRKAWMGTGAALKKRENEKGIITRFVIGRSANRGDSLDQDIDSENKQTNDFFILDHHV 190 (342)
Q Consensus 111 ~~~~~llI~V~S~~~~~~rR~aIR~TW~~~~~~lk~le~~~~i~v~FviG~s~~~~~~~~~~I~~E~~~~~DIl~l~d~~ 190 (342)
.++++|+|+|+|+|+|++||++||+|||+.... +..++.++|++|.+.+ +.+++.|++|+++|+|||++ ||+
T Consensus 382 ~~~~~LlI~V~Sap~nf~rR~AIR~TWg~~~~~-----~~~~v~~rFvVG~s~n--~~l~~~L~~Ea~~ygDIIq~-dF~ 453 (636)
T PLN03133 382 KKPLDLFIGVFSTANNFKRRMAVRRTWMQYDAV-----RSGAVAVRFFVGLHKN--QMVNEELWNEARTYGDIQLM-PFV 453 (636)
T ss_pred CCceEEEEEEeCCcccHHHHHHHHHhhcccccc-----CCCceEEEEEEecCCc--HHHHHHHHHHHHHcCCeEEE-eee
Confidence 456899999999999999999999999996531 2456899999999875 57889999999999999997 699
Q ss_pred CCCCCchHHHHHHHHHHHhcCCccEEEEEcCeEEeeHHHHHHHHhhcCCCCceeEEeccc-CcccccCCCccccCCcccc
Q 019355 191 EAPKEFPNKAKLFFAYAVDKWDAEYYAKVNDDVYVNIDSLGATLATHLDKPRVYIGCMKS-GDVFSEPGHKWYEPDWWKF 269 (342)
Q Consensus 191 D~y~nLt~Kt~~~~~wa~~~~~a~f~lKvDDDv~Vn~~~L~~~L~~~~~~~~~yiG~~~~-g~v~rd~~~kwy~p~~w~~ 269 (342)
|+|+|||+||++++.|+..|++++|++|+|||+|||+++|+++|......+++|+|++.. .+|+|++.+|||+|. +.
T Consensus 454 DsY~NLTlKtl~~~~wa~~c~~akFilK~DDDvFVnv~~Ll~~L~~~~~~~~Ly~G~v~~~~~PiRd~~sKWYVs~--~e 531 (636)
T PLN03133 454 DYYSLITWKTLAICIFGTEVVSAKYVMKTDDDAFVRVDEVLASLKRTNVSHGLLYGLINSDSQPHRNPDSKWYISP--EE 531 (636)
T ss_pred chhhhhHHHHHHHHHHHHhCCCceEEEEcCCceEEcHHHHHHHHHhcCCCCceEEEEeccCCCcccCCCCCCCCCH--HH
Confidence 999999999999999998899999999999999999999999998776677899999864 579999999999987 36
Q ss_pred CCCCccCcCccCCeeeecHHHHHHHHHhc--ccCCCCCcChHHHHHHHc-----cCCCeEeeCCCcccCCCCCCCcc
Q 019355 270 GDKKLYFRHASGEMYVISRALAKFISINR--SILRTYAHDDVSAGSWFL-----GLDVKYLNEGKFCCSSWSSGAIC 339 (342)
Q Consensus 270 ~~~~~Yp~y~~G~gYilS~dla~~I~~~~--~~l~~~~~EDV~lG~~l~-----~l~V~~i~~~~f~~~~~~~~~~c 339 (342)
|+++.|||||+|++|+||+++|++|+... ..++.|++|||++|+|+. ++.+.+.++.+||+.....+.+|
T Consensus 532 yp~~~YPpYasG~gYVlS~Dla~~L~~~s~s~~l~~f~lEDVyvGi~l~~l~k~gl~v~~~~~~r~~~~~C~~~~i~ 608 (636)
T PLN03133 532 WPEETYPPWAHGPGYVVSRDIAKEVYKRHKEGRLKMFKLEDVAMGIWIAEMKKEGLEVKYENDGRIYNEGCKDGYVV 608 (636)
T ss_pred CCCCCCCCCCCcCEEEEcHHHHHHHHHhhhhcccCcCChhhHhHHHHHHHhcccCCCceeeCCCcccCCcCCCCeEE
Confidence 78899999999999999999999998754 579999999999999985 56688899999998877655444
No 4
>PF01762 Galactosyl_T: Galactosyltransferase; InterPro: IPR002659 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 31 (GH31 from CAZY) comprises enzymes with a number of known activities; N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase (2.4.1.149 from EC); beta-1,3-galactosyltransferase (2.4.1 from EC); fucose-specific beta-1,3-N-acetylglucosaminyltransferase (2.4.1 from EC); globotriosylceramide beta-1,3-GalNAc transferase (2.4.1.79 from EC) [, ].; GO: 0008378 galactosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane
Probab=100.00 E-value=4.4e-47 Score=342.48 Aligned_cols=191 Identities=27% Similarity=0.383 Sum_probs=171.5
Q ss_pred HHHHHHHHHHhcCcchhhccccCCCeEEEEEeecCCCCCCcchHhhHHhhhhCCCceeeCCCCCCCCCchHHHHHHHHHH
Q 019355 128 NNRDAIRKAWMGTGAALKKRENEKGIITRFVIGRSANRGDSLDQDIDSENKQTNDFFILDHHVEAPKEFPNKAKLFFAYA 207 (342)
Q Consensus 128 ~rR~aIR~TW~~~~~~lk~le~~~~i~v~FviG~s~~~~~~~~~~I~~E~~~~~DIl~l~d~~D~y~nLt~Kt~~~~~wa 207 (342)
+||++||+||++.... ...++.++||+|.+++.+..+++.|.+|+++|+|||++ ||.|+|.|||+||+++|+|+
T Consensus 1 ~rR~~IR~TW~~~~~~-----~~~~~~~~FvvG~~~~~~~~~~~~l~~E~~~y~Dil~~-d~~D~y~nlt~K~~~~~~w~ 74 (195)
T PF01762_consen 1 ERRQAIRETWGNQRNF-----KGVRVKVVFVVGESPNSDSDLQEALQEEAEKYGDILQG-DFVDSYRNLTLKTLAGLKWA 74 (195)
T ss_pred ChHHHHHHHHhccccc-----CCCcEEEEEEEecCCCCcHHHHHHhhhhhhhcCceEee-ecccccchhhHHHHHHHHHH
Confidence 5899999999998742 35889999999999854457888899999999999997 79999999999999999999
Q ss_pred Hh-cCCccEEEEEcCeEEeeHHHHHHHHhhc--C-CCCceeEEecccCcccccCCCccccCCccccCCCCccCcCccCCe
Q 019355 208 VD-KWDAEYYAKVNDDVYVNIDSLGATLATH--L-DKPRVYIGCMKSGDVFSEPGHKWYEPDWWKFGDKKLYFRHASGEM 283 (342)
Q Consensus 208 ~~-~~~a~f~lKvDDDv~Vn~~~L~~~L~~~--~-~~~~~yiG~~~~g~v~rd~~~kwy~p~~w~~~~~~~Yp~y~~G~g 283 (342)
.+ |++++|++|+|||+|||+++|.+.|... . ....+|.+++..++|+|++.+|||+|+. .|+.+.||+||+|++
T Consensus 75 ~~~c~~~~~v~k~DDD~~vn~~~l~~~L~~~~~~~~~~~~~g~~~~~~~~~r~~~~kw~v~~~--~y~~~~yP~y~~G~~ 152 (195)
T PF01762_consen 75 SKHCPNAKYVLKVDDDVFVNPDRLVSFLKSLKQDPSKNSIYGGCIKNGPPIRDPSSKWYVSEE--EYPDDYYPPYCSGGG 152 (195)
T ss_pred HhhCCchhheeecCcEEEEehHHhhhhhhhcccCccccccccccccCCccccccccCceeeee--ecccccCCCcCCCCe
Confidence 99 5569999999999999999999999987 2 3344555566777899999999999984 678889999999999
Q ss_pred eeecHHHHHHHHHhcccCCCCCcChHHHHHHHccCCCeEeeCC
Q 019355 284 YVISRALAKFISINRSILRTYAHDDVSAGSWFLGLDVKYLNEG 326 (342)
Q Consensus 284 YilS~dla~~I~~~~~~l~~~~~EDV~lG~~l~~l~V~~i~~~ 326 (342)
|+||+++|+.|+.++..++.+++|||++|+|+.++||+++|++
T Consensus 153 yvls~~~v~~i~~~~~~~~~~~~eDv~iGi~~~~~~i~~~~~~ 195 (195)
T PF01762_consen 153 YVLSSDVVKRIYKASSHTPFFPLEDVFIGILAEKLGIKPIHDP 195 (195)
T ss_pred EEecHHHHHHHHHHhhcCCCCCchHHHHHHHHHHCCCCccCCC
Confidence 9999999999999999999999999999999999999999975
No 5
>KOG2287 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.4e-46 Score=368.43 Aligned_cols=209 Identities=23% Similarity=0.314 Sum_probs=192.7
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHHhcCcchhhccccCCCeEEEEEeecCCCCCCcchHhhHHhhhhCCCceeeCCCCCC
Q 019355 113 RPLVVIGILTRFGRKNNRDAIRKAWMGTGAALKKRENEKGIITRFVIGRSANRGDSLDQDIDSENKQTNDFFILDHHVEA 192 (342)
Q Consensus 113 ~~~llI~V~S~~~~~~rR~aIR~TW~~~~~~lk~le~~~~i~v~FviG~s~~~~~~~~~~I~~E~~~~~DIl~l~d~~D~ 192 (342)
.++++++|.|++++++||++||+|||++... .+..++++|++|.+.+.+ .+++.+.+|++.|||||+. ||.|+
T Consensus 94 ~~~lLl~V~S~~~~farR~aiR~TW~~~~~v-----~~~~v~~~FLvG~~~~~~-~~~~~l~~Ea~~ygDIi~~-df~Dt 166 (349)
T KOG2287|consen 94 PPELLLLVKSAPDNFARRNAIRKTWGNENNV-----RGGRVRVLFLVGLPSNED-KLNKLLADEARLYGDIIQV-DFEDT 166 (349)
T ss_pred CceEEEEEecCCCCHHHHHHHHHHhcCcccc-----CCCcEEEEEEecCCCcHH-HHHHHHHHHHHHhCCEEEE-ecccc
Confidence 4899999999999999999999999998742 366799999999998753 5689999999999999997 79999
Q ss_pred CCCchHHHHHHHHHHHh-cCCccEEEEEcCeEEeeHHHHHHHHhhc-CCCCceeEEecc-cCcccccCCCccccCCcccc
Q 019355 193 PKEFPNKAKLFFAYAVD-KWDAEYYAKVNDDVYVNIDSLGATLATH-LDKPRVYIGCMK-SGDVFSEPGHKWYEPDWWKF 269 (342)
Q Consensus 193 y~nLt~Kt~~~~~wa~~-~~~a~f~lKvDDDv~Vn~~~L~~~L~~~-~~~~~~yiG~~~-~g~v~rd~~~kwy~p~~w~~ 269 (342)
|.|||+||++++.|+.+ |++++|++|+|||+|||+++|.++|..+ .+.+.+|+|.+. ..+|+|++.+|||+|+ .+
T Consensus 167 y~nltlKtl~~l~w~~~~cp~akfi~K~DDDvfv~~~~L~~~L~~~~~~~~~~~~G~v~~~~~p~R~~~~KwyVp~--~~ 244 (349)
T KOG2287|consen 167 YFNLTLKTLAILLWGVSKCPDAKFILKIDDDVFVNPDNLLEYLDKLNDPSSDLYYGRVIQNAPPIRDKTSKWYVPE--SE 244 (349)
T ss_pred hhchHHHHHHHHHHHHhcCCcceEEEeccCceEEcHHHHHHHHhccCCCCcceEEEeecccCCCCCCCCCCCccCH--HH
Confidence 99999999999999999 8899999999999999999999999999 788899999975 4589999999999998 57
Q ss_pred CCCCccCcCccCCeeeecHHHHHHHHHhcccCCCCCcChHHHHHHHccC-CCeEeeCCCccc
Q 019355 270 GDKKLYFRHASGEMYVISRALAKFISINRSILRTYAHDDVSAGSWFLGL-DVKYLNEGKFCC 330 (342)
Q Consensus 270 ~~~~~Yp~y~~G~gYilS~dla~~I~~~~~~l~~~~~EDV~lG~~l~~l-~V~~i~~~~f~~ 330 (342)
|++..||+||+|+||++|+++|+.|++++.+++.++.|||++|+|+... ||.+++..++..
T Consensus 245 y~~~~YP~Y~sG~gYvis~~~a~~l~~~s~~~~~~~iEDV~~g~~l~~~~gi~~~~~~~~~~ 306 (349)
T KOG2287|consen 245 YPCSVYPPYASGPGYVISGDAARRLLKASKHLKFFPIEDVFVGGCLAEDLGIKPVNHPGFFE 306 (349)
T ss_pred CCCCCCCCcCCCceeEecHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcCCCcccCccccc
Confidence 8999999999999999999999999999999999999999999999987 999999887433
No 6
>PTZ00210 UDP-GlcNAc-dependent glycosyltransferase; Provisional
Probab=99.97 E-value=9.3e-32 Score=261.07 Aligned_cols=189 Identities=19% Similarity=0.292 Sum_probs=156.4
Q ss_pred CCCceEEEEEeCCCCC--HHHHHHHHHHHhcCcchhhcccc-CCCeEEEEEeecCCCCCCcchHhhHHhhhhCCCceeeC
Q 019355 111 KKRPLVVIGILTRFGR--KNNRDAIRKAWMGTGAALKKREN-EKGIITRFVIGRSANRGDSLDQDIDSENKQTNDFFILD 187 (342)
Q Consensus 111 ~~~~~llI~V~S~~~~--~~rR~aIR~TW~~~~~~lk~le~-~~~i~v~FviG~s~~~~~~~~~~I~~E~~~~~DIl~l~ 187 (342)
++..++++||.|..++ +.||++.|+||++......+-++ ...+.++|++|+.++.+...++++.+|+++|+|||++
T Consensus 77 ~~~~lv~~Gi~S~d~~~r~~rR~lqr~t~w~y~~va~~~n~ftg~~lv~y~l~~H~~~~~~~~~~L~eEA~~~~DIVil- 155 (382)
T PTZ00210 77 AQRFLAVLGIPSVDNSERSRRRDLQRQTCWKYSGVATRSNNFSGSLLPLYLLAPHQSNSYLISHSLKEEAARTHDIITL- 155 (382)
T ss_pred cCCceEEEeccCCCchHHHHHHHHHHhhhhcchhhhhhccCCchhhhhhhhhccCCccchhhhHHHHHHHHHhCCEEEE-
Confidence 5679999999999998 88999999999998753222222 2456789999999997779999999999999999998
Q ss_pred CC------------------CCCCCCchHHHHHHHHHHHh-cCCccEEEEEcCeEEeeHHHHHHHHhhcCCCCceeEEec
Q 019355 188 HH------------------VEAPKEFPNKAKLFFAYAVD-KWDAEYYAKVNDDVYVNIDSLGATLATHLDKPRVYIGCM 248 (342)
Q Consensus 188 d~------------------~D~y~nLt~Kt~~~~~wa~~-~~~a~f~lKvDDDv~Vn~~~L~~~L~~~~~~~~~yiG~~ 248 (342)
+| .|++.++|+||+++|+|+.. |++++|++|+|||+|||++++++.|... +...+|+|.+
T Consensus 156 pf~d~~~tTnKkiG~~g~WG~e~e~~mT~KT~l~~~wA~~~cP~a~YImKgDDDvFVrVp~lL~~Lr~~-prr~LY~G~v 234 (382)
T PTZ00210 156 PTNDVSPSTRKKIGENGNWGIEAEVAMSRKTYLWLRFALHMFPNVSYIVKGDDDIFIRVPKYLADLRVM-PRHGLYMGRY 234 (382)
T ss_pred ecccCccccccccccCCcccchhhcchhHHHHHHHHHHHHhCCCCCeEEEcCCCeEeeHHHHHHHHhhC-CCCceEEEee
Confidence 59 66778899999999999999 6799999999999999999999999654 5667999986
Q ss_pred ccC-cccccCCCccccCCccccCCCCccCcCccCCeeeecHHHHHHHHHhccc--C---------------CCCCcChHH
Q 019355 249 KSG-DVFSEPGHKWYEPDWWKFGDKKLYFRHASGEMYVISRALAKFISINRSI--L---------------RTYAHDDVS 310 (342)
Q Consensus 249 ~~g-~v~rd~~~kwy~p~~w~~~~~~~Yp~y~~G~gYilS~dla~~I~~~~~~--l---------------~~~~~EDV~ 310 (342)
... .|.| +.+||||+|++|+||+|+|+.|+...+. + -.+.+||++
T Consensus 235 ~~~~~p~R-----------------d~~PpY~~G~gYvLSrDVA~~Lvs~~pl~rL~~~pys~~~~~~y~~~~~~~EDiM 297 (382)
T PTZ00210 235 NYYNRIWR-----------------RNQLTYVNGYCITLSRDTAQAIISYKPLERLVNMPFSMWDYFDFLDLGMFYEDVM 297 (382)
T ss_pred CCCCcccc-----------------CCCCCccccceeeccHHHHHHHHhhChHhHhhcCCCchHHHHHHHHhhcCchHHH
Confidence 532 2322 2369999999999999999999876432 2 235799999
Q ss_pred HHHHHc-cC
Q 019355 311 AGSWFL-GL 318 (342)
Q Consensus 311 lG~~l~-~l 318 (342)
+|.|+. ++
T Consensus 298 vG~vLr~~~ 306 (382)
T PTZ00210 298 VGMILREKV 306 (382)
T ss_pred HHHHHHHhc
Confidence 999994 44
No 7
>PF13334 DUF4094: Domain of unknown function (DUF4094)
Probab=99.81 E-value=1.1e-20 Score=152.49 Aligned_cols=77 Identities=25% Similarity=0.305 Sum_probs=57.3
Q ss_pred hhhHHHHHHHHHHHHHHHHhcccccchhhhHHHH-------HHhhhh-hcCCCcc----------cccccchhhhHHHHH
Q 019355 17 TRISSLLLSMFATFASIYVAGRLWQDAQTRVRLI-------KELDRI-TGYGKSA----------ISVDDTLKIIACREQ 78 (342)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~-------~~~~~~-~~~~~~~----------~~~~~~~~~~~~~~~ 78 (342)
|++|+++||++|||+|+|||||||..||..+... +++... .+|+++. .+|.+|+++ +++|
T Consensus 1 S~kw~l~Lc~~SF~~G~lft~R~W~~pe~~~~~~~~~~~~~~~l~l~s~~c~~k~~~~~~~~di~~eV~kTh~a--Iq~L 78 (95)
T PF13334_consen 1 SRKWVLLLCIASFCAGMLFTNRMWTVPESKEISRRSSQDAEERLQLVSEDCDPKKLKESDQRDIMGEVSKTHEA--IQSL 78 (95)
T ss_pred CchHHHHHHHHHHHHHHHHhcccccCCccccchhhhccccccccccccccccccccccCCccchhHHHHHHHHH--HHHH
Confidence 6899999999999999999999998887655432 122222 3443332 255666654 5799
Q ss_pred HHHHHHHhhhhhhhccc
Q 019355 79 RKKLLELEMQLAAAGQE 95 (342)
Q Consensus 79 ~~~~~~~~~~l~~~~~~ 95 (342)
||+|++||||||+||++
T Consensus 79 dKtIS~LEMELAaARa~ 95 (95)
T PF13334_consen 79 DKTISSLEMELAAARAE 95 (95)
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 99999999999999963
No 8
>PF02434 Fringe: Fringe-like; InterPro: IPR003378 The Notch receptor is a large, cell surface transmembrane protein involved in a wide variety of developmental processes in higher organisms []. It becomes activated when its extracellular region binds to ligands located on adjacent cells. Much of this extracellular region is composed of EGF-like repeats, many of which can be O-fucosylated. A number of these O-fucosylated repeats can in turn be further modified by the action of a beta-1,3-N-acetylglucosaminyltransferase enzyme known as Fringe []. Fringe potentiates the activation of Notch by Delta ligands, while inhibiting activation by Serrate/Jagged ligands. This regulation of Notch signalling by Fringe is important in many processes []. Four distinct Fringe proteins have so far been studied in detail; Drosophila Fringe (Dfng) and its three mammalian homologues Lunatic Fringe (Lfng), Radical Fringe (Rfng) and Manic Fringe (Mfng). Dfng, Lfng and Rfng have all been shown to play important roles in developmental processes within their host, though the phenotype of mutants can vary between species e.g. Rfng mutants are retarded in wing development in chickens, but have no obvious phenotype in mice [, , ]. Mfng mutants have not, so far, been charcterised. Biochemical studies indicate that the Fringe proteins are fucose-specific transferases requiring manganese for activity and utilising UDP-N-acetylglucosamine as a donor substrate []. The three mammalian proteins show distinct variations in their catalytic efficiencies with different substrates. Dfng is a glucosaminyltransferase that controls the response of the Notch receptor to specific ligands which is localised to the Golgi apparatus [] (not secreted as previously thought). Modification of Notch occurs through glycosylation by Dfng. This entry consists of Fringe proteins and related glycosyltransferase enzymes including: Beta-1,3-glucosyltransferase, which glucosylates O-linked fucosylglycan on thrombospondin type 1 repeat domains []. Core 1 beta1,3-galactosyltransferase 1, generates the core T antigen, which is a precursor for many extended O-glycans in glycoproteins and plays a central role in many processes, such as angiogenesis, thrombopoiesis and kidney homeostasis development []. ; GO: 0016757 transferase activity, transferring glycosyl groups, 0016020 membrane; PDB: 2J0B_A 2J0A_A.
Probab=99.80 E-value=2.5e-19 Score=168.72 Aligned_cols=195 Identities=22% Similarity=0.277 Sum_probs=101.0
Q ss_pred ceEEEEEeCCCCCH-HHHHHHHHHHhcCcchhhccccCCCeEEEEEeecCCCCCCcchHhhHHhhhhCCCceeeCCCCCC
Q 019355 114 PLVVIGILTRFGRK-NNRDAIRKAWMGTGAALKKRENEKGIITRFVIGRSANRGDSLDQDIDSENKQTNDFFILDHHVEA 192 (342)
Q Consensus 114 ~~llI~V~S~~~~~-~rR~aIR~TW~~~~~~lk~le~~~~i~v~FviG~s~~~~~~~~~~I~~E~~~~~DIl~l~d~~D~ 192 (342)
-.|+|+|+|++++. .|-.+|++||++.+.. ..|+....+ +..+..+ .+.-+..++...+
T Consensus 6 ~dI~i~V~T~~k~h~tR~~~I~~TW~~~~~~-----------~~~ifsd~~------d~~l~~~---~~~~l~~~~~~~~ 65 (252)
T PF02434_consen 6 DDIFIAVKTTKKFHKTRAPAIKQTWAKRCNK-----------QTFIFSDAE------DPSLPTV---TGVHLVNPNCDAG 65 (252)
T ss_dssp GGEEEEEE--GGGTTTTHHHHHHTGGGGSGG-----------GEEEEESS--------HHHHHH---HGGGEEE------
T ss_pred ccEEEEEEeCHHHHHHHHHHHHHHHHhhcCC-----------ceEEecCcc------ccccccc---cccccccCCCcch
Confidence 47899999999865 5779999999999853 134332221 2334433 1222334555554
Q ss_pred CCCchHHHHHHHHHHHh-cCCccEEEEEcCeEEeeHHHHHHHHhhcCCCCceeEEecccCcccccCCCccccCCccccCC
Q 019355 193 PKEFPNKAKLFFAYAVD-KWDAEYYAKVNDDVYVNIDSLGATLATHLDKPRVYIGCMKSGDVFSEPGHKWYEPDWWKFGD 271 (342)
Q Consensus 193 y~nLt~Kt~~~~~wa~~-~~~a~f~lKvDDDv~Vn~~~L~~~L~~~~~~~~~yiG~~~~g~v~rd~~~kwy~p~~w~~~~ 271 (342)
+...+++.++.+.+-.. ..+++|++++|||+||++++|..+|...++..++|+|+.....+.... .+ +.+. ..
T Consensus 66 ~~~~~~~~~~~~~y~~~~~~~~~Wf~~~DDDtyv~~~~L~~~L~~~~~~~~~yiG~~~~~~~~~~~-~~-~~~~----~~ 139 (252)
T PF02434_consen 66 HCRKTLSCKMAYEYDHFLNSDKDWFCFADDDTYVNVENLRRLLSKYDPSEPIYIGRPSGDRPIEII-HR-FNPN----KS 139 (252)
T ss_dssp -------HHHHHHHHHHHHHT-SEEEEEETTEEE-HHHHHHHHTTS-TTS--EEE-EE----------------------
T ss_pred hhHHHHHHHHHHHHHhhhcCCceEEEEEeCCceecHHHHHHHHhhCCCccCEEeeeeccCccceee-cc-cccc----cc
Confidence 44444444444344222 357899999999999999999999999999999999996533222110 00 0000 01
Q ss_pred CCccCcCc-cCCeeeecHHHHHHHHH---hcccCCCC----CcChHHHHHHHcc-CCCeEeeCCCcccCCCC
Q 019355 272 KKLYFRHA-SGEMYVISRALAKFISI---NRSILRTY----AHDDVSAGSWFLG-LDVKYLNEGKFCCSSWS 334 (342)
Q Consensus 272 ~~~Yp~y~-~G~gYilS~dla~~I~~---~~~~l~~~----~~EDV~lG~~l~~-l~V~~i~~~~f~~~~~~ 334 (342)
...-..|+ +|+||+||+.+++.|.. ........ ..||+.+|.|+.. |||+.+|.+.||.+.+.
T Consensus 140 ~~~~~~f~~GGaG~vlSr~~~~k~~~~~~~~~~~~~~~~~~~~dD~~lG~ci~~~lgv~lt~s~~fhs~~~~ 211 (252)
T PF02434_consen 140 KDSGFWFATGGAGYVLSRALLKKMSPWASGCKCPSTDEKIRLPDDMTLGYCIENLLGVPLTHSPLFHSHLEN 211 (252)
T ss_dssp ------EE-GGG-EEEEHHHHHHHHHHHTT-TTS--TTTTTS-HHHHHHHHHHHTT---EEE-TT---SSS-
T ss_pred CcCceEeeCCCeeHHHhHHHHHHHhhhcccccccCCcCCCCCcccChhhhhHHhcCCcceeechhhcccCcc
Confidence 11223455 56899999999999953 22222222 3899999999998 99999999999999875
No 9
>KOG2246 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=99.62 E-value=2.5e-15 Score=148.22 Aligned_cols=171 Identities=20% Similarity=0.305 Sum_probs=130.9
Q ss_pred CCCCceEEEEEeCCCCCHH-HHHHHHHHHhcCcchhhccccCCCeEEEEEe---ecCCCCCCcchHhhHHhhhhCCCcee
Q 019355 110 PKKRPLVVIGILTRFGRKN-NRDAIRKAWMGTGAALKKRENEKGIITRFVI---GRSANRGDSLDQDIDSENKQTNDFFI 185 (342)
Q Consensus 110 ~~~~~~llI~V~S~~~~~~-rR~aIR~TW~~~~~~lk~le~~~~i~v~Fvi---G~s~~~~~~~~~~I~~E~~~~~DIl~ 185 (342)
..++..|++.|.|++.+.. |-+.+-+||++.++. ..|+- .... ..+.-+ .
T Consensus 87 l~r~~~v~cwv~t~~~~~~~~~~~v~~TW~~rc~~-----------~~f~s~~~s~~~--------------~~f~~v-~ 140 (364)
T KOG2246|consen 87 LSRSGRVLCWVLTSPMRHVTRADAVKETWLKRCDK-----------GIFFSPTLSKDD--------------SRFPTV-Y 140 (364)
T ss_pred cCCCceEEEEEEecCcCceeehhhhhcccccccCc-----------ceecCccCCCCC--------------CcCcee-e
Confidence 3567899999999997755 667999999999863 23443 2221 223333 3
Q ss_pred eCCCCCCCCCchHHHHHHHHHHHhc--CCccEEEEEcCeEEeeHHHHHHHHhhcCCCCceeEEecccCcccccCCCcccc
Q 019355 186 LDHHVEAPKEFPNKAKLFFAYAVDK--WDAEYYAKVNDDVYVNIDSLGATLATHLDKPRVYIGCMKSGDVFSEPGHKWYE 263 (342)
Q Consensus 186 l~d~~D~y~nLt~Kt~~~~~wa~~~--~~a~f~lKvDDDv~Vn~~~L~~~L~~~~~~~~~yiG~~~~g~v~rd~~~kwy~ 263 (342)
+ +..|+|+++..||...|+++.++ .+++|++|+|||||+.++||..+|..+++..++|+|+.... |
T Consensus 141 ~-~~~~g~~~~~~ktr~~~~yv~~~~~~~~dWf~~aDDDTy~i~eNLr~~L~~yDp~~p~YiG~~~~~----------~- 208 (364)
T KOG2246|consen 141 Y-NLPDGYRSLWRKTRIAFKYVYDHILKDYDWFLKADDDTYFIMENLRYVLSKYDPEKPVYLGYRSKS----------Y- 208 (364)
T ss_pred c-cCCcchHHHHHHHHHHHHHHHHhccCCCCeEEeccCCeEEeHHHHHHHHhhcCCCCcEEecccccc----------c-
Confidence 4 58899999999999999999863 58999999999999999999999999999999999985310 1
Q ss_pred CCccccCCCCccCcCccCCeeeecHHHHHHHHHh----c-ccCCCCC--cChHHHHHHHccCCCeEeeCCC
Q 019355 264 PDWWKFGDKKLYFRHASGEMYVISRALAKFISIN----R-SILRTYA--HDDVSAGSWFLGLDVKYLNEGK 327 (342)
Q Consensus 264 p~~w~~~~~~~Yp~y~~G~gYilS~dla~~I~~~----~-~~l~~~~--~EDV~lG~~l~~l~V~~i~~~~ 327 (342)
-.+.|. .+|++|++|+++.+.+++. . .+...+. .||+-+|.|+..+||...|.+.
T Consensus 209 -------~~~~y~--~g~ag~~ls~aa~~~la~~l~~~~~~C~~~~~~~~eD~~i~~Cl~~~GV~~~d~~d 270 (364)
T KOG2246|consen 209 -------FQNGYS--SGGAGYVLSFAALRRLAERLLNNEDKCPQRYPSYGEDRRIGRCLAEVGVPATDERD 270 (364)
T ss_pred -------cccccc--cCCCCcceeHHHHHHHHHHHhcchhhcccccCCchhHHHHHHHHHHhCCCccCchh
Confidence 112222 3678999999998876642 2 2444454 8999999999999999998743
No 10
>PLN03153 hypothetical protein; Provisional
Probab=99.35 E-value=2.8e-11 Score=122.60 Aligned_cols=191 Identities=19% Similarity=0.198 Sum_probs=119.4
Q ss_pred CCCceEEEEEeCCCCCH-HHHHHHHHHHhcCcchhhccccCCCeEEEEEeecCCCCCCcchHhhHHhhhhCCCceeeCCC
Q 019355 111 KKRPLVVIGILTRFGRK-NNRDAIRKAWMGTGAALKKRENEKGIITRFVIGRSANRGDSLDQDIDSENKQTNDFFILDHH 189 (342)
Q Consensus 111 ~~~~~llI~V~S~~~~~-~rR~aIR~TW~~~~~~lk~le~~~~i~v~FviG~s~~~~~~~~~~I~~E~~~~~DIl~l~d~ 189 (342)
..--.|+++|.++.+.. +|+..|+.+|.+..- .| ++|+.....+. ..+..+-. ...-.|.=.++
T Consensus 119 t~~~hIvF~I~~s~~~w~~R~~yik~wW~p~~~--------rg--~v~ld~~~~~~--~~~~~~P~-i~is~d~s~f~-- 183 (537)
T PLN03153 119 LSLNHIMFGIAGSSQLWKRRKELVRLWWRPNQM--------RG--HVWLEEQVSPE--EGDDSLPP-IMVSEDTSRFR-- 183 (537)
T ss_pred CccccEEEEEEEchhhhhhhhhhhhhhcCcccc--------ee--EEEecccCCCC--CCcCCCCC-EEeCCCccccc--
Confidence 33457899999998875 577999999998541 11 33444332210 01111110 00000100000
Q ss_pred CCCCCCchHHHHH--HHHHHHh--cCCccEEEEEcCeEEeeHHHHHHHHhhcCCCCceeEEecccCcccccCCCccccCC
Q 019355 190 VEAPKEFPNKAKL--FFAYAVD--KWDAEYYAKVNDDVYVNIDSLGATLATHLDKPRVYIGCMKSGDVFSEPGHKWYEPD 265 (342)
Q Consensus 190 ~D~y~nLt~Kt~~--~~~wa~~--~~~a~f~lKvDDDv~Vn~~~L~~~L~~~~~~~~~yiG~~~~g~v~rd~~~kwy~p~ 265 (342)
-+...+....... +...+.. .++++||+++|||+|+.+++|..+|..+++....|+|......
T Consensus 184 y~~~~Gh~sa~rI~rmv~et~~~~~pd~kWfVf~DDDTyf~~~NLv~~Ls~YDptkp~YIGs~Se~~------------- 250 (537)
T PLN03153 184 YTNPTGHPSGLRISRIVLESFRLGLPDVRWFVLGDDDTIFNADNLVAVLSKYDPSEMVYVGGPSESH------------- 250 (537)
T ss_pred ccCCCCcHHHHHHHHHHHHHHHhhCCCCCEEEEecCCccccHHHHHHHHhhcCCCCCEEeccccccc-------------
Confidence 0112222332111 2333333 5799999999999999999999999999999999999753110
Q ss_pred ccccCCCCccC--cCc-cCCeeeecHHHHHHHHHhc-ccCCCC---CcChHHHHHHHccCCCeEeeCCCcccCCCC
Q 019355 266 WWKFGDKKLYF--RHA-SGEMYVISRALAKFISINR-SILRTY---AHDDVSAGSWFLGLDVKYLNEGKFCCSSWS 334 (342)
Q Consensus 266 ~w~~~~~~~Yp--~y~-~G~gYilS~dla~~I~~~~-~~l~~~---~~EDV~lG~~l~~l~V~~i~~~~f~~~~~~ 334 (342)
+.+.++ -|+ +|+||+||+.+++.|.... .+...| ..+|.-+|.|+..+||...++++|++....
T Consensus 251 -----~qn~~f~~~fA~GGAG~~LSrPLae~L~~~~d~C~~rY~~~~~gD~rL~~CL~elGV~LT~~~gfhQ~D~~ 321 (537)
T PLN03153 251 -----SANSYFSHNMAFGGGGIAISYPLAEALSRILDDCLDRYPKLYGSDDRLHACITELGVPLSREPGFHQWDIR 321 (537)
T ss_pred -----ccccccccccccCCceEEEcHHHHHHHHHHhhhhhhhcccCCCcHHHHHHHHHHcCCCceecCCccccccC
Confidence 001111 233 7899999999999988642 233322 468889999999999999999999998753
No 11
>KOG3708 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.08 E-value=0.0032 Score=64.34 Aligned_cols=149 Identities=16% Similarity=0.137 Sum_probs=97.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHhcCcchhhccccCCCeEEEEEeecCCCCCCcchHhhHHhhhhCCCceeeCCCCCCCC
Q 019355 115 LVVIGILTRFGRKNNRDAIRKAWMGTGAALKKRENEKGIITRFVIGRSANRGDSLDQDIDSENKQTNDFFILDHHVEAPK 194 (342)
Q Consensus 115 ~llI~V~S~~~~~~rR~aIR~TW~~~~~~lk~le~~~~i~v~FviG~s~~~~~~~~~~I~~E~~~~~DIl~l~d~~D~y~ 194 (342)
+++++|+|. ..---+|-.|=+..-. ++.|+++.+.-. +|.-++ +.+.-|.
T Consensus 27 rl~~aVmte---~tlA~a~NrT~ahhvp-----------rv~~F~~~~~i~---------------~~~a~~-~~vs~~d 76 (681)
T KOG3708|consen 27 RLMAAVMTE---STLALAINRTLAHHVP-----------RVHLFADSSRID---------------NDLAQL-TNVSPYD 76 (681)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHhhcc-----------eeEEeecccccc---------------ccHhhc-cccCccc
Confidence 456677772 2445566666665543 356777765431 122222 2334444
Q ss_pred CchHHHH-HHHHHHHhc--CCccEEEEEcCeEEeeHHHHHHHHhhcCCCCceeEEecccCcccccCCCccccCCccccCC
Q 019355 195 EFPNKAK-LFFAYAVDK--WDAEYYAKVNDDVYVNIDSLGATLATHLDKPRVYIGCMKSGDVFSEPGHKWYEPDWWKFGD 271 (342)
Q Consensus 195 nLt~Kt~-~~~~wa~~~--~~a~f~lKvDDDv~Vn~~~L~~~L~~~~~~~~~yiG~~~~g~v~rd~~~kwy~p~~w~~~~ 271 (342)
.-..|+. +.+.++.++ -++||++-+-|++|||...|++++....-..++|+|.-- .-++
T Consensus 77 ~r~~~~~s~vl~~l~~~~~~~YDwFll~~D~tYv~a~~L~~l~~hmsin~dlymGEe~------------------~~gs 138 (681)
T KOG3708|consen 77 LRGQKTHSMVLGLLFNMVHNNYDWFLLAKDSTYVNAFVLLRLIDHMSINEDLYMGEEA------------------EDGS 138 (681)
T ss_pred cCccccHHHHHHHHHHhhccccceEEEecCcceecHHHHHHHHhhcccccccccchhh------------------hCcc
Confidence 4455554 345666663 489999999999999999999999988778889998211 0111
Q ss_pred CCccCcCcc-CCeeeecHHHHHHHHHhcc-cCC--CCCcChHHHHHHHc
Q 019355 272 KKLYFRHAS-GEMYVISRALAKFISINRS-ILR--TYAHDDVSAGSWFL 316 (342)
Q Consensus 272 ~~~Yp~y~~-G~gYilS~dla~~I~~~~~-~l~--~~~~EDV~lG~~l~ 316 (342)
+ + |. |.||++|+.++..+-.|-. +.. .-.-.|+.+|.|+.
T Consensus 139 ~----r-C~l~~G~LLS~s~l~~lrnnle~C~~~~lsad~d~~lgrCi~ 182 (681)
T KOG3708|consen 139 G----R-CRLDTGMLLSQSLLHALRNNLEGCRNDILSADPDEWLGRCIQ 182 (681)
T ss_pred C----c-cccccceeecHHHHHHHHhhHHHhhcccccCCcHHHHHHHHH
Confidence 1 1 75 5799999999999987633 222 23577899999996
No 12
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=95.88 E-value=0.31 Score=48.24 Aligned_cols=159 Identities=16% Similarity=0.132 Sum_probs=85.6
Q ss_pred CeEEEEEeecCCCCCCcchHhhHHhhhhCCC--ceeeCCCCCCCCCchHHHHHHHHHHHhcCCccEEEEEcCeEEeeHHH
Q 019355 152 GIITRFVIGRSANRGDSLDQDIDSENKQTND--FFILDHHVEAPKEFPNKAKLFFAYAVDKWDAEYYAKVNDDVYVNIDS 229 (342)
Q Consensus 152 ~i~v~FviG~s~~~~~~~~~~I~~E~~~~~D--Il~l~d~~D~y~nLt~Kt~~~~~wa~~~~~a~f~lKvDDDv~Vn~~~ 229 (342)
.++++++...+++ .....+++=.++|.+ +..+.+ ..-.....|.-...+ +.+..+.+|++..|+|+.+.++.
T Consensus 70 ~~EIivvdd~s~D---~t~~iv~~~~~~~p~~~i~~v~~--~~~~G~~~K~~~l~~-~~~~a~ge~i~~~DaD~~~~p~~ 143 (373)
T TIGR03472 70 GFQMLFGVQDPDD---PALAVVRRLRADFPDADIDLVID--ARRHGPNRKVSNLIN-MLPHARHDILVIADSDISVGPDY 143 (373)
T ss_pred CeEEEEEeCCCCC---cHHHHHHHHHHhCCCCceEEEEC--CCCCCCChHHHHHHH-HHHhccCCEEEEECCCCCcChhH
Confidence 3677777665543 222223322345665 322211 111233456655544 34556799999999999999999
Q ss_pred HHHHHhhcCCCCce-eEEecccCcccccCCCcccc----C-CccccCCC------CccCcCccCCeeeecHHHHHHHHHh
Q 019355 230 LGATLATHLDKPRV-YIGCMKSGDVFSEPGHKWYE----P-DWWKFGDK------KLYFRHASGEMYVISRALAKFISIN 297 (342)
Q Consensus 230 L~~~L~~~~~~~~~-yiG~~~~g~v~rd~~~kwy~----p-~~w~~~~~------~~Yp~y~~G~gYilS~dla~~I~~~ 297 (342)
|..++.... .+++ .+++...+. +...|.. . ..+.+++. ..-+.+|.|+.+++.+++.+.+---
T Consensus 144 L~~lv~~~~-~~~v~~V~~~~~~~----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~a~RR~~l~~iGGf 218 (373)
T TIGR03472 144 LRQVVAPLA-DPDVGLVTCLYRGR----PVPGFWSRLGAMGINHNFLPSVMVARALGRARFCFGATMALRRATLEAIGGL 218 (373)
T ss_pred HHHHHHHhc-CCCcceEeccccCC----CCCCHHHHHHHHHhhhhhhHHHHHHHhccCCccccChhhheeHHHHHHcCCh
Confidence 988877653 2322 223321111 1111110 0 00011110 0123458899999999999887532
Q ss_pred cccCCCCCcChHHHHHHHccCCCeE
Q 019355 298 RSILRTYAHDDVSAGSWFLGLDVKY 322 (342)
Q Consensus 298 ~~~l~~~~~EDV~lG~~l~~l~V~~ 322 (342)
.. +...-.||+.+|.-+...|.+.
T Consensus 219 ~~-~~~~~~ED~~l~~~i~~~G~~v 242 (373)
T TIGR03472 219 AA-LAHHLADDYWLGELVRALGLRV 242 (373)
T ss_pred HH-hcccchHHHHHHHHHHHcCCeE
Confidence 22 1223369999999887776444
No 13
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=95.79 E-value=0.2 Score=44.84 Aligned_cols=114 Identities=13% Similarity=0.076 Sum_probs=58.7
Q ss_pred HHHHHHhcCCccEEEEEcCeEEeeHHHHHHHHhhc-CCCCceeEEeccc--Cc-cccc----CCCccccCCccccCC-CC
Q 019355 203 FFAYAVDKWDAEYYAKVNDDVYVNIDSLGATLATH-LDKPRVYIGCMKS--GD-VFSE----PGHKWYEPDWWKFGD-KK 273 (342)
Q Consensus 203 ~~~wa~~~~~a~f~lKvDDDv~Vn~~~L~~~L~~~-~~~~~~yiG~~~~--g~-v~rd----~~~kwy~p~~w~~~~-~~ 273 (342)
.++++.+..+.+|++.+|||+.+.++.|..++... .+.-....|.+.. +. .+.. ....|+.. +.. ..
T Consensus 77 a~n~~~~~~~~d~i~~lD~D~~~~p~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 152 (228)
T PF13641_consen 77 ALNEALAAARGDYILFLDDDTVLDPDWLERLLAAFADPGVGAVGGPVFPDNDRNWLTRLQDLFFARWHLR----FRSGRR 152 (228)
T ss_dssp HHHHHHHH---SEEEEE-SSEEE-CHHHHHHHHHHHBSS--EEEEEEEETTCCCEEEE-TT--S-EETTT----S-TT-B
T ss_pred HHHHHHHhcCCCEEEEECCCcEECHHHHHHHHHHHHhCCCCeEeeeEeecCCCCHHHHHHHHHHhhhhhh----hhhhhc
Confidence 45666666679999999999999999988888776 3333333333321 11 1000 00011111 111 11
Q ss_pred cc-CcCccCCeeeecHHHHHHHHHhcccCCCCCcChHHHHHHHccCCCeEe
Q 019355 274 LY-FRHASGEMYVISRALAKFISINRSILRTYAHDDVSAGSWFLGLDVKYL 323 (342)
Q Consensus 274 ~Y-p~y~~G~gYilS~dla~~I~~~~~~l~~~~~EDV~lG~~l~~l~V~~i 323 (342)
.+ ..++.|++.++.++++..+---.. ....||..++.-+...|.+.+
T Consensus 153 ~~~~~~~~G~~~~~rr~~~~~~g~fd~---~~~~eD~~l~~r~~~~G~~~~ 200 (228)
T PF13641_consen 153 ALGVAFLSGSGMLFRRSALEEVGGFDP---FILGEDFDLCLRLRAAGWRIV 200 (228)
T ss_dssp ----S-B--TEEEEEHHHHHHH-S--S---SSSSHHHHHHHHHHHTT--EE
T ss_pred ccceeeccCcEEEEEHHHHHHhCCCCC---CCcccHHHHHHHHHHCCCcEE
Confidence 11 134679999999999998853222 344699999988877765543
No 14
>PF01755 Glyco_transf_25: Glycosyltransferase family 25 (LPS biosynthesis protein); InterPro: IPR002654 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 25 GT25 from CAZY comprises enzymes with only one known activity; as a lipopolysaccharide biosynthesis protein. These enzymes catalyse the transfer of various sugars onto the growing lipopolysaccharide chain during its biosynthesis [].; GO: 0009103 lipopolysaccharide biosynthetic process
Probab=94.96 E-value=0.48 Score=42.28 Aligned_cols=94 Identities=17% Similarity=0.135 Sum_probs=52.7
Q ss_pred EEEeCCCCCHHHHHHHHHHHhcCcchhhccccCCCeEEEEEeecCCCCCCcchHhhHHhhhhCCCceeeC----CCCCCC
Q 019355 118 IGILTRFGRKNNRDAIRKAWMGTGAALKKRENEKGIITRFVIGRSANRGDSLDQDIDSENKQTNDFFILD----HHVEAP 193 (342)
Q Consensus 118 I~V~S~~~~~~rR~aIR~TW~~~~~~lk~le~~~~i~v~FviG~s~~~~~~~~~~I~~E~~~~~DIl~l~----d~~D~y 193 (342)
|.|.|-+.+.+||+.+.+..... ++.+.|+-+-.... ++. .+....++.-.... ...-+-
T Consensus 4 i~vInL~~~~~Rr~~~~~~~~~~-----------~~~~e~~~Avdg~~---l~~--~~~~~~~~~~~~~~~~~~~lt~gE 67 (200)
T PF01755_consen 4 IYVINLDRSTERRERIQQQLAKL-----------GINFEFFDAVDGRD---LSE--DELFRRYDPELFKKRYGRPLTPGE 67 (200)
T ss_pred EEEEECCCCHHHHHHHHHHHHHc-----------CCceEEEEeecccc---cch--HHHHHHhhhhhhhccccccCCcce
Confidence 34566788899999998776654 34566776654431 111 11111222111100 001111
Q ss_pred CCchHHHHHHHHHHHhcCCccEEEEEcCeEEeeHH
Q 019355 194 KEFPNKAKLFFAYAVDKWDAEYYAKVNDDVYVNID 228 (342)
Q Consensus 194 ~nLt~Kt~~~~~wa~~~~~a~f~lKvDDDv~Vn~~ 228 (342)
-.=.+-.+..++-+++ .+.+|.+-.-||+.++.+
T Consensus 68 iGC~lSH~~~w~~~v~-~~~~~~lIlEDDv~~~~~ 101 (200)
T PF01755_consen 68 IGCALSHIKAWQRIVD-SGLEYALILEDDVIFDPD 101 (200)
T ss_pred EeehhhHHHHHHHHHH-cCCCeEEEEecccccccc
Confidence 1115556777777776 357999999999999865
No 15
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=94.88 E-value=2.4 Score=37.28 Aligned_cols=137 Identities=15% Similarity=0.105 Sum_probs=80.3
Q ss_pred CeEEEEEeecCCCCCCcchHhhHHhhhhCC--CceeeCCCCCCCCCchHHHHHHHHHHHhcCCccEEEEEcCeEEeeHHH
Q 019355 152 GIITRFVIGRSANRGDSLDQDIDSENKQTN--DFFILDHHVEAPKEFPNKAKLFFAYAVDKWDAEYYAKVNDDVYVNIDS 229 (342)
Q Consensus 152 ~i~v~FviG~s~~~~~~~~~~I~~E~~~~~--DIl~l~d~~D~y~nLt~Kt~~~~~wa~~~~~a~f~lKvDDDv~Vn~~~ 229 (342)
.+.+++|...+.+ .....+++-.+.+. ++.++..... .....|.-. +..+.+....+|++..|+|+.+.++.
T Consensus 30 ~~eiivVdd~s~d---~t~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~~-~n~g~~~a~~d~i~~~D~D~~~~~~~ 103 (196)
T cd02520 30 KYEILFCVQDEDD---PAIPVVRKLIAKYPNVDARLLIGGEK--VGINPKVNN-LIKGYEEARYDILVISDSDISVPPDY 103 (196)
T ss_pred CeEEEEEeCCCcc---hHHHHHHHHHHHCCCCcEEEEecCCc--CCCCHhHHH-HHHHHHhCCCCEEEEECCCceEChhH
Confidence 3677777766653 22334444444554 3322211111 122345433 35555666799999999999999888
Q ss_pred HHHHHhhcCCCCceeEEecccCcccccCCCccccCCccccCCCCccCcCccCCeeeecHHHHHHHHHhcccCCCCCcChH
Q 019355 230 LGATLATHLDKPRVYIGCMKSGDVFSEPGHKWYEPDWWKFGDKKLYFRHASGEMYVISRALAKFISINRSILRTYAHDDV 309 (342)
Q Consensus 230 L~~~L~~~~~~~~~yiG~~~~g~v~rd~~~kwy~p~~w~~~~~~~Yp~y~~G~gYilS~dla~~I~~~~~~l~~~~~EDV 309 (342)
|..++.... .+.+ |.+.+ .++.|++.++.+++.+.+.--. ....+..||.
T Consensus 104 l~~l~~~~~-~~~~--~~v~~--------------------------~~~~g~~~~~r~~~~~~~ggf~-~~~~~~~eD~ 153 (196)
T cd02520 104 LRRMVAPLM-DPGV--GLVTC--------------------------LCAFGKSMALRREVLDAIGGFE-AFADYLAEDY 153 (196)
T ss_pred HHHHHHHhh-CCCC--CeEEe--------------------------ecccCceeeeEHHHHHhccChH-HHhHHHHHHH
Confidence 887776532 2211 21110 0467899999999998774321 1222347999
Q ss_pred HHHHHHccCCCeEee
Q 019355 310 SAGSWFLGLDVKYLN 324 (342)
Q Consensus 310 ~lG~~l~~l~V~~i~ 324 (342)
.++.-+...|.+...
T Consensus 154 ~l~~rl~~~G~~i~~ 168 (196)
T cd02520 154 FLGKLIWRLGYRVVL 168 (196)
T ss_pred HHHHHHHHcCCeEEE
Confidence 999888766654443
No 16
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=94.70 E-value=0.054 Score=48.27 Aligned_cols=128 Identities=16% Similarity=0.084 Sum_probs=80.0
Q ss_pred CchHHHHHHHHHHHhcCCccEEEEEcCeEEeeHHHHHHHHhhcCC-CCceeEEecccCcccccCCCcc--ccCCccccCC
Q 019355 195 EFPNKAKLFFAYAVDKWDAEYYAKVNDDVYVNIDSLGATLATHLD-KPRVYIGCMKSGDVFSEPGHKW--YEPDWWKFGD 271 (342)
Q Consensus 195 nLt~Kt~~~~~wa~~~~~a~f~lKvDDDv~Vn~~~L~~~L~~~~~-~~~~yiG~~~~g~v~rd~~~kw--y~p~~w~~~~ 271 (342)
....|.-...+.....-.+++++..|+|+.|+++-|..++..... +-. .+.++..+.+. .+-| .+..+..+.+
T Consensus 14 g~N~Kv~nL~~~~~~~a~~d~~~~~DsDi~v~p~~L~~lv~~l~~p~vg-lVt~~~~~~~~---~~~~~~l~~~~~~~~~ 89 (175)
T PF13506_consen 14 GCNPKVNNLAQGLEAGAKYDYLVISDSDIRVPPDYLRELVAPLADPGVG-LVTGLPRGVPA---RGFWSRLEAAFFNFLP 89 (175)
T ss_pred CCChHHHHHHHHHHhhCCCCEEEEECCCeeECHHHHHHHHHHHhCCCCc-EEEecccccCC---cCHHHHHHHHHHhHHH
Confidence 456777777666544367999999999999999999998877643 222 22232211111 1111 1110000000
Q ss_pred ----CCccCcCccCCeeeecHHHHHHHHHhcccCCCCCcChHHHHHHHccCCCeEeeCCC
Q 019355 272 ----KKLYFRHASGEMYVISRALAKFISINRSILRTYAHDDVSAGSWFLGLDVKYLNEGK 327 (342)
Q Consensus 272 ----~~~Yp~y~~G~gYilS~dla~~I~~~~~~l~~~~~EDV~lG~~l~~l~V~~i~~~~ 327 (342)
.-.-.++|.|+.+++.+++++.+-- ...+..+--||..+|..+...|.+.+-.+.
T Consensus 90 ~~~~a~~~~~~~~G~~m~~rr~~L~~~GG-~~~l~~~ladD~~l~~~~~~~G~~v~~~~~ 148 (175)
T PF13506_consen 90 GVLQALGGAPFAWGGSMAFRREALEEIGG-FEALADYLADDYALGRRLRARGYRVVLSPY 148 (175)
T ss_pred HHHHHhcCCCceecceeeeEHHHHHHccc-HHHHhhhhhHHHHHHHHHHHCCCeEEEcch
Confidence 0124678999999999999987631 122334669999999999988887765554
No 17
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=94.68 E-value=1.7 Score=43.31 Aligned_cols=157 Identities=16% Similarity=0.119 Sum_probs=80.9
Q ss_pred CeEEEEEeecCCCCCCcchHhhHHhhhhCC---CceeeCCCCCCCCCchHHHHH---HHHHHHh-cCCccEEEEEcCeEE
Q 019355 152 GIITRFVIGRSANRGDSLDQDIDSENKQTN---DFFILDHHVEAPKEFPNKAKL---FFAYAVD-KWDAEYYAKVNDDVY 224 (342)
Q Consensus 152 ~i~v~FviG~s~~~~~~~~~~I~~E~~~~~---DIl~l~d~~D~y~nLt~Kt~~---~~~wa~~-~~~a~f~lKvDDDv~ 224 (342)
..++.+|...|.+. ..+.+++-.+++. .+.++. ..+.-.+-..|..+ .++.+.+ ..+.+|++.+|+|+.
T Consensus 70 ~~eIIVVDd~StD~---T~~i~~~~~~~~~~~~~i~vi~-~~~~~~g~~Gk~~A~n~g~~~A~~~~~~gd~llflDaD~~ 145 (384)
T TIGR03469 70 KLHVILVDDHSTDG---TADIARAAARAYGRGDRLTVVS-GQPLPPGWSGKLWAVSQGIAAARTLAPPADYLLLTDADIA 145 (384)
T ss_pred ceEEEEEeCCCCCc---HHHHHHHHHHhcCCCCcEEEec-CCCCCCCCcchHHHHHHHHHHHhccCCCCCEEEEECCCCC
Confidence 35677777666542 2222222122332 344332 22222233455433 4444443 234899999999999
Q ss_pred eeHHHHHHHHhhcCCCCceeEEecccCcccccCCCcccc---------------CCccccCCCCccCcCccCCeeeecHH
Q 019355 225 VNIDSLGATLATHLDKPRVYIGCMKSGDVFSEPGHKWYE---------------PDWWKFGDKKLYFRHASGEMYVISRA 289 (342)
Q Consensus 225 Vn~~~L~~~L~~~~~~~~~yiG~~~~g~v~rd~~~kwy~---------------p~~w~~~~~~~Yp~y~~G~gYilS~d 289 (342)
+.++.|.+++......+...++.+.. .+ ...+++ |..| ..........+.|++.+++++
T Consensus 146 ~~p~~l~~lv~~~~~~~~~~vs~~~~---~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~G~~~lirr~ 219 (384)
T TIGR03469 146 HGPDNLARLVARARAEGLDLVSLMVR---LR--CESFWEKLLIPAFVFFFQKLYPFRW-VNDPRRRTAAAAGGCILIRRE 219 (384)
T ss_pred CChhHHHHHHHHHHhCCCCEEEeccc---cc--CCCHHHHHHHHHHHHHHHHhcchhh-hcCCCccceeecceEEEEEHH
Confidence 99999888887653222222222110 00 011100 0000 001112234568999999999
Q ss_pred HHHHHHHhcccCCCCCcChHHHHHHHccCC
Q 019355 290 LAKFISINRSILRTYAHDDVSAGSWFLGLD 319 (342)
Q Consensus 290 la~~I~~~~~~l~~~~~EDV~lG~~l~~l~ 319 (342)
+.+.+---..... ...||+.++.-+...|
T Consensus 220 ~~~~vGGf~~~~~-~~~ED~~L~~r~~~~G 248 (384)
T TIGR03469 220 ALERIGGIAAIRG-ALIDDCTLAAAVKRSG 248 (384)
T ss_pred HHHHcCCHHHHhh-CcccHHHHHHHHHHcC
Confidence 9988732212212 2479999998887654
No 18
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=94.34 E-value=2.6 Score=37.74 Aligned_cols=161 Identities=9% Similarity=-0.046 Sum_probs=82.0
Q ss_pred CCeEEEEEeecCCCCCCcchHhhHHhhhhCCCceeeCCCCCCCCCchHHHHHHHHHHHhcCCccEEEEEcCeEEeeHHHH
Q 019355 151 KGIITRFVIGRSANRGDSLDQDIDSENKQTNDFFILDHHVEAPKEFPNKAKLFFAYAVDKWDAEYYAKVNDDVYVNIDSL 230 (342)
Q Consensus 151 ~~i~v~FviG~s~~~~~~~~~~I~~E~~~~~DIl~l~d~~D~y~nLt~Kt~~~~~wa~~~~~a~f~lKvDDDv~Vn~~~L 230 (342)
..+.+..+.+.+.+ .....++...+++..+..+. . + +.. +. ..++.+.+....+|++.+|||..+.++.|
T Consensus 30 ~~~evivvd~~s~d---~~~~~~~~~~~~~~~v~~i~-~-~---~~~-~~-~a~N~g~~~a~~d~v~~lD~D~~~~~~~l 99 (249)
T cd02525 30 DLIEIIVVDGGSTD---GTREIVQEYAAKDPRIRLID-N-P---KRI-QS-AGLNIGIRNSRGDIIIRVDAHAVYPKDYI 99 (249)
T ss_pred CccEEEEEeCCCCc---cHHHHHHHHHhcCCeEEEEe-C-C---CCC-ch-HHHHHHHHHhCCCEEEEECCCccCCHHHH
Confidence 34566666655543 33444444444443344332 1 1 111 11 34666666567999999999999998888
Q ss_pred HHHHhhcCCCC-ceeEEeccc--Cccccc----CCCccccCC-ccccCCCCccCcCccCCeeeecHHHHHHHHHhcccCC
Q 019355 231 GATLATHLDKP-RVYIGCMKS--GDVFSE----PGHKWYEPD-WWKFGDKKLYFRHASGEMYVISRALAKFISINRSILR 302 (342)
Q Consensus 231 ~~~L~~~~~~~-~~yiG~~~~--g~v~rd----~~~kwy~p~-~w~~~~~~~Yp~y~~G~gYilS~dla~~I~~~~~~l~ 302 (342)
..++......+ .+..|+... ..+... ....++... .+........-.++.|.+.++++++...+.--...
T Consensus 100 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-- 177 (249)
T cd02525 100 LELVEALKRTGADNVGGPMETIGESKFQKAIAVAQSSPLGSGGSAYRGGAVKIGYVDTVHHGAYRREVFEKVGGFDES-- 177 (249)
T ss_pred HHHHHHHhcCCCCEEecceecCCCChHHHHHHHHhhchhccCCccccccccccccccccccceEEHHHHHHhCCCCcc--
Confidence 88886543323 333344321 111100 000000000 00000000101145778889999998877432222
Q ss_pred CCCcChHHHHHHHccCCCeEe
Q 019355 303 TYAHDDVSAGSWFLGLDVKYL 323 (342)
Q Consensus 303 ~~~~EDV~lG~~l~~l~V~~i 323 (342)
....||..++.-+...|.+..
T Consensus 178 ~~~~eD~~l~~r~~~~G~~~~ 198 (249)
T cd02525 178 LVRNEDAELNYRLRKAGYKIW 198 (249)
T ss_pred cCccchhHHHHHHHHcCcEEE
Confidence 234799999877766654444
No 19
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=93.55 E-value=1.8 Score=37.79 Aligned_cols=180 Identities=14% Similarity=0.036 Sum_probs=88.9
Q ss_pred HHHHHHHhcCcchhhccccCCCeEEEEEeecCCCCCCcchHhhHHhhhhCC-CceeeCCCCCCCCCchHHHHHHHHHHHh
Q 019355 131 DAIRKAWMGTGAALKKRENEKGIITRFVIGRSANRGDSLDQDIDSENKQTN-DFFILDHHVEAPKEFPNKAKLFFAYAVD 209 (342)
Q Consensus 131 ~aIR~TW~~~~~~lk~le~~~~i~v~FviG~s~~~~~~~~~~I~~E~~~~~-DIl~l~d~~D~y~nLt~Kt~~~~~wa~~ 209 (342)
+.|.+++-+-... ....+.+++|-..|.+ .....+++-..+++ .+.++. ..++ .... ..+..+..
T Consensus 11 ~~l~~~l~sl~~q-----~~~~~eiiVvddgS~d---~t~~~~~~~~~~~~~~~~~~~-~~~~-~G~~----~~~n~g~~ 76 (214)
T cd04196 11 KYLREQLDSILAQ-----TYKNDELIISDDGSTD---GTVEIIKEYIDKDPFIIILIR-NGKN-LGVA----RNFESLLQ 76 (214)
T ss_pred HHHHHHHHHHHhC-----cCCCeEEEEEeCCCCC---CcHHHHHHHHhcCCceEEEEe-CCCC-ccHH----HHHHHHHH
Confidence 5566666553311 1225667777655543 22333333333443 233221 1221 1222 22233345
Q ss_pred cCCccEEEEEcCeEEeeHHHHHHHHhh-cC-CCCceeEEecc----cCcccccCCCccccCCccccCCCCccCcCccCCe
Q 019355 210 KWDAEYYAKVNDDVYVNIDSLGATLAT-HL-DKPRVYIGCMK----SGDVFSEPGHKWYEPDWWKFGDKKLYFRHASGEM 283 (342)
Q Consensus 210 ~~~a~f~lKvDDDv~Vn~~~L~~~L~~-~~-~~~~~yiG~~~----~g~v~rd~~~kwy~p~~w~~~~~~~Yp~y~~G~g 283 (342)
....+|++..|+|..+.++.|..++.. .. +...++.|.+. .+.+.....-..+.......+.......++.|++
T Consensus 77 ~~~g~~v~~ld~Dd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (214)
T cd04196 77 AADGDYVFFCDQDDIWLPDKLERLLKAFLKDDKPLLVYSDLELVDENGNPIGESFFEYQKIKPGTSFNNLLFQNVVTGCT 156 (214)
T ss_pred hCCCCEEEEECCCcccChhHHHHHHHHHhcCCCceEEecCcEEECCCCCCcccccccccccCCccCHHHHHHhCccCCce
Confidence 567999999999999998888888876 22 33334444332 1111110000000000000000112234567889
Q ss_pred eeecHHHHHHHHHhcccCCCCCcChHHHHHHHccC-CCeEeeCC
Q 019355 284 YVISRALAKFISINRSILRTYAHDDVSAGSWFLGL-DVKYLNEG 326 (342)
Q Consensus 284 YilS~dla~~I~~~~~~l~~~~~EDV~lG~~l~~l-~V~~i~~~ 326 (342)
+++.++++..+....... ...||..+...+... .+..+++.
T Consensus 157 ~~~r~~~~~~~~~~~~~~--~~~~D~~~~~~~~~~~~~~~~~~~ 198 (214)
T cd04196 157 MAFNRELLELALPFPDAD--VIMHDWWLALLASAFGKVVFLDEP 198 (214)
T ss_pred eeEEHHHHHhhccccccc--cccchHHHHHHHHHcCceEEcchh
Confidence 999999999876533322 457888887666554 35555544
No 20
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=92.24 E-value=5.3 Score=35.19 Aligned_cols=126 Identities=10% Similarity=-0.074 Sum_probs=67.9
Q ss_pred HHHHHHhcCCccEEEEEcCeEEeeHHHHHHHHhhcC-CCCceeEEecccCcc---ccc-CCCccccCC-ccccCCCCccC
Q 019355 203 FFAYAVDKWDAEYYAKVNDDVYVNIDSLGATLATHL-DKPRVYIGCMKSGDV---FSE-PGHKWYEPD-WWKFGDKKLYF 276 (342)
Q Consensus 203 ~~~wa~~~~~a~f~lKvDDDv~Vn~~~L~~~L~~~~-~~~~~yiG~~~~g~v---~rd-~~~kwy~p~-~w~~~~~~~Yp 276 (342)
.++++.+....+|++.+|+|..+.++.|..++.... +....+.|.....++ ... ..-.+.... .........++
T Consensus 73 a~n~g~~~~~~d~i~~~D~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (229)
T cd04192 73 ALTTAIKAAKGDWIVTTDADCVVPSNWLLTFVAFIQKEQIGLVAGPVIYFKGKSLLAKFQRLDWLSLLGLIAGSFGLGKP 152 (229)
T ss_pred HHHHHHHHhcCCEEEEECCCcccCHHHHHHHHHHhhcCCCcEEeeeeeecCCccHHHHHHHHHHHHHHHHHhhHHHhcCc
Confidence 346666666899999999999999988888887543 223344444321100 000 000000000 00000123455
Q ss_pred cCccCCeeeecHHHHHHHHHhcccCCCCCcChHHHHHHH--ccC-CCeEeeCCCcc
Q 019355 277 RHASGEMYVISRALAKFISINRSILRTYAHDDVSAGSWF--LGL-DVKYLNEGKFC 329 (342)
Q Consensus 277 ~y~~G~gYilS~dla~~I~~~~~~l~~~~~EDV~lG~~l--~~l-~V~~i~~~~f~ 329 (342)
..+.|+++++++++...+---... .....||..++.-+ .+. .+..+.++...
T Consensus 153 ~~~~g~~~~~rr~~~~~~ggf~~~-~~~~~eD~~~~~~~~~~g~~~~~~~~~~~~~ 207 (229)
T cd04192 153 FMCNGANMAYRKEAFFEVGGFEGN-DHIASGDDELLLAKVASKYPKVAYLKNPEAL 207 (229)
T ss_pred cccccceEEEEHHHHHHhcCCccc-cccccCCHHHHHHHHHhCCCCEEEeeCcchh
Confidence 667899999999999987543222 22445666665433 344 45555544333
No 21
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=91.35 E-value=8.2 Score=36.51 Aligned_cols=127 Identities=12% Similarity=0.178 Sum_probs=69.9
Q ss_pred HHHHHhcCCccEEEEEcCeEEeeHHHHHHHHhhcCCCCceeEE-ecc--cCcccccCC--------CccccCCccc-c--
Q 019355 204 FAYAVDKWDAEYYAKVNDDVYVNIDSLGATLATHLDKPRVYIG-CMK--SGDVFSEPG--------HKWYEPDWWK-F-- 269 (342)
Q Consensus 204 ~~wa~~~~~a~f~lKvDDDv~Vn~~~L~~~L~~~~~~~~~yiG-~~~--~g~v~rd~~--------~kwy~p~~w~-~-- 269 (342)
.+.+.+.-..+|++..|+|+.+.++-|..++......+...+| .+. .+.-...+. -.|.....|. .
T Consensus 75 ~N~g~~~A~gd~i~fLD~D~~~~~~wL~~ll~~l~~~~~~~v~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (299)
T cd02510 75 RIAGARAATGDVLVFLDSHCEVNVGWLEPLLARIAENRKTVVCPIIDVIDADTFEYRGSSGDARGGFDWSLHFKWLPLPE 154 (299)
T ss_pred HHHHHHHccCCEEEEEeCCcccCccHHHHHHHHHHhCCCeEEEeeeccccCCCeeEecCCCceeEEecccceeccccCCH
Confidence 4444554568999999999999988877777654333333332 221 010000000 0110000000 0
Q ss_pred -------CCCCccCcCccCCeeeecHHHHHHHHHhcccCCCCCcChHHHH--HHHccCCCeEeeCCCccc
Q 019355 270 -------GDKKLYFRHASGEMYVISRALAKFISINRSILRTYAHDDVSAG--SWFLGLDVKYLNEGKFCC 330 (342)
Q Consensus 270 -------~~~~~Yp~y~~G~gYilS~dla~~I~~~~~~l~~~~~EDV~lG--~~l~~l~V~~i~~~~f~~ 330 (342)
.+.....++++|+++++++++...+---...+..+..||+-+. .|..+..+..+.+....|
T Consensus 155 ~~~~~~~~~~~~~~~~~~g~~~~irr~~~~~vGgfDe~~~~~~~ED~Dl~~R~~~~G~~i~~~p~a~v~H 224 (299)
T cd02510 155 EERRRESPTAPIRSPTMAGGLFAIDREWFLELGGYDEGMDIWGGENLELSFKVWQCGGSIEIVPCSRVGH 224 (299)
T ss_pred HHhhhcCCCCCccCccccceeeEEEHHHHHHhCCCCCcccccCchhHHHHHHHHHcCCeEEEeeccEEEE
Confidence 0012334567899999999999988654445555667999775 444555555555544444
No 22
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=91.34 E-value=7.5 Score=33.91 Aligned_cols=92 Identities=20% Similarity=0.085 Sum_probs=56.0
Q ss_pred HHHHHHHHHhcCCccEEEEEcCeEEeeHHHHHHHHhhcC-CCCceeEEecccCcccccCCCccccCCccccCCCCccCcC
Q 019355 200 AKLFFAYAVDKWDAEYYAKVNDDVYVNIDSLGATLATHL-DKPRVYIGCMKSGDVFSEPGHKWYEPDWWKFGDKKLYFRH 278 (342)
Q Consensus 200 t~~~~~wa~~~~~a~f~lKvDDDv~Vn~~~L~~~L~~~~-~~~~~yiG~~~~g~v~rd~~~kwy~p~~w~~~~~~~Yp~y 278 (342)
.-..++++. ..+.+|++..|||..+..+.|..++.... +...++.|... .. ++
T Consensus 68 ~n~~~~~a~-~~~~d~v~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~-------------~~------~~------ 121 (202)
T cd04185 68 FYEGVRRAY-ELGYDWIWLMDDDAIPDPDALEKLLAYADKDNPQFLAPLVL-------------DP------DG------ 121 (202)
T ss_pred HHHHHHHHh-ccCCCEEEEeCCCCCcChHHHHHHHHHHhcCCceEecceeE-------------cC------CC------
Confidence 344556665 45789999999999999887777766543 22222211110 00 01
Q ss_pred ccCCeeeecHHHHHHHHHhcccCCCCCcChHHHHHHHccCC
Q 019355 279 ASGEMYVISRALAKFISINRSILRTYAHDDVSAGSWFLGLD 319 (342)
Q Consensus 279 ~~G~gYilS~dla~~I~~~~~~l~~~~~EDV~lG~~l~~l~ 319 (342)
.+++.++.+++...+--..... ....||+.++.-+...|
T Consensus 122 -~~~~~~~~~~~~~~~g~~~~~~-~~~~eD~~~~~r~~~~G 160 (202)
T cd04185 122 -SFVGVLISRRVVEKIGLPDKEF-FIWGDDTEYTLRASKAG 160 (202)
T ss_pred -ceEEEEEeHHHHHHhCCCChhh-hccchHHHHHHHHHHcC
Confidence 3456789999988774322222 23479999987776555
No 23
>PRK11204 N-glycosyltransferase; Provisional
Probab=91.24 E-value=14 Score=36.81 Aligned_cols=145 Identities=12% Similarity=0.081 Sum_probs=78.0
Q ss_pred cchHhhHHhhhhCCCceeeCCCCCCCCCchHHHHHHHHHHHhcCCccEEEEEcCeEEeeHHHHHHHHhhcCCCCceeEEe
Q 019355 168 SLDQDIDSENKQTNDFFILDHHVEAPKEFPNKAKLFFAYAVDKWDAEYYAKVNDDVYVNIDSLGATLATHLDKPRVYIGC 247 (342)
Q Consensus 168 ~~~~~I~~E~~~~~DIl~l~d~~D~y~nLt~Kt~~~~~wa~~~~~a~f~lKvDDDv~Vn~~~L~~~L~~~~~~~~~yiG~ 247 (342)
...+.+++..+++..+..+. ..+ |.. |. ..++.+.+..+.+|++..|+|..+.++.|..++......+++ |.
T Consensus 96 ~t~~~l~~~~~~~~~v~~i~-~~~---n~G-ka-~aln~g~~~a~~d~i~~lDaD~~~~~d~L~~l~~~~~~~~~v--~~ 167 (420)
T PRK11204 96 NTGEILDRLAAQIPRLRVIH-LAE---NQG-KA-NALNTGAAAARSEYLVCIDGDALLDPDAAAYMVEHFLHNPRV--GA 167 (420)
T ss_pred cHHHHHHHHHHhCCcEEEEE-cCC---CCC-HH-HHHHHHHHHcCCCEEEEECCCCCCChhHHHHHHHHHHhCCCe--EE
Confidence 33444444455565555442 222 322 43 345666666689999999999999999988888765333332 33
Q ss_pred cccCcccccCCC---ccccCCccccC-------CCCccCcCccCCeeeecHHHHHHHHHhcccCCCCCcChHHHHHHHcc
Q 019355 248 MKSGDVFSEPGH---KWYEPDWWKFG-------DKKLYFRHASGEMYVISRALAKFISINRSILRTYAHDDVSAGSWFLG 317 (342)
Q Consensus 248 ~~~g~v~rd~~~---kwy~p~~w~~~-------~~~~Yp~y~~G~gYilS~dla~~I~~~~~~l~~~~~EDV~lG~~l~~ 317 (342)
+...+.+.++.+ +....++.... .....+...+|.+.++.+++...+---. +..-.||+-++.-+..
T Consensus 168 v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~rr~~l~~vgg~~---~~~~~ED~~l~~rl~~ 244 (420)
T PRK11204 168 VTGNPRIRNRSTLLGRIQVGEFSSIIGLIKRAQRVYGRVFTVSGVITAFRKSALHEVGYWS---TDMITEDIDISWKLQL 244 (420)
T ss_pred EECCceeccchhHHHHHHHHHHHHhhhHHHHHHHHhCCceEecceeeeeeHHHHHHhCCCC---CCcccchHHHHHHHHH
Confidence 322111111110 00000000000 0001122357888999999988763211 1234799999988876
Q ss_pred CCCeEe
Q 019355 318 LDVKYL 323 (342)
Q Consensus 318 l~V~~i 323 (342)
.|.+..
T Consensus 245 ~G~~i~ 250 (420)
T PRK11204 245 RGWDIR 250 (420)
T ss_pred cCCeEE
Confidence 665443
No 24
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=90.87 E-value=8.1 Score=31.85 Aligned_cols=85 Identities=18% Similarity=0.140 Sum_probs=55.3
Q ss_pred HhcCCccEEEEEcCeEEeeHHHHHHHHhhcCCCCce-eEEecccCcccccCCCccccCCccccCCCCccCcCccCCeeee
Q 019355 208 VDKWDAEYYAKVNDDVYVNIDSLGATLATHLDKPRV-YIGCMKSGDVFSEPGHKWYEPDWWKFGDKKLYFRHASGEMYVI 286 (342)
Q Consensus 208 ~~~~~a~f~lKvDDDv~Vn~~~L~~~L~~~~~~~~~-yiG~~~~g~v~rd~~~kwy~p~~w~~~~~~~Yp~y~~G~gYil 286 (342)
.+..+.+|++..|||..+.++.+..++......+.. .++.. +.|++.++
T Consensus 70 ~~~~~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~~------------------------------~~~~~~~~ 119 (166)
T cd04186 70 IREAKGDYVLLLNPDTVVEPGALLELLDAAEQDPDVGIVGPK------------------------------VSGAFLLV 119 (166)
T ss_pred HhhCCCCEEEEECCCcEECccHHHHHHHHHHhCCCceEEEcc------------------------------CceeeEee
Confidence 333489999999999999998888887653322221 11111 67889999
Q ss_pred cHHHHHHHHHhcccCCCCCcChHHHHHHHccCCCeEe
Q 019355 287 SRALAKFISINRSILRTYAHDDVSAGSWFLGLDVKYL 323 (342)
Q Consensus 287 S~dla~~I~~~~~~l~~~~~EDV~lG~~l~~l~V~~i 323 (342)
++++++.+..-...... ..||..+..-+...|.+..
T Consensus 120 ~~~~~~~~~~~~~~~~~-~~eD~~~~~~~~~~g~~i~ 155 (166)
T cd04186 120 RREVFEEVGGFDEDFFL-YYEDVDLCLRARLAGYRVL 155 (166)
T ss_pred eHHHHHHcCCCChhhhc-cccHHHHHHHHHHcCCeEE
Confidence 99988876432222222 5689988766655554443
No 25
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=90.67 E-value=5.1 Score=36.32 Aligned_cols=114 Identities=16% Similarity=0.136 Sum_probs=60.5
Q ss_pred HHHHHHhcCCccEEEEEcCeEEeeHHHHHHHHhhcC-CCCceeEEeccc-CcccccCCCccc--cCCccccCC-CCccCc
Q 019355 203 FFAYAVDKWDAEYYAKVNDDVYVNIDSLGATLATHL-DKPRVYIGCMKS-GDVFSEPGHKWY--EPDWWKFGD-KKLYFR 277 (342)
Q Consensus 203 ~~~wa~~~~~a~f~lKvDDDv~Vn~~~L~~~L~~~~-~~~~~yiG~~~~-g~v~rd~~~kwy--~p~~w~~~~-~~~Yp~ 277 (342)
.++.+.+....+|++.+|+|+.+..+-|.+++.... +...+..|.... .+.-.......+ ....+.... ....+.
T Consensus 100 a~n~gi~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (251)
T cd06439 100 ALNRALALATGEIVVFTDANALLDPDALRLLVRHFADPSVGAVSGELVIVDGGGSGSGEGLYWKYENWLKRAESRLGSTV 179 (251)
T ss_pred HHHHHHHHcCCCEEEEEccccCcCHHHHHHHHHHhcCCCccEEEeEEEecCCcccchhHHHHHHHHHHHHHHHHhcCCee
Confidence 345555555679999999999999888888777653 222333333321 100000000100 000000000 112234
Q ss_pred CccCCeeeecHHHHHHHHHhcccCCCCCcChHHHHHHHccCCCeE
Q 019355 278 HASGEMYVISRALAKFISINRSILRTYAHDDVSAGSWFLGLDVKY 322 (342)
Q Consensus 278 y~~G~gYilS~dla~~I~~~~~~l~~~~~EDV~lG~~l~~l~V~~ 322 (342)
.+.|+++++.+++.. ........||..++.-+...|...
T Consensus 180 ~~~g~~~~~rr~~~~------~~~~~~~~eD~~l~~~~~~~G~~~ 218 (251)
T cd06439 180 GANGAIYAIRRELFR------PLPADTINDDFVLPLRIARQGYRV 218 (251)
T ss_pred eecchHHHhHHHHhc------CCCcccchhHHHHHHHHHHcCCeE
Confidence 467778878887766 112223479999988887666443
No 26
>cd06532 Glyco_transf_25 Glycosyltransferase family 25 [lipooligosaccharide (LOS) biosynthesis protein] is a family of glycosyltransferases involved in LOS biosynthesis. The members include the beta(1,4) galactosyltransferases: Lgt2 of Moraxella catarrhalis, LgtB and LgtE of Neisseria gonorrhoeae and Lic2A of Haemophilus influenzae. M. catarrhalis Lgt2 catalyzes the addition of galactose (Gal) to the growing chain of LOS on the cell surface. N. gonorrhoeae LgtB and LgtE link Gal-beta(1,4) to GlcNAc (N-acetylglucosamine) and Glc (glucose), respectively. The genes encoding LgtB and LgtE are two genes of a five gene locus involved in the synthesis of gonococcal LOS. LgtE is believed to perform the first step in LOS biosynthesis.
Probab=90.66 E-value=3.1 Score=34.80 Aligned_cols=117 Identities=12% Similarity=0.032 Sum_probs=66.2
Q ss_pred EEeCCCCCHHHHHHHHHHHhcCcchhhccccCCCeEEEEEeecCCCCCCcchHhhHHhhhhCCCceeeCCCCCCCCCchH
Q 019355 119 GILTRFGRKNNRDAIRKAWMGTGAALKKRENEKGIITRFVIGRSANRGDSLDQDIDSENKQTNDFFILDHHVEAPKEFPN 198 (342)
Q Consensus 119 ~V~S~~~~~~rR~aIR~TW~~~~~~lk~le~~~~i~v~FviG~s~~~~~~~~~~I~~E~~~~~DIl~l~d~~D~y~nLt~ 198 (342)
.|.+-+...+||+.+++..... ++.+.|+-|-.... .....+......+.....-....-+--.-.+
T Consensus 3 ~vInL~~~~~Rr~~~~~~~~~~-----------~~~~~~~~Avd~~~--~~~~~~~~~~~~~~~~~~~~~l~~gEiGC~l 69 (128)
T cd06532 3 FVINLDRSTDRRERMEAQLAAL-----------GLDFEFFDAVDGKD--LSEEELAALYDALFLPRYGRPLTPGEIGCFL 69 (128)
T ss_pred EEEECCCCHHHHHHHHHHHHHc-----------CCCeEEEecccccc--CCHHHHHHHhHHHhhhhcCCCCChhhHHHHH
Confidence 3566778889999999854443 35566776654431 1111121111100000000001111112234
Q ss_pred HHHHHHHHHHhcCCccEEEEEcCeEEeeHHHHHHHHhhcCCCCceeEEecccCcccccCCCccccCCccccCCCCccCcC
Q 019355 199 KAKLFFAYAVDKWDAEYYAKVNDDVYVNIDSLGATLATHLDKPRVYIGCMKSGDVFSEPGHKWYEPDWWKFGDKKLYFRH 278 (342)
Q Consensus 199 Kt~~~~~wa~~~~~a~f~lKvDDDv~Vn~~~L~~~L~~~~~~~~~yiG~~~~g~v~rd~~~kwy~p~~w~~~~~~~Yp~y 278 (342)
-.+..++.+++ .+.++.+-..||+.+..+
T Consensus 70 SH~~~w~~~~~-~~~~~alIlEDDv~~~~~-------------------------------------------------- 98 (128)
T cd06532 70 SHYKLWQKIVE-SNLEYALILEDDAILDPD-------------------------------------------------- 98 (128)
T ss_pred HHHHHHHHHHH-cCCCeEEEEccCcEECCC--------------------------------------------------
Confidence 45566666665 356899999999999877
Q ss_pred ccCCeeeecHHHHHHHHHhccc
Q 019355 279 ASGEMYVISRALAKFISINRSI 300 (342)
Q Consensus 279 ~~G~gYilS~dla~~I~~~~~~ 300 (342)
+..+|++|+..|+++......
T Consensus 99 -~~~~Y~vs~~~A~~ll~~~~~ 119 (128)
T cd06532 99 -GTAGYLVSRKGAKKLLAALEP 119 (128)
T ss_pred -CceEEEeCHHHHHHHHHhCCC
Confidence 345899999999998875443
No 27
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=89.73 E-value=4.6 Score=33.07 Aligned_cols=92 Identities=15% Similarity=0.135 Sum_probs=47.4
Q ss_pred HHHHHHhcCCccEEEEEcCeEEeeHHHHHHHHhhcCC-CCceeEEecc-c-C-cccccCCC---ccccCCccc-cCCCCc
Q 019355 203 FFAYAVDKWDAEYYAKVNDDVYVNIDSLGATLATHLD-KPRVYIGCMK-S-G-DVFSEPGH---KWYEPDWWK-FGDKKL 274 (342)
Q Consensus 203 ~~~wa~~~~~a~f~lKvDDDv~Vn~~~L~~~L~~~~~-~~~~yiG~~~-~-g-~v~rd~~~---kwy~p~~w~-~~~~~~ 274 (342)
.+..+.+....+|++.+|||.++..+.|..++..... ...+.+|... . . ........ .+....... ......
T Consensus 69 ~~n~~~~~a~~~~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (169)
T PF00535_consen 69 ARNRGIKHAKGEYILFLDDDDIISPDWLEELVEALEKNPPDVVIGSVIYIDDDNRYPDRRLRFSFWNRFERKIFNNIRFW 148 (169)
T ss_dssp HHHHHHHH--SSEEEEEETTEEE-TTHHHHHHHHHHHCTTEEEEEEEEEEECTTETEECCCTSEEEECCHCHHHHTTHST
T ss_pred cccccccccceeEEEEeCCCceEcHHHHHHHHHHHHhCCCcEEEEEEEEecCCccccccccchhhhhhhhhHHHHhhhcC
Confidence 3344444455679999999999998877776665543 3445555532 1 1 11111111 011110000 111223
Q ss_pred cCcCccCCeeeecHHHHHHH
Q 019355 275 YFRHASGEMYVISRALAKFI 294 (342)
Q Consensus 275 Yp~y~~G~gYilS~dla~~I 294 (342)
-..++.|++.++++++.+.+
T Consensus 149 ~~~~~~~~~~~~rr~~~~~~ 168 (169)
T PF00535_consen 149 KISFFIGSCALFRRSVFEEI 168 (169)
T ss_dssp TSSEESSSCEEEEEHHHHHC
T ss_pred CcccccccEEEEEHHHHHhh
Confidence 34567888999999988754
No 28
>PF13632 Glyco_trans_2_3: Glycosyl transferase family group 2
Probab=88.47 E-value=1.4 Score=38.46 Aligned_cols=115 Identities=11% Similarity=-0.019 Sum_probs=67.2
Q ss_pred EEEEEcCeEEeeHHHHHHHHhhcCCCCceeEE--ecccCcccccCCCccccCCc-cc------cCCCCccCcCccCCeee
Q 019355 215 YYAKVNDDVYVNIDSLGATLATHLDKPRVYIG--CMKSGDVFSEPGHKWYEPDW-WK------FGDKKLYFRHASGEMYV 285 (342)
Q Consensus 215 f~lKvDDDv~Vn~~~L~~~L~~~~~~~~~yiG--~~~~g~v~rd~~~kwy~p~~-w~------~~~~~~Yp~y~~G~gYi 285 (342)
|++-+|+|+.+..+-|...+.... .|++-+. ..... .....-.++...++ +. .......+.++.|++.+
T Consensus 1 ~v~~~DaDt~~~~d~l~~~~~~~~-~~~~~~vq~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~ 78 (193)
T PF13632_consen 1 YVLFLDADTRLPPDFLERLVAALE-DPKVDAVQGPIIFR-NRGSLLTRLQDFEYAISHGLSRLSQSSLGRPLFLSGSGML 78 (193)
T ss_pred CEEEEcCCCCCChHHHHHHHHHHh-CCCceEEEccEEec-CCCChhheeehhhhhhhhhhhHHHHHhcCCCccccCccee
Confidence 688999999999998888877655 3332222 22110 00000111211111 00 00123456678999999
Q ss_pred ecHHHHHHHHHhcccCCCCCcChHHHHHHHccC--CCeEeeCCCcccCCC
Q 019355 286 ISRALAKFISINRSILRTYAHDDVSAGSWFLGL--DVKYLNEGKFCCSSW 333 (342)
Q Consensus 286 lS~dla~~I~~~~~~l~~~~~EDV~lG~~l~~l--~V~~i~~~~f~~~~~ 333 (342)
+++++++.+.--. -..+..||..++.=+... .+..+++...++..|
T Consensus 79 ~r~~~l~~vg~~~--~~~~~~ED~~l~~~l~~~G~~~~~~~~~~~~~~~p 126 (193)
T PF13632_consen 79 FRREALREVGGFD--DPFSIGEDMDLGFRLRRAGYRIVYVPDAIVYTEAP 126 (193)
T ss_pred eeHHHHHHhCccc--ccccccchHHHHHHHHHCCCEEEEecccceeeeCC
Confidence 9999999875221 234557999998776544 466677765555544
No 29
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=87.93 E-value=16 Score=37.06 Aligned_cols=167 Identities=13% Similarity=0.095 Sum_probs=89.1
Q ss_pred CeEEEEEeecCCCCCCcchHhhHHhhhhCCCceeeCCCCCCCCCchHHHHHHHHHHHhcCCccEEEEEcCeEEeeHHHHH
Q 019355 152 GIITRFVIGRSANRGDSLDQDIDSENKQTNDFFILDHHVEAPKEFPNKAKLFFAYAVDKWDAEYYAKVNDDVYVNIDSLG 231 (342)
Q Consensus 152 ~i~v~FviG~s~~~~~~~~~~I~~E~~~~~DIl~l~d~~D~y~nLt~Kt~~~~~wa~~~~~a~f~lKvDDDv~Vn~~~L~ 231 (342)
+.++.+|...+. |...+.+++..+++..+.++. ..+ |.. |. ..++.+....+.+|++..|+|..+.++.|.
T Consensus 104 ~~eIivVdDgs~---D~t~~~~~~~~~~~~~v~vv~-~~~---n~G-ka-~AlN~gl~~a~~d~iv~lDAD~~~~~d~L~ 174 (444)
T PRK14583 104 NIEVIAINDGSS---DDTAQVLDALLAEDPRLRVIH-LAH---NQG-KA-IALRMGAAAARSEYLVCIDGDALLDKNAVP 174 (444)
T ss_pred CeEEEEEECCCC---ccHHHHHHHHHHhCCCEEEEE-eCC---CCC-HH-HHHHHHHHhCCCCEEEEECCCCCcCHHHHH
Confidence 456655554443 233344444445565554432 111 222 43 355666666789999999999999999998
Q ss_pred HHHhhcCCCCceeEEecccCcccccCC---CccccCCcccc-C------CCCccCcCccCCeeeecHHHHHHHHHhcccC
Q 019355 232 ATLATHLDKPRVYIGCMKSGDVFSEPG---HKWYEPDWWKF-G------DKKLYFRHASGEMYVISRALAKFISINRSIL 301 (342)
Q Consensus 232 ~~L~~~~~~~~~yiG~~~~g~v~rd~~---~kwy~p~~w~~-~------~~~~Yp~y~~G~gYilS~dla~~I~~~~~~l 301 (342)
.++......++ +|.+...+..++.. .+....++... + ....-+..++|.+.++.+++++.+---.+
T Consensus 175 ~lv~~~~~~~~--~g~v~g~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~g~~~~~sG~~~~~rr~al~~vGg~~~-- 250 (444)
T PRK14583 175 YLVAPLIANPR--TGAVTGNPRIRTRSTLIGRVQVGEFSSIIGLIKRTQRVYGQVFTVSGVVAAFRRRALADVGYWSP-- 250 (444)
T ss_pred HHHHHHHhCCC--eEEEEccceecCCCcchhhHHHHHHHHHHHHHHHHHHHhCCceEecCceeEEEHHHHHHcCCCCC--
Confidence 88775532333 23332222222211 11111110000 0 00011123578889999999887642211
Q ss_pred CCCCcChHHHHHHHccCCCeEeeCCCcccCC
Q 019355 302 RTYAHDDVSAGSWFLGLDVKYLNEGKFCCSS 332 (342)
Q Consensus 302 ~~~~~EDV~lG~~l~~l~V~~i~~~~f~~~~ 332 (342)
..-.||.-+|.-+...|.+..-.+.-.|..
T Consensus 251 -~~i~ED~dl~~rl~~~G~~i~~~p~a~~~~ 280 (444)
T PRK14583 251 -DMITEDIDISWKLQLKHWSVFFEPRGLCWI 280 (444)
T ss_pred -CcccccHHHHHHHHHcCCeEEEeeccEEee
Confidence 234699999988887776555444444443
No 30
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=87.85 E-value=14 Score=32.99 Aligned_cols=127 Identities=9% Similarity=-0.068 Sum_probs=64.5
Q ss_pred HHHHHHHHhcCCccEEEEEcCeEEeeHHHHHHHH---hhcCCCCce-eEEecccCcccccCCCccccCCcc-----ccCC
Q 019355 201 KLFFAYAVDKWDAEYYAKVNDDVYVNIDSLGATL---ATHLDKPRV-YIGCMKSGDVFSEPGHKWYEPDWW-----KFGD 271 (342)
Q Consensus 201 ~~~~~wa~~~~~a~f~lKvDDDv~Vn~~~L~~~L---~~~~~~~~~-yiG~~~~g~v~rd~~~kwy~p~~w-----~~~~ 271 (342)
-.+++.+... +++|++..|||+.+.++.|..++ ......+.+ .+|+.............+....++ ....
T Consensus 65 N~g~~~a~~~-~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (237)
T cd02526 65 NIGIKAALEN-GADYVLLFDQDSVPPPDMVEKLLAYKILSDKNSNIGAVGPRIIDRRTGENSPGVRKSGYKLRIQKEGEE 143 (237)
T ss_pred hHHHHHHHhC-CCCEEEEECCCCCcCHhHHHHHHHHHHhhccCCCeEEEeeeEEcCCCCeeccceeccCccceecccccC
Confidence 3455554432 68999999999999999888885 322223332 223321100000000001111000 0001
Q ss_pred CCccCcCccCCeeeecHHHHHHHHHhcccCCCCCcChHHHHHHHccCC--CeEeeCCCcc
Q 019355 272 KKLYFRHASGEMYVISRALAKFISINRSILRTYAHDDVSAGSWFLGLD--VKYLNEGKFC 329 (342)
Q Consensus 272 ~~~Yp~y~~G~gYilS~dla~~I~~~~~~l~~~~~EDV~lG~~l~~l~--V~~i~~~~f~ 329 (342)
...-..++.|++.++++++.+.+---...+ .+..||+-++.-+...| +..+.+....
T Consensus 144 ~~~~~~~~~~~~~~~rr~~~~~~ggfd~~~-~~~~eD~d~~~r~~~~G~~~~~~~~~~v~ 202 (237)
T cd02526 144 GLKEVDFLITSGSLISLEALEKVGGFDEDL-FIDYVDTEWCLRARSKGYKIYVVPDAVLK 202 (237)
T ss_pred CceEeeeeeccceEEcHHHHHHhCCCCHHH-cCccchHHHHHHHHHcCCcEEEEcCeEEE
Confidence 111223456778899999988875322222 23478999987776655 4344443333
No 31
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=87.50 E-value=3.6 Score=35.12 Aligned_cols=96 Identities=11% Similarity=0.015 Sum_probs=58.3
Q ss_pred HHHHHhcCCccEEEEEcCeEEeeHHHHHHHHhhcCCCCceeEEecccCcccccCCCccccCCccccCCCCccCcCccCCe
Q 019355 204 FAYAVDKWDAEYYAKVNDDVYVNIDSLGATLATHLDKPRVYIGCMKSGDVFSEPGHKWYEPDWWKFGDKKLYFRHASGEM 283 (342)
Q Consensus 204 ~~wa~~~~~a~f~lKvDDDv~Vn~~~L~~~L~~~~~~~~~yiG~~~~g~v~rd~~~kwy~p~~w~~~~~~~Yp~y~~G~g 283 (342)
++.+.+....+|++..|+|..+.++-|..++....+ .....|.... ... ..-.....|+.
T Consensus 71 ~n~g~~~a~g~~i~~lD~D~~~~~~~l~~~~~~~~~-~~~v~g~~~~------------~~~-------~~~~~~~~~~~ 130 (182)
T cd06420 71 RNKAIAAAKGDYLIFIDGDCIPHPDFIADHIELAEP-GVFLSGSRVL------------LNE-------KLTERGIRGCN 130 (182)
T ss_pred HHHHHHHhcCCEEEEEcCCcccCHHHHHHHHHHhCC-CcEEecceee------------ccc-------ccceeEeccce
Confidence 445555567899999999999998888888776532 2222232110 000 00013346777
Q ss_pred eeecHHHHHHHHHhcccCCCCCcChHHHHHHHccCC
Q 019355 284 YVISRALAKFISINRSILRTYAHDDVSAGSWFLGLD 319 (342)
Q Consensus 284 YilS~dla~~I~~~~~~l~~~~~EDV~lG~~l~~l~ 319 (342)
+++.+.....+.--.+....+..||+-++.=+...|
T Consensus 131 ~~~~r~~~~~~ggf~~~~~~~~~eD~~l~~r~~~~g 166 (182)
T cd06420 131 MSFWKKDLLAVNGFDEEFTGWGGEDSELVARLLNSG 166 (182)
T ss_pred EEEEHHHHHHhCCCCcccccCCcchHHHHHHHHHcC
Confidence 888888877544333333344589999987776666
No 32
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=86.76 E-value=2.7 Score=37.56 Aligned_cols=156 Identities=16% Similarity=0.137 Sum_probs=79.4
Q ss_pred eEEEEEeecCCCCCCcchHhhHHhhhhCCCceeeCCCCCCCCCchHHHHHHHHHHHhcCCccEEEEEcCeEEeeHHHHHH
Q 019355 153 IITRFVIGRSANRGDSLDQDIDSENKQTNDFFILDHHVEAPKEFPNKAKLFFAYAVDKWDAEYYAKVNDDVYVNIDSLGA 232 (342)
Q Consensus 153 i~v~FviG~s~~~~~~~~~~I~~E~~~~~DIl~l~d~~D~y~nLt~Kt~~~~~wa~~~~~a~f~lKvDDDv~Vn~~~L~~ 232 (342)
..+.+|...+.+ .....+ .+...+..+.++. .+. ..|.. .+..+.+..+.+|++.+|+|+.+.++.|.+
T Consensus 29 ~eiivvdd~s~d---~~~~~l-~~~~~~~~~~v~~--~~~----~g~~~-a~n~g~~~a~~d~v~~lD~D~~~~~~~l~~ 97 (235)
T cd06434 29 LEIIVVTDGDDE---PYLSIL-SQTVKYGGIFVIT--VPH----PGKRR-ALAEGIRHVTTDIVVLLDSDTVWPPNALPE 97 (235)
T ss_pred CEEEEEeCCCCh---HHHHHH-HhhccCCcEEEEe--cCC----CChHH-HHHHHHHHhCCCEEEEECCCceeChhHHHH
Confidence 456666655432 222223 2345566655542 221 22433 234444445899999999999999999988
Q ss_pred HHhhcCCCCceeEEecccCcccccC-CCccc------cCC-ccccCC---CCccCcCccCCeeeecHHHHHHHHHhcc--
Q 019355 233 TLATHLDKPRVYIGCMKSGDVFSEP-GHKWY------EPD-WWKFGD---KKLYFRHASGEMYVISRALAKFISINRS-- 299 (342)
Q Consensus 233 ~L~~~~~~~~~yiG~~~~g~v~rd~-~~kwy------~p~-~w~~~~---~~~Yp~y~~G~gYilS~dla~~I~~~~~-- 299 (342)
++.... .+.+ |++.......+. ...|. ... .+..+. ...-...++|++.++.++++..+.-...
T Consensus 98 l~~~~~-~~~v--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~rr~~l~~~~~~~~~~ 174 (235)
T cd06434 98 MLKPFE-DPKV--GGVGTNQRILRPRDSKWSFLAAEYLERRNEEIRAAMSYDGGVPCLSGRTAAYRTEILKDFLFLEEFT 174 (235)
T ss_pred HHHhcc-CCCE--eEEcCceEeecCcccHHHHHHHHHHHHHHHHHHHHHhhCCCEEEccCcHHHHHHHHHhhhhhHHHhh
Confidence 887765 3332 222111001111 11110 000 000000 0011123567888888888876542211
Q ss_pred -----cCCCCCcChHHHHHHHccCCCeE
Q 019355 300 -----ILRTYAHDDVSAGSWFLGLDVKY 322 (342)
Q Consensus 300 -----~l~~~~~EDV~lG~~l~~l~V~~ 322 (342)
..+....||..++.-+...|.+.
T Consensus 175 ~~~~~~~~~~~~eD~~l~~~~~~~g~~~ 202 (235)
T cd06434 175 NETFMGRRLNAGDDRFLTRYVLSHGYKT 202 (235)
T ss_pred hhhhcCCCCCcCchHHHHHHHHHCCCeE
Confidence 12345689999988777666543
No 33
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=86.39 E-value=23 Score=31.34 Aligned_cols=123 Identities=15% Similarity=0.064 Sum_probs=69.2
Q ss_pred HHHHHhcCCccEEEEEcCeEEeeHHHHHHHHhhcCCCCce--eEEecc--cCcc----cccC--CCccccCC-ccccCCC
Q 019355 204 FAYAVDKWDAEYYAKVNDDVYVNIDSLGATLATHLDKPRV--YIGCMK--SGDV----FSEP--GHKWYEPD-WWKFGDK 272 (342)
Q Consensus 204 ~~wa~~~~~a~f~lKvDDDv~Vn~~~L~~~L~~~~~~~~~--yiG~~~--~g~v----~rd~--~~kwy~p~-~w~~~~~ 272 (342)
+..+.+..+.+|++.+|+|.++.++.|..++......+.+ ..|... .... .+.. ....+... .+. ..
T Consensus 76 ~n~~~~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 153 (234)
T cd06421 76 LNNALAHTTGDFVAILDADHVPTPDFLRRTLGYFLDDPKVALVQTPQFFYNPDPFDWLADGAPNEQELFYGVIQPG--RD 153 (234)
T ss_pred HHHHHHhCCCCEEEEEccccCcCccHHHHHHHHHhcCCCeEEEecceEEecCCcchhHHHHHHHHHHHHHHHHHHH--Hh
Confidence 4555555579999999999999999888888765432332 222211 1100 0000 00000000 000 00
Q ss_pred CccCcCccCCeeeecHHHHHHHHHhcccCCCCCcChHHHHHHHccCC--CeEeeCCCcccC
Q 019355 273 KLYFRHASGEMYVISRALAKFISINRSILRTYAHDDVSAGSWFLGLD--VKYLNEGKFCCS 331 (342)
Q Consensus 273 ~~Yp~y~~G~gYilS~dla~~I~~~~~~l~~~~~EDV~lG~~l~~l~--V~~i~~~~f~~~ 331 (342)
.....++.|++.++++++.+.+.--. ..+..||..++.-+...| +..+++......
T Consensus 154 ~~~~~~~~g~~~~~r~~~~~~ig~~~---~~~~~eD~~l~~r~~~~g~~i~~~~~~~~~~~ 211 (234)
T cd06421 154 RWGAAFCCGSGAVVRREALDEIGGFP---TDSVTEDLATSLRLHAKGWRSVYVPEPLAAGL 211 (234)
T ss_pred hcCCceecCceeeEeHHHHHHhCCCC---ccceeccHHHHHHHHHcCceEEEecCcccccc
Confidence 11245678999999999998874321 234479999998886655 555555544433
No 34
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=85.46 E-value=13 Score=33.24 Aligned_cols=114 Identities=18% Similarity=0.180 Sum_probs=63.8
Q ss_pred HHHHHHhc--CCccEEEEEcCeEEeeHHHHHHHHhhcCCCCceeEEecccCcccccCCCccccCC-ccc---cC-----C
Q 019355 203 FFAYAVDK--WDAEYYAKVNDDVYVNIDSLGATLATHLDKPRVYIGCMKSGDVFSEPGHKWYEPD-WWK---FG-----D 271 (342)
Q Consensus 203 ~~~wa~~~--~~a~f~lKvDDDv~Vn~~~L~~~L~~~~~~~~~yiG~~~~g~v~rd~~~kwy~p~-~w~---~~-----~ 271 (342)
.+.++.+. .+++|++..|+|+.+.++.|..++.... .+. +|.+......++....++... +|. .+ .
T Consensus 73 a~n~g~~~a~~~~d~i~~lD~D~~~~~~~l~~l~~~~~-~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (236)
T cd06435 73 ALNYALERTAPDAEIIAVIDADYQVEPDWLKRLVPIFD-DPR--VGFVQAPQDYRDGEESLFKRMCYAEYKGFFDIGMVS 149 (236)
T ss_pred HHHHHHHhcCCCCCEEEEEcCCCCcCHHHHHHHHHHhc-CCC--eeEEecCccccCCCccHHHHHHhHHHHHHHHHHhcc
Confidence 45666664 2479999999999999999999887653 232 233211111111111111100 000 00 0
Q ss_pred CC-ccCcCccCCeeeecHHHHHHHHHhcccCCCCCcChHHHHHHHccCCCeE
Q 019355 272 KK-LYFRHASGEMYVISRALAKFISINRSILRTYAHDDVSAGSWFLGLDVKY 322 (342)
Q Consensus 272 ~~-~Yp~y~~G~gYilS~dla~~I~~~~~~l~~~~~EDV~lG~~l~~l~V~~ 322 (342)
.. .-..++.|++.++++++...+---.. .+..||+-++.=+...|.+.
T Consensus 150 ~~~~~~~~~~g~~~~~rr~~~~~iGgf~~---~~~~eD~dl~~r~~~~G~~~ 198 (236)
T cd06435 150 RNERNAIIQHGTMCLIRRSALDDVGGWDE---WCITEDSELGLRMHEAGYIG 198 (236)
T ss_pred ccccCceEEecceEEEEHHHHHHhCCCCC---ccccchHHHHHHHHHCCcEE
Confidence 00 00124678889999999998743222 23489999987776655443
No 35
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=85.44 E-value=23 Score=30.55 Aligned_cols=116 Identities=14% Similarity=0.025 Sum_probs=63.5
Q ss_pred HHHHHHhcCCccEEEEEcCeEEeeHHHHHHHHhhcC--CCCceeEEecccCcccccCCCccccCCccccCCCCc-cCcCc
Q 019355 203 FFAYAVDKWDAEYYAKVNDDVYVNIDSLGATLATHL--DKPRVYIGCMKSGDVFSEPGHKWYEPDWWKFGDKKL-YFRHA 279 (342)
Q Consensus 203 ~~~wa~~~~~a~f~lKvDDDv~Vn~~~L~~~L~~~~--~~~~~yiG~~~~g~v~rd~~~kwy~p~~w~~~~~~~-Yp~y~ 279 (342)
.++++.+....+|++..|+|..+.++.|...+.... ++..+..+.... .+....++.+.....+.... +..-+
T Consensus 74 a~n~g~~~a~~d~i~~ld~D~~~~~~~l~~~~~~~~~~~~~~~v~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (202)
T cd04184 74 ATNSALELATGEFVALLDHDDELAPHALYEVVKALNEHPDADLIYSDEDK----IDEGGKRSEPFFKPDWSPDLLLSQNY 149 (202)
T ss_pred HHHHHHHhhcCCEEEEECCCCcCChHHHHHHHHHHHhCCCCCEEEccHHh----ccCCCCEeccccCCCCCHHHhhhcCC
Confidence 355555555789999999999999998888887652 333343332210 01111111111000001111 11123
Q ss_pred cCCeeeecHHHHHHHHHhcccCCCCCcChHHHHHHHccCCCeEee
Q 019355 280 SGEMYVISRALAKFISINRSILRTYAHDDVSAGSWFLGLDVKYLN 324 (342)
Q Consensus 280 ~G~gYilS~dla~~I~~~~~~l~~~~~EDV~lG~~l~~l~V~~i~ 324 (342)
.|++-+++++++..+---... ....||.-++.-+...|.+.+.
T Consensus 150 ~~~~~~~~r~~~~~iggf~~~--~~~~eD~~l~~rl~~~g~~~~~ 192 (202)
T cd04184 150 IGHLLVYRRSLVRQVGGFREG--FEGAQDYDLVLRVSEHTDRIAH 192 (202)
T ss_pred ccceEeEEHHHHHHhCCCCcC--cccchhHHHHHHHHhccceEEE
Confidence 456668899988877532122 2357999888877766655443
No 36
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=85.12 E-value=6.6 Score=33.51 Aligned_cols=116 Identities=13% Similarity=-0.050 Sum_probs=64.1
Q ss_pred HHHHHHHhcCCccEEEEEcCeEEeeHHHHHHHHhhc--CCCCceeEEeccc-CcccccCCCccccCCccccCCCCccCcC
Q 019355 202 LFFAYAVDKWDAEYYAKVNDDVYVNIDSLGATLATH--LDKPRVYIGCMKS-GDVFSEPGHKWYEPDWWKFGDKKLYFRH 278 (342)
Q Consensus 202 ~~~~wa~~~~~a~f~lKvDDDv~Vn~~~L~~~L~~~--~~~~~~yiG~~~~-g~v~rd~~~kwy~p~~w~~~~~~~Yp~y 278 (342)
..++.+.+..+.+|++.+|+|..+..+.+...+... .+...+..|.... .........+...+.. ........+
T Consensus 65 ~a~n~~~~~a~~~~v~~ld~D~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 141 (202)
T cd06433 65 DAMNKGIALATGDIIGFLNSDDTLLPGALLAVVAAFAEHPEVDVVYGDVLLVDENGRVIGRRRPPPFL---DKFLLYGMP 141 (202)
T ss_pred HHHHHHHHHcCCCEEEEeCCCcccCchHHHHHHHHHHhCCCccEEEeeeEEEcCCCCcccCCCCcchh---hhHHhhcCc
Confidence 344555665678999999999999999998887333 2344555555321 1000000010000110 011123345
Q ss_pred ccCCeeeecHHHHHHHHHhcccCCCCCcChHHHHHHHccCCCeE
Q 019355 279 ASGEMYVISRALAKFISINRSILRTYAHDDVSAGSWFLGLDVKY 322 (342)
Q Consensus 279 ~~G~gYilS~dla~~I~~~~~~l~~~~~EDV~lG~~l~~l~V~~ 322 (342)
..|++.++++++...+..-...+ ...||.-+..-+...|...
T Consensus 142 ~~~~~~~~~~~~~~~~~~f~~~~--~~~~D~~~~~r~~~~g~~~ 183 (202)
T cd06433 142 ICHQATFFRRSLFEKYGGFDESY--RIAADYDLLLRLLLAGKIF 183 (202)
T ss_pred ccCcceEEEHHHHHHhCCCchhh--CchhhHHHHHHHHHcCCce
Confidence 67778899999998875322222 2357887766665555433
No 37
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=85.01 E-value=5.2 Score=34.34 Aligned_cols=134 Identities=11% Similarity=0.088 Sum_probs=71.0
Q ss_pred CeEEEEEeecCCCCCCcchHhhHHhhhhCCCceeeCCCCCCCCCchHHHHHHHHHHHhcCCccEEEEEcCeEEeeHHHHH
Q 019355 152 GIITRFVIGRSANRGDSLDQDIDSENKQTNDFFILDHHVEAPKEFPNKAKLFFAYAVDKWDAEYYAKVNDDVYVNIDSLG 231 (342)
Q Consensus 152 ~i~v~FviG~s~~~~~~~~~~I~~E~~~~~DIl~l~d~~D~y~nLt~Kt~~~~~wa~~~~~a~f~lKvDDDv~Vn~~~L~ 231 (342)
.+.++.|-+.+.+ .....+++...++..+.++. +.. |. -|. .+++.+.++...+|++.+|+|....++.|.
T Consensus 29 ~~eiivvdd~s~d---~t~~~~~~~~~~~~~i~~i~-~~~---n~-G~~-~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~ 99 (181)
T cd04187 29 DYEIIFVDDGSTD---RTLEILRELAARDPRVKVIR-LSR---NF-GQQ-AALLAGLDHARGDAVITMDADLQDPPELIP 99 (181)
T ss_pred CeEEEEEeCCCCc---cHHHHHHHHHhhCCCEEEEE-ecC---CC-CcH-HHHHHHHHhcCCCEEEEEeCCCCCCHHHHH
Confidence 4566666655543 22333444344555454442 322 21 122 334445554567999999999999988888
Q ss_pred HHHhhcCCCCceeEEecccC--cccccCCCccccCCccccCCCCccCcCccCCeeeecHHHHHHHHH
Q 019355 232 ATLATHLDKPRVYIGCMKSG--DVFSEPGHKWYEPDWWKFGDKKLYFRHASGEMYVISRALAKFISI 296 (342)
Q Consensus 232 ~~L~~~~~~~~~yiG~~~~g--~v~rd~~~kwy~p~~w~~~~~~~Yp~y~~G~gYilS~dla~~I~~ 296 (342)
.++....+...+.+|..... ...+.-..+.+....... .....+...|+.+++++++++.+..
T Consensus 100 ~l~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~r~~~~~i~~ 164 (181)
T cd04187 100 EMLAKWEEGYDVVYGVRKNRKESWLKRLTSKLFYRLINKL--SGVDIPDNGGDFRLMDRKVVDALLL 164 (181)
T ss_pred HHHHHHhCCCcEEEEEecCCcchHHHHHHHHHHHHHHHHH--cCCCCCCCCCCEEEEcHHHHHHHHh
Confidence 88876545556666664311 110000000000000001 1123345678889999999998764
No 38
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=84.40 E-value=5.9 Score=32.29 Aligned_cols=94 Identities=9% Similarity=0.070 Sum_probs=50.1
Q ss_pred HHHHHHHhcCCccEEEEEcCeEEeeHHHHHHHHhhcCCCCc--eeEEecccC----cccccCC-CccccCCcc--ccCCC
Q 019355 202 LFFAYAVDKWDAEYYAKVNDDVYVNIDSLGATLATHLDKPR--VYIGCMKSG----DVFSEPG-HKWYEPDWW--KFGDK 272 (342)
Q Consensus 202 ~~~~wa~~~~~a~f~lKvDDDv~Vn~~~L~~~L~~~~~~~~--~yiG~~~~g----~v~rd~~-~kwy~p~~w--~~~~~ 272 (342)
....++.+..+.+|++.+|+|..+..+.|..++......+. +..|..... ....... ..++..... .....
T Consensus 68 ~~~n~~~~~~~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (180)
T cd06423 68 GALNAGLRHAKGDIVVVLDADTILEPDALKRLVVPFFADPKVGAVQGRVRVRNGSENLLTRLQAIEYLSIFRLGRRAQSA 147 (180)
T ss_pred HHHHHHHHhcCCCEEEEECCCCCcChHHHHHHHHHhccCCCeeeEeeeEEEecCcCcceeccchheecceeeeeeehhhe
Confidence 34455555558999999999999998888877454433332 222332111 0111000 000000000 00001
Q ss_pred CccCcCccCCeeeecHHHHHHHH
Q 019355 273 KLYFRHASGEMYVISRALAKFIS 295 (342)
Q Consensus 273 ~~Yp~y~~G~gYilS~dla~~I~ 295 (342)
..+..++.|.+++++++++..+-
T Consensus 148 ~~~~~~~~g~~~~~~~~~~~~~g 170 (180)
T cd06423 148 LGGVLVLSGAFGAFRREALREVG 170 (180)
T ss_pred ecceeecCchHHHHHHHHHHHhC
Confidence 23445678999999999988764
No 39
>PF04646 DUF604: Protein of unknown function, DUF604; InterPro: IPR006740 This family includes a conserved region found in several uncharacterised plant proteins.
Probab=83.72 E-value=1.7 Score=41.26 Aligned_cols=54 Identities=20% Similarity=0.167 Sum_probs=43.3
Q ss_pred cCCeeeecHHHHHHHHHhc-ccC---CCCCcChHHHHHHHccCCCeEeeCCCcccCCC
Q 019355 280 SGEMYVISRALAKFISINR-SIL---RTYAHDDVSAGSWFLGLDVKYLNEGKFCCSSW 333 (342)
Q Consensus 280 ~G~gYilS~dla~~I~~~~-~~l---~~~~~EDV~lG~~l~~l~V~~i~~~~f~~~~~ 333 (342)
+|+|++||..||+.|.... .++ +.+.--|-.+..|+..+||....+++||...-
T Consensus 12 GGgG~~iS~pLa~~L~~~~d~C~~r~~~~~g~D~~i~~C~~~lgv~LT~e~g~hQ~Di 69 (255)
T PF04646_consen 12 GGGGFAISYPLAKALAKMQDDCIERYPHLYGGDQRIQACIAELGVPLTKEPGFHQMDI 69 (255)
T ss_pred cCceeEEcHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCceecCCceeEee
Confidence 7999999999999998742 233 33335789999999999999989999987654
No 40
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=82.69 E-value=25 Score=31.89 Aligned_cols=119 Identities=8% Similarity=-0.005 Sum_probs=65.7
Q ss_pred HHHHHHHhcCCccEEEEEcCeEEeeHHHHHHHHhhcCCC-Cce-eEEe-cccCcccccCCCccccCCccccC-------C
Q 019355 202 LFFAYAVDKWDAEYYAKVNDDVYVNIDSLGATLATHLDK-PRV-YIGC-MKSGDVFSEPGHKWYEPDWWKFG-------D 271 (342)
Q Consensus 202 ~~~~wa~~~~~a~f~lKvDDDv~Vn~~~L~~~L~~~~~~-~~~-yiG~-~~~g~v~rd~~~kwy~p~~w~~~-------~ 271 (342)
..++.+.+....+|++.+|+|+.+.++.|.+.+...... +.+ ++|+ +.....-.....+++..+++..+ .
T Consensus 74 ~a~n~g~~~a~gd~i~~~DaD~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (241)
T cd06427 74 KACNYALAFARGEYVVIYDAEDAPDPDQLKKAVAAFARLDDKLACVQAPLNYYNARENWLTRMFALEYAAWFDYLLPGLA 153 (241)
T ss_pred HHHHHHHHhcCCCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEeCceEeeCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666678999999999999999999888765422 332 2222 11100000000011100000000 0
Q ss_pred CCccCcCccCCeeeecHHHHHHHHHhcccCCCCCcChHHHHHHHccCCCeEe
Q 019355 272 KKLYFRHASGEMYVISRALAKFISINRSILRTYAHDDVSAGSWFLGLDVKYL 323 (342)
Q Consensus 272 ~~~Yp~y~~G~gYilS~dla~~I~~~~~~l~~~~~EDV~lG~~l~~l~V~~i 323 (342)
....+..++|++.++++++.+.+---.. ....||..++.=+...|.+.+
T Consensus 154 ~~~~~~~~~g~~~~~rr~~~~~vgg~~~---~~~~eD~~l~~rl~~~G~r~~ 202 (241)
T cd06427 154 RLGLPIPLGGTSNHFRTDVLRELGGWDP---FNVTEDADLGLRLARAGYRTG 202 (241)
T ss_pred hcCCeeecCCchHHhhHHHHHHcCCCCc---ccchhhHHHHHHHHHCCceEE
Confidence 1123334678889999999988743221 134799999877766554443
No 41
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=82.45 E-value=24 Score=30.46 Aligned_cols=113 Identities=12% Similarity=0.057 Sum_probs=60.6
Q ss_pred HHHHHhcCCccEEEEEcCeEEeeHHHHHHHHhhcC--CCCceeEEeccc----CcccccCCCccccCCc----cccCCCC
Q 019355 204 FAYAVDKWDAEYYAKVNDDVYVNIDSLGATLATHL--DKPRVYIGCMKS----GDVFSEPGHKWYEPDW----WKFGDKK 273 (342)
Q Consensus 204 ~~wa~~~~~a~f~lKvDDDv~Vn~~~L~~~L~~~~--~~~~~yiG~~~~----g~v~rd~~~kwy~p~~----w~~~~~~ 273 (342)
++.+....+.+|++..|+|.++.++.|..++.... +.-.++.|.+.. +.... .+. .|.. ..+.. .
T Consensus 72 ~N~g~~~a~gd~i~~lD~Dd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~-~ 146 (201)
T cd04195 72 LNEGLKHCTYDWVARMDTDDISLPDRFEKQLDFIEKNPEIDIVGGGVLEFDSDGNDIG---KRR-LPTSHDDILKFAR-R 146 (201)
T ss_pred HHHHHHhcCCCEEEEeCCccccCcHHHHHHHHHHHhCCCeEEEcccEEEECCCCCeec---ccc-CCCCHHHHHHHhc-c
Confidence 45555556799999999999999988888877643 222344444321 11110 000 1110 00100 0
Q ss_pred ccCcCccCCeeeecHHHHHHHHHhcccCCCCCcChHHHHHHHccC--CCeEeeCC
Q 019355 274 LYFRHASGEMYVISRALAKFISINRSILRTYAHDDVSAGSWFLGL--DVKYLNEG 326 (342)
Q Consensus 274 ~Yp~y~~G~gYilS~dla~~I~~~~~~l~~~~~EDV~lG~~l~~l--~V~~i~~~ 326 (342)
.- + ..|+..++.+.+...+---. +....||..+...+... .+.++++.
T Consensus 147 ~~-~-~~~~~~~~rr~~~~~~g~~~---~~~~~eD~~~~~r~~~~g~~~~~~~~~ 196 (201)
T cd04195 147 RS-P-FNHPTVMFRKSKVLAVGGYQ---DLPLVEDYALWARMLANGARFANLPEI 196 (201)
T ss_pred CC-C-CCChHHhhhHHHHHHcCCcC---CCCCchHHHHHHHHHHcCCceecccHH
Confidence 11 1 23556677777766543211 12569999998777544 45555443
No 42
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=81.44 E-value=21 Score=31.41 Aligned_cols=89 Identities=9% Similarity=-0.012 Sum_probs=50.4
Q ss_pred HHHHhcCCccEEEEEcCeEEeeHHHHHHHHhh-cCCCCceeEEecc-cCcccccCCCccc---cC---CccccCCCCccC
Q 019355 205 AYAVDKWDAEYYAKVNDDVYVNIDSLGATLAT-HLDKPRVYIGCMK-SGDVFSEPGHKWY---EP---DWWKFGDKKLYF 276 (342)
Q Consensus 205 ~wa~~~~~a~f~lKvDDDv~Vn~~~L~~~L~~-~~~~~~~yiG~~~-~g~v~rd~~~kwy---~p---~~w~~~~~~~Yp 276 (342)
+...+....+|++.+|+|..+.++.|..++.. ..+...+..|... .+... . .-.++ .+ ..+.......-.
T Consensus 71 n~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (224)
T cd06442 71 IEGFKAARGDVIVVMDADLSHPPEYIPELLEAQLEGGADLVIGSRYVEGGGV-E-GWGLKRKLISRGANLLARLLLGRKV 148 (224)
T ss_pred HHHHHHcCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCEEEEeeeecCCcc-C-CCcHHHHHHHHHHHHHHHHHcCCCC
Confidence 33334345699999999999999988888886 3455556666432 11110 0 00010 00 000000001123
Q ss_pred cCccCCeeeecHHHHHHHH
Q 019355 277 RHASGEMYVISRALAKFIS 295 (342)
Q Consensus 277 ~y~~G~gYilS~dla~~I~ 295 (342)
..++|++.+++++++..+.
T Consensus 149 ~~~~~~~~~~~r~~~~~ig 167 (224)
T cd06442 149 SDPTSGFRAYRREVLEKLI 167 (224)
T ss_pred CCCCCccchhhHHHHHHHh
Confidence 4578888899999999886
No 43
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=81.15 E-value=11 Score=36.04 Aligned_cols=134 Identities=16% Similarity=0.122 Sum_probs=73.3
Q ss_pred CCCceeeCCCCCCCCCchH--HHHHHHHHHHhcCCccEEEEEcCeEEeeHHHHHHHHhhcCCCCce-eEEec-cc-C-cc
Q 019355 180 TNDFFILDHHVEAPKEFPN--KAKLFFAYAVDKWDAEYYAKVNDDVYVNIDSLGATLATHLDKPRV-YIGCM-KS-G-DV 253 (342)
Q Consensus 180 ~~DIl~l~d~~D~y~nLt~--Kt~~~~~wa~~~~~a~f~lKvDDDv~Vn~~~L~~~L~~~~~~~~~-yiG~~-~~-g-~v 253 (342)
+.++.++. +..|+-. =.-..+..+.+..+. |++-.++|+.+.++.|.++++.....+.. ..|.. .. + +.
T Consensus 55 ~~~v~~i~----~~~NlG~agg~n~g~~~a~~~~~~-~~l~LN~D~~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~ 129 (305)
T COG1216 55 FPNVRLIE----NGENLGFAGGFNRGIKYALAKGDD-YVLLLNPDTVVEPDLLEELLKAAEEDPAAGVVGPLIRNYDESL 129 (305)
T ss_pred CCcEEEEE----cCCCccchhhhhHHHHHHhcCCCc-EEEEEcCCeeeChhHHHHHHHHHHhCCCCeEeeeeEecCCCCc
Confidence 67777653 2223211 111455565553222 99999999999999999998877544333 33332 11 1 10
Q ss_pred c---ccC-----CCcc-ccCCc--c-ccCCCCccCcCccCCeeeecHHHHHHHHHhcccCCCCCcChHHHHHHHccCC
Q 019355 254 F---SEP-----GHKW-YEPDW--W-KFGDKKLYFRHASGEMYVISRALAKFISINRSILRTYAHDDVSAGSWFLGLD 319 (342)
Q Consensus 254 ~---rd~-----~~kw-y~p~~--w-~~~~~~~Yp~y~~G~gYilS~dla~~I~~~~~~l~~~~~EDV~lG~~l~~l~ 319 (342)
. +.+ ...| +.+.. + .+.+.....+++.|++.++++++.+.+---.. --.+..||+-++.=+...|
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~li~~~~~~~vG~~de-~~F~y~eD~D~~~R~~~~G 206 (305)
T COG1216 130 YIDRRGGESDGLTGGWRASPLLEIAPDLSSYLEVVASLSGACLLIRREAFEKVGGFDE-RFFIYYEDVDLCLRARKAG 206 (305)
T ss_pred chheeccccccccccceecccccccccccchhhhhhhcceeeeEEcHHHHHHhCCCCc-ccceeehHHHHHHHHHHcC
Confidence 0 000 0111 11110 0 00111122235799999999999999876222 1234599999987776665
No 44
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=80.58 E-value=50 Score=32.57 Aligned_cols=169 Identities=10% Similarity=-0.009 Sum_probs=95.8
Q ss_pred eEEEEEeecCCCCCCcchHhhHHhhhhCCCceeeCCCCCCCCCchHHHHHHHHHHHhcCCccEEEEEcCeEEeeHHHHHH
Q 019355 153 IITRFVIGRSANRGDSLDQDIDSENKQTNDFFILDHHVEAPKEFPNKAKLFFAYAVDKWDAEYYAKVNDDVYVNIDSLGA 232 (342)
Q Consensus 153 i~v~FviG~s~~~~~~~~~~I~~E~~~~~DIl~l~d~~D~y~nLt~Kt~~~~~wa~~~~~a~f~lKvDDDv~Vn~~~L~~ 232 (342)
..+..|...+. |...+.+++-..+++..+.+ .+. .+-...-...+.++....+.++++..|-|+.+..+.|.+
T Consensus 85 ~evivv~d~~~---d~~~~~~~~~~~~~~~~~~~-~~~---~~~~~gK~~al~~~l~~~~~d~V~~~DaD~~~~~d~l~~ 157 (439)
T COG1215 85 YEVIVVDDGST---DETYEILEELGAEYGPNFRV-IYP---EKKNGGKAGALNNGLKRAKGDVVVILDADTVPEPDALRE 157 (439)
T ss_pred ceEEEECCCCC---hhHHHHHHHHHhhcCcceEE-Eec---cccCccchHHHHHHHhhcCCCEEEEEcCCCCCChhHHHH
Confidence 56666665443 34445555555666533333 111 111222245667777766799999999999999999999
Q ss_pred HHhhcCCCCce-eEEecc--cCcccccCCCccccCCcc-------ccCCCCccCcCccCCeeeecHHHHHHHHHhcccCC
Q 019355 233 TLATHLDKPRV-YIGCMK--SGDVFSEPGHKWYEPDWW-------KFGDKKLYFRHASGEMYVISRALAKFISINRSILR 302 (342)
Q Consensus 233 ~L~~~~~~~~~-yiG~~~--~g~v~rd~~~kwy~p~~w-------~~~~~~~Yp~y~~G~gYilS~dla~~I~~~~~~l~ 302 (342)
.+......+.. +.|... .++-....-.+-..-++. ...........+.|...++.+++++.+-- ...
T Consensus 158 ~~~~f~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~G~~~~~rr~aL~~~g~---~~~ 234 (439)
T COG1215 158 LVSPFEDPPVGAVVGTPRIRNRPDPSNLLGRIQAIEYLSAFYFRLRAASKGGLISFLSGSSSAFRRSALEEVGG---WLE 234 (439)
T ss_pred HHhhhcCCCeeEEeCCceeeecCChhhhcchhcchhhhhhHHHhhhhhhhcCCeEEEcceeeeEEHHHHHHhCC---CCC
Confidence 99876544333 333221 000000000000000100 00112335778999999999999998872 233
Q ss_pred CCCcChHHHHHHHccCCCeEeeCCCcccC
Q 019355 303 TYAHDDVSAGSWFLGLDVKYLNEGKFCCS 331 (342)
Q Consensus 303 ~~~~EDV~lG~~l~~l~V~~i~~~~f~~~ 331 (342)
..--||..++..+...|.+-...++-.+.
T Consensus 235 ~~i~ED~~lt~~l~~~G~~~~~~~~~~~~ 263 (439)
T COG1215 235 DTITEDADLTLRLHLRGYRVVYVPEAIVW 263 (439)
T ss_pred CceeccHHHHHHHHHCCCeEEEeecceEe
Confidence 45579999999998666554443333333
No 45
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=79.78 E-value=36 Score=34.46 Aligned_cols=112 Identities=10% Similarity=0.112 Sum_probs=60.5
Q ss_pred HHHHHHHhcCCccEEEEEcCeEEeeHHHHHHHHhhcCCCCcee--EEecccCc-ccccCCCc--cccCC--ccc----cC
Q 019355 202 LFFAYAVDKWDAEYYAKVNDDVYVNIDSLGATLATHLDKPRVY--IGCMKSGD-VFSEPGHK--WYEPD--WWK----FG 270 (342)
Q Consensus 202 ~~~~wa~~~~~a~f~lKvDDDv~Vn~~~L~~~L~~~~~~~~~y--iG~~~~g~-v~rd~~~k--wy~p~--~w~----~~ 270 (342)
..++++.+..+.+|++..|+|..+.++.|.+++......+.+- .|.....+ ........ ++..+ +.+ ++
T Consensus 121 ~AlN~gl~~s~g~~v~~~DaD~~~~~d~L~~l~~~f~~~~~v~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l 200 (439)
T TIGR03111 121 KALNAAIYNSIGKYIIHIDSDGKLHKDAIKNMVTRFENNPDIHAMTGVILTDKELIEKTKGRFLKLIRRCEYFEYAQAFL 200 (439)
T ss_pred HHHHHHHHHccCCEEEEECCCCCcChHHHHHHHHHHHhCCCeEEEEeEEecCchhhhhhcchhhhHhHHhHHHHHHHHHH
Confidence 3456666767789999999999999999998887654333332 23332211 11000110 01100 000 00
Q ss_pred ------CCCccCcCccCCeeeecHHHHHHHHHhcccCCCCCcChHHHHHHHc
Q 019355 271 ------DKKLYFRHASGEMYVISRALAKFISINRSILRTYAHDDVSAGSWFL 316 (342)
Q Consensus 271 ------~~~~Yp~y~~G~gYilS~dla~~I~~~~~~l~~~~~EDV~lG~~l~ 316 (342)
.....+..++|++.++.++++..+---. ...-.||.-++.=+.
T Consensus 201 ~~r~~~s~~~~~~~~sGa~~~~Rr~~l~~vggf~---~~~i~ED~~l~~rl~ 249 (439)
T TIGR03111 201 AGRNFESQVNSLFTLSGAFSAFRRETILKTQLYN---SETVGEDTDMTFQIR 249 (439)
T ss_pred hhhHHHHhcCCeEEEccHHHhhhHHHHHHhCCCC---CCCcCccHHHHHHHH
Confidence 0011222357888888888877653211 112389999986553
No 46
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=77.75 E-value=52 Score=29.40 Aligned_cols=121 Identities=13% Similarity=0.021 Sum_probs=63.2
Q ss_pred HHHHHHhcCCccEEEEEcCeEEeeHHHHHHHHhhcCCCCceeEEecccCcccccCCCccccC-----Cc--cc---cCC-
Q 019355 203 FFAYAVDKWDAEYYAKVNDDVYVNIDSLGATLATHLDKPRVYIGCMKSGDVFSEPGHKWYEP-----DW--WK---FGD- 271 (342)
Q Consensus 203 ~~~wa~~~~~a~f~lKvDDDv~Vn~~~L~~~L~~~~~~~~~yiG~~~~g~v~rd~~~kwy~p-----~~--w~---~~~- 271 (342)
.++.+.+....+|++.+|.|+.+.++.|..++... ..+. +|++.......++...|... .. +. ...
T Consensus 78 a~n~g~~~a~~~~i~~~DaD~~~~~~~l~~~~~~~-~~~~--v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (232)
T cd06437 78 ALAEGMKVAKGEYVAIFDADFVPPPDFLQKTPPYF-ADPK--LGFVQTRWGHINANYSLLTRVQAMSLDYHFTIEQVARS 154 (232)
T ss_pred HHHHHHHhCCCCEEEEEcCCCCCChHHHHHhhhhh-cCCC--eEEEecceeeEcCCCchhhHhhhhhHHhhhhHhHhhHh
Confidence 35566666689999999999999999988855433 2232 23332111111111222100 00 00 000
Q ss_pred CCccCcCccCCeeeecHHHHHHHHHhcccCCCCCcChHHHHHHHccCC--CeEeeCCCcc
Q 019355 272 KKLYFRHASGEMYVISRALAKFISINRSILRTYAHDDVSAGSWFLGLD--VKYLNEGKFC 329 (342)
Q Consensus 272 ~~~Yp~y~~G~gYilS~dla~~I~~~~~~l~~~~~EDV~lG~~l~~l~--V~~i~~~~f~ 329 (342)
.......+.|++-++.+++...+---.. ....||+.++.-+...| +..+++...+
T Consensus 155 ~~~~~~~~~g~~~~~rr~~~~~vgg~~~---~~~~ED~~l~~rl~~~G~~~~~~~~~~v~ 211 (232)
T cd06437 155 STGLFFNFNGTAGVWRKECIEDAGGWNH---DTLTEDLDLSYRAQLKGWKFVYLDDVVVP 211 (232)
T ss_pred hcCCeEEeccchhhhhHHHHHHhCCCCC---CcchhhHHHHHHHHHCCCeEEEeccceee
Confidence 0111112356666788888877632111 23479999987776555 4445444433
No 47
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=75.04 E-value=73 Score=30.05 Aligned_cols=167 Identities=14% Similarity=0.115 Sum_probs=87.9
Q ss_pred CCCeEEEEEeecCCCCCCcchHhhHHhhhhCCCceeeCCCCCCCCCchHHHHHHHHHHHhcCCccEEEEEcCeEEeeHHH
Q 019355 150 EKGIITRFVIGRSANRGDSLDQDIDSENKQTNDFFILDHHVEAPKEFPNKAKLFFAYAVDKWDAEYYAKVNDDVYVNIDS 229 (342)
Q Consensus 150 ~~~i~v~FviG~s~~~~~~~~~~I~~E~~~~~DIl~l~d~~D~y~nLt~Kt~~~~~wa~~~~~a~f~lKvDDDv~Vn~~~ 229 (342)
...+++++|-+.+.. ..+..|.+-.+.++-+..+. ..+ ....-.++ .+.+-+++....+|++..|.|+.+.++.
T Consensus 32 ~~~~eiIvvd~~s~~---~~~~~l~~~~~~~~~~~~i~-~~~-~~~~f~~a-~arN~g~~~A~~d~l~flD~D~i~~~~~ 105 (281)
T PF10111_consen 32 DPDFEIIVVDDGSSD---EFDEELKKLCEKNGFIRYIR-HED-NGEPFSRA-KARNIGAKYARGDYLIFLDADCIPSPDF 105 (281)
T ss_pred CCCEEEEEEECCCch---hHHHHHHHHHhccCceEEEE-cCC-CCCCcCHH-HHHHHHHHHcCCCEEEEEcCCeeeCHHH
Confidence 456777777666553 34456666666666551221 111 11111111 2334445555899999999999999999
Q ss_pred HHHHHh---hcCC-CCceeEE-ecccCccc-----ccCCCccccCCccccCC--CCcc-CcCccCCeeeecHHHHHHHHH
Q 019355 230 LGATLA---THLD-KPRVYIG-CMKSGDVF-----SEPGHKWYEPDWWKFGD--KKLY-FRHASGEMYVISRALAKFISI 296 (342)
Q Consensus 230 L~~~L~---~~~~-~~~~yiG-~~~~g~v~-----rd~~~kwy~p~~w~~~~--~~~Y-p~y~~G~gYilS~dla~~I~~ 296 (342)
+.+.+. .... ...++++ +....... ......|.....-.+.. .+.+ .....|++.+++++.-..|--
T Consensus 106 i~~~~~~~~~l~~~~~~~~~~p~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~i~r~~f~~iGG 185 (281)
T PF10111_consen 106 IEKLLNHVKKLDKNPNAFLVYPCLYLSEEGSEKFYSQFKNLWDHEFLESFISGKNSLWEFIAFASSCFLINREDFLEIGG 185 (281)
T ss_pred HHHHHHHHHHHhcCCCceEEEeeeeccchhhHHHhhcchhcchHHHHHHHhhccccccccccccceEEEEEHHHHHHhCC
Confidence 999988 3322 2233332 22111110 00000110000000111 1111 123356899999998888765
Q ss_pred hcccCCCCCcChHHHHHHHccCCCeE
Q 019355 297 NRSILRTYAHDDVSAGSWFLGLDVKY 322 (342)
Q Consensus 297 ~~~~l~~~~~EDV~lG~~l~~l~V~~ 322 (342)
-......+..||.=++.=+...+...
T Consensus 186 fDE~f~G~G~ED~D~~~RL~~~~~~~ 211 (281)
T PF10111_consen 186 FDERFRGWGYEDIDFGYRLKKAGYKF 211 (281)
T ss_pred CCccccCCCcchHHHHHHHHHcCCcE
Confidence 55556667899998886666555443
No 48
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=73.76 E-value=77 Score=29.42 Aligned_cols=126 Identities=9% Similarity=-0.094 Sum_probs=61.6
Q ss_pred HHHHHHhcCCccEEEEEcCeEEeeHHHHHHHHhhcCCCC-c-eeEEecc--cCcccccCC---CccccCCc-cccCCCCc
Q 019355 203 FFAYAVDKWDAEYYAKVNDDVYVNIDSLGATLATHLDKP-R-VYIGCMK--SGDVFSEPG---HKWYEPDW-WKFGDKKL 274 (342)
Q Consensus 203 ~~~wa~~~~~a~f~lKvDDDv~Vn~~~L~~~L~~~~~~~-~-~yiG~~~--~g~v~rd~~---~kwy~p~~-w~~~~~~~ 274 (342)
++++|.+ .+++|++..|||+.+..+.|..++......+ . ..+|... .......+. ..+..+.. ........
T Consensus 65 Gi~~a~~-~~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (281)
T TIGR01556 65 GLDASFR-RGVQGVLLLDQDSRPGNAFLAAQWKLLSAENGQACALGPRFFDRGTSRRLPAIHLDGLLLRQISLDGLTTPQ 143 (281)
T ss_pred HHHHHHH-CCCCEEEEECCCCCCCHHHHHHHHHHHHhcCCceEEECCeEEcCCCcccCCceeecccceeeecccccCCce
Confidence 5566654 3789999999999999888887776543221 2 2233211 000000000 00000000 00000011
Q ss_pred cCcCccCCeeeecHHHHHHHHHhcccCCCCCcChHHHHHHHccCC--CeEeeCCCccc
Q 019355 275 YFRHASGEMYVISRALAKFISINRSILRTYAHDDVSAGSWFLGLD--VKYLNEGKFCC 330 (342)
Q Consensus 275 Yp~y~~G~gYilS~dla~~I~~~~~~l~~~~~EDV~lG~~l~~l~--V~~i~~~~f~~ 330 (342)
-..++.++|.++++++.+.+---...+ .+..||+-+..=+...| +-.+++..+.|
T Consensus 144 ~~~~~~~sg~li~~~~~~~iG~fde~~-fi~~~D~e~~~R~~~~G~~i~~~~~~~~~H 200 (281)
T TIGR01556 144 KTSFLISSGCLITREVYQRLGMMDEEL-FIDHVDTEWSLRAQNYGIPLYIDPDIVLEH 200 (281)
T ss_pred eccEEEcCcceeeHHHHHHhCCccHhh-cccchHHHHHHHHHHCCCEEEEeCCEEEEE
Confidence 123445566689999999875322222 23468887754444333 34444444433
No 49
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=72.41 E-value=35 Score=29.89 Aligned_cols=112 Identities=11% Similarity=-0.068 Sum_probs=59.0
Q ss_pred HHHHHhcCCccEEEEEcCeEEeeHHHHHHHHhhcCCCCceeEEecccCcccccCCCccccCCccccCCCCccCcCccCCe
Q 019355 204 FAYAVDKWDAEYYAKVNDDVYVNIDSLGATLATHLDKPRVYIGCMKSGDVFSEPGHKWYEPDWWKFGDKKLYFRHASGEM 283 (342)
Q Consensus 204 ~~wa~~~~~a~f~lKvDDDv~Vn~~~L~~~L~~~~~~~~~yiG~~~~g~v~rd~~~kwy~p~~w~~~~~~~Yp~y~~G~g 283 (342)
+..+.+....+|++.+|+|..+.++.|..++......+ ..+|.......-......+..-.++..+..... + .++.+
T Consensus 64 ~n~g~~~a~~~~i~~~D~D~~~~~~~l~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~ 140 (221)
T cd02522 64 MNAGAAAARGDWLLFLHADTRLPPDWDAAIIETLRADG-AVAGAFRLRFDDPGPRLRLLELGANLRSRLFGL-P-YGDQG 140 (221)
T ss_pred HHHHHHhccCCEEEEEcCCCCCChhHHHHHHHHhhcCC-cEEEEEEeeecCCccchhhhhhcccceecccCC-C-cCCce
Confidence 34444545689999999999999888888766543333 344442100000000000001111000001111 1 24567
Q ss_pred eeecHHHHHHHHHhcccCCCCCcChHHHHHHHccCCCe
Q 019355 284 YVISRALAKFISINRSILRTYAHDDVSAGSWFLGLDVK 321 (342)
Q Consensus 284 YilS~dla~~I~~~~~~l~~~~~EDV~lG~~l~~l~V~ 321 (342)
.++++++.+.+---.... ..||.-++.=+...|..
T Consensus 141 ~~~r~~~~~~~G~fd~~~---~~ED~d~~~r~~~~G~~ 175 (221)
T cd02522 141 LFIRRELFEELGGFPELP---LMEDVELVRRLRRRGRP 175 (221)
T ss_pred EEEEHHHHHHhCCCCccc---cccHHHHHHHHHhCCCE
Confidence 899999887775332222 68999887666655533
No 50
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=71.24 E-value=13 Score=36.71 Aligned_cols=89 Identities=18% Similarity=0.160 Sum_probs=53.2
Q ss_pred hHHHHHHHHHHHhcCCccEEEEEcCeEEeeHH---HHHHHHhhcCCCCceeEEecccCcccccCCCccccCCccccCCCC
Q 019355 197 PNKAKLFFAYAVDKWDAEYYAKVNDDVYVNID---SLGATLATHLDKPRVYIGCMKSGDVFSEPGHKWYEPDWWKFGDKK 273 (342)
Q Consensus 197 t~Kt~~~~~wa~~~~~a~f~lKvDDDv~Vn~~---~L~~~L~~~~~~~~~yiG~~~~g~v~rd~~~kwy~p~~w~~~~~~ 273 (342)
..=.+.++.|+.+..++++++.+|||..+.++ -+.++|......+++++=+-.+ + .++..... ..+..
T Consensus 82 a~hyk~aln~vF~~~~~~~vIILEDDl~~sPdFf~yf~~~l~~y~~D~~v~~ISa~N-----d-nG~~~~~~---~~~~~ 152 (334)
T cd02514 82 ARHYKWALTQTFNLFGYSFVIILEDDLDIAPDFFSYFQATLPLLEEDPSLWCISAWN-----D-NGKEHFVD---DTPSL 152 (334)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCCCccCHhHHHHHHHHHHHHhcCCCEEEEEeec-----c-CCcccccC---CCcce
Confidence 33334477777765579999999999999988 4455665555555554322111 0 11111100 00112
Q ss_pred ccC-cCccCCeeeecHHHHHHH
Q 019355 274 LYF-RHASGEMYVISRALAKFI 294 (342)
Q Consensus 274 ~Yp-~y~~G~gYilS~dla~~I 294 (342)
.|. .|+.|.|.++.+++-..+
T Consensus 153 lyrs~ff~glGWml~r~~W~e~ 174 (334)
T cd02514 153 LYRTDFFPGLGWMLTRKLWKEL 174 (334)
T ss_pred EEEecCCCchHHHHHHHHHHHh
Confidence 333 567899999999998877
No 51
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin. Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.
Probab=69.39 E-value=7.2 Score=35.90 Aligned_cols=107 Identities=13% Similarity=0.002 Sum_probs=61.6
Q ss_pred CCccEEEEEcCeEEeeHHHHHHHHhhcCCCCce--eEEecccCcccccCCCcccc----CCcc------ccC-CCCccCc
Q 019355 211 WDAEYYAKVNDDVYVNIDSLGATLATHLDKPRV--YIGCMKSGDVFSEPGHKWYE----PDWW------KFG-DKKLYFR 277 (342)
Q Consensus 211 ~~a~f~lKvDDDv~Vn~~~L~~~L~~~~~~~~~--yiG~~~~g~v~rd~~~kwy~----p~~w------~~~-~~~~Yp~ 277 (342)
.+.+|++.+|.|+.+..+.|..++......|++ ..|.... .++...|.. -+++ ..+ ..-.+..
T Consensus 72 a~~e~i~~~DaD~~~~~~~l~~l~~~~~~~p~vg~v~g~~~~----~~~~~~~~~~~q~~ey~~~~~~~~~~~s~~g~~~ 147 (244)
T cd04190 72 DDPEFILLVDADTKFDPDSIVQLYKAMDKDPEIGGVCGEIHP----MGKKQGPLVMYQVFEYAISHWLDKAFESVFGFVT 147 (244)
T ss_pred CCCCEEEEECCCCcCCHhHHHHHHHHHHhCCCEEEEEeeeEE----cCCcchhHHHhHheehhhhhhhcccHHHcCCceE
Confidence 479999999999999999988888765333432 2233211 011111110 0110 000 1124456
Q ss_pred CccCCeeeecHHHHHHHHHhccc----------C-------CCCCcChHHHHHHHccCCCe
Q 019355 278 HASGEMYVISRALAKFISINRSI----------L-------RTYAHDDVSAGSWFLGLDVK 321 (342)
Q Consensus 278 y~~G~gYilS~dla~~I~~~~~~----------l-------~~~~~EDV~lG~~l~~l~V~ 321 (342)
.+.|+++++.+++.+.+...... + ...-.||..++..+...|.+
T Consensus 148 ~~~G~~~~~R~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ED~~l~~~l~~~G~~ 208 (244)
T cd04190 148 CLPGCFSMYRIEALKGDNGGKGPLLDYAYLTNTVDSLHKKNNLDLGEDRILCTLLLKAGPK 208 (244)
T ss_pred ECCCceEEEEehhhcCCccccccchhhccccCcccchHHHHHHhHhcccceeHHHhccCCc
Confidence 67899999999988765322110 0 11247999999888766644
No 52
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=67.27 E-value=77 Score=30.81 Aligned_cols=135 Identities=7% Similarity=-0.027 Sum_probs=69.0
Q ss_pred CCeEEEEEeecCCCCCCcchHhhHHhhhhCCC-ceeeCCCCCCCCCchHHHHHHHHHHHhcCCccEEEEEcCeEEeeHHH
Q 019355 151 KGIITRFVIGRSANRGDSLDQDIDSENKQTND-FFILDHHVEAPKEFPNKAKLFFAYAVDKWDAEYYAKVNDDVYVNIDS 229 (342)
Q Consensus 151 ~~i~v~FviG~s~~~~~~~~~~I~~E~~~~~D-Il~l~d~~D~y~nLt~Kt~~~~~wa~~~~~a~f~lKvDDDv~Vn~~~ 229 (342)
..+.+++|-..|.+ ...+.+++-.+++++ ++.+ ....++ -|.- ++..+.++.+.+|++.+|+|.-.+++.
T Consensus 37 ~~~EIIvVDDgS~D---~T~~il~~~~~~~~~~v~~i-~~~~n~----G~~~-A~~~G~~~A~gd~vv~~DaD~q~~p~~ 107 (325)
T PRK10714 37 KEYEILLIDDGSSD---NSAEMLVEAAQAPDSHIVAI-LLNRNY----GQHS-AIMAGFSHVTGDLIITLDADLQNPPEE 107 (325)
T ss_pred CCEEEEEEeCCCCC---cHHHHHHHHHhhcCCcEEEE-EeCCCC----CHHH-HHHHHHHhCCCCEEEEECCCCCCCHHH
Confidence 34678888776654 222233322333444 3322 122222 1111 233334445789999999999999999
Q ss_pred HHHHHhhcCCCCceeEEeccc--CcccccCCCccccCCccccCCCCccCcCccCCeeeecHHHHHHHHH
Q 019355 230 LGATLATHLDKPRVYIGCMKS--GDVFSEPGHKWYEPDWWKFGDKKLYFRHASGEMYVISRALAKFISI 296 (342)
Q Consensus 230 L~~~L~~~~~~~~~yiG~~~~--g~v~rd~~~kwy~p~~w~~~~~~~Yp~y~~G~gYilS~dla~~I~~ 296 (342)
+.++++.......+..|.... .++.|.-.++.+.-.. ....+..++.+.+| .-++++++++.+..
T Consensus 108 i~~l~~~~~~~~DvV~~~r~~~~~~~~r~~~s~~~~~l~-~~~~g~~~~d~~~g-fr~~~r~~~~~l~~ 174 (325)
T PRK10714 108 IPRLVAKADEGYDVVGTVRQNRQDSWFRKTASKMINRLI-QRTTGKAMGDYGCM-LRAYRRHIVDAMLH 174 (325)
T ss_pred HHHHHHHHHhhCCEEEEEEcCCCCcHHHHHHHHHHHHHH-HHHcCCCCCCCCcC-eEEEcHHHHHHHHH
Confidence 888887754333444444321 2222222222211000 01112344444433 45899999998864
No 53
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=64.54 E-value=1.2e+02 Score=32.94 Aligned_cols=130 Identities=18% Similarity=0.107 Sum_probs=71.6
Q ss_pred CchHHHHHHHHHHHhcCCccEEEEEcCeEEeeHHHHHHHHhhcCCCCce-eEEec---ccCccc-ccCCCccccCCcc-c
Q 019355 195 EFPNKAKLFFAYAVDKWDAEYYAKVNDDVYVNIDSLGATLATHLDKPRV-YIGCM---KSGDVF-SEPGHKWYEPDWW-K 268 (342)
Q Consensus 195 nLt~Kt~~~~~wa~~~~~a~f~lKvDDDv~Vn~~~L~~~L~~~~~~~~~-yiG~~---~~g~v~-rd~~~kwy~p~~w-~ 268 (342)
|...|.- .++.+.+..+.+|++..|.|+.+..+.|..++......+++ .+++. .+..++ ++-......+.+. .
T Consensus 212 n~~~KAg-nLN~al~~a~gd~Il~lDAD~v~~pd~L~~~v~~f~~dp~v~~Vqtp~~f~~p~~~~~nl~~~~~~~~e~~~ 290 (713)
T TIGR03030 212 NVHAKAG-NINNALKHTDGELILIFDADHVPTRDFLQRTVGWFVEDPKLFLVQTPHFFVSPDPIERNLGTFRRMPNENEL 290 (713)
T ss_pred CCCCChH-HHHHHHHhcCCCEEEEECCCCCcChhHHHHHHHHHHhCCCEEEEeCCeeccCCCHHhhhhHHHHHhhhHHHH
Confidence 3345543 35677777789999999999999999888887664333332 12211 111111 1100000001000 0
Q ss_pred cC----CCC--ccCcCccCCeeeecHHHHHHHHHhcccCCCCCcChHHHHHHHccCCCe--EeeCCCc
Q 019355 269 FG----DKK--LYFRHASGEMYVISRALAKFISINRSILRTYAHDDVSAGSWFLGLDVK--YLNEGKF 328 (342)
Q Consensus 269 ~~----~~~--~Yp~y~~G~gYilS~dla~~I~~~~~~l~~~~~EDV~lG~~l~~l~V~--~i~~~~f 328 (342)
+| ++. .-..++.|.+.++.+++...+---.. ..-.||..++.-+...|.+ ..++...
T Consensus 291 f~~~i~~g~~~~~~~~~~Gs~~~iRR~al~~iGGf~~---~~vtED~~l~~rL~~~G~~~~y~~~~~~ 355 (713)
T TIGR03030 291 FYGLIQDGNDFWNAAFFCGSAAVLRREALDEIGGIAG---ETVTEDAETALKLHRRGWNSAYLDRPLI 355 (713)
T ss_pred HHHHHHHHHhhhCCeeecCceeEEEHHHHHHcCCCCC---CCcCcHHHHHHHHHHcCCeEEEeccccc
Confidence 00 000 01245679999999999987642111 1237999999988877655 4444433
No 54
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=64.37 E-value=67 Score=25.11 Aligned_cols=83 Identities=18% Similarity=0.067 Sum_probs=49.3
Q ss_pred HHHHHHhcCCccEEEEEcCeEEeeHHHHHHHHhhcCCCCc-eeEEecccCcccccCCCccccCCccccCCCCccCcCccC
Q 019355 203 FFAYAVDKWDAEYYAKVNDDVYVNIDSLGATLATHLDKPR-VYIGCMKSGDVFSEPGHKWYEPDWWKFGDKKLYFRHASG 281 (342)
Q Consensus 203 ~~~wa~~~~~a~f~lKvDDDv~Vn~~~L~~~L~~~~~~~~-~yiG~~~~g~v~rd~~~kwy~p~~w~~~~~~~Yp~y~~G 281 (342)
.+..+.+..+.+|++-+|+|..+.++.+...+......+. ..+++.
T Consensus 68 ~~~~~~~~~~~d~v~~~d~D~~~~~~~~~~~~~~~~~~~~~~~v~~~--------------------------------- 114 (156)
T cd00761 68 ARNAGLKAARGEYILFLDADDLLLPDWLERLVAELLADPEADAVGGP--------------------------------- 114 (156)
T ss_pred HHHHHHHHhcCCEEEEECCCCccCccHHHHHHHHHhcCCCceEEecc---------------------------------
Confidence 3444444447999999999999999888886443322221 111100
Q ss_pred CeeeecHHHHHHHHHhcccCCCCCcChHHHHHHHccCC
Q 019355 282 EMYVISRALAKFISINRSILRTYAHDDVSAGSWFLGLD 319 (342)
Q Consensus 282 ~gYilS~dla~~I~~~~~~l~~~~~EDV~lG~~l~~l~ 319 (342)
++++++++..+.+......... ..||..++..+...+
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~-~~ed~~~~~~~~~~g 151 (156)
T cd00761 115 GNLLFRRELLEEIGGFDEALLS-GEEDDDFLLRLLRGG 151 (156)
T ss_pred chheeeHHHHHHhCCcchHhcC-CcchHHHHHHHHhhc
Confidence 6677888887776543222221 267777766655443
No 55
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=63.16 E-value=58 Score=27.49 Aligned_cols=132 Identities=8% Similarity=-0.058 Sum_probs=68.1
Q ss_pred eEEEEEeecCCCCCCcchHhhHHhhhhCCCceeeCCCCCCCCCchHHHHHHHHHHHhcCCccEEEEEcCeEEeeHHHHHH
Q 019355 153 IITRFVIGRSANRGDSLDQDIDSENKQTNDFFILDHHVEAPKEFPNKAKLFFAYAVDKWDAEYYAKVNDDVYVNIDSLGA 232 (342)
Q Consensus 153 i~v~FviG~s~~~~~~~~~~I~~E~~~~~DIl~l~d~~D~y~nLt~Kt~~~~~wa~~~~~a~f~lKvDDDv~Vn~~~L~~ 232 (342)
..+..+-..+.+ .....++....++..+.++. ..++. . | -..+..+.+....+|++..|+|..+.++.|..
T Consensus 29 ~eiivvd~~s~d---~~~~~~~~~~~~~~~~~~~~-~~~n~---G-~-~~a~n~g~~~a~gd~i~~lD~D~~~~~~~l~~ 99 (185)
T cd04179 29 YEIIVVDDGSTD---GTAEIARELAARVPRVRVIR-LSRNF---G-K-GAAVRAGFKAARGDIVVTMDADLQHPPEDIPK 99 (185)
T ss_pred EEEEEEcCCCCC---ChHHHHHHHHHhCCCeEEEE-ccCCC---C-c-cHHHHHHHHHhcCCEEEEEeCCCCCCHHHHHH
Confidence 445555544432 33444444445555543331 23322 1 1 13444555544569999999999999999988
Q ss_pred HHhh-cCCCCceeEEecccCcccccCCCccccCC-----cccc-CCCCccCcCccCCeeeecHHHHHHHH
Q 019355 233 TLAT-HLDKPRVYIGCMKSGDVFSEPGHKWYEPD-----WWKF-GDKKLYFRHASGEMYVISRALAKFIS 295 (342)
Q Consensus 233 ~L~~-~~~~~~~yiG~~~~g~v~rd~~~kwy~p~-----~w~~-~~~~~Yp~y~~G~gYilS~dla~~I~ 295 (342)
++.. ......+.+|.......- ....++... .+.. .-...-.....|+.++++++++..+.
T Consensus 100 l~~~~~~~~~~~v~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~ 167 (185)
T cd04179 100 LLEKLLEGGADVVIGSRFVRGGG--AGMPLLRRLGSRLFNFLIRLLLGVRISDTQSGFRLFRREVLEALL 167 (185)
T ss_pred HHHHHhccCCcEEEEEeecCCCc--ccchHHHHHHHHHHHHHHHHHcCCCCcCCCCceeeeHHHHHHHHH
Confidence 8886 344455666653211000 001111000 0000 00112223356788899999999885
No 56
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=54.87 E-value=1.5e+02 Score=26.08 Aligned_cols=43 Identities=19% Similarity=0.348 Sum_probs=30.8
Q ss_pred HHHHhcCCccEEEEEcCeEEeeHHHHHHHHhhcCCCCceeEEe
Q 019355 205 AYAVDKWDAEYYAKVNDDVYVNIDSLGATLATHLDKPRVYIGC 247 (342)
Q Consensus 205 ~wa~~~~~a~f~lKvDDDv~Vn~~~L~~~L~~~~~~~~~yiG~ 247 (342)
..+.+.-..+|++.+|+|..+.++.|...+......+...+|+
T Consensus 77 N~g~~~a~gd~i~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~~ 119 (219)
T cd06913 77 NQAIAQSSGRYLCFLDSDDVMMPQRIRLQYEAALQHPNSIIGC 119 (219)
T ss_pred HHHHHhcCCCEEEEECCCccCChhHHHHHHHHHHhCCCcEEEE
Confidence 4445555789999999999999988877665543334445565
No 57
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=51.98 E-value=1.3e+02 Score=26.38 Aligned_cols=90 Identities=9% Similarity=-0.035 Sum_probs=51.9
Q ss_pred CCeEEEEEeecCCCCCCcchHhhHHhhhhCCCceeeCCCCCCCCCchHHHHHHHHHHHhcCCccEEEEEcCeEEeeHHHH
Q 019355 151 KGIITRFVIGRSANRGDSLDQDIDSENKQTNDFFILDHHVEAPKEFPNKAKLFFAYAVDKWDAEYYAKVNDDVYVNIDSL 230 (342)
Q Consensus 151 ~~i~v~FviG~s~~~~~~~~~~I~~E~~~~~DIl~l~d~~D~y~nLt~Kt~~~~~wa~~~~~a~f~lKvDDDv~Vn~~~L 230 (342)
..+.++.|-+.|.+ .....+++..++++..+++-.... |.- |. ..+..+.+....+|++.+|+|..+.++.+
T Consensus 29 ~~~eiivvdd~S~D---~t~~~~~~~~~~~~~~i~~i~~~~---n~G-~~-~a~~~g~~~a~gd~i~~ld~D~~~~~~~l 100 (211)
T cd04188 29 FSYEIIVVDDGSKD---GTAEVARKLARKNPALIRVLTLPK---NRG-KG-GAVRAGMLAARGDYILFADADLATPFEEL 100 (211)
T ss_pred CCEEEEEEeCCCCC---chHHHHHHHHHhCCCcEEEEEccc---CCC-cH-HHHHHHHHHhcCCEEEEEeCCCCCCHHHH
Confidence 34567777666543 333444544555665422101222 211 21 23333444445799999999999999999
Q ss_pred HHHHhh-cCCCCceeEEec
Q 019355 231 GATLAT-HLDKPRVYIGCM 248 (342)
Q Consensus 231 ~~~L~~-~~~~~~~yiG~~ 248 (342)
..++.. ......+.+|..
T Consensus 101 ~~l~~~~~~~~~~~v~g~r 119 (211)
T cd04188 101 EKLEEALKTSGYDIAIGSR 119 (211)
T ss_pred HHHHHHHhccCCcEEEEEe
Confidence 988886 334455677763
No 58
>PRK14716 bacteriophage N4 adsorption protein B; Provisional
Probab=50.39 E-value=3e+02 Score=28.81 Aligned_cols=108 Identities=10% Similarity=0.012 Sum_probs=59.5
Q ss_pred CccEEEEEcCeEEeeHHHHHHHHhhcCCCCceeEEecccCcccccCCCccccCCccc-cCC----------CCccCcCcc
Q 019355 212 DAEYYAKVNDDVYVNIDSLGATLATHLDKPRVYIGCMKSGDVFSEPGHKWYEPDWWK-FGD----------KKLYFRHAS 280 (342)
Q Consensus 212 ~a~f~lKvDDDv~Vn~~~L~~~L~~~~~~~~~yiG~~~~g~v~rd~~~kwy~p~~w~-~~~----------~~~Yp~y~~ 280 (342)
++++++..|-|..+.++.|..+ ....+.+.+.-.-+... ..+...|-...++. |++ .-.-+-.+.
T Consensus 158 ~~d~vvi~DAD~~v~Pd~Lr~~-~~~~~~~~~VQ~pv~~~---~~~~~~~~ag~y~~ef~~~~~~~l~~r~~LG~~~~~~ 233 (504)
T PRK14716 158 RFAIIVLHDAEDVIHPLELRLY-NYLLPRHDFVQLPVFSL---PRDWGEWVAGTYMDEFAESHLKDLPVREALGGLIPSA 233 (504)
T ss_pred CcCEEEEEcCCCCcCccHHHHH-HhhcCCCCEEecceecc---CCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCccccC
Confidence 4699999999999999998754 33333332211001110 01111110000000 000 001233478
Q ss_pred CCeeeecHHHHHHHHHhcc---cCCCCCcChHHHHHHHccCCCeEe
Q 019355 281 GEMYVISRALAKFISINRS---ILRTYAHDDVSAGSWFLGLDVKYL 323 (342)
Q Consensus 281 G~gYilS~dla~~I~~~~~---~l~~~~~EDV~lG~~l~~l~V~~i 323 (342)
|.++++++++++.+..... .-...--||.-+|.-+...|.+.+
T Consensus 234 Gtg~afRR~aLe~l~~~~GG~~fd~~sLTED~dLglRL~~~G~rv~ 279 (504)
T PRK14716 234 GVGTAFSRRALERLAAERGGQPFDSDSLTEDYDIGLRLKRAGFRQI 279 (504)
T ss_pred CeeEEeEHHHHHHHHhhcCCCCCCCCCcchHHHHHHHHHHCCCEEE
Confidence 9999999999999854221 222345899999988876665543
No 59
>COG4092 Predicted glycosyltransferase involved in capsule biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=48.74 E-value=63 Score=31.39 Aligned_cols=162 Identities=15% Similarity=0.122 Sum_probs=89.6
Q ss_pred cCCCeEEEEEeecCCCCCCcchHhhHHhhhhCCCceeeCCCC--CCCCCchHHHHHHHHHHHhcCCccEEEEEcCeEEee
Q 019355 149 NEKGIITRFVIGRSANRGDSLDQDIDSENKQTNDFFILDHHV--EAPKEFPNKAKLFFAYAVDKWDAEYYAKVNDDVYVN 226 (342)
Q Consensus 149 ~~~~i~v~FviG~s~~~~~~~~~~I~~E~~~~~DIl~l~d~~--D~y~nLt~Kt~~~~~wa~~~~~a~f~lKvDDDv~Vn 226 (342)
...++.+.|+-|.+ ..++.|..=.....-++.|. +. +.+..-+.--..+..|+.+.++..+++..|-|+|..
T Consensus 35 s~~~~~vi~~~~~~-----~~d~~i~~~i~~~~~~~yl~-~~s~~~F~s~~~c~n~ga~Ysh~~~~Sn~vlFlDvDc~~S 108 (346)
T COG4092 35 SSDITMVICLRAHE-----VMDRLIRSYIDPMPRVLYLD-FGSPEPFASETICANNGADYSHEKCESNLVLFLDVDCFGS 108 (346)
T ss_pred ccccEEEEEEecch-----hHHHHHHHHhccccceEEEe-cCCCccccchhhhhhccchhhhccccccEEEEEecccccc
Confidence 35666777777664 45677776666666666663 32 233333444556778888888999999999999999
Q ss_pred HHHHHHHHhhcC-------C-CCceeEE-ecc--cCcccccCCC-cc----ccCCccccCCCCccCcCccCCeeeecHHH
Q 019355 227 IDSLGATLATHL-------D-KPRVYIG-CMK--SGDVFSEPGH-KW----YEPDWWKFGDKKLYFRHASGEMYVISRAL 290 (342)
Q Consensus 227 ~~~L~~~L~~~~-------~-~~~~yiG-~~~--~g~v~rd~~~-kw----y~p~~w~~~~~~~Yp~y~~G~gYilS~dl 290 (342)
.++..++|.-.. . .+-+|=- ... .+.+.-+-.+ +| .++.--.+..+..|+.=..-+..++.++.
T Consensus 109 ~dnF~k~l~~~~ikk~~tnI~a~~vlPV~~LNk~~~~v~f~~~d~f~d~~i~es~~~~~~~~~~ff~~~~T~~~liN~~~ 188 (346)
T COG4092 109 SDNFAKMLSIATIKKMRTNIDAPLVLPVYHLNKADTQVFFDVEDMFLDAMIFESPLAEFRKEDNFFIAPYTNIFLINRRM 188 (346)
T ss_pred HHHHHHHHHHHHHHHHHhccCcceeeeeeecchhhhhHHHHHHHHhhhhHhhhhHHHHhCcccccccccccceEEEehhH
Confidence 999999983211 1 1111100 011 1111111111 11 01100012223333332334567888887
Q ss_pred HHHHHHhcccCCCCCcChHH-HHHHHc
Q 019355 291 AKFISINRSILRTYAHDDVS-AGSWFL 316 (342)
Q Consensus 291 a~~I~~~~~~l~~~~~EDV~-lG~~l~ 316 (342)
-....-......-+.-||.- +.+...
T Consensus 189 F~~tgGydE~F~GhG~EDfe~~~R~~l 215 (346)
T COG4092 189 FSLTGGYDERFRGHGSEDFEFLTRLGL 215 (346)
T ss_pred HHHhcCCccccccCCchhHHHHHHHHH
Confidence 76666666667778888884 344443
No 60
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=47.16 E-value=2.5e+02 Score=26.33 Aligned_cols=127 Identities=12% Similarity=0.048 Sum_probs=72.0
Q ss_pred CCchHHHHHHHHHHHhc-CCccEEEEEcCeEEeeHHHHHHHHhhcCCCCceeEEecccCcccccCCCccc----------
Q 019355 194 KEFPNKAKLFFAYAVDK-WDAEYYAKVNDDVYVNIDSLGATLATHLDKPRVYIGCMKSGDVFSEPGHKWY---------- 262 (342)
Q Consensus 194 ~nLt~Kt~~~~~wa~~~-~~a~f~lKvDDDv~Vn~~~L~~~L~~~~~~~~~yiG~~~~g~v~rd~~~kwy---------- 262 (342)
.|.-.|+-..-...... .+.+|++-.|-|+.+.++.|..++......++ +|-+.......+..+-|.
T Consensus 76 ~~~g~Kag~l~~~~~~~~~~~~~i~~~DaD~~~~p~~l~~~v~~~~~~~~--vg~vq~~~~~~n~~~~~~~~~~~~~~~~ 153 (254)
T cd04191 76 ENTGRKAGNIADFCRRWGSRYDYMVVLDADSLMSGDTIVRLVRRMEANPR--AGIIQTAPKLIGAETLFARLQQFANRLY 153 (254)
T ss_pred CCCCccHHHHHHHHHHhCCCCCEEEEEeCCCCCCHHHHHHHHHHHHhCCC--EEEEeCCceeECCCCHHHHHHHHHHHHH
Confidence 34455665544444332 46899999999999999999999876532333 233321111111111110
Q ss_pred cC------CccccCCCCccCcCccCCeeeecHHHHHHHHHh-----cccC-CCCCcChHHHHHHHccCCCeEeeCCC
Q 019355 263 EP------DWWKFGDKKLYFRHASGEMYVISRALAKFISIN-----RSIL-RTYAHDDVSAGSWFLGLDVKYLNEGK 327 (342)
Q Consensus 263 ~p------~~w~~~~~~~Yp~y~~G~gYilS~dla~~I~~~-----~~~l-~~~~~EDV~lG~~l~~l~V~~i~~~~ 327 (342)
.+ .+|. ..-.+|.|...++.++++..+..- ..-+ ...-.||..+|..+...|-+-+-.+.
T Consensus 154 ~~~~~~~~~~~~-----~~~~~~~G~~~~~Rr~al~~~~~~~~i~g~g~~~~~~l~eD~~l~~~~~~~G~ri~~~~~ 225 (254)
T cd04191 154 GPVFGRGLAAWQ-----GGEGNYWGHNAIIRVAAFMEHCALPVLPGRPPFGGHILSHDFVEAALMRRAGWEVRLAPD 225 (254)
T ss_pred HHHHHHHHHHhc-----CCccCccceEEEEEHHHHHHhcCCccccCCCCCCCCeecHHHHHHHHHHHcCCEEEEccC
Confidence 00 0011 112356799999999988775321 1111 22458999999998877755544443
No 61
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=46.68 E-value=2.2e+02 Score=25.68 Aligned_cols=157 Identities=8% Similarity=0.026 Sum_probs=77.4
Q ss_pred CeEEEEEeecCCCCCCcchHhhHHhhhhCCC--ceeeCCCCCCCCCchHHHHHHHHHHHhcCCccEEEEEcCeEEeeHHH
Q 019355 152 GIITRFVIGRSANRGDSLDQDIDSENKQTND--FFILDHHVEAPKEFPNKAKLFFAYAVDKWDAEYYAKVNDDVYVNIDS 229 (342)
Q Consensus 152 ~i~v~FviG~s~~~~~~~~~~I~~E~~~~~D--Il~l~d~~D~y~nLt~Kt~~~~~wa~~~~~a~f~lKvDDDv~Vn~~~ 229 (342)
.+.+++|-..|.+ ...+.+++-.++|++ +..+. ... |... . ..+..+.+.-..+|++.+|+|..++++.
T Consensus 40 ~~eiivvDdgS~D---~t~~i~~~~~~~~~~~~v~~~~-~~~---n~G~-~-~a~n~g~~~a~g~~i~~lD~D~~~~~~~ 110 (243)
T PLN02726 40 DFEIIVVDDGSPD---GTQDVVKQLQKVYGEDRILLRP-RPG---KLGL-G-TAYIHGLKHASGDFVVIMDADLSHHPKY 110 (243)
T ss_pred CeEEEEEeCCCCC---CHHHHHHHHHHhcCCCcEEEEe-cCC---CCCH-H-HHHHHHHHHcCCCEEEEEcCCCCCCHHH
Confidence 5667777665543 233333333344543 22221 111 2221 1 2444555545689999999999999999
Q ss_pred HHHHHhhcC-CCCceeEEecc-c-CcccccCCCccc---cCCc--c--ccCCCCccCcCccCCeeeecHHHHHHHHHhcc
Q 019355 230 LGATLATHL-DKPRVYIGCMK-S-GDVFSEPGHKWY---EPDW--W--KFGDKKLYFRHASGEMYVISRALAKFISINRS 299 (342)
Q Consensus 230 L~~~L~~~~-~~~~~yiG~~~-~-g~v~rd~~~kwy---~p~~--w--~~~~~~~Yp~y~~G~gYilS~dla~~I~~~~~ 299 (342)
|..++.... ....+.+|... . +.. ....|. .+.. + ....+. .-...+|++.++++++++.+.....
T Consensus 111 l~~l~~~~~~~~~~~v~g~r~~~~~~~---~~~~~~r~~~~~~~~~~~~~~~~~-~~~d~~g~~~~~rr~~~~~i~~~~~ 186 (243)
T PLN02726 111 LPSFIKKQRETGADIVTGTRYVKGGGV---HGWDLRRKLTSRGANVLAQTLLWP-GVSDLTGSFRLYKRSALEDLVSSVV 186 (243)
T ss_pred HHHHHHHHHhcCCcEEEEccccCCCCc---CCccHHHHHHHHHHHHHHHHHhCC-CCCcCCCcccceeHHHHHHHHhhcc
Confidence 888877543 23455666532 1 110 000111 1000 0 000011 1123578888999999998864322
Q ss_pred cCCCCCcChHHHHHHHc--cCCCeEe
Q 019355 300 ILRTYAHDDVSAGSWFL--GLDVKYL 323 (342)
Q Consensus 300 ~l~~~~~EDV~lG~~l~--~l~V~~i 323 (342)
. ..| ..|+-+...+. +..+..+
T Consensus 187 ~-~~~-~~~~el~~~~~~~g~~i~~v 210 (243)
T PLN02726 187 S-KGY-VFQMEIIVRASRKGYRIEEV 210 (243)
T ss_pred C-CCc-EEehHHHHHHHHcCCcEEEe
Confidence 2 122 23454544443 4444443
No 62
>PLN03181 glycosyltransferase; Provisional
Probab=36.62 E-value=1.8e+02 Score=29.90 Aligned_cols=93 Identities=15% Similarity=0.113 Sum_probs=54.4
Q ss_pred HHHHHHHHhcCcchhhccccCCCeEEEEEeecCCC-----CCCc-chHhhHH---hhhhCCCceeeCC-CCC-CCCCchH
Q 019355 130 RDAIRKAWMGTGAALKKRENEKGIITRFVIGRSAN-----RGDS-LDQDIDS---ENKQTNDFFILDH-HVE-APKEFPN 198 (342)
Q Consensus 130 R~aIR~TW~~~~~~lk~le~~~~i~v~FviG~s~~-----~~~~-~~~~I~~---E~~~~~DIl~l~d-~~D-~y~nLt~ 198 (342)
=|.-|+.|...-.. +....+=.|+-|.|..+. .++. +.+.+++ =+++||=-+.+.+ ..+ .+.....
T Consensus 108 wD~kR~~Wl~~~p~---~~~~~~prVViVT~Sdp~~C~~~~gD~~LlriikNR~dYArrHGY~lf~~~a~Ld~~~p~~Wa 184 (453)
T PLN03181 108 WDEKRAEWLKLHPS---FAPGAEERVVMVTGSQPTPCKNPIGDHLLLRFFKNKVDYCRIHGYDIFYNNALLHPKMNSYWA 184 (453)
T ss_pred HHHHHHHHHHhCCC---CCCCCCCCEEEEECCCCCCCCCcccHHHHHHHHHHHHHHHHHhCCcEEEeccccCccCchhhh
Confidence 35556678875432 111233345556665422 1222 2333322 1456664433222 222 5667788
Q ss_pred HHHHHHHHHHhcCCccEEEEEcCeEEe
Q 019355 199 KAKLFFAYAVDKWDAEYYAKVNDDVYV 225 (342)
Q Consensus 199 Kt~~~~~wa~~~~~a~f~lKvDDDv~V 225 (342)
|..++-.-+.++++++|+.-+|.|+++
T Consensus 185 KipalRaAM~a~PeAEWfWWLDsDALI 211 (453)
T PLN03181 185 KLPVVRAAMLAHPEAEWIWWVDSDAVF 211 (453)
T ss_pred HHHHHHHHHHHCCCceEEEEecCCcee
Confidence 988888888889999999999999887
No 63
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=34.83 E-value=2.9e+02 Score=23.54 Aligned_cols=88 Identities=15% Similarity=0.090 Sum_probs=51.9
Q ss_pred HHHHHHHh-cCCccEEEEEcCeEEeeHHHHHHHHhhcCCCCceeEEecccCcccccCCCccccC---CccccC----C--
Q 019355 202 LFFAYAVD-KWDAEYYAKVNDDVYVNIDSLGATLATHLDKPRVYIGCMKSGDVFSEPGHKWYEP---DWWKFG----D-- 271 (342)
Q Consensus 202 ~~~~wa~~-~~~a~f~lKvDDDv~Vn~~~L~~~L~~~~~~~~~yiG~~~~g~v~rd~~~kwy~p---~~w~~~----~-- 271 (342)
.+++++.. ..+.+|++.+|.|+.+.++.|..++........+..|+... +++...|.-. .++.++ .
T Consensus 70 ~g~~~a~~~~~~~d~v~~~DaD~~~~p~~l~~l~~~~~~~~~~v~g~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (183)
T cd06438 70 FGFRHLLNLADDPDAVVVFDADNLVDPNALEELNARFAAGARVVQAYYNS----KNPDDSWITRLYAFAFLVFNRLRPLG 145 (183)
T ss_pred HHHHHHHhcCCCCCEEEEEcCCCCCChhHHHHHHHHHhhCCCeeEEEEee----eCCccCHHHHHHHHHHHHHHHHHHHH
Confidence 34555432 24689999999999999988888877765445565665431 1112223110 000000 0
Q ss_pred --CCccCcCccCCeeeecHHHHHH
Q 019355 272 --KKLYFRHASGEMYVISRALAKF 293 (342)
Q Consensus 272 --~~~Yp~y~~G~gYilS~dla~~ 293 (342)
.-.-+.++.|+++++++++++.
T Consensus 146 ~~~~~~~~~~~G~~~~~rr~~l~~ 169 (183)
T cd06438 146 RSNLGLSCQLGGTGMCFPWAVLRQ 169 (183)
T ss_pred HHHcCCCeeecCchhhhHHHHHHh
Confidence 0122345789999999999988
No 64
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=34.82 E-value=3.8e+02 Score=29.31 Aligned_cols=200 Identities=12% Similarity=0.098 Sum_probs=101.7
Q ss_pred CCCceEEEEEeCCCCCHH-HHHHHHHHHhcCcchhhccccCCCeEEEEEeecCCCCCCcch---HhhHHhhhhCC---Cc
Q 019355 111 KKRPLVVIGILTRFGRKN-NRDAIRKAWMGTGAALKKRENEKGIITRFVIGRSANRGDSLD---QDIDSENKQTN---DF 183 (342)
Q Consensus 111 ~~~~~llI~V~S~~~~~~-rR~aIR~TW~~~~~~lk~le~~~~i~v~FviG~s~~~~~~~~---~~I~~E~~~~~---DI 183 (342)
.....+.|.|.+.-.... -+..|+.++.+-... .....+.+ |++..+.+++ ... +++.+=.++++ .|
T Consensus 121 ~~~~~VaVliP~yNEd~~~v~~~L~a~~~Sl~~~----~~~~~~e~-~vLdD~~d~~-~~~~e~~~~~~L~~~~~~~~~i 194 (691)
T PRK05454 121 PPEARTAILMPIYNEDPARVFAGLRAMYESLAAT----GHGAHFDF-FILSDTRDPD-IAAAEEAAWLELRAELGGEGRI 194 (691)
T ss_pred CCCCceEEEEeCCCCChHHHHHHHHHHHHHHHhc----CCCCCEEE-EEEECCCChh-HHHHHHHHHHHHHHhcCCCCcE
Confidence 344566666666655443 246777777643210 01234455 8887665431 111 11112223343 33
Q ss_pred eeeCCCCCCCCCchHHHHHHHHHHHh-cCCccEEEEEcCeEEeeHHHHHHHHhhcCCCCceeEEecccCcccccCCCcc-
Q 019355 184 FILDHHVEAPKEFPNKAKLFFAYAVD-KWDAEYYAKVNDDVYVNIDSLGATLATHLDKPRVYIGCMKSGDVFSEPGHKW- 261 (342)
Q Consensus 184 l~l~d~~D~y~nLt~Kt~~~~~wa~~-~~~a~f~lKvDDDv~Vn~~~L~~~L~~~~~~~~~yiG~~~~g~v~rd~~~kw- 261 (342)
... ..-.|.-.|.-..-.+... ..+++|++-.|-|+.+..+.|.+++......|+ +|-+...+...+..+-+
T Consensus 195 ~yr----~R~~n~~~KaGNl~~~~~~~~~~~eyivvLDADs~m~~d~L~~lv~~m~~dP~--vGlVQt~~~~~n~~slfa 268 (691)
T PRK05454 195 FYR----RRRRNVGRKAGNIADFCRRWGGAYDYMVVLDADSLMSGDTLVRLVRLMEANPR--AGLIQTLPVAVGADTLFA 268 (691)
T ss_pred EEE----ECCcCCCccHHHHHHHHHhcCCCcCEEEEEcCCCCCCHHHHHHHHHHHhhCcC--EEEEeCCccCcCCCCHHH
Confidence 322 2223445566655555443 246899999999999999999998875432333 35443222111111111
Q ss_pred ---------ccC------CccccCCCCccCcCccCCeeeecHHHHHHHHH-----hcccC-CCCCcChHHHHHHHccCCC
Q 019355 262 ---------YEP------DWWKFGDKKLYFRHASGEMYVISRALAKFISI-----NRSIL-RTYAHDDVSAGSWFLGLDV 320 (342)
Q Consensus 262 ---------y~p------~~w~~~~~~~Yp~y~~G~gYilS~dla~~I~~-----~~~~l-~~~~~EDV~lG~~l~~l~V 320 (342)
|-+ .+|..+. -...|...|+.+++...+.- ...-+ ..+--||...|..++..|-
T Consensus 269 R~qqf~~~~y~~~~~~G~~~w~~~~-----g~f~G~naIiR~~af~~~~glp~L~g~~p~~~~~LseD~~~a~~l~~~Gy 343 (691)
T PRK05454 269 RLQQFATRVYGPLFAAGLAWWQGGE-----GNYWGHNAIIRVKAFAEHCGLPPLPGRGPFGGHILSHDFVEAALMRRAGW 343 (691)
T ss_pred HHHHHHHHHHHHHHHhhhhhhccCc-----cccccceEEEEHHHHHHhcCCccccccCCCCCCcccHHHHHHHHHHHCCC
Confidence 100 0111111 11246667888887665431 11111 2345789999999987775
Q ss_pred eEeeCCC
Q 019355 321 KYLNEGK 327 (342)
Q Consensus 321 ~~i~~~~ 327 (342)
+.+-.+.
T Consensus 344 rV~~~pd 350 (691)
T PRK05454 344 GVWLAPD 350 (691)
T ss_pred EEEEcCc
Confidence 5443333
No 65
>PHA01631 hypothetical protein
Probab=31.43 E-value=1.2e+02 Score=27.20 Aligned_cols=93 Identities=13% Similarity=0.146 Sum_probs=53.5
Q ss_pred hhCCCceeeCCCCCCCCCchHHHHHHHHHHHh---cCCccEEEEEcCeEEeeHHHHHHHHhhcCCCCceeEEecccCccc
Q 019355 178 KQTNDFFILDHHVEAPKEFPNKAKLFFAYAVD---KWDAEYYAKVNDDVYVNIDSLGATLATHLDKPRVYIGCMKSGDVF 254 (342)
Q Consensus 178 ~~~~DIl~l~d~~D~y~nLt~Kt~~~~~wa~~---~~~a~f~lKvDDDv~Vn~~~L~~~L~~~~~~~~~yiG~~~~g~v~ 254 (342)
.-+.+|+....-+|+ .-.....++..+++ +-+-|.++.+|.|++|+.-. .. .+.+.++.=|...
T Consensus 37 ~~~~~Ii~~~t~~e~---Rr~RIAk~Ll~Iln~~s~i~DDi~~iIDSDV~ipn~~--~~----~~~~~v~t~CiPA---- 103 (176)
T PHA01631 37 KYQEKIIWIMTNTEI---RWLRIAKQLLTIVNFAKNIEDDIIAIIDSDLIIPNLR--EI----IPNERVFTPCYWL---- 103 (176)
T ss_pred ccCCceEEecccchh---HHHHHHHHHHHHHHhhccCCccEEEEeccceEecCcc--cc----ccCCCccceeeee----
Confidence 336667764322222 23333344445544 34678888999999997532 11 1233344444321
Q ss_pred ccCCCccccCCccccCCCCccCcCccCCeeeecHHHHHHHHH
Q 019355 255 SEPGHKWYEPDWWKFGDKKLYFRHASGEMYVISRALAKFISI 296 (342)
Q Consensus 255 rd~~~kwy~p~~w~~~~~~~Yp~y~~G~gYilS~dla~~I~~ 296 (342)
+ .| +.+.+-+||.|.-+++.+..+..+..
T Consensus 104 ~---~k----------p~~~v~~FC~sTNf~~pr~~l~~l~~ 132 (176)
T PHA01631 104 Y---YD----------WANEIRPFCSGTNYIFRKSLLPYLEY 132 (176)
T ss_pred e---ec----------CCCcEEEEEccccEEeeHHHhHHHHH
Confidence 0 01 12355689999999999999988765
No 66
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=29.61 E-value=1.5e+02 Score=33.15 Aligned_cols=123 Identities=15% Similarity=0.011 Sum_probs=68.8
Q ss_pred chHHHHHHHHHHHhcCCccEEEEEcCeEEeeHHHHHHHHhhcCCCCce-eEEec----ccCcccccCCCcc-ccC-Cccc
Q 019355 196 FPNKAKLFFAYAVDKWDAEYYAKVNDDVYVNIDSLGATLATHLDKPRV-YIGCM----KSGDVFSEPGHKW-YEP-DWWK 268 (342)
Q Consensus 196 Lt~Kt~~~~~wa~~~~~a~f~lKvDDDv~Vn~~~L~~~L~~~~~~~~~-yiG~~----~~g~v~rd~~~kw-y~p-~~w~ 268 (342)
...|.- .++.+.++.+.+|++..|.|..+..+-|..++......+++ .++.. ..++..++- +.+ ..+ +.-.
T Consensus 324 ~~gKAG-nLN~aL~~a~GEyIavlDAD~ip~pdfL~~~V~~f~~dP~VglVQtp~~f~n~dp~~rnl-~~~~~~~~e~~~ 401 (852)
T PRK11498 324 EHAKAG-NINNALKYAKGEFVAIFDCDHVPTRSFLQMTMGWFLKDKKLAMMQTPHHFFSPDPFERNL-GRFRKTPNEGTL 401 (852)
T ss_pred CcchHH-HHHHHHHhCCCCEEEEECCCCCCChHHHHHHHHHHHhCCCeEEEEcceeccCCchHHHhh-HHHhhcccchhH
Confidence 334443 56777777789999999999999998888876543222332 12211 011111110 000 000 0000
Q ss_pred cC----CCC--ccCcCccCCeeeecHHHHHHHHHhcccCCCCCcChHHHHHHHccCCCeEe
Q 019355 269 FG----DKK--LYFRHASGEMYVISRALAKFISINRSILRTYAHDDVSAGSWFLGLDVKYL 323 (342)
Q Consensus 269 ~~----~~~--~Yp~y~~G~gYilS~dla~~I~~~~~~l~~~~~EDV~lG~~l~~l~V~~i 323 (342)
+| ++. .-..++.|++.++.+++...+---... .-.||.-++.-+...|-+-+
T Consensus 402 fy~~iq~g~~~~~a~~~~Gs~aviRReaLeeVGGfd~~---titED~dlslRL~~~Gyrv~ 459 (852)
T PRK11498 402 FYGLVQDGNDMWDATFFCGSCAVIRRKPLDEIGGIAVE---TVTEDAHTSLRLHRRGYTSA 459 (852)
T ss_pred HHHHHHhHHHhhcccccccceeeeEHHHHHHhcCCCCC---ccCccHHHHHHHHHcCCEEE
Confidence 01 000 012457899999999999987422111 23799999999987775544
No 67
>PF03742 PetN: PetN ; InterPro: IPR005497 PetN is a small hydrophobic protein, crucial for cytochrome b6-f complex assembly and/or stability. It is found in bacteria and plants. Cytochrome b6-f complex is composed of 4 large subunits: cytochrome b6, subunit IV (17 kDa polypeptide, petD), cytochrome f and the Rieske protein, as well as 4 small subunits: petG, petL, petM and petN. The complex functions as a dimer. The cytochrome b6-f complex mediates electron transfer between photosystem II (PSII) and photosystem I (PSI) [].; GO: 0045158 electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity, 0017004 cytochrome complex assembly, 0009512 cytochrome b6f complex; PDB: 2ZT9_H 2D2C_H 2E76_H 1VF5_U 2E75_H 2E74_H.
Probab=27.04 E-value=83 Score=20.02 Aligned_cols=23 Identities=22% Similarity=0.177 Sum_probs=19.8
Q ss_pred chhhHHHHHHHHHHHHHHHHhcc
Q 019355 16 RTRISSLLLSMFATFASIYVAGR 38 (342)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~r 38 (342)
.+--|+.++.+|+|-+.+.|-||
T Consensus 4 v~lgWaal~~~ftfSlalVVWGR 26 (29)
T PF03742_consen 4 VSLGWAALMVVFTFSLALVVWGR 26 (29)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhHHHHHHHHhccceeEEEec
Confidence 34569999999999999999887
No 68
>PF06306 CgtA: Beta-1,4-N-acetylgalactosaminyltransferase (CgtA); InterPro: IPR010446 This family consists of several beta-1,4-N-acetylgalactosaminyltransferase proteins from Campylobacter jejuni [].
Probab=26.15 E-value=1.9e+02 Score=28.71 Aligned_cols=67 Identities=16% Similarity=0.193 Sum_probs=45.9
Q ss_pred hHhhHHhhhhCCCceeeC----CCCCCCCCchHHHHHHHHHHHhc-CCccEEEEEcCeEEeeHHHHHHHHhh
Q 019355 170 DQDIDSENKQTNDFFILD----HHVEAPKEFPNKAKLFFAYAVDK-WDAEYYAKVNDDVYVNIDSLGATLAT 236 (342)
Q Consensus 170 ~~~I~~E~~~~~DIl~l~----d~~D~y~nLt~Kt~~~~~wa~~~-~~a~f~lKvDDDv~Vn~~~L~~~L~~ 236 (342)
.+-|.+=.++|.+++-+. ....+-.....+...++.|+.+. +..+|++|+|.|-..+...|....-.
T Consensus 128 ~Eiil~fckkyP~fip~~Ypy~v~~~n~~~~~n~l~~YYNy~ls~ipk~~w~iKID~DhIy~~~KL~ksfY~ 199 (347)
T PF06306_consen 128 EEIILEFCKKYPSFIPIKYPYEVIIKNPKSEENSLYNYYNYVLSFIPKNEWAIKIDADHIYDTKKLYKSFYI 199 (347)
T ss_pred HHHHHHHHHhCcccccccCcchhhccCCchhhhhhhhhhhhhhcccccceEEEEeccceeecHHHHhhhhee
Confidence 344555567888877541 00111122334677788998884 67999999999999999999876543
No 69
>PF09258 Glyco_transf_64: Glycosyl transferase family 64 domain; InterPro: IPR015338 Members of this entry catalyse the transfer reaction of N-acetylglucosamine and N-acetylgalactosamine from the respective UDP-sugars to the non-reducing end of [glucuronic acid]beta 1-3[galactose]beta 1-O-naphthalenemethanol, an acceptor substrate analogue of the natural common linker of various glycosylaminoglycans. They are also required for the biosynthesis of heparan-sulphate []. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0031227 intrinsic to endoplasmic reticulum membrane; PDB: 1ON6_B 1OMZ_B 1OMX_B 1ON8_B.
Probab=25.89 E-value=73 Score=29.96 Aligned_cols=37 Identities=19% Similarity=0.328 Sum_probs=29.3
Q ss_pred CccEEEEEcCeEEeeHHHHHHHHhhcCCCCceeEEec
Q 019355 212 DAEYYAKVNDDVYVNIDSLGATLATHLDKPRVYIGCM 248 (342)
Q Consensus 212 ~a~f~lKvDDDv~Vn~~~L~~~L~~~~~~~~~yiG~~ 248 (342)
..+-++-+|||+.++.+.|.-.....+..|.-.+|..
T Consensus 75 ~T~AVl~~DDDv~~~~~~l~faF~~W~~~pdrlVGf~ 111 (247)
T PF09258_consen 75 ETDAVLSLDDDVMLSCDELEFAFQVWREFPDRLVGFP 111 (247)
T ss_dssp -SSEEEEEETTEEE-HHHHHHHHHHHCCSTTSEEES-
T ss_pred CcceEEEecCCcccCHHHHHHHHHHHHhChhheeCCc
Confidence 4678999999999999999888887776676778865
No 70
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=23.20 E-value=80 Score=23.48 Aligned_cols=16 Identities=19% Similarity=0.133 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHh
Q 019355 21 SLLLSMFATFASIYVA 36 (342)
Q Consensus 21 ~~~~~~~~~~~~~~~~ 36 (342)
.+++|++|+.+|.+++
T Consensus 42 ~~~~c~~S~~lG~~~~ 57 (60)
T PF06072_consen 42 VVALCVLSGGLGALVA 57 (60)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 3578899999998875
No 71
>smart00786 SHR3_chaperone ER membrane protein SH3. This family of proteins are membrane localised chaperones that are required for correct plasma membrane localisation of amino acid permeases (AAPs) PUBMED:15623581. Shr3 prevents AAPs proteins from aggregating and assists in their correct folding. In the absence of Shr3, AAPs are retained in the ER.
Probab=21.94 E-value=94 Score=28.55 Aligned_cols=31 Identities=23% Similarity=0.362 Sum_probs=24.5
Q ss_pred hHHHHHHHHHHHHHHHHhc------ccccchhhhHHH
Q 019355 19 ISSLLLSMFATFASIYVAG------RLWQDAQTRVRL 49 (342)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~ 49 (342)
...+++|-.||+.|++|++ =||+.+.+.+..
T Consensus 8 ~t~lIl~~tsF~lGvlf~~~pyD~~~Lw~~~~t~~~~ 44 (196)
T smart00786 8 GTALIIGSTSFFLGILFANFPYDYPLLWSPDPTPSAF 44 (196)
T ss_pred ccchhhhhHHHHHHHHHhcCccccchhcCCCCCHHHH
Confidence 3578999999999999998 469887654443
No 72
>PLN03182 xyloglucan 6-xylosyltransferase; Provisional
Probab=21.76 E-value=4.5e+02 Score=27.07 Aligned_cols=93 Identities=14% Similarity=0.146 Sum_probs=55.4
Q ss_pred HHHHHHHhcCcchhhccccCCCeEEEEEeecCCCC-----CC-cchHhhHH---hhhhCCCceeeCCC---CCCCCCchH
Q 019355 131 DAIRKAWMGTGAALKKRENEKGIITRFVIGRSANR-----GD-SLDQDIDS---ENKQTNDFFILDHH---VEAPKEFPN 198 (342)
Q Consensus 131 ~aIR~TW~~~~~~lk~le~~~~i~v~FviG~s~~~-----~~-~~~~~I~~---E~~~~~DIl~l~d~---~D~y~nLt~ 198 (342)
|.-|+.|........... ...-+|+-|.|..+.+ ++ -+++.+++ =+++||=-++. +. .+.......
T Consensus 106 d~~R~~wl~~~p~~~~~~-~g~prVviVT~sdp~~c~n~~gd~yLlks~kNK~dYAr~HGY~~fy-n~~~ld~~~p~~Wa 183 (429)
T PLN03182 106 DEQRRRWLRKNPGFPSFV-NGKPRVLLVTGSQPKPCENPVGDHYLLKSLKNKIDYCRLHGIEIFY-NMAHLDAEMAGFWA 183 (429)
T ss_pred HHHHHHHHHhCCCCCCcc-CCCCCEEEEeCCCCCcCCCcccHHHHHHHHHHHHHHHHHhCCEEEe-ehhhcCcCCCcchh
Confidence 455667777553211110 1234666777666542 22 22333322 14556644433 22 234456788
Q ss_pred HHHHHHHHHHhcCCccEEEEEcCeEEe
Q 019355 199 KAKLFFAYAVDKWDAEYYAKVNDDVYV 225 (342)
Q Consensus 199 Kt~~~~~wa~~~~~a~f~lKvDDDv~V 225 (342)
|.-++.+.+.++++++|+.=+|.|+++
T Consensus 184 KlpaLR~aM~~~PeaEWiWWLDsDALI 210 (429)
T PLN03182 184 KLPLLRKLMLAHPEVEWIWWMDSDALF 210 (429)
T ss_pred HHHHHHHHHHHCCCceEEEEecCCcee
Confidence 999888888889999999999999987
No 73
>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine. N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.
Probab=21.55 E-value=56 Score=28.50 Aligned_cols=77 Identities=10% Similarity=0.034 Sum_probs=43.4
Q ss_pred ccEEEEEcCeEEeeHHHHHHHHhhcCCCCce--eEEecccCcccccCCCcccc----CCcccc------CCCCccCcCcc
Q 019355 213 AEYYAKVNDDVYVNIDSLGATLATHLDKPRV--YIGCMKSGDVFSEPGHKWYE----PDWWKF------GDKKLYFRHAS 280 (342)
Q Consensus 213 a~f~lKvDDDv~Vn~~~L~~~L~~~~~~~~~--yiG~~~~g~v~rd~~~kwy~----p~~w~~------~~~~~Yp~y~~ 280 (342)
.+|++.+|.|..+.++.|........ .+.+ ..|.+. ..+...+|+. -+++.. .....-.-+++
T Consensus 90 ~d~v~~~DaD~~~~~~~l~~~~~~~~-~~~v~~v~~~~~----~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 164 (191)
T cd06436 90 RVIIAVIDADGRLDPNALEAVAPYFS-DPRVAGTQSRVR----MYNRHKNLLTILQDLEFFIIIAATQSLRALTGTVGLG 164 (191)
T ss_pred ccEEEEECCCCCcCHhHHHHHHHhhc-CCceEEEeeeEE----EecCCCCHHHHHHHHHHHHHHHHHHHHHHhcCcEEEC
Confidence 47999999999999999988554432 3332 222221 1223334421 111100 00000112358
Q ss_pred CCeeeecHHHHHHH
Q 019355 281 GEMYVISRALAKFI 294 (342)
Q Consensus 281 G~gYilS~dla~~I 294 (342)
|.+.++++++++.+
T Consensus 165 G~~~~~r~~~l~~v 178 (191)
T cd06436 165 GNGQFMRLSALDGL 178 (191)
T ss_pred CeeEEEeHHHHHHh
Confidence 99999999999888
No 74
>PF04666 Glyco_transf_54: N-Acetylglucosaminyltransferase-IV (GnT-IV) conserved region; InterPro: IPR006759 The complex-type of oligosaccharides are synthesised through elongation by glycosyltransferases after trimming of the precursor oligosaccharides transferred to proteins in the endoplasmic reticulum. N-Acetylglucosaminyltransferases (GnTs) take part in the formation of branches in the biosynthesis of complex-type sugar chains. In vertebrates, six GnTs, designated as GnT-I to -VI, which catalyse the transfer of GlcNAc to the core mannose residues of Asn-linked sugar chains, have been identified. GnT-IV (2.4.1.145 from EC) catalyzes the transfer of GlcNAc from UDP-GlcNAc to the GlcNAc1-2Man1-3 arm of core oligosaccharide [Gn2(22)core oligosaccharide] and forms a GlcNAc1-4(GlcNAc1-2)Man1-3 structure on the core oligosaccharide (Gn3(2,4,2)core oligosaccharide). In some members the conserved region occupies all but the very N-terminal, where there is a signal sequence on all members. For other members the conserved region does not occupy the entire protein but is still to the N-terminal end of the protein [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0016020 membrane
Probab=21.10 E-value=3.1e+02 Score=26.73 Aligned_cols=52 Identities=15% Similarity=0.196 Sum_probs=28.4
Q ss_pred CCCCceEEEEEeCCCCCHHHHHHHHHHHhcCcchhhccccCCCeEEEEEeecCCC
Q 019355 110 PKKRPLVVIGILTRFGRKNNRDAIRKAWMGTGAALKKRENEKGIITRFVIGRSAN 164 (342)
Q Consensus 110 ~~~~~~llI~V~S~~~~~~rR~aIR~TW~~~~~~lk~le~~~~i~v~FviG~s~~ 164 (342)
.++...+.|||.|-... +-..+.+|=++--..+..- +...+.|+-+++.++.
T Consensus 48 ~~~~~~L~IGIpTV~R~--~~sYL~~TL~SLl~~ls~~-Er~~i~IvVllAd~Dp 99 (297)
T PF04666_consen 48 PRTGKKLCIGIPTVKRE--KESYLLDTLASLLDGLSPE-ERKDIVIVVLLADTDP 99 (297)
T ss_pred CCCCCeEEEEecccccC--CCchHHHHHHHHHHhCCHH-HhcCeEEEEEecCCCh
Confidence 34556699999997643 2345666655543322222 2345555555555543
Done!