Query 019356
Match_columns 342
No_of_seqs 271 out of 1385
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 14:49:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019356.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019356hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3saf_A Exosome component 10; e 100.0 4.6E-34 1.6E-38 283.1 12.2 236 25-283 107-352 (428)
2 2hbj_A Exosome complex exonucl 100.0 4.8E-32 1.7E-36 267.9 16.7 233 26-283 85-336 (410)
3 1yt3_A Ribonuclease D, RNAse D 100.0 1.9E-30 6.6E-35 253.7 11.8 252 27-304 2-284 (375)
4 2e6m_A Werner syndrome ATP-dep 99.9 3E-27 1E-31 212.6 13.2 184 26-228 15-207 (208)
5 3cym_A Uncharacterized protein 99.9 5.4E-27 1.8E-31 233.7 10.8 230 29-283 19-257 (440)
6 1vk0_A Hypothetical protein; h 99.9 8.4E-26 2.9E-30 203.7 15.6 168 29-214 22-205 (206)
7 2kfn_A Klenow fragment of DNA 99.8 6.5E-18 2.2E-22 174.5 18.2 186 26-227 5-205 (605)
8 3pv8_A DNA polymerase I; DNA p 99.8 9.3E-18 3.2E-22 172.4 16.9 159 50-228 30-193 (592)
9 1x9m_A DNA polymerase; DNA plo 99.6 1.7E-14 5.8E-19 151.2 13.0 159 51-222 1-189 (698)
10 4dfk_A DNA polymerase I, therm 99.3 1.6E-12 5.5E-17 132.2 7.5 129 49-227 10-140 (540)
11 3v9w_A Ribonuclease T; DEDD nu 98.5 3E-07 1E-11 83.3 9.3 157 33-226 23-231 (235)
12 1bgx_T TAQ DNA polymerase; DNA 98.5 1.7E-07 5.9E-12 99.7 8.6 126 50-227 305-432 (832)
13 1vig_A Vigilin; RNA-binding pr 97.8 9E-06 3.1E-10 60.2 2.9 61 276-336 8-68 (71)
14 2ctm_A Vigilin; K homology typ 97.7 2.5E-05 8.7E-10 61.2 3.7 73 263-336 8-81 (95)
15 1dtj_A RNA-binding neurooncolo 97.6 2.5E-05 8.7E-10 58.3 3.1 64 276-339 6-74 (76)
16 2axy_A Poly(RC)-binding protei 97.6 9.3E-06 3.2E-10 60.5 -0.3 64 276-340 8-72 (73)
17 2ctk_A Vigilin; K homology typ 97.5 2.5E-05 8.4E-10 62.3 1.7 65 274-338 18-82 (104)
18 1zzk_A Heterogeneous nuclear r 97.5 4E-05 1.4E-09 58.2 2.4 65 276-340 10-76 (82)
19 2ctj_A Vigilin; K homology typ 97.5 2.8E-05 9.5E-10 61.0 1.4 68 270-337 14-82 (95)
20 2cte_A Vigilin; K homology typ 97.5 8.7E-05 3E-09 57.9 4.2 67 272-338 16-82 (94)
21 1we8_A Tudor and KH domain con 97.4 4.1E-05 1.4E-09 60.9 1.9 65 275-339 17-85 (104)
22 2p2r_A Poly(RC)-binding protei 97.4 2.3E-05 7.8E-10 58.6 0.3 64 276-339 8-73 (76)
23 2opv_A KHSRP protein; KH domai 97.4 8.6E-05 2.9E-09 56.7 3.5 64 275-338 16-83 (85)
24 2ctl_A Vigilin; K homology typ 97.4 0.00015 5.2E-09 56.9 4.4 63 274-337 18-84 (97)
25 1ec6_A RNA-binding protein NOV 97.4 2.8E-05 9.6E-10 59.7 -0.0 62 277-338 7-73 (87)
26 1wvn_A Poly(RC)-binding protei 97.3 4.7E-05 1.6E-09 57.8 1.1 64 276-339 9-74 (82)
27 2hh2_A KH-type splicing regula 97.3 0.00015 5E-09 58.0 3.3 65 276-340 10-79 (107)
28 1j5k_A Heterogeneous nuclear r 97.2 4.8E-05 1.7E-09 58.7 -0.6 67 274-340 15-83 (89)
29 1x4m_A FAR upstream element bi 97.1 0.00012 4E-09 57.2 1.5 68 273-340 15-86 (94)
30 1x4n_A FAR upstream element bi 97.1 6.7E-05 2.3E-09 58.3 -0.2 67 273-339 15-83 (92)
31 2p1j_A POLIII, DNA polymerase 97.1 0.0036 1.2E-07 54.2 10.8 137 47-220 10-180 (186)
32 2f96_A Ribonuclease T; RNAse, 97.0 0.0036 1.2E-07 55.8 10.6 87 102-223 126-220 (224)
33 2jvz_A KH type-splicing, FAR u 96.9 0.00053 1.8E-08 58.2 3.5 64 276-339 5-72 (164)
34 2hh3_A KH-type splicing regula 96.8 0.00036 1.2E-08 55.7 1.8 63 276-338 14-78 (106)
35 1wlj_A Interferon stimulated g 96.8 0.0038 1.3E-07 54.2 8.2 142 49-221 5-174 (189)
36 2jzx_A Poly(RC)-binding protei 96.7 0.0002 6.7E-09 60.8 -0.6 64 276-339 8-71 (160)
37 3krm_A Insulin-like growth fac 96.7 0.00077 2.6E-08 57.2 2.7 62 276-338 88-154 (163)
38 2jvz_A KH type-splicing, FAR u 96.6 0.001 3.4E-08 56.4 3.1 63 276-338 94-158 (164)
39 1j4w_A FUSE binding protein; s 96.5 0.00091 3.1E-08 57.5 2.3 63 274-337 105-173 (174)
40 3mxm_B Three prime repair exon 96.4 0.015 5.3E-07 52.6 10.2 100 90-217 104-216 (242)
41 2jzx_A Poly(RC)-binding protei 96.4 0.00047 1.6E-08 58.4 -0.4 65 276-340 92-159 (160)
42 3krm_A Insulin-like growth fac 96.3 0.00074 2.5E-08 57.4 0.6 63 277-339 7-72 (163)
43 1j4w_A FUSE binding protein; s 96.3 0.00069 2.3E-08 58.3 0.1 62 277-338 7-70 (174)
44 2anr_A Neuro-oncological ventr 96.2 0.0008 2.7E-08 58.0 0.0 68 273-340 104-175 (178)
45 3u3y_B Three prime repair exon 96.0 0.04 1.4E-06 52.0 10.8 102 90-217 104-216 (314)
46 2anr_A Neuro-oncological ventr 95.9 0.0015 5.1E-08 56.3 0.3 65 275-339 8-77 (178)
47 2gui_A DNA polymerase III epsi 95.8 0.058 2E-06 46.6 10.2 92 90-216 85-185 (194)
48 2dgr_A Ring finger and KH doma 95.7 0.0029 1E-07 48.1 1.3 62 274-336 11-72 (83)
49 2cpq_A FragIle X mental retard 95.6 0.0035 1.2E-07 48.5 1.2 61 274-337 16-78 (91)
50 2ctf_A Vigilin; K homology typ 95.6 0.0071 2.4E-07 47.7 3.0 61 274-337 28-89 (102)
51 2qnd_A FMR1 protein; KH domain 95.3 0.0041 1.4E-07 52.1 0.9 63 276-338 70-140 (144)
52 1y97_A Three prime repair exon 93.6 0.18 6.2E-06 44.8 7.7 100 90-217 99-211 (238)
53 2qnd_A FMR1 protein; KH domain 93.0 0.027 9.1E-07 47.0 1.0 57 276-334 7-64 (144)
54 2qxf_A Exodeoxyribonuclease I; 92.5 1.6 5.4E-05 43.4 13.4 96 91-215 85-200 (482)
55 2e3u_A PH-DIM2P, hypothetical 92.1 0.066 2.3E-06 47.9 2.5 48 283-335 139-186 (219)
56 1k1g_A SF1-BO isoform; splicin 90.3 0.15 5E-06 42.0 2.7 61 277-337 11-96 (131)
57 1tua_A Hypothetical protein AP 90.3 0.14 4.7E-06 44.9 2.6 47 283-334 108-154 (191)
58 2yqr_A KIAA0907 protein; struc 88.4 0.22 7.4E-06 40.3 2.3 53 283-336 29-95 (119)
59 3n89_A Defective in GERM LINE 87.9 0.24 8.2E-06 47.7 2.7 68 269-336 26-102 (376)
60 2xri_A ERI1 exoribonuclease 3; 86.0 2.5 8.7E-05 37.1 8.2 90 90-214 107-212 (224)
61 1w0h_A 3'-5' exonuclease ERI1; 85.4 1.3 4.6E-05 37.9 6.0 94 91-216 89-195 (204)
62 3u1k_A Polyribonucleotide nucl 84.5 0.24 8.2E-06 51.0 0.8 57 276-336 570-627 (630)
63 2e3u_A PH-DIM2P, hypothetical 84.3 0.3 1E-05 43.6 1.2 58 276-336 37-99 (219)
64 1qht_A Protein (DNA polymerase 84.1 24 0.00081 37.0 15.8 149 48-214 134-328 (775)
65 1zbh_A 3'-5' exonuclease ERI1; 77.8 3.8 0.00013 37.7 6.4 95 91-218 157-265 (299)
66 2bl5_A MGC83862 protein, quaki 77.3 0.95 3.2E-05 37.5 1.8 52 284-336 19-97 (140)
67 1zbu_A ERI-1 homolog, 3'-5' ex 73.4 8.2 0.00028 36.5 7.5 95 91-218 207-315 (349)
68 3n89_A Defective in GERM LINE 67.8 1.9 6.4E-05 41.5 1.7 60 278-337 191-258 (376)
69 3v69_A Protein filia; RNA-bind 58.7 7.4 0.00025 32.0 3.3 54 282-336 65-120 (140)
70 1tua_A Hypothetical protein AP 57.5 5 0.00017 34.8 2.3 56 276-334 7-67 (191)
71 3cg7_A CRN-4, cell death-relat 53.1 7.7 0.00026 35.9 3.0 97 91-216 99-209 (308)
72 2igi_A Oligoribonuclease; RNAs 52.7 64 0.0022 26.5 8.6 20 198-217 159-178 (180)
73 4aid_A Polyribonucleotide nucl 51.7 3.9 0.00013 42.7 0.8 56 276-335 573-629 (726)
74 3jxo_A TRKA-N domain protein; 34.6 24 0.00083 25.4 2.6 24 314-337 63-86 (86)
75 3k59_A POL II, DNA polymerase 33.2 2.9E+02 0.0098 28.9 11.5 141 48-212 152-349 (786)
76 3cdi_A Polynucleotide phosphor 30.7 10 0.00036 39.4 0.0 55 276-334 563-618 (723)
77 2gzo_A UPF0301 protein SO3346; 27.6 28 0.00096 30.1 2.2 43 281-324 33-89 (195)
78 3ikm_A DNA polymerase subunit 26.9 61 0.0021 35.3 4.9 104 104-218 196-349 (1172)
79 3tr8_A Oligoribonuclease; tran 22.6 69 0.0024 27.1 3.7 50 91-140 89-149 (186)
No 1
>3saf_A Exosome component 10; exoribonuclease, RNA exosome, hydrolase; 2.50A {Homo sapiens} PDB: 3sag_A 3sah_A 2cpr_A
Probab=100.00 E-value=4.6e-34 Score=283.06 Aligned_cols=236 Identities=21% Similarity=0.240 Sum_probs=186.8
Q ss_pred ccCeEEeCCCCcccHHhhcccccCCceEEEEeeeeCCC-CCCcEEEEEEEeCCcEEEEEcCCCChhHHHhhHHHhcCCCc
Q 019356 25 VVPIHIVTNASQLPAEFLEPSSERQLVIGFDCEGVDLC-RHGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYI 103 (342)
Q Consensus 25 ~~~i~~V~t~~~L~~~~l~~~l~~~~~Ia~D~E~~~~~-~~g~l~llQLa~~~~~~liD~~~l~~~~~~~L~~lLe~~~i 103 (342)
..+|.+|+|.+++.+ +++. +...+.+|||+|+.+.. +++++|+|||++++++|+||+..++. .+..|+++|+|+++
T Consensus 107 ~~~y~~I~t~e~L~~-~l~~-L~~~~~vavDtE~~~~~~~~~~l~lIQLa~~~~~~lidpl~l~~-~l~~L~~lL~dp~i 183 (428)
T 3saf_A 107 ETPCHFISSLDELVE-LNEK-LLNCQEFAVNLEHHSYRSFLGLTCLMQISTRTEDFIIDTLELRS-DMYILNESLTDPAI 183 (428)
T ss_dssp GSCEEEECSHHHHHH-HHHH-HTTCSEEEEEEEEECTTCSSCEEEEEEEECSSCEEEEETTTTGG-GGGGGHHHHTCTTS
T ss_pred CCCcEEECCHHHHHH-HHHH-HhcCCeEEEEEEecCCCCCCCeEEEEEEEeCCcEEEEEeccchh-hHHHHHHHHcCCCc
Confidence 468899999999997 9887 67788999999999876 78999999999988999999988753 36889999999999
Q ss_pred eEEEeehhhhHHHHHHhcCCccCceehHHHHHHhhccccCCCCCCCCCCcHHHhhcCccccCCccchhHHHHHHhcCCCC
Q 019356 104 TKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQ 183 (342)
Q Consensus 104 ~KV~hd~k~Dl~~L~~~~Gi~l~~vfDtqlAa~LL~~~~~~~~L~~~~~sL~~Lv~~~~~Lg~~l~kK~~~~~l~~~~~~ 183 (342)
.||+||+++|+.+|++.+|+.+.++||||+|+|+++++ .+||+.|++ +|||++++| ++ ..+
T Consensus 184 ~KV~H~~k~Dl~~L~~~~Gi~~~~~fDT~lAa~lL~~~---------~~gL~~Lv~--~~Lg~~l~K-~~-------~~s 244 (428)
T 3saf_A 184 VKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNLG---------RHSLDHLLK--LYCNVDSNK-QY-------QLA 244 (428)
T ss_dssp EEEESSCHHHHHHHHHHHCCCCSSEEEHHHHHHHTTCS---------CCSHHHHHH--HHHCCCCCC-TT-------TTS
T ss_pred eEEEeehHHHHHHHHHHcCCCcCceeechhHHHHhCCC---------CCCHHHHHH--HHcCCCCCc-cc-------ccc
Confidence 99999999999999779999999999999999999974 268999999 999999984 32 136
Q ss_pred CCCCCCCcHHHHHHHHHHhHHHHHHHHHHHHHHhcccc-----HHHHHhccc--cccccccCCCCCCCCCCCCCCCCcce
Q 019356 184 FWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSL-----WYLAVRGAL--YCRCFCINENDYVDWPPLPPVPGVRF 256 (342)
Q Consensus 184 dW~~RPLs~~ql~YAA~Da~~Ll~L~~~L~~~L~~~g~-----~~l~~~~~~--~~r~~~~~~~~~~~w~~~~~~~~~~~ 256 (342)
+|+.|||+++|+.|||.||+++++||+.|.++|++.|. +.+..+++. ..+.+..+......|..+-.... ..
T Consensus 245 dW~~rpLs~~q~~YAA~DA~~ll~L~~~L~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 323 (428)
T 3saf_A 245 DWRIRPLPEEMLSYARDDTHYLLYIYDKMRLEMWERGNGQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQK-KH 323 (428)
T ss_dssp CTTCSSCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHTTSCSHHHHHHHHHHHHHTTCCCCCCCCCTTGGGHHHHTTC-CC
T ss_pred ccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHHhhcCCCCCcccHHHHHHHhc-cC
Confidence 99999999999999999999999999999999999886 222222221 12222212122233432211110 02
Q ss_pred eccccccccCCC--ChhhhhhhcCCCCCC
Q 019356 257 IYVDYLIVEGDV--PEEEILSILDVPPGK 283 (342)
Q Consensus 257 ~~~~~l~~~~~~--~~~~~~~~~~~~~~~ 283 (342)
+..+++++.+.+ .|+++|+..|+||+.
T Consensus 324 l~~~~l~l~~~L~~wR~~~Ar~~d~p~~~ 352 (428)
T 3saf_A 324 LNTQQLTAFQLLFAWRDKTARREDESYGY 352 (428)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHTCCHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHcCCCcCE
Confidence 233577777775 899999999999766
No 2
>2hbj_A Exosome complex exonuclease RRP6; RNA metabolism, RNA surveillance, RNA processing, hydrolase, gene regulation; 2.10A {Saccharomyces cerevisiae} SCOP: a.60.8.4 c.55.3.5 PDB: 2hbk_A 2hbl_A* 2hbm_A*
Probab=99.98 E-value=4.8e-32 Score=267.92 Aligned_cols=233 Identities=23% Similarity=0.215 Sum_probs=190.8
Q ss_pred cCeEEeCCCCcccHHhhcccccCCceEEEEeeeeCCC-CCCcEEEEEEEeCCcEEEEEcCCCChhHHHhhHHHhcCCCce
Q 019356 26 VPIHIVTNASQLPAEFLEPSSERQLVIGFDCEGVDLC-RHGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYIT 104 (342)
Q Consensus 26 ~~i~~V~t~~~L~~~~l~~~l~~~~~Ia~D~E~~~~~-~~g~l~llQLa~~~~~~liD~~~l~~~~~~~L~~lLe~~~i~ 104 (342)
..+.+|++.+++.+ +++. +...+.+|||+|+.+.. +.+++|+|||++++.+|++|+..+. ..+..|+++|+|+.+.
T Consensus 85 ~~~~~I~t~~~L~~-~~~~-L~~~~~vavDtE~~~~~~~~~~l~liQla~~~~~ylid~l~l~-~~l~~L~~lL~d~~i~ 161 (410)
T 2hbj_A 85 SVPIWVDTSTELES-MLED-LKNTKEIAVDLEHHDYRSYYGIVCLMQISTRERDYLVDTLKLR-ENLHILNEVFTNPSIV 161 (410)
T ss_dssp CCCEEECSHHHHHH-HHHH-HTTCSEEEEEEEEECSSSSSCEEEEEEEECSSCEEEEETTTTT-TTGGGGHHHHTCTTSE
T ss_pred CCcEEeCCHHHHHH-HHHH-HhhCCceEEEeeecCCcCCCCcEEEEEEEECCcEEEEechhhh-hhHHHHHHHHcCCCce
Confidence 45788988888876 7776 55678899999999875 6889999999998889999976553 2357899999999999
Q ss_pred EEEeehhhhHHHHHHhcCCccCceehHHHHHHhhccccCCCCCCCCCCcHHHhhcCccccCCccchhHHHHHHhcCCCCC
Q 019356 105 KVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQF 184 (342)
Q Consensus 105 KV~hd~k~Dl~~L~~~~Gi~l~~vfDtqlAa~LL~~~~~~~~L~~~~~sL~~Lv~~~~~Lg~~l~kK~~~~~l~~~~~~d 184 (342)
||+||+++|+.+|++.+|+.+.++|||++|+|+++++ ..||+.|++ +|||..++ |+. ..++
T Consensus 162 KV~h~~k~Dl~~L~~~~Gi~~~~~fDt~lAa~LL~~~---------~~~L~~L~~--~~lg~~l~-K~~-------~~sd 222 (410)
T 2hbj_A 162 KVFHGAFMDIIWLQRDLGLYVVGLFDTYHASKAIGLP---------RHSLAYLLE--NFANFKTS-KKY-------QLAD 222 (410)
T ss_dssp EEESSCHHHHHHHHHHHCCCCSSEEEHHHHHHHHTCS---------CCSHHHHHH--HHSCCCCC-CTT-------TTSC
T ss_pred EEEEehHHHHHHHHHHcCCCcCCEEEcHHHHHHhCCC---------ccCHHHHHH--HHcCCCCC-ccc-------cccC
Confidence 9999999999999877999999999999999999975 268999999 99999887 332 1369
Q ss_pred CCCCCCcHHHHHHHHHHhHHHHHHHHHHHHHHhccccHHHHHhcccc--cccccc--------------CCCCCCCCCCC
Q 019356 185 WTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWYLAVRGALY--CRCFCI--------------NENDYVDWPPL 248 (342)
Q Consensus 185 W~~RPLs~~ql~YAA~Da~~Ll~L~~~L~~~L~~~g~~~l~~~~~~~--~r~~~~--------------~~~~~~~w~~~ 248 (342)
|+.|||+++|+.|||.||++++.||+.|.++|++.|++.|..+++.. .++|.. ..+....|+++
T Consensus 223 W~~rpL~~~q~~YAa~Da~~ll~L~~~L~~~L~~~g~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (410)
T 2hbj_A 223 WRIRPLSKPMTAAARADTHFLLNIYDQLRNKLIESNKLAGVLYESRNVAKRRFEYSKYRPLTPSSEVYSPIEKESPWKIL 302 (410)
T ss_dssp TTCSSCCHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCEECCGGGCCSSCCSSEECCCCSSSSSSSC
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHhHHHHHHHHHHHHhhhccccccccccccccCCchhHHHHHH
Confidence 99999999999999999999999999999999999999998887642 233310 11123459887
Q ss_pred CCCCCcceeccccccccCCC--ChhhhhhhcCCCCCC
Q 019356 249 PPVPGVRFIYVDYLIVEGDV--PEEEILSILDVPPGK 283 (342)
Q Consensus 249 ~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~ 283 (342)
.+.. .++.+++++.+.+ .|+++|+.+|+||+.
T Consensus 303 ~~~~---~l~~~~~~l~~~L~~wR~~~Ar~~d~p~~~ 336 (410)
T 2hbj_A 303 MYQY---NIPPEREVLVRELYQWRDLIARRDDESPRF 336 (410)
T ss_dssp SSCS---CCCSTTHHHHHHHHHHHHHHHHHHTCCHHH
T ss_pred hhhc---CCCHHHHHHHHHHHHHHHHHHHHcCCCCcE
Confidence 6554 3445566776665 899999999999876
No 3
>1yt3_A Ribonuclease D, RNAse D; exoribonuclease, exonuclease, hydrolase, tRNA processing, hydrolase,translation; 1.60A {Escherichia coli} SCOP: a.60.8.3 a.60.8.3 c.55.3.5
Probab=99.96 E-value=1.9e-30 Score=253.70 Aligned_cols=252 Identities=21% Similarity=0.194 Sum_probs=199.2
Q ss_pred CeEEeCCCCcccHHhhcccccCCceEEEEeeeeCCC-CCCcEEEEEEEeCCcEEEEEcCCCChhHHHhhHHHhcCCCceE
Q 019356 27 PIHIVTNASQLPAEFLEPSSERQLVIGFDCEGVDLC-RHGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITK 105 (342)
Q Consensus 27 ~i~~V~t~~~L~~~~l~~~l~~~~~Ia~D~E~~~~~-~~g~l~llQLa~~~~~~liD~~~l~~~~~~~L~~lLe~~~i~K 105 (342)
++.+|+|.+++.. +++. +...+.++||+|+.+.. +.+.+|++||++++++|++|+..+. .+..|+++|+|+++.|
T Consensus 2 ~~~~I~t~~~l~~-~~~~-l~~~~~va~D~E~~~~~~~~~~l~liqla~~~~~~lid~~~l~--~~~~L~~ll~d~~i~K 77 (375)
T 1yt3_A 2 NYQMITTDDALAS-LCEA-VRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGIT--DWSPLKAILRDPSITK 77 (375)
T ss_dssp CCEEECSHHHHHH-HHHH-HTTSSEEEEEEEEECCSCSSCEEEEEEEECSSCEEEECGGGCS--CCHHHHHHHHCTTSEE
T ss_pred CeEEeCCHHHHHH-HHHH-HcCCCeEEEEeeecCCCcCCCceEEEEEecCCcEEEEeCCCCC--ChHHHHHHHcCCCceE
Confidence 5678888888876 7776 55678899999999885 5789999999998889999965442 2578999999999999
Q ss_pred EEeehhhhHHHHHHhcCCccCceehHHHHHHhhccccCCCCCCCCCCcHHHhhcCccccCCccchhHHHHHHhcCCCCCC
Q 019356 106 VIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFW 185 (342)
Q Consensus 106 V~hd~k~Dl~~L~~~~Gi~l~~vfDtqlAa~LL~~~~~~~~L~~~~~sL~~Lv~~~~~Lg~~l~kK~~~~~l~~~~~~dW 185 (342)
|+||+++|+.+|++.+|+.+.++|||++|+|++++.. .+||+.|++ +|||..+. |++. .++|
T Consensus 78 v~h~~k~Dl~~L~~~~Gi~~~~~fDt~lAa~lL~~~~--------~~~L~~L~~--~~l~~~l~-K~~~-------~sdw 139 (375)
T 1yt3_A 78 FLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPM--------SWGFASMVE--EYSGVTLD-KSES-------RTDW 139 (375)
T ss_dssp EESSCHHHHHHHHHHHSSCCSSEEEHHHHHHHTTCCT--------TCCHHHHHH--HHHCCCCC-CTTT-------TSCT
T ss_pred EEeeHHHHHHHHHHHcCCCCCcEEEcHHHHHHcCCCC--------ChhHHHHHH--HHcCCCCC-CCcc-------cCCC
Confidence 9999999999997679999999999999999999841 479999999 99999887 3331 3699
Q ss_pred CCCCCcHHHHHHHHHHhHHHHHHHHHHHHHHhccccHHHHHhcccc--ccccccCCCCCCCCCCCCCCCCcceecccccc
Q 019356 186 TYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWYLAVRGALY--CRCFCINENDYVDWPPLPPVPGVRFIYVDYLI 263 (342)
Q Consensus 186 ~~RPLs~~ql~YAA~Da~~Ll~L~~~L~~~L~~~g~~~l~~~~~~~--~r~~~~~~~~~~~w~~~~~~~~~~~~~~~~l~ 263 (342)
+.|||+++|+.|||.||++++.||+.|.++|++.|+++|..+++.. .+... ..+....|+++.+.. .+..++++
T Consensus 140 ~~rpL~~~q~~YAa~Da~~l~~L~~~L~~~L~~~g~~~l~~~e~E~pl~~~~~-~~~~~~~~~~~~~~~---~l~~~~~~ 215 (375)
T 1yt3_A 140 LARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECRLMQMRRQE-VVAPEDAWRDITNAW---QLRTRQLA 215 (375)
T ss_dssp TSSSCCHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHC-CCCGGGGGGGSTTGG---GSCHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHhhccc-CCCchHHHHhccCcc---cCCHHHHH
Confidence 9999999999999999999999999999999999999995555432 11111 111223588865543 34446777
Q ss_pred ccCCC--ChhhhhhhcCCCCCCCc--------------------------eeeccCCchHHHHHHhhcc
Q 019356 264 VEGDV--PEEEILSILDVPPGKMG--------------------------RIIGRRGSSILAIKESCNA 304 (342)
Q Consensus 264 ~~~~~--~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~ 304 (342)
+.+++ .|+++|+..|+||+.+- ..++++|..++++++.+.+
T Consensus 216 ~~~~L~~wR~~~A~~~d~p~~~V~~d~~L~~iA~~~P~~~~~l~~ig~~~~~~~~~g~~~l~~i~~~~~ 284 (375)
T 1yt3_A 216 CLQLLADWRLRKARERDLAVNFVVREEHLWSVARYMPGSLGELDSLGLSGSEIRFHGKTLLALVEKAQT 284 (375)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGTSCHHHHHHHHHHCCCSHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCcceEECHHHHHHHHHHCCCCHHHHHhcCCChHHHHHHHHHHHHHHHHHHh
Confidence 77775 79999999999998721 1334567777777777654
No 4
>2e6m_A Werner syndrome ATP-dependent helicase homolog; APO form, hydrolase; 2.00A {Mus musculus} PDB: 2e6l_A 2fby_A 2fbv_A 2fbx_A 2fbt_A 2fc0_A*
Probab=99.94 E-value=3e-27 Score=212.56 Aligned_cols=184 Identities=23% Similarity=0.205 Sum_probs=143.9
Q ss_pred cCeEEeCCCCcccH---HhhcccccCCceEEEEeeeeCC---CCCCcEEEEEEEeC-CcEEEEEcCCCChhHHHhhHHHh
Q 019356 26 VPIHIVTNASQLPA---EFLEPSSERQLVIGFDCEGVDL---CRHGSLCIMQLAFP-DAIYLVDAIQGGETVVKACKPAL 98 (342)
Q Consensus 26 ~~i~~V~t~~~L~~---~~l~~~l~~~~~Ia~D~E~~~~---~~~g~l~llQLa~~-~~~~liD~~~l~~~~~~~L~~lL 98 (342)
.++.+|+|.+++.. .+++. +...+.+|||+||.+. .+.++++++|++++ +.+++||+..+. .+...|+++|
T Consensus 15 g~i~~i~~~~~~~~~~~~~~~~-l~~~~~v~~D~E~~~~~~~~~~~~~~~iqla~~~~~~~~i~~~~~~-~~~~~L~~lL 92 (208)
T 2e6m_A 15 GSIVYSYEASDCSFLSEDISMR-LSDGDVVGFDMEWPPIYKPGKRSRVAVIQLCVSESKCYLFHISSMS-VFPQGLKMLL 92 (208)
T ss_dssp SEEEEECSHHHHHHHHHHHHHH-CCTTCEEEEEEECCC---CCSCCCCCEEEEECSSSEEEEECGGGCS-SCCHHHHHHH
T ss_pred CcEEEEeCHHHHHHHHHHHHHH-hccCCEEEEEeecCCCCCCCCCCCeEEEEEecCCCeEEEEECcccc-cchHHHHHHh
Confidence 46889999998873 14444 5666889999999886 35789999999984 689999876543 2357899999
Q ss_pred cCCCceEEEeehhhhHHHHHHhcCCccCceeh-HHHHHHhhccccCCCCCCCCCCcHHHhhcCccccCCccch-hHHHHH
Q 019356 99 ESSYITKVIHDCKRDSEALYFQFGIKLHNVVD-TQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQE-KEEVRV 176 (342)
Q Consensus 99 e~~~i~KV~hd~k~Dl~~L~~~~Gi~l~~vfD-tqlAa~LL~~~~~~~~L~~~~~sL~~Lv~~~~~Lg~~l~k-K~~~~~ 176 (342)
+|+.+.||+||+|.|+..|.+.+|+.+.++|| |++|+|++++.. ..||+.|++ +|||..+.| |...
T Consensus 93 ~d~~i~Kv~~~~k~D~~~L~~~~gi~~~~~fDlt~lAayll~~~~--------~~~L~~L~~--~~l~~~~~K~k~~~-- 160 (208)
T 2e6m_A 93 ENKSIKKAGVGIEGDQWKLLRDFDVKLESFVELTDVANEKLKCAE--------TWSLNGLVK--HVLGKQLLKDKSIR-- 160 (208)
T ss_dssp TCTTSEEEESSHHHHHHHHHHHHCCCCCSEEEHHHHHHHHTTCCC--------CCCHHHHHH--HHHSCBCCCCHHHH--
T ss_pred cCCCceEEEEeeHHHHHHHHHHCCCCCCCEEEHHHHHHHHccCCC--------ChhHHHHHH--HHcCCCcCCCCCee--
Confidence 99999999999999999997669999999999 999999999731 479999999 999988752 2221
Q ss_pred HhcCCCCCCCCCCCcHHHHHHHHHHhHHHHHHHHHHHHHHhccccHHHHHhc
Q 019356 177 LLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWYLAVRG 228 (342)
Q Consensus 177 l~~~~~~dW~~RPLs~~ql~YAA~Da~~Ll~L~~~L~~~L~~~g~~~l~~~~ 228 (342)
.++|..|||+++|+.|||.||++++.|++.|.++|++.|++.|..+|
T Consensus 161 -----~s~W~~~~L~~~q~~YAa~Da~~~~~L~~~L~~~L~~~~~~~~~~~~ 207 (208)
T 2e6m_A 161 -----CSNWSNFPLTEDQKLYAATDAYAGLIIYQKLGNLGDTVQVFALNKAE 207 (208)
T ss_dssp -----TSCTTSSSCCHHHHHHHHHHHHHHHHHHHHHHTCC------------
T ss_pred -----eCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhcccc
Confidence 26999999999999999999999999999999999999999988766
No 5
>3cym_A Uncharacterized protein BAD_0989; structural genomics, unknown function; 2.10A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}
Probab=99.94 E-value=5.4e-27 Score=233.70 Aligned_cols=230 Identities=17% Similarity=0.213 Sum_probs=179.5
Q ss_pred EEeCCCCcccHHhhcccccCC-ceEEEEeeeeCCC-CCCcEEEEEEEeC-CcEEEEEcCCCCh--hHHHhhHHHhcCCCc
Q 019356 29 HIVTNASQLPAEFLEPSSERQ-LVIGFDCEGVDLC-RHGSLCIMQLAFP-DAIYLVDAIQGGE--TVVKACKPALESSYI 103 (342)
Q Consensus 29 ~~V~t~~~L~~~~l~~~l~~~-~~Ia~D~E~~~~~-~~g~l~llQLa~~-~~~~liD~~~l~~--~~~~~L~~lLe~~~i 103 (342)
.+|++.+++.+ +++. +... +.++||+|+.+.. +.+.+|+|||++. +.+|+||+..... ..+..|+++|+|+
T Consensus 19 ~~I~t~e~L~~-~~~~-L~~~~~~vavDtE~~~~~~~~~~l~liQla~~~~~~~lid~l~~~~~~~~l~~L~~lL~d~-- 94 (440)
T 3cym_A 19 NVIDTLPAFRD-YCSE-LASSHGSLAADAERASGFRYGHEDWLVQFKRDGAGIGLLDPQALAAAGADWNDFNRAVGDA-- 94 (440)
T ss_dssp CEECSHHHHHH-HHHH-HHSCEEEEEEEEEECTTTSSSCCEEEEEEEEETTEEEEECHHHHHHTTCCHHHHHHHHTTC--
T ss_pred EeeCCHHHHHH-HHHH-HHhcCCeEEEEeeecCCCCCCCCEEEEEEEECCCcEEEEEcCCccccccCHHHHHHHHCCC--
Confidence 56778777875 7776 4555 7899999998874 6889999999984 5589998743210 0156899999997
Q ss_pred eEEEeehhhhHHHHHHhcCCccCceehHHHHHHhhccccCCCCCCCCCCcHHHhhcCccccCCccchhHHHHHHhcCCCC
Q 019356 104 TKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQ 183 (342)
Q Consensus 104 ~KV~hd~k~Dl~~L~~~~Gi~l~~vfDtqlAa~LL~~~~~~~~L~~~~~sL~~Lv~~~~~Lg~~l~kK~~~~~l~~~~~~ 183 (342)
.||+|++++|+.+|. .+|+.+.++|||++|+|++++. .+||+.|++ +|+|..+.| +. ..+
T Consensus 95 ~KV~h~~k~Dl~~L~-~~gi~~~~~fDt~lAa~lL~~~---------~~gL~~L~~--~~lg~~~~K-~~-------~~s 154 (440)
T 3cym_A 95 VWILHDSLQDLPGFD-ELGMEPQRLFDTEIAARLLGLK---------RFGLAAVTE--HFLGLTLAK-EH-------SAA 154 (440)
T ss_dssp EEEESSHHHHHHHHH-HHTCCCCEEEEHHHHHHHTTCS---------SCSHHHHHH--HHHCEECCC-CC-------TTC
T ss_pred CEEEEcCHHHHHHHH-HcCCcCCceehHHHHHHHhCCC---------CCCHHHHHH--HHhCCCccc-cc-------ccC
Confidence 699999999999995 8999999999999999999973 268999999 999988873 32 136
Q ss_pred CCCCCCCcHHHHHHHHHHhHHHHHHHHHHHHHHhccccHHHHHhcccccccc--ccCCCCCCCCCCCCCCCCcceecccc
Q 019356 184 FWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWYLAVRGALYCRCF--CINENDYVDWPPLPPVPGVRFIYVDY 261 (342)
Q Consensus 184 dW~~RPLs~~ql~YAA~Da~~Ll~L~~~L~~~L~~~g~~~l~~~~~~~~r~~--~~~~~~~~~w~~~~~~~~~~~~~~~~ 261 (342)
+|..|||+++|+.|||.||++++.||+.|.++|.+.|+++|+.+++...... ..+.+....|+++.+...+. -..++
T Consensus 155 dw~~rpLs~~q~~YAa~Da~~Ll~L~~~L~~~L~~~g~~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~ 233 (440)
T 3cym_A 155 DWSYRPLPRDWRNYAALDVELLIELETKMRAELKRQGKMEWAQEEFDYALKEGLGPRKEHLIPWMHVSHITEVM-RDRQA 233 (440)
T ss_dssp CTTCSSCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHSSSCCCCSSGGGCCTTGGGGT-TCHHH
T ss_pred CCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHhccccccCCCchHHHHHhccccccC-CCHHH
Confidence 9999999999999999999999999999999999999999998887532211 11222335587755433210 02357
Q ss_pred ccccCCC--ChhhhhhhcCCCCCC
Q 019356 262 LIVEGDV--PEEEILSILDVPPGK 283 (342)
Q Consensus 262 l~~~~~~--~~~~~~~~~~~~~~~ 283 (342)
+++.+++ .|+++++..|+||+.
T Consensus 234 l~~~~~L~~wR~~~Ar~~d~p~~~ 257 (440)
T 3cym_A 234 LAIVRALWTRRDELAREYDIAPTL 257 (440)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCccE
Confidence 7777775 799999999999876
No 6
>1vk0_A Hypothetical protein; homohexamer, AT5G06450, struc genomics, protein structure initiative, center for eukaryot structural genomics, CESG; 2.10A {Arabidopsis thaliana} SCOP: c.55.3.5 PDB: 2q3s_A
Probab=99.93 E-value=8.4e-26 Score=203.67 Aligned_cols=168 Identities=14% Similarity=0.097 Sum_probs=134.0
Q ss_pred EEeCCCCcccHHhhccc-----ccCCceEEEEeeeeCC-------CCC--CcEEEEEEEeCCcEEEEEcCCCChhHHHhh
Q 019356 29 HIVTNASQLPAEFLEPS-----SERQLVIGFDCEGVDL-------CRH--GSLCIMQLAFPDAIYLVDAIQGGETVVKAC 94 (342)
Q Consensus 29 ~~V~t~~~L~~~~l~~~-----l~~~~~Ia~D~E~~~~-------~~~--g~l~llQLa~~~~~~liD~~~l~~~~~~~L 94 (342)
..|++.+++.. +++.. ..+..+||||+||.+. .++ +++|+||||+++++++|++...-...+..|
T Consensus 22 ~~v~~~~~l~~-~~~~~~~~~~~~~~~vvg~DtEw~p~~~~~~~~~~~~~~~~~LiQla~~~~~~l~~l~~~~~~~L~~L 100 (206)
T 1vk0_A 22 IDVGSSTDISP-YLSLIREDSILNGNRAVIFDVYWDVGFPETETKTKTSGWSLSSVKLSTRNLCLFLRLPKPFHDNLKDL 100 (206)
T ss_dssp EECCSSCCCHH-HHHHHHHHHHHHSTTEEEEEEEEECCC------CGGGGCEEEEEEEECSSEEEEEECCSSCCGGGHHH
T ss_pred EEEecHHHHHH-HHHHHHHhhhhcCCCEEEEEeeccCCCcccccccCCCCCceEEEEEecCCCeEEEeccccCCccHHHH
Confidence 45667777775 66541 1456799999999853 133 589999999998999999821111123458
Q ss_pred HHHhcCCCceEEEeehhhhHHHHHHhcCCccCceehHH-HHHHhhccccCCCCCCCCCCcHHHhhcCccccCCccch-hH
Q 019356 95 KPALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQ-IAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQE-KE 172 (342)
Q Consensus 95 ~~lLe~~~i~KV~hd~k~Dl~~L~~~~Gi~l~~vfDtq-lAa~LL~~~~~~~~L~~~~~sL~~Lv~~~~~Lg~~l~k-K~ 172 (342)
+.+|+|++|.||||++++|+..|++.+|+.+.++|||+ +|..+++.... ..+||+.|++ ++||+++ | |+
T Consensus 101 ~~lL~d~~i~Kvg~~~~~D~~~L~~~~g~~~~~~~Dl~~la~~~lg~~~~------~~~gL~~Lv~--~~lg~~l-K~k~ 171 (206)
T 1vk0_A 101 YRFFASKFVTFVGVQIEEDLDLLRENHGLVIRNAINVGKLAAEARGTLVL------EFLGTRELAH--RVLWSDL-GQLD 171 (206)
T ss_dssp HHHHTCSSSEEEESSCHHHHHHHHHHHCCCCSSEEEHHHHHHHHHTCGGG------GGCCHHHHHH--HHHCCCC-HHHH
T ss_pred HHHhcCCCceEEEeccHHHHHHHHHhcCCCcCCeeeHHHHHHHHcCCCCC------CCccHHHHHH--HHhCCcC-CCCC
Confidence 89999999999999999999999999999999999997 77777775311 2479999999 9999999 3 33
Q ss_pred HHHHHhcCCCCCCCCCCCcHHHHHHHHHHhHHHHHHHHHHHH
Q 019356 173 EVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMK 214 (342)
Q Consensus 173 ~~~~l~~~~~~dW~~RPLs~~ql~YAA~Da~~Ll~L~~~L~~ 214 (342)
... +||.. |||++|+.|||.||++++.||++|.+
T Consensus 172 ~~~-------SdW~~-pLs~~Qi~YAA~Da~~l~~l~~~L~~ 205 (206)
T 1vk0_A 172 SIE-------AKWEK-AGPEEQLEAAAIEGWLIVNVWDQLSD 205 (206)
T ss_dssp HHH-------HTGGG-SCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccc-------CCCCC-cCCHHHHHHHHHHHHHHHHHHHHHHc
Confidence 333 49999 99999999999999999999999864
No 7
>2kfn_A Klenow fragment of DNA polymerase I; complex (polymerase/DNA), exonuclease, transferase, transferase/DNA complex; HET: US1; 2.03A {Escherichia coli} SCOP: c.55.3.5 e.8.1.1 PDB: 1d9f_A* 1d9d_A* 1krp_A* 1ksp_A* 1qsl_A* 1kfs_A* 2kfz_A* 2kzm_A* 2kzz_A* 1dpi_A* 1kfd_A* 1kln_A* 1d8y_A*
Probab=99.77 E-value=6.5e-18 Score=174.47 Aligned_cols=186 Identities=21% Similarity=0.221 Sum_probs=147.5
Q ss_pred cCeEEeCCCCcccHHhhcccccCCceEEEEeeeeCCC-CCCcEEEEEEEe-CCcEEEEEcCC--------CC-hhHHHhh
Q 019356 26 VPIHIVTNASQLPAEFLEPSSERQLVIGFDCEGVDLC-RHGSLCIMQLAF-PDAIYLVDAIQ--------GG-ETVVKAC 94 (342)
Q Consensus 26 ~~i~~V~t~~~L~~~~l~~~l~~~~~Ia~D~E~~~~~-~~g~l~llQLa~-~~~~~liD~~~--------l~-~~~~~~L 94 (342)
.+|.+|++.+++.+ +++. +.....++||+|+.+.. +.++++++|++. .+..++|++.. +. ++++..|
T Consensus 5 ~~y~~I~~~~~l~~-~~~~-l~~~~~va~DtEttgl~~~~~~iv~I~~~~~~g~~~yip~~~~~~~~~~~l~~~~vl~~L 82 (605)
T 2kfn_A 5 DNYVTILDEETLKA-WIAK-LEKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERALELL 82 (605)
T ss_dssp SSSEECCSHHHHHH-HHHH-HHTSSSEEEEEEESCSCTTTCCEEEEEEEEETTEEEEEECCCCSTTCCCCCCHHHHHHHH
T ss_pred hheEEecCHHHHHH-HHHh-cccCCeEEEEEecCCCCcccCceEEEEEEEcCCcEEEEeccccccccccccCHHHHHHHH
Confidence 45677888777775 7776 45567899999999985 578999999997 66677774432 11 2356789
Q ss_pred HHHhcCCCceEEEeehhhhHHHHHHhcCCccCc-eehHHHHHHhhccccCCCCCCCCCCcHHHhhcCccccCCccchhHH
Q 019356 95 KPALESSYITKVIHDCKRDSEALYFQFGIKLHN-VVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEE 173 (342)
Q Consensus 95 ~~lLe~~~i~KV~hd~k~Dl~~L~~~~Gi~l~~-vfDtqlAa~LL~~~~~~~~L~~~~~sL~~Lv~~~~~Lg~~l~kK~~ 173 (342)
+++|+++.+.||+||+++|+.+|. .+|+.+.+ +|||++++|++++... .++|+.|++ +|||....+.+.
T Consensus 83 ~~~L~d~~i~kV~hnak~D~~~L~-~~Gi~l~~~~~DT~laayLL~p~~~-------~~~L~~La~--~~Lg~~~i~~~~ 152 (605)
T 2kfn_A 83 KPLLEDEKALKVGQNLKYDRGILA-NYGIELRGIAFDTMLESYILNSVAG-------RHDMDSLAE--RWLKHKTITFEE 152 (605)
T ss_dssp HHHHTCTTSCEEESSHHHHHHHHH-TTTCCCCCEEEEHHHHHHHHCTTSS-------CCSHHHHHH--HHSCCCCCCHHH
T ss_pred HHHHcCCCCeEEEECcHHHHHHHH-HCCCCCCCccccHHHHHHHhCCCCC-------CCCHHHHHH--HhcCCCcccHHH
Confidence 999999999999999999999995 68999876 8999999999998643 368899999 998876542122
Q ss_pred HHHHhcC--CCCCCCCCCCcHHHHHHHHHHhHHHHHHHHHHHHHHhc-cccHHHHHh
Q 019356 174 VRVLLRQ--DPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQ-QSLWYLAVR 227 (342)
Q Consensus 174 ~~~l~~~--~~~dW~~RPLs~~ql~YAA~Da~~Ll~L~~~L~~~L~~-~g~~~l~~~ 227 (342)
++++ ...+|..+|+ +.+..||+.||.+++.|+..|.++|++ .|+++++.+
T Consensus 153 ---~~gKg~~~~~~~~~~l-e~~~~yAa~Da~~~~~L~~~L~~~L~~~~~l~~L~~~ 205 (605)
T 2kfn_A 153 ---IAGKGKNQLTFNQIAL-EEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFEN 205 (605)
T ss_dssp ---HHCSSTTCCCGGGSCH-HHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred ---HhCCCcccCCcccCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 2222 2248988888 679999999999999999999999999 888887743
No 8
>3pv8_A DNA polymerase I; DNA polymerase I, protein-DNA complex, thymine-adenine, CLOS conformation; HET: DNA 2DT D3T; 1.52A {Geobacillus kaustophilus} PDB: 3px0_A* 3px4_A* 3px6_A* 3thv_A* 3ti0_A* 4dse_A* 4dsf_A* 4ds4_A* 4dqp_A* 4dqi_A* 4ds5_A* 4e0d_A* 4dqr_A* 4dqq_A* 3tan_A* 3tap_A* 3taq_A* 3tar_A* 4dqs_A* 3hp6_A* ...
Probab=99.76 E-value=9.3e-18 Score=172.41 Aligned_cols=159 Identities=14% Similarity=0.030 Sum_probs=132.2
Q ss_pred ceEEEEeeeeCCC-CCCcEEEEEEEeCCcEEEEEcCCCChhHHHhhHHHhcCCCceEEEeehhhhHHHHHHhcCCccC-c
Q 019356 50 LVIGFDCEGVDLC-RHGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLH-N 127 (342)
Q Consensus 50 ~~Ia~D~E~~~~~-~~g~l~llQLa~~~~~~liD~~~l~~~~~~~L~~lLe~~~i~KV~hd~k~Dl~~L~~~~Gi~l~-~ 127 (342)
...++|+|+.+.. +.++++++|++.++++|+|+... ......|+++|+|+.+.||+||+|+|+.+|. .+|+.+. .
T Consensus 30 ~~~aldtE~~~~~~~~a~Lvgisla~~~~a~yIp~~~--~~~l~~Lk~lLed~~i~KV~hn~K~Dl~vL~-~~Gi~l~g~ 106 (592)
T 3pv8_A 30 DKAALVVEVVEENYHDAPIVGIAVVNEHGRFFLRPET--ALADPQFVAWLGDETKKKSMFDSKRAAVALK-WKGIELCGV 106 (592)
T ss_dssp SEEEEEEECCSSSCTTCCCCEEEEEETTEEEEECHHH--HTTCHHHHHHHTCTTSEEEESSHHHHHHHHH-HTTCCCCCE
T ss_pred cCcEEEEEEcCCccCcccEEEEEEEcCCceEEEccch--hhHHHHHHHHHhCCCCeEEEechHHHHHHHH-HcCCCCCCc
Confidence 4568999998876 67899999999987889987532 1235789999999999999999999999994 7999986 4
Q ss_pred eehHHHHHHhhccccCCCCCCCCCCcHHHhhcCccccCCccchhHHHHHHhcCCCCCCC---CCCCcHHHHHHHHHHhHH
Q 019356 128 VVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFWT---YRPLTELMVRAAADDVRF 204 (342)
Q Consensus 128 vfDtqlAa~LL~~~~~~~~L~~~~~sL~~Lv~~~~~Lg~~l~kK~~~~~l~~~~~~dW~---~RPLs~~ql~YAA~Da~~ 204 (342)
+||||+|+||++++.++ ++|+.|++ +|||..+.+.+++. +|. .+|.++.+..|||.||.+
T Consensus 107 ~fDTmLAAYLL~p~~~~-------~~L~~La~--~yLg~~l~~~ee~~--------gkg~~~~~~~~e~~~~YAa~DA~~ 169 (592)
T 3pv8_A 107 SFDLLLAAYLLDPAQGV-------DDVAAAAK--MKQYEAVRPDEAVY--------GKGAKRAVPDEPVLAEHLVRKAAA 169 (592)
T ss_dssp EEEHHHHHHHHCGGGCC-------CSHHHHHG--GGTCCSSCCHHHHH--------CSGGGCCCCCHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHcCCCCCC-------CCHHHHHH--HHcCCCCchHHHhc--------CccccccCccHHHHHHHHHHHHHH
Confidence 99999999999997533 68899999 99999887543321 332 355668899999999999
Q ss_pred HHHHHHHHHHHHhccccHHHHHhc
Q 019356 205 LPYIYHNMMKKLNQQSLWYLAVRG 228 (342)
Q Consensus 205 Ll~L~~~L~~~L~~~g~~~l~~~~ 228 (342)
+++|++.|.++|++.+++.++..-
T Consensus 170 l~~L~~~L~~~L~e~~l~~l~~~~ 193 (592)
T 3pv8_A 170 IWELERPFLDELRRNEQDRLLVEL 193 (592)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHT
T ss_pred HHHHHHHHHHHHhcchhhhHHHHH
Confidence 999999999999999999988643
No 9
>1x9m_A DNA polymerase; DNA ploymerase, N-2-acetylaminofluorene, replication block, mutagenesis, transferase/electron transport/DNA complex; HET: DNA 2DT 8FG; 2.10A {Enterobacteria phage T7} SCOP: c.55.3.5 e.8.1.1 PDB: 1skr_A* 1skw_A* 1sl0_A* 1sks_A* 1sl2_A* 1t7p_A* 1t8e_A* 1tk0_A* 1tk5_A* 1tk8_A* 1tkd_A* 1sl1_A* 1x9s_A* 1x9w_A* 1zyq_A* 2ajq_A*
Probab=99.55 E-value=1.7e-14 Score=151.15 Aligned_cols=159 Identities=16% Similarity=0.044 Sum_probs=122.6
Q ss_pred eEEEEeeeeCCC-CCCcEEEEEEEe--CCcEEEEEcCCCChhHHHhhHHHhcCCCceEEEeeh-hhhHHHHHHhc-----
Q 019356 51 VIGFDCEGVDLC-RHGSLCIMQLAF--PDAIYLVDAIQGGETVVKACKPALESSYITKVIHDC-KRDSEALYFQF----- 121 (342)
Q Consensus 51 ~Ia~D~E~~~~~-~~g~l~llQLa~--~~~~~liD~~~l~~~~~~~L~~lLe~~~i~KV~hd~-k~Dl~~L~~~~----- 121 (342)
.++||+|+.++. ..++++++|+.. .+.++++|+..+. ..+..|+++|+ +.+.||+||+ ++|+.+|.+.+
T Consensus 1 ~vv~D~ETtGl~~~~d~i~~iqi~~~~~~~~~~~~p~~i~-~~l~~L~~~l~-~~~~kV~HNa~kfD~~~L~~~~~~~~~ 78 (698)
T 1x9m_A 1 MIVSDIEANALLESVTKFHCGVIYDYSTAEYVSYRPSDFG-AYLDALEAEVA-RGGLIVFHNGHKYDVPALTKLAKLQLN 78 (698)
T ss_dssp CEEEEEEESSCGGGCCCEEEEEEEETTTTEEEEECGGGHH-HHHHHHHHHHH-TTCCEEESSTTTTHHHHHHHHHHHHHC
T ss_pred CEEEEcCCCCcCCCCCEEEEEEEEecCCCcEEEEChHHHH-HHHHHHHHHHh-cCCeEEEcCChHHHHHHHHHhhhhccc
Confidence 379999999986 578999999998 4578889876442 34788999999 8899999999 99999996543
Q ss_pred -CCccC--ceehHHHHHHhhccccCCCCCCCCCCcHHHhhcCccccCCccchhH--------HHHHHhc-----CCC---
Q 019356 122 -GIKLH--NVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKE--------EVRVLLR-----QDP--- 182 (342)
Q Consensus 122 -Gi~l~--~vfDtqlAa~LL~~~~~~~~L~~~~~sL~~Lv~~~~~Lg~~l~kK~--------~~~~l~~-----~~~--- 182 (342)
|+.+. .+||||+|+|++++...+ ++|+.|++ +||+.+|..-. ....+++ +..
T Consensus 79 ~Gi~l~~~~~~DTmlaayLL~p~~~~-------~~L~~La~--~~L~~sL~~~g~~lg~~Ki~~~~~~g~~~~~kg~~~~ 149 (698)
T 1x9m_A 79 REFHLPRENCIDTLVLSRLIHSNLKD-------TDMGLLRS--GKLPGALEAWGYRLGEMKGEYKDDFKRMLEEQGEEYV 149 (698)
T ss_dssp CCCCCCGGGEEEHHHHHHHHTTTSCC-------CTTTTSCG--GGSCSCCCHHHHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred CCccCCCCcchhHHHHHHHhCCCCCC-------CCHHHHHH--HHcccchhhhcccccccccCHHHHhCccccccccccc
Confidence 98776 499999999999986533 57789998 88833332100 1011122 111
Q ss_pred --CCCCCCCCcHHHHHHHHHHhHHHHHHHHHHHHHHhccccH
Q 019356 183 --QFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLW 222 (342)
Q Consensus 183 --~dW~~RPLs~~ql~YAA~Da~~Ll~L~~~L~~~L~~~g~~ 222 (342)
.+|.. +++.+..||+.||.+++.|++.|.++|++.+++
T Consensus 150 ~~~~~~~--~~~~~~~YA~~Da~~t~~L~~~L~~~L~~~~~~ 189 (698)
T 1x9m_A 150 DGMEWWN--FNEEMMDYNVQDVVVTKALLEKLLSDKHYFPPE 189 (698)
T ss_dssp TTGGGTS--CCHHHHHHHHHHHHHHHHHHHHHHTCTTTSCTT
T ss_pred ccCCccc--cCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Confidence 17875 568899999999999999999999999988775
No 10
>4dfk_A DNA polymerase I, thermostable; DNA polymerase, transferase-DNA complex; HET: DNA DOC 0L5; 1.65A {Thermus aquaticus} PDB: 1jxe_A* 3ktq_A* 3lwl_A* 3lwm_A* 3m8s_A* 3m8r_A* 3oju_A* 3rr7_A* 3rr8_A* 3rrg_A* 3ojs_A* 3rtv_A* 3sv3_A* 3sv4_A* 3syz_A* 3sz2_A* 3t3f_A* 4df4_A* 4df8_A* 4dfj_A* ...
Probab=99.32 E-value=1.6e-12 Score=132.20 Aligned_cols=129 Identities=16% Similarity=0.094 Sum_probs=108.6
Q ss_pred CceEEEEeeeeCCC-CCCcEEEEEEEeCCcEEEEEcCCCChhHHHhhHHHhcCCCceEEEeehhhhHHHHHHhcCCccCc
Q 019356 49 QLVIGFDCEGVDLC-RHGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLHN 127 (342)
Q Consensus 49 ~~~Ia~D~E~~~~~-~~g~l~llQLa~~~~~~liD~~~l~~~~~~~L~~lLe~~~i~KV~hd~k~Dl~~L~~~~Gi~l~~ 127 (342)
.+.+++|+|+.+.. +..+++++|++.++++|+++ .....|+++|+| +.||+||+|+|+. .+|+.+..
T Consensus 10 p~~valDtE~~~~~~~~a~Lvgi~la~~~~a~~i~------~~l~~l~~~l~d--~~kV~hn~K~Dl~----~~Gi~~~~ 77 (540)
T 4dfk_A 10 PEGAFVGFVLSRKEPMWADLLALAAARGGRVHRAP------EPYKALRDLKEA--RGLLAKDLSVLAL----REGLGLPP 77 (540)
T ss_dssp CTTCEEEEEESSSCTTTCCEEEEEEEETTEEEECS------SHHHHHTTCSSB--CSTTHHHHHHHHH----HTTCCCCB
T ss_pred CCceEEEEEecCCccCcccEEEEEEEcCCEEEEeh------hhHHHHHHHHcC--CCEEEeccHHHHH----HcCCCCCc
Confidence 35599999999886 67899999999988888875 246889999998 7899999999999 57888778
Q ss_pred eehHHHHHHhhccccCCCCCCCCCCcHHHhhcCccccCCccchhHHHHHHhcCCCCCCCCCCCcHHHHHHHHHHhHHHHH
Q 019356 128 VVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPY 207 (342)
Q Consensus 128 vfDtqlAa~LL~~~~~~~~L~~~~~sL~~Lv~~~~~Lg~~l~kK~~~~~l~~~~~~dW~~RPLs~~ql~YAA~Da~~Ll~ 207 (342)
+|||++|+|+++++ + ++|++|++ +|++. +.+ +|+.||.++++
T Consensus 78 ~fDT~laAyLL~p~--~-------~~L~~La~--~yl~~-~gk--------------------------~a~~DA~~t~~ 119 (540)
T 4dfk_A 78 GDDPMLLAYLLDPS--N-------TTPEGVAR--RYGGE-WTE--------------------------EAGERAALSER 119 (540)
T ss_dssp CCCHHHHHHHHCTT--C-------CCHHHHHH--HHTSC-CCS--------------------------CHHHHHHHHHH
T ss_pred ceeHHHHHHHhCCC--C-------CCHHHHHH--HHhhh-hcc--------------------------chHHHHHHHHH
Confidence 89999999999986 3 58899999 88874 220 25689999999
Q ss_pred HHHHHHHHH-hccccHHHHHh
Q 019356 208 IYHNMMKKL-NQQSLWYLAVR 227 (342)
Q Consensus 208 L~~~L~~~L-~~~g~~~l~~~ 227 (342)
|++.|.++| ++.++++++..
T Consensus 120 L~~~L~~~L~~~~~~~~~~~~ 140 (540)
T 4dfk_A 120 LFANLWGRLEGEERLLWLYRE 140 (540)
T ss_dssp HHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhHHHHHH
Confidence 999999999 77788888765
No 11
>3v9w_A Ribonuclease T; DEDD nucleases family, EXO-nucleases, hydrolase-DNA complex; HET: DNA; 1.70A {Escherichia coli} PDB: 3ngy_A 3v9u_A* 3ngz_A* 3va3_A* 3v9z_A* 3nh0_A 3nh2_A 3nh1_A* 3v9s_A* 3v9x_A* 3va0_A* 2is3_A
Probab=98.51 E-value=3e-07 Score=83.28 Aligned_cols=157 Identities=12% Similarity=0.133 Sum_probs=98.7
Q ss_pred CCCcccHHhhcccccCCceEEEEeeeeCCC-CCCcEEEEEEEe-----CCc-------EEEEEcCC---C----------
Q 019356 33 NASQLPAEFLEPSSERQLVIGFDCEGVDLC-RHGSLCIMQLAF-----PDA-------IYLVDAIQ---G---------- 86 (342)
Q Consensus 33 t~~~L~~~~l~~~l~~~~~Ia~D~E~~~~~-~~g~l~llQLa~-----~~~-------~~liD~~~---l---------- 86 (342)
+.+++.. +... +.....++||+|+.++. ...+++-|.+.. .+. ..+|.+.. +
T Consensus 23 ~~~~~~~-l~~~-l~~~~~vviD~ETTGl~~~~~~IieIgav~~~~~~~g~i~~~~~f~~~v~P~~~~~i~~~~~~i~GI 100 (235)
T 3v9w_A 23 DNAQLTG-LCDR-FRGFYPVVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFNGI 100 (235)
T ss_dssp ------C-HHHH-TTTEEEEEEEEEESSSCTTTBCEEEEEEEEEEECTTSCEEEEEEEEEEBCCCTTCBCCHHHHHHHCC
T ss_pred ccccccC-chhc-ccCCcEEEEEEeCCCCCCCCCeEEEEEEEEEEEcCCCcccccceEEEEECCCCCCCCCHHHHHHhCC
Confidence 4444553 4444 56678999999999875 444544333331 111 12233310 0
Q ss_pred C-----------hhHHHhhHHHhcC-------CCceEEEeehhhhHHHHHHh---cCCcc-----CceehHHHHHHhhcc
Q 019356 87 G-----------ETVVKACKPALES-------SYITKVIHDCKRDSEALYFQ---FGIKL-----HNVVDTQIAYSLIEE 140 (342)
Q Consensus 87 ~-----------~~~~~~L~~lLe~-------~~i~KV~hd~k~Dl~~L~~~---~Gi~l-----~~vfDtqlAa~LL~~ 140 (342)
. .+++..+.+++++ .....|+||+++|+.+|.+. +|+.. ...+||+.+++.+.+
T Consensus 101 t~e~~v~~~~~~~~vl~~~~~~l~~~~~~~~~~~~~lVahN~~fD~~~L~~~~~~~g~~~~p~~~~~~~Dt~~la~~~~p 180 (235)
T 3v9w_A 101 DPNDPDRGAVSGYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERASLKRNPFHPFATFDTAALAGLALG 180 (235)
T ss_dssp CTTCGGGCCBCHHHHHHHHHHHHHHHHTTTTCCEEEEEETTTHHHHHHHHHHHHHTTCCCCCEEEEEEEEHHHHHHHHHS
T ss_pred CHHHHHhcCCCHHHHHHHHHHHHHHHhhhccCCCcEEEEeChHHHHHHHHHHHHHcCCCCCCCCCCcEEEhHHHHHHHhC
Confidence 0 1134556666642 45678999999999998543 47753 248999999998865
Q ss_pred ccCCCCCCCCCCcHHHhhcCccccCCccchhHHHHHHhcCCCCCCCCCCCcHHHHHHHHHHhHHHHHHHHHHHHHHhccc
Q 019356 141 QEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQS 220 (342)
Q Consensus 141 ~~~~~~L~~~~~sL~~Lv~~~~~Lg~~l~kK~~~~~l~~~~~~dW~~RPLs~~ql~YAA~Da~~Ll~L~~~L~~~L~~~g 220 (342)
. .+|..|++ .+|+++.. . ...+|..||.++.+|+..|.+++++.|
T Consensus 181 ~----------~~L~~l~~---~~gi~~~~-~---------------------~~H~Al~DA~~ta~l~~~l~~~l~~~~ 225 (235)
T 3v9w_A 181 Q----------TVLSKACQ---TAGMDFDS-T---------------------QAHSALYDTERTAVLFCEIVNRWKRLG 225 (235)
T ss_dssp C----------CSHHHHHH---HHTCCCCT-T---------------------TTTCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred C----------CCHHHHHH---HcCCCCCC-C---------------------CCcChHHHHHHHHHHHHHHHHHHHhcC
Confidence 2 47888986 44655431 0 023488999999999999999999999
Q ss_pred cHHHHH
Q 019356 221 LWYLAV 226 (342)
Q Consensus 221 ~~~l~~ 226 (342)
.|++..
T Consensus 226 ~~~l~~ 231 (235)
T 3v9w_A 226 GWPLSA 231 (235)
T ss_dssp CSSCC-
T ss_pred Cccccc
Confidence 888744
No 12
>1bgx_T TAQ DNA polymerase; DNA polymerase, FAB, PCR, inhibition, helix-coil dynamics, inhibitor design, complex (polymerase/inhibitor); 2.30A {Thermus aquaticus} SCOP: a.60.7.1 c.120.1.2 c.55.3.5 e.8.1.1 PDB: 1cmw_A 1tau_A* 1taq_A*
Probab=98.50 E-value=1.7e-07 Score=99.67 Aligned_cols=126 Identities=19% Similarity=0.187 Sum_probs=96.6
Q ss_pred ceEEEEeeeeCCCCCCcEEEEEEEe-CCcEEEEEcCCCChhHHHhhHHHhcCCCceEEEeehhhhHHHHHHhcCCccCce
Q 019356 50 LVIGFDCEGVDLCRHGSLCIMQLAF-PDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLHNV 128 (342)
Q Consensus 50 ~~Ia~D~E~~~~~~~g~l~llQLa~-~~~~~liD~~~l~~~~~~~L~~lLe~~~i~KV~hd~k~Dl~~L~~~~Gi~l~~v 128 (342)
+.+++|+|+.+ ...+++| ++++. ++.+++++. . + ..|+++|+++.+ |+|+|+.+|. .+|+.+..+
T Consensus 305 ~~va~d~et~~-~~~~~l~-vg~a~~~g~a~yvp~-~---~--~~Lk~lLed~~i-----n~K~d~~~L~-~~Gi~~~~~ 370 (832)
T 1bgx_T 305 AFVGFVLSRKE-PMWADLL-ALAAARGGRVHRAPE-P---Y--KALRDLKEARGL-----LAKDLSVLAL-REGLGLPPG 370 (832)
T ss_dssp CCBEEECSSSC-TTTCCCC-EEECBSSSEEECCSC-H---H--HHHHHCSSBCBT-----THHHHHHHHH-HHTCCCCBC
T ss_pred ceEEEEEecCC-cccCcee-EEEEEcCCCEEEEEC-C---H--HHHHHHHhCCCC-----ChHHHHHHHH-HcCCccCcc
Confidence 55899999877 4346664 44776 466777744 1 1 579999999986 9999999994 799998877
Q ss_pred ehHHHHHHhhccccCCCCCCCCCCcHHHhhcCccccCCccchhHHHHHHhcCCCCCCCCCCCcHHHHHHHHHHhHHHHHH
Q 019356 129 VDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYI 208 (342)
Q Consensus 129 fDtqlAa~LL~~~~~~~~L~~~~~sL~~Lv~~~~~Lg~~l~kK~~~~~l~~~~~~dW~~RPLs~~ql~YAA~Da~~Ll~L 208 (342)
|||++|+||+++. + ++|+.|++ +| |. +|. + + || .||.++++|
T Consensus 371 ~Dt~laayLl~p~--~-------~~l~~l~~--~~-gk-----------------~~~--~---~---ya-~da~~~~~l 412 (832)
T 1bgx_T 371 DDPMLLAYLLDPS--N-------TTPEGVAR--RY-GG-----------------EWT--E---E---AG-ERAALSERL 412 (832)
T ss_dssp CCHHHHHHHHCTT--C-------CSTTHHHH--HH-SC-----------------CCC--S---S---HH-HHHHHHHHH
T ss_pred cCHHHHHHHcCCC--C-------CCHHHHHH--Hh-CC-----------------Cch--H---H---HH-HHHHHHHHH
Confidence 9999999999985 3 46678887 55 20 231 1 1 87 799999999
Q ss_pred HHHHHHHHh-ccccHHHHHh
Q 019356 209 YHNMMKKLN-QQSLWYLAVR 227 (342)
Q Consensus 209 ~~~L~~~L~-~~g~~~l~~~ 227 (342)
++.|.++|. +.+++.++..
T Consensus 413 ~~~l~~~L~~~~~~~~l~~~ 432 (832)
T 1bgx_T 413 FANLWGRLEGEERLLWLYRE 432 (832)
T ss_dssp HHHHHHHHTTCHHHHHHHHT
T ss_pred HHHHHHHHhhhhhhHHHHHH
Confidence 999999999 7788887754
No 13
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=97.81 E-value=9e-06 Score=60.23 Aligned_cols=61 Identities=20% Similarity=0.263 Sum_probs=54.6
Q ss_pred hcCCCCCCCceeeccCCchHHHHHHhhcchhhcccCCCCCCeEEEecchhhHHHHHHHhhh
Q 019356 276 ILDVPPGKMGRIIGRRGSSILAIKESCNAEILIGGAKGPPDKVFIIGPVKQVRKAEAMLRG 336 (342)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (342)
...|||.+.+.+||++|.+|..|.+..++.|-|--...+++.|.|.|+.+.|.+|.+++.+
T Consensus 8 ~i~I~~~~ig~iIG~gG~~I~~I~e~tg~~I~i~~~g~~~~~V~I~G~~~~v~~A~~~I~~ 68 (71)
T 1vig_A 8 EINIDHKFHRHLIGKSGANINRIKDQYKVSVRIPPDSEKSNLIRIEGDPQGVQQAKRELLE 68 (71)
T ss_dssp EEEECSSHHHHHTCSSCCHHHHHHHHTCCEEECCCCCSSSEEEEEEESSHHHHHHHHHHHH
T ss_pred EEEECHHHhhhhcCCCCccHHHHHHHHCCEEEECCCCCcccEEEEEcCHHHHHHHHHHHHH
Confidence 4578999999999999999999999999999997654566789999999999999998875
No 14
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=97.68 E-value=2.5e-05 Score=61.19 Aligned_cols=73 Identities=22% Similarity=0.313 Sum_probs=59.8
Q ss_pred cccCCCChhhhhhhcCCCCCCCceeeccCCchHHHHHHhhcchhhcccCCC-CCCeEEEecchhhHHHHHHHhhh
Q 019356 263 IVEGDVPEEEILSILDVPPGKMGRIIGRRGSSILAIKESCNAEILIGGAKG-PPDKVFIIGPVKQVRKAEAMLRG 336 (342)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 336 (342)
.+..++ +..+-....||+.+.+.+||+.|.+|..|.+..++.|.|-.... +++.|+|.|+...|.+|..++..
T Consensus 8 ~iv~~l-~~~vt~~i~Ip~~~ig~IIG~gG~~Ir~I~e~tg~~I~i~~~g~~~~~~V~I~G~~e~v~~A~~~I~~ 81 (95)
T 2ctm_A 8 RIVGEL-EQMVSEDVPLDHRVHARIIGARGKAIRKIMDEFKVDIRFPQSGAPDPNCVTVTGLPENVEEAIDHILN 81 (95)
T ss_dssp CCCCCT-TTCCCEEEECCTTTHHHHHCSSSCHHHHHHHHHTCEEECCCTTCSCTTEEEEESCHHHHHHHHHHHHH
T ss_pred HHHHhh-cccEEEEEEECHHHccccCCCCcchHHHHHHHHCCeEEecCCCCCCCcEEEEEcCHHHHHHHHHHHHH
Confidence 333333 44566778999999999999999999999999999999965321 45579999999999999998875
No 15
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=97.64 E-value=2.5e-05 Score=58.25 Aligned_cols=64 Identities=25% Similarity=0.447 Sum_probs=53.7
Q ss_pred hcCCCCCCCceeeccCCchHHHHHHhhcchhhcccCC----CCCC-eEEEecchhhHHHHHHHhhhccc
Q 019356 276 ILDVPPGKMGRIIGRRGSSILAIKESCNAEILIGGAK----GPPD-KVFIIGPVKQVRKAEAMLRGRML 339 (342)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 339 (342)
...||+.+.+.+||+.|.+|..|.+..+|.|-|-... +.++ .|.|.|+..++.+|..++...+-
T Consensus 6 ~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~ 74 (76)
T 1dtj_A 6 EMAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQRVT 74 (76)
T ss_dssp EEEEETTTHHHHHCSTTHHHHHHHHHHCCEEEECCTTCCSTTCCEEEEEEEESHHHHHHHHHHHHHHCC
T ss_pred EEEEChHHcceEECCCchHHHHHHHHhCCEEEECcCCCCCCCCceeEEEEEeCHHHHHHHHHHHHHHHh
Confidence 3568999999999999999999999999999998642 1222 58999999999999999987653
No 16
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=97.56 E-value=9.3e-06 Score=60.46 Aligned_cols=64 Identities=30% Similarity=0.494 Sum_probs=55.1
Q ss_pred hcCCCCCCCceeeccCCchHHHHHHhhcchhhcccCCCCCCe-EEEecchhhHHHHHHHhhhcccc
Q 019356 276 ILDVPPGKMGRIIGRRGSSILAIKESCNAEILIGGAKGPPDK-VFIIGPVKQVRKAEAMLRGRMLE 340 (342)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 340 (342)
..-||+.+.+.+||+.|.+|..|.+..+|.|-|-.. +.|++ |.|.|+...|.+|..++..++.|
T Consensus 8 ~i~ip~~~ig~iIGkgG~~Ik~I~~~tga~I~i~~~-~~~er~v~I~G~~~~v~~A~~~I~~~l~e 72 (73)
T 2axy_A 8 RLLMHGKEVGSIIGKKGESVKKMREESGARINISEG-NCPERIITLAGPTNAIFKAFAMIIDKLEE 72 (73)
T ss_dssp EEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECSS-CCSEEEEEEEECHHHHHHHHHHHHHHHHC
T ss_pred EEEEChhHeeeEECCCCHHHHHHHHHHCCEEEEecC-CCCcEEEEEEeCHHHHHHHHHHHHHHHhc
Confidence 345788888999999999999999999999999764 45555 88999999999999999887654
No 17
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=97.53 E-value=2.5e-05 Score=62.29 Aligned_cols=65 Identities=23% Similarity=0.311 Sum_probs=57.1
Q ss_pred hhhcCCCCCCCceeeccCCchHHHHHHhhcchhhcccCCCCCCeEEEecchhhHHHHHHHhhhcc
Q 019356 274 LSILDVPPGKMGRIIGRRGSSILAIKESCNAEILIGGAKGPPDKVFIIGPVKQVRKAEAMLRGRM 338 (342)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (342)
.....||+.+.+.+||++|.+|..|.+..++.|-|.-....++.|+|.|+...|.+|..++...+
T Consensus 18 ~~~i~Ip~~~ig~IIG~gG~~Ir~I~eetg~~I~I~~~g~~~~~V~I~G~~e~v~~A~~~I~~i~ 82 (104)
T 2ctk_A 18 TIEVEVPFDLHRYVIGQKGSGIRKMMDEFEVNIHVPAPELQSDIIAITGLAANLDRAKAGLLERV 82 (104)
T ss_dssp EEEEECCHHHHHHHHCSSSHHHHHHHHHTCCEEECCCTTTTCCEEEEEECHHHHHHHHHHHHHHH
T ss_pred EEEEEEChHHccceeCCCchHHHHHHHHHCCEEEecCCCCCcceEEEEcCHHHHHHHHHHHHHHH
Confidence 34678999999999999999999999999999999765445679999999999999999987654
No 18
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=97.49 E-value=4e-05 Score=58.24 Aligned_cols=65 Identities=28% Similarity=0.467 Sum_probs=54.0
Q ss_pred hcCCCCCCCceeeccCCchHHHHHHhhcchhhcccCC-CCCC-eEEEecchhhHHHHHHHhhhcccc
Q 019356 276 ILDVPPGKMGRIIGRRGSSILAIKESCNAEILIGGAK-GPPD-KVFIIGPVKQVRKAEAMLRGRMLE 340 (342)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 340 (342)
...||+.+++.+||+.|.+|..|.+..+|.|-|-... +.++ .|.|.|+..+|.+|..++...+-+
T Consensus 10 ~i~Vp~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~ 76 (82)
T 1zzk_A 10 QVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYLLQNSVKQ 76 (82)
T ss_dssp EEEEETTTGGGGTCGGGHHHHHHHHHHCCEEEECCTTSCSSEEEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred EEEEChHhcCeeECCCchHHHHHHHHHCCEEEEcCCCCCCCceEEEEEeCHHHHHHHHHHHHHHHHh
Confidence 4578999999999999999999999999999986431 2222 599999999999999999876543
No 19
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=97.48 E-value=2.8e-05 Score=61.01 Aligned_cols=68 Identities=26% Similarity=0.343 Sum_probs=58.5
Q ss_pred hhhhhhhcCCCCCCCceeeccCCchHHHHHHhh-cchhhcccCCCCCCeEEEecchhhHHHHHHHhhhc
Q 019356 270 EEEILSILDVPPGKMGRIIGRRGSSILAIKESC-NAEILIGGAKGPPDKVFIIGPVKQVRKAEAMLRGR 337 (342)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (342)
.+.+-....|||.+.+.+||+.|.+|..|.+.+ ++.|-|--...+.|+|+|-||.+.|.+|.+++..-
T Consensus 14 ~~~vt~~i~Ip~~~i~~iIG~gGk~Ir~I~eetggv~I~i~~~g~~~~~V~I~G~~~~v~~A~~~I~~i 82 (95)
T 2ctj_A 14 ANIAEVEVSIPAKLHNSLIGTKGRLIRSIMEECGGVHIHFPVEGSGSDTVVIRGPSSDVEKAKKQLLHL 82 (95)
T ss_dssp CSSCCEEEECCHHHHHHHHCSSSHHHHHHHHHHTSCEEECCCTTTTCCEEEEESCHHHHHHHHHHHHHH
T ss_pred hhcEEEEEEECHHHHhhhCCCCchhHHHHHHHcCCCEEEeCCCCCCcceEEEEcCHHHHHHHHHHHHHH
Confidence 445566788999999999999999999999999 99999965444567999999999999999998763
No 20
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=97.47 E-value=8.7e-05 Score=57.89 Aligned_cols=67 Identities=16% Similarity=0.275 Sum_probs=57.2
Q ss_pred hhhhhcCCCCCCCceeeccCCchHHHHHHhhcchhhcccCCCCCCeEEEecchhhHHHHHHHhhhcc
Q 019356 272 EILSILDVPPGKMGRIIGRRGSSILAIKESCNAEILIGGAKGPPDKVFIIGPVKQVRKAEAMLRGRM 338 (342)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (342)
++-....||+.+.+.+||+.|.+|..|.+..++.|-|-....+.+.|.|.|+...|.+|..++...+
T Consensus 16 ~~t~~i~Ip~~~ig~IIG~gG~~Ik~I~~etg~~I~i~~~~~~~~~V~I~G~~e~v~~A~~~I~~i~ 82 (94)
T 2cte_A 16 QASATVAIPKEHHRFVIGKNGEKLQDLELKTATKIQIPRPDDPSNQIKITGTKEGIEKARHEVLLIS 82 (94)
T ss_dssp CEEEEEECCTTTHHHHHCSSSCHHHHHHHHTTCCCBCCCTTSSCCEEEEEECHHHHHHHHHHHHHHH
T ss_pred ceEEEEEEChHHeeeeECCCChhHHHHHHHHCCEEEeCCCCCCCCeEEEEECHHHHHHHHHHHHHHh
Confidence 3456778999999999999999999999999999999654334568999999999999999987644
No 21
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=97.43 E-value=4.1e-05 Score=60.86 Aligned_cols=65 Identities=29% Similarity=0.407 Sum_probs=55.4
Q ss_pred hhcCCCCCCCceeeccCCchHHHHHHhhcchhhcccCCCC---CC-eEEEecchhhHHHHHHHhhhccc
Q 019356 275 SILDVPPGKMGRIIGRRGSSILAIKESCNAEILIGGAKGP---PD-KVFIIGPVKQVRKAEAMLRGRML 339 (342)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~ 339 (342)
....||+.+++++||+.|.+|..|.+..+|.|-|.....+ +| .|.|.|+.++|.+|..++...+-
T Consensus 17 ~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~~~V~I~G~~~~v~~A~~~I~~~i~ 85 (104)
T 1we8_A 17 EQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGTLLLSRLIKISGTQKEVAAAKHLILEKVS 85 (104)
T ss_dssp EEEEEETTTHHHHHTTTSHHHHHHHHHHCCEEEECCSSCCSSSSEEEEEEEEEHHHHHHHHHHHHHHHH
T ss_pred EEEEEChhheeeeECCCCHHHHHHHHHHCCEEEEecCCCCCCCCcceEEEEcCHHHHHHHHHHHHHHHh
Confidence 4567899999999999999999999999999999864433 24 48899999999999999887653
No 22
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=97.43 E-value=2.3e-05 Score=58.64 Aligned_cols=64 Identities=31% Similarity=0.518 Sum_probs=52.8
Q ss_pred hcCCCCCCCceeeccCCchHHHHHHhhcchhhcccCC-CCCCe-EEEecchhhHHHHHHHhhhccc
Q 019356 276 ILDVPPGKMGRIIGRRGSSILAIKESCNAEILIGGAK-GPPDK-VFIIGPVKQVRKAEAMLRGRML 339 (342)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 339 (342)
...||+.+++.+||+.|.+|..|.+..+|.|-|-.+. +.+|+ |.|.|+..+|.+|..++...+-
T Consensus 8 ~i~Ip~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~ 73 (76)
T 2p2r_A 8 ELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVRLS 73 (76)
T ss_dssp EEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCCCTTCSEEEEEEEECHHHHHHHHHHHHHHHT
T ss_pred EEEEChHHcceEECCCChHHHHHHHHHCCEEEEcCCCCCCCeEEEEEEeCHHHHHHHHHHHHHHHH
Confidence 3467888889999999999999999999999997631 12244 8899999999999999987653
No 23
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=97.43 E-value=8.6e-05 Score=56.74 Aligned_cols=64 Identities=27% Similarity=0.434 Sum_probs=53.7
Q ss_pred hhcCCCCCCCceeeccCCchHHHHHHhhcchhhcccCC---CCCCe-EEEecchhhHHHHHHHhhhcc
Q 019356 275 SILDVPPGKMGRIIGRRGSSILAIKESCNAEILIGGAK---GPPDK-VFIIGPVKQVRKAEAMLRGRM 338 (342)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~ 338 (342)
....||+.+.+++||+.|.+|..|.+..+|.|-|.... +..+| |.|.|....+.+|..++...+
T Consensus 16 ~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~er~v~I~G~~~~v~~A~~~I~~i~ 83 (85)
T 2opv_A 16 QEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIGDPYKVQQACEMVMDIL 83 (85)
T ss_dssp EEEEECTTTHHHHHTTTTHHHHHHHHHHTCEEEECSSSCSSTTSCEEEEEEECHHHHHHHHHHHHHHH
T ss_pred EEEEeChhheeeeECCCCHHHHHHHHHHCCEEEEcCCCCCCCCCceEEEEEeCHHHHHHHHHHHHHHh
Confidence 35678999999999999999999999999999997632 22456 999999999999999987543
No 24
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=97.36 E-value=0.00015 Score=56.92 Aligned_cols=63 Identities=27% Similarity=0.358 Sum_probs=54.6
Q ss_pred hhhcCCCCCCCceeeccCCchHHHHHHhhcchhhcccCCC----CCCeEEEecchhhHHHHHHHhhhc
Q 019356 274 LSILDVPPGKMGRIIGRRGSSILAIKESCNAEILIGGAKG----PPDKVFIIGPVKQVRKAEAMLRGR 337 (342)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 337 (342)
-....|||.+.+.+||+.|++|..|.+..++.|.|.- .+ +.+.|.|.|+.+.+.+|..++..-
T Consensus 18 ~~~i~Ip~~~ig~IIGkgG~~Ik~I~~etg~~I~i~~-~g~~~~~~~~V~I~G~~e~v~~A~~~I~~i 84 (97)
T 2ctl_A 18 KLSVTVDPKYHPKIIGRKGAVITQIRLEHDVNIQFPD-KDDGNQPQDQITITGYEKNTEAARDAILRI 84 (97)
T ss_dssp EEEEECCTTTHHHHSCSSSCHHHHHHHHHTCEEECCC-TTTCSSCSSEEEEESCHHHHHHHHHHHHHH
T ss_pred eEEEEECHHHhhhcCCCCchhHHHHHHHHCCEEEecC-CCCCCCCccEEEEEeCHHHHHHHHHHHHHH
Confidence 3567899999999999999999999999999999964 34 346899999999999999988763
No 25
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=97.35 E-value=2.8e-05 Score=59.72 Aligned_cols=62 Identities=26% Similarity=0.483 Sum_probs=52.2
Q ss_pred cCCCCCCCceeeccCCchHHHHHHhhcchhhcccCC----CCCC-eEEEecchhhHHHHHHHhhhcc
Q 019356 277 LDVPPGKMGRIIGRRGSSILAIKESCNAEILIGGAK----GPPD-KVFIIGPVKQVRKAEAMLRGRM 338 (342)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-~~~~~~~~~~~~~~~~~~~~~~ 338 (342)
..||+.+++.+||+.|.+|..|.+..+|.|-|-... |.++ .|.|.|+..++.+|..++...+
T Consensus 7 i~IP~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~g~~~r~v~I~G~~~~v~~A~~~I~~~i 73 (87)
T 1ec6_A 7 IAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQRV 73 (87)
T ss_dssp EEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBSTTSCEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred EEEChHHcCeeECCCcHhHHHHHHHhCCEEEEccCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHH
Confidence 457888889999999999999999999999998632 2222 5999999999999999988764
No 26
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=97.34 E-value=4.7e-05 Score=57.80 Aligned_cols=64 Identities=30% Similarity=0.530 Sum_probs=53.5
Q ss_pred hcCCCCCCCceeeccCCchHHHHHHhhcchhhcccC-CCCCC-eEEEecchhhHHHHHHHhhhccc
Q 019356 276 ILDVPPGKMGRIIGRRGSSILAIKESCNAEILIGGA-KGPPD-KVFIIGPVKQVRKAEAMLRGRML 339 (342)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 339 (342)
..-||+.+++.+||+.|.+|..|.+..+|.|-|-.. .+..| .|.|.|+..+|.+|..++...+-
T Consensus 9 ~i~Ip~~~vg~IIGkgG~~Ik~I~~~sga~I~i~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~ 74 (82)
T 1wvn_A 9 ELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINARLS 74 (82)
T ss_dssp EEEEEGGGHHHHHCGGGHHHHHHHHHHCCEEEECCCCTTCSEEEEEEEECHHHHHHHHHHHHHHTC
T ss_pred EEEEchHhccceeCCCchhHHHHHHHhCCEEEEecCCCCCCceEEEEEcCHHHHHHHHHHHHHHHH
Confidence 456788899999999999999999999999999753 12223 48899999999999999987654
No 27
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=97.27 E-value=0.00015 Score=57.98 Aligned_cols=65 Identities=25% Similarity=0.423 Sum_probs=54.5
Q ss_pred hcCCCCCCCceeeccCCchHHHHHHhhcchhhcccCCCC----C-CeEEEecchhhHHHHHHHhhhcccc
Q 019356 276 ILDVPPGKMGRIIGRRGSSILAIKESCNAEILIGGAKGP----P-DKVFIIGPVKQVRKAEAMLRGRMLE 340 (342)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (342)
...||+.+++.+||+.|.+|..|.+...|.|-|-....| . ..|.|.|...+|.+|..++...+-+
T Consensus 10 ~i~IP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~~~~~~~r~V~I~G~~e~v~~A~~~I~~~i~e 79 (107)
T 2hh2_A 10 TFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFIIRGSPQQIDHAKQLIEEKIEG 79 (107)
T ss_dssp EEEEEGGGTTTTSTTTTCHHHHHHHHSSSEEEECCCCCTTCCTTEEEEEEESCHHHHHHHHHHHHHHSCS
T ss_pred EEEECHHHcCccCCCCcHHHHHHHHHhCCEEEEcCccCCCCCCCceEEEEECCHHHHHHHHHHHHHHHhc
Confidence 456888899999999999999999999999999764322 1 3488999999999999999876643
No 28
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=97.16 E-value=4.8e-05 Score=58.71 Aligned_cols=67 Identities=27% Similarity=0.454 Sum_probs=54.4
Q ss_pred hhhcCCCCCCCceeeccCCchHHHHHHhhcchhhcccCC-CCCC-eEEEecchhhHHHHHHHhhhcccc
Q 019356 274 LSILDVPPGKMGRIIGRRGSSILAIKESCNAEILIGGAK-GPPD-KVFIIGPVKQVRKAEAMLRGRMLE 340 (342)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 340 (342)
.....||+.+.+.+||+.|.+|..|.+..+|.|-|-... +.++ .|.|.|+..+|.+|..++...+-+
T Consensus 15 ~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~v~I~G~~e~v~~A~~~I~~~i~e 83 (89)
T 1j5k_A 15 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYLLQNSVKQ 83 (89)
T ss_dssp EEEEEEEHHHHHHHHCGGGHHHHHHHHHTCCEEEECSCCSSSSEEEEEEEEEHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEChhhcceeECCCCHhHHHHHHHhCCeEEecCCCCCCCccEEEEEcCHHHHHHHHHHHHHHHHh
Confidence 344568888899999999999999999999999996421 1223 488999999999999999876654
No 29
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=97.15 E-value=0.00012 Score=57.16 Aligned_cols=68 Identities=22% Similarity=0.382 Sum_probs=55.7
Q ss_pred hhhhcCCCCCCCceeeccCCchHHHHHHhhcchhhcccCCCC---CCe-EEEecchhhHHHHHHHhhhcccc
Q 019356 273 ILSILDVPPGKMGRIIGRRGSSILAIKESCNAEILIGGAKGP---PDK-VFIIGPVKQVRKAEAMLRGRMLE 340 (342)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~ 340 (342)
......||+.+++++||+.|.+|..|.+...|.|-|-....+ +++ |.|.|...+|.+|..++...+-+
T Consensus 15 ~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~ 86 (94)
T 1x4m_A 15 AVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITGDPYKVQQAKEMVLELIRD 86 (94)
T ss_dssp EEEEEEECHHHHHHHSCSSSSHHHHHHHHHTSEEEECCSCCCSSCSCEEEEEEECTTTHHHHHHHHHHHHCC
T ss_pred EEEEEEEChhhcceEECCCCHHHHHHHHHHCCeEEecCCCCCCCCCceEEEEEeCHHHHHHHHHHHHHHHhc
Confidence 345677899999999999999999999999999998753221 233 88999999999999999876543
No 30
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=97.11 E-value=6.7e-05 Score=58.29 Aligned_cols=67 Identities=28% Similarity=0.477 Sum_probs=55.1
Q ss_pred hhhhcCCCCCCCceeeccCCchHHHHHHhhcchhhcccCC-CCCC-eEEEecchhhHHHHHHHhhhccc
Q 019356 273 ILSILDVPPGKMGRIIGRRGSSILAIKESCNAEILIGGAK-GPPD-KVFIIGPVKQVRKAEAMLRGRML 339 (342)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 339 (342)
+.....||+.+++.+||+.|.+|..|.+..+|.|-|-... +.++ .|.|.|+..+|.+|..++...+-
T Consensus 15 ~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~g~~~r~v~I~G~~e~v~~A~~~I~~~i~ 83 (92)
T 1x4n_A 15 MTEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLLDQIVE 83 (92)
T ss_dssp EEEEEEEEHHHHHHHHCSSSHHHHHHHHHSCCEEEECSCCTTCSEEEEEEEECHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEChHHcceeECCCchHHHHHHHHhCCEEEEcCCCCCCCccEEEEEeCHHHHHHHHHHHHHHHH
Confidence 4455678888899999999999999999999999997632 2233 58999999999999999887553
No 31
>2p1j_A POLIII, DNA polymerase III POLC-type; structural genomics, exonuclease, PSI-2, protein structure initiative; HET: DNA; 2.50A {Thermotoga maritima MSB8}
Probab=97.10 E-value=0.0036 Score=54.18 Aligned_cols=137 Identities=15% Similarity=0.103 Sum_probs=82.6
Q ss_pred cCCceEEEEeeeeCCC-CCCcEEEEEEEe--CCc-----EEEEEcCC-CC--------------------hhHHHhhHHH
Q 019356 47 ERQLVIGFDCEGVDLC-RHGSLCIMQLAF--PDA-----IYLVDAIQ-GG--------------------ETVVKACKPA 97 (342)
Q Consensus 47 ~~~~~Ia~D~E~~~~~-~~g~l~llQLa~--~~~-----~~liD~~~-l~--------------------~~~~~~L~~l 97 (342)
.....++||+|+.++. ..++++-|.... .+. ..+|.+.. +. .++...+..+
T Consensus 10 ~~~~~v~iD~ETTGl~~~~~~IieIg~v~~~~g~i~~~f~~lv~P~~~i~~~~~~i~GIt~~~l~~~~~~~~v~~~~~~~ 89 (186)
T 2p1j_A 10 GDATFVVLDFETTGLDPQVDEIIEIGAVKIQGGQIVDEYHTLIKPSREISRKSSEITGITQEMLENKRSIEEVLPEFLGF 89 (186)
T ss_dssp ---CEEEEEEEESCSCTTTCCEEEEEEEEEETTEEEEEEEEECBCSSCCCHHHHHHHCCCHHHHTTCCBHHHHHHHHHHH
T ss_pred cCCCEEEEEEECCCCCCCCCeEEEEEEEEEECCEEEEEEEEEECcCCCCCHHHhhhcCCCHHHHhcCCCHHHHHHHHHHH
Confidence 3457899999999875 345543333221 232 12343321 11 1234566677
Q ss_pred hcCCCceEEEeehhhhHHHHHH---hcCCcc--CceehHHHHHHhhccccCCCCCCCCCCcHHHhhcCccccCCccchhH
Q 019356 98 LESSYITKVIHDCKRDSEALYF---QFGIKL--HNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKE 172 (342)
Q Consensus 98 Le~~~i~KV~hd~k~Dl~~L~~---~~Gi~l--~~vfDtqlAa~LL~~~~~~~~L~~~~~sL~~Lv~~~~~Lg~~l~kK~ 172 (342)
+.+. ..|+||+.+|+.+|.+ .+|+.. ..++||+..++.+. .. ...+|..+++ .+|++...
T Consensus 90 l~~~--~lv~hn~~fD~~~L~~~~~~~g~~~~~~~~iDt~~l~~~~~-~~-------~~~~L~~l~~---~~gi~~~~-- 154 (186)
T 2p1j_A 90 LEDS--IIVAHNANFDYRFLRLWIKKVMGLDWERPYIDTLALAKSLL-KL-------RSYSLDSVVE---KLGLGPFR-- 154 (186)
T ss_dssp SSSC--EEEETTHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHT-CC-------SCCSHHHHHH---HTTCCSTT--
T ss_pred HCCC--EEEEECcHHHHHHHHHHHHHcCCCCCCCCEEeHHHHHHHHh-hc-------CCCCHHHHHH---HcCCCCCC--
Confidence 7653 4599999999999864 356654 35899988776654 21 1468899986 46765431
Q ss_pred HHHHHhcCCCCCCCCCCCcHHHHHHHHHHhHHHHHHHHHHHHHHhccc
Q 019356 173 EVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQS 220 (342)
Q Consensus 173 ~~~~l~~~~~~dW~~RPLs~~ql~YAA~Da~~Ll~L~~~L~~~L~~~g 220 (342)
...|..||..+..|+..+.++.+++|
T Consensus 155 ----------------------~H~Al~Da~~t~~l~~~l~~~~~~~~ 180 (186)
T 2p1j_A 155 ----------------------HHRALDDARVTAQVFLRFVEMMKKEG 180 (186)
T ss_dssp ----------------------CCHHHHHHHHHHHHHHHHTTCC----
T ss_pred ----------------------CcCHHHHHHHHHHHHHHHHHHHHhhc
Confidence 12388999999999998876665544
No 32
>2f96_A Ribonuclease T; RNAse, RNT, RNAse T, tRNA hydrolase, SAD, PS protein structure initiative, midwest center for structural genomics; 2.09A {Pseudomonas aeruginosa} SCOP: c.55.3.5
Probab=97.04 E-value=0.0036 Score=55.78 Aligned_cols=87 Identities=18% Similarity=0.219 Sum_probs=61.4
Q ss_pred CceEEEeehhhhHHHHHH---hcCCc--c---CceehHHHHHHhhccccCCCCCCCCCCcHHHhhcCccccCCccchhHH
Q 019356 102 YITKVIHDCKRDSEALYF---QFGIK--L---HNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEE 173 (342)
Q Consensus 102 ~i~KV~hd~k~Dl~~L~~---~~Gi~--l---~~vfDtqlAa~LL~~~~~~~~L~~~~~sL~~Lv~~~~~Lg~~l~kK~~ 173 (342)
....|+||+.+|+.+|.+ .+|+. + ...+||+..++.+.+. .+|..|++ .+|+++... .
T Consensus 126 ~~~lV~hn~~FD~~fL~~~~~~~g~~~~p~~~~~~iDt~~l~~~~~~~----------~~L~~l~~---~~gi~~~~~-~ 191 (224)
T 2f96_A 126 RAILVGHNSSFDLGFLNAAVARTGIKRNPFHPFSSFDTATLAGLAYGQ----------TVLAKACQ---AAGMEFDNR-E 191 (224)
T ss_dssp EEEEEETTHHHHHHHHHHHHHHHTCCCCCEEEEEEEEHHHHHHHHHSC----------CSHHHHHH---HTTCCCCTT-S
T ss_pred CCEEEEeChhhhHHHHHHHHHHcCCCcCCccccceeeHHHHHHHHcCC----------CCHHHHHH---HcCCCcCCC-C
Confidence 345699999999998864 35765 1 2489999877655431 47888886 467764310 0
Q ss_pred HHHHhcCCCCCCCCCCCcHHHHHHHHHHhHHHHHHHHHHHHHHhccccHH
Q 019356 174 VRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWY 223 (342)
Q Consensus 174 ~~~l~~~~~~dW~~RPLs~~ql~YAA~Da~~Ll~L~~~L~~~L~~~g~~~ 223 (342)
..-|..||..+..|+..+.+++.+.|.|.
T Consensus 192 ---------------------~H~Al~Da~~ta~l~~~l~~~~~~~~~~~ 220 (224)
T 2f96_A 192 ---------------------AHSARYDTEKTAELFCGIVNRWKEMGGWM 220 (224)
T ss_dssp ---------------------CCCHHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred ---------------------CCChHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 01278999999999999999988766653
No 33
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=96.90 E-value=0.00053 Score=58.18 Aligned_cols=64 Identities=27% Similarity=0.432 Sum_probs=53.2
Q ss_pred hcCCCCCCCceeeccCCchHHHHHHhhcchhhcccC---CCCCCe-EEEecchhhHHHHHHHhhhccc
Q 019356 276 ILDVPPGKMGRIIGRRGSSILAIKESCNAEILIGGA---KGPPDK-VFIIGPVKQVRKAEAMLRGRML 339 (342)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 339 (342)
...||+.+++.+||++|++|..|.+.++|.|-|--. .+.+|+ |.|.|+...|.+|..++...+-
T Consensus 5 ~~~Vp~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~ii~ 72 (164)
T 2jvz_A 5 EIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIGDPYKVQQACEMVMDILR 72 (164)
T ss_dssp EEEECTTCHHHHTCTTTHHHHHHHHTSCSEEEECCCTTSSSSSCEEEEEEECHHHHHHHHHHHHHHTT
T ss_pred EEEechhheeEEECCChHHHHHHHHHhCCeEEEecCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHH
Confidence 356899999999999999999999999999988432 234565 8889999999999998877664
No 34
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=96.83 E-value=0.00036 Score=55.68 Aligned_cols=63 Identities=24% Similarity=0.439 Sum_probs=52.6
Q ss_pred hcCCCCCCCceeeccCCchHHHHHHhhcchhhcccCC-CCCC-eEEEecchhhHHHHHHHhhhcc
Q 019356 276 ILDVPPGKMGRIIGRRGSSILAIKESCNAEILIGGAK-GPPD-KVFIIGPVKQVRKAEAMLRGRM 338 (342)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~ 338 (342)
...||+.+++.+||+.|.+|..|.+..+|.|-|-... .-++ .|.|.|+..++.+|..++...+
T Consensus 14 ~i~Ip~~~iG~IIGkgG~~Ik~I~~~TGakI~I~~~~~~~~er~V~I~G~~e~v~~A~~~I~~ii 78 (106)
T 2hh3_A 14 DVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMGPPDRCEHAARIINDLL 78 (106)
T ss_dssp EEEEETTTHHHHHTTTTHHHHHHHHHHTCEEEECSSCSSSSEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred EEEECHHHcCccCCCCcHHHHHHHHHHCcEEEEecCCCCCceeEEEEEeCHHHHHHHHHHHHHHH
Confidence 5678999999999999999999999999999996422 1233 4899999999999999987654
No 35
>1wlj_A Interferon stimulated gene 20KDA; exoribonuclease, hydrolase; HET: U5P; 1.90A {Homo sapiens} SCOP: c.55.3.5
Probab=96.78 E-value=0.0038 Score=54.24 Aligned_cols=142 Identities=20% Similarity=0.152 Sum_probs=83.5
Q ss_pred CceEEEEeeeeCCCCCCcEEEEEEEe---CCcEE---EEEcCC-C----------C----------hhHHHhhHHHhcCC
Q 019356 49 QLVIGFDCEGVDLCRHGSLCIMQLAF---PDAIY---LVDAIQ-G----------G----------ETVVKACKPALESS 101 (342)
Q Consensus 49 ~~~Ia~D~E~~~~~~~g~l~llQLa~---~~~~~---liD~~~-l----------~----------~~~~~~L~~lLe~~ 101 (342)
...++||+|+.++...+.-.+++++. .++.. +|.+.. + . .++...|..++.+
T Consensus 5 ~~~vviD~ETTGl~~~~~~~iiei~~v~~~g~~i~~~lV~P~~~i~~~~~~i~GIt~~~l~~a~~~~~v~~~~~~~l~~- 83 (189)
T 1wlj_A 5 REVVAMDCEMVGLGPHRESGLARCSLVNVHGAVLYDKFIRPEGEITDYRTRVSGVTPQHMVGATPFAVARLEILQLLKG- 83 (189)
T ss_dssp -CEEEEEEEEEEETTTTEEEEEEEEEECTTCCEEEEEEEECSSCEEECCHHHHCCCHHHHTTCEEHHHHHHHHHHHHTT-
T ss_pred CeEEEEEeECcCcCCCCCceEEEEEEEeCCCCEEEeeEecCCCCCCccccCCCCCCHHHHcCCCCHHHHHHHHHHHHCC-
Confidence 46799999999875333223345543 23322 343321 1 0 1244567777865
Q ss_pred CceEEEeehhhhHHHHHHhcCCccCceehHHHHHHhhcc-ccCCCCCCCCCCcHHHhhcCccccCCccchhHHHHHHhcC
Q 019356 102 YITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEE-QEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQ 180 (342)
Q Consensus 102 ~i~KV~hd~k~Dl~~L~~~~Gi~l~~vfDtqlAa~LL~~-~~~~~~L~~~~~sL~~Lv~~~~~Lg~~l~kK~~~~~l~~~ 180 (342)
...|+||+.+|+.+|...+ ....++||+........ .... ....+|..|++ +++|++......
T Consensus 84 -~~lV~hn~~fD~~~L~~~~--~~~~~idt~~~~~~~~~~~~p~----~~~~~L~~l~~--~~lgi~~~~~~~------- 147 (189)
T 1wlj_A 84 -KLVVGHDLKHDFQALKEDM--SGYTIYDTSTDRLLWREAKLDH----CRRVSLRVLSE--RLLHKSIQNSLL------- 147 (189)
T ss_dssp -SEEEESSHHHHHHHTTCCC--TTCEEEEGGGCHHHHHHHTC---------CCHHHHHH--HHTCCCCSCCTT-------
T ss_pred -CEEEECCcHHHHHHHHHhC--CCCceechHhhhhhhhcccCCC----CCCccHHHHHH--HHcCCCCCCCCC-------
Confidence 3569999999999995332 22358899864322110 0000 02478999998 768876542000
Q ss_pred CCCCCCCCCCcHHHHHHHHHHhHHHHHHHHHHHHHHhcccc
Q 019356 181 DPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSL 221 (342)
Q Consensus 181 ~~~dW~~RPLs~~ql~YAA~Da~~Ll~L~~~L~~~L~~~g~ 221 (342)
. .-|..||..+..|+..+.+++++.+.
T Consensus 148 -~-------------H~Al~Da~ata~l~~~l~~~~~~~~~ 174 (189)
T 1wlj_A 148 -G-------------HSSVEDARATMELYQISQRIRARRGL 174 (189)
T ss_dssp -C-------------CCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred -C-------------cCcHHHHHHHHHHHHHHHHHHHHhhc
Confidence 0 12789999999999999888776543
No 36
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=96.71 E-value=0.0002 Score=60.80 Aligned_cols=64 Identities=28% Similarity=0.440 Sum_probs=53.8
Q ss_pred hcCCCCCCCceeeccCCchHHHHHHhhcchhhcccCCCCCCeEEEecchhhHHHHHHHhhhccc
Q 019356 276 ILDVPPGKMGRIIGRRGSSILAIKESCNAEILIGGAKGPPDKVFIIGPVKQVRKAEAMLRGRML 339 (342)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (342)
...||+.+++.+||++|.+|..|.+.+++.|-|-....|...|.|.|+...|.+|..++...|.
T Consensus 8 ~~~vp~~~~g~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~ 71 (160)
T 2jzx_A 8 RLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMIIDKLE 71 (160)
T ss_dssp EEEEEHHHHHHHHCGGGHHHHHHHHHHCSEEEEECCTTTEEEEEEEEEHHHHHHHHHHHHHHHH
T ss_pred EEEEchhheeeeECCCcHHHHHHHHHHCCEEEEcCCCCCceEEEEEeCHHHHHHHHHHHHHHHH
Confidence 4567888899999999999999999999999997754444458899999999999998876553
No 37
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=96.65 E-value=0.00077 Score=57.25 Aligned_cols=62 Identities=27% Similarity=0.485 Sum_probs=52.9
Q ss_pred hcCCCCCCCceeeccCCchHHHHHHhhcchhhcccCCCCCC-----eEEEecchhhHHHHHHHhhhcc
Q 019356 276 ILDVPPGKMGRIIGRRGSSILAIKESCNAEILIGGAKGPPD-----KVFIIGPVKQVRKAEAMLRGRM 338 (342)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~ 338 (342)
...||+...+.+||+.|.+|..|.+..+|.|.|-. .+.|+ .|.|.|....|.+|..++...+
T Consensus 88 ~i~vp~~~~g~iIGkgG~~I~~i~~~tga~I~i~~-~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i 154 (163)
T 3krm_A 88 HIRVPASAAGRVIGKGGKTVNELQNLTAAEVVVPR-DQTPDENDQVIVKIIGHFYASQMAQRKIRDIL 154 (163)
T ss_dssp EEEEETTTHHHHHCGGGHHHHHHHHHHCCEEECCT-TCCCCTTSEEEEEEEECHHHHHHHHHHHHHHH
T ss_pred EEEcChhheeeEEcCCChHHHHHHHHhCCeEEECC-CCCCCCCCceEEEEEeCHHHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999965 33232 5889999999999999987654
No 38
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=96.61 E-value=0.001 Score=56.42 Aligned_cols=63 Identities=24% Similarity=0.440 Sum_probs=52.9
Q ss_pred hcCCCCCCCceeeccCCchHHHHHHhhcchhhcccCCCCC-C-eEEEecchhhHHHHHHHhhhcc
Q 019356 276 ILDVPPGKMGRIIGRRGSSILAIKESCNAEILIGGAKGPP-D-KVFIIGPVKQVRKAEAMLRGRM 338 (342)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~ 338 (342)
...||+.+.+.+||+.|.+|..|.+..+|.|.|....+.. | .|.|.|+..+|.+|..++...+
T Consensus 94 ~i~vp~~~~g~iIGk~G~~I~~i~~~tg~~I~i~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i 158 (164)
T 2jvz_A 94 DVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMGPPDRCEHAARIINDLL 158 (164)
T ss_dssp CCEEETTTHHHHHCSSSHHHHHHHHHTCCEEEECCCCTTSSEEEEEEESCHHHHHHHHHHHHHHH
T ss_pred EEEEChhhccccCCCCcHhHHHHHHHHCCeEEEeCCCCCCCcEEEEEEcCHHHHHHHHHHHHHHH
Confidence 4558899999999999999999999999999997643322 3 5899999999999999987543
No 39
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=96.52 E-value=0.00091 Score=57.51 Aligned_cols=63 Identities=30% Similarity=0.450 Sum_probs=53.3
Q ss_pred hhhcCCCCCCCceeeccCCchHHHHHHhhcchhhcccCCCCC------CeEEEecchhhHHHHHHHhhhc
Q 019356 274 LSILDVPPGKMGRIIGRRGSSILAIKESCNAEILIGGAKGPP------DKVFIIGPVKQVRKAEAMLRGR 337 (342)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~ 337 (342)
.....||+.+.+.+||+.|.+|..|.+...|.|-|-.. .|| ..|.|.|+..+|.+|..++..+
T Consensus 105 ~~~i~vp~~~~g~iIGkgG~~Ik~I~~~tga~I~i~~~-~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~ 173 (174)
T 1j4w_A 105 EFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRN-PPPNADPNMKLFTIRGTPQQIDYARQLIEEK 173 (174)
T ss_dssp EEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEEEECC-CTTTSCTTEEEEEEECCHHHHHHHHHHHHHH
T ss_pred EEEEEEChHHcCeeECCCchHHHHHHHHHCCEEEECCC-CCCCCCCCceEEEEECCHHHHHHHHHHHHHh
Confidence 34567899999999999999999999999999999763 333 3488999999999999998754
No 40
>3mxm_B Three prime repair exonuclease 1; RNAse H-like fold, polyproline type II helix, hydrolase-DNA; HET: DNA; 1.75A {Mus musculus} SCOP: c.55.3.5 PDB: 3mxj_B 2ioc_B 3mxi_B* 3b6o_A* 2o4g_A* 3b6p_A* 2o4i_A 2oa8_A
Probab=96.45 E-value=0.015 Score=52.57 Aligned_cols=100 Identities=17% Similarity=0.087 Sum_probs=65.5
Q ss_pred HHHhhHHHhcCC--CceEEEeeh-hhhHHHHHH---hcCCcc--C--ceehHHHHHHhhccc---cCCCCCCCCCCcHHH
Q 019356 90 VVKACKPALESS--YITKVIHDC-KRDSEALYF---QFGIKL--H--NVVDTQIAYSLIEEQ---EGRKRSPDDYISFVG 156 (342)
Q Consensus 90 ~~~~L~~lLe~~--~i~KV~hd~-k~Dl~~L~~---~~Gi~l--~--~vfDtqlAa~LL~~~---~~~~~L~~~~~sL~~ 156 (342)
+...|..++.+- ...-|+||+ .+|...|.+ .+|+.. . ..+||+..++.+... ..+... ..++|..
T Consensus 104 v~~~~~~fl~~~~~~~~lVaHNav~FD~~fL~~~~~r~g~~~~~~~~~~iDtl~l~r~l~~~~~p~~~~~~--~~~~L~~ 181 (242)
T 3mxm_B 104 LAILLRAFLQRQPQPCCLVAHNGDRYDFPLLQTELARLSTPSPLDGTFCVDSIAALKALEQASSPSGNGSR--KSYSLGS 181 (242)
T ss_dssp HHHHHHHHHHTSCSSEEEEETTTTTTHHHHHHHHHHTSSSCCTTTTCEEEEHHHHHHHHHHHHCC--------CCCSHHH
T ss_pred HHHHHHHHHhcCCCCCEEEEcCChHhhHHHHHHHHHHcCCCCCccCCeEeehHHHHHHHHhhcCccccCCC--CCcCHHH
Confidence 445566677761 145699996 999999864 357663 2 478999877744311 000001 2578999
Q ss_pred hhcCccccCCccchhHHHHHHhcCCCCCCCCCCCcHHHHHHHHHHhHHHHHHHHHHHHHHh
Q 019356 157 LLADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLN 217 (342)
Q Consensus 157 Lv~~~~~Lg~~l~kK~~~~~l~~~~~~dW~~RPLs~~ql~YAA~Da~~Ll~L~~~L~~~L~ 217 (342)
|++ +++|++... .+ + |..||.++..|+..+.+++.
T Consensus 182 l~~--~~~gi~~~~-~H----------~-------------Al~Da~ata~l~~~~~~~~~ 216 (242)
T 3mxm_B 182 IYT--RLYWQAPTD-SH----------T-------------AEGDDLTLLSICQWKPQALL 216 (242)
T ss_dssp HHH--HHHSSCCSS-TT----------S-------------HHHHHHHHHHHHTSSHHHHH
T ss_pred HHH--HHhCCCCCC-Cc----------C-------------hHHHHHHHHHHHHHHHHHHH
Confidence 998 788886541 11 1 78899999999988876654
No 41
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=96.38 E-value=0.00047 Score=58.42 Aligned_cols=65 Identities=28% Similarity=0.438 Sum_probs=53.1
Q ss_pred hcCCCCCCCceeeccCCchHHHHHHhhcchhhcccCC--CCCC-eEEEecchhhHHHHHHHhhhcccc
Q 019356 276 ILDVPPGKMGRIIGRRGSSILAIKESCNAEILIGGAK--GPPD-KVFIIGPVKQVRKAEAMLRGRMLE 340 (342)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 340 (342)
...||+...+.+||+.|.+|..|.+.++|.|-|-... +..| .|.|.|+..+|.+|..++...+.|
T Consensus 92 ~i~vp~~~~g~iIGkgG~~Ik~i~~~tga~I~i~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~e 159 (160)
T 2jzx_A 92 RLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLE 159 (160)
T ss_dssp EEEEEHHHHHHHHCGGGHHHHHHHHHHSSEECCCCCCSTTCCEEEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred EEEEChhheeeEECCCCHHHHHHHHHhCCeEEECCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhc
Confidence 4567778889999999999999999999999996521 1123 388999999999999998876654
No 42
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=96.35 E-value=0.00074 Score=57.36 Aligned_cols=63 Identities=27% Similarity=0.451 Sum_probs=52.7
Q ss_pred cCCCCCCCceeeccCCchHHHHHHhhcchhhcccC--CCCCCe-EEEecchhhHHHHHHHhhhccc
Q 019356 277 LDVPPGKMGRIIGRRGSSILAIKESCNAEILIGGA--KGPPDK-VFIIGPVKQVRKAEAMLRGRML 339 (342)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 339 (342)
.-||+.+++.+||++|.+|..|.+.++|.|-|--. .+.+++ |.|.|+..++.+|..++...|.
T Consensus 7 ~~ip~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~r~v~I~G~~e~v~~A~~~I~~~~~ 72 (163)
T 3krm_A 7 VFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKVRMVIITGPPEAQFKAQGRIYGKLK 72 (163)
T ss_dssp EEEEGGGHHHHHCGGGHHHHHHHHHHTCEEEECCCSSTTCSEEEEEEEECHHHHHHHHHHHHHHHH
T ss_pred EEechhhcceeECCCcHHHHHHHHHHCCeEEEcCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHh
Confidence 45788899999999999999999999999999542 344554 8899999999999988877654
No 43
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=96.29 E-value=0.00069 Score=58.30 Aligned_cols=62 Identities=23% Similarity=0.442 Sum_probs=51.3
Q ss_pred cCCCCCCCceeeccCCchHHHHHHhhcchhhcccC-CCCCCe-EEEecchhhHHHHHHHhhhcc
Q 019356 277 LDVPPGKMGRIIGRRGSSILAIKESCNAEILIGGA-KGPPDK-VFIIGPVKQVRKAEAMLRGRM 338 (342)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 338 (342)
.-||+.+++.+||++|.+|..|.+.++|.|-|-.. .+.+|+ |.|.|+...|.+|..++...+
T Consensus 7 ~~vp~~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~~ 70 (174)
T 1j4w_A 7 VPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPERIAQITGPPDRAQHAAEIITDLL 70 (174)
T ss_dssp EEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEEECCTTSCSEEEEEEEECHHHHHHHHHHHHHHH
T ss_pred EEEChhheeeeecCCchHHHHHHHHhCCEEEEecCCCCCCccEEEEEeCHHHHHHHHHHHHHHH
Confidence 45778888999999999999999999999999632 244556 688899999999999886544
No 44
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=96.19 E-value=0.0008 Score=58.04 Aligned_cols=68 Identities=28% Similarity=0.347 Sum_probs=55.9
Q ss_pred hhhhcCCCCCCCceeeccCCchHHHHHHhhcchhhcccCC-CC--C-CeEEEecchhhHHHHHHHhhhcccc
Q 019356 273 ILSILDVPPGKMGRIIGRRGSSILAIKESCNAEILIGGAK-GP--P-DKVFIIGPVKQVRKAEAMLRGRMLE 340 (342)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (342)
......||+.+.+.+||+.|.+|..|.+...|.|-|-... +| . ..|.|.|+..+|.+|..++..++-+
T Consensus 104 ~~~~i~Vp~~~vg~iIGkgG~~Ik~i~~~tga~I~i~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~e 175 (178)
T 2anr_A 104 NQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINLQNRVVTVSGEPEQNRKAVELIIQKIQE 175 (178)
T ss_dssp GEEEEEEEHHHHHHHHCGGGHHHHHHHHHSSCEEEECCCC----CCEEEEEEESSHHHHHHHHHHHHHHHHS
T ss_pred eEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEeCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHHh
Confidence 3456788898999999999999999999999999986532 11 2 3588999999999999999887654
No 45
>3u3y_B Three prime repair exonuclease 1; RNAse H fold, 3' exonuclease, homodimer, hydrolase-DNA compl; HET: BU1; 2.28A {Mus musculus} PDB: 3u6f_B*
Probab=96.02 E-value=0.04 Score=52.00 Aligned_cols=102 Identities=16% Similarity=0.052 Sum_probs=65.1
Q ss_pred HHHhhHHHhcCC--CceEEEee-hhhhHHHHHH---hcCCcc--C--ceehHHHHHH-hhccccCCCCCCCCCCcHHHhh
Q 019356 90 VVKACKPALESS--YITKVIHD-CKRDSEALYF---QFGIKL--H--NVVDTQIAYS-LIEEQEGRKRSPDDYISFVGLL 158 (342)
Q Consensus 90 ~~~~L~~lLe~~--~i~KV~hd-~k~Dl~~L~~---~~Gi~l--~--~vfDtqlAa~-LL~~~~~~~~L~~~~~sL~~Lv 158 (342)
+...|..++.+. ...-|+|| +.+|..+|.+ .+|+.. . ..+||+...+ +..............++|.+|+
T Consensus 104 v~~~l~~fL~~~~~~~vLVAHNga~FD~~FL~~el~r~Gl~~~~~~~~~iDTL~l~r~L~r~~~P~~~~~~~~~~L~~L~ 183 (314)
T 3u3y_B 104 LAILLRAFLQRQPQPCCLVAHNGDRYDFPLLQTELARLSTPSPLDGTFCVDSIAALKALEQASSPSGNGSRKSYSLGSIY 183 (314)
T ss_dssp HHHHHHHHHHTSCSSEEEEETTTTTTHHHHHHHHHHTSSSCCTTTTCEEEEHHHHHHHHHTTC-------CCCCSHHHHH
T ss_pred HHHHHHHHHhcCCCCcEEEEeCcHHHHHHHHHHHHHHcCCCCCCCCceEEeHHHHHHHHHHHhCccccccCCCCCHHHHH
Confidence 345556677762 24569999 8999999864 357664 2 2789998665 3321100000001257999999
Q ss_pred cCccccCCccchhHHHHHHhcCCCCCCCCCCCcHHHHHHHHHHhHHHHHHHHHHHHHHh
Q 019356 159 ADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLN 217 (342)
Q Consensus 159 ~~~~~Lg~~l~kK~~~~~l~~~~~~dW~~RPLs~~ql~YAA~Da~~Ll~L~~~L~~~L~ 217 (342)
+ +|+|++... .| + |..||.++..|+..+.+++.
T Consensus 184 ~--~l~gi~~~~-aH----------r-------------Al~DA~ata~lf~~l~~~~l 216 (314)
T 3u3y_B 184 T--RLYWQAPTD-SH----------T-------------AEGHVLTLLSICQWKPQALL 216 (314)
T ss_dssp H--HHHSSCCSC-SS----------S-------------HHHHHHHHHHHHHSSHHHHH
T ss_pred H--HhcCCCCCC-CC----------C-------------HHHHHHHHHHHHHHHHHHHH
Confidence 8 778876541 11 1 78899999999998876654
No 46
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=95.90 E-value=0.0015 Score=56.32 Aligned_cols=65 Identities=20% Similarity=0.453 Sum_probs=52.4
Q ss_pred hhcCCCCCCCceeeccCCchHHHHHHhhcchhhcccCC----CCCCe-EEEecchhhHHHHHHHhhhccc
Q 019356 275 SILDVPPGKMGRIIGRRGSSILAIKESCNAEILIGGAK----GPPDK-VFIIGPVKQVRKAEAMLRGRML 339 (342)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 339 (342)
-..-||+.+++.+||++|.+|..|.+..++.|-|-... +.+++ |.|.|+...|.+|..++...+.
T Consensus 8 ~~i~vp~~~ig~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~~~er~v~I~G~~~~v~~A~~~I~~~~~ 77 (178)
T 2anr_A 8 LKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTIEALNAVHGFIAEKIR 77 (178)
T ss_dssp EEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBCTTSSEEEEEEEECHHHHHHHHHHHHHHHT
T ss_pred EEEEEChhHeeeeECCCcHHHHHHHHHhCCeEEEecCCCCCCCCCCceEEEEeCHHHHHHHHHHHHHHHh
Confidence 34567888899999999999999999999999995432 34455 6778999999999888876543
No 47
>2gui_A DNA polymerase III epsilon subunit; DNA polymerase proofreading domain, transferase; HET: DNA U5P; 1.60A {Escherichia coli} SCOP: c.55.3.5 PDB: 1j54_A* 1j53_A* 2ido_A* 2xy8_A*
Probab=95.81 E-value=0.058 Score=46.56 Aligned_cols=92 Identities=17% Similarity=0.111 Sum_probs=60.5
Q ss_pred HHHhhHHHhcCCCceEEEeehhhhHHHHHH---hcCCc---c---CceehHHHHHHhhccccCCCCCCCCCCcHHHhhcC
Q 019356 90 VVKACKPALESSYITKVIHDCKRDSEALYF---QFGIK---L---HNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLAD 160 (342)
Q Consensus 90 ~~~~L~~lLe~~~i~KV~hd~k~Dl~~L~~---~~Gi~---l---~~vfDtqlAa~LL~~~~~~~~L~~~~~sL~~Lv~~ 160 (342)
+...+..++.+. ..|+||+.+|+.+|.+ .+|+. . ...+||+..++.+.+.. ..+|..|++
T Consensus 85 v~~~~~~~l~~~--~lv~hn~~fD~~~L~~~~~~~g~~~p~~~~~~~~iDt~~l~~~~~p~~--------~~~L~~l~~- 153 (194)
T 2gui_A 85 VADEFMDYIRGA--ELVIHNAAFDIGFMDYEFSLLKRDIPKTNTFCKVTDSLAVARKMFPGK--------RNSLDALCA- 153 (194)
T ss_dssp HHHHHHHHHTTS--EEEETTHHHHHHHHHHHHHHTCSCCCCGGGTSEEEEHHHHHHHHSTTS--------CCSHHHHHH-
T ss_pred HHHHHHHHHCCC--eEEEEchHHhHHHHHHHHHHcCCCCccccccCceeeHHHHHHHHcCCC--------CCCHHHHHH-
Confidence 345566777654 3589999999998864 35666 2 35899987666555431 358899986
Q ss_pred ccccCCccchhHHHHHHhcCCCCCCCCCCCcHHHHHHHHHHhHHHHHHHHHHHHHH
Q 019356 161 PRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKL 216 (342)
Q Consensus 161 ~~~Lg~~l~kK~~~~~l~~~~~~dW~~RPLs~~ql~YAA~Da~~Ll~L~~~L~~~L 216 (342)
++|++.... . ..+ |..||..+..|+..|.++.
T Consensus 154 --~~gi~~~~~-~--------~H~-------------Al~Da~~ta~l~~~l~~~~ 185 (194)
T 2gui_A 154 --RYEIDNSKR-T--------LHG-------------ALLDAQILAEVYLAMTGGQ 185 (194)
T ss_dssp --HTTCCCTTC-S--------SCC-------------HHHHHHHHHHHHHHHTC--
T ss_pred --HcCcCCCCC-C--------CCC-------------hHHHHHHHHHHHHHHHhcc
Confidence 467654310 0 011 7789999999998876443
No 48
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.72 E-value=0.0029 Score=48.06 Aligned_cols=62 Identities=19% Similarity=0.321 Sum_probs=50.6
Q ss_pred hhhcCCCCCCCceeeccCCchHHHHHHhhcchhhcccCCCCCCeEEEecchhhHHHHHHHhhh
Q 019356 274 LSILDVPPGKMGRIIGRRGSSILAIKESCNAEILIGGAKGPPDKVFIIGPVKQVRKAEAMLRG 336 (342)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (342)
.....||..+.+.+||+.|.+|..|-+..++.|-|-.. .....|-|.|....|.+|..++..
T Consensus 11 ~~~i~VP~~~vG~IIGkgG~tIk~Iqe~Tga~I~I~~~-~~~~~v~ItG~~e~v~~A~~~I~~ 72 (83)
T 2dgr_A 11 TIQVRVPYRVVGLVVGPKGATIKRIQQRTHTYIVTPGR-DKEPVFAVTGMPENVDRAREEIEA 72 (83)
T ss_dssp EEEEECCHHHHHHHHTTTTSSHHHHHHHTTCEEECCCS-SSCCEEEEEECTTTHHHHHHHHHH
T ss_pred EEEEEeChHHeeeeECCCchHHHHHHHHhCCeEEecCC-CCCCeEEEEcCHHHHHHHHHHHHH
Confidence 34567888889999999999999999999999998531 222347778999999999988875
No 49
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=95.57 E-value=0.0035 Score=48.53 Aligned_cols=61 Identities=25% Similarity=0.255 Sum_probs=50.6
Q ss_pred hhhcCCCCCCCceeeccCCchHHHHHHhhcch-hhcccCCCCCCeEEEecc-hhhHHHHHHHhhhc
Q 019356 274 LSILDVPPGKMGRIIGRRGSSILAIKESCNAE-ILIGGAKGPPDKVFIIGP-VKQVRKAEAMLRGR 337 (342)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 337 (342)
.....|||.+++.+||.+|.+|..|.+...+. |-|--. ...|+|.|+ ...+.+|.+++.+-
T Consensus 16 i~~i~I~~dkIg~vIG~gGk~Ik~I~e~tGv~~IdI~ed---dG~V~I~g~~~ea~~~A~~~I~~i 78 (91)
T 2cpq_A 16 HEEFVVREDLMGLAIGTHGSNIQQARKVPGVTAIELDED---TGTFRIYGESADAVKKARGFLEFV 78 (91)
T ss_dssp EEEEECCHHHHHHHHTTTTHHHHHHHTSTTEEEEEEETT---TTEEEEEESSHHHHHHHHHHHSCC
T ss_pred EEEEEEChHHhhhhcCCCcHHHHHHHHHhCCeEEEEEcC---CCEEEEEECCHHHHHHHHHHHHhh
Confidence 45678999999999999999999999999997 998531 247999994 55678999998764
No 50
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=95.56 E-value=0.0071 Score=47.70 Aligned_cols=61 Identities=25% Similarity=0.379 Sum_probs=48.9
Q ss_pred hhhcCCCCCCCceeeccCCchHHHHHHhh-cchhhcccCCCCCCeEEEecchhhHHHHHHHhhhc
Q 019356 274 LSILDVPPGKMGRIIGRRGSSILAIKESC-NAEILIGGAKGPPDKVFIIGPVKQVRKAEAMLRGR 337 (342)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (342)
-...+||+.--+.+||++|++|..|.+.+ ++.|. -|+ .-|.|.|-||.++|-+|.+.|..-
T Consensus 28 t~~i~vp~~~h~~IIG~~G~~Ik~i~~~~~~v~I~--fp~-~~~~ItI~G~~~~V~~a~~~I~~~ 89 (102)
T 2ctf_A 28 VSSVAAPSWLHRFIIGKKGQNLAKITQQMPKVHIE--FTE-GEDKITLEGPTEDVSVAQEQIEGM 89 (102)
T ss_dssp EEEEECCSTTHHHHHTTTTCHHHHHHHHCSSSEEE--ECS-SSCEEEEEECHHHHHHHHHHHHHH
T ss_pred EEEEEeCHHHHhhhcCCCCccHHHHHHHcCCcEEE--eCC-CCCEEEEECCHHHHHHHHHHHHHH
Confidence 35567876666889999999999999987 55554 444 468899999999999999988653
No 51
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=95.30 E-value=0.0041 Score=52.12 Aligned_cols=63 Identities=21% Similarity=0.483 Sum_probs=50.8
Q ss_pred hcCCCCCCCceeeccCCchHHHHHHhhcc-hhhcccCCCC--C--C---eEEEecchhhHHHHHHHhhhcc
Q 019356 276 ILDVPPGKMGRIIGRRGSSILAIKESCNA-EILIGGAKGP--P--D---KVFIIGPVKQVRKAEAMLRGRM 338 (342)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~--~---~~~~~~~~~~~~~~~~~~~~~~ 338 (342)
..-||+...+++||+.|.+|..+.+.+.+ .|-|-+...+ | + .|-|+|+..+|.+|..+|.-++
T Consensus 70 ~v~Vp~~~~g~~IGK~G~nIr~i~~~tG~~~I~i~~~~~~~~~~~~~~~~vtI~G~~~~v~~Ak~li~~~l 140 (144)
T 2qnd_A 70 VIQVPRNLVGKVIGKNGKLIQEIVDKSGVVRVRIEAENEKNVPQEEGMVPFVFVGTKDSIANATVLLDYHL 140 (144)
T ss_dssp EEEEEGGGHHHHHCGGGHHHHHHHHHHTCSEEEEEEECTTCCCCCTTEEEEEEEEEHHHHHHHHHHHHHHH
T ss_pred EEEECHHHcCeeECCCCHHHHHHHHHHCCEEEEEcCCCCCCccccCCeeEEEEEeCHHHHHHHHHHHHHHH
Confidence 34578888999999999999999999997 7877654322 1 2 2779999999999999987554
No 52
>1y97_A Three prime repair exonuclease 2; TREX2, hydrolase; 2.50A {Homo sapiens} SCOP: c.55.3.5
Probab=93.59 E-value=0.18 Score=44.79 Aligned_cols=100 Identities=24% Similarity=0.255 Sum_probs=64.9
Q ss_pred HHHhhHHHhcCC--CceEEEeeh-hhhHHHHHH---hcCCccC---ceehHHHHHHhhcccc---CC-CCCCCCCCcHHH
Q 019356 90 VVKACKPALESS--YITKVIHDC-KRDSEALYF---QFGIKLH---NVVDTQIAYSLIEEQE---GR-KRSPDDYISFVG 156 (342)
Q Consensus 90 ~~~~L~~lLe~~--~i~KV~hd~-k~Dl~~L~~---~~Gi~l~---~vfDtqlAa~LL~~~~---~~-~~L~~~~~sL~~ 156 (342)
+...|..+++.- ...-|+||+ .+|..+|.+ .+|+... ..+||+..++.+.... .+ ... ...+|..
T Consensus 99 v~~~l~~fl~~~~~~~~lVahN~~~FD~~fL~~~~~~~g~~~~~~~~~iDt~~l~~~~~~~~~p~~~~p~~--~~~~L~~ 176 (238)
T 1y97_A 99 VVRTLQAFLSRQAGPICLVAHNGFDYDFPLLCAELRRLGARLPRDTVCLDTLPALRGLDRAHSHGTRARGR--QGYSLGS 176 (238)
T ss_dssp HHHHHHHHHTTSCSSEEEEETTTTTTHHHHHHHHHHHHTCCCCTTCEEEEHHHHHHHHHHHC------------CCSHHH
T ss_pred HHHHHHHHHHhCCCCCEEEecCchhhhHHHHHHHHHHcCCCCCCCCEEEEHHHHHHHHHhccCccccCCCC--CCCCHHH
Confidence 345667777762 145699999 999998864 3676652 4799987766654100 00 000 2468899
Q ss_pred hhcCccccCCccchhHHHHHHhcCCCCCCCCCCCcHHHHHHHHHHhHHHHHHHHHHHHHHh
Q 019356 157 LLADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLN 217 (342)
Q Consensus 157 Lv~~~~~Lg~~l~kK~~~~~l~~~~~~dW~~RPLs~~ql~YAA~Da~~Ll~L~~~L~~~L~ 217 (342)
+++ +++|++... . ..|..||..+..++..+.+++.
T Consensus 177 l~~--~~~gi~~~~-~-----------------------H~Al~Da~~ta~l~~~l~~~~~ 211 (238)
T 1y97_A 177 LFH--RYFRAEPSA-A-----------------------HSAEGDVHTLLLIFLHRAAELL 211 (238)
T ss_dssp HHH--HHHSSCCC---------------------------CHHHHHHHHHHHHHHTHHHHH
T ss_pred HHH--HHhCCCCcc-C-----------------------ccHHHHHHHHHHHHHHHHHHHH
Confidence 987 678865431 1 2288999999999999887664
No 53
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=92.96 E-value=0.027 Score=47.05 Aligned_cols=57 Identities=23% Similarity=0.247 Sum_probs=44.2
Q ss_pred hcCCCCCCCceeeccCCchHHHHHHhhcchhhcccCCCCCCeEEEecc-hhhHHHHHHHh
Q 019356 276 ILDVPPGKMGRIIGRRGSSILAIKESCNAEILIGGAKGPPDKVFIIGP-VKQVRKAEAML 334 (342)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 334 (342)
.+.||.+.+|.+||++|++|.+|.+.++.+ |--.+.-|+++.+.|. ...|.+|+++|
T Consensus 7 ~~~Vp~~~vG~~IG~~G~~I~~i~~e~gI~--ii~~~~~~~~~i~~~~~p~~v~~~~~~l 64 (144)
T 2qnd_A 7 QFIVREDLMGLAIGTHGANIQQARKVPGVT--AIDLDEDTCTFHIYGEDQDAVKKARSFL 64 (144)
T ss_dssp EEECCGGGHHHHHCGGGHHHHHHHTSTTEE--EEEEETTTTEEEEEESSHHHHHHHHHHH
T ss_pred EEEECCcceeeEECCChhHHHHHHHHHCCe--EeccCCCchheeeccCCHHHHHHHHHhh
Confidence 467899999999999999999999999943 3344556777666664 57788887765
No 54
>2qxf_A Exodeoxyribonuclease I; alpha-beta domain, DNAQ superfamily, SH3-like domain, produc structure, DNA damage, DNA repair, exonuclease; HET: TMP; 1.50A {Escherichia coli} SCOP: c.55.3.5 PDB: 1fxx_A* 3c94_A 3c95_A 3hl8_A* 3hp9_A*
Probab=92.53 E-value=1.6 Score=43.43 Aligned_cols=96 Identities=9% Similarity=-0.096 Sum_probs=58.8
Q ss_pred HHhhHHHhcCCCceEEEee-hhhhHHHHHH---hcCCcc--------CceehHHHHHHhhcccc--------CCCCCCCC
Q 019356 91 VKACKPALESSYITKVIHD-CKRDSEALYF---QFGIKL--------HNVVDTQIAYSLIEEQE--------GRKRSPDD 150 (342)
Q Consensus 91 ~~~L~~lLe~~~i~KV~hd-~k~Dl~~L~~---~~Gi~l--------~~vfDtqlAa~LL~~~~--------~~~~L~~~ 150 (342)
...+..++..+....|+|| +.+|..+|.+ .+|+.+ ...+||+-.+..+.... ...+. .
T Consensus 85 l~~f~~~l~~~~~~lVaHNs~~FD~~fL~~~~~r~g~~~~~~~w~~~~~~iDtl~l~r~~~~~~~~~~~wP~~~~~~--~ 162 (482)
T 2qxf_A 85 AARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGL--P 162 (482)
T ss_dssp HHHHHHHHTSTTEEEEESSTTTTHHHHHHHHHHHTTSCSSGGGTGGGCEEEEHHHHHHHHHHHCCTTSCCCBCTTSS--B
T ss_pred HHHHHHHHcCCCCEEEEECCHHHHHHHHHHHHHHhCCCccccccccCCceeeHHHHHHHHHHhCcccccCcccccCC--C
Confidence 3455667774455679999 8999998853 344432 34678887665543210 00011 2
Q ss_pred CCcHHHhhcCccccCCccchhHHHHHHhcCCCCCCCCCCCcHHHHHHHHHHhHHHHHHHHHHHHH
Q 019356 151 YISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKK 215 (342)
Q Consensus 151 ~~sL~~Lv~~~~~Lg~~l~kK~~~~~l~~~~~~dW~~RPLs~~ql~YAA~Da~~Ll~L~~~L~~~ 215 (342)
..+|..|++ ++|++.. ..+ + |..||.++..|+..+.++
T Consensus 163 s~kL~~L~~---~~Gi~~~-~aH----------r-------------AL~DA~aTa~l~~~l~~~ 200 (482)
T 2qxf_A 163 SFRLEHLTK---ANGIEHS-NAH----------D-------------AMADVYATIAMAKLVKTR 200 (482)
T ss_dssp CCCHHHHHH---HTTCCCC--------------C-------------TTHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHH---HcCCCCC-CCC----------C-------------HHHHHHHHHHHHHHHHHh
Confidence 468888885 5676543 111 1 667899999998887754
No 55
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=92.12 E-value=0.066 Score=47.93 Aligned_cols=48 Identities=35% Similarity=0.504 Sum_probs=42.2
Q ss_pred CCceeeccCCchHHHHHHhhcchhhcccCCCCCCeEEEecchhhHHHHHHHhh
Q 019356 283 KMGRIIGRRGSSILAIKESCNAEILIGGAKGPPDKVFIIGPVKQVRKAEAMLR 335 (342)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (342)
..|++||+.|.+|.+|....++.|.|-+ ..|-|+|+.+.++.|..++.
T Consensus 139 ~~GriIGk~G~tik~ie~~Tg~~I~v~~-----~~v~i~G~~~~i~~A~~~i~ 186 (219)
T 2e3u_A 139 VRGRIIGRKGRTRQIIEEMSGASVSVYG-----KTVAIIGNPIQIEIAKTAIE 186 (219)
T ss_dssp HHHHHHCGGGHHHHHHHHHHCCEEEEET-----TEEEEEECHHHHHHHHHHHH
T ss_pred hhheeECCCchHHHHHHHHhCceEEECC-----eEEEEEeCHHHHHHHHHHHH
Confidence 3688999999999999999999999965 56999999999988876654
No 56
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=90.28 E-value=0.15 Score=41.97 Aligned_cols=61 Identities=31% Similarity=0.597 Sum_probs=46.2
Q ss_pred cCCCCC------CCceeeccCCchHHHHHHhhcchhhcccC-----------CCC-------CCeEEEecchh-hHHHHH
Q 019356 277 LDVPPG------KMGRIIGRRGSSILAIKESCNAEILIGGA-----------KGP-------PDKVFIIGPVK-QVRKAE 331 (342)
Q Consensus 277 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~-------~~~~~~~~~~~-~~~~~~ 331 (342)
..||+. +++++||-+|.+|..|.+...|.|.|=|- .|+ |=.|+|.++-. .+.+|.
T Consensus 11 v~IP~~~~P~~n~iG~IIGP~G~tiK~Iq~eTG~kI~IrgkgS~~~~~~~~~~~~~~~~~~e~lhV~I~a~~~e~~~~A~ 90 (131)
T 1k1g_A 11 VMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTMENVKKAV 90 (131)
T ss_dssp EECCTTTCCSHHHHHHHHCSSSHHHHHHHHHSCCEEEEEESTTSSSSSSSSCCCCCSCCSSCCEEEEEEESSHHHHHHHH
T ss_pred EEECCccccCcceeeeEECCCcHHHHHHHHHHCCeEEecCCcccccccccccccccccccCCCeEEEEEECCHHHHHHHH
Confidence 455655 46799999999999999999999999761 111 45799999744 567888
Q ss_pred HHhhhc
Q 019356 332 AMLRGR 337 (342)
Q Consensus 332 ~~~~~~ 337 (342)
+++..-
T Consensus 91 ~~I~~l 96 (131)
T 1k1g_A 91 EQIRNI 96 (131)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777653
No 57
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=90.28 E-value=0.14 Score=44.90 Aligned_cols=47 Identities=32% Similarity=0.436 Sum_probs=41.3
Q ss_pred CCceeeccCCchHHHHHHhhcchhhcccCCCCCCeEEEecchhhHHHHHHHh
Q 019356 283 KMGRIIGRRGSSILAIKESCNAEILIGGAKGPPDKVFIIGPVKQVRKAEAML 334 (342)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (342)
..|++||+.|.+|.+|....++.|.|-|. .|-|+|+.+.+.-|...+
T Consensus 108 ~~GrIIGk~G~tik~iE~~Tg~~I~v~~~-----~v~i~G~~~~i~~Ar~~i 154 (191)
T 1tua_A 108 IKGRIIGEGGRARRTIEEMTDTYINVGEY-----EVAIIGDYERAMAAKQAI 154 (191)
T ss_dssp HHHHHHCGGGHHHHHHHHHHTCEEEECSS-----EEEEEEEHHHHHHHHHHH
T ss_pred HhhheeCCCccHHHHHHHHHCceEEEcCC-----EEEEEeChHHHHHHHHHH
Confidence 46999999999999999999999999873 899999999887775544
No 58
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=88.38 E-value=0.22 Score=40.28 Aligned_cols=53 Identities=21% Similarity=0.350 Sum_probs=43.2
Q ss_pred CCceeeccCCchHHHHHHhhcchhhcccCCC-------------CCCeEEEecc-hhhHHHHHHHhhh
Q 019356 283 KMGRIIGRRGSSILAIKESCNAEILIGGAKG-------------PPDKVFIIGP-VKQVRKAEAMLRG 336 (342)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~-~~~~~~~~~~~~~ 336 (342)
+++++||-+|.+|..|.+...+.|.|=| +| -|=.|+|.++ ...+.+|.+|+..
T Consensus 29 ~ig~IIGpgG~tiK~I~~eTG~kI~I~G-~gS~~~e~~~~~e~~e~l~V~I~a~~~e~i~~A~~~Ie~ 95 (119)
T 2yqr_A 29 VKEKVEGPGCSYLQHIQIETGAKVFLRG-KGSGCIEPASGREAFEPMYIYISHPKPEGLAAAKKLCEN 95 (119)
T ss_dssp HHHHHSCGGGHHHHHHHHHHCCEEEEES-BTTTCCCTTTSSCCSSBCEEEEEESSHHHHHHHHHHHHH
T ss_pred eeeeEECCCChHHHHHHHHHCCEEEEec-CCccccccccccccCCCcEEEEEeCCHHHHHHHHHHHHH
Confidence 5789999999999999999999999975 32 3347999987 4567888887654
No 59
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=87.87 E-value=0.24 Score=47.74 Aligned_cols=68 Identities=15% Similarity=0.192 Sum_probs=56.3
Q ss_pred ChhhhhhhcCCCCCCCceeeccCC--chHHHHHHhhcchhhcccCC-------CCCCeEEEecchhhHHHHHHHhhh
Q 019356 269 PEEEILSILDVPPGKMGRIIGRRG--SSILAIKESCNAEILIGGAK-------GPPDKVFIIGPVKQVRKAEAMLRG 336 (342)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~ 336 (342)
.++.+-...+||+.--..+||++| ++|..|.+..+..|.+=-.. ..-|.|.|-|+...|-+|.+.|+.
T Consensus 26 ~~~~VTl~v~Ip~~~Hs~IIGkgG~~sNIkkImeEtgv~I~fPD~~~~~~~~~~ks~~VtItG~~enVE~AR~~I~~ 102 (376)
T 3n89_A 26 NPTRVTLNMEFESQYYSLMTSDNGDHENVASIMAETNTLIQLPDRSVGGTTPDPFAQQVTITGYFGDVDRARMLMRR 102 (376)
T ss_dssp CTTEEEEEEECCGGGHHHHHSCCSSSCSHHHHHHHHTCEEECCCCCCCSSSCCTTTTEEEEEEEHHHHHHHHHHHHH
T ss_pred cCCEEEEEEEEchhhhhhhccCCChHHHHHHHHHHhCCeEECCCCcccccCCcCCCCeEEEEcCHHHHHHHHHHHHh
Confidence 356677788998777788999999 99999999999999994322 123559999999999999999886
No 60
>2xri_A ERI1 exoribonuclease 3; hydrolase, metal binding; 2.15A {Homo sapiens}
Probab=86.02 E-value=2.5 Score=37.08 Aligned_cols=90 Identities=12% Similarity=0.144 Sum_probs=53.7
Q ss_pred HHHhhHHHhcCCCceEEEeeh--------hhhHHH-HH---HhcCCccC----ceehHHHHHHhhccccCCCCCCCCCCc
Q 019356 90 VVKACKPALESSYITKVIHDC--------KRDSEA-LY---FQFGIKLH----NVVDTQIAYSLIEEQEGRKRSPDDYIS 153 (342)
Q Consensus 90 ~~~~L~~lLe~~~i~KV~hd~--------k~Dl~~-L~---~~~Gi~l~----~vfDtqlAa~LL~~~~~~~~L~~~~~s 153 (342)
++..+..++.+..+ |+||+ .+|+.. |. ..+|+... ..+|++-...+..... + ..+
T Consensus 107 v~~~f~~~l~~~~l--v~hn~~~~~~t~g~fD~~fll~~~~~~~g~~~p~~~~~~iD~~~~~~~~~~~~-----p--~~~ 177 (224)
T 2xri_A 107 VLERVDEWMAKEGL--LDPNVKSIFVTCGDWDLKVMLPGQCQYLGLPVADYFKQWINLKKAYSFAMGCW-----P--KNG 177 (224)
T ss_dssp HHHHHHHHHHHTTT--TSTTSCEEEEESSSHHHHTHHHHHHHHHTCCCCGGGSCEEEHHHHHHHHHTSC-----C--TTT
T ss_pred HHHHHHHHHhhccc--ccCCCceEEEEeChhhHHHHHHHHHHHhCCCCcccccceEeHHHHHHHHhccC-----C--CCC
Confidence 34556667776533 78888 899885 53 24566542 5789643322221110 1 258
Q ss_pred HHHhhcCccccCCccchhHHHHHHhcCCCCCCCCCCCcHHHHHHHHHHhHHHHHHHHHHHH
Q 019356 154 FVGLLADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMK 214 (342)
Q Consensus 154 L~~Lv~~~~~Lg~~l~kK~~~~~l~~~~~~dW~~RPLs~~ql~YAA~Da~~Ll~L~~~L~~ 214 (342)
|..|++ ++|++.....+ -|..||..+..|+..|..
T Consensus 178 L~~l~~---~~gi~~~~~~H-----------------------~Al~DA~~ta~l~~~l~~ 212 (224)
T 2xri_A 178 LLDMNK---GLSLQHIGRPH-----------------------SGIDDCKNIANIMKTLAY 212 (224)
T ss_dssp HHHHHH---HTTCCCCSCTT-----------------------CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH---HcCCCCCCCCc-----------------------ChHHHHHHHHHHHHHHHH
Confidence 888885 56765421011 177899999999888764
No 61
>1w0h_A 3'-5' exonuclease ERI1; nuclease domain, hydrolase; HET: AMP; 1.59A {Homo sapiens} SCOP: c.55.3.5
Probab=85.44 E-value=1.3 Score=37.92 Aligned_cols=94 Identities=15% Similarity=0.165 Sum_probs=59.7
Q ss_pred HHhhHHHhcCCC-----ceEEEeehhhhHH-HHHH---hcCCccC----ceehHHHHHHhhccccCCCCCCCCCCcHHHh
Q 019356 91 VKACKPALESSY-----ITKVIHDCKRDSE-ALYF---QFGIKLH----NVVDTQIAYSLIEEQEGRKRSPDDYISFVGL 157 (342)
Q Consensus 91 ~~~L~~lLe~~~-----i~KV~hd~k~Dl~-~L~~---~~Gi~l~----~vfDtqlAa~LL~~~~~~~~L~~~~~sL~~L 157 (342)
+..+..++.+.. ..-|+||+.+|+. +|.+ .+|+... ..+||+..+..+-+.. . ...+|..+
T Consensus 89 ~~~~~~~l~~~~~~~~~~~lv~hn~~fD~~~~L~~~~~~~~~~~p~~~~~~~dt~~l~~~~~~~~-~-----~~~~L~~l 162 (204)
T 1w0h_A 89 LKKVIDWMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVP-R-----SQTKLTIM 162 (204)
T ss_dssp HHHHHHHHHHTTBTTTBCEEEEESSTTTTHHHHHHHHHHHTCCCCGGGSEEEEHHHHHHHHHTCC-G-----GGCSHHHH
T ss_pred HHHHHHHHHhcCCCCCCcEEEEEECcchHHHHHHHHHHHhCCCCcccccceEEHHHHHHHHhCCC-C-----ccchHHHH
Confidence 345566666543 2359999999996 7753 3566532 5899987654332210 0 13688999
Q ss_pred hcCccccCCccchhHHHHHHhcCCCCCCCCCCCcHHHHHHHHHHhHHHHHHHHHHHHHH
Q 019356 158 LADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKL 216 (342)
Q Consensus 158 v~~~~~Lg~~l~kK~~~~~l~~~~~~dW~~RPLs~~ql~YAA~Da~~Ll~L~~~L~~~L 216 (342)
++ ++|++.....+ + |..||..+..|+..|.++.
T Consensus 163 ~~---~~gi~~~~~~H----------~-------------Al~Da~~ta~l~~~l~~~~ 195 (204)
T 1w0h_A 163 LE---KLGMDYDGRPH----------C-------------GLDDSKNIARIAVRMLQDG 195 (204)
T ss_dssp HH---HTTCCCCSCTT----------C-------------HHHHHHHHHHHHHHHHHTT
T ss_pred HH---HcCCCCCCCcc----------C-------------cHHHHHHHHHHHHHHHHCC
Confidence 86 56765431011 1 7789999999998887654
No 62
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=84.55 E-value=0.24 Score=50.96 Aligned_cols=57 Identities=14% Similarity=0.309 Sum_probs=48.4
Q ss_pred hcCCCCCCCceeeccCCchHHHHHHhhcchhhcccCCCCCCeEEEecchhh-HHHHHHHhhh
Q 019356 276 ILDVPPGKMGRIIGRRGSSILAIKESCNAEILIGGAKGPPDKVFIIGPVKQ-VRKAEAMLRG 336 (342)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 336 (342)
...|||.|++.+||..|.+|..|.+..++.|-|.- --+|+|.|+-++ +.+|..++.+
T Consensus 570 ~~~I~~~kI~~vIG~gG~~Ik~I~e~tg~~I~I~d----~G~V~I~~~~~~~~~~A~~~I~~ 627 (630)
T 3u1k_A 570 TVQVPLSKRAKFVGPGGYNLKKLQAETGVTISQVD----EETFSVFAPTPSAMHEARDFITE 627 (630)
T ss_dssp EEECCHHHHHHHHCGGGHHHHHHHHHHCCEEEECS----SSEEEEEESSHHHHHHHHHHTTC
T ss_pred EEEeChhHhheeECCCChhHHHHHHHHCCEEEEcC----CcEEEEEeCCHHHHHHHHHHHHH
Confidence 34788999999999999999999999999999983 258999999754 7888887764
No 63
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=84.26 E-value=0.3 Score=43.56 Aligned_cols=58 Identities=21% Similarity=0.417 Sum_probs=48.1
Q ss_pred hcCCCCCCCceeeccCCchHHHHHHhhcchhhcccCCCCCCeEEEecch-----hhHHHHHHHhhh
Q 019356 276 ILDVPPGKMGRIIGRRGSSILAIKESCNAEILIGGAKGPPDKVFIIGPV-----KQVRKAEAMLRG 336 (342)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~ 336 (342)
...|||.|++.+||..|.+|..|.+.+++.|-|--.. ..|.|-|+. ..+.||..++..
T Consensus 37 ~i~IP~~kig~lIG~gGk~Ik~I~e~tgvkI~I~~~~---g~V~I~~~~~t~d~~~i~kA~~~I~~ 99 (219)
T 2e3u_A 37 YVKIPKDRIAVLIGKKGQTKKEIEKRTKTKITIDSET---GEVWITSTKETEDPLAVWKARDIVLA 99 (219)
T ss_dssp EEECCHHHHHHHHCGGGHHHHHHHHHHTEEEEECTTT---CEEEEEECTTCCSHHHHHHHHHHHHH
T ss_pred EEEeCHHHhhhhhcccHHHHHHHHHHHCcEEEEEcCC---CEEEEecCCCCCCHHHHHHHHHHHHH
Confidence 5789999999999999999999999999998885322 358877764 788999888765
No 64
>1qht_A Protein (DNA polymerase); archaea, hyperthermostable, family B polymer alpha family polymerase, transferase; 2.10A {Thermococcus SP} SCOP: c.55.3.5 e.8.1.1 PDB: 1tgo_A 2xhb_A* 2vwj_A* 2vwk_A* 1wns_A* 1wn7_A 1qqc_A* 4ahc_A* 4ail_C* 3a2f_A* 2jgu_A* 1d5a_A
Probab=84.12 E-value=24 Score=36.96 Aligned_cols=149 Identities=11% Similarity=0.089 Sum_probs=84.3
Q ss_pred CCceEEEEeeeeCCC----CCCcEEEEEEEeCCcEEEEEcCC--------C-C-hhHHHhhHHHhc--CCCceEEEeeh-
Q 019356 48 RQLVIGFDCEGVDLC----RHGSLCIMQLAFPDAIYLVDAIQ--------G-G-ETVVKACKPALE--SSYITKVIHDC- 110 (342)
Q Consensus 48 ~~~~Ia~D~E~~~~~----~~g~l~llQLa~~~~~~liD~~~--------l-~-~~~~~~L~~lLe--~~~i~KV~hd~- 110 (342)
.-..++||.|+.+.. ....+..|.+...+...++-... . . .+++..+..++. ||.+ -|+||.
T Consensus 134 ~l~ilsfDIEt~~~~~p~~~~d~Ii~Is~~~~~~~~~~t~~~i~~~~v~~~~~E~~LL~~f~~~i~~~dPDi-ivGyN~~ 212 (775)
T 1qht_A 134 ELTMLAFAIATLYHEGEEFGTGPILMISYADGSEARVITWKKIDLPYVDVVSTEKEMIKRFLRVVREKDPDV-LITYNGD 212 (775)
T ss_dssp CCCEEEEEEEECCCTTCCTTCSCEEEEEEECSSCEEEEESSCCCCSSEEECSCHHHHHHHHHHHHHHHCCSE-EEESSTT
T ss_pred CcEEEEEEEEEcCCCCCCCCCCcEEEEEEEecCCCeeEeeccccccceEEcCCHHHHHHHHHHHHHhcCCCE-EEEeCCC
Confidence 346899999998632 12344444333333222221111 0 1 134555555554 5664 489996
Q ss_pred hhhHHHHHHh---cCCcc------------------------CceehHHHHHHhhccccCCCCCCCCCCcHHHhhcCccc
Q 019356 111 KRDSEALYFQ---FGIKL------------------------HNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRY 163 (342)
Q Consensus 111 k~Dl~~L~~~---~Gi~l------------------------~~vfDtqlAa~LL~~~~~~~~L~~~~~sL~~Lv~~~~~ 163 (342)
.+|+..|... +|+.+ ...+|++....-.. .+ ...+|.++++ .+
T Consensus 213 ~FDlpyL~~Ra~~~gi~~~lgR~~~~~~~~~~g~~~~~~i~Gr~~lDl~~~~k~~~------~l--~sysL~~Va~--~~ 282 (775)
T 1qht_A 213 NFDFAYLKKRCEELGIKFTLGRDGSEPKIQRMGDRFAVEVKGRIHFDLYPVIRRTI------NL--PTYTLEAVYE--AV 282 (775)
T ss_dssp TTHHHHHHHHHHHTTCCCCCSTTSCCCEEEEETTEEEEECTTSEEEEHHHHHHHHS------CC--SCCCHHHHHH--HH
T ss_pred CccHHHHHHHHHHcCCCcccccCCCcCceeecCceeeEEecCeEEEEHHHHHHHhc------Cc--CcCCHHHHHH--HH
Confidence 5789887642 45432 12678876543211 11 2478999998 88
Q ss_pred cCCccch--hHHHHHHhcCCCCCCCCCCCcHHHHHHHHHHhHHHHHHHHHHHH
Q 019356 164 CGISYQE--KEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMK 214 (342)
Q Consensus 164 Lg~~l~k--K~~~~~l~~~~~~dW~~RPLs~~ql~YAA~Da~~Ll~L~~~L~~ 214 (342)
||..-.+ .++... -|...+--...+.|+..||..+..|+..+..
T Consensus 283 Lg~~K~dv~~~~i~~-------~~~~~~~l~~l~~Y~~~Da~lt~~L~~~~~~ 328 (775)
T 1qht_A 283 FGKPKEKVYAEEIAQ-------AWESGEGLERVARYSMEDAKVTYELGREFFP 328 (775)
T ss_dssp HCCCCCCCCHHHHHH-------HHTTTCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCCCCccCHHHHHH-------HHhcCccHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 9864221 223222 2443331267899999999999999876643
No 65
>1zbh_A 3'-5' exonuclease ERI1; histone mRNA 3'-END-specific recognition, structures of 3'- exonuclease and ITS RNA complex, hydrolase/RNA complex; HET: AMP; 3.00A {Homo sapiens}
Probab=77.81 E-value=3.8 Score=37.73 Aligned_cols=95 Identities=15% Similarity=0.193 Sum_probs=61.3
Q ss_pred HHhhHHHhcCCC-----ceEEEeehhhhHH-HHHHh---cCCccC----ceehHHHHHH-hhccccCCCCCCCCCCcHHH
Q 019356 91 VKACKPALESSY-----ITKVIHDCKRDSE-ALYFQ---FGIKLH----NVVDTQIAYS-LIEEQEGRKRSPDDYISFVG 156 (342)
Q Consensus 91 ~~~L~~lLe~~~-----i~KV~hd~k~Dl~-~L~~~---~Gi~l~----~vfDtqlAa~-LL~~~~~~~~L~~~~~sL~~ 156 (342)
+..|..++.+.. ..-|+||+.+|+. +|.+. +|+... .++||+.... +.+... ...+|..
T Consensus 157 l~~f~~~l~~~~~~~~~~~lVahn~~fD~~~fL~~~~~~~g~~~p~~~~~~iDt~~l~~~~~~~~~-------~~~~L~~ 229 (299)
T 1zbh_A 157 LKKVIDLMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVPR-------SQTKLTI 229 (299)
T ss_dssp HHHHHHHHHHTTBTTTBCEEEEESSSHHHHTHHHHHHHHTTBCCCGGGSEEEEHHHHHHHHHTCCG-------GGCSHHH
T ss_pred HHHHHHHHhhcccCCCCcEEEEEeCHHHHHHHHHHHHHHcCCCCCcccchHHHHHHHHHHHhCCCC-------CCccHHH
Confidence 455666776641 3459999999998 88543 566542 5889976443 222111 1368899
Q ss_pred hhcCccccCCccchhHHHHHHhcCCCCCCCCCCCcHHHHHHHHHHhHHHHHHHHHHHHHHhc
Q 019356 157 LLADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQ 218 (342)
Q Consensus 157 Lv~~~~~Lg~~l~kK~~~~~l~~~~~~dW~~RPLs~~ql~YAA~Da~~Ll~L~~~L~~~L~~ 218 (342)
|++ ++|++.....+ + |..||.++..|+..|.++...
T Consensus 230 l~~---~~gi~~~g~~H----------~-------------Al~DA~ata~l~~~l~~~~~~ 265 (299)
T 1zbh_A 230 MLE---KLGMDYDGRPN----------C-------------GLDDSKNIARIAVRMLQDGCE 265 (299)
T ss_dssp HHH---HTTCCCCSCTT----------C-------------HHHHHHHHHHHHHHHHHTTCC
T ss_pred HHH---HcCCCCCCCCC----------C-------------hHHHHHHHHHHHHHHHHhCCc
Confidence 986 56765431011 1 788999999999988776544
No 66
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1
Probab=77.32 E-value=0.95 Score=37.52 Aligned_cols=52 Identities=27% Similarity=0.560 Sum_probs=42.8
Q ss_pred CceeeccCCchHHHHHHhhcchhhcccCCCC-------------CC--------eEEEecchh------hHHHHHHHhhh
Q 019356 284 MGRIIGRRGSSILAIKESCNAEILIGGAKGP-------------PD--------KVFIIGPVK------QVRKAEAMLRG 336 (342)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~--------~~~~~~~~~------~~~~~~~~~~~ 336 (342)
+|++||-+|.|+..|.+.+++.|.|=| +|. |+ .|+|.++-. .+.+|.+++..
T Consensus 19 iG~IiGPrG~t~K~ie~eTg~kI~IrG-kGS~kd~~~e~~~~g~~~~~~~~epLHV~Isa~~~~~~~~~~l~~A~~~I~~ 97 (140)
T 2bl5_A 19 VGRILGPRGLTAKQLEAETGCKIMVRG-KGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQNRAELKLKRAVEEVKK 97 (140)
T ss_dssp HHHHTTTTHHHHHHHHHHHSEEEEEES-TTSSCCHHHHHTSTTSHHHHTTTSCCEEEEEECSCCHHHHHHHHHHHHHHHH
T ss_pred eeEEECCCcchHHHHHHHHCCeEEEec-CCCcccccccccccCCCCccccCCCcEEEEEecCchhhHHHHHHHHHHHHHH
Confidence 689999999999999999999999988 552 21 799999654 57788877765
No 67
>1zbu_A ERI-1 homolog, 3'-5' exonuclease ERI1; hydrolase; HET: AMP; 3.00A {Homo sapiens}
Probab=73.37 E-value=8.2 Score=36.53 Aligned_cols=95 Identities=14% Similarity=0.165 Sum_probs=61.1
Q ss_pred HHhhHHHhcCCC-----ceEEEeehhhhHH-HHHH---hcCCccC----ceehHHHHHHhh-ccccCCCCCCCCCCcHHH
Q 019356 91 VKACKPALESSY-----ITKVIHDCKRDSE-ALYF---QFGIKLH----NVVDTQIAYSLI-EEQEGRKRSPDDYISFVG 156 (342)
Q Consensus 91 ~~~L~~lLe~~~-----i~KV~hd~k~Dl~-~L~~---~~Gi~l~----~vfDtqlAa~LL-~~~~~~~~L~~~~~sL~~ 156 (342)
+..|..++.+.. ..-|+||+.+|+. +|.+ .+|+... .++||+....-+ +... ...+|..
T Consensus 207 l~~f~~~l~~~~~~~~~~~lVaHNa~FD~~~fL~~~~~~~g~~~p~~~~~~iDt~~l~~~~~~~~~-------~~~~L~~ 279 (349)
T 1zbu_A 207 LKKVIDLMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVPR-------SQTKLTI 279 (349)
T ss_dssp HHHHHHHHHHTTBTTTBCEEEEESSSHHHHTHHHHHHHHTTBCCCGGGSEEEEHHHHHHHHHTCCG-------GGGSHHH
T ss_pred HHHHHHHHhcccccCCCcEEEEECcHhhHHHHHHHHHHHhCCCCccccchHHHHHHHHHHHhcCCC-------CCCCHHH
Confidence 445666776541 3459999999998 8854 3566532 578998654322 2111 1368899
Q ss_pred hhcCccccCCccchhHHHHHHhcCCCCCCCCCCCcHHHHHHHHHHhHHHHHHHHHHHHHHhc
Q 019356 157 LLADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQ 218 (342)
Q Consensus 157 Lv~~~~~Lg~~l~kK~~~~~l~~~~~~dW~~RPLs~~ql~YAA~Da~~Ll~L~~~L~~~L~~ 218 (342)
|++ ++|+......+ + |..||.++..|+..|..+...
T Consensus 280 l~~---~~gi~~~g~~H----------r-------------Al~DA~ata~ll~~ll~~~~~ 315 (349)
T 1zbu_A 280 MLE---KLGMDYDGRPH----------C-------------GLDDSKNIARIAVRMLQDGCE 315 (349)
T ss_dssp HHH---HTTCCCCSCTT----------C-------------HHHHHHHHHHHHHHHHHTTCC
T ss_pred HHH---HcCCCCCCCCC----------C-------------HHHHHHHHHHHHHHHHHhccc
Confidence 986 56765431011 1 788999999999988776543
No 68
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=67.83 E-value=1.9 Score=41.51 Aligned_cols=60 Identities=12% Similarity=0.159 Sum_probs=44.8
Q ss_pred CCCCCCCceeeccCCc--hHHHHHHhhcchhhcccCCCC------CCeEEEecchhhHHHHHHHhhhc
Q 019356 278 DVPPGKMGRIIGRRGS--SILAIKESCNAEILIGGAKGP------PDKVFIIGPVKQVRKAEAMLRGR 337 (342)
Q Consensus 278 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~ 337 (342)
.|+|.-...+||+.|+ .|..|.+.-++.|.+=...-+ .+.|.|.|....|.+|...|.|-
T Consensus 191 ~V~~~~H~~IIGk~G~n~~IkkIr~eTGv~I~FP~~~d~~d~~~~~~~ItItGs~e~V~~Ark~I~~l 258 (376)
T 3n89_A 191 TLSTYYVDQVLGSSSTAQLMPVIERETTTIISYPCYNNRNETRGNIYEIKVVGNIDNVLKARRYIMDL 258 (376)
T ss_dssp EEEGGGHHHHTCCTTSCCHHHHHHHHHTCEEECC---------CCEEEEEEESCHHHHHHHHHHHHHT
T ss_pred EeCHHHHHHhhcCCCcchHHHHHHHhhCCEEECCCCCCcccccCCceEEEEEeCHHHHHHHHHHHHhh
Confidence 4555555678999994 569999999999998332222 23599999999999999998873
No 69
>3v69_A Protein filia; RNA-binding, embryogenesis, KH domain, RNA binding, P binding; 2.20A {Mus musculus}
Probab=58.67 E-value=7.4 Score=32.00 Aligned_cols=54 Identities=22% Similarity=0.400 Sum_probs=43.8
Q ss_pred CCCceeeccCCchHHHHHHhhcchhhcccCCCCC--CeEEEecchhhHHHHHHHhhh
Q 019356 282 GKMGRIIGRRGSSILAIKESCNAEILIGGAKGPP--DKVFIIGPVKQVRKAEAMLRG 336 (342)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 336 (342)
--.+.++|++|+.|..|-...++.|-+--- .|. -.|.|.|+..-=++|..||..
T Consensus 65 ~lve~IFGp~Gs~Ip~IE~~SqTLIqV~~~-~s~g~tEVtIfG~~~~Q~rak~MI~s 120 (140)
T 3v69_A 65 RLLEIMFGKDGEHIPHLESMLHTLIHVNVW-GPERRAEIWIFGPPPFRRDVDRMLTD 120 (140)
T ss_dssp GGHHHHHCGGGTTHHHHHHHHTSEEEEECC-CTTSCEEEEEESCHHHHHHHHHHHHH
T ss_pred hhhhcccCCCcCccchHHhhcceeEEEecc-CCCCcEEEEEECCHHHHHHHHHHHHH
Confidence 335788999999999999999999988643 232 349999999988899988853
No 70
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=57.48 E-value=5 Score=34.83 Aligned_cols=56 Identities=23% Similarity=0.376 Sum_probs=45.0
Q ss_pred hcCCCCCCCceeeccCCchHHHHHHhhcchhhcccCCCCCCeEEEe-----cchhhHHHHHHHh
Q 019356 276 ILDVPPGKMGRIIGRRGSSILAIKESCNAEILIGGAKGPPDKVFII-----GPVKQVRKAEAML 334 (342)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~ 334 (342)
..-||+.+++.+||+.|.++..|.+.+++.|-|=... ..|.|- |..-.+-||..++
T Consensus 7 ~i~VP~~rvg~liGk~g~~~k~i~e~~g~~i~id~~~---~~V~i~t~~~t~dp~~i~KA~dlI 67 (191)
T 1tua_A 7 YVKVKPERLGAVIGPRGEVKAEIMRRTGTVITVDTEN---SMVIVEPEAEGIPPVNLMKAAEVV 67 (191)
T ss_dssp EEECCGGGHHHHHCGGGHHHHHHHHHHTEEEEEETTT---TEEEEEESSTTSCHHHHHHHHHHH
T ss_pred EEECCHHHhhHHHhcCHhHHHHHHHHHCcEEEEEcCC---CeEEEEeCCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999999999888775422 246666 7777888888777
No 71
>3cg7_A CRN-4, cell death-related nuclease 4; hydrolase, apoptosis, 3'-5' exonuclease, deddh; 2.50A {Caenorhabditis elegans} PDB: 3cm5_A 3cm6_A
Probab=53.15 E-value=7.7 Score=35.90 Aligned_cols=97 Identities=11% Similarity=0.067 Sum_probs=56.1
Q ss_pred HHhhHHHhcCCCceEEEeeh------hhhH-HHHH---HhcCCccC----ceehHHHHHHhhccccCCCCCCCCCCcHHH
Q 019356 91 VKACKPALESSYITKVIHDC------KRDS-EALY---FQFGIKLH----NVVDTQIAYSLIEEQEGRKRSPDDYISFVG 156 (342)
Q Consensus 91 ~~~L~~lLe~~~i~KV~hd~------k~Dl-~~L~---~~~Gi~l~----~vfDtqlAa~LL~~~~~~~~L~~~~~sL~~ 156 (342)
+..|..++.+..+ |+||+ .+|+ .+|. ..+|+... ..+||+-.+..+-+....... ....+|..
T Consensus 99 l~~f~~~l~~~~l--vahn~~lv~~g~fD~~~fL~~~~~~~g~~~p~~~~~~iDt~~l~~~~~~~~~~~~~-~~~~~L~~ 175 (308)
T 3cg7_A 99 YEQFQQWLITLGL--EEGKFAFVCDSRQDLWRIAQYQMKLSNIQMPAFFRQYINLYKIFTNEMDRMGPKEL-SATTNIGK 175 (308)
T ss_dssp HHHHHHHHHHHCC--CTTSEEEEESSSHHHHTHHHHHHHHTTCCCCGGGSEEEEHHHHHHHHHHHHCCCCC-CCCSHHHH
T ss_pred HHHHHHHHHhCCc--CCcceEEeccCcccHHHHHHHHHHHcCCCCchhhcceeeHHHHHHHHhcccccccc-ccCcCHHH
Confidence 3455566665432 55665 8998 4664 24676653 478998655433222110000 01368899
Q ss_pred hhcCccccCCccchhHHHHHHhcCCCCCCCCCCCcHHHHHHHHHHhHHHHHHHHHHHHHH
Q 019356 157 LLADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKL 216 (342)
Q Consensus 157 Lv~~~~~Lg~~l~kK~~~~~l~~~~~~dW~~RPLs~~ql~YAA~Da~~Ll~L~~~L~~~L 216 (342)
+++ ++|++.....+ -|..||..+..|+..|.++.
T Consensus 176 l~~---~~gi~~~~~~H-----------------------rAl~DA~ata~l~~~l~~~~ 209 (308)
T 3cg7_A 176 MNE---YYDLPTIGRAH-----------------------DAMDDCLNIATILQRMINMG 209 (308)
T ss_dssp HHH---HTTCCCCSCTT-----------------------CHHHHHHHHHHHHHHHHHTT
T ss_pred HHH---HcCCCCCCCCc-----------------------CHHHHHHHHHHHHHHHHHcC
Confidence 985 66765431101 17789999999998886543
No 72
>2igi_A Oligoribonuclease; RNAse, exoribonuclease, exonuclease, hydrolase, mRNA decay; 1.70A {Escherichia coli} SCOP: c.55.3.5 PDB: 1yta_A 1j9a_A
Probab=52.67 E-value=64 Score=26.47 Aligned_cols=20 Identities=20% Similarity=0.054 Sum_probs=17.0
Q ss_pred HHHHhHHHHHHHHHHHHHHh
Q 019356 198 AADDVRFLPYIYHNMMKKLN 217 (342)
Q Consensus 198 AA~Da~~Ll~L~~~L~~~L~ 217 (342)
|..||..+..|+..+.+.+.
T Consensus 159 Al~Da~ata~l~~~~~~~~~ 178 (180)
T 2igi_A 159 AMDDIRESVAELAYYREHFI 178 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHTB
T ss_pred cHHHHHHHHHHHHHHHHHhh
Confidence 77899999999999887663
No 73
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=51.75 E-value=3.9 Score=42.67 Aligned_cols=56 Identities=20% Similarity=0.309 Sum_probs=8.4
Q ss_pred hcCCCCCCCceeeccCCchHHHHHHhhcchhhcccCCCCCCeEEEecchhhH-HHHHHHhh
Q 019356 276 ILDVPPGKMGRIIGRRGSSILAIKESCNAEILIGGAKGPPDKVFIIGPVKQV-RKAEAMLR 335 (342)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 335 (342)
...|||.|++.+||-.|.+|.+|.+...+.|-|.- .-+|+|.++-++. .+|.+++.
T Consensus 573 ~~~i~~~ki~~vig~gg~~i~~i~~~tg~~idi~d----dG~v~I~~~~~~~~~~A~~~i~ 629 (726)
T 4aid_A 573 TINIPTDKIREVIGSGGKVIREIVATTGAKVDIND----DGVVKVSASDGAKIKAAIDWIK 629 (726)
T ss_dssp ---------------------------------------------CCSCHHHHHHHHHC--
T ss_pred EEeCCHHHHHhhcCCCchhHHHHHHHHCCceeEEC----CceEEEEeCCHHHHHHHHHHHH
Confidence 45789999999999999999999999999998863 3579999987654 45555543
No 74
>3jxo_A TRKA-N domain protein; TRKA K+ channel component, structural genomics, PSI-2-2, Pro structure initiative, joint center for structural genomics; 1.55A {Thermotoga SP}
Probab=34.61 E-value=24 Score=25.38 Aligned_cols=24 Identities=29% Similarity=0.472 Sum_probs=19.9
Q ss_pred CCCeEEEecchhhHHHHHHHhhhc
Q 019356 314 PPDKVFIIGPVKQVRKAEAMLRGR 337 (342)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~ 337 (342)
+-|.++++|+.+++.+.+.++.|+
T Consensus 63 ~GD~l~v~g~~~~~~~~~~~~~~~ 86 (86)
T 3jxo_A 63 SGDKLYVIVSAEAKETVEETLLGR 86 (86)
T ss_dssp TTCEEEEEEETTTHHHHHHHHC--
T ss_pred CCCEEEEEECHHHHHHHHHHHcCC
Confidence 458899999999999999998774
No 75
>3k59_A POL II, DNA polymerase II; protein-DNA complex, DNA damage, DNA repair, DNA-binding; HET: DNA DOC DCP; 1.92A {Escherichia coli} PDB: 3k57_A* 3k58_A* 3k5l_A* 3k5m_A* 3k5n_A* 3k5o_A* 3maq_A* 1q8i_A*
Probab=33.15 E-value=2.9e+02 Score=28.87 Aligned_cols=141 Identities=11% Similarity=0.153 Sum_probs=78.9
Q ss_pred CCceEEEEeeeeCCCCCCcEEEEEEEe--C--CcEEEEEcCCC-------------C-hhHHHhhHHHhc--CCCceEEE
Q 019356 48 RQLVIGFDCEGVDLCRHGSLCIMQLAF--P--DAIYLVDAIQG-------------G-ETVVKACKPALE--SSYITKVI 107 (342)
Q Consensus 48 ~~~~Ia~D~E~~~~~~~g~l~llQLa~--~--~~~~liD~~~l-------------~-~~~~~~L~~lLe--~~~i~KV~ 107 (342)
.-..++||.|... .|. +++|+. . +.++.+..... . .+++..+..++. ||.+ -++
T Consensus 152 ~lrilsfDIE~~~---~g~--i~~I~~~~~~~~~v~~l~~~~~~~~~~~~~V~~f~~E~~lL~~f~~~i~~~dPDi-i~g 225 (786)
T 3k59_A 152 PLKWVSIDIETTR---HGE--LYCIGLEGCGQRIVYMLGPENGDASSLDFELEYVASRPQLLEKLNAWFANYDPDV-IIG 225 (786)
T ss_dssp CCCEEEEEEEECT---TSC--EEEEEEEETTEEEEEEESSCCSCCTTCSSEEEEESSHHHHHHHHHHHHHHHCCSE-EEE
T ss_pred CCeEEEEEEEEcC---CCC--EEEEEecCCCCCeEEEEecCCCCCCCCCceEEEeCCHHHHHHHHHHHHHHcCCCE-EEe
Confidence 4578999999863 233 444443 2 24555543210 1 134455555444 4665 389
Q ss_pred eehh-hhHHHHHH---hcCCcc-------------------------C--ceehHHHHHHhhccccCCCCCCCCCCcHHH
Q 019356 108 HDCK-RDSEALYF---QFGIKL-------------------------H--NVVDTQIAYSLIEEQEGRKRSPDDYISFVG 156 (342)
Q Consensus 108 hd~k-~Dl~~L~~---~~Gi~l-------------------------~--~vfDtqlAa~LL~~~~~~~~L~~~~~sL~~ 156 (342)
||.. +|+..|.+ .+|+.+ . -++|+.-+..-... .+ ...+|.+
T Consensus 226 ~N~~~FD~pyL~~Ra~~~~i~~~lGR~~~~~~~~~~~~~~~~~~~~i~GRv~lDl~~~lk~~~~-----~l--~SysL~~ 298 (786)
T 3k59_A 226 WNVVQFDLRMLQKHAERYRLPLRLGRDNSELEWREHGFKNGVFFAQAKGRLIIDGIEALKSAFW-----NF--SSFSLET 298 (786)
T ss_dssp SSTTTTHHHHHHHHHHHHTCCCCCBTTTBCCEEEECSSSTTCEEEECTTCEEEEHHHHHHHTTC-----CC--SCCSHHH
T ss_pred cCCccCcHHHHHHHHHHhCCCceeccCCCcccccccccCCCceeEEEcCEEEEEhHHHHHhccC-----CC--CCCCHHH
Confidence 9976 69988853 234321 1 15676544331111 11 2579999
Q ss_pred hhcCccccCCccc---h---hHHHHHHhcCCCCCCCCCCCcHHHHHHHHHHhHHHHHHHHHH
Q 019356 157 LLADPRYCGISYQ---E---KEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNM 212 (342)
Q Consensus 157 Lv~~~~~Lg~~l~---k---K~~~~~l~~~~~~dW~~RPLs~~ql~YAA~Da~~Ll~L~~~L 212 (342)
+++ .+||..-. . -++...+ |... ......|+..||...+.|+.++
T Consensus 299 Va~--~~Lg~~K~~~~~~~~~~eI~~~-------~~~~--~~~L~~Y~l~Da~L~~~L~~kl 349 (786)
T 3k59_A 299 VAQ--ELLGEGKSIDNPWDRMDEIDRR-------FAED--KPALATYNLKNCELVTQIFHKT 349 (786)
T ss_dssp HHH--HHHCCCCC-CCHHHHHHHHHHH-------HHHC--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH--HHhCCCCcccCccccHHHHHHH-------HhcC--HHHHHHHHHHHHHHHHHHHHHh
Confidence 998 88885421 1 0122221 2222 2578999999999999998874
No 76
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=30.72 E-value=10 Score=39.44 Aligned_cols=55 Identities=25% Similarity=0.367 Sum_probs=0.0
Q ss_pred hcCCCCCCCceeeccCCchHHHHHHhhcchhhcccCCCCCCeEEEecchh-hHHHHHHHh
Q 019356 276 ILDVPPGKMGRIIGRRGSSILAIKESCNAEILIGGAKGPPDKVFIIGPVK-QVRKAEAML 334 (342)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 334 (342)
...|+|.|++.+||..|.+|.+|.+.-.+.|=|+. .-+|+|.++-. .+.+|+.++
T Consensus 563 ~~~i~~~ki~~~ig~gGk~I~~I~~~~G~~IdI~~----dg~v~I~~~~~~~~~~a~~~i 618 (723)
T 3cdi_A 563 TIKINPDKIKDVIGKGGSVIRALTEETGTTIEIED----DGTVKIAATDGEKAKHAIRRI 618 (723)
T ss_dssp ------------------------------------------------------------
T ss_pred EEEECHHHhcccccccceeeeeeehhhCceEEecC----CccEEEecCCHHHHHHHHHHH
Confidence 45678999999999999999999999999999986 24688887754 345565544
No 77
>2gzo_A UPF0301 protein SO3346; GFT-protein structure, nesgc, alpha-beta, structural genomics, PSI, protein structure initiative; NMR {Shewanella oneidensis} SCOP: d.310.1.1
Probab=27.61 E-value=28 Score=30.08 Aligned_cols=43 Identities=23% Similarity=0.481 Sum_probs=28.1
Q ss_pred CCCCceeeccCC-chHHHHHHh-------------hcchhhcccCCCCCCeEEEecch
Q 019356 281 PGKMGRIIGRRG-SSILAIKES-------------CNAEILIGGAKGPPDKVFIIGPV 324 (342)
Q Consensus 281 ~~~~~~~~~~~~-~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~ 324 (342)
-|-||.+|+|-. .++..+... .+.-+++|||-.+ |+.||+...
T Consensus 33 ~Ga~GlIiNrP~~~~l~~ll~~l~~~~~~~~~~~~~~~~v~~GGPV~~-~rgfvLH~~ 89 (195)
T 2gzo_A 33 KGAMGLVINKPLGIEVNSLLEQMDLPTEQVSADLAMGSQVLMGGPVSQ-DRGFVLHTS 89 (195)
T ss_dssp TBCCEEECSSCCCBCHHHHHHHHTSCSSCCCCCCCCCSCBEESCSBTT-TSCCEEEEC
T ss_pred CceeEEEecCCCCCcHHHHHHhhCcccccccccccCCCeEEECCCcCC-CcEEEEEeC
Confidence 567888888753 566666553 2345788998765 577776543
No 78
>3ikm_A DNA polymerase subunit gamma-1; human mitochondrial DNA polymerase, disease mutation, DNA replication, DNA-binding, DNA-directed DNA polymerase; HET: DNA; 3.24A {Homo sapiens}
Probab=26.87 E-value=61 Score=35.32 Aligned_cols=104 Identities=18% Similarity=0.191 Sum_probs=66.4
Q ss_pred eEEEeehhhhHHHHHHhcCCccCc--eehHHHHHHhhcc----c--------cCC-------------------------
Q 019356 104 TKVIHDCKRDSEALYFQFGIKLHN--VVDTQIAYSLIEE----Q--------EGR------------------------- 144 (342)
Q Consensus 104 ~KV~hd~k~Dl~~L~~~~Gi~l~~--vfDtqlAa~LL~~----~--------~~~------------------------- 144 (342)
+.||||..+|...+..+|.+...+ .+|||-++-.+.- + .++
T Consensus 196 lIVGHNVsyDRARI~EeY~l~~sk~rFlDTMSLHvavsG~~s~QR~~w~~~kk~k~~~~~e~~~~~~~~~~~~~~p~~~~ 275 (1172)
T 3ikm_A 196 LVVGHNVSFDRAHIREQYLIQGSRMRFLDTMSMHMAISGLSSFQRSLWIAAKQGKHKVQPPTKQGQKSQRKARRGPAISS 275 (1172)
T ss_dssp CCBCBCSSSSTTGGGTSSCSSCCCCCCCBTTHHHHHHSCCCHHHHHHHHHHHHC--------------------------
T ss_pred EEEeCCcchhHHHHHHHHhcccCCceeeechhhhhhccccchhhHHHHHHhhhhcccchhhHHHHhhhccccccCccccC
Confidence 459999999998887789888753 7899977654321 0 000
Q ss_pred -CCCC-CCCC--cHHHhhcCccccCC-ccchhHHHHHHhcCCCCCCCCCCCc------HHHHHHHHHHhHHHHHHHHHHH
Q 019356 145 -KRSP-DDYI--SFVGLLADPRYCGI-SYQEKEEVRVLLRQDPQFWTYRPLT------ELMVRAAADDVRFLPYIYHNMM 213 (342)
Q Consensus 145 -~~L~-~~~~--sL~~Lv~~~~~Lg~-~l~kK~~~~~l~~~~~~dW~~RPLs------~~ql~YAA~Da~~Ll~L~~~L~ 213 (342)
..+. ...- ||+++.+ -+||. .++ |+. |. .|..-.+. .+.+.|||.||.++.++|.++.
T Consensus 276 ~~W~~~sS~N~~SL~dV~~--lhcg~~~ld-K~~-Rd-------~Fv~~~~~dI~~~fq~Lm~YCA~DV~aTh~V~~kl~ 344 (1172)
T 3ikm_A 276 WDWLDISSVNSNSLAEVHR--LYVGGPPLE-KEP-RE-------LFVKGTMKDIRENFQDLMQYCAQDVWATHEVFQQQL 344 (1172)
T ss_dssp CCCCCCCCTTSHHHHHHHT--CSSCSCS---SCS-SS-------STTTTCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccccCCCcCCHHHHHH--HhCCCcccC-hhh-Hh-------hhhcCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 0000 0113 6888888 88887 666 332 22 22222221 4568999999999999999998
Q ss_pred HHHhc
Q 019356 214 KKLNQ 218 (342)
Q Consensus 214 ~~L~~ 218 (342)
....+
T Consensus 345 P~F~e 349 (1172)
T 3ikm_A 345 PLFLE 349 (1172)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 87654
No 79
>3tr8_A Oligoribonuclease; transcription, hydrolase; 2.50A {Coxiella burnetii}
Probab=22.55 E-value=69 Score=27.13 Aligned_cols=50 Identities=14% Similarity=-0.057 Sum_probs=28.5
Q ss_pred HHhhHHHhcC----CCceEEEeehhhhHHHHHHhc---CCccC-ceeh--HHH-HHHhhcc
Q 019356 91 VKACKPALES----SYITKVIHDCKRDSEALYFQF---GIKLH-NVVD--TQI-AYSLIEE 140 (342)
Q Consensus 91 ~~~L~~lLe~----~~i~KV~hd~k~Dl~~L~~~~---Gi~l~-~vfD--tql-Aa~LL~~ 140 (342)
...+.+++.. ....-|+||+.+|...|.+.+ |..+. .++| |.- .++.+.|
T Consensus 89 ~~~~l~fl~~~~~~~~~~lvghn~~FD~~FL~~~~~~~~~~~~~~~iDvsTl~elar~~~P 149 (186)
T 3tr8_A 89 ETLTLAFLEKYVSAGKSPLCGNSVCQDRRFLSRYMPRLNQFFHYRHLDVTTLKILAQRWAP 149 (186)
T ss_dssp HHHHHHHHTTTSCTTCSCEEESSTHHHHHHHHHHCHHHHHHSCSCEEEHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHhccCCCcEEEEEcHHHhHHHHHHHHHHcCCCCCCcEEeHHHHHHHHHHHCc
Confidence 3445556621 223459999999999996432 33332 3677 543 4444444
Done!