Query 019357
Match_columns 342
No_of_seqs 174 out of 1000
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 08:48:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019357.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019357hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1944 Peroxisomal membrane p 100.0 1.7E-38 3.8E-43 294.6 16.2 173 164-336 36-215 (222)
2 PF04117 Mpv17_PMP22: Mpv17 / 99.9 1.3E-22 2.7E-27 155.8 4.9 68 267-334 1-68 (68)
3 TIGR02163 napH_ ferredoxin-typ 34.1 1E+02 0.0022 29.3 6.0 79 207-285 4-101 (255)
4 PF15539 CAF1-p150_C2: CAF1 co 28.9 54 0.0012 32.5 3.1 13 85-97 76-88 (292)
5 PF09726 Macoilin: Transmembra 28.2 1.2E+02 0.0025 33.7 5.9 27 300-328 86-112 (697)
6 COG0534 NorM Na+-driven multid 23.7 8E+02 0.017 25.1 11.3 94 179-273 64-162 (455)
7 PF03988 DUF347: Repeat of Unk 22.7 2.2E+02 0.0048 21.1 4.8 46 178-230 4-49 (55)
8 PF11998 DUF3493: Protein of u 18.3 4.5E+02 0.0098 21.1 6.0 50 205-255 14-63 (75)
9 PF03818 MadM: Malonate/sodium 18.3 4.7E+02 0.01 20.3 5.8 32 169-200 4-35 (60)
10 PF10929 DUF2811: Protein of u 17.0 1.5E+02 0.0032 22.9 2.7 31 191-221 10-40 (57)
No 1
>KOG1944 consensus Peroxisomal membrane protein MPV17 and related proteins [General function prediction only]
Probab=100.00 E-value=1.7e-38 Score=294.61 Aligned_cols=173 Identities=42% Similarity=0.782 Sum_probs=162.4
Q ss_pred HHHHHHHHH-HhhCChhHHHHHHHHHH-HHHHHHHHhhc--C---CCCccHHHHHHHHhhhhhhhhhhHhHHHHHHhhhC
Q 019357 164 GFVGWYLAM-VKSRPVLTKSATCSLIY-IAADLSSQTIA--S---SESYDLVRTLRMGGYGMLILGPTLHFWFNFVSKLF 236 (342)
Q Consensus 164 ~lla~Y~~~-L~r~PLlTKsvTsgvL~-~lGDviAQ~I~--~---~~~~D~~Rt~rfal~G~~~~GPl~H~WY~~Ldrlf 236 (342)
++..|+... ...+|+++++++.+.+. .+||+++|.++ . .+.+|+.|++||+++|+++.||..|+||..||+++
T Consensus 36 ~l~~~~~~~~~~~~~~l~~~i~~~~~~~~~~d~~~q~~~~~~~~~~~~~d~~rtlr~~~~G~~f~gp~~~~Wy~~L~~~~ 115 (222)
T KOG1944|consen 36 GLVLWLLLKRFSLYPLLTKAITTSLLLAAAGDVISQSLEGRSKKLFQTLDLTRTLRMGIFGFLFVGPTLHYWYRLLSKLF 115 (222)
T ss_pred hhhhhhhhhhhhhhhHHHHHHHHHHHHHHhchhhhhhhhhhcccccccccHHHHHHHHhhhhheeccchhHHHHHHHHHc
Confidence 355555443 56799999999999988 99999999998 2 46799999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHhhhhhhhhHHHHHHHHHHhhhcCCChHHHHHHHhhchHHHHhhccccchHHHhhhhceecCCcchhh
Q 019357 237 PKQDLVATLKKMAMGQTIYGPIMTVVFLSLNASLQGESGEEIVARLKRDLLPTMFKGVMYWPVCDFITFRFTPVHLQPLV 316 (342)
Q Consensus 237 P~~~l~tvlkKVllDQlVfaPl~~~~Ff~~~~lLeG~S~~~i~~kLk~dy~~tl~asw~VWPpaq~INF~fVP~~~RVLf 316 (342)
|.+++.++++|+++||++++|+.+.+||.+++++||++.+++.++++++++|+++++|++||++|+|||+|||+++|++|
T Consensus 116 p~~~~~~~~~kvl~dql~~~P~~~~~ff~~~~~legk~~~~~~~~~~~~~~p~l~~~~~~WP~~q~inF~~VP~~~rvl~ 195 (222)
T KOG1944|consen 116 PKKTLITVVKKVLLDQLVFAPLFIVVFFLLMGLLEGKTNEEAKAKLKRKFWPTLKANWMVWPLVQFINFRLVPLQYRVLF 195 (222)
T ss_pred cCccHHHHHHHHHHhhhhhchHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhhheecchhheeeeEEccccceehh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHHHhcccc
Q 019357 317 SNSFSYLWTIYLTYTASLEK 336 (342)
Q Consensus 317 vN~Vs~~WniYLS~ma~r~~ 336 (342)
+|+++++||+|||+++++..
T Consensus 196 ~~~vsl~W~~~Ls~~~~~~~ 215 (222)
T KOG1944|consen 196 VNIVSLVWNTYLSYKNASLV 215 (222)
T ss_pred hhhHHHHHHHHHHHHhhccc
Confidence 99999999999999999884
No 2
>PF04117 Mpv17_PMP22: Mpv17 / PMP22 family ; InterPro: IPR007248 The 22 kDa peroxisomal membrane protein (PMP22) is a major component of peroxisomal membranes. PMP22 seems to be involved in pore-forming activity and may contribute to the unspecific permeability of the organelle membrane. PMP22 is synthesised on free cytosolic ribosomes and then directed to the peroxisome membrane by specific targeting information []. Mpv17 is a closely related peroxisomal protein involved in the development of early-onset glomerulosclerosis []. A member of this family found in Saccharomyces cerevisiae (Baker's yeast) is an integral membrane protein of the inner mitochondrial membrane and has been suggested to play a role in mitochondrial function during heat shock [].; GO: 0016021 integral to membrane
Probab=99.86 E-value=1.3e-22 Score=155.77 Aligned_cols=68 Identities=38% Similarity=0.745 Sum_probs=66.5
Q ss_pred HhhhcCCChHHHHHHHhhchHHHHhhccccchHHHhhhhceecCCcchhhHhHHHHHHHHHHHHHhcc
Q 019357 267 NASLQGESGEEIVARLKRDLLPTMFKGVMYWPVCDFITFRFTPVHLQPLVSNSFSYLWTIYLTYTASL 334 (342)
Q Consensus 267 ~~lLeG~S~~~i~~kLk~dy~~tl~asw~VWPpaq~INF~fVP~~~RVLfvN~Vs~~WniYLS~ma~r 334 (342)
|+++||+++++++++++++|+++++++|++|||+|++||.|||+++|++|+|+|+++||+|||+++||
T Consensus 1 Mg~l~g~s~~~~~~~l~~~~~~~~~~~~~~Wp~~~~vnF~~vP~~~Rv~~~~~v~~~W~~~LS~~~~r 68 (68)
T PF04117_consen 1 MGLLEGKSWEEIKEKLKRDYWPTLKASWKFWPPAQIVNFRYVPPHYRVLFVNVVSFFWNTYLSYIANR 68 (68)
T ss_pred CCcccCCCHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHhcccChhhhhhhhhhHHHHHHHHHHHHhcC
Confidence 67999999999999999999999999999999999999999999999999999999999999999986
No 3
>TIGR02163 napH_ ferredoxin-type protein, NapH/MauN family. Most members of this family are the NapH protein, found next to NapG,in operons that encode the periplasmic nitrate reductase. Some species with this reductase lack NapC but accomplish electron transfer to NapAB in some other manner, likely to involve NapH, NapG, and/or some other protein. A few members of this protein are designated MauN and are found in methylamine utilization operons in species that appear to lack a periplasmic nitrate reductase.
Probab=34.11 E-value=1e+02 Score=29.34 Aligned_cols=79 Identities=23% Similarity=0.405 Sum_probs=50.7
Q ss_pred HHHHHHHHhhhhhhhhhhHhHHH--HHHh--h---hCCCchhHHHHHHHHhhhhhhhhHHHHHHH--HHHhhhcCC----
Q 019357 207 LVRTLRMGGYGMLILGPTLHFWF--NFVS--K---LFPKQDLVATLKKMAMGQTIYGPIMTVVFL--SLNASLQGE---- 273 (342)
Q Consensus 207 ~~Rt~rfal~G~~~~GPl~H~WY--~~Ld--r---lfP~~~l~tvlkKVllDQlVfaPl~~~~Ff--~~~~lLeG~---- 273 (342)
+||+..+++...++.||..+.|. +-|. + .+|..+...++.-++....+..+++....+ .+.+++-|+
T Consensus 4 ~r~~~~~~~~~lf~~~~~~~~~~~~G~l~~s~~~~~~~l~dP~~~lq~~~a~~~~~~~~~~~~~iv~~~~~l~~GR~fCg 83 (255)
T TIGR02163 4 LRRLVQLSILGLFLLGPYAGVWILKGNLSSSRLLGTIPLSDPLITLQILLAGHSPPTNALIGALIIVAFYALFGGRAFCS 83 (255)
T ss_pred HHHHHHHHHHHHHHcchhhcceEEEecchHHHhcCCccCcCHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHhccccee
Confidence 68999999999988999888775 3333 2 245566666777777777666666554433 333566665
Q ss_pred ------ChHHHHHHHhhc
Q 019357 274 ------SGEEIVARLKRD 285 (342)
Q Consensus 274 ------S~~~i~~kLk~d 285 (342)
...|...+++++
T Consensus 84 wiCP~g~~~el~~~l~~k 101 (255)
T TIGR02163 84 WVCPVNLVTDFAAWLRRK 101 (255)
T ss_pred ccCCchHHHHHHHHHHHh
Confidence 245555555543
No 4
>PF15539 CAF1-p150_C2: CAF1 complex subunit p150, region binding to CAF1-p60 at C-term
Probab=28.94 E-value=54 Score=32.47 Aligned_cols=13 Identities=46% Similarity=0.588 Sum_probs=11.0
Q ss_pred hHhhhcCCCCccc
Q 019357 85 LLQSHGGVNNKKI 97 (342)
Q Consensus 85 ~~~~~~~~~~~~~ 97 (342)
+.+.||.||++|+
T Consensus 76 lpLlHGNvN~sk~ 88 (292)
T PF15539_consen 76 LPLLHGNVNGSKF 88 (292)
T ss_pred HHHhcCCcccchH
Confidence 4678999999985
No 5
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=28.19 E-value=1.2e+02 Score=33.67 Aligned_cols=27 Identities=37% Similarity=0.791 Sum_probs=14.7
Q ss_pred HHhhhhceecCCcchhhHhHHHHHHHHHH
Q 019357 300 CDFITFRFTPVHLQPLVSNSFSYLWTIYL 328 (342)
Q Consensus 300 aq~INF~fVP~~~RVLfvN~Vs~~WniYL 328 (342)
..+|+|.|||+++ ||+-.-.++|.-|+
T Consensus 86 ~d~~~~~~~p~~~--~~~~~~~~v~~~~~ 112 (697)
T PF09726_consen 86 SDLICLFFIPVHW--LFFAASTYVWVQYV 112 (697)
T ss_pred HHHHHHHHHHHHH--HHHHHhHHHHHHHh
Confidence 4566777777654 33333345565444
No 6
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=23.69 E-value=8e+02 Score=25.12 Aligned_cols=94 Identities=18% Similarity=0.194 Sum_probs=54.6
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHhhhhhhhh-hhHhHHHHHHhh---hCCC-chhHHHHHHHHhhhh
Q 019357 179 LTKSATCSLIYIAADLSSQTIASSESYDLVRTLRMGGYGMLILG-PTLHFWFNFVSK---LFPK-QDLVATLKKMAMGQT 253 (342)
Q Consensus 179 lTKsvTsgvL~~lGDviAQ~I~~~~~~D~~Rt~rfal~G~~~~G-Pl~H~WY~~Ldr---lfP~-~~l~tvlkKVllDQl 253 (342)
+.-++..++..+.+=++||.+-.++.-+.+++++.+++-.++.| ++.-..+-+.|. ++.. .+......+- +--.
T Consensus 64 ~~~~~~~gl~~g~~~liaq~~Ga~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Y-l~i~ 142 (455)
T COG0534 64 LIIAIFIGLGTGTTVLVAQAIGAGDRKKAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEY-LRII 142 (455)
T ss_pred HHHHHHHHHHHhHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHH-HHHH
Confidence 44567778888889999999864555677888888888666666 444334433443 3433 2233222222 2222
Q ss_pred hhhhHHHHHHHHHHhhhcCC
Q 019357 254 IYGPIMTVVFLSLNASLQGE 273 (342)
Q Consensus 254 VfaPl~~~~Ff~~~~lLeG~ 273 (342)
+++-....++++..++++|.
T Consensus 143 ~~~~~~~~~~~~~~~~lr~~ 162 (455)
T COG0534 143 LLGAPFALLSFVLSGILRGL 162 (455)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 33444445566666677654
No 7
>PF03988 DUF347: Repeat of Unknown Function (DUF347) ; InterPro: IPR007136 This repeat is found as four tandem repeats in a family of bacterial membrane proteins. Each repeat contains two transmembrane regions and a conserved tryptophan.
Probab=22.69 E-value=2.2e+02 Score=21.08 Aligned_cols=46 Identities=22% Similarity=0.223 Sum_probs=31.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHhhhhhhhhhhHhHHHH
Q 019357 178 VLTKSATCSLIYIAADLSSQTIASSESYDLVRTLRMGGYGMLILGPTLHFWFN 230 (342)
Q Consensus 178 LlTKsvTsgvL~~lGDviAQ~I~~~~~~D~~Rt~rfal~G~~~~GPl~H~WY~ 230 (342)
++++.++..+-..+||.++|. .++.......+++.++...+. .||.
T Consensus 4 W~a~ilt~~lGt~~~D~l~~~------lglg~~~~~~~~~~~l~~~~~-~~~~ 49 (55)
T PF03988_consen 4 WIAKILTTTLGTTAGDFLSKT------LGLGYLISTLIFAALLAVVLA-LWYR 49 (55)
T ss_pred HHHHHHHHHhHHHHHHHHHhc------cCccHHHHHHHHHHHHHHHHH-HHHH
Confidence 467889999999999999994 455566666666665444433 4553
No 8
>PF11998 DUF3493: Protein of unknown function (DUF3493); InterPro: IPR021883 This family of proteins is functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 79 to 331 amino acids in length.
Probab=18.34 E-value=4.5e+02 Score=21.14 Aligned_cols=50 Identities=24% Similarity=0.165 Sum_probs=35.8
Q ss_pred ccHHHHHHHHhhhhhhhhhhHhHHHHHHhhhCCCchhHHHHHHHHhhhhhh
Q 019357 205 YDLVRTLRMGGYGMLILGPTLHFWFNFVSKLFPKQDLVATLKKMAMGQTIY 255 (342)
Q Consensus 205 ~D~~Rt~rfal~G~~~~GPl~H~WY~~LdrlfP~~~l~tvlkKVllDQlVf 255 (342)
-.+-|.+|+++||++.. --.-.-+-.+-++..+.++..++.-+.+|-...
T Consensus 14 ~aPfR~lR~f~y~a~~a-Sa~iG~~i~~~rl~a~~~l~~~l~nlaI~igav 63 (75)
T PF11998_consen 14 QAPFRGLRRFFYGAFGA-SAGIGLFIFLFRLIAGPDLNEALPNLAIQIGAV 63 (75)
T ss_pred HCchHHHHHHHHHHHHH-HHHHHHHHHHHHHHcCccHHHHhhhHhHHHHHH
Confidence 45669999999999744 434456777788888877777777777765443
No 9
>PF03818 MadM: Malonate/sodium symporter MadM subunit; InterPro: IPR018402 The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM.The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=18.33 E-value=4.7e+02 Score=20.35 Aligned_cols=32 Identities=13% Similarity=0.134 Sum_probs=29.6
Q ss_pred HHHHHhhCChhHHHHHHHHHHHHHHHHHHhhc
Q 019357 169 YLAMVKSRPVLTKSATCSLIYIAADLSSQTIA 200 (342)
Q Consensus 169 Y~~~L~r~PLlTKsvTsgvL~~lGDviAQ~I~ 200 (342)
-.+.++++.|+|.-+.-|+++.++..++-+++
T Consensus 4 i~~vl~~ngLitaFa~vG~~m~~S~~lS~~LT 35 (60)
T PF03818_consen 4 IEKVLTKNGLITAFAVVGIIMWVSYWLSKKLT 35 (60)
T ss_pred HHHHHhhCchHHHHHHHHHHHHHHHHHHHHHh
Confidence 46788999999999999999999999999998
No 10
>PF10929 DUF2811: Protein of unknown function (DUF2811); InterPro: IPR021231 This is a bacterial family of uncharacterised proteins.
Probab=16.98 E-value=1.5e+02 Score=22.86 Aligned_cols=31 Identities=16% Similarity=0.221 Sum_probs=24.9
Q ss_pred HHHHHHHhhcCCCCccHHHHHHHHhhhhhhh
Q 019357 191 AADLSSQTIASSESYDLVRTLRMGGYGMLIL 221 (342)
Q Consensus 191 lGDviAQ~I~~~~~~D~~Rt~rfal~G~~~~ 221 (342)
+-+.+.+.|+....||-.|.+..++-|+++.
T Consensus 10 L~~~m~~fie~hP~WDQ~Rl~~aALa~FL~Q 40 (57)
T PF10929_consen 10 LHQAMKDFIETHPNWDQYRLFQAALAGFLLQ 40 (57)
T ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHHHHH
Confidence 3456777787778899999999999998754
Done!