Query 019357
Match_columns 342
No_of_seqs 174 out of 1000
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 14:50:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019357.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019357hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1xrd_A LH-1, light-harvesting 18.9 98 0.0034 22.3 3.2 30 204-233 7-42 (52)
2 2ksd_A Aerobic respiration con 10.4 43 0.0015 27.8 -0.8 65 167-232 9-76 (115)
3 1nha_A TFIIF-alpha, transcript 8.4 1.7E+02 0.0058 22.9 1.9 35 146-184 5-39 (82)
4 2kii_A Putative uncharacterize 8.0 3.3E+02 0.011 23.1 4.0 70 222-291 3-78 (181)
5 3ebb_A Phospholipase A2-activa 7.9 1.2E+02 0.0042 28.3 1.2 42 13-63 22-63 (304)
6 2vqc_A Hypothetical 13.2 kDa p 7.2 1.1E+02 0.0037 24.8 0.3 27 190-216 31-58 (118)
7 1z2z_A Probable tRNA pseudouri 5.3 2.2E+02 0.0075 28.0 1.4 30 305-334 258-288 (446)
8 4b4s_A BCL-2-like protein 10; 4.7 7.7E+02 0.026 21.2 4.4 17 204-220 83-99 (175)
9 1k3k_A Functional anti-apoptot 4.6 4.7E+02 0.016 22.2 2.9 26 193-219 71-96 (158)
10 1p58_D Envelope protein M; fla 4.1 9.7E+02 0.033 18.0 4.0 36 164-200 27-62 (75)
No 1
>1xrd_A LH-1, light-harvesting protein B-880, alpha chain; membrane spanning helix, pigment binding, photosynthesis, membrane protein; NMR {Rhodospirillum rubrum} SCOP: f.3.1.1
Probab=18.94 E-value=98 Score=22.33 Aligned_cols=30 Identities=23% Similarity=0.359 Sum_probs=22.9
Q ss_pred CccHHHHHHHHhhhhhhhhhhHhHH------HHHHh
Q 019357 204 SYDLVRTLRMGGYGMLILGPTLHFW------FNFVS 233 (342)
Q Consensus 204 ~~D~~Rt~rfal~G~~~~GPl~H~W------Y~~Ld 233 (342)
-+|++|++.......+..+-+.|+- |+|||
T Consensus 7 ~fDPrr~Lva~~~fl~vlAl~IHfilLSt~~fNWl~ 42 (52)
T 1xrd_A 7 LFDPRQALVGLATFLFVLALLIHFILLSTERFNWLE 42 (52)
T ss_dssp TSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEchhHHHHHHHHHHHHHHHHHHHHhhccCCccccc
Confidence 3799998877777777788888875 56666
No 2
>2ksd_A Aerobic respiration control sensor protein ARCB; methods development, histidine kinase receptor, membrane domain, two-helical hairpin; NMR {Escherichia coli}
Probab=10.43 E-value=43 Score=27.84 Aligned_cols=65 Identities=14% Similarity=0.262 Sum_probs=43.9
Q ss_pred HHHHHHHhhCChhHHHHHHHHHHHHHHHHHHhhc---CCCCccHHHHHHHHhhhhhhhhhhHhHHHHHH
Q 019357 167 GWYLAMVKSRPVLTKSATCSLIYIAADLSSQTIA---SSESYDLVRTLRMGGYGMLILGPTLHFWFNFV 232 (342)
Q Consensus 167 a~Y~~~L~r~PLlTKsvTsgvL~~lGDviAQ~I~---~~~~~D~~Rt~rfal~G~~~~GPl~H~WY~~L 232 (342)
..|-+++.+--.+.-++.++++..+-+++.|.+. -.++.+|.-.+|-.+||.+ .+|+.-|.+..+
T Consensus 9 q~yvd~v~rlG~~rfSlL~~~~l~v~A~~~q~~~~~~~~G~v~~~Di~rsI~Fgli-~aP~viYFls~v 76 (115)
T 2ksd_A 9 QYYVDLMMKLGLVRFSMLLALALVVLAIVVQMAVTMVLHGQVESIDVIRSIFFGLL-ITPWAVYFLSVV 76 (115)
T ss_dssp ------CCCSSTTSSCCSHHHHHHHHHHHHHHHHHHHSCCCSSSSSCCSTTTHHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHhhhhcccchHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 4567777777777777788888888888999865 3455666666667778874 789888777664
No 3
>1nha_A TFIIF-alpha, transcription initiation factor IIF, alpha subunit; transcription factor, human general transcription factor TFIIF, RAP74; NMR {Homo sapiens} SCOP: a.4.5.30 PDB: 1onv_A
Probab=8.37 E-value=1.7e+02 Score=22.94 Aligned_cols=35 Identities=20% Similarity=0.169 Sum_probs=16.0
Q ss_pred cchhhhhcccccCcchhhHHHHHHHHHHhhCChhHHHHH
Q 019357 146 FSSAYAASSARTASFSEVGFVGWYLAMVKSRPVLTKSAT 184 (342)
Q Consensus 146 ~~~~~~~~~~~~~s~~~~~lla~Y~~~L~r~PLlTKsvT 184 (342)
++|+ +++++++.+.-+..-+.+|+ .+.|+.|+=+.
T Consensus 5 p~s~-~~~~~~~~~~iTEe~VRryL---~rkPmTT~dLl 39 (82)
T 1nha_A 5 PPSG-KTTPNSGDVQVTEDAVRRYL---TRKPMTTKDLL 39 (82)
T ss_dssp ------------CCCCCHHHHHHHH---HHSCBCHHHHH
T ss_pred CCcc-CcCCccCCCCCCHHHHHHHH---HhCCccHHHHH
Confidence 3444 34555555556666666664 48999876544
No 4
>2kii_A Putative uncharacterized protein; H-NOX, unknown function; HET: HEM; NMR {Shewanella oneidensis} PDB: 2kil_A*
Probab=7.99 E-value=3.3e+02 Score=23.11 Aligned_cols=70 Identities=13% Similarity=0.041 Sum_probs=47.5
Q ss_pred hhhHhHHHHHHhhhCCCchhHHHHHHHHhhhhhhhhHH------HHHHHHHHhhhcCCChHHHHHHHhhchHHHHh
Q 019357 222 GPTLHFWFNFVSKLFPKQDLVATLKKMAMGQTIYGPIM------TVVFLSLNASLQGESGEEIVARLKRDLLPTMF 291 (342)
Q Consensus 222 GPl~H~WY~~LdrlfP~~~l~tvlkKVllDQlVfaPl~------~~~Ff~~~~lLeG~S~~~i~~kLk~dy~~tl~ 291 (342)
|-+...|..++...++...|..++.+.-++..+|.+.. +.-.+...+-.-|.+.+++++.+-+.+...+.
T Consensus 3 G~I~~~~~~~v~~~~G~e~w~~i~~~a~~~~~~f~~~~~Y~D~~~~~lv~a~s~~~g~~~~~ll~~fG~~~~~~~~ 78 (181)
T 2kii_A 3 GIIFNVLEDMVVAQCGMSVWNELLEKHAPKDRVYVSAKSYAESELFSIVQDVAQRLNMPIQDVVKAFGQFLFNGLA 78 (181)
T ss_dssp CHHHHHHHHHHHHHTCHHHHHHHHHHHCCSSCCCCSSCCTTTTHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred ehHHHHHHHHHHHHcCHHHHHHHHHHhCCCCCceeeccccCHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 45577888888888887777777777777666665543 23334444555688888888877666655443
No 5
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=7.90 E-value=1.2e+02 Score=28.32 Aligned_cols=42 Identities=29% Similarity=0.384 Sum_probs=16.3
Q ss_pred CCCCccccccccCCCCCCCCCCCCcccccccccCCccchhhhhhHhhhhhh
Q 019357 13 SNDPYLRGSKYISPSTPPKQHPVSDSVSSKYFPLKPLKTHRQTKAAGKQRK 63 (342)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (342)
.-|||--++.|.++.+ +.+.||||.+-.-+-.|.+..+-.+|
T Consensus 22 ~~Dp~~~~~~y~p~~~---------~~~~k~~P~~~yl~f~~an~~~i~~K 63 (304)
T 3ebb_A 22 GVDPFTGNSAYRSAAS---------KTMNIYFPKKEAVTFDQANPTQILGK 63 (304)
T ss_dssp ---------------------------CCSSCCCCSCCCCCCCCHHHHHHH
T ss_pred CCCCCCCCCCcCCCCC---------CCCCCcCCCccceehhccCHHHHHHH
Confidence 4499999999987763 23368999887777777665554433
No 6
>2vqc_A Hypothetical 13.2 kDa protein; winged-helix, crenarchaeal, DNA-binding protein, thermo protein, sulfolobus spindle virus; 2.3A {Sulfolobus virus-like particle SSV1} SCOP: a.4.5.78
Probab=7.21 E-value=1.1e+02 Score=24.78 Aligned_cols=27 Identities=19% Similarity=0.197 Sum_probs=20.1
Q ss_pred HHHHHHHHhhc-CCCCccHHHHHHHHhh
Q 019357 190 IAADLSSQTIA-SSESYDLVRTLRMGGY 216 (342)
Q Consensus 190 ~lGDviAQ~I~-~~~~~D~~Rt~rfal~ 216 (342)
.+-|++||.-. -...++..|+++|.+-
T Consensus 31 sledilaqfeis~~sayniqr~l~~ice 58 (118)
T 2vqc_A 31 TLEDILAQFEISVPSAYNIQRALKAICE 58 (118)
T ss_dssp CHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHheeccchHhHHHHHHHHHHh
Confidence 36799999865 2345889999998753
No 7
>1z2z_A Probable tRNA pseudouridine synthase D; alpha-beta protein., structural genomics, PSI, protein structure initiative; 2.60A {Methanosarcina mazei}
Probab=5.30 E-value=2.2e+02 Score=27.99 Aligned_cols=30 Identities=27% Similarity=0.536 Sum_probs=24.6
Q ss_pred hceecCCcchhhHhHH-HHHHHHHHHHHhcc
Q 019357 305 FRFTPVHLQPLVSNSF-SYLWTIYLTYTASL 334 (342)
Q Consensus 305 F~fVP~~~RVLfvN~V-s~~WniYLS~ma~r 334 (342)
+.-+|...|.+|++.. +++||..||..-..
T Consensus 258 ~~~ipr~lr~myv~AyQS~lfN~~lS~Ri~~ 288 (446)
T 1z2z_A 258 FRVLPQNLYRMFVHGYQSYIYNIILCRRIEA 288 (446)
T ss_dssp GTTSCHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4579999999988866 99999999966543
No 8
>4b4s_A BCL-2-like protein 10; apoptosis; HET: PG4; 1.90A {Homo sapiens}
Probab=4.67 E-value=7.7e+02 Score=21.22 Aligned_cols=17 Identities=6% Similarity=0.034 Sum_probs=14.7
Q ss_pred CccHHHHHHHHhhhhhh
Q 019357 204 SYDLVRTLRMGGYGMLI 220 (342)
Q Consensus 204 ~~D~~Rt~rfal~G~~~ 220 (342)
.++|.|.+.++.||+.+
T Consensus 83 ~inWGRIV~l~~F~g~l 99 (175)
T 4b4s_A 83 GPTWGRVVTLVTFAGTL 99 (175)
T ss_dssp CCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 59999999999998863
No 9
>1k3k_A Functional anti-apoptotic factor VBCL-2 homolog; solution structure, apoptosis; NMR {Human herpesvirus 8} SCOP: f.1.4.1
Probab=4.56 E-value=4.7e+02 Score=22.19 Aligned_cols=26 Identities=15% Similarity=0.109 Sum_probs=18.8
Q ss_pred HHHHHhhcCCCCccHHHHHHHHhhhhh
Q 019357 193 DLSSQTIASSESYDLVRTLRMGGYGML 219 (342)
Q Consensus 193 DviAQ~I~~~~~~D~~Rt~rfal~G~~ 219 (342)
-++.+.+ +.+.++|.|.+.+..||+.
T Consensus 71 ~Va~elF-~DG~iNWGRIVaLfaF~g~ 96 (158)
T 1k3k_A 71 LSMLQVS-GDGNMNWGRALAILTFGSF 96 (158)
T ss_dssp THHHHHC-SSCSCCHHHHHHHHHHHHH
T ss_pred HHHHHHh-cCCCCCHHHHHHHHHHHHH
Confidence 3333333 4566999999999999886
No 10
>1p58_D Envelope protein M; flavivirus, flaviviridae, glycoprotein E from borne encephalitis virus, membrane protein M, cryo-EM, ICOS virus; 9.50A {Dengue virus 2 puerto rico} SCOP: i.17.1.1
Probab=4.06 E-value=9.7e+02 Score=18.04 Aligned_cols=36 Identities=17% Similarity=0.099 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHHhhc
Q 019357 164 GFVGWYLAMVKSRPVLTKSATCSLIYIAADLSSQTIA 200 (342)
Q Consensus 164 ~lla~Y~~~L~r~PLlTKsvTsgvL~~lGDviAQ~I~ 200 (342)
.-+..-.++.=|+|..+-++. .+.+.+|+...|++.
T Consensus 27 ~~l~kvE~WilrNp~~al~a~-~~~w~lG~~~~Qrvi 62 (75)
T 1p58_D 27 KHAQRIETWILRHPGFTIMAA-ILAYTIGTTHFQRVL 62 (75)
T ss_pred HHHHHHHHHHHHChHHHHHHH-HHHHHHcCChHHHHH
Confidence 344556778889999888888 888899999999874
Done!