Query 019357
Match_columns 342
No_of_seqs 174 out of 1000
Neff 4.7
Searched_HMMs 13730
Date Mon Mar 25 14:50:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019357.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/019357hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1xrda1 f.3.1.1 (A:1-52) Light 23.3 33 0.0024 23.1 3.2 30 204-233 7-42 (52)
2 d2vqca1 a.4.5.78 (A:4-73) F-11 11.3 28 0.002 24.2 0.3 26 190-215 22-48 (70)
3 d1khda1 a.46.2.1 (A:12-80) Ant 8.5 2E+02 0.015 18.8 4.2 52 228-280 2-56 (69)
4 d1k3ka_ f.1.4.1 (A:) Bcl-2 hom 8.5 1.1E+02 0.0081 23.9 3.2 31 188-219 66-96 (146)
5 d1puee_ a.4.5.21 (E:) Transcri 5.2 78 0.0057 23.1 0.4 23 55-77 42-65 (88)
6 d2v9va1 a.4.5.35 (A:377-437) C 4.8 1.6E+02 0.012 19.4 1.8 22 193-214 5-27 (61)
7 d2cvza1 a.100.1.1 (A:158-289) 4.7 5.6E+02 0.041 18.1 6.1 59 178-238 9-68 (132)
8 d1jt6a2 a.121.1.1 (A:73-187) M 4.2 3.7E+02 0.027 19.4 3.8 40 189-231 53-93 (115)
9 d1vi0a2 a.121.1.1 (A:78-194) H 4.1 5.3E+02 0.039 17.1 5.8 30 189-219 51-83 (117)
10 d1h2vc1 a.118.1.14 (C:29-290) 4.1 6.7E+02 0.049 20.3 6.0 70 241-310 36-114 (262)
No 1
>d1xrda1 f.3.1.1 (A:1-52) Light-harvesting complex subunits {Rhodospirillum rubrum [TaxId: 1085]}
Probab=23.28 E-value=33 Score=23.08 Aligned_cols=30 Identities=23% Similarity=0.359 Sum_probs=22.7
Q ss_pred CccHHHHHHHHhhhhhhhhhhHhHH------HHHHh
Q 019357 204 SYDLVRTLRMGGYGMLILGPTLHFW------FNFVS 233 (342)
Q Consensus 204 ~~D~~Rt~rfal~G~~~~GPl~H~W------Y~~Ld 233 (342)
-+|++|++.......++.+-+.|+- |+|||
T Consensus 7 ~fDPRr~lva~~~fL~~LAl~IHfiLLSt~rfNWle 42 (52)
T d1xrda1 7 LFDPRQALVGLATFLFVLALLIHFILLSTERFNWLE 42 (52)
T ss_dssp TSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHhccCcccccc
Confidence 3799999887777777778888874 56666
No 2
>d2vqca1 a.4.5.78 (A:4-73) F-112 {Sulfolobus virus-like particle SSV1 [TaxId: 244589]}
Probab=11.26 E-value=28 Score=24.17 Aligned_cols=26 Identities=19% Similarity=0.239 Sum_probs=19.5
Q ss_pred HHHHHHHHhhc-CCCCccHHHHHHHHh
Q 019357 190 IAADLSSQTIA-SSESYDLVRTLRMGG 215 (342)
Q Consensus 190 ~lGDviAQ~I~-~~~~~D~~Rt~rfal 215 (342)
.+-|++||.-. -...++..|++++.+
T Consensus 22 ~ledilaqfeis~~~ayniqr~l~~ic 48 (70)
T d2vqca1 22 TLEDILAQFEISVPSAYNIQRALKAIC 48 (70)
T ss_dssp CHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHheeccchHhHHHHHHHHHH
Confidence 36799999865 234588999999875
No 3
>d1khda1 a.46.2.1 (A:12-80) Anthranilate phosphoribosyltransferase (TrpD) {Pectobacterium carotovorum [TaxId: 554]}
Probab=8.54 E-value=2e+02 Score=18.78 Aligned_cols=52 Identities=19% Similarity=0.213 Sum_probs=32.9
Q ss_pred HHHHHhhhCCCchhHHHHHHHHhhhhh---hhhHHHHHHHHHHhhhcCCChHHHHH
Q 019357 228 WFNFVSKLFPKQDLVATLKKMAMGQTI---YGPIMTVVFLSLNASLQGESGEEIVA 280 (342)
Q Consensus 228 WY~~LdrlfP~~~l~tvlkKVllDQlV---faPl~~~~Ff~~~~lLeG~S~~~i~~ 280 (342)
|-..|+++..+..+..-=.+-++|+++ ..+...+.|+..+ -..|.+.+|+..
T Consensus 2 ~~~il~kl~~g~~Ls~ee~~~~~~~i~~g~~~d~qiaafL~al-~~kg~t~dEi~g 56 (69)
T d1khda1 2 HQPILEKLFKSQSMTQEESHQLFAAIVRGELEDSQLAAALISM-KMRGERPEEIAG 56 (69)
T ss_dssp CHHHHHHHHTTCCCCHHHHHHHHHHHTTTCSCHHHHHHHHHHH-HHHCCCHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHH-HHhCCCHHHHHH
Confidence 445677777665543333344455544 3567788888776 567888888665
No 4
>d1k3ka_ f.1.4.1 (A:) Bcl-2 homolog {Kaposi's sarcoma-associated herpesvirus [TaxId: 37296]}
Probab=8.51 E-value=1.1e+02 Score=23.90 Aligned_cols=31 Identities=16% Similarity=0.078 Sum_probs=23.0
Q ss_pred HHHHHHHHHHhhcCCCCccHHHHHHHHhhhhh
Q 019357 188 IYIAADLSSQTIASSESYDLVRTLRMGGYGML 219 (342)
Q Consensus 188 L~~lGDviAQ~I~~~~~~D~~Rt~rfal~G~~ 219 (342)
.-..+.++.+.+. .+..||.|.+.+..||+.
T Consensus 66 ~~~f~~V~~elF~-DG~~NWGRIVaLfaFg~~ 96 (146)
T d1k3ka_ 66 IDQLGLSMLQVSG-DGNMNWGRALAILTFGSF 96 (146)
T ss_dssp HHHHHTHHHHHCS-SCSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHH
Confidence 3445666666664 566899999999999875
No 5
>d1puee_ a.4.5.21 (E:) Transcription factor PU.1, residues 171-259 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=5.23 E-value=78 Score=23.13 Aligned_cols=23 Identities=35% Similarity=0.488 Sum_probs=15.7
Q ss_pred hhHhhhhhhhhccccc-cchhhhh
Q 019357 55 TKAAGKQRKKRKSENY-KMRGVLK 77 (342)
Q Consensus 55 ~~~~~~~~~~~~~~~~-~~~~~~~ 77 (342)
.+-=|.+++.|+.-|| +|+++|-
T Consensus 42 A~lWG~~K~Nr~~MnYeklSRaLR 65 (88)
T d1puee_ 42 AHRWGIQKGNRKKMTYEKMARALR 65 (88)
T ss_dssp HHHHHHHHTCSSCCCHHHHHHHHH
T ss_pred HHHHHhhcCCCCCCcHHHHHHHHH
Confidence 4445777766777787 6777754
No 6
>d2v9va1 a.4.5.35 (A:377-437) C-terminal fragment of elongation factor SelB {Moorella thermoacetica [TaxId: 1525]}
Probab=4.76 E-value=1.6e+02 Score=19.40 Aligned_cols=22 Identities=18% Similarity=0.194 Sum_probs=16.1
Q ss_pred HHHHHhhc-CCCCccHHHHHHHH
Q 019357 193 DLSSQTIA-SSESYDLVRTLRMG 214 (342)
Q Consensus 193 DviAQ~I~-~~~~~D~~Rt~rfa 214 (342)
.++||.|. .++.+||...+.-+
T Consensus 5 kilaqiiqehregldwqeaatra 27 (61)
T d2v9va1 5 KILAQIIQEHREGLDWQEAATRA 27 (61)
T ss_dssp HHHHHHHHHCSSCEEHHHHHHHH
T ss_pred HHHHHHHHHHHccCcHHHHHHHh
Confidence 47899987 67889998655433
No 7
>d2cvza1 a.100.1.1 (A:158-289) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}
Probab=4.73 E-value=5.6e+02 Score=18.13 Aligned_cols=59 Identities=10% Similarity=0.098 Sum_probs=39.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHhhhhhhhhhhHhHHHH-HHhhhCCC
Q 019357 178 VLTKSATCSLIYIAADLSSQTIASSESYDLVRTLRMGGYGMLILGPTLHFWFN-FVSKLFPK 238 (342)
Q Consensus 178 LlTKsvTsgvL~~lGDviAQ~I~~~~~~D~~Rt~rfal~G~~~~GPl~H~WY~-~LdrlfP~ 238 (342)
++.|.+.++.+.++++.++-.- ...+|....+....-|..-+.++.+.--. .+++-++.
T Consensus 9 l~nN~l~~~~~~~~aEal~la~--~~Gld~~~~~~vl~~s~~~s~~~~~~~p~~~~~~~~~~ 68 (132)
T d2cvza1 9 AINNALLAVNLWAAGEGLLALV--KQGVSAEKALEVINASSGRSNATENLIPQRVLTRAFPK 68 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH--HTTCCHHHHHHHHTTSTTCBHHHHHTHHHHTTTSCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HcCCCHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhhh
Confidence 4566777777777777665444 46799999999887777666666655433 34555543
No 8
>d1jt6a2 a.121.1.1 (A:73-187) Multidrug binding protein QacR {Staphylococcus aureus [TaxId: 1280]}
Probab=4.19 E-value=3.7e+02 Score=19.41 Aligned_cols=40 Identities=8% Similarity=-0.159 Sum_probs=24.8
Q ss_pred HHHHHHHHHhhc-CCCCccHHHHHHHHhhhhhhhhhhHhHHHHH
Q 019357 189 YIAADLSSQTIA-SSESYDLVRTLRMGGYGMLILGPTLHFWFNF 231 (342)
Q Consensus 189 ~~lGDviAQ~I~-~~~~~D~~Rt~rfal~G~~~~GPl~H~WY~~ 231 (342)
-.+.+++.|.++ +.-..+-.+...++++|++ .|.. .||+-
T Consensus 53 ~~~~~Ii~eGi~~G~f~~~d~~~~~~~il~~l-ng~~--~Wy~~ 93 (115)
T d1jt6a2 53 DAYHVIFKEGNLNGEWSINDVNAVSKIAANAV-NGIV--TFTHE 93 (115)
T ss_dssp HHHHHHHHHHHTTTSCCCSCHHHHHHHHHHHH-HHHH--HSCTT
T ss_pred HHHHHHHHHHHHCCceeccCHHHHHHHHHHHH-HHHH--HHhcc
Confidence 345677888887 3333344577777888886 5443 47744
No 9
>d1vi0a2 a.121.1.1 (A:78-194) Hypothetical transcriptional regulator YsiA {Bacillus subtilis [TaxId: 1423]}
Probab=4.15 E-value=5.3e+02 Score=17.06 Aligned_cols=30 Identities=23% Similarity=0.224 Sum_probs=15.8
Q ss_pred HHHHHHHHHhhcCCCCc--c-HHHHHHHHhhhhh
Q 019357 189 YIAADLSSQTIASSESY--D-LVRTLRMGGYGML 219 (342)
Q Consensus 189 ~~lGDviAQ~I~~~~~~--D-~~Rt~rfal~G~~ 219 (342)
-.+.+++.+..+ .+.+ | -.+.+..+++|.+
T Consensus 51 ~~~~~ii~~g~~-~G~ir~d~d~~~~a~~i~g~i 83 (117)
T d1vi0a2 51 NILDGILTEGIQ-SGEIKEGLDVRLARQMIFGTI 83 (117)
T ss_dssp HHHHHHHHHHHH-TTCBCTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-cCCcccCCCHHHHHHHHHHHH
Confidence 344566666665 2222 3 2356666677763
No 10
>d1h2vc1 a.118.1.14 (C:29-290) CBP80, 80KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.09 E-value=6.7e+02 Score=20.26 Aligned_cols=70 Identities=11% Similarity=0.147 Sum_probs=46.0
Q ss_pred hHHHHHHHHhhhhhhhhHHHHHHHHHHhhhcCCCh---HHHHHHHhhchHHHHhhc-c-----ccchHHHhhhhceecC
Q 019357 241 LVATLKKMAMGQTIYGPIMTVVFLSLNASLQGESG---EEIVARLKRDLLPTMFKG-V-----MYWPVCDFITFRFTPV 310 (342)
Q Consensus 241 l~tvlkKVllDQlVfaPl~~~~Ff~~~~lLeG~S~---~~i~~kLk~dy~~tl~as-w-----~VWPpaq~INF~fVP~ 310 (342)
.+..+.+.+++.....|..+.+|-++.++++-+.. +++.+++...+-..+..+ | .+-=+++++|+..++.
T Consensus 36 ~~~~il~~l~~~~~~~P~k~~~yA~Lv~llN~~~~e~g~~~l~~~~~~f~~~l~~~~~~~~~~llrFla~L~n~~Vv~~ 114 (262)
T d1h2vc1 36 YKSKILRLLCTVARLLPEKLTIYTTLVGLLNARNYNFGGEFVEAMIRQLKESLKANNYNEAVYLVRFLSDLVNCHVIAA 114 (262)
T ss_dssp HHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTSBCH
T ss_pred HHHHHHHHHHHHHHhCcchHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCCCcH
Confidence 35567778888888889988888888888876653 245555555555555432 2 2345667777766654
Done!